HHsearch alignment for GI: 254780134 and conserved domain: pfam09003
>pfam09003 Phage_integ_N Bacteriophage lambda integrase, N-terminal domain. The amino terminal domain of bacteriophage lambda integrase folds into a three-stranded, antiparallel beta-sheet that packs against a C-terminal alpha-helix, adopting a fold that is structurally related to the three-stranded beta-sheet family of DNA-binding domains (which includes the GCC-box DNA-binding domain and the N-terminal domain of Tn916 integrase). This domain is responsible for high-affinity binding to each of the five DNA arm-type sites and is also a context-sensitive modulator of DNA cleavage.
Probab=95.88 E-value=0.016 Score=34.82 Aligned_cols=37 Identities=32% Similarity=0.467 Sum_probs=28.5
Q ss_pred CCCCC-----CCCCCCEEEEC-CCCCEEEEEE-ECCCCEEECCC
Q ss_conf 99888-----88798189622-8993899997-08956575588
Q gi|254780134|r 1 MTPSL-----RLPPFVTKERT-RHGKIIYYFR-KGHGRRIRLPY 37 (348)
Q Consensus 1 m~p~~-----~~p~~v~~~~~-r~G~~~~~~r-~~~~~~~~~~~ 37 (348)
T Consensus 1 Ma~Rprk~~~~lP~NLy~r~~~r~~k~Yy~yr~P~tGk~~~LG~ 44 (81)
T pfam09003 1 MARRPRKYDRDLPPNLYCRRDKRNGKVYYQYRNPLTGKFHGLGR 44 (81)
T ss_pred CCCCCCCCCCCCCCCCCEECCCCCCCEEEEEECCCCCCEEECCC
T ss_conf 99887645589797513321576772589974688886531674