HHsearch alignment of GI: 254780134 and MMDB domain: 2kkp_A_27-117

>2kkp_A (A:27-117) Phage integrase; SAM-like domain, alpha-helical bundle, structural genomics, PSI-2, protein structure initiative; NMR {Moorella thermoacetica atcc 39073}
Probab=99.08  E-value=7e-11  Score=88.81  Aligned_cols=85  Identities=15%  Similarity=0.204  Sum_probs=74.4

Q ss_pred             HHHHHHHHHHHH-HHHHHCCCCHHHCCHHHHHHHHHHH---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             889999999999-9999569995896999999988751---599789999999999999644552001056651034643
Q gi|254780134|r   90 NSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK  165 (348)
Q Consensus        90 ~T~~~~~~~~~~-~~~~~g~~~l~~it~~~i~~~~~~~---~~~~~t~n~~~~~l~~~~~~a~~~~~i~~NP~~~v~~~~  165 (348)
                      +|+..|+..++. +.+.+|+.++.+||..++++|++.+   +.++.|++++++.|+++|+||++.++++.||+..|+.|+
T Consensus         2 ~T~~~y~~~~~~~~~~~~g~~~i~~it~~~i~~~~~~l~~~g~s~~t~~~~~~~l~~~f~~a~~~~~i~~nP~~~i~~pk   81 (91)
T 2kkp_A            2 STWESYETVLRLHVIPTLGSIPLKKLQPADIQRLYASKLESGLSPTRVRYIHVVLHEAMSQARESGLLLQNPTEAAKPPR   81 (91)
T ss_dssp             CCCSHHHHHHHHHHCCCCCTSCTTTCCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTTTSCSSCGGGGSCCCC
T ss_pred             CCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCC
T ss_conf             50989999999989999588737667079999999999975877688999999999999999988994419184297899


Q ss_pred             CCCCCCCCC
Q ss_conf             244442116
Q gi|254780134|r  166 RKTEGIRPW  174 (348)
Q Consensus       166 ~~~~~~~~~  174 (348)
                      ......+++
T Consensus        82 ~~~~~~~~l   90 (91)
T 2kkp_A           82 HPLEHHHHH   90 (91)
T ss_dssp             CCCCCCCCC
T ss_pred             CCCCCCCCC
T ss_conf             986556678