Query         gi|254780133|ref|YP_003064546.1| hypothetical protein CLIBASIA_00060 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 63
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 13730
Date          Sun May 22 06:53:22 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780133.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d2joza1 b.60.1.1 (A:2-127) Hyp  23.0      23  0.0017   15.4   2.3   39   19-57     62-101 (126)
  2 d1knxa1 c.98.2.1 (A:1-132) HPr  13.3      24  0.0017   15.4   0.5   23   38-60     72-94  (132)
  3 d1t0ha_ b.34.2.1 (A:) SH3-like  12.9      19  0.0014   15.9  -0.1   17   36-52     24-40  (96)
  4 d2efva1 a.43.1.12 (A:6-87) Unc   8.6      26  0.0019   15.1  -0.6   21    1-21      2-22  (82)
  5 d1lf6a2 b.30.5.5 (A:11-287) Ba   8.1      60  0.0044   13.2   1.0   25    7-31     52-76  (277)
  6 d1co4a_ g.47.1.1 (A:) Zinc dom   5.6      96   0.007   12.1   1.0   29   33-61      2-30  (42)
  7 d1oeyj_ d.15.2.2 (J:) Neutroph   4.4 1.2E+02  0.0086   11.6   1.6   12   14-25     15-26  (105)
  8 d2b3ya2 c.83.1.1 (A:2-630) Iro   4.3      40  0.0029   14.1  -1.6   14   19-32    429-442 (629)
  9 d1b34b_ b.38.1.1 (B:) D2 core    4.3 1.2E+02  0.0089   11.5   1.2   13   45-57     75-87  (93)
 10 d1f0la2 d.166.1.1 (A:1-187) Di   4.2 1.1E+02  0.0081   11.8   0.5    7   55-61     67-73  (187)

No 1  
>d2joza1 b.60.1.1 (A:2-127) Hypothetical protein YxeF {Bacillus subtilis [TaxId: 1423]}
Probab=22.97  E-value=23  Score=15.41  Aligned_cols=39  Identities=33%  Similarity=0.542  Sum_probs=30.9

Q ss_pred             EEEEEEECCCCEEEEEECCEEEEEEC-CCCCCCEEEEEEC
Q ss_conf             46888606774799997430687501-1037972599727
Q gi|254780133|r   19 DIAVIASETNTRIEIELEGAIYRFEP-MIRGDNPCLIVDN   57 (63)
Q Consensus        19 diaviasetntrieielegaiyrfep-mirgdnpclivdn   57 (63)
                      -..||...|.-.|||+.-|.-|-... +-||.|-.||-..
T Consensus        62 ~ykvisq~tdgsiei~ylg~~~p~kstlkrg~n~tliw~~  101 (126)
T d2joza1          62 AYKVISQSTDGSIEIQYLGPYYPLKSTLKRGENGTLIWEQ  101 (126)
T ss_dssp             EEEEEECCSSSEEEEEEESTTCSCEEEEEECSTTCEEEEE
T ss_pred             HHHHHHCCCCCEEEEEECCCCCCHHHHHHCCCCCCEEEEE
T ss_conf             5664002688718889737985335687378888178985


No 2  
>d1knxa1 c.98.2.1 (A:1-132) HPr kinase/phoshatase HprK N-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}
Probab=13.32  E-value=24  Score=15.36  Aligned_cols=23  Identities=9%  Similarity=0.226  Sum_probs=18.3

Q ss_pred             EEEEEECCCCCCCEEEEEECCCC
Q ss_conf             06875011037972599727886
Q gi|254780133|r   38 AIYRFEPMIRGDNPCLIVDNDNP   60 (63)
Q Consensus        38 aiyrfepmirgdnpclivdndnp   60 (63)
                      ...+++-|...+-||+|+-.+..
T Consensus        72 r~~~l~~l~~~~~PciIvt~~~~   94 (132)
T d1knxa1          72 QQQILHNLLKLNPPAIILTKSFT   94 (132)
T ss_dssp             HTTTHHHHHTTCCSCEEEETTTC
T ss_pred             HHHHHHHHHCCCCCEEEEECCCC
T ss_conf             99999998476998899979799


No 3  
>d1t0ha_ b.34.2.1 (A:) SH3-like domain of the L-type calcium channel {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=12.94  E-value=19  Score=15.91  Aligned_cols=17  Identities=18%  Similarity=0.239  Sum_probs=14.0

Q ss_pred             CCEEEEEECCCCCCCEE
Q ss_conf             43068750110379725
Q gi|254780133|r   36 EGAIYRFEPMIRGDNPC   52 (63)
Q Consensus        36 egaiyrfepmirgdnpc   52 (63)
                      --|+|.|+|..-+++||
T Consensus        24 vrAlydY~~~~dd~~P~   40 (96)
T d1t0ha_          24 VRTNVRYSAAQEDDVPV   40 (96)
T ss_dssp             EEESSCBCCCGGGCCSS
T ss_pred             EEEEECCCCCCCCCCCC
T ss_conf             99910348977887766


No 4  
>d2efva1 a.43.1.12 (A:6-87) Uncharacterized protein MJ0366 {Methanococcus jannaschii [TaxId: 2190]}
Probab=8.64  E-value=26  Score=15.14  Aligned_cols=21  Identities=29%  Similarity=0.488  Sum_probs=16.2

Q ss_pred             CCCCCCCEEEEEEEEECEEEE
Q ss_conf             973234315557765111468
Q gi|254780133|r    1 MTEKANKRYSLIRRVDIRDIA   21 (63)
Q Consensus         1 mtekankryslirrvdirdia   21 (63)
                      |.||-+.-++|+..+|-|++-
T Consensus         2 ~~~k~r~~f~L~~~id~r~lR   22 (82)
T d2efva1           2 MKEKKRATFYLYKNIDGRKLR   22 (82)
T ss_dssp             CCCCCEEEEEESSCCCHHHHH
T ss_pred             CCCCCCCEEEEEECCCHHHHH
T ss_conf             431333358876617788999


No 5  
>d1lf6a2 b.30.5.5 (A:11-287) Bacterial glucoamylase, N-terminal domain {Thermoanaerobacterium thermosaccharolyticum [TaxId: 1517]}
Probab=8.11  E-value=60  Score=13.21  Aligned_cols=25  Identities=20%  Similarity=0.445  Sum_probs=15.4

Q ss_pred             CEEEEEEEEECEEEEEEEECCCCEE
Q ss_conf             3155577651114688860677479
Q gi|254780133|r    7 KRYSLIRRVDIRDIAVIASETNTRI   31 (63)
Q Consensus         7 kryslirrvdirdiaviasetntri   31 (63)
                      -.|.+|-...|||.-.+.+..++..
T Consensus        52 vyyP~id~~qirdLqflVtdg~~f~   76 (277)
T d1lf6a2          52 VYYPTIDTADVKEIKFIVTDGKSFV   76 (277)
T ss_dssp             EECSSTTCEEEEEEEEEEECSSSCC
T ss_pred             EECCCCCCCCCCCEEEEEECCCCCE
T ss_conf             6515778724000059997588523


No 6  
>d1co4a_ g.47.1.1 (A:) Zinc domain conserved in yeast copper-regulated transcription factors {Synthetic}
Probab=5.60  E-value=96  Score=12.10  Aligned_cols=29  Identities=24%  Similarity=0.500  Sum_probs=17.6

Q ss_pred             EEECCEEEEEECCCCCCCEEEEEECCCCC
Q ss_conf             99743068750110379725997278865
Q gi|254780133|r   33 IELEGAIYRFEPMIRGDNPCLIVDNDNPL   61 (63)
Q Consensus        33 ielegaiyrfepmirgdnpclivdndnpl   61 (63)
                      +-..|.-|--|+-|||.------.+|.||
T Consensus         2 vli~g~KyAC~~CIRGHRsS~C~H~dRpL   30 (42)
T d1co4a_           2 VVINGVKYACDSCIKSHKAAQCEHNDRPL   30 (42)
T ss_dssp             EEETTEEEEETTTTTTSGGGGCCCCSSCE
T ss_pred             EEECCEEEEHHHHHCCCCCCCCCCCCCCC
T ss_conf             67878067476664715326442588645


No 7  
>d1oeyj_ d.15.2.2 (J:) Neutrophil cytosol factor 4 (p40phox component of NADPH oxidase) {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.40  E-value=1.2e+02  Score=11.61  Aligned_cols=12  Identities=42%  Similarity=0.434  Sum_probs=8.6

Q ss_pred             EEECEEEEEEEE
Q ss_conf             651114688860
Q gi|254780133|r   14 RVDIRDIAVIAS   25 (63)
Q Consensus        14 rvdirdiavias   25 (63)
                      .+++|||+|-..
T Consensus        15 ~~~~rDI~veed   26 (105)
T d1oeyj_          15 ISTIKDIAVEED   26 (105)
T ss_dssp             EEEEEEEEECSC
T ss_pred             CCEEEEEEECCC
T ss_conf             640312787200


No 8  
>d2b3ya2 c.83.1.1 (A:2-630) Iron-responsive element binding protein 1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.35  E-value=40  Score=14.15  Aligned_cols=14  Identities=50%  Similarity=0.304  Sum_probs=0.0

Q ss_pred             EEEEEEECCCCEEE
Q ss_conf             46888606774799
Q gi|254780133|r   19 DIAVIASETNTRIE   32 (63)
Q Consensus        19 diaviasetntrie   32 (63)
                      ++|.|.|-||+|++
T Consensus       429 ~ia~IgSCTN~s~~  442 (629)
T d2b3ya2         429 VIAAITSCTNTSNP  442 (629)
T ss_dssp             EEEEECCHHHHTCH
T ss_pred             EEEEEECCCCCCCH
T ss_conf             79999667788817


No 9  
>d1b34b_ b.38.1.1 (B:) D2 core SNRNP protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.25  E-value=1.2e+02  Score=11.55  Aligned_cols=13  Identities=31%  Similarity=0.733  Sum_probs=0.0

Q ss_pred             CCCCCCEEEEEEC
Q ss_conf             1037972599727
Q gi|254780133|r   45 MIRGDNPCLIVDN   57 (63)
Q Consensus        45 mirgdnpclivdn   57 (63)
                      ++||||--+|..+
T Consensus        75 liRGdnVv~I~~~   87 (93)
T d1b34b_          75 FLRGDSVIVVLRN   87 (93)
T ss_dssp             EECGGGEEEEEEC
T ss_pred             EEECCEEEEEECC
T ss_conf             9919999999748


No 10 
>d1f0la2 d.166.1.1 (A:1-187) Diphtheria toxin, N-terminal domain {Corynebacterium diphtheriae [TaxId: 1717]}
Probab=4.17  E-value=1.1e+02  Score=11.75  Aligned_cols=7  Identities=86%  Similarity=1.426  Sum_probs=0.0

Q ss_pred             EECCCCC
Q ss_conf             7278865
Q gi|254780133|r   55 VDNDNPL   61 (63)
Q Consensus        55 vdndnpl   61 (63)
                      |||.|||
T Consensus        67 vdnenpl   73 (187)
T d1f0la2          67 VDNENPL   73 (187)
T ss_dssp             BCTTSTT
T ss_pred             CCCCCCC
T ss_conf             3688977


Done!