HHsearch alignment of GI: 254780134 and MMDB domain: 1z1b_A_167-356
>1z1b_A (A:167-356) Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 3.80A {Enterobacteria phage lambda}
Probab=99.87 E-value=3.6e-21 Score=155.73 Aligned_cols=163 Identities=13% Similarity=0.131 Sum_probs=121.5
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHCC-CCHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEC--CCCCCCCCHHHHH--HCC
Q ss_conf 64324444211652344566664037-808999989898618873100256640144302--3321133102433--112
Q gi|254780134|r 163 RPKRKTEGIRPWTKEDMQQFKSFWSE-GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTIIT--VEL 237 (348)
Q Consensus 163 ~~~~~~~~~~~~t~~ei~~~~~~~~~-~~~~~~~~~l~~~TG~R~~Ei~~L~~~did~~~--i~~~~~Kt~~~~~--vpl 237 (348)
+++.......+++++|+.+|++++.. +...++++.|+++||||.||+++|+|+|||... +.+...+++.... .+.
T Consensus 3 k~k~~~~~~~~lt~eei~~l~~~~~~~~~~~~~~~~l~~~tGlR~~E~~~l~~~di~~~~~~~~~~~~~~~~~~~~~~~~ 82 (190)
T 1z1b_A 3 RAAKSKVRRSRLTADEYLKIYQAAESSPCWLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAIPTALHI 82 (190)
T ss_dssp CCCCCCCCBCCCCHHHHHHHHHHTTSSCHHHHHHHHHHHHHCCCHHHHTTCBGGGEETTEEEEECTTTCCEEEEETTCEE
T ss_pred CCCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCH
T ss_conf 22233443322203667664201224550245788999874124466433332212232222223444330212554210
Q ss_pred H----HHHHHHH-HHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC----CCCCHHHHHHHHHHHHCCCCHHHHH
Q ss_conf 1----6899999-64201332211222457758778999999999983889----9814026999999998489988999
Q gi|254780134|r 238 P----DGFMKLL-AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN----KSAHGVRKFSATISADAGATAHELM 308 (348)
Q Consensus 238 ~----~~l~~~l-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~agi~----~~~H~lRht~at~l~~~G~~~~~i~ 308 (348)
. ..+.... .........+|.+..+...........+..+...++.. ...|.+||||||.|.++|+++..|+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~t~at~l~~~g~~~~~i~ 162 (190)
T 1z1b_A 83 DALGISMKETLDKCKEILGGETIIASTRREPLSSGTVSRYFMRARKASGLSFEGDPPTFHELRSLSARLYEKQISDKFAQ 162 (190)
T ss_dssp TTTTEEHHHHHHHHHHHTCSSBSSCCTTSCCCCHHHHHHHHHHHHHHHTCCCSSBCCCTTHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHH
T ss_conf 25677654433310345777314115567757888999999999998599978899974828999999998699999999
Q ss_pred HHHCCCCHHHHHHHHHH
Q ss_conf 99649998999999999
Q gi|254780134|r 309 ATYGWKTVDQAETYTKG 325 (348)
Q Consensus 309 ~~lGHss~~~t~~Y~~~ 325 (348)
++|||+|..||++|...
T Consensus 163 ~~lGH~~~~~T~~yy~~ 179 (190)
T 1z1b_A 163 HLLGHKSDTMASQXRDD 179 (190)
T ss_dssp HHHTCSSHHHHHHHTCC
T ss_pred HHHCCCCHHHHHHHHCC
T ss_conf 98389988999988327