HHsearch alignment for GI: 254780132 and conserved domain: cd03249
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=97.68 E-value=6.9e-05 Score=50.44 Aligned_cols=69 Identities=16% Similarity=0.177 Sum_probs=41.2
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCC-CEEEEEEECCCCCCCCCCCCCCHHHCCHHHHHHHH---CCCEEEEEEEECCCE
Q ss_conf 71999987999998999999985189-81799860278889883346420100145542210---278187666612870
Q gi|254780132|r 2 AHIFVLIGASGVGKTTIAKQVVLNSE-YLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGWK---HTGLFIETTKVRDEY 77 (186)
Q Consensus 2 ~kiivi~GpsGsGK~tl~~~L~~~~~-~~~~~v~~TTR~~R~~E~~g~dY~Fvs~~~F~~~i---~~~~FiE~~~~~g~~ 77 (186)
T Consensus 29 G~~iaIvG~sGsGKSTLl~ll~gl~~p~~G~-I~----------idg~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi 97 (238)
T cd03249 29 GKTVALVGSSGCGKSTVVSLLERFYDPTSGE-IL----------LDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIAENI 97 (238)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHCCCCCCCE-EE----------ECCEECCCCCHHHHHHCEEEECCCCEECCCCHHHHH
T ss_conf 9999999999998999999982386188518-99----------999992318999997406999158967275299996
Q ss_pred -EEEE
Q ss_conf -4544
Q gi|254780132|r 78 -YGYL 81 (186)
Q Consensus 78 -YGts 81 (186)
T Consensus 98 ~~g~~ 102 (238)
T cd03249 98 RYGKP 102 (238)
T ss_pred HCCCC
T ss_conf 33687