HHSEARCH alignment of GI: 254780134 and SCOP domain: d1a0pa1

Alignment
>d1a0pa1 a.60.9.1 (A:3-100) Recombinase XerD {Escherichia coli [TaxId: 562]}
Probab=98.88  E-value=3.5e-09  Score=75.26  Aligned_cols=88  Identities=14%  Similarity=0.271  Sum_probs=73.6

Q ss_pred             HHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHC--CCCHHHCCHHHHHHHHHHHC---CCHHHHHHHHHHHHHHHHHH
Q ss_conf             99999983554-35697889999999999999956--99958969999999887515---99789999999999999644
Q gi|254780134|r   74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESRK---HTPSSAIQFLTSMRVLFKWA  147 (348)
Q Consensus        74 l~~~y~~~~~~-~~l~~~T~~~~~~~~~~~~~~~g--~~~l~~it~~~i~~~~~~~~---~~~~t~n~~~~~l~~~~~~a  147 (348)
                      .++.|+..... +++++.|+..|+..++.|...+.  +..+.+|+..+|..|+..+.   .+++|.++.++.|+.||+|+
T Consensus         5 ~ie~fl~~l~~erg~S~~Ti~aY~~dl~~f~~~l~~~~~~~~~i~~~~i~~yl~~l~~~g~s~~Ti~r~lsalr~ff~~l   84 (98)
T d1a0pa1           5 RIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGYKATSSARLLSAVRRLFQYL   84 (98)
T ss_dssp             HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHTSCCTTTCCHHHHHHHHHSCC-------CHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
T ss_conf             99999999998849599999999999999999887616441115589999999999852455105999999999999999


Q ss_pred             HHHHHHHHHHHHCC
Q ss_conf             55200105665103
Q gi|254780134|r  148 VRQEYVAINPCLSV  161 (348)
Q Consensus       148 ~~~~~i~~NP~~~v  161 (348)
                      .++|+++.||+..|
T Consensus        85 ~~~~~i~~nP~~~i   98 (98)
T d1a0pa1          85 YREKFREDDPSAHL   98 (98)
T ss_dssp             HHTTSSSSCTTSCC
T ss_pred             HHCCCCCCCCCCCC
T ss_conf             99789376833419


SCOP domain information

class: All alpha proteins
fold: SAM domain-like
superfamily: lambda integrase-like, N-terminal domain
family: lambda integrase-like, N-terminal domain
domain: Recombinase XerD
species: Escherichia coli [TaxId: 562]