BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780132|ref|YP_003064545.1| guanylate kinase [Candidatus
Liberibacter asiaticus str. psy62]
(186 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780132|ref|YP_003064545.1| guanylate kinase [Candidatus Liberibacter asiaticus str. psy62]
Length = 186
Score = 387 bits (995), Expect = e-110, Method: Compositional matrix adjust.
Identities = 186/186 (100%), Positives = 186/186 (100%)
Query: 1 MAHIFVLIGASGVGKTTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKG 60
MAHIFVLIGASGVGKTTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKG
Sbjct: 1 MAHIFVLIGASGVGKTTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKG 60
Query: 61 WKHTGLFIETTKVRDEYYGYLKEDINNPMEHGYDILLILTHQGLAPLKKLYEDQVTSIFI 120
WKHTGLFIETTKVRDEYYGYLKEDINNPMEHGYDILLILTHQGLAPLKKLYEDQVTSIFI
Sbjct: 61 WKHTGLFIETTKVRDEYYGYLKEDINNPMEHGYDILLILTHQGLAPLKKLYEDQVTSIFI 120
Query: 121 APPSEAELIQRRIKRREDIPFNLDPDLFGKNHSYSFTIVNNHLPTACRQVGLIREFVKRG 180
APPSEAELIQRRIKRREDIPFNLDPDLFGKNHSYSFTIVNNHLPTACRQVGLIREFVKRG
Sbjct: 121 APPSEAELIQRRIKRREDIPFNLDPDLFGKNHSYSFTIVNNHLPTACRQVGLIREFVKRG 180
Query: 181 KKANYD 186
KKANYD
Sbjct: 181 KKANYD 186
>gi|254781197|ref|YP_003065610.1| guanylate kinase [Candidatus Liberibacter asiaticus str. psy62]
Length = 185
Score = 366 bits (939), Expect = e-103, Method: Compositional matrix adjust.
Identities = 175/181 (96%), Positives = 178/181 (98%)
Query: 1 MAHIFVLIGASGVGKTTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKG 60
MAHIFVLIGASGVG+TTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKG
Sbjct: 1 MAHIFVLIGASGVGETTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKG 60
Query: 61 WKHTGLFIETTKVRDEYYGYLKEDINNPMEHGYDILLILTHQGLAPLKKLYEDQVTSIFI 120
WKHTGLFIETTKVRDEYYGYLKEDINNPMEHGYDILLILTHQGLAPLKKLYEDQVTSIFI
Sbjct: 61 WKHTGLFIETTKVRDEYYGYLKEDINNPMEHGYDILLILTHQGLAPLKKLYEDQVTSIFI 120
Query: 121 APPSEAELIQRRIKRREDIPFNLDPDLFGKNHSYSFTIVNNHLPTACRQVGLIREFVKRG 180
APPSEAELIQRRIKRRED PFNLDPDLFGKNHSYSFTIVNNHLPTACRQVG IREFVK+
Sbjct: 121 APPSEAELIQRRIKRREDTPFNLDPDLFGKNHSYSFTIVNNHLPTACRQVGFIREFVKQH 180
Query: 181 K 181
+
Sbjct: 181 R 181
>gi|255764507|ref|YP_003065323.2| guanylate kinase [Candidatus Liberibacter asiaticus str. psy62]
Length = 222
Score = 82.0 bits (201), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 46/128 (35%), Positives = 66/128 (51%)
Query: 4 IFVLIGASGVGKTTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGWKH 63
+ ++ SGVGK+TIA+ ++ + M + VTTR R +E DY F+S S+F K
Sbjct: 17 MLIISSPSGVGKSTIARHLLKCDQNFEMSISVTTRVRRPNEVDGKDYYFLSLSRFNELKK 76
Query: 64 TGLFIETTKVRDEYYGYLKEDINNPMEHGYDILLILTHQGLAPLKKLYEDQVTSIFIAPP 123
FIE +V +YG L++ I + G D+L + QG L K V S FI PP
Sbjct: 77 ANAFIEKAEVHGNFYGTLRDPIEETISKGKDMLFDIDWQGAQNLHKQMGSNVLSFFILPP 136
Query: 124 SEAELIQR 131
+ EL R
Sbjct: 137 TMQELCSR 144
>gi|254780790|ref|YP_003065203.1| hypothetical protein CLIBASIA_03405 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 129
Score = 26.9 bits (58), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 6/67 (8%)
Query: 67 FIETTKVRDEYYGYLKEDINNPMEHGYDILLILTHQGLAPLKKLYEDQVTSIFIAPPSEA 126
F+ET + Y+ + + + + + + L+LT QGL PL V+S+
Sbjct: 64 FLETVRYGVMYF------MLSILNYAFYVKLLLTFQGLQPLLATVLSAVSSMLFVFLLYI 117
Query: 127 ELIQRRI 133
+ RR+
Sbjct: 118 RFMTRRV 124
>gi|254780709|ref|YP_003065122.1| cell division protein [Candidatus Liberibacter asiaticus str.
psy62]
Length = 321
Score = 26.9 bits (58), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 27/46 (58%), Gaps = 4/46 (8%)
Query: 3 HIFVLIGASGVGKTTI----AKQVVLNSEYLVMPVGVTTRRPRVDE 44
H+ +++G +GVGKTT+ +K++ +++ G T R +D+
Sbjct: 112 HVILVVGVNGVGKTTVIGKLSKKMSDAGLKVMLAAGDTFRSAAIDQ 157
>gi|254780576|ref|YP_003064989.1| ABC transporter related protein [Candidatus Liberibacter asiaticus
str. psy62]
Length = 597
Score = 26.6 bits (57), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 11/14 (78%), Positives = 13/14 (92%)
Query: 7 LIGASGVGKTTIAK 20
LIG SGVGK+T+AK
Sbjct: 388 LIGESGVGKSTVAK 401
>gi|254780163|ref|YP_003064576.1| ATP-dependent Clp protease ATP-binding subunit [Candidatus
Liberibacter asiaticus str. psy62]
Length = 798
Score = 26.2 bits (56), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 48/105 (45%), Gaps = 15/105 (14%)
Query: 5 FVLIGASGVGKTTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRFISQ-----SQFK 59
+V G +GVGKT I+KQ L +GV + R D +Y++ +S+ +
Sbjct: 510 YVFSGPTGVGKTEISKQ-------LAFALGV--QLLRFDMSEYMERHAVSRLIGAPPGYV 560
Query: 60 GWKHTGLFIETTKVRDEYYGYLKEDINNPMEHGYDILLILTHQGL 104
G+ G+ ++ ++ Y L ++I +ILL + G+
Sbjct: 561 GFGQGGILADSVD-QNPYSVVLLDEIEKSHPDVLNILLQIMDYGI 604
>gi|254780877|ref|YP_003065290.1| ATP-dependent Clp protease, ATP-binding subunit protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 853
Score = 25.8 bits (55), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 24/107 (22%), Positives = 49/107 (45%), Gaps = 18/107 (16%)
Query: 5 FVLIGASGVGKTTIAK---QVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRFISQ-----S 56
F+ +G +GVGKT + K +++ + E ++ R+D +Y++ +S+
Sbjct: 601 FMFLGPTGVGKTELVKSLARLLFDDENSMI---------RIDMSEYMEKHSVSRLIGSPP 651
Query: 57 QFKGWKHTGLFIETTKVRDEYYGYLKEDINNPMEHGYDILLILTHQG 103
+ G++ G E + R Y L ++I ++ILL + G
Sbjct: 652 GYVGYEEGGALTEAVR-RHPYQVVLFDEIEKAHSDVHNILLQVLDDG 697
Score = 22.3 bits (46), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 10/13 (76%), Positives = 10/13 (76%)
Query: 6 VLIGASGVGKTTI 18
VLIG GVGKT I
Sbjct: 203 VLIGDPGVGKTAI 215
>gi|254780718|ref|YP_003065131.1| putative high-affinity zinc uptake system ATP-binding component
of ABC transporter protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 240
Score = 25.4 bits (54), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 5/40 (12%)
Query: 4 IFVLIGASGVGKTTIAKQVVLNSEYLVMP-VGVTTRRPRV 42
I LIG +G GK+TIAK + ++ P +G R P++
Sbjct: 38 IVTLIGPNGSGKSTIAKLIT----GIIKPTIGSVKRHPQL 73
>gi|254780340|ref|YP_003064753.1| proline/glycine betaine ABC transporter, ATP-binding protein
[Candidatus Liberibacter asiaticus str. psy62]
Length = 348
Score = 25.0 bits (53), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 5/34 (14%)
Query: 2 AHIFVLIGASGVGKTTIAKQV-----VLNSEYLV 30
I VL+G SG GK+T+ + + V+ E LV
Sbjct: 55 GEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLV 88
>gi|254780545|ref|YP_003064958.1| metalloprotease [Candidatus Liberibacter asiaticus str. psy62]
Length = 647
Score = 25.0 bits (53), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 10/49 (20%)
Query: 3 HIFVLIGASGVGKTTIAKQV----------VLNSEYLVMPVGVTTRRPR 41
H +L+G G GKT +A+ V + S+++ + VGV R R
Sbjct: 182 HGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVELFVGVGASRVR 230
>537021.9.peg.472_1
Length = 369
Score = 24.6 bits (52), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 1 MAHIFVLIGASGVGKTTIAKQVVLNSEYLVMPVGVTT 37
+A ++L G G+GKTT A+ + + Y + V T
Sbjct: 20 IAQSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPT 56
>gi|254780270|ref|YP_003064683.1| ATP-dependent protease La [Candidatus Liberibacter asiaticus str.
psy62]
Length = 820
Score = 24.3 bits (51), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 4 IFVLIGASGVGKTTIAKQVVLNS--EYLVMPVG 34
I +G GVGKT++A+ + + +Y+ M +G
Sbjct: 368 ILCFVGPPGVGKTSLAQSIAKATGRQYVRMSLG 400
>gi|255764511|ref|YP_003065518.2| S-adenosyl-methyltransferase MraW [Candidatus Liberibacter
asiaticus str. psy62]
Length = 341
Score = 24.3 bits (51), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 19/45 (42%)
Query: 133 IKRREDIPFNLDPDLFGKNHSYSFTIVNNHLPTACRQVGLIREFV 177
+KRR+ PF DL + NN + A R +R FV
Sbjct: 177 VKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFV 221
>gi|254780627|ref|YP_003065040.1| chromosomal replication initiation protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 502
Score = 24.3 bits (51), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 47/116 (40%), Gaps = 27/116 (23%)
Query: 70 TTKVRDEYYGYLKEDINNPMEHGYDILLI----------LTHQGLAPLKKLYED--QVTS 117
+ +RD LK+ + N D+LLI + H+ L L + QV +
Sbjct: 242 ASAIRDNCALNLKDSLRN-----IDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVA 296
Query: 118 IFIAPPSEAELIQRRIKRR----EDIPFNLDPDLFGKNHSYSFTIVNNHLPTACRQ 169
PPSE E + RI+ R +P L ++ F+I+ N L + ++
Sbjct: 297 AADRPPSELESLDPRIRSRLQGGVSVPLGL------HDYEMRFSILKNRLAISQKE 346
>gi|254780829|ref|YP_003065242.1| ATP-dependent protease ATP-binding subunit [Candidatus
Liberibacter asiaticus str. psy62]
Length = 437
Score = 23.9 bits (50), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 9/22 (40%), Positives = 16/22 (72%)
Query: 1 MAHIFVLIGASGVGKTTIAKQV 22
M +L+G +GVGKT I++++
Sbjct: 52 MPKNILLVGPTGVGKTAISRRL 73
>gi|254780482|ref|YP_003064895.1| ribonuclease P [Candidatus Liberibacter asiaticus str. psy62]
Length = 123
Score = 23.5 bits (49), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Query: 62 KHTGLFIETTKVRDEYYGYLKEDINNPMEHGYDILLILTHQGL-APLKKLYEDQVTSI 118
K G +E ++R ++ ++HG+D +LI L P K+L V +
Sbjct: 49 KKQGCAVERNRMRRRLKEAVRLCAEGVLKHGHDYVLIAKRDALFIPFKELCNHFVERV 106
>gi|254780933|ref|YP_003065346.1| valyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 947
Score = 23.5 bits (49), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 34 GVTTRRPRVDEKQYIDYRFISQSQFKGWKHTGLFIETTKVRDEYYGYLK 82
GVT P + E+ Y+D + +++S + K+ L YY +L+
Sbjct: 389 GVTIE-PCITEQWYLDAKVLAESAIRSAKNGCLSFIPQSWDKSYYEWLE 436
>gi|255764471|ref|YP_003064835.2| GTP-binding protein EngA [Candidatus Liberibacter asiaticus str.
psy62]
Length = 470
Score = 22.3 bits (46), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 1 MAHIFVLIGASGVGKTTIAKQVV 23
M + ++GA VGK+T+ ++V
Sbjct: 1 MIYTIAIVGAPNVGKSTLFNRLV 23
>gi|254780332|ref|YP_003064745.1| replicative DNA helicase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 504
Score = 21.9 bits (45), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 7/24 (29%), Positives = 15/24 (62%)
Query: 2 AHIFVLIGASGVGKTTIAKQVVLN 25
+ + ++ G G+GKT++A + N
Sbjct: 219 SDLIIIAGRPGMGKTSLATNIAYN 242
>gi|254780826|ref|YP_003065239.1| phosphoenolpyruvate carboxykinase [Candidatus Liberibacter
asiaticus str. psy62]
Length = 509
Score = 21.9 bits (45), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 4 IFVLIGASGVGKTTIAKQV 22
+ + G SG GKTT++ V
Sbjct: 220 VALFFGLSGTGKTTLSASV 238
>gi|254780200|ref|YP_003064613.1| ferrochelatase [Candidatus Liberibacter asiaticus str. psy62]
Length = 343
Score = 21.6 bits (44), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 12/19 (63%)
Query: 81 LKEDINNPMEHGYDILLIL 99
+KE INN E G D LLI
Sbjct: 125 VKEIINNLREEGCDRLLIF 143
>gi|255764477|ref|YP_003065232.2| dephospho-CoA kinase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 199
Score = 21.6 bits (44), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 9/17 (52%), Positives = 12/17 (70%)
Query: 4 IFVLIGASGVGKTTIAK 20
I L G+ G GKTT+A+
Sbjct: 3 IIGLTGSIGTGKTTVAE 19
>gi|254780552|ref|YP_003064965.1| Holliday junction DNA helicase RuvB [Candidatus Liberibacter
asiaticus str. psy62]
Length = 334
Score = 21.6 bits (44), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 8/18 (44%), Positives = 13/18 (72%)
Query: 6 VLIGASGVGKTTIAKQVV 23
+ +G G+GKTT+A+ V
Sbjct: 58 LFVGPPGLGKTTLAQVVA 75
>gi|254781219|ref|YP_003065632.1| hypothetical protein CLIBASIA_05630 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 200
Score = 21.6 bits (44), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 7/13 (53%), Positives = 11/13 (84%)
Query: 119 FIAPPSEAELIQR 131
F+ PSEAEL+++
Sbjct: 186 FVVNPSEAELLEK 198
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.322 0.140 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 122,012
Number of Sequences: 1233
Number of extensions: 5074
Number of successful extensions: 43
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 16
Number of HSP's gapped (non-prelim): 31
length of query: 186
length of database: 328,796
effective HSP length: 69
effective length of query: 117
effective length of database: 243,719
effective search space: 28515123
effective search space used: 28515123
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 36 (18.5 bits)