HHSEARCH alignment of GI: 254780134 and SCOP domain: d1f44a1

Alignment

Probab=97.31  E-value=0.00039  Score=42.42  Aligned_cols=78  Identities=6%  Similarity=-0.037  Sum_probs=57.5

Q ss_pred             HHHHHHHHHH-HCCCCHHHHHHHHHHHHHHHHHHC--CCCHHHCCHHHHHHHHHHH---CCCHHHHHHHHHHHHHHHHHH
Q ss_conf             9999998355-435697889999999999999956--9995896999999988751---599789999999999999644
Q gi|254780134|r   74 LISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESR---KHTPSSAIQFLTSMRVLFKWA  147 (348)
Q Consensus        74 l~~~y~~~~~-~~~l~~~T~~~~~~~~~~~~~~~g--~~~l~~it~~~i~~~~~~~---~~~~~t~n~~~~~l~~~~~~a  147 (348)
                      +.+.|+...+ -+.++++|...|...++.|..++.  ...+-.+++.+|..|+..+   +.+++|+++.++.|+.++.++
T Consensus         4 ~~~~~~~~l~~~~~~S~nT~~aY~~dl~~f~~w~~~~~~~~l~~~~~~v~~yl~~l~~~g~s~sTi~R~lsair~f~r~~   83 (110)
T d1f44a1           4 VRKNLMDMFRDRQAFSEHTWKMLLSVCRSWAAWCKLNNRKWFPAEPEDVRDYLLYLQARGLAVKTIQQHLGQLNMLHRRS   83 (110)
T ss_dssp             THHHHHSCCSCGGGSCHHHHHHHHHHHHHHHHHHHHTTCCTTTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHC
T ss_conf             99999999999865389899999999999999886511234623453789999999863888408999999999999986


Q ss_pred             HHHH
Q ss_conf             5520
Q gi|254780134|r  148 VRQE  151 (348)
Q Consensus       148 ~~~~  151 (348)
                      -...
T Consensus        84 g~~~   87 (110)
T d1f44a1          84 GLPR   87 (110)
T ss_dssp             TCCC
T ss_pred             CCCC
T ss_conf             9999

SCOP domain information

class: All alpha proteins
fold: SAM domain-like
superfamily: lambda integrase-like, N-terminal domain
family: lambda integrase-like, N-terminal domain
domain: Cre recombinase
species: Bacteriophage P1 [TaxId: 10678]