HHsearch alignment for GI: 254780134 and conserved domain: pfam00589
>pfam00589 Phage_integrase Phage integrase family. Members of this family cleave DNA substrates by a series of staggered cuts, during which the protein becomes covalently linked to the DNA through a catalytic tyrosine residue at the carboxy end of the alignment. The catalytic site residues in CRE recombinase are Arg-173, His-289, Arg-292 and Tyr-324.
Probab=99.95 E-value=3.7e-27 Score=195.10 Aligned_cols=154 Identities=22% Similarity=0.304 Sum_probs=135.0
Q ss_pred CCCHHHHHHHHHHHCC--CCHHHHHHHHHHHCCCCCCCCCCCCCCEEE--EECCCCCCCCCHHHHHHCCHHHHHHHHHHH
Q ss_conf 1652344566664037--808999989898618873100256640144--302332113310243311216899999642
Q gi|254780134|r 173 PWTKEDMQQFKSFWSE--GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMT 248 (348)
Q Consensus 173 ~~t~~ei~~~~~~~~~--~~~~~~~~~l~~~TG~R~~Ei~~L~~~did--~~~i~~~~~Kt~~~~~vpl~~~l~~~l~~~ 248 (348)
T Consensus 2 ~lt~~e~~~ll~~~~~~~~lR~~~l~~l~~~tG~R~~El~~L~~~di~~~~~~i~i~~~K~~~~r~i~i~~~~~~~l~~~ 81 (170)
T pfam00589 2 RLTEDEVERLLAALEEPLNIRDRALVELLLLTGLRISELLSLRWSDIDLDNGTIRIPQTKTRKSRTVPLSDAALEALKEW 81 (170)
T ss_pred CCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCEEEEECCCCCCCCEECCCCHHHHHHHHHH
T ss_conf 89999999999864634597799999999996869888974213004676517873044113310014677799999999
Q ss_pred ------CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC--CCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHH
Q ss_conf ------01332211222457758778999999999983889--9814026999999998489988999996499989999
Q gi|254780134|r 249 ------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320 (348)
Q Consensus 249 ------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~agi~--~~~H~lRht~at~l~~~G~~~~~i~~~lGHss~~~t~ 320 (348)
T Consensus 82 ~~~~~~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~Hs~Rht~at~l~~~g~~~~~v~~~lGH~~~~tT~ 161 (170)
T pfam00589 82 LGDRKEAEESEFLFVSRRGKPLSRSTVNRAFRRAGKRAGIEKDLTPHDLRHTFATHLAENGVPLRVIQKLLGHSSISMTM 161 (170)
T ss_pred HHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHH
T ss_conf 99731467776143201688553134678888888860778767878884899999999699999999996899989999
Q ss_pred HHHHHH
Q ss_conf 999999
Q gi|254780134|r 321 TYTKGA 326 (348)
Q Consensus 321 ~Y~~~~ 326 (348)
T Consensus 162 ~Y~~~~ 167 (170)
T pfam00589 162 RYTHVA 167 (170)
T ss_pred HHCCCC
T ss_conf 820838