HHsearch results for GI: 254780134 and protein with PDBid: 3lys_A
>3lys_A Prophage PI2 protein 01, integrase; helical N-terminal domain, structural genomics, PSI-2, protein structure initiative; 2.80A {Lactococcus lactis}
Probab=99.50 E-value=1.4e-13 Score=105.44 Aligned_cols=97 Identities=8% Similarity=0.064 Sum_probs=88.8
Q ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHH
Q ss_conf 487899999999835543569788999999999999995699958969999999887515--997899999999999996
Q gi|254780134|r 68 PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK--HTPSSAIQFLTSMRVLFK 145 (348)
Q Consensus 68 ~~Tl~~l~~~y~~~~~~~~l~~~T~~~~~~~~~~~~~~~g~~~l~~it~~~i~~~~~~~~--~~~~t~n~~~~~l~~~~~ 145 (348)
..||.++++.|+.......++++|...|+..++++.+.||+.++.+|++.+|++|++.+. .+++|++.+++.|+++|+
T Consensus 5 k~tl~d~~~~Wl~~~k~~~~~~~T~~~y~~~~~~i~~~~g~~~l~~It~~~i~~~~~~l~~~~s~~tv~~~~~~l~~~~~ 84 (112)
T 3lys_A 5 KQEISEYFKDWMELYKKNAIDEMTYKGYEQTLKYLKTYMPNVLISEITASSYQRALNKFAETHAKASTKGFHTRVRASIQ 84 (112)
T ss_dssp CSBHHHHHHHHHHHHTTTTSCHHHHHHHHHHHHHHHHHSSSCBTTTCCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
T ss_conf 07799999999999722889999999999999999999880802007999999999973246426899999999999999
Q ss_pred HHHHHHHHHHHHHHCCCCC
Q ss_conf 4455200105665103464
Q gi|254780134|r 146 WAVRQEYVAINPCLSVERP 164 (348)
Q Consensus 146 ~a~~~~~i~~NP~~~v~~~ 164 (348)
||+.+|+|..||+.+|+..
T Consensus 85 ~Av~~g~I~~NP~~~v~i~ 103 (112)
T 3lys_A 85 CLIEEGRLQKDFTTRAVVK 103 (112)
T ss_dssp HHHHTTSCSSCTTSSTTCC
T ss_pred HHHHCCCCCCCCCCCCEEC
T ss_conf 9998869030888888767