HHsearch alignment for GI: 254780134 and conserved domain: pfam11917
>pfam11917 DUF3435 Protein of unknown function (DUF3435). This family of proteins are functionally uncharacterized. This protein is found in eukaryotes. Proteins in this family are typically between 435 to 791 amino acids in length. This family is related to pfam00589 suggesting it may be an integrase enzyme.
Probab=98.28 E-value=3.6e-06 Score=58.64 Aligned_cols=63 Identities=17% Similarity=0.196 Sum_probs=53.6
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCC--CCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHH-HH
Q ss_conf 57758778999999999983889--98140269999999984899889999964999899999-99
Q gi|254780134|r 261 KQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET-YT 323 (348)
Q Consensus 261 g~~~~~~~~~~~~~~~~~~agi~--~~~H~lRht~at~l~~~G~~~~~i~~~lGHss~~~t~~-Y~ 323 (348)
T Consensus 170 ~~~lt~st~~~~lk~lgei~Gf~~~~~~y~~R~g~a~~~n~~~vs~a~rn~im~Ha~~~tF~k~Y~ 235 (414)
T pfam11917 170 DQALTASTLNSWLKRLGEIAGFEDPLTPYCLRYGAAKALNSGEVSEAERNLILGHASSRTFLKHYL 235 (414)
T ss_pred CCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCHHHHHCC
T ss_conf 778898999999999988841111454002357899852665699899978744787405776256