HHsearch alignment of GI: 254780134 and MMDB domain: 2kj5_A_
>2kj5_A (A:) Phage integrase; GFT NMR, PSI-2, NESG, structural genomics, protein structure initiative; NMR {Nitrosospira multiformis atcc 25196}
Probab=99.42 E-value=3.2e-13 Score=104.07 Aligned_cols=104 Identities=17% Similarity=0.229 Sum_probs=92.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-HHHHHCCCCHHHCCHHHHHHHHHHHC--CCHHHHHHHHHHHH
Q ss_conf 2344878999999998355435697889999999999-99995699958969999999887515--99789999999999
Q gi|254780134|r 65 RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESRK--HTPSSAIQFLTSMR 141 (348)
Q Consensus 65 ~~~~~Tl~~l~~~y~~~~~~~~l~~~T~~~~~~~~~~-~~~~~g~~~l~~it~~~i~~~~~~~~--~~~~t~n~~~~~l~ 141 (348)
.....||+++++.|+... ..++++|..+|+..++. +.+.+|+.++.+||+.++++|++.+. .++.+++++++.|+
T Consensus 3 ~~~~~tf~~~~~~~l~~~--~~~~~~t~~~~~~~~~~~i~~~~g~~~i~~it~~~i~~~~~~l~~~~~~~t~~~~~~~l~ 80 (116)
T 2kj5_A 3 EKNAYTVAQLADEYFERM--IAGRWKHPNIVRSRIEKDIKPAIGSLKVEDVKPRHIDDVLKAVMKRGAPSIANDTLRWLK 80 (116)
T ss_dssp SSSCCBHHHHHHHHHHHH--TTTSCSCHHHHHHHHHHTTSCSGGGSBSSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH--HHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHCHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf 766552999999999987--467887199999999989799887986787064778999888764023168889999999
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 99964455200105665103464324444
Q gi|254780134|r 142 VLFKWAVRQEYVAINPCLSVERPKRKTEG 170 (348)
Q Consensus 142 ~~~~~a~~~~~i~~NP~~~v~~~~~~~~~ 170 (348)
++|+||++.|+++.||+.+|+.++.....
T Consensus 81 ~~f~~Av~~~~i~~NP~~~i~~~~~~~~~ 109 (116)
T 2kj5_A 81 RMFNYAIKRHIIEYNPAAAFDPGDAGGKL 109 (116)
T ss_dssp HHHHHHHHTTSCSSCGGGGSCCCCCCCCC
T ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99999998789567973469723589731