HHsearch alignment for GI: 254780132 and conserved domain: cd03237
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.24 E-value=0.00025 Score=47.07 Aligned_cols=25 Identities=28% Similarity=0.478 Sum_probs=21.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 7199998799999899999998518
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNS 26 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~ 26 (186)
T Consensus 25 GEiv~liGpNGaGKSTLlk~l~Gll 49 (246)
T cd03237 25 SEVIGILGPNGIGKTTFIKMLAGVL 49 (246)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 9899999799976999999997787