HHsearch alignment for GI: 254780134 and conserved domain: pfam02899
>pfam02899 Phage_integr_N Phage integrase, N-terminal SAM-like domain.
Probab=98.29 E-value=7.2e-06 Score=56.63 Aligned_cols=67 Identities=15% Similarity=0.277 Sum_probs=58.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHC--CCCHHHCCHHHHHHHHHHH---CCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 35697889999999999999956--9995896999999988751---5997899999999999996445520
Q gi|254780134|r 85 GSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESR---KHTPSSAIQFLTSMRVLFKWAVRQE 151 (348)
Q Consensus 85 ~~l~~~T~~~~~~~~~~~~~~~g--~~~l~~it~~~i~~~~~~~---~~~~~t~n~~~~~l~~~~~~a~~~~ 151 (348)
T Consensus 12 r~~S~~Ti~aY~~dL~~f~~~l~~~~~~~~~i~~~~i~~yl~~l~~~~~s~~Ti~r~lsalr~F~~~l~~eG 83 (83)
T pfam02899 12 RGLSPNTVRAYRRDLKAFLKFLAEGGLSLDQLTTDDVRAFLAELLREGLSAASLARRLSALRSFFQFLKREG 83 (83)
T ss_pred HCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 584999999999999999999987499988868998999999987089889999999999999999999719