HHsearch alignment for GI: 254780134 and conserved domain: PRK05084
>PRK05084 xerS site-specific tyrosine recombinase XerS; Reviewed.
Probab=100.00 E-value=3.8e-39 Score=273.06 Aligned_cols=266 Identities=15% Similarity=0.223 Sum_probs=206.7
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCC-----------C---CHHHCCHHHHHHHHHHH----------
Q ss_conf 89999999983554356978899999999999999569-----------9---95896999999988751----------
Q gi|254780134|r 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD-----------F---DYRKITTKHIRSGVESR---------- 126 (348)
Q Consensus 71 l~~l~~~y~~~~~~~~l~~~T~~~~~~~~~~~~~~~g~-----------~---~l~~it~~~i~~~~~~~---------- 126 (348)
T Consensus 17 ~P~~i~ey~~~~~~~~~Sp~Ti~~Y~~DL~~F~~fL~~~~~~~~~~~~~i~~~~l~~l~~~di~~y~~~L~~~~~~~~~~ 96 (360)
T PRK05084 17 MPWYVLEYYQSKLATPYSPTTLYEYLTEYRRFFNWLIDEGLTVATKIKDIPLSTLENLTKKDVELFILYLRERPSLNGHL 96 (360)
T ss_pred CHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHCCCCCCCC
T ss_conf 70999999998860598989999999999999999986498755563327789997566999999999998522234321
Q ss_pred ---CCCHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHCCCCCCCCCC--------CCCCCCHHHHHHHHHHHCC
Q ss_conf ---5997899999999999996445520-------010566510346432444--------4211652344566664037
Q gi|254780134|r 127 ---KHTPSSAIQFLTSMRVLFKWAVRQE-------YVAINPCLSVERPKRKTE--------GIRPWTKEDMQQFKSFWSE 188 (348)
Q Consensus 127 ---~~~~~t~n~~~~~l~~~~~~a~~~~-------~i~~NP~~~v~~~~~~~~--------~~~~~t~~ei~~~~~~~~~ 188 (348)
T Consensus 97 ~~~~~s~~tinRklsaLrsFfkyL~~~~~~~~~~~y~~~n~~~~i~~~k~~~~~~~r~~~~~~~~l~~~e~~~ll~~i~~ 176 (360)
T PRK05084 97 TGEGVSQTTINRTLSALKSLFKYLTEETENEDGEPYFYRNVMKKISLKKKKETLAARAENLKQKLFLGDETVEFLDFIDN 176 (360)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCHHHHCCCCCCCCCCCCCCHHCCCCCCCHHHHHHHHHHHHH
T ss_conf 22576788999999999999999998520223221331152652577765321223100001200556789999976524
Q ss_pred -----------------CCHHHHHHHHHHHCCCCCCCCCCCCCCEEE--EECCCCCCCCCHHHHHHCCHHHHHHHHHHHC
Q ss_conf -----------------808999989898618873100256640144--3023321133102433112168999996420
Q gi|254780134|r 189 -----------------GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMTP 249 (348)
Q Consensus 189 -----------------~~~~~~~~~l~~~TG~R~~Ei~~L~~~did--~~~i~~~~~Kt~~~~~vpl~~~l~~~l~~~~ 249 (348)
T Consensus 177 ~~~~~l~~~~~~~~~~~~~RD~aIi~ll~~tGlRvsEl~~L~~~DId~~~~~i~V~-~Kg~K~r~vpi~~~~~~~l~~yl 255 (360)
T PRK05084 177 EYEQKLSNRALSSFKKNKERDLAIIALLLGSGIRVSELVNLDLKDLNLKQMTIDVT-RKGGKRDSVPIAPFALPYLEEYL 255 (360)
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHCCCHHHCCCCCCEEEEE-ECCCCEEEEECCHHHHHHHHHHH
T ss_conf 43412025554430123679999999999858799999769799858789979998-47984468877899999999999
Q ss_pred ----------CCCCCCCCCCCC---CCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCCH
Q ss_conf ----------133221122245---7758778999999999983889981402699999999848998899999649998
Q gi|254780134|r 250 ----------IGKETFFINNDK---QKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTV 316 (348)
Q Consensus 250 ----------~~~~~~~~~~~g---~~~~~~~~~~~~~~~~~~agi~~~~H~lRht~at~l~~~G~~~~~i~~~lGHss~ 316 (348)
T Consensus 256 ~~r~~~~~~~~~~~~lF~~~~~~~~~rls~~~i~~~v~k~~~~~~~~itpH~LRHtfAT~Ll~~G~dl~~vq~lLGH~si 335 (360)
T PRK05084 256 KIRAQRYKAEKNDTALFLTKYRGKPNRISASAIEKMVAKYSEAFGVRVTPHKLRHTLATRLYDATKDQVLVADQLGHTST 335 (360)
T ss_pred HHHHHHCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCCH
T ss_conf 97087435778888157646899888224999999999999867999784132999999999879999999998589987
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHH
Q ss_conf 99999999998-9999999999998
Q gi|254780134|r 317 DQAETYTKGAD-RIRLGIKNSRRIS 340 (348)
Q Consensus 317 ~~t~~Y~~~~~-~~r~a~~a~~~l~ 340 (348)
T Consensus 336 ~TT~iYthv~~~~~r---~a~~~l~ 357 (360)
T PRK05084 336 QVTDLYTHIVNDEQK---DALDKLE 357 (360)
T ss_pred HHHHHHHCCCHHHHH---HHHHHHC
T ss_conf 999998868999999---9998636