HHsearch alignment for GI: 254780134 and conserved domain: PRK00283
>PRK00283 xerD site-specific tyrosine recombinase XerD; Reviewed.
Probab=100.00 E-value=4.5e-44 Score=305.05 Aligned_cols=254 Identities=17% Similarity=0.219 Sum_probs=217.4
Q ss_pred HHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHCC--CCHHHCCHHHHHHHHHHH---CCCHHHHHHHHHHHHHHHH
Q ss_conf 9999999983554-356978899999999999999569--995896999999988751---5997899999999999996
Q gi|254780134|r 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESR---KHTPSSAIQFLTSMRVLFK 145 (348)
Q Consensus 72 ~~l~~~y~~~~~~-~~l~~~T~~~~~~~~~~~~~~~g~--~~l~~it~~~i~~~~~~~---~~~~~t~n~~~~~l~~~~~ 145 (348)
T Consensus 3 ~~~i~~fl~~L~~erg~S~~Ti~~Y~~~l~~f~~~l~~~~~~~~~it~~~i~~y~~~L~~~~~s~~Tin~~l~~lr~~~~ 82 (296)
T PRK00283 3 RALIEQFLDALWVERGLAENTLSSYRRDLELFAEWLAARGLSLAEATRDDLQAFLAELAEGGYKATSSARRLSALRRFFQ 82 (296)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf 89999999999998790799999999999999999987599947799999999999998779999999999999997479
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCC----HHHHHHHHHHHCCCCCCCCCCCCCCEEE--E
Q ss_conf 445520010566510346432444421165234456666403780----8999989898618873100256640144--3
Q gi|254780134|r 146 WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQ--N 219 (348)
Q Consensus 146 ~a~~~~~i~~NP~~~v~~~~~~~~~~~~~t~~ei~~~~~~~~~~~----~~~~~~~l~~~TG~R~~Ei~~L~~~did--~ 219 (348)
T Consensus 83 ~a~~~~~i~~np~~~i~~~k~~~~~~~~lt~eei~~ll~~~~~~~~~~~Rd~ail~ll~~tGlR~~El~~L~~~di~~~~ 162 (296)
T PRK00283 83 FLLREGLREDDPTALLDSPKLPRRLPKTLSEAQVEALLDAPDIDTPLGLRDRAMLELLYATGLRVSELVGLTLDDVSLRQ 162 (296)
T ss_pred HHHHCCCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHCCCCC
T ss_conf 99870743348786366778888897414378999987323778657689999999999838761202178599923577
Q ss_pred ECCCCCCCCCHHHHHHCCHHHHHHHHHHH----------CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC---CCC
Q ss_conf 02332113310243311216899999642----------01332211222457758778999999999983889---981
Q gi|254780134|r 220 NIFSIKTQKTGTIITVELPDGFMKLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSA 286 (348)
Q Consensus 220 ~~i~~~~~Kt~~~~~vpl~~~l~~~l~~~----------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~agi~---~~~ 286 (348)
T Consensus 163 ~~i~v-~~Kg~K~R~vpl~~~~~~~l~~yl~~~r~~~~~~~~~~~lF~~~~g~~l~~~~~~~~~~~~~~~agi~~~~~tp 241 (296)
T PRK00283 163 GVVRV-TGKGNKERLVPLGEEAVYAIERYLERGRPALLGGRSSDALFPSARGGQLTRQTFWHRIKHYAKRAGIDPKKLSP 241 (296)
T ss_pred CCEEE-ECCCCEEEEEECCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 95577-17898036997088999999999998657751489997475428898467999999999999980899998899
Q ss_pred CHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 4026999999998489988999996499989999999999
Q gi|254780134|r 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 (348)
Q Consensus 287 H~lRht~at~l~~~G~~~~~i~~~lGHss~~~t~~Y~~~~ 326 (348)
T Consensus 242 H~lRHt~at~ll~~G~~l~~i~~~LGHssi~TT~~Y~h~~ 281 (296)
T PRK00283 242 HVLRHAFATHLLNHGADLRVVQELLGHSDISTTQIYTHVA 281 (296)
T ss_pred CCCHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHCCC
T ss_conf 8787999999998798999999882899889999988689