>cd00801 INT_P4 Bacteriophage P4 integrase. P4-like integrases are found in temperate bacteriophages, integrative plasmids, pathogenicity and symbiosis islands, and other mobile genetic elements. They share the same fold in their catalytic domain and the overall reaction mechanism with the superfamily of DNA breaking-rejoining enzymes. The P4 integrase mediates integrative and excisive site-specific recombination between two sites, called attachment sites, located on the phage genome and the bacterial chromosome. The phage attachment site is often found adjacent to the integrase gene, while the host attachment sites are typically situated near tRNA genes.

Probab=100.00 E-value=0 Score=321.71 Aligned_cols=316 Identities=16% Similarity=0.213 Sum_probs=232.3 Q ss_pred ECCCCCEEEEEEE-CCCC--EEECCCCCCHHHHHHHHHHHH------CCCCCHH----HHHCCCCCCCCHHHHHHHHHHH Q ss_conf 2289938999970-8956--575588999889999999985------3431012----3102323448789999999983 Q gi|254780134|r 15 RTRHGKIIYYFRK-GHGR--RIRLPYPHESTFIPAYMSALT------GSTPKRE----YINSPRKKPTTLKWLISEYRKS 81 (348) Q Consensus 15 ~~r~G~~~~~~r~-~~~~--~~~~~~~~~~~~~~~~~~a~~------~~~~~~~----~~~~~~~~~~Tl~~l~~~y~~~ 81 (348) T Consensus 4 V~~~G~ktf~~r~r~~gk~~~~~iG~~~~~sl~~AR~~A~~~~~~~~~G~dP~~~k~~~~~~~~~~~~T~~~~~e~~~~~ 83 (357) T cd00801 4 VSPSGSKSWRFRYRLAGKRKRLTLGSYPAVSLAEAREKADEARALLAQGIDPREERKEEKAAKLSAANTFAEVAEEWLAA 83 (357) T ss_pred EECCCCEEEEEEEEECCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHH T ss_conf 94798889999999999999985319899889999999999999998699979999999999876455499999999997 Q ss_pred HHHCCCCHHHHHHHHHHHH-HHHHHHCCCCHHHCCHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 5543569788999999999-9999956999589699999998875159--978999999999999964455200105665 Q gi|254780134|r 82 AHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH--TPSSAIQFLTSMRVLFKWAVRQEYVAINPC 158 (348) Q Consensus 82 ~~~~~l~~~T~~~~~~~~~-~~~~~~g~~~l~~it~~~i~~~~~~~~~--~~~t~n~~~~~l~~~~~~a~~~~~i~~NP~ 158 (348) T Consensus 84 ~~-~~~~~~t~~~~~~~l~~~i~p~~g~~~l~~It~~~i~~~~~~l~~~~~~~ta~~~~~~l~~~~~~A~~~~~i~~NP~ 162 (357) T cd00801 84 KK-PRWSEKHARQWRRTLEKHVLPVLGKKPITEITARDLLDVLRRIEARGALETARRVRQRLKQVFRYAIARGLIEANPA 162 (357) T ss_pred HC-CCCCHHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHH T ss_conf 31-02476899999999997758987787489918899999999998569899999999999999999998277443657 Q ss_pred HCCCCCCCC--CCCCCCCCHHHHHHHHHHHCC---CCHHHHHHHHHHHCCCCCCCCCCCCCCEEE--EECCCCC--CCCC Q ss_conf 103464324--444211652344566664037---808999989898618873100256640144--3023321--1331 Q gi|254780134|r 159 LSVERPKRK--TEGIRPWTKEDMQQFKSFWSE---GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIK--TQKT 229 (348) Q Consensus 159 ~~v~~~~~~--~~~~~~~t~~ei~~~~~~~~~---~~~~~~~~~l~~~TG~R~~Ei~~L~~~did--~~~i~~~--~~Kt 229 (348) T Consensus 163 ~~i~~~~~~~~~~r~r~lt~ee~~~l~~~l~~~~~~~~~~~~~~l~l~TG~R~gE~~~L~w~diD~~~~~~~Ip~~~tK~ 242 (357) T cd00801 163 ADLRGADGAPKKQHDRALSPDELPEFLQALDAASGSPVTRLALKLLLLTGVRPGELRGARWSEIDLENALWTIPAERMKT 242 (357) T ss_pred HHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHCCCHHHEECCCCEEEEECCCCCC T ss_conf 65444106788776667899999999999985778837999999999977788888638799877778848962023658 Q ss_pred HHHHHHCCHHHHHHHHHHHCC---CCCCCCCCCC--CCCCCHHHHHHHHHHHHHHCCC-CCCCCHHHHHHHHHHHHCCCC Q ss_conf 024331121689999964201---3322112224--5775877899999999998388-998140269999999984899 Q gi|254780134|r 230 GTIITVELPDGFMKLLAMTPI---GKETFFINND--KQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGAT 303 (348) Q Consensus 230 ~~~~~vpl~~~l~~~l~~~~~---~~~~~~~~~~--g~~~~~~~~~~~~~~~~~~agi-~~~~H~lRht~at~l~~~G~~ 303 (348) T Consensus 243 ~~~~~vPL~~~~~~~L~~~~~~~~~~~~vF~~~~~~~~~~~~~~~~~~~~~~~---~~~~~t~HdlRhT~aT~l~~~Gv~ 319 (357) T cd00801 243 RRPHRVPLSDQALALLEELRELSGHSEYVFPSRRDRGKPLSENTLNKALKRMG---YLGEWTPHGLRRTARTWLNELGFP 319 (357) T ss_pred CCCEEEECCHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCHHHHHHHHHHHC---CCCCCEEECCHHHHHHHHHHCCCC T ss_conf 99369839899999999998864999458257999999774899999999965---999950324889999999985989 Q ss_pred HHHHHHHHCCCCHHHH-HHHHHHH--HHHHHHHH Q ss_conf 8899999649998999-9999999--89999999 Q gi|254780134|r 304 AHELMATYGWKTVDQA-ETYTKGA--DRIRLGIK 334 (348) Q Consensus 304 ~~~i~~~lGHss~~~t-~~Y~~~~--~~~r~a~~ 334 (348) T Consensus 320 ~~~i~~~LGH~~~~~t~~~Y~h~~y~~ekr~~l~ 353 (357) T cd00801 320 PDVIERQLAHVLGGKVRAAYNRADYLEERREAMQ 353 (357) T ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH T ss_conf 9999998489999818999617448999999999

HHsearch alignment for GI: 254780134 and conserved domain: cd00801