HHsearch results for GI: 254780134 and protein with PDBid: 3lys_A

>3lys_A Prophage PI2 protein 01, integrase; helical N-terminal domain, structural genomics, PSI-2, protein structure initiative; 2.80A {Lactococcus lactis}
Probab=99.50  E-value=1.4e-13  Score=105.44  Aligned_cols=97  Identities=8%  Similarity=0.064  Sum_probs=88.8

Q ss_pred             CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHH
Q ss_conf             487899999999835543569788999999999999995699958969999999887515--997899999999999996
Q gi|254780134|r   68 PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK--HTPSSAIQFLTSMRVLFK  145 (348)
Q Consensus        68 ~~Tl~~l~~~y~~~~~~~~l~~~T~~~~~~~~~~~~~~~g~~~l~~it~~~i~~~~~~~~--~~~~t~n~~~~~l~~~~~  145 (348)
                      ..||.++++.|+.......++++|...|+..++++.+.||+.++.+|++.+|++|++.+.  .+++|++.+++.|+++|+
T Consensus         5 k~tl~d~~~~Wl~~~k~~~~~~~T~~~y~~~~~~i~~~~g~~~l~~It~~~i~~~~~~l~~~~s~~tv~~~~~~l~~~~~   84 (112)
T 3lys_A            5 KQEISEYFKDWMELYKKNAIDEMTYKGYEQTLKYLKTYMPNVLISEITASSYQRALNKFAETHAKASTKGFHTRVRASIQ   84 (112)
T ss_dssp             CSBHHHHHHHHHHHHTTTTSCHHHHHHHHHHHHHHHHHSSSCBTTTCCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
T ss_conf             07799999999999722889999999999999999999880802007999999999973246426899999999999999


Q ss_pred             HHHHHHHHHHHHHHCCCCC
Q ss_conf             4455200105665103464
Q gi|254780134|r  146 WAVRQEYVAINPCLSVERP  164 (348)
Q Consensus       146 ~a~~~~~i~~NP~~~v~~~  164 (348)
                      ||+.+|+|..||+.+|+..
T Consensus        85 ~Av~~g~I~~NP~~~v~i~  103 (112)
T 3lys_A           85 CLIEEGRLQKDFTTRAVVK  103 (112)
T ss_dssp             HHHHTTSCSSCTTSSTTCC
T ss_pred             HHHHCCCCCCCCCCCCEEC
T ss_conf             9998869030888888767