HHsearch results for GI: 254780134 and protein with PDBid: 1ae9_A
>1ae9_A Lambda integrase; DNA recombination, site-specific recombination; 1.90A {Enterobacteria phage lambda} SCOP: d.163.1.1
Probab=99.84 E-value=7.3e-21 Score=152.72 Aligned_cols=152 Identities=18% Similarity=0.271 Sum_probs=120.7
Q ss_pred CCCCHHHHHHHHHHHCCC-CHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCHHHHHHCCHHHHHHH------
Q ss_conf 116523445666640378-0899998989861887310025664014430233211331024331121689999------
Q gi|254780134|r 172 RPWTKEDMQQFKSFWSEG-SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL------ 244 (348)
Q Consensus 172 ~~~t~~ei~~~~~~~~~~-~~~~~~~~l~~~TG~R~~Ei~~L~~~did~~~i~~~~~Kt~~~~~vpl~~~l~~~------ 244 (348)
.++|.||+.+|+++++.. ...+++|.|+++||||.+|+++|+|+||+++...+...|++....+|+.+.....
T Consensus 2 ~~lt~eE~~~l~~~~~~~~~~~~~~~~l~~~TG~R~~E~~~L~~~di~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~ 81 (179)
T 1ae9_A 2 SRLTADEYLKIYQAAESSPCWLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAIPTALHIDALGISMKE 81 (179)
T ss_dssp CCCCHHHHHHHHHHGGGSCHHHHHHHHHHHHHCCCHHHHHHCBGGGEETTEEEEECTTTCCEEEEETTCEEGGGTEEHHH
T ss_pred CCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCEEEEEECCHHHHHHHHHHHH
T ss_conf 99999999999998756889999999999997575999983620103340147874255303455466889999999988
Q ss_pred -HHH--HCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC-----CCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCCH
Q ss_conf -964--201332211222457758778999999999983889-----981402699999999848998899999649998
Q gi|254780134|r 245 -LAM--TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-----KSAHGVRKFSATISADAGATAHELMATYGWKTV 316 (348)
Q Consensus 245 -l~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~agi~-----~~~H~lRht~at~l~~~G~~~~~i~~~lGHss~ 316 (348)
... .......++....+.+....+....+..+++.++.. .++|++||++++. +++|+++.+||++|||+|.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~g~~~~~i~~~~GH~s~ 160 (179)
T 1ae9_A 82 TLDKCKEILGGETIIASTRREPLSSGTVSRYFMRARKASGLSFEGDPPTFHELRSLSARL-YEKQISDKFAQHLLGHKSD 160 (179)
T ss_dssp HHHHHHHHTCCSBSSCCTTSCCCCHHHHHHHHHHHHHHHTCCCSSSCCCTTHHHHHHHHH-HHHHTCHHHHHHHHTC---
T ss_pred HHHHHCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-HHCCCCHHHHHHHHCCCCH
T ss_conf 775311357764111035777544420478999999998523565401487899999999-9959999999998389999
Q ss_pred HHHHHHHH
Q ss_conf 99999999
Q gi|254780134|r 317 DQAETYTK 324 (348)
Q Consensus 317 ~~t~~Y~~ 324 (348)
+||++|.+
T Consensus 161 ~~t~~Y~~ 168 (179)
T 1ae9_A 161 TMASQFRD 168 (179)
T ss_dssp -----CEE
T ss_pred HHHHHHHH
T ss_conf 99999985