>cd01191 INT_phiCTX_C phiCTX phage and phage-related integrases, site-specific recombinases, DNA breaking-rejoining enzymes, C-terminal catalytic domain. This CD includes various phage and bacterial integrases, including those similar to phage integrases: Bordetella and Pseudomonas phiCTX; E. coli Rac, Qin, and Shiga toxin 2 933W; and Salmonella typhimurium LT2 Gifsy-2 and Fels-1; and a putative pore-forming cytotoxin integrase from Vibrio parahaemolyticus O3:K6.

Probab=99.95 E-value=5.7e-27 Score=193.88 Aligned_cols=153 Identities=17% Similarity=0.238 Sum_probs=117.3 Q ss_pred CCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCEEE--EECCCCCC---------CCCH-HHHHHCCHH Q ss_conf 11652344566664037808999989898618873100256640144--30233211---------3310-243311216 Q gi|254780134|r 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKT---------QKTG-TIITVELPD 239 (348) Q Consensus 172 ~~~t~~ei~~~~~~~~~~~~~~~~~~l~~~TG~R~~Ei~~L~~~did--~~~i~~~~---------~Kt~-~~~~vpl~~ 239 (348) T Consensus 2 ~plT~eE~~~ll~a~~~~~~~~~~~~l~~~TGlR~gE~~~L~w~dId~~~~~i~v~~~~~~~~~~~~Kt~~~~R~v~l~~ 81 (196) T cd01191 2 DPFTRDEFAALIEAARVCQQEQNLWEFAVFTGLRPSELIALAWEDVDLERGTVYVRRALVRGIFKVPKTKAGTRDVDLNP 81 (196) T ss_pred CCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHCCHHHCCCCCCEEEEEEEEEECCCCCCCCCCCCCEECCCH T ss_conf 89899999999980660641899999999979169999707799847568989999616845656887788531221899 Q ss_pred HHHHHHHHHCC-----------------------CCCCCCCC-CCCCCCC--HHHHHHHHHHHHHHCCCCC-CCCHHHHH Q ss_conf 89999964201-----------------------33221122-2457758--7789999999999838899-81402699 Q gi|254780134|r 240 GFMKLLAMTPI-----------------------GKETFFIN-NDKQKMN--ATQFSIWFKAKATKAGVNK-SAHGVRKF 292 (348) Q Consensus 240 ~l~~~l~~~~~-----------------------~~~~~~~~-~~g~~~~--~~~~~~~~~~~~~~agi~~-~~H~lRht 292 (348) T Consensus 82 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vf~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~H~lRHT 161 (196) T cd01191 82 PALAALKEQAKLTRLSRPHQITVLEREYGRTEKQKGTFVFHDPKTGEPWTYAVASRKSFWDPALKRAGIRYRNPYQMRHT 161 (196) T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHH T ss_conf 99999999999850101024566653114445667745843787788865068999999999999829996777788479 Q ss_pred HHHHHHHCCCCHHHHHHHHCCCCHHHH-HHHHH Q ss_conf 999999848998899999649998999-99999 Q gi|254780134|r 293 SATISADAGATAHELMATYGWKTVDQA-ETYTK 324 (348) Q Consensus 293 ~at~l~~~G~~~~~i~~~lGHss~~~t-~~Y~~ 324 (348) T Consensus 162 ~aT~ll~~G~~~~~v~~~lGHss~~~T~~~Ya~ 194 (196) T cd01191 162 FASWMLTAGANPAFIADQMGHKSAEMVFKHYGK 194 (196) T ss_pred HHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHH T ss_conf 999999879899999999689979999999883

HHsearch alignment for GI: 254780134 and conserved domain: cd01191