HHsearch results for GI: 254780134 and protein with PDBid: 2kj9_A

>2kj9_A Integrase; DNA_BRE_C superfamily, INTB, PSI-2, structural genomics, protein structure initiative; NMR {Pectobacterium atrosepticum}
Probab=99.37  E-value=1.5e-12  Score=98.77  Aligned_cols=100  Identities=13%  Similarity=0.220  Sum_probs=86.7

Q ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HHHHHHCCCCHHHCCHHHHHHHHHHHCC--CHHHHHHHHHHHHH
Q ss_conf             34487899999999835543569788999999999-9999956999589699999998875159--97899999999999
Q gi|254780134|r   66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH--TPSSAIQFLTSMRV  142 (348)
Q Consensus        66 ~~~~Tl~~l~~~y~~~~~~~~l~~~T~~~~~~~~~-~~~~~~g~~~l~~it~~~i~~~~~~~~~--~~~t~n~~~~~l~~  142 (348)
                      ....||++++++|+...  ...+++|...+...++ ++.|.||+.||.+|++.+|..+++.+..  ++.++++.++.|+.
T Consensus         8 ~~~~TF~~va~~W~e~k--~~~~~~t~~~~~~~l~~~i~P~~G~~~i~~It~~~i~~~l~~i~~~g~~~ta~r~~~~l~~   85 (118)
T 2kj9_A            8 NNTRAFKTVAKSWFATK--TTWSEDYQRSVWTRLETYLFPDIGNKDIAELDTGDLLVPIKKIEKLGYLEIAMRVKQYATA   85 (118)
T ss_dssp             SSCSBHHHHHHHHHHTC--CSSCHHHHHHHHHHHHHTSSTTGGGSBGGGCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HCCCCHHHHHHHHHHHC--CCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHCHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf             73467999999999886--8888879999999999788898588569995559999999999993588999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             9964455200105665103464324
Q gi|254780134|r  143 LFKWAVRQEYVAINPCLSVERPKRK  167 (348)
Q Consensus       143 ~~~~a~~~~~i~~NP~~~v~~~~~~  167 (348)
                      +|+||+..|+++.||+.+++....+
T Consensus        86 if~~Av~~g~i~~NP~~~i~~~l~k  110 (118)
T 2kj9_A           86 IMRYAVQQKMIRFNPAYDLEGAVQK  110 (118)
T ss_dssp             HHHHHHHTTSSSSCHHHHCCSCSSS
T ss_pred             HHHHHHHCCCCCCCCHHHHHHHCCC
T ss_conf             9999998788333858889874799