HHsearch alignment for GI: 254780134 and conserved domain: cd00798

>cd00798 INT_XerDC XerD and XerC integrases, DNA breaking-rejoining enzymes, N- and C-terminal domains. XerD-like integrases are involved in the site-specific integration and excision of lysogenic bacteriophage genomes, transposition of conjugative transposons, termination of chromosomal replication, and stable plasmid inheritance. They share the same fold in their catalytic domain containing six conserved active site residues and the overall reaction mechanism with the DNA breaking-rejoining enzyme superfamily. In Escherichia coli, the Xer site-specific recombination system acts to convert dimeric chromosomes, which are formed by homologous recombination to monomers. Two related recombinases, XerC and XerD, bind cooperatively to a recombination site present in the E. coli chromosome. Each recombinase catalyzes the exchange of one pair of DNA strand in a reaction that proceeds through a Holliday junction intermediate. These enzymes can bridge two different and well-separated DNA sequen
Probab=100.00  E-value=3.7e-43  Score=299.11  Aligned_cols=248  Identities=19%  Similarity=0.257  Sum_probs=210.8

Q ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHHHHH---HCCCCHHHCCHHHHHHHHHHH---CCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99983554356978899999999999999---569995896999999988751---599789999999999999644552
Q gi|254780134|r   77 EYRKSAHWGSLAVNSRISFESYFDQIIRK---SGDFDYRKITTKHIRSGVESR---KHTPSSAIQFLTSMRVLFKWAVRQ  150 (348)
Q Consensus        77 ~y~~~~~~~~l~~~T~~~~~~~~~~~~~~---~g~~~l~~it~~~i~~~~~~~---~~~~~t~n~~~~~l~~~~~~a~~~  150 (348)
T Consensus         6 ~~l~~~--r~lS~~T~~~Y~~~l~~f~~~~~~~~~~~~~~i~~~~i~~~~~~L~~~~~s~~Ti~~~~~~l~~~~~~~~~~   83 (284)
T cd00798           6 DYLAVE--RGLSENTLAAYRRDLERFLEFLEERGILFPADVTPDDIRRFLAELKDQGLSARSIARKLSALRSFFKFLLRE   83 (284)
T ss_pred             HHHHHH--HCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHC
T ss_conf             999998--590799999999999999999998299994879999999999999876999999999999999999999865


Q ss_pred             HHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCC----HHHHHHHHHHHCCCCCCCCCCCCCCEEEE--ECCCC
Q ss_conf             0010566510346432444421165234456666403780----89999898986188731002566401443--02332
Q gi|254780134|r  151 EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSI  224 (348)
Q Consensus       151 ~~i~~NP~~~v~~~~~~~~~~~~~t~~ei~~~~~~~~~~~----~~~~~~~l~~~TG~R~~Ei~~L~~~did~--~~i~~  224 (348)
T Consensus        84 ~~i~~np~~~i~~~k~~~~~~~~l~~~ei~~ll~~~~~~~~~~~Rd~~i~~ll~~tGlR~~E~~~L~~~did~~~~~i~v  163 (284)
T cd00798          84 GLILANPAELIEPPKLKRSLPKVLTIEEVERLLAAPDGDTPLGLRDRALLELLYSTGLRVSELVGLKLSDVDLSRGLIRV  163 (284)
T ss_pred             CCCCCCCHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHCCCHHHCCCCCCEEEE
T ss_conf             87656823202578868778886799998999986323776779999999999996799244616969994766777999


Q ss_pred             CCCCCHHHHHHCCHHHHHHHHHHH----------CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC--CCCCHHHHH
Q ss_conf             113310243311216899999642----------01332211222457758778999999999983889--981402699
Q gi|254780134|r  225 KTQKTGTIITVELPDGFMKLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKF  292 (348)
Q Consensus       225 ~~~Kt~~~~~vpl~~~l~~~l~~~----------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~agi~--~~~H~lRht  292 (348)
T Consensus       164 -~~K~~k~r~vpl~~~~~~~l~~~~~~~~~~~~~~~~~~~lF~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~H~lRHt  242 (284)
T cd00798         164 -RGKGNKERIVPLGETAVEALQRYLEVRRPLLLKVGDSDALFLNQRGKRLSRRGVWKILKEYARRAGIEKKISPHTLRHS  242 (284)
T ss_pred             -ECCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
T ss_conf             -6479944788649999999999999833420367877633223689826579999999999999099999991465999


Q ss_pred             HHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf             99999984899889999964999899999999998
Q gi|254780134|r  293 SATISADAGATAHELMATYGWKTVDQAETYTKGAD  327 (348)
Q Consensus       293 ~at~l~~~G~~~~~i~~~lGHss~~~t~~Y~~~~~  327 (348)
T Consensus       243 ~at~l~~~g~~~~~i~~~lGH~s~~tT~~Y~h~~~  277 (284)
T cd00798         243 FATHLLENGADLRAVQELLGHASLATTQIYTHVSF  277 (284)
T ss_pred             HHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHCCCH
T ss_conf             99999987899999998807987999998777799