HHsearch results for GI: 254780134 and protein with PDBid: 1aih_A
>1aih_A HP1 integrase; DNA integration, recombination; 2.50A {Haemophilus phage HP1} SCOP: d.163.1.1
Probab=99.90 E-value=2.6e-24 Score=175.17 Aligned_cols=146 Identities=15% Similarity=0.145 Sum_probs=114.0
Q ss_pred CCCCCCHHHHHHHHHHHCC--CCHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCHHHHHHCCHHHHHHHHHH
Q ss_conf 4211652344566664037--80899998989861887310025664014430233211331024331121689999964
Q gi|254780134|r 170 GIRPWTKEDMQQFKSFWSE--GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM 247 (348)
Q Consensus 170 ~~~~~t~~ei~~~~~~~~~--~~~~~~~~~l~~~TG~R~~Ei~~L~~~did~~~i~~~~~Kt~~~~~vpl~~~l~~~l~~ 247 (348)
+...+++||+.+|++.+.. ....++++.|+++||||++|+++|+|+|||++.+.+...|+++.+.|||++.+.++|..
T Consensus 3 ~~~~Ls~eEi~~ll~~~~~~~~~~~~~~i~~~~~tG~R~~E~~~L~~~dI~~~~~~~~~~K~~~~r~vpl~~~~~~~l~~ 82 (170)
T 1aih_A 3 ELAFLYERDIYRLLAECDNSRNPDLGLIVRICLATGARWSEAETLTQSQVMPYKITFTNTKSKKNRTVPISDELFDMLPK 82 (170)
T ss_dssp CCCCCCHHHHHHHHHHHTTSSSTTHHHHHHHHHHHCCCHHHHHTCBTTTEETTEEEEESSSSSCEEEEECCHHHHHHSCC
T ss_pred CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCCEEEEECCCCCEEEECCHHHHHHHHHH
T ss_conf 34689999999999986565897799999999997856999985864104665125663256620362647999999998
Q ss_pred HCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC--CCCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 20133221122245775877899999999998388--9981402699999999848998899999649998999999999
Q gi|254780134|r 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 (348)
Q Consensus 248 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~agi--~~~~H~lRht~at~l~~~G~~~~~i~~~lGHss~~~t~~Y~~~ 325 (348)
.. ..+| +.....+...+.+ ...++ ..++|+|||||||.+.++|+++.+|+.+|||+|..||++|++.
T Consensus 83 ~~---~~~~------~~~~~~~~~~~~~--~~~~~~~~~~~H~lRht~at~l~~~g~~~~~i~~~lGH~s~~~t~~Y~~~ 151 (170)
T 1aih_A 83 KR---GRLF------NDAYESFENAVLR--AEIELPKGQLTHVLRHTFASHFMMNGGNILVLKEILGHSTIEMTMRYAHF 151 (170)
T ss_dssp CS---SBSS------CCCHHHHHHHHHH--TTCCCCTTCTTTHHHHHHHHHHHHTTCCHHHHHHHHTCSSHHHHGGGGGG
T ss_pred HC---CCCC------CCCHHHHHHHHHH--HHHCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHCC
T ss_conf 42---7766------6204678999988--86236876321301648999999869979999998389989999998877
Q ss_pred H
Q ss_conf 9
Q gi|254780134|r 326 A 326 (348)
Q Consensus 326 ~ 326 (348)
.
T Consensus 152 ~ 152 (170)
T 1aih_A 152 A 152 (170)
T ss_dssp S
T ss_pred C
T ss_conf 9