HHsearch results for GI: 254780134 and protein with PDBid: 1aih_A

>1aih_A HP1 integrase; DNA integration, recombination; 2.50A {Haemophilus phage HP1} SCOP: d.163.1.1
Probab=99.90  E-value=2.6e-24  Score=175.17  Aligned_cols=146  Identities=15%  Similarity=0.145  Sum_probs=114.0

Q ss_pred             CCCCCCHHHHHHHHHHHCC--CCHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCHHHHHHCCHHHHHHHHHH
Q ss_conf             4211652344566664037--80899998989861887310025664014430233211331024331121689999964
Q gi|254780134|r  170 GIRPWTKEDMQQFKSFWSE--GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM  247 (348)
Q Consensus       170 ~~~~~t~~ei~~~~~~~~~--~~~~~~~~~l~~~TG~R~~Ei~~L~~~did~~~i~~~~~Kt~~~~~vpl~~~l~~~l~~  247 (348)
                      +...+++||+.+|++.+..  ....++++.|+++||||++|+++|+|+|||++.+.+...|+++.+.|||++.+.++|..
T Consensus         3 ~~~~Ls~eEi~~ll~~~~~~~~~~~~~~i~~~~~tG~R~~E~~~L~~~dI~~~~~~~~~~K~~~~r~vpl~~~~~~~l~~   82 (170)
T 1aih_A            3 ELAFLYERDIYRLLAECDNSRNPDLGLIVRICLATGARWSEAETLTQSQVMPYKITFTNTKSKKNRTVPISDELFDMLPK   82 (170)
T ss_dssp             CCCCCCHHHHHHHHHHHTTSSSTTHHHHHHHHHHHCCCHHHHHTCBTTTEETTEEEEESSSSSCEEEEECCHHHHHHSCC
T ss_pred             CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCCEEEEECCCCCEEEECCHHHHHHHHHH
T ss_conf             34689999999999986565897799999999997856999985864104665125663256620362647999999998


Q ss_pred             HCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC--CCCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf             20133221122245775877899999999998388--9981402699999999848998899999649998999999999
Q gi|254780134|r  248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG  325 (348)
Q Consensus       248 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~agi--~~~~H~lRht~at~l~~~G~~~~~i~~~lGHss~~~t~~Y~~~  325 (348)
                      ..   ..+|      +.....+...+.+  ...++  ..++|+|||||||.+.++|+++.+|+.+|||+|..||++|++.
T Consensus        83 ~~---~~~~------~~~~~~~~~~~~~--~~~~~~~~~~~H~lRht~at~l~~~g~~~~~i~~~lGH~s~~~t~~Y~~~  151 (170)
T 1aih_A           83 KR---GRLF------NDAYESFENAVLR--AEIELPKGQLTHVLRHTFASHFMMNGGNILVLKEILGHSTIEMTMRYAHF  151 (170)
T ss_dssp             CS---SBSS------CCCHHHHHHHHHH--TTCCCCTTCTTTHHHHHHHHHHHHTTCCHHHHHHHHTCSSHHHHGGGGGG
T ss_pred             HC---CCCC------CCCHHHHHHHHHH--HHHCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHCC
T ss_conf             42---7766------6204678999988--86236876321301648999999869979999998389989999998877


Q ss_pred             H
Q ss_conf             9
Q gi|254780134|r  326 A  326 (348)
Q Consensus       326 ~  326 (348)
                      .
T Consensus       152 ~  152 (170)
T 1aih_A          152 A  152 (170)
T ss_dssp             S
T ss_pred             C
T ss_conf             9