HHsearch results for GI: 254780134 and protein with PDBid: 3m4a_A
>3m4a_A Putative type I topoisomerase; type IB, topib, protein-DNA complex, isomerase-DNA complex; HET: DNA; 1.65A {Deinococcus radiodurans} PDB: 2f4q_A*
Probab=96.06 E-value=0.014 Score=33.80 Aligned_cols=127 Identities=13% Similarity=0.160 Sum_probs=76.0
Q ss_pred HHHHHHHHCCCCCC-----------CCCCCCCCEE--EEECCCCC-CCCCHHHHHHCCH-HHHHHHHHHH---CCCCCCC
Q ss_conf 99898986188731-----------0025664014--43023321-1331024331121-6899999642---0133221
Q gi|254780134|r 194 LAFEFLLYSGLRCS-----------DSCRAGVQHL--QNNIFSIK-TQKTGTIITVELP-DGFMKLLAMT---PIGKETF 255 (348)
Q Consensus 194 ~~~~l~~~TG~R~~-----------Ei~~L~~~di--d~~~i~~~-~~Kt~~~~~vpl~-~~l~~~l~~~---~~~~~~~ 255 (348)
+++.|+-.|.+|+| -++.|+..|| +++.+.+. ..|.|....+-+. +.+...|... +......
T Consensus 126 ~~v~Lld~~~iRVGne~Y~~en~SyGlTTLr~~HV~i~~~~i~~~F~GK~Gv~~~~~i~d~~l~~~l~~l~~~~g~~lf~ 205 (346)
T 3m4a_A 126 LMTRLLHVARFRVGSDIYARQHKTYGLSTLRQRHVVVDGNTVTFRFKGKHGVSQHKATSDRTLAANMQKLLDLPGPWLFQ 205 (346)
T ss_dssp HHHHHHHHHCCCCCCHHHHHHHCCCCGGGCBGGGEEEETTEEEEEEECGGGCEEEEEECCHHHHHHHHHHHTSCSSBSCE
T ss_pred HHHHHHHHHCCCCCCCCCHHHCCCCCEEEEECCCEEEECCEEEEEEECCCCEEEEEEECCHHHHHHHHHHHHCCCCHHHH
T ss_conf 99999998433068821012149815002100335886896999997688738887746889999999998457815331
Q ss_pred CCCCC-C--CCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH-----CCC-------------CHHHHHHHHCCC
Q ss_conf 12224-5--77587789999999999838899814026999999998-----489-------------988999996499
Q gi|254780134|r 256 FINND-K--QKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISAD-----AGA-------------TAHELMATYGWK 314 (348)
Q Consensus 256 ~~~~~-g--~~~~~~~~~~~~~~~~~~agi~~~~H~lRht~at~l~~-----~G~-------------~~~~i~~~lGHs 314 (348)
|.... | .++++.-++..++..+. +.|..+||-..||.++. .+. .+.+++..|||+
T Consensus 206 ~~~~~~g~~~~v~s~dVN~YLk~~~g----~~TaKdFRTw~at~~~~~~L~~~~~~~s~~~~kk~i~~ai~~VA~~LgnT 281 (346)
T 3m4a_A 206 TVDAGGGERRRIHSTELNAYLREVIG----PFTAKDFRTWGGTLLAAEYLAQQGTESSERQAKKVLVDCVKFVADDLGNT 281 (346)
T ss_dssp EECCCC-CEEECCHHHHHHHHHHHHT----TSCHHHHHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHTSC
T ss_pred HCCCCCCCEECCCHHHHHHHHHHHCC----CCCHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 00156887101679999999998669----98731303435499999999836788998999999999999999984897
Q ss_pred CHHHHHHHHH
Q ss_conf 9899999999
Q gi|254780134|r 315 TVDQAETYTK 324 (348)
Q Consensus 315 s~~~t~~Y~~ 324 (348)
..-.-.-|++
T Consensus 282 paVcRksYI~ 291 (346)
T 3m4a_A 282 PAVTRGSYIC 291 (346)
T ss_dssp HHHHHHHTSC
T ss_pred HHHHHHHCCC
T ss_conf 5445564378