HHsearch alignment of GI: 254780134 and MMDB domain: 2kkp_A_27-117
>2kkp_A (A:27-117) Phage integrase; SAM-like domain, alpha-helical bundle, structural genomics, PSI-2, protein structure initiative; NMR {Moorella thermoacetica atcc 39073}
Probab=99.08 E-value=7e-11 Score=88.81 Aligned_cols=85 Identities=15% Similarity=0.204 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHH-HHHHHCCCCHHHCCHHHHHHHHHHH---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 889999999999-9999569995896999999988751---599789999999999999644552001056651034643
Q gi|254780134|r 90 NSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK 165 (348)
Q Consensus 90 ~T~~~~~~~~~~-~~~~~g~~~l~~it~~~i~~~~~~~---~~~~~t~n~~~~~l~~~~~~a~~~~~i~~NP~~~v~~~~ 165 (348)
+|+..|+..++. +.+.+|+.++.+||..++++|++.+ +.++.|++++++.|+++|+||++.++++.||+..|+.|+
T Consensus 2 ~T~~~y~~~~~~~~~~~~g~~~i~~it~~~i~~~~~~l~~~g~s~~t~~~~~~~l~~~f~~a~~~~~i~~nP~~~i~~pk 81 (91)
T 2kkp_A 2 STWESYETVLRLHVIPTLGSIPLKKLQPADIQRLYASKLESGLSPTRVRYIHVVLHEAMSQARESGLLLQNPTEAAKPPR 81 (91)
T ss_dssp CCCSHHHHHHHHHHCCCCCTSCTTTCCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTTTSCSSCGGGGSCCCC
T ss_pred CCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCC
T ss_conf 50989999999989999588737667079999999999975877688999999999999999988994419184297899
Q ss_pred CCCCCCCCC
Q ss_conf 244442116
Q gi|254780134|r 166 RKTEGIRPW 174 (348)
Q Consensus 166 ~~~~~~~~~ 174 (348)
......+++
T Consensus 82 ~~~~~~~~l 90 (91)
T 2kkp_A 82 HPLEHHHHH 90 (91)
T ss_dssp CCCCCCCCC
T ss_pred CCCCCCCCC
T ss_conf 986556678