HHsearch alignment for GI: 254780134 and conserved domain: COG4973
>COG4973 XerC Site-specific recombinase XerC [DNA replication, recombination, and repair].
Probab=100.00 E-value=1.2e-31 Score=224.26 Aligned_cols=255 Identities=16% Similarity=0.233 Sum_probs=213.2
Q ss_pred CHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHH---HHHCCCCHHHCCHHHHHHHHHHH---CCCHHHHHHHHHHHHH
Q ss_conf 789999999983554-3569788999999999999---99569995896999999988751---5997899999999999
Q gi|254780134|r 70 TLKWLISEYRKSAHW-GSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFLTSMRV 142 (348)
Q Consensus 70 Tl~~l~~~y~~~~~~-~~l~~~T~~~~~~~~~~~~---~~~g~~~l~~it~~~i~~~~~~~---~~~~~t~n~~~~~l~~ 142 (348)
T Consensus 5 ~~~~~~~~yl~~L~~Er~lS~hTl~~Y~rqL~~l~~~~~q~~~~~w~~ld~~~vr~~~a~~~~~Gl~a~SlA~rLSa~R~ 84 (299)
T COG4973 5 GMAADLDAYLRYLRVERQLSPHTLANYRRQLEALIALLAQMGLGSWQQLDPADVRAFVARSHRRGLSARSLARRLSALRS 84 (299)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 36788999999999861468888999999999999999972765666569999999999983188557789999999999
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHH---CCCCHHHHHHHHHHHCCCCCCCCCCCCCCEEE-
Q ss_conf 99644552001056651034643244442116523445666640---37808999989898618873100256640144-
Q gi|254780134|r 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ- 218 (348)
Q Consensus 143 ~~~~a~~~~~i~~NP~~~v~~~~~~~~~~~~~t~~ei~~~~~~~---~~~~~~~~~~~l~~~TG~R~~Ei~~L~~~did- 218 (348)
T Consensus 85 f~~wLv~~g~l~~nPa~GvsaPK~~r~LPk~ld~d~~~~ll~~d~~dPlavRDrAllElmY~sGLRLSELvgLd~~~vdl 164 (299)
T COG4973 85 FYDWLVKQGELKANPAKGVSAPKQPRHLPKNLDVDEANRLLDIDGDDPLAVRDRALLELMYGSGLRLSELVGLDLKHVDL 164 (299)
T ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCC
T ss_conf 99999872764668645688988744377768999999996678999334789999999984370089884788444545
Q ss_pred -EECCCCCCCCCHHHHHHCCHHHHHHHHH----HH---CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC--CCCCH
Q ss_conf -3023321133102433112168999996----42---01332211222457758778999999999983889--98140
Q gi|254780134|r 219 -NNIFSIKTQKTGTIITVELPDGFMKLLA----MT---PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHG 288 (348)
Q Consensus 219 -~~~i~~~~~Kt~~~~~vpl~~~l~~~l~----~~---~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~agi~--~~~H~ 288 (348)
T Consensus 165 ~~geV-~V~GKGnKeR~vP~g~~A~~al~~WL~lR~~~a~~d~AlF~s~~G~Ris~R~iQkR~~~wgikqg~~~HvhPH~ 243 (299)
T COG4973 165 DEGEV-RVMGKGNKERRVPVGRKAVEALEHWLALRGLFASEDDALFLSRLGKRISARAIQKRLAQWGIKQGLNSHVHPHK 243 (299)
T ss_pred CCCEE-EEECCCCCEEECCCHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHH
T ss_conf 54258-99627873465352177999999998655103798760531036881648899999999998603221387687
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 2699999999848998899999649998999999999
Q gi|254780134|r 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 (348)
Q Consensus 289 lRht~at~l~~~G~~~~~i~~~lGHss~~~t~~Y~~~ 325 (348)
T Consensus 244 LRHSFAtHmLesSgDLRaVQELLGHanlsTTQIYThL 280 (299)
T COG4973 244 LRHSFATHMLESSGDLRAVQELLGHANLSTTQIYTHL 280 (299)
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHHC
T ss_conf 7778899998703548999998564651244432323