HHsearch alignment for GI: 254780134 and conserved domain: COG4342
>COG4342 Uncharacterized protein conserved in archaea [Function unknown].
Probab=98.83 E-value=2.6e-07 Score=66.05 Aligned_cols=174 Identities=14% Similarity=0.187 Sum_probs=109.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC----CCCCCCCCCCHHHHHHHHHHH-CCCCHHHHHHHHHHHCCCC
Q ss_conf 89999999999999644552001056651034643----244442116523445666640-3780899998989861887
Q gi|254780134|r 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK----RKTEGIRPWTKEDMQQFKSFW-SEGSQPRLAFEFLLYSGLR 205 (348)
Q Consensus 131 ~t~n~~~~~l~~~~~~a~~~~~i~~NP~~~v~~~~----~~~~~~~~~t~~ei~~~~~~~-~~~~~~~~~~~l~~~TG~R 205 (348)
T Consensus 75 ~~kdKy~kA~R~f~~fl~~rgiise~~Ae~lrk~lk~k~~~g~dlyIp~de~ir~~~~l~r~~~e~~y~v~~ll~~SGaR 154 (291)
T COG4342 75 REKDKYQKAYRLFIKFLTSRGIISEEFAEKLRKPLKVKKSNGVDLYIPSDEEIRATEELAREYSERAYLVYLLLLFSGAR 154 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCEECCCHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCH
T ss_conf 10057999999999999870413399999999986457678863324987999889999988540189999999863430
Q ss_pred CCCCCCCCCCEEEEEC---------CC---CCCCCCHH-HHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 3100256640144302---------33---21133102-43311216899999642013322112224577587789999
Q gi|254780134|r 206 CSDSCRAGVQHLQNNI---------FS---IKTQKTGT-IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIW 272 (348)
Q Consensus 206 ~~Ei~~L~~~did~~~---------i~---~~~~Kt~~-~~~vpl~~~l~~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~ 272 (348)
T Consensus 155 Lse~v~~L~~-~D~s~~~~~~ng~~icyy~l~w~rg~K~afyif~P~~~~~~l~kid--------------isy----~~ 215 (291)
T COG4342 155 LSEAVAVLRN-LDHSRLYCVVNGKVICYYPLSWSRGHKRAFYIFHPKDFAESLRKID--------------ISY----HR 215 (291)
T ss_pred HHHHHHHHHC-CCHHHHEEECCCEEEEEECCCHHHCCCCEEEEECCHHHHHHCHHCC--------------CHH----HH
T ss_conf 9999999967-1431202312873788501103204541156866366520011011--------------129----99
Q ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCCHH-HHHHHHHH
Q ss_conf 999999838899814026999999998489988999996499989-99999999
Q gi|254780134|r 273 FKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKG 325 (348)
Q Consensus 273 ~~~~~~~agi~~~~H~lRht~at~l~~~G~~~~~i~~~lGHss~~-~t~~Y~~~ 325 (348)
T Consensus 216 vq~~~~~~~V--k~kyiRkwv~nkmlelgvP~~VvdFIqGrk~~~V~~rHY~nL 267 (291)
T COG4342 216 VQRFENRRGV--KAKYIRKWVYNKMLELGVPEDVVDFIQGRKQSRVGTRHYANL 267 (291)
T ss_pred HHHHHHCCCC--HHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 9999860582--099999999999998099588999987467221578999999