HHsearch alignment for GI: 254780134 and conserved domain: TIGR02224

>TIGR02224 recomb_XerC tyrosine recombinase XerC; InterPro: IPR011931 The phage integrase family describes a number of recombinases with tyrosine active sites that transiently bind covalently to DNA. Many are associated with mobile DNA elements, including phage, transposons, and phase variation loci. This entry represents XerC, which is closely related to the other chromosomal protein XerD (IPR011932 from INTERPRO). XerC and XerD are site-specific recombinases which help resolve chromosome dimers to monomers for cell division after DNA replication. XerC and XerD interact with cell division protein FtsK .; GO: 0003677 DNA binding, 0006310 DNA recombination, 0007049 cell cycle, 0007059 chromosome segregation, 0015074 DNA integration, 0051301 cell division.
Probab=100.00  E-value=2.8e-45  Score=312.49  Aligned_cols=254  Identities=18%  Similarity=0.268  Sum_probs=214.7

Q ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH-------CC-C--CHHHCCHHHHHHHHHHH-----CCCHHHHHHHHHH
Q ss_conf             99999835543569788999999999999995-------69-9--95896999999988751-----5997899999999
Q gi|254780134|r   75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKS-------GD-F--DYRKITTKHIRSGVESR-----KHTPSSAIQFLTS  139 (348)
Q Consensus        75 ~~~y~~~~~~~~l~~~T~~~~~~~~~~~~~~~-------g~-~--~l~~it~~~i~~~~~~~-----~~~~~t~n~~~~~  139 (348)
T Consensus         3 fl~yL~~e--r~~S~hT~~aY~~DL~~f~~fl~~~~~~~~~~~~~~~~~~~~~d~R~~la~l~~~~~g~s~rS~~R~LSa   80 (313)
T TIGR02224         3 FLEYLRVE--RNYSPHTLRAYRRDLEAFLEFLEEHKQEEGGPLLASLAEVTAADLRSFLAELHAKERGLSRRSLARKLSA   80 (313)
T ss_pred             HHHHHHHH--HHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
T ss_conf             78999988--5000899999999999999999998775201110157624889999999999846578767689999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCC---------CHHHHHHHHHHHCCCCCCCCC
Q ss_conf             99999644552001056651034643244442116523445666640378---------089999898986188731002
Q gi|254780134|r  140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG---------SQPRLAFEFLLYSGLRCSDSC  210 (348)
Q Consensus       140 l~~~~~~a~~~~~i~~NP~~~v~~~~~~~~~~~~~t~~ei~~~~~~~~~~---------~~~~~~~~l~~~TG~R~~Ei~  210 (348)
T Consensus        81 lRsFy~~L~~~~~~~~nPa~~~~~PK~~~~LP~~L~~~~~~~ll~~~~~~~~~~~~~~~~RDrA~lEllYssGlRvSEl~  160 (313)
T TIGR02224        81 LRSFYRFLLRRGLIDANPAAGVRAPKKPKKLPKFLSEDEMEALLDAPEEDAEDREDWLALRDRAILELLYSSGLRVSELV  160 (313)
T ss_pred             HHHHHHHHHHCCCCCCCHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999872874022388722675446799888989999996012346666777899989999999987468999982


Q ss_pred             CCCCC-EE--EE--ECCCCCCCCCHHHHHHCCHHHHHHHHHH----HC-----CCC-----CCCCCCCCCCCCCHHHHHH
Q ss_conf             56640-14--43--0233211331024331121689999964----20-----133-----2211222457758778999
Q gi|254780134|r  211 RAGVQ-HL--QN--NIFSIKTQKTGTIITVELPDGFMKLLAM----TP-----IGK-----ETFFINNDKQKMNATQFSI  271 (348)
Q Consensus       211 ~L~~~-di--d~--~~i~~~~~Kt~~~~~vpl~~~l~~~l~~----~~-----~~~-----~~~~~~~~g~~~~~~~~~~  271 (348)
T Consensus       161 ~L~~~~D~d~~~~~~~vrV-~GKG~KeR~VP~G~~A~~al~~YL~~~r~~~~~~~~~~~~~~~LF~~~~G~rL~~R~v~~  239 (313)
T TIGR02224       161 GLDLSEDLDLDFSLGLVRV-RGKGNKERIVPFGSYARDALQAYLEERREPLLAKEPPAQDHDALFLNRRGGRLTPRGVRY  239 (313)
T ss_pred             CCCCCCCCCCHHCCCEEEE-EECCCCEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
T ss_conf             4771336473221476777-414881353031489999999998644721145667777522300178887257778999


Q ss_pred             HHHHHHHHCCCCC--CCCHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             9999999838899--814026999999998489988999996499989999999999899999
Q gi|254780134|r  272 WFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG  332 (348)
Q Consensus       272 ~~~~~~~~agi~~--~~H~lRht~at~l~~~G~~~~~i~~~lGHss~~~t~~Y~~~~~~~r~a  332 (348)
T Consensus       240 ~l~~~~~~~~l~~~~hPH~LRHSFATHLL~~gaDLRaVQELLGH~SLSTTQiYTHv-~~~~L~  301 (313)
T TIGR02224       240 RLQQLVAKAGLPKHVHPHALRHSFATHLLENGADLRAVQELLGHASLSTTQIYTHV-DFQHLA  301 (313)
T ss_pred             HHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHH-HHHHHH
T ss_conf             99999985688886787531131799997468835589897444643566798884-099999