HHsearch alignment of GI: 254780134 and MMDB domain: 2a3v_A_95-144_243-320
>2a3v_A (A:95-144,A:243-320) Site-specific recombinase INTI4; protein-DNA complex, recombination; HET: DNA; 2.80A {Vibrio cholerae o1 biovar eltor str}
Probab=99.81 E-value=2.1e-20 Score=150.80 Aligned_cols=113 Identities=23% Similarity=0.310 Sum_probs=99.7
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCHHHHHHCCHHHHH
Q ss_conf 64324444211652344566664037808999989898618873100256640144302332113310243311216899
Q gi|254780134|r 163 RPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242 (348)
Q Consensus 163 ~~~~~~~~~~~~t~~ei~~~~~~~~~~~~~~~~~~l~~~TG~R~~Ei~~L~~~did~~~i~~~~~Kt~~~~~vpl~~~l~ 242 (348)
+|+.+.....+++.+|+.++++.++ .+.++++.|++.||||+||+++|+|
T Consensus 1 rpk~~~~lp~~l~~~e~~~ll~~~~--~r~~~~~~ll~~~GlR~~E~~~l~~---------------------------- 50 (128)
T 2a3v_A 1 RSQLERKLPVVLTRDEIRRLLEIVD--PKHQLPIKLLYGSGLRLMECMRLRV---------------------------- 50 (128)
T ss_dssp CCCCCCCCCCCCCHHHHHHHTTSSC--HHHHHHHHHHHHSCCCHHHHHTCBG----------------------------
T ss_pred HHHHHCCCCCCCHHHHHHHCCCCCC--HHHHHHHHHHHHHCCCCCCCCCCHH----------------------------
T ss_conf 1000001222310355420000000--2588899998750012233333111----------------------------
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC--CCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHH
Q ss_conf 99964201332211222457758778999999999983889--9814026999999998489988999996499989999
Q gi|254780134|r 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320 (348)
Q Consensus 243 ~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~agi~--~~~H~lRht~at~l~~~G~~~~~i~~~lGHss~~~t~ 320 (348)
+.++++..|+++++++|++ .++|+|||||||.++++|+++..||.+|||+|..||+
T Consensus 51 ----------------------s~~~i~~~~k~~~~~agi~~~~~~H~lRHT~aT~l~~~G~~~~~i~~~lGHss~~~t~ 108 (128)
T 2a3v_A 51 ----------------------NETVLQKAVRRSAQEAGIEKTVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTQ 108 (128)
T ss_dssp ----------------------CHHHHHHHHHHHHHTTCCCSCCCHHHHHHHHHHHHHHTTCCHHHHHHHHTCSSHHHHG
T ss_pred ----------------------CHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHH
T ss_conf ----------------------6899999999999985999999871149999999998789999999884899989999
Q ss_pred HHHHHHH
Q ss_conf 9999998
Q gi|254780134|r 321 TYTKGAD 327 (348)
Q Consensus 321 ~Y~~~~~ 327 (348)
+|++..+
T Consensus 109 ~Y~h~~~ 115 (128)
T 2a3v_A 109 IYTHVLD 115 (128)
T ss_dssp GGCC---
T ss_pred HHHCCCH
T ss_conf 9884699