HHsearch results for GI: 254780134 and protein with PDBid: 1z19_A
>1z19_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 2.80A {Enterobacteria phage lambda} PDB: 1p7d_A*
Probab=100.00 E-value=1.8e-40 Score=280.27 Aligned_cols=255 Identities=19% Similarity=0.235 Sum_probs=217.3
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHH
Q ss_conf 87899999999835543569788999999999999995699958969999999887515--9978999999999999964
Q gi|254780134|r 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK--HTPSSAIQFLTSMRVLFKW 146 (348)
Q Consensus 69 ~Tl~~l~~~y~~~~~~~~l~~~T~~~~~~~~~~~~~~~g~~~l~~it~~~i~~~~~~~~--~~~~t~n~~~~~l~~~~~~ 146 (348)
+||.++++.|++....++++++|+.+|+..+++|.+.+|+.++.+|+..+|.+|++.+. .+++++|++++.|+++|+|
T Consensus 1 ~Tl~e~l~~y~~~~~~~~l~~~T~~~y~~~l~~~~~~~g~~~l~~it~~~i~~~~~~~~~~~~~~t~~~~~~~l~~~~~~ 80 (283)
T 1z19_A 1 MTLHSWLDRYEKILASRGIKQKTLINYMSKIKAIRRGLPDAPLEDITTKEIAAMLNGYIDEGKAASAKLIRSTLSDAFRE 80 (283)
T ss_dssp CBHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHSCSCBGGGCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf 92999999999999876999999999999999999997699968799999999999999858999999999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCC-HHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCC
Q ss_conf 45520010566510346432444421165234456666403780-89999898986188731002566401443023321
Q gi|254780134|r 147 AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS-QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK 225 (348)
Q Consensus 147 a~~~~~i~~NP~~~v~~~~~~~~~~~~~t~~ei~~~~~~~~~~~-~~~~~~~l~~~TG~R~~Ei~~L~~~did~~~i~~~ 225 (348)
|++.|+++.||+..++.++.+.. ...++.+|+.++++.+.... ..++++.|+++||||.+|+++|+|+||+++.+.+.
T Consensus 81 a~~~~~i~~np~~~~~~~~~~~~-~~~lt~~e~~~i~~~~~~~~~~~~~~~~l~~~tG~R~~Ei~~L~~~di~~~~~~i~ 159 (283)
T 1z19_A 81 AIAEGHITTNHVAATRAAKSKVR-RSRLTADEYLKIYQAAESSPCWLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYVE 159 (283)
T ss_dssp HHHTTSCSCCTTTTSCCCCCCCC-CCCCCHHHHHHHHHHGGGSCHHHHHHHHHHHHSCCCHHHHTTCBGGGEETTEEEEE
T ss_pred HHHCCCCCCCCHHHCCCCCCCCC-CCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHCCCHHHHCCCEEEEE
T ss_conf 99859865481765005534777-77688999999999871488899999999999787865575192999218804998
Q ss_pred CCCCHHHHHHCCH-------HHHHHHHHHHC--CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC-----CCCCHHHH
Q ss_conf 1331024331121-------68999996420--1332211222457758778999999999983889-----98140269
Q gi|254780134|r 226 TQKTGTIITVELP-------DGFMKLLAMTP--IGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-----KSAHGVRK 291 (348)
Q Consensus 226 ~~Kt~~~~~vpl~-------~~l~~~l~~~~--~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~agi~-----~~~H~lRh 291 (348)
..|++....+|+. ..+.+.+.... .....+|++..|.|++..+++..|+++++.+|++ .++|+|||
T Consensus 160 ~~K~~~~~~~p~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~lR~ 239 (283)
T 1z19_A 160 QSKTGVKIAIPTALHIDALGISMKETLDKCKEILGGETIIASTRREPLSSGTVSRYFMRARKASGLSFEGDPPTFHELRS 239 (283)
T ss_dssp CTTTCCEEEEETTCEETTTTEEHHHHHHHHHHHHCSSBSSCCTTSSCCCHHHHHHHHHHHHHHTTCCCSSSCCCGGGHHH
T ss_pred ECCCCCEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHH
T ss_conf 66888424610738789999988888875303577740232013244671579999999999808876799997285999
Q ss_pred HHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 9999999848998899999649998999999999
Q gi|254780134|r 292 FSATISADAGATAHELMATYGWKTVDQAETYTKG 325 (348)
Q Consensus 292 t~at~l~~~G~~~~~i~~~lGHss~~~t~~Y~~~ 325 (348)
+++ .+.++|+++..|+++|||+|..||++|.+.
T Consensus 240 ~~~-~l~~~g~~~~~i~~~lGH~~~~~t~~Y~~~ 272 (283)
T 1z19_A 240 LSA-RLYEKQISDKFAQHLLGHKSDTMASQYRDD 272 (283)
T ss_dssp HHH-HHHHHHTCHHHHHHHHTCSSSCC-------
T ss_pred HHH-HHHHCCCCHHHHHHHHCCCCHHHHHHHHHC
T ss_conf 999-999869899999998389988999998425