HHsearch alignment of GI: 254780134 and MMDB domain: 1aih_A_1-49_87-170
>1aih_A (A:1-49,A:87-170) HP1 integrase; DNA integration, recombination; 2.50A {Bacteriophage HP1}
Probab=99.71 E-value=2.7e-17 Score=130.50 Aligned_cols=105 Identities=16% Similarity=0.125 Sum_probs=89.5
Q ss_pred CCCCHHHHHHHHHHHCC--CCHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCHHHHHHCCHHHHHHHHHHHC
Q ss_conf 11652344566664037--8089999898986188731002566401443023321133102433112168999996420
Q gi|254780134|r 172 RPWTKEDMQQFKSFWSE--GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTP 249 (348)
Q Consensus 172 ~~~t~~ei~~~~~~~~~--~~~~~~~~~l~~~TG~R~~Ei~~L~~~did~~~i~~~~~Kt~~~~~vpl~~~l~~~l~~~~ 249 (348)
.-++.+|+..++++++. ++....++.||+.||||.||+++|+|.-
T Consensus 5 ~~l~~~e~~~l~~~~~~~~~~~l~~~~~~~~~t~~r~~e~~~l~~~~--------------------------------- 51 (133)
T 1aih_A 5 AFLYERDIYRLLAECDNSRNPDLGLIVRICLATGARWSEAETLTQLF--------------------------------- 51 (133)
T ss_dssp CCCCHHHHHHHHHHHTTSSSTTHHHHHHHHHHHCCCHHHHHTCBTSS---------------------------------
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHCC---------------------------------
T ss_conf 68999999999998646589669999999999776466788764021---------------------------------
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC----CCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 1332211222457758778999999999983889----981402699999999848998899999649998999999999
Q gi|254780134|r 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGVN----KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 (348)
Q Consensus 250 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~agi~----~~~H~lRht~at~l~~~G~~~~~i~~~lGHss~~~t~~Y~~~ 325 (348)
+++.+.|+++++++|+. .++|+|||||||.|.++|+|+..||.+|||+|..||++|++.
T Consensus 52 -----------------~~i~~~~~~~~~~agi~~~~~it~H~lRHT~At~l~~~G~d~~~Iq~~lGH~s~~tT~~Y~~~ 114 (133)
T 1aih_A 52 -----------------NDAYESFENAVLRAEIELPKGQLTHVLRHTFASHFMMNGGNILVLKEILGHSTIEMTMRYAHF 114 (133)
T ss_dssp -----------------CCCHHHHHHHHHHTTCCCCTTCTTTHHHHHHHHHHHHTTCCHHHHHHHHTCSSHHHHGGGGGG
T ss_pred -----------------CCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHHCC
T ss_conf -----------------110124433456765125876200246887737877447309899998089988999877667
Q ss_pred H
Q ss_conf 9
Q gi|254780134|r 326 A 326 (348)
Q Consensus 326 ~ 326 (348)
.
T Consensus 115 ~ 115 (133)
T 1aih_A 115 A 115 (133)
T ss_dssp S
T ss_pred C
T ss_conf 9