Query         gi|254780134|ref|YP_003064547.1| phage-related integrase/recombinase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 348
No_of_seqs    161 out of 6694
Neff          9.6 
Searched_HMMs 33803
Date          Mon May 23 10:09:46 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780134.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >1z1b_A Integrase; protein-DNA  99.9 3.6E-21 1.1E-25  155.7  13.9  163  163-325     3-179 (190)
  2 >1a0p_A Site-specific recombin  99.8 2.8E-21 8.4E-26  156.4   8.6  164  164-327     1-182 (190)
  3 >1xo0_A Recombinase CRE; CRE r  99.8 5.6E-22 1.7E-26  161.0   2.8  154  172-325     2-194 (196)
  4 >1z19_A Integrase; protein-DNA  99.8 6.6E-20 1.9E-24  147.5  12.1  165  162-326     2-181 (190)
  5 >2a3v_A Site-specific recombin  99.8 2.1E-20 6.1E-25  150.8   5.3  113  163-327     1-115 (128)
  6 >1ae9_A Lambda integrase; DNA   99.8 3.1E-18   9E-23  136.7  11.4  154  172-325     2-169 (179)
  7 >1aih_A HP1 integrase; DNA int  99.7 2.7E-17 8.1E-22  130.5   7.8  105  172-326     5-115 (133)
  8 >2kiw_A INT protein; alpha, st  99.6 4.2E-15 1.3E-19  116.3  10.9  109   70-179     1-111 (111)
  9 >2kob_A Uncharacterized protei  99.6 3.5E-15   1E-19  116.8  10.2  103   68-170     1-103 (108)
 10 >2oxo_A Integrase; DNA-binding  99.6 1.7E-14 4.9E-19  112.4   9.9  100   69-168     1-102 (103)
 11 >2khq_A Integrase; all-alpha,   99.6 2.4E-14 7.1E-19  111.3  10.7  103   69-171     2-106 (110)
 12 >2kd1_A DNA integration/recomb  99.5   5E-14 1.5E-18  109.3   9.8  111   66-177     3-117 (118)
 13 >2khv_A Phage integrase; solut  99.5 2.8E-14 8.3E-19  110.9   8.2  102   69-170     1-104 (106)
 14 >2key_A Putative phage integra  99.5 6.2E-14 1.8E-18  108.7   8.6  104   65-169     4-111 (112)
 15 >2kkv_A Integrase; protein str  99.5 4.7E-14 1.4E-18  109.5   5.9  113   65-179     3-120 (121)
 16 >2kj9_A Integrase; DNA_BRE_C s  99.5 1.5E-13 4.4E-18  106.2   8.2  106   63-170     5-113 (118)
 17 >2kj8_A Putative prophage CPS-  99.5 2.5E-13 7.5E-18  104.7   8.7  110   67-177     3-117 (118)
 18 >1z19_A Integrase; protein-DNA  99.5 6.1E-13 1.8E-17  102.2  10.5   91   69-159     1-93  (93)
 19 >1z1b_A Integrase; protein-DNA  99.4 8.5E-13 2.5E-17  101.3  10.3   90   70-159     1-92  (92)
 20 >2kj5_A Phage integrase; GFT N  99.4 3.2E-13 9.4E-18  104.1   6.5  104   65-170     3-109 (116)
 21 >2a3v_A Site-specific recombin  99.2 8.1E-11 2.4E-15   88.4   8.4   88   72-159     3-94  (94)
 22 >1a0p_A Site-specific recombin  99.1 1.9E-10 5.7E-15   86.0   8.5   92   71-162     2-99  (100)
 23 >1xo0_A Recombinase CRE; CRE r  99.1 1.7E-10   5E-15   86.4   7.7  106   72-178     2-113 (114)
 24 >2kkp_A Phage integrase; SAM-l  99.1   7E-11 2.1E-15   88.8   3.8   85   90-174     2-90  (91)
 25 >3ju0_A Phage integrase; four   91.1    0.23 6.7E-06   27.0   3.5   73    8-80     23-107 (108)
 26 >1flo_A FLP recombinase; tyros  81.7     2.9 8.7E-05   19.7   6.8  132  193-325    28-195 (272)
 27 >1aih_A HP1 integrase; DNA int  81.1    0.34   1E-05   25.8  -0.1   32  216-247     2-33  (37)
 28 >1z1b_A Integrase; protein-DNA  77.3     3.1 9.2E-05   19.6   3.9   35    5-43     10-45  (59)
 29 >3jtz_A Integrase; four strand  49.1      14 0.00041   15.4   3.8   44    8-51     23-69  (88)
 30 >2k8e_A UPF0339 protein YEGP;   35.0      17  0.0005   14.8   1.3   39    8-46     18-57  (130)
 31 >2com_A Lysine-specific histon  33.5      24 0.00071   13.8   4.3   66   89-160     4-69  (85)
 32 >2nu8_B SCS-beta, succinyl-COA  31.1      26 0.00078   13.6   3.2   53  110-162    66-120 (152)
 33 >2fp4_B Succinyl-COA ligase [G  31.1      26 0.00078   13.6   3.7   53  110-162    67-121 (152)
 34 >2o5r_A Glutamyl-tRNA syntheta  30.9      26 0.00078   13.5   2.0   50  262-313    29-80  (93)
 35 >1jko_C HIN recombinase, DNA-i  30.4      27  0.0008   13.5   3.9   33  292-325    12-44  (52)
 36 >2ysf_A E3 ubiquitin-protein l  26.6      31 0.00093   13.1   3.6   25    1-25      2-26  (40)
 37 >1irx_A Lysyl-tRNA synthetase;  25.9      32 0.00096   13.0   1.9   49  262-312    28-78  (90)
 38 >1vz0_A PARB, chromosome parti  25.8      32 0.00096   13.0   4.9   30  293-323    27-56  (59)
 39 >1tk7_A CG4244-PB; WW domain,   25.5      33 0.00096   12.9   1.4   23    2-24      2-24  (38)
 40 >1r71_A Transcriptional repres  25.5      33 0.00097   12.9   4.9   33  290-323    41-73  (76)
 41 >1hmj_A RPB5, protein (subunit  24.3      30 0.00088   13.2   1.0   47  170-216    11-61  (78)
 42 >2ysh_A GAS-7, growth-arrest-s  23.2      36  0.0011   12.6   3.6   24    1-24      2-25  (40)
 43 >1j09_A Glutamyl-tRNA syntheta  23.0      37  0.0011   12.6   2.8   50  262-313    37-88  (100)
 44 >2jpc_A SSRB; DNA binding prot  22.3      38  0.0011   12.5   5.5   37  290-327     2-38  (61)
 45 >1ymz_A CC45; artificial prote  21.3      40  0.0012   12.4   3.0   25    1-25      3-27  (43)
 46 >2auw_A Hypothetical protein N  20.7      41  0.0012   12.3   4.5   32  292-324     5-36  (81)
 47 >3c57_A Two component transcri  20.6      41  0.0012   12.3   5.2   36  290-326    31-66  (95)

No 1  
>>1z1b_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 3.80A {Enterobacteria phage lambda} (A:167-356)
Probab=99.87  E-value=3.6e-21  Score=155.73  Aligned_cols=163  Identities=13%  Similarity=0.131  Sum_probs=121.5

Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHCC-CCHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEC--CCCCCCCCHHHHH--HCC
Q ss_conf             64324444211652344566664037-808999989898618873100256640144302--3321133102433--112
Q gi|254780134|r  163 RPKRKTEGIRPWTKEDMQQFKSFWSE-GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTIIT--VEL  237 (348)
Q Consensus       163 ~~~~~~~~~~~~t~~ei~~~~~~~~~-~~~~~~~~~l~~~TG~R~~Ei~~L~~~did~~~--i~~~~~Kt~~~~~--vpl  237 (348)
                      +++.......+++++|+.+|++++.. +...++++.|+++||||.||+++|+|+|||...  +.+...+++....  .+.
T Consensus         3 k~k~~~~~~~~lt~eei~~l~~~~~~~~~~~~~~~~l~~~tGlR~~E~~~l~~~di~~~~~~~~~~~~~~~~~~~~~~~~   82 (190)
T 1z1b_A            3 RAAKSKVRRSRLTADEYLKIYQAAESSPCWLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAIPTALHI   82 (190)
T ss_dssp             CCCCCCCCBCCCCHHHHHHHHHHTTSSCHHHHHHHHHHHHHCCCHHHHTTCBGGGEETTEEEEECTTTCCEEEEETTCEE
T ss_pred             CCCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCH
T ss_conf             22233443322203667664201224550245788999874124466433332212232222223444330212554210


Q ss_pred             H----HHHHHHH-HHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC----CCCCHHHHHHHHHHHHCCCCHHHHH
Q ss_conf             1----6899999-64201332211222457758778999999999983889----9814026999999998489988999
Q gi|254780134|r  238 P----DGFMKLL-AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN----KSAHGVRKFSATISADAGATAHELM  308 (348)
Q Consensus       238 ~----~~l~~~l-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~agi~----~~~H~lRht~at~l~~~G~~~~~i~  308 (348)
                      .    ..+.... .........+|.+..+...........+..+...++..    ...|.+||||||.|.++|+++..|+
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~t~at~l~~~g~~~~~i~  162 (190)
T 1z1b_A           83 DALGISMKETLDKCKEILGGETIIASTRREPLSSGTVSRYFMRARKASGLSFEGDPPTFHELRSLSARLYEKQISDKFAQ  162 (190)
T ss_dssp             TTTTEEHHHHHHHHHHHTCSSBSSCCTTSCCCCHHHHHHHHHHHHHHHTCCCSSBCCCTTHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHH
T ss_conf             25677654433310345777314115567757888999999999998599978899974828999999998699999999


Q ss_pred             HHHCCCCHHHHHHHHHH
Q ss_conf             99649998999999999
Q gi|254780134|r  309 ATYGWKTVDQAETYTKG  325 (348)
Q Consensus       309 ~~lGHss~~~t~~Y~~~  325 (348)
                      ++|||+|..||++|...
T Consensus       163 ~~lGH~~~~~T~~yy~~  179 (190)
T 1z1b_A          163 HLLGHKSDTMASQXRDD  179 (190)
T ss_dssp             HHHTCSSHHHHHHHTCC
T ss_pred             HHHCCCCHHHHHHHHCC
T ss_conf             98389988999988327


No 2  
>>1a0p_A Site-specific recombinase XERD; DNA binding, DNA recombination; 2.50A {Escherichia coli} (A:101-290)
Probab=99.85  E-value=2.8e-21  Score=156.39  Aligned_cols=164  Identities=15%  Similarity=0.136  Sum_probs=106.4

Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHCCCC----HHHHHHHHHHHCCCCCCCCCCCCCCEEEEE--CCCCCCCCCHHHHHHCC
Q ss_conf             432444421165234456666403780----899998989861887310025664014430--23321133102433112
Q gi|254780134|r  164 PKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNN--IFSIKTQKTGTIITVEL  237 (348)
Q Consensus       164 ~~~~~~~~~~~t~~ei~~~~~~~~~~~----~~~~~~~l~~~TG~R~~Ei~~L~~~did~~--~i~~~~~Kt~~~~~vpl  237 (348)
                      ||.+.....++|+||+.+|+++.....    +.+++|.++++||||.||+++|+|+||+.+  .+.+...++......+.
T Consensus         1 PK~~~~~~~~lt~eel~~ll~~~~~~~~~~~r~~~i~~l~~~TGlR~~Ei~~L~~~di~~~~~~i~i~~~~~~~~~~~~~   80 (190)
T 1a0p_A            1 PKLPQRLPKDLSEAQVERLLQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLG   80 (190)
T ss_dssp             --------CCCCHHHHHHHHHCSCTTSHHHHHHHHHHHHHHHHCCCHHHHTTCBGGGEETTTTEEEEECSSSCEEEEECC
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHCCCCHHHCCCCCCEEEECCCCCCCCCCEEC
T ss_conf             64110232222222222222222101133689999999865641204554058499905423289966889820101001


Q ss_pred             HHHHHHHHHH---H------CCCCCCCCCCCCCCCCCHHHHHHH--HHHHHHHCCC-CCCCCHHHHHHHHHHHHCCCCHH
Q ss_conf             1689999964---2------013322112224577587789999--9999998388-99814026999999998489988
Q gi|254780134|r  238 PDGFMKLLAM---T------PIGKETFFINNDKQKMNATQFSIW--FKAKATKAGV-NKSAHGVRKFSATISADAGATAH  305 (348)
Q Consensus       238 ~~~l~~~l~~---~------~~~~~~~~~~~~g~~~~~~~~~~~--~~~~~~~agi-~~~~H~lRht~at~l~~~G~~~~  305 (348)
                      ..........   .      .......+......+.........  +.......+. ..++|++||||+|.+.++|+++.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~Rht~~t~~~~~~~~~~  160 (190)
T 1a0p_A           81 EEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHAFATHLLNHGADLR  160 (190)
T ss_dssp             HHHHHHHHHHHHHTHHHHHTTCCCCBSSBCTTSSBCCHHHHHHHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHCSSCG
T ss_pred             CCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCHH
T ss_conf             11003567777652021122345655443222232111789999999999946899987765188999999998789999


Q ss_pred             HHHHHHCCCCHHHHHHHHHHHH
Q ss_conf             9999964999899999999998
Q gi|254780134|r  306 ELMATYGWKTVDQAETYTKGAD  327 (348)
Q Consensus       306 ~i~~~lGHss~~~t~~Y~~~~~  327 (348)
                      .||.+|||+|+.||++|++..+
T Consensus       161 ~i~~~lGH~s~~~T~~Y~~~~~  182 (190)
T 1a0p_A          161 VVQMLLGHSDLSTTQIYTHVAT  182 (190)
T ss_dssp             GGSSCC--CCCCHHHHHHHHHH
T ss_pred             HHHHHHCCCCHHHHHHHHCCCH
T ss_conf             9998818998899999977899


No 3  
>>1xo0_A Recombinase CRE; CRE recombinase, holliday junction, recombination,complex (recombinase/DNA), hydrolase, ligase/DNA complex; 2.00A {Enterobacteria phage P1} (A:115-310)
Probab=99.84  E-value=5.6e-22  Score=160.97  Aligned_cols=154  Identities=16%  Similarity=0.169  Sum_probs=110.9

Q ss_pred             CCCCHHHHHHHHHHHCCC-----CHHHHHHHHHHHCCCCCCCCCCCCCCEEEE--ECCCCCC------CCCHHHHHHCCH
Q ss_conf             116523445666640378-----089999898986188731002566401443--0233211------331024331121
Q gi|254780134|r  172 RPWTKEDMQQFKSFWSEG-----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKT------QKTGTIITVELP  238 (348)
Q Consensus       172 ~~~t~~ei~~~~~~~~~~-----~~~~~~~~l~~~TG~R~~Ei~~L~~~did~--~~i~~~~------~Kt~~~~~vpl~  238 (348)
                      +++|.+|+.++++.+...     ...++++.|+++||||.+|+++|+|+||+.  +.+.+..      .+......+|+.
T Consensus         2 r~lt~~e~~~l~~~~~~~~~~~~~r~~~~~~l~~~tG~R~~Ei~~L~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (196)
T 1xo0_A            2 LAFERTDFDQVRSLMENSDRCQDIRNLAFLGIAYNTLLKIAEIARIRVKDISRTDGGRMLIHIGRTKTLVSTAGVEKALS   81 (196)
T ss_dssp             CCCCHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHCCCHHHHHHCBGGGEEEEETTEEEEEECCCCSSSSCSCEEEEEC
T ss_pred             CCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCCCCCCCCEEEEHH
T ss_conf             43017888899986403024678999999974223566676653101222222210011000000012456662120047


Q ss_pred             HHHHHHHHHHCCC------------------------CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC--CCCCHHHHH
Q ss_conf             6899999642013------------------------32211222457758778999999999983889--981402699
Q gi|254780134|r  239 DGFMKLLAMTPIG------------------------KETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKF  292 (348)
Q Consensus       239 ~~l~~~l~~~~~~------------------------~~~~~~~~~g~~~~~~~~~~~~~~~~~~agi~--~~~H~lRht  292 (348)
                      +.....+......                        ...++.+..+.+.+..++...++..+...|++  .++|+||||
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~lRht  161 (196)
T 1xo0_A           82 LGVTKLVERWISVSGVADDPNNYLFCRVRKNGVAAPSATSQLSTRALEGIFEATHRLIYGAKDDSGQRYLAWSGHSARVG  161 (196)
T ss_dssp             HHHHHHHHHHHHHHCGGGSTTSBSSCEECTTSCEECCSSCCCCHHHHHHHHHHHHHHHHCSCCCSCCSCSSCCTTHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHH
T ss_conf             88999999888872122112201222134321245433564311588888899999999999972888888788613899


Q ss_pred             HHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf             999999848998899999649998999999999
Q gi|254780134|r  293 SATISADAGATAHELMATYGWKTVDQAETYTKG  325 (348)
Q Consensus       293 ~at~l~~~G~~~~~i~~~lGHss~~~t~~Y~~~  325 (348)
                      |||.+.+.|+++.+|+++|||+|..||++|.+.
T Consensus       162 ~at~l~~~g~~~~~i~~~lGH~~~~~t~~Y~~~  194 (196)
T 1xo0_A          162 AARDMARAGVSIPEIMQAGGWTNVNIVMNYIRN  194 (196)
T ss_dssp             HHHHHHHTTCCHHHHHHHHTCSSSSSHHHHSTT
T ss_pred             HHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHC
T ss_conf             999999878999999988199988999999725


No 4  
>>1z19_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 2.80A {Enterobacteria phage lambda} PDB: 1p7d_A* (A:94-283)
Probab=99.83  E-value=6.6e-20  Score=147.52  Aligned_cols=165  Identities=13%  Similarity=0.119  Sum_probs=117.8

Q ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHCC-CCHHHHHHHHHHHCCCCCCCCCCCCCCEEEE--ECCCCCCCCCHHHHHH--C
Q ss_conf             464324444211652344566664037-8089999898986188731002566401443--0233211331024331--1
Q gi|254780134|r  162 ERPKRKTEGIRPWTKEDMQQFKSFWSE-GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQKTGTIITV--E  236 (348)
Q Consensus       162 ~~~~~~~~~~~~~t~~ei~~~~~~~~~-~~~~~~~~~l~~~TG~R~~Ei~~L~~~did~--~~i~~~~~Kt~~~~~v--p  236 (348)
                      .+|+.......+++.+|+.+|++.+.. +...++++.|+++||||.||+++|+|+|||.  ..+.+...+++....+  +
T Consensus         2 ~k~k~~~~~~~~lt~ee~~~l~~~~~~~~~~~~~~~~l~~~tG~R~~El~~l~~~di~~~~~~~~i~~~~~~~~~~~~~~   81 (190)
T 1z19_A            2 TRAAKSKVRRSRLTADEYLKIYQAAESSPCWLRLAXELAVVTGQRVGDLCEXKWSDIVDGYLYVEQSKTGVKIAIPTALH   81 (190)
T ss_dssp             SCCCCCCCCCCCCCHHHHHHHHHHGGGSCHHHHHHHHHHHHSCCCHHHHTTCBGGGEETTEEEEECTTTCCEEEEETTCE
T ss_pred             CCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCEECCCCCCEEEECCCCC
T ss_conf             11222222223330366764202210022788999999998076533445454202312420000146785133113630


Q ss_pred             CHH----HHHHH-HHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC----CCCCCCHHHHHHHHHHHHCCCCHHHH
Q ss_conf             216----89999-9642013322112224577587789999999999838----89981402699999999848998899
Q gi|254780134|r  237 LPD----GFMKL-LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG----VNKSAHGVRKFSATISADAGATAHEL  307 (348)
Q Consensus       237 l~~----~l~~~-l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ag----i~~~~H~lRht~at~l~~~G~~~~~i  307 (348)
                      ...    ..... ..........+|....|.+.........+........    .....|.+||++||.|+++|+++..|
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~l~~~g~~~~~i  161 (190)
T 1z19_A           82 IDALGISXKETLDKCKEILGGETIIASTRREPLSSGTVSRYFXRARKASGLSFEGDPPTFHELRSLSARLYEKQISDKFA  161 (190)
T ss_dssp             ETTTTEEHHHHHHHHHHHHCSSBSSCCTTSSCCCHHHHHHHHHHHHHHTTCCCSSSCCCGGGHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHH
T ss_conf             14678888888876402577642012111211002677789999999847776789997384999999999869899999


Q ss_pred             HHHHCCCCHHHHHH-HHHHH
Q ss_conf             99964999899999-99999
Q gi|254780134|r  308 MATYGWKTVDQAET-YTKGA  326 (348)
Q Consensus       308 ~~~lGHss~~~t~~-Y~~~~  326 (348)
                      +++|||+|.+||++ |.+..
T Consensus       162 ~~~lGH~~~~~T~~~Y~~~~  181 (190)
T 1z19_A          162 QHLLGHKSDTXASQXRDDRG  181 (190)
T ss_dssp             HHHHTCSSSCC---------
T ss_pred             HHHHCCCCHHHHHHHHCCCH
T ss_conf             99948998899999852748


No 5  
>>2a3v_A Site-specific recombinase INTI4; protein-DNA complex, recombination; HET: DNA; 2.80A {Vibrio cholerae o1 biovar eltor str} (A:95-144,A:243-320)
Probab=99.81  E-value=2.1e-20  Score=150.80  Aligned_cols=113  Identities=23%  Similarity=0.310  Sum_probs=99.7

Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCHHHHHHCCHHHHH
Q ss_conf             64324444211652344566664037808999989898618873100256640144302332113310243311216899
Q gi|254780134|r  163 RPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM  242 (348)
Q Consensus       163 ~~~~~~~~~~~~t~~ei~~~~~~~~~~~~~~~~~~l~~~TG~R~~Ei~~L~~~did~~~i~~~~~Kt~~~~~vpl~~~l~  242 (348)
                      +|+.+.....+++.+|+.++++.++  .+.++++.|++.||||+||+++|+|                            
T Consensus         1 rpk~~~~lp~~l~~~e~~~ll~~~~--~r~~~~~~ll~~~GlR~~E~~~l~~----------------------------   50 (128)
T 2a3v_A            1 RSQLERKLPVVLTRDEIRRLLEIVD--PKHQLPIKLLYGSGLRLMECMRLRV----------------------------   50 (128)
T ss_dssp             CCCCCCCCCCCCCHHHHHHHTTSSC--HHHHHHHHHHHHSCCCHHHHHTCBG----------------------------
T ss_pred             HHHHHCCCCCCCHHHHHHHCCCCCC--HHHHHHHHHHHHHCCCCCCCCCCHH----------------------------
T ss_conf             1000001222310355420000000--2588899998750012233333111----------------------------


Q ss_pred             HHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC--CCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHH
Q ss_conf             99964201332211222457758778999999999983889--9814026999999998489988999996499989999
Q gi|254780134|r  243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE  320 (348)
Q Consensus       243 ~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~agi~--~~~H~lRht~at~l~~~G~~~~~i~~~lGHss~~~t~  320 (348)
                                            +.++++..|+++++++|++  .++|+|||||||.++++|+++..||.+|||+|..||+
T Consensus        51 ----------------------s~~~i~~~~k~~~~~agi~~~~~~H~lRHT~aT~l~~~G~~~~~i~~~lGHss~~~t~  108 (128)
T 2a3v_A           51 ----------------------NETVLQKAVRRSAQEAGIEKTVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTQ  108 (128)
T ss_dssp             ----------------------CHHHHHHHHHHHHHTTCCCSCCCHHHHHHHHHHHHHHTTCCHHHHHHHHTCSSHHHHG
T ss_pred             ----------------------CHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHH
T ss_conf             ----------------------6899999999999985999999871149999999998789999999884899989999


Q ss_pred             HHHHHHH
Q ss_conf             9999998
Q gi|254780134|r  321 TYTKGAD  327 (348)
Q Consensus       321 ~Y~~~~~  327 (348)
                      +|++..+
T Consensus       109 ~Y~h~~~  115 (128)
T 2a3v_A          109 IYTHVLD  115 (128)
T ss_dssp             GGCC---
T ss_pred             HHHCCCH
T ss_conf             9884699


No 6  
>>1ae9_A Lambda integrase; DNA recombination, site-specific recombination; 1.90A {Bacteriophage lambda} (A:)
Probab=99.78  E-value=3.1e-18  Score=136.68  Aligned_cols=154  Identities=12%  Similarity=0.104  Sum_probs=99.7

Q ss_pred             CCCCHHHHHHHHHHHCC-CCHHHHHHHHHHHCCCCCCCCCCCCCCEEEE--ECCCCCCCCCHHHHH--HC----CHHHHH
Q ss_conf             11652344566664037-8089999898986188731002566401443--023321133102433--11----216899
Q gi|254780134|r  172 RPWTKEDMQQFKSFWSE-GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQKTGTIIT--VE----LPDGFM  242 (348)
Q Consensus       172 ~~~t~~ei~~~~~~~~~-~~~~~~~~~l~~~TG~R~~Ei~~L~~~did~--~~i~~~~~Kt~~~~~--vp----l~~~l~  242 (348)
                      ++++++|+.+|++.+.. +...++++.|+++||||+||+++|+|+|||.  +.+.+...+++....  .+    ......
T Consensus         2 r~lt~~ei~~l~~~~~~~~~~~~~~~~l~~~tGlR~~Ei~~L~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (179)
T 1ae9_A            2 SRLTADEYLKIYQAAESSPCWLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAIPTALHIDALGISMKE   81 (179)
T ss_dssp             CCCCHHHHHHHHHHGGGSCHHHHHHHHHHHHHCCCHHHHHHCBGGGEETTEEEEECTTTCCEEEEETTCEEGGGTEEHHH
T ss_pred             CCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHCCCCCEEEECCCCCCCCCCCCEEEECCCHHHHHHHHHHHH
T ss_conf             98999999999998866889999999999997789144402502255310122213465431430365166777775443


Q ss_pred             HHHHH-HCCCCCCCCCCCCCCCCCHHHHHHHHHHH-HHHC-CC--CCCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCCHH
Q ss_conf             99964-20133221122245775877899999999-9983-88--99814026999999998489988999996499989
Q gi|254780134|r  243 KLLAM-TPIGKETFFINNDKQKMNATQFSIWFKAK-ATKA-GV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVD  317 (348)
Q Consensus       243 ~~l~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~a-gi--~~~~H~lRht~at~l~~~G~~~~~i~~~lGHss~~  317 (348)
                      ..... ........+....+...........+... .... +.  ..+.|++||++++.+.++|+++..||++|||++.+
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~g~~~~~i~~~lGH~~~~  161 (179)
T 1ae9_A           82 TLDKCKEILGGETIIASTRREPLSSGTVSRYFMRARKASGLSFEGDPPTFHELRSLSARLYEKQISDKFAQHLLGHKSDT  161 (179)
T ss_dssp             HHHHHHHHTCCSBSSCCTTSCCCCHHHHHHHHHHHHHHHTCCCSSSCCCTTHHHHHHHHHHHHHTCHHHHHHHHTC----
T ss_pred             HHHCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHH
T ss_conf             32101245765313432157876532136666666531123445430268899888999999499999999993899999


Q ss_pred             HHHHHHHH
Q ss_conf             99999999
Q gi|254780134|r  318 QAETYTKG  325 (348)
Q Consensus       318 ~t~~Y~~~  325 (348)
                      ||++|.+.
T Consensus       162 tT~~Y~~~  169 (179)
T 1ae9_A          162 MASQFRDD  169 (179)
T ss_dssp             ----CEEC
T ss_pred             HHHHHHHC
T ss_conf             99998736


No 7  
>>1aih_A HP1 integrase; DNA integration, recombination; 2.50A {Bacteriophage HP1} (A:1-49,A:87-170)
Probab=99.71  E-value=2.7e-17  Score=130.50  Aligned_cols=105  Identities=16%  Similarity=0.125  Sum_probs=89.5

Q ss_pred             CCCCHHHHHHHHHHHCC--CCHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCHHHHHHCCHHHHHHHHHHHC
Q ss_conf             11652344566664037--8089999898986188731002566401443023321133102433112168999996420
Q gi|254780134|r  172 RPWTKEDMQQFKSFWSE--GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTP  249 (348)
Q Consensus       172 ~~~t~~ei~~~~~~~~~--~~~~~~~~~l~~~TG~R~~Ei~~L~~~did~~~i~~~~~Kt~~~~~vpl~~~l~~~l~~~~  249 (348)
                      .-++.+|+..++++++.  ++....++.||+.||||.||+++|+|.-                                 
T Consensus         5 ~~l~~~e~~~l~~~~~~~~~~~l~~~~~~~~~t~~r~~e~~~l~~~~---------------------------------   51 (133)
T 1aih_A            5 AFLYERDIYRLLAECDNSRNPDLGLIVRICLATGARWSEAETLTQLF---------------------------------   51 (133)
T ss_dssp             CCCCHHHHHHHHHHHTTSSSTTHHHHHHHHHHHCCCHHHHHTCBTSS---------------------------------
T ss_pred             CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHCC---------------------------------
T ss_conf             68999999999998646589669999999999776466788764021---------------------------------


Q ss_pred             CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC----CCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf             1332211222457758778999999999983889----981402699999999848998899999649998999999999
Q gi|254780134|r  250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGVN----KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG  325 (348)
Q Consensus       250 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~agi~----~~~H~lRht~at~l~~~G~~~~~i~~~lGHss~~~t~~Y~~~  325 (348)
                                       +++.+.|+++++++|+.    .++|+|||||||.|.++|+|+..||.+|||+|..||++|++.
T Consensus        52 -----------------~~i~~~~~~~~~~agi~~~~~it~H~lRHT~At~l~~~G~d~~~Iq~~lGH~s~~tT~~Y~~~  114 (133)
T 1aih_A           52 -----------------NDAYESFENAVLRAEIELPKGQLTHVLRHTFASHFMMNGGNILVLKEILGHSTIEMTMRYAHF  114 (133)
T ss_dssp             -----------------CCCHHHHHHHHHHTTCCCCTTCTTTHHHHHHHHHHHHTTCCHHHHHHHHTCSSHHHHGGGGGG
T ss_pred             -----------------CCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHHCC
T ss_conf             -----------------110124433456765125876200246887737877447309899998089988999877667


Q ss_pred             H
Q ss_conf             9
Q gi|254780134|r  326 A  326 (348)
Q Consensus       326 ~  326 (348)
                      .
T Consensus       115 ~  115 (133)
T 1aih_A          115 A  115 (133)
T ss_dssp             S
T ss_pred             C
T ss_conf             9


No 8  
>>2kiw_A INT protein; alpha, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Staphylococcus haemolyticus JCSC1435} (A:)
Probab=99.62  E-value=4.2e-15  Score=116.26  Aligned_cols=109  Identities=17%  Similarity=0.200  Sum_probs=100.8

Q ss_pred             CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHHH
Q ss_conf             7899999999835543569788999999999999995699958969999999887515--99789999999999999644
Q gi|254780134|r   70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK--HTPSSAIQFLTSMRVLFKWA  147 (348)
Q Consensus        70 Tl~~l~~~y~~~~~~~~l~~~T~~~~~~~~~~~~~~~g~~~l~~it~~~i~~~~~~~~--~~~~t~n~~~~~l~~~~~~a  147 (348)
                      ||+++++.|+...+ .+++++|+..|+..++++.+.+|+.++.+||+.++++|++.+.  .++.|+|.+++.|+.+|+||
T Consensus         1 T~~~~~~~~l~~~~-~~~s~~T~~~~~~~~~~~~~~~g~~~i~~it~~~i~~~~~~l~~~~s~~t~~~~~~~l~~~~~~a   79 (111)
T 2kiw_A            1 TFKQVADDWLKQYA-NDVKVSSVRAREKAIQHAIERFNTKPIQTIKKHDYQRFVDDISAQYSKNYVDSIVASTNMIFKYA   79 (111)
T ss_dssp             CHHHHHHHHHHHHT-TSSCHHHHHHHHHHHHHHHHHTTSSCGGGCCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999976-11899999999999999999987892999359999999998864403999998999999999999


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHH
Q ss_conf             55200105665103464324444211652344
Q gi|254780134|r  148 VRQEYVAINPCLSVERPKRKTEGIRPWTKEDM  179 (348)
Q Consensus       148 ~~~~~i~~NP~~~v~~~~~~~~~~~~~t~~ei  179 (348)
                      +++|++..||+..|+.++......++++.+|.
T Consensus        80 ~~~~~i~~nP~~~i~~~~~~~~~~~~ls~~Eq  111 (111)
T 2kiw_A           80 YDTRLIKAMPSEGIKRPKKKVSVELEHHHHHH  111 (111)
T ss_dssp             HHTTSCSCCTTTTCCCCSCCCCCCCSSCCCCC
T ss_pred             HHCCCCCCCCHHHCCCCCCCCCHHHHCCCCCC
T ss_conf             99789231818538578888778877112359


No 9  
>>2kob_A Uncharacterized protein; alpha beta, structural genomics, PSI-2, protein structure initiative; NMR {Clostridium leptum dsm 753} (A:)
Probab=99.62  E-value=3.5e-15  Score=116.76  Aligned_cols=103  Identities=17%  Similarity=0.179  Sum_probs=97.1

Q ss_pred             CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             48789999999983554356978899999999999999569995896999999988751599789999999999999644
Q gi|254780134|r   68 PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWA  147 (348)
Q Consensus        68 ~~Tl~~l~~~y~~~~~~~~l~~~T~~~~~~~~~~~~~~~g~~~l~~it~~~i~~~~~~~~~~~~t~n~~~~~l~~~~~~a  147 (348)
                      .+||+++++.|+......+++++|...|+..++++.+.+|+.++.+||+.+|++|++++..++.|+++.++.|+++|+||
T Consensus         1 k~t~~~~~~~~l~~~~~~~~s~~T~~~y~~~~~~~~~~~g~~~i~~it~~~i~~~l~~~~~s~~t~~~~~~~l~~~~~~a   80 (108)
T 2kob_A            1 RDSFGDWAEKFLKSKEADGVSVSQLNSYKNYCRNHLSPLYMKSLSEILPADIQSIINETKLAKNTLKAIRNTASQIFRLA   80 (108)
T ss_dssp             CCBHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHTSHHHHTSBGGGCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHCCCCCCCCCEEEHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
T ss_conf             93699999999998140786846531233333122100277540102688874000010101889999999999999999


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf             55200105665103464324444
Q gi|254780134|r  148 VRQEYVAINPCLSVERPKRKTEG  170 (348)
Q Consensus       148 ~~~~~i~~NP~~~v~~~~~~~~~  170 (348)
                      ++.|++..||+.+|+.++.+...
T Consensus        81 ~~~~~i~~NP~~~i~~~~~~~~~  103 (108)
T 2kob_A           81 IENRAIDFNPADYVRIPKIALEH  103 (108)
T ss_dssp             HHTTSSSSCGGGTCCCCCCCCSS
T ss_pred             HHCCCCCCCHHHCCCCCCCCCCC
T ss_conf             87789236905308578988644


No 10 
>>2oxo_A Integrase; DNA-binding protein, four-helix bundle, DNA binding protein; 2.00A {Unidentified phage} (A:)
Probab=99.57  E-value=1.7e-14  Score=112.40  Aligned_cols=100  Identities=20%  Similarity=0.194  Sum_probs=93.8

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHH
Q ss_conf             87899999999835543569788999999999999995699958969999999887515--9978999999999999964
Q gi|254780134|r   69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK--HTPSSAIQFLTSMRVLFKW  146 (348)
Q Consensus        69 ~Tl~~l~~~y~~~~~~~~l~~~T~~~~~~~~~~~~~~~g~~~l~~it~~~i~~~~~~~~--~~~~t~n~~~~~l~~~~~~  146 (348)
                      +||+++++.|+......+++++|+..|...++++.+.+|+.++.+|++.||++|++.+.  .++.|+++.++.|+++|+|
T Consensus         1 it~~~~~~~~~~~~~~~~~s~~T~~~y~~~~~~~~~~~~~~~i~~i~~~~i~~~~~~l~~~~s~~t~~~~~~~l~~~f~~   80 (103)
T 2oxo_A            1 MTLHSWLDRYEKILASRGIKQKTLINYMSKIKAIRRGLPDAPLEDITTKEIAAMLNGYIDEGKAASAKLIRSTLSDAFRE   80 (103)
T ss_dssp             CBHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSCSCBGGGCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_conf             95999999999999886999999999999999999998549866625899999999999861605545679999999999


Q ss_pred             HHHHHHHHHHHHHCCCCCCCCC
Q ss_conf             4552001056651034643244
Q gi|254780134|r  147 AVRQEYVAINPCLSVERPKRKT  168 (348)
Q Consensus       147 a~~~~~i~~NP~~~v~~~~~~~  168 (348)
                      |++.|+++.||+.+|+.++.+.
T Consensus        81 a~~~g~i~~NP~~~i~~~k~~~  102 (103)
T 2oxo_A           81 AIAEGHITTNHVAATRAAKSEV  102 (103)
T ss_dssp             HHHTTSCSSCTTC---------
T ss_pred             HHHCCCCCCCCHHHCCCCCCCC
T ss_conf             9983985679342267678777


No 11 
>>2khq_A Integrase; all-alpha, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Staphylococcus saprophyticus subsp} (A:)
Probab=99.57  E-value=2.4e-14  Score=111.35  Aligned_cols=103  Identities=15%  Similarity=0.149  Sum_probs=95.4

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHH
Q ss_conf             87899999999835543569788999999999999995699958969999999887515--9978999999999999964
Q gi|254780134|r   69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK--HTPSSAIQFLTSMRVLFKW  146 (348)
Q Consensus        69 ~Tl~~l~~~y~~~~~~~~l~~~T~~~~~~~~~~~~~~~g~~~l~~it~~~i~~~~~~~~--~~~~t~n~~~~~l~~~~~~  146 (348)
                      .||+++++.|+.+....+++++|...|+..++++.+.+|+.++.+|++.+|++|++.+.  .++.|++..++.|+++|+|
T Consensus         2 it~~~~~~~~~~~~~~~~~s~~T~~~y~~~~~~~~~~~~~~~i~~i~~~~i~~~~~~l~~~~s~~t~~~~~~~l~~~f~~   81 (110)
T 2khq_A            2 ITFADYFYQWYEVNKLPHVSESTKRHYESAYKHIKDHFRHKLLKDIKRTEYQKFLNEYGLTHSYETIRKLNSYIRNAFDD   81 (110)
T ss_dssp             CBHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHHHHCSSCBGGGCCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred             EEHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHCCCHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf             83899999999986427789999999999886017773810685436999999999863015889999999999999999


Q ss_pred             HHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf             4552001056651034643244442
Q gi|254780134|r  147 AVRQEYVAINPCLSVERPKRKTEGI  171 (348)
Q Consensus       147 a~~~~~i~~NP~~~v~~~~~~~~~~  171 (348)
                      |++.|+++.||+.+++.++.+.+..
T Consensus        82 a~~~~~i~~nP~~~i~~~~~~~~~~  106 (110)
T 2khq_A           82 AIHEGYVIKNPTYKAELHASVLEHH  106 (110)
T ss_dssp             HHHTTCCCCCGGGGCCCCCGGGCCC
T ss_pred             HHHCCCCCCCCCCCCEECCCHHHHC
T ss_conf             9988791019877787464311211


No 12 
>>2kd1_A DNA integration/recombination/invertion protein; protein structure initiative, structural genomics, unknown function, PSI-2; HET: DNA; NMR {Bacillus cereus atcc 14579} (A:)
Probab=99.54  E-value=5e-14  Score=109.26  Aligned_cols=111  Identities=15%  Similarity=0.253  Sum_probs=100.3

Q ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-HHHHHCCCCHHHCCHHHHHHHHHHH---CCCHHHHHHHHHHHH
Q ss_conf             344878999999998355435697889999999999-9999569995896999999988751---599789999999999
Q gi|254780134|r   66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFLTSMR  141 (348)
Q Consensus        66 ~~~~Tl~~l~~~y~~~~~~~~l~~~T~~~~~~~~~~-~~~~~g~~~l~~it~~~i~~~~~~~---~~~~~t~n~~~~~l~  141 (348)
                      ....||.++++.|+...+ .+++++|+..|+..++. +.+.+|+.++.+|++.+|++|++.+   +.+++|++.+++.|+
T Consensus         3 ~~~~t~~~~~~~~l~~~~-~~~s~~T~~~y~~~l~~~~~~~~~~~~i~~i~~~~i~~~~~~l~~~g~s~~t~~~~~~~l~   81 (118)
T 2kd1_A            3 PSKLSYGEYLESWFNTKR-HSVGIQTAKVLKGYLNSRIIPSLGNIKLAKLTSLHMQNYVNSLRDEGLKRGTIEKIIKVIR   81 (118)
T ss_dssp             CSCSBHHHHHHHHHHHHH-HHHCHHHHHHHHHHHTTTHHHHTTSSBGGGCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHHCCEEHHHCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf             760689999999999984-7389999999999999876288578079998999999999998863148999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHH
Q ss_conf             999644552001056651034643244442116523
Q gi|254780134|r  142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE  177 (348)
Q Consensus       142 ~~~~~a~~~~~i~~NP~~~v~~~~~~~~~~~~~t~~  177 (348)
                      ++|+||++.|++..||+.+++.|+.......++|+|
T Consensus        82 ~~~~~a~~~~~i~~nP~~~i~~~k~~~~~~~~lt~E  117 (118)
T 2kd1_A           82 NSLEHAIDLELITKNVAAKTKLPKADKEELEHHHHH  117 (118)
T ss_dssp             HHHHHHHHTTSCSSCTTTTCCCCSCCCCSSSCCCCC
T ss_pred             HHHHHHHHCCCCCCCCHHHCCCCCCCCCCCCCCCCC
T ss_conf             999999988895639184192899999751023667


No 13 
>>2khv_A Phage integrase; solution structure, GFT, NESG, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Nitrosospira multiformis atcc 25196} (A:)
Probab=99.53  E-value=2.8e-14  Score=110.90  Aligned_cols=102  Identities=12%  Similarity=0.089  Sum_probs=93.4

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HHHHHHCCCCHHHCCHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHH
Q ss_conf             87899999999835543569788999999999-99999569995896999999988751-59978999999999999964
Q gi|254780134|r   69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR-KHTPSSAIQFLTSMRVLFKW  146 (348)
Q Consensus        69 ~Tl~~l~~~y~~~~~~~~l~~~T~~~~~~~~~-~~~~~~g~~~l~~it~~~i~~~~~~~-~~~~~t~n~~~~~l~~~~~~  146 (348)
                      +||+++++.|+.......++++|+..|...++ ++.+.+|+.++.+|++.+++++++.+ ..++.|+|++++.|+++|+|
T Consensus         1 iT~~~~~~~~~~~~~~~~~~~~T~~~~~~~~~~~i~~~~g~~~i~~it~~~i~~~~~~~~~~s~~t~~~~~~~l~~~f~~   80 (106)
T 2khv_A            1 MTFSECAALYIKAHRSSWKNTKHADQWTNTIKTYCGPVIGPLSVQDVDTKLIMKVLDPIWEQKPETASRLRGRIESVLDW   80 (106)
T ss_dssp             CBHHHHHHHHHHTTGGGGTTSTHHHHHHHHHHHHTHHHHTTSBSSSCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             97999999999984204798669999999999873523499649997679999999999963289999999999999999


Q ss_pred             HHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf             455200105665103464324444
Q gi|254780134|r  147 AVRQEYVAINPCLSVERPKRKTEG  170 (348)
Q Consensus       147 a~~~~~i~~NP~~~v~~~~~~~~~  170 (348)
                      |++.|+++.||+.+|+.++...+.
T Consensus        81 A~~~~~i~~Np~~~i~~~~~~~k~  104 (106)
T 2khv_A           81 ATVRGYREGDNPARWRGYLEHHHH  104 (106)
T ss_dssp             HHHHTSSCSCCTTSCSSTTTTTTC
T ss_pred             HHHCCCCCCCCHHHHHCCCCCCCC
T ss_conf             999297678981888730201434


No 14 
>>2key_A Putative phage integrase; protein structure, PSI, NESG, structural genomics, unknown function, protein structure initiative; NMR {Bacteroides fragilis nctc 9343} (A:)
Probab=99.51  E-value=6.2e-14  Score=108.68  Aligned_cols=104  Identities=12%  Similarity=0.204  Sum_probs=93.6

Q ss_pred             CCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHH----CCCHHHHHHHHHHH
Q ss_conf             23448789999999983554356978899999999999999569995896999999988751----59978999999999
Q gi|254780134|r   65 RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----KHTPSSAIQFLTSM  140 (348)
Q Consensus        65 ~~~~~Tl~~l~~~y~~~~~~~~l~~~T~~~~~~~~~~~~~~~g~~~l~~it~~~i~~~~~~~----~~~~~t~n~~~~~l  140 (348)
                      .....||.++++.|++..+ .+++++|...|+..+++|.+.+|+.++.+|++.++++|++.+    +.+++|+|.+++.|
T Consensus         4 ~~~~~t~~~~~~~~l~~~~-~~~~~~T~~~y~~~l~~~~~~~g~~~l~~i~~~~i~~~~~~l~~~~~~s~~t~~~~~~~l   82 (112)
T 2key_A            4 PSDFKSFHDFVASYMKTYS-RRLEIGTFRHHKSCMRKFKEYCEGLQFHELTEDFLRDYLIYMKKTLCNADSTAQRNLSTI   82 (112)
T ss_dssp             TTCCCSHHHHHHHHTHHHH-TTSCHHHHHHHHHHHHHTTTSCSCCCTTTCCHHHHHHHHHHHHHTSCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf             5488899999999999998-369998999999999999876125997984988899999999887741806889999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf             99996445520010566510346432444
Q gi|254780134|r  141 RVLFKWAVRQEYVAINPCLSVERPKRKTE  169 (348)
Q Consensus       141 ~~~~~~a~~~~~i~~NP~~~v~~~~~~~~  169 (348)
                      +.+|+||++.|++..||+.+|+.|+.+.+
T Consensus        83 ~~~~~~a~~~~~i~~nP~~~i~~pk~~kr  111 (112)
T 2key_A           83 KIYVSAAIKKGYMENDPFKDFGLEHHHHH  111 (112)
T ss_dssp             HHHHHHHHHTTSCCSCHHHHHTCCCCCSC
T ss_pred             HHHHHHHHHCCCCCCCCCCCEEEEECCCC
T ss_conf             99999999888942187201053324667


No 15 
>>2kkv_A Integrase; protein structure, PSI, nesgc, structural genomics, protein structure initiative, northeast structural genomics consortium; NMR {Salmonella enterica subsp} (A:)
Probab=99.48  E-value=4.7e-14  Score=109.45  Aligned_cols=113  Identities=16%  Similarity=0.266  Sum_probs=97.8

Q ss_pred             CCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HHHHHHCCCCHHHCCHHHHHHHHHHHC--CCHHHHHHHHHHHH
Q ss_conf             234487899999999835543569788999999999-999995699958969999999887515--99789999999999
Q gi|254780134|r   65 RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRK--HTPSSAIQFLTSMR  141 (348)
Q Consensus        65 ~~~~~Tl~~l~~~y~~~~~~~~l~~~T~~~~~~~~~-~~~~~~g~~~l~~it~~~i~~~~~~~~--~~~~t~n~~~~~l~  141 (348)
                      .....||.+++++|+...  .+++++|...|+..++ ++.+.||+.++.+|++.+|++|++.+.  .++++++..++.|+
T Consensus         3 ~~~~~t~~~~~~~~~~~~--~~~~~~T~~~y~~~~~~~i~~~~g~~~i~~it~~~i~~~~~~l~~~~~~~t~~~~~~~l~   80 (121)
T 2kkv_A            3 NSGAYTFETIAREWHESN--KRWSEDHRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKEVDTSGKHDVAQRLQQRVT   80 (121)
T ss_dssp             SCCCCSHHHHHHHHHTTC--CSSCHHHHHHHHHHHHHHHSSSSTTSCTTCCCSGGGHHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHC--CCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHCHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf             424048999999999977--978884999999999989999938826999763766777748750478799999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCC--CCCCCCCCCCHHHH
Q ss_conf             999644552001056651034643--24444211652344
Q gi|254780134|r  142 VLFKWAVRQEYVAINPCLSVERPK--RKTEGIRPWTKEDM  179 (348)
Q Consensus       142 ~~~~~a~~~~~i~~NP~~~v~~~~--~~~~~~~~~t~~ei  179 (348)
                      ++|+||++.|++..||+.+++.+.  .......+++.+||
T Consensus        81 ~~~~~Av~~~~i~~NP~~~v~~~~~~~~~~~~~~lt~~Ei  120 (121)
T 2kkv_A           81 AIMRYAVQNDYIDSNPASDMAGALSTTKARHYPLEHHHHH  120 (121)
T ss_dssp             HHHHHHHHTTSSCSCSCSSSSCCCSCCCCCSSCCTTCCCC
T ss_pred             HHHHHHHHCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCC
T ss_conf             9999999878901186878987469999898998766677


No 16 
>>2kj9_A Integrase; DNA_BRE_C superfamily, INTB, PSI-2, structural genomics, protein structure initiative; NMR {Pectobacterium atrosepticum} (A:)
Probab=99.48  E-value=1.5e-13  Score=106.21  Aligned_cols=106  Identities=14%  Similarity=0.224  Sum_probs=93.4

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HHHHHHCCCCHHHCCHHHHHHHHHHHCC--CHHHHHHHHHH
Q ss_conf             23234487899999999835543569788999999999-9999956999589699999998875159--97899999999
Q gi|254780134|r   63 SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH--TPSSAIQFLTS  139 (348)
Q Consensus        63 ~~~~~~~Tl~~l~~~y~~~~~~~~l~~~T~~~~~~~~~-~~~~~~g~~~l~~it~~~i~~~~~~~~~--~~~t~n~~~~~  139 (348)
                      .......||+++++.|+...  .+++++|...|+..++ ++.+.||+.++.+|+..+|+.+++.+..  ++.++++.++.
T Consensus         5 ~~~~~~~Tf~~~~~~~l~~~--~~~~~~T~~~~~~~~~~~i~~~~g~~~i~~it~~~i~~~~~~~~~~~s~~t~~~~~~~   82 (118)
T 2kj9_A            5 EKRNNTRAFKTVAKSWFATK--TTWSEDYQRSVWTRLETYLFPDIGNKDIAELDTGDLLVPIKKIEKLGYLEIAMRVKQY   82 (118)
T ss_dssp             SSSSSCSBHHHHHHHHHHTC--CSSCHHHHHHHHHHHHHTSSTTGGGSBGGGCCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred             HHHHCCCCHHHHHHHHHHHC--CCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf             87773477999999999987--8888879999999999887898678859995589999999999990792889999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf             9999964455200105665103464324444
Q gi|254780134|r  140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEG  170 (348)
Q Consensus       140 l~~~~~~a~~~~~i~~NP~~~v~~~~~~~~~  170 (348)
                      |+++|+||++.|+|+.||+..|+.++.....
T Consensus        83 l~~if~~Av~~~~i~~NP~~~v~~~k~~~~~  113 (118)
T 2kj9_A           83 ATAIMRYAVQQKMIRFNPAYDLEGAVQKLEH  113 (118)
T ss_dssp             HHHHHHHHHHTTSSSSCHHHHCCSCSSSSSS
T ss_pred             HHHHHHHHHHCCCCCCCCHHHHHHHCCCCCC
T ss_conf             9999999998788121848889876689865


No 17 
>>2kj8_A Putative prophage CPS-53 integrase; INTS, INTC, YFDB, DNA integration, DNA recombination, structural genomics, protein structure initiative; NMR {Escherichia coli k-12} (A:)
Probab=99.46  E-value=2.5e-13  Score=104.69  Aligned_cols=110  Identities=11%  Similarity=0.182  Sum_probs=94.3

Q ss_pred             CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-HHHHHCCCCHHHCCHHHHHHHHHHHC--CCHHHHHHHHHHHHHH
Q ss_conf             44878999999998355435697889999999999-99995699958969999999887515--9978999999999999
Q gi|254780134|r   67 KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESRK--HTPSSAIQFLTSMRVL  143 (348)
Q Consensus        67 ~~~Tl~~l~~~y~~~~~~~~l~~~T~~~~~~~~~~-~~~~~g~~~l~~it~~~i~~~~~~~~--~~~~t~n~~~~~l~~~  143 (348)
                      ...||.++++.|+.... .+++++|+..|...++. +.+.||+.++.+|+..++++|++.+.  .++.+++..++.|+.+
T Consensus         3 ~~~t~~~~~~~~~~~~~-~~~~~~t~~~~~~~~~~~i~~~~g~~~l~~i~~~~i~~~~~~~~~~~s~~t~~~~~~~l~~~   81 (118)
T 2kj8_A            3 NNNSFSAIYKEWYEHKK-QVWSVGYATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEV   81 (118)
T ss_dssp             STTBHHHHHHHHHHHHT-TTSCHHHHHHHHHHHHHHHHHHHTTSBTTSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf             54559999999999860-41899999999999999978885878099918999999999999839944889999999999


Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCC--CCCCCCCHH
Q ss_conf             9644552001056651034643244--442116523
Q gi|254780134|r  144 FKWAVRQEYVAINPCLSVERPKRKT--EGIRPWTKE  177 (348)
Q Consensus       144 ~~~a~~~~~i~~NP~~~v~~~~~~~--~~~~~~t~~  177 (348)
                      |+||++.|++..||+.+++.++...  +...+++.|
T Consensus        82 ~~~A~~~g~i~~NP~~~i~~~~~~~~~~~~~~lt~E  117 (118)
T 2kj8_A           82 FRYAIVTGRAKYNPAPDLADAMKGYRKKNLEHHHHH  117 (118)
T ss_dssp             HHHHHHTTSCSCCSHHHHHHHHHHGGGTSCCSSCSC
T ss_pred             HHHHHHCCCHHCCCHHHHHHHCCCCCCCCCCCCCCC
T ss_conf             999998688300877789863699888777555677


No 18 
>>1z19_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 2.80A {Enterobacteria phage lambda} PDB: 1p7d_A* (A:1-93)
Probab=99.46  E-value=6.1e-13  Score=102.23  Aligned_cols=91  Identities=21%  Similarity=0.227  Sum_probs=86.0

Q ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHH--CCCHHHHHHHHHHHHHHHHH
Q ss_conf             8789999999983554356978899999999999999569995896999999988751--59978999999999999964
Q gi|254780134|r   69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPSSAIQFLTSMRVLFKW  146 (348)
Q Consensus        69 ~Tl~~l~~~y~~~~~~~~l~~~T~~~~~~~~~~~~~~~g~~~l~~it~~~i~~~~~~~--~~~~~t~n~~~~~l~~~~~~  146 (348)
                      .||+++++.|+.....++++++|...|...++++.+.||+.++.+|++.+|+++++.+  ..+++++++.++.|+.+|+|
T Consensus         1 ~T~~~~~~~~~~~~~~~~~~~~T~~~y~~~~~~~~~~~g~~~i~~it~~~i~~~~~~~~~~~s~~t~~~~~~~l~~~f~~   80 (93)
T 1z19_A            1 XTLHSWLDRYEKILASRGIKQKTLINYXSKIKAIRRGLPDAPLEDITTKEIAAXLNGYIDEGKAASAKLIRSTLSDAFRE   80 (93)
T ss_dssp             CBHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHSCSCBGGGCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCC
T ss_conf             96999999999999875999999999999999999997699968799999999999998720589999999988887424


Q ss_pred             HHHHHHHHHHHHH
Q ss_conf             4552001056651
Q gi|254780134|r  147 AVRQEYVAINPCL  159 (348)
Q Consensus       147 a~~~~~i~~NP~~  159 (348)
                      |+++|++..||+.
T Consensus        81 a~~~~~i~~NP~a   93 (93)
T 1z19_A           81 AIAEGHITTNHVA   93 (93)
T ss_dssp             HHHTTSCSCCTTT
T ss_pred             CCHHHHHHHHHCC
T ss_conf             4124454221011


No 19 
>>1z1b_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 3.80A {Enterobacteria phage lambda} (A:75-166)
Probab=99.45  E-value=8.5e-13  Score=101.28  Aligned_cols=90  Identities=21%  Similarity=0.197  Sum_probs=85.6

Q ss_pred             CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHHH
Q ss_conf             7899999999835543569788999999999999995699958969999999887515--99789999999999999644
Q gi|254780134|r   70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK--HTPSSAIQFLTSMRVLFKWA  147 (348)
Q Consensus        70 Tl~~l~~~y~~~~~~~~l~~~T~~~~~~~~~~~~~~~g~~~l~~it~~~i~~~~~~~~--~~~~t~n~~~~~l~~~~~~a  147 (348)
                      ||+++++.|+...+..+++++|...|+..++++.+.+|+.++.+|++.+|+.|++.+.  .++++++++++.|+++|+||
T Consensus         1 T~~~~~~~~~~~~~~~~~s~~T~~~y~~~~~~~~~~~g~~~i~~i~~~~i~~~~~~~~~~~s~~t~~~~~~~l~~~~~~a   80 (92)
T 1z1b_A            1 TLHSWLDRYEKILASRGIKQKTLINYMSKIKAIRRGLPDAPLEDITTKEIAAMLNGYIDEGKAASAKLIRSTLSDAFREA   80 (92)
T ss_dssp             BHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHSCSCBGGGCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_conf             29999999999986457888799999999999999976898788129999999999985137999999999976656421


Q ss_pred             HHHHHHHHHHHH
Q ss_conf             552001056651
Q gi|254780134|r  148 VRQEYVAINPCL  159 (348)
Q Consensus       148 ~~~~~i~~NP~~  159 (348)
                      ++.|++..||+.
T Consensus        81 v~~~~i~~NP~a   92 (92)
T 1z1b_A           81 IAEGHITTNHVA   92 (92)
T ss_dssp             HHTTSCSSCTTT
T ss_pred             HHCCCCCCCCCC
T ss_conf             100123332222


No 20 
>>2kj5_A Phage integrase; GFT NMR, PSI-2, NESG, structural genomics, protein structure initiative; NMR {Nitrosospira multiformis atcc 25196} (A:)
Probab=99.42  E-value=3.2e-13  Score=104.07  Aligned_cols=104  Identities=17%  Similarity=0.229  Sum_probs=92.2

Q ss_pred             CCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-HHHHHCCCCHHHCCHHHHHHHHHHHC--CCHHHHHHHHHHHH
Q ss_conf             2344878999999998355435697889999999999-99995699958969999999887515--99789999999999
Q gi|254780134|r   65 RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESRK--HTPSSAIQFLTSMR  141 (348)
Q Consensus        65 ~~~~~Tl~~l~~~y~~~~~~~~l~~~T~~~~~~~~~~-~~~~~g~~~l~~it~~~i~~~~~~~~--~~~~t~n~~~~~l~  141 (348)
                      .....||+++++.|+...  ..++++|..+|+..++. +.+.+|+.++.+||+.++++|++.+.  .++.+++++++.|+
T Consensus         3 ~~~~~tf~~~~~~~l~~~--~~~~~~t~~~~~~~~~~~i~~~~g~~~i~~it~~~i~~~~~~l~~~~~~~t~~~~~~~l~   80 (116)
T 2kj5_A            3 EKNAYTVAQLADEYFERM--IAGRWKHPNIVRSRIEKDIKPAIGSLKVEDVKPRHIDDVLKAVMKRGAPSIANDTLRWLK   80 (116)
T ss_dssp             SSSCCBHHHHHHHHHHHH--TTTSCSCHHHHHHHHHHTTSCSGGGSBSSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHH--HHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHCHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf             766552999999999987--467887199999999989799887986787064778999888764023168889999999


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf             99964455200105665103464324444
Q gi|254780134|r  142 VLFKWAVRQEYVAINPCLSVERPKRKTEG  170 (348)
Q Consensus       142 ~~~~~a~~~~~i~~NP~~~v~~~~~~~~~  170 (348)
                      ++|+||++.|+++.||+.+|+.++.....
T Consensus        81 ~~f~~Av~~~~i~~NP~~~i~~~~~~~~~  109 (116)
T 2kj5_A           81 RMFNYAIKRHIIEYNPAAAFDPGDAGGKL  109 (116)
T ss_dssp             HHHHHHHHTTSCSSCGGGGSCCCCCCCCC
T ss_pred             HHHHHHHHCCCCCCCCCCCCCCCCCCCCC
T ss_conf             99999998789567973469723589731


No 21 
>>2a3v_A Site-specific recombinase INTI4; protein-DNA complex, recombination; HET: DNA; 2.80A {Vibrio cholerae o1 biovar eltor str} (A:1-94)
Probab=99.20  E-value=8.1e-11  Score=88.40  Aligned_cols=88  Identities=10%  Similarity=0.023  Sum_probs=81.3

Q ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999983554356978899999999999999569995896999999988751----599789999999999999644
Q gi|254780134|r   72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----KHTPSSAIQFLTSMRVLFKWA  147 (348)
Q Consensus        72 ~~l~~~y~~~~~~~~l~~~T~~~~~~~~~~~~~~~g~~~l~~it~~~i~~~~~~~----~~~~~t~n~~~~~l~~~~~~a  147 (348)
                      .++++.|+.....++++++|+..|+..++.|...+|+.++.+|+..+|..|+..+    +.++.|+|..++.|++||+|+
T Consensus         3 ~~~i~~~l~~l~~~~~s~~Ti~~y~~~l~~f~~~l~~~~~~~i~~~~i~~~~~~l~~~~~~s~~T~~~~l~~lr~f~~~~   82 (94)
T 2a3v_A            3 SQFLLSVREFMQTRYYAKKTIEAYLHWITRYIHFHNKKHPSLMGDKEVEEFLTYLAVQGKVATKTQSLALNSLSFLYKEI   82 (94)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTSSSCCGGGCCHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf             89999999999984989999999999999999997107944499999999999999838988326999999998887510


Q ss_pred             HHHHHHHHHHHH
Q ss_conf             552001056651
Q gi|254780134|r  148 VRQEYVAINPCL  159 (348)
Q Consensus       148 ~~~~~i~~NP~~  159 (348)
                      ++.|+++.||++
T Consensus        83 ~~~~~i~~nP~~   94 (94)
T 2a3v_A           83 LKTPLSLEIRFQ   94 (94)
T ss_dssp             SSCCCCTTCCCC
T ss_pred             HCCCCCCCCCCH
T ss_conf             001245432200


No 22 
>>1a0p_A Site-specific recombinase XERD; DNA binding, DNA recombination; 2.50A {Escherichia coli} (A:1-100)
Probab=99.15  E-value=1.9e-10  Score=85.98  Aligned_cols=92  Identities=13%  Similarity=0.224  Sum_probs=81.9

Q ss_pred             HHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHC--CCCHHHCCHHHHHHHHHHHC---CCHHHHHHHHHHHHHHH
Q ss_conf             89999999983554-35697889999999999999956--99958969999999887515---99789999999999999
Q gi|254780134|r   71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESRK---HTPSSAIQFLTSMRVLF  144 (348)
Q Consensus        71 l~~l~~~y~~~~~~-~~l~~~T~~~~~~~~~~~~~~~g--~~~l~~it~~~i~~~~~~~~---~~~~t~n~~~~~l~~~~  144 (348)
                      +.++++.|+..... ++++++|+..|...+++|...++  ..++.+|+..+|..|+..+.   .++.|+|+.++.|+.+|
T Consensus         2 l~~~~~~fl~~l~~~~~~s~~T~~~Y~~~l~~f~~~~~~~~~~~~~i~~~~i~~~~~~l~~~~~s~~Ti~~~l~~lr~f~   81 (100)
T 1a0p_A            2 DLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGYKATSSARLLSAVRRLF   81 (100)
T ss_dssp             HHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHTSCCTTTCCHHHHHHHHHSCC-------CHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
T ss_conf             87999999999999869179999999999999999998749992669999999999997640023321256777765411


Q ss_pred             HHHHHHHHHHHHHHHCCC
Q ss_conf             644552001056651034
Q gi|254780134|r  145 KWAVRQEYVAINPCLSVE  162 (348)
Q Consensus       145 ~~a~~~~~i~~NP~~~v~  162 (348)
                      +||+++|+++.||+.+|+
T Consensus        82 ~~~~~~~~i~~nP~~~i~   99 (100)
T 1a0p_A           82 QYLYREKFREDDPSAHLA   99 (100)
T ss_dssp             HHHHHTTSSSSCTTSCC-
T ss_pred             HHHHHCCCCCCHHHHCCC
T ss_conf             333212432210110025


No 23 
>>1xo0_A Recombinase CRE; CRE recombinase, holliday junction, recombination,complex (recombinase/DNA), hydrolase, ligase/DNA complex; 2.00A {Enterobacteria phage P1} (A:1-114)
Probab=99.13  E-value=1.7e-10  Score=86.36  Aligned_cols=106  Identities=8%  Similarity=-0.021  Sum_probs=86.7

Q ss_pred             HHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHC--CCCHHHCCHHHHHHHHHHH---CCCHHHHHHHHHHHHHHHH
Q ss_conf             9999999983554-35697889999999999999956--9995896999999988751---5997899999999999996
Q gi|254780134|r   72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESR---KHTPSSAIQFLTSMRVLFK  145 (348)
Q Consensus        72 ~~l~~~y~~~~~~-~~l~~~T~~~~~~~~~~~~~~~g--~~~l~~it~~~i~~~~~~~---~~~~~t~n~~~~~l~~~~~  145 (348)
                      +++++.|+..... ++++++|+.+|...++.|...++  +.++.+|+..+|.+|+..+   +.+++|+|++++.|+.+|+
T Consensus         2 ~~~~~~fl~~~~~~~~~s~~T~~~Y~~~l~~f~~~l~~~~~~~~~i~~~~i~~y~~~~~~~~~s~~Ti~~~l~~l~~f~~   81 (114)
T 1xo0_A            2 DEVRKNLMDMFRDRQAFSEHTWKMLLSVCRSWAAWCKLNNRKWFPAEPEDVRDYLLYLQARGLAVKTIQQHLGQLNMLHR   81 (114)
T ss_dssp             HHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHHHHHHHHTCCCSSCCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf             78999999999975487999999999999999999997499967899999999999998779998999999999988899


Q ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHH
Q ss_conf             445520010566510346432444421165234
Q gi|254780134|r  146 WAVRQEYVAINPCLSVERPKRKTEGIRPWTKED  178 (348)
Q Consensus       146 ~a~~~~~i~~NP~~~v~~~~~~~~~~~~~t~~e  178 (348)
                      ||...|++..||+..+.. +.+.....+++.+|
T Consensus        82 ~~~~~~~~~~~p~~~v~~-~~~~~~p~~lt~~e  113 (114)
T 1xo0_A           82 RSGLPRPSDSNAVSLVMR-RIRKENVDAGERAK  113 (114)
T ss_dssp             HHTSCCGGGSHHHHHHHH-HHHHHHHHTTCCCC
T ss_pred             HHHHCCCCCCCCHHHHCC-CCCCCCCCCCCCCC
T ss_conf             987315433532444213-32224555452112


No 24 
>>2kkp_A Phage integrase; SAM-like domain, alpha-helical bundle, structural genomics, PSI-2, protein structure initiative; NMR {Moorella thermoacetica atcc 39073} (A:27-117)
Probab=99.08  E-value=7e-11  Score=88.81  Aligned_cols=85  Identities=15%  Similarity=0.204  Sum_probs=74.4

Q ss_pred             HHHHHHHHHHHH-HHHHHCCCCHHHCCHHHHHHHHHHH---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             889999999999-9999569995896999999988751---599789999999999999644552001056651034643
Q gi|254780134|r   90 NSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK  165 (348)
Q Consensus        90 ~T~~~~~~~~~~-~~~~~g~~~l~~it~~~i~~~~~~~---~~~~~t~n~~~~~l~~~~~~a~~~~~i~~NP~~~v~~~~  165 (348)
                      +|+..|+..++. +.+.+|+.++.+||..++++|++.+   +.++.|++++++.|+++|+||++.++++.||+..|+.|+
T Consensus         2 ~T~~~y~~~~~~~~~~~~g~~~i~~it~~~i~~~~~~l~~~g~s~~t~~~~~~~l~~~f~~a~~~~~i~~nP~~~i~~pk   81 (91)
T 2kkp_A            2 STWESYETVLRLHVIPTLGSIPLKKLQPADIQRLYASKLESGLSPTRVRYIHVVLHEAMSQARESGLLLQNPTEAAKPPR   81 (91)
T ss_dssp             CCCSHHHHHHHHHHCCCCCTSCTTTCCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTTTSCSSCGGGGSCCCC
T ss_pred             CCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCC
T ss_conf             50989999999989999588737667079999999999975877688999999999999999988994419184297899


Q ss_pred             CCCCCCCCC
Q ss_conf             244442116
Q gi|254780134|r  166 RKTEGIRPW  174 (348)
Q Consensus       166 ~~~~~~~~~  174 (348)
                      ......+++
T Consensus        82 ~~~~~~~~l   90 (91)
T 2kkp_A           82 HPLEHHHHH   90 (91)
T ss_dssp             CCCCCCCCC
T ss_pred             CCCCCCCCC
T ss_conf             986556678


No 25 
>>3ju0_A Phage integrase; four stranded beta-sheet, DNA binding protein; 1.60A {Pectobacterium atrosepticum} (A:)
Probab=91.08  E-value=0.23  Score=26.97  Aligned_cols=73  Identities=10%  Similarity=-0.055  Sum_probs=39.7

Q ss_pred             CCCCEEEECCCCCEEEEEEE---CCCCEEECCCCCCHHHHHHHHHH------HHCCCCCHHH---HHCCCCCCCCHHHHH
Q ss_conf             79818962289938999970---89565755889998899999999------8534310123---102323448789999
Q gi|254780134|r    8 PPFVTKERTRHGKIIYYFRK---GHGRRIRLPYPHESTFIPAYMSA------LTGSTPKREY---INSPRKKPTTLKWLI   75 (348)
Q Consensus         8 p~~v~~~~~r~G~~~~~~r~---~~~~~~~~~~~~~~~~~~~~~~a------~~~~~~~~~~---~~~~~~~~~Tl~~l~   75 (348)
                      .++++-....+|...|+|+.   +..+++.++....-...+|...+      ++...+....   .........||.+++
T Consensus        23 ~~GL~l~V~~sG~k~~~~ry~~~Gk~~~~~lG~~p~~sl~~AR~~a~~~~~~~~~G~DP~~~kk~~~~~~~~~~T~~~~~  102 (108)
T 3ju0_A           23 GFGMHLLVHPNGSKYWRLSYRFEKKQRLLALGVYPAVSLADARQRRDEAKKLLAAGIDPSAKKQADNKTIQEKRNNTRLE  102 (108)
T ss_dssp             ETTEEEEECTTSCEEEEEEEEETTEEEEEEEEEETTSCHHHHHHHHHHHHHHHHTTCCGGGSCGGGSCCHHHHC------
T ss_pred             CCCEEEEEECCCCEEEEEEEECCCCEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCEEE
T ss_conf             99459998469866889841012411114567888737999999999999999869998999999999999998688631


Q ss_pred             HHHHH
Q ss_conf             99998
Q gi|254780134|r   76 SEYRK   80 (348)
Q Consensus        76 ~~y~~   80 (348)
                      +.|+.
T Consensus       103 ~~~~~  107 (108)
T 3ju0_A          103 HHHHH  107 (108)
T ss_dssp             -----
T ss_pred             CCCCC
T ss_conf             01466


No 26 
>>1flo_A FLP recombinase; tyrosine recombinase, protein-DNA complex, holliday- junction, domain-swapping, ligase, lyase/DNA complex; 2.65A {Saccharomyces cerevisiae} (A:151-422)
Probab=81.71  E-value=2.9  Score=19.74  Aligned_cols=132  Identities=17%  Similarity=0.192  Sum_probs=71.1

Q ss_pred             HHHHHHHHHCCCCCCCCCCCCCCEEE---E----ECC--CCCCCCCHHHHHH---CCH---HHHH---HHHHHH-CCCCC
Q ss_conf             99989898618873100256640144---3----023--3211331024331---121---6899---999642-01332
Q gi|254780134|r  193 RLAFEFLLYSGLRCSDSCRAGVQHLQ---N----NIF--SIKTQKTGTIITV---ELP---DGFM---KLLAMT-PIGKE  253 (348)
Q Consensus       193 ~~~~~l~~~TG~R~~Ei~~L~~~did---~----~~i--~~~~~Kt~~~~~v---pl~---~~l~---~~l~~~-~~~~~  253 (348)
                      +.++.+.++-+||.+|+-.+...-++   +    ..+  .++.+||++++.|   |+.   +.|.   .+|... |....
T Consensus        28 ~flll~tf~NCcR~sDLkN~DP~TFeiv~nk~lG~ilra~V~ETKTr~~R~IyFfPv~g~~DpllaL~d~l~~~~P~~Kt  107 (272)
T 1flo_A           28 QFLFLATFINCGRFSDIKNVDPKSFKLVQNKYLGVIIQCLVTETKTSVSRHIYFFSARGRIDPLVYLDEFLRNSEPVLKR  107 (272)
T ss_dssp             HHHHHHHHHHTCCHHHHHTCEEEEEEEECCTTTSCEEEEEECSCTTSCCEEEEECCCSSSCCHHHHHHHHHHHCCCEECC
T ss_pred             HHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHEEEEEEEECCCCCCEEEEEEEECCCCCCCHHHHHHHHHCCCHHHHH
T ss_conf             99999998623542324568805677765201303545765224353012589973267667234498787147388887


Q ss_pred             ----CCCCC-CCCCCCCHHHH----HHHHHHHHHHC--CCCCC--CCHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHH--
Q ss_conf             ----21122-24577587789----99999999983--88998--140269999999984899889999964999899--
Q gi|254780134|r  254 ----TFFIN-NDKQKMNATQF----SIWFKAKATKA--GVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQ--  318 (348)
Q Consensus       254 ----~~~~~-~~g~~~~~~~~----~~~~~~~~~~a--gi~~~--~H~lRht~at~l~~~G~~~~~i~~~lGHss~~~--  318 (348)
                          .--.+ ...-.+-.+++    .+.+.+-....  +|++.  .|=-||.-+|.|...+.+ +.+.-+..||+...  
T Consensus       108 ~srts~~~s~~q~~Qllrdsl~~~YdrFi~k~~~~~iF~I~~GPKSHlGRHLM~SyLs~~~l~-~~~s~~GNWs~~reS~  186 (272)
T 1flo_A          108 VNRTGNSSSNKQEYQLLKDNLVRSYNKALKKNAPYSIFAIKNGPKSHIGRHLMTSFLSMKGLT-ELTNVVGNWSDKRASA  186 (272)
T ss_dssp             CCBTTCCSCCCCCEESSCTTHHHHHHHHHHHHCSSGGGGSTTCCSTTHHHHHHHHHHHHTTCT-TSHHHHHTCCCC----
T ss_pred             HHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHCCHH-HHHHHHCCCCHHHHHH
T ss_conf             504688754378899888888999999873179825998537966677889999886121568-8877734642014556


Q ss_pred             -H-HHHHHH
Q ss_conf             -9-999999
Q gi|254780134|r  319 -A-ETYTKG  325 (348)
Q Consensus       319 -t-~~Y~~~  325 (348)
                       + .+|+|.
T Consensus       187 VARs~Y~H~  195 (272)
T 1flo_A          187 VARTTYTHQ  195 (272)
T ss_dssp             ---CCSSCC
T ss_pred             HHHHEEEEE
T ss_conf             643100122


No 27 
>>1aih_A HP1 integrase; DNA integration, recombination; 2.50A {Bacteriophage HP1} (A:50-86)
Probab=81.07  E-value=0.34  Score=25.83  Aligned_cols=32  Identities=16%  Similarity=0.236  Sum_probs=26.2

Q ss_pred             EEEEECCCCCCCCCHHHHHHCCHHHHHHHHHH
Q ss_conf             14430233211331024331121689999964
Q gi|254780134|r  216 HLQNNIFSIKTQKTGTIITVELPDGFMKLLAM  247 (348)
Q Consensus       216 did~~~i~~~~~Kt~~~~~vpl~~~l~~~l~~  247 (348)
                      +|-.+.|++..+|+++.+.|||+++|.+.|..
T Consensus         2 Qi~~~kiTF~~TK~kKnRtVPIS~eL~~el~~   33 (37)
T 1aih_A            2 QVMPYKITFTNTKSKKNRTVPISDELFDMLPK   33 (37)
T ss_dssp             TEETTEEEEESSSSSCEEEEECCHHHHHHSCC
T ss_pred             CCCCCHHEECCCCCCCCHHHHHHHHHHHHHHH
T ss_conf             34310000013445431377668999999876


No 28 
>>1z1b_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 3.80A {Enterobacteria phage lambda} (A:1-59)
Probab=77.34  E-value=3.1  Score=19.59  Aligned_cols=35  Identities=20%  Similarity=0.348  Sum_probs=22.9

Q ss_pred             CCCCCCCEEEECCCCCEEEEEE-ECCCCEEECCCCCCHHH
Q ss_conf             8887981896228993899997-08956575588999889
Q gi|254780134|r    5 LRLPPFVTKERTRHGKIIYYFR-KGHGRRIRLPYPHESTF   43 (348)
Q Consensus         5 ~~~p~~v~~~~~r~G~~~~~~r-~~~~~~~~~~~~~~~~~   43 (348)
                      ..+||+++++++   + ||+|+ ...|+...++.....+.
T Consensus        10 ~~lp~NLy~k~~---k-Y~~Yr~P~tGk~~~LG~d~~~A~   45 (59)
T 1z1b_A           10 RDLPPNLYIRNN---G-YYCYRDPRTGKEFGLGRDRRIAI   45 (59)
T ss_dssp             CCCCTTEEEETT---T-EEEEECTTTCCEEEEESCHHHHH
T ss_pred             CCCCCCEEECCC---E-EEEEEECCCCEEEECCCCHHHHH
T ss_conf             899985897399---8-99999789997986889989999


No 29 
>>3jtz_A Integrase; four stranded beta-sheet, DNA binding protein; 1.30A {Yersinia pestis} (A:)
Probab=49.15  E-value=14  Score=15.37  Aligned_cols=44  Identities=16%  Similarity=0.058  Sum_probs=27.5

Q ss_pred             CCCCEEEECCCCCEEEEEEE---CCCCEEECCCCCCHHHHHHHHHHH
Q ss_conf             79818962289938999970---895657558899988999999998
Q gi|254780134|r    8 PPFVTKERTRHGKIIYYFRK---GHGRRIRLPYPHESTFIPAYMSAL   51 (348)
Q Consensus         8 p~~v~~~~~r~G~~~~~~r~---~~~~~~~~~~~~~~~~~~~~~~a~   51 (348)
                      -++++-....+|+..|+|+.   +..+++.++....-...+|...|.
T Consensus        23 ~~GL~l~v~~~G~k~~~~ry~~~Gk~~~~~lG~~p~~sl~~AR~~A~   69 (88)
T 3jtz_A           23 SHGLYLLVKPGGSRHWYLKYRISGKESRIALGAYPAISLSDARQQRE   69 (88)
T ss_dssp             STTEEEEECTTSCEEEEEEEEETTEEEEEEEEETTTSCHHHHHHHHH
T ss_pred             CCCEEEEEECCCCEEEEEEEEECCCEEEEEECCCCCCCHHHHHHHHH
T ss_conf             99659999658876899999863716899826999847999999999


No 30 
>>2k8e_A UPF0339 protein YEGP; protein structure initiative (PSI), northeast structural genomics consortium (NESG); NMR {Escherichia coli K12} (A:)
Probab=34.99  E-value=17  Score=14.79  Aligned_cols=39  Identities=10%  Similarity=0.175  Sum_probs=27.1

Q ss_pred             CCCCEEEECCCCCEEEEEEECCCCEEECCCCC-CHHHHHH
Q ss_conf             79818962289938999970895657558899-9889999
Q gi|254780134|r    8 PPFVTKERTRHGKIIYYFRKGHGRRIRLPYPH-ESTFIPA   46 (348)
Q Consensus         8 p~~v~~~~~r~G~~~~~~r~~~~~~~~~~~~~-~~~~~~~   46 (348)
                      ..+...++..+|.|+|++.-.+|..+-....+ +++.+..
T Consensus        18 ~~~Fei~~~~~g~~rfrL~a~ng~iia~S~~Y~s~~~a~~   57 (130)
T 2k8e_A           18 AGWFELSKSSDNQFRFVLKAGNGETILTSELYTSKTSAEK   57 (130)
T ss_dssp             CCEEEEEECTTCCEEEEEECTTSCEEEECCCBSSHHHHHH
T ss_pred             EEEEEEEECCCCCEEEEEECCCCCEEEECCCCCCHHHHHH
T ss_conf             4689999868997999999299999986799688899999


No 31 
>>2com_A Lysine-specific histone demethylase 1; swirm domain, LSD1, AOF2, KIAA0601, histone modulation, structural genomics, NPPSFA; NMR {Homo sapiens} (A:40-124)
Probab=33.48  E-value=24  Score=13.80  Aligned_cols=66  Identities=8%  Similarity=-0.012  Sum_probs=47.7

Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             788999999999999995699958969999999887515997899999999999996445520010566510
Q gi|254780134|r   89 VNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS  160 (348)
Q Consensus        89 ~~T~~~~~~~~~~~~~~~g~~~l~~it~~~i~~~~~~~~~~~~t~n~~~~~l~~~~~~a~~~~~i~~NP~~~  160 (348)
                      ..|...|...=+.++..|-.-|-..+|..++...+.....+      .+..+..++.|...+|+|.-.....
T Consensus         4 ~kt~~~Yl~iRN~Il~~w~~np~~~Lt~~~~~~~l~~~~~~------d~~~i~rv~~FL~~~G~INfg~~~~   69 (85)
T 2com_A            4 QQTQKVFLFIRNRTLQLWLDNPKIQLTFEATLQQLEAPYNS------DTVLVHRVHSYLERHGLINFGIYKR   69 (85)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSTTSCCCHHHHHHHSCTTTTT------CHHHHHHHHHHHHHTTSSSCSSSCC
T ss_pred             CCCHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHCCCCCCC------CHHHHHHHHHHHHHCCCEEECCCCC
T ss_conf             97889999999999999981987266299999764554334------6999999999999829331067777


No 32 
>>2nu8_B SCS-beta, succinyl-COA synthetase beta chain; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, rossmann fold; HET: COA; 2.15A {Escherichia coli} (B:1-18,B:104-237)
Probab=31.14  E-value=26  Score=13.56  Aligned_cols=53  Identities=13%  Similarity=0.010  Sum_probs=41.0

Q ss_pred             CHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHCCC
Q ss_conf             958969999999887515997899999999999996445520--01056651034
Q gi|254780134|r  110 DYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQE--YVAINPCLSVE  162 (348)
Q Consensus       110 ~l~~it~~~i~~~~~~~~~~~~t~n~~~~~l~~~~~~a~~~~--~i~~NP~~~v~  162 (348)
                      +...++...+.+....++..+.........|..+++-.++.+  +++-||....+
T Consensus        66 ~~~g~~~~~~r~~~~~lgl~~~~~~~~~~~i~~Ly~~f~e~da~llEINPL~~t~  120 (152)
T 2nu8_B           66 PLTGPMPYQGRELAFKLGLEGKLVQQFTKIFMGLATIFLERDLALIEINPLVITK  120 (152)
T ss_dssp             TTTBCCHHHHHHHHHHTTCCTHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEEEET
T ss_pred             CCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEHEECC
T ss_conf             5445666778999985268616788999999999999985564367620010337


No 33 
>>2fp4_B Succinyl-COA ligase [GDP-forming] beta-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} (B:1-18,B:110-243)
Probab=31.12  E-value=26  Score=13.55  Aligned_cols=53  Identities=13%  Similarity=0.107  Sum_probs=41.5

Q ss_pred             CHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHCCC
Q ss_conf             958969999999887515997899999999999996445520--01056651034
Q gi|254780134|r  110 DYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQE--YVAINPCLSVE  162 (348)
Q Consensus       110 ~l~~it~~~i~~~~~~~~~~~~t~n~~~~~l~~~~~~a~~~~--~i~~NP~~~v~  162 (348)
                      |...++...+.+....++......+.....+..+|+-.++.+  +++.||....+
T Consensus        67 p~~g~~~~~~~~i~~~lgl~~~~~~~~~~ii~~Ly~~F~e~Da~llEINPLv~t~  121 (152)
T 2fp4_B           67 IIEGIKDSQAQRMAENLGFLGPLQNQAADQIKKLYNLFLKIDATQVEVNPFGETP  121 (152)
T ss_dssp             TTTCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEEECT
T ss_pred             CCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECC
T ss_conf             3322353267899985078620046889999999999985681205432379938


No 34 
>>2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate- tRNA ligase 1, glurs 1, structural genomics; 2.34A {Thermotoga maritima} (A:389-481)
Probab=30.93  E-value=26  Score=13.53  Aligned_cols=50  Identities=14%  Similarity=0.223  Sum_probs=39.4

Q ss_pred             CCCCHHHHHHHHHHHHHHCCCCC--CCCHHHHHHHHHHHHCCCCHHHHHHHHCC
Q ss_conf             77587789999999999838899--81402699999999848998899999649
Q gi|254780134|r  262 QKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGW  313 (348)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~agi~~--~~H~lRht~at~l~~~G~~~~~i~~~lGH  313 (348)
                      -.++.+.+...++..++..|+..  -++-||-  |..-...|-++..++.+||-
T Consensus        29 ~~~~~e~i~~~i~~~~~~~~~k~~~~~~~lR~--altG~~~GP~l~~~l~ilGk   80 (93)
T 2o5r_A           29 VRWTXEEITPVFKKVLKQHGVKPKEFYXTLRR--VLTGREEGPELVNIIPLLGK   80 (93)
T ss_dssp             SCSSHHHHHHHHHHHHHHHTCCHHHHHHHHHH--HHTSSSCCSCHHHHHHHSCH
T ss_pred             CCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHH--HHHCCCCCCCHHHHHHHHCH
T ss_conf             99999999999999999959798899999999--99598919199999999099


No 35 
>>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} (C:)
Probab=30.41  E-value=27  Score=13.48  Aligned_cols=33  Identities=15%  Similarity=0.179  Sum_probs=25.7

Q ss_pred             HHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf             9999999848998899999649998999999999
Q gi|254780134|r  292 FSATISADAGATAHELMATYGWKTVDQAETYTKG  325 (348)
Q Consensus       292 t~at~l~~~G~~~~~i~~~lGHss~~~t~~Y~~~  325 (348)
                      -.+-.|.++|.++.+|+..+| -|..|.-+|...
T Consensus        12 ~~a~~l~~~G~s~~~iA~~~g-VSr~TiYr~l~~   44 (52)
T 1jko_C           12 EQISRLLEKGHPRQQLAIIFG-IGVSTLYRYFPA   44 (52)
T ss_dssp             HHHHHHHHTTCCHHHHHHTTS-CCHHHHHHHSCT
T ss_pred             HHHHHHHHCCCCHHHHHHHHC-CCHHHHHHHCCC
T ss_conf             999999987998999999989-799999998452


No 36 
>>2ysf_A E3 ubiquitin-protein ligase itchy homolog; AIP4, NAPP1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} (A:)
Probab=26.59  E-value=31  Score=13.05  Aligned_cols=25  Identities=20%  Similarity=-0.021  Sum_probs=20.4

Q ss_pred             CCCCCCCCCCCEEEECCCCCEEEEE
Q ss_conf             9988888798189622899389999
Q gi|254780134|r    1 MTPSLRLPPFVTKERTRHGKIIYYF   25 (348)
Q Consensus         1 m~p~~~~p~~v~~~~~r~G~~~~~~   25 (348)
                      |.+...||++=....+..|+.||.-
T Consensus         2 ~~~~~~LP~GWe~~~~~~G~~Yyin   26 (40)
T 2ysf_A            2 SSGSSGLPEGWEMRFTVDGIPYFVD   26 (40)
T ss_dssp             CCCCCCCCSSEEEEECTTCCEEEEE
T ss_pred             CCCCCCCCCCCEEEECCCCCEEEEE
T ss_conf             8887989989268898999999887


No 37 
>>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} (A:434-523)
Probab=25.88  E-value=32  Score=12.97  Aligned_cols=49  Identities=12%  Similarity=0.239  Sum_probs=38.7

Q ss_pred             CCCCHHHHHHHHHHHHHHCCCCC--CCCHHHHHHHHHHHHCCCCHHHHHHHHC
Q ss_conf             77587789999999999838899--8140269999999984899889999964
Q gi|254780134|r  262 QKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYG  312 (348)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~agi~~--~~H~lRht~at~l~~~G~~~~~i~~~lG  312 (348)
                      ..++.+.+...++..++..|++.  -++-||.  +..-...|.++..++.+||
T Consensus        28 ~~~~~e~i~~~i~~~~~~~~~k~~~~~~~lR~--altG~~~GP~l~~~l~lLG   78 (90)
T 1irx_A           28 EEFSVEEFNNILFEVAKRRGISSREWFSTLYR--LFIGKERGPRLASFLASLD   78 (90)
T ss_dssp             SSCCHHHHHHHHHHHHHHHTCBHHHHHHHHHH--HHHSSSSCSCHHHHHHTSC
T ss_pred             CCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHH--HHCCCCCCCCHHHHHHHHC
T ss_conf             89999999999999999959798999999999--9919798989899999959


No 38 
>>1vz0_A PARB, chromosome partitioning protein PARB; nuclear protein, chromosome segregation, DNA-binding, helix-turn-helix; 2.3A {Thermus thermophilus} (A:100-158)
Probab=25.81  E-value=32  Score=12.96  Aligned_cols=30  Identities=17%  Similarity=0.147  Sum_probs=22.3

Q ss_pred             HHHHHHHCCCCHHHHHHHHCCCCHHHHHHHH
Q ss_conf             9999998489988999996499989999999
Q gi|254780134|r  293 SATISADAGATAHELMATYGWKTVDQAETYT  323 (348)
Q Consensus       293 ~at~l~~~G~~~~~i~~~lGHss~~~t~~Y~  323 (348)
                      +...|.+.|.+..+|++.+| .|..+..+|.
T Consensus        27 a~~~l~~~g~s~~~iA~~~G-~s~~~V~~~L   56 (59)
T 1vz0_A           27 GYQALLEMGLTQEEVARRVG-KARSTVANAL   56 (59)
T ss_dssp             HHHHHHHTTCCHHHHHHHHT-CCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHCC-CCHHHHHHHH
T ss_conf             99989998872999998759-9999985677


No 39 
>>1tk7_A CG4244-PB; WW domain, notch, signaling protein; NMR {Drosophila melanogaster} (A:51-88)
Probab=25.54  E-value=33  Score=12.95  Aligned_cols=23  Identities=22%  Similarity=0.186  Sum_probs=18.2

Q ss_pred             CCCCCCCCCCEEEECCCCCEEEE
Q ss_conf             98888879818962289938999
Q gi|254780134|r    2 TPSLRLPPFVTKERTRHGKIIYY   24 (348)
Q Consensus         2 ~p~~~~p~~v~~~~~r~G~~~~~   24 (348)
                      .+...||++=....+..|++||.
T Consensus         2 ~~~~~LP~GWe~~~~~~G~~Yyi   24 (38)
T 1tk7_A            2 INEGPLPPGWEIRYTAAGERFFV   24 (38)
T ss_dssp             HHSCSSCSSCEEEEETTTEEEEE
T ss_pred             CCCCCCCCCEEEEECCCCCEEEE
T ss_conf             12245563307999888984889


No 40 
>>1r71_A Transcriptional repressor protein KORB; INCP, plasmid partitioning, protein-DNA complex, heilx-turn- helix motif, transcription factor; HET: BRU; 2.20A {Escherichia coli} (A:1-76)
Probab=25.54  E-value=33  Score=12.93  Aligned_cols=33  Identities=9%  Similarity=-0.043  Sum_probs=24.9

Q ss_pred             HHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHH
Q ss_conf             6999999998489988999996499989999999
Q gi|254780134|r  290 RKFSATISADAGATAHELMATYGWKTVDQAETYT  323 (348)
Q Consensus       290 Rht~at~l~~~G~~~~~i~~~lGHss~~~t~~Y~  323 (348)
                      +..+...|.+.|.+..+|++.+| .|.....+|.
T Consensus        41 ~a~~~~~l~~~g~s~~~iA~~lg-~s~~~V~~~l   73 (76)
T 1r71_A           41 IADFIGRELAKGKKKGDIAKEIG-KSPAFITQHV   73 (76)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHT-CCHHHHHHHH
T ss_pred             HHHHHHHHHHCCCCHHHHHHHHC-CCHHHHHHHH
T ss_conf             99999999983898999999988-8999999999


No 41 
>>1hmj_A RPB5, protein (subunit H); RNA polymerase, archaea; NMR {Methanocaldococcus jannaschii} (A:)
Probab=24.31  E-value=30  Score=13.22  Aligned_cols=47  Identities=13%  Similarity=0.041  Sum_probs=30.8

Q ss_pred             CCCCCCHHHHHHHHHHHCCCCHHHHHH----HHHHHCCCCCCCCCCCCCCE
Q ss_conf             421165234456666403780899998----98986188731002566401
Q gi|254780134|r  170 GIRPWTKEDMQQFKSFWSEGSQPRLAF----EFLLYSGLRCSDSCRAGVQH  216 (348)
Q Consensus       170 ~~~~~t~~ei~~~~~~~~~~~~~~~~~----~l~~~TG~R~~Ei~~L~~~d  216 (348)
                      .+.+++++|...+++.......+--.+    -++-|.|+..|+++.+....
T Consensus        11 kH~ils~eE~~~lL~~y~i~~~qLPkI~~~DPv~r~~G~k~GdVvkI~R~S   61 (78)
T 1hmj_A           11 KHEIVPKEEVEEILKRYNIKIQQLPKIYEDDPVIQEIGAKEGDVVRVIRKS   61 (78)
T ss_pred             CEEECCHHHHHHHHHHHCCCHHHCCEECCCCHHHHHHCCCCCEEEEEEECC
T ss_conf             818869999999999969998889924262987886477999089999728


No 42 
>>2ysh_A GAS-7, growth-arrest-specific protein 7; WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:)
Probab=23.17  E-value=36  Score=12.64  Aligned_cols=24  Identities=25%  Similarity=0.264  Sum_probs=19.7

Q ss_pred             CCCCCCCCCCCEEEECCCCCEEEE
Q ss_conf             998888879818962289938999
Q gi|254780134|r    1 MTPSLRLPPFVTKERTRHGKIIYY   24 (348)
Q Consensus         1 m~p~~~~p~~v~~~~~r~G~~~~~   24 (348)
                      |.....||++=....+..|++||+
T Consensus         2 ~~~~~~LP~gWe~~~~~~G~~YY~   25 (40)
T 2ysh_A            2 SSGSSGLPPGWQSYLSPQGRRYYV   25 (40)
T ss_dssp             CCCCSSCCTTCEEEECTTSCEEEE
T ss_pred             CCCCCCCCCCCEEEECCCCCEEEE
T ss_conf             887688997847989899999989


No 43 
>>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} (A:369-468)
Probab=22.99  E-value=37  Score=12.62  Aligned_cols=50  Identities=18%  Similarity=0.223  Sum_probs=39.8

Q ss_pred             CCCCHHHHHHHHHHHHHHCCCCC--CCCHHHHHHHHHHHHCCCCHHHHHHHHCC
Q ss_conf             77587789999999999838899--81402699999999848998899999649
Q gi|254780134|r  262 QKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGW  313 (348)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~agi~~--~~H~lRht~at~l~~~G~~~~~i~~~lGH  313 (348)
                      ..++.+.+...++...+..|+..  -+|-||-  |..-...|-++..++.+||-
T Consensus        37 ~~~~~~~i~~~i~~i~~~~~~k~~~~~~~LR~--altG~~~GP~l~~~~~~lGk   88 (100)
T 1j09_A           37 EEWTEAALEALLRGFAAEKGVKLGQVAQPLRA--ALTGSLETPGLFEILALLGK   88 (100)
T ss_dssp             CCCSHHHHHHHHHHHHHHHTSCHHHHHHHHHH--HHHSCSCCSCHHHHHHHTCH
T ss_pred             CCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHH--HHHCCCCCCCHHHHHHHCCH
T ss_conf             87999999999999999959899999999999--99498939499999998098


No 44 
>>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium} (A:)
Probab=22.34  E-value=38  Score=12.53  Aligned_cols=37  Identities=19%  Similarity=0.141  Sum_probs=28.3

Q ss_pred             HHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf             69999999984899889999964999899999999998
Q gi|254780134|r  290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD  327 (348)
Q Consensus       290 Rht~at~l~~~G~~~~~i~~~lGHss~~~t~~Y~~~~~  327 (348)
                      |-.-.-.+.-.|.+..+|+..|| -|..|+..|.+.+-
T Consensus         2 RE~evl~~~~~G~s~~eIA~~l~-iS~~TV~~~~~~i~   38 (61)
T 2jpc_A            2 RERQVLKLIDEGYTNHGISEKLH-ISIKTVETHRMNMM   38 (61)
T ss_dssp             HHHHHHHHHHTSCCSHHHHHHTC-SCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCCHHHHHHHHC-CCHHHHHHHHHHHH
T ss_conf             79999999982799999998969-88999999999999


No 45 
>>1ymz_A CC45; artificial protein, computational design, unknown function; NMR {Synthetic} (A:)
Probab=21.28  E-value=40  Score=12.40  Aligned_cols=25  Identities=28%  Similarity=0.473  Sum_probs=19.4

Q ss_pred             CCCCCCCCCCCEEEECCCCCEEEEE
Q ss_conf             9988888798189622899389999
Q gi|254780134|r    1 MTPSLRLPPFVTKERTRHGKIIYYF   25 (348)
Q Consensus         1 m~p~~~~p~~v~~~~~r~G~~~~~~   25 (348)
                      |.....||++=....+..|++||+-
T Consensus         3 ~~~~~~LP~GWe~~~~~~G~~YYin   27 (43)
T 1ymz_A            3 HGRSMPLPPGWERRTDVEGKVYYFN   27 (43)
T ss_dssp             ----CCCCSSEEEEECTTSCEEEEE
T ss_pred             CCCCCCCCCCCEEEECCCCCEEEEE
T ss_conf             8868988998789798999999897


No 46 
>>2auw_A Hypothetical protein NE0471; alpha-beta structure, structural genomics, PSI, protein structure initiative; 1.85A {Nitrosomonas europaea} (A:90-170)
Probab=20.73  E-value=41  Score=12.32  Aligned_cols=32  Identities=6%  Similarity=0.024  Sum_probs=18.8

Q ss_pred             HHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHH
Q ss_conf             999999984899889999964999899999999
Q gi|254780134|r  292 FSATISADAGATAHELMATYGWKTVDQAETYTK  324 (348)
Q Consensus       292 t~at~l~~~G~~~~~i~~~lGHss~~~t~~Y~~  324 (348)
                      .|..++...|.+..+.++.|| -+-.|...|-.
T Consensus         5 ~F~~W~~r~gLsl~~AAeALG-isrRmi~YY~~   36 (81)
T 2auw_A            5 XFGDWXHRNNLSLTTAAEALG-ISRRXVSYYRT   36 (81)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHT-SCHHHHHHHHT
T ss_pred             HHHHHHHHCCCCHHHHHHHHC-CCHHHHHHHHC
T ss_conf             999999985999999999949-99999999977


No 47 
>>3c57_A Two component transcriptional regulatory protein DEVR; response regulator, two-component regulatory system, DNA- binding protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A (A:)
Probab=20.64  E-value=41  Score=12.31  Aligned_cols=36  Identities=8%  Similarity=0.020  Sum_probs=24.4

Q ss_pred             HHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf             6999999998489988999996499989999999999
Q gi|254780134|r  290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGA  326 (348)
Q Consensus       290 Rht~at~l~~~G~~~~~i~~~lGHss~~~t~~Y~~~~  326 (348)
                      |-.-.-.+.-.|.+..+|+..|| -|..|+..|.+.+
T Consensus        31 rE~~vl~ll~~G~s~~eIA~~L~-iS~~TV~~~~~~i   66 (95)
T 3c57_A           31 QERTLLGLLSEGLTNKQIADRMF-LAEKTVKNYVSRL   66 (95)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHT-CCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCCHHHHHHHHC-CCHHHHHHHHHHH
T ss_conf             99999999991798799848856-6888999999999


Done!