HHsearch alignment of GI: 254780134 and MMDB domain: 2kd1_A_
>2kd1_A (A:) DNA integration/recombination/invertion protein; protein structure initiative, structural genomics, unknown function, PSI-2; HET: DNA; NMR {Bacillus cereus atcc 14579}
Probab=99.54 E-value=5e-14 Score=109.26 Aligned_cols=111 Identities=15% Similarity=0.253 Sum_probs=100.3
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-HHHHHCCCCHHHCCHHHHHHHHHHH---CCCHHHHHHHHHHHH
Q ss_conf 344878999999998355435697889999999999-9999569995896999999988751---599789999999999
Q gi|254780134|r 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFLTSMR 141 (348)
Q Consensus 66 ~~~~Tl~~l~~~y~~~~~~~~l~~~T~~~~~~~~~~-~~~~~g~~~l~~it~~~i~~~~~~~---~~~~~t~n~~~~~l~ 141 (348)
....||.++++.|+...+ .+++++|+..|+..++. +.+.+|+.++.+|++.+|++|++.+ +.+++|++.+++.|+
T Consensus 3 ~~~~t~~~~~~~~l~~~~-~~~s~~T~~~y~~~l~~~~~~~~~~~~i~~i~~~~i~~~~~~l~~~g~s~~t~~~~~~~l~ 81 (118)
T 2kd1_A 3 PSKLSYGEYLESWFNTKR-HSVGIQTAKVLKGYLNSRIIPSLGNIKLAKLTSLHMQNYVNSLRDEGLKRGTIEKIIKVIR 81 (118)
T ss_dssp CSCSBHHHHHHHHHHHHH-HHHCHHHHHHHHHHHTTTHHHHTTSSBGGGCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHHCCEEHHHCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf 760689999999999984-7389999999999999876288578079998999999999998863148999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHH
Q ss_conf 999644552001056651034643244442116523
Q gi|254780134|r 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177 (348)
Q Consensus 142 ~~~~~a~~~~~i~~NP~~~v~~~~~~~~~~~~~t~~ 177 (348)
++|+||++.|++..||+.+++.|+.......++|+|
T Consensus 82 ~~~~~a~~~~~i~~nP~~~i~~~k~~~~~~~~lt~E 117 (118)
T 2kd1_A 82 NSLEHAIDLELITKNVAAKTKLPKADKEELEHHHHH 117 (118)
T ss_dssp HHHHHHHHTTSCSSCTTTTCCCCSCCCCSSSCCCCC
T ss_pred HHHHHHHHCCCCCCCCHHHCCCCCCCCCCCCCCCCC
T ss_conf 999999988895639184192899999751023667