HHsearch alignment for GI: 254780134 and conserved domain: PRK01287
>PRK01287 xerC site-specific tyrosine recombinase XerC; Reviewed.
Probab=100.00 E-value=1.7e-44 Score=307.89 Aligned_cols=260 Identities=17% Similarity=0.194 Sum_probs=221.5
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH---CCCCHHHCCHHHHHHHHHHHC---------CCHHHHH
Q ss_conf 4487899999999835543569788999999999999995---699958969999999887515---------9978999
Q gi|254780134|r 67 KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRK---------HTPSSAI 134 (348)
Q Consensus 67 ~~~Tl~~l~~~y~~~~~~~~l~~~T~~~~~~~~~~~~~~~---g~~~l~~it~~~i~~~~~~~~---------~~~~t~n 134 (348)
T Consensus 19 ~p~~~~~ll~~Fl~yL~er~~S~~Ti~aY~~dL~~F~~fl~~~g~~~~~~vt~~~l~~y~~~L~~~r~~~g~~ls~~T~~ 98 (361)
T PRK01287 19 DPKSLYALLLRFVEWLQERNWSERTLKVQTHHTYHFILWCEERGLYYAADVTRPVLERYQRYLYQYRKTNGEPLSQGTQR 98 (361)
T ss_pred CCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCHHHHHHHHHHHHHHHHCCCCCCCHHHHH
T ss_conf 96779999999999999839989999999999999999999848999375899999999999998654068877999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC-CCCCHHHHHHHHHHHCCC----CHHHHHHHHHHHCCCCCCCC
Q ss_conf 9999999999644552001056651034643244442-116523445666640378----08999989898618873100
Q gi|254780134|r 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI-RPWTKEDMQQFKSFWSEG----SQPRLAFEFLLYSGLRCSDS 209 (348)
Q Consensus 135 ~~~~~l~~~~~~a~~~~~i~~NP~~~v~~~~~~~~~~-~~~t~~ei~~~~~~~~~~----~~~~~~~~l~~~TG~R~~Ei 209 (348)
T Consensus 99 r~LsalrsFf~~l~~~~~i~~nP~~~i~~PK~~k~lP~~~Ls~~Ev~~LL~~~~~~~~~g~RDrAil~LLy~tGLRvsEl 178 (361)
T PRK01287 99 TQLTPLRVWFKWLTKQNLILYNPAADIELPKLEKRLPRYILSIDETEAILAAPDPTTLQGLRDRALLELLWSTGIRRSEL 178 (361)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCHHHHH
T ss_conf 99999999999999879935375876327776555777679999999998474558806599999999999937779888
Q ss_pred CCCCCCEEEE--ECCCCCCCCCHHHHHHCCHHHHHHHHHHH----------CCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 2566401443--02332113310243311216899999642----------01332211222457758778999999999
Q gi|254780134|r 210 CRAGVQHLQN--NIFSIKTQKTGTIITVELPDGFMKLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKA 277 (348)
Q Consensus 210 ~~L~~~did~--~~i~~~~~Kt~~~~~vpl~~~l~~~l~~~----------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 277 (348)
T Consensus 179 ~~L~~~DId~~~~~i~v~~GKG~KeR~VPl~~~~~~~L~~Yl~~~r~~~~~~~~~~~lFvs~~G~~ls~~~v~~~vk~~~ 258 (361)
T PRK01287 179 ARLDLYDVDGSRKTVTVRQGKGNKDRVVPLGERALVWLQRYLQQVRPQLIVNPDSGALFVAMDGDGLQRNGITNLVGRYI 258 (361)
T ss_pred HHCCCCCCCCCCCEEEEECCCCCCEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCHHHHHHHHHHHH
T ss_conf 71666466788883887348887400202769999999999998617641278877521288999587899999999999
Q ss_pred HHCCCCC--CCCHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 9838899--814026999999998489988999996499989999999999
Q gi|254780134|r 278 TKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 (348)
Q Consensus 278 ~~agi~~--~~H~lRht~at~l~~~G~~~~~i~~~lGHss~~~t~~Y~~~~ 326 (348)
T Consensus 259 ~~agi~k~~~pH~LRHTfAT~lL~~GadL~~VQelLGHasi~TTqiYtHv~ 309 (361)
T PRK01287 259 RAAGIEKKGACHLFRHAMATQMLENGADLRWIQAMLGHASLETTQIYTQVS 309 (361)
T ss_pred HHCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHCCC
T ss_conf 980899999821059999999998699999999986899778999998479