HHsearch alignment for GI: 254780132 and conserved domain: cd03224
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=97.03 E-value=0.00098 Score=43.47 Aligned_cols=26 Identities=35% Similarity=0.511 Sum_probs=22.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 71999987999998999999985189
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNSE 27 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~~ 27 (186)
T Consensus 26 Gei~~liG~nGaGKSTLl~~i~Gl~~ 51 (222)
T cd03224 26 GEIVALLGRNGAGKTTLLKTIMGLLP 51 (222)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 98999999999859999999977988