Query gi|254780133|ref|YP_003064546.1| hypothetical protein CLIBASIA_00060 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 63 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 23785 Date Sun May 22 13:37:40 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780133.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 2xvs_A Tetratricopeptide repea 42.4 11 0.00048 18.4 2.2 46 15-61 120-165 (166) 2 2joz_A Hypothetical protein YX 22.9 41 0.0017 15.4 2.3 39 19-57 63-102 (135) 3 1knx_A Probable HPR(Ser) kinas 5.3 1.4E+02 0.0059 12.5 0.5 17 42-58 76-92 (312) 4 1ko7_A HPR kinase/phosphatase; 5.1 1.4E+02 0.006 12.4 0.4 21 40-60 71-91 (314) 5 1t0h_A Voltage-gated calcium c 4.9 1.2E+02 0.005 12.9 -0.1 16 37-52 52-67 (132) 6 1co4_A AMT1, protein (activato 4.5 2E+02 0.0085 11.6 1.0 29 33-61 2-30 (42) 7 1oey_J P40-PHOX, neutrophil cy 4.4 2.1E+02 0.0086 11.6 1.6 9 14-22 17-25 (107) 8 1b34_B Protein (small nuclear 4.0 2.2E+02 0.0094 11.4 1.2 13 45-57 100-112 (118) 9 3k2y_A Uncharacterized protein 3.9 1.7E+02 0.007 12.1 0.0 27 36-62 20-46 (109) 10 2gix_A Inward rectifier potass 3.8 2.3E+02 0.0097 11.3 1.4 20 40-59 161-180 (208) No 1 >2xvs_A Tetratricopeptide repeat protein 5; antitumor protein, P53 cofactor, stress-response; 1.80A {Homo sapiens} Probab=42.39 E-value=11 Score=18.41 Aligned_cols=46 Identities=30% Similarity=0.403 Sum_probs=38.9 Q ss_pred EECEEEEEEEECCCCEEEEEECCEEEEEECCCCCCCEEEEEECCCCC Q ss_conf 51114688860677479999743068750110379725997278865 Q gi|254780133|r 15 VDIRDIAVIASETNTRIEIELEGAIYRFEPMIRGDNPCLIVDNDNPL 61 (63) Q Consensus 15 vdirdiaviasetntrieielegaiyrfepmirgdnpclivdndnpl 61 (63) +-|-|--.|..-.-+++.|+.++-.|.|. -||-|+|-.++-|..|| T Consensus 120 v~iGDsVaIpEP~~~~~~~~~~~k~~~f~-~IRVd~P~~l~VNGkkl 165 (166) T 2xvs_A 120 VLIGDSVAIPEPNLRLHRIQHKGKDYSFS-SVRVETPLLLVVNGKPQ 165 (166) T ss_dssp CCTTCEEEEESCEEEEEEEEETTEEEEEE-EEEESCGGGCEETTEEC T ss_pred EEECCEEEECCCCEEEEEEEECCCEEEEE-EEEECCCEEEEECCEEC T ss_conf 37556787168868998610358515788-99977850899978978 No 2 >2joz_A Hypothetical protein YXEF; structure, GFT, NESG, lipoprotein, structural genomics, PSI-2, protein structure initiative; NMR {Bacillus subtilis} SCOP: b.60.1.1 Probab=22.87 E-value=41 Score=15.40 Aligned_cols=39 Identities=33% Similarity=0.542 Sum_probs=30.9 Q ss_pred EEEEEEECCCCEEEEEECCEEEEEEC-CCCCCCEEEEEEC Q ss_conf 46888606774799997430687501-1037972599727 Q gi|254780133|r 19 DIAVIASETNTRIEIELEGAIYRFEP-MIRGDNPCLIVDN 57 (63) Q Consensus 19 diaviasetntrieielegaiyrfep-mirgdnpclivdn 57 (63) ...||...|.-.|||+.-|.-|-... .-||.|-.||-.. T Consensus 63 aykvisq~tdgsiei~ylg~~~p~kstlkrg~n~tliw~~ 102 (135) T 2joz_A 63 AYKVISQSTDGSIEIQYLGPYYPLKSTLKRGENGTLIWEQ 102 (135) T ss_dssp EEEEEECCSSSEEEEEEESTTCSCEEEEEECSTTCEEEEE T ss_pred HHHHEECCCCCEEEEEECCCCCCHHHHHHCCCCCCEEEEE T ss_conf 4553302688718989737985325687277888189986 No 3 >1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2 Probab=5.33 E-value=1.4e+02 Score=12.50 Aligned_cols=17 Identities=12% Similarity=0.485 Sum_probs=6.6 Q ss_pred EECCCCCCCEEEEEECC Q ss_conf 50110379725997278 Q gi|254780133|r 42 FEPMIRGDNPCLIVDND 58 (63) Q Consensus 42 fepmirgdnpclivdnd 58 (63) |+-+...+-||+|+..+ T Consensus 76 ~~~l~~~~~P~iI~t~~ 92 (312) T 1knx_A 76 LHNLLKLNPPAIILTKS 92 (312) T ss_dssp HHHHHTTCCSCEEEETT T ss_pred HHHHHCCCCCEEEEECC T ss_conf 99983889888999894 No 4 >1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2 Probab=5.08 E-value=1.4e+02 Score=12.45 Aligned_cols=21 Identities=29% Similarity=0.476 Sum_probs=10.8 Q ss_pred EEEECCCCCCCEEEEEECCCC Q ss_conf 875011037972599727886 Q gi|254780133|r 40 YRFEPMIRGDNPCLIVDNDNP 60 (63) Q Consensus 40 yrfepmirgdnpclivdndnp 60 (63) .+|+-+..-+-||+|+.++.+ T Consensus 71 ~~~~~~~~~~~p~iIvt~~~~ 91 (314) T 1ko7_A 71 GRMRKLCRPETPAIIVTRDLE 91 (314) T ss_dssp THHHHHCCTTCCCEEECTTCC T ss_pred HHHHHHHCCCCCEEEEECCCC T ss_conf 999998366987899989999 No 5 >1t0h_A Voltage-gated calcium channel subunit BETA2A; SH3 domain, nucleotide kinase like domain, signaling protein; 1.97A {Rattus norvegicus} SCOP: b.34.2.1 PDB: 1t0j_A Probab=4.87 E-value=1.2e+02 Score=12.87 Aligned_cols=16 Identities=19% Similarity=0.293 Sum_probs=12.1 Q ss_pred CEEEEEECCCCCCCEE Q ss_conf 3068750110379725 Q gi|254780133|r 37 GAIYRFEPMIRGDNPC 52 (63) Q Consensus 37 gaiyrfepmirgdnpc 52 (63) -|+|-|+|..-++.|| T Consensus 52 rA~~~Y~~~~d~~~P~ 67 (132) T 1t0h_A 52 RTNVRYSAAQEDDVPV 67 (132) T ss_dssp EESSCBCCCGGGCCSS T ss_pred EEEEECCCCCCCCCCC T ss_conf 8944017877888755 No 6 >1co4_A AMT1, protein (activator of metallothionein 1); metal regulation, translation/regulation protein complex; NMR {Synthetic} SCOP: g.47.1.1 Probab=4.48 E-value=2e+02 Score=11.65 Aligned_cols=29 Identities=24% Similarity=0.500 Sum_probs=17.4 Q ss_pred EEECCEEEEEECCCCCCCEEEEEECCCCC Q ss_conf 99743068750110379725997278865 Q gi|254780133|r 33 IELEGAIYRFEPMIRGDNPCLIVDNDNPL 61 (63) Q Consensus 33 ielegaiyrfepmirgdnpclivdndnpl 61 (63) +-..|.-|--|+-|||...----.+|.|| T Consensus 2 vli~g~KyAC~~CIrGHR~S~C~H~dRpL 30 (42) T 1co4_A 2 VVINGVKYACDSCIKSHKAAQCEHNDRPL 30 (42) T ss_dssp EEETTEEEEETTTTTTSGGGGCCCCSSCE T ss_pred EEECCCEEEHHHHHCCCCCCCCCCCCCCC T ss_conf 67878066387774515225453588634 No 7 >1oey_J P40-PHOX, neutrophil cytosol factor 4; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 domain, heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2 Probab=4.39 E-value=2.1e+02 Score=11.61 Aligned_cols=9 Identities=56% Similarity=0.660 Sum_probs=0.0 Q ss_pred EEECEEEEE Q ss_conf 651114688 Q gi|254780133|r 14 RVDIRDIAV 22 (63) Q Consensus 14 rvdirdiav 22 (63) .+++|||+| T Consensus 17 ~~~~rDI~V 25 (107) T 1oey_J 17 ISTIKDIAV 25 (107) T ss_dssp EEEEEEEEE T ss_pred CCEEEEEEE T ss_conf 740312787 No 8 >1b34_B Protein (small nuclear ribonucleoprotein SM D2); snRNP, splicing, spliceosome, core snRNP domain, systemic lupus erythematosus, SLE; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 3cw1_C Probab=3.98 E-value=2.2e+02 Score=11.42 Aligned_cols=13 Identities=31% Similarity=0.733 Sum_probs=0.0 Q ss_pred CCCCCCEEEEEEC Q ss_conf 1037972599727 Q gi|254780133|r 45 MIRGDNPCLIVDN 57 (63) Q Consensus 45 mirgdnpclivdn 57 (63) +|||||--+|+-+ T Consensus 100 ~iRGd~VvlI~~~ 112 (118) T 1b34_B 100 FLRGDSVIVVLRN 112 (118) T ss_dssp EECGGGEEEEEEC T ss_pred EEECCEEEEEECC T ss_conf 9929989999668 No 9 >3k2y_A Uncharacterized protein LP_0118; nucleic acid binding,zinc ION binding, structural genomics, PSI-2, protein structure initiative; 2.40A {Lactobacillus plantarum} Probab=3.92 E-value=1.7e+02 Score=12.09 Aligned_cols=27 Identities=15% Similarity=0.190 Sum_probs=0.0 Q ss_pred CCEEEEEECCCCCCCEEEEEECCCCCC Q ss_conf 430687501103797259972788657 Q gi|254780133|r 36 EGAIYRFEPMIRGDNPCLIVDNDNPLD 62 (63) Q Consensus 36 egaiyrfepmirgdnpclivdndnpld 62 (63) +++..++..+-.|+--.|+-+-+||.| T Consensus 20 ~~~~~~~~~L~~G~~l~L~rEp~N~~D 46 (109) T 3k2y_A 20 DDIVATLTTLRVGMAVLLQRESGNQYD 46 (109) T ss_dssp TTHHHHTTSCCTTCEEEEEECTTCSSC T ss_pred CCHHHHHHCCCCCCEEEEEECCCCCCC T ss_conf 686678731899999999989999889 No 10 >2gix_A Inward rectifier potassium channel 2; cytoplasmic domains of KIR2.1, andersen'S mutation, metal transport; 2.02A {Mus musculus} Probab=3.83 E-value=2.3e+02 Score=11.35 Aligned_cols=20 Identities=25% Similarity=0.443 Sum_probs=0.0 Q ss_pred EEEECCCCCCCEEEEEECCC Q ss_conf 87501103797259972788 Q gi|254780133|r 40 YRFEPMIRGDNPCLIVDNDN 59 (63) Q Consensus 40 yrfepmirgdnpclivdndn 59 (63) +||+||+..+.-.+.||..+ T Consensus 161 ~rF~div~~~~g~~~VD~s~ 180 (208) T 2gix_A 161 HRYEPVLFEEKHYYKVDYSR 180 (208) T ss_dssp EEECCCEEECSSSEEEEGGG T ss_pred CEEEEEEEECCCCEEEEHHH T ss_conf 79968899379928986688 Done!