Query gi|254780133|ref|YP_003064546.1| hypothetical protein CLIBASIA_00060 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 63
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 39220
Date Sun May 22 13:01:32 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780133.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 pfam11741 AMIN Localisation of 45.9 30 0.00076 17.3 4.8 45 14-59 9-53 (115)
2 PTZ00270 variable surface prot 33.3 8.3 0.00021 20.3 -0.8 12 36-47 285-299 (333)
3 KOG1228 consensus 25.2 25 0.00064 17.7 0.5 10 38-47 112-121 (256)
4 TIGR03357 VI_zyme type VI secr 23.7 1.6 4.1E-05 24.2 -5.9 35 28-62 67-101 (133)
5 TIGR01329 cysta_beta_ly_E cyst 23.0 14 0.00035 19.1 -1.2 18 11-28 157-174 (415)
6 PRK04019 rplP0 acidic ribosoma 21.9 1.8 4.5E-05 23.9 -6.0 47 16-63 44-94 (328)
7 pfam11631 DUF3255 Protein of u 21.4 67 0.0017 15.4 2.1 38 20-57 64-102 (124)
8 pfam11050 Viral_env_E26 Virus 18.0 67 0.0017 15.4 1.4 16 21-36 32-47 (72)
9 COG3393 Predicted acetyltransf 17.7 71 0.0018 15.3 1.5 16 46-61 232-247 (268)
10 COG5581 c-di-GMP-binding prote 17.4 1E+02 0.0026 14.5 2.7 24 26-49 64-87 (233)
No 1
>pfam11741 AMIN Localisation of periplasmic protein complexes. This N-terminal domain of various bacterial protein families is crucial for the targetting of periplasmic or extracellular proteins to specific regions of the bacterial envelope. AMIN is derived from the N-terminal domain of AmiC, an N-acetylmuramoyl-l-alanine amidase of Escherichia coli which localizes to the septal ring during division and plays a key role in the separation of daughter cells. The AMIN domain is present in several protein families besides amidases suggesting that AMIN may represent a general targetting determinant involved in the localisation of periplasmic protein complexes.
Probab=45.91 E-value=30 Score=17.31 Aligned_cols=45 Identities=24% Similarity=0.371 Sum_probs=32.9
Q ss_pred EEECEEEEEEEECCCCEEEEEECCEEEEEECCCCCCCEEEEEECCC
Q ss_conf 6511146888606774799997430687501103797259972788
Q gi|254780133|r 14 RVDIRDIAVIASETNTRIEIELEGAIYRFEPMIRGDNPCLIVDNDN 59 (63)
Q Consensus 14 rvdirdiaviasetntrieielegaiyrfepmirgdnpclivdndn 59 (63)
-+.|.++.+-.++..+|+.+|..|.. +++.....+..-|++|=.|
T Consensus 9 ~~~It~vrv~~~~~~~~v~let~~~~-~~~~~~l~~p~rlViDi~n 53 (115)
T pfam11741 9 AVQITGVRVWPTDDGTRLILETSGGV-QPQVFTLSNPNRLVVDIPN 53 (115)
T ss_pred CCEEEEEEEEECCCCEEEEEECCCCC-CCEEEECCCCCEEEEECCC
T ss_conf 11899999876799679999838986-3006980589889999779
No 2
>PTZ00270 variable surface protein Vir32; Provisional
Probab=33.30 E-value=8.3 Score=20.31 Aligned_cols=12 Identities=58% Similarity=1.353 Sum_probs=10.0
Q ss_pred CCEEEEEEC---CCC
Q ss_conf 430687501---103
Q gi|254780133|r 36 EGAIYRFEP---MIR 47 (63)
Q Consensus 36 egaiyrfep---mir 47 (63)
-||+|||.| |||
T Consensus 285 SGALYrfTPlG~~ir 299 (333)
T PTZ00270 285 SGALYKFTPLGRMLR 299 (333)
T ss_pred CHHHHHCCCHHHHHH
T ss_conf 003653275189988
No 3
>KOG1228 consensus
Probab=25.21 E-value=25 Score=17.72 Aligned_cols=10 Identities=50% Similarity=1.022 Sum_probs=7.6
Q ss_pred EEEEEECCCC
Q ss_conf 0687501103
Q gi|254780133|r 38 AIYRFEPMIR 47 (63)
Q Consensus 38 aiyrfepmir 47 (63)
..|+|||||-
T Consensus 112 i~ykfEP~Il 121 (256)
T KOG1228 112 ITYKFEPFIL 121 (256)
T ss_pred HEEECCCEEE
T ss_conf 1232265389
No 4
>TIGR03357 VI_zyme type VI secretion system lysozyme-related protein. The description for pfam04965 cites acidic lysozyme activity for some phage-encoded members. This family represents a different subgroup of the proteins from pfam04965, where all members are associated with bacterial type VI secretion system genomic contexts.
Probab=23.70 E-value=1.6 Score=24.16 Aligned_cols=35 Identities=31% Similarity=0.523 Sum_probs=22.6
Q ss_pred CCEEEEEECCEEEEEECCCCCCCEEEEEECCCCCC
Q ss_conf 74799997430687501103797259972788657
Q gi|254780133|r 28 NTRIEIELEGAIYRFEPMIRGDNPCLIVDNDNPLD 62 (63)
Q Consensus 28 ntrieielegaiyrfepmirgdnpclivdndnpld 62 (63)
-.+|+-+++.+|-+|||-++.-.--++.++++|+.
T Consensus 67 ~~~i~~~I~~~I~~fEPRL~~v~V~~~~~~~~~~~ 101 (133)
T TIGR03357 67 RRRIRRAIEQAIERYEPRLSSVRVTALEDEEDPLA 101 (133)
T ss_pred HHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCE
T ss_conf 99999999999996597644279998248999728
No 5
>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase; InterPro: IPR006238 This group of sequences represent cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys..
Probab=22.96 E-value=14 Score=19.11 Aligned_cols=18 Identities=56% Similarity=0.630 Sum_probs=9.7
Q ss_pred EEEEEECEEEEEEEECCC
Q ss_conf 577651114688860677
Q gi|254780133|r 11 LIRRVDIRDIAVIASETN 28 (63)
Q Consensus 11 lirrvdirdiaviasetn 28 (63)
|+|-||||.|+-.|.+.|
T Consensus 157 l~~ivDI~~i~~~ah~~~ 174 (415)
T TIGR01329 157 LIKIVDIRKIAEAAHALN 174 (415)
T ss_pred CCEEECHHHHHHHHHHCC
T ss_conf 624633789999998508
No 6
>PRK04019 rplP0 acidic ribosomal protein P0; Validated
Probab=21.86 E-value=1.8 Score=23.95 Aligned_cols=47 Identities=36% Similarity=0.500 Sum_probs=32.9
Q ss_pred ECEEEEEEEECCCCEEEEEECCE----EEEEECCCCCCCEEEEEECCCCCCC
Q ss_conf 11146888606774799997430----6875011037972599727886579
Q gi|254780133|r 16 DIRDIAVIASETNTRIEIELEGA----IYRFEPMIRGDNPCLIVDNDNPLDL 63 (63)
Q Consensus 16 dirdiaviasetntrieielega----iyrfepmirgdnpclivdndnpldl 63 (63)
.+|+-+.|----||-+..-|+.+ +-.+++.++| |++++..|+||..+
T Consensus 44 ~LRg~a~i~m~KntLi~~Al~~~~~~~~~~L~~~l~g-~v~lifTn~npfel 94 (328)
T PRK04019 44 KLRGKAELKVSKNTLIERALEEAGGEELEKLEEYLEG-QVALIFTNMNPFKL 94 (328)
T ss_pred HHHCCCEEEEEHHHHHHHHHHHCCCCHHHHHHHHCCC-CEEEEEECCCHHHH
T ss_conf 9558847999657999999997476138999986158-86999948999999
No 7
>pfam11631 DUF3255 Protein of unknown function (DUF3255). Members in this family of proteins are annotated as YxeF however no function is currently known. The family appears to be restricted to Bacillus.
Probab=21.40 E-value=67 Score=15.42 Aligned_cols=38 Identities=34% Similarity=0.445 Sum_probs=30.2
Q ss_pred EEEEEECCCCEEEEEECCEEEEEEC-CCCCCCEEEEEEC
Q ss_conf 6888606774799997430687501-1037972599727
Q gi|254780133|r 20 IAVIASETNTRIEIELEGAIYRFEP-MIRGDNPCLIVDN 57 (63)
Q Consensus 20 iaviasetntrieielegaiyrfep-mirgdnpclivdn 57 (63)
..||...|.-.||||.-|.-|-... +-||.|-.||-.-
T Consensus 64 ykvisq~tdgsieieylg~~~plkstlkrg~n~tliw~~ 102 (124)
T pfam11631 64 YKVISQNTDGSIEIEYLGHPHPLKSTLKRGENDTLIWEI 102 (124)
T ss_pred HHHEECCCCCEEEEEECCCCCCHHHHHHCCCCCCEEEEE
T ss_conf 553102688708888737985335687377888179986
No 8
>pfam11050 Viral_env_E26 Virus envelope protein E26. E26 is a multifunctional protein. One form of E26 associates with viral DNA or DNA binding proteins, while a second form associates with intracellular membranes.
Probab=18.04 E-value=67 Score=15.42 Aligned_cols=16 Identities=50% Similarity=0.488 Sum_probs=13.2
Q ss_pred EEEEECCCCEEEEEEC
Q ss_conf 8886067747999974
Q gi|254780133|r 21 AVIASETNTRIEIELE 36 (63)
Q Consensus 21 aviasetntrieiele 36 (63)
.||+++.|.|.||.-.
T Consensus 32 ~Vi~~~~nkRFei~d~ 47 (72)
T pfam11050 32 GVIASANNKRFEILDA 47 (72)
T ss_pred CEEEECCCCCEEECCH
T ss_conf 8388606652351488
No 9
>COG3393 Predicted acetyltransferase [General function prediction only]
Probab=17.72 E-value=71 Score=15.28 Aligned_cols=16 Identities=50% Similarity=1.090 Sum_probs=13.1
Q ss_pred CCCCCEEEEEECCCCC
Q ss_conf 0379725997278865
Q gi|254780133|r 46 IRGDNPCLIVDNDNPL 61 (63)
Q Consensus 46 irgdnpclivdndnpl 61 (63)
-.|.-|||.++-|||.
T Consensus 232 ~eGk~~~L~~~~~N~~ 247 (268)
T COG3393 232 AEGKIPCLFVNSDNPV 247 (268)
T ss_pred HCCCEEEEEEECCCHH
T ss_conf 5798148998347878
No 10
>COG5581 c-di-GMP-binding protein [Signal transduction mechanisms]
Probab=17.41 E-value=1e+02 Score=14.47 Aligned_cols=24 Identities=33% Similarity=0.433 Sum_probs=18.4
Q ss_pred CCCCEEEEEECCEEEEEECCCCCC
Q ss_conf 677479999743068750110379
Q gi|254780133|r 26 ETNTRIEIELEGAIYRFEPMIRGD 49 (63)
Q Consensus 26 etntrieielegaiyrfepmirgd 49 (63)
.+..+|+.+-+||.|.|+--+-+.
T Consensus 64 g~~~ti~~~~~~a~y~Fts~~l~~ 87 (233)
T COG5581 64 GTQFTIEAEHKGAKYEFTSEVLEQ 87 (233)
T ss_pred CCEEEEEEECCCCEEEEEEEEHCC
T ss_conf 955999995489579999831100
Done!