HHsearch results for GI: 254780134 and protein with PDBid: 2kj9_A
>2kj9_A Integrase; DNA_BRE_C superfamily, INTB, PSI-2, structural genomics, protein structure initiative; NMR {Pectobacterium atrosepticum}
Probab=99.37 E-value=1.5e-12 Score=98.77 Aligned_cols=100 Identities=13% Similarity=0.220 Sum_probs=86.7
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HHHHHHCCCCHHHCCHHHHHHHHHHHCC--CHHHHHHHHHHHHH
Q ss_conf 34487899999999835543569788999999999-9999956999589699999998875159--97899999999999
Q gi|254780134|r 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH--TPSSAIQFLTSMRV 142 (348)
Q Consensus 66 ~~~~Tl~~l~~~y~~~~~~~~l~~~T~~~~~~~~~-~~~~~~g~~~l~~it~~~i~~~~~~~~~--~~~t~n~~~~~l~~ 142 (348)
....||++++++|+... ...+++|...+...++ ++.|.||+.||.+|++.+|..+++.+.. ++.++++.++.|+.
T Consensus 8 ~~~~TF~~va~~W~e~k--~~~~~~t~~~~~~~l~~~i~P~~G~~~i~~It~~~i~~~l~~i~~~g~~~ta~r~~~~l~~ 85 (118)
T 2kj9_A 8 NNTRAFKTVAKSWFATK--TTWSEDYQRSVWTRLETYLFPDIGNKDIAELDTGDLLVPIKKIEKLGYLEIAMRVKQYATA 85 (118)
T ss_dssp SSCSBHHHHHHHHHHTC--CSSCHHHHHHHHHHHHHTSSTTGGGSBGGGCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HCCCCHHHHHHHHHHHC--CCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHCHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf 73467999999999886--8888879999999999788898588569995559999999999993588999999999999
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 9964455200105665103464324
Q gi|254780134|r 143 LFKWAVRQEYVAINPCLSVERPKRK 167 (348)
Q Consensus 143 ~~~~a~~~~~i~~NP~~~v~~~~~~ 167 (348)
+|+||+..|+++.||+.+++....+
T Consensus 86 if~~Av~~g~i~~NP~~~i~~~l~k 110 (118)
T 2kj9_A 86 IMRYAVQQKMIRFNPAYDLEGAVQK 110 (118)
T ss_dssp HHHHHHHTTSSSSCHHHHCCSCSSS
T ss_pred HHHHHHHCCCCCCCCHHHHHHHCCC
T ss_conf 9999998788333858889874799