Query         gi|254780133|ref|YP_003064546.1| hypothetical protein CLIBASIA_00060 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 63
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 23785
Date          Sun May 22 13:37:40 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780133.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 2xvs_A Tetratricopeptide repea  42.4      11 0.00048   18.4   2.2   46   15-61    120-165 (166)
  2 2joz_A Hypothetical protein YX  22.9      41  0.0017   15.4   2.3   39   19-57     63-102 (135)
  3 1knx_A Probable HPR(Ser) kinas   5.3 1.4E+02  0.0059   12.5   0.5   17   42-58     76-92  (312)
  4 1ko7_A HPR kinase/phosphatase;   5.1 1.4E+02   0.006   12.4   0.4   21   40-60     71-91  (314)
  5 1t0h_A Voltage-gated calcium c   4.9 1.2E+02   0.005   12.9  -0.1   16   37-52     52-67  (132)
  6 1co4_A AMT1, protein (activato   4.5   2E+02  0.0085   11.6   1.0   29   33-61      2-30  (42)
  7 1oey_J P40-PHOX, neutrophil cy   4.4 2.1E+02  0.0086   11.6   1.6    9   14-22     17-25  (107)
  8 1b34_B Protein (small nuclear    4.0 2.2E+02  0.0094   11.4   1.2   13   45-57    100-112 (118)
  9 3k2y_A Uncharacterized protein   3.9 1.7E+02   0.007   12.1   0.0   27   36-62     20-46  (109)
 10 2gix_A Inward rectifier potass   3.8 2.3E+02  0.0097   11.3   1.4   20   40-59    161-180 (208)

No 1  
>2xvs_A Tetratricopeptide repeat protein 5; antitumor protein, P53 cofactor, stress-response; 1.80A {Homo sapiens}
Probab=42.39  E-value=11  Score=18.41  Aligned_cols=46  Identities=30%  Similarity=0.403  Sum_probs=38.9

Q ss_pred             EECEEEEEEEECCCCEEEEEECCEEEEEECCCCCCCEEEEEECCCCC
Q ss_conf             51114688860677479999743068750110379725997278865
Q gi|254780133|r   15 VDIRDIAVIASETNTRIEIELEGAIYRFEPMIRGDNPCLIVDNDNPL   61 (63)
Q Consensus        15 vdirdiaviasetntrieielegaiyrfepmirgdnpclivdndnpl   61 (63)
                      +-|-|--.|..-.-+++.|+.++-.|.|. -||-|+|-.++-|..||
T Consensus       120 v~iGDsVaIpEP~~~~~~~~~~~k~~~f~-~IRVd~P~~l~VNGkkl  165 (166)
T 2xvs_A          120 VLIGDSVAIPEPNLRLHRIQHKGKDYSFS-SVRVETPLLLVVNGKPQ  165 (166)
T ss_dssp             CCTTCEEEEESCEEEEEEEEETTEEEEEE-EEEESCGGGCEETTEEC
T ss_pred             EEECCEEEECCCCEEEEEEEECCCEEEEE-EEEECCCEEEEECCEEC
T ss_conf             37556787168868998610358515788-99977850899978978


No 2  
>2joz_A Hypothetical protein YXEF; structure, GFT, NESG, lipoprotein, structural genomics, PSI-2, protein structure initiative; NMR {Bacillus subtilis} SCOP: b.60.1.1
Probab=22.87  E-value=41  Score=15.40  Aligned_cols=39  Identities=33%  Similarity=0.542  Sum_probs=30.9

Q ss_pred             EEEEEEECCCCEEEEEECCEEEEEEC-CCCCCCEEEEEEC
Q ss_conf             46888606774799997430687501-1037972599727
Q gi|254780133|r   19 DIAVIASETNTRIEIELEGAIYRFEP-MIRGDNPCLIVDN   57 (63)
Q Consensus        19 diaviasetntrieielegaiyrfep-mirgdnpclivdn   57 (63)
                      ...||...|.-.|||+.-|.-|-... .-||.|-.||-..
T Consensus        63 aykvisq~tdgsiei~ylg~~~p~kstlkrg~n~tliw~~  102 (135)
T 2joz_A           63 AYKVISQSTDGSIEIQYLGPYYPLKSTLKRGENGTLIWEQ  102 (135)
T ss_dssp             EEEEEECCSSSEEEEEEESTTCSCEEEEEECSTTCEEEEE
T ss_pred             HHHHEECCCCCEEEEEECCCCCCHHHHHHCCCCCCEEEEE
T ss_conf             4553302688718989737985325687277888189986


No 3  
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=5.33  E-value=1.4e+02  Score=12.50  Aligned_cols=17  Identities=12%  Similarity=0.485  Sum_probs=6.6

Q ss_pred             EECCCCCCCEEEEEECC
Q ss_conf             50110379725997278
Q gi|254780133|r   42 FEPMIRGDNPCLIVDND   58 (63)
Q Consensus        42 fepmirgdnpclivdnd   58 (63)
                      |+-+...+-||+|+..+
T Consensus        76 ~~~l~~~~~P~iI~t~~   92 (312)
T 1knx_A           76 LHNLLKLNPPAIILTKS   92 (312)
T ss_dssp             HHHHHTTCCSCEEEETT
T ss_pred             HHHHHCCCCCEEEEECC
T ss_conf             99983889888999894


No 4  
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=5.08  E-value=1.4e+02  Score=12.45  Aligned_cols=21  Identities=29%  Similarity=0.476  Sum_probs=10.8

Q ss_pred             EEEECCCCCCCEEEEEECCCC
Q ss_conf             875011037972599727886
Q gi|254780133|r   40 YRFEPMIRGDNPCLIVDNDNP   60 (63)
Q Consensus        40 yrfepmirgdnpclivdndnp   60 (63)
                      .+|+-+..-+-||+|+.++.+
T Consensus        71 ~~~~~~~~~~~p~iIvt~~~~   91 (314)
T 1ko7_A           71 GRMRKLCRPETPAIIVTRDLE   91 (314)
T ss_dssp             THHHHHCCTTCCCEEECTTCC
T ss_pred             HHHHHHHCCCCCEEEEECCCC
T ss_conf             999998366987899989999


No 5  
>1t0h_A Voltage-gated calcium channel subunit BETA2A; SH3 domain, nucleotide kinase like domain, signaling protein; 1.97A {Rattus norvegicus} SCOP: b.34.2.1 PDB: 1t0j_A
Probab=4.87  E-value=1.2e+02  Score=12.87  Aligned_cols=16  Identities=19%  Similarity=0.293  Sum_probs=12.1

Q ss_pred             CEEEEEECCCCCCCEE
Q ss_conf             3068750110379725
Q gi|254780133|r   37 GAIYRFEPMIRGDNPC   52 (63)
Q Consensus        37 gaiyrfepmirgdnpc   52 (63)
                      -|+|-|+|..-++.||
T Consensus        52 rA~~~Y~~~~d~~~P~   67 (132)
T 1t0h_A           52 RTNVRYSAAQEDDVPV   67 (132)
T ss_dssp             EESSCBCCCGGGCCSS
T ss_pred             EEEEECCCCCCCCCCC
T ss_conf             8944017877888755


No 6  
>1co4_A AMT1, protein (activator of metallothionein 1); metal regulation, translation/regulation protein complex; NMR {Synthetic} SCOP: g.47.1.1
Probab=4.48  E-value=2e+02  Score=11.65  Aligned_cols=29  Identities=24%  Similarity=0.500  Sum_probs=17.4

Q ss_pred             EEECCEEEEEECCCCCCCEEEEEECCCCC
Q ss_conf             99743068750110379725997278865
Q gi|254780133|r   33 IELEGAIYRFEPMIRGDNPCLIVDNDNPL   61 (63)
Q Consensus        33 ielegaiyrfepmirgdnpclivdndnpl   61 (63)
                      +-..|.-|--|+-|||...----.+|.||
T Consensus         2 vli~g~KyAC~~CIrGHR~S~C~H~dRpL   30 (42)
T 1co4_A            2 VVINGVKYACDSCIKSHKAAQCEHNDRPL   30 (42)
T ss_dssp             EEETTEEEEETTTTTTSGGGGCCCCSSCE
T ss_pred             EEECCCEEEHHHHHCCCCCCCCCCCCCCC
T ss_conf             67878066387774515225453588634


No 7  
>1oey_J P40-PHOX, neutrophil cytosol factor 4; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 domain, heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=4.39  E-value=2.1e+02  Score=11.61  Aligned_cols=9  Identities=56%  Similarity=0.660  Sum_probs=0.0

Q ss_pred             EEECEEEEE
Q ss_conf             651114688
Q gi|254780133|r   14 RVDIRDIAV   22 (63)
Q Consensus        14 rvdirdiav   22 (63)
                      .+++|||+|
T Consensus        17 ~~~~rDI~V   25 (107)
T 1oey_J           17 ISTIKDIAV   25 (107)
T ss_dssp             EEEEEEEEE
T ss_pred             CCEEEEEEE
T ss_conf             740312787


No 8  
>1b34_B Protein (small nuclear ribonucleoprotein SM D2); snRNP, splicing, spliceosome, core snRNP domain, systemic lupus erythematosus, SLE; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 3cw1_C
Probab=3.98  E-value=2.2e+02  Score=11.42  Aligned_cols=13  Identities=31%  Similarity=0.733  Sum_probs=0.0

Q ss_pred             CCCCCCEEEEEEC
Q ss_conf             1037972599727
Q gi|254780133|r   45 MIRGDNPCLIVDN   57 (63)
Q Consensus        45 mirgdnpclivdn   57 (63)
                      +|||||--+|+-+
T Consensus       100 ~iRGd~VvlI~~~  112 (118)
T 1b34_B          100 FLRGDSVIVVLRN  112 (118)
T ss_dssp             EECGGGEEEEEEC
T ss_pred             EEECCEEEEEECC
T ss_conf             9929989999668


No 9  
>3k2y_A Uncharacterized protein LP_0118; nucleic acid binding,zinc ION binding, structural genomics, PSI-2, protein structure initiative; 2.40A {Lactobacillus plantarum}
Probab=3.92  E-value=1.7e+02  Score=12.09  Aligned_cols=27  Identities=15%  Similarity=0.190  Sum_probs=0.0

Q ss_pred             CCEEEEEECCCCCCCEEEEEECCCCCC
Q ss_conf             430687501103797259972788657
Q gi|254780133|r   36 EGAIYRFEPMIRGDNPCLIVDNDNPLD   62 (63)
Q Consensus        36 egaiyrfepmirgdnpclivdndnpld   62 (63)
                      +++..++..+-.|+--.|+-+-+||.|
T Consensus        20 ~~~~~~~~~L~~G~~l~L~rEp~N~~D   46 (109)
T 3k2y_A           20 DDIVATLTTLRVGMAVLLQRESGNQYD   46 (109)
T ss_dssp             TTHHHHTTSCCTTCEEEEEECTTCSSC
T ss_pred             CCHHHHHHCCCCCCEEEEEECCCCCCC
T ss_conf             686678731899999999989999889


No 10 
>2gix_A Inward rectifier potassium channel 2; cytoplasmic domains of KIR2.1, andersen'S mutation, metal transport; 2.02A {Mus musculus}
Probab=3.83  E-value=2.3e+02  Score=11.35  Aligned_cols=20  Identities=25%  Similarity=0.443  Sum_probs=0.0

Q ss_pred             EEEECCCCCCCEEEEEECCC
Q ss_conf             87501103797259972788
Q gi|254780133|r   40 YRFEPMIRGDNPCLIVDNDN   59 (63)
Q Consensus        40 yrfepmirgdnpclivdndn   59 (63)
                      +||+||+..+.-.+.||..+
T Consensus       161 ~rF~div~~~~g~~~VD~s~  180 (208)
T 2gix_A          161 HRYEPVLFEEKHYYKVDYSR  180 (208)
T ss_dssp             EEECCCEEECSSSEEEEGGG
T ss_pred             CEEEEEEEECCCCEEEEHHH
T ss_conf             79968899379928986688


Done!