HHSEARCH alignment of GI: 254780134 and SCOP domain: d1ae9a_

Alignment
>d1ae9a_ d.163.1.1 (A:) Integrase (Int) {Bacteriophage lambda [TaxId: 10710]}
Probab=99.85  E-value=6.4e-22  Score=158.06  Aligned_cols=152  Identities=16%  Similarity=0.242  Sum_probs=120.1

Q ss_pred             CCCCHHHHHHHHHHHCCCC-HHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCHHHHHHCCHHHHH-------H
Q ss_conf             1165234456666403780-8999989898618873100256640144302332113310243311216899-------9
Q gi|254780134|r  172 RPWTKEDMQQFKSFWSEGS-QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM-------K  243 (348)
Q Consensus       172 ~~~t~~ei~~~~~~~~~~~-~~~~~~~l~~~TG~R~~Ei~~L~~~did~~~i~~~~~Kt~~~~~vpl~~~l~-------~  243 (348)
                      .++|.||+.++++++.... ..++++.|+++||||.+|+++|+|+||+++...+...|++..+.+|+.+...       .
T Consensus         2 ~~lt~ee~~~l~~~~~~~~~~~~~~~~l~~~tG~R~~El~~L~~~di~~~~~~i~~~K~~~~~~~~~~~~~~~~~~~~~~   81 (179)
T d1ae9a_           2 SRLTADEYLKIYQAAESSPCWLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAIPTALHIDALGISMKE   81 (179)
T ss_dssp             CCCCHHHHHHHHHHGGGSCHHHHHHHHHHHHHCCCHHHHHHCBGGGEETTEEEEECTTTCCEEEEETTCEEGGGTEEHHH
T ss_pred             CCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCEEEEECCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf             98999999999998756889999999999996799876466620266301114641133332346674156778877655


Q ss_pred             HHHH--HCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC-----CCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCCH
Q ss_conf             9964--201332211222457758778999999999983889-----981402699999999848998899999649998
Q gi|254780134|r  244 LLAM--TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-----KSAHGVRKFSATISADAGATAHELMATYGWKTV  316 (348)
Q Consensus       244 ~l~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~agi~-----~~~H~lRht~at~l~~~G~~~~~i~~~lGHss~  316 (348)
                      ....  .......++....|.++....+...+..+.+.++..     .++|++||+ +|.++++|+++.+|+.+|||+|.
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~lR~~-~t~~~~~g~~~~~i~~~lGH~s~  160 (179)
T d1ae9a_          82 TLDKCKEILGGETIIASTRREPLSSGTVSRYFMRARKASGLSFEGDPPTFHELRSL-SARLYEKQISDKFAQHLLGHKSD  160 (179)
T ss_dssp             HHHHHHHHTCCSBSSCCTTSCCCCHHHHHHHHHHHHHHHTCCCSSSCCCTTHHHHH-HHHHHHHHTCHHHHHHHHTC---
T ss_pred             HHHHHCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHH-HHHHHHCCCCHHHHHHHHCCCCH
T ss_conf             44331135776521333047763345303466666531134433231037788888-88999849999999999589999


Q ss_pred             HHHHHHHH
Q ss_conf             99999999
Q gi|254780134|r  317 DQAETYTK  324 (348)
Q Consensus       317 ~~t~~Y~~  324 (348)
                      .||++|.+
T Consensus       161 ~~t~~Y~~  168 (179)
T d1ae9a_         161 TMASQFRD  168 (179)
T ss_dssp             -----CEE
T ss_pred             HHHHHHHH
T ss_conf             99999873


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: DNA breaking-rejoining enzymes
superfamily: DNA breaking-rejoining enzymes
family: Lambda integrase-like, catalytic core
domain: Integrase (Int)
species: Bacteriophage lambda [TaxId: 10710]