HHsearch alignment for GI: 254780134 and conserved domain: pfam01028
>pfam01028 Topoisom_I Eukaryotic DNA topoisomerase I, catalytic core. Topoisomerase I promotes the relaxation of DNA superhelical tension by introducing a transient single-stranded break in duplex DNA and are vital for the processes of replication, transcription, and recombination.
Probab=95.54 E-value=0.11 Score=29.35 Aligned_cols=129 Identities=15% Similarity=0.237 Sum_probs=76.8
Q ss_pred HHHHHHHHCCCCCCC-----------CCCCCCCEE--EEECCCCC-CCCCHHHHHHCCH-HHHHHHHHHHC--CCCCCCC
Q ss_conf 998989861887310-----------025664014--43023321-1331024331121-68999996420--1332211
Q gi|254780134|r 194 LAFEFLLYSGLRCSD-----------SCRAGVQHL--QNNIFSIK-TQKTGTIITVELP-DGFMKLLAMTP--IGKETFF 256 (348)
Q Consensus 194 ~~~~l~~~TG~R~~E-----------i~~L~~~di--d~~~i~~~-~~Kt~~~~~vpl~-~~l~~~l~~~~--~~~~~~~ 256 (348)
T Consensus 58 ~~~~Lld~~~iRvGne~Y~~~n~S~GltTLr~~Hv~i~~~~i~~~F~GK~gv~~~~~v~d~~l~~~l~~l~~~~pg~~LF 137 (244)
T pfam01028 58 VAVYLLDKTALRVGNEKYARENATVGLTTLRNRHVTLEGDVIRFDFLGKDGIRHENTVRDKRLAKNLKRLKQKLPGDELF 137 (244)
T ss_pred HHHHHHHHHCCCCCCHHHHHHCCCCCEEECCCCCEEEECCEEEEEEECCCCCEEEEEECCHHHHHHHHHHHHCCCCCHHE
T ss_conf 99999998441368743455339865010010447898998999987798747898868889999999998529973216
Q ss_pred C-CCCC--CCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH-----HHHHCCCC--------------HHHHHHHHCCC
Q ss_conf 2-2245--7758778999999999983889981402699999-----99984899--------------88999996499
Q gi|254780134|r 257 I-NNDK--QKMNATQFSIWFKAKATKAGVNKSAHGVRKFSAT-----ISADAGAT--------------AHELMATYGWK 314 (348)
Q Consensus 257 ~-~~~g--~~~~~~~~~~~~~~~~~~agi~~~~H~lRht~at-----~l~~~G~~--------------~~~i~~~lGHs 314 (348)
T Consensus 138 ~y~~~g~~~~v~s~dvN~yLk~~~g---~~~TaKdFRTw~at~~a~~~L~~~~~~~~~~~~~k~~i~~a~~~vA~~LgnT 214 (244)
T pfam01028 138 QYLDDGERDRVSSSDLNAYLRELMG---EGFTAKDFRTWNASVTALEALAELGKSLESVAEKKKAINAANKEVAILLGNT 214 (244)
T ss_pred EEECCCCEEECCHHHHHHHHHHHHC---CCCCHHHHHHHCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 8716996342788999999999835---8875212222120799999999658998899999999999999999985898
Q ss_pred CHHHHHHHHHH
Q ss_conf 98999999999
Q gi|254780134|r 315 TVDQAETYTKG 325 (348)
Q Consensus 315 s~~~t~~Y~~~ 325 (348)
T Consensus 215 paV~R~sYi~p 225 (244)
T pfam01028 215 PAVSRKSYIHP 225 (244)
T ss_pred CCCHHHHCCCH
T ss_conf 41137744587