HHsearch alignment for GI: 254780134 and conserved domain: PRK09871
>PRK09871 tyrosine recombinase; Provisional.
Probab=99.97 E-value=1.1e-29 Score=211.63 Aligned_cols=156 Identities=17% Similarity=0.166 Sum_probs=134.2
Q ss_pred CCCCCCHHHHHHHHHHHC---CCCHHHHHHHHHHHCCCCCCCCCCCCCCEEE--EECCCCCCCCCHHHHHHCCHHHHHHH
Q ss_conf 421165234456666403---7808999989898618873100256640144--30233211331024331121689999
Q gi|254780134|r 170 GIRPWTKEDMQQFKSFWS---EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKL 244 (348)
Q Consensus 170 ~~~~~t~~ei~~~~~~~~---~~~~~~~~~~l~~~TG~R~~Ei~~L~~~did--~~~i~~~~~Kt~~~~~vpl~~~l~~~ 244 (348)
T Consensus 3 ~~ryLt~~Ev~~Ll~a~~~~~~~~Rd~aii~ll~~tGlR~sEl~~L~~~Did~~~~~i~i~~~k~g~~~~~pl~~~~~~~ 82 (198)
T PRK09871 3 KRRYLTGKEVQAMMQAVCYGATGARDYCLILLAYRHGMRISELLDLHYQDLDLNEGRINIRRLKNGFSTVHPLRFDEREA 82 (198)
T ss_pred CCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCHHHHHHCCCHHHCCCCCCEEEEEECCCCEEEEEECCHHHHHH
T ss_conf 66769999999998441439854489999999999786899997888877587799699997899748987486999999
Q ss_pred HHHH---------CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC--CCCCHHHHHHHHHHHHCCCCHHHHHHHHCC
Q ss_conf 9642---------01332211222457758778999999999983889--981402699999999848998899999649
Q gi|254780134|r 245 LAMT---------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGW 313 (348)
Q Consensus 245 l~~~---------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~agi~--~~~H~lRht~at~l~~~G~~~~~i~~~lGH 313 (348)
T Consensus 83 l~~~~~~r~~~~~~~~~~~lF~s~~G~~ls~~~~~~~ik~~~~~aG~~~~~~pH~LRHTfAt~Ll~~G~dl~~Iq~lLGH 162 (198)
T PRK09871 83 VERWTQERANWKGADRTDAIFISRRGSRLSRQQAYRIIRDAGIEAGTVTQTHPHMLRHACGYELAERGADTRLIQDYLGH 162 (198)
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCC
T ss_conf 99999987775126778841435889947999999999999998499988899855799999999869999999999389
Q ss_pred CCHHHHHHHHHH
Q ss_conf 998999999999
Q gi|254780134|r 314 KTVDQAETYTKG 325 (348)
Q Consensus 314 ss~~~t~~Y~~~ 325 (348)
T Consensus 163 ssi~TT~~Yth~ 174 (198)
T PRK09871 163 RNIRHTVRYTAS 174 (198)
T ss_pred CCHHHHHHHHCC
T ss_conf 977899998858