HHsearch alignment for GI: 254780134 and conserved domain: PHA00730

>PHA00730 int integrase.
Probab=98.64  E-value=6.6e-07  Score=63.38  Aligned_cols=182  Identities=19%  Similarity=0.246  Sum_probs=114.0

Q ss_pred             HCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHH
Q ss_conf             96999999988751599789999999999999644552001056651034643244442116523445666640378089
Q gi|254780134|r  113 KITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP  192 (348)
Q Consensus       113 ~it~~~i~~~~~~~~~~~~t~n~~~~~l~~~~~~a~~~~~i~~NP~~~v~~~~~~~~~~~~~t~~ei~~~~~~~~~~~~~  192 (348)
T Consensus       110 ~ise~T~K~Yv~~l~kp~~~sn~~~kA~r~f~~~~~~r~-----~~~~lK~kK~~p-Dl~VPT~eeVk~tL~~~key~~v  183 (322)
T PHA00730        110 KISEKTIKDYINCIKQPRKESNNCIKAYRLFYRFLLNRD-----PPKELKVKKTKP-DLRIPTLEEIKRTLQLVKEYENL  183 (322)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----CHHHHHHCCCCC-CCCCCCHHHHHHHHHHHCCCCCH
T ss_conf             676889999999987565540214999999999972246-----377652203688-62478889999999875047641


Q ss_pred             HHHHHHHHHCCCCCCCCCCCCCC-----EEEEECCCC---CCCCC-HHHHHHCCHHHHHHHHHHHCCCCCCCCCCC-CCC
Q ss_conf             99989898618873100256640-----144302332---11331-024331121689999964201332211222-457
Q gi|254780134|r  193 RLAFEFLLYSGLRCSDSCRAGVQ-----HLQNNIFSI---KTQKT-GTIITVELPDGFMKLLAMTPIGKETFFINN-DKQ  262 (348)
Q Consensus       193 ~~~~~l~~~TG~R~~Ei~~L~~~-----did~~~i~~---~~~Kt-~~~~~vpl~~~l~~~l~~~~~~~~~~~~~~-~g~  262 (348)
T Consensus       184 y~vYrllLESG~RlsEaLkvLn~y~p~~dv~e~~~~~y~L~w~Rg~K~~fy~fh-------------------it~Lk~~  244 (322)
T PHA00730        184 YLLYRLLLESGSRLSEALKVLNNYNPQNDIREDGFSIYILNWTRGQKKSFYLFH-------------------ITPLKQI  244 (322)
T ss_pred             HHHHHHHHHHCHHHHHHHHHHHCCCHHHHCCCCCEEEEEEHHHCCCCCEEEEEE-------------------ECCCEEE
T ss_conf             468999987130289999997414805430358769998322216775699999-------------------4254245


Q ss_pred             CCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCCHH-HHHHHHH
Q ss_conf             7587789999999999838899814026999999998489988999996499989-9999999
Q gi|254780134|r  263 KMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTK  324 (348)
Q Consensus       263 ~~~~~~~~~~~~~~~~~agi~~~~H~lRht~at~l~~~G~~~~~i~~~lGHss~~-~t~~Y~~  324 (348)
T Consensus       245 ~It~~~i~~~~~~~-~--~v--~~KYiRKfvatKm~elgip~dvvdFiqGR~p~~ilt~HY~d  302 (322)
T PHA00730        245 KITKAYIDKYVRRL-N--LV--PPKYIRKFVATKMLELGIPSEVVDFIQGRTPSRILTKHYLD  302 (322)
T ss_pred             EECHHHHHHHHHCC-C--CC--CHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCHHHHHHHH
T ss_conf             66188886665404-6--68--78999999999999968968899996478855046899999