HHsearch alignment for GI: 254780134 and conserved domain: cd01187
>cd01187 INT_SG4 INT_SG4, DNA breaking-rejoining enzymes, integrase/recombinases subgroup 4, N- and C-terminal domains. The CD contains mainly predicted bacterial integrase/recombinases for which not much biochemical characterization is available.
Probab=100.00 E-value=3.9e-38 Score=266.46 Aligned_cols=254 Identities=16% Similarity=0.155 Sum_probs=198.1
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 89999999983554356978899999999999999569995896999999988751-59978999999999999964455
Q gi|254780134|r 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR-KHTPSSAIQFLTSMRVLFKWAVR 149 (348)
Q Consensus 71 l~~l~~~y~~~~~~~~l~~~T~~~~~~~~~~~~~~~g~~~l~~it~~~i~~~~~~~-~~~~~t~n~~~~~l~~~~~~a~~ 149 (348)
T Consensus 1 l~~~i~~yl~~~r~~G~~~~t~~---~~L~~F~~fl~~~~~~~~~~~~~~~w~~~~~~~s~~t~~~rls~lr~F~~~l~~ 77 (299)
T cd01187 1 LRQALEEYIALRRALGYKYRTPA---RLLRDFVRFLERHGAGFITTDLALRWAASPPSAQPATWAGRLGVVRRFARHRRR 77 (299)
T ss_pred CHHHHHHHHHHHHHCCCCHHHHH---HHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 96999999999998799815689---999999999986799888999999999877999889999999999999999998
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCC---C-----CHHHHHHHHHHHCCCCCCCCCCCCCCEEE--E
Q ss_conf 200105665103464324444211652344566664037---8-----08999989898618873100256640144--3
Q gi|254780134|r 150 QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE---G-----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--N 219 (348)
Q Consensus 150 ~~~i~~NP~~~v~~~~~~~~~~~~~t~~ei~~~~~~~~~---~-----~~~~~~~~l~~~TG~R~~Ei~~L~~~did--~ 219 (348)
T Consensus 78 ~g~~~~~P~~~~~~~k~~~~~P~~lt~~Ei~~Ll~a~~~~~~~~~~~~~~~~~l~~Lly~tGlR~sEl~~L~~~Dvd~~~ 157 (299)
T cd01187 78 ADPRTEVPPADLFPRRPRRPTPYIYTDEEIQRLLAAALQLPPTSGLRPWTYRTLFGLLAVTGLRLGEALRLRLSDVDLDS 157 (299)
T ss_pred CCCCCCCCHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCCCC
T ss_conf 69956690765457899999999999999999984110169961057689999999999958889998033433056767
Q ss_pred ECCCCCCCCCHHHHHHCCHHHHHHHHHHH--------C-CCCCCCCCCCCCCCCCHHHHHH---HHHHHHHHCCC----C
Q ss_conf 02332113310243311216899999642--------0-1332211222457758778999---99999998388----9
Q gi|254780134|r 220 NIFSIKTQKTGTIITVELPDGFMKLLAMT--------P-IGKETFFINNDKQKMNATQFSI---WFKAKATKAGV----N 283 (348)
Q Consensus 220 ~~i~~~~~Kt~~~~~vpl~~~l~~~l~~~--------~-~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~~agi----~ 283 (348)
T Consensus 158 ~~i~v~~gKg~K~R~Vpl~~~~~~~L~~yl~~r~~~~~~~~~~~lF~~~~g~~l~~~~~~~~~~~~r~~~~~~~~~~~~~ 237 (299)
T cd01187 158 GILTVRDSKFGKSRLVPLHASTRAALRDYLARRDRLLPAPDSSAFFVSSRGGRLSYGGHRVFYALSREIGLRGWAQRGRG 237 (299)
T ss_pred CEEEEECCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 84765418899707985669999999999998476426898986745899897877789999999999998606666899
Q ss_pred CCCCHHHHHHHHHHH----HCCCCHH----HHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 981402699999999----8489988----9999964999899999999998
Q gi|254780134|r 284 KSAHGVRKFSATISA----DAGATAH----ELMATYGWKTVDQAETYTKGAD 327 (348)
Q Consensus 284 ~~~H~lRht~at~l~----~~G~~~~----~i~~~lGHss~~~t~~Y~~~~~ 327 (348)
T Consensus 238 ~~pH~LRHtfAt~~l~~~~~~G~di~~~L~~lq~~LGH~si~tT~~Y~h~~~ 289 (299)
T cd01187 238 PRLHDLRHRFAVTRLTRWYRAGADVERKLPVLATYLGHANITDTYWYLHASP 289 (299)
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHCCH
T ss_conf 9976571389999999998679973433999999748998688898880399