HHsearch alignment of GI: 254780134 and MMDB domain: 1aih_A_1-49_87-170

>1aih_A (A:1-49,A:87-170) HP1 integrase; DNA integration, recombination; 2.50A {Bacteriophage HP1}
Probab=99.71  E-value=2.7e-17  Score=130.50  Aligned_cols=105  Identities=16%  Similarity=0.125  Sum_probs=89.5

Q ss_pred             CCCCHHHHHHHHHHHCC--CCHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCHHHHHHCCHHHHHHHHHHHC
Q ss_conf             11652344566664037--8089999898986188731002566401443023321133102433112168999996420
Q gi|254780134|r  172 RPWTKEDMQQFKSFWSE--GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTP  249 (348)
Q Consensus       172 ~~~t~~ei~~~~~~~~~--~~~~~~~~~l~~~TG~R~~Ei~~L~~~did~~~i~~~~~Kt~~~~~vpl~~~l~~~l~~~~  249 (348)
                      .-++.+|+..++++++.  ++....++.||+.||||.||+++|+|.-                                 
T Consensus         5 ~~l~~~e~~~l~~~~~~~~~~~l~~~~~~~~~t~~r~~e~~~l~~~~---------------------------------   51 (133)
T 1aih_A            5 AFLYERDIYRLLAECDNSRNPDLGLIVRICLATGARWSEAETLTQLF---------------------------------   51 (133)
T ss_dssp             CCCCHHHHHHHHHHHTTSSSTTHHHHHHHHHHHCCCHHHHHTCBTSS---------------------------------
T ss_pred             CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHCC---------------------------------
T ss_conf             68999999999998646589669999999999776466788764021---------------------------------


Q ss_pred             CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC----CCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf             1332211222457758778999999999983889----981402699999999848998899999649998999999999
Q gi|254780134|r  250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGVN----KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG  325 (348)
Q Consensus       250 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~agi~----~~~H~lRht~at~l~~~G~~~~~i~~~lGHss~~~t~~Y~~~  325 (348)
                                       +++.+.|+++++++|+.    .++|+|||||||.|.++|+|+..||.+|||+|..||++|++.
T Consensus        52 -----------------~~i~~~~~~~~~~agi~~~~~it~H~lRHT~At~l~~~G~d~~~Iq~~lGH~s~~tT~~Y~~~  114 (133)
T 1aih_A           52 -----------------NDAYESFENAVLRAEIELPKGQLTHVLRHTFASHFMMNGGNILVLKEILGHSTIEMTMRYAHF  114 (133)
T ss_dssp             -----------------CCCHHHHHHHHHHTTCCCCTTCTTTHHHHHHHHHHHHTTCCHHHHHHHHTCSSHHHHGGGGGG
T ss_pred             -----------------CCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHHCC
T ss_conf             -----------------110124433456765125876200246887737877447309899998089988999877667


Q ss_pred             H
Q ss_conf             9
Q gi|254780134|r  326 A  326 (348)
Q Consensus       326 ~  326 (348)
                      .
T Consensus       115 ~  115 (133)
T 1aih_A          115 A  115 (133)
T ss_dssp             S
T ss_pred             C
T ss_conf             9