HHsearch alignment for GI: 254780134 and conserved domain: cd01190
>cd01190 INT_SG5 INT_SG5, DNA breaking-rejoining enzymes, integrase/recombinases subgroup 5, N- and C-terminal domains. The CD contains mainly predicted bacterial integrase/recombinases.
Probab=100.00 E-value=2.2e-36 Score=255.09 Aligned_cols=220 Identities=19% Similarity=0.192 Sum_probs=179.2
Q ss_pred CCCHHHCCHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 9995896999999988751----5997899999999999996445520010---56651034643244442116523445
Q gi|254780134|r 108 DFDYRKITTKHIRSGVESR----KHTPSSAIQFLTSMRVLFKWAVRQEYVA---INPCLSVERPKRKTEGIRPWTKEDMQ 180 (348)
Q Consensus 108 ~~~l~~it~~~i~~~~~~~----~~~~~t~n~~~~~l~~~~~~a~~~~~i~---~NP~~~v~~~~~~~~~~~~~t~~ei~ 180 (348)
T Consensus 2 ~l~l~dI~~~~i~~y~~~L~~~rg~s~~Tin~~l~~L~~f~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~l~~eei~ 81 (260)
T cd01190 2 RLEIEDIDAPLILAFLDHLENDRGNSIRTRNARLAALHSFFRYAAREVPEHLPTIQRVLAIPMKRFKRPLVTYLTREEVQ 81 (260)
T ss_pred CCCHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
T ss_conf 88758799999999999999846999999999999999999999980840145537101488788899999889999999
Q ss_pred HHHHHHCC----CCHHHHHHHHHHHCCCCCCCCCCCCCCEEE--EECCCCCCCCCHHHHHHCCHHHHHHHHHHHC-----
Q ss_conf 66664037----808999989898618873100256640144--3023321133102433112168999996420-----
Q gi|254780134|r 181 QFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMTP----- 249 (348)
Q Consensus 181 ~~~~~~~~----~~~~~~~~~l~~~TG~R~~Ei~~L~~~did--~~~i~~~~~Kt~~~~~vpl~~~l~~~l~~~~----- 249 (348)
T Consensus 82 ~ll~~~~~~~~~~~rd~~i~~ll~~tGlR~sEl~~L~~~did~~~~~~~~~~~K~~k~r~vpi~~~~~~~L~~~~~~~~~ 161 (260)
T cd01190 82 ALLAAPDRRTWSGRRDRAMLLFLYNTGARVSEATGLKVDDLQLDPPAQVRLIGKGRKERTVPLWRSTAAALRAWLRERGL 161 (260)
T ss_pred HHHHCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHCCCHHHCCCCCCEEEEEECCCCEEEEEECCHHHHHHHHHHHHHCCC
T ss_conf 99818665673036899999999995755897862869761789980899968998041354689999999999997544
Q ss_pred -CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC--------CCCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHH
Q ss_conf -133221122245775877899999999998388--------99814026999999998489988999996499989999
Q gi|254780134|r 250 -IGKETFFINNDKQKMNATQFSIWFKAKATKAGV--------NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320 (348)
Q Consensus 250 -~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~agi--------~~~~H~lRht~at~l~~~G~~~~~i~~~lGHss~~~t~ 320 (348)
T Consensus 162 ~~~~~~lF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~lRHt~At~ll~~G~~l~~vq~~LGH~~i~tT~ 241 (260)
T cd01190 162 HAEDEPLFVNRRGEPMTRFGVTYLLRKHAAKAAATAPTLATKRISPHVLRHTTAMHLLQSGVDIVVIALWLGHASLETTN 241 (260)
T ss_pred CCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHH
T ss_conf 68766151278999478688999999999997241643246776767138999999998799999999986899889999
Q ss_pred HHHHHHH
Q ss_conf 9999998
Q gi|254780134|r 321 TYTKGAD 327 (348)
Q Consensus 321 ~Y~~~~~ 327 (348)
T Consensus 242 ~Y~hv~~ 248 (260)
T cd01190 242 IYAEADL 248 (260)
T ss_pred HHHCCCH
T ss_conf 9984799