HHsearch alignment for GI: 254780134 and conserved domain: cd01197
>cd01197 INT_FimBE_C FimB and FimE and related proteins, DNA breaking-rejoining enzymes, integrase/recombinases, catalytic domain. This CD includes those proteins similar to E.coli FimE and FimB regulatory proteins and Proteus mirabilis MrpI.
Probab=99.97 E-value=6.7e-30 Score=212.90 Aligned_cols=161 Identities=17% Similarity=0.246 Sum_probs=135.3
Q ss_pred CCCCCHHHHHHHHHHHCCC---CHHHHHHHHHHHCCCCCCCCCCCCCCEEE--EECCCCCCCCCHHHHHHCCHHHHHHHH
Q ss_conf 2116523445666640378---08999989898618873100256640144--302332113310243311216899999
Q gi|254780134|r 171 IRPWTKEDMQQFKSFWSEG---SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLL 245 (348)
Q Consensus 171 ~~~~t~~ei~~~~~~~~~~---~~~~~~~~l~~~TG~R~~Ei~~L~~~did--~~~i~~~~~Kt~~~~~vpl~~~l~~~l 245 (348)
T Consensus 2 r~~Lt~eEi~~ll~~~~~~~~~~Rd~~i~~ll~~tGlR~~El~~L~~~did~~~~~i~i~~~K~~~~~~~pl~~~~~~~l 81 (180)
T cd01197 2 RKYLTPSEVRSLLKAALDGRYSARDYCLMLLMFRHGLRVSEACGLKLSDIDLESRQIYIRRLKGGFSTTHPLRDDELEAL 81 (180)
T ss_pred CCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHCCHHHCCCCCCEEEEEEECCCCEEEECCCHHHHHHH
T ss_conf 98999999999996515076438999999999995952999951817656178884899970477303633828999999
Q ss_pred HH----HC----CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC--CCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCC
Q ss_conf 64----20----1332211222457758778999999999983889--98140269999999984899889999964999
Q gi|254780134|r 246 AM----TP----IGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKT 315 (348)
Q Consensus 246 ~~----~~----~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~agi~--~~~H~lRht~at~l~~~G~~~~~i~~~lGHss 315 (348)
T Consensus 82 ~~~~~~~~~~~~~~~~~lF~s~~g~~l~~~~i~~~~~~~~~~agl~~~~~~H~lRHt~At~l~~~G~~i~~Iq~~LGH~~ 161 (180)
T cd01197 82 KNWLEIRAWKGLPDSDWIFLSRRGGPLSRQQVYKLIRRLGAQAGLSIKVHPHMLRHACGYALANQGADTRLIQDYLGHRN 161 (180)
T ss_pred HHHHHHHHHCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCC
T ss_conf 99999866204775411222688884218889999999999828876678987789999999987999999999838998
Q ss_pred HHHHHHHHHHHHHHHHH
Q ss_conf 89999999999899999
Q gi|254780134|r 316 VDQAETYTKGADRIRLG 332 (348)
Q Consensus 316 ~~~t~~Y~~~~~~~r~a 332 (348)
T Consensus 162 i~tT~~Yth~-~~~~l~ 177 (180)
T cd01197 162 IRHTVIYTAS-NAARFL 177 (180)
T ss_pred HHHHHHHHHC-CHHHHH
T ss_conf 7999999967-999998