HHsearch alignment for GI: 254780134 and conserved domain: PHA00730
>PHA00730 int integrase.
Probab=98.64 E-value=6.6e-07 Score=63.38 Aligned_cols=182 Identities=19% Similarity=0.246 Sum_probs=114.0
Q ss_pred HCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHH
Q ss_conf 96999999988751599789999999999999644552001056651034643244442116523445666640378089
Q gi|254780134|r 113 KITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192 (348)
Q Consensus 113 ~it~~~i~~~~~~~~~~~~t~n~~~~~l~~~~~~a~~~~~i~~NP~~~v~~~~~~~~~~~~~t~~ei~~~~~~~~~~~~~ 192 (348)
T Consensus 110 ~ise~T~K~Yv~~l~kp~~~sn~~~kA~r~f~~~~~~r~-----~~~~lK~kK~~p-Dl~VPT~eeVk~tL~~~key~~v 183 (322)
T PHA00730 110 KISEKTIKDYINCIKQPRKESNNCIKAYRLFYRFLLNRD-----PPKELKVKKTKP-DLRIPTLEEIKRTLQLVKEYENL 183 (322)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----CHHHHHHCCCCC-CCCCCCHHHHHHHHHHHCCCCCH
T ss_conf 676889999999987565540214999999999972246-----377652203688-62478889999999875047641
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCC-----EEEEECCCC---CCCCC-HHHHHHCCHHHHHHHHHHHCCCCCCCCCCC-CCC
Q ss_conf 99989898618873100256640-----144302332---11331-024331121689999964201332211222-457
Q gi|254780134|r 193 RLAFEFLLYSGLRCSDSCRAGVQ-----HLQNNIFSI---KTQKT-GTIITVELPDGFMKLLAMTPIGKETFFINN-DKQ 262 (348)
Q Consensus 193 ~~~~~l~~~TG~R~~Ei~~L~~~-----did~~~i~~---~~~Kt-~~~~~vpl~~~l~~~l~~~~~~~~~~~~~~-~g~ 262 (348)
T Consensus 184 y~vYrllLESG~RlsEaLkvLn~y~p~~dv~e~~~~~y~L~w~Rg~K~~fy~fh-------------------it~Lk~~ 244 (322)
T PHA00730 184 YLLYRLLLESGSRLSEALKVLNNYNPQNDIREDGFSIYILNWTRGQKKSFYLFH-------------------ITPLKQI 244 (322)
T ss_pred HHHHHHHHHHCHHHHHHHHHHHCCCHHHHCCCCCEEEEEEHHHCCCCCEEEEEE-------------------ECCCEEE
T ss_conf 468999987130289999997414805430358769998322216775699999-------------------4254245
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCCHH-HHHHHHH
Q ss_conf 7587789999999999838899814026999999998489988999996499989-9999999
Q gi|254780134|r 263 KMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTK 324 (348)
Q Consensus 263 ~~~~~~~~~~~~~~~~~agi~~~~H~lRht~at~l~~~G~~~~~i~~~lGHss~~-~t~~Y~~ 324 (348)
T Consensus 245 ~It~~~i~~~~~~~-~--~v--~~KYiRKfvatKm~elgip~dvvdFiqGR~p~~ilt~HY~d 302 (322)
T PHA00730 245 KITKAYIDKYVRRL-N--LV--PPKYIRKFVATKMLELGIPSEVVDFIQGRTPSRILTKHYLD 302 (322)
T ss_pred EECHHHHHHHHHCC-C--CC--CHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCHHHHHHHH
T ss_conf 66188886665404-6--68--78999999999999968968899996478855046899999