HHsearch results for GI: 254780134 and protein with PDBid: 3nrw_A
>3nrw_A Phage integrase/site-specific recombinase; alpha-helical domain, structural genomics, PSI-2, protein ST initiative; 1.70A {Haloarcula marismortui}
Probab=99.36 E-value=9.7e-12 Score=93.42 Aligned_cols=101 Identities=13% Similarity=0.089 Sum_probs=87.9
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH---CCCCHHHCCHHHHHHHHHHH---CCCHHHHHHHHHH
Q ss_conf 34487899999999835543569788999999999999995---69995896999999988751---5997899999999
Q gi|254780134|r 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR---KHTPSSAIQFLTS 139 (348)
Q Consensus 66 ~~~~Tl~~l~~~y~~~~~~~~l~~~T~~~~~~~~~~~~~~~---g~~~l~~it~~~i~~~~~~~---~~~~~t~n~~~~~ 139 (348)
....|+.++++.|++... .+++++|...|+..++.|...+ |...+.+|++.+|.+|+..+ +.++.|++.+++.
T Consensus 4 ~~~~t~~e~ie~yl~~~~-~~ls~~T~~~Y~~~l~~f~~~l~~~~~~~l~~it~~~l~~y~~~l~~~g~s~~Ti~~~~~~ 82 (117)
T 3nrw_A 4 RPSLSPREARDRYLAHRQ-TDAADASIKSFRYRLKHFVEWAEERDITAMRELTGWKLDEYETFRRGSDVSPATLNGEMQT 82 (117)
T ss_dssp CCCCCHHHHHHHHHHHHT-TTSCHHHHHHHHHHHHHHHHHHHHTTCCSGGGCCHHHHHHHHHHHHTSSCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf 999999999999999978-1868999999999999999999986337887688999999999987122268899699889
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 9999964455200105665103464324
Q gi|254780134|r 140 MRVLFKWAVRQEYVAINPCLSVERPKRK 167 (348)
Q Consensus 140 l~~~~~~a~~~~~i~~NP~~~v~~~~~~ 167 (348)
|++||+||++.|+|+.||+..|+.|+.-
T Consensus 83 lr~f~~~~~~~~~i~~np~~~V~~Pkv~ 110 (117)
T 3nrw_A 83 LKNWLEYLARIDVVDEDLPEKVHVPTIL 110 (117)
T ss_dssp HHHHHHHHHHTTSSCTTSGGGCCCC---
T ss_pred HHHHHHHHHHCCCCCCCHHHHCCCCCCC
T ss_conf 9999999999899675999978799812