HHsearch alignment for GI: 254780134 and conserved domain: cd01186
>cd01186 INT_SG3_C INT_SG3, DNA breaking-rejoining enzymes, integrase/recombinases subgroup 3, catalytic domain. The CD contains various predicted bacterial and phage integrase/recombinase sequences for which not much experimental characterization is available.
Probab=99.96 E-value=3.3e-28 Score=201.93 Aligned_cols=153 Identities=20% Similarity=0.207 Sum_probs=131.2
Q ss_pred CHHHHHHHHHHHCC-CCHHHHHHHHHHHCCCCCCCCCCCCCCEEEE-ECCCCCCCCCHHHHHHCCHHHHHHHHHHHC---
Q ss_conf 52344566664037-8089999898986188731002566401443-023321133102433112168999996420---
Q gi|254780134|r 175 TKEDMQQFKSFWSE-GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN-NIFSIKTQKTGTIITVELPDGFMKLLAMTP--- 249 (348)
Q Consensus 175 t~~ei~~~~~~~~~-~~~~~~~~~l~~~TG~R~~Ei~~L~~~did~-~~i~~~~~Kt~~~~~vpl~~~l~~~l~~~~--- 249 (348)
T Consensus 8 ~~eei~~i~~~l~~~~~Rd~~l~~l~~~TGlR~sEl~~Lk~~Di~~~~~i~i~~~K~~k~r~v~l~~~~~~~l~~y~~~~ 87 (180)
T cd01186 8 DKEQIKAIKDYLKNHSERNYLLFLIGINTGLRISDILALKVKDVRGDERISIKEKKTGKRKRIYLNPILKEELLYYIKDL 87 (180)
T ss_pred CHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHCCCHHHCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHC
T ss_conf 99999999999875698899999999983923999963764872799829999787884465118899999999998843
Q ss_pred CCCCCCCCCCCC--CCCCHHHHHHHHHHHHHHCCCC-CCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 133221122245--7758778999999999983889-9814026999999998489988999996499989999999999
Q gi|254780134|r 250 IGKETFFINNDK--QKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 (348)
Q Consensus 250 ~~~~~~~~~~~g--~~~~~~~~~~~~~~~~~~agi~-~~~H~lRht~at~l~~~G~~~~~i~~~lGHss~~~t~~Y~~~~ 326 (348)
T Consensus 88 ~~~~~lF~s~~~~~~~is~~~~~~~~~~~~~~~gi~~~~~H~lRHT~at~l~~~G~~l~~iq~~LGH~si~tT~~Y~~~~ 167 (180)
T cd01186 88 EENEYLFQSRKGGNRPITRQQAYRILKKAAEQVGIDNIGTHTLRKTFGYHYYKQTKDIALLMEIFNHSSPAITLRYIGIN 167 (180)
T ss_pred CCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHCCC
T ss_conf 87751432388899897899999999999998089876676017899999999699999999993899989999985899
Q ss_pred H
Q ss_conf 8
Q gi|254780134|r 327 D 327 (348)
Q Consensus 327 ~ 327 (348)
T Consensus 168 ~ 168 (180)
T cd01186 168 Q 168 (180)
T ss_pred H
T ss_conf 9