HHsearch alignment of GI: 254780134 and MMDB domain: 2khq_A_
>2khq_A (A:) Integrase; all-alpha, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Staphylococcus saprophyticus subsp}
Probab=99.57 E-value=2.4e-14 Score=111.35 Aligned_cols=103 Identities=15% Similarity=0.149 Sum_probs=95.4
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHH
Q ss_conf 87899999999835543569788999999999999995699958969999999887515--9978999999999999964
Q gi|254780134|r 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK--HTPSSAIQFLTSMRVLFKW 146 (348)
Q Consensus 69 ~Tl~~l~~~y~~~~~~~~l~~~T~~~~~~~~~~~~~~~g~~~l~~it~~~i~~~~~~~~--~~~~t~n~~~~~l~~~~~~ 146 (348)
.||+++++.|+.+....+++++|...|+..++++.+.+|+.++.+|++.+|++|++.+. .++.|++..++.|+++|+|
T Consensus 2 it~~~~~~~~~~~~~~~~~s~~T~~~y~~~~~~~~~~~~~~~i~~i~~~~i~~~~~~l~~~~s~~t~~~~~~~l~~~f~~ 81 (110)
T 2khq_A 2 ITFADYFYQWYEVNKLPHVSESTKRHYESAYKHIKDHFRHKLLKDIKRTEYQKFLNEYGLTHSYETIRKLNSYIRNAFDD 81 (110)
T ss_dssp CBHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHHHHCSSCBGGGCCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred EEHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHCCCHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf 83899999999986427789999999999886017773810685436999999999863015889999999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 4552001056651034643244442
Q gi|254780134|r 147 AVRQEYVAINPCLSVERPKRKTEGI 171 (348)
Q Consensus 147 a~~~~~i~~NP~~~v~~~~~~~~~~ 171 (348)
|++.|+++.||+.+++.++.+.+..
T Consensus 82 a~~~~~i~~nP~~~i~~~~~~~~~~ 106 (110)
T 2khq_A 82 AIHEGYVIKNPTYKAELHASVLEHH 106 (110)
T ss_dssp HHHTTCCCCCGGGGCCCCCGGGCCC
T ss_pred HHHCCCCCCCCCCCCEECCCHHHHC
T ss_conf 9988791019877787464311211