BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254780134|ref|YP_003064547.1| phage-related integrase/recombinase [Candidatus Liberibacter asiaticus str. psy62] (348 letters) Database: nr 13,984,884 sequences; 4,792,584,752 total letters Searching..................................................done Results from round 1 >gi|254780134|ref|YP_003064547.1| phage-related integrase/recombinase [Candidatus Liberibacter asiaticus str. psy62] gi|254039811|gb|ACT56607.1| phage-related integrase/recombinase [Candidatus Liberibacter asiaticus str. psy62] gi|317120848|gb|ADV02669.1| phage-related integrase/recombinase [Candidatus Liberibacter asiaticus] Length = 348 Score = 724 bits (1870), Expect = 0.0, Method: Compositional matrix adjust. Identities = 348/348 (100%), Positives = 348/348 (100%) Query: 1 MTPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY 60 MTPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY Sbjct: 1 MTPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY 60 Query: 61 INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120 INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR Sbjct: 61 INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120 Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ Sbjct: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG Sbjct: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240 Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADA 300 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADA Sbjct: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADA 300 Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348 GATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP Sbjct: 301 GATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348 >gi|240850345|ref|YP_002971738.1| phage-related integrase/recombinase [Bartonella grahamii as4aup] gi|240267468|gb|ACS51056.1| phage-related integrase/recombinase [Bartonella grahamii as4aup] Length = 347 Score = 233 bits (593), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 129/341 (37%), Positives = 192/341 (56%), Gaps = 13/341 (3%) Query: 8 PPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHEST-FIPAYMSALTGSTPKREYINSPRK 66 PP + KE TRHGKII+Y R GHG+RIR+ + + F+ Y SAL + + + P+ Sbjct: 6 PPHLVKEVTRHGKIIWYVRIGHGKRIRIRGTYGTQEFVDNYKSALA----ELQGLILPKS 61 Query: 67 KPTTL-----KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121 K L WL+ +Y S HW SLA ++ E ++ G+ YR+I HI + Sbjct: 62 KTGKLVEGSFAWLLKQYFNSVHWHSLAKATKRQRELILMKVCDAIGNIPYREIKKSHITA 121 Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK-RKTEGIRPWTKEDMQ 180 GVE RK P++A FL ++ LF WA+ QE + NP L ++RP +G WT+ED++ Sbjct: 122 GVERRKEKPTAAQNFLKALNGLFNWAIDQELLENNPALGIKRPPLNNKDGFAVWTEEDVE 181 Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP-- 238 ++ WS GS R+ + LLY+GLR D+ R G + +++NI +KT+K+ V LP Sbjct: 182 KYYHHWSHGSHERVWIDVLLYTGLRRGDAVRIGWKDVKDNIIHLKTEKSKFQTDVFLPIL 241 Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISA 298 + L + PIG ETF + K+ F F+ AG+ KSAHG+RK +AT +A Sbjct: 242 PELAETLKIGPIGNETFICGKNGNKLVKESFGNLFREACNAAGIKKSAHGLRKLAATRAA 301 Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339 ++GAT +L A +GW + A YTK ADR RL I+ +++ Sbjct: 302 NSGATVSQLKAIFGWTDDNMASLYTKSADRKRLAIEAIKKL 342 >gi|323136183|ref|ZP_08071265.1| integrase family protein [Methylocystis sp. ATCC 49242] gi|322398257|gb|EFY00777.1| integrase family protein [Methylocystis sp. ATCC 49242] Length = 341 Score = 225 bits (573), Expect = 8e-57, Method: Compositional matrix adjust. Identities = 124/327 (37%), Positives = 190/327 (58%), Gaps = 5/327 (1%) Query: 8 PPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHEST-FIPAYMSALTGSTPKREYINSPRK 66 PP++ E +RHG+ ++YFRKG G R+RLP + S F AY +A+ G ++ + Sbjct: 6 PPYLHSEISRHGRRVWYFRKGKGPRVRLPDAYGSDDFWSAYHAAMAGEVAPKKPAGA--- 62 Query: 67 KPTTLKWLISEYR-KSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125 K +L+WLI +YR +S+HW LA+ +R E F +I +GD Y +T I G + Sbjct: 63 KSGSLRWLIDKYRAESSHWSQLALETRQRRERIFQAVIEAAGDKAYTAVTRAKIVEGRDR 122 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 R+ TPS+A FL + LF WA ++VA NPC V+ ++T+G RPWT+ D+++F++ Sbjct: 123 RRATPSAANHFLKARAGLFAWAFEADHVATNPCEGVKMLSQRTDGHRPWTEADIERFEAR 182 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245 W G++ RLA L+Y+GLR D + G QH+++ + S++T+KT T + + + +++ Sbjct: 183 WPVGTRERLALAILMYTGLRRGDVVKLGRQHVRDGVISLRTEKTNTPVHLPMLPALAEII 242 Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAH 305 +P G F + + A FS F AGV+ S HG+RK +AT +A+AGAT Sbjct: 243 DKSPTGDLNFIATKSGRPICADAFSAMFLCACRAAGVDASPHGLRKVAATRAANAGATVA 302 Query: 306 ELMATYGWKTVDQAETYTKGADRIRLG 332 EL A +GW A YTK ADR RL Sbjct: 303 ELEALFGWTGGQMASHYTKEADRARLA 329 >gi|319405810|emb|CBI79435.1| phage-related integrase/recombinase [Bartonella sp. AR 15-3] Length = 345 Score = 222 bits (565), Expect = 8e-56, Method: Compositional matrix adjust. Identities = 122/341 (35%), Positives = 192/341 (56%), Gaps = 13/341 (3%) Query: 8 PPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHEST-FIPAYMSALTGSTPKREYINSPRK 66 PP + KE TRHGK+I+Y R GHG+R+R+ + + FI Y A+ + + + P+ Sbjct: 6 PPHLVKEITRHGKVIWYVRIGHGQRVRIYGTYGAQEFIDNYKRAIA----QLQGLILPKS 61 Query: 67 KPTTL-----KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121 KP L WL+ +Y S +W SLA ++ E ++ G Y+ I KHI + Sbjct: 62 KPGKLVEGSFAWLLKQYFNSVNWYSLAKTTQRQKELILMKVCDSVGSIPYKAINKKHIIA 121 Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT-EGIRPWTKEDMQ 180 GVE RK TP+SA FL ++ LF WA+ Q + NP L+++RP K +G WT+ED++ Sbjct: 122 GVERRKETPASARNFLKALNGLFTWAIEQNLLDENPTLNIKRPPLKNKDGFPAWTEEDIE 181 Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP-- 238 ++ W G+ R+ + +LY+GLR D+ R G + +++NI +KT+K+ V LP Sbjct: 182 KYYKQWPHGTHERVWIDVILYTGLRRGDAMRIGWKDVKDNIIHLKTEKSKFQTDVFLPIL 241 Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISA 298 + L + PIG ETF +K+ F F+ A + KSAHG+RK +AT +A Sbjct: 242 PELAETLKIGPIGDETFICGKGNKKLTKESFGNLFREACNTASIKKSAHGLRKLAATRAA 301 Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339 ++GAT +L A +GW + A YTK ADR +L +++ +++ Sbjct: 302 NSGATVSQLKAIFGWTNDNMASLYTKSADRKKLALESIKKL 342 >gi|163868166|ref|YP_001609374.1| phage-related integrase/recombinase [Bartonella tribocorum CIP 105476] gi|161017821|emb|CAK01379.1| phage-related integrase/recombinase [Bartonella tribocorum CIP 105476] Length = 345 Score = 220 bits (560), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 125/341 (36%), Positives = 190/341 (55%), Gaps = 13/341 (3%) Query: 8 PPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHEST-FIPAYMSALTGSTPKREYINSPRK 66 PP++ KE TRH KII+Y R GHG+RIR+ + + F+ Y SAL + + I P+ Sbjct: 6 PPYLLKEVTRHNKIIWYVRIGHGKRIRIRGTYGTQEFVDNYKSALA----ELQGIIPPKP 61 Query: 67 KPTTL-----KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121 K L WL+ +Y S+ W LA ++ E ++ G+ Y+ I KHI + Sbjct: 62 KTGKLIEGSFAWLLKQYFNSSDWYCLAKATKRQKELILMKVCDSIGNIPYQAIEKKHIVA 121 Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK-RKTEGIRPWTKEDMQ 180 GVE RK TP+ A FL ++ LF WA+ Q + NP + V+RP +G WT++D++ Sbjct: 122 GVERRKETPAMARNFLKALNGLFNWAIDQGLLESNPTVGVKRPALNNKDGFAVWTEDDVE 181 Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP-- 238 ++ WS G+ R+ + LLY+GLR D+ R G +++++NI +KT+K+ V LP Sbjct: 182 KYYQRWSHGTHERVWIDVLLYTGLRRGDAVRIGWKNVKDNIIHLKTEKSKYQTDVFLPIL 241 Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISA 298 + L + PIG ETF + QK F F+ AG+ KSAHG+RK +AT +A Sbjct: 242 PELAETLKIGPIGNETFICSKTNQKFIKESFGNAFRDACNAAGIKKSAHGLRKLAATRAA 301 Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339 ++GAT +L A +GW A YTK ADR RL ++ +++ Sbjct: 302 NSGATVSQLKAIFGWTEDQMASLYTKSADRKRLALEAIKKL 342 >gi|85716638|ref|ZP_01047608.1| Integrase /recombinase [Nitrobacter sp. Nb-311A] gi|85696639|gb|EAQ34527.1| Integrase /recombinase [Nitrobacter sp. Nb-311A] Length = 371 Score = 210 bits (535), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 119/334 (35%), Positives = 177/334 (52%), Gaps = 11/334 (3%) Query: 6 RLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHEST-FIPAYMSALTGSTPKREYINSP 64 R PP++ ERTRHG ++Y R+ HG RIRL + S F Y +AL + + S Sbjct: 4 RRPPYLHSERTRHGARVWYVRRHHGGRIRLRADYGSAAFWQEYRAALDAAPA---LVASA 60 Query: 65 RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124 K TLKW + YR S+ W +L++ +R E+ F ++I G +I IR G E Sbjct: 61 IGKSGTLKWALDRYRASSAWATLSLATRRQRENIFRRVIETGGKTPLTEIDDDVIRDGRE 120 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE--RPKRKTEGIRPWTKEDMQQF 182 R TP A F+ +MR W V ++ + NP V+ +G WT+ ++ +F Sbjct: 121 RRAATPHQANSFIKAMRAFCAWCVEEKLMTKNPTSGVKLLTGPNDADGFHTWTQAELDRF 180 Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK-----TGTIITVEL 237 ++ W G++ RLAF+ LLY+GLR D+ R G QH+++ + SI+T+K G ++ + + Sbjct: 181 EARWKVGTRERLAFDVLLYTGLRRGDAVRVGRQHVKDGVISIRTEKHARGKAGELVAIPI 240 Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATIS 297 LA TP G+ F IN Q F WF+ +A SAHG+RK AT + Sbjct: 241 LAPLAASLAATPTGELEFLINERGQPWRKESFGNWFRDVCREANCPGSAHGLRKAGATRA 300 Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 A+ GA+ +LMA +GW T A+ YT+ ADR RL Sbjct: 301 AEKGASERQLMAIFGWTTGKMAQHYTRSADRARL 334 >gi|49475466|ref|YP_033507.1| integrase /recombinase [Bartonella henselae str. Houston-1] gi|49238272|emb|CAF27486.1| Integrase /recombinase [Bartonella henselae str. Houston-1] Length = 345 Score = 208 bits (529), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 121/341 (35%), Positives = 190/341 (55%), Gaps = 9/341 (2%) Query: 6 RLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHEST-FIPAYMSAL---TGSTPKREYI 61 R PP + KE TRHGK+++Y R GHG R R+ + + F+ +Y A+ TPKR + Sbjct: 4 RRPPHLVKETTRHGKVVWYVRIGHGPRYRIEGTYGTQEFVDSYTLAIKQAQNGTPKR--M 61 Query: 62 NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121 R + WL+ +Y +S W + + +++ + + + G+ Y+ I +HI Sbjct: 62 TQTRLTEGSFDWLLHQYLQSMQWHNQSESTKKVKYRILNNVSKHIGNHAYKSIEKRHILD 121 Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR-KTEGIRPWTKEDMQ 180 V+ R+ TP++A FLTS+ LF WAV + NP L+++ PK +EG++PW +ED+ Sbjct: 122 AVDRRRATPAAAKHFLTSLNGLFNWAVDNALLNRNPALNIKAPKSLNSEGLQPWLEEDID 181 Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP-- 238 ++ WS GS R+ + LLY+GLR D+ R G + +++NI +KT+K+ V LP Sbjct: 182 KYYHHWSHGSHERVWIDVLLYTGLRRGDAVRIGWKDVKDNIIHLKTEKSQFKTDVFLPIL 241 Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISA 298 + L + PIG ETF K+ F F+ AG+ KSAHG+RK +AT +A Sbjct: 242 PELTETLQIGPIGDETFICGKSGNKLVKESFGNLFREACNAAGIKKSAHGLRKLAATRAA 301 Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339 +AGAT ++ A +GW A YTK ADR RL I+ +++ Sbjct: 302 NAGATVSQMKALFGWTEDKMASLYTKTADRKRLAIEAIKKL 342 >gi|307942454|ref|ZP_07657805.1| integrase family protein [Roseibium sp. TrichSKD4] gi|307774740|gb|EFO33950.1| integrase family protein [Roseibium sp. TrichSKD4] Length = 356 Score = 206 bits (524), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 122/340 (35%), Positives = 184/340 (54%), Gaps = 14/340 (4%) Query: 3 PSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHE----STFIPAYMSALTGSTPKR 58 P RLP V E++RHG++ Y+FR GHG RIRLP + S F+ AY SAL G+ P Sbjct: 2 PKSRLPHVVV-EKSRHGRVKYFFRIGHGPRIRLPDDYSTAQASDFMQAYRSALAGTPPPL 60 Query: 59 EYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH 118 S R TL WL +Y++SA + SL+ ++ + + I+ KSG R IT + Sbjct: 61 PKARS-RHAQNTLGWLFDQYQQSAKFKSLSEGTQRARANLIKGIVSKSGKAQLRDITERA 119 Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEY----VAINPCLSVERPKRKTEGIRPW 174 +R G E R TP +A FL +M+ F W + + +P +V++ KTEG W Sbjct: 120 VRQGRERRSATPEAANNFLKTMKSAFAWGIDSGLLDGIIETDPTANVKKITTKTEGFHTW 179 Query: 175 TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT 234 T ++++ ++S G+ RLA + L+Y+GLR D + G QH+++ + + KT K G + Sbjct: 180 TVDEIEAYESTHDIGTTARLALDLLIYTGLRRGDVVKVGRQHVKDGVLNYKTGKNGEWVH 239 Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQK--MNATQFSIWFKAKATKAGVNKS-AHGVRK 291 + + + +P T F+ +K K +A F WF + +AGV K AHG+RK Sbjct: 240 LPILPALQNSIDASPTNDLT-FLQTEKGKPFSSAASFGNWFAKRCLEAGVEKGRAHGLRK 298 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 A ++A+ GAT +LMA +GW T D A YTK A R +L Sbjct: 299 AGAVLAAERGATTSQLMALFGWTTEDMATLYTKRASRSKL 338 >gi|319409101|emb|CBI82745.1| phage-related integrase/recombinase [Bartonella schoenbuchensis R1] Length = 347 Score = 202 bits (515), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 123/339 (36%), Positives = 183/339 (53%), Gaps = 9/339 (2%) Query: 8 PPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHEST-FIPAYMSAL---TGSTPKREYINS 63 PP + KE TRHGK I+Y R GHG+R R+ + + F+ Y AL P++ I Sbjct: 6 PPHLIKEITRHGKTIWYVRIGHGQRYRVYGTYGTQEFVDNYTLALKEAQNGLPRQ--IKR 63 Query: 64 PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123 R + WL+ +Y +S W + A +++ + + I + G Y+ I +HI V Sbjct: 64 TRLMEGSFDWLMHQYLQSMQWHNQAESTKKVKQRILNNISQHIGTCSYKSIEKQHILDAV 123 Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR-KTEGIRPWTKEDMQQF 182 E R+ TP++A FLT++ LF WAV + NP +++ PK TEG PW +ED+ ++ Sbjct: 124 ERRRETPAAARHFLTALNGLFNWAVDNSLLHRNPAFNIKPPKSFNTEGFSPWLEEDIDKY 183 Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP--DG 240 W G+ R+ + LLY+GLR D R G + + +NI +KT+K+ V LP Sbjct: 184 HQRWPLGTHERVWIDVLLYTGLRRGDVVRVGWKDVTDNIIHLKTEKSKFQTDVFLPILPE 243 Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADA 300 K L PIG ETF + +K+ F F+ AG+ KSAHG+RK +AT +A+A Sbjct: 244 LAKTLEAGPIGNETFICGKEGKKLTKESFGNLFRKACNAAGIKKSAHGLRKLAATRAANA 303 Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339 GAT +L A +GW D A YTK ADR RL I+ +++ Sbjct: 304 GATVSQLKAIFGWTEDDMASLYTKTADRKRLAIEAIKKL 342 >gi|319408877|emb|CBI82534.1| phage-related integrase/recombinase [Bartonella schoenbuchensis R1] Length = 347 Score = 202 bits (514), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 127/342 (37%), Positives = 184/342 (53%), Gaps = 13/342 (3%) Query: 8 PPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHEST-FIPAYMSALTGSTPKREYINSPRK 66 PP + KE TRHGK I+Y R GHG+R R+ + + F+ Y AL+ + + P+ Sbjct: 6 PPHLVKEITRHGKTIWYVRIGHGQRRRVHGVYGTQEFVDDYKKALS----ELQGYKLPKS 61 Query: 67 KPTTLK-----WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121 KP L WL+ +Y S W +LA ++ E ++ GD Y+ I HI + Sbjct: 62 KPGKLVEGSFIWLLKQYFNSLTWHNLAHATKRQKELILMKVSDAIGDIPYKAIKKSHIIA 121 Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT-EGIRPWTKEDMQ 180 GVE RK TP++A FL ++ LFKWA+ Q + NP V+RP K +G W +ED+ Sbjct: 122 GVERRKETPANARNFLKAVNSLFKWAIEQGLLEDNPAAGVKRPSLKNKDGFPAWIEEDIN 181 Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP-- 238 ++ W G+ R+ + LLY+GLR D R G + + +N+ +KT+K+ V LP Sbjct: 182 KYYQQWPLGTHERVWVDVLLYTGLRRGDVVRIGWKDVTDNVIHLKTEKSKFQTDVFLPIL 241 Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISA 298 K L P+G ETF +K+ F FK +AGV KSAHG+RK +AT +A Sbjct: 242 PELAKTLETGPVGNETFICGKGGKKLTKETFGNLFKNACNEAGVKKSAHGLRKLAATRAA 301 Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340 +AGAT +L A +GW D A YTK ADR RL I+ +++ Sbjct: 302 NAGATVAQLKAIFGWTEDDMASLYTKTADRKRLAIEAIKKLQ 343 >gi|240850538|ref|YP_002971937.1| phage-related integrase/recombinase [Bartonella grahamii as4aup] gi|240267661|gb|ACS51249.1| phage-related integrase/recombinase [Bartonella grahamii as4aup] Length = 345 Score = 200 bits (509), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 119/342 (34%), Positives = 187/342 (54%), Gaps = 11/342 (3%) Query: 6 RLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHEST-FIPAYMSAL----TGSTPKREY 60 R PP + +ERTRHGK+I+Y R GHG R R+ + + F+ Y A+ GS+ + Sbjct: 4 RRPPHLVRERTRHGKVIWYVRIGHGPRFRIEGTYGTQEFVDNYTLAIKQAQNGSSKTKR- 62 Query: 61 INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120 R + WL+ +Y +S W + + +++ + + + GD Y+ I +HI Sbjct: 63 --RTRLTEGSFDWLLHQYLQSMQWHNQSESTKKVKYRILNNVSKHIGDRAYKSINKQHIL 120 Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR-KTEGIRPWTKEDM 179 V+ R+ TP++A FLTS+ LF WAV + NP +++ PK +EG+ PW +ED+ Sbjct: 121 EAVDRRRETPAAAKHFLTSLNGLFNWAVDNALLNRNPAFNIKAPKSLNSEGLLPWREEDI 180 Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP- 238 ++ WS G+ R+ + LLY+GLR D+ R G + +++NI +KT+K+ V LP Sbjct: 181 DKYYHRWSHGTHERVWIDVLLYTGLRRGDAVRIGWKDVKDNIIYLKTEKSQFKTDVFLPI 240 Query: 239 -DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATIS 297 + L + PIG ETF K+ F F+ AG+ KSAHG+RK +AT + Sbjct: 241 LPELEETLKIGPIGNETFICGKGGNKLVKESFGNLFREACNAAGIKKSAHGLRKLAATRA 300 Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339 A+AGAT ++ A +GW A YTK ADR RL I+ +++ Sbjct: 301 ANAGATVSQMKALFGWTEDKMASLYTKTADRKRLAIEAIKKL 342 >gi|163867673|ref|YP_001608874.1| phage-related integrase/recombinase [Bartonella tribocorum CIP 105476] gi|161017321|emb|CAK00879.1| phage-related integrase/recombinase [Bartonella tribocorum CIP 105476] Length = 345 Score = 198 bits (503), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 120/342 (35%), Positives = 185/342 (54%), Gaps = 11/342 (3%) Query: 6 RLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHEST-FIPAYMSAL----TGSTPKREY 60 R PP++ ERTRHGKII+Y R GHG R R+ + + F+ Y AL G++ KR+ Sbjct: 4 RRPPYLVCERTRHGKIIWYVRIGHGPRFRIEGTYGTQEFVDNYTLALKQAQNGTSKKRK- 62 Query: 61 INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120 R + WL+ +Y +S W + + +++ + + + G+ Y+ I HI Sbjct: 63 --QTRLVEGSFDWLLHQYLRSIQWHNQSESTKKVKYRILNNVSKHIGERAYKSIGKHHIL 120 Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR-KTEGIRPWTKEDM 179 V+ R+ TP++A FLTS+ LF WAV + NP +++ PK EG PW +ED+ Sbjct: 121 DAVDRRRATPAAAKHFLTSLNGLFNWAVDNALLNRNPAFNIKPPKSFNAEGFTPWLEEDV 180 Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP- 238 +++ WS + R+ + LLY+GLR D+ R G + +++NI +KT+K+ V LP Sbjct: 181 EKYYHHWSVDTHERVWVDVLLYTGLRRGDAVRIGWKDVKDNIIHLKTEKSQFKTDVFLPI 240 Query: 239 -DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATIS 297 K L P+G ETF K+ F F+ AG+ KSAHG+RK +AT + Sbjct: 241 LPELAKTLEAGPVGDETFICGKGGNKLVKESFGNLFREACNAAGIKKSAHGLRKLAATRA 300 Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339 A+AGAT ++ A +GW A YTK ADR RL I+ +++ Sbjct: 301 ANAGATVSQMKALFGWSEDKMASLYTKTADRKRLAIEAIKKL 342 >gi|319406688|emb|CBI80325.1| phage-related integrase/recombinase [Bartonella sp. 1-1C] Length = 349 Score = 198 bits (503), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 121/341 (35%), Positives = 187/341 (54%), Gaps = 13/341 (3%) Query: 8 PPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHEST-FIPAYMSALTGSTPKREYINSPRK 66 PP + K+ T+HGKI++Y R GHG+R R+ + + FI Y S+L + I P+ Sbjct: 8 PPHLVKQITQHGKIVWYVRIGHGQRRRVHGTYGTQEFIDNYKSSLA----ELHGIIPPKP 63 Query: 67 KPTTL-----KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121 KP L WL+ +Y S +W +LA ++ E ++ G+ YR+I HI + Sbjct: 64 KPGKLIEGSFAWLLKQYFNSINWHNLAKGTKRQRELILMKVYDTIGNIPYREIKKAHIIA 123 Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK-RKTEGIRPWTKEDMQ 180 GVE RK PS+A FL ++ LF WA+ Q + NP + V++P +G WT+ED++ Sbjct: 124 GVERRKDKPSTAQNFLKALNGLFNWAIEQGLLENNPTVGVKKPALNNKDGFAAWTEEDVE 183 Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP-- 238 ++ WS G+ R+ LLY+GLR D+ R G + ++NI +KT+K+ V LP Sbjct: 184 KYYQQWSVGTYERVWINVLLYTGLRRGDAVRIGWKDTKDNIIHLKTEKSKFQTDVFLPIL 243 Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISA 298 + L + P+G+ETF K+ F F+ AG+ KSAHG+RK +AT +A Sbjct: 244 PELAETLKIGPVGEETFICGKSGNKLAKESFGNLFREACNAAGIKKSAHGLRKLAATRAA 303 Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339 +AGAT +L A +GW A YTK ADR +L ++ +++ Sbjct: 304 NAGATVSQLKAIFGWTEDKMASLYTKSADRKKLALEAIKKL 344 >gi|319408072|emb|CBI81725.1| phage-related integrase/recombinase [Bartonella schoenbuchensis R1] Length = 347 Score = 197 bits (501), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 125/342 (36%), Positives = 183/342 (53%), Gaps = 13/342 (3%) Query: 8 PPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHEST-FIPAYMSALTGSTPKREYINSPRK 66 PP + KE TRHGK I+Y R GHG+R R+ + + F+ Y AL+ + + P+ Sbjct: 6 PPHLVKEITRHGKTIWYVRIGHGQRRRVHGVYGTQEFVDDYKKALS----ELQGYKLPKS 61 Query: 67 KPTTLK-----WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121 KP L WL+ +Y S W +LA ++ E ++ GD Y+ I HI + Sbjct: 62 KPGKLVEGSFIWLLKQYFNSLTWHNLAHATKRQKELILMKVSDAIGDIPYKAIKKSHIIA 121 Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT-EGIRPWTKEDMQ 180 GVE RK TP++A FL ++ LFKWA+ Q + NP V+RP K +G W +ED+ Sbjct: 122 GVERRKETPANARNFLKAVNSLFKWAIEQGLLEDNPAAGVKRPSLKNKDGFPAWIEEDIN 181 Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP-- 238 ++ W G+ R+ + LLY+GLR D R G + + +N+ +KT+K+ V LP Sbjct: 182 KYYQQWPLGTHERVWVDVLLYTGLRRGDVVRIGWKDVTDNVIHLKTEKSKFQTDVFLPIL 241 Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISA 298 K L PIG ETF +K+ F F+ +AGV KSAHG+RK +AT +A Sbjct: 242 PELTKTLETGPIGDETFICGKGGKKLTKEAFGNLFRDACNEAGVKKSAHGLRKLAATRAA 301 Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340 +AGAT +L A +GW A YTK ADR RL +++ ++ Sbjct: 302 NAGATVAQLKAIFGWTEDRMASLYTKTADRKRLALESIEKLQ 343 >gi|315121974|ref|YP_004062463.1| integrase family protein [Candidatus Liberibacter solanacearum CLso-ZC1] gi|315122942|ref|YP_004063431.1| integrase family protein [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495376|gb|ADR51975.1| integrase family protein [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313496344|gb|ADR52943.1| integrase family protein [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 299 Score = 196 bits (499), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 104/277 (37%), Positives = 161/277 (58%), Gaps = 3/277 (1%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129 T KWLI +YR S H+ SL +R ++ F QII+ SGD + KIT +H+++ V+ R Sbjct: 23 TFKWLIDQYRLSGHFQSLNPTTRRVRDNLFYQIIKDSGDIPFAKITRRHLQNAVDRRSSK 82 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 PS AI FL ++ +FKWA E + NP + V RP +T G+ WT E ++ ++ Sbjct: 83 PSVAISFLKAISPVFKWAETCELITKNPVIGVCRPPIRTIGMHTWTMEQVEVYRKHHPIN 142 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTP 249 + RLA E +L+ GLR SD R G QH+++++ SI T+KTG + V + + K L Sbjct: 143 TMARLALELMLFLGLRRSDVIRIGKQHVKDSVLSIHTKKTGKQVHVPIFEDLQKCLDAVG 202 Query: 250 IGKETFFINNDKQKMNAT-QFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHE 306 + + TF I + +++ F WF+ + +AG+ AHG+RK ATI+A+AGA+ HE Sbjct: 203 VDRGTFLITAIGKPFSSSGSFGNWFRDRCKEAGLPDKCRAHGLRKAGATIAANAGASPHE 262 Query: 307 LMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343 LMA +GW D A+ YT+ + +L K ++ I+ V Sbjct: 263 LMAMFGWSKTDMADLYTREVNSKKLAYKAAKMIADCV 299 >gi|319408665|emb|CBI82320.1| phage-related integrase/recombinase [Bartonella schoenbuchensis R1] Length = 347 Score = 196 bits (497), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 127/341 (37%), Positives = 184/341 (53%), Gaps = 13/341 (3%) Query: 8 PPFVTKERTRHGKIIYYFRKGHG--RRIRLPYPHESTFIPAY---MSALTGST-PKREYI 61 PP + KE TRHGK I+Y R HG RR+ Y + F+ Y +S L G T PK + Sbjct: 6 PPHLVKEITRHGKTIWYVRISHGPRRRVHGVYGTQE-FVDDYKKALSELQGYTLPKSK-- 62 Query: 62 NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121 S + + WL+ +Y S W L+ ++ E ++ GD Y+ I HI + Sbjct: 63 -SDKFVEGSFIWLLKQYFDSVTWHELSHVTKRQKELILMKVSDAIGDIPYKAIKKDHIVA 121 Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT-EGIRPWTKEDMQ 180 GVE RK TP++A FL ++ LFKWA+ Q + NP V+RP K EG WT+ED+ Sbjct: 122 GVERRKETPATARNFLKAVNGLFKWAIEQGLLEDNPAAGVKRPSLKNKEGFPAWTEEDIN 181 Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP-- 238 ++ W G+ R+ + LLY+GLR D R G + + +NI +KT+K+ V LP Sbjct: 182 KYYQQWPLGTHERVWLDVLLYTGLRRGDVVRIGWKDVTDNIIHLKTEKSKFQTDVFLPIL 241 Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISA 298 K L PIG ETF +K+ F F+ +AG+ KSAHG+RK +AT +A Sbjct: 242 PELTKTLETGPIGDETFICGKGGKKLTKETFGNLFRDACNEAGIKKSAHGLRKLAATRAA 301 Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339 +AGAT +L A +GW + A YTK ADR RL +++ +++ Sbjct: 302 NAGATVSQLKAIFGWTDDEMASLYTKTADRKRLALESIKKL 342 >gi|254503745|ref|ZP_05115896.1| site-specific recombinase, phage integrase family protein [Labrenzia alexandrii DFL-11] gi|222439816|gb|EEE46495.1| site-specific recombinase, phage integrase family protein [Labrenzia alexandrii DFL-11] Length = 347 Score = 194 bits (492), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 119/344 (34%), Positives = 188/344 (54%), Gaps = 14/344 (4%) Query: 3 PSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHE----STFIPAYMSALTGS-TPK 57 P RLP + +E++RHG++ ++FR G G RIRLP ++ S F+ AY +ALTGS PK Sbjct: 2 PKRRLP-HLRREKSRHGRVKWFFRLGDGPRIRLPDDYDLDPASGFMQAYQAALTGSDVPK 60 Query: 58 REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK 117 + P+ TL WL+ +Y +SA + +LA +R S+ I KSG IT + Sbjct: 61 KPRSRYPQ---NTLGWLLDQYEQSAKFAALAKATRQSYGYQIKAIREKSGSVRLIDITER 117 Query: 118 HIRSGVESRKHTPSSAIQFLTSMRVLFKWAVR----QEYVAINPCLSVERPKRKTEGIRP 173 IR E+R TP++A FL M+V F W + + + +P V+R KTEG Sbjct: 118 SIRRAREARAATPNAANAFLKVMKVAFAWGMESGLLDDVIDRDPAKEVKRIDIKTEGHHT 177 Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII 233 WT E+++++++ W G+ RLA + L +GLR D + G QH++ ++ KTG I Sbjct: 178 WTVEEIERYEARWPLGTMERLALDLLACTGLRREDVYQIGRQHIKGGEIHVRASKTGGWI 237 Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQ-KMNATQFSIWFKAKATKAGVNKSAHGVRKF 292 + + + + T G+ T +N Q +NA F WF +A V AHG+RK Sbjct: 238 YLPVLPALQESIDATKTGELTLLLNTKGQPHLNAKAFGKWFGKACERAEVPGRAHGMRKA 297 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336 +AT+ A+ GAT H++MA +GW + A YT+ A+R ++ +++ Sbjct: 298 AATLVAERGATVHQMMAIFGWDSERMAIHYTRKANRKKISLEHG 341 >gi|220922490|ref|YP_002497792.1| integrase family protein [Methylobacterium nodulans ORS 2060] gi|219947097|gb|ACL57489.1| integrase family protein [Methylobacterium nodulans ORS 2060] Length = 346 Score = 193 bits (491), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 120/329 (36%), Positives = 182/329 (55%), Gaps = 9/329 (2%) Query: 8 PPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHES-TFIPAYMSAL-TGSTPKREYINSPR 65 PP + +E TRHGK ++Y R G G+RIR+ + S F Y A+ +G P ++ P Sbjct: 6 PPHLVREITRHGKPVWYVRVGQGKRIRMRETYGSPEFWRDYRLAVESGQLPAKQ--AGP- 62 Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125 P TL WLI+ Y S W L+ +R + + + +G+ R I K I +G + Sbjct: 63 -NPGTLSWLIARYVASPEWADLSRRTRTGRHAILRAVEKTAGNELLRHIDRKAIVTGRDR 121 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE--GIRPWTKEDMQQFK 183 R+ TPS+A FL +MR LF WAV E++ NP + V+ RK G WT+E+++QF+ Sbjct: 122 RRDTPSAANNFLYAMRALFAWAVEHEHIDQNPAVGVKPLARKNADVGFHTWTEEEVRQFE 181 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243 + W G+Q RLA + LLY+GLR SD G QH++ + F+I+T+KTG ++ + Sbjct: 182 ARWPVGTQERLALDLLLYTGLRRSDVVVLGRQHVKGDTFTIRTKKTGAVVVRPILPPLAA 241 Query: 244 LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGAT 303 +A P G F + + F+ WF+ KAGV +HG+RK +A +A+AGA+ Sbjct: 242 SIAAAPTGDLAFLVTSRGTPWVDDSFAKWFRRACEKAGVPGRSHGLRKAAARRAAEAGAS 301 Query: 304 AHELMATYGWKTVD-QAETYTKGADRIRL 331 EL A +GW+ ++ TYT+ AD RL Sbjct: 302 EMELNALFGWRPGSRESATYTRAADVERL 330 >gi|146340241|ref|YP_001205289.1| putative phage integrase/recombinase [Bradyrhizobium sp. ORS278] gi|146193047|emb|CAL77058.1| Putative Phage Integrase/recombinase [Bradyrhizobium sp. ORS278] Length = 345 Score = 191 bits (486), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 115/334 (34%), Positives = 178/334 (53%), Gaps = 11/334 (3%) Query: 8 PPFVTKERTRHGKIIYY--FRKGHGR-RIRLPYPHESTFIPAYMSALTGSTPK-REYINS 63 PP + + +RHGK+ ++ R+G + RIR Y + F+ AY +A+TG K I + Sbjct: 9 PPHLQRGVSRHGKVYWFDQMRRGAPKTRIRGEY-GSAEFMAAYDAAVTGGAAKPTPEIKA 67 Query: 64 PRKKPTTLKWLISEYRKSAHWGS-LAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG 122 P+ TL+W YR+S W S L+ +R E+ +++ + I I G Sbjct: 68 PK---GTLEWAWMLYRQSGAWQSGLSQATRRQRENIMKHVLKTAASTPLSDIDAAAIADG 124 Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR-KTEGIRPWTKEDMQQ 181 ++ R TPS A FL +M F W R + V+ NPC E PKR KT G + W+ +D++ Sbjct: 125 IDRRAKTPSQAKNFLQTMNQFFAWLKRAKIVSENPCDGAELPKRPKTGGFKKWSLDDVEL 184 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241 ++ W G++ R+ + +Y+GLR D+ G QH++N + S++T+K G + + L D Sbjct: 185 YEKRWPIGTRERVMLDDYMYTGLRRGDAAVVGKQHVRNGVISLQTEKAGQWVHIPLLDVL 244 Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADA 300 + L P+G + + FK AGV +KSAHG+RK +AT +AD Sbjct: 245 KRTLEAGPVGDLAWNATKSGRPFAKESLGNAFKDACVAAGVRDKSAHGLRKAAATRAADN 304 Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRLGIK 334 GATAHELMA + W + +AE YT+ ADR RL + Sbjct: 305 GATAHELMAIFRWVDIKEAELYTRAADRKRLAAQ 338 >gi|170739145|ref|YP_001767800.1| integrase family protein [Methylobacterium sp. 4-46] gi|168193419|gb|ACA15366.1| integrase family protein [Methylobacterium sp. 4-46] Length = 385 Score = 188 bits (477), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 120/332 (36%), Positives = 177/332 (53%), Gaps = 16/332 (4%) Query: 8 PPFVTKERTRHGKIIYYFRKGHGRRIRL--PYPHESTFIPAYMSALTGSTPKREYINSPR 65 PP + +E TRHG +++Y R G G+R R+ Y E+ F Y A+ G +P+ Sbjct: 10 PPHLVRETTRHGGVVWYVRVGQGKRTRMREAYGTEA-FWRDYRLAVEGKP-----TEAPK 63 Query: 66 KKPT-TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124 T TL WLI +Y +SA W L+ +R + + I +G + + I +G + Sbjct: 64 AAATGTLSWLIGKYVESAEWSDLSAATRKQRHAVYRAIEETAGTKPAKLVDKASILAGRD 123 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE--RPKRKTEGIRPWTKEDMQQF 182 R+ P +A FL +MR LF WAV ++Y+ INP L V+ G WT+E++ +F Sbjct: 124 RRRDRPHAANNFLKAMRGLFGWAVDRDYLTINPTLGVKLLTGDNDDAGFHAWTEEELARF 183 Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT--VELPDG 240 +S W G++ RLAF+ LLY+GLR D+ R G QH++ FSI+T+KTG ++T V LP Sbjct: 184 ESRWPIGTRQRLAFDLLLYTGLRRGDAVRLGRQHVRGQEFSIRTEKTGAVVTRPVLLP-- 241 Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADA 300 + + T G F F WFK +AGV S+HG+RK A +A+A Sbjct: 242 LAQSITATKTGGLAFICTERGTPFTKESFGTWFKKVCREAGVPGSSHGLRKAGARRAAEA 301 Query: 301 GATAHELMATYGWKTVD-QAETYTKGADRIRL 331 GAT +L A +GW ++ TYT+ AD RL Sbjct: 302 GATEAQLNALFGWAPGSRESATYTRTADNARL 333 >gi|85716138|ref|ZP_01047113.1| Integrase /recombinase [Nitrobacter sp. Nb-311A] gi|85696971|gb|EAQ34854.1| Integrase /recombinase [Nitrobacter sp. Nb-311A] Length = 316 Score = 180 bits (457), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 98/291 (33%), Positives = 157/291 (53%), Gaps = 9/291 (3%) Query: 44 IPAYMSALTGSTPKREYINSPRKKPT--TLKWLISEYRKSAHWGSLAVNSRISFESYFDQ 101 + AY +AL G P+ P+ + TL+WL + YR+S+ W L+ +R E+ Sbjct: 1 MEAYHAALAGERPQ------PKSEAARGTLEWLWTLYRQSSAWADLSAATRKQRENIMKH 54 Query: 102 IIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV 161 +++ +G IT I +G + R TPS A F++++R LF WA+ V +P V Sbjct: 55 VLKSAGHQPLSHITRASIVAGRDRRAKTPSQAKNFISTVRGLFGWALDANLVNSDPTAGV 114 Query: 162 ERPKRK-TEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN 220 +RPKRK +EG + WT++D+++F+ W+ G++ R+ F+ L++GLR D+ + G QH+++ Sbjct: 115 KRPKRKRSEGFQVWTEDDIEKFQKRWNRGTRERVMFDLFLFTGLRRGDAAQVGKQHVKDG 174 Query: 221 IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA 280 SI T+KTG +T+ + L P+G F M F+ A Sbjct: 175 SISINTEKTGIRVTIPIQPELQATLDAGPVGDLAFIATAAGVPMTKESLGNAFRDACRSA 234 Query: 281 GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 G+ KSAHG+RK +AT +A+ GAT EL A +GW A YT+ +R L Sbjct: 235 GITKSAHGLRKAAATNAANRGATERELEALFGWVGGQMASLYTRSVNREAL 285 >gi|315497345|ref|YP_004086149.1| integrase family protein [Asticcacaulis excentricus CB 48] gi|315415357|gb|ADU11998.1| integrase family protein [Asticcacaulis excentricus CB 48] Length = 356 Score = 177 bits (449), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 109/335 (32%), Positives = 175/335 (52%), Gaps = 13/335 (3%) Query: 10 FVTKERTRHGKIIYYFRKGHGRRIRLP-YPHESTFIPAYMSALTGSTPKREYINSPRKKP 68 ++ + RHG +YFR+ +++ LP P F+ AY +AL+GS K I + ++KP Sbjct: 10 YINRYTDRHGNTRHYFRRPGHKQVALPGKPGSKEFMAAYQAALSGSEGK-PRIGASKEKP 68 Query: 69 TTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIR-------KSGDFDYRKITTKHIR 120 + L+S Y SA + L S+ ++ +Q K+GD + H+ Sbjct: 69 GSFGALLSVYYDSAKFRNELKPQSQKAYRILLEQFRELEVTPGVKAGDCLVKDFRPAHLN 128 Query: 121 SGV-ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT-EGIRPWTKED 178 V + P A + +R +FK A+R E + NP VE PK K+ +GI W+ D Sbjct: 129 KLVIDGLADRPGQAKNMIKCLRGVFKCAIRNEMIDSNPAREVETPKAKSKDGIPAWSDAD 188 Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238 ++ F W G++ RLA LLY+G R SD R G QH++ ++ KT + + + Sbjct: 189 IEAFCKHWPSGTKQRLALALLLYTGQRRSDVARMGRQHVREGRIHVRQMKTDARLAIRIH 248 Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATIS 297 K L + P G+ TF + + + FSIWFK +A AGV ++SAHG+RK + + Sbjct: 249 SELQKELDLVPPGQMTFMLTEWGKPFSLAGFSIWFKKQAEDAGVQDRSAHGLRKAAGRML 308 Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 A+AG TA ++MA G +++ +AE YT+ AD+ +LG Sbjct: 309 AEAGCTAKQIMAILGHQSMTEAERYTRTADQEKLG 343 >gi|220927097|ref|YP_002502399.1| integrase family protein [Methylobacterium nodulans ORS 2060] gi|219951704|gb|ACL62096.1| integrase family protein [Methylobacterium nodulans ORS 2060] Length = 344 Score = 174 bits (440), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 111/328 (33%), Positives = 173/328 (52%), Gaps = 14/328 (4%) Query: 8 PPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHES-TFIPAYMSALTGSTPKREYINSPRK 66 PP + +E TRHG+ ++Y R G G+RIR+ P+ S F Y A+ G+ Sbjct: 6 PPHLVREVTRHGRPVWYVRVGQGKRIRMREPYGSPEFWRDYRLAVEGTP----PPAGKGP 61 Query: 67 KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126 P TL WL+++Y +SA W + +R + + I + +G + I + I +G + R Sbjct: 62 APGTLSWLLAKYVESAEWSDFSAATRKQRHAIYRAIEKTAGHEPIKLIDRRAILNGRDRR 121 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE--GIRPWTKEDMQQFKS 184 + P +A F+ +MR LF WAV + YVA +P V+ + + G WT+E++ +F++ Sbjct: 122 RDRPHAANVFIKAMRALFSWAVDRGYVATDPTAGVKMLAGENDDVGFHTWTEEELARFEA 181 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244 W G++ RLAF+ LLY+GLR D+ R G QH++ + FSI+T +T + Sbjct: 182 RWPLGTRERLAFDILLYTGLRRGDAVRLGRQHVKGDAFSIRT------VTRPILPQLAAS 235 Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATA 304 +A T G F + D F WF+ A V SAHG+RK A +A+AGAT Sbjct: 236 IAATKTGDLAFIVRMDGHPFVKEGFGNWFREACRAAKVPGSAHGLRKAGARRAAEAGATE 295 Query: 305 HELMATYGWKTVD-QAETYTKGADRIRL 331 +L A +GW+ ++ TYT+ AD RL Sbjct: 296 MQLNALFGWRPGSRESATYTRTADNARL 323 >gi|159043537|ref|YP_001532331.1| integrase family protein [Dinoroseobacter shibae DFL 12] gi|157911297|gb|ABV92730.1| integrase family protein [Dinoroseobacter shibae DFL 12] Length = 370 Score = 169 bits (427), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 103/331 (31%), Positives = 169/331 (51%), Gaps = 10/331 (3%) Query: 4 SLRLPPFVTKERTRHGKIIYYFRKGHGRRIRL-PYPHESTFIPAYMSALTGSTPKREYIN 62 S+RL V ++ RHG + Y R+ ++RL P F+ Y +A+ G+TP+ + Sbjct: 12 SIRLK-HVIEDTDRHGNVRIYLRRPGHLKVRLRSQPGTEDFLAEYRAAMMGATPRAPTVP 70 Query: 63 SPRK-KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121 R+ + KWL +Y SA + L+ ++ D+I KSG Y + +H+R Sbjct: 71 LDRRGSKGSFKWLCEQYYVSAEYQRLSGRTKYVRRGILDRICEKSGSKPYALMEPRHVRR 130 Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 + P +A F+ ++R ++ +AV E NP V K K +G WT E+++Q Sbjct: 131 MRDEMADRPEAANGFVKALRQVYSFAVEYELAQRNPARDVPYLKAKGDGFHSWTMEEVRQ 190 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-----KTQKTGTIITVE 236 F+ GS+PRLA +LY+G R SD R G QH+++ ++ + +K T+ Sbjct: 191 FEEHHPIGSKPRLALALMLYTGQRRSDIVRLGPQHIKDGWITLTQAKNRDRKPVTLSIPV 250 Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSAT 295 LP+ +L TP G F + + + F WF+ + +AG+ SAHG+RK A Sbjct: 251 LPE-LKAVLDATPTGNLAFLVTAFGKPFTSNGFGNWFRKQCDEAGLKHCSAHGLRKAGAA 309 Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGA 326 ++A+ GAT +LMA +GW T+ +A YT+ A Sbjct: 310 LAAENGATERQLMAIFGWTTMKEASRYTRAA 340 >gi|89055356|ref|YP_510807.1| phage integrase [Jannaschia sp. CCS1] gi|88864905|gb|ABD55782.1| phage integrase [Jannaschia sp. CCS1] Length = 370 Score = 162 bits (409), Expect = 9e-38, Method: Compositional matrix adjust. Identities = 101/330 (30%), Positives = 164/330 (49%), Gaps = 8/330 (2%) Query: 4 SLRLPPFVTKERTRHGKIIYYFRKGHGRRIRL-PYPHESTFIPAYMSALTGSTPKREYIN 62 S+RL V ++ RHG + Y R+ ++RL P F+ Y A+ G+TP+ Sbjct: 12 SIRLK-HVIEDTDRHGNVRLYLRRPGHLKVRLRSQPGTEDFLAEYRVAMMGATPRAPAGP 70 Query: 63 SPRK-KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121 R+ + KWL +Y SA + L+ ++ D+I K+G Y + +H+R Sbjct: 71 LERRGSKGSFKWLCEQYYVSAEYQRLSGRTKYVRRGILDRICEKNGSKPYALMEPRHVRR 130 Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 + P +A F+ ++R ++ +AV E NP V K K +G WT E+++Q Sbjct: 131 MRDEMADRPEAANGFVKALRQVYAFAVEYELAQRNPARDVPYLKAKGDGFHSWTMEEVRQ 190 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT--IITVELPD 239 F+ GS+PRLA +LY+G R SD R G QH+++ ++ K +T+ +P Sbjct: 191 FEDHHPIGSKPRLALALMLYTGQRRSDIVRLGPQHIKDGWITMTQAKNRDRKPVTLSIPV 250 Query: 240 --GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATI 296 +L TP G F + + + F WF+ + AG+ SAHG+RK A + Sbjct: 251 LLELKAVLDATPTGNLAFLVTTFGKPFTSNGFGNWFRKQCDVAGLKHCSAHGLRKAGAAL 310 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGA 326 +A+ GAT +LMA +GW T+ +A YT+ A Sbjct: 311 AAENGATERQLMAIFGWSTMKEASRYTRAA 340 >gi|315122595|ref|YP_004063084.1| phage-related integrase/recombinase [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495997|gb|ADR52596.1| phage-related integrase/recombinase [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 151 Score = 160 bits (406), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 74/136 (54%), Positives = 100/136 (73%) Query: 9 PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68 PFV +E+TRHGKIIYYFRKG R RLP P + +F+PAY+SAL+G ++ I K+P Sbjct: 8 PFVVREKTRHGKIIYYFRKGKDDRTRLPIPSDPSFMPAYLSALSGIPIEQSSIKPVIKEP 67 Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH 128 T++WLI +YRKS HW SLA+ +R + F II+ SGDF+Y+KIT KHIR G+E RK Sbjct: 68 QTMRWLIEQYRKSGHWASLALKTRKRIDQDFSNIIKNSGDFEYKKITAKHIRLGLEHRKS 127 Query: 129 TPSSAIQFLTSMRVLF 144 TP+SA+ FL+S+R+ + Sbjct: 128 TPASAVLFLSSIRLSY 143 >gi|146343024|ref|YP_001208072.1| putative phage integrase/recombinase [Bradyrhizobium sp. ORS278] gi|146195830|emb|CAL79857.1| Putative phage integrase/recombinase [Bradyrhizobium sp. ORS278] Length = 429 Score = 160 bits (406), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 108/369 (29%), Positives = 176/369 (47%), Gaps = 30/369 (8%) Query: 9 PFVTKERTRHGKIIYYFRKGH--GRRIRLPYPHEST-FIPAYMSALTGSTPKREYINSPR 65 P++ KE RHG+ ++Y R G+R R+ + ST F Y AL G + P Sbjct: 11 PYLHKEINRHGRTVWYVRNKDVGGKRTRIRGEYGSTEFNRNYDIALAGMFNRPRLAIDPS 70 Query: 66 KK-----PTTLKWLISEYR-KSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119 + +LKWL EY+ K+ W + ++ S ++ +G+ I +HI Sbjct: 71 EARAKVFDGSLKWLWEEYKAKAPDWREMKASTHKQRNSLMIHVLEANGNKRAAAIQKQHI 130 Query: 120 RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK-RKTEGIRPWTKED 178 G+ R PS+A FLT+MR +F WAV Q+ +A++P ++ PK KTEG W+ D Sbjct: 131 LDGLGRRAQNPSAARHFLTTMRRMFIWAVAQKILAVDPTEGIKTPKPAKTEGFVTWSDAD 190 Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAG-----------------VQHLQNNI 221 ++++ W G++ R+ + L++G R D+ G ++ + I Sbjct: 191 VRRYYKRWPLGTRERVMIDVYLFTGFRRGDAASFGPADVTEQVQERIGPDGKLEQISVPI 250 Query: 222 FSIKTQKTGTIITVELP--DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK 279 + + +K I V P D + L P+G ET+ + M FK K Sbjct: 251 ITKRLEKGSETIEVTFPMLDVLRRTLEAGPVGTETYIATRQGKPMTKESLGNVFKEKCVA 310 Query: 280 AGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRR 338 AG+ N+SAHG+RK +AT++A+ GAT EL A +GW A YT+ A+R +L + Sbjct: 311 AGLANRSAHGLRKAAATVAAENGATEAELDAIFGWTDRRMASHYTRNANRKKLAYGGVAK 370 Query: 339 ISSVVDSDD 347 + + S+D Sbjct: 371 LERKIGSED 379 >gi|121602161|ref|YP_989344.1| integrase [Bartonella bacilliformis KC583] gi|120614338|gb|ABM44939.1| integrase [Bartonella bacilliformis KC583] Length = 250 Score = 154 bits (388), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 91/247 (36%), Positives = 140/247 (56%), Gaps = 3/247 (1%) Query: 101 QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160 +++ G Y+ I KHI +GVE RK TP++A FL ++ LFKWA+ Q + N L Sbjct: 2 KVLDSIGHLSYKVIQKKHIIAGVERRKETPATAQNFLKALNSLFKWAMEQGLLEKNSTLG 61 Query: 161 VERPKRKT-EGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN 219 V+ P K +G W++ D+ ++ W G+ R+ + LLY+GLR D+ R G + + + Sbjct: 62 VKAPPLKNKDGFIVWSEADIDKYYYHWPLGTHERVWIDILLYTGLRRGDAIRIGWKDVTD 121 Query: 220 NIFSIKTQKTGTIITVELP--DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKA 277 NI IKT+K+ + V LP + L + PIG+ETF + +K+ F F+ Sbjct: 122 NIIHIKTEKSKFQMDVFLPILPELAETLEIGPIGEETFICGKNGKKLTKEGFGNVFREAC 181 Query: 278 TKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 A V KSAHG+RK +AT +A+AGAT +L A +GW + A YTK ADR RL ++ + Sbjct: 182 NVANVKKSAHGLRKLAATRAANAGATVAQLKAIFGWTEDNMASLYTKSADRKRLALETIK 241 Query: 338 RISSVVD 344 ++ + D Sbjct: 242 KLQKMRD 248 >gi|218532644|ref|YP_002423460.1| integrase family protein [Methylobacterium chloromethanicum CM4] gi|218524947|gb|ACK85532.1| integrase family protein [Methylobacterium chloromethanicum CM4] Length = 405 Score = 150 bits (378), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 108/348 (31%), Positives = 169/348 (48%), Gaps = 28/348 (8%) Query: 6 RLPPFVTKERTRHGKIIYYFRKGHGRRIRLP-YPHESTFIPAYMSALTGSTPKREYINSP 64 RLP F ++ RHG + Y R+ ++RLP P F+ AY +AL G++ + P Sbjct: 4 RLPRFCVEDVDRHGNVRVYLRRKDWPKVRLPGVPWTEPFMEAYRAALNGTSE-----DKP 58 Query: 65 RKK----PTTLKWLISEYRKSAHWGSLAVNS----RISFESYFDQIIRKSG-----DFDY 111 R + P T KWL +Y SA + +L + R E+ +D+ + DF Sbjct: 59 RDRYATLPDTWKWLCQQYVTSARFKTLDPVTQRRRRALLEATYDEPTKPGAKTVFADFPL 118 Query: 112 RKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAI---NPCLSVERPKRKT 168 ++T IR + + P A + ++R FKWAV E VA+ NP V + Sbjct: 119 ARLTPAAIRILRDRKADVPDGANNTVKAIRATFKWAVHPE-VALASHNPARDVGYIATAS 177 Query: 169 EGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228 EG W+ +++++F + GS+ LA LL++G R SD+ G QHLQ K Sbjct: 178 EGFHTWSVDEVKRFVARHPLGSRAYLALCLLLFAGGRRSDAVLFGRQHLQGAWLRYTQHK 237 Query: 229 --TGTIITVELP--DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-N 283 +T+E+P + P F + + + F WFK + +AG+ + Sbjct: 238 GRNAKPMTLEVPVLPALRAAIEACPSQNLAFLVTERGKPFTSNGFGNWFKDRCREAGLLH 297 Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 SAHG+RK AT++A+ GAT +LMA +GW+T AE YT+ A++ RL Sbjct: 298 CSAHGLRKAGATLAAENGATERQLMAMFGWRTSKMAEHYTRKAEQKRL 345 >gi|300023048|ref|YP_003755659.1| integrase family protein [Hyphomicrobium denitrificans ATCC 51888] gi|299524869|gb|ADJ23338.1| integrase family protein [Hyphomicrobium denitrificans ATCC 51888] Length = 411 Score = 148 bits (373), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 97/342 (28%), Positives = 170/342 (49%), Gaps = 20/342 (5%) Query: 10 FVTKERTRHGKIIYYFRKGHGRRIRL-PYPHESTFIPAYMSAL----TGSTPKREYINSP 64 ++ ++ RHG + YFR R+IRL P F Y S + TG + E S Sbjct: 13 YLVEDTDRHGNVRIYFRYPGYRKIRLRERPTSPEFAERYSSLIEQFATGCYKEAEK-TSV 71 Query: 65 RKKPTTLKWLISEYRKSAHWGSLAVNSRIS----FESYFDQIIRKSGDFDYRKITTKHIR 120 P TL WL++ +R S + +L +++ + ES ++ I + +R I+ Sbjct: 72 SAVPGTLGWLVTAFRASKDFSNLDPSTQRTRARVLESMLNEPIFQEAAETFRNFPLDRIK 131 Query: 121 -SGVE----SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175 S +E +K P +A + ++R +FKWA +++ NP +S+ +P+ + G W Sbjct: 132 LSDLEVLRDRKKALPGAATDRVKALRPMFKWATSKKHCVANPAISLTKPRLISNGHHTWL 191 Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT----GT 231 ++++ F+ G++ LA +LY+G R SD+ + G QH Q + K T Sbjct: 192 PDEIEAFQRRHPLGTKAHLALSIMLYTGARRSDAVQLGRQHEQGDSLRWTAHKNRNRYPT 251 Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVR 290 II + + + P G + + + F WF + +AG+ + SAHG+R Sbjct: 252 IIHIPMLQPLAAAIQAGPTGDMVYLLTEYGKPFTIAGFGNWFHDRCIEAGLPQCSAHGLR 311 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 K +T +A+AGATAH+LMA +GW+++ +AE YT+ A+R ++ Sbjct: 312 KAGSTRAAEAGATAHQLMAMFGWRSLAEAEIYTRAAERKKMA 353 >gi|300021643|ref|YP_003754254.1| integrase family protein [Hyphomicrobium denitrificans ATCC 51888] gi|299523464|gb|ADJ21933.1| integrase family protein [Hyphomicrobium denitrificans ATCC 51888] Length = 716 Score = 147 bits (370), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 95/342 (27%), Positives = 169/342 (49%), Gaps = 20/342 (5%) Query: 10 FVTKERTRHGKIIYYFRKGHGRRIRL-PYPHESTFIPAYMSAL----TGSTPKREYINSP 64 ++ ++ RHG + YFR R+IRL P F Y S + TG + E S Sbjct: 13 YLVEDTDRHGNVRIYFRYPGYRKIRLRERPTSPEFAERYSSLIEQFATGCYKEAEK-TSV 71 Query: 65 RKKPTTLKWLISEYRKSAHWGSLAVNSRIS----FESYFDQIIRKSG-----DFDYRKIT 115 P TL WL++ +R S + +L +++ + ES ++ I + +F +I Sbjct: 72 SAVPGTLGWLVTAFRASKDFSNLDPSTQRTRARVLESMLNEPIFQEAAETFRNFPLDRIK 131 Query: 116 TKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175 + + +K P +A + ++R +FKWA +++ NP +S+ +P+ + G W Sbjct: 132 LSDLEVLRDRKKALPGAATDRVKALRPMFKWATSKKHCVANPAISLTKPRLISNGHHTWL 191 Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT----GT 231 ++++ F+ G++ LA +LY+G R SD+ + G QH Q + K T Sbjct: 192 PDEIEAFQRRHPLGTKAHLALSIMLYTGARRSDAVQLGRQHEQGDSLRWTAHKNRNRYPT 251 Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVR 290 II + + + P G + + + F WF + +AG+ + SAHG+R Sbjct: 252 IIHIPMLQPLAAAIQAGPTGDMVYLLTEYGKPFTIAGFGNWFHDRCIEAGLPQCSAHGLR 311 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 K +T +A+AGATAH+LMA +GW+++ +AE YT+ A+R ++ Sbjct: 312 KAGSTRAAEAGATAHQLMAMFGWRSLAEAEIYTRAAERKKMA 353 >gi|146340556|ref|YP_001205604.1| putative phage integrase [Bradyrhizobium sp. ORS278] gi|146193362|emb|CAL77378.1| putative phage integrase [Bradyrhizobium sp. ORS278] Length = 358 Score = 145 bits (366), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 97/330 (29%), Positives = 160/330 (48%), Gaps = 8/330 (2%) Query: 6 RLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65 RLPP V + + G + Y +R G G R++LP P F AY +A+ G+ R + + Sbjct: 5 RLPPNVERNVVK-GHVYYAYRIGKGPRVKLPDPSSEEFGAAYQAAIQGAAQTRPAPS--Q 61 Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV-E 124 P +L LI+ Y S + SL +S+ + + + G +T + I + + + Sbjct: 62 DAPQSLGALIASYYDSDEFRSLRASSKEGYRRRLELMRAAHGHRSVGGLTRERIEAKILK 121 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 + P + + L +R+L + A +++ +NP ++R K K IR WT ++ F++ Sbjct: 122 PLSNKPGARLDTLKKLRILIRHAKALKWLKVNPSEGIKRGKSKE--IRGWTDNELAAFEA 179 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244 W G++ R A+E +L G +D+ N +F +KT + V+ D + Sbjct: 180 RWPFGTRQRAAYEMMLNVGTARADTHLTTWTQADNEVFEYTRRKTDVAVLVQQADSLCQA 239 Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG--VNKSAHGVRKFSATISADAGA 302 LA P T + + + FS W + T AG ++ HG+RK + ADAGA Sbjct: 240 LAALPRRHVTILVTEWGKPFSVDGFSGWMRDAMTAAGLPLDCKPHGLRKTLGRMLADAGA 299 Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLG 332 TAHE+MA G T+ +AE YT+ ADR R G Sbjct: 300 TAHEIMAALGHMTLAEAERYTREADRRRGG 329 >gi|148257958|ref|YP_001242543.1| putative phage integrase [Bradyrhizobium sp. BTAi1] gi|146410131|gb|ABQ38637.1| putative phage integrase [Bradyrhizobium sp. BTAi1] Length = 382 Score = 145 bits (366), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 103/349 (29%), Positives = 172/349 (49%), Gaps = 11/349 (3%) Query: 6 RLPPFVTKERTRHGKIIYYFRKGHGRRIRLPY-PHESTFIPAYMSALTG-STPKREYINS 63 RLPP+V + + G FR+G G RIRLP P S F+ AY SAL G +T R + S Sbjct: 4 RLPPYVERNHVK-GHTYLSFRRGKGARIRLPDDPTSSEFMSAYQSALLGQATSSRPELRS 62 Query: 64 PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123 P T+ LI+ Y +S+ + L S+ + + + + G ++ + I +G+ Sbjct: 63 PVH--GTISALIASYMRSSDYIGLRKTSKEGYGRRLEALRIEHGHRTVAGLSRERIITGI 120 Query: 124 -ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 + P +A+ L +R+L + A+ ++ +P + ++RPK + IR WT+++++ F Sbjct: 121 LQPFADRPGAALDTLKKLRILIRHAINIGWIKHDPSVGIKRPK--LQRIRSWTEDEIELF 178 Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGF 241 + W ++ RLAFE L +G R SD R H+ N ++ Q+TG + + L Sbjct: 179 RKKWPLETKQRLAFELFLNTGQRRSDVVRMAWSHITPENRIAVAQQETGRRLLIPLHRDL 238 Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISAD 299 + LA+ + Q + FS W + T AG+ HG+RK + A+ Sbjct: 239 LSALAVAKRDHMSIITTAYGQSFSVDGFSQWMRDAITDAGLPLGCQPHGLRKATGRRLAE 298 Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348 AGATA +M+ G T+ +AE YT+ AD+ L + R+ +D P Sbjct: 299 AGATAKMIMSVLGHTTLAEAERYTEEADQASLAVDAVARLEGHKANDFP 347 >gi|222107069|ref|YP_002547860.1| Integrase [Agrobacterium vitis S4] gi|221738248|gb|ACM39144.1| Integrase [Agrobacterium vitis S4] Length = 344 Score = 142 bits (357), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 87/334 (26%), Positives = 162/334 (48%), Gaps = 6/334 (1%) Query: 6 RLPPFVTKERTRHGKIIYYFR-KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP 64 R P + RHGKI +Y+R KG + P F+ +Y A+ G ++ + Sbjct: 3 RPPKYCQGFEDRHGKIRWYYRRKGFPIKPLSGLPWSPEFMASYEKAMAG---EKIEVGKS 59 Query: 65 RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124 + P T+ L+ Y K++ + L+ +++ ++ ++ + G + ++++ + Sbjct: 60 KSAPGTVSALVVSYYKTSDFQRLSESTKTTYRGIIERFREEHGAKRVHHMQAQNVKKIIG 119 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 + TP++A L + +L AV ++ +P V++ + K+EG W + ++QF + Sbjct: 120 EKAATPAAANNLLRIIHILMLHAVDLQWRRDDPTKDVKKIRHKSEGFLTWEEHHIEQFTA 179 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244 + G++ LA LLY+G R SD R G QH+++ SI QKTG ++ + F + Sbjct: 180 YHKPGTRAHLALSLLLYTGQRRSDVVRMGRQHVRDGWISIVQQKTGQLVEIPFHAAFKDV 239 Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGA 302 L P+ TF + F+ WF+ +AG+ S HG+RK + A+AG Sbjct: 240 LNALPLKNMTFLTTAQGKPFTPAGFTNWFRDMTKEAGLPDKLSPHGLRKAACRRLAEAGC 299 Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336 T H++MA G +++D+ YT A R L + + Sbjct: 300 TPHQIMAISGHQSLDEVTRYTVAASRRELATQAA 333 >gi|92115952|ref|YP_575681.1| phage integrase [Nitrobacter hamburgensis X14] gi|91798846|gb|ABE61221.1| phage integrase [Nitrobacter hamburgensis X14] Length = 389 Score = 139 bits (349), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 103/328 (31%), Positives = 162/328 (49%), Gaps = 10/328 (3%) Query: 8 PPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHES-TFIPAYMSALTGSTPKREYINSPRK 66 PP +TK+ RHG I +Y R G ++RL + + F AY L G+ + Sbjct: 6 PPRLTKDTDRHGNIRWYVRTLDGPKVRLRDEYGTPAFWQAYRDVLAGNIKPPPPSTRIER 65 Query: 67 KP---TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123 KP +L WL S+Y SA + L +R + D I G+ Y+ + KHIR+ Sbjct: 66 KPFDKASLAWLCSQYYTSAEYKQLNERTRYVRRATLDHICAADGEKPYKLLLPKHIRARR 125 Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 ++R P SA + ++R +F +A+ +YVA+NP +V K K +G W+ E++++F+ Sbjct: 126 DARADRPESANGMIKALRQVFAFAIENDYVALNPAQAVPYLKAKGDGHHSWSLEEIEKFE 185 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG---TIITVELP-- 238 G+ RLA LLY+G R SD G ++ TQ G IT+++P Sbjct: 186 KKHPIGTMARLALALLLYTGQRRSDVIVLGPALVREGWLHF-TQFKGREHKPITLDIPII 244 Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISA 298 +++ T GK+T+ +N + A F WF + A V AHG+RK +A+ A Sbjct: 245 PELQRVIDATACGKDTYLLNGLGRPFTAAGFGNWFHDRCKDAKVPGRAHGLRKAAASRLA 304 Query: 299 DAGATAHELMATYGWKTVDQAETYTKGA 326 + G++ HE+MA G T + YTK A Sbjct: 305 ELGSSEHEIMAITGHTTSKEVMRYTKAA 332 >gi|58040908|ref|YP_192872.1| Phage related integrase [Gluconobacter oxydans 621H] gi|58003322|gb|AAW62216.1| Phage related integrase [Gluconobacter oxydans 621H] Length = 332 Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 96/312 (30%), Positives = 156/312 (50%), Gaps = 6/312 (1%) Query: 24 YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAH 83 YFR R LP + F PAY +A+ PK E P + T L ++ KS Sbjct: 4 YFRHPRLPRQVLPPVDDPAFWPAYHAAI-AQIPKDE--PRPIRGTGTFARLCEDWLKSNS 60 Query: 84 WGSLAVNSRISFESYFDQIIRKS-GDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRV 142 + SL ++++ + +++R+ F KHIR+ + P+S ++L + Sbjct: 61 FLSLKPSTQVGHRNIVLRMMREDFATFHVSDFEPKHIRAIINRFSDRPASGNRWLRIFGI 120 Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS 202 LF+ A+ Q+ + ++P V R K + EG RPWT+ ++ QF++ W GS+ R AF LLY+ Sbjct: 121 LFRLAIEQDLIQVDPARDVRRLKERAEGARPWTEVEVAQFQAHWPLGSRARTAFALLLYT 180 Query: 203 GLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ 262 G R SD + G +++ + ++ QKTGT + V + LA T K + + Sbjct: 181 GQRRSDVVKIGPACIKDGMIAVTQQKTGTSLMVPILKDLALALAATLGVKAYYLEVVPGR 240 Query: 263 KMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320 K ++ K AG+ + SAHG+RK +A A+AG T H++ A G KT+ + E Sbjct: 241 KPSSDSLGNLMKDWTLAAGLPSDLSAHGLRKTAARRLAEAGCTTHQIAAITGHKTLAEVE 300 Query: 321 TYTKGADRIRLG 332 YT+ D+ RL Sbjct: 301 RYTRSVDQKRLA 312 >gi|218528999|ref|YP_002419815.1| integrase family protein [Methylobacterium chloromethanicum CM4] gi|218521302|gb|ACK81887.1| integrase family protein [Methylobacterium chloromethanicum CM4] Length = 367 Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 96/355 (27%), Positives = 165/355 (46%), Gaps = 15/355 (4%) Query: 7 LPPFVTKERTRHGKIIYYFRKGHGRRIRLP-YPHESTFIPAYMSALTGSTPKREYINSPR 65 LP +V + RH + YYFR+ ++RL P F+ Y L G P+R+ ++P Sbjct: 10 LPEYVVSDTDRHDNVRYYFRRRPAPKVRLEGIPGSEAFMNKYYDCLDGRIPERKSRSAP- 68 Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125 P + L Y S + SL V++R D+I G + +H+R+ Sbjct: 69 AAPGSFAALRLAYLGSPEFKSLDVSTRAWQRRALDEISEAHGTKRVAMMQARHVRTLRNG 128 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 ++ TP++A L +++ LFKWA + +P +V+ K +G PW+ +++ +++ Sbjct: 129 KRETPAAANTMLKALKALFKWANENGRASSDPTRNVDFLKYAKKGFHPWSPSEVEAYEAA 188 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI----KTQKTGTIITVEL-PDG 240 G+ RLA E LLY+ R D R G +L F + +I + + PD Sbjct: 189 HLVGTTARLALELLLYTAGRREDVVRFGPHNLAAGRFRFVQGKNEDRAPVLIDIPVHPDL 248 Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISAD 299 + A P G F + + + F FK +AG+ + SAHG RK +A A Sbjct: 249 AEAIAAAQPSGA-IFILTHYGRPFTPNGFGNRFKKWCIQAGLPHCSAHGCRKAAAARLAT 307 Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLG------IKNSRRISSVVDSDDP 348 GATAH++M+ G +++ + E YT+ A R ++ + + R S + ++ P Sbjct: 308 RGATAHQIMSVTGHQSLAEVERYTRSALRAQMADTAMALLPDRRSAGSTIPANRP 362 >gi|86358521|ref|YP_470413.1| integrase/recombinase protein [Rhizobium etli CFN 42] gi|86282623|gb|ABC91686.1| probable integrase/recombinase protein [Rhizobium etli CFN 42] Length = 404 Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 88/348 (25%), Positives = 162/348 (46%), Gaps = 25/348 (7%) Query: 19 GKIIYYFRKGHGRRIRLPYPHES-------TFIPAYMSALT----GSTPKREYINSPRKK 67 G YY RK +++R+ + F+ AY +AL G+ P ++ + PR+ Sbjct: 17 GNPRYYVRKNGYKKVRIFEKFDDGRGNITEAFMKAYWAALAAMDGGAAPSKKEV--PRED 74 Query: 68 PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK 127 T WL+ +Y +S + L V ++ S + +G Y+K + + + RK Sbjct: 75 --TFDWLVDQYYRSNAFKRLEVTTQSDKRSVLARFCMTAGPLPYKKFRQQDVANSQLKRK 132 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQE--YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 TP +A + + +R LF WA++Q+ ++ NP +++ +EG WT +++ ++++ Sbjct: 133 ETPGAADKLVKVLRALFNWAMKQDPPLISANPATGIKKLNAASEGFHTWTPDEIDTYRAY 192 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT----GTIITVELPDGF 241 G+ RLA E ++ G R SD+ G QH +K T+I V + Sbjct: 193 HPIGTTARLALEIMINVGARISDAAYIGRQHESGGELRFTARKNRNRKPTVIEVPMMPDL 252 Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADA 300 + L T G + + + + AG+ + SAHG+RK +A I A++ Sbjct: 253 VDALRHTKTGDFNYLVTEHGRPFTVNGLGNRMREWCDAAGLPQCSAHGLRKAAAVIFAES 312 Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348 GA+A E+ A +GW ++ AETY + A + ++ S + + D +P Sbjct: 313 GASAPEMCAVFGWSKLETAETYIRNAQKRKMA---SNAFARLADYRNP 357 >gi|329888236|ref|ZP_08266834.1| phage integrase family protein [Brevundimonas diminuta ATCC 11568] gi|328846792|gb|EGF96354.1| phage integrase family protein [Brevundimonas diminuta ATCC 11568] Length = 343 Score = 129 bits (325), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 89/343 (25%), Positives = 164/343 (47%), Gaps = 14/343 (4%) Query: 8 PPFVTKERTRHGKIIYYFRKGHG--RRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65 P FV+ R RHG + + FR+ + R + E + A+ + + + PK I R Sbjct: 5 PKFVSAYRDRHGVLRWRFRRTGSPQSQTRAIFGTEDWW--AWYAESSEARPK--AIGQDR 60 Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125 KP ++ L Y SA + L N++ +++ D+ G + ++ +HIR ++ Sbjct: 61 TKPGSIHALAVAYYSSARFLQLKPNTKHTYKGVLDRYRDVHGAKPFSRLEPRHIRQQMDD 120 Query: 126 -------RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 + +T + A L +R + ++A+ + ++++P + V K +T G WT+++ Sbjct: 121 MAREMIEQGNTVTPANTMLKVLRSVMRFAMERGLISVDPTMGVRMLKHQTSGFHTWTEDE 180 Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238 + F++ W GS+ RL F+ LLY+ R D + V + + +++ KTG +I + Sbjct: 181 IAMFEAHWPLGSKQRLGFDLLLYTAQRSDDVRQMTVHQIARDRVTVRQGKTGQLIDIPQH 240 Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATIS 297 LA + IG + F W K A KAG+ + SAHG+RK + Sbjct: 241 PRLQASLAASAIGHLVVLTTQHGKMYTPNGFGNWIKDAAVKAGLPHCSAHGLRKAQSRRL 300 Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340 A+AG + HE+ A G +++ + E YT+ A+R L +R+ Sbjct: 301 AEAGCSTHEIAAITGHQSLKEIERYTREANRRGLADGAMKRVG 343 >gi|83945755|ref|ZP_00958099.1| phage integrase [Oceanicaulis alexandrii HTCC2633] gi|83850845|gb|EAP88706.1| phage integrase [Oceanicaulis alexandrii HTCC2633] Length = 310 Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 88/298 (29%), Positives = 148/298 (49%), Gaps = 12/298 (4%) Query: 44 IPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII 103 + AY AL +TP + + T+ LI +Y S+ + +L +++ ++ S + Sbjct: 1 MAAYAQAL-ANTPLETDLAKSTARKGTIDRLIEDYYHSSAFDTLETSTQRTYRSSLEPFR 59 Query: 104 RKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER 163 G R + T+H+ + + P++A + L ++ +F AVRQE NP ++ Sbjct: 60 NTYGHMPVRTVQTRHLERILFDLREKPTAANKLLKRLKTIFDLAVRQEIRHDNPAKPIKA 119 Query: 164 PKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN---- 219 K ++G WT+ +++ FK+ + GS+PRLA LL +G R SD R G Q + + Sbjct: 120 RKVDSDGFHAWTEAEIEAFKTAYPSGSKPRLALALLLCTGQRGSDVARMGPQDIVDIQGG 179 Query: 220 -NIFSIKTQKTGTIITVE-LPDGFMKLLAMTPIGKETFFINNDKQKMNATQ-FSIWF--K 274 +K QKT T + + LP+ ++L A GK F+ + K + + F WF + Sbjct: 180 SRAIRVKQQKTKTPLLIPILPELAVELAARN--GKHMVFLTTEYGKAFSVKGFQQWFAER 237 Query: 275 AKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 AKA +AHG+RK A A+AGAT H + + G KT+ + YT G D+ +L Sbjct: 238 AKAATGNPKCTAHGLRKACAYRLAEAGATVHMIQSITGHKTLAEVARYTAGRDQFKLA 295 >gi|312114649|ref|YP_004012245.1| integrase family protein [Rhodomicrobium vannielii ATCC 17100] gi|311219778|gb|ADP71146.1| integrase family protein [Rhodomicrobium vannielii ATCC 17100] Length = 312 Score = 127 bits (320), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 84/303 (27%), Positives = 141/303 (46%), Gaps = 5/303 (1%) Query: 10 FVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69 +V +++ R+GK Y+ + R+ L P S PA+++ +T E PR Sbjct: 11 YVRRKKGRNGKEHLYYEEPGKERVALRGPIGS---PAFLADYNAATEAEELPKRPRAAAY 67 Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129 +L L++ Y+ S + +LA +++ ++ GD D R + I E Sbjct: 68 SLTALVAAYQGSQRFRALAPSTQAVRRRIMSRLAAVYGDGDIRSMKRGDIVRMTEKLASG 127 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 P A L + L K A+ + NP + RP+ KT+G WT+ ++ ++ W G Sbjct: 128 PEGARSLLKLTQQLVKLAIDLGWRDDNPVRDISRPRIKTDGRHCWTEAEIAAYRKRWDVG 187 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTP 249 ++ RLA E LL +G R D R +H++ + +KT + + +K++A T Sbjct: 188 TRQRLALELLLQTGQRKGDVVRLSREHVKGGRLKLTQEKTHVCVDAAIKPELLKIIAATV 247 Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHEL 307 G +T ++ F F+A +AG+ SAHG+RK A A+AGATAHE+ Sbjct: 248 TGVQTLLVSTKGTPYGTKAFCGVFRAWCDEAGLPPECSAHGLRKAFARRMAEAGATAHEI 307 Query: 308 MAT 310 MA Sbjct: 308 MAA 310 >gi|299134375|ref|ZP_07027568.1| integrase family protein [Afipia sp. 1NLS2] gi|298591122|gb|EFI51324.1| integrase family protein [Afipia sp. 1NLS2] Length = 383 Score = 126 bits (317), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 92/331 (27%), Positives = 160/331 (48%), Gaps = 21/331 (6%) Query: 23 YYFR--KGHGRRIRLPYPHES-------TFIPAYMSALTGSTPKREYINSPR-KKPTTLK 72 YY R + ++IR+ E+ F+ AY+ AL ++ +E ++P+ + T Sbjct: 21 YYVRNLRKSSKKIRIRESFEAPDGTITPEFMKAYLDAL--ASLDKETSSAPKASREKTFS 78 Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRK-SGDFDYRKITTKHIRSGVESRKHTPS 131 WL +Y +SA + ++ ++ +GD Y + + R TP Sbjct: 79 WLCDQYYRSAEFQRFDRLTQADKRGVLNRFCAAGAGDLPYAAFRQADVERSRDKRAGTPG 138 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191 +A + + +R LFKWA+++ ++NP + VE+ + EG WT +++ ++ S G++ Sbjct: 139 AADKLVKYLRALFKWAIKKRLASVNPAIGVEKIN-EGEGWHAWTPDEVATYRKHHSIGTK 197 Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNN---IFSIKTQKTGTIITVELPDGFMKLLAM- 247 RLA E +L G R SD+CR G QH N + K + + T+E P A+ Sbjct: 198 ARLALELMLNVGARISDACRIGRQHESNGWLKFVAWKNRNKKSRKTIECPITLELRAAID 257 Query: 248 -TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAH 305 T G T+ IN+ + + A + + S+HG+RK +A I A+ GATA Sbjct: 258 ATETGDLTYLINDLGKAFTIDGLGNKMRDWCDAADLPQCSSHGLRKAAAVILAENGATAP 317 Query: 306 ELMATYGWKTVDQAETYTKGADRIRLGIKNS 336 EL A +GW ++ AETY + A + R+ + N+ Sbjct: 318 ELCAIFGWSKLETAETYIRQA-QSRIMVSNA 347 >gi|312115482|ref|YP_004013078.1| integrase family protein [Rhodomicrobium vannielii ATCC 17100] gi|311220611|gb|ADP71979.1| integrase family protein [Rhodomicrobium vannielii ATCC 17100] Length = 352 Score = 125 bits (314), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 90/332 (27%), Positives = 156/332 (46%), Gaps = 10/332 (3%) Query: 6 RLPPFVT-KERTRHGKIIYYFRKGHGRRIRLP-YPHESTFIPAYMSALTGSTPKREYINS 63 + PP+ K R+ Y+ R G+ R+R+P P F+ Y A + K I + Sbjct: 8 KAPPYCHWKTNGRNFGCWYFERPGY-PRVRVPGLPWTPEFMAVYEKA---TKAKPAEIGA 63 Query: 64 PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123 R P +L +I Y SA W LA +++ ++ + + G + +HI+ + Sbjct: 64 SRTVPRSLGAVIVAYYSSAAWRGLASSTKRTYGGVIEALREAHGGMPIAGLKREHIKKLI 123 Query: 124 ESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 E + + +A + L+ + +L A+ + NP +V++ K + G WT++++ Sbjct: 124 EKKALEGGACAANRLLSVLGILLDVALDAGLIETNPARTVKKLKHRAIGFHTWTEDEVAA 183 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241 F++ W+ ++ RLAFE LL + R SD + + ++ QKT + + L Sbjct: 184 FRAHWAIETRQRLAFELLLCTAQRSSDVRQMRTAQIAGGCVALSQQKTHAPLRIPLLPEL 243 Query: 242 MKLLAMTP-IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISAD 299 LA P IG ET + + F ++ K AG+ SAHG+RK +A A+ Sbjct: 244 QAALAAAPVIGAETALVTQYGRAFTEKGFGLFIKKACVAAGLTHCSAHGLRKAAARRLAE 303 Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRL 331 AG T H++ A G T+ + E YTK A ++RL Sbjct: 304 AGCTVHQIAAITGHATLREIERYTKEASQLRL 335 >gi|307944703|ref|ZP_07660042.1| putative integrase family protein [Roseibium sp. TrichSKD4] gi|307772130|gb|EFO31352.1| putative integrase family protein [Roseibium sp. TrichSKD4] Length = 392 Score = 122 bits (306), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 93/336 (27%), Positives = 164/336 (48%), Gaps = 23/336 (6%) Query: 14 ERTRHGKIIYYF--RKGHGRRIRLPYPHEST-FIPAYMS----ALTGSTPKREYINSPRK 66 E R +YY RKG GR +R+ P +S+ F P Y AL+ P R Sbjct: 54 EMPRKSGPVYYVQTRKG-GRALRIQSPADSSEFWPEYGRLVGRALSDPGPISPTTACGRH 112 Query: 67 KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126 K + LI+ YR+S + SL N++ ++ ++I G ++R ++ + IR +++ Sbjct: 113 K---IAQLINAYRQSRDFTSLKPNTQKTYSCALNKIADLFGIREFRTLSRQDIRLAMDNM 169 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 +A QFL +R L W ++ Y P ++ + G W++E++ + + Sbjct: 170 PI--YAANQFLQQIRQLNDWCDQRGYTDTFPAAGIKSHGKSRTGFPAWSQEEVDTYLTAH 227 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL-PDGFMKLL 245 G+Q RL + L ++G+R D R G H+++ +I QK G +T+ L PD + + Sbjct: 228 PIGTQARLMIDLLRFTGMRVGDIIRLGPDHIRDGFIAITLQKNGVPVTIPLNPDLEVSID 287 Query: 246 AMTPIGKETFF-INNDKQKMNATQ-FSIWFKAKATKAGVNKSA-------HGVRKFSATI 296 A TP G +TF ++ K+ ++++ F+ F+A AG+ +A HG+RKF+ Sbjct: 288 ATTPDGAKTFLTLDRFKRAFSSSKYFAQTFRAHCRAAGLEGTAARRAVSGHGLRKFALIS 347 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 + G T E A +GW+ + Y++ DR R+G Sbjct: 348 VLENGGTIREAQALFGWRDAAMVQHYSEELDRERVG 383 >gi|310815686|ref|YP_003963650.1| integrase/recombinase [Ketogulonicigenium vulgare Y25] gi|308754421|gb|ADO42350.1| integrase/recombinase [Ketogulonicigenium vulgare Y25] Length = 361 Score = 122 bits (306), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 95/335 (28%), Positives = 155/335 (46%), Gaps = 35/335 (10%) Query: 16 TRHGKIIYYFRKGHGRRIRLP-YPHES-TFIPAYMSALTGSTPKREYINSPRKKPT---T 70 R GK YF++ ++LP P + F+ AY A + + P K P + Sbjct: 19 VRRGKTYRYFQRRGFPLVKLPDLPMDDPAFLRAYAEAKSAN---------PEKSPAAAGS 69 Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130 L+ KS H+ + +R F + D ++ + G+ R + ++HIR+ + P Sbjct: 70 FAALVRAALKSDHYSQSKLATRAMFRRHCDALVEEFGELPARGLRSRHIRANL------P 123 Query: 131 SSAIQF--LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP-WTKEDMQQFKSFWS 187 S Q L + R L + V + N L V PK K++G P WT++++ F++ W Sbjct: 124 KSTSQGHRLRTWRFLCSFGVATNLLERNEALDVAMPKAKSKGGHPPWTQDEIAAFRTRWP 183 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII----TVELPDGFMK 243 GS R AFE L +SG R SD+ R G ++ + + + KT + LPD Sbjct: 184 MGSATRAAFELLRFSGARISDAVRLGPGMVRGGVLTYRQVKTDGPAHIPWSCPLPDFAAH 243 Query: 244 LL--------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSAT 295 L A+ + + +++ + + + A +AG KSAHG+RK AT Sbjct: 244 LSEDRAIMHHALEALAGQMTYLDARGKARSEKSLGTMIREAAMEAGFKKSAHGLRKSLAT 303 Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 A+ GATAH++ A G +T+ + + YTK ADR R Sbjct: 304 ELAEGGATAHQISAWTGHETLKEVDHYTKSADRRR 338 >gi|254559696|ref|YP_003066791.1| phage integrase [Methylobacterium extorquens DM4] gi|254266974|emb|CAX22774.1| phage integrase [Methylobacterium extorquens DM4] Length = 426 Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 89/329 (27%), Positives = 152/329 (46%), Gaps = 9/329 (2%) Query: 10 FVTKERTRHGKIIYYFRKGHGRRIRL-PYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68 FV + RHG + YYFR+ + RL P F+ Y L G P R P Sbjct: 8 FVVSDVDRHGNVRYYFRRRPDPKTRLRGKPGSKIFMETYDRCLAGDAPAATACAEVR--P 65 Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH 128 + + + Y S+ +G+L +++ + G R++ +H+R +SR+ Sbjct: 66 GSFRSVCERYLGSSAFGALDPSTQAWRRRGLEAACEAHGGKLIRRLLARHVRQMRDSRRG 125 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 TP++A L ++R LF WAV + +P V+R + ++G W+ +++ +++ Sbjct: 126 TPAAANTLLKALRALFSWAVEHDLAPGDPTREVKRVRYASKGHHSWSLTEVEAYEAVHPL 185 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL-----PDGFMK 243 G++ RLA LLY+ R D R G +H+ K V + PD Sbjct: 186 GTKARLALALLLYTAGRREDVVRLGPRHVSAGRMRYVQAKNEHRAPVAMDIPIHPDLAEA 245 Query: 244 LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGA 302 + ++ P +F + + + F FK +A + + SAHG RK +A A+ GA Sbjct: 246 IASVPPSSCPSFLETDYGRSFSPNGFGNRFKEWCIQAALPHCSAHGCRKATAARLAERGA 305 Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRL 331 T H++MA G +T+++ E YT+ A R RL Sbjct: 306 TPHQIMAITGHRTLEEVERYTREAQRARL 334 >gi|218528998|ref|YP_002419814.1| integrase family protein [Methylobacterium chloromethanicum CM4] gi|218521301|gb|ACK81886.1| integrase family protein [Methylobacterium chloromethanicum CM4] Length = 426 Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 89/329 (27%), Positives = 152/329 (46%), Gaps = 9/329 (2%) Query: 10 FVTKERTRHGKIIYYFRKGHGRRIRL-PYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68 FV + RHG + YYFR+ + RL P F+ Y L G P R P Sbjct: 8 FVVSDVDRHGNVRYYFRRRPDPKTRLRGKPGSKIFMETYDRCLAGDAPAATACAEVR--P 65 Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH 128 + + + Y S+ +G+L +++ + G R++ +H+R +SR+ Sbjct: 66 GSFRSVCERYLGSSAFGALDPSTQAWRRRGLEAACEAHGGKLIRRLLARHVRQMRDSRRG 125 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 TP++A L ++R LF WAV + +P V+R + ++G W+ +++ +++ Sbjct: 126 TPAAANTLLKALRALFSWAVEHDLAPGDPTREVKRVRYASKGHHSWSLTEVKAYEAVHPL 185 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL-----PDGFMK 243 G++ RLA LLY+ R D R G +H+ K V + PD Sbjct: 186 GTKARLALALLLYTAGRREDVVRLGPRHVSAGRMRYVQAKNEHRAPVAMDIPIHPDLAEA 245 Query: 244 LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGA 302 + ++ P +F + + + F FK +A + + SAHG RK +A A+ GA Sbjct: 246 IASVPPSSGPSFLETDYGRSFSPNGFGNRFKEWCIQAALPHCSAHGCRKATAARLAERGA 305 Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRL 331 T H++MA G +T+++ E YT+ A R RL Sbjct: 306 TPHQIMAITGHRTLEEVERYTREAQRARL 334 >gi|146276197|ref|YP_001166356.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17025] gi|145554438|gb|ABP69051.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17025] Length = 375 Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 95/337 (28%), Positives = 151/337 (44%), Gaps = 7/337 (2%) Query: 9 PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68 P VTK RHGK+ + FRK + LP P+ S A A ++ Sbjct: 16 PGVTKVVDRHGKVRWRFRKKDRADVYLPGPYASAAFRAAYEAAVAGAATPAARSTAAY-- 73 Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH 128 +L WLI Y S + +L+ R D + +G + ++ T+H+ + + ++K Sbjct: 74 GSLAWLIETYLTSPRFQNLSETRRKRLRPDLDWLRENAGKLPFNRLATRHVEA-LMAKKA 132 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYV--AINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 P +A ++ +LF +A++ E NP +R K +G WT ++ QF ++ Sbjct: 133 GPWAANMIKKALSLLFNYAIKNEICDQKHNPATLADRRKVNPDGWHAWTSAEIAQFLAYH 192 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246 EG+ RLA +L +G D R G Q++ + +K+ I E+ L Sbjct: 193 GEGTPQRLACLLILNTGAARGDLIRLGWQNVNGGRIRYRRRKSEVIGDYEILPELAAELR 252 Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAH 305 P + F + N + F+ WFK AG+ + SAHGVRK AT AD+G + Sbjct: 253 HVPPAQMLFLMLNGRP-FKPDSFTDWFKRACVAAGLPHCSAHGVRKGQATNIADSGGSEW 311 Query: 306 ELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342 E+M+ T +A TYTK A+R RL R+S Sbjct: 312 EVMSFLAHATPHEAATYTKKANRGRLADSGLGRLSGA 348 >gi|75674473|ref|YP_316894.1| phage integrase [Nitrobacter winogradskyi Nb-255] gi|74419343|gb|ABA03542.1| phage integrase [Nitrobacter winogradskyi Nb-255] Length = 359 Score = 120 bits (300), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 95/326 (29%), Positives = 158/326 (48%), Gaps = 10/326 (3%) Query: 10 FVTKERTRHGKIIYYFRKGHGRRIRL-PYPHESTFIPAYMSALTGSTP---KREYINSPR 65 + ++ RHG + Y R+ +++RL P F+ Y AL G + + P Sbjct: 17 YTYEDTDRHGNVRIYVRRPGMKKVRLRKTPGTPEFLEEYRDALAGRLELPSDKRPVRVPA 76 Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125 K TL+WL +Y +SA + L ++ D I ++ GD Y + +H+R + Sbjct: 77 GK-GTLRWLCEQYYRSAEYKRLEPRTQHVRRLILDSICKRDGDKPYALMEPRHLRRRRDE 135 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + TP +A + ++R +F +A+ + NP V K +EG W E+++QF+ Sbjct: 136 KSDTPEAANGIVKALRQVFTFALENDLAQRNPAKDVPYLKSGSEGFHSWNIEEVRQFEER 195 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT--IITVELP--DGF 241 S GS+ RLA LLY+G R SD G QH+++ F+ K +T+ +P Sbjct: 196 HSVGSKARLALALLLYTGQRRSDVVALGRQHIRDGWFTFTQVKNRNRKPVTLSIPVRPEL 255 Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADA 300 ++ TP G T+ + + A F WF+ + +AG+ + SAHG+RK +A A+ Sbjct: 256 KAIIDATPSGNLTYLVTAFGKPFTANGFGNWFRERCDEAGLPHCSAHGLRKAAAARLAEL 315 Query: 301 GATAHELMATYGWKTVDQAETYTKGA 326 GA+ E+MA G T + YT+GA Sbjct: 316 GASESEIMAVTGHTTSKEIVRYTRGA 341 >gi|149915062|ref|ZP_01903591.1| Possible integrase/recombinase [Roseobacter sp. AzwK-3b] gi|149811250|gb|EDM71087.1| Possible integrase/recombinase [Roseobacter sp. AzwK-3b] Length = 329 Score = 117 bits (292), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 85/320 (26%), Positives = 153/320 (47%), Gaps = 22/320 (6%) Query: 38 PHESTFIPAYMSALTGSTPKREYINSPRKK----PTTLKWLISEYRKSAH----WGSLAV 89 P F+ Y A G P+ PR++ P +L WLI+++ KS G++ Sbjct: 15 PDHPEFMERYTRARNGKRPE-----IPREEDKAIPQSLSWLIAKFEKSMQERVRAGAMHP 69 Query: 90 NSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVR 149 + +++D++ GD + ++ I +S TP +A + ++R L+ W+V Sbjct: 70 GTLKQRSAFYDRLRAPYGD-KHMEMPRSKIIEIRDSMIATPGAADNMVKALRALYAWSVE 128 Query: 150 QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDS 209 +V NP + + R T G PW+ +D++ FK S+GS LA +++ R SD Sbjct: 129 NGFVRSNPASGIGKINRGT-GATPWSIDDLRAFKDHHSKGSMAHLALTLFMFTACRISDV 187 Query: 210 CRAGVQHL--QNNIFSIKTQ---KTGTIITVELPDGFMKLLAMTPIGKETFFIN-NDKQK 263 G QH + I + Q K +TV + +A + T+ +N + K Sbjct: 188 VILGRQHEIERGGITYLDWQPAKKGSARVTVPILPPLADAIAAQKVVGSTYLLNGHGKPF 247 Query: 264 MNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 +A F WF+ + +AG++ +S HG+RK + + A GAT + +MA +G +E Y Sbjct: 248 ASAAAFGNWFRDRVREAGLDGRSPHGIRKAAGELMALQGATQYHIMAVHGHTQAKTSEGY 307 Query: 323 TKGADRIRLGIKNSRRISSV 342 T+G +R RL + ++++S+ Sbjct: 308 TRGVNRQRLAAEAMQKMASM 327 >gi|168495175|ref|YP_001686913.1| integrase [Azospirillum phage Cd] gi|168148934|emb|CAO99398.1| integrase [Azospirillum phage Cd] Length = 295 Score = 114 bits (284), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 77/269 (28%), Positives = 140/269 (52%), Gaps = 11/269 (4%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129 TL W+I YR S + LA ++ +E+ FD++ + + ++ + +HI + H+ Sbjct: 10 TLGWVIGRYRLSPEYQRLAPATKKIYEAAFDRLHDYAQE-EFSGLRRRHIMRVRDDLAHS 68 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 P++A Q +T++ + ++A+ +E + +P V P+ KT R WT ++ +F + S Sbjct: 69 PATANQVITAIGAVCRFALDREMIETDPSHRV--PRLKTGEWRRWTDAELDKF--YQSAY 124 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM-- 247 R F L++G R +D CRA +Q+ ++ QKTG + + L + LA+ Sbjct: 125 EALRRVFVMALFTGQRRADLCRATWGDIQDGGINVVQQKTGAHLWIPLHPTLERHLAIWK 184 Query: 248 ---TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGAT 303 TP+ T + D+ S F+ +A K G+N + HG+RK +A A+AG + Sbjct: 185 SDATPLPSVTILTSTDRTPWPPQVLSCAFRNEADKLGLNGCNLHGLRKTAAAKLAEAGCS 244 Query: 304 AHELMATYGWKTVDQAETYTKGADRIRLG 332 A ++MA G T+++ E YT+ A++ RL Sbjct: 245 ARQIMAITGHSTMNEVERYTRQAEQRRLA 273 >gi|146276881|ref|YP_001167040.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17025] gi|145555122|gb|ABP69735.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17025] Length = 362 Score = 113 bits (282), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 92/333 (27%), Positives = 158/333 (47%), Gaps = 20/333 (6%) Query: 9 PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHE-STFIPAYMSALTGSTPKREYINSPRKK 67 P+V + T G+I + F K G R LP P + F+ AY +AL + +PR Sbjct: 9 PYV-RPNTVKGRIYWKFEK-DGFRCNLPGPWGFAEFVAAYEAALN-------HAKAPRAS 59 Query: 68 PT---TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124 TL WLI +Y S + +L+ + + + D + ++G + + ++ +H+ + Sbjct: 60 TAIEGTLSWLIEQYLGSLRFQNLSDSRKRTIRHELDWLREQAGRYHFARLEVRHVEK-LM 118 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 ++K P++A +M +L +A ++ Y NP E+ K +G W +E++++F Sbjct: 119 TKKAGPTAANTVKKNMSMLCNFASKKLGYKGPNPAKFAEKLKTNPDGYHTWNEEEVERFL 178 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE-LPDGFM 242 G++ RL L +G+ D R G QH++ + + KT + LP+ + Sbjct: 179 DRHGPGTKARLVILLALNTGMARQDLARVGRQHVKAGRIAYRRGKTSVAADLPILPELAV 238 Query: 243 KLLAMTP--IGKETFFINNDKQKMNATQFSI--WFKAKATKAGVNKSAHGVRKFSATISA 298 +L A + FI DK+ + T S+ WF+ + +A V + HG+RK AT A Sbjct: 239 ELEAALANWSDGQMLFITQDKRPVGYTPESLGNWFRDRCAEANVPGALHGLRKAGATRLA 298 Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 DAGAT E+ + K A Y K A+R RL Sbjct: 299 DAGATEWEIASYLAHKDTKTAAIYVKKANRARL 331 >gi|254559697|ref|YP_003066792.1| phage integrase [Methylobacterium extorquens DM4] gi|254266975|emb|CAX22775.1| phage integrase [Methylobacterium extorquens DM4] Length = 320 Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 83/314 (26%), Positives = 144/314 (45%), Gaps = 14/314 (4%) Query: 47 YMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS 106 Y L G P+R+ + P P + L Y S + SL V++R D+I Sbjct: 4 YYDCLDGKIPERKSRSVP-AAPGSFAALRLAYLGSPEFKSLDVSTRAWQRRALDEISEAH 62 Query: 107 GDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166 G + +H+R+ ++ TP++A L +++ LFKWA + +P +V+ K Sbjct: 63 GTKRVAMMQARHVRTLRNGKRETPAAANTMLKALKALFKWANENGRASSDPTRNVDFLKY 122 Query: 167 KTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-- 224 +G PW+ +++ +++ G+ RLA E LLY+ R D R G +L F Sbjct: 123 AKKGFHPWSPSEVEAYEAAHLVGTTARLALELLLYTAGRREDVVRFGPHNLAAGRFRFVQ 182 Query: 225 --KTQKTGTIITVEL-PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281 + +I + + PD + A P G F + + + F FK +AG Sbjct: 183 GKNEDRAPVLIDIPVHPDLAEAIAAAQPSGA-VFILTHYGRPFTPNGFGNRFKKWCIQAG 241 Query: 282 V-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG------IK 334 + + SAHG RK +A A GATAH++M+ G +++ + E YT+ A R ++ + Sbjct: 242 LPHCSAHGCRKAAAARLATRGATAHQIMSVTGHQSLAEVERYTRSALRAQMADTAMALLP 301 Query: 335 NSRRISSVVDSDDP 348 + R S + ++ P Sbjct: 302 DRRSAGSTIPANRP 315 >gi|92118356|ref|YP_578085.1| phage integrase [Nitrobacter hamburgensis X14] gi|91801250|gb|ABE63625.1| phage integrase [Nitrobacter hamburgensis X14] Length = 359 Score = 110 bits (274), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 89/325 (27%), Positives = 145/325 (44%), Gaps = 16/325 (4%) Query: 6 RLPPFVTKERTRHGKIIYYFRKGHGRRIRLP-YPHESTFIPAYMSAL--TGSTPKREYIN 62 +LPP V + + G + FR G G RI+LP P+ F AY A+ T P Sbjct: 5 KLPPNVERNVVK-GHVYLSFRVGKGPRIKLPPDPNSDEFRAAYAEAIGKTSQAP------ 57 Query: 63 SPRKKPT-TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121 +P K ++ LI Y S + +L S+ + S DQ+ ++ G +T + I++ Sbjct: 58 TPAKAAERSIGALIIRYLSSTAFKALRNTSKQGYRSRIDQMRKEHGHRSVSGLTKERIQT 117 Query: 122 GV-ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 + + TP +A+ L +R+L + A E++ +P ++RPK K IR WT + Sbjct: 118 QILDPLADTPGAALDTLKKLRILIRHARDIEWLNTDPSDGIKRPKSKE--IRSWTDSECT 175 Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240 F+ W G++ R A+E +L G +D R + F QKTG + + + Sbjct: 176 AFEKRWKVGTRQRAAYELMLNVGTARADVHRVTWNQFDEDNFEYSRQKTGVEVAMTMAKR 235 Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISA 298 + P T + FS + + AG+ + HG+RK A Sbjct: 236 CRDAVYALPRKHITVLNTEFGKPFTVDGFSGFMRDAIKAAGLPLDCRPHGLRKTLGRRLA 295 Query: 299 DAGATAHELMATYGWKTVDQAETYT 323 D G +AH++MA G T+ +AE YT Sbjct: 296 DRGVSAHDIMAALGHTTLGEAERYT 320 >gi|260431275|ref|ZP_05785246.1| phage integrase [Silicibacter lacuscaerulensis ITI-1157] gi|260415103|gb|EEX08362.1| phage integrase [Silicibacter lacuscaerulensis ITI-1157] Length = 373 Score = 109 bits (272), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 92/340 (27%), Positives = 165/340 (48%), Gaps = 12/340 (3%) Query: 10 FVTKERTRHGKIIYYFRKGHGRRIRLPYPHES-TFIPAYMSALTGSTPKREYIN-SPRKK 67 +V ++ RHG + Y+R+ +GR++RL P S F+ Y +A G PK + + R Sbjct: 12 YVVEDVDRHGNVRLYYRR-NGRKVRLRGPAGSPEFLADYRTAAAG--PKEAKTDKAGRVV 68 Query: 68 PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD--YRKITTKHIRSGVES 125 P + +WL +Y KSA + L ++ S ++ GD D + ++ +HIR + Sbjct: 69 PKSFRWLCVQYFKSAMFQELDPRTQKVRRSILERFCEHKGDGDKPFAQLLPRHIRVRRDE 128 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 P +A + ++R L+++A+R ++ NP VE K +G WT ++++++ Sbjct: 129 MADRPEAANGMVKAVRQLYRYALRYDHHDDNPAEKVEYLKGNPDGFHSWTLAEIEKYEEA 188 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN--IFSIKTQKTGTIITVELP--DGF 241 G+ RLA LY+G R +D G QH+++ IF+ + + +E+P Sbjct: 189 HPIGTPARLALALALYTGQRRADLVVLGKQHVRDGWLIFTQHKGRNRKPVRMEIPVIPEL 248 Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADA 300 +++ TP G TF + + + F F+ AG+ + S HG+RK +A A+ Sbjct: 249 QQIIDATPTGDLTFLVTAFNRPFTSNGFGNRFRKWCDDAGLPQCSVHGLRKAAAARLAEL 308 Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340 G T E+M+ G +T + YT+ A + RR+S Sbjct: 309 GCTEQEIMSITGHRTSKEVTRYTRAASQKTRAESALRRLS 348 >gi|89070660|ref|ZP_01157933.1| phage integrase [Oceanicola granulosus HTCC2516] gi|89043740|gb|EAR49943.1| phage integrase [Oceanicola granulosus HTCC2516] Length = 375 Score = 107 bits (267), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 98/351 (27%), Positives = 162/351 (46%), Gaps = 11/351 (3%) Query: 5 LRLPPFVTKERTRHGKI-IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY-IN 62 LRL +V ++ RHG + +YY R G R+R P F+ Y A G R + Sbjct: 8 LRLK-YVVEDVDRHGNVRLYYRRNGTKTRLRGPV-GSPEFLIDYRRAAAGPKEVRGHKAR 65 Query: 63 SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII--RKSGDFDYRKITTKHIR 120 R P +LKWL +Y KSA + L ++ S ++ + GD + + +HIR Sbjct: 66 VGRVVPRSLKWLCVQYYKSAMFTELDPRTQKVRRSILERFCEHKNDGDKPFALLLPRHIR 125 Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 + P +A + ++R L+++A+R ++ NP VE K + +G WT +++ Sbjct: 126 VRRDEMADRPEAANGMVKALRQLYRYALRYDHHDDNPADKVEYLKGEPDGFHSWTLAEIK 185 Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN--IFSIKTQKTGTIITVELP 238 +F+ GS RLA LY+G R +D G QH+++ IF+ + + +E+P Sbjct: 186 KFEDAHPVGSPARLALALALYTGQRRADLVTLGKQHVRDGWLIFTQHKGRNRKPVRLEIP 245 Query: 239 --DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSAT 295 +++ TP G F + + + F F+ AG+ N S HG+RK +A Sbjct: 246 VIPELQRIIDATPTGDLNFLVTAFNRPFTSNGFGNRFRKWCDDAGLPNCSVHGLRKAAAA 305 Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSD 346 A+ G T E+MA G T + YT+ A + RR + +SD Sbjct: 306 RLAELGCTEQEIMAITGHATSKEVTRYTRAASQKTRAESALRRFTEEQNSD 356 >gi|294677620|ref|YP_003578235.1| phage integrase [Rhodobacter capsulatus SB 1003] gi|294476440|gb|ADE85828.1| phage integrase [Rhodobacter capsulatus SB 1003] Length = 356 Score = 107 bits (267), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 75/260 (28%), Positives = 125/260 (48%), Gaps = 27/260 (10%) Query: 95 FESYFDQIIRKSGDFD----------YRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLF 144 S + I+RK DFD + + ++HI + ++ K + +A + L + R + Sbjct: 78 LSSLYQSILRK--DFDAMEAAYGTAPLKGLRSRHIEADLD--KLSADAANKRLKAWRRVM 133 Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGL 204 A R+ + +P + V R K KTEG WT+++++QF++ W G+ R FE + ++G Sbjct: 134 GGARRRGEIESDPSIEVRRIKVKTEGFPAWTQDEVEQFRARWPIGTVQRACFELVCWTGA 193 Query: 205 RCSDSCRAGVQHL-QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF-------- 255 R +D+ R G ++ + S + KT V + A +ET Sbjct: 194 RTNDAVRLGPCNIDHGGVLSYRQSKTANPAMVPWSNPLPGYAAAWAAERETVKAALACLS 253 Query: 256 ----FINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATY 311 F+ + + + A AGV KSAHG+RK+ T A+AG +AH +MA Sbjct: 254 GGFTFLEANGRVRSVKGLGNVISEAARGAGVEKSAHGLRKYRLTAIAEAGGSAHAIMAWG 313 Query: 312 GWKTVDQAETYTKGADRIRL 331 G +T+ +AE YT+ ADR RL Sbjct: 314 GHQTLVEAEHYTRAADRRRL 333 >gi|3128300|gb|AAC16152.1| integrase/recombinase [Rhodobacter capsulatus SB 1003] Length = 344 Score = 106 bits (265), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 75/260 (28%), Positives = 125/260 (48%), Gaps = 27/260 (10%) Query: 95 FESYFDQIIRKSGDFD----------YRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLF 144 S + I+RK DFD + + ++HI + ++ K + +A + L + R + Sbjct: 66 LSSLYQSILRK--DFDAMEAAYGTAPLKGLRSRHIEADLD--KLSADAANKRLKAWRRVM 121 Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGL 204 A R+ + +P + V R K KTEG WT+++++QF++ W G+ R FE + ++G Sbjct: 122 GGARRRGEIESDPSIEVRRIKVKTEGFPAWTQDEVEQFRARWPIGTVQRACFELVCWTGA 181 Query: 205 RCSDSCRAGVQHL-QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF-------- 255 R +D+ R G ++ + S + KT V + A +ET Sbjct: 182 RTNDAVRLGPCNIDHGGVLSYRQSKTANPAMVPWSNPLPGYAAAWAAERETVKAALACLS 241 Query: 256 ----FINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATY 311 F+ + + + A AGV KSAHG+RK+ T A+AG +AH +MA Sbjct: 242 GGFTFLEANGRVRSVKGLGNVISEAARGAGVEKSAHGLRKYRLTAIAEAGGSAHAIMAWG 301 Query: 312 GWKTVDQAETYTKGADRIRL 331 G +T+ +AE YT+ ADR RL Sbjct: 302 GHQTLVEAEHYTRAADRRRL 321 >gi|315122001|ref|YP_004062490.1| phage-related integrase/recombinase [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495403|gb|ADR52002.1| phage-related integrase/recombinase [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 102 Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 47/80 (58%), Positives = 62/80 (77%) Query: 40 ESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF 99 E F+PAY+SAL+G ++ YI +K+P TL+W IS+YRKSAHW SL +NSR + YF Sbjct: 22 EPNFMPAYLSALSGIPIEQGYIKPQKKEPQTLRWFISQYRKSAHWASLTLNSRKRLDLYF 81 Query: 100 DQIIRKSGDFDYRKITTKHI 119 DQII+KSGDF Y+K+T+KHI Sbjct: 82 DQIIKKSGDFYYKKLTSKHI 101 >gi|221641161|ref|YP_002527423.1| Integrase/recombinase [Rhodobacter sphaeroides KD131] gi|221161942|gb|ACM02922.1| Integrase/recombinase [Rhodobacter sphaeroides KD131] Length = 353 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 89/352 (25%), Positives = 158/352 (44%), Gaps = 30/352 (8%) Query: 14 ERTRHG-KIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72 +R R G +++ Y R R LP H P +++A + + + P + K Sbjct: 7 QRIRRGDRVLCYHRPTGTRLPDLPETH-----PEFVAAWAKAEATKPDLAPPVADKSVAK 61 Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132 ++ R S W A + R+S + ++I + G R + KH+ ++ K P+ Sbjct: 62 -VVRALRASKRWKGFAASYRLSLRFHLERIETEHGTLPLRGLRQKHVE--MDLGKLDPNP 118 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192 L R++F A + +P + + K+ G WT ++ F++ W+ G++ Sbjct: 119 RNVSLKCWRLIFAQAKADGIIESDPSHEIGKLVTKSPGHVAWTTAEVAAFRARWAVGTRQ 178 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHL-QNNIFSIKTQKTGTII----TVELPDGFMKL--- 244 R AFE L ++G R SD+CR H+ + + + + QKTG + T LP ++ Sbjct: 179 RAAFELLAWTGCRVSDACRMTRTHIGSDGLMTFRQQKTGGLAYVPWTCALPSWALRWEEE 238 Query: 245 -----LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISA 298 A+ T + + + S + A A +AG+ ++ HG+RKF T A Sbjct: 239 RETVRAAVMATAGFTLLETSYGKARSVKGLSNFITAAAAEAGIEGRTPHGLRKFRLTAIA 298 Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADR--IRLGIKNSRRISSVVDSDDP 348 +AG AH +MA G ++ +AE YT+ A R + +G + R D +DP Sbjct: 299 EAGGPAHAIMAWGGHASLSEAEAYTRAASRRGLVMGPEQERN-----DVNDP 345 >gi|77462207|ref|YP_351711.1| integrase/recombinase [Rhodobacter sphaeroides 2.4.1] gi|77386625|gb|ABA77810.1| Integrase/recombinase [Rhodobacter sphaeroides 2.4.1] Length = 348 Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 89/352 (25%), Positives = 157/352 (44%), Gaps = 30/352 (8%) Query: 14 ERTRHG-KIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72 +R R G +++ Y R R LP H P +++A + + + P + K Sbjct: 2 QRIRRGDRVLCYHRPTGTRLPDLPETH-----PDFIAAWAKAEASKPDLAPPVADKSVAK 56 Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132 ++ R S W A + R++ + ++I + G R + KH+ ++ K P+ Sbjct: 57 -VVRALRASKRWKGFAASYRLNLRFHLERIETEHGALPLRGLRQKHVE--MDLGKLDPNP 113 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192 L R++F A + +P + + K+ G WT ++ F++ W+ G++ Sbjct: 114 RNVSLKCWRLIFAQAKADGIIESDPSHEIGKIVTKSPGHVAWTTAEVAAFRARWAVGTRQ 173 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHL-QNNIFSIKTQKTGTII----TVELPDGFMKL--- 244 R AFE L ++G R SD+CR HL + + + + QKTG T LP ++ Sbjct: 174 RAAFELLAWTGCRVSDACRMTRTHLGSDGLMTFRQQKTGGPAYVPWTCALPSWALRWEEE 233 Query: 245 -----LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISA 298 A+ T + + + S + A A +AG+ ++ HG+RKF T A Sbjct: 234 RETVRAAVMATAGFTLLETSYGKARSVKGLSNFITAAAAEAGIEGRTPHGLRKFRLTAIA 293 Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADR--IRLGIKNSRRISSVVDSDDP 348 +AG AH +MA G ++ +AE YT+ A R + +G + R D +DP Sbjct: 294 EAGGPAHAIMAWGGHASLSEAEAYTRAASRRGLVMGPEQERN-----DVNDP 340 >gi|77462632|ref|YP_352136.1| putative tyrosine recombinase [Rhodobacter sphaeroides 2.4.1] gi|77387050|gb|ABA78235.1| Putative Tyrosine recombinase [Rhodobacter sphaeroides 2.4.1] Length = 341 Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 83/328 (25%), Positives = 147/328 (44%), Gaps = 18/328 (5%) Query: 15 RTRHGKIIYYFRKGHGRRIRLPYPHE-STFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73 R R G +Y + RR R P + P +++A + + S R + T+ Sbjct: 7 RVRRGGTVYKYH----RRTRKELPRDVPEDDPRFVAAWLAEEQRAPTVRS-RSQAGTIAA 61 Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133 Y S + L+ R + ++I + + + +HIR+ +E +P A Sbjct: 62 ACEAYLGSRSYRELSDGYRPVIRRHVERIKEQGEKALLKDLLPRHIRADLEP--LSPPVA 119 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR-KTEGIRPWTKEDMQQFKSFWSEGSQP 192 L + R L ++ + + + +P V+R K K G WT ED++ F++ W G+ Sbjct: 120 SSRLKAWRKLAEFWLLKGMLDADPSEGVKRKKMGKVAGFTEWTAEDLEAFRARWPIGTAQ 179 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHL-QNNIFSIKTQKTG-------TIITVELPDGFMKL 244 RLA E ++G RC D R G Q + ++ + + QKTG T L + L Sbjct: 180 RLALELYQWTGARCVDVIRLGPQMVGRDGVLTYVQQKTGNPAHVPWTCPAFGLEEQRADL 239 Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGAT 303 + P+G + + + S WF A A +AG+ +++AHG+RK+ A+ GA+ Sbjct: 240 MRCLPVGSPVYMLTEYGKPRTQKGVSQWFSAAAREAGLESRTAHGLRKYRMNALAEHGAS 299 Query: 304 AHELMATYGWKTVDQAETYTKGADRIRL 331 + + G T+ + + YT+ ADR R+ Sbjct: 300 VLVMQSWVGHTTLLEVQEYTRRADRRRV 327 >gi|222148446|ref|YP_002549403.1| phage-related integrase [Agrobacterium vitis S4] gi|221735434|gb|ACM36397.1| phage-related integrase [Agrobacterium vitis S4] Length = 343 Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 82/322 (25%), Positives = 150/322 (46%), Gaps = 16/322 (4%) Query: 31 RRIRL-PYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAV 89 +RIR+ P + F Y A G P S KP ++ WL+ Y + V Sbjct: 18 QRIRIFCLPGDEDFSRQYTLARYGEQPVPLKKASEVVKPRSIGWLVHSY---FEYMEQRV 74 Query: 90 NSRIS----FESYFDQIIRKSGDFDYRKITTK-HIRSGVESRKHTPSSAIQFLTSMRVLF 144 +R+S + + + R D D I + + + TP+ A F+ S+ V++ Sbjct: 75 KARLSSAKTLKKKRNLLARLIEDPDRIMIIPQPKLIEMQDKMASTPAQADAFIESISVMY 134 Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGL 204 +WA+++ ++ NP ++R +K +G PW D+++F ++ GS+P +A LL++G Sbjct: 135 EWAIKRGHLKTNPAKGIDRIYKKGDGATPWKSADVKRFFAYHKPGSKPFIAMSILLWTGC 194 Query: 205 RCSDSCRAGVQH--LQNNIFSIK---TQKTGTIITVELPDGFMKLLAMTPIGKETFFI-N 258 R D G +H + + + +++ +K + +T+ L + + ET+ + Sbjct: 195 RIEDLTFLGPRHECILDGLEALRWVPAKKGSSEVTIPLLKPLKAAIHSQAVIAETYIVAR 254 Query: 259 NDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVD 317 +K + S FK AG+N SAHGVRK A + A+ G + +E+MA G Sbjct: 255 GNKPFASGDSMSAMFKRWCIDAGLNHLSAHGVRKGLAELLAEQGCSQYEIMAILGHSEAK 314 Query: 318 QAETYTKGADRIRLGIKNSRRI 339 +E YT+ +R +L + R+ Sbjct: 315 TSEVYTRRVERWKLAQQAMDRL 336 >gi|315122579|ref|YP_004063068.1| phage-related integrase/recombinase [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495981|gb|ADR52580.1| phage-related integrase/recombinase [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 78 Score = 99.8 bits (247), Expect = 6e-19, Method: Composition-based stats. Identities = 44/73 (60%), Positives = 56/73 (76%) Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKE 253 +AFE LY+GLRCSD CR QH + N+FSI+TQK TI+TVELP+ +KLL +TP GKE Sbjct: 1 MAFELCLYTGLRCSDVCRVSRQHFKGNVFSIQTQKVWTIVTVELPEIVIKLLEITPTGKE 60 Query: 254 TFFINNDKQKMNA 266 TF +N +K+KM A Sbjct: 61 TFIVNREKEKMIA 73 >gi|221638486|ref|YP_002524748.1| Tyrosine recombinase [Rhodobacter sphaeroides KD131] gi|221159267|gb|ACM00247.1| Tyrosine recombinase [Rhodobacter sphaeroides KD131] Length = 313 Score = 97.4 bits (241), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 75/297 (25%), Positives = 135/297 (45%), Gaps = 13/297 (4%) Query: 45 PAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR 104 P +++A + + S R + T+ Y S + L+ R + ++I Sbjct: 6 PRFVAAWLAEEQRAPTVRS-RSQAGTIAAACEAYLGSRSYRELSDGYRPVIRRHVERIKE 64 Query: 105 KSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP 164 + + + +HIR+ +E +P A L + R L ++ + + + +P V+R Sbjct: 65 QGEKALLKDLLPRHIRADLEP--LSPPVASSRLKAWRKLAEFWLLKGMLDADPSEGVKRK 122 Query: 165 KR-KTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL-QNNIF 222 K K G WT ED++ F++ W G+ RLA E ++G RC D R G Q + ++ + Sbjct: 123 KMGKVAGFTEWTAEDLEAFRARWPIGTAQRLALELYQWTGARCVDVIRLGPQMVGRDGVL 182 Query: 223 SIKTQKTG-------TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKA 275 + QKTG T L + L+ P+G + + + S WF A Sbjct: 183 TYVQQKTGNPAHVPWTCPAFGLEEQRADLMRCLPVGSPVYMLTEYGKPRTQKGVSQWFSA 242 Query: 276 KATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 A +AG+ ++AHG+RK+ A+ GA+ + + G T+ + + YT+ ADR R+ Sbjct: 243 AAREAGLEGRTAHGLRKYRMNALAEHGASVLVMQSWVGHTTLLEVQEYTRRADRRRV 299 >gi|260432502|ref|ZP_05786473.1| phage integrase family protein [Silicibacter lacuscaerulensis ITI-1157] gi|260416330|gb|EEX09589.1| phage integrase family protein [Silicibacter lacuscaerulensis ITI-1157] Length = 353 Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 88/337 (26%), Positives = 150/337 (44%), Gaps = 25/337 (7%) Query: 15 RTRHGKIIYYFRKGHGRRIRLPYPHES-TFIPAYMSALTGSTPKREYIN-SPRKKPTTLK 72 R + +Y + + G R+ P + F+ AY+ A + + K+ SPR Sbjct: 6 RVKQDGKVYRYHRATGTRLPDGIPEDHPDFLAAYLKAESQTGQKKPRRGASPRAGTVAHA 65 Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132 W ++ KS + L+ R ++ D I+ K G +I HI + ++ ++ Sbjct: 66 WW--QFTKSDAFLDLSEGYRRRMMAHGDDIVAKGGKVPIDQIRAYHIENDIQDMDR--NA 121 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK-RKTEGIRPWTKEDMQQFKSFWSEGSQ 191 A L + R WA + V N V+ PK +K + W+ + + F++ W + Sbjct: 122 ARTRLKAWRKFLDWA-QPRLVERNWAKLVDMPKAKKGTPHKRWSADHVAAFRNRWPVDTP 180 Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHL-QNNIFSIKTQKTGTIITV----ELP---DG--- 240 RLAFE +L++G+R D+ R G + ++ + K +KTG + +LP D Sbjct: 181 QRLAFELMLFTGMRICDAVRCGPGWIDRDGWMTFKQKKTGGDALIAFNRDLPPFADAEAR 240 Query: 241 --FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN----KSAHGVRKFSA 294 + L TF + S WF A KAG+ ++AHG+R Sbjct: 241 AYLSECLNARTERHMTFLATIHGTSRSEKAASNWFSDAARKAGLKGDQRRTAHGLRDTCC 300 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 A+ GATAH+LM G +++++AE YTK AD+ R+ Sbjct: 301 ARLAEGGATAHQLMTWSGHESLEEAERYTKDADKKRM 337 >gi|146276876|ref|YP_001167035.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17025] gi|145555117|gb|ABP69730.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17025] Length = 294 Score = 93.2 bits (230), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 68/264 (25%), Positives = 127/264 (48%), Gaps = 7/264 (2%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133 +I +Y S + +L+ + + + D + ++G + + ++ +H+ + ++K P++A Sbjct: 1 MIEQYLGSLRFQNLSDSRKRTIRHELDWLREQAGRYHFARLEVRHVEK-LMTKKAGPTAA 59 Query: 134 IQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192 +M +L+ +A ++ Y NP E+ K +G W +E++++F G++ Sbjct: 60 NTVKKNMSMLYNFASKKLGYKGPNPAKFAEKLKTNPDGYHTWNEEEVERFLDRHGPGTKA 119 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE-LPDGFMKLLAMTP-- 249 L L +G+ D R G QH++ + + KT + LP+ ++L A Sbjct: 120 HLVILLALNTGMARQDLARVGRQHVKAGRIAYRRGKTSVAADLPILPELAVELEAALANW 179 Query: 250 IGKETFFINNDKQKMNATQFSI--WFKAKATKAGVNKSAHGVRKFSATISADAGATAHEL 307 + FI DK+ + T S+ WF+ + +A V + HG+RK AT ADAGAT E+ Sbjct: 180 SDGQMLFITQDKRPVGYTPESLGNWFRDRCAEANVPGALHGLRKAGATRLADAGATEWEI 239 Query: 308 MATYGWKTVDQAETYTKGADRIRL 331 + K A Y K A+R RL Sbjct: 240 ASYLAHKDTKTAAIYVKKANRARL 263 >gi|260462715|ref|ZP_05810921.1| integrase family protein [Mesorhizobium opportunistum WSM2075] gi|259031621|gb|EEW32891.1| integrase family protein [Mesorhizobium opportunistum WSM2075] Length = 432 Score = 92.4 bits (228), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 90/366 (24%), Positives = 155/366 (42%), Gaps = 34/366 (9%) Query: 9 PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTG-STPKREYINSPRKK 67 P ++ RHGK+ + +R R + LP P + F AY +A+ G PK + P Sbjct: 6 PGLSSYTDRHGKLRWRYRTKE-RVVSLPAPTQPGFKDAYQAAVEGRKVPKAPVVRMPGSA 64 Query: 68 -PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ--IIRKSGD--FDYRKITTK----- 117 P T + S W +L S+ + ++ ++R D +R + K Sbjct: 65 LPGTFGAAFQRLKISVKWLALDEASKRKNKRLIEEFLVLRVVPDHPLIWRDVPVKNLRRI 124 Query: 118 HIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE-RPKRKTEGIRPWTK 176 HI + TP A L +R L A+RQ+++ I+P +VE RP G + W++ Sbjct: 125 HIEELLGRFIATPHKAKHLLVGIRKLVYVALRQDWIEIDPTAAVEWRPA--YAGWKAWSR 182 Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSC----------RAGVQHLQNNI--FSI 224 E M QF++ W G+ R + L+ G R D R + ++ + F I Sbjct: 183 EAMAQFENRWQLGTAARTCYGLALWLGNRRGDVAGLRWDQRVTRRVFIDGVERHFDGFDI 242 Query: 225 -----KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK 279 K + G + V + ++L ET +N + +A + Sbjct: 243 VQGKNKGRTGGKRLFVPITPMLSEILDAADRRGETVLVNAYGEPFSAKSLTGMMAHWCKL 302 Query: 280 AGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 AG+ K + HG+RK A+A A+ ++M G +D AE Y++ A ++RL ++ Sbjct: 303 AGLPKGLTLHGLRKSLGVYLAEAEASTRQMMDVLGHDDIDHAELYSREASQVRLAVQGMD 362 Query: 338 RISSVV 343 R+ +V Sbjct: 363 RVVRLV 368 >gi|299133965|ref|ZP_07027159.1| integrase family protein [Afipia sp. 1NLS2] gi|298591801|gb|EFI52002.1| integrase family protein [Afipia sp. 1NLS2] Length = 169 Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 48/133 (36%), Positives = 70/133 (52%) Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF 255 F+ LY+GLR D+ R G QH+++ I ++ T+KTG +T+ + L P G F Sbjct: 2 FDIFLYTGLRRGDAARLGRQHVRDGIITLDTEKTGVRVTLPVLPELQATLDAGPTGDLAF 61 Query: 256 FINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKT 315 M F+ AGV KSAHG+RK +AT +A+ GAT +L A +GW+ Sbjct: 62 IATASGNPMAKESVGTLFREACLAAGVRKSAHGLRKAAATNAANHGATVAQLEAIFGWEG 121 Query: 316 VDQAETYTKGADR 328 A YT+ A+R Sbjct: 122 GRMASLYTRSANR 134 >gi|126737075|ref|ZP_01752810.1| Integrase [Roseobacter sp. SK209-2-6] gi|126721660|gb|EBA18363.1| Integrase [Roseobacter sp. SK209-2-6] Length = 332 Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 83/325 (25%), Positives = 141/325 (43%), Gaps = 16/325 (4%) Query: 10 FVTKERTRHGKIIYYFRKGHGRRIRLPY-PHESTFIPAYMSALTGSTPKREYINSPRKKP 68 F T +R + G++ YFRK GR +RLP P+ + Y + G + Sbjct: 6 FTTTKRVK-GRLYQYFRK-DGRYVRLPDDPNSEEYDREYWRLMRGGGALSQRF------- 56 Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH 128 T + LI Y++S W LA ++ + + + G D K+ I + KH Sbjct: 57 -TFEKLIQSYKRSPRWEGLAPRTKADYSKVLEYLAGTIGQKDPTKMRRSTIIEAQMANKH 115 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 A + +LF+ AV ++ NP +E+ K EG +PW K + F+ + Sbjct: 116 RARFANYIPHMLSILFEHAVDLDWQRDNPAKGIEKIK-TGEGHKPWPKPAVATFRK--NV 172 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT 248 RLAFE L +G R SD R ++++ + KTG + + D +L T Sbjct: 173 RGLERLAFELALGTGQRASDLTRMKWSDIEDDGIWVTQGKTGVRLWIPFTDSLRAILDET 232 Query: 249 PIGKETFFINNDKQKMNATQF--SIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHE 306 P + +++D + + + KA+ HG+R +A A+AG T H+ Sbjct: 233 PRKSLHWILSDDFGRQLGYDYIQKKFLKARKELGLEGYGFHGLRYSAAGELAEAGCTDHQ 292 Query: 307 LMATYGWKTVDQAETYTKGADRIRL 331 + A G K++ + Y+K A++ RL Sbjct: 293 IAAITGHKSLSMIQKYSKSANQKRL 317 >gi|326385719|ref|ZP_08207348.1| integrase family protein [Novosphingobium nitrogenifigens DSM 19370] gi|326209698|gb|EGD60486.1| integrase family protein [Novosphingobium nitrogenifigens DSM 19370] Length = 359 Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 79/324 (24%), Positives = 142/324 (43%), Gaps = 2/324 (0%) Query: 7 LPPFVTKERTRHGKIIYYFR-KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65 LP +V+ R RHGK Y FR KG + + P F Y + LT S + + + Sbjct: 6 LPKWVSGFRDRHGKARYRFRRKGQAQYLFKHAPGTEEFRQEYQACLTASEAPKIQPGADK 65 Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125 KP T LI Y +S + + +++ + ++ K G + T+H+ + + Sbjct: 66 IKPGTFDDLIVRYYRSPDFLDPSPRTQVVYRGVIERWRAKYGSGRVADLETRHVAAMMAE 125 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 +SA + L +A RQ + NP L+ + + G WT+ ++ +++ Sbjct: 126 MLPHRTSANMLRKRLSALMAFANRQGEIDKNPVLATKPYRIDGGGFHTWTEPEIALYEAH 185 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245 G+ RL F+ LL++G R D G +Q+ I +KT +++ + + + Sbjct: 186 HPTGTMARLMFDLLLWTGQRGGDVRLLGPNAIQDKRLVITQEKTKVTVSLPILPALAQSI 245 Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATA 304 T G++TF + + F F+ AG+ + SAHG+RK +A A+A + Sbjct: 246 LATQTGEDTFLVTTHGKTFTRKGFGNKFRDWCDAAGLPHCSAHGLRKAAARRFAEARCSN 305 Query: 305 HELMATYGWKTVDQAETYTKGADR 328 ++ A G T + YT D+ Sbjct: 306 QQIKAWTGHTTDSEIARYTAAVDQ 329 >gi|119383712|ref|YP_914768.1| phage integrase family protein [Paracoccus denitrificans PD1222] gi|119373479|gb|ABL69072.1| phage integrase family protein [Paracoccus denitrificans PD1222] Length = 359 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 92/337 (27%), Positives = 150/337 (44%), Gaps = 25/337 (7%) Query: 13 KERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK-KPT-T 70 + + R K+I Y R IRLP T P ++SA + ++P+ PT + Sbjct: 7 RRQKRGDKVIRYHR---ATGIRLPDDIPETH-PDFVSAWARCEAGQGQPDAPKAPAPTGS 62 Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130 L +R S + + R + I + G + I KHI + + K Sbjct: 63 LAAACIAFRGSPSFKEQSPVYRDILTRNIEAIRGEYGHVAIKAIKAKHISADLA--KLAG 120 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 + + L + R + A R + +P L+V+ PK K +G + WT+ D++ F+ W G+ Sbjct: 121 TRPLSRLKTWRKVMDHARRTGLIEEDPSLTVKAPKVKLKGHQVWTEGDIEVFRGKWKIGT 180 Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHL-QNNIFSIKTQKTGTII----TVELPD------ 239 R FE LL++ R D+ R G QH+ ++ + S + KTG + T LP+ Sbjct: 181 VQRACFELLLWTAARTVDAVRIGPQHVGKDGVLSFRQSKTGGMAYVPWTATLPNWGAGWA 240 Query: 240 ----GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSA 294 M+ L G TF + + S A A +A + ++AHG+RK Sbjct: 241 DERREMMEALRCL-AGGLTFLQARGARPRSEKGLSNLISAAAREAKLEGRTAHGLRKARL 299 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 T A+AG +AH + + G KT+ +A YT+ AD RL Sbjct: 300 TRIAEAGGSAHAIKSWGGHKTLAEAAHYTESADAKRL 336 >gi|46205283|ref|ZP_00209783.1| COG0582: Integrase [Magnetospirillum magnetotacticum MS-1] Length = 300 Score = 90.1 bits (222), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 63/219 (28%), Positives = 108/219 (49%), Gaps = 6/219 (2%) Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 +R +SR+ TP++A L ++R LF WAV + +P V+R + ++G W+ + Sbjct: 1 MRQMRDSRRGTPAAANTLLKALRALFSWAVEHDLAPGDPTREVKRVRYASKGHHSWSLTE 60 Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL- 237 ++ +++ G++ RLA LLY+ R D R G +H+ K V + Sbjct: 61 VEAYEAVHPLGTKARLALALLLYTAGRREDVVRLGPRHVSAGRMRYVQAKNEHRAPVAMD 120 Query: 238 ----PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKF 292 PD + ++ P +F + + + F FK +A + + SAHG RK Sbjct: 121 IPIHPDLAEAIASVPPSSCPSFLETDYGRSFSPNGFGNRFKEWCIQAALPHCSAHGCRKA 180 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 +A A+ GAT H++MA G +T+++ E YT+ A R RL Sbjct: 181 TAARLAERGATPHQIMAITGHRTLEEVERYTREAQRARL 219 >gi|119385371|ref|YP_916427.1| phage integrase family protein [Paracoccus denitrificans PD1222] gi|119375138|gb|ABL70731.1| phage integrase family protein [Paracoccus denitrificans PD1222] Length = 335 Score = 90.1 bits (222), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 63/265 (23%), Positives = 116/265 (43%), Gaps = 6/265 (2%) Query: 67 KPTTLKWLISEYRKSAHWGSL---AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123 K T W + Y S +W L + +R + ++ + +R G+ IT + I + + Sbjct: 63 KSGTFAWAVDLY-TSGNWKWLNEYSEGTRKARQAILKRYVRAQGNRPLSAITPRDIENAL 121 Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 ++ A+ ++R +F+ R ++ NP + +E + + + +D+ F Sbjct: 122 YAKGG--HGAVNDFKALRPVFEHVKRLGFITRNPMIGIELDRPMSNELPTADADDIAAFI 179 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243 W G+ RL F+ LY+G +D G +++ N+ KTG V + Sbjct: 180 KRWEVGTVERLIFDLGLYTGAARADLAVIGRHNIKGNVLIFNRVKTGVPSYVPITPELRA 239 Query: 244 LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGAT 303 ++A TP TF ++ ++ F+ A AG+ HG+RK A+ G T Sbjct: 240 VIARTPDISPTFILSKWRKPYQPQSLGQRFEEAAVAAGMKARLHGLRKAFCVYWAENGKT 299 Query: 304 AHELMATYGWKTVDQAETYTKGADR 328 H++ A G T+ + E YT+ ADR Sbjct: 300 VHQIAAMAGHLTLKEVERYTRAADR 324 >gi|315122637|ref|YP_004063126.1| integrase family protein [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313496039|gb|ADR52638.1| integrase family protein [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 102 Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 41/98 (41%), Positives = 60/98 (61%) Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFL 199 M V+FKWAV + V NP V R KT+G WT E ++QF+ + G + LA E + Sbjct: 1 MAVVFKWAVSRGLVKSNPTSGVSRQPWKTKGFHTWTIEQIEQFRKYHPIGKKASLALEMM 60 Query: 200 LYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL 237 L+ GLR SD R G+QH+++ + SI+TQKTG + + + Sbjct: 61 LFLGLRRSDVMRVGIQHIKDEVMSIETQKTGVYVHIPI 98 >gi|119386802|ref|YP_917857.1| phage integrase family protein [Paracoccus denitrificans PD1222] gi|119377397|gb|ABL72161.1| phage integrase family protein [Paracoccus denitrificans PD1222] Length = 335 Score = 87.4 bits (215), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 78/323 (24%), Positives = 138/323 (42%), Gaps = 16/323 (4%) Query: 7 LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66 LP +V + R +Y+ R G +R+ P + F Y + G P +P++ Sbjct: 5 LPAYVYAKGKR--GYLYFCRWGKTQRM-YAAPGTAEFAAEYALLMRGRPP------APKR 55 Query: 67 KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126 T+K LI +Y +S W +LA N++ S+ +F + +G D + T HI ++ Sbjct: 56 ---TIKGLIQKYMESERWPALAQNTKKSYRRHFGYLEEVAGHIDPATLRTAHIYEMRDAL 112 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + TP+ A + + ++ L VR ++ NP VE+ K PW ++ F+ Sbjct: 113 RDTPTDANRKIGTLSTLLAHGVRIGWLDRNPAEGVEKLKGLRPPREPWPDTKIKAFRG-- 170 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246 P L FE LL +G R D + +++ ++ QKTG I V D +L Sbjct: 171 EAAPLPLLIFEMLLGTGQRIGDVLKMRWDDIEDGGIWVRQQKTGAGIFVPFTDELAAILE 230 Query: 247 MTPIGKETFFIN-NDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSAT-ISADAGATA 304 TP +T N + + + + + + H +R +A I++ G + Sbjct: 231 QTPRQGDTIIAQPNGRPCSYSFAHKLVTEVRVKIDAMAWDIHALRHSAAAEIASLPGMSI 290 Query: 305 HELMATYGWKTVDQAETYTKGAD 327 +MA G + A Y++ AD Sbjct: 291 EHVMAITGHSSEQMARHYSRKAD 313 >gi|83311808|ref|YP_422072.1| integrase [Magnetospirillum magneticum AMB-1] gi|82946649|dbj|BAE51513.1| Integrase [Magnetospirillum magneticum AMB-1] Length = 335 Score = 83.2 bits (204), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 84/331 (25%), Positives = 141/331 (42%), Gaps = 23/331 (6%) Query: 10 FVTKERTRHGKIIYYFRKGH--GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKK 67 +VT+ + H YY R G GR LP E A ++A K + Sbjct: 3 YVTETKPGH---FYYRRNGRYWGRLPGLPGSIEFATEYARLNASFADVGKTPAV------ 53 Query: 68 PTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126 P T ++ Y S + +L ++ ++ D + + G F I KH+ + Sbjct: 54 PGTFDAMVEAYLASGEYRQNLKQKTKDAYRYDLDILRTRFGKFRVADIEVKHVLKMRDFF 113 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPC--LSVERPKRKTEGIRPWTKEDMQQFKS 184 P A + ++RV+F W + + + NP V K K +PW + +F+ Sbjct: 114 ADKPGKANTLVRTLRVVFGWGIGRGLMKTNPADLKGVNVKKLKIGAHKPWAPAALAKFR- 172 Query: 185 FWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242 +EG QP LAFE L +G R D R + + + + +KTG + + + Sbjct: 173 --AEG-QPHLVLAFELGLATGQRQGDLIRLRWDDISDGVVHVAQEKTGKELWLPVSKHLA 229 Query: 243 KLLAMTPIGKETFFINNDKQK-MNATQFSIWFKAKATKAGVNKSA-HGVRKFSATISADA 300 +LA P T +N+ + A + F A+ T+ G++ HG+RK +A AD Sbjct: 230 GVLARAPRQAVTVLVNSRGTPWIKANPLAQAFGAEITRLGLDGLVFHGLRKTAAVALADV 289 Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRL 331 G + ++ A G ++ E YT+GAD+ RL Sbjct: 290 GCSTKQIAAVTG-QSDQMVEHYTRGADQKRL 319 >gi|220922881|ref|YP_002498183.1| integrase family protein [Methylobacterium nodulans ORS 2060] gi|219947488|gb|ACL57880.1| integrase family protein [Methylobacterium nodulans ORS 2060] Length = 351 Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 90/328 (27%), Positives = 150/328 (45%), Gaps = 29/328 (8%) Query: 11 VTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70 V + R RHGK Y R G+ I+ PY + A ++ L G K+E PR T Sbjct: 10 VKRYRDRHGKWRNYHR-ATGKPIKAPY--GTAEFAAEVAELNGLVSKKE---PPRN--GT 61 Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH---IRSGVESRK 127 L+ ++ EY+ + + LA+ +R +E YF +I + D + I + IR V + K Sbjct: 62 LRGVMDEYKTTPAFADLAMATRAGYERYF-EIAKPLHDVPIQSIDSAGLSVIRDKV-AMK 119 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR---KTEGIRPWTKEDMQQFKS 184 +A L+ + VLF +A+ ++YV NP V+R KR K + RPW+ +++ K+ Sbjct: 120 RGWRTANYMLSVLSVLFGFAIERKYVTQNPAFVVKRAKRDKTKPKANRPWS---LEERKA 176 Query: 185 FWSEG-SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243 +E S ++ +++G+R D+ ++ +I T KTG I + + + Sbjct: 177 VLAEAPSHLKVPLALAMFTGVRKRDALTLRKDAIRGG--AIATSKTGEEIFIRIHPELAE 234 Query: 244 LLAMTPI-GKETFFINNDKQKMNATQF-SIW--FKAKATKAGVNK---SAHGVRKFSATI 296 +LA P T + T F S+W FK K G + + HG+R Sbjct: 235 ILAGAPPHAAPTIAATSRGTPWTETGFNSVWDKFKDKLEAEGRVRPGLTIHGLRHTLGGH 294 Query: 297 SADAGATAHELMATYGWKTVDQAETYTK 324 ADAG + G KT+ A+ Y++ Sbjct: 295 LADAGCDLDTIRRVLGQKTLTMAQLYSE 322 >gi|254476705|ref|ZP_05090091.1| phage integrase [Ruegeria sp. R11] gi|214030948|gb|EEB71783.1| phage integrase [Ruegeria sp. R11] Length = 332 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 84/327 (25%), Positives = 140/327 (42%), Gaps = 21/327 (6%) Query: 12 TKERTRHGKIIYYFRKGHGRRIRLPY-PHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70 T +T G+ YFRK GR +RLP P+ + Y + G + P + T Sbjct: 7 TSSKTIKGRTYQYFRK-DGRYVRLPDDPNSEEYDREYWRLMRG--------DGPLSQRYT 57 Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130 + LI Y++S W SLA +R + + I K G D K+ I + +H Sbjct: 58 FEKLILSYKQSPRWESLAPRTRADYSRVLEYISDKLGSKDPTKMRRSTIIDAQMANRHRA 117 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 A + +LF+ ++ ++ NP + + K EG RPW + ++ Sbjct: 118 RFANYIPHMLSILFEHSIDLDWQRDNPAKGISKIK-TGEGHRPWPTSAITAYRKH--ANG 174 Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPI 250 L FE L +G R SD R +H+++ + KT + + +L A+ Sbjct: 175 LALLIFELALGTGQRASDLTRMEWEHIEDGGIWVTQGKTKARLWLPFT---ARLAAVIDA 231 Query: 251 GKETF--FINNDK--QKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAH 305 ++T FI D+ ++N Q A A + + S HG+R +A A+AG T Sbjct: 232 SQKTSAKFILADRFGNQLNYDQLQKKVMAVRRIANLTEYSLHGLRYSAAGELAEAGCTDQ 291 Query: 306 ELMATYGWKTVDQAETYTKGADRIRLG 332 ++ A G K++ + Y+KGA + RL Sbjct: 292 QIAAITGHKSLSMVQKYSKGASQKRLA 318 >gi|126461390|ref|YP_001042504.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17029] gi|126103054|gb|ABN75732.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17029] Length = 389 Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 61/224 (27%), Positives = 104/224 (46%), Gaps = 11/224 (4%) Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 I++G+ + TP A + L + L AV+ E NP V+R K + G WT+ + Sbjct: 144 IKAGLSA---TPQKAKKTLKRLSQLMDLAVKLEMRGDNPVKGVDRYKTGSGGFHAWTEAE 200 Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-----GTII 233 + +F + G+ L+ +LYSG D+ + G +++ + QKT G ++ Sbjct: 201 IARFFEVYLPGTPAFLSMTLMLYSGASRCDAVKLGWGNIRGGRLEYRRQKTRKNPEGILV 260 Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKF 292 ++ + + L P G TF + AT + KAG+ S+HG+RK Sbjct: 261 SIPVHPFLAEALQAVPNGAFTFLQTEQGKSRTATGLGTAMRKWCDKAGLPLCSSHGLRKA 320 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336 A+AG AHE+M+ G T+ +A+ Y + D R G+ +S Sbjct: 321 ICRRIAEAGGEAHEIMSVSGHITLAEAQRYCE--DFGRKGLADS 362 >gi|83951418|ref|ZP_00960150.1| Integrase/recombinase [Roseovarius nubinhibens ISM] gi|83836424|gb|EAP75721.1| Integrase/recombinase [Roseovarius nubinhibens ISM] Length = 352 Score = 79.7 bits (195), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 89/328 (27%), Positives = 146/328 (44%), Gaps = 28/328 (8%) Query: 19 GKIIYYFRKGHGRRIRLPY-PHES-TFIPAYMSAL-TGSTPKREYINSPRKKPTTLKWLI 75 G YY RK ++ L P +S F+ Y +A+ T TP R +S L +I Sbjct: 9 GTTYYYLRKRGQSKVPLGKGPIDSPEFLSRYSAAMGTKKTPSRAAKDS-------LGHII 61 Query: 76 SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQ 135 ++ SA++ + + R + + D + G + +I HIRS + + +P +A Sbjct: 62 ELFKASANYRAYSEAYRGTLGRHSDALKECYGSAPFSEIKPHHIRSDLS--QLSPHAAND 119 Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKR-KTEGIRPWTKEDMQQFKSFWSEGSQPRL 194 L R+L ++A + ++R K KT+G RPW+ D+ F++ W GS RL Sbjct: 120 RLKIWRLLCQYAYDHNFADHVASDGIKRGKLPKTDGHRPWSTADVNAFRAKWEIGSVQRL 179 Query: 195 AFEFLLYSGLRCSDSCRAGVQHL-QNNIFSIKTQKTGTIITV----ELPDGFMK------ 243 FE L ++ R D+ + + + + KTG V LP G+ K Sbjct: 180 CFELLFWTAARTIDAVTLTPSMIGADGVLTFTQAKTGGKAYVPWNCALP-GWAKHFETDR 238 Query: 244 --LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADA 300 L A TF ++ + + S A A +A + SAHG+RK T A+A Sbjct: 239 TLLKACITSTTFTFLETSNGRARSRKGLSNIISAGAAEAKLTGLSAHGLRKSRLTAIAEA 298 Query: 301 GATAHELMATYGWKTVDQAETYTKGADR 328 G +A +M+ G K++ +AE Y A+R Sbjct: 299 GGSASAIMSWGGHKSLKEAEDYVSTANR 326 >gi|315121819|ref|YP_004062308.1| phage-related integrase/recombinase [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495221|gb|ADR51820.1| phage-related integrase/recombinase [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 83 Score = 79.3 bits (194), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 36/56 (64%), Positives = 47/56 (83%) Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348 S TIS ++GAT+H+LMATYGWK++ QAETYTKGADRI+LGIK SRR++ + + P Sbjct: 21 SITISFESGATSHDLMATYGWKSITQAETYTKGADRIQLGIKTSRRMADSLTNPKP 76 >gi|332186915|ref|ZP_08388656.1| phage integrase family protein [Sphingomonas sp. S17] gi|332012925|gb|EGI54989.1| phage integrase family protein [Sphingomonas sp. S17] Length = 357 Score = 79.0 bits (193), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 83/335 (24%), Positives = 139/335 (41%), Gaps = 21/335 (6%) Query: 11 VTKERTRHGKIIYYFRKGHGRRIRLPY-PHESTFIPAYMSALTGSTPKREYINSPRKKPT 69 VT RHGK+ FRK + + + P E F Y + L R I P Sbjct: 8 VTVNPDRHGKLRARFRKTGRPAVYMKHLPDEKGFKEEYEALLA----NRPLIVVRPAVPG 63 Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS------GDFDYRKITTKHI---- 119 ++ L+S Y S + + Y R+ DF + I + Sbjct: 64 SVGDLVSRYYASGDFKGRGTAETQARRKYLIDSFRQDVADDLVSDFGFEHIEAILLARTE 123 Query: 120 RSGVESRKHTPS---SAIQFLTSMRVLFKWAVRQEYVAINPCL-SVERPKRKTEGIRPWT 175 + E+RK +A++ +R LF +A + +++ NP + K+K G WT Sbjct: 124 KRWDETRKRMMGGEVAAVKLRKELRRLFAYAKKLKWIEQNPVEEAAPIGKQKLTGFHTWT 183 Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235 ++++ QFK+ G++ RLA E +L++G R D+ G H+ + K + + Sbjct: 184 EDEISQFKARHPIGTRARLALEIMLWTGQRRGDARLFGPAHVVRGKINFTAAKNQADLWL 243 Query: 236 EL-PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFS 293 + PD + AM IG TF + + F + +AG+ + +AHG+RK Sbjct: 244 PIAPDLRRAIDAMDSIGLRTFLVTTAGKTFTKDGFGNKMREWCDEAGLPQCTAHGLRKAI 303 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 A + AT E+ A GWK + YT A++ Sbjct: 304 GRRMAQSQATQLEIKAVGGWKGDSEVAIYTAAAEQ 338 >gi|315122003|ref|YP_004062492.1| phage-related integrase/recombinase [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495405|gb|ADR52004.1| phage-related integrase/recombinase [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 98 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 38/72 (52%), Positives = 47/72 (65%), Gaps = 4/72 (5%) Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAG 301 MK+L +TP G+ETF + +K+KMNA QFS+W K K KAG+ KSAHGVRK SAT+ Sbjct: 1 MKILEITPTGRETFILKREKEKMNAFQFSLWLKEKDKKAGIKKSAHGVRKLSATLF---- 56 Query: 302 ATAHELMATYGW 313 EL T W Sbjct: 57 KLKRELQLTSSW 68 >gi|260427090|ref|ZP_05781069.1| phage integrase family protein [Citreicella sp. SE45] gi|260421582|gb|EEX14833.1| phage integrase family protein [Citreicella sp. SE45] Length = 357 Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 83/351 (23%), Positives = 146/351 (41%), Gaps = 34/351 (9%) Query: 5 LRLPPFVTKERTRHGKIIYYFR-KGHG-RRIRLPY-PHESTFIPAYMSALTGSTPKREYI 61 ++ P +V ++R G+ ++ R KG+ RR+ +P P + F Y +A G +P E + Sbjct: 3 VQFPGYVPEKRG--GRTLHRVRVKGNAARRVTIPVGPEDPQFSALYHAARRGESP--EVV 58 Query: 62 NSPRKKPTTLKWLISEYR-------KSAHWGSLAVNSRISFESYFDQIIRKSG------- 107 +L L+ Y + L R S + SG Sbjct: 59 KQSLAPAMSLDALVDAYLELLESDVRHGQASRLTHRQRKSLLKRACDMPDDSGTGRMGAL 118 Query: 108 DFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167 D + +HI + +R + I+ ++R + R +++ NPC+ ++R R Sbjct: 119 HCDLPPVALRHIIAQWGARTAQADNTIK---ALRAAYD---RMDWLDANPCVGIKRVHRS 172 Query: 168 TEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAG----VQHLQNNIFS 223 G PW+ D+Q F +G+ R+ L++G R SD + G V+ Sbjct: 173 KGGTTPWSTGDVQAFMKAHPQGTSARVWLMLALFTGARLSDLAKLGRANEVRRDGMTWIE 232 Query: 224 IKTQKTGTIIT-VELPDGFMKLLAMTPIGKETFFINNDKQKM-NATQFSIWFKAKATKAG 281 + K G+ T + + + + T + T+ +N Q N + + AG Sbjct: 233 WQPSKRGSSHTSMPMAPQLAEAVRATGVIGRTYILNQQGQPFANGPVLAERVRRWTADAG 292 Query: 282 VN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 + +S+HG+RK I ADAGAT H++M+ + + YTK A R RL Sbjct: 293 LERRSSHGLRKALGGILADAGATEHQIMSVLSHASPTTSAIYTKSAQRARL 343 >gi|319405344|emb|CBI78962.1| phage-related integrase/recombinase (fragment) [Bartonella sp. AR 15-3] Length = 140 Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 39/129 (30%), Positives = 71/129 (55%), Gaps = 2/129 (1%) Query: 175 TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--TI 232 +ED+ Q+ W+ + R+ + LLY+GLR D+ R + +++NI +KT+K+ T Sbjct: 2 VREDIDQYYHCWAHATHERVWIDVLLYTGLRRDDAVRIAWKCVKDNIIHLKTEKSQFKTD 61 Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKF 292 + + + + L + PIG ETF + +++ F F+ A + KSAHG+RK Sbjct: 62 VFLSILPKLAETLKIGPIGNETFIRSKGNKQLTKESFGKLFRGACNIASIKKSAHGLRKL 121 Query: 293 SATISADAG 301 +AT + ++G Sbjct: 122 AATSAENSG 130 >gi|153009491|ref|YP_001370706.1| phage integrase family protein [Ochrobactrum anthropi ATCC 49188] gi|151561379|gb|ABS14877.1| phage integrase family protein [Ochrobactrum anthropi ATCC 49188] Length = 297 Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 56/219 (25%), Positives = 104/219 (47%), Gaps = 7/219 (3%) Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 TP+ A F+ ++ V++ WA ++ V+ NP +++ K +G PW +D+++F + Sbjct: 73 TPAQADAFIEAVGVMYDWAKKRNLVSSNPAKGIDKVYIKGDGAIPWKADDVKKFFAKHKP 132 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQH--LQNNIFSIKTQ---KTGTIITVELPDGFMK 243 GS+ +A LL++G R D G ++ + I +++ Q K + ++V L Sbjct: 133 GSKAHVAMSVLLWTGCRIEDLAVLGRKNECVIEGIEAVRWQPSKKGSSEVSVPLLPALKT 192 Query: 244 LLAMTPIGKETFFIN-NDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAG 301 + T+ + K + S FK A + SAHGVRK A + A+ G Sbjct: 193 ATCTPTVQGGTYVLGRGGKPFASGDSMSAMFKRWCKDADLPLLSAHGVRKGLAELLAEQG 252 Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340 + +E+MA G +E YT+ +R +L + R++ Sbjct: 253 CSQYEIMAILGHSEAKTSEVYTRRVERWKLALGAVERVN 291 >gi|265984520|ref|ZP_06097255.1| integrase/recombinase [Brucella sp. 83/13] gi|306839293|ref|ZP_07472110.1| integrase/recombinase protein [Brucella sp. NF 2653] gi|264663112|gb|EEZ33373.1| integrase/recombinase [Brucella sp. 83/13] gi|306405840|gb|EFM62102.1| integrase/recombinase protein [Brucella sp. NF 2653] Length = 333 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 54/233 (23%), Positives = 108/233 (46%), Gaps = 10/233 (4%) Query: 4 SLRLP-PFVTKERTRHGKIIYYFRKGHGRRIRL--PYPHES-----TFIPAYMSALTGST 55 S R+P + +++ RHG +Y R + R+ Y E+ F Y L G Sbjct: 12 SQRVPFKYCSRDIDRHGNERFYLRLPGMPKYRMTSAYLDEAGSITQAFTEEYHRVLAGGR 71 Query: 56 PKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT 115 ++ + R +P +++WL+ Y +S + S + ++ +S ++ G+ ++KI Sbjct: 72 GEKA-VPISRLEPGSVRWLVETYYRSKAFQSQSPATQKDKKSVLNRYCLNVGELPFKKIR 130 Query: 116 TKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175 I + R TP +A + + ++ LF WA+ E P V + ++ G W+ Sbjct: 131 KSDIEASQMKRSGTPGAADKLVKYLKALFNWAISAELATFTPANGVTK-IHQSPGFHTWS 189 Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228 + ++ ++++ + GS RLA E +L G+R SD + G ++L + +K Sbjct: 190 EAELARYRAAYPLGSMARLAMELMLNLGVRRSDLVKLGWRNLVGDRIEFMPEK 242 >gi|254476808|ref|ZP_05090194.1| phage integrase [Ruegeria sp. R11] gi|214031051|gb|EEB71886.1| phage integrase [Ruegeria sp. R11] Length = 333 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 81/326 (24%), Positives = 137/326 (42%), Gaps = 25/326 (7%) Query: 15 RTRHGKIIYYFRKGHGRRIRLPY-PHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73 +T G++ YYFR+G + RLP P F AY + +G K K TT + Sbjct: 13 KTVKGRVYYYFRRGETYQ-RLPNDPDSQEFDDAYWAIRSGRAKK--------KTKTTFEA 63 Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133 LI Y ++ + R + + I K+G D+ K+ + + + ++ T A Sbjct: 64 LIVSYYQTPEFKDRKPRVRQEYRRTLELIREKNGPKDFTKLRRRDVIAARDAYSDTWRKA 123 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193 + + +L + A+ E++ NP V+ K K +PW ++ F+++ + Sbjct: 124 NAMVEMISILSRHAIDLEWITANPASGVK--KLKGGEYQPWPAAKLRAFEAYCENNA--- 178 Query: 194 LAFEFLLY-----SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT 248 L +E Y +G R D H S+ +KT + V P+ K L Sbjct: 179 LEWELTAYMLGVGTGQRIGDVIGMEWAHYDGQFISVVQEKTAARLWVACPEFLRKYLDGL 238 Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA---HGVRKFSATISADAGATAH 305 P K F I K A + +I + A + + A HG R +A A+AGA+ Sbjct: 239 P-RKGRFIIAQSLHKGVAKR-TIQQRVMAVRKEIGAQAFVIHGWRYTAAVHLAEAGASDS 296 Query: 306 ELMATYGWKTVDQAETYTKGADRIRL 331 E+ A G KT++ + Y A++ RL Sbjct: 297 EIQAVTGHKTLEMVKKYRSQANQKRL 322 >gi|260433594|ref|ZP_05787565.1| phage integrase family protein [Silicibacter lacuscaerulensis ITI-1157] gi|260417422|gb|EEX10681.1| phage integrase family protein [Silicibacter lacuscaerulensis ITI-1157] Length = 374 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 80/322 (24%), Positives = 135/322 (41%), Gaps = 10/322 (3%) Query: 17 RHGKIIYYFR-KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75 RHG + +R KG + Y + F Y +AL K + + R P T L+ Sbjct: 18 RHGNRRWRYRCKGFSAELGTDYGSDE-FERRYQAALNHQKEK-QANGAGRSVPGTFDDLV 75 Query: 76 SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQ 135 + + + + L ++ + + + + R+ G + +H+ TP+ A + Sbjct: 76 ARFYQ-LKFPELEEITKRDYRAVIEPLRRQHGHKRVAGMRQRHVLEIKAQLSSTPAQANK 134 Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA 195 L + L K AV+ E+ + NP VE + + G WT++++ +F + GS LA Sbjct: 135 TLKRLSQLMKLAVQLEWRSDNPVSGVEFYQTGSSGYHTWTEDEIARFYAKHERGSLAYLA 194 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIF---SIKTQKTGTIITVELP--DGFMKLLAMTPI 250 +LY+G D+ G +++ KT+K I V +P L P Sbjct: 195 MTLMLYTGASRKDAVALGRGNIRGGRLIYRRSKTRKNPNGIEVNIPVHPTLADALETVPE 254 Query: 251 GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMA 309 G TF N KQ + + KAG+ S+HG+RK A+AG T E+M+ Sbjct: 255 GAFTFLETNRKQARSPNGLGNDMREWCDKAGLPMCSSHGLRKAICRRIAEAGGTPFEIMS 314 Query: 310 TYGWKTVDQAETYTKGADRIRL 331 G T+ A+ Y + R L Sbjct: 315 VSGHITLAMAQHYCEAFGRKNL 336 >gi|85707546|ref|ZP_01038619.1| Phage related integrase [Roseovarius sp. 217] gi|85667933|gb|EAQ22821.1| Phage related integrase [Roseovarius sp. 217] Length = 339 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 73/319 (22%), Positives = 127/319 (39%), Gaps = 21/319 (6%) Query: 15 RTRHGKIIYYFRKGHGRRI---RLP-YPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70 +T G+ YFR G ++ RLP P F+ AY + +G R+ + S TT Sbjct: 12 KTVKGRDYIYFRLDRGSKVTRHRLPSNPDSEEFMQAYWAIRSG----RKKVQSK----TT 63 Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130 L++E+ K+ + A +R ++ + + I K+G+ D ++ K + + + T Sbjct: 64 WHNLVTEFYKTPGYLGKAKGTRENYRRHCEAIREKNGEKDVQRFKRKDALAVQRALQDTW 123 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS--E 188 S A + + + +L K AV E++ NP + + PK PW + + ++ + + Sbjct: 124 SKANERIAVLSILCKLAVDLEWIDRNPVVDI--PKLSGGEYEPWPDDKLTAYERYCDRHD 181 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT 248 + R +E + +G R D S+ KTGT +T+ P L Sbjct: 182 LTDARTIYELCIGTGQRIGDCVAMRWDDFDGEFMSVVQDKTGTKLTIYCPARLQTYLCTL 241 Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA-----HGVRKFSATISADAGAT 303 P N Q M + T + HG R +A +DAG Sbjct: 242 PRKGRHIMAKNLTQPMGKRAAQKAVEGVRTALDIMHGEARLVPHGWRYTAAVQLSDAGCD 301 Query: 304 AHELMATYGWKTVDQAETY 322 E+ A G KT++ Y Sbjct: 302 DAEIQAVTGHKTMEMVRKY 320 >gi|163736741|ref|ZP_02144160.1| phage integrase [Phaeobacter gallaeciensis BS107] gi|161390611|gb|EDQ14961.1| phage integrase [Phaeobacter gallaeciensis BS107] Length = 333 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 77/326 (23%), Positives = 137/326 (42%), Gaps = 25/326 (7%) Query: 15 RTRHGKIIYYFRKGHGRRIRLPY-PHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73 +T G++ YYFR+G + RLP P F AY + +G S ++ TT + Sbjct: 13 KTVKGRVYYYFRRGETYQ-RLPNDPDSQEFDNAYWAIRSG--------RSQKQTKTTFEA 63 Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133 LI Y ++ + + + + I K+G D+ K+ +++ + ++ T A Sbjct: 64 LIVSYYQTPEFKDRKPRVQQEYRRTLELIREKNGPKDFTKLRRRNVIAARDAYADTWRKA 123 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193 + + +L + A+ E++ NP V+ K K +PW ++ F+++ GS Sbjct: 124 NAMVEMISILSRHAIDLEWITANPASGVK--KLKGGEYQPWPAAKLRAFEAYCESGS--- 178 Query: 194 LAFEFLLY-----SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT 248 L +E Y +G R D H S+ +KT + V P+ L Sbjct: 179 LEWELTAYMLGIGTGQRIGDVIGMEWAHYDGQFISVVQEKTAARLWVACPEFLRTYLDNL 238 Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA---HGVRKFSATISADAGATAH 305 P + FI + +I + A + + A HG R +A A+AGA+ Sbjct: 239 P--RSGRFIIAQSLHKGVAKRTIQQRVMAVREKIGAQAFVIHGWRYTAAVHLAEAGASDS 296 Query: 306 ELMATYGWKTVDQAETYTKGADRIRL 331 E+ A G KT++ + Y A++ RL Sbjct: 297 EIQAVTGHKTLEMVKKYRNQANQKRL 322 >gi|299132356|ref|ZP_07025551.1| phage integrase [Afipia sp. 1NLS2] gi|298592493|gb|EFI52693.1| phage integrase [Afipia sp. 1NLS2] Length = 205 Score = 72.8 bits (177), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 48/165 (29%), Positives = 82/165 (49%), Gaps = 6/165 (3%) Query: 99 FDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPC 158 D + G+ Y+ + KHIR ++R P SA F+ ++R +FK+AV +YV N Sbjct: 41 LDNFCAEDGEKPYKLLLPKHIRKRRDARADRPESANAFIKALRQVFKYAVDNDYVVSNLA 100 Query: 159 LSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ 218 +V K K +G W E++++F+ GS RLA ++Y+G R SD+ G H + Sbjct: 101 QAVPYLKAKGDGHHTWMLEEVERFERTHPIGSTARLALALMIYTGQRRSDAVLLGPNHFK 160 Query: 219 NN-----IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFIN 258 + F + +K T+ LP+ +++ T G +T +N Sbjct: 161 DGWLHFTQFKGRERKPITLDVPILPE-LQRIIDATACGTDTSLLN 204 >gi|149915233|ref|ZP_01903761.1| phage integrase [Roseobacter sp. AzwK-3b] gi|149810954|gb|EDM70793.1| phage integrase [Roseobacter sp. AzwK-3b] Length = 325 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 76/311 (24%), Positives = 131/311 (42%), Gaps = 22/311 (7%) Query: 6 RLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGS--TPKREYINS 63 +LP +V R R G Y+ R +RI P + F Y L G+ PKR Sbjct: 5 QLPKYVYA-RGRKG-YPYFIRGNTCQRI-FAEPGSNAFWAEYNRLLNGAPTAPKR----- 56 Query: 64 PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123 T+ LI Y +S W A N+R S+E F K G D I +H+ Sbjct: 57 ------TINKLIEHYMRSPDWAKKAHNTRKSYERSFLYFRDKIGLVDPASIRRRHVNDMR 110 Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVA-INPCLSVERPKRKTEGIRPWTKEDMQQF 182 ++ TP++A + + ++ VL A+ +V +NP V++ T+ W + ++ F Sbjct: 111 DALSATPTTANRRVAALSVLMNHAIDIGWVEHVNPARGVKQLD-GTKTREAWPVDMVEAF 169 Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242 ++ + Q L FE L+ +G R D +++N ++ KT + + + Sbjct: 170 RT--AATGQTLLLFELLIGTGQRIGDVLNMQWGQIEDNGIVVRQSKTKAEVWIPFTRRLL 227 Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAG 301 +L TP + IN++ ++ W + G + HG+R +A+ A G Sbjct: 228 DMLNKTP-RNALYIINHEGHRVAYNTAWKWVMDVRKQIGATDYDIHGLRHTAASELAALG 286 Query: 302 ATAHELMATYG 312 T E+M+ G Sbjct: 287 MTDEEIMSITG 297 >gi|254719515|ref|ZP_05181326.1| integrase/recombinase protein [Brucella sp. 83/13] Length = 290 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 43/187 (22%), Positives = 88/187 (47%), Gaps = 2/187 (1%) Query: 42 TFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ 101 F Y L G ++ + R +P +++WL+ Y +S + S + ++ +S ++ Sbjct: 15 AFTEEYHRVLAGGRGEKA-VPISRLEPGSVRWLVETYYRSKAFQSQSPATQKDKKSVLNR 73 Query: 102 IIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV 161 G+ ++KI I + R TP +A + + ++ LF WA+ E P V Sbjct: 74 YCLNVGELPFKKIRKSDIEASQMKRSGTPGAADKLVKYLKALFNWAISAELATFTPANGV 133 Query: 162 ERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI 221 + ++ G W++ ++ ++++ + GS RLA E +L G+R SD + G ++L + Sbjct: 134 TK-IHQSPGFHTWSEAELARYRAAYPLGSMARLAMELMLNLGVRRSDLVKLGWRNLVGDR 192 Query: 222 FSIKTQK 228 +K Sbjct: 193 IEFMPEK 199 >gi|146279095|ref|YP_001169254.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17025] gi|145557336|gb|ABP71949.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17025] Length = 361 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 52/211 (24%), Positives = 98/211 (46%), Gaps = 10/211 (4%) Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAI-NPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 +H P+ A + S+ +++WA+ + +A NP + + R G P T ED+++F++ Sbjct: 136 RHKPAEADNLIKSISAMYRWAIDEAEIATGNPAAGIGKLNRGGGGAAPRTAEDLKKFRAK 195 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAG----VQHLQNNIFSIKTQKTGTI-ITVELPDG 240 G+ L +++ R D+ + G V+ + K G+ ++V L Sbjct: 196 HPLGTTAHLWLTLQMFTACRIDDARKLGRGNEVERAGALWIEFQPGKKGSAPVSVPLLPQ 255 Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAK--ATKAGV-NKSAHGVRKFSATIS 297 +K + T+ + D + +T S+ + + AG+ KS+HG+RK + Sbjct: 256 LLKATRAQKVQGATYLLT-DYGRPFSTAESLRNRVRKWCAAAGIEGKSSHGIRKAMGELL 314 Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADR 328 A+AG T H++MA +E YTKG +R Sbjct: 315 AEAGCTQHQIMAIMAHTKAKTSEIYTKGVER 345 >gi|119386436|ref|YP_917491.1| phage integrase family protein [Paracoccus denitrificans PD1222] gi|119377031|gb|ABL71795.1| phage integrase family protein [Paracoccus denitrificans PD1222] Length = 342 Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 88/337 (26%), Positives = 140/337 (41%), Gaps = 27/337 (8%) Query: 9 PFVTKERTRHGKIIYYFR----KGHGRRIR-LPYPHE---STFIPAYMSALTGSTPKREY 60 P+VT +RT GK +Y+R +G RR R +P P + F AY S +G++ E Sbjct: 7 PYVTLKRT-GGKARWYYRLTWFEGARRRERFIPLPDDPDSEEFDRAYWSIRSGTS---EE 62 Query: 61 INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120 + P+K+ T + L+ YR SA + LA ++ S+ + I+ + D IT + +R Sbjct: 63 VQRPKKE--TWRQLVMAYRGSAGFRKLAPRTQKSYNDTIEWILSANADKAVSTITKQKLR 120 Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQ-EYVAINPC--LSVERPKRKTEGIRPWTKE 177 TP A + + +L +A Q E+ NP L++ +R+ E PW + Sbjct: 121 DLHVKYGETPRKADMLVQMVSILVNFARTQLEWAVTNPAEGLTLYGKQREYE---PWPE- 176 Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL 237 K+ R A E +L +G R S + ++ +K + Sbjct: 177 --WMVKALPDAPLVVRSAAELILGTGQRPSAAIVMRRDQFHGEWMTVTDEKGDESYEIFC 234 Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKFSA 294 P LA P+ + N Q M F+A T G S HG+RK S Sbjct: 235 PQELRSYLASLPVAGQHVIPRNLTQPMRYDSVEKAFRAWRTDLGDRARPFSLHGLRKLSI 294 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 A+AG T E+ A ++ Y K A+R +L Sbjct: 295 IRLAEAGCTDAEIQAITN-QSAQTVAYYRKRANRKKL 330 >gi|254471175|ref|ZP_05084577.1| site-specific recombinase, phage integrase family [Pseudovibrio sp. JE062] gi|211959321|gb|EEA94519.1| site-specific recombinase, phage integrase family [Pseudovibrio sp. JE062] Length = 426 Score = 69.3 bits (168), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 72/276 (26%), Positives = 117/276 (42%), Gaps = 21/276 (7%) Query: 67 KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI--IRKSGDFDYRKITTKHIRSGVE 124 +P TL LI +YR S+ + LA ++ ++ FD + I + + +R E Sbjct: 60 RPGTLGNLIDKYRASSAFLELADRTKSDYQKVFDYLAPIHNTPLTRFTSPFIVKLRDKAE 119 Query: 125 S-RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCL---SVERPKRKTEGIRPWTKEDMQ 180 RK ++ ++ + S VLF W + +V NP L S+ +PK RPWT ++ Sbjct: 120 EQRKRRFANYVKQVLS--VLFSWGKERGFVKENPALGVKSIRKPKNAPIANRPWTDDE-- 175 Query: 181 QFKSFWSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238 + + + P++ A ++Y+GL D+ Q QN S + KTG + + Sbjct: 176 --RGIVLKHAPPQMVPALTLMMYTGLGPQDALTLSKQQYQNGFISTRRAKTGAPVFWPVI 233 Query: 239 DGFMKLLAMTPI-GKETFFINNDKQKMNATQF-SIWFKAKATKAGVNK-----SAHGVRK 291 L P G T N+ Q + F + W K + N + +G+R Sbjct: 234 APLKAALDDAPDHGAPTLCTNSRGQPWTVSGFRASWRKLRIQLEDKNLIKPGLTLYGLRH 293 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 ATI + G +L A G +T A Y KGAD Sbjct: 294 TVATILREIGLNDRDLAAALGHETEAMARLYAKGAD 329 >gi|99081169|ref|YP_613323.1| phage integrase [Ruegeria sp. TM1040] gi|99037449|gb|ABF64061.1| Tyrosine recombinase xerD [Ruegeria sp. TM1040] Length = 333 Score = 68.9 bits (167), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 78/327 (23%), Positives = 133/327 (40%), Gaps = 27/327 (8%) Query: 15 RTRHGKIIYYFRKGHGRRIRLPY-PHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73 +T G++ YYFR+G + RLP P F AY + +G K K TT + Sbjct: 13 KTVKGRVYYYFRRGETYQ-RLPNDPDSQEFDDAYWAIRSGRAKK--------KAKTTFEA 63 Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133 LI Y ++ + + + + I K+G D+ K+ + + + ++ T A Sbjct: 64 LIVSYYQTPEFRDRKPRVQQEYRRTLELIREKNGPKDFTKLRRRDVIAARDAYADTWRKA 123 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG-IRPWTKEDMQQFKSFWSEGSQP 192 + + +L + A+ E++ NP V K+ T G PW +Q F++F + Sbjct: 124 NAMVEMISILSRHAIDLEWITANPASGV---KKLTGGEYEPWPDAKLQAFEAFCKKHD-- 178 Query: 193 RLAFEFLLY-----SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM 247 L +E Y +G R D H ++ +KT + V P + L Sbjct: 179 -LEWELTAYMLGVGTGQRIGDVVGMEWAHYDGQFIAVVQEKTAARLWVACPTFLKRYLDG 237 Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATK---AGVNKSAHGVRKFSATISADAGATA 304 P + FI + +I + A + V HG R +A A+AGA+ Sbjct: 238 LP--RRGRFIIAQSLHKGVAKRTIQQRVMAVREKIGAVGYVIHGWRYTAAVHLAEAGASD 295 Query: 305 HELMATYGWKTVDQAETYTKGADRIRL 331 E+ A G KT++ + Y A++ RL Sbjct: 296 SEIQAVTGHKTLEMVKKYRSQANQKRL 322 >gi|126734338|ref|ZP_01750085.1| putative integrase [Roseobacter sp. CCS2] gi|126717204|gb|EBA14068.1| putative integrase [Roseobacter sp. CCS2] Length = 345 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 75/306 (24%), Positives = 125/306 (40%), Gaps = 21/306 (6%) Query: 23 YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSA 82 YY+ G RI+ Y F+ YM AL S SP+ K ++ WLI++Y +S Sbjct: 23 YYYAHRGGPRIQAKYG-SPEFVTQYM-ALKQSA-------SPKVKRNSIDWLITQYLESY 73 Query: 83 HWGSLAVNSRISFESYFDQIIRKSG----DFDYRKITTKHIRSGVESRKHTPSSAIQFLT 138 + +L+ S+ ++ Y I +K G D R R S + +A L Sbjct: 74 DFKALSDASKREYKRYLTLISQKFGKAPIDIATRNDAIAAYRQWHRSMQDKQRTANYALA 133 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR---PWTKEDMQQFKSFWSEGSQPRLA 195 ++ L WAV NP ++ KRK + R WTK+ + F + G + Sbjct: 134 VLKKLMAWAVDSGNTTTNPTAQIKPIKRKGKSTRRDIIWTKDQINHFNTV--AGCHVKNP 191 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF 255 F L + R D + I+ KTG + +++P+ +L E Sbjct: 192 FNAALLTSQRKKDIIEMTWDAYDGDTIKIRQSKTGKDVWIKVPEELKCILDGLDRTHERV 251 Query: 256 FINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHE--LMATYG 312 F+N+ Q + F+A A VN + H R + T++ GA+ E LM+ + Sbjct: 252 FLNSLGQPWTLDGYDSSFRAAKIAAKVNGVTFHDTRGTAVTLAYIGGASFREISLMSGHS 311 Query: 313 WKTVDQ 318 + V++ Sbjct: 312 EREVEE 317 >gi|323136790|ref|ZP_08071871.1| integrase family protein [Methylocystis sp. ATCC 49242] gi|322398107|gb|EFY00628.1| integrase family protein [Methylocystis sp. ATCC 49242] Length = 357 Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 60/278 (21%), Positives = 115/278 (41%), Gaps = 15/278 (5%) Query: 62 NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI--IRKSGDFDYRKITTKHI 119 +P++KP L LI +YR S + L+ ++ ++ +FD + I + + + I Sbjct: 56 QTPKEKPGALGMLICDYRASPAFLDLSARTQADYQKHFDYLRPIADTPLARFDRPLVVRI 115 Query: 120 RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCL---SVERPKRKTEGIRPWTK 176 R + K ++ V+F W + Y+A NP ++ RPK + RPW+ Sbjct: 116 RDKAAAAKGR-RFGNYLKATLSVVFGWGRERGYLADNPASGIKAIRRPKGAPDANRPWS- 173 Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236 D ++ + + A ++ +GL D+ H ++ + K KTG + Sbjct: 174 -DAERHAVLDAAPAHMLPAIALMMMTGLGPKDALALPRNHWRDGEIATKRAKTGEPVFWP 232 Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQK------MNATQFSIWFKAKATKA-GVNKSAHGV 289 +P+ +L P + + A+ ++ + +A A G + +G+ Sbjct: 233 VPEPLDAILRAAPRHDAVTLCASSTGRPWTLDGFRASWRTLRLRLEAQGAIGPGLTLYGL 292 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 R A I +AG + G KT++ A Y +GAD Sbjct: 293 RHTVAVILREAGFDERTIADALGQKTIEMARRYARGAD 330 >gi|121602777|ref|YP_989194.1| putative integrase [Bartonella bacilliformis KC583] gi|120614954|gb|ABM45555.1| putative integrase [Bartonella bacilliformis KC583] Length = 95 Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 35/87 (40%), Positives = 49/87 (56%) Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATA 304 LA PIG ETF + ++ + S F +AG+ KSAHG+RK +AT +A++GAT Sbjct: 8 LATGPIGDETFICSKSEKNSSKKALSTCFVKPCNQAGIKKSAHGLRKLAATRAANSGATV 67 Query: 305 HELMATYGWKTVDQAETYTKGADRIRL 331 ++ A +GW A Y K ADR L Sbjct: 68 SQMRALFGWTEDSMASLYPKRADRKNL 94 >gi|13488397|ref|NP_109404.1| hypothetical protein mlr9537 [Mesorhizobium loti MAFF303099] gi|14028151|dbj|BAB54743.1| mlr9537 [Mesorhizobium loti MAFF303099] Length = 183 Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 41/130 (31%), Positives = 64/130 (49%), Gaps = 1/130 (0%) Query: 213 GVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIW 272 G Q+ + S + +KTG + + + D +L + P + F + + T F W Sbjct: 5 GRQNFREGRISYRRRKTGGEVDLPILDELFDVLRLLPADRMLFLTHTGDRPYKPTTFGNW 64 Query: 273 FKAKATKAGVNKSA-HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 F + AG+ A HG+RK AT A+AGAT E+MA G +T D+A T K +R L Sbjct: 65 FHDQCIAAGLPHCASHGLRKAGATRLANAGATELEIMAYLGHRTPDEARTDVKKLNRKLL 124 Query: 332 GIKNSRRISS 341 G +++S Sbjct: 125 GDTGMEKVAS 134 >gi|332186170|ref|ZP_08387916.1| phage integrase family protein [Sphingomonas sp. S17] gi|332013985|gb|EGI56044.1| phage integrase family protein [Sphingomonas sp. S17] Length = 367 Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 70/305 (22%), Positives = 121/305 (39%), Gaps = 20/305 (6%) Query: 20 KIIYYFRKGHGRRIRLPYPHESTF---IPAYMSALTGSTPKREYINSPRKKPT--TLKWL 74 + YY+ +G G L + F PA+M + + I++PR+ T TL+ + Sbjct: 20 RATYYYLRGSGALNPLEGDEDQPFAPGTPAFMRSYYAA------IDAPRRARTAGTLQSV 73 Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD-----FDYRKITTKHIRSGVESRKHT 129 I Y KS + LA ++ + + +I K G + KI + + E K + Sbjct: 74 IDAYEKSPQFTKLAPRTQRDYGTALLKISDKFGTHPLAVVEDPKIRIRFLEWRDEMAKSS 133 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 P A L +R++ +W + ++ N ++ R + W D++ ++ S Sbjct: 134 PRQADAVLGVLRIVLEWGRDRGHLIHNHATRPKKVYRADRADKLWLPADIEALRAVAS-- 191 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTP 249 + RLAFE L +G R D ++ K + + + LL P Sbjct: 192 PEIRLAFELALGTGQRKGDLLALTWSSYDGQRIQLRQAKRKRFVDMPVTRSLKALLDAQP 251 Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELM 308 T N K + F ++ +AG N H +R + T+ A AGAT E+ Sbjct: 252 RTAATILTRNGK-PWGSVNFDHRWRETVLQAGRNGLHFHDLRGTACTVLAQAGATPSEIA 310 Query: 309 ATYGW 313 A GW Sbjct: 311 AMLGW 315 >gi|114766935|ref|ZP_01445855.1| Integrase [Pelagibaca bermudensis HTCC2601] gi|114540842|gb|EAU43904.1| Integrase [Roseovarius sp. HTCC2601] Length = 335 Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 56/242 (23%), Positives = 100/242 (41%), Gaps = 18/242 (7%) Query: 7 LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGST--PKREYINSP 64 LP +V + R +Y+ R G +RI P F Y + G PKR Sbjct: 5 LPAYVYAKGKR--GYLYFIRSGVCQRIH-SEPGTPEFAADYAILMRGRVVAPKR------ 55 Query: 65 RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124 + LI + +S W + A N+R +E + + +G+ D K+ T H+ + Sbjct: 56 -----NIGKLIELFMRSPKWANYAHNTRRGYERHLTYLRDTAGNIDPAKLRTVHVYEMRD 110 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 + P+ A + + ++ L + ++ ++ NP VER K +PW + + F++ Sbjct: 111 ALADKPTDANRKIDTLVALLNYGIQIGWIDRNPAHGVERLKATGRKRKPWPVDLIDAFRA 170 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244 + L FE LL +G R +D + + F + KT + + L D + Sbjct: 171 --EADGRTLLIFEMLLGTGQRINDVLALRWSDMDGDGFQLTQGKTKAELYIPLTDRLRAV 228 Query: 245 LA 246 LA Sbjct: 229 LA 230 >gi|119386556|ref|YP_917611.1| phage integrase family protein [Paracoccus denitrificans PD1222] gi|119377151|gb|ABL71915.1| phage integrase family protein [Paracoccus denitrificans PD1222] Length = 357 Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 81/358 (22%), Positives = 147/358 (41%), Gaps = 32/358 (8%) Query: 9 PFVTKERTRHGKIIYYFRKGHGR---RIRLPY-PHESTFIPAYMSALTGSTPKREYINSP 64 P + E R+G Y R GR RI LP P + F Y +A G ++ S Sbjct: 6 PGLLIESHRNGSPRYRVRV-EGRKHVRIHLPVGPEDKDFANYYYAARAGE----RWLPSE 60 Query: 65 RKK-PTTLKWLISEY----RKSAHWGSLAVNSRISFESYFDQIIRKSG-------DFDYR 112 RK ++ WL +EY + G ++ + S ++ SG DFD Sbjct: 61 RKAVKGSIDWLCAEYLSFVARMVEAGQMSPATLKQRRSVLRRLCDYSGGGSVRYGDFDMD 120 Query: 113 KITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK-RKTEGI 171 I H P +A + ++R ++ WA +EY+ NP ++ G Sbjct: 121 APAAAFIEIRDAWATH-PGAADNLIKTVRAVYTWAQEREYIRHNPAAGIKAINVNPAGGA 179 Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAG-VQHLQNN---IFSIKTQ 227 PW+ ++++F+ G+ L ++ R D+ G Q + + + + Sbjct: 180 VPWSVAELKKFREHHPRGTTAHLWLTLHAFTACRIGDAIWLGRAQEVMRDGQLWLGWQPR 239 Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAK--ATKAGV-NK 284 K G+ V +P L+A T ++ N+K K A+ ++ + + + AG+ ++ Sbjct: 240 KRGSAF-VSIPM-MPPLIAATRAADGPAYLLNEKGKPFASVEALRVRVQRWCSAAGIPDR 297 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342 S+HG+RK + A G T +++MA +E YTK R L + ++++ Sbjct: 298 SSHGIRKAVGELMAQNGCTQYQVMAVMAHTQAKTSEIYTKRVKRQILAADGVKALAAL 355 >gi|126461447|ref|YP_001042561.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17029] gi|126103111|gb|ABN75789.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17029] Length = 363 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 52/234 (22%), Positives = 105/234 (44%), Gaps = 17/234 (7%) Query: 107 GDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAI-NPCLSVERPK 165 G++D+R + I + + +H P A + S+ +++WA+ + +A NP +++ Sbjct: 119 GEYDFRAPRSA-IIAARDQWRHKPGEADNLVKSISAMYRWAIDEAEIATENPAAGIKKLN 177 Query: 166 RKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAG----VQHLQNNI 221 + G WT +D+++F+ G+ L +++ R D+ + G + Sbjct: 178 KGGGGAAAWTADDLKRFREAHPFGTTAHLWLTLQMFTACRIDDARKLGRSNEIDRGGTLW 237 Query: 222 FSIKTQKTGTI-ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ-----FSIWFKA 275 + K G+ +++ + +K + T+ + + + + W A Sbjct: 238 LEFQPGKKGSAPVSIPMLPPLLKAARAQKVQGATYLLTAAGKPFSTAESLRNRVQKWCAA 297 Query: 276 KATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 AG+ KS+HG+RK +A + A+AG T H++MA +E YTKGA R Sbjct: 298 ----AGIEGKSSHGIRKAAAELLAEAGCTQHQIMALMAHTQAKTSEIYTKGAQR 347 >gi|77462513|ref|YP_352017.1| integrase/recombinase [Rhodobacter sphaeroides 2.4.1] gi|77386931|gb|ABA78116.1| Possible integrase/recombinase [Rhodobacter sphaeroides 2.4.1] Length = 296 Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 52/234 (22%), Positives = 106/234 (45%), Gaps = 17/234 (7%) Query: 107 GDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAI-NPCLSVERPK 165 G++D+R + I + + +H P A + S+ +++WA+ + +A NP + +++ Sbjct: 52 GEYDFRAPRSA-IIAARDQWRHKPGEADNLVKSISAMYRWAIDEAEIATENPAVGIKKLN 110 Query: 166 RKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAG----VQHLQNNI 221 + G WT +D+++F+ G+ L +++ R D+ + G + Sbjct: 111 KGGGGAAAWTADDLKRFREAHPFGTTAHLWLTLQMFTACRIDDARKLGRSNEIDRGGTLW 170 Query: 222 FSIKTQKTGTI-ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ-----FSIWFKA 275 + K G+ +++ + +K + T+ + + + + W A Sbjct: 171 LEFQPGKKGSAPVSIPMLPPLLKAARAQKVQGATYLLTAAGKPFSTAESLRNRVQKWCAA 230 Query: 276 KATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 AG+ KS+HG+RK +A + A+AG T H++MA +E YTKGA R Sbjct: 231 ----AGIEGKSSHGIRKAAAELLAEAGCTQHQIMALMAHTQAKTSEIYTKGAQR 280 >gi|315122004|ref|YP_004062493.1| phage-related integrase/recombinase [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495406|gb|ADR52005.1| phage-related integrase/recombinase [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 38 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 28/34 (82%), Positives = 30/34 (88%) Query: 308 MATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341 MA YGWKTV QAE YTKGADR+RLGIKNSR I+S Sbjct: 1 MAGYGWKTVSQAEIYTKGADRVRLGIKNSRLIAS 34 >gi|302879928|ref|YP_003848492.1| tyrosine recombinase XerD [Gallionella capsiferriformans ES-2] gi|302582717|gb|ADL56728.1| tyrosine recombinase XerD [Gallionella capsiferriformans ES-2] Length = 305 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 57/222 (25%), Positives = 95/222 (42%), Gaps = 25/222 (11%) Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 +K PSSA + L+S++ LF++ +RQ +AI+P L ++ PK + T++D++Q + Sbjct: 66 QKAKPSSAGRNLSSLKRLFRYLLRQGKIAIDPTLKIDTPKLPRNLPQSLTEQDVEQLLAA 125 Query: 186 ----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI--------- 232 S G + R FE L +GLR S+ G+ L ++ ++ G Sbjct: 126 PDIETSLGLRDRTMFEVLYATGLRVSELVSLGIGQLDMDMGVVRVAGKGNKERLVPLGEV 185 Query: 233 ----ITVELPDGFMKLLAMTPIGK--ETFFINNDKQKMNATQFSIWFKAKATKAGVNK-- 284 + L D LLA G+ + F+ M F K A + G++K Sbjct: 186 ALDWLQSYLDDSRGVLLA----GRISDDLFVTARGSGMTRQMFWYLIKKHAKQGGLDKPL 241 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 S H +R AT + GA + G + + YT A Sbjct: 242 SPHTLRHAFATHLLNHGADLRVVQMLLGHADISTTQIYTHVA 283 >gi|255262833|ref|ZP_05342175.1| phage integrase family protein [Thalassiobium sp. R2A62] gi|255105168|gb|EET47842.1| phage integrase family protein [Thalassiobium sp. R2A62] Length = 336 Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 69/322 (21%), Positives = 127/322 (39%), Gaps = 17/322 (5%) Query: 7 LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66 LP V ++R +Y+ R+G + L F Y S L+G P + Sbjct: 6 LPKHVYRQRNG----LYFQRRGWKSQKFLAEFGTPEFWTEYASILSGERP------VSKI 55 Query: 67 KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126 + K LI Y +S+ + L + + ++ Y GD + + K + +S Sbjct: 56 TARSFKALIKSYHRSSRYTQLKPRTALDYDKYLRFFEDVMGDANPVNMKRKDVIRLRDSN 115 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 P A L +RVL + V + +NP V K + PW +E + Q++ Sbjct: 116 ADKPYFANYSLRVLRVLLEHCVDLGWREMNPARGVSEIKTVKKARSPWPQELLDQYRIAC 175 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246 G++ RLA E + +G R D +Q+ F+++ KTG + + + A Sbjct: 176 PLGTRERLAMELCVGTGQRIGDVIEMRWSDIQDGGFAVRQNKTGKQLWIPILPELQA--A 233 Query: 247 MTPIGKETFFINNDKQKMNATQF-SIWFKAKATKAGVNK---SAHGVRKFSATISADAGA 302 + + + FI +++ N + + K + +N H R +A +AG Sbjct: 234 LDAASRHSVFILTNERGTNRWSYRGVAQAVKKVRDQINALDFDIHSWRYNAACELVEAGC 293 Query: 303 TAHELMATYGWKTVDQAETYTK 324 +L+A ++ + YTK Sbjct: 294 -GDDLVAAVTGQSAAMVQHYTK 314 >gi|222149050|ref|YP_002550007.1| phage-related integrase [Agrobacterium vitis S4] gi|221736035|gb|ACM36998.1| phage-related integrase [Agrobacterium vitis S4] Length = 311 Score = 59.3 bits (142), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 57/231 (24%), Positives = 97/231 (41%), Gaps = 12/231 (5%) Query: 61 INSPRKKP---TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK 117 + R+KP +T+ LI EYR++A + +L+ ++R +E F I + GD + + Sbjct: 17 LTRDRQKPAIASTIGSLIDEYRQTARYKALSPSTRRDYERIFGAIRLEYGDCPLAAVEAR 76 Query: 118 HIRSGV----ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173 R G + K +P SA + + LF WA EY+ NP +ER +R EG R Sbjct: 77 GSRRGFLSWRDKMKDSPRSADMHIALLSRLFVWAKDSEYIMRNP---LERVERLHEGSRK 133 Query: 174 WTKEDMQQFKSFWSEGS-QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT- 231 Q +E S R + L++ R +D SIK KTG Sbjct: 134 DIIWSSNQIDKLLAEASPHIRDVAKVALWTMQRQADILTMPTLAFDGERLSIKQGKTGAR 193 Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282 + + PD L ++ +N+ Q ++ F ++ + + G+ Sbjct: 194 VRVIAAPDLMPMLRKAKEAQRQRVLVNSFGQNWTSSGFRASWRKEMARLGI 244 >gi|99081533|ref|YP_613687.1| phage integrase [Ruegeria sp. TM1040] gi|99037813|gb|ABF64425.1| hypothetical protein TM1040_1692 [Ruegeria sp. TM1040] Length = 348 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 56/248 (22%), Positives = 103/248 (41%), Gaps = 12/248 (4%) Query: 70 TLKWLISEYRKSAHWGS-LAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH 128 T + LI+ +R+ S LA ++ S+ + I+ K+ D D R+ T + IR+ Sbjct: 77 TWRQLITAWREDPRVQSRLADGTKRSYSRTMEAILDKNSDKDVRRTTRQAIRTAHSKMSE 136 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEY--VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 TP A ++L ++ +L+ + + + NP +E +++E PW + + + K Sbjct: 137 TPRKADKYLQTVSLLWNYGAEKLDWPLGPNPAKGIEHFGKQSE-YEPWPEWMVDKLKD-- 193 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246 R A E +L +G R + + H S+ +K+ I V P + ++ Sbjct: 194 -APEHVRTAAELILGTGQRPNAAIHMKFAHFDGEWMSVLDEKSDERIDVYCPPALREFIS 252 Query: 247 MTPIGKETFFINNDKQKMN----ATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGA 302 P N + ++ F W A +A HG+RK S A+AG Sbjct: 253 RAPRNGAYVLAKNLTEPRGYWSISSSFRTWRDALGPEAK-KYVLHGLRKLSIIRLAEAGC 311 Query: 303 TAHELMAT 310 + E+ A Sbjct: 312 SDAEIQAV 319 >gi|148549356|ref|YP_001269458.1| phage integrase family protein [Pseudomonas putida F1] gi|148513414|gb|ABQ80274.1| phage integrase family protein [Pseudomonas putida F1] Length = 326 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 54/229 (23%), Positives = 97/229 (42%), Gaps = 12/229 (5%) Query: 87 LAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKW 146 LA N+ +E+ +++ + +F+ R++ +H+ + TP+ A + ++ +R++F + Sbjct: 70 LAENTIKQYEAAAEKLKKYLAEFEPRQVLPRHVAALKLHMSDTPNMANRVISFLRMVFNY 129 Query: 147 AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ-PRLAFEFLLYSGLR 205 A+ Q+ V NPC + KR TE R D ++F + S R E +G R Sbjct: 130 ALEQQIVDSNPCTGI---KRHTEKKRDRYITD-EEFAAICDAASPYIRSILEMCYLTGQR 185 Query: 206 CSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPI------GKETFFINN 259 D + + + QKTG + V + +L+A T G F Sbjct: 186 IGDVLAIKLSDISEKGIAFDQQKTGAKLIVGMTPDLEQLIARTKAIPRKVRGLTLFCTRG 245 Query: 260 DKQKMNATQFSIWFKAKATKAGVNKSA-HGVRKFSATISADAGATAHEL 307 + ++ FK KA V + H +R S T + D G A +L Sbjct: 246 GGKPVSYETVKDAFKKACEKAKVTGATIHDLRAKSLTDTDDQGNDAQKL 294 >gi|296447647|ref|ZP_06889566.1| integrase family protein [Methylosinus trichosporium OB3b] gi|296254853|gb|EFH01961.1| integrase family protein [Methylosinus trichosporium OB3b] Length = 227 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 44/198 (22%), Positives = 83/198 (41%), Gaps = 12/198 (6%) Query: 140 MRVLFKWAVRQEYVAINPCLSVE---RPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF 196 + ++F W + Y+A NP ++ RP+ E RPWT D ++ + + R A Sbjct: 5 LSIIFGWGAERGYLADNPATGIKDIRRPRGAAEPNRPWT--DSERHAVLDAAPAHMRPAI 62 Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFF 256 ++ +GL D+ + ++ + + KTG + +P +L P Sbjct: 63 ALMMMTGLGPKDALTLPRNYWRDGEIATRRAKTGEPVFWPVPSPLDDVLKAAPRHDALTL 122 Query: 257 INNDKQK------MNATQFSIWFKAKATKA-GVNKSAHGVRKFSATISADAGATAHELMA 309 N + A+ ++ K + A G+ + +G+R A I +AG + Sbjct: 123 CANSAGRPWTLDGFRASWRTLRIKLEEKDAIGLGLTLYGLRHTVAVILREAGHDERTIAD 182 Query: 310 TYGWKTVDQAETYTKGAD 327 G +T++ A Y+KGAD Sbjct: 183 ALGQRTIEMARHYSKGAD 200 >gi|307317617|ref|ZP_07597056.1| integrase family protein [Sinorhizobium meliloti AK83] gi|306896775|gb|EFN27522.1| integrase family protein [Sinorhizobium meliloti AK83] Length = 400 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 65/283 (22%), Positives = 111/283 (39%), Gaps = 38/283 (13%) Query: 80 KSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR-KHTPSSAIQFLT 138 K WG + VN D D + +R V+S+ K TPS Sbjct: 117 KEGTWGDVPVN-----------------DMDDDDLEKIKLRLSVDSKGKPTPSKPWHVKV 159 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTE-----GIRPWTKEDMQQFKSFWSEGSQPR 193 ++ +F +A ++++ +P V+ + + G +PW E QQF++ GS R Sbjct: 160 VLKKIFFYARKRKWRQDDPTDLVKWKRGGAKNGGYVGWKPWPWELRQQFEARHPIGSAAR 219 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQ------------NNIFSIKTQKTGTIITVE-LPDG 240 + L+ G R D R L+ + I + K Q + + L Sbjct: 220 TCYALALFIGNRRGDVARLRWTDLKLVPFEDEWIYVFDYIQNKKVQNDDDMRQIRPLSRM 279 Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISA 298 + L P KE +N + + +AG+ K + HG+RK A Sbjct: 280 LSEALEPLPRDKEFVLLNGYGVPFSEKSLTGMMAHWTHQAGMPKGYTLHGLRKSYGGDLA 339 Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341 +AGA+ + G T+D+ Y KGA ++RL ++ +RR+ Sbjct: 340 EAGASEMQQKDMLGHTTLDEVVNYAKGASKLRLTVEGTRRLEE 382 >gi|315122559|ref|YP_004063048.1| Integrase [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495961|gb|ADR52560.1| Integrase [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 90 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 26/76 (34%), Positives = 44/76 (57%) Query: 153 VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRA 212 V + + V+ PK K + W E+++Q++ F G++ RLA E +L+ GLR SD R Sbjct: 7 VKADSTVGVKSPKLKIKEFVTWMIENIEQYRRFHPIGTKARLAMEMMLFLGLRRSDVMRV 66 Query: 213 GVQHLQNNIFSIKTQK 228 G QH+++ F K ++ Sbjct: 67 GKQHIKDGFFRSKLKR 82 >gi|153009120|ref|YP_001370335.1| phage integrase family protein [Ochrobactrum anthropi ATCC 49188] gi|151561008|gb|ABS14506.1| phage integrase family protein [Ochrobactrum anthropi ATCC 49188] Length = 361 Score = 56.6 bits (135), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 67/242 (27%), Positives = 106/242 (43%), Gaps = 31/242 (12%) Query: 4 SLRLPPFVTKERTRHGKIIYYFRKGHG-----RRIRLPY-PHESTFIPAYMSALTGSTPK 57 ++ LP V + +R GK +Y++ G G R++LP PH F A A S P Sbjct: 10 TVSLPKGVHRVVSR-GKEYFYYQTGRGTNHVGERVKLPNDPHSPEFWQAVRQAQGISGPV 68 Query: 58 REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISF-ESYFDQ--IIRKS-GDFDYRK 113 + T+ LI Y A W L +S E Y Q I+RK GD Sbjct: 69 VD---------GTIGALIDAY--EAAWPGLPRKLAVSTTEQYRRQLRIVRKVWGDLQAEA 117 Query: 114 ITTKHIRSGVES-RKHTPSSAIQFLTSMRVLFKWAVR-QEYVAINPCLSVERPKRKTEGI 171 + H+++ +E TP +A L ++R + +WA +E + +P V ++ EG Sbjct: 118 LRPSHVQALMEKIGATTPGAANNLLDALRAMCRWASGPRELLGRDPTQGVAH-FQQGEGH 176 Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLL--YSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229 +PWT + + +F + L ++L Y+G R SD R G + FS+ +KT Sbjct: 177 KPWTPDQL----AFADKNFTGMLHRAYVLARYTGQRISDVVRLGWNDIDEGGFSLPQKKT 232 Query: 230 GT 231 G Sbjct: 233 GV 234 >gi|260425689|ref|ZP_05779669.1| phage integrase family protein [Citreicella sp. SE45] gi|260423629|gb|EEX16879.1| phage integrase family protein [Citreicella sp. SE45] Length = 268 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 39/157 (24%), Positives = 77/157 (49%), Gaps = 2/157 (1%) Query: 90 NSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVR 149 ++R + E F + +G D K+ T H+ ++ P+ A + + ++ VL K+AV+ Sbjct: 9 HTRRNHERNFRYLRETAGKIDPAKLRTVHVYEMRDALADKPTDANRKIDTLLVLMKYAVQ 68 Query: 150 QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDS 209 ++ NP ++R + +PW + ++ F++ +EG + L FE LL +G R D Sbjct: 69 IGWIDRNPAQDIQRLSPTGKKRKPWPADLIEAFRAE-AEG-RALLLFEMLLGTGQRIDDV 126 Query: 210 CRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246 + L ++ F++ KT + + L D +LA Sbjct: 127 LKLRWSDLDDDGFTLVQGKTKAELYIPLTDRLRAVLA 163 >gi|149204078|ref|ZP_01881046.1| putative integrase [Roseovarius sp. TM1035] gi|149142520|gb|EDM30565.1| putative integrase [Roseovarius sp. TM1035] Length = 346 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 71/303 (23%), Positives = 122/303 (40%), Gaps = 27/303 (8%) Query: 20 KIIYYFRKGHGRRIRLP-YPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEY 78 ++ YY KG R LP P + F+ AY +A+ ++E TL+ +++ Y Sbjct: 21 RVYYYAWKGGPR---LPGKPGDPEFVDAYHTAVQTRRSQQE---------GTLQAILNAY 68 Query: 79 RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES-----RKHTPSSA 133 ++S + LA ++ + + +I + DF + + R S K + A Sbjct: 69 QESQRFLDLAPRTQRDYARHIRKIEGEYHDFPLSALLERAARGEFLSWRDRMAKTSRRQA 128 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR--KTEGIRP-WTKEDMQQFKSFWSEGS 190 + + ++ WA + V NPC ERP + ++E I WT ED F S Sbjct: 129 DYTYSVLALIIAWAYDRGLVPSNPC---ERPGKVYRSERIDSVWTSEDEAAFLKV--APS 183 Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPI 250 LAF L++G R D R ++ +KTG + + + +L T Sbjct: 184 HIGLAFMLALWTGQRQGDLLRLSWSAYDGERIRLRQRKTGARVEIPVGKPLRAMLDQTSR 243 Query: 251 GKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMA 309 T + K + F + +AGV + + H +R + T A AG + E+ A Sbjct: 244 SAVTILATSRKTSWTESGFRASWGKACKRAGVEDVTFHDLRGTAVTRLAVAGCSVPEIAA 303 Query: 310 TYG 312 G Sbjct: 304 ITG 306 >gi|206896382|ref|YP_002246413.1| tyrosine recombinase XerD [Coprothermobacter proteolyticus DSM 5265] gi|206738999|gb|ACI18077.1| tyrosine recombinase XerD [Coprothermobacter proteolyticus DSM 5265] Length = 288 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 48/167 (28%), Positives = 81/167 (48%), Gaps = 24/167 (14%) Query: 59 EYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD-FDYRKITTK 117 EY+ K P T+K IS+ + F+ +F++ +G+ F KIT Sbjct: 7 EYLVKKGKSPHTIKNYISDL--------------MQFQKWFEE---STGEQFSPGKITEI 49 Query: 118 HIRS----GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173 +RS + R+ PSS + L ++R W V+Q+ ++ NP VE P T R Sbjct: 50 DVRSYRSYLINIRQLKPSSIKRKLEAIRKFLDWTVKQDIISKNPAKEVEAPASVTLPPRS 109 Query: 174 WT-KEDMQQFKSFWSEGSQPRLA-FEFLLYSGLRCSDSCRAGVQHLQ 218 + KE ++ +SF+ EG++ +A FE L +G+R S+ C + +Q Sbjct: 110 LSEKEFLRLRRSFYKEGNERDIAIFEVLANTGIRVSELCSLKLSDVQ 156 >gi|220922617|ref|YP_002497919.1| integrase family protein [Methylobacterium nodulans ORS 2060] gi|219947224|gb|ACL57616.1| integrase family protein [Methylobacterium nodulans ORS 2060] Length = 421 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 72/356 (20%), Positives = 134/356 (37%), Gaps = 35/356 (9%) Query: 11 VTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70 + +RT G + H RR LP P + A+ AL + + + ++ +K T Sbjct: 56 LDAQRTDAGWTWAWVAPSH-RRHPLPDPRAEGGMEAFWRALDTAAEREKLGDAEDRK--T 112 Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130 LI+ YR+ A + L+ ++ +E + I GD +TT + ++S + TP Sbjct: 113 FAALIALYREHAIYTKLSALTQRDYERHLRLIAEFWGDDPVADLTTVDAQKAIDSFQATP 172 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 + A F + L + + + + N + E+ + + PW + F G Sbjct: 173 AVARYFRAVLSRLIAFGIPRGFATANVVEATEKVAHEVDPHEPWPDWAFETFFEHARVGL 232 Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPI 250 L LY+G R D + N + +KTG + V + + ++L T + Sbjct: 233 H--LPVYSALYTGQRSIDVIPMHRPAVGANAIEMIARKTGAAVYVPIHSEYREILTRTHV 290 Query: 251 GKETFFINNDKQKMNATQF---------SIWFKAKATKAGVNKSA------------HGV 289 + D + SI K + T A K A HG+ Sbjct: 291 DHPALHLREDGTPWTLGAYRTAWQRDFTSINAKGQPTTASPAKKAAMQRLREGGFVFHGL 350 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAET----YTKGADRIRLGIKNSRRISS 341 RK + + + G T E+ A V+ +E Y + ++ RL + +++ Sbjct: 351 RKNAVNMLLETGCTEAEVSA-----IVEMSEQMVRHYARDVNKRRLAVNAMKKLEE 401 >gi|77465633|ref|YP_355136.1| putative integrase [Rhodobacter sphaeroides 2.4.1] gi|77390051|gb|ABA81235.1| putative integrase [Rhodobacter sphaeroides 2.4.1] Length = 373 Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 68/287 (23%), Positives = 114/287 (39%), Gaps = 24/287 (8%) Query: 62 NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121 + P TL+ LI+ Y+K+ + LA +R + + QI GD + + +R Sbjct: 63 DRPVHHDGTLQALITAYQKTPAFTDLAEATRKGYIRHIRQIEADFGDMPVQALADPRVRG 122 Query: 122 GV------ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP-- 173 ++K S+ F R+L WA + + +NPC E+P R G R Sbjct: 123 EFLDWRDRLAQKSKRSADYAFSVLARIL-SWAHDRRKIPVNPC---EKPGRLYTGSRADS 178 Query: 174 -WTKEDMQQFKSFWSEGSQP-RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231 WT+ Q +F + +P RL F +++G R +D + ++ KTG Sbjct: 179 IWTEA---QIAAFLAVAPRPVRLPFLLAIWTGQRQADILQLTWTAYDGQAIRLRQSKTGR 235 Query: 232 IITVELPDGFMKLLAMTPIGKETFFI--NNDKQKMNATQFSIWFKAKATKAGVNK-SAHG 288 + + + + + + T I + Q + F F AG+ + H Sbjct: 236 HMLIPVAQPLREAMEEAKARRRTLTICETSRGQPWTSDGFKTSFGKAQASAGIEGVTFHD 295 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTK---GADRIRLG 332 +R + T A AG + E+ A G D +K G DR RLG Sbjct: 296 LRGTAVTFLALAGCSVPEIAALTGHSLKDAEGILSKHYLGRDR-RLG 341 >gi|119385147|ref|YP_916203.1| phage integrase family protein [Paracoccus denitrificans PD1222] gi|119374914|gb|ABL70507.1| phage integrase family protein [Paracoccus denitrificans PD1222] Length = 307 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 64/286 (22%), Positives = 108/286 (37%), Gaps = 17/286 (5%) Query: 48 MSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG 107 MSA +R P K L Y +S + L ++ ++ Y + II G Sbjct: 1 MSAFWDHYNRRLKGREPLPTKRNFKTLRLSYVESDAFKHLKPRTKRDYQKYMEHIISIWG 60 Query: 108 DFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWA-----VRQEYVAINPCLSVE 162 D D RKI T HI ++ A + VL A +++E+ NP + Sbjct: 61 DLDPRKIETHHIYKLHQANADHWRQANYLVQVFVVLLNHARLIGFLKKEHG--NPAKGIP 118 Query: 163 RPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222 K+ +G PW E +F+ +PRL +E + G R D+ + H+++ + Sbjct: 119 LFKQPGDGWEPWPDEVRAEFEELAP--PRPRLVYELSIGLGQRIGDTHKIRWDHIKDGEY 176 Query: 223 SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282 KT + V L + L+ + KE I + A ++ + + KA + Sbjct: 177 DFTQGKTDKPLLVPLTNRLAAYLST--VKKEGLTIVCGRDGRPADYRTVTEEMRKIKAAM 234 Query: 283 NKS------AHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 HG+RK + AG + A G V+ + Y Sbjct: 235 KHPETQRYVTHGLRKNATIELYQAGCDDEMVKAVTGHSGVEMLKKY 280 >gi|325292872|ref|YP_004278736.1| integrase family protein [Agrobacterium sp. H13-3] gi|325060725|gb|ADY64416.1| integrase family protein [Agrobacterium sp. H13-3] Length = 346 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 59/251 (23%), Positives = 103/251 (41%), Gaps = 11/251 (4%) Query: 68 PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV---- 123 PT L LI+ YR S+ + + +R ++ Y D+I + ++ R Sbjct: 65 PTDLSSLITLYRGSSDFRRTKLGTRHEYDRYLDKIRMQFDRLSLEELQQPSTRGAFKEWR 124 Query: 124 ESRKHTPSSA-IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 +S TP +A ++ +RVL +A + +++N R R T R W+ D+ F Sbjct: 125 DSLADTPRTADFAWMVLVRVL-SFAKDRGMISVNIAERGGRLYRSTRRDRTWSDADVAAF 183 Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242 ++ SQ RLA + L++G R D R KT + V P G++ Sbjct: 184 EAV--APSQMRLAIQLALWTGQRKGDLLRLSWCDFDGANLRFIQSKTKARVLV--PMGYL 239 Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAG 301 + + G + + F+ ++ KAG+ + + H +R + T A AG Sbjct: 240 ADVLCSQKGTGAILRTSRGSAWTSAGFNTSWRKCCAKAGITDLTFHDLRGTAITRMALAG 299 Query: 302 ATAHELMATYG 312 T E+ A G Sbjct: 300 CTVPEIAAVTG 310 >gi|209550058|ref|YP_002281975.1| integrase family protein [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209535814|gb|ACI55749.1| integrase family protein [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 345 Score = 52.8 bits (125), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 78/324 (24%), Positives = 127/324 (39%), Gaps = 29/324 (8%) Query: 23 YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSA 82 YY +G G P H A+ T +RE + + T+ LI E+RK+A Sbjct: 24 YYAWRGKG----APRMHAKPGTKAFTQEYVRLTREREKAS----EDGTIGSLIDEFRKTA 75 Query: 83 HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR----SGVESRKHTPSSAIQFLT 138 + LA ++R +E F I K F + I + R + ++ + +P SA + Sbjct: 76 GYMKLAASTRRDYERQFAMIRLKFEGFPIKAIEARGSRRIFLNWRDTMRDSPRSADMHIA 135 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEF 198 + LF WA E + NP VER T WT + Q +EG P L Sbjct: 136 LLSRLFSWAKGNEVILRNPLEEVERLHSGTRKDIIWTDD---QLAKLLTEGV-PHLRNVA 191 Query: 199 L--LYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-ELPDGFMKLLAMTPIGKETF 255 L L++ R +D SI+ KTG + V PD L ++ Sbjct: 192 LVALWTMQRQADILSMPTLAFDGERVSIRQGKTGARVRVMAAPDILPVLKDAKTTSRQRV 251 Query: 256 FINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHE----LMAT 310 +N+ Q ++ F ++ + + G+ + H +R + T + AH+ L++ Sbjct: 252 LVNSFGQNWTSSGFRASWRKEMARLGIKGVTFHDLRGTAITFAYANLDKAHDEKIKLISE 311 Query: 311 YGWKTVDQAET-----YTKGADRI 329 + D AE+ Y G D I Sbjct: 312 ISGHSQDDAESIIRKHYLAGQDVI 335 >gi|260593377|ref|ZP_05858835.1| putative integrase [Prevotella veroralis F0319] gi|260534653|gb|EEX17270.1| putative integrase [Prevotella veroralis F0319] Length = 408 Score = 52.8 bits (125), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 56/212 (26%), Positives = 92/212 (43%), Gaps = 26/212 (12%) Query: 143 LFKWAVRQEYVAINPC----LSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP--RLAF 196 + K+A+ + + NPC + V+ K + + + +++QQ + E P R AF Sbjct: 198 VIKYAIEHDVITKNPCNGIVIKVDDQILKKDVL---SLDEIQQLIATHDERQNPEIRRAF 254 Query: 197 EFLLYSGLR-CS--DSCRAGVQHLQNNIFSIKTQKT-----GTIITVELPDGFMKLLAM- 247 F LYSGLR C D A V + N + + KT + + + L DG ++L+ Sbjct: 255 IFCLYSGLRYCDVKDLTFANVDY-SNKLLKFEQSKTKGHSSSSGVIIPLNDGLLRLIGEP 313 Query: 248 TPIG-KETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATA 304 TP K+++ N +M W K+ AG+NK S H R A + GA Sbjct: 314 TPAQTKDSYIFNLPSYEMCLKSLQRWVKS----AGINKHISWHCARHSFAVNILNNGANI 369 Query: 305 HELMATYGWKTVDQAETYTKGADRIRLGIKNS 336 + + G + E YT+ D ++ NS Sbjct: 370 KTVASLLGHSGLKHTEKYTRAIDSLKQEAINS 401 >gi|163736786|ref|ZP_02144204.1| hypothetical protein RGBS107_01548 [Phaeobacter gallaeciensis BS107] gi|161389390|gb|EDQ13741.1| hypothetical protein RGBS107_01548 [Phaeobacter gallaeciensis BS107] Length = 157 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 36/126 (28%), Positives = 58/126 (46%), Gaps = 8/126 (6%) Query: 213 GVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA----MTPIGKETFFINNDKQKMNATQ 268 G +++ ++ + KTG ELP +M L P F +++ + Sbjct: 2 GRHNIKGDVIYYRRGKTGQ--DTELPLAYMPNLVAEIVQLPPDASVFLTHSNGKTYTVES 59 Query: 269 FSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 F WF+ + AG+ N AHG+RK AT A+AGA ++MA K+ +A Y + A Sbjct: 60 FGNWFRDQCVAAGLPDNCRAHGLRKHGATELAEAGANEFQIMAFLAHKSTHEALRYVRAA 119 Query: 327 DRIRLG 332 R +L Sbjct: 120 QRKKLA 125 >gi|254418822|ref|ZP_05032546.1| site-specific recombinase, phage integrase family protein [Brevundimonas sp. BAL3] gi|196184999|gb|EDX79975.1| site-specific recombinase, phage integrase family protein [Brevundimonas sp. BAL3] Length = 362 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 75/354 (21%), Positives = 146/354 (41%), Gaps = 30/354 (8%) Query: 1 MTPS-LRLP-PFVTKERTRHGKI-IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPK 57 MTP+ ++LP K R ++ IY++R+ G + + + + T A + + G Sbjct: 1 MTPAAIKLPGAHRVKMRLAGDRVGIYWYRR-RGGPLLMKFTGD-TLGDALRAEIAGQQDL 58 Query: 58 REYINSPRKKP----TTLKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYR 112 + +P +P T++ +++ ++ + + SL ++R + D+++ + GD R Sbjct: 59 IDAYATPTARPEPSVITVREIVTRFKAAPDGYLSLRDSTRKVWAPMLDRVVDEFGDLPAR 118 Query: 113 KITTKHIRSGV----ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE---RPK 165 + K +R + + TP SA + ++ + + V +E NP L V + Sbjct: 119 ALNAKGMRRAIIDWRDRYAATPRSADYGVQVLKRVLNFGVDRELCETNPALGVGTIYKNN 178 Query: 166 RKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK 225 R + I P E++ + S + RLA +G+R D + + Sbjct: 179 RADQIIEP---EELTAILANLSPAA--RLAVRLSAATGMRRGDLVDLRWSEVSDVSIERA 233 Query: 226 TQKTGTIITVELP------DGFMKLLAMTPIGK--ETFFINNDKQKMNATQFSIWFKAKA 277 K+ + + +P D +L + K TF + + K + + F A Sbjct: 234 AGKSTNGVRIMVPLIREARDVLTELRQIRDSAKVTSTFVLTSRKGPWHGDGLTSLFVRAA 293 Query: 278 TKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 KAGV KS H +R +AT AG E+ +GW+ + + DR R+ Sbjct: 294 AKAGVKKSLHDLRGTAATRFVIAGLKDEEIADIFGWEPDRVRKIRVRYVDRARV 347 >gi|302338068|ref|YP_003803274.1| tyrosine recombinase XerD [Spirochaeta smaragdinae DSM 11293] gi|301635253|gb|ADK80680.1| tyrosine recombinase XerD [Spirochaeta smaragdinae DSM 11293] Length = 311 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 73/290 (25%), Positives = 117/290 (40%), Gaps = 42/290 (14%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG-------------DFDYRKITT 116 T K L+ +Y AH G++ + +S ESY I R G D D T Sbjct: 2 TGKTLLRDY--DAHLGAVLSLAPLSRESYVSAISRLLGWLEEEGKNPFSASDADLVDYLT 59 Query: 117 KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176 G S KHT + + ++ MR F + V +EY NP V+ PK + Sbjct: 60 LRFEEG--SDKHTIA---KLVSIMRSFFDFLVSEEYRQDNPARMVDAPKLGRSLPSVLSI 114 Query: 177 EDMQQFKSFW----SEGSQPRLAFEFLLYSGLRCSDSC--RAGVQHLQNNIFSIKTQKTG 230 E+++ F + EG + R FE + +GLR S++ AG +L++ I + T K Sbjct: 115 EEVEAFLNAIPLETPEGLRDRALFELIYSAGLRVSEAVGLSAGSLYLRDGIIRV-TGKGS 173 Query: 231 TIITVELPDGFMK-----------LLAMTPIGKETFFINNDKQKMNATQFSIW--FKAKA 277 + L D K LLA + + F++ ++ ++ ++W FK + Sbjct: 174 KQRVIPLGDEARKWIGRYLTDARPLLAKSFHPTDALFLS--RRGTPLSRKNVWKRFKQFS 231 Query: 278 TKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 AGV+ H +R AT GA + G + + YT D Sbjct: 232 LLAGVDGKVHTLRHSFATHLLAGGADLRSVQELLGHSDISTTQIYTHIDD 281 >gi|315038190|ref|YP_004031758.1| tyrosine recombinase XerD [Lactobacillus amylovorus GRL 1112] gi|312276323|gb|ADQ58963.1| tyrosine recombinase XerD [Lactobacillus amylovorus GRL 1112] Length = 301 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 49/214 (22%), Positives = 89/214 (41%), Gaps = 23/214 (10%) Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQFKSFW 186 SS + ++SMR ++W RQ +NP L ++ PK++ ++E+ ++Q Sbjct: 72 SSISRLISSMRKFYQWLARQNIQKLNPMLEIDLPKKERRLPTALSREEVNRLLEQPDVEQ 131 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI--------ITVELP 238 G + R E L +G+R S+ +Q + ++ I+ G+ + + Sbjct: 132 KLGLRDRAILETLYATGMRVSELINLELQDIHEDLGLIRVLGKGSKERLIPISPVALHWI 191 Query: 239 DGFMK-----LLAMTPIGKETFFINNDKQKMNATQFSIW--FKAKATKAGVNKSA--HGV 289 D + K L+ + E F+NN K+ T+ +IW K AG+ K H + Sbjct: 192 DKYQKQVRDPLILKSGKNDEHLFLNNRGGKL--TRQAIWQMIKKYCQMAGITKDVTPHTL 249 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYT 323 R AT + GA + G + + YT Sbjct: 250 RHTFATHLLENGADLRVVQEILGHSDISTTQIYT 283 >gi|327183467|gb|AEA31914.1| tyrosine recombinase xerD [Lactobacillus amylovorus GRL 1118] Length = 301 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 49/214 (22%), Positives = 89/214 (41%), Gaps = 23/214 (10%) Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQFKSFW 186 SS + ++SMR ++W RQ +NP L ++ PK++ ++E+ ++Q Sbjct: 72 SSISRLISSMRKFYQWLARQNIQKLNPMLEIDLPKKERRLPTALSREEVNRLLEQPDVEQ 131 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI--------ITVELP 238 G + R E L +G+R S+ +Q + ++ I+ G+ + + Sbjct: 132 KLGLRDRAILETLYATGMRVSELINLELQDIHEDLGLIRVLGKGSKERLIPISPVALHWI 191 Query: 239 DGFMK-----LLAMTPIGKETFFINNDKQKMNATQFSIW--FKAKATKAGVNKSA--HGV 289 D + K L+ + E F+NN K+ T+ +IW K AG+ K H + Sbjct: 192 DKYQKQVRDPLILKSGKNDEHLFLNNRGGKL--TRQAIWQMIKKYCQMAGITKDVTPHTL 249 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYT 323 R AT + GA + G + + YT Sbjct: 250 RHTFATHLLENGADLRVVQEILGHSDISTTQIYT 283 >gi|169350488|ref|ZP_02867426.1| hypothetical protein CLOSPI_01256 [Clostridium spiroforme DSM 1552] gi|169292808|gb|EDS74941.1| hypothetical protein CLOSPI_01256 [Clostridium spiroforme DSM 1552] Length = 302 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 64/277 (23%), Positives = 115/277 (41%), Gaps = 25/277 (9%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQ--IIRKSGDFDYRKITTKHIRSGVE--SRK 127 ++LI E S + + + FESY D I K D I +H+R ++ S+K Sbjct: 12 QYLIVEKGLSKNTINAYIKDLNQFESYLDHNFQITKIND-----IAKEHVRLYIKELSKK 66 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + +S + L S+R+ F +A ++ + N + PK + +KE+MQ+ Sbjct: 67 ISATSINRKLVSLRMFFTFATKETVIDTNIMSDFDLPKIDKKLPIVLSKEEMQELLDSIE 126 Query: 188 EG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT---IITV----- 235 S+ R FE + +GLR S+ + L N+ +K G I+ + Sbjct: 127 INDHISSRNRCMFELMYATGLRVSELTNLTISSLNINMGYLKIIGKGDKERIVPLSNMAR 186 Query: 236 ELPDGFMKLLAMTPIGKET--FFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRK 291 + + ++K I K++ F NN K++ + I K + +NK S H +R Sbjct: 187 NILNDYLKHYRNEFIKKDSPLLFFNNHGNKLSREECYIILKQIIERTTINKKISPHTIRH 246 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 AT + GA + G + YT +++ Sbjct: 247 SFATHLLENGADLRSIQELLGHSNISTTTIYTHISNQ 283 >gi|293372055|ref|ZP_06618451.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] gi|19068096|gb|AAL29907.1| putative integrase [Bacteroides fragilis] gi|292632989|gb|EFF51573.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] Length = 407 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 47/207 (22%), Positives = 87/207 (42%), Gaps = 18/207 (8%) Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRP--WTKEDMQQFKSFWSEGSQP--RLAFEF 198 + ++A+ + + +PC SV K ++ +R + E++Q+ + + P R AF F Sbjct: 200 VIRYAIDHDVMLKDPCKSVT-CKVDSQMLRKDVLSPEEIQKLAACHYDNENPNVRRAFIF 258 Query: 199 LLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKT-----GTIITVELPDGFMKLLAMTPIG 251 LY GLR D +++ N + + KT + + + L DG + ++ P+ Sbjct: 259 CLYCGLRFCDVKDLTYKNVDYANRLLKFEQSKTKGHSASSGVVIPLNDGLLSIIGEAPVD 318 Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMA 309 K N + W K +AG++K S H R A + GA + + Sbjct: 319 KNCLIFNLPTYESCCKSVKRWVK----RAGIDKHISWHCARHSFAVNILNNGANIKTVAS 374 Query: 310 TYGWKTVDQAETYTKGADRIRLGIKNS 336 G + E YT+ D+++ NS Sbjct: 375 LLGHSGLKHTEKYTRAVDKLKEEAINS 401 >gi|99078559|ref|YP_611817.1| phage integrase [Ruegeria sp. TM1040] gi|99035697|gb|ABF62555.1| phage integrase [Ruegeria sp. TM1040] Length = 197 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 40/143 (27%), Positives = 64/143 (44%), Gaps = 2/143 (1%) Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKE 253 L FE L +G R SD R H++ + KT + +LA K Sbjct: 43 LIFELALGTGQRASDLTRMEWGHIEVGRIWVTQGKTNVRFWIPFTKRLSSVLAGVDTSKS 102 Query: 254 TFFINNDK-QKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATY 311 F + ++ ++N Q AG+ + S HG+R +A A+AG T H++ A Sbjct: 103 RFILTDESGHQLNYDQLQKQVIRVRRAAGLMDYSLHGLRDSAAGELAEAGCTDHQIAAIT 162 Query: 312 GWKTVDQAETYTKGADRIRLGIK 334 G K++ + Y+KGA + RL I+ Sbjct: 163 GHKSLSMVQKYSKGASQKRLAIE 185 >gi|330807709|ref|YP_004352171.1| Site-specific tyrosine recombinase XerD [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327375817|gb|AEA67167.1| Site-specific tyrosine recombinase XerD [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 298 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 56/239 (23%), Positives = 104/239 (43%), Gaps = 23/239 (9%) Query: 112 RKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171 R++ H+ +E + + P S +FL+ +R +++ +R++ +A++P L VE P+ Sbjct: 53 RELILDHLAWRLE-QNYKPRSTARFLSGLRGFYRYLLREKLIAVDPTLRVEMPQLGRPLP 111 Query: 172 RPWTKEDMQQFKSF--WSE--GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ 227 + ++ D++ + SE G + R E L GLR ++ ++ + ++ Sbjct: 112 KSLSEADVEALLAAPDLSEAIGQRDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVM 171 Query: 228 KTGT-----------IITVE--LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFK 274 G+ I+ VE + D +LL P + F + ++M F K Sbjct: 172 GKGSKERLVPMGEEAIVWVERYMRDARHELLGGRP--SDVLFPSLRGEQMTRQTFWHRIK 229 Query: 275 AKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 +A AG+NKS H +R AT + GA + G + + YT A R RL Sbjct: 230 HQAKVAGINKSLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-RARL 287 >gi|118586872|ref|ZP_01544306.1| integrase/recombinase [Oenococcus oeni ATCC BAA-1163] gi|118432704|gb|EAV39436.1| integrase/recombinase [Oenococcus oeni ATCC BAA-1163] Length = 302 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 47/211 (22%), Positives = 88/211 (41%), Gaps = 19/211 (9%) Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----W 186 +S + ++S+R F + + + I+P L V PK+ + + T +++ + Sbjct: 74 NSIVHMVSSLRKFFAYLSDDQQIQIDPMLKVTTPKKNSHLPQVLTATEIEAVLAVPDIST 133 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246 + G + R E + +G R S+ C + L + + I T G + +P G M LL Sbjct: 134 TLGLRNRALLETMYATGFRVSEICNLKLADLHDELGLITTIGKGQKQRI-VPIGEMSLLY 192 Query: 247 MTPIGKET------------FFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKF 292 ++ KE+ F+N+ +++ K A KAG++K S H +R Sbjct: 193 ISKYFKESRPILLKDKESPYLFLNDHGHRISRQGIFKLVKEIAIKAGIDKDISPHTLRHS 252 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYT 323 AT + GA + G + + YT Sbjct: 253 FATNLLENGADLRIVQELLGHSDISTTQIYT 283 >gi|189184607|ref|YP_001938392.1| putative integrase [Orientia tsutsugamushi str. Ikeda] gi|189181378|dbj|BAG41158.1| putative integrase [Orientia tsutsugamushi str. Ikeda] Length = 399 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 50/202 (24%), Positives = 91/202 (45%), Gaps = 10/202 (4%) Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 ++A QFL ++ +F A++ E + NP L +++ K + R + ++M +F + Sbjct: 175 ATANQFLITLSSIFNKAIKWELIDRNPTLKIDKHKMQARE-RRLSYDEMSKFLHVLCGEA 233 Query: 191 QPRL-AFEFL-LYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLL- 245 P + F L LY+G R ++ ++ I+ I K G + L D +++L Sbjct: 234 TPLIRDFALLALYTGARKTNVLEMEWDNIDFARKIWHIPKTKNGKAQNIPLTDEIIEILQ 293 Query: 246 AMTPIGKETFFINNDKQKMNATQFSI--WFKAKATKAGV-NKSAHGVRKFSATISADAGA 302 A K + ++ DK K ++ W+K KAG+ N H +R+ A+ AD GA Sbjct: 294 ARKLTSKSKWVLSTDKSKSGHLEYPYRGWYKI-CKKAGIKNLRIHDLRRTFASCMADEGA 352 Query: 303 TAHELMATYGWKTVDQAETYTK 324 + + A + YTK Sbjct: 353 GQYIISAALNHSDIKSTSIYTK 374 >gi|326387303|ref|ZP_08208913.1| hypothetical protein Y88_1353 [Novosphingobium nitrogenifigens DSM 19370] gi|326208484|gb|EGD59291.1| hypothetical protein Y88_1353 [Novosphingobium nitrogenifigens DSM 19370] Length = 303 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 65/299 (21%), Positives = 117/299 (39%), Gaps = 18/299 (6%) Query: 57 KREYINSPRKKP-TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT 115 K E SP K TL ++ YR+S + LA +++ + + D+I K G Sbjct: 9 KAEKARSPTKGALATLDDVLDRYRQSPEFSKLAESTKRDYRLWLDRISEKFGQAPIAAFE 68 Query: 116 TKHIRSGVESRKHT----PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171 + +R+ + ++T P +A + +M + WA + + +N + + + Sbjct: 69 DQRMRTEIIDWRNTWADQPRTADKASVTMATVLGWAQGEGILPVNIATGIRQLHHVNKAD 128 Query: 172 RPWTKEDMQQFK--------SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS 223 + W + + S +S+ L L +GLR D R + + Sbjct: 129 QIWEDRHWEAMRGSKDKNGRSLYSDHLDRALRLASL--TGLRLGDLVRVAWEDVGEKAII 186 Query: 224 IKTQK-TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282 + T+K G I LPD LL G N+ + + F+ KA G Sbjct: 187 LTTRKRKGRAIIPILPD-LRGLLDSIGTGAGPILRNSRGEPWTESGLGSVFQ-KAKPDGF 244 Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341 +++ H +R AT A G T E+ T GW +E ++ D R+ + R+S+ Sbjct: 245 DRTMHDLRGTYATWLAMRGLTDEEIARTIGWTAKRISEIRSRYVDEARVIVSMVERLSA 303 >gi|187940137|gb|ACD39269.1| phage integrase family protein [Pseudomonas aeruginosa] Length = 324 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 50/226 (22%), Positives = 90/226 (39%), Gaps = 9/226 (3%) Query: 88 AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWA 147 + N+ + + +++ +F R++ KH+ TP+ A + LT +RV+F A Sbjct: 71 SANTITQYRAVAERLKDMFAEFQPREVLPKHVAQVKTHMASTPNMANRTLTVLRVVFAQA 130 Query: 148 VRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCS 207 + V NPC+ ++ K G R +++ SE R FE +G R Sbjct: 131 LEWGEVDSNPCIGIKPHSEKKRG-RYLNDKELLSILDNCSEYM--RCIFELAYLTGQRIG 187 Query: 208 DSCRAGVQHLQNNIFSIKTQKTGTIITVEL-PD-----GFMKLLAMTPIGKETFFINNDK 261 D + + ++ + + QKTG+ + + + PD K L K K Sbjct: 188 DVLSIKLDDVSDDGIAFQQQKTGSKVLISMTPDLDAVVQRAKALPRPADAKNLICNRKGK 247 Query: 262 QKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHEL 307 Q AT W +A+ + H +R + T + G A +L Sbjct: 248 QVDYATTRDAWKRAREAAGVTDARIHDLRAKALTDAKKQGKDARKL 293 >gi|189184504|ref|YP_001938289.1| putative integrase [Orientia tsutsugamushi str. Ikeda] gi|189184591|ref|YP_001938376.1| putative integrase [Orientia tsutsugamushi str. Ikeda] gi|189181275|dbj|BAG41055.1| putative integrase [Orientia tsutsugamushi str. Ikeda] gi|189181362|dbj|BAG41142.1| putative integrase [Orientia tsutsugamushi str. Ikeda] Length = 399 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 50/202 (24%), Positives = 91/202 (45%), Gaps = 10/202 (4%) Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 ++A QFL ++ +F A++ E + NP L +++ K + R + ++M +F + Sbjct: 175 ATANQFLITLSSIFNKAIKWELIDRNPTLKIDKHKMQARE-RRLSYDEMSKFLHVLCGEA 233 Query: 191 QPRL-AFEFL-LYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLL- 245 P + F L LY+G R ++ ++ I+ I K G + L D +++L Sbjct: 234 TPLIRDFALLALYTGARKTNVLEMEWDNIDFVRKIWHIPKTKNGKAQNIPLTDEIIEILQ 293 Query: 246 AMTPIGKETFFINNDKQKMNATQFSI--WFKAKATKAGV-NKSAHGVRKFSATISADAGA 302 A K + ++ DK K ++ W+K KAG+ N H +R+ A+ AD GA Sbjct: 294 ARKLTSKSKWVLSTDKSKSGHLEYPYRGWYKI-CKKAGIKNLRIHDLRRTFASCMADEGA 352 Query: 303 TAHELMATYGWKTVDQAETYTK 324 + + A + YTK Sbjct: 353 GQYIISAALNHSDIKSTSIYTK 374 >gi|116491033|ref|YP_810577.1| tyrosine recombinase XerD subunit [Oenococcus oeni PSU-1] gi|290890513|ref|ZP_06553588.1| hypothetical protein AWRIB429_0978 [Oenococcus oeni AWRIB429] gi|116091758|gb|ABJ56912.1| tyrosine recombinase XerD subunit [Oenococcus oeni PSU-1] gi|290479909|gb|EFD88558.1| hypothetical protein AWRIB429_0978 [Oenococcus oeni AWRIB429] Length = 302 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 47/211 (22%), Positives = 88/211 (41%), Gaps = 19/211 (9%) Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----W 186 +S + ++S+R F + + + I+P L V PK+ + + T +++ + Sbjct: 74 NSIVHMVSSLRKFFAYLSDDQQIQIDPMLKVTTPKKNSHLPQVLTATEIEAVLAVPDIST 133 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246 + G + R E + +G R S+ C + L + + I T G + +P G M LL Sbjct: 134 TLGLRNRALLETMYATGFRVSEICNLKLADLHDELGLITTIGKGQKQRI-VPIGEMSLLY 192 Query: 247 MTPIGKET------------FFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKF 292 ++ KE+ F+N+ +++ K A KAG++K S H +R Sbjct: 193 ISKYFKESRPILLKDKESPYLFLNDHGHRISRQGIFKLVKEIAIKAGIDKDISPHTLRHS 252 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYT 323 AT + GA + G + + YT Sbjct: 253 FATNLLENGADLRIVQELLGHSDISTTQIYT 283 >gi|302346034|ref|YP_003814387.1| phage integrase, N-terminal SAM domain protein [Prevotella melaninogenica ATCC 25845] gi|302149123|gb|ADK95385.1| phage integrase, N-terminal SAM domain protein [Prevotella melaninogenica ATCC 25845] Length = 314 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 60/276 (21%), Positives = 113/276 (40%), Gaps = 25/276 (9%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIR-----KSGDFDYRKITTKHIRSGVES 125 K ++S YR+ +VN+ ++ D++ R + D + +H + + Sbjct: 8 KDIVSRYRRYLKLEKGYSVNTLDAYMRDVDKLFRYLAVEQVDVLDVKLEDLEHFAAFISD 67 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK-- 183 P S + L+ +R +++ V Y+ ++P +E PK+ + ++ + Sbjct: 68 LGIGPRSLARILSGVRQFYRFLVIDGYLEVDPTELLESPKQPDHLPEVLSTAEVDLLEQA 127 Query: 184 ---SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT---IITV-- 235 S W EG + R E L GLR S+ + +L I+ G+ ++ + Sbjct: 128 IDLSKW-EGHRNRAIIEVLFSCGLRVSELTNLKLSNLYIEEQYIRVMGKGSKERLVPISP 186 Query: 236 ----ELPDGFM--KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAH 287 EL F ++ + P ++ F+N Q + T I K A +AG+ K S H Sbjct: 187 RALDELSYWFADRNVMKIKPGEEDYVFLNRRGQHLTRTMILIMIKRYAVEAGIKKTISPH 246 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 +R AT + GA + A G +++ E YT Sbjct: 247 TLRHSFATSLLEGGADLRAIQAMLGHESIGTTEIYT 282 >gi|56459934|ref|YP_155215.1| site-specific recombinase [Idiomarina loihiensis L2TR] gi|56178944|gb|AAV81666.1| Site-specific recombinase [Idiomarina loihiensis L2TR] Length = 300 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 51/214 (23%), Positives = 96/214 (44%), Gaps = 16/214 (7%) Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQFKS 184 +P S +FL+S + F++AV+Q++VA++P ++RPK ++ED ++Q + Sbjct: 72 SPRSTSRFLSSTKKFFQFAVKQQWVAVDPTARLKRPKLPQSIPHSLSEEDVISLLEQPDT 131 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT---II-----TVE 236 G + R E L +GLR ++ R L ++ G ++ +E Sbjct: 132 ETPIGLRDRTMLEVLYATGLRVTELIRLQYDQLSRQQGLVRVIGKGNKERLVPLGEDALE 191 Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAK--ATKAGV--NKSAHGVRKF 292 D ++K K + +I ++ T+ + W++ K A +AG+ + S H +R Sbjct: 192 WLDNYLKHGRPAITDKSSPWIFVTQRGSLLTRQAFWYRLKHYAEEAGIYAHLSPHTLRHA 251 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGA 326 AT + GA L G + + YT+ A Sbjct: 252 FATHLLNHGADLRVLQLLLGHSDLSTTQIYTQVA 285 >gi|220921956|ref|YP_002497257.1| integrase family protein [Methylobacterium nodulans ORS 2060] gi|219946562|gb|ACL56954.1| integrase family protein [Methylobacterium nodulans ORS 2060] Length = 353 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 83/350 (23%), Positives = 137/350 (39%), Gaps = 41/350 (11%) Query: 21 IIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRK 80 I Y + + G R L PHE P + +AL K + +++P T L+ YR Sbjct: 17 ITYAYDRASGER--LTPPHE-IGTPGWWTALQAIRAKAK--PKVKEEPGTWGALVISYRS 71 Query: 81 SAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKIT--TKHIRSGVES---RKHTPSSAI 134 S + LA +R +++ D + G R I+ T+ +G+ +K A Sbjct: 72 SPRFLNDLAPRTRADYQTVLDHL----GKLHDRPISAWTRGFVAGLRDEAQKKKGRRFAN 127 Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVE---RPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191 L+ + V+F + +E + NP V+ RPK RPW+ E+ + + Sbjct: 128 YVLSVVSVVFAHGIEREMASTNPVRDVKKLRRPKGAPRANRPWSPEEWDAVVA----AAS 183 Query: 192 PRLAFEFLLYS--GLRCSDSCRAGVQ--HLQNNIFSIKTQKTGTIITVELPDGFMKLLAM 247 P L +L G R ++ A + S + K+G + V+ P+ + LA Sbjct: 184 PELRAAIMLGGVLGYRQGEALSAKRDSWNRAAGTLSRISAKSGKPVKVQAPEIVAQALAA 243 Query: 248 TPI-GKETFFINNDKQKMNATQF-SIWFKAKATKAGVNKSA-----HGVRKFSATISADA 300 P T +N+ Q F +F+ T K A HG+R +AT Sbjct: 244 LPSHSATTLLVNSRGQPWKEDGFRGSFFRLIRTLEAEGKIADGLTFHGLRHTAATQMRQL 303 Query: 301 GATAHELMATYGWKTVDQAETYTKGADR--------IRLGIKNSRRISSV 342 G + G +T A Y++ AD +RL +N +R SV Sbjct: 304 GFDTRTIADMLGQETEGMAAHYSREADLEPKLRGVVVRLDQENRKRTGSV 353 >gi|288803482|ref|ZP_06408914.1| integrase/recombinase XerD [Prevotella melaninogenica D18] gi|288334092|gb|EFC72535.1| integrase/recombinase XerD [Prevotella melaninogenica D18] Length = 314 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 50/212 (23%), Positives = 89/212 (41%), Gaps = 19/212 (8%) Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK-----S 184 P S + L+ +R +++ V Y+ ++P +E PK+ + ++ + S Sbjct: 72 PRSLARILSGVRQFYRFLVIDGYLEVDPTELLESPKQPDHLPEVLSTAEVDLLEQAIDLS 131 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT---IITV------ 235 W EG + R E L GLR S+ + +L I+ G+ ++ + Sbjct: 132 KW-EGHRNRAIIEVLFSCGLRVSELTNLKLSNLYIEEQYIRVMGKGSKERLVPISPRALD 190 Query: 236 ELPDGFM--KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRK 291 EL F ++ + P ++ F+N Q + T I K A +AG+ K S H +R Sbjct: 191 ELNYWFADRNVMKIKPGEEDYVFLNRRGQHLTRTMILIMIKRYAVEAGIKKTISPHTLRH 250 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYT 323 AT + GA + A G +++ E YT Sbjct: 251 SFATSLLEGGADLRAIQAMLGHESIGTTEIYT 282 >gi|54399934|gb|AAV34206.1| site-specific recombinase [Pseudomonas fluorescens] Length = 298 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 56/239 (23%), Positives = 104/239 (43%), Gaps = 23/239 (9%) Query: 112 RKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171 R++ H+ +E + + P S +FL+ +R +++ +R++ +A++P L VE P+ Sbjct: 53 RELILDHLAWRLE-QNYKPRSTARFLSGLRGFYRYLLREKLIAVDPTLRVEMPQLGRPLP 111 Query: 172 RPWTKEDMQQFKSF--WSE--GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ 227 + ++ D++ + SE G + R E L GLR ++ ++ + ++ Sbjct: 112 KSLSEADVEALLAAPDLSEAIGQRDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVM 171 Query: 228 KTGT-----------IITVE--LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFK 274 G+ I+ VE + D +LL P + F + ++M F K Sbjct: 172 GKGSKERLVPMGEEAIVWVERYVRDARHELLGGRP--SDALFPSLRGEQMTRQTFWHRIK 229 Query: 275 AKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 +A AG+NKS H +R AT + GA + G + + YT A R RL Sbjct: 230 HQAKVAGINKSLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-RARL 287 >gi|325278828|ref|YP_004251370.1| integrase family protein [Odoribacter splanchnicus DSM 20712] gi|324310637|gb|ADY31190.1| integrase family protein [Odoribacter splanchnicus DSM 20712] Length = 409 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 55/191 (28%), Positives = 94/191 (49%), Gaps = 28/191 (14%) Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 RK P++ + L + + K+AV+ Y+ NP + ER K T+ I T E+++Q ++ Sbjct: 177 DRKQIPNTVNKTLQKVIEVAKYAVKCGYLEKNPFNAYERLKVGTKSITFLTDEEIEQLEN 236 Query: 185 FWSEGSQPRLA-----FEFLLYSGL---RCSDSCRAG-VQHLQNNI-FSIKTQKTGTIIT 234 + +Q RL + F +Y+GL ++ C+A ++ L N I ++ QKTG + Sbjct: 237 Y--HFTQHRLEQVKDLYLFSVYTGLAYREAANLCKAHLIKGLDNEIWINMTRQKTGNSME 294 Query: 235 VELPDGFMKLLAMTPIGKETF------FINNDKQKMNATQFSIWFKAKATKAGVNK--SA 286 + L K+L+ G E I+N Q+MN+ + K A G+NK + Sbjct: 295 IPLLPPAQKILSKYITGNEPINKPLLPMISN--QRMNS-----YLKEIAEILGINKRLTT 347 Query: 287 HGVRK-FSATI 296 H RK F++TI Sbjct: 348 HTARKTFASTI 358 >gi|325956642|ref|YP_004292054.1| tyrosine recombinase xerD [Lactobacillus acidophilus 30SC] gi|325333207|gb|ADZ07115.1| tyrosine recombinase xerD [Lactobacillus acidophilus 30SC] Length = 301 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 49/214 (22%), Positives = 88/214 (41%), Gaps = 23/214 (10%) Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQFKSFW 186 SS + ++SMR ++W RQ +NP L ++ PK++ + E+ ++Q Sbjct: 72 SSISRLISSMRKFYQWLARQNIQKLNPMLEIDLPKKERRLPTALSGEEVNRLLEQPDVEQ 131 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI--------ITVELP 238 G + R E L +G+R S+ +Q + ++ I+ G+ + + Sbjct: 132 KLGLRDRAILETLYATGMRVSELINLELQDIHEDLGLIRVLGKGSKERLIPISPVALHWI 191 Query: 239 DGFMK-----LLAMTPIGKETFFINNDKQKMNATQFSIW--FKAKATKAGVNKSA--HGV 289 D + K L+ + E F+NN K+ T+ +IW K AG+ K H + Sbjct: 192 DKYQKQVRDPLILKSGKNDEHLFLNNRGGKL--TRQAIWQMIKKYCQMAGITKDVTPHTL 249 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYT 323 R AT + GA + G + + YT Sbjct: 250 RHTFATHLLENGADLRVVQEILGHSDISTTQIYT 283 >gi|85708305|ref|ZP_01039371.1| putative integrase [Erythrobacter sp. NAP1] gi|85689839|gb|EAQ29842.1| putative integrase [Erythrobacter sp. NAP1] Length = 351 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 72/325 (22%), Positives = 121/325 (37%), Gaps = 43/325 (13%) Query: 12 TKERTRHGKII-YYFRKGHGRRIRLPYPHESTFIPAYMSALTG--STPKREYINSPRKKP 68 K+R GK + YY+ G R+ P FI +Y +AL +TP P Sbjct: 11 VKKRLASGKTVTYYYAWKGGPRLE-GEPGSPKFIESYNAALATRFTTP-----------P 58 Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--- 125 L+ ++ +Y+ S + LA +R ++ + I + GDF + + R + Sbjct: 59 DQLRSILKQYQASHSFTDLADRTRQDYKKHLRTIEAEYGDFPIEALADRRTRGEFLAWRE 118 Query: 126 --RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 K++ A + + WA + + +NPC R R T + WT ED Q+F Sbjct: 119 RLAKNSRRQADYAYAVLARVLSWASNRGFAPLNPCERPGRLYRSTRSTKVWTAEDEQRFY 178 Query: 184 SFWSEGSQPR---LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240 PR L L++G R D + QKT + V++P G Sbjct: 179 KH-----APRHLHLPLLMALWTGQRQGDLLALRWSAYDGQYLRLTQQKTK--VRVQIPAG 231 Query: 241 --------FMKLLAMTPIGK----ETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAH 287 ++ P + +N A F ++ +AG+ + + H Sbjct: 232 KPLKAELDALREARTKPANELAANSHILLNTRHSPWTAAGFRASWRKACKQAGIEDLTFH 291 Query: 288 GVRKFSATISADAGATAHELMATYG 312 +R + T A AG T E+ G Sbjct: 292 DLRGTAVTRLAIAGCTIPEIATITG 316 >gi|146277418|ref|YP_001167577.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17025] gi|145555659|gb|ABP70272.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17025] Length = 336 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 60/282 (21%), Positives = 104/282 (36%), Gaps = 15/282 (5%) Query: 61 INSPRKKPTTLKW--LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH 118 + S +K+ W I R+S W + ++ R E + + K G D ++T Sbjct: 46 VMSGKKQEAKRSWGAAIEVLRQSDRWAAKSLRYRQDLEPVLEYLGEKIGKRDVARLTQAD 105 Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER---PKRKTEGIRPWT 175 I ++ KH A ++ ++ K +R+ ++ NP +ER PK + PW Sbjct: 106 IYEAMDRNKHRVRFANYIPVAISMIAKEVIRRRWLEDNPAKGIERLKVPKERQRPHVPWP 165 Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG----- 230 + +F++ G RL FE + + R SD + ++ KTG Sbjct: 166 DAAVVKFRA--EAGDLERLIFEIGVGTVQRPSDWIGFRWGDYDGDSLVLRQGKTGKPLVL 223 Query: 231 --TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAH 287 T+ D L P+ D +M+ + + A+ + G+ H Sbjct: 224 PCTVALKAALDKAKAALPFAPMPSRHIITKQDGSRMDYRRLAEIMLAERARLGLEAYDLH 283 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 +R A AG E+MA G T Y A +I Sbjct: 284 ALRYRGVMELAWAGCDDDEIMAYSGHSTKAMVRKYAGEARQI 325 >gi|257080952|ref|ZP_05575313.1| prophage lambdaba03 [Enterococcus faecalis E1Sol] gi|256988982|gb|EEU76284.1| prophage lambdaba03 [Enterococcus faecalis E1Sol] Length = 301 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 59/269 (21%), Positives = 109/269 (40%), Gaps = 49/269 (18%) Query: 105 KSGDFDYRKITTKHIRSGV--ESRKHTPSSAIQFLTS-MRVLFKWAVRQEYVAINPCLSV 161 KS + + +I KHI+S + K +S I S ++ LF + + ++Y+ NP + + Sbjct: 39 KSINVEPSQIEKKHIKSWIIDMQEKEMQASTINVSVSRLKKLFDYMLIEKYIEYNPFVDI 98 Query: 162 ERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA------FEFLLYSGLRCSDSCRAGVQ 215 ER K + + I P +++Q + + +A ++ GLR S+ C + Sbjct: 99 ERLKEQRKVIYPLNDYEIKQMLTVAKKHPYKHIAQRNVVILMLMIECGLRISEVCEIRDE 158 Query: 216 HLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKE-------------------TFF 256 + NN I+ K D + +A++PI K+ TF Sbjct: 159 DIMNNQIIIRKSKNN-------KD---RAVAVSPILKKEIIKYHRIKKRKYGLLEGNTFI 208 Query: 257 INNDKQKMNATQFSIWFKAKATKAGVNK------SAHGVRKFSATISADAGATAHELMAT 310 ++N +K+N SIW + K ++ S H +R A++ G + L Sbjct: 209 VSNLGKKLNEK--SIWQIMQEIKKQIDIRDCVRFSGHTLRHTYASMQLRNGLDIYTLSLN 266 Query: 311 YGWKTVDQAETYTK---GADRIRLGIKNS 336 G +++ + Y + D I IK S Sbjct: 267 MGHSSIEMTQRYVQTLSSEDFIEKSIKTS 295 >gi|126739278|ref|ZP_01754972.1| Integrase [Roseobacter sp. SK209-2-6] gi|126719895|gb|EBA16603.1| Integrase [Roseobacter sp. SK209-2-6] Length = 339 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 42/161 (26%), Positives = 68/161 (42%), Gaps = 7/161 (4%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133 LI+ R++ W + + R E F + K G D ++T I +E KH A Sbjct: 64 LIAAMRETDKWANFSPRYRKDLEPVFTYLTEKIGKADVVRLTQADIYDAMEKNKHRVRFA 123 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVE---RPKRKTEGIRPWTKEDMQQFKSFWSEG- 189 T++ +L K A+R+ + NP + +E PK + + PWT +++ + EG Sbjct: 124 NYIPTAISMLSKLAIRKRWRKDNPAIDIEPLKVPKARKKPHVPWTDWAVERLR---DEGE 180 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230 S P L FE + S R D ++ KTG Sbjct: 181 SLPVLIFEIGVGSVQRPGDWVDFQWGDYDGETLKLRQNKTG 221 >gi|282879077|ref|ZP_06287837.1| putative tyrosine recombinase XerD [Prevotella buccalis ATCC 35310] gi|281298811|gb|EFA91220.1| putative tyrosine recombinase XerD [Prevotella buccalis ATCC 35310] Length = 321 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 49/232 (21%), Positives = 92/232 (39%), Gaps = 17/232 (7%) Query: 109 FDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168 D R +H + P+S + L+ +R +++ V Y+ +P +E P+ Sbjct: 52 LDVRLEDLQHFAGQLHEHDIGPTSQARILSGVRSFYRFLVLDGYIEQDPTELLESPRLGE 111 Query: 169 EGIRPWTKEDMQQFKSFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224 + E++ ++ EG + + E L GLR S+ + +L + I Sbjct: 112 HLPEVLSTEEVDMIENSIDLSKPEGQRNKAIIEVLFSCGLRVSELVNLQLSNLYLDEGFI 171 Query: 225 KTQKTGT---IITV------ELPDGFM--KLLAMTPIGKETFFINNDKQKMNATQFSIWF 273 + G ++ + EL F+ L+ + P ++ F+N + T I Sbjct: 172 RVTGKGNKERLVPISPKAIKELNLWFLDRNLMKIKPGEQDYVFLNRRGAHLTRTMILIML 231 Query: 274 KAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 K +A +AG+ K S H +R AT GA + G +++ E YT Sbjct: 232 KRQAQEAGIQKTISPHTLRHSFATELLKGGADLRAIQVMLGHESIGTTEIYT 283 >gi|303326777|ref|ZP_07357219.1| tyrosine recombinase XerD [Desulfovibrio sp. 3_1_syn3] gi|302862765|gb|EFL85697.1| tyrosine recombinase XerD [Desulfovibrio sp. 3_1_syn3] Length = 309 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 51/224 (22%), Positives = 85/224 (37%), Gaps = 16/224 (7%) Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 + SR +T + + L+++R F +AV + + NP L +E PK ++E+M++ Sbjct: 74 LRSRGNTGRTLARRLSALRAFFAFAVEEGTLKTNPALLLENPKLPQHLPEVLSREEMEKL 133 Query: 183 KSF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT------- 231 G + R E L +GLR S+ C V L ++ G Sbjct: 134 LVLPDMDEKSGRRDRCMLEMLYAAGLRVSELCNLSVADLDLQRGLVRVFGKGAKERLVPL 193 Query: 232 --IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAH 287 +I L D + G F+N + ++ K AG+ + S H Sbjct: 194 HDMIQALLGDYLRSWRPLFSPGGNQLFVNRSGRALSRQYIWKMVKKYTLLAGIRRAVSPH 253 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIR 330 R AT + GA + G + E YT A+R+R Sbjct: 254 TFRHSFATHLLEGGADLRAVQLLLGHADISATEIYTHVQAERLR 297 >gi|262038503|ref|ZP_06011872.1| putative integrase [Leptotrichia goodfellowii F0264] gi|261747372|gb|EEY34842.1| putative integrase [Leptotrichia goodfellowii F0264] Length = 356 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 47/162 (29%), Positives = 77/162 (47%), Gaps = 10/162 (6%) Query: 53 GSTPKREY---INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF 109 G K++Y NS + TL LI +YRK+ L N++ YF+ II+ GD Sbjct: 40 GEIAKKDYEQTSNSFSQSIATLSDLIEDYRKNYINIFLRENTKRIRNYYFNIIIKDIGDT 99 Query: 110 DYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169 +K+ + + + K P++ +FL S LF +AVR E ++ NP +V PK + Sbjct: 100 KLQKMNVRFFQDYIVKTKD-PNNIKKFLNS---LFNYAVRVELISKNPIKNVIVPKAEKI 155 Query: 170 GIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY-SGLRCSDSC 210 T ED++ K+ E + F +Y +G+R S+ Sbjct: 156 DFDLITPEDIEIIKNM--EIREVLKDFILFIYLTGVRPSEGL 195 >gi|212692864|ref|ZP_03300992.1| hypothetical protein BACDOR_02364 [Bacteroides dorei DSM 17855] gi|212664653|gb|EEB25225.1| hypothetical protein BACDOR_02364 [Bacteroides dorei DSM 17855] Length = 407 Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 47/207 (22%), Positives = 87/207 (42%), Gaps = 18/207 (8%) Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRP--WTKEDMQQFKSFWSEGSQP--RLAFEF 198 + ++A+ + + +PC SV K ++ +R + E++Q+ + + P R AF F Sbjct: 200 VIRYAIDHDVMLKDPCKSVT-CKVDSQMLRKDVLSPEEIQKLAACHYDNENPNVRRAFIF 258 Query: 199 LLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKT-----GTIITVELPDGFMKLLAMTPIG 251 LYSGLR D +++ N + + KT + + + L DG + ++ P Sbjct: 259 CLYSGLRFCDVKDLTYKNVDYANRLLKFEQSKTKGHSASSGVVIPLNDGLLSIIGEAPAD 318 Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMA 309 K + + W K +AG++K S H R A + GA + + Sbjct: 319 KNCLIFDLPTYESCCKSVKRWVK----RAGIDKHISWHCARHSFAVNILNNGANIKTVAS 374 Query: 310 TYGWKTVDQAETYTKGADRIRLGIKNS 336 G + E YT+ D+++ NS Sbjct: 375 LLGHSGLKHTEKYTRAVDKLKEEAINS 401 >gi|295692872|ref|YP_003601482.1| tyrosine recombinase xerd [Lactobacillus crispatus ST1] gi|295030978|emb|CBL50457.1| Tyrosine recombinase xerD [Lactobacillus crispatus ST1] Length = 301 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 52/224 (23%), Positives = 95/224 (42%), Gaps = 23/224 (10%) Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----QQFKSFW 186 SS + ++SMR ++W RQ +NP L ++ PK++ ++ +M +Q + Sbjct: 72 SSISRLISSMRKFYQWLARQNIQKLNPMLEIDLPKKERRLPTALSQAEMNRLLEQPNTKR 131 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT------IITVELP-- 238 G + R E L +G+R S+ +Q L +N+ ++ G I V L Sbjct: 132 KLGIRDRAILETLYATGMRVSELINLELQDLHDNLGLVRVLGKGEKERLIPISPVALDWI 191 Query: 239 ---DGFMKLLAMTPIGK--ETFFINNDKQKMNATQFSIW--FKAKATKAGVNKSA--HGV 289 + ++ + +GK E F+NN +K+ T+ +IW K A + K H + Sbjct: 192 KKYENEVRDPLILQVGKSDEHIFLNNRGKKI--TRQAIWQMIKKYCQMAAITKDVTPHTL 249 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 R AT + GA + G + + YT + + L + Sbjct: 250 RHTFATHLLENGADLRVVQEILGHSDISTTQIYTNLSQKQILNV 293 >gi|238786426|ref|ZP_04630347.1| Phage integrase [Yersinia bercovieri ATCC 43970] gi|238712669|gb|EEQ04760.1| Phage integrase [Yersinia bercovieri ATCC 43970] Length = 270 Score = 49.7 bits (117), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 44/163 (26%), Positives = 72/163 (44%), Gaps = 15/163 (9%) Query: 7 LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66 +PP R R GK Y FR GR IRL E + +++ E + +K Sbjct: 13 MPP-----RVRKGKSAYEFRAIDGRTIRL-CSFECSQADVWIAF--------EKLMISQK 58 Query: 67 KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126 + +T LI+E+ S + LA +++ + Y +II G I +HIR ++ R Sbjct: 59 EDSTFAGLINEFLLSGDFCELAFDTQKDYRKYSSKIIAVFGKMSPDNIKPEHIRKYMDKR 118 Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168 + A + + M +F+W V +NPC V++ K K Sbjct: 119 GAKSRVQANREKSFMSRVFRWGYEHGKVKLNPCQGVKQFKEKA 161 >gi|77457252|ref|YP_346757.1| site-specific tyrosine recombinase XerD [Pseudomonas fluorescens Pf0-1] gi|77381255|gb|ABA72768.1| integrase/recombinase [Pseudomonas fluorescens Pf0-1] Length = 298 Score = 49.3 bits (116), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 55/239 (23%), Positives = 104/239 (43%), Gaps = 23/239 (9%) Query: 112 RKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171 R++ H+ +E + + P S +FL+ +R +++ +R++ ++++P L V+ P+ Sbjct: 53 RELILDHLAWRLE-QNYKPRSTARFLSGVRGFYRYLLREKLISVDPTLRVDMPQLGRPLP 111 Query: 172 RPWTKEDMQQFKSF--WSE--GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ 227 + ++ D++ SE G + R E L GLR ++ ++ + ++ Sbjct: 112 KSLSEADVEALLKAPDLSEAIGQRDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVM 171 Query: 228 KTGT-----------IITVE--LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFK 274 G+ I+ VE L DG +LL P + F + ++M F K Sbjct: 172 GKGSKERLVPMGEEAIVWVERYLRDGRGELLGGRP--SDVLFPSQRGEQMTRQTFWHRIK 229 Query: 275 AKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 +A AG++KS H +R AT + GA + G + + YT A R RL Sbjct: 230 HQAKVAGISKSLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-RARL 287 >gi|260593346|ref|ZP_05858804.1| integrase/recombinase XerD [Prevotella veroralis F0319] gi|260534622|gb|EEX17239.1| integrase/recombinase XerD [Prevotella veroralis F0319] Length = 314 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 47/213 (22%), Positives = 87/213 (40%), Gaps = 21/213 (9%) Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK-----S 184 P S + L+ +R +++ V Y+ ++P +E PK+ + ++ + S Sbjct: 72 PRSLARILSGVRQFYRFLVLDGYLEVDPTELLESPKQPNHLPEVLSTAEVDLLEQAIDLS 131 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT---IITVELPDGF 241 W EG + R E L GLR S+ + +L ++ G+ ++ + P Sbjct: 132 KW-EGHRNRAIIEVLFSCGLRVSELTHLTLSNLYIEEQYLRVLGKGSKERLVPIS-PRAL 189 Query: 242 MKL---------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290 +L + + P ++ F+N + T I K A +AG+ K S H +R Sbjct: 190 EELSYWFDDRNKMDIKPGEEDYVFLNRRGHHLTRTMILIMIKRYAVEAGIKKTISPHTLR 249 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYT 323 AT + GA + A G +++ E YT Sbjct: 250 HSFATSLLEGGADLRAIQAMLGHESIGTTEIYT 282 >gi|94986683|ref|YP_594616.1| site-specific recombinase [Lawsonia intracellularis PHE/MN1-00] gi|94730932|emb|CAJ54295.1| site-specific recombinase [Lawsonia intracellularis PHE/MN1-00] Length = 306 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 58/218 (26%), Positives = 86/218 (39%), Gaps = 32/218 (14%) Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPK---------RKTEGIRPWTKEDMQQFKSFWS 187 L+S+R F W V ++ + NP L ++ PK + E +R T D+ Sbjct: 78 LSSIRNFFHWCVEEDILLSNPALLIDGPKLPSLLPNILSQDEMLRLLTTPDITN-----K 132 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLL- 245 G + ++ E L SG+R S+ V + IK K G + L MKLL Sbjct: 133 LGFRDKVILELLYASGIRVSELIGVHVLDFDQDKGIIKVFGKGGKERYIPLHSSAMKLLI 192 Query: 246 --------AMTPIGKETFFINNDKQKMNATQFSIW--FKAKATKAGVNKSA--HGVRKFS 293 TPI K F ++ T+ +IW K A A +NKS H R Sbjct: 193 HYVQKIRPMFTPIEKFLFL---NRSGKGLTRQAIWKIIKRYALLASINKSISPHTFRHTF 249 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTK-GADRIR 330 AT + GA + G + E YT +DR++ Sbjct: 250 ATHLLEGGADLRSVQLLLGHVDMSATELYTHVQSDRLK 287 >gi|220925261|ref|YP_002500563.1| integrase family protein [Methylobacterium nodulans ORS 2060] gi|219949868|gb|ACL60260.1| integrase family protein [Methylobacterium nodulans ORS 2060] Length = 588 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 75/345 (21%), Positives = 130/345 (37%), Gaps = 79/345 (22%) Query: 54 STPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG-DFDYR 112 T +R + +SP++ TL LISE+ K G+ + + F + G D + + Sbjct: 225 DTARRSHDSSPKR---TLNALISEFEKDPGRGARTGKTNTDYRMVFTAMREIIGPDTEVQ 281 Query: 113 KITTKH------------------------IRSG-VESRKHTPSSAIQ----FLTSMRVL 143 I+ +H +++G + R + IQ LT M + Sbjct: 282 SISREHTKRVRDLFLALPPNATKRFPGMTLLQAGELAQRNRLATLNIQTINSHLTKMSTM 341 Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE--------------- 188 F WA+++E++ NP + + + P+ D++Q ++ +S Sbjct: 342 FNWAIKEEWIGRNPASGLAIDEVQKNKREPF---DLEQLRAIFSAPIYAGCQDDEAGYAK 398 Query: 189 --GSQPRLAFEFL----LYSGLRCSDSCRAGVQHL--QNNIFSIKTQ----------KTG 230 GS PR A ++ L+ GLR +++C+ V+ L +N I + + K G Sbjct: 399 PGGSHPRRARFWVPLLSLFHGLRLNEACQLRVEDLAERNGITVLHVRAADADQRIKSKAG 458 Query: 231 TIITVELPD----GFMKLLAMTPI-GKETFF--INNDKQKMNATQFSIWFKAKATKAGVN 283 T I P+ GF+ + P+ G F + D + + F WF G Sbjct: 459 TRIVPLHPEVIKIGFVDYVRDLPVEGDGRIFPELQKDTRGYYSDAFQKWFSRFLHSCGAA 518 Query: 284 KSA---HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 K+ H R A +AG A GW + Y KG Sbjct: 519 KTGTKFHSFRHGWADRLREAGVPEDRRRALGGWASTGADAGYGKG 563 >gi|170723312|ref|YP_001751000.1| site-specific tyrosine recombinase XerD [Pseudomonas putida W619] gi|169761315|gb|ACA74631.1| tyrosine recombinase XerD [Pseudomonas putida W619] Length = 298 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 57/266 (21%), Positives = 113/266 (42%), Gaps = 28/266 (10%) Query: 86 SLAVNSRISFES---YFDQIIRKSG---DFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139 L+ N+R+S+ S F+ ++ G R++ H+ ++ + + P S +FL+ Sbjct: 21 GLSDNTRVSYRSDLALFNGWLQDHGLALPAAGRELILDHLAWRLD-QGYKPRSTARFLSG 79 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQFKSFWSEGSQPRLA 195 +R F++ +R++ +A++P L +E P+ + ++ D +Q + G + R Sbjct: 80 LRGFFRYLLREKLIAVDPTLQIEMPQLGKPLPKSLSEADVDALLQAPDLGEAIGQRDRAM 139 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-----------IITVE--LPDGFM 242 E L GLR ++ + + ++ G+ ++ +E L DG + Sbjct: 140 LEVLYACGLRVTELVSLALDQVNLRQGVLRVMGKGSKERLVPMGEEAVLWLERYLRDGRV 199 Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300 +LL P + F + ++M F K A AG++K S H +R AT + Sbjct: 200 ELLNGRP--SDVLFPSLRGEQMTRQTFWHRIKHHARIAGIDKPLSPHTLRHAFATHLLNH 257 Query: 301 GATAHELMATYGWKTVDQAETYTKGA 326 GA + G + + YT A Sbjct: 258 GADLRVVQMLLGHSDLSTTQIYTHVA 283 >gi|322381748|ref|ZP_08055702.1| site-specific tyrosine recombinase XerD-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321154136|gb|EFX46458.1| site-specific tyrosine recombinase XerD-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 298 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 49/213 (23%), Positives = 92/213 (43%), Gaps = 20/213 (9%) Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF----KSF 185 P++ + L S+R L+ + +R++ + ++P VE PK +T+ T E+M + Sbjct: 67 PATISRTLVSIRALYHYLIREQVMTLDPSGQVESPKAETKIPVILTVEEMDNLLGVPNTG 126 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245 S G + + E L +G+R S+ + ++ ++ TG + +P G + L Sbjct: 127 TSSGLRDKAMLELLYATGIRVSELITLNKGDIYADLGYVRCTGTGGKERI-VPMGKVATL 185 Query: 246 -----------AMTPIGK--ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290 A+ GK + F+N+ +M F K AT+AG++K + H +R Sbjct: 186 WIQRYLNEAREALLKEGKPDKALFLNHIGTRMTRQGFWKMMKKYATEAGIHKEITPHTLR 245 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYT 323 AT + GA + G + + YT Sbjct: 246 HSFATHLLENGADLRAVQELLGHSDLSTTQRYT 278 >gi|312200707|ref|YP_004020768.1| integrase family protein [Frankia sp. EuI1c] gi|311232043|gb|ADP84898.1| integrase family protein [Frankia sp. EuI1c] Length = 500 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 32/138 (23%), Positives = 58/138 (42%), Gaps = 18/138 (13%) Query: 96 ESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAI 155 +++ D +IR+ D + RK P + + ++R AV ++ Sbjct: 133 KAHIDALIRRLEDSN-----------ATRRRKIGPKTIAEIFGTLRAALNDAVDNRLISF 181 Query: 156 NPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA--FEFLLYSGLRCSDSCRAG 213 NPC VE P+ + PW + ++ F E + RL+ FE + GLR ++C Sbjct: 182 NPCNGVELPENDRAEVEPW---EAKEIGRFLDEAAGDRLSALFELIALHGLRRGEACGGT 238 Query: 214 VQHL--QNNIFSIKTQKT 229 L + + +I+ Q T Sbjct: 239 WDGLDGETGVLTIRQQIT 256 >gi|26988201|ref|NP_743626.1| site-specific tyrosine recombinase XerD [Pseudomonas putida KT2440] gi|148549459|ref|YP_001269561.1| site-specific tyrosine recombinase XerD [Pseudomonas putida F1] gi|34222835|sp|Q88MV0|XERD_PSEPK RecName: Full=Tyrosine recombinase xerD gi|24982938|gb|AAN67090.1|AE016337_13 integrase/recombinase XerD [Pseudomonas putida KT2440] gi|148513517|gb|ABQ80377.1| tyrosine recombinase XerD subunit [Pseudomonas putida F1] Length = 298 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 52/216 (24%), Positives = 87/216 (40%), Gaps = 21/216 (9%) Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---- 185 P S +FL+ +R F++ +R++ VAI+P L V+ P+ + ++ D++ Sbjct: 70 PRSTARFLSGLRGFFRYLLREKLVAIDPTLQVDMPQLGKPLPKSLSEADVEALLQAPDLG 129 Query: 186 WSEGSQPRLAFEFLLYSGLRCSD---------SCRAGVQHLQNNIFSIKTQKTGTIITVE 236 + G + R E L GLR ++ + R GV + + G V Sbjct: 130 EAIGQRDRAMLEVLYACGLRVTELVSLTLDQVNLRQGVLRVMGKGSKERLVPMGEEAVVW 189 Query: 237 LP----DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290 L DG +LL P + F + ++M F K A AG++K S H +R Sbjct: 190 LERYQRDGRAELLNGRP--SDVLFPSQRGEQMTRQTFWHRIKHHARVAGIDKPLSPHTLR 247 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 AT + GA + G + + YT A Sbjct: 248 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA 283 >gi|254478334|ref|ZP_05091713.1| site-specific recombinase, phage integrase family [Carboxydibrachium pacificum DSM 12653] gi|214035692|gb|EEB76387.1| site-specific recombinase, phage integrase family [Carboxydibrachium pacificum DSM 12653] Length = 373 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 43/167 (25%), Positives = 74/167 (44%), Gaps = 8/167 (4%) Query: 48 MSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKS 106 ++ + K E+I + TL+ I+E+ K A + +S +S D II Sbjct: 44 LAEIIAKIEKNEFIEPSK---ITLQQFINEWLKIYGEPKWAPKTLVSNKSLIDNYIIPNL 100 Query: 107 GDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVL---FKWAVRQEYVAINPCLSVER 163 G + +K+ I+ S K S R+L K+AV+ +Y+A NPC VE Sbjct: 101 GHIELQKLKPVEIQKFYNSLKEKQLSNTTINYVHRLLNQVLKFAVKWQYIAKNPCELVEA 160 Query: 164 PKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSC 210 PK+ + W E +++ K + + + + LY+GLR + C Sbjct: 161 PKKDKKEFVTWNFEHVKKAKKIFKD-TPIYIHVMIALYTGLRLGEIC 206 >gi|313500307|gb|ADR61673.1| XerD [Pseudomonas putida BIRD-1] Length = 298 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 52/216 (24%), Positives = 87/216 (40%), Gaps = 21/216 (9%) Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---- 185 P S +FL+ +R F++ +R++ VAI+P L V+ P+ + ++ D++ Sbjct: 70 PRSTARFLSGLRGFFRYLLREKLVAIDPTLQVDMPQLGKPLPKSLSEADVEALLQAPDLG 129 Query: 186 WSEGSQPRLAFEFLLYSGLRCSD---------SCRAGVQHLQNNIFSIKTQKTGTIITVE 236 + G + R E L GLR ++ + R GV + + G V Sbjct: 130 EAIGQRDRAMLEVLYACGLRVTELVSLTLDQVNLRQGVLRVMGKGSKERLVPMGEEAVVW 189 Query: 237 LP----DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290 L DG +LL P + F + ++M F K A AG++K S H +R Sbjct: 190 LDRYQRDGRAELLNGRP--SDVLFPSQRGEQMTRQTFWHRIKHHARVAGIDKPLSPHTLR 247 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 AT + GA + G + + YT A Sbjct: 248 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA 283 >gi|330999644|ref|ZP_08323353.1| site-specific recombinase, phage integrase family [Parasutterella excrementihominis YIT 11859] gi|329574150|gb|EGG55726.1| site-specific recombinase, phage integrase family [Parasutterella excrementihominis YIT 11859] Length = 358 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 28/113 (24%), Positives = 55/113 (48%), Gaps = 9/113 (7%) Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF--KSFW 186 +PS+ + LT + +F++A++ E +NPC VE+P+ R + ED+++ S W Sbjct: 124 SPSTVNRELTILSDVFQFAIKNELTDVNPCRGVEKPREPEHRERVASDEDIEKLLQASGW 183 Query: 187 SEGSQPR-------LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232 + P+ AF F +G+R + + L +N+ + + T T+ Sbjct: 184 DGHTVPKNKMQLAVAAFLFSCQTGMRAGELLKIEYSWLGDNVLHVPAEATKTL 236 >gi|167036461|ref|YP_001664039.1| phage integrase family protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320114886|ref|YP_004185045.1| integrase family protein [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166855295|gb|ABY93703.1| phage integrase family protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319927977|gb|ADV78662.1| integrase family protein [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 373 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 43/167 (25%), Positives = 74/167 (44%), Gaps = 8/167 (4%) Query: 48 MSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKS 106 ++ + K E+I + TL+ I+E+ K A + +S +S D II Sbjct: 44 LAEIIAKIEKNEFIEPSK---ITLQQFINEWLKIYGEPKWAPKTLVSNKSLIDNYIIPNL 100 Query: 107 GDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVL---FKWAVRQEYVAINPCLSVER 163 G + +K+ I+ S K S R+L K+AV+ +Y+A NPC VE Sbjct: 101 GHIELQKLKPVEIQKFYNSLKEKQLSNTTINYVHRLLNQVLKFAVKWQYIAKNPCELVEA 160 Query: 164 PKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSC 210 PK+ + W E +++ K + + + + LY+GLR + C Sbjct: 161 PKKDKKEFVTWNFEHVKKAKKIFKD-TPIYIHVMIALYTGLRLGEIC 206 >gi|330969023|gb|EGH69089.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv. aceris str. M302273PT] Length = 298 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 59/245 (24%), Positives = 105/245 (42%), Gaps = 23/245 (9%) Query: 112 RKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171 R++ H+ VE+ + P S +FL+ R +++ +R++ +A++P L ++ P+ Sbjct: 53 REVILDHLAWRVEN-AYKPRSTARFLSGARGFYRYLLREKLIAVDPTLQIDMPQLGKPLP 111 Query: 172 RPWTKEDMQQFKSF--WSE--GSQPRLAFEFLLYSGLRCSD---------SCRAGVQHLQ 218 + ++ D++ + SE G + R E L GLR ++ + R GV + Sbjct: 112 KSLSEADVEALLAAPDLSEPIGERDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVM 171 Query: 219 NNIFSIKTQKTG--TIITVE--LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFK 274 + G +I+ VE L +LL P + F + +M F K Sbjct: 172 GKGSKERLVPMGEESIVWVERYLRGARDELLGGKP--SDVLFPSTRGDQMTRQTFWHRIK 229 Query: 275 AKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 +AT AG+ KS H +R AT + GA + G + + YT A R RL Sbjct: 230 HQATVAGIGKSLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-RARLQ 288 Query: 333 IKNSR 337 ++R Sbjct: 289 EMHAR 293 >gi|302382463|ref|YP_003818286.1| integrase [Brevundimonas subvibrioides ATCC 15264] gi|302193091|gb|ADL00663.1| integrase family protein [Brevundimonas subvibrioides ATCC 15264] Length = 402 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 84/376 (22%), Positives = 141/376 (37%), Gaps = 45/376 (11%) Query: 9 PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPK-REYINSPRKK 67 PFV + R +G + YFR+G R L P S + A + A+ K + I P Sbjct: 16 PFVQRVRKPNGDVHLYFRRGAFREGPLKSPDGSPELKAEIDAILERVRKASDAIARP--A 73 Query: 68 PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK---HIRSGVE 124 T+ ++ Y KSA + SLA ++ ++ Y D++I +GD ++T +R Sbjct: 74 AGTVGGMLKAYNKSAEFLSLARITQRGYQDYIDELIADTGDLLLSEVTRSWVIGMRDAWA 133 Query: 125 SRKHTPSSA-IQFLTSMRVLFKWAVRQEYVAINP---CLSVERPKRKTEGIRPWTKEDMQ 180 R H ++ +Q L + + + + +P V RP E W +++ Sbjct: 134 LRGHNAANKRMQVLKNALMPAIEDDTDQRIQGDPFHKVRKVRRPHDAGEAHPAWELAEVE 193 Query: 181 QFKSFWSEGSQPRLAFEFLL--YSGLR----------CSDSCRAGVQHLQNNIFSIKTQK 228 QP LA L Y G R R G + + I +++ Sbjct: 194 IAIEEAIRRDQPGLARAIALGRYGGFRRGTIVSIPLNARTLGRDGRGEPETRLVWITSKR 253 Query: 229 TGTIITVELPDG-FMKLLAMTPIGKETFFINNDKQKMNATQFS---------------IW 272 +++ + D ++A TP T N + QF I Sbjct: 254 --QVLSDKREDARLAAVIARTPNRALTIAYNKRGDPFSVRQFDQALERLLDRLAADGKIR 311 Query: 273 FKAKATKAGVNK-----SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 K T G + + HG+R A+AGA+ E+MA + A+ Y + A Sbjct: 312 ATIKRTSDGRDVVVCPLTIHGLRHARGVELAEAGASDAEIMAQLEHASDAAAKIYRRQAQ 371 Query: 328 RIRLGIKNSRRISSVV 343 R ++ RI +VV Sbjct: 372 RRKMADAGQDRIDNVV 387 >gi|168703879|ref|ZP_02736156.1| integrase/recombinase [Gemmata obscuriglobus UQM 2246] Length = 301 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 53/231 (22%), Positives = 94/231 (40%), Gaps = 23/231 (9%) Query: 115 TTKHIRSGV---ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171 TT+ +RS V + + S+ + L ++R K+ R + +NP L++ PK+ + Sbjct: 54 TTRTVRSFVSWLHEQGYAKSTIARRLAAVRSFSKYLCRAGVLDVNPALALRGPKQDKKLP 113 Query: 172 RPWTKEDMQQF-----KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSI 224 T D+Q+ + W+ G + R E L SG+R S+ + L + + ++ Sbjct: 114 HFLTLADVQKLLTAPPATDWA-GRRDRAVLETLYASGIRVSELVGLDLLAVDLNDGVITV 172 Query: 225 KTQKTGTIITVELPDGFM----------KLLAMTPIGKETFFINNDKQKMNATQFSIWFK 274 + + + + PD LLA T E F+NN ++ Sbjct: 173 RGKGKKERLALLGPDAVKAITLWYEDRSALLARTGQETEAVFLNNKGGRLTTRSVGRLLS 232 Query: 275 AKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 AG++ S H +R AT DAGA + G K++ + YT Sbjct: 233 HHLKVAGLDPRTSPHTLRHSFATHMLDAGADIRGVQELLGHKSLATTQVYT 283 >gi|302187933|ref|ZP_07264606.1| site-specific recombinase, phage integrase family protein [Pseudomonas syringae pv. syringae 642] Length = 328 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 49/229 (21%), Positives = 98/229 (42%), Gaps = 12/229 (5%) Query: 87 LAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKW 146 L+VN+ +E+ ++ +F+ R++ +H+ + TP+ A + ++ +R++F + Sbjct: 70 LSVNTIKQYEAASVRLKTYLEEFEPRQVLPRHVAALKLHMSDTPNMANRVISFLRMVFAY 129 Query: 147 AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ-PRLAFEFLLYSGLR 205 A+ ++ V NPC + +R E R D +F + + S+ + +E +G R Sbjct: 130 ALERQIVDSNPCTGI---RRHAEKKRDRYISD-AEFAAICAASSEYMSVIWEMCFLTGQR 185 Query: 206 CSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPI------GKETFFINN 259 SD + + + + + QKTG + V + LL G F + Sbjct: 186 ISDVLNIKLSDISDIGIAFEQQKTGAKLIVGMSQDLKALLDRVHALPRKIRGATLFCARS 245 Query: 260 DKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHEL 307 + ++ + F+A AGV + H +R S T + G A L Sbjct: 246 GGKPVSYDTCKMSFRAACKAAGVIGATIHDLRAKSLTDTDRQGNNAQML 294 >gi|227879087|ref|ZP_03996976.1| integrase-recombinase [Lactobacillus crispatus JV-V01] gi|256843076|ref|ZP_05548564.1| tyrosine recombinase XerD [Lactobacillus crispatus 125-2-CHN] gi|256850272|ref|ZP_05555701.1| integrase/recombinase [Lactobacillus crispatus MV-1A-US] gi|262046336|ref|ZP_06019298.1| tyrosine recombinase XerD [Lactobacillus crispatus MV-3A-US] gi|293379759|ref|ZP_06625891.1| tyrosine recombinase XerD [Lactobacillus crispatus 214-1] gi|312977261|ref|ZP_07789009.1| tyrosine recombinase XerD [Lactobacillus crispatus CTV-05] gi|227861328|gb|EEJ68958.1| integrase-recombinase [Lactobacillus crispatus JV-V01] gi|256614496|gb|EEU19697.1| tyrosine recombinase XerD [Lactobacillus crispatus 125-2-CHN] gi|256712909|gb|EEU27901.1| integrase/recombinase [Lactobacillus crispatus MV-1A-US] gi|260573207|gb|EEX29765.1| tyrosine recombinase XerD [Lactobacillus crispatus MV-3A-US] gi|290923668|gb|EFE00539.1| tyrosine recombinase XerD [Lactobacillus crispatus 214-1] gi|310895692|gb|EFQ44758.1| tyrosine recombinase XerD [Lactobacillus crispatus CTV-05] Length = 301 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 51/224 (22%), Positives = 95/224 (42%), Gaps = 23/224 (10%) Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----QQFKSFW 186 SS + ++SMR ++W RQ +NP L ++ PK++ ++ +M +Q + Sbjct: 72 SSISRLISSMRKFYQWLARQNIQKLNPMLEIDLPKKERRLPTALSQAEMNRLLEQPNTKR 131 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT------IITVELP-- 238 G + R E L +G+R S+ +Q L +++ ++ G I V L Sbjct: 132 KLGIRDRAILETLYATGMRVSELINLELQDLHDDLGLVRVLGKGEKERLIPISPVALDWI 191 Query: 239 ---DGFMKLLAMTPIGK--ETFFINNDKQKMNATQFSIW--FKAKATKAGVNKSA--HGV 289 + ++ + +GK E F+NN +K+ T+ +IW K A + K H + Sbjct: 192 KKYENEVRDPLILQVGKSDEHIFLNNRGKKI--TRQAIWQMIKKYCQMAAITKDVTPHTL 249 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 R AT + GA + G + + YT + + L + Sbjct: 250 RHTFATHLLENGADLRVVQEILGHSDISTTQIYTNLSQKQILNV 293 >gi|78042632|ref|YP_360783.1| tyrosine recombinase XerD [Carboxydothermus hydrogenoformans Z-2901] gi|77994747|gb|ABB13646.1| tyrosine recombinase XerD [Carboxydothermus hydrogenoformans Z-2901] Length = 287 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 54/227 (23%), Positives = 93/227 (40%), Gaps = 20/227 (8%) Query: 115 TTKHIRSGVE--SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172 T+K I+ ++ +RK P+S + L ++R +K+ +R++ V NP L V+ PK + Sbjct: 45 TSKDIKLYLQDLARKLKPASVARNLAAIRSFYKYLLREKIVGENPALDVDGPKLGLKLPE 104 Query: 173 PWTKEDMQQF-----KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ 227 + E++ S W EG + R E L +GLR S+ + +L + +K Sbjct: 105 ILSYEEIDLLLKAPDLSTW-EGVRDRAMLELLYATGLRVSELVNLELPNLYLDERYVKIL 163 Query: 228 KTGTIITVELPDG---------FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKAT 278 G + + +P G ++ L A FI F K Sbjct: 164 GKGAKMRI-VPFGEVAAHYLNQYLALRAKRKSNSLKLFITRKGSGFTRQGFWKMLKRYGQ 222 Query: 279 KAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 KAG+ N + H +R AT + GA + G ++ + YT Sbjct: 223 KAGIVKNLTPHLIRHSFATHLLENGADLRIVQELLGHSFIETTQIYT 269 >gi|51596111|ref|YP_070302.1| integrase [Yersinia pseudotuberculosis IP 32953] gi|51589393|emb|CAH21015.1| putative integrase [Yersinia pseudotuberculosis IP 32953] Length = 340 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 56/226 (24%), Positives = 93/226 (41%), Gaps = 18/226 (7%) Query: 7 LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66 +PP R R GK Y FR GR IRL E + +++ E + +K Sbjct: 13 MPP-----RVRKGKSAYEFRAIDGRTIRL-CNFECSQADVWVAF--------EKLMINQK 58 Query: 67 KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126 + +T LI+E+ S + LA ++ + Y +II G I +HIR ++ R Sbjct: 59 EDSTFTGLINEFLLSGDFCELASETQKDYHKYSSKIIAVFGKMSPDNIRPEHIRKYMDKR 118 Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + A + + M +F+W + V +NPC V++ K K +R D + + Sbjct: 119 GAKSRVQANREKSFMSRVFRWGYERGKVKLNPCQGVKQFKEK---VRTRYITDEEYTALY 175 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231 + S ++A E R +D L + I+ KTG Sbjct: 176 DTAPSVVKVAMELAYLCCTRQADILDMKKGQLLESGILIQQSKTGV 221 >gi|317504379|ref|ZP_07962363.1| integrase/recombinase XerD [Prevotella salivae DSM 15606] gi|315664501|gb|EFV04184.1| integrase/recombinase XerD [Prevotella salivae DSM 15606] Length = 307 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 51/229 (22%), Positives = 82/229 (35%), Gaps = 53/229 (23%) Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS-- 187 P S + L+ +R F++ + Y+ +P +E P + E++ + + Sbjct: 73 PRSQSRILSGIRSFFRFLLLDGYIDNDPTELLESPVLGQHLPEVLSTEEVDRLEESIDLS 132 Query: 188 --EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245 EG + R E L GLR S+ + L L DGF+++L Sbjct: 133 KPEGQRNRTIIEVLFSCGLRVSELVHLKLSELY------------------LDDGFIRVL 174 Query: 246 A------MTPI----------------------GKETF-FINNDKQKMNATQFSIWFKAK 276 + PI G+E F F+N + T I K + Sbjct: 175 GKGSKERLVPISPRAIKELRLWFADRVHLDIKPGEEDFVFLNRRGHHLTRTMILIMIKRQ 234 Query: 277 ATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 A +AG+ K S H +R AT GA + A G + + E YT Sbjct: 235 AEEAGIKKTISPHTLRHSFATALLQGGADLRAIQAMLGHEHIGTTEIYT 283 >gi|303236823|ref|ZP_07323402.1| tyrosine recombinase XerD [Prevotella disiens FB035-09AN] gi|302482991|gb|EFL46007.1| tyrosine recombinase XerD [Prevotella disiens FB035-09AN] Length = 318 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 51/210 (24%), Positives = 89/210 (42%), Gaps = 19/210 (9%) Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK-----SFW 186 S + L+ +R F++ V + Y+ +P +E PK+ + E++ + S W Sbjct: 85 SLARILSGVRQFFRYLVLEGYIEADPTELLESPKQPQHLPEVLSTEEVDSLENAIDLSKW 144 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT---IITV------EL 237 EG + + E L GLR S+ + +L + ++ G+ ++ + EL Sbjct: 145 -EGHRNKAIIEVLFSCGLRVSELTNLKLSNLYADEQFVRVMGKGSKERLVPISPRALKEL 203 Query: 238 PDGFMKLLAM-TPIGKETF-FINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFS 293 F+ M G+E F F+N + T I K A +AG+ K S H +R Sbjct: 204 NFWFIDRNQMKIKEGEEDFVFLNRRGAHLTRTMILIMIKKYAQEAGIKKTISPHTLRHSF 263 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYT 323 AT + GA + A G +++ E YT Sbjct: 264 ATALLEGGADLRAIQAMLGHESIGTTEIYT 293 >gi|302185529|ref|ZP_07262202.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv. syringae 642] Length = 298 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 58/245 (23%), Positives = 106/245 (43%), Gaps = 23/245 (9%) Query: 112 RKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171 R++ H+ VE+ + P S +FL+ R +++ +R++ ++++P L ++ P+ Sbjct: 53 REVILDHLAWRVEN-AYKPRSTARFLSGARGFYRYLLREKLISVDPTLQIDMPQLGKPLP 111 Query: 172 RPWTKEDMQQFKSF--WSE--GSQPRLAFEFLLYSGLRCSD---------SCRAGVQHLQ 218 + ++ D++ + SE G + R E L GLR ++ + R GV + Sbjct: 112 KSLSEADVEALLAAPDLSEPIGERDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVM 171 Query: 219 NNIFSIKTQKTG--TIITVE--LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFK 274 + G +I+ VE L +LL P + F + ++M F K Sbjct: 172 GKGSKERLVPMGEESIVWVERYLRGARDELLGGKP--SDVLFPSTRGEQMTRQTFWHRIK 229 Query: 275 AKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 +AT AG+ KS H +R AT + GA + G + + YT A R RL Sbjct: 230 HQATVAGIGKSLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-RARLQ 288 Query: 333 IKNSR 337 ++R Sbjct: 289 EMHAR 293 >gi|220904455|ref|YP_002479767.1| tyrosine recombinase XerD [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219868754|gb|ACL49089.1| tyrosine recombinase XerD [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 310 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 54/227 (23%), Positives = 95/227 (41%), Gaps = 22/227 (9%) Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 + +R++T + + L+++R F +AV++ + NP ++ PK ++++M+ Sbjct: 75 LRARQNTGRTLARRLSALRAFFDFAVQENAIKNNPAQLLDNPKLPQHLPEVLSRDEMESL 134 Query: 183 KS---FWSEGSQ-PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII-TVEL 237 + G Q R E L +GLR S+ C + L ++ G V L Sbjct: 135 LARPDLRDRGGQRDRCILELLYAAGLRVSELCDLCLPDLDLQRGLVRVFGKGAKERLVPL 194 Query: 238 PDGFMKLL---------AMTPIGKETFFINNDKQKMNATQFSIW--FKAKATKAGVNK-- 284 D +L A +P G + F+N + + T+ IW K A +AG+ + Sbjct: 195 HDLMQNMLENYIRDWRPAFSPTGNQ-LFVNRSGRAL--TRQYIWKMVKKYALEAGIRRPV 251 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIR 330 S H R AT + GA + G + E YT A+R+R Sbjct: 252 SPHTFRHSFATHLLEGGADLRAVQLLLGHADISATEIYTHVQAERLR 298 >gi|48477921|ref|YP_023627.1| DNA integration/recombination/invertion protein [Picrophilus torridus DSM 9790] gi|48430569|gb|AAT43434.1| DNA integration/recombination/invertion protein [Picrophilus torridus DSM 9790] Length = 276 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 40/151 (26%), Positives = 65/151 (43%), Gaps = 10/151 (6%) Query: 187 SEGSQPRLAF-EFLLYSGLRCSDSCRAGVQH--LQNNIFSIKTQKTGTIITVELPDGFMK 243 S ++ LA LLYSG+R S+ C ++ L NI +++ K G +PD + Sbjct: 112 SSNNRKHLAIVSLLLYSGIRVSELCNLKIEDIDLNENIIYVRSGKGGKDRIAIIPDECSE 171 Query: 244 LLAMTPIGK-----ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATI 296 +L + +TFFI+N K + + + K A +AG+ K + H +R AT Sbjct: 172 ILRSYYNDRLKYPGDTFFISNKKSRYDTSTIERLIKKLAVRAGIEKHVTPHVLRHTFATS 231 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGAD 327 G + G +V + YT D Sbjct: 232 VLRNGGDIRFIQQILGHASVATTQIYTHIDD 262 >gi|301299326|ref|ZP_07205611.1| tyrosine recombinase XerD [Lactobacillus salivarius ACS-116-V-Col5a] gi|300853066|gb|EFK80665.1| tyrosine recombinase XerD [Lactobacillus salivarius ACS-116-V-Col5a] Length = 290 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 53/254 (20%), Positives = 116/254 (45%), Gaps = 28/254 (11%) Query: 99 FDQIIRKSGDFDYRKITTKHIRSGVESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAI 155 F + +R++ ++++ + I + ++S K+ SS ++ ++S+R F++ +++ + Sbjct: 28 FLEYLRENEIPSFKQVNKEVIVNYMQSEKNNNKANSSILRSVSSLRKFFQYLAQEKIIEK 87 Query: 156 NPCLSVERPKRKTEGIRPWTKEDMQQF----KSFWSEGSQPRLAFEFLLYSGLRCSDSCR 211 +P L ++ PK+K + TKE++++ + G + R E + +GLR S+ Sbjct: 88 DPMLLIDTPKKKQHLPQVLTKEEVEKLLRSPNTGQVLGLRDRAMLELMYATGLRISEIIN 147 Query: 212 AGVQHLQNNIFSIKTQKTG---TIITVE----------LPDGFMKLLAMTPIGKETFFIN 258 ++ L + +++T G I+ V L + KLL K + ++ Sbjct: 148 LKLEDLHLTMGTLQTLGKGHKERIVPVGDEAIKWVNRYLEEARPKLLKQ----KRSNYLF 203 Query: 259 NDKQKMNATQFSIW--FKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWK 314 + N T+ +W KA+ KAG+ K+ H +R AT + GA + G Sbjct: 204 LNFHGNNLTRQGVWKNLKAEVRKAGIQKNITPHTLRHSFATHILENGADLRIVQELLGHA 263 Query: 315 TVDQAETYTKGADR 328 + + YT +++ Sbjct: 264 DISTTQIYTHLSNK 277 >gi|23505472|ref|NP_700401.1| Integrase protein [Salmonella phage ST64B] gi|167995270|ref|ZP_02576360.1| integrase protein [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|207857414|ref|YP_002244065.1| phage integrase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|23379219|gb|AAL25906.1| Sb28 [Salmonella phage ST64B] gi|205327035|gb|EDZ13799.1| integrase protein [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|206709217|emb|CAR33550.1| phage integrase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|261247218|emb|CBG25042.1| phage integrase [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267994049|gb|ACY88934.1| integrase protein [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301158562|emb|CBW18073.1| bacteriophage integrase [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|323130323|gb|ADX17753.1| Integrase protein [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|326623804|gb|EGE30149.1| Integrase protein [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 329 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 46/171 (26%), Positives = 84/171 (49%), Gaps = 10/171 (5%) Query: 65 RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124 RK T L ++ SA + LA ++ + ++ I+ GD + + I +HIR ++ Sbjct: 55 RKNRITFTQLWRKFLASADYADLAPRTQKDYLAHEKYILAVFGDAEAKAIKPEHIRRYMD 114 Query: 125 SR-KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER-PKRKTEGIRPWTKEDMQQF 182 +R + + A +SM +F+W+ ++ YV NPC+ V++ PK + + R T E ++ Sbjct: 115 ARGQKSRVQANHEHSSMSRVFRWSYQRGYVPGNPCVGVDKFPKPQRD--RYITDE---EY 169 Query: 183 KSFWSEGSQP-RLAFEFLLYSGLRCSDSCRAG-VQHLQNNIFSIKTQKTGT 231 ++ ++ + R A E R SD + Q L+ IF I+ KTG Sbjct: 170 RAIYNNATPAVRAAMEIAYLCAARVSDVLKMNWNQILEKGIF-IQQGKTGV 219 >gi|330895934|gb|EGH28218.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv. japonica str. M301072PT] Length = 298 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 58/245 (23%), Positives = 106/245 (43%), Gaps = 23/245 (9%) Query: 112 RKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171 R++ H+ VE+ + P S +FL+ +R +++ +R++ ++++P L ++ P+ Sbjct: 53 REVILDHLAWRVEN-AYKPRSTARFLSGVRGFYRYLLREKLISVDPTLQIDMPQLGKPLP 111 Query: 172 RPWTKEDMQQFKSF--WSE--GSQPRLAFEFLLYSGLRCSD---------SCRAGVQHLQ 218 + ++ D++ + SE G + R E L GLR ++ + R GV + Sbjct: 112 KSLSEADVEALLAAPDLSEPIGERDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVM 171 Query: 219 NNIFSIKTQKTG--TIITVE--LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFK 274 + G +I+ VE L +LL P + F + +M F K Sbjct: 172 GKGSKERLVPMGEESIVWVERYLRGARDELLGGKP--SDVLFPSTRGDQMTRQTFWHRIK 229 Query: 275 AKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 +AT AG+ KS H +R AT + GA + G + + YT A R RL Sbjct: 230 HQATVAGIGKSLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-RARLQ 288 Query: 333 IKNSR 337 ++R Sbjct: 289 ELHAR 293 >gi|291286542|ref|YP_003503358.1| integrase family protein [Denitrovibrio acetiphilus DSM 12809] gi|290883702|gb|ADD67402.1| integrase family protein [Denitrovibrio acetiphilus DSM 12809] Length = 399 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 25/103 (24%), Positives = 52/103 (50%), Gaps = 3/103 (2%) Query: 109 FDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168 F +I HI+ + + + + + +L +F+ AVR + ++ NPC V++P+ +T Sbjct: 126 FKLSEIKPSHIQQYISNSELSAKTIANYLGVFHSIFESAVRDDLLSKNPCKHVKKPRVQT 185 Query: 169 EGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL--YSGLRCSDS 209 E + P++ E++ W P + F L Y+G+R ++ Sbjct: 186 EKVDPFSIEEVSMILD-WMRQHHPHMTIIFALGFYTGMRVGEA 227 >gi|90961911|ref|YP_535827.1| integrase/recombinase XerD/RipX family [Lactobacillus salivarius UCC118] gi|90821105|gb|ABD99744.1| Integrase/recombinase, XerD/RipX family [Lactobacillus salivarius UCC118] Length = 297 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 53/254 (20%), Positives = 116/254 (45%), Gaps = 28/254 (11%) Query: 99 FDQIIRKSGDFDYRKITTKHIRSGVESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAI 155 F + +R++ ++++ + I + ++S K+ SS ++ ++S+R F++ +++ + Sbjct: 35 FLEYLRENEIPSFKQVNKEVIVNYMQSEKNNNKANSSILRSVSSLRKFFQYLAQEKIIEK 94 Query: 156 NPCLSVERPKRKTEGIRPWTKEDMQQF----KSFWSEGSQPRLAFEFLLYSGLRCSDSCR 211 +P L ++ PK+K + TKE++++ + G + R E + +GLR S+ Sbjct: 95 DPMLLIDTPKKKQHLPQVLTKEEVEKLLRSPNTGQVLGLRDRAMLELMYATGLRISEIIN 154 Query: 212 AGVQHLQNNIFSIKTQKTGT---IITVE----------LPDGFMKLLAMTPIGKETFFIN 258 ++ L + +++T G I+ V L + KLL K + ++ Sbjct: 155 LKLEDLHLTMGTLQTLGKGHKERIVPVGDEAIKWVNRYLEEARPKLLKQ----KRSNYLF 210 Query: 259 NDKQKMNATQFSIW--FKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWK 314 + N T+ +W KA+ KAG+ K+ H +R AT + GA + G Sbjct: 211 LNFHGNNLTRQGVWKNLKAEVRKAGIQKNITPHTLRHSFATHILENGADLRIVQELLGHA 270 Query: 315 TVDQAETYTKGADR 328 + + YT +++ Sbjct: 271 DISTTQIYTHLSNK 284 >gi|13476600|ref|NP_108170.1| integrase [Mesorhizobium loti MAFF303099] gi|14027362|dbj|BAB53631.1| integrase [Mesorhizobium loti MAFF303099] Length = 343 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 39/185 (21%), Positives = 74/185 (40%), Gaps = 3/185 (1%) Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 P A + L S+ +F +AV E + NPC +ER + W++E ++ F++ Sbjct: 128 NPRKADKLLFSLSKVFSYAVADELIDKNPCTGIERLYNGSRRESVWSQEQIKAFRA--GA 185 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT 248 + LAFE L++G R D + + K G + V + +L + Sbjct: 186 PAHLLLAFEMALHTGQRQGDLLSRSWKDYDGIYLQFRQSKGGKKLKVRVHSKLKAMLDVL 245 Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHEL 307 K +N+ K+ F + + T+ + + H +R T A G++ ++ Sbjct: 246 DKDKMRILLNSRKRPWTKDGFKTSWGKECTRLQIEGVTFHDLRGTFITERAREGSSVEDI 305 Query: 308 MATYG 312 G Sbjct: 306 AKISG 310 >gi|330936913|gb|EGH41038.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv. pisi str. 1704B] Length = 298 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 57/239 (23%), Positives = 103/239 (43%), Gaps = 23/239 (9%) Query: 112 RKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171 R++ H+ VE+ + P S +FL+ +R +++ +R++ ++++P L ++ P+ Sbjct: 53 REVILDHLAWRVEN-AYKPRSTARFLSGVRGFYRYLLREKLISVDPTLQIDMPQLGKPLP 111 Query: 172 RPWTKEDMQQFKSF--WSE--GSQPRLAFEFLLYSGLRCSD---------SCRAGVQHLQ 218 + ++ D++ + SE G + R E L GLR ++ + R GV + Sbjct: 112 KSLSEADVEALLAAPDLSEPIGERDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVM 171 Query: 219 NNIFSIKTQKTG--TIITVE--LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFK 274 + G +I+ VE L +LL P + F + +M F K Sbjct: 172 GKGSKERLVPMGEESIVWVERYLRGARDELLGGKP--SDVLFPSTRGDQMTRQTFWHRIK 229 Query: 275 AKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 +AT AG+ KS H +R AT + GA + G + + YT A R RL Sbjct: 230 HQATVAGIGKSLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-RARL 287 >gi|306845920|ref|ZP_07478487.1| integrase family protein [Brucella sp. BO1] gi|306273555|gb|EFM55400.1| integrase family protein [Brucella sp. BO1] Length = 305 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 47/206 (22%), Positives = 81/206 (39%), Gaps = 11/206 (5%) Query: 45 PAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR 104 PA+M T R+ + KP TL WL+SEY SA + L+VN++ +E I Sbjct: 8 PAFMHEYLRLTRDRKIAEA---KPKTLAWLVSEYLASADYQKLSVNTKRDYERMTGVISI 64 Query: 105 KSGDFDYRKITTKHIRSGV----ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160 K G + + + R + + TP SA +T + + WA +E + NP Sbjct: 65 KFGTLPVQALEARGARRLFMDWRDEMRATPRSADLHITVLARIMSWAKNREIIIRNPLEK 124 Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSEG-SQPRLAFEFLLYSGLRCSDSCRAGVQHLQN 219 + + W Q F +E + + L++ R D + Sbjct: 125 AGKLHKSNRKDIIWMP---SQLSKFLNEAPAHLSDVVKMALWTMQRKGDVLGMPTIAYSD 181 Query: 220 NIFSIKTQKTGTIITVELPDGFMKLL 245 ++ I KTG + ++ D + +L Sbjct: 182 DLLWITQGKTGARVRIKPADEILPIL 207 >gi|224025282|ref|ZP_03643648.1| hypothetical protein BACCOPRO_02021 [Bacteroides coprophilus DSM 18228] gi|224018518|gb|EEF76516.1| hypothetical protein BACCOPRO_02021 [Bacteroides coprophilus DSM 18228] Length = 314 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 53/217 (24%), Positives = 90/217 (41%), Gaps = 18/217 (8%) Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS---- 187 S + L+ +R +++ + ++Y+ +PC +E P+ T E++ + Sbjct: 74 SQARILSGVRAFYRFLLLEDYIQQDPCELLESPQTGRHLPDVLTVEEIDRLIGSIDRSSR 133 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT---IITV------ELP 238 EG + R E L GLR S+ C + L N IK + G+ ++ + EL Sbjct: 134 EGQRNRAILETLYSCGLRVSELCNLKLSDLYLNEGFIKVEGKGSKQRLVPISPKAISELN 193 Query: 239 DGF-MKLLAMTPIGKETF-FINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSA 294 + F + + G E F FI+ + ++ K A AG+ K S H R A Sbjct: 194 NYFPNRNAGLIKPGYEDFVFISRFGKNISRIMVFHIIKELAGMAGIKKTISPHTFRHSFA 253 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 T + GA + G +++ E YT DR RL Sbjct: 254 THLLEGGANLRAIQCMLGHESIGTTEIYTH-IDRNRL 289 >gi|300214635|gb|ADJ79051.1| Integrase/recombinase, XerD/RipX family [Lactobacillus salivarius CECT 5713] Length = 297 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 53/254 (20%), Positives = 116/254 (45%), Gaps = 28/254 (11%) Query: 99 FDQIIRKSGDFDYRKITTKHIRSGVESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAI 155 F + +R++ ++++ + I + ++S K+ SS ++ ++S+R F++ +++ + Sbjct: 35 FLEYLRENEIPSFKQVNKEVIVNYMQSEKNNNKANSSILRSVSSLRKFFQYLAQEKIIEK 94 Query: 156 NPCLSVERPKRKTEGIRPWTKEDMQQF----KSFWSEGSQPRLAFEFLLYSGLRCSDSCR 211 +P L ++ PK+K + TKE++++ + G + R E + +GLR S+ Sbjct: 95 DPMLLIDTPKKKQHLPQVLTKEEVEKLLRSPNTGQVLGLRDRAMLELMYATGLRISEIIN 154 Query: 212 AGVQHLQNNIFSIKTQKTG---TIITVE----------LPDGFMKLLAMTPIGKETFFIN 258 ++ L + +++T G I+ V L + KLL K + ++ Sbjct: 155 LKLEDLHLTMGTLQTLGKGHKERIVPVGDEAIKWVNRYLEEARPKLLKQ----KRSNYLF 210 Query: 259 NDKQKMNATQFSIW--FKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWK 314 + N T+ +W KA+ KAG+ K+ H +R AT + GA + G Sbjct: 211 LNFHGNNLTRQGVWKNLKAEVRKAGIQKNITPHTLRHSFATHILENGADLRIVQELLGHA 270 Query: 315 TVDQAETYTKGADR 328 + + YT +++ Sbjct: 271 DISTTQIYTHLSNK 284 >gi|134093808|ref|YP_001098883.1| putative phage integrase [Herminiimonas arsenicoxydans] gi|133737711|emb|CAL60756.1| putative phage integrase [Herminiimonas arsenicoxydans] Length = 418 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 49/201 (24%), Positives = 82/201 (40%), Gaps = 15/201 (7%) Query: 48 MSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG 107 + + G+ P E + + T++ LI++YRK + LA N+++++ +I Sbjct: 79 IGIIDGTNPADEVRKAKANRDWTMRELIADYRKLV-FSDLAKNTQLTYGRNLKRIENGMA 137 Query: 108 DFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP--- 164 + + + I + +E K S +R LFK A ++ + NPC ++ Sbjct: 138 AMSVQTVGPEDIIAQLERVKAGWSELFTLWMVLRGLFKHAAGKKIIFANPCAGIQLEAVI 197 Query: 165 -KRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF- 222 KR R ED S LA LL +G+R S+ A L+ N+F Sbjct: 198 GKRPAIRRRLMLSEDELTTVMNADMNSANLLAIHILLGTGVRSSELFTA----LKENVFL 253 Query: 223 -----SIKTQKTGTIITVELP 238 I KTG I + LP Sbjct: 254 DEGRWHIPASKTGPAIDIPLP 274 >gi|116513910|ref|YP_812816.1| integrase [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|116093225|gb|ABJ58378.1| tyrosine recombinase XerD subunit [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|325125576|gb|ADY84906.1| Integrase-recombinase [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 298 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 48/214 (22%), Positives = 93/214 (43%), Gaps = 24/214 (11%) Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQFKSFW 186 SS + ++++ ++W VRQ+ +A++P ++ PKR+ T+ + ++Q Sbjct: 70 SSISRLVSTLSRFYQWLVRQQLIALDPMSQIDAPKREKRMPLALTEAEVGKLLEQPDLTT 129 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT---IITVE------- 236 G + R+ E L +G+R S++ + + N+ IK G+ +I V Sbjct: 130 DLGIRDRVLLELLYATGMRVSEAVNLQLADVHANLQLIKVLGKGSKERLIPVSALALDWI 189 Query: 237 ---LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAK--ATKAGVNKSA--HGV 289 LP +LL GK + ++ + + T+ ++W K K +AG+ K H + Sbjct: 190 KRYLPVRDQQLLKR---GKSSDYLFLNSRGGQLTRQAVWQKIKKYCQQAGIAKDVTPHTL 246 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYT 323 R AT + GA + G + + YT Sbjct: 247 RHSFATHLLEHGADLRVVQEILGHTDISTTQIYT 280 >gi|330959145|gb|EGH59405.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv. maculicola str. ES4326] Length = 298 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 55/239 (23%), Positives = 101/239 (42%), Gaps = 23/239 (9%) Query: 112 RKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171 R++ H+ V++ + P S +FL+ R +++ +R++ +AI+P L ++ P+ Sbjct: 53 REVILDHLAWRVDN-AYKPRSTARFLSGARGFYRYLLREKLIAIDPTLQIDMPQLGKPLP 111 Query: 172 RPWTKEDMQQFKSF--WSE--GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ 227 + ++ D++ + SE G + R E L GLR ++ ++ + ++ Sbjct: 112 KSLSEADVEALLAAPDLSEPIGQRDRAVLEVLYACGLRVTELISLTLEQVNLRQGVLRVM 171 Query: 228 KTGT-----------IITVE--LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFK 274 G+ I+ VE L +LL P + F + +M F K Sbjct: 172 GKGSKERLVPMGEEAIVWVERYLRGARDELLGGKP--SDVLFPSTRGDQMTRQTFWHRIK 229 Query: 275 AKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 +AT AG+ KS H +R AT + GA + G + + YT A R RL Sbjct: 230 HQATVAGIGKSLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-RARL 287 >gi|330997435|ref|ZP_08321286.1| tyrosine recombinase XerD [Paraprevotella xylaniphila YIT 11841] gi|329570809|gb|EGG52525.1| tyrosine recombinase XerD [Paraprevotella xylaniphila YIT 11841] Length = 317 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 54/222 (24%), Positives = 95/222 (42%), Gaps = 21/222 (9%) Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK--RKTEGIRPWTKED--MQQFKS 184 +P S + L+ +R +++ ++ + +P +E PK R+ + + D ++ Sbjct: 80 SPRSMARILSGIRSFYRFLYVEKEIEQDPTELLESPKIGRRLPEVLTVAEIDAMIEGIDL 139 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT---IITV------ 235 EG + R E L GLR S+ C + L I+ + G ++ + Sbjct: 140 SQPEGQRNRAILEMLYSCGLRVSELCGLRISDLFLEEGFIRVKGKGEKERLVPISGRAVH 199 Query: 236 ELPDGFM--KLLAMTPIGKETFFINNDKQKMNATQFSI--WFKAKATKAGVNK--SAHGV 289 EL + F+ L+ + P G E F + ++ ++ +I W K A AG+ K S H Sbjct: 200 ELENWFLCRNLIRIKP-GHEDFVFLSLRRGTALSRITIFYWVKELAVAAGIQKTISPHTF 258 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 R AT + GA + A G +++ E YT DR RL Sbjct: 259 RHSFATHLLEGGANLRVIQAMLGHESISTTEIYTH-IDRSRL 299 >gi|66044534|ref|YP_234375.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv. syringae B728a] gi|63255241|gb|AAY36337.1| Phage integrase:Phage integrase, N-terminal SAM-like [Pseudomonas syringae pv. syringae B728a] Length = 298 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 58/245 (23%), Positives = 105/245 (42%), Gaps = 23/245 (9%) Query: 112 RKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171 R++ H+ V++ + P S +FL+ R +++ +R++ +A++P L ++ P+ Sbjct: 53 REVILDHLAWRVDN-AYKPRSTARFLSGARGFYRYLLREKLIAVDPTLQIDMPQLGKPLP 111 Query: 172 RPWTKEDMQQFKSF--WSE--GSQPRLAFEFLLYSGLRCSD---------SCRAGVQHLQ 218 + ++ D++ + SE G + R E L GLR ++ + R GV + Sbjct: 112 KSLSEADVEALLAAPDLSEPIGERDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVM 171 Query: 219 NNIFSIKTQKTG--TIITVE--LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFK 274 + G +I+ VE L +LL P + F + +M F K Sbjct: 172 GKGSKERLVPMGEESIVWVERYLRGARDELLGGKP--SDVLFPSTRGDQMTRQTFWHRIK 229 Query: 275 AKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 +AT AG+ KS H +R AT + GA + G + + YT A R RL Sbjct: 230 HQATVAGIGKSLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-RARLQ 288 Query: 333 IKNSR 337 ++R Sbjct: 289 EMHAR 293 >gi|154488853|ref|ZP_02029702.1| hypothetical protein BIFADO_02161 [Bifidobacterium adolescentis L2-32] gi|154082990|gb|EDN82035.1| hypothetical protein BIFADO_02161 [Bifidobacterium adolescentis L2-32] Length = 308 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 57/272 (20%), Positives = 107/272 (39%), Gaps = 36/272 (13%) Query: 87 LAVNSRISFESYFDQII---RKSGDFDYRKITTKHIR--SGVESRKHTPSSAIQFLTSMR 141 L+ N+R ++ S ++ + RK G D ++T + +R S+ H SS + ++R Sbjct: 20 LSANTRRAYRSDVEECLVALRKQGCVDLNEVTIEDLRLWMAKSSKNHARSSMARKTVAVR 79 Query: 142 VLFKWAVRQEYVAINPCLSVERPK---------RKTEGIRPWTKEDMQQFKSFWSEGSQP 192 F WA + + NP S++ PK +T+ + + D ++ E + Sbjct: 80 GFFAWAYDHDMASANPAASLQTPKIPDTLPAVLNETQAQQLMDRVDEDGMEARSQEPNMK 139 Query: 193 RLA--------FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244 + A E L +G+R ++ V + ++K G V +P G Sbjct: 140 KQAIALRDAAMLELLYATGMRVAELVGLDVADVTFGNRTVKVTGKGDKQRV-MPFGAPAD 198 Query: 245 LAM------------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRK 291 A+ + + FF+ + ++ +A KAGV + S H +R Sbjct: 199 KALRDWLEHGRPVLCGDMSDDAFFLGSQGGRIGQRMVRKVVHDRARKAGVPDISPHALRH 258 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYT 323 +AT D GA E+ G ++ + YT Sbjct: 259 SAATHMLDGGADLREVQEMLGHSSLKTTQRYT 290 >gi|299142044|ref|ZP_07035178.1| tyrosine recombinase XerD [Prevotella oris C735] gi|298576506|gb|EFI48378.1| tyrosine recombinase XerD [Prevotella oris C735] Length = 307 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 52/229 (22%), Positives = 83/229 (36%), Gaps = 53/229 (23%) Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK--RKTEGIRPWTKEDM--QQFKSF 185 P S + L+ +R +++ + Y+ +P +E P + + + DM Q Sbjct: 73 PRSQSRILSGIRSFYRFLLLDGYIETDPTELLESPALGQHLPEVLSTAEVDMLEQSIDLS 132 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245 EG + R E L GLR S+ + L L DGF+++L Sbjct: 133 KPEGQRNRAIIEVLFSCGLRVSELVNLKLSQLY------------------LDDGFIRVL 174 Query: 246 A------MTPI----------------------GKETF-FINNDKQKMNATQFSIWFKAK 276 + PI G+E F F+N + T I K + Sbjct: 175 GKGSKERLVPISPRAIKELQLWFTDRVHLNIKPGEEDFVFLNRRGHHLTRTMILIMIKRQ 234 Query: 277 ATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 A +AG+ K S H +R AT GA + A G +++ E YT Sbjct: 235 AEEAGIKKTISPHTLRHSFATALLQGGADLRAIQAMLGHESIGTTEIYT 283 >gi|319653703|ref|ZP_08007800.1| hypothetical protein HMPREF1013_04417 [Bacillus sp. 2_A_57_CT2] gi|317394546|gb|EFV75287.1| hypothetical protein HMPREF1013_04417 [Bacillus sp. 2_A_57_CT2] Length = 178 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 32/113 (28%), Positives = 59/113 (52%), Gaps = 9/113 (7%) Query: 102 IIRKSGDFDYRKITTKHIR-----SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAIN 156 +I+ GD ITT+ I+ E + + I+F+ S LFKWA ++YV+IN Sbjct: 34 LIKYFGDIKITDITTESIKLYLGEVAAELKASSLCHRIRFIKS---LFKWAQEEKYVSIN 90 Query: 157 PCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDS 209 P +++ PK ++ + T+E+++ F+ + L FEF+ +G R ++ Sbjct: 91 PVSTIKEPKPESTIPKFLTEEEIELFREACKTTFEKAL-FEFMYSTGCRIGEA 142 >gi|330950740|gb|EGH51000.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae Cit 7] Length = 298 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 57/239 (23%), Positives = 103/239 (43%), Gaps = 23/239 (9%) Query: 112 RKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171 R++ H+ VE+ + P S +FL+ R +++ +R++ ++++P L ++ P+ Sbjct: 53 REVILDHLAWRVEN-AYKPRSTARFLSGARGFYRYLLREKLISVDPTLQIDMPQLGKPLP 111 Query: 172 RPWTKEDMQQFKSF--WSE--GSQPRLAFEFLLYSGLRCSD---------SCRAGVQHLQ 218 + ++ D++ + SE G + R E L GLR ++ + R GV + Sbjct: 112 KSLSEADVEALLAAPDLSEPIGERDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVM 171 Query: 219 NNIFSIKTQKTG--TIITVE--LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFK 274 + G +I+ VE L +LL P + F ++ +M F K Sbjct: 172 GKGSKERLVPMGEESIVWVERYLRGARDELLGGKP--SDVLFPSSRGDQMTRQTFWHRIK 229 Query: 275 AKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 +AT AG+ KS H +R AT + GA + G + + YT A R RL Sbjct: 230 HQATVAGIGKSLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-RARL 287 >gi|198245719|ref|YP_002216060.1| integrase protein [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|197940235|gb|ACH77568.1| integrase protein [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] Length = 329 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 46/171 (26%), Positives = 84/171 (49%), Gaps = 10/171 (5%) Query: 65 RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124 RK T L ++ SA + LA ++ + ++ I+ GD + + I +HIR ++ Sbjct: 55 RKNRITFIQLWRKFLASADYADLAPRTQKDYLAHEKYILAVFGDAEAKAIKPEHIRRYMD 114 Query: 125 SR-KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER-PKRKTEGIRPWTKEDMQQF 182 +R + + A +SM +F+W+ ++ YV NPC+ V++ PK + + R T E ++ Sbjct: 115 ARGQKSRVQANHEHSSMSRVFRWSYQRGYVPGNPCVGVDKFPKPQRD--RYITDE---EY 169 Query: 183 KSFWSEGSQP-RLAFEFLLYSGLRCSDSCRAG-VQHLQNNIFSIKTQKTGT 231 ++ ++ + R A E R SD + Q L+ IF I+ KTG Sbjct: 170 RAIYNNATPAVRAAMEIAYLCAARVSDVLKMNWNQILEKGIF-IQQGKTGV 219 >gi|303257603|ref|ZP_07343615.1| putative integrase/recombinase [Burkholderiales bacterium 1_1_47] gi|302859573|gb|EFL82652.1| putative integrase/recombinase [Burkholderiales bacterium 1_1_47] Length = 358 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 32/138 (23%), Positives = 62/138 (44%), Gaps = 19/138 (13%) Query: 114 ITTKHIRSGVESRKH----------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER 163 IT K I + +E R +PS+ + LT + +F++A++ E +NPC VE+ Sbjct: 99 ITKKTIENYIERRLQERAKNRDSNISPSTVNRELTILSDVFQYAIKNELTDVNPCRGVEK 158 Query: 164 PKRKTEGIRPWTKEDMQQ--FKSFWSEGSQPR-------LAFEFLLYSGLRCSDSCRAGV 214 P+ R + ED+++ W + P+ AF F +G+R + + Sbjct: 159 PREPEHRERVASGEDIEKLLLACGWDGHTVPKNKMQLAVAAFLFSCQTGMRAGELLKIEY 218 Query: 215 QHLQNNIFSIKTQKTGTI 232 + +N+ + + T T+ Sbjct: 219 SWIDDNVLHVPAEATKTL 236 >gi|282889659|ref|ZP_06298199.1| hypothetical protein pah_c003o054 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281500486|gb|EFB42765.1| hypothetical protein pah_c003o054 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 304 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 54/236 (22%), Positives = 102/236 (43%), Gaps = 27/236 (11%) Query: 111 YRKITTKHIRS---GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK-- 165 Y+ + +H+ + ++S + S+ + L S++V F + R+ + NP + +E PK Sbjct: 56 YQAVEPEHLIAFLGSLKSADYATSTISRTLVSLKVFFGFLKREGTIEQNPSMLLESPKLW 115 Query: 166 RKTEGIRPWTKED--MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS 223 + I + D M Q + ++G + R FE L SGLR S+ C + + + Sbjct: 116 QLLPDILDIEEVDLLMNQPDNKTAKGVRDRAIFELLYGSGLRVSEVCTLTIYSIDDQYIR 175 Query: 224 IKTQKTGTIITVELPDGFMKLLAMTPI-----------GKETFFINNDKQKMNATQFSIW 272 + + + I +P G L+A+ +++ F+ + M+ + SIW Sbjct: 176 VYGKGSKERI---VPIGSQALMAVDQYLSLYRWQWDSEKEQSLFVTLRGKSMD--RISIW 230 Query: 273 --FKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 K A +AG+ K S H +R AT + GA + G + + YT+ Sbjct: 231 RSIKEYAQQAGITKTISPHTLRHSFATHLLNNGADLRVIQDLLGHANISSTDRYTR 286 >gi|221369617|ref|YP_002520713.1| Phage integrase family protein [Rhodobacter sphaeroides KD131] gi|221162669|gb|ACM03640.1| Phage integrase family protein [Rhodobacter sphaeroides KD131] Length = 350 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 66/293 (22%), Positives = 108/293 (36%), Gaps = 36/293 (12%) Query: 62 NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121 + P TL+ LI+ Y+K+ + LA +R + + QI GD + + +R Sbjct: 40 DRPVHHDGTLQALITAYQKTPAFTDLAEATRKGYIRHIRQIEADFGDMPVQALADPRVRG 99 Query: 122 GV------ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175 ++K S+ F R+L WA + + +NPC E+P R G R Sbjct: 100 EFLDWRDRLAQKSKRSADYAFSVLARIL-SWAHDRRKIPVNPC---EKPGRLYAGSRA-- 153 Query: 176 KEDMQQFKSFWSEGSQP----------RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK 225 S W+E RL F +++G R +D + ++ Sbjct: 154 -------DSIWTEAQIAAFLAAAPRPVRLPFLLAIWTGQRQADILQLSWTAYDGKAIRLR 206 Query: 226 TQKTGTIITVELPDGFMKLLAMTPIGKETFFI--NNDKQKMNATQFSIWFKAKATKAGVN 283 KTG + + + + + T I + Q + F F AG+ Sbjct: 207 QSKTGRHMLIPVAQPLRDAMEEARARRRTLTICETSRGQPWTSDGFKTSFGKAQASAGIE 266 Query: 284 K-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK---GADRIRLG 332 + H +R + T A AG + E+ A G D +K G DR RLG Sbjct: 267 GVTFHDLRGTAVTFLALAGCSVPEIAALTGHSLKDAEGILSKHYLGRDR-RLG 318 >gi|237800088|ref|ZP_04588549.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv. oryzae str. 1_6] gi|331022943|gb|EGI03000.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv. oryzae str. 1_6] Length = 298 Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust. Identities = 54/239 (22%), Positives = 101/239 (42%), Gaps = 23/239 (9%) Query: 112 RKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171 R++ H+ VE+ + P S +FL+ R +++ +R++ +A++P L ++ P+ Sbjct: 53 REVILDHLAWRVEN-AYKPRSTARFLSGARGFYRYLLREKLIAVDPTLQIDMPQLGKPLP 111 Query: 172 RPWTKEDMQQFKSF--WSE--GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ 227 + ++ D++ + SE G + R E L GLR ++ ++ + ++ Sbjct: 112 KSLSEADVEALLAAPDLSEPIGERDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVM 171 Query: 228 KTGT-----------IITVE--LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFK 274 G+ I+ VE + +LL P + F + +M F K Sbjct: 172 GKGSKERLVPMGEEAIVWVERYMRGARDELLGGKP--SDVLFPSTRGDQMTRQTFWHRIK 229 Query: 275 AKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 +AT AG+ KS H +R AT + GA + G + + YT A R RL Sbjct: 230 HQATVAGIGKSLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-RARL 287 >gi|289675164|ref|ZP_06496054.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv. syringae FF5] Length = 298 Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust. Identities = 58/245 (23%), Positives = 105/245 (42%), Gaps = 23/245 (9%) Query: 112 RKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171 R++ H+ VE+ + P S +FL+ R +++ +R++ ++++P L ++ P+ Sbjct: 53 REVILDHLAWRVEN-AYKPRSTARFLSGARGFYRYLLREKLISVDPTLQIDMPQLGKPLP 111 Query: 172 RPWTKEDMQQFKSF--WSE--GSQPRLAFEFLLYSGLRCSD---------SCRAGVQHLQ 218 + ++ D++ + SE G + R E L GLR ++ + R GV + Sbjct: 112 KSLSEADVEALLAAPDLSEPIGERDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVM 171 Query: 219 NNIFSIKTQKTG--TIITVE--LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFK 274 + G +I+ VE L +LL P + F + +M F K Sbjct: 172 GKGSKERLVPMGEESIVWVERYLRGARDELLGGKP--SDVLFPSTRGDQMTRQTFWHRIK 229 Query: 275 AKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 +AT AG+ KS H +R AT + GA + G + + YT A R RL Sbjct: 230 HQATVAGIGKSLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-RARLQ 288 Query: 333 IKNSR 337 ++R Sbjct: 289 ELHAR 293 >gi|307269737|ref|ZP_07551067.1| phage integrase, SAM-like domain protein [Enterococcus faecalis TX4248] gi|306513847|gb|EFM82449.1| phage integrase, SAM-like domain protein [Enterococcus faecalis TX4248] Length = 301 Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust. Identities = 57/269 (21%), Positives = 108/269 (40%), Gaps = 49/269 (18%) Query: 105 KSGDFDYRKITTKHIRSGV--ESRKHTPSSAIQFLTS-MRVLFKWAVRQEYVAINPCLSV 161 KS + + ++ KHI+S + K +S I S ++ LF + + ++Y+ NP + + Sbjct: 39 KSINVEPLQLEKKHIKSWIIDMQEKEMQASTINVSVSRLKKLFDYMLIEKYIDYNPFVDI 98 Query: 162 ERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA------FEFLLYSGLRCSDSCRAGVQ 215 ER K + + I P +++Q + + +A ++ GLR S+ C + Sbjct: 99 ERLKEQRKVIYPLNDYEIKQMLTVAKKHPYKHIAQRNVVILMLMIECGLRISEVCEIRDE 158 Query: 216 HLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKE-------------------TFF 256 + NN I+ K D + +A++PI K+ F Sbjct: 159 DIMNNQIIIRKSKNN-------KD---RAVAVSPILKKEIIKYQRIKKRKYGLLEGNLFI 208 Query: 257 INNDKQKMNATQFSIWFKAKATKAGVNK------SAHGVRKFSATISADAGATAHELMAT 310 ++N +K+N SIW + K ++ S H +R A++ G + L Sbjct: 209 VSNLGKKLNEK--SIWQIMQEIKKQIDIRDCVRFSGHTLRHTYASMQLRNGLDIYTLSLN 266 Query: 311 YGWKTVDQAETYTK---GADRIRLGIKNS 336 G +++ + Y + D I IK S Sbjct: 267 MGHSSIEMTQRYVQTLNSEDFIEKSIKTS 295 >gi|229592394|ref|YP_002874513.1| site-specific tyrosine recombinase XerD [Pseudomonas fluorescens SBW25] gi|229364260|emb|CAY51975.1| integrase/recombinase [Pseudomonas fluorescens SBW25] Length = 298 Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust. Identities = 55/239 (23%), Positives = 102/239 (42%), Gaps = 23/239 (9%) Query: 112 RKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171 R++ H+ +E + + P S +FL+ +R +++ +R++ +A++P L VE P+ Sbjct: 53 RELILDHLAWRLE-QNYKPRSTARFLSGVRGFYRYLLREKLIALDPTLQVEMPQLGRPLP 111 Query: 172 RPWTKEDMQQFKSF--WSE--GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ 227 + ++ D+ + SE G + R E L GLR ++ ++ + ++ Sbjct: 112 KSLSEADVDALLAAPDLSEAIGQRDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVM 171 Query: 228 KTGT-----------IITVE--LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFK 274 G+ I+ VE + D +LL P + F + ++M F K Sbjct: 172 GKGSKERLVPMGEEAIVWVERYMRDARGELLGGRP--SDVLFPSLRGEQMTRQTFWHRIK 229 Query: 275 AKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 +A AG+ K S H +R AT + GA + G + + YT A R RL Sbjct: 230 HQAKVAGIGKALSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-RARL 287 >gi|167032086|ref|YP_001667317.1| site-specific tyrosine recombinase XerD [Pseudomonas putida GB-1] gi|166858574|gb|ABY96981.1| tyrosine recombinase XerD [Pseudomonas putida GB-1] Length = 298 Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust. Identities = 52/216 (24%), Positives = 86/216 (39%), Gaps = 21/216 (9%) Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---- 185 P S +FL+ +R F++ +R+ VAI+P L V+ P+ + ++ D++ Sbjct: 70 PRSTARFLSGLRGFFRYLLRERLVAIDPTLQVDMPQLGKPLPKSLSEADVEALLQAPDLG 129 Query: 186 WSEGSQPRLAFEFLLYSGLRCSD---------SCRAGVQHLQNNIFSIKTQKTGTIITVE 236 + G + R E L GLR ++ + R GV + + G V Sbjct: 130 EAIGQRDRAMLEVLYACGLRVTELVSLTLDQVNLRQGVLRVMGKGSKERLVPMGEEAVVW 189 Query: 237 LP----DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290 L DG +LL P + F + ++M F K A AG++K S H +R Sbjct: 190 LERYQRDGRAELLNGRP--SDVLFPSLRGEQMTRQTFWHRIKHHARVAGIDKPLSPHTLR 247 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 AT + GA + G + + YT A Sbjct: 248 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA 283 >gi|28871200|ref|NP_793819.1| site-specific recombinase, phage integrase family [Pseudomonas syringae pv. tomato str. DC3000] gi|28854450|gb|AAO57514.1| site-specific recombinase, phage integrase family [Pseudomonas syringae pv. tomato str. DC3000] Length = 325 Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust. Identities = 45/208 (21%), Positives = 88/208 (42%), Gaps = 12/208 (5%) Query: 108 DFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167 +F+ R++ +H+ + TP+ A + ++ +R++F +A+ ++ V NPC + +R Sbjct: 91 EFEPRQVLPRHVAALKLHMADTPNMANRVISFLRMVFAYALERQIVDSNPCTGI---RRH 147 Query: 168 TEGIRPWTKEDMQQFKSFWSEGSQ-PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226 E R D +F + + S+ + +E +G R SD + + + + + Sbjct: 148 AEKKRDRYISD-AEFAAICAASSEYMSVIWEMCFLTGQRISDVLNIKLSDISDVGIAFEQ 206 Query: 227 QKTGTIITVELPDGFMKLLAMTPI------GKETFFINNDKQKMNATQFSIWFKAKATKA 280 QKTG + V + LL G F + + ++ + F+A A Sbjct: 207 QKTGAKLIVAMSPDLKALLDRVHALPRKVRGATLFCARSGGKPVSYDTCKMGFRAACKAA 266 Query: 281 GV-NKSAHGVRKFSATISADAGATAHEL 307 GV + H +R S T + G A L Sbjct: 267 GVKGATIHDLRAKSLTDTDRQGNNAQML 294 >gi|206890528|ref|YP_002247908.1| tyrosine recombinase XerD [Thermodesulfovibrio yellowstonii DSM 11347] gi|206742466|gb|ACI21523.1| tyrosine recombinase XerD [Thermodesulfovibrio yellowstonii DSM 11347] Length = 294 Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust. Identities = 47/224 (20%), Positives = 94/224 (41%), Gaps = 15/224 (6%) Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 ++ + ++ +S + L+S++ F++ + + +P ++ PK + +++++ Sbjct: 60 NLKEKAYSSTSIARILSSLKQFFRFMIFDSIINHDPTEGLKSPKLWLRLPKALEIDEVKR 119 Query: 182 FKSFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT---IITV 235 S E + E + SGLR S+ R + + I+ + G ++ + Sbjct: 120 LLSVMLESKYYLRDIAMLELMYASGLRVSELVRLKLSDINFEAGFIRVKGKGDKERVVPI 179 Query: 236 ------ELPDGFMKL--LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAH 287 ++ + +KL + + E F+NN Q M +F KA AGVN + H Sbjct: 180 AQRSIDKIKNYLVKLRPVLLKKKASEYVFLNNRGQPMTRQRFWQNIKAIGRIAGVNVTPH 239 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIR 330 +R AT + GA L G + + YTK DR+R Sbjct: 240 MIRHSFATHLLEGGADLRSLQKMLGHSDISTTQIYTKVSMDRLR 283 >gi|330975463|gb|EGH75529.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 298 Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust. Identities = 57/239 (23%), Positives = 102/239 (42%), Gaps = 23/239 (9%) Query: 112 RKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171 R++ H+ VE+ + P S +FL+ R +++ +R++ ++++P L ++ P+ Sbjct: 53 REVILDHLAWRVEN-AYKPRSTARFLSGARGFYRYLLREKLISVDPTLQIDMPQLGKPLP 111 Query: 172 RPWTKEDMQQFKSF--WSE--GSQPRLAFEFLLYSGLRCSD---------SCRAGVQHLQ 218 + ++ D++ + SE G + R E L GLR ++ + R GV + Sbjct: 112 KSLSEADVEALLAAPDLSEPIGERDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVM 171 Query: 219 NNIFSIKTQKTG--TIITVE--LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFK 274 + G +I+ VE L +LL P + F + +M F K Sbjct: 172 GKGSKERLVPMGEESIVWVERYLRGARDELLGGKP--SDVLFPSTRGDQMTRQTFWHRIK 229 Query: 275 AKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 +AT AG+ KS H +R AT + GA + G + + YT A R RL Sbjct: 230 HQATVAGIGKSLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-RARL 287 >gi|297620964|ref|YP_003709101.1| Tyrosine recombinase XerD [Waddlia chondrophila WSU 86-1044] gi|297376265|gb|ADI38095.1| Tyrosine recombinase XerD [Waddlia chondrophila WSU 86-1044] Length = 292 Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust. Identities = 53/217 (24%), Positives = 88/217 (40%), Gaps = 14/217 (6%) Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 S ++SR+ S+ + L +++V F++ R+ V N L ++ PK T E+M+ Sbjct: 58 SYLKSRQLAVSTISRHLIAIKVFFRFLKREGVVENNVSLYLQSPKGWQIIPDVLTMEEME 117 Query: 181 ----QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI--KTQKTGTI-I 233 Q SEG + R E L GLR S+ C+ ++ L+ + K +K + + Sbjct: 118 ILLNQPDPETSEGVRDRAILELLYACGLRVSELCQMKIEDLEEETVRVFGKGRKERIVPL 177 Query: 234 TVELPDGFMKLLAMTPIGKET-----FFINNDKQKMNATQFSIWFKAKATKAGVNKSA-- 286 + LA K F+N + MN K +AG+ KS Sbjct: 178 GSHASQAINRYLAKRADCKSIDEAGYLFVNKRGKPMNRVLIWKMIKEYGAQAGITKSLSP 237 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 H +R AT D GA + G ++ + YT Sbjct: 238 HTMRHSFATHLLDNGAELRVIQEMLGHASISSTDRYT 274 >gi|57234468|ref|YP_181457.1| tyrosine recombinase XerC [Dehalococcoides ethenogenes 195] gi|57224916|gb|AAW39973.1| tyrosine recombinase XerC [Dehalococcoides ethenogenes 195] Length = 307 Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust. Identities = 61/272 (22%), Positives = 111/272 (40%), Gaps = 22/272 (8%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDY--RKITTKHIRSGVESRKH 128 L++L E SA+ I F +Y I +K FD R I ++ S +E + Sbjct: 9 LEYLTVEKNVSAYTLRNYRTDLIGFVNYL--IEKKVSSFDKVDRYILRDYMSSLIE-KGI 65 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF----KS 184 S + L+++R +++ +R+ + NP L+ P+ T ++ + S Sbjct: 66 VKGSIARKLSAVRSFYRYLMREGLIQKNPTLNASSPRLDKRLPEFLTTAEVNKLLRIPDS 125 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT---IITVELP--- 238 +G + + E L SGLR S+ + +++L + I+ G+ I+ + LP Sbjct: 126 STPQGLRDKAFMELLYASGLRVSELVKLDIENLDLHSHQIRVWGKGSKERIVLMGLPAIQ 185 Query: 239 --DGFMKLLAMTPIGKET---FFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRK 291 ++ L GK F+N + +++A F A +AG+ K H +R Sbjct: 186 SIQTYLNLGRPLLKGKRNTPALFLNPNGGRLSARSFQERLDKLAHQAGIEKHVHPHMLRH 245 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYT 323 AT D GA + G + + YT Sbjct: 246 TFATHLLDGGADLRVVQELLGHSNLSTTQIYT 277 >gi|330985052|gb|EGH83155.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv. lachrymans str. M301315] Length = 298 Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust. Identities = 54/239 (22%), Positives = 101/239 (42%), Gaps = 23/239 (9%) Query: 112 RKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171 R++ H+ VE+ + P S +FL+ R +++ +R++ ++++P L ++ P+ Sbjct: 53 REVILDHLAWRVEN-AYKPRSTARFLSGARGFYRYLLREKLISVDPTLQIDMPQLGKPLP 111 Query: 172 RPWTKEDMQQFKSF--WSE--GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ 227 + ++ D++ + SE G + R E L GLR ++ ++ + ++ Sbjct: 112 KSLSEADVEALLAAPDLSEPIGERDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVM 171 Query: 228 KTGT-----------IITVE--LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFK 274 G+ I+ VE L +LL P + F + +M F K Sbjct: 172 GKGSKERLVPMGEEAIVWVERYLRGARDELLGGKP--SDVLFPSTRGDQMTRQTFWHRIK 229 Query: 275 AKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 +AT AG+ KS H +R AT + GA + G + + YT A R RL Sbjct: 230 HQATVAGIGKSLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-RARL 287 >gi|289625892|ref|ZP_06458846.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289646210|ref|ZP_06477553.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv. aesculi str. 2250] gi|298488278|ref|ZP_07006311.1| Site-specific recombinase XerD [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298157217|gb|EFH98304.1| Site-specific recombinase XerD [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|330867528|gb|EGH02237.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 298 Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust. Identities = 54/239 (22%), Positives = 101/239 (42%), Gaps = 23/239 (9%) Query: 112 RKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171 R++ H+ VE+ + P S +FL+ R +++ +R++ ++++P L ++ P+ Sbjct: 53 REVILDHLAWRVEN-AYKPRSTARFLSGARGFYRYLLREKLISVDPTLQIDMPQLGKPLP 111 Query: 172 RPWTKEDMQQFKSF--WSE--GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ 227 + ++ D++ + SE G + R E L GLR ++ ++ + ++ Sbjct: 112 KSLSEADVEALLAAPDLSEPIGERDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVM 171 Query: 228 KTGT-----------IITVE--LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFK 274 G+ I+ VE L +LL P + F + +M F K Sbjct: 172 GKGSKERLVPMGEEAIVWVERYLRGARDELLGGKP--SDVLFPSTRGDQMTRQTFWHRIK 229 Query: 275 AKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 +AT AG+ KS H +R AT + GA + G + + YT A R RL Sbjct: 230 HQATVAGIGKSLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-RARL 287 >gi|227890931|ref|ZP_04008736.1| site-specific DNA tyrosine recombinase, XerD [Lactobacillus salivarius ATCC 11741] gi|227867340|gb|EEJ74761.1| site-specific DNA tyrosine recombinase, XerD [Lactobacillus salivarius ATCC 11741] Length = 290 Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust. Identities = 52/254 (20%), Positives = 116/254 (45%), Gaps = 28/254 (11%) Query: 99 FDQIIRKSGDFDYRKITTKHIRSGVESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAI 155 F + +R++ ++++ + I + +++ K+ SS ++ ++S+R F++ +++ + Sbjct: 28 FLEYLRENEIPSFKQVNKEVIVNYMQAEKNNNKANSSILRSVSSLRKFFQYLAQEKIIEK 87 Query: 156 NPCLSVERPKRKTEGIRPWTKEDMQQF----KSFWSEGSQPRLAFEFLLYSGLRCSDSCR 211 +P L ++ PK+K + TKE++++ + G + R E + +GLR S+ Sbjct: 88 DPMLLIDTPKKKQHLPQVLTKEEVEKLLHSPNTGQVLGLRDRAMLELMYATGLRISEIIN 147 Query: 212 AGVQHLQNNIFSIKTQKTGT---IITVE----------LPDGFMKLLAMTPIGKETFFIN 258 ++ L + +++T G I+ V L + KLL K + ++ Sbjct: 148 LKLEDLHLTMGTLQTLGKGHKERIVPVGDEAIKWVNRYLEEARPKLLKQ----KRSNYLF 203 Query: 259 NDKQKMNATQFSIW--FKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWK 314 + N T+ +W KA+ KAG+ K+ H +R AT + GA + G Sbjct: 204 LNFHGNNLTRQGVWKNLKAEVRKAGIQKNITPHTLRHSFATHILENGADLRIVQELLGHA 263 Query: 315 TVDQAETYTKGADR 328 + + YT +++ Sbjct: 264 DISTTQIYTHLSNK 277 >gi|70728483|ref|YP_258232.1| site-specific tyrosine recombinase XerD [Pseudomonas fluorescens Pf-5] gi|68342782|gb|AAY90388.1| tyrosine recombinase XerD [Pseudomonas fluorescens Pf-5] Length = 298 Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust. Identities = 54/239 (22%), Positives = 102/239 (42%), Gaps = 23/239 (9%) Query: 112 RKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171 R++ H+ VE + + P S +FL+ +R +++ +R++ + I+P L ++ P+ Sbjct: 53 RELILDHLAWRVE-QAYKPRSTARFLSGVRGFYRYLLREKLIEIDPTLQIDMPQLGRPLP 111 Query: 172 RPWTKEDMQQFKSF--WSE--GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ 227 + ++ D++ + SE G + R E L GLR ++ ++ + ++ Sbjct: 112 KSLSEADVEALLAAPDLSEAIGQRDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVM 171 Query: 228 KTGT-----------IITVE--LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFK 274 G+ I+ VE + D +LL P + F + ++M F K Sbjct: 172 GKGSKERLVPMGEEAIVWVERYMRDARAELLGGRP--SDVLFPSLRGEQMTRQTFWHRIK 229 Query: 275 AKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 +A AG+ K S H +R AT + GA + G + + YT A R RL Sbjct: 230 HQAKVAGIGKALSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-RARL 287 >gi|320323174|gb|EFW79263.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv. glycinea str. B076] gi|320329555|gb|EFW85544.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv. glycinea str. race 4] Length = 298 Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust. Identities = 54/239 (22%), Positives = 101/239 (42%), Gaps = 23/239 (9%) Query: 112 RKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171 R++ H+ VE+ + P S +FL+ R +++ +R++ ++++P L ++ P+ Sbjct: 53 REVILDHLAWRVEN-AYKPRSTARFLSGARGFYRYLLREKLISVDPTLQIDMPQLGKPLP 111 Query: 172 RPWTKEDMQQFKSF--WSE--GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ 227 + ++ D++ + SE G + R E L GLR ++ ++ + ++ Sbjct: 112 KSLSEADVEALLAAPDLSEPIGERDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVM 171 Query: 228 KTGT-----------IITVE--LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFK 274 G+ I+ VE L +LL P + F + +M F K Sbjct: 172 GKGSKERLVPMGEEAIVWVERYLRGARDELLGGKP--SDVLFPSTRGDQMTRQTFWHRIK 229 Query: 275 AKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 +AT AG+ KS H +R AT + GA + G + + YT A R RL Sbjct: 230 HQATVAGIGKSLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHLA-RARL 287 >gi|71736133|ref|YP_273616.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv. phaseolicola 1448A] gi|71556686|gb|AAZ35897.1| tyrosine recombinase XerD [Pseudomonas syringae pv. phaseolicola 1448A] Length = 298 Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust. Identities = 54/239 (22%), Positives = 101/239 (42%), Gaps = 23/239 (9%) Query: 112 RKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171 R++ H+ VE+ + P S +FL+ R +++ +R++ ++++P L ++ P+ Sbjct: 53 REVILDHLAWRVEN-AYKPRSTARFLSGARGFYRYLLREKLISVDPTLQIDMPQLGKPLP 111 Query: 172 RPWTKEDMQQFKSF--WSE--GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ 227 + ++ D++ + SE G + R E L GLR ++ ++ + ++ Sbjct: 112 KSLSEADVEALLAAPDLSEPIGERDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVM 171 Query: 228 KTGT-----------IITVE--LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFK 274 G+ I+ VE L +LL P + F + +M F K Sbjct: 172 GKGSKERLVPMGEEAIVWVERYLRGARDELLGGKP--SDVLFPSTRGDQMTRQTFWHRIK 229 Query: 275 AKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 +AT AG+ KS H +R AT + GA + G + + YT A R RL Sbjct: 230 HQATVAGIGKSLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-RARL 287 >gi|257487154|ref|ZP_05641195.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv. tabaci ATCC 11528] gi|331009225|gb|EGH89281.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 298 Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust. Identities = 54/239 (22%), Positives = 101/239 (42%), Gaps = 23/239 (9%) Query: 112 RKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171 R++ H+ VE+ + P S +FL+ R +++ +R++ ++++P L ++ P+ Sbjct: 53 REVILDHLAWRVEN-AYKPRSTARFLSGARGFYRYLLREKLISVDPTLQIDMPQLGKPLP 111 Query: 172 RPWTKEDMQQFKSF--WSE--GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ 227 + ++ D++ + SE G + R E L GLR ++ ++ + ++ Sbjct: 112 KSLSEADVEALLAAPDLSEAIGERDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVM 171 Query: 228 KTGT-----------IITVE--LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFK 274 G+ I+ VE L +LL P + F + +M F K Sbjct: 172 GKGSKERLVPMGEEAIVWVERYLRGARDELLGGKP--SDVLFPSTRGDQMTRQTFWHRIK 229 Query: 275 AKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 +AT AG+ KS H +R AT + GA + G + + YT A R RL Sbjct: 230 HQATVAGIGKSLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-RARL 287 >gi|116492850|ref|YP_804585.1| tyrosine recombinase XerD subunit [Pediococcus pentosaceus ATCC 25745] gi|116103000|gb|ABJ68143.1| tyrosine recombinase XerD subunit [Pediococcus pentosaceus ATCC 25745] Length = 295 Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust. Identities = 64/276 (23%), Positives = 115/276 (41%), Gaps = 28/276 (10%) Query: 74 LISEYRKSAHWG-SLAVNSRISFES---YFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129 LI++Y S L+ N+ IS+ + + + K D +KI I ++ K T Sbjct: 4 LINDYLHSLKVERGLSDNTIISYRQELRHLNDYLTKEKITDIKKIDRYAILDYLDELKKT 63 Query: 130 P---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 SS+I ++S+R FK+ + + + ++P ++++ PKR T ++++ Sbjct: 64 GRARSSSIHTISSLRKFFKYLLIVDKIDVDPMVNIDPPKRAHHLPSVLTTAEVEKLLQVP 123 Query: 187 SE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT---IITVELPD 239 + G + R E + +GLR S+ + L + I+T G II + D Sbjct: 124 NTNEPLGMRDRTILEVMYATGLRVSELITLNLNELHLEMGLIETIGKGNKKRIIPI--GD 181 Query: 240 GFMKLLAMTPIGKETFFINNDKQK---MN-----ATQFSIW--FKAKATKAGVNKSA--H 287 +K L G + + K +N T+ IW KA+ KAG+ K+ H Sbjct: 182 VAIKWLNRYINGPRRILLGDKKYNEIFLNQHGHPLTRQGIWKNLKAQVKKAGIEKNITPH 241 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 +R AT + GA + G + + YT Sbjct: 242 TLRHSFATHLLENGADLRIVQELLGHADISTTQIYT 277 >gi|239828168|ref|YP_002950792.1| integrase [Geobacillus sp. WCH70] gi|239808461|gb|ACS25526.1| integrase family protein [Geobacillus sp. WCH70] Length = 329 Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust. Identities = 53/248 (21%), Positives = 110/248 (44%), Gaps = 23/248 (9%) Query: 97 SYFDQIIRKSG-DFDYRKITTKHIRSGV----ESRKHTPSSAIQF-LTSMRVLFKWAVRQ 150 S F +I+R+ G + + ++T + I+ V +++K+ + I L ++R F + R+ Sbjct: 57 SVFYKILREQGIEVNIYRMTPEIIKQNVILYMKNQKNCKTVTINTRLRALRAFFNFLERE 116 Query: 151 EYVA--INPCLSVERPKRKTEGIRPWTKEDMQ------QFKSFWSEGSQPRLAFEFLLYS 202 + ++ NP ++ K + + + +TKE++ ++F G + LL + Sbjct: 117 KIISKKQNPFHEIKLLKDRKKAVPTFTKEEIHILFKQPNLRTFT--GVRDLTIMMLLLET 174 Query: 203 GLRCSDSC--RAGVQHLQNNIFSIKTQK----TGTIITVELPDGFMKLLAMT-PIGKETF 255 G+R S+ R G Q + I+ K I ++ + K LA+ + + Sbjct: 175 GIRASECVGIRLGDIDFQRSRILIQNTKGYRQRYVPIQKQMKEQLKKYLAIRGTLDHDYL 234 Query: 256 FINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKT 315 F++ D + Q ++ K G++ + H R A +S +AGA EL A G + Sbjct: 235 FVSVDDTPLTKRQMQAQIESYGKKCGIHATCHKFRHTFARLSVEAGAGIFELQAVLGHSS 294 Query: 316 VDQAETYT 323 ++ + Y Sbjct: 295 MEMVKHYV 302 >gi|160884146|ref|ZP_02065149.1| hypothetical protein BACOVA_02123 [Bacteroides ovatus ATCC 8483] gi|156110488|gb|EDO12233.1| hypothetical protein BACOVA_02123 [Bacteroides ovatus ATCC 8483] Length = 319 Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust. Identities = 53/238 (22%), Positives = 96/238 (40%), Gaps = 20/238 (8%) Query: 105 KSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP 164 K G D +H +G+ P S + L+ ++ F++ + ++Y+ +P +E P Sbjct: 53 KVGILDVCLSDLQHFAAGLHDIGIHPRSQARILSGIKSFFRFLIIEDYLEADPSELLEGP 112 Query: 165 KRKTEGIRPWTKEDMQQFKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN 220 K + T E++ + S +EG + R E L GLR S+ + L + Sbjct: 113 KIGFKLPEVLTVEEIDRIISAVDRSKAEGQRNRAILETLYSCGLRVSELVTLKLSDLYFD 172 Query: 221 IFSIKTQKTGT---IITVELPDGFMKLLAMTPI--------GKETFFINNDKQKMNATQF 269 IK + G+ ++ + P ++ P G E F + ++ ++ Sbjct: 173 EGFIKVEGKGSKQRLVPIS-PRAINEIKLYIPDRNQIEVKKGHEDFVFVSQRRGKGLSRI 231 Query: 270 SIW--FKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 I+ K A KAG+ K S H R AT + GA + G +++ E YT Sbjct: 232 MIFHMIKELAEKAGITKNISPHTFRHSFATHLLEGGANLRAIQCMLGHESIATTEIYT 289 >gi|104773902|ref|YP_618882.1| site-specific recombinase [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|103422983|emb|CAI97665.1| Site-specific recombinase [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] Length = 298 Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust. Identities = 48/214 (22%), Positives = 92/214 (42%), Gaps = 24/214 (11%) Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQFKSFW 186 SS + ++++ ++W VRQ+ +A++P ++ PKR+ T+ + ++Q Sbjct: 70 SSISRLVSTLSRFYQWLVRQQLIALDPMSQIDAPKREKRMPLALTEAEVGKLLEQPDLTT 129 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT---IITVE------- 236 G + R E L +G+R S++ + + N+ IK G+ +I V Sbjct: 130 DLGIRDRALLELLYATGMRVSEAVNLQLADVHANLQLIKVLGKGSKERLIPVSALALDWI 189 Query: 237 ---LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAK--ATKAGVNKSA--HGV 289 LP +LL GK + ++ + + T+ ++W K K +AG+ K H + Sbjct: 190 KRYLPVRDQQLLKR---GKSSDYLFLNSRGGQLTRQAVWQKIKKYCQQAGIAKDVTPHTL 246 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYT 323 R AT + GA + G + + YT Sbjct: 247 RHSFATHLLEHGADLRVVQEILGHTDISTTQIYT 280 >gi|160884990|ref|ZP_02065993.1| hypothetical protein BACOVA_02986 [Bacteroides ovatus ATCC 8483] gi|156109340|gb|EDO11085.1| hypothetical protein BACOVA_02986 [Bacteroides ovatus ATCC 8483] Length = 405 Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust. Identities = 55/225 (24%), Positives = 93/225 (41%), Gaps = 32/225 (14%) Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP--WTKEDMQQFKS--FWSE 188 A+ + + + + +AV + +A NPC V K + +R + E+MQ S + +E Sbjct: 186 ALDYYSKFKKVINYAVDNDVIAKNPCKGVV-CKCDKQVLRKDVLSLEEMQALISTHYDNE 244 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-------NNIFSIKTQKT-----GTIITVE 236 + R AF F LY+G+R D VQ L+ N I S + KT + + + Sbjct: 245 NPEIRRAFIFCLYTGIRFCD-----VQDLKYSNVDYSNKILSFEQNKTKGHSANSGVVIP 299 Query: 237 LPDGFMKLLA---MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRK 291 L D ++L+ +ET F + +AT + +AG+ K H R Sbjct: 300 LNDDLLQLIGEPHTEQYEQETIF-----RLPSATMCLKALRRWTKRAGITKHITWHCARH 354 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336 A + GA + + G + E YT+ D ++ NS Sbjct: 355 SFAVNILNNGANIKTVASLLGHSGLKHTEKYTRAVDSLKEAAINS 399 >gi|149914829|ref|ZP_01903359.1| Integrase [Roseobacter sp. AzwK-3b] gi|149811622|gb|EDM71457.1| Integrase [Roseobacter sp. AzwK-3b] Length = 308 Score = 46.2 bits (108), Expect = 0.008, Method: Compositional matrix adjust. Identities = 60/233 (25%), Positives = 101/233 (43%), Gaps = 18/233 (7%) Query: 107 GDFDYRKITTKHIRSGVES-RKHTPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERP 164 GD R++ +H+ + + P +A L +++ + WA E + +P VER Sbjct: 54 GDLPARELRPRHVDALIRKIGADKPGAANNILDALKAMVSWANGPVELLTHDPTQGVERF 113 Query: 165 KRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224 K EG RPWT + + + ++ G+ R F Y+G R SD R + + FS+ Sbjct: 114 S-KGEGHRPWTSQQLAFAEQVFT-GTIRRFFF-LSRYTGQRISDVVRLSPNDVDDGGFSL 170 Query: 225 KTQKTGTIITVELPDGFMKLLA--MTPIGKETFFINNDKQKMNATQFS---IW--FKAKA 277 +KTG + F +L A +T + ++ K FS +W F + Sbjct: 171 PQKKTGVKPWCPI---FPELEAEMVTWERRPGPYLLQSSGKSAGKPFSTNQMWKAFDRER 227 Query: 278 TKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 K V A HG+R + G TA ++ G +V+ E+Y++ ADR Sbjct: 228 KKYSVLSGAVPHGLRANAVIRLRGEGYTALQISDMVG-MSVEMVESYSRHADR 279 >gi|329888682|ref|ZP_08267280.1| phage integrase family protein [Brevundimonas diminuta ATCC 11568] gi|328847238|gb|EGF96800.1| phage integrase family protein [Brevundimonas diminuta ATCC 11568] Length = 374 Score = 46.2 bits (108), Expect = 0.008, Method: Compositional matrix adjust. Identities = 80/371 (21%), Positives = 142/371 (38%), Gaps = 69/371 (18%) Query: 11 VTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70 +TK+R ++ Y++ G RLP S P +M+A + +R +P K T Sbjct: 12 ITKKRADGSRVTYWYAWKGG--PRLPGSPGS---PEFMAAYNAAVAER---RAP--KTDT 61 Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS------GDFDYRKITTKHIRSGV- 123 L+ L Y++S + +L ++ + + D I+ S G + + + +++ + Sbjct: 62 LRSLAILYKQSPEYDALGDTTKREWTRWLDVIMDDSDAPLAIGGLPFDALDDRRVKAEIL 121 Query: 124 ------ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177 R IQ L+ RVL W + + +A+N +++ + WT E Sbjct: 122 AWRDQWADRPRKADYGIQVLS--RVL-SWGMDRGLLALNAAAGIKQLYTSNRADQIWTAE 178 Query: 178 DMQQFKSFWSEGSQPRLAF--EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIIT 234 +++++ + P + F ++GLR D H+ + T+K+ G Sbjct: 179 EIERYA---AAAKSPEVGFIVRLACHTGLRREDLASLCWSHVGDLAIVKATKKSRGKKTA 235 Query: 235 V-----------------------ELPDGFMKLLAMTPIGKETFFINNDKQ--KMNATQF 269 V EL D K P+ T N + ++ + Sbjct: 236 VIPLLDDTKALLEEIRAQQRRRHSELADSAAKKKRPAPVECLTVLSNTRGKPWSLDGLEH 295 Query: 270 SIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKT----------VDQA 319 + AKA AG+NK H R AT AG TA E+ GW+ VD+ Sbjct: 296 QV-VDAKAA-AGINKHLHDARGTFATRLRRAGLTAAEIADILGWEEDRVQRLLAVYVDRD 353 Query: 320 ETYTKGADRIR 330 + A+RIR Sbjct: 354 SIVMEIANRIR 364 >gi|227893483|ref|ZP_04011288.1| integrase-recombinase [Lactobacillus ultunensis DSM 16047] gi|227864708|gb|EEJ72129.1| integrase-recombinase [Lactobacillus ultunensis DSM 16047] Length = 303 Score = 46.2 bits (108), Expect = 0.008, Method: Compositional matrix adjust. Identities = 50/214 (23%), Positives = 92/214 (42%), Gaps = 23/214 (10%) Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQFKSFW 186 SS + ++SMR ++W RQ +NP L ++ PK++ T+E+ ++Q Sbjct: 74 SSISRLISSMRKFYQWLARQNIQKLNPMLEIDLPKKERRLPTALTQEEVNKLLEQPDVKR 133 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT---IITVE-LPDGFM 242 G + R E L +G+R S+ +Q L +++ ++ G+ +I + + ++ Sbjct: 134 KLGLRDRAILETLYATGMRVSELINLELQDLHDDLGLVRVIGKGSKERLIPISPVALNWI 193 Query: 243 K---------LLAMTPIGKETFFINNDKQKMNATQFSIW--FKAKATKAGVNKSA--HGV 289 K L+ E F+N+ + KM T+ +IW K AG+ K H + Sbjct: 194 KKYEKEVRDPLILHVGQNDEHIFLNS-RGKM-LTRQAIWQMIKKYCQMAGIVKDVTPHTL 251 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYT 323 R AT + GA + G + + YT Sbjct: 252 RHTFATHLLENGADLRVVQEILGHSDISTTQIYT 285 >gi|150003451|ref|YP_001298195.1| integrase [Bacteroides vulgatus ATCC 8482] gi|254881251|ref|ZP_05253961.1| integrase [Bacteroides sp. 4_3_47FAA] gi|294777667|ref|ZP_06743118.1| tyrosine recombinase XerD [Bacteroides vulgatus PC510] gi|319640253|ref|ZP_07994978.1| integrase [Bacteroides sp. 3_1_40A] gi|149931875|gb|ABR38573.1| integrase [Bacteroides vulgatus ATCC 8482] gi|254834044|gb|EET14353.1| integrase [Bacteroides sp. 4_3_47FAA] gi|294448735|gb|EFG17284.1| tyrosine recombinase XerD [Bacteroides vulgatus PC510] gi|317388028|gb|EFV68882.1| integrase [Bacteroides sp. 3_1_40A] Length = 313 Score = 46.2 bits (108), Expect = 0.008, Method: Compositional matrix adjust. Identities = 49/232 (21%), Positives = 89/232 (38%), Gaps = 17/232 (7%) Query: 109 FDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168 D R + +G+ P S + L+ +R +++ + ++Y+ +P +E P+ Sbjct: 51 LDVRLENLEDFSAGLHDIGIHPRSQARILSGIRSFYRFLIMEDYLKADPTELLESPQTGF 110 Query: 169 EGIRPWTKEDMQQFKSFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224 + T E++ EG + R E L GLR S+ C + L I Sbjct: 111 KLPEVMTVEEIDLLIGSIDRSTKEGQRNRAILETLYSCGLRVSELCNLKLSELYFEEGFI 170 Query: 225 KTQKTGT-----------IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWF 273 K + G+ I + L L+ + P ++ FI+N + ++ Sbjct: 171 KVEGKGSKQRLVPISPRAIKEIRLYFTDRNLMKIKPGFEDFVFISNFGKNISRIMVFHII 230 Query: 274 KAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 K A + G+ K S H R AT + GA + G +++ E YT Sbjct: 231 KELAARIGLKKKISPHTFRHSFATHLLEGGANLRAIQCMLGHESIGTTEIYT 282 >gi|296133169|ref|YP_003640416.1| tyrosine recombinase XerD [Thermincola sp. JR] gi|296031747|gb|ADG82515.1| tyrosine recombinase XerD [Thermincola potens JR] Length = 295 Score = 46.2 bits (108), Expect = 0.008, Method: Compositional matrix adjust. Identities = 44/212 (20%), Positives = 95/212 (44%), Gaps = 21/212 (9%) Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ----QFKSFW 186 S+ + L S++ +++ +R++++ +P +++E PK + + R + E+++ Q + Sbjct: 68 STISRHLASLKSFYQYLLREKHIEQDPTVNLESPKLQKKLPRVLSVEEVEILLNQPRLNE 127 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT---IITVE------- 236 GS+ + E L +G+R S+ + H+ + ++ G+ II + Sbjct: 128 PAGSRDKAMLELLYATGIRVSELISLDLDHVNLEMGYVRCFGKGSKERIIPIGSLAKKYV 187 Query: 237 ---LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRK 291 L G ++L+ G+ F+N+ ++M F K A +AG+ K + H +R Sbjct: 188 EEYLHRGRVRLIKSK--GETALFVNHHGRRMTRQGFWKIIKKYAREAGIKKDITPHTLRH 245 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYT 323 AT + GA + G + + YT Sbjct: 246 SFATHLLENGADLRSVQEMLGHADITTTQIYT 277 >gi|258541575|ref|YP_003187008.1| phage integrase (truncated middle) [Acetobacter pasteurianus IFO 3283-01] gi|256632653|dbj|BAH98628.1| phage integrase (truncated middle) [Acetobacter pasteurianus IFO 3283-01] gi|256635710|dbj|BAI01679.1| phage integrase (truncated middle) [Acetobacter pasteurianus IFO 3283-03] gi|256638765|dbj|BAI04727.1| phage integrase (truncated middle) [Acetobacter pasteurianus IFO 3283-07] gi|256641819|dbj|BAI07774.1| phage integrase (truncated middle) [Acetobacter pasteurianus IFO 3283-22] gi|256644874|dbj|BAI10822.1| phage integrase (truncated middle) [Acetobacter pasteurianus IFO 3283-26] gi|256647929|dbj|BAI13870.1| phage integrase (truncated middle) [Acetobacter pasteurianus IFO 3283-32] gi|256650982|dbj|BAI16916.1| phage integrase (truncated middle) [Acetobacter pasteurianus IFO 3283-01-42C] gi|256653973|dbj|BAI19900.1| phage integrase (truncated middle) [Acetobacter pasteurianus IFO 3283-12] Length = 101 Score = 46.2 bits (108), Expect = 0.008, Method: Compositional matrix adjust. Identities = 22/71 (30%), Positives = 38/71 (53%) Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS 202 +F++A + NP ++ K + W+++D++ F++FW GS+ RL LY+ Sbjct: 1 MFQYAFEHGWRQDNPVKDIKMLKYRKNPFPTWSEKDIRIFENFWPIGSRARLTLALFLYT 60 Query: 203 GLRCSDSCRAG 213 G R SD R G Sbjct: 61 GQRRSDVIRMG 71 >gi|304385052|ref|ZP_07367398.1| tyrosine recombinase XerD [Pediococcus acidilactici DSM 20284] gi|304329246|gb|EFL96466.1| tyrosine recombinase XerD [Pediococcus acidilactici DSM 20284] Length = 296 Score = 46.2 bits (108), Expect = 0.008, Method: Compositional matrix adjust. Identities = 45/212 (21%), Positives = 89/212 (41%), Gaps = 21/212 (9%) Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-- 188 SS+I ++S+R FK+ + + + NP ++++ PKR T E++++ Sbjct: 69 SSSIHTISSLRKFFKYLLLNDQIQTNPMVNIDPPKRAQHLPSVLTTEEVERLLKVPDTSK 128 Query: 189 --GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT--------IITVELP 238 G + R E + +GLR S+ + L + I+T G + ++ Sbjct: 129 PLGIRDRAILEVMYATGLRVSELIALNLNELHLEMGLIETVGKGNKQRIIPIGDVAIQWL 188 Query: 239 DGFMKLLAMTPIGKETF---FINNDKQKMNATQFSIW--FKAKATKAGVNKSA--HGVRK 291 + ++ +G + + F+N + T+ +W KA+ KAG+ K+ H +R Sbjct: 189 ERYINGPRRALLGAKRYNEIFLNQHGHPL--TRQGVWKNLKAQVQKAGIKKNITPHTLRH 246 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYT 323 AT + GA + G + + YT Sbjct: 247 SFATHLLENGADLRIVQELLGHADISTTQIYT 278 >gi|219852288|ref|YP_002466720.1| integrase family protein [Methanosphaerula palustris E1-9c] gi|219546547|gb|ACL16997.1| integrase family protein [Methanosphaerula palustris E1-9c] Length = 292 Score = 45.8 bits (107), Expect = 0.008, Method: Compositional matrix adjust. Identities = 28/133 (21%), Positives = 67/133 (50%), Gaps = 7/133 (5%) Query: 99 FDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPC 158 FDQ+ G D R++ T ++ + + ++ + + ++++ +++ Q VA+NP Sbjct: 48 FDQV----GGADDRRLITGYLSALSQEHGYSAKTLHRIISTLSSFYRFLYAQGAVAVNPV 103 Query: 159 LSVERPKRKTEGIRPWT-KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL 217 ++RPK K + +R ++ ++ +S S Q L + +G+R S+ C ++H+ Sbjct: 104 TGIDRPKIKRQELRYLKHRQVLKLIESMPSVRDQ--LVVRMIYATGVRVSELCGISIEHI 161 Query: 218 QNNIFSIKTQKTG 230 + +I+ + G Sbjct: 162 DFDDLTIRIRGKG 174 >gi|326803729|ref|YP_004321547.1| tyrosine recombinase XerD [Aerococcus urinae ACS-120-V-Col10a] gi|326651687|gb|AEA01870.1| tyrosine recombinase XerD [Aerococcus urinae ACS-120-V-Col10a] Length = 299 Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust. Identities = 52/249 (20%), Positives = 104/249 (41%), Gaps = 26/249 (10%) Query: 99 FDQIIRKSGDFDYRKITTKHIRSGVES---RKHTPSSAIQFLTSMRVLFKWAVRQEYVAI 155 F I+ ++G D + + + I +E+ + S+ Q+L+++R FK+ + + Sbjct: 35 FQMILSEAGIEDIQAVKRQDIIQQLENLNQKGRAVSTMSQYLSTLRHFFKYLILDSVIEE 94 Query: 156 NPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAFEFLLYSGLRCSDSCR 211 NP ++ PK+K + + + E++ + + G + R E L SGLR S+ Sbjct: 95 NPVENISLPKKKQQLPQVLSVEEVDRLLEMPDVNSTLGLRDRSLLELLYASGLRVSELVH 154 Query: 212 AGVQHLQNNIFSIKTQKTGT---IITVE----------LPDGFMKLLAMTPIGKETFFIN 258 + ++ ++T G II + L + +KLL + ++N Sbjct: 155 LKISDFHEDLGFLQTIGKGNKERIIPLGEVAKDWLQTYLKESRLKLLGENDQSQGMIYLN 214 Query: 259 NDKQKMNATQFSIWFKAKA--TKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWK 314 + + + ++ +W K K AG+ K S H +R AT + GA + G Sbjct: 215 HHGRPL--SRQGVWKKLKQYIQAAGITKEVSPHTLRHSFATHLLENGADLRVVQELLGHA 272 Query: 315 TVDQAETYT 323 + + YT Sbjct: 273 DISTTQIYT 281 >gi|319654979|ref|ZP_08009052.1| hypothetical protein HMPREF1013_05674 [Bacillus sp. 2_A_57_CT2] gi|317393333|gb|EFV74098.1| hypothetical protein HMPREF1013_05674 [Bacillus sp. 2_A_57_CT2] Length = 258 Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust. Identities = 52/240 (21%), Positives = 98/240 (40%), Gaps = 13/240 (5%) Query: 102 IIRKSGDFDYRKITTKHIRS--GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCL 159 +I+ GD ITT+ I+ G + + SS + ++ LFKWA ++YV+INP Sbjct: 13 LIKYFGDIKITDITTESIKLYLGEVAAELKASSLCHRIRFIKSLFKWAQEEKYVSINPVS 72 Query: 160 SVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN 219 S++ PK ++ + T+E+++ + + L FEF+ +G R + +H N Sbjct: 73 SIKEPKPESRIPKFLTEEEIELLREACKTTFEKAL-FEFMYSTGYRIGEVVNLD-KHSIN 130 Query: 220 N------IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFIN-NDKQKMNATQFSIW 272 +F ++ I + ++ F+ +M+ Q Sbjct: 131 MAEQSVIVFGKGKKEREVYINTRCSIWLKRYREERADDQQALFVTIRAPHRMSIAQMRYV 190 Query: 273 FKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 K + +AG+NK H +R AT + GA + G + + Y + +R Sbjct: 191 IKQISKRAGINKCIYPHQLRHSYATTLINNGAPLEVIQNLMGHEKSETTRVYAYLSGHLR 250 >gi|257485790|ref|ZP_05639831.1| Orf28 [Pseudomonas syringae pv. tabaci ATCC 11528] gi|302130312|ref|ZP_07256302.1| Orf28 [Pseudomonas syringae pv. tomato NCPPB 1108] gi|331012886|gb|EGH92942.1| Orf28 [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 319 Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust. Identities = 53/243 (21%), Positives = 98/243 (40%), Gaps = 25/243 (10%) Query: 99 FDQIIRKSGDFDYRKITTKHI---RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAI 155 F I + D+R++T H+ R+ +E R ++ + L ++ LF + VA Sbjct: 52 FSSFIGLASADDFRQVTRSHVLAWRADLEHRGLAGATIRRKLAALASLFDHLLENNAVAG 111 Query: 156 -NPCLSVERPKRKT-EGIRP-----WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSD 208 NP V+RP+ +T EG P K+ ++ + +G + R LLY GLR + Sbjct: 112 GNPVHGVKRPRIETNEGKTPALGDHQAKQLLEAPDTETLKGLRDRAILAVLLYHGLRREE 171 Query: 209 SCRAGVQHLQN--NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF--FINNDKQKM 264 + + LQ I ++ G+ I + L + P+ E ++ D ++ Sbjct: 172 AAQLHTHDLQERRGIKHLRVHGKGSKI---------RFLPLHPVAAERIHAYLEQDNERA 222 Query: 265 NATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 AT ++ + T G +A+G+ + AG E + +G + Sbjct: 223 -ATPGPLFRSLRGTTTGAGITANGIYTVVEAYAKKAGIVV-EHLGVHGLRATAATNALEH 280 Query: 325 GAD 327 AD Sbjct: 281 DAD 283 >gi|119026081|ref|YP_909926.1| site-specific tyrosine recombinase XerC [Bifidobacterium adolescentis ATCC 15703] gi|118765665|dbj|BAF39844.1| probable integrase [Bifidobacterium adolescentis ATCC 15703] Length = 329 Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust. Identities = 56/272 (20%), Positives = 108/272 (39%), Gaps = 36/272 (13%) Query: 87 LAVNSRISFESYFDQII---RKSGDFDYRKITTKHIR--SGVESRKHTPSSAIQFLTSMR 141 L+ N+R ++ S ++ + RK G D ++T + +R S+ H SS + ++R Sbjct: 41 LSANTRRAYRSDVEECLVALRKQGCVDLNEVTIEDLRLWMAESSKNHARSSMARKTVAVR 100 Query: 142 VLFKWAVRQEYVAINPCLSVERPK---------RKTEGIRPWTKEDMQQFKSFWSEGSQP 192 F WA + + NP S++ PK +T+ + + D ++ E + Sbjct: 101 GFFAWAYDHDMASANPAASLQTPKIPDTLPAVLNETQAQQLMDRVDEDGMEARSQEPNMK 160 Query: 193 RLA--------FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244 + A E L +G+R ++ V + ++K G V +P G Sbjct: 161 KQAIALRDAAMLELLYATGMRVAELVGLDVADVTFGNRTVKVTGKGDKQRV-MPFGAPAD 219 Query: 245 LAM------------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRK 291 A+ + + FF+ + +++ +A +AGV + S H +R Sbjct: 220 KALRDWLEHGRPVLCGDMSDDAFFLGSQGGRIDQRMVRKVVHDRAREAGVPDISPHALRH 279 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYT 323 +AT D GA E+ G ++ + YT Sbjct: 280 SAATHMLDGGADLREVQEMLGHSSLKTTQRYT 311 >gi|170742031|ref|YP_001770686.1| integrase family protein [Methylobacterium sp. 4-46] gi|168196305|gb|ACA18252.1| integrase family protein [Methylobacterium sp. 4-46] Length = 349 Score = 45.8 bits (107), Expect = 0.010, Method: Compositional matrix adjust. Identities = 48/232 (20%), Positives = 85/232 (36%), Gaps = 16/232 (6%) Query: 91 SRISFESYFDQIIRKSGDFDYRKITTKHIRS---------GVESRKHTPSSAIQFLTSMR 141 +R + + I ++ GDF +T + R V SR+ A + + Sbjct: 81 TRADYVRHIKVIEQEFGDFPLGALTDRRTRGEFLTWRDRLAVRSRRQ----ADYAWSVLA 136 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY 201 + WA+ + + NPC R R + + WT +D ++F + S + L L+ Sbjct: 137 RILSWALDRGLILANPCERGGRLYRASRTDKVWTDDDERRFLA--SAPAHLHLPLILALW 194 Query: 202 SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK 261 +G R D R +K KTG + + + L P +N++ Sbjct: 195 TGQRQGDLLRLPWSAYDGETVRLKQGKTGARVVIPVGAPLRAALDAAPRVSPVILVNSEG 254 Query: 262 QKMNATQF-SIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYG 312 + F S W KA + H +R + + A AG + E+ G Sbjct: 255 RPWTGDGFRSSWGKACRAAGIRGLTFHDLRGTAVSRLALAGCSEAEIATLTG 306 >gi|28868685|ref|NP_791304.1| integrase/recombinase XerD [Pseudomonas syringae pv. tomato str. DC3000] gi|28851924|gb|AAO54999.1| integrase/recombinase XerD [Pseudomonas syringae pv. tomato str. DC3000] gi|331016306|gb|EGH96362.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 298 Score = 45.8 bits (107), Expect = 0.010, Method: Compositional matrix adjust. Identities = 53/239 (22%), Positives = 101/239 (42%), Gaps = 23/239 (9%) Query: 112 RKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171 R++ H+ VE+ + P S +FL+ R +++ +R++ ++++P L ++ P+ Sbjct: 53 REVILDHLAWRVEN-AYKPRSTARFLSGARGFYRYLLREKLISVDPTLQIDMPQLGKPLP 111 Query: 172 RPWTKEDMQQFKSF--WSE--GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ 227 + ++ D++ + SE G + R E L GLR ++ ++ + ++ Sbjct: 112 KSLSEADVEALLAAPDLSEPIGERDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVM 171 Query: 228 KTGT-----------IITVE--LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFK 274 G+ I+ VE + +LL P + F + +M F K Sbjct: 172 GKGSKERLVPMGEEAIVWVERYMRGARDELLGGKP--SDVLFPSTRGDQMTRQTFWHRIK 229 Query: 275 AKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 +AT AG+ KS H +R AT + GA + G + + YT A R RL Sbjct: 230 HQATVAGIGKSLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-RARL 287 >gi|71725297|ref|YP_272272.1| phage integrase family site specific recombinase [Pseudomonas syringae pv. phaseolicola 1448A] gi|71558887|gb|AAZ38096.1| site-specific recombinase, phage integrase family [Pseudomonas syringae pv. phaseolicola 1448A] Length = 319 Score = 45.8 bits (107), Expect = 0.010, Method: Compositional matrix adjust. Identities = 52/242 (21%), Positives = 98/242 (40%), Gaps = 23/242 (9%) Query: 99 FDQIIRKSGDFDYRKITTKHI---RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAI 155 F I + D+R++T H+ R+ +E R ++ + L ++ LF + + VA Sbjct: 52 FSSFIGLASADDFRQVTRSHVLAWRADLEQRGLAGATIRRKLAALASLFDYLLENNAVAG 111 Query: 156 -NPCLSVERPKRKT-EGIRP-----WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSD 208 NP V+RP+ +T EG P K+ ++ + +G + R LLY GLR + Sbjct: 112 GNPVHGVKRPRIETNEGKTPALGDHQAKQLLEAPDTETLKGLRDRAILAVLLYHGLRREE 171 Query: 209 SCRAGVQHLQN--NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNA 266 + + LQ I ++ G+ I + L + P+ E + ++ A Sbjct: 172 AAQLHTHDLQERRGIKHLRVHGKGSKI---------RFLPLHPVAAERIYAYLEQDSERA 222 Query: 267 TQFSIWFKA-KATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 + F++ + T G +A+G+ + AG E + +G + Sbjct: 223 AKPGPLFRSLRGTTTGAAITANGIYSVVEAYAKKAGIVV-EHLGVHGLRATAATNALEHD 281 Query: 326 AD 327 AD Sbjct: 282 AD 283 >gi|237711564|ref|ZP_04542045.1| integrase [Bacteroides sp. 9_1_42FAA] gi|237725982|ref|ZP_04556463.1| integrase [Bacteroides sp. D4] gi|265752992|ref|ZP_06088561.1| tyrosine recombinase XerD [Bacteroides sp. 3_1_33FAA] gi|229435790|gb|EEO45867.1| integrase [Bacteroides dorei 5_1_36/D4] gi|229454259|gb|EEO59980.1| integrase [Bacteroides sp. 9_1_42FAA] gi|263236178|gb|EEZ21673.1| tyrosine recombinase XerD [Bacteroides sp. 3_1_33FAA] Length = 308 Score = 45.8 bits (107), Expect = 0.010, Method: Compositional matrix adjust. Identities = 49/232 (21%), Positives = 89/232 (38%), Gaps = 17/232 (7%) Query: 109 FDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168 D R + +G+ P S + L+ +R +++ + ++Y+ +P +E P+ Sbjct: 51 LDVRLENLEDFSAGLHDIGIHPRSQARILSGIRSFYRFLIMEDYLESDPTELLESPQTGF 110 Query: 169 EGIRPWTKEDMQQFKSFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224 + T E++ EG + R E L GLR S+ C + L I Sbjct: 111 KLPEVMTVEEIDLLIGSIDRGTKEGQRNRAILETLYSCGLRVSELCNLKLSELYFEEGFI 170 Query: 225 KTQKTGT-----------IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWF 273 K + G+ I + L L+ + P ++ FI+N + ++ Sbjct: 171 KVEGKGSKQRLVPISPRAIKEIRLYFTDRNLMKIKPGFEDFVFISNFGKNISRIMVFHII 230 Query: 274 KAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 K A + G+ K S H R AT + GA + G +++ E YT Sbjct: 231 KELAERIGLKKKISPHTFRHSFATHLLEGGANLRAIQCMLGHESIGTTEIYT 282 >gi|293373295|ref|ZP_06619653.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] gi|292631691|gb|EFF50311.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] Length = 383 Score = 45.8 bits (107), Expect = 0.010, Method: Compositional matrix adjust. Identities = 57/231 (24%), Positives = 104/231 (45%), Gaps = 19/231 (8%) Query: 117 KHIRSGVESRKHTPSSAI-QFLTSMRVLFKWAVRQEYVAINP--CLSVERPKRKTEGIRP 173 KH + KH +S I ++ + V A++ Y INP LS + ++ + R Sbjct: 152 KHDYVSYKGNKHLQNSTIVDYVRTFSVAINAAIKDGYKIINPFKLLSSDEKVKQPDSHRE 211 Query: 174 W-TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSD--SCRAGVQHLQNNIF--SIKTQK 228 + ++E++Q+ A+ F +SGLR SD + R +++ F + QK Sbjct: 212 YLSQEELQKLMITPCRRDDIGKAYLFACFSGLRISDIRALRWKNIIVEDGQFFAMLFMQK 271 Query: 229 TGTIITVELPDGFMKLLAMTPIGKE-TFFI-NNDKQKMNATQFSIWFKAKATKAGVNK-- 284 TG + + LPD M+++++ ++ FF+ +N + N + W +A AG+NK Sbjct: 272 TGKELKIPLPDKAMEIISIRGNDEDKVFFLPSNPTVEDNLKK---WAEA----AGINKHL 324 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335 + H R AT+ GA + + G V + Y K D+ ++ N Sbjct: 325 TFHTARHTYATLLLTLGADLYTVSKMLGHTNVATTQIYAKVVDKKKVDAVN 375 >gi|225025686|ref|ZP_03714878.1| hypothetical protein EIKCOROL_02588 [Eikenella corrodens ATCC 23834] gi|224941579|gb|EEG22788.1| hypothetical protein EIKCOROL_02588 [Eikenella corrodens ATCC 23834] Length = 344 Score = 45.8 bits (107), Expect = 0.011, Method: Compositional matrix adjust. Identities = 62/270 (22%), Positives = 106/270 (39%), Gaps = 15/270 (5%) Query: 10 FVTKERTR-HGKI-IYYFRKGH--GRRIRLPYPHESTFIPAYMSALTGST-PKREYINSP 64 + + RTR +GK +YY+ G GRR +P + S L + PK + P Sbjct: 15 MLARRRTRKNGKTTVYYYYDGREDGRRKEIPLGTDYIAAVQEWSKLEAAKLPKSARVTFP 74 Query: 65 RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124 L+ +IS +S + S A N+ +F D +I H+R ++ Sbjct: 75 VAAERYLQNIISH--RSRNTISSANNAVRKLSKFFGG--ENPAPLD--EIEPAHVRRYLD 128 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAI-NPCLSVERPKRKTEGIRPWTKEDMQQFK 183 RK TP A + + +F +A Q + + NPC +V++ +K R ED Sbjct: 129 WRKDTPGGANNEIGYLSAIFNYAREQGWTSKENPCRNVKKHSKKR---REVYIEDYLYQA 185 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243 + + Q R + +G R D H+ I I QKTG + E+ + Sbjct: 186 VYQAASQQMRDLMDIAYITGQRPVDIVGIHSSHIHEGILHISQQKTGAKLRFEISGKLKE 245 Query: 244 LLAMTPIGKETFFINNDKQKMNATQFSIWF 273 ++ F+N+ + ++ S F Sbjct: 246 IIDRIHQDNGYLFLNSHGKPLSRAALSRQF 275 >gi|306843261|ref|ZP_07475870.1| phage integrase family protein [Brucella sp. BO2] gi|306286527|gb|EFM58110.1| phage integrase family protein [Brucella sp. BO2] Length = 235 Score = 45.4 bits (106), Expect = 0.011, Method: Compositional matrix adjust. Identities = 33/105 (31%), Positives = 52/105 (49%), Gaps = 6/105 (5%) Query: 129 TPSSAIQFLTSMRVLFKWAVR-QEYVAINPCLSVERPKRKTEGIRPWTKEDMQ-QFKSFW 186 TP +A L ++R + +WA +E ++ +P V R+ EG +PWT E + K+F Sbjct: 8 TPGAANNLLDALRAMCRWASGPRELLSRDPTQGVAH-FRQGEGHKPWTPEQLAFADKNF- 65 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231 R A+ Y+G R SD R G + + FS+ +KTG Sbjct: 66 --TGMLRRAYVLARYTGQRISDVVRLGWTDIDDGGFSLPQKKTGV 108 >gi|289675311|ref|ZP_06496201.1| site-specific recombinase, phage integrase family protein [Pseudomonas syringae pv. syringae FF5] Length = 312 Score = 45.4 bits (106), Expect = 0.011, Method: Compositional matrix adjust. Identities = 45/208 (21%), Positives = 88/208 (42%), Gaps = 12/208 (5%) Query: 108 DFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167 +F+ R++ +H+ + TP+ A + ++ +R++F +A+ ++ V NPC + +R Sbjct: 78 EFEPRQVLPRHVAALKLHMSDTPNMANRVISFLRMVFAYALERQIVDSNPCTGI---RRH 134 Query: 168 TEGIRPWTKEDMQQFKSFWSEGSQ-PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226 E R D +F + + S+ + +E +G R SD + + + + + Sbjct: 135 AEKKRDRYISD-AEFAAICAASSEYMSVIWEMCFLTGQRISDVLSIKLSDISDVGIAFEQ 193 Query: 227 QKTGTIITVELPDGFMKLLAMTPI------GKETFFINNDKQKMNATQFSIWFKAKATKA 280 QKTG + V + LL G F + + ++ + F+A A Sbjct: 194 QKTGAKLIVGMSPDLKALLDRVNALPRKVRGATLFCARSGGKPVSYDTCKMGFRAACKAA 253 Query: 281 GV-NKSAHGVRKFSATISADAGATAHEL 307 GV + H +R S T + G A L Sbjct: 254 GVKGATIHDLRAKSLTDTDRQGNNAQML 281 >gi|317128823|ref|YP_004095105.1| integrase family protein [Bacillus cellulosilyticus DSM 2522] gi|315473771|gb|ADU30374.1| integrase family protein [Bacillus cellulosilyticus DSM 2522] Length = 280 Score = 45.4 bits (106), Expect = 0.011, Method: Compositional matrix adjust. Identities = 53/238 (22%), Positives = 101/238 (42%), Gaps = 22/238 (9%) Query: 102 IIRKSGDFDYRKITTKHIRSGV--ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCL 159 +IR GD + +T H+++ + E ++ PSS +R F+WA + ++ NP + Sbjct: 34 LIRFLGDMEAEDVTIFHLKNYLIEEQKRLKPSSFQHRCKFIRSFFRWAHEYDLLSKNPAI 93 Query: 160 SVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN 219 V+ PK +P +E ++ + S+ L EF+ +G+R + V +L Sbjct: 94 KVKMPKDHYRIPKPVNEETLELLR-IASKSPLEGLLVEFMYSAGVRVGE-----VYNLNK 147 Query: 220 NIFSI---------KTQKTGTIITVELPDGFMKLLAMTPIGKETFFI---NNDKQKMNAT 267 F+ K K + + + +++ + +E FI N ++M+ Sbjct: 148 KDFNFTNRSVYVFGKGDKEREVYFSKRAEIWIQRYFDSRQDEEECFICSKNKPYRRMSID 207 Query: 268 QFSIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 Q FK A KA V+++ H +R A+ + GA+ + G K + YT Sbjct: 208 QIRWHFKKLARKAEVDENVYPHRLRHSYASHLINRGASLEMVRDMLGHKRTETTRVYT 265 >gi|330872807|gb|EGH06956.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 298 Score = 45.4 bits (106), Expect = 0.011, Method: Compositional matrix adjust. Identities = 53/239 (22%), Positives = 101/239 (42%), Gaps = 23/239 (9%) Query: 112 RKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171 R++ H+ V++ + P S +FL+ R +++ +R++ +A++P L ++ P+ Sbjct: 53 REVILDHLAWRVDN-AYKPRSTARFLSGARGFYRYLLREKLIAVDPTLQIDMPQLGKPLP 111 Query: 172 RPWTKEDMQQFKSF--WSE--GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ 227 + ++ D++ + SE G + R E L GLR ++ ++ + ++ Sbjct: 112 KSLSEADVEALLAAPDLSEPIGERDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVM 171 Query: 228 KTGT-----------IITVE--LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFK 274 G+ I+ VE + +LL P + F + +M F K Sbjct: 172 GKGSKERLVPMGEEAIVWVERYMRGARDELLGGKP--SDVLFPSTRGDQMTRQTFWHRIK 229 Query: 275 AKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 +AT AG+ KS H +R AT + GA + G + + YT A R RL Sbjct: 230 HQATVAGIGKSLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-RARL 287 >gi|330964079|gb|EGH64339.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv. actinidiae str. M302091] Length = 298 Score = 45.4 bits (106), Expect = 0.011, Method: Compositional matrix adjust. Identities = 53/239 (22%), Positives = 102/239 (42%), Gaps = 23/239 (9%) Query: 112 RKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171 R++ H+ V++ + P S +FL+ R +++ +R++ +A++P L ++ P+ Sbjct: 53 REVILDHLAWRVDN-AYKPRSTARFLSGARGFYRYLLREKLIAVDPTLQIDMPQLGKPLP 111 Query: 172 RPWTKEDMQQFKSF--WSE--GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ 227 + ++ D++ + SE G + R E L GLR ++ ++ + ++ Sbjct: 112 KSLSEADVEALLAAPDLSEPIGERDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVM 171 Query: 228 KTGT-----------IITVE--LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFK 274 G+ I+ VE + +LL P + F + +M F K Sbjct: 172 GKGSKERLVPMGEEAIVWVERYMRGARDELLGGKP--SDVLFPSTRGDQMTRQTFWHRIK 229 Query: 275 AKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 +AT AG++KS H +R AT + GA + G + + YT A R RL Sbjct: 230 HQATVAGISKSLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-RARL 287 >gi|213969060|ref|ZP_03397199.1| integrase/recombinase XerD [Pseudomonas syringae pv. tomato T1] gi|301384045|ref|ZP_07232463.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv. tomato Max13] gi|302058751|ref|ZP_07250292.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv. tomato K40] gi|302131712|ref|ZP_07257702.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213926058|gb|EEB59614.1| integrase/recombinase XerD [Pseudomonas syringae pv. tomato T1] Length = 298 Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust. Identities = 53/239 (22%), Positives = 101/239 (42%), Gaps = 23/239 (9%) Query: 112 RKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171 R++ H+ VE+ + P S +FL+ R +++ +R++ ++++P L ++ P+ Sbjct: 53 REVILDHLAWRVEN-AYKPRSTARFLSGARGFYRYLLREKLISVDPTLQIDMPQLGKPLP 111 Query: 172 RPWTKEDMQQFKSF--WSE--GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ 227 + ++ D++ + SE G + R E L GLR ++ ++ + ++ Sbjct: 112 KSLSEADVEALLAAPDLSEPIGERDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVM 171 Query: 228 KTGT-----------IITVE--LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFK 274 G+ I+ VE + +LL P + F + +M F K Sbjct: 172 GKGSKERLVPMGEEAIVWVERYMRGARDELLGGKP--SDVLFPSTRGDQMTRQTFWHRIK 229 Query: 275 AKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 +AT AG+ KS H +R AT + GA + G + + YT A R RL Sbjct: 230 HQATVAGIGKSLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-RARL 287 >gi|212695398|ref|ZP_03303526.1| hypothetical protein BACDOR_04947 [Bacteroides dorei DSM 17855] gi|212662033|gb|EEB22607.1| hypothetical protein BACDOR_04947 [Bacteroides dorei DSM 17855] Length = 308 Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust. Identities = 49/232 (21%), Positives = 89/232 (38%), Gaps = 17/232 (7%) Query: 109 FDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168 D R + +G+ P S + L+ +R +++ + ++Y+ +P +E P+ Sbjct: 51 LDVRLENLEDFSAGLHDIGIHPRSQARILSGIRSFYRFLIMEDYLESDPTELLESPQTGF 110 Query: 169 EGIRPWTKEDMQQFKSFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224 + T E++ EG + R E L GLR S+ C + L I Sbjct: 111 KLPEVMTVEEIDLLIGSIDRGTKEGQRNRAILETLYSCGLRVSELCNLKLSELYFEEGFI 170 Query: 225 KTQKTGT-----------IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWF 273 K + G+ I + L L+ + P ++ FI+N + ++ Sbjct: 171 KVEGKGSKQRLVPISPRAIKEIRLYFTDRNLMKIKPGFEDFVFISNFGKNISRIMVFHII 230 Query: 274 KAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 K A + G+ K S H R AT + GA + G +++ E YT Sbjct: 231 KELAERIGLKKKISPHTFRHSFATHLLEGGANLRAIQCMLGHESIGTTEIYT 282 >gi|218442353|ref|YP_002380677.1| integrase family protein [Cyanothece sp. PCC 7424] gi|218175457|gb|ACK74184.1| integrase family protein [Cyanothece sp. PCC 7424] Length = 273 Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust. Identities = 52/237 (21%), Positives = 98/237 (41%), Gaps = 12/237 (5%) Query: 93 ISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQ 150 IS++ + Q + G R +T + V T P + + +++ LF +A R Sbjct: 27 ISYQCHIKQFLEFVGK-PLRDVTLDDLSLWVNRLNLTYQPVTVANKILTVKSLFSFACRV 85 Query: 151 EYVAINPCLSVERPKRK-TEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDS 209 Y+ +N ++ PK K T R K ++++ + + + + + GLR S+ Sbjct: 86 GYLTVNVGSFIKSPKLKDTLAERILEKAEVKRLINA-TPNERDSVLLSLMYGCGLRVSEV 144 Query: 210 CRAGVQHLQNNIFSI--KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNAT 267 C L+N ++ K KT +I +P L P E F++ ++ T Sbjct: 145 CGLNWSDLRNGKATVFGKGAKTRVVI---IPPNLWDRLMQLPRDGEAVFMSRRGNRLERT 201 Query: 268 QFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 K K+GV++ S+H +R A+ + +AG L + G ++ E Y Sbjct: 202 YIHKMIKECCHKSGVSEKASSHWLRHSHASHAVEAGCNLRLLQQSLGHSKLETTEKY 258 >gi|119505219|ref|ZP_01627294.1| site-specific tyrosine recombinase XerD [marine gamma proteobacterium HTCC2080] gi|119458910|gb|EAW40010.1| site-specific tyrosine recombinase XerD [marine gamma proteobacterium HTCC2080] Length = 282 Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust. Identities = 50/239 (20%), Positives = 98/239 (41%), Gaps = 65/239 (27%) Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 +P S+ +FL++ R ++WA+R+ ++ +P L +E PK+ + ++ D+++ Sbjct: 53 SPRSSARFLSAARSFYRWALREGHIVEDPTLRIESPKQGRPLPKSLSETDVERLLG---- 108 Query: 189 GSQPRLAFEF-------LLYS-GLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240 LA EF +LY+ GLR S+ + ++ ++ G L G Sbjct: 109 APDLELALEFRDRTMLEMLYACGLRVSE------------LVGLQVEQVG------LNQG 150 Query: 241 FMKLLA------MTPIGKE-----------------------TFFINNDKQKMNATQFSI 271 +++L + P+G+E F +N ++M T+ + Sbjct: 151 IVRVLGKGGKERLVPMGEEALDWLIQYMRGPRIELLKGQSSNVLFPSNRSREM--TRQTF 208 Query: 272 WFKAK--ATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 W++ K +AG+ S H +R AT + GA + G + + YT A Sbjct: 209 WYRIKLYGERAGIQSHLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA 267 >gi|225852955|ref|YP_002733188.1| phage integrase [Brucella melitensis ATCC 23457] gi|256263566|ref|ZP_05466098.1| phage integrase [Brucella melitensis bv. 2 str. 63/9] gi|225641320|gb|ACO01234.1| phage integrase [Brucella melitensis ATCC 23457] gi|263093614|gb|EEZ17619.1| phage integrase [Brucella melitensis bv. 2 str. 63/9] Length = 164 Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust. Identities = 33/137 (24%), Positives = 60/137 (43%), Gaps = 2/137 (1%) Query: 205 RCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM 264 RCS + + + F ++ KTG + + + ++L TP ET + + Sbjct: 21 RCSKTVFLDGEAKSVDGFELRQGKTGKRLFLPITPILSEVLEATPRQGETVLVTAYGEPF 80 Query: 265 NATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 + + A + K + HG+RK I A+ GA+ ++M T+G + AE Y Sbjct: 81 SPKSLTGRMADWTASAKLPKGFTLHGLRKTLGKILAEGGASTRQIMDTFGHDDIAHAELY 140 Query: 323 TKGADRIRLGIKNSRRI 339 T+ A++ RL R+ Sbjct: 141 TREAEQARLATDGMSRV 157 >gi|291615189|ref|YP_003525346.1| tyrosine recombinase XerD [Sideroxydans lithotrophicus ES-1] gi|291585301|gb|ADE12959.1| tyrosine recombinase XerD [Sideroxydans lithotrophicus ES-1] Length = 303 Score = 45.4 bits (106), Expect = 0.013, Method: Compositional matrix adjust. Identities = 51/226 (22%), Positives = 91/226 (40%), Gaps = 20/226 (8%) Query: 118 HIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177 H+ SG +++ + S AI +S++ LF++ +RQ + +P L + PK + T+E Sbjct: 66 HLVSGEKAKATSTSRAI---SSLKRLFRYLLRQNKITADPTLQIATPKLPRSLPKSLTEE 122 Query: 178 DMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI- 232 D++ + G + R E L SGLR S+ V + ++ + G+ Sbjct: 123 DVELLLNAPDVDTPLGMRDRTMLEVLYASGLRVSELVGLSVAQVSLDMGVTRVMGKGSKE 182 Query: 233 ----ITVELPDGFMKLLA------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282 + E D + LA + + F+ + M F K A + G+ Sbjct: 183 RLVPLGEEALDWVKRYLAEARPALLAGQVADALFVTQRGEGMTRQMFWYLIKKHAKEGGL 242 Query: 283 NK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 +K S H +R AT + GA + G + + YT A Sbjct: 243 HKPLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDISTTQIYTHVA 288 >gi|297584490|ref|YP_003700270.1| tyrosine recombinase XerD [Bacillus selenitireducens MLS10] gi|297142947|gb|ADH99704.1| tyrosine recombinase XerD [Bacillus selenitireducens MLS10] Length = 296 Score = 45.4 bits (106), Expect = 0.013, Method: Compositional matrix adjust. Identities = 54/241 (22%), Positives = 109/241 (45%), Gaps = 28/241 (11%) Query: 107 GDFDYRKITTKHIRSGVE--SRKHTPSSAI-QFLTSMRVLFKWAVRQEYVAINPCLSVER 163 G F ++ + KH+ ++ ++ SS+I + L++++ L + + ++ + NP + +ER Sbjct: 42 GIFSWKDVNKKHVLHYLQWMNQSGKASSSISRTLSAIKSLHVFLMLEKEMDENPAVHIER 101 Query: 164 PKRKTEGIRPWTKEDMQQFKSFWS--EGSQP----RLAFEFLLYS-GLRCSDSCRAGVQH 216 P++ I P T + + ++ +S EG++P +A +LYS G+R S+ C ++ Sbjct: 102 PRKP--AILPKTLA-ISEVEALFSAAEGNRPIDIRTVAMLEVLYSTGMRVSELCALELKD 158 Query: 217 LQNNIFSIKTQKTGTIITVELPDG------------FMKLLAMTPIGKETFFINNDKQKM 264 L + +K G + +P G + + M F+N+ ++ Sbjct: 159 LNLEMGFVKCTGKGNTERI-IPLGEFATEAIRIYLDHARPVMMKDKEHHDLFVNHHGHRI 217 Query: 265 NATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 + F ++ ATKAG+ K S H +R AT + GA + G + + Y Sbjct: 218 SRQGFWKLIRSLATKAGIQKEISPHTLRHSFATHLLENGADLRSVQEMLGHSDISTTQIY 277 Query: 323 T 323 T Sbjct: 278 T 278 >gi|283458210|ref|YP_003362828.1| integrase [Rothia mucilaginosa DY-18] gi|283134243|dbj|BAI65008.1| integrase [Rothia mucilaginosa DY-18] Length = 422 Score = 45.4 bits (106), Expect = 0.013, Method: Compositional matrix adjust. Identities = 66/278 (23%), Positives = 105/278 (37%), Gaps = 38/278 (13%) Query: 79 RKSAHWGSLAVNSRIS-FESYFDQIIRKSGDFDYRKITTKHIRSGVES---RKHTPSSAI 134 R H + S IS E +F + R+ G I IR + S R+ S+ + Sbjct: 132 RYEKHRSEETIRSYISDLEGFFGYMARR-GVRHLDSIDASLIREWLGSLHLRQAARSTVV 190 Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE--GSQP 192 + +++R F WA +E V NP + PKR++ ++E M Q + E P Sbjct: 191 RRGSTLRTFFTWAQEEELVHANPTRGMRTPKRESHLPPVLSREQMNQLLTTLQERRAQDP 250 Query: 193 RLA--------FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244 R A E L SG+R S+ +Q + +++ G V +P G L Sbjct: 251 RDARLLRLEAVVEVLYASGMRISELTGLDLQSVDRANKTVRVLGKGNKERV-VPLGTPAL 309 Query: 245 LAMT-----------PIGKE---TFFINNDKQKMNATQF-----SIWFKAKATKAGVNKS 285 A+ P G + FI + NA Q + + T+A Sbjct: 310 KALNRWVSYGRPQWIPEGSQGVTALFIGPRGGRANARQIREDLTRLLRTVENTQA---SG 366 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 AH +R +AT D GA + G ++ + YT Sbjct: 367 AHVLRHSAATHLVDGGADIRSVQELLGHSSLATTQIYT 404 >gi|260577125|ref|ZP_05845103.1| integrase family protein [Rhodobacter sp. SW2] gi|259020703|gb|EEW24021.1| integrase family protein [Rhodobacter sp. SW2] Length = 358 Score = 45.4 bits (106), Expect = 0.013, Method: Compositional matrix adjust. Identities = 57/228 (25%), Positives = 94/228 (41%), Gaps = 32/228 (14%) Query: 19 GKIIYYFRKG-----HGRRIRLP-YPHESTFIPAYMSALT--GSTPKREYINSPRKKPTT 70 G+ +Y+++G G RIRLP P F A A G TP T Sbjct: 17 GRDYFYYQEGRGTPHQGERIRLPDKPQTPEFWNAVRQAQGTFGPTPT-----------DT 65 Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIRSGVES- 125 + LI Y + W +L + + + ++ S GD R + KH+ + + Sbjct: 66 VGALIDAYEGA--WPTLQRKLSKGTQEQYRRNLKPSRKAWGDLPARDLRPKHVDALIRKI 123 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 P +A L +++ L +WA + +A +P V R K G PWT+ + + Sbjct: 124 GAERPGAANNVLDALKALCRWANGPVDLLAHDPTKGVHR-FEKGAGHEPWTEAQLAFAEQ 182 Query: 185 FWSEGSQPRLAFEFL-LYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231 ++ P + FL Y+G R SD R + + FS++ +KTG Sbjct: 183 TFT---GPLRRYYFLSRYTGQRISDVVRLNPGDVDDGGFSLRQKKTGV 227 >gi|297621664|ref|YP_003709801.1| Site-specific tyrosine recombinase XerC [Waddlia chondrophila WSU 86-1044] gi|297376965|gb|ADI38795.1| Site-specific tyrosine recombinase XerC [Waddlia chondrophila WSU 86-1044] Length = 301 Score = 45.4 bits (106), Expect = 0.014, Method: Compositional matrix adjust. Identities = 31/121 (25%), Positives = 55/121 (45%), Gaps = 7/121 (5%) Query: 95 FESYFDQIIRKSGDFDYRKITTKHIR---SGVESRKHTPSSAIQFLTSMRVLFKWAVRQE 151 F+ + +Q + DF +I + IR + + S+ + + ++ L+S+R FKWA + Sbjct: 36 FKQHLEQEWQSDEDFALNRIERRQIRGFLAMMNSKGASKRTILRRLSSLRTFFKWAFANQ 95 Query: 152 YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRLAFEFLLYSGLRCS 207 + NP +E PK + P + ++ S GS+ R E SGLR S Sbjct: 96 LITSNPIEEIESPKLEKTIPTPLSYTQVEHLFSLPEIETLLGSRDRCMMELFYSSGLRVS 155 Query: 208 D 208 + Sbjct: 156 E 156 >gi|126464099|ref|YP_001045212.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17029] gi|126105910|gb|ABN78440.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17029] Length = 360 Score = 45.4 bits (106), Expect = 0.014, Method: Compositional matrix adjust. Identities = 67/293 (22%), Positives = 110/293 (37%), Gaps = 36/293 (12%) Query: 62 NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121 + P TL+ LI+ Y+K+ + LA +R + + QI GD + + +R Sbjct: 50 DRPAHHDGTLQALITAYQKTPAFTDLAEATRKGYIRHIRQIEADFGDMPVQALADPRVRG 109 Query: 122 GV------ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175 ++K S+ F R+L WA + + +NPC E+P R G R Sbjct: 110 EFLDWRDRLAQKSKRSADYAFSVLARIL-SWAHDRRKIPVNPC---EKPGRLYTGSRA-- 163 Query: 176 KEDMQQFKSFWSEGSQP----------RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK 225 S W+E RL F +++G R +D + ++ Sbjct: 164 -------DSIWTEAQIAAFLAAAPRPVRLPFLLAIWTGQRQADILQLTWTAYDGKAIRLR 216 Query: 226 TQKTGTIITVELPDGFMKLLAMTPIGKETFFI--NNDKQKMNATQFSIWF-KAKATKAGV 282 KTG + + + + + + T I + Q + F F KA+A Sbjct: 217 QSKTGRHMLIPVAQPLREAMEEARARRRTLTICETSRGQAWTSDGFKTSFGKAQAAARIE 276 Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK---GADRIRLG 332 + H +R + T A AG + E+ A G D +K G DR RLG Sbjct: 277 GVTFHDLRGTAVTFLALAGCSVPEIAALTGHSLKDAEGILSKHYLGRDR-RLG 328 >gi|119477803|ref|ZP_01617926.1| integrase, phage related protein [marine gamma proteobacterium HTCC2143] gi|119448964|gb|EAW30205.1| integrase, phage related protein [marine gamma proteobacterium HTCC2143] Length = 325 Score = 45.1 bits (105), Expect = 0.014, Method: Compositional matrix adjust. Identities = 24/72 (33%), Positives = 42/72 (58%), Gaps = 5/72 (6%) Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + P SA + L +R +F WAV +E V INPC V RP ++ + R ++ ++ K+ W Sbjct: 157 QRAPISANRALEIIRKMFNWAVEREIVEINPCWQVSRPSQENKRERALSESEL---KALW 213 Query: 187 S--EGSQPRLAF 196 + E ++ +LA+ Sbjct: 214 TILESARCKLAY 225 >gi|218778262|ref|YP_002429580.1| tyrosine recombinase XerC [Desulfatibacillum alkenivorans AK-01] gi|218759646|gb|ACL02112.1| tyrosine recombinase XerC [Desulfatibacillum alkenivorans AK-01] Length = 315 Score = 45.1 bits (105), Expect = 0.014, Method: Compositional matrix adjust. Identities = 60/237 (25%), Positives = 97/237 (40%), Gaps = 27/237 (11%) Query: 110 DYRKITTKHIRS--GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR- 166 D ++ IR G +K+ S+ + L+S+R +++ ++ VA+NP SV PKR Sbjct: 62 DVERVDNLAIRGYLGFLHKKNEKSTMARKLSSLRSFYRFLEKRGRVAVNPAQSVVTPKRK 121 Query: 167 KTEGIRPWTKEDMQQFKSFWSE---GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS 223 KT E S + G++ R FE L +G+R S+ AG+ + N FS Sbjct: 122 KTVAAHLTVDEAFALLDSILDDSLAGARDRAMFECLYSTGIRVSEL--AGLNMGRVN-FS 178 Query: 224 IKTQKT------GTIITV-----ELPDGFMKLLAM----TPIGKETFFINNDKQKMNATQ 268 KT + I+ V E + LA+ P E F+N + ++ Sbjct: 179 GKTLRVLGKGDKERIVPVGAKALEHIKAYRDRLAVEGPKNP-DPEAVFLNKNGGRLTTRS 237 Query: 269 FSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 + G+N+ S HG+R AT D GA + G ++ YT Sbjct: 238 IRRILEKIVRDMGLNRPLSPHGLRHTFATHMLDNGADLRSVQELLGHASISTTGRYT 294 >gi|315122638|ref|YP_004063127.1| hypothetical protein CKC_04450 [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313496040|gb|ADR52639.1| hypothetical protein CKC_04450 [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 63 Score = 45.1 bits (105), Expect = 0.015, Method: Composition-based stats. Identities = 21/42 (50%), Positives = 28/42 (66%) Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 AHG+RK ATI A++GA+++ELMA YGW AE G + Sbjct: 22 AHGLRKAGATILANSGASSYELMAMYGWSKSTMAEKMRIGKN 63 >gi|284008636|emb|CBA75253.1| phage integrase [Arsenophonus nasoniae] Length = 226 Score = 45.1 bits (105), Expect = 0.015, Method: Compositional matrix adjust. Identities = 46/173 (26%), Positives = 74/173 (42%), Gaps = 9/173 (5%) Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 SSA F +++ +F A + NP L + PK K + R + +S E Sbjct: 16 SSASIFRITLKDIFNEAYCLGIINNNPVLPTKSPKVKVQRTRLSLDDFNLILESIDDEAH 75 Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF--MKLLAMT 248 +A + L +G R SD + + L ++ I QKTG+ I + L +KL A+ Sbjct: 76 WLTIAMKLALVTGQRVSDISKMKYEDLHDDKLWIIQQKTGSKIAIPLTVEIIGIKLSAII 135 Query: 249 PIGKET--FFINNDKQKMNATQFSIWF-----KAKATKAGVNKSAHGVRKFSA 294 I + + IN+ +K++ + S F K T G S H +R SA Sbjct: 136 KINENDSEYIINDAGKKVSIEKISKGFAKLRDKTNLTWEGTPPSFHEIRSLSA 188 >gi|163798313|ref|ZP_02192240.1| putative integrase [alpha proteobacterium BAL199] gi|159176400|gb|EDP60988.1| putative integrase [alpha proteobacterium BAL199] Length = 285 Score = 45.1 bits (105), Expect = 0.015, Method: Compositional matrix adjust. Identities = 59/293 (20%), Positives = 106/293 (36%), Gaps = 36/293 (12%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE--SRKHTPS 131 ++ YR+S+ + LA ++ + D + + G D I+T + + ++ + K Sbjct: 1 MVDAYRRSSAFTKLAPRTKRDYHQVLDYLRKPLGAADVDGISTPELATLIDRIAEKRNWR 60 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSV---ERPKRKTEGIRPWTKEDMQQFK----- 183 A L + +F + + +NP V RP+ RPWT +++ Sbjct: 61 FANYCLAVISRVFSIGILRGKAKVNPATGVPKLTRPREAPAANRPWTDHEIEVVLAAAPA 120 Query: 184 -----------SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN---IFSIKTQKT 229 + EG L G R + + R G H + + + + Sbjct: 121 GVALAVGLGAYAGLREGDAIALPMSAYSKVGRRAAITFRPGKTHRADEDPLVLPVHPRLV 180 Query: 230 GTIITVELPDGFMKLLAMT--PIGKETFFINNDKQKMNATQFSIWFKAKAT-KAGVNKSA 286 I + D + +L M P + F F + + +A K G + Sbjct: 181 QLIDNRKAGDSTVMVLGMRGRPYTSDGF---------RTMLFRVIAQLEAAGKVGEGLTF 231 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339 HG+R AT +D GA + GW + A+ YTK DR + R+I Sbjct: 232 HGLRHTVATKLSDLGADNETIADVLGWSSTAMAKRYTKTRDRTKRAAAGLRQI 284 >gi|260427159|ref|ZP_05781138.1| phage integrase family protein [Citreicella sp. SE45] gi|260421651|gb|EEX14902.1| phage integrase family protein [Citreicella sp. SE45] Length = 296 Score = 45.1 bits (105), Expect = 0.016, Method: Compositional matrix adjust. Identities = 52/253 (20%), Positives = 98/253 (38%), Gaps = 19/253 (7%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133 +I+E +++ W + + R E + K G D + KH+ +++ H A Sbjct: 15 IIAELKQTEKWANFSPRYRKDLEPILLYLDEKIGSKDVSLLRPKHVYEAMDANAHRVRFA 74 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVER---PKRKTEGIRPWTKEDMQQFKSFWSEGS 190 ++ +L + A R+ + NP +ER PK + + W + +Q+ + EG+ Sbjct: 75 NYIPVAITLLARLARRKGWRTDNPAEGIERLAVPKERQKPHYAWPDDAVQKMR---EEGA 131 Query: 191 Q-PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP---------DG 240 + P+L E + S R D + KTGT +++LP D Sbjct: 132 ELPKLILEIGIGSVQRPGDWVGFTWGDYDGESLRLVQNKTGT--SLKLPCTEELKQKLDA 189 Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISAD 299 L P+ + D M+ + + + + G++K H +R A Sbjct: 190 AKASLKAPPLPERPILARADGTSMSYYMLARIMREERARLGLSKYDLHALRYRGVKELAY 249 Query: 300 AGATAHELMATYG 312 AG T E+ + G Sbjct: 250 AGCTDDEIASYSG 262 >gi|329929830|ref|ZP_08283506.1| phage integrase, N-terminal SAM domain protein [Paenibacillus sp. HGF5] gi|328935808|gb|EGG32269.1| phage integrase, N-terminal SAM domain protein [Paenibacillus sp. HGF5] Length = 294 Score = 45.1 bits (105), Expect = 0.016, Method: Compositional matrix adjust. Identities = 38/191 (19%), Positives = 83/191 (43%), Gaps = 17/191 (8%) Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF----KSFW 186 SS ++ S+R F++ VRQ + +P ++ PK + + + T E + + S Sbjct: 68 SSLLRCTASLRSFFQYLVRQAVIVQDPTQLLDNPKPERKPPKSLTVEQVDKLLSAPDSGT 127 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246 +G++ + E L SG++ S+ V +Q + ++ +G G ++L Sbjct: 128 PQGARDKAMLELLYASGIKVSELVNLSVHDIQLEMRFLRCAVSG---------GKERILP 178 Query: 247 MTPIGKET--FFINN--DKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGA 302 +TPI E+ ++ + DK +A + +++ + T+ ++K+ D Sbjct: 179 ITPIAAESVALYVRDMRDKLMRDAGEDALFLNSLGTRLTRQGFWKIIKKYGKLADIDEDI 238 Query: 303 TAHELMATYGW 313 T H L ++ Sbjct: 239 TPHTLRHSFAM 249 >gi|270291303|ref|ZP_06197525.1| tyrosine recombinase XerD [Pediococcus acidilactici 7_4] gi|270280149|gb|EFA25985.1| tyrosine recombinase XerD [Pediococcus acidilactici 7_4] Length = 295 Score = 45.1 bits (105), Expect = 0.017, Method: Compositional matrix adjust. Identities = 45/212 (21%), Positives = 88/212 (41%), Gaps = 21/212 (9%) Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-- 188 SS+I ++S+R FK+ + + + NP +++ PKR T E++++ Sbjct: 68 SSSIHTISSLRKFFKYLLLNDQIQTNPMANIDPPKRAQHLPSVLTTEEVERLLKVPDTSK 127 Query: 189 --GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT--------IITVELP 238 G + R E + +GLR S+ + L + I+T G + ++ Sbjct: 128 PLGIRDRAILEVMYATGLRVSELIALNLNELHLEMGLIETVGKGNKQRIIPIGDVAIQWL 187 Query: 239 DGFMKLLAMTPIGKETF---FINNDKQKMNATQFSIW--FKAKATKAGVNKSA--HGVRK 291 + ++ +G + + F+N + T+ +W KA+ KAG+ K+ H +R Sbjct: 188 ERYINGPRRALLGAKRYNEIFLNQHGHPL--TRQGVWKNLKAQVQKAGIKKNITPHTLRH 245 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYT 323 AT + GA + G + + YT Sbjct: 246 SFATHLLENGADLRIVQELLGHADISTTQIYT 277 >gi|161619421|ref|YP_001593308.1| phage integrase [Brucella canis ATCC 23365] gi|254704727|ref|ZP_05166555.1| phage integrase [Brucella suis bv. 3 str. 686] gi|260566026|ref|ZP_05836496.1| phage integrase [Brucella suis bv. 4 str. 40] gi|261755423|ref|ZP_05999132.1| integrase/recombinase [Brucella suis bv. 3 str. 686] gi|161336232|gb|ABX62537.1| phage integrase [Brucella canis ATCC 23365] gi|260155544|gb|EEW90624.1| phage integrase [Brucella suis bv. 4 str. 40] gi|261745176|gb|EEY33102.1| integrase/recombinase [Brucella suis bv. 3 str. 686] Length = 164 Score = 45.1 bits (105), Expect = 0.017, Method: Compositional matrix adjust. Identities = 34/139 (24%), Positives = 61/139 (43%), Gaps = 6/139 (4%) Query: 205 RCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ-- 262 RCS + + + F ++ KTG + + + ++L TP ET + + Sbjct: 21 RCSKTVFLDGEAKSVDGFELRQGKTGKRLLLPITPILSEVLEATPRQGETVLVTAYGEPF 80 Query: 263 --KMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320 K + + W + G + HG+RK I A+ GA+ ++M T G + +AE Sbjct: 81 SPKSLTGRMADWTPSAKLPKGF--TLHGLRKTLGKILAEGGASTRQIMDTLGHDDIARAE 138 Query: 321 TYTKGADRIRLGIKNSRRI 339 YT+ A++ RL R+ Sbjct: 139 LYTREAEQARLATDGMSRV 157 >gi|325268524|ref|ZP_08135154.1| integrase/recombinase XerD [Prevotella multiformis DSM 16608] gi|324989052|gb|EGC21005.1| integrase/recombinase XerD [Prevotella multiformis DSM 16608] Length = 310 Score = 45.1 bits (105), Expect = 0.017, Method: Compositional matrix adjust. Identities = 48/210 (22%), Positives = 86/210 (40%), Gaps = 19/210 (9%) Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT---EGIRPWTKEDMQQFKSF--W 186 S + L+ +R +++ V Y+ +P +E PK+ E + + ++Q W Sbjct: 74 SLARILSGVRQFYRFLVLDGYMEADPTELLESPKQPDHLPEVLSTAEVDLLEQAVDLTKW 133 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT---IITV------EL 237 EG + R E L GLR S+ + L ++ G+ ++ + EL Sbjct: 134 -EGHRNRAIIEVLFSCGLRVSELTHLKLSDLYREEQYVRVMGKGSKERLVPISPRALDEL 192 Query: 238 PDGFM--KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFS 293 F ++ + P ++ F+N + T I K A +AG+ K S H +R Sbjct: 193 DCWFADRNVMKIKPGEEDYVFLNRRGHHLTRTMILIMIKRYAAEAGIRKTISPHTLRHSF 252 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYT 323 AT + GA + A G +++ E YT Sbjct: 253 ATSLLEGGADLRAIQAMLGHESIGTTEIYT 282 >gi|154491730|ref|ZP_02031356.1| hypothetical protein PARMER_01346 [Parabacteroides merdae ATCC 43184] gi|154087971|gb|EDN87016.1| hypothetical protein PARMER_01346 [Parabacteroides merdae ATCC 43184] Length = 302 Score = 45.1 bits (105), Expect = 0.017, Method: Compositional matrix adjust. Identities = 42/144 (29%), Positives = 74/144 (51%), Gaps = 21/144 (14%) Query: 76 SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES---RKHTPSS 132 SEY +A++ L FE + + +K G F ++ T +R+ + S K +P S Sbjct: 19 SEYTINAYFKDLQ-----QFEDFVKE--KKEGIFVPEEVDTDIVRNWIISLLDNKISPVS 71 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE-DMQQF-------KS 184 + L+S++ FK+ ++Q +V++NP V PK K + + + KE DM++ + Sbjct: 72 VNRKLSSLKSFFKFLMKQGFVSVNPLRFVTGPKTK-KPLPTFVKEKDMEELLDGDGFDED 130 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSD 208 F EG + RL E L +G+R S+ Sbjct: 131 F--EGVRDRLVLEMLYDTGVRRSE 152 >gi|238790806|ref|ZP_04634564.1| Phage integrase [Yersinia frederiksenii ATCC 33641] gi|238721121|gb|EEQ12803.1| Phage integrase [Yersinia frederiksenii ATCC 33641] Length = 336 Score = 45.1 bits (105), Expect = 0.018, Method: Compositional matrix adjust. Identities = 83/339 (24%), Positives = 140/339 (41%), Gaps = 47/339 (13%) Query: 7 LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66 +PP RT G+ + F+ G IRL S PA + A E + + ++ Sbjct: 13 MPP-----RTCRGRSAFEFKPKLGGTIRLCGFDAS---PAQVWAAY------EALINDKQ 58 Query: 67 KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS----- 121 WL+S + SA + LAV ++ + Y +++ G+ I +HIR Sbjct: 59 NENVFNWLVSRFFLSADFIELAVETQKDYRKYAVKVLSVFGEVHPDAIKPEHIRKYMDKR 118 Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 GV+SR T ++ + TS +F+WA + V +NPC V++ K +T R T ++ Sbjct: 119 GVKSR--TQANREKAFTSR--VFRWAYERGMVKMNPCKGVKQFK-ETSRTRYITNKEYDA 173 Query: 182 FKSFWSEGSQP--RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELP 238 + S P ++A E R +D L ++ I+ KTG + I P Sbjct: 174 L----YQVSPPVVQVAMELAYLCCARQADILGMKKNQLIDDGILIQQSKTGISQIKAWGP 229 Query: 239 --DGFMKLLAMTPI--GKETFFINNDKQKMNATQ---FSIWFKAKAT------KAGVNKS 285 +KL + P+ G + F+ + + T+ S W KAKA + N + Sbjct: 230 RLTAVIKLASQLPLNRGMSSIFVIHQQSGARYTRDGFNSRWLKAKAEAKEKYPELEFNFT 289 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H ++ A +D + +E A G K Q Y + Sbjct: 290 FHDLK---AKGISDLSGSLYEKQAISGHKNAAQTARYDR 325 >gi|331673529|ref|ZP_08374292.1| putative integrase for prophage [Escherichia coli TA280] gi|331068802|gb|EGI40194.1| putative integrase for prophage [Escherichia coli TA280] Length = 341 Score = 44.7 bits (104), Expect = 0.019, Method: Compositional matrix adjust. Identities = 46/197 (23%), Positives = 80/197 (40%), Gaps = 6/197 (3%) Query: 36 PYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISF 95 P ES + A L K E + R + T L ++ SA++ L+ ++ + Sbjct: 28 PTSRESVTLTAIKDGLAALWKKYEETVNNRDRAMTFGRLWEKFLASAYYSDLSPRTQKDY 87 Query: 96 ESYFDQIIRKSGDFDYRKITTKHIRSGVESR-KHTPSSAIQFLTSMRVLFKWAVRQEYVA 154 + +++ G I +HIR ++ R + + + A +SM ++ W + YV Sbjct: 88 LQHQKKLLAVFGKVPADSIKPEHIRRYMDKRGEQSKTQANHEKSSMSRVYSWGYERGYVK 147 Query: 155 INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR-LAFEFLLYSGLRCSDSCRAG 213 NPC V + K K KE +++ S S P +A E R SD Sbjct: 148 ANPCAGVSKFKAKNRERYVTDKE----YQAVLSVASPPVFIAMEIAYLCAARISDVLSLK 203 Query: 214 VQHLQNNIFSIKTQKTG 230 + + N+ I+ KTG Sbjct: 204 WEQIGNDGIFIQQGKTG 220 >gi|317055389|ref|YP_004103856.1| integrase family protein [Ruminococcus albus 7] gi|315447658|gb|ADU21222.1| integrase family protein [Ruminococcus albus 7] Length = 393 Score = 44.7 bits (104), Expect = 0.019, Method: Compositional matrix adjust. Identities = 37/135 (27%), Positives = 63/135 (46%), Gaps = 18/135 (13%) Query: 107 GDFDYRKITTKHIRSGVES-----------RKHTPSSAIQFLTSMRVLFKWAVRQEYVAI 155 G KIT +H++ V S + P + L+ + +F +AVR + V+ Sbjct: 105 GHLRIDKITARHLQGFVNSLAKEGANEKTGKPLAPKTIRHNLSFISDVFSYAVRMDLVSD 164 Query: 156 NPCLSVERPKRKTEGIRPWTKEDMQQ-FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGV 214 NPC V PK + + +++E++ Q + E ++ R F + YSG R S+ G+ Sbjct: 165 NPCRKVTIPKGEVKEKPIYSQEEIAQLLTAINGEDTKYRAFFYLIAYSGFRRSEML--GL 222 Query: 215 Q----HLQNNIFSIK 225 + +NNI SIK Sbjct: 223 EWKDIDFENNIISIK 237 >gi|270308039|ref|YP_003330097.1| site-specific recombinase [Dehalococcoides sp. VS] gi|270153931|gb|ACZ61769.1| site-specific recombinase [Dehalococcoides sp. VS] Length = 307 Score = 44.7 bits (104), Expect = 0.019, Method: Compositional matrix adjust. Identities = 44/204 (21%), Positives = 84/204 (41%), Gaps = 17/204 (8%) Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF----KSFWSEGSQP 192 L+++R +++ +R+ + NP L+ P+ T ++ + S +G + Sbjct: 74 LSAVRSFYRYLMREGLIQKNPTLNASSPRLDKRLPEFLTTAEVSKLLRMPDSSTPQGLRD 133 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT---IITVELP-----DGFMKL 244 + E L SGLR S+ + +++L + I+ G+ I+ + LP ++ L Sbjct: 134 KAFMELLYASGLRVSELVKLDIENLDLHSHQIRVWGKGSKERIVLMGLPAIQSIQTYLNL 193 Query: 245 LAMTPIGKET---FFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISAD 299 GK F+N + +++A F A +AG+ K H +R AT D Sbjct: 194 GRPLLKGKRNTPALFLNPNGGRLSARSFQERLDKLAHQAGIEKHVHPHMLRHTFATHLLD 253 Query: 300 AGATAHELMATYGWKTVDQAETYT 323 GA + G + + YT Sbjct: 254 GGADLRVVQELLGHSNLSTTQIYT 277 >gi|23502343|ref|NP_698470.1| phage integrase family site specific recombinase [Brucella suis 1330] gi|23348323|gb|AAN30385.1| site-specific recombinase, phage integrase family [Brucella suis 1330] Length = 164 Score = 44.7 bits (104), Expect = 0.019, Method: Compositional matrix adjust. Identities = 34/139 (24%), Positives = 60/139 (43%), Gaps = 6/139 (4%) Query: 205 RCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ-- 262 RCS + + + F ++ KTG + + + ++L TP ET + + Sbjct: 21 RCSKTVFLDGEAKSVDGFELRQGKTGKRLLLPITPILSEVLEATPRQGETVLVTAYGEPF 80 Query: 263 --KMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320 K + + W + G + HG+RK I A+ GA+ ++M T G + AE Sbjct: 81 SPKSLTGRMADWTPSAKLPKGF--TLHGLRKTLGKILAEGGASTRQIMDTLGHDDIAHAE 138 Query: 321 TYTKGADRIRLGIKNSRRI 339 YT+ A++ RL R+ Sbjct: 139 LYTREAEQARLATDGMSRV 157 >gi|295695953|ref|YP_003589191.1| tyrosine recombinase XerD [Bacillus tusciae DSM 2912] gi|295411555|gb|ADG06047.1| tyrosine recombinase XerD [Bacillus tusciae DSM 2912] Length = 295 Score = 44.7 bits (104), Expect = 0.019, Method: Compositional matrix adjust. Identities = 49/248 (19%), Positives = 98/248 (39%), Gaps = 26/248 (10%) Query: 99 FDQIIRKSGDFDYRKITTKHI---RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAI 155 F ++++G D+ + +HI + ++ P++ + + S+R +++ R+ + + Sbjct: 33 FSDFLQRTGCGDWPETGRRHIVAYLAHLQKLGRAPATVSRHMASLRSFYQFLSREGLIEV 92 Query: 156 NPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP-----RLAFEFLLYSGLRCSDSC 210 +P ++ PK R E++++ + EG P R E L +G+R S+ Sbjct: 93 DPTGQLDSPKADKRLPRVLNVEEVERLLA-APEGLTPMALRDRAMLEMLYATGVRVSELV 151 Query: 211 RAGVQHLQNNIFSIKTQKTGT-------------IITVELPDGFMKLLAMTPIGKETFFI 257 V + N+ +K G+ + L G LL G F+ Sbjct: 152 SLNVTDVNLNMGYVKCYGKGSKERIVPLGSAALEAVHAYLTRGRAGLLKNGDPG--ALFV 209 Query: 258 NNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKT 315 N+ +++ F K A AG+ K+ H +R AT + GA + G Sbjct: 210 NHQGKRLTRQGFWKILKKYAQTAGIQKAITPHTLRHSFATHLLENGADLRAVQEMLGHAD 269 Query: 316 VDQAETYT 323 + + YT Sbjct: 270 ISTTQIYT 277 >gi|319655065|ref|ZP_08009133.1| hypothetical protein HMPREF1013_05756 [Bacillus sp. 2_A_57_CT2] gi|317393243|gb|EFV74013.1| hypothetical protein HMPREF1013_05756 [Bacillus sp. 2_A_57_CT2] Length = 279 Score = 44.7 bits (104), Expect = 0.019, Method: Compositional matrix adjust. Identities = 50/242 (20%), Positives = 99/242 (40%), Gaps = 17/242 (7%) Query: 102 IIRKSGDFDYRKITTKHIR-----SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAIN 156 +I+ GD ITT+ I+ E + + I+F+ S LFKWA ++YV++N Sbjct: 34 LIKYFGDIKITDITTESIKLYLGEVAAELKASSLCHRIRFIKS---LFKWAQEEKYVSVN 90 Query: 157 PCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSC---RAG 213 P +++ PK ++ + T+E+++ + + L FEF+ +G R + R Sbjct: 91 PVSTIKEPKPESRIPKFLTEEEIELLREACKTTFEKAL-FEFMYSTGCRIGEVVKLDRHS 149 Query: 214 VQHLQNN--IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFIN-NDKQKMNATQFS 270 + + + +F ++ + L ++ F+ +M+ Q Sbjct: 150 INMAEQSVIVFGKGKKEREVYFNTRCSIWLKRYLEERYDDQQALFVTIRAPHRMSIAQMR 209 Query: 271 IWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 K + +AG+NK H +R AT + GA + G + + Y + Sbjct: 210 YVIKQISKRAGINKCIHPHQLRHSYATTLINNGAPLEVIQNLMGHEKSETTRVYAYLSGH 269 Query: 329 IR 330 +R Sbjct: 270 LR 271 >gi|325860159|ref|ZP_08173284.1| putative tyrosine recombinase XerD [Prevotella denticola CRIS 18C-A] gi|325482246|gb|EGC85254.1| putative tyrosine recombinase XerD [Prevotella denticola CRIS 18C-A] Length = 315 Score = 44.7 bits (104), Expect = 0.020, Method: Compositional matrix adjust. Identities = 48/210 (22%), Positives = 86/210 (40%), Gaps = 19/210 (9%) Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT---EGIRPWTKEDMQQFKSF--W 186 S + L+ +R +++ V Y+ +P +E PK+ E + + ++Q W Sbjct: 74 SLARILSGVRQFYRFLVLDGYMEADPTELLESPKQPDHLPEVLSTAEVDLLEQAVDLTKW 133 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT---IITV------EL 237 EG + R E L GLR S+ + L ++ G+ ++ + EL Sbjct: 134 -EGHRNRAIIEVLFSCGLRVSELTHLKLSDLYREEQFVRVMGKGSKERLVPISPRALDEL 192 Query: 238 PDGFM--KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFS 293 F ++ + P ++ F+N + T I K A +AG+ K S H +R Sbjct: 193 DCWFADRNVMKIKPGEEDYVFLNRRGHHLTRTMILIMIKRYAVEAGIRKTISPHTLRHSF 252 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYT 323 AT + GA + A G +++ E YT Sbjct: 253 ATSLLEGGADLRAIQAMLGHESIGTTEIYT 282 >gi|327312733|ref|YP_004328170.1| putative tyrosine recombinase XerD [Prevotella denticola F0289] gi|326945335|gb|AEA21220.1| putative tyrosine recombinase XerD [Prevotella denticola F0289] Length = 315 Score = 44.7 bits (104), Expect = 0.020, Method: Compositional matrix adjust. Identities = 51/210 (24%), Positives = 87/210 (41%), Gaps = 19/210 (9%) Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT---EGIRPWTKEDMQQFKSF--W 186 S + L+S+R +++ V Y+ +P +E PK+ E + + ++Q W Sbjct: 74 SLARILSSVRQFYRFLVLDGYMEADPTELLESPKQPDHLPEVLSTAEVDLLEQAVDLTKW 133 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT---IITV------EL 237 EG + R E L GLR S+ + L + ++ G+ ++ + EL Sbjct: 134 -EGHRNRAIIEVLFSCGLRVSELTHLKLSDLYRDEQFVRVMGKGSKERLVPISPRALDEL 192 Query: 238 PDGFMKLLAM-TPIGKETF-FINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFS 293 F M G+E + F+N + T I K A +AG+ K S H +R Sbjct: 193 DCWFADRNVMKIKSGEEDYVFLNRRGHHLTRTMILIMIKRYAVEAGIRKTISPHTLRHSF 252 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYT 323 AT + GA + A G +++ E YT Sbjct: 253 ATSLLEGGADLRAIQAMLGHESIGTTEIYT 282 >gi|160891605|ref|ZP_02072608.1| hypothetical protein BACUNI_04058 [Bacteroides uniformis ATCC 8492] gi|317478317|ref|ZP_07937481.1| tyrosine recombinase XerD [Bacteroides sp. 4_1_36] gi|156859012|gb|EDO52443.1| hypothetical protein BACUNI_04058 [Bacteroides uniformis ATCC 8492] gi|316905476|gb|EFV27266.1| tyrosine recombinase XerD [Bacteroides sp. 4_1_36] Length = 317 Score = 44.7 bits (104), Expect = 0.020, Method: Compositional matrix adjust. Identities = 56/233 (24%), Positives = 96/233 (41%), Gaps = 19/233 (8%) Query: 117 KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176 +H SG+ P S + L+ ++ F + V +Y+ +P +E PK + T Sbjct: 65 QHFASGLHDIGIHPRSQARILSGIKSFFHFLVMADYLEGDPSELLEGPKIGFKLPEVLTV 124 Query: 177 EDMQQFKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT- 231 E++ + S +EG + R E L GLR S+ C + L + IK + G+ Sbjct: 125 EEIDRIISAIDLGTNEGQRNRAILETLYSCGLRVSELCNLKISDLYFDEGFIKVEGKGSK 184 Query: 232 --IITV------ELPDGFMKLLAMTPIGK---ETFFINNDKQKMNATQFSIWFKAKATKA 280 ++ + E+ + F+ I K + F+ + ++ K A KA Sbjct: 185 QRLVPISSRAIKEIRNWFVDRNGGWKIKKDFEDYVFLARWGKNISRIMVFHLIKELAKKA 244 Query: 281 GVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 G+ K S H R AT + GA + + G +++ E YT DR RL Sbjct: 245 GITKNISPHTFRHSFATHLLEGGANLRAIQSMLGHESIATTEIYTH-IDRHRL 296 >gi|190410733|ref|YP_001966071.1| putative integrase [Thermus sp. 4C] gi|148608607|gb|ABQ95627.1| putative integrase [Thermus sp. 4C] Length = 386 Score = 44.7 bits (104), Expect = 0.021, Method: Compositional matrix adjust. Identities = 52/239 (21%), Positives = 99/239 (41%), Gaps = 32/239 (13%) Query: 111 YRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAI--NPCLSVERPKRKT 168 + ++ ++HIR+ + SR+ +P A + L S+R LF++ E + + +P V+RPK Sbjct: 127 FEEVGSQHIRAFLASREVSPHRAGRVLASLRKLFRYLAEVEGLPLLKDPTEGVKRPKLPR 186 Query: 169 EGIRPWTKEDMQQFKSFWSEGSQPRLAFE------FLLYSGLRCSDSCRAGVQHL--QNN 220 T ++ + + PR+A FL +GLR S++ L Q+ Sbjct: 187 RLPVYLTPPEVARLLQAAYQNRSPRVALRDWALLAFLYGTGLRLSEALALTYADLTYQDG 246 Query: 221 I-FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF--FINNDKQKMNATQFSIWFKAKA 277 I +I+ Q G G +++ ++P + ++ + + + T IW Sbjct: 247 IPHAIRVQGKG---------GKERVVVLSPTAQRALHQWLKHRNLEGHPTSPYIWSHTTG 297 Query: 278 TKAGVNKSAHGVRKFSATISADAGA------TAHELMATYGWKTVDQAETYTKGADRIR 330 G SA V ++ AG T H+L +Y V+ +G D ++ Sbjct: 298 PNRGKPFSARAVEAMVKRVARRAGLKDWRRITPHKLRHSYASALVEAG----RGIDEVK 352 >gi|257884210|ref|ZP_05663863.1| integrase [Enterococcus faecium 1,231,501] gi|257820048|gb|EEV47196.1| integrase [Enterococcus faecium 1,231,501] Length = 380 Score = 44.7 bits (104), Expect = 0.022, Method: Compositional matrix adjust. Identities = 45/180 (25%), Positives = 84/180 (46%), Gaps = 20/180 (11%) Query: 59 EYINS--PRKKPTTLK-----WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDY 111 EY N+ ++KP T + W+ +EY+++ +L RI + + ++ + GD Sbjct: 55 EYENNLLKKEKPKTYRDVYDLWM-TEYKRTVRGSTLLKTERI----FKNHVLEELGDIYI 109 Query: 112 RKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171 +IT I+ ++ + +A + + ++FK+AVR + NP ++ +PKR+ + Sbjct: 110 SEITPIKIQKLMDKWANKYDTAPKMMNYTGLVFKYAVRFGIIESNPTDAIRKPKRRKKAT 169 Query: 172 RPWTKEDMQQFKSFWSE-GSQPRLA----FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226 D +Q K F E +QP L F L +G+R + AG ++ F KT Sbjct: 170 VEEPFYDKKQLKLFLDELYNQPNLKIQAFFRLLAMTGMRKQE---AGALEWRDIDFKAKT 226 >gi|302335678|ref|YP_003800885.1| integrase family protein [Olsenella uli DSM 7084] gi|301319518|gb|ADK68005.1| integrase family protein [Olsenella uli DSM 7084] Length = 308 Score = 44.7 bits (104), Expect = 0.022, Method: Compositional matrix adjust. Identities = 44/220 (20%), Positives = 84/220 (38%), Gaps = 20/220 (9%) Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQP 192 L+++R L++W VR+ Y + ++ PK + T D+ Q E G + Sbjct: 84 LSAIRTLYRWLVREGYTNKDAAAAIASPKVARTLPKTMTDPDVCQLLGACDEDGVIGLRD 143 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT--------IITVELPDGFM-- 242 R E L SG R S+ R V + + G + ++ D ++ Sbjct: 144 RALIELLYASGARISEISRLDVGDIDRERRQVTLLGKGGKERIVPLYDMCIDELDAYLLT 203 Query: 243 ---KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS 297 L+ E F++ ++M+A F+ + AG++ + H +R AT Sbjct: 204 ARPALVVRGEGASEALFVSTRGRRMSAAALREAFERRVRLAGLDADITPHAMRHTYATEL 263 Query: 298 ADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNS 336 GA + G ++ + YT DR++ + + Sbjct: 264 LSGGADLRSVQELLGHSSLSTTQIYTHLSVDRLKAAARQA 303 >gi|145300550|ref|YP_001143391.1| tyrosine recombinase XerC [Aeromonas salmonicida subsp. salmonicida A449] gi|142853322|gb|ABO91643.1| tyrosine recombinase XerC [Aeromonas salmonicida subsp. salmonicida A449] Length = 322 Score = 44.7 bits (104), Expect = 0.023, Method: Compositional matrix adjust. Identities = 50/222 (22%), Positives = 93/222 (41%), Gaps = 23/222 (10%) Query: 87 LAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSGVESRKH----TPSSAIQFLTS 139 L+ ++R ++ES+ + + + G D+ ++ +RS V +R H P S +++ Sbjct: 37 LSPHTRSNYESHLQAMAAELVRLGVSDWARLEASQVRSLV-TRMHKAGLAPRSLSTKISA 95 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRLA 195 +R W VRQ + NP + PK+ + ++M Q + E + R Sbjct: 96 LRSFCDWQVRQGRLTANPARGIVTPKQGRPLPKNLDVDEMYQLLNITDEQDPLAVRDRAI 155 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM------KLLAMTP 249 E + SGLR ++ + ++ + +K G+ V LP G M K L + P Sbjct: 156 MELMYSSGLRLAELVGLNLGDIKLDDRQLKVTGKGSRERV-LPMGRMAVEWLHKWLKVRP 214 Query: 250 I--GKE--TFFINNDKQKMNATQFSIWFKAKATKAGVNKSAH 287 + G E F++ KQ+++A K +N H Sbjct: 215 LLAGDEADALFVSKRKQRLSARSVQERLDGWGNKQALNAHVH 256 >gi|189345769|ref|YP_001942298.1| integrase [Chlorobium limicola DSM 245] gi|189339916|gb|ACD89319.1| integrase domain protein SAM domain protein [Chlorobium limicola DSM 245] Length = 223 Score = 44.7 bits (104), Expect = 0.023, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 52/118 (44%), Gaps = 9/118 (7%) Query: 110 DYRKITTKHI---RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP-K 165 + R +T H+ R+ +E R ++ + L S+ LF + Q V NP L V+RP Sbjct: 61 EMRIVTRAHLLAWRTDLEQRNLAAATIRRKLASISSLFDYLCEQNAVLHNPVLGVKRPAA 120 Query: 166 RKTEGIRPWTKEDMQQF-----KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ 218 EG P + + + +G + R LLY GLR + CR V+ LQ Sbjct: 121 NNNEGTTPALGDSQARMLLDAPPANTLKGKRDRAILATLLYHGLRREELCRLQVKDLQ 178 >gi|256845727|ref|ZP_05551185.1| DNA integration/recombination/invertion protein [Fusobacterium sp. 3_1_36A2] gi|256719286|gb|EEU32841.1| DNA integration/recombination/invertion protein [Fusobacterium sp. 3_1_36A2] Length = 405 Score = 44.7 bits (104), Expect = 0.023, Method: Compositional matrix adjust. Identities = 31/123 (25%), Positives = 61/123 (49%), Gaps = 10/123 (8%) Query: 91 SRISFESYF---DQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWA 147 +R S YF ++ +++ DFD K+ + R +P++ + + + ++FK+A Sbjct: 114 ARCSLIPYFYRENKKLKEIEDFD----IEKYYYHELNYRNISPNTVLHYHYLLSLVFKYA 169 Query: 148 VRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL--YSGLR 205 +R + ++INP SVE+PK+K + E++ + + F L+ Y GLR Sbjct: 170 LRHKIISINPLDSVEKPKKKKYVAEVYNAEEINILLDLLKR-EEESIYFGVLMAAYFGLR 228 Query: 206 CSD 208 S+ Sbjct: 229 RSE 231 >gi|261405985|ref|YP_003242226.1| integrase family protein [Paenibacillus sp. Y412MC10] gi|261282448|gb|ACX64419.1| integrase family protein [Paenibacillus sp. Y412MC10] Length = 294 Score = 44.7 bits (104), Expect = 0.024, Method: Compositional matrix adjust. Identities = 37/191 (19%), Positives = 83/191 (43%), Gaps = 17/191 (8%) Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF----KSFW 186 SS ++ S+R F++ VRQ + +P ++ PK + + + T E + + S Sbjct: 68 SSLLRCTASLRSFFQYLVRQAVIVQDPTQLLDNPKPERKPPKSLTVEQVDKLLSAPDSGT 127 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246 +G++ + E L SG++ S+ + + + ++ +G G ++L Sbjct: 128 PQGARDKAMLELLYASGIKVSELVNLSIHDIHLEMRFLRCAVSG---------GKERILP 178 Query: 247 MTPIGKET--FFINN--DKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGA 302 +TPI E+ F++ + DK +A + +++ + T+ ++K+ D Sbjct: 179 ITPIAAESVAFYVRDMRDKLMRDAGEDALFLNSLGTRLTRQGFWKIIKKYGKLAGIDEDI 238 Query: 303 TAHELMATYGW 313 T H L ++ Sbjct: 239 TPHTLRHSFAM 249 >gi|254708144|ref|ZP_05169972.1| phage integrase [Brucella pinnipedialis M163/99/10] gi|261315648|ref|ZP_05954845.1| integrase/recombinase [Brucella pinnipedialis M163/99/10] gi|261304674|gb|EEY08171.1| integrase/recombinase [Brucella pinnipedialis M163/99/10] Length = 164 Score = 44.3 bits (103), Expect = 0.024, Method: Compositional matrix adjust. Identities = 34/139 (24%), Positives = 60/139 (43%), Gaps = 6/139 (4%) Query: 205 RCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ-- 262 RCS + + + F ++ KTG + + + ++L TP ET + + Sbjct: 21 RCSKTVLLDGEAKSVDGFELRQGKTGKRLFLPITPILSEVLEATPRQGETVLVTAYGEPF 80 Query: 263 --KMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320 K + + W + G + HG+RK I A+ GA+ ++M T G + AE Sbjct: 81 SPKSLTGRMADWTASAKLPKGF--TLHGLRKTLGKILAEGGASTRQIMDTLGHDDIAHAE 138 Query: 321 TYTKGADRIRLGIKNSRRI 339 YT+ A++ RL R+ Sbjct: 139 LYTREAEQARLATDGMSRV 157 >gi|171913488|ref|ZP_02928958.1| integrase family protein [Verrucomicrobium spinosum DSM 4136] Length = 358 Score = 44.3 bits (103), Expect = 0.025, Method: Compositional matrix adjust. Identities = 47/226 (20%), Positives = 97/226 (42%), Gaps = 18/226 (7%) Query: 112 RKITTKHIRSGVES-RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170 R+IT + + + V++ +K P +AI +L+ + F W + + NP V+ PK+ T+G Sbjct: 100 RQITPRQVSAWVDALKKQNPETAINYLSVAQSWFSWLQQGFKINSNPASQVKPPKKPTKG 159 Query: 171 ----IRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226 +RP E+ ++ + + A L++GLR + A + + Sbjct: 160 RKQFLRP---EEARKLITAATGDRDLTFALYCALHAGLRRKEVIEARPSWFDLDAGLLHV 216 Query: 227 QKTGTII-------TVELPDGFMKLLAMTPIGKETFFINNDKQKMNAT---QFSIWFKAK 276 Q T T + T+ L F + L +E F ++ ++ + F ++ Sbjct: 217 QATPTFVPKDKDNRTIPLTKEFREWLRKNYTMQEPFMLSPERTHGKSPYRYNFGRIYERL 276 Query: 277 ATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 +AG++ + H +R+ A++ G + +++ G V TY Sbjct: 277 LERAGLSANFHDLRRTFASLHVSKGTSVYKVAQWLGDGVVVVQRTY 322 >gi|71274794|ref|ZP_00651082.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella fastidiosa Dixon] gi|71897599|ref|ZP_00679844.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella fastidiosa Ann-1] gi|71902531|ref|ZP_00684453.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella fastidiosa Ann-1] gi|71164526|gb|EAO14240.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella fastidiosa Dixon] gi|71727745|gb|EAO30016.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella fastidiosa Ann-1] gi|71732502|gb|EAO34555.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella fastidiosa Ann-1] Length = 324 Score = 44.3 bits (103), Expect = 0.025, Method: Compositional matrix adjust. Identities = 55/223 (24%), Positives = 88/223 (39%), Gaps = 25/223 (11%) Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + ++P S + L+ +R F +AV + NP + P + T+ ++ + Sbjct: 84 QHYSPLSNARLLSVLRTFFSYAVECGWRNDNPSTLLAHPVLPHPLPKALTESQIEALLAA 143 Query: 186 WS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDG 240 S EG + R E + +GLR S+ V L ++ T K G V L + Sbjct: 144 PSIETPEGLRNRAMLELMYAAGLRVSELVTLPVAMLNRRQGVLRITGKGGKERLVPLGEE 203 Query: 241 FMK------------LLAMTPI-----GKETFFINNDKQKMNATQFSIWFKAKATKAGV- 282 L A PI G FIN + ++++ QF W K A AG+ Sbjct: 204 SQHWLQRYLEQARPSLAADKPIPADSDGDVPLFINTNLKRLSRQQFWRWIKHYAALAGIA 263 Query: 283 -NK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 NK S H +R AT + GA L G +++ + YT Sbjct: 264 PNKVSPHVLRHSFATHLLNHGADLRALQMLLGHRSISTTQIYT 306 >gi|313123528|ref|YP_004033787.1| tyrosine recombinase xerd subunit [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312280091|gb|ADQ60810.1| Tyrosine recombinase XerD subunit [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 301 Score = 44.3 bits (103), Expect = 0.025, Method: Compositional matrix adjust. Identities = 47/214 (21%), Positives = 92/214 (42%), Gaps = 24/214 (11%) Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQFKSFW 186 SS + ++++ ++W VRQ+ +A++P ++ PKR+ T+ + ++Q Sbjct: 73 SSISRLVSTLSRFYQWLVRQQLIALDPMSQIDAPKREKRMPLALTEAEVGKLLEQPDLTT 132 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT---IITVE------- 236 G + R E L +G+R S++ + + ++ IK G+ +I V Sbjct: 133 DLGIRDRALVELLYATGMRVSEAVNLKLADVHADLQLIKVLGKGSKERLIPVSALALDWI 192 Query: 237 ---LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAK--ATKAGVNKSA--HGV 289 LP +LL GK + ++ + + T+ ++W K K +AG+ K H + Sbjct: 193 KRYLPVRDQQLLKR---GKSSDYLFLNSRGGQLTRQAVWQKIKKYCQQAGIAKDVTPHTL 249 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYT 323 R AT + GA + G + + YT Sbjct: 250 RHSFATHLLEHGADLRVVQEILGHTDISTTQIYT 283 >gi|294674930|ref|YP_003575546.1| tyrosine recombinase XerD [Prevotella ruminicola 23] gi|294472077|gb|ADE81466.1| tyrosine recombinase XerD [Prevotella ruminicola 23] Length = 303 Score = 44.3 bits (103), Expect = 0.026, Method: Compositional matrix adjust. Identities = 48/213 (22%), Positives = 85/213 (39%), Gaps = 21/213 (9%) Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK-----S 184 P S + L+ +R FK+ Y +P +E P+ T +++ + + S Sbjct: 69 PRSQCRILSGIRSFFKFVQLDGYRDDDPTELLESPQIGDHLPEVLTTQEVDRLEESIDLS 128 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT---IITVELPDGF 241 W EG + R E L GLR S+ + L + ++ G+ ++ + P Sbjct: 129 KW-EGHRNRAIIEVLFSCGLRVSELVNLKLSDLYLDEEYVRVLGKGSKERLVPIS-PKAI 186 Query: 242 MKL---------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290 +L + + P ++ F+N + T I KA+A +A + K S H +R Sbjct: 187 QELRFWFNVRNLMKIKPGEEDYVFLNRRGAHLTRTMILIMIKAQAKEARIQKTISPHTLR 246 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYT 323 AT + GA + A G + + E YT Sbjct: 247 HSFATALLEGGADLRFIQALLGHEDIGTTEIYT 279 >gi|300812172|ref|ZP_07092616.1| tyrosine recombinase XerD [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300496857|gb|EFK31935.1| tyrosine recombinase XerD [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 301 Score = 44.3 bits (103), Expect = 0.027, Method: Compositional matrix adjust. Identities = 47/214 (21%), Positives = 92/214 (42%), Gaps = 24/214 (11%) Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQFKSFW 186 SS + ++++ ++W VRQ+ +A++P ++ PKR+ T+ + ++Q Sbjct: 73 SSISRLVSTLSRFYQWLVRQQLIALDPMSQIDAPKREKRMPLALTEAEVGKLLEQPDLTT 132 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT---IITVE------- 236 G + R E L +G+R S++ + + ++ IK G+ +I V Sbjct: 133 DLGIRDRALVELLYATGMRVSEAVNLQLADVHADLQLIKVLGKGSKERLIPVSALALDWI 192 Query: 237 ---LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAK--ATKAGVNKSA--HGV 289 LP +LL GK + ++ + + T+ ++W K K +AG+ K H + Sbjct: 193 KRYLPVRDQQLLKR---GKSSDYLFLNSRGGQLTRQAVWQKIKKYCQQAGIAKDVTPHTL 249 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYT 323 R AT + GA + G + + YT Sbjct: 250 RHSFATHLLEHGADLRVVQEILGHTDISTTQIYT 283 >gi|288800351|ref|ZP_06405809.1| integrase/recombinase XerD [Prevotella sp. oral taxon 299 str. F0039] gi|288332564|gb|EFC71044.1| integrase/recombinase XerD [Prevotella sp. oral taxon 299 str. F0039] Length = 311 Score = 44.3 bits (103), Expect = 0.027, Method: Compositional matrix adjust. Identities = 53/219 (24%), Positives = 87/219 (39%), Gaps = 19/219 (8%) Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 + RK SS + L+ +R +++ V + NP +E P + E++ Q Sbjct: 66 LHERKIGASSQARILSGVRSFYRYLVIDGILEDNPTELLESPILGEHLPEVLSTEEVDQL 125 Query: 183 K-----SFWSEGSQPRLAFEFLLYSGLRCSDSCR---AGVQHLQNNIFSIKTQKTGTIIT 234 + S W EG + R E L GLR S+ + + ++ I I +I Sbjct: 126 QNSIDLSKW-EGHRNRAIIEILFSCGLRVSELINLKLSNIYIIERYIRVIGKGSKERLIP 184 Query: 235 V------ELPDGFM--KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-- 284 + EL F ++ + P ++ F+N + T I K +A AG+ K Sbjct: 185 ISDKALYELELWFRDRNIMNIKPGEQDYVFLNRRGAHLTRTMILIMIKKQAELAGIKKTI 244 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 S H +R AT GA + A G ++V E YT Sbjct: 245 SPHTLRHSFATELLRGGADLIAIQAMLGHESVSTTEIYT 283 >gi|254689202|ref|ZP_05152456.1| Phage integrase [Brucella abortus bv. 6 str. 870] gi|256257452|ref|ZP_05462988.1| Phage integrase [Brucella abortus bv. 9 str. C68] gi|260754704|ref|ZP_05867052.1| conserved hypothetical protein [Brucella abortus bv. 6 str. 870] gi|260883729|ref|ZP_05895343.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68] gi|297248299|ref|ZP_06932017.1| hypothetical protein BAYG_01242 [Brucella abortus bv. 5 str. B3196] gi|260674812|gb|EEX61633.1| conserved hypothetical protein [Brucella abortus bv. 6 str. 870] gi|260873257|gb|EEX80326.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68] gi|297175468|gb|EFH34815.1| hypothetical protein BAYG_01242 [Brucella abortus bv. 5 str. B3196] Length = 341 Score = 44.3 bits (103), Expect = 0.027, Method: Compositional matrix adjust. Identities = 57/266 (21%), Positives = 102/266 (38%), Gaps = 15/266 (5%) Query: 62 NSPRKKPTTLKW--LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD-----FDYRKI 114 N R P K+ +I+ Y+ S + LA +++ ++ + D+I +K GD FD + Sbjct: 46 NDSRVIPDASKFRAVITAYKSSHDYQKLADSTKRNWNGWLDRIGKKFGDLSIAQFDLPQK 105 Query: 115 TTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRP 173 IR P +A + + + +AV ++ NPC +++ + Sbjct: 106 IRPVIRKWRGEFADKPRTADYGMQVLSRVLSYAVDPLGKISQNPCEGIKQLYKNDRAAII 165 Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII 233 WT +D+ + K+ S + A + ++GLR D R H+ +N + T K+ Sbjct: 166 WTDQDIARLKTKCS--PEVAWAVDLAAHTGLRAGDLLRLSWSHITDNAIILPTGKSRHTK 223 Query: 234 TVELP--DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWF---KAKATKAGVNKSAHG 288 +P LL P N K F F + +A + H Sbjct: 224 EAVIPLYAELRALLQTIPRRSPIVLTNTRKAPWTVNGFGSSFSDCRGEAKLGDRDLHFHD 283 Query: 289 VRKFSATISADAGATAHELMATYGWK 314 R +AT AG + + GW+ Sbjct: 284 FRGTAATKFYIAGLSERVIAEIMGWE 309 >gi|170729959|ref|YP_001775392.1| site-specific tyrosine recombinase XerD [Xylella fastidiosa M12] gi|167964752|gb|ACA11762.1| integrase/recombinase [Xylella fastidiosa M12] Length = 324 Score = 44.3 bits (103), Expect = 0.028, Method: Compositional matrix adjust. Identities = 55/223 (24%), Positives = 88/223 (39%), Gaps = 25/223 (11%) Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + ++P S + L+ +R F +AV + NP + P + T+ ++ + Sbjct: 84 QHYSPLSNARLLSVLRTFFSYAVECGWRNDNPSTLLAHPVLPHPLPKALTESQIEALLAA 143 Query: 186 WS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDG 240 S EG + R E + +GLR S+ V L ++ T K G V L + Sbjct: 144 PSIETPEGLRNRAMLELMYAAGLRVSELITLPVAMLNRRQGVLRITGKGGKERLVPLGEE 203 Query: 241 FMK------------LLAMTPI-----GKETFFINNDKQKMNATQFSIWFKAKATKAGV- 282 L A PI G FIN + ++++ QF W K A AG+ Sbjct: 204 SQHWLQRYLEQARPSLAADKPIPADSDGDVPLFINTNLKRLSRQQFWRWIKHYAALAGIA 263 Query: 283 -NK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 NK S H +R AT + GA L G +++ + YT Sbjct: 264 PNKVSPHVLRHSFATHLLNHGADLRALQMLLGHRSISTTQIYT 306 >gi|34451618|gb|AAQ72365.1| putative integrase [Thermus sp. R] Length = 391 Score = 44.3 bits (103), Expect = 0.029, Method: Compositional matrix adjust. Identities = 51/234 (21%), Positives = 96/234 (41%), Gaps = 28/234 (11%) Query: 111 YRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAI--NPCLSVERPKRKT 168 + ++ ++HIR+ + SR+ +P A + L S+R LF++ E + + +P V+RPK Sbjct: 127 WEEVGSQHIRAFLASREVSPYRAGRVLASLRKLFRYLAEVEGLPLLKDPTEGVKRPKLPR 186 Query: 169 EGIRPWTKEDMQQFKSFWSEGSQPRLAFE------FLLYSGLRCSDSCRAGVQHL--QNN 220 T ++ + + PR+A FL +GLR S++ L Q+ Sbjct: 187 RLPVYLTPPEVARLLQAAYQNRSPRVALRDWALLAFLYGTGLRLSEALALTYADLTYQDG 246 Query: 221 I-FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF--FINNDKQKMNATQFSIWFKAKA 277 I +I+ Q G G +++ ++P + ++ + + + T IW Sbjct: 247 IPHAIRVQGKG---------GKERVVVLSPTAQRALHQWLKHRNLEGHPTSPYIWSHTSG 297 Query: 278 TKAGVNKSAHGVRKFSATISADAGA------TAHELMATYGWKTVDQAETYTKG 325 G SA V ++ AG T H+L +Y V+ +G Sbjct: 298 PNRGKPFSARAVEAMVKRVAKRAGLKDWRRITPHKLRHSYASALVEAGRGIDEG 351 >gi|325925497|ref|ZP_08186888.1| tyrosine recombinase XerD subunit [Xanthomonas perforans 91-118] gi|325544089|gb|EGD15481.1| tyrosine recombinase XerD subunit [Xanthomonas perforans 91-118] Length = 323 Score = 44.3 bits (103), Expect = 0.029, Method: Compositional matrix adjust. Identities = 56/274 (20%), Positives = 108/274 (39%), Gaps = 48/274 (17%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134 ++ +R AH G L ++ ++ FDY + T+ ++P S Sbjct: 55 LARWRDGAHGGLLGID--------------RAALFDYLRWRTQA--------NYSPRSTA 92 Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGS 190 + L+++R + +R + +P ++ P+ + T+ ++ + G Sbjct: 93 RLLSTLRAFYGLCLRDGVRSDDPTTLIDPPQLPRSLPKALTESQIEALLAAPDVDTPAGL 152 Query: 191 QPRLAFEFLLYSGLRCSDSCR---AGVQHLQNNIFSI--KTQKTGTIITVELPDGFMK-- 243 + R E + +GLR S+ GV +L+ + + K K + E +++ Sbjct: 153 RDRAMLELMYAAGLRVSELVNLPAVGV-NLRQGVLRVTGKGSKDRLVPLGEESQHWLERY 211 Query: 244 -------LLAMTPI----GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAHGV 289 L A TP+ G+ FI+ +Q ++ QF K A AG++ S HG+ Sbjct: 212 LREARPLLAANTPVAAVDGQVPLFIDAARQPLSRQQFWALVKRYAAVAGIDPDTVSPHGL 271 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYT 323 R AT + GA L G ++ + YT Sbjct: 272 RHSFATHLLNHGADLRALQMLLGHSSLSTTQIYT 305 >gi|116618399|ref|YP_818770.1| tyrosine recombinase XerD subunit [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116097246|gb|ABJ62397.1| tyrosine recombinase XerD subunit [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 297 Score = 44.3 bits (103), Expect = 0.029, Method: Compositional matrix adjust. Identities = 57/237 (24%), Positives = 94/237 (39%), Gaps = 30/237 (12%) Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-- 188 SS I+ +T++R F + VR++ VA NP V PK+ + E++ + E Sbjct: 70 SSVIRMVTTLRNFFGYLVREKVVAHNPMNDVRPPKKAEHLPAVLSIEEIDRLLQAPIEDT 129 Query: 189 --GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246 G + R E + +GLR S+ + L + I+T G + +P G + + Sbjct: 130 PLGLRNRTLLEVMYATGLRVSELVNLKMSDLHLQLGLIQTLGKGDKERI-IPIGEIAIDW 188 Query: 247 MTPIGKET-----------FFINNDKQKMNATQFSIW--FKAKATKAGVNK--SAHGVRK 291 +T E+ + ND+ + Q IW K T AG+ K S H +R Sbjct: 189 LTRYFNESRIVLLKDKESPYVFLNDRGNQISRQ-GIWKIIKKLVTTAGITKDVSPHTLRH 247 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348 AT + GA + G + + YT + +R+S V D P Sbjct: 248 SFATHILENGADLRIVQELLGHADISTTQIYTHIS---------KKRLSEVYDEYHP 295 >gi|222148689|ref|YP_002549646.1| phage-related integrase [Agrobacterium vitis S4] gi|221735675|gb|ACM36638.1| phage-related integrase [Agrobacterium vitis S4] Length = 346 Score = 44.3 bits (103), Expect = 0.030, Method: Compositional matrix adjust. Identities = 67/310 (21%), Positives = 120/310 (38%), Gaps = 30/310 (9%) Query: 23 YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSA 82 YY+ G R++ Y PA+ +T R ++ TL ++IS Y++ Sbjct: 23 YYYAWKGGPRLKEKYG-----TPAFAEEFRQATRDRSAPDAD-----TLAYVISLYKR-M 71 Query: 83 HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHTPSSAIQFLT 138 L ++R ++ Y I + GD D R + R+ ++ TP +A + Sbjct: 72 ELPRLKPSTRSTYLPYLKNIEIEFGDMDIRAVEATGSRAVFLEWRDTMATTPRAADIAWS 131 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP---WTKEDMQQFKSFWSEGSQPRLA 195 ++ + + V E + NPC + R G R WT D+ +F++ S Q A Sbjct: 132 ILQRIMAFGVHMEKLKRNPCTNAGRLAE--SGTRREIIWTPPDLSRFRAVASR--QLADA 187 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKE-- 253 +++G R D + +K KTG + + + K+L E Sbjct: 188 LLLAIWTGQRQGDLLKLQWSAYDGKHIRLKQGKTGRRVAILVSGTLGKMLDRLKAENEAR 247 Query: 254 -----TFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHEL 307 T N + ++ F + A KAG+ + H +R T++ AGA+ ++ Sbjct: 248 KVQSLTILTNQRGRTWTSSGFKTSWGKAAKKAGITGLTFHDLRGTFITMARRAGASIEDI 307 Query: 308 MATYGWKTVD 317 G T D Sbjct: 308 AKASGHTTKD 317 >gi|57234341|ref|YP_181631.1| phage integrase family site specific recombinase [Dehalococcoides ethenogenes 195] gi|57234884|ref|YP_181043.1| phage integrase family site specific recombinase [Dehalococcoides ethenogenes 195] gi|57234923|ref|YP_181020.1| phage integrase family site specific recombinase [Dehalococcoides ethenogenes 195] gi|57224789|gb|AAW39846.1| site-specific recombinase, phage integrase family [Dehalococcoides ethenogenes 195] gi|57225332|gb|AAW40389.1| site-specific recombinase, phage integrase family [Dehalococcoides ethenogenes 195] gi|57225371|gb|AAW40428.1| site-specific recombinase, phage integrase family [Dehalococcoides ethenogenes 195] Length = 319 Score = 44.3 bits (103), Expect = 0.030, Method: Compositional matrix adjust. Identities = 46/231 (19%), Positives = 92/231 (39%), Gaps = 16/231 (6%) Query: 107 GDFDYRKITTKHIRSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP 164 G D +++T HIR + +++ T P S + S++V F W R+ ++ +P + P Sbjct: 66 GLTDPKEVTASHIRGFLLTKQETCQPVSVHGYYRSIKVFFNWLTREGVISFSPMAPIRPP 125 Query: 165 KRKTEGIRPWTKEDMQQFKSFWSEGS-----QPRLAFEFLLYSGLRCSDSCRAGVQHLQN 219 K + IRP+ ++++ EG + R L+ +G+R + + + Sbjct: 126 KVPKKIIRPYYPDELRSL-LLACEGRGILSLRDRAIMLVLIDNGIRLGELANINISDIDV 184 Query: 220 NIFSI----KTQKTGTI-ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFK 274 + +I K +K + I+ K L + ++ D + + + Sbjct: 185 DRETISVWGKGRKQRVVGISKRTQMAVYKYLHARVDNNPSLWVTTDSKTLTPKGIYLAIH 244 Query: 275 AKATKAG---VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 +AG V S H R +AT+S G ++ + G T+ Y Sbjct: 245 RLGERAGLKDVRNSPHTFRHTAATLSIKNGGDLFQVQSMLGHTTLAMTRRY 295 >gi|161507450|ref|YP_001577404.1| integrase/recombinase [Lactobacillus helveticus DPC 4571] gi|260101638|ref|ZP_05751875.1| integrase/recombinase XerD [Lactobacillus helveticus DSM 20075] gi|160348439|gb|ABX27113.1| Integrase/recombinase [Lactobacillus helveticus DPC 4571] gi|260084571|gb|EEW68691.1| integrase/recombinase XerD [Lactobacillus helveticus DSM 20075] gi|323466665|gb|ADX70352.1| Tyrosine recombinase xerD [Lactobacillus helveticus H10] gi|328467464|gb|EGF38539.1| tyrosine recombinase xerD [Lactobacillus helveticus MTCC 5463] Length = 301 Score = 44.3 bits (103), Expect = 0.030, Method: Compositional matrix adjust. Identities = 48/217 (22%), Positives = 89/217 (41%), Gaps = 29/217 (13%) Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-- 188 SS + ++SMR ++W RQ +NP L ++ PK++ R + ++ ++ Sbjct: 72 SSISRLISSMRKFYQWLARQNIQKLNPMLEIDLPKKER---RLPVALNQKEINDLLAQPD 128 Query: 189 -----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT------IITVEL 237 G + R E L +G+R S+ +Q L ++ ++ G+ I +V L Sbjct: 129 IKRKLGLRDRAILETLYATGMRVSELINLELQDLHEDLGLVRVLGKGSKERLIPISSVAL 188 Query: 238 P--DGFMK-----LLAMTPIGKETFFINNDKQKMNATQFSIW--FKAKATKAGVNKSA-- 286 + K L+ E F+N+ +++ T+ +IW K AG+ K Sbjct: 189 HWIKQYQKEVRDPLILKAGQNDEHIFLNSRAKQL--TRQAIWQMIKKYCQSAGITKDVTP 246 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 H +R AT + GA + G + + YT Sbjct: 247 HTLRHTFATHLLENGADLRVVQEILGHSDISTTQIYT 283 >gi|284008874|emb|CBA75687.1| phage integrase [Arsenophonus nasoniae] Length = 326 Score = 44.3 bits (103), Expect = 0.031, Method: Compositional matrix adjust. Identities = 28/99 (28%), Positives = 46/99 (46%), Gaps = 1/99 (1%) Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125 KK + K L S Y S H+ L++ S+ I++ G+ I +HIR ++ Sbjct: 46 KKLLSFKELWSMYLNSPHFSELSIRSQKDKHQGGKNILKVFGNIHVNNIKPEHIRKYMDI 105 Query: 126 R-KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER 163 R + + A L+ M V F W + Y NPCL +++ Sbjct: 106 RGTQSKTQANHELSYMSVTFSWGYERGYCKNNPCLGIKK 144 >gi|42526683|ref|NP_971781.1| phage integrase family site specific recombinase [Treponema denticola ATCC 35405] gi|41816876|gb|AAS11662.1| site-specific recombinase, phage integrase family [Treponema denticola ATCC 35405] Length = 354 Score = 44.3 bits (103), Expect = 0.031, Method: Compositional matrix adjust. Identities = 55/217 (25%), Positives = 92/217 (42%), Gaps = 24/217 (11%) Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER---PKRKTEGIRPWTKEDMQQFKS- 184 +P + + S+R LFK AVR + +P + V+ P+ E + P ED+++ + Sbjct: 128 SPYTCENYACSLRTLFKKAVRDGVLVKDPTIGVKHIHCPESIKEFLMP---EDIRKLAAE 184 Query: 185 --FWSEGSQPRLAFEFLLYSGLRCSD--SCRAGVQHLQNNIFSIKTQKTGTIITVELPD- 239 G+ + AF F +GLR SD S + G + + QKT + + + D Sbjct: 185 PIGGILGADVKKAFLFACCTGLRISDLKSLKWGGVSFEKKTLTKIQQKTKRAVYLPIKDE 244 Query: 240 --GFMKLLAM---TPIGKETFFINNDKQKMNATQFSI-WFKAKATKAGVNKSA--HGVRK 291 F+ LLA ++ F + N Q+ I W K +AGV + H R Sbjct: 245 AIAFLHLLAEENPNRTDEDFIFPHVATTGTNMNQYLIEWGK----RAGVRQKIGWHLARH 300 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 AT+ ++GA + + G + YT+ DR Sbjct: 301 THATLLLESGADLYTVQKLLGHTKISTTAQYTQVTDR 337 >gi|183221814|ref|YP_001839810.1| tyrosine recombinase XerC [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189911886|ref|YP_001963441.1| tyrosine site-specific recombinase XerC [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167776562|gb|ABZ94863.1| Tyrosine site-specific recombinase XerC [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167780236|gb|ABZ98534.1| Tyrosine recombinase XerC [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 311 Score = 44.3 bits (103), Expect = 0.031, Method: Compositional matrix adjust. Identities = 50/227 (22%), Positives = 90/227 (39%), Gaps = 15/227 (6%) Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT---EGIRPWTKEDMQQ 181 S+K + + L+S+R +K+ R+E + NP L V PK K + P ED+ Sbjct: 79 SKKQDKRTQSRKLSSLRTFYKFLFREEKIGANPILQVSFPKTKKRLPKNFTPIETEDILD 138 Query: 182 FKSFWSE---GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-----QKTGTII 233 ++ + G + + E L +GLR + A + L + S+K ++ I Sbjct: 139 YEDPEKKEVLGKRDKAIVEVLYSTGLRVFELVNAKLSDLNEELTSLKVMGKRRKERFVFI 198 Query: 234 TVELPDGFMKLL-AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVR 290 E + L G E F+N K+ + + G+ K+ H R Sbjct: 199 GPEAKVALQEYLDERGNGGPEEIFLNQRGGKLTTRGIRYILSERRSVMGMEKAITPHKFR 258 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKNS 336 AT +AGA + G ++ + Y + DR++ +N+ Sbjct: 259 HTFATDLLNAGADIRAVQELLGHSSLSSTQVYLSVSRDRLKEVYRNA 305 >gi|104783227|ref|YP_609725.1| site-specific tyrosine recombinase XerD [Pseudomonas entomophila L48] gi|95112214|emb|CAK16941.1| site-specific tyrosine recombinase, integrase family [Pseudomonas entomophila L48] Length = 298 Score = 43.9 bits (102), Expect = 0.032, Method: Compositional matrix adjust. Identities = 49/221 (22%), Positives = 91/221 (41%), Gaps = 21/221 (9%) Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 + + P S +FL+ +R +++ +R+ +A++P L V+ P+ + ++ D++ Sbjct: 65 DQAYKPRSTARFLSGVRGFYRYLLRERMIAVDPTLQVDMPQLGRPLPKSLSEADVEALLK 124 Query: 185 F----WSEGSQPRLAFEFLLYSGLRCSD---------SCRAGVQHLQNNIFSIKTQKTG- 230 + G + R E L GLR ++ + R GV + + G Sbjct: 125 APDLGEAIGQRDRAMLEVLYACGLRVTELVSLTLDQVNLRQGVLRVMGKGSKERLVPMGE 184 Query: 231 -TIITVE--LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--S 285 ++ +E L DG +LL P + F + ++M F K A AG++K S Sbjct: 185 EAVLWLERYLRDGRAELLNGRP--SDVLFPSLRGEQMTRQTFWHRIKHHARVAGIDKPLS 242 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 H +R AT + GA + G + + YT A Sbjct: 243 PHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA 283 >gi|45289499|gb|AAS57783.1| Sb28 [Salmonella enterica subsp. enterica serovar Typhimurium] Length = 168 Score = 43.9 bits (102), Expect = 0.033, Method: Compositional matrix adjust. Identities = 27/100 (27%), Positives = 53/100 (53%), Gaps = 1/100 (1%) Query: 65 RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124 RK T L ++ SA + LA ++ + ++ I+ GD + + I +HIR ++ Sbjct: 55 RKNRITFTQLWRKFLASADYADLAPRTQKDYLAHEKYILAVFGDAEAKAIKPEHIRRYMD 114 Query: 125 SR-KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER 163 +R + + A +SM +F+W+ ++ YV NPC+ V++ Sbjct: 115 ARGQKSRVQANHEHSSMSRVFRWSYQRGYVPGNPCVGVDK 154 >gi|33600646|ref|NP_888206.1| integrase [Bordetella bronchiseptica RB50] gi|33568246|emb|CAE32158.1| integrase [Bordetella bronchiseptica RB50] Length = 319 Score = 43.9 bits (102), Expect = 0.033, Method: Compositional matrix adjust. Identities = 33/146 (22%), Positives = 62/146 (42%), Gaps = 7/146 (4%) Query: 107 GDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166 +F ++ KH+ + TP+ A + L+ ++ +F +AV + V NPC+ + KR Sbjct: 80 AEFAPDQVRPKHVAALKVDMADTPNMANRVLSFLKTVFVYAVEWQLVDSNPCIGI---KR 136 Query: 167 KTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226 EG R D + + + ++ + L +G R D L + + Sbjct: 137 HNEGKRKRYITDAEYAAIYHHANPRMQVIMDLLYLTGQRVGDVLAIKRSDLTEDGIVFEQ 196 Query: 227 QKTGTIITV----ELPDGFMKLLAMT 248 +KTG + V EL D ++ A+ Sbjct: 197 EKTGAKLLVRWVPELRDAVVRANALN 222 >gi|281424791|ref|ZP_06255704.1| tyrosine recombinase XerD [Prevotella oris F0302] gi|281401161|gb|EFB31992.1| tyrosine recombinase XerD [Prevotella oris F0302] Length = 307 Score = 43.9 bits (102), Expect = 0.034, Method: Compositional matrix adjust. Identities = 51/229 (22%), Positives = 82/229 (35%), Gaps = 53/229 (23%) Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK--RKTEGIRPWTKEDM--QQFKSF 185 P S + L+ +R +++ + Y+ +P +E P + + + DM Q Sbjct: 73 PRSQSRILSGIRSFYRFLLLDGYIETDPTELLESPALGQHLPEVLSTAEVDMLEQSIDLS 132 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245 EG + E L GLR S+ + L L DGF+++L Sbjct: 133 KLEGQRNLAIIEVLFSCGLRVSELVNLKLSQLY------------------LDDGFIRVL 174 Query: 246 A------MTPI----------------------GKETF-FINNDKQKMNATQFSIWFKAK 276 + PI G+E F F+N + T I K + Sbjct: 175 GKGSKERLVPISPRAIKELQLWFTDRVHLNIKPGEEDFVFLNRRGHHLTRTMILIMIKRQ 234 Query: 277 ATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 A +AG+ K S H +R AT GA + A G +++ E YT Sbjct: 235 AEEAGIKKTISPHTLRHSFATALLQGGADLRAIQAMLGHESIGTTEIYT 283 >gi|225627919|ref|ZP_03785955.1| phage integrase family site specific recombinase [Brucella ceti str. Cudo] gi|254694153|ref|ZP_05155981.1| phage integrase [Brucella abortus bv. 3 str. Tulya] gi|254702191|ref|ZP_05164019.1| phage integrase [Brucella suis bv. 5 str. 513] gi|254710513|ref|ZP_05172324.1| phage integrase [Brucella pinnipedialis B2/94] gi|254714506|ref|ZP_05176317.1| phage integrase [Brucella ceti M644/93/1] gi|254717404|ref|ZP_05179215.1| phage integrase [Brucella ceti M13/05/1] gi|256032006|ref|ZP_05445620.1| phage integrase [Brucella pinnipedialis M292/94/1] gi|256045098|ref|ZP_05447999.1| phage integrase [Brucella melitensis bv. 1 str. Rev.1] gi|256061527|ref|ZP_05451671.1| phage integrase [Brucella neotomae 5K33] gi|256114028|ref|ZP_05454805.1| phage integrase [Brucella melitensis bv. 3 str. Ether] gi|256160204|ref|ZP_05457898.1| phage integrase [Brucella ceti M490/95/1] gi|256255410|ref|ZP_05460946.1| phage integrase [Brucella ceti B1/94] gi|256369890|ref|YP_003107401.1| site-specific recombinase, phage integrase family [Brucella microti CCM 4915] gi|260169143|ref|ZP_05755954.1| site-specific recombinase, phage integrase family protein [Brucella sp. F5/99] gi|260565302|ref|ZP_05835786.1| phage integrase [Brucella melitensis bv. 1 str. 16M] gi|261214456|ref|ZP_05928737.1| integrase/recombinase [Brucella abortus bv. 3 str. Tulya] gi|261219235|ref|ZP_05933516.1| integrase/recombinase [Brucella ceti M13/05/1] gi|261222614|ref|ZP_05936895.1| integrase/recombinase [Brucella ceti B1/94] gi|261318084|ref|ZP_05957281.1| integrase/recombinase [Brucella pinnipedialis B2/94] gi|261322296|ref|ZP_05961493.1| integrase/recombinase [Brucella ceti M644/93/1] gi|261325538|ref|ZP_05964735.1| integrase/recombinase [Brucella neotomae 5K33] gi|261752763|ref|ZP_05996472.1| integrase/recombinase [Brucella suis bv. 5 str. 513] gi|261758653|ref|ZP_06002362.1| phage integrase [Brucella sp. F5/99] gi|265989118|ref|ZP_06101675.1| integrase/recombinase [Brucella pinnipedialis M292/94/1] gi|265991531|ref|ZP_06104088.1| integrase/recombinase [Brucella melitensis bv. 1 str. Rev.1] gi|265995369|ref|ZP_06107926.1| integrase/recombinase [Brucella melitensis bv. 3 str. Ether] gi|265998579|ref|ZP_06111136.1| integrase/recombinase [Brucella ceti M490/95/1] gi|294852794|ref|ZP_06793467.1| phage integrase [Brucella sp. NVSL 07-0026] gi|225617082|gb|EEH14128.1| phage integrase family site specific recombinase [Brucella ceti str. Cudo] gi|256000053|gb|ACU48452.1| site-specific recombinase, phage integrase family [Brucella microti CCM 4915] gi|260151370|gb|EEW86464.1| phage integrase [Brucella melitensis bv. 1 str. 16M] gi|260916063|gb|EEX82924.1| integrase/recombinase [Brucella abortus bv. 3 str. Tulya] gi|260921198|gb|EEX87851.1| integrase/recombinase [Brucella ceti B1/94] gi|260924324|gb|EEX90892.1| integrase/recombinase [Brucella ceti M13/05/1] gi|261294986|gb|EEX98482.1| integrase/recombinase [Brucella ceti M644/93/1] gi|261297307|gb|EEY00804.1| integrase/recombinase [Brucella pinnipedialis B2/94] gi|261301518|gb|EEY05015.1| integrase/recombinase [Brucella neotomae 5K33] gi|261738637|gb|EEY26633.1| phage integrase [Brucella sp. F5/99] gi|261742516|gb|EEY30442.1| integrase/recombinase [Brucella suis bv. 5 str. 513] gi|262553203|gb|EEZ09037.1| integrase/recombinase [Brucella ceti M490/95/1] gi|262766482|gb|EEZ12271.1| integrase/recombinase [Brucella melitensis bv. 3 str. Ether] gi|263002315|gb|EEZ14890.1| integrase/recombinase [Brucella melitensis bv. 1 str. Rev.1] gi|264661315|gb|EEZ31576.1| integrase/recombinase [Brucella pinnipedialis M292/94/1] gi|294821383|gb|EFG38382.1| phage integrase [Brucella sp. NVSL 07-0026] Length = 164 Score = 43.9 bits (102), Expect = 0.034, Method: Compositional matrix adjust. Identities = 34/139 (24%), Positives = 60/139 (43%), Gaps = 6/139 (4%) Query: 205 RCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ-- 262 RCS + + + F ++ KTG + + + ++L TP ET + + Sbjct: 21 RCSKTVFLDGEAKSVDGFELRQGKTGKRLFLPITPILSEVLEATPRQGETVLVTAYGEPF 80 Query: 263 --KMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320 K + + W + G + HG+RK I A+ GA+ ++M T G + AE Sbjct: 81 SPKSLTGRMADWTASAKLPKGF--TLHGLRKTLGKILAEGGASTRQIMDTLGHDDIAHAE 138 Query: 321 TYTKGADRIRLGIKNSRRI 339 YT+ A++ RL R+ Sbjct: 139 LYTREAEQARLATDGMSRV 157 >gi|330827985|ref|YP_004390937.1| Tyrosine recombinase XerC [Aeromonas veronii B565] gi|328803121|gb|AEB48320.1| Tyrosine recombinase XerC [Aeromonas veronii B565] Length = 325 Score = 43.9 bits (102), Expect = 0.034, Method: Compositional matrix adjust. Identities = 47/222 (21%), Positives = 93/222 (41%), Gaps = 23/222 (10%) Query: 87 LAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSGVESRKH----TPSSAIQFLTS 139 L+ ++R +++++ + + + G D+ ++ +R+ V +R H P S +++ Sbjct: 40 LSPHTRNNYQAHLEAMTAELVALGLTDWGRLEASQVRTLV-TRMHKAGLAPRSLSTKVSA 98 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRLA 195 +R W VRQ + NP + PK+ + ++M Q + E + R Sbjct: 99 LRSFCDWQVRQGRLTANPARGIVTPKQGRPLPKNLDVDEMHQLLNITDEQDPLAVRDRAI 158 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM------KLLAMTP 249 E + SGLR ++ + L+ + +K G+ V LP G M K L + P Sbjct: 159 MELMYSSGLRLAELVGINLVDLKLDDRQLKVTGKGSRERV-LPIGRMAVEWLQKWLKVRP 217 Query: 250 I----GKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAH 287 + E F+++ KQ+++A K +N H Sbjct: 218 LLAGDESEALFVSSRKQRLSARSVQARLDGWGNKQALNAHVH 259 >gi|163783234|ref|ZP_02178228.1| Phage integrase [Hydrogenivirga sp. 128-5-R1-1] gi|159881568|gb|EDP75078.1| Phage integrase [Hydrogenivirga sp. 128-5-R1-1] Length = 369 Score = 43.9 bits (102), Expect = 0.034, Method: Compositional matrix adjust. Identities = 56/247 (22%), Positives = 109/247 (44%), Gaps = 32/247 (12%) Query: 99 FDQIIR-----KSGDFDYRKITTKHIRSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQE 151 ++ IIR + GD +ITT ++ V R + +P++ +Q + ++ +FK A Sbjct: 83 YEGIIRNHFMPRFGDKKLSRITTGMLQGYVAERLSQVSPTTVLQEVVLLKEMFKHAQSWG 142 Query: 152 YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP--RLAFEFLLYSGLRCSDS 209 Y+ NP +++RP+R+ + I T E+++ F E + R+AF + +GLR + Sbjct: 143 YIKHNPAQNLQRPRREKKEIDILTPEEVE----FLLENTHEHYRVAFLTAVMTGLRAGEL 198 Query: 210 CRA---GVQHLQNNIFSIKTQKTG---------TIITVELPDGFMKLLAM----TPIGKE 253 + I+ +T G +I V++PD ++ L + P K Sbjct: 199 WGLKWDDIDWHSKQIYVRRTLWNGEFHTPKSRHSIGKVDMPDVLVEELKLWEIRCPPNKY 258 Query: 254 TFFINNDKQKMNATQFSI--WFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMAT 310 + K + + Q + +FK +AG+ S H +R +A+I AG + Sbjct: 259 NLVFPSPKGEPSEHQNVVNRYFKPALRRAGLRVVSFHSLRHTNASIRIRAGQNIKYIQRQ 318 Query: 311 YGWKTVD 317 G +++ Sbjct: 319 LGHASIN 325 >gi|330974049|gb|EGH74115.1| phage integrase family site specific recombinase [Pseudomonas syringae pv. aceris str. M302273PT] Length = 320 Score = 43.9 bits (102), Expect = 0.034, Method: Compositional matrix adjust. Identities = 53/247 (21%), Positives = 93/247 (37%), Gaps = 32/247 (12%) Query: 99 FDQIIRKSGDFDYRKITTKHI---RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAI 155 F I + D+R +T H+ R+ +E R ++ + L ++ LF + +A Sbjct: 52 FSSFIGLASADDFRLVTRSHVLAWRADLEHRGLAGATIRRKLAALASLFDHLLENNAIAG 111 Query: 156 -NPCLSVERPK-RKTEGIRPWTKEDMQQFKSFWS-------EGSQPRLAFEFLLYSGLRC 206 NP V+RPK EG P + Q K+ +G + R LLY GLR Sbjct: 112 GNPVHGVKRPKIESNEGKTPALGD--HQAKALLDAPDESTLKGLRDRAILAVLLYHGLRR 169 Query: 207 SDSCRAGVQHLQN--NIFSIKTQKTGTIITVELPDGFMKLLAMTPI--GKETFFINNDKQ 262 ++ + V +Q I +K G G ++ L + P+ G+ ++ Sbjct: 170 EEAAQLQVSDIQERRGIQHLKIHGKG---------GKVRYLPLHPVAAGRIHLYLERSGH 220 Query: 263 KMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGAT-----AHELMATYGWKTVD 317 ++ + ++ + G SA+G+ + AG H L AT +D Sbjct: 221 HLDDKKVPLFIPLRGKPTGAGVSANGIYTVVEAYAKKAGIEVAGLGVHGLRATAATNALD 280 Query: 318 QAETYTK 324 K Sbjct: 281 HEADIAK 287 >gi|117619677|ref|YP_855009.1| tyrosine recombinase XerC [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117561084|gb|ABK38032.1| tyrosine recombinase XerC [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 325 Score = 43.9 bits (102), Expect = 0.034, Method: Compositional matrix adjust. Identities = 47/222 (21%), Positives = 93/222 (41%), Gaps = 23/222 (10%) Query: 87 LAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSGVESRKH----TPSSAIQFLTS 139 L+ ++R +++++ + + + K G D+ ++ +RS V +R H P S +++ Sbjct: 40 LSPHTRSNYQAHLEAMTAELVKLGVDDWARLEASQVRSLV-TRMHKAGLAPRSLATKVSA 98 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRLA 195 +R W VRQ + NP + PK+ + ++M Q + E + R Sbjct: 99 LRSFCDWQVRQGRLVANPARGIVTPKQGRPLPKNLDVDEMYQLLNITDEQDPLAVRDRAI 158 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM------KLLAMTP 249 E + SGLR ++ + ++ + ++ G+ V LP G M K L + P Sbjct: 159 MELMYSSGLRLAELVGLNLADVKLDERQLRVTGKGSRERV-LPVGRMAVEWLHKWLKLRP 217 Query: 250 IGK----ETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAH 287 + E F++ KQ+++A K +N H Sbjct: 218 LLAGDELEALFVSKRKQRLSARSVQERLDGWGNKQALNAHVH 259 >gi|293604631|ref|ZP_06687033.1| phage integrase family site-specific recombinase [Achromobacter piechaudii ATCC 43553] gi|292816962|gb|EFF76041.1| phage integrase family site-specific recombinase [Achromobacter piechaudii ATCC 43553] Length = 322 Score = 43.9 bits (102), Expect = 0.035, Method: Compositional matrix adjust. Identities = 35/152 (23%), Positives = 69/152 (45%), Gaps = 7/152 (4%) Query: 87 LAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKW 146 +A ++R +E + DF ++ + ++ + A + LT ++++F+W Sbjct: 69 VAASTRKQYEYCASMLKEDFADFYPGQVKHGDVVEMLDQYADRQALANRMLTVLKLVFQW 128 Query: 147 AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL--AFEFLLYSGL 204 A+ + V NPC+SV+R +T R T+++ + E P L + +G Sbjct: 129 ALDRGRVEANPCVSVKRFV-QTSRDRLVTRDEYTRV----YEACPPWLQCVMDLCYLTGQ 183 Query: 205 RCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236 R D + + HL ++ + QKTG + VE Sbjct: 184 RIGDVLKIELVHLHDDGIYFEQQKTGKRLVVE 215 >gi|291550383|emb|CBL26645.1| Site-specific recombinase XerD [Ruminococcus torques L2-14] Length = 356 Score = 43.9 bits (102), Expect = 0.036, Method: Compositional matrix adjust. Identities = 39/196 (19%), Positives = 86/196 (43%), Gaps = 28/196 (14%) Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS-----Q 191 ++++R + + +++ ++ NP L VE PK + I +++ + G Q Sbjct: 120 MSALRSFYGYYFKRQIISKNPTLLVEMPKMHEKAIIRLDTDEIAMLLDYVDHGGDNLTGQ 179 Query: 192 PRLAFE-----------FLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELP 238 + FE LL +G+R S+ +Q + +NN ++ T+K G + V Sbjct: 180 RKAYFEKTKNRDLAILTLLLGTGIRVSECVGLDLQDIDFKNNGITV-TRKGGNQMVVYFG 238 Query: 239 DGFMKLLAMTPIGKETFFINNDKQK--MNATQFSIWFKAKATKAGVNKSAHGVRKFSATI 296 + L +T+ KQ ++ + +++ + + GV + V+K++ + Sbjct: 239 EEVENAL-------KTYLYTTRKQAIPLSGHENALFLSTQRKRMGVQAVENMVKKYAREV 291 Query: 297 SADAGATAHELMATYG 312 + + T H+L +TYG Sbjct: 292 TPNKKITPHKLRSTYG 307 >gi|297539666|ref|YP_003675435.1| tyrosine recombinase XerD [Methylotenera sp. 301] gi|297259013|gb|ADI30858.1| tyrosine recombinase XerD [Methylotenera sp. 301] Length = 302 Score = 43.9 bits (102), Expect = 0.036, Method: Compositional matrix adjust. Identities = 47/232 (20%), Positives = 85/232 (36%), Gaps = 53/232 (22%) Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS----F 185 P S + + SMR +++ +R ++++P + ++ PK + +E++ + Sbjct: 74 PRSISRLIASMRRFYRYLMRDNKISLDPTIQIQSPKLPRSLPKSLNEEEVIALLNAPNIV 133 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245 + G + R E L GLR S+ GV+ + V + DG +++ Sbjct: 134 EAAGLRDRAMLELLYACGLRVSELV--GVK----------------VTEVSVSDGVVRIT 175 Query: 246 A------MTPIGKE-----------------------TFFINNDKQKMNATQFSIWFKAK 276 + P+G+E F+ N + M F K Sbjct: 176 GKGSKTRLVPMGEEAVDWISRYLSDARSAILQKRLCDALFVTNRGEAMTRQAFWYLIKRY 235 Query: 277 ATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 A AG+NK S H +R AT + GA + G + + YT A Sbjct: 236 ALLAGINKHMSPHVLRHAFATHLLNHGADLRVVQMLLGHSDISTTQIYTHVA 287 >gi|298531237|ref|ZP_07018637.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1] gi|298508847|gb|EFI32753.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1] Length = 384 Score = 43.9 bits (102), Expect = 0.036, Method: Compositional matrix adjust. Identities = 53/238 (22%), Positives = 98/238 (41%), Gaps = 17/238 (7%) Query: 98 YFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEY--VAI 155 + DQI R D + + +++G P+SA + + +R +F A++ E V + Sbjct: 140 HLDQITRD----DIMAMHQERLKNGA-----APASANRLVILLRYMFNLAIQWETPGVTV 190 Query: 156 NPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA--FEFLLYSGLRCSDSCRAG 213 NP V + + R T+E++Q+ E P L L+ +G R S+ A Sbjct: 191 NPTKGVPLAEENNQRERYLTEEEVQRLCKAVKESENPLLEPIISMLILTGARKSEVLNAK 250 Query: 214 VQ--HLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPI--GKETFFINNDKQKMNATQF 269 + L+ + I K+G TV L + +++L P G E F + K + + Sbjct: 251 WEDLDLERKRWRIPYTKSGKPRTVPLSESALEVLRSVPKVEGSEYIFPSPVTGKPFNSIY 310 Query: 270 SIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 + W A+ + H +R A+ +AG +E+ G + Y+ +D Sbjct: 311 NSWNTARIKSGLEDVKIHTLRHSFASFLVNAGRNLYEVGKLLGHTQMRTTMRYSHLSD 368 >gi|163843727|ref|YP_001628131.1| integrase/recombinase [Brucella suis ATCC 23445] gi|163674450|gb|ABY38561.1| Integrase/Recombinase [Brucella suis ATCC 23445] Length = 164 Score = 43.9 bits (102), Expect = 0.036, Method: Compositional matrix adjust. Identities = 34/139 (24%), Positives = 59/139 (42%), Gaps = 6/139 (4%) Query: 205 RCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ-- 262 RCS + + F ++ KTG + + + ++L TP ET + + Sbjct: 21 RCSKTVFLDGEAKSVEGFELRQGKTGKRLLLPITPILSEVLEATPRQGETVLVTAYGEPF 80 Query: 263 --KMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320 K + + W + G + HG+RK I A+ GA+ ++M T G + AE Sbjct: 81 SPKSLTGRMADWTASAKLPKGF--TLHGLRKTLGKILAEGGASTRQIMDTLGHDDIAHAE 138 Query: 321 TYTKGADRIRLGIKNSRRI 339 YT+ A++ RL R+ Sbjct: 139 LYTREAEQARLATDGMSRV 157 >gi|283769465|ref|ZP_06342361.1| phage integrase, N-terminal SAM domain protein [Bulleidia extructa W1219] gi|283103733|gb|EFC05119.1| phage integrase, N-terminal SAM domain protein [Bulleidia extructa W1219] Length = 297 Score = 43.9 bits (102), Expect = 0.037, Method: Compositional matrix adjust. Identities = 51/194 (26%), Positives = 78/194 (40%), Gaps = 25/194 (12%) Query: 148 VRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCS 207 VR+ + LSVE K + + +T++D +Q R E + GLR S Sbjct: 100 VRKNETYLPSFLSVEEVK---QLLNSFTRDDPKQ--------ELNRTILELIYACGLRIS 148 Query: 208 DSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMK-----LLAMTPIGKE----TFF 256 + C V +Q I I + I V +P+ +K L + PI + TFF Sbjct: 149 ELCSLTVAQVQLETGILRILGKGNKERI-VPIPNQVVKDLDYYLNLIRPIWNQHKTNTFF 207 Query: 257 INNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWK 314 IN+ ++ A + K KA + G K + H +R AT AGA + G Sbjct: 208 INHLGNRITARSIQLLLKQKAMECGFQKDITPHSLRHTYATHLLQAGADLRIIQELLGHS 267 Query: 315 TVDQAETYTKGADR 328 + E YT +R Sbjct: 268 NIKTTEIYTHVQNR 281 >gi|206975126|ref|ZP_03236040.1| DNA integration/recombination/invertion protein [Bacillus cereus H3081.97] gi|217959606|ref|YP_002338158.1| DNA integration/recombination/invertion protein [Bacillus cereus AH187] gi|229138832|ref|ZP_04267413.1| DNA integration/recombination/invertion protein [Bacillus cereus BDRD-ST26] gi|206746547|gb|EDZ57940.1| DNA integration/recombination/invertion protein [Bacillus cereus H3081.97] gi|217066212|gb|ACJ80462.1| DNA integration/recombination/invertion protein [Bacillus cereus AH187] gi|228644748|gb|EEL00999.1| DNA integration/recombination/invertion protein [Bacillus cereus BDRD-ST26] Length = 369 Score = 43.9 bits (102), Expect = 0.038, Method: Compositional matrix adjust. Identities = 33/122 (27%), Positives = 57/122 (46%), Gaps = 8/122 (6%) Query: 94 SFESYFD----QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVL---FKW 146 +F SY II G K+ HI+ +S S L R+L Sbjct: 84 TFSSYSSNITYHIIPSIGMIALHKLNVIHIQKCYKSALDNGVSNNSILLLHRILKTALNL 143 Query: 147 AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRC 206 AV+Q ++ NP VE PK++ I+ WT+E++++F S+ S+ +A+ + +G+R Sbjct: 144 AVKQNIISRNPADFVEIPKKEKTSIQTWTEEEVKRF-LLHSQESRYHIAYLIAITTGMRL 202 Query: 207 SD 208 + Sbjct: 203 GE 204 >gi|325684289|gb|EGD26462.1| integrase/recombinase XerD [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 301 Score = 43.9 bits (102), Expect = 0.039, Method: Compositional matrix adjust. Identities = 47/214 (21%), Positives = 91/214 (42%), Gaps = 24/214 (11%) Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQFKSFW 186 SS + ++++ ++W VRQ+ +A++P ++ PKR+ T+ + ++Q Sbjct: 73 SSISRLVSTLSRFYQWLVRQQLIALDPMSQIDAPKREKRMPLALTEAEVGKLLEQPDLTT 132 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT---IITVE------- 236 G + R E L +G+R S++ + + ++ IK G +I V Sbjct: 133 DLGIRDRALVELLYATGIRVSEAVNLKLADVHADLQLIKVLGKGNKERLIPVSALALDWI 192 Query: 237 ---LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAK--ATKAGVNKSA--HGV 289 LP +LL GK + ++ + + T+ ++W K K +AG+ K H + Sbjct: 193 KRYLPVRDQQLLKR---GKSSDYLFLNSRGGQLTRQAVWQKIKKYCQQAGIAKDVTPHTL 249 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYT 323 R AT + GA + G + + YT Sbjct: 250 RHSFATHLLEHGADLRVVQEILGHTDISTTQIYT 283 >gi|219646794|gb|ACL30946.1| integrase [Integrating expression vector pJEB403+drrA] Length = 332 Score = 43.9 bits (102), Expect = 0.039, Method: Compositional matrix adjust. Identities = 54/222 (24%), Positives = 90/222 (40%), Gaps = 27/222 (12%) Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM-----Q 180 RKH P++ +R + AV + +A NPC +E+ + T E++ + Sbjct: 91 RKH-PTARRHAYNVLRAVMNTAVEDKLIAENPC-RIEQKAADERDVEALTPEELDIVAAE 148 Query: 181 QFKSF--------WSE---GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF--SIKTQ 227 F+ + W+ G L + +++ G+ R G + N I + KT Sbjct: 149 IFEHYRIAAYILAWTSLRFGELIELRRKDIVHDGMTMKLRVRRGASRVGNKIVVGNAKTV 208 Query: 228 KTGTIITV-----ELPDGFMKLLAMTPIGKETFFINNDK-QKMNATQFSIWFKAKATKAG 281 ++ +TV E+ MK G E F + + +++ + F+ K K G Sbjct: 209 RSKRPVTVPPHVAEMIRAHMKDRTKMNKGPEAFLVTTTQGNRLSKSAFTKSLKRGYAKIG 268 Query: 282 VNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 + H +R AT +A AGAT ELMA G T A Y Sbjct: 269 RPELRIHDLRAVGATFAAQAGATTKELMARLGHTTPRMAMKY 310 >gi|323489648|ref|ZP_08094875.1| tyrosine recombinase xerD [Planococcus donghaensis MPA1U2] gi|323396779|gb|EGA89598.1| tyrosine recombinase xerD [Planococcus donghaensis MPA1U2] Length = 300 Score = 43.9 bits (102), Expect = 0.039, Method: Compositional matrix adjust. Identities = 50/227 (22%), Positives = 94/227 (41%), Gaps = 25/227 (11%) Query: 118 HIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK--RKTEGIRPWT 175 H+R E+ K TP + + ++S+R ++ +R+ V +P + +E P+ +K I Sbjct: 60 HLRHLKETTK-TPRTVARHISSIRSFHQFMIRERIVETDPTVHLEMPQMDKKLPNILSIE 118 Query: 176 KED--MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--- 230 + D +Q + + G + + E L SG+R S+ ++ + + ++ G Sbjct: 119 EVDALIQVPATNKANGLRDQAMLELLYASGMRVSECINLDIEDVHLTMGFVRCTGKGGKE 178 Query: 231 ----------TIITVELPDGFMKLLAMTPIGKET--FFINNDKQKMNATQFSIWFKAKAT 278 T L G + L+ G++T FIN +++ F K A Sbjct: 179 RIIPLGKSALTSCQTYLEQGRIDLVKS---GEKTDALFINQRGKRLTRQGFWKLLKQHAQ 235 Query: 279 KAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 KAG+ K + H +R AT + GA + G + + YT Sbjct: 236 KAGIQKELTPHTLRHSFATHLLENGADIRAVQEMLGHADISTTQIYT 282 >gi|198277388|ref|ZP_03209919.1| hypothetical protein BACPLE_03600 [Bacteroides plebeius DSM 17135] gi|198269886|gb|EDY94156.1| hypothetical protein BACPLE_03600 [Bacteroides plebeius DSM 17135] Length = 303 Score = 43.9 bits (102), Expect = 0.040, Method: Compositional matrix adjust. Identities = 54/224 (24%), Positives = 89/224 (39%), Gaps = 28/224 (12%) Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS-- 187 P S + L+ +R F++ + ++Y+ +P +E P+ T E++ + Sbjct: 71 PRSQARILSGIRSFFRFLLLEDYIQQDPSELLESPQIGKHLPDVLTVEEIDRLIGSIDRS 130 Query: 188 --EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-----------IIT 234 EG + R E L GLR S+ C + L IK + G+ I Sbjct: 131 TREGQRNRAILETLYSCGLRVSELCNLKLSDLYLKEKFIKVEGKGSKQRLVPISPRAIHE 190 Query: 235 VEL--PD---GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAH 287 +EL PD G +K P ++ FI+ + ++ K A + G+ K S H Sbjct: 191 LELYFPDRNEGLIK-----PGYEDFVFISRFGKNISRIMVFHIIKELAEQIGLKKTISPH 245 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 R AT + GA + G +++ E YT DR RL Sbjct: 246 TFRHSFATHLLEGGANLRAIQCMLGHESIGTTEIYTH-LDRSRL 288 >gi|261218687|ref|ZP_05932968.1| conserved hypothetical protein [Brucella ceti M13/05/1] gi|261321815|ref|ZP_05961012.1| conserved hypothetical protein [Brucella ceti M644/93/1] gi|260923776|gb|EEX90344.1| conserved hypothetical protein [Brucella ceti M13/05/1] gi|261294505|gb|EEX98001.1| conserved hypothetical protein [Brucella ceti M644/93/1] Length = 323 Score = 43.9 bits (102), Expect = 0.040, Method: Compositional matrix adjust. Identities = 57/266 (21%), Positives = 102/266 (38%), Gaps = 15/266 (5%) Query: 62 NSPRKKPTTLKW--LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD-----FDYRKI 114 N R P K+ +I+ Y+ S + LA +++ ++ + D+I +K GD FD + Sbjct: 28 NDSRVIPDASKFRAVITAYKSSHDYQKLADSTKRNWNGWLDRIGKKFGDLSIAQFDLPQK 87 Query: 115 TTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRP 173 IR P +A + + + +AV ++ NPC +++ + Sbjct: 88 IRPVIRKWRGEFADKPRTADYGMQVLSRVLSYAVDPLGKISQNPCEGIKQLYKNDRAAII 147 Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII 233 WT +D+ + K+ S + A + ++GLR D R H+ +N + T K+ Sbjct: 148 WTDQDIARLKTKCS--PEVAWAVDLAAHTGLRAGDLLRLSWSHITDNAIILPTGKSRHTK 205 Query: 234 TVELP--DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWF---KAKATKAGVNKSAHG 288 +P LL P N K F F + +A + H Sbjct: 206 EAVIPLYAELRALLQTIPRRSPIVLTNTRKAPWTVNGFGSSFSDCREEAKLGDRDLHFHD 265 Query: 289 VRKFSATISADAGATAHELMATYGWK 314 R +AT AG + + GW+ Sbjct: 266 FRGTAATKFYIAGLSERVIAEIMGWE 291 >gi|255036556|ref|YP_003087177.1| tyrosine recombinase XerD [Dyadobacter fermentans DSM 18053] gi|254949312|gb|ACT94012.1| tyrosine recombinase XerD [Dyadobacter fermentans DSM 18053] Length = 298 Score = 43.9 bits (102), Expect = 0.040, Method: Compositional matrix adjust. Identities = 51/230 (22%), Positives = 88/230 (38%), Gaps = 58/230 (25%) Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK--RKTEGIRPWTKEDMQQFKSFWS-- 187 S + L+ ++ FK+ + + + +P +E P+ RK + + E+++ S Sbjct: 71 SQARMLSGIKAFFKYLLLENEITEDPTELLESPRLPRKLPDVLSY--EEIETMLSAIDHS 128 Query: 188 --EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245 EG++ R E L SGLR S+ L N F I GF+++L Sbjct: 129 TPEGTRNRAIMEVLYSSGLRVSELTDL---QLTNCHFDI---------------GFLRIL 170 Query: 246 A------MTPIGKETF------------------------FINNDKQKMNATQFSIWFKA 275 + PIG+E F+N +++ + K Sbjct: 171 GKGDKMRLVPIGREAIKYTQIYLDHIRNDIAPQKGSEDIVFLNRRGGQLSRVMIFLMIKD 230 Query: 276 KATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 A KAG++K S H R AT + GA+ + G +++ E YT Sbjct: 231 TAEKAGIHKNVSPHTFRHSFATHLIEGGASLRAVQEMLGHESITTTEIYT 280 >gi|162452703|ref|YP_001615070.1| site-specific recombinase [Sorangium cellulosum 'So ce 56'] gi|161163285|emb|CAN94590.1| site-specific recombinase [Sorangium cellulosum 'So ce 56'] Length = 323 Score = 43.5 bits (101), Expect = 0.042, Method: Compositional matrix adjust. Identities = 46/215 (21%), Positives = 89/215 (41%), Gaps = 16/215 (7%) Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 + SSA + L+++R ++ +R+ + +PC VERP+ + + +++ + Sbjct: 95 SASSAARHLSAVRGFVRFLLRERRIERDPCALVERPRVGRRLPKVLSFDEIALLIEAPEQ 154 Query: 189 GS----QPRLAFEFLLYSGLRCSDSCR---AGVQHLQNNIFSIKTQKTGTIITVELP--- 238 G+ + R + +GLR S+ R A + + + ++ ++ + P Sbjct: 155 GTFKGLRDRAMLHVMYAAGLRVSEVVRLKLADIDRRKGIVMALGKGGKRRLVPLGEPALA 214 Query: 239 --DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIW--FKAKATKAGVNK--SAHGVRKF 292 D +++L A P T + + T+ ++W A G+ K S H +R Sbjct: 215 AIDAYLELRATHPRSAATQVLFLSPRGGPLTRQAVWKLLGGYARAVGIAKPSSPHKLRHS 274 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 AT + GA + A G V E YT AD Sbjct: 275 FATHLLEGGADLRSVQALLGHANVVTTEIYTHLAD 309 >gi|254704264|ref|ZP_05166092.1| Phage integrase [Brucella suis bv. 3 str. 686] gi|261754933|ref|ZP_05998642.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686] gi|261744686|gb|EEY32612.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686] Length = 341 Score = 43.5 bits (101), Expect = 0.042, Method: Compositional matrix adjust. Identities = 60/268 (22%), Positives = 104/268 (38%), Gaps = 19/268 (7%) Query: 62 NSPRKKPTTLKW--LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD-----FDY-RK 113 N R P K+ +I+ Y+ S + LA +++ ++ + D+I +K GD FD +K Sbjct: 46 NDSRVIPDASKFRAVITAYKSSHDYQKLADSTKRNWNGWLDRIGKKFGDLSIAQFDLPQK 105 Query: 114 I--TTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171 I + R + T +Q L+ RVL ++ NPC +++ + Sbjct: 106 IRPVIRKWRGEFADKPRTADYGMQVLS--RVLSYAVDPLGKISQNPCEGIKQLYKNDRAA 163 Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231 WT +D+ + K+ S + A + ++GLR D R H+ +N + T K+ Sbjct: 164 IIWTDQDIARLKTKCS--PEVAWAVDLAAHAGLRAGDLLRLSWSHITDNAIILPTGKSRH 221 Query: 232 IITVELP--DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWF---KAKATKAGVNKSA 286 +P LL P N K F F + +A + Sbjct: 222 TKEAVIPLYAELRALLQTIPRRSPIVLTNTRKAPWTVNGFGSSFSDCREEAKLGDRDLHF 281 Query: 287 HGVRKFSATISADAGATAHELMATYGWK 314 H R +AT AG + + GW+ Sbjct: 282 HDFRGTAATKFYIAGLSERVIAEIMGWE 309 >gi|320321214|gb|EFW77351.1| phage integrase family site specific recombinase [Pseudomonas syringae pv. glycinea str. B076] Length = 320 Score = 43.5 bits (101), Expect = 0.043, Method: Compositional matrix adjust. Identities = 54/248 (21%), Positives = 95/248 (38%), Gaps = 34/248 (13%) Query: 99 FDQIIRKSGDFDYRKITTKHI---RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAI 155 F I + D+R++T H+ R+ +E R ++ + L ++ LF + VA Sbjct: 52 FSSFIGLASADDFRQVTRSHVLAWRADLEQRGLAGATIRRKLAALASLFDHLLDNNAVAG 111 Query: 156 -NPCLSVERPK-RKTEGIRPWTKEDMQQFKSFWS-------EGSQPRLAFEFLLYSGLRC 206 NP V+RP+ EG P + Q K+ +G + R LLY GLR Sbjct: 112 GNPVHGVKRPRIESNEGKTPALGD--HQAKALLEAPDESTLKGRRDRAMLAVLLYHGLRR 169 Query: 207 SDSCRAGVQHLQN--NIFSIKTQKTGTIITVELPDGFMKLLAMTPI--GKETFFINNDKQ 262 ++ + V +Q I +K G G ++ L + P+ G+ ++ Sbjct: 170 EEAAQLQVSDIQERRGIQHLKIHGKG---------GKVRYLPLHPVAAGRIHLYLERSGH 220 Query: 263 KMNATQFSIWFKAKATKAGVNKSAHGVRKF------SATISADAGATAHELMATYGWKTV 316 ++ + ++ + G SA+G+ A I D G H L AT + Sbjct: 221 HLDDKKVPLFISLRGKSTGAGVSANGIYTVVEAYAKKAGIEVD-GLGVHGLRATAATNAL 279 Query: 317 DQAETYTK 324 + K Sbjct: 280 EHEADIAK 287 >gi|297543544|ref|YP_003675846.1| integrase family protein [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296841319|gb|ADH59835.1| integrase family protein [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 373 Score = 43.5 bits (101), Expect = 0.043, Method: Compositional matrix adjust. Identities = 38/167 (22%), Positives = 76/167 (45%), Gaps = 8/167 (4%) Query: 48 MSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKS 106 ++ + K E+I + TL+ I+E+ K A + IS +S + II Sbjct: 44 LAEIIAKIEKNEFIEPSK---ITLQQFINEWLKIYGEPKWAPKTLISNKSLINNYIIPNL 100 Query: 107 GDFDYRKITTKHIRS--GVESRKHTPSSAIQFLTSM-RVLFKWAVRQEYVAINPCLSVER 163 G + +K+ I+ K ++ + ++ + + K+AV+ +Y+A NPC VE Sbjct: 101 GHIELQKLKPVEIQKFYNFLKEKQLSNTTVNYVHKLLNQVLKFAVKWQYIAKNPCELVEA 160 Query: 164 PKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSC 210 PK+ + W E +++ K + + + + L++GLR + C Sbjct: 161 PKKDKKEFVTWNFEHVKKAKKIFKD-TPIYIHVMIALHTGLRLGEIC 206 >gi|256044630|ref|ZP_05447534.1| phage-related integrase [Brucella melitensis bv. 1 str. Rev.1] gi|265991056|ref|ZP_06103613.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. Rev.1] gi|263001840|gb|EEZ14415.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. Rev.1] Length = 341 Score = 43.5 bits (101), Expect = 0.043, Method: Compositional matrix adjust. Identities = 57/266 (21%), Positives = 102/266 (38%), Gaps = 15/266 (5%) Query: 62 NSPRKKPTTLKW--LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD-----FDYRKI 114 N R P K+ +I+ Y+ S + LA +++ ++ + D+I +K GD FD + Sbjct: 46 NDSRVIPDASKFRAVITAYKSSHDYQKLADSTKRNWNGWLDRIGKKFGDLSITQFDLPQK 105 Query: 115 TTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRP 173 IR P +A + + + +AV ++ NPC +++ + Sbjct: 106 IRPVIRKWRGEFADKPRTADYGMQVLSRVLSYAVDPLGKISQNPCEGIKQLYKNDRAAII 165 Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII 233 WT +D+ + K+ S + A + ++GLR D R H+ +N + T K+ Sbjct: 166 WTDQDIARLKTKCS--PEVAWAVDLAAHTGLRAGDLLRLSWSHITDNAIILPTGKSRHTK 223 Query: 234 TVELP--DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWF---KAKATKAGVNKSAHG 288 +P LL P N K F F + +A + H Sbjct: 224 EAVIPLYAELRALLQTIPRRSPIVLTNTRKAPWTVNGFGSSFSDCREEAKLGDRDLHFHD 283 Query: 289 VRKFSATISADAGATAHELMATYGWK 314 R +AT AG + + GW+ Sbjct: 284 FRGTAATKFYIAGLSERVIAEIMGWE 309 >gi|218442243|ref|YP_002380571.1| integrase [Cyanothece sp. PCC 7424] gi|218175384|gb|ACK74114.1| integrase family protein [Cyanothece sp. PCC 7424] Length = 289 Score = 43.5 bits (101), Expect = 0.043, Method: Compositional matrix adjust. Identities = 54/207 (26%), Positives = 88/207 (42%), Gaps = 19/207 (9%) Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK-TEGIRPWTKEDMQQFKSFWSE 188 PSS + +++ L + + + N ++++ PK K T R +E++ + + Sbjct: 73 PSSQGTAMAAIKSLLSFGHQIGVLPTNVGIALKSPKVKDTLNERILNEEEVMTMIANEPD 132 Query: 189 GSQPRLAFEFLLYSGLRCSDSC-------RAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241 + R+ L GLR S+ C ++ Q Q +F K G TV LP G Sbjct: 133 -ERNRVLLRLLYAGGLRVSELCALKWKDLKSRNQSGQVTVFG----KGGKTRTVLLPSGV 187 Query: 242 MKLLAMT---PIGKETFFINN-DKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSAT 295 + L G + F + ++ TQ KA A++AG+ N S H +R A+ Sbjct: 188 WQELCQIRGKSRGADPVFPSRMGGGHLDRTQVYRIVKAAASRAGIEGNVSPHWLRHAHAS 247 Query: 296 ISADAGATAHELMATYGWKTVDQAETY 322 S D GA H + AT G +V E Y Sbjct: 248 HSLDRGAPLHLVQATLGHSSVATTERY 274 >gi|326381298|ref|ZP_08202992.1| phage integrase family protein [Gordonia neofelifaecis NRRL B-59395] gi|326199545|gb|EGD56725.1| phage integrase family protein [Gordonia neofelifaecis NRRL B-59395] Length = 385 Score = 43.5 bits (101), Expect = 0.044, Method: Compositional matrix adjust. Identities = 55/217 (25%), Positives = 94/217 (43%), Gaps = 30/217 (13%) Query: 11 VTKERTRHGKIIYYFR-------KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS 63 +T+ + ++G++ Y FR G R R YP + Y T R Y+ Sbjct: 14 ITRRKAKNGRVSYEFRADVGVKPDGSRDRRRFTYPTKKEAQAEYRRITTEVAAGR-YVGR 72 Query: 64 PRKKPTTLKWLISEYRKSAHWGSLAV--NSRISFESYFDQIIRKSGDFDYRKITTKHIR- 120 R ++E+ ++ G V N+ ++ I+R G + +++T HI Sbjct: 73 SR-------VTVAEHVEAWLAGKRDVRPNTLRNYTDAAKPIVRDLGGLELQRLTKAHIDK 125 Query: 121 --SGV---ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK---TEGIR 172 G+ + R ++ SA L +R + K A RQ ++ +P VE PK K E + Sbjct: 126 FLGGLTRRDGRPYSTDSARLVLAVLRQVTKDAHRQGIISRDPSEFVEPPKAKRVAAENLD 185 Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLL-YSGLRCSD 208 WT+E+ F+ +E R+A +LL GLR S+ Sbjct: 186 VWTREEANLFRKHTAED---RMAACWLLTLCGLRRSE 219 >gi|23501849|ref|NP_697976.1| phage integrase family site specific recombinase [Brucella suis 1330] gi|62289895|ref|YP_221688.1| phage integrase family site specific recombinase [Brucella abortus bv. 1 str. 9-941] gi|82699825|ref|YP_414399.1| phage integrase [Brucella melitensis biovar Abortus 2308] gi|161618919|ref|YP_001592806.1| hypothetical protein BCAN_A0980 [Brucella canis ATCC 23365] gi|163843233|ref|YP_001627637.1| hypothetical protein BSUIS_A1008 [Brucella suis ATCC 23445] gi|189024139|ref|YP_001934907.1| Phage integrase [Brucella abortus S19] gi|225627444|ref|ZP_03785481.1| phage integrase family site specific recombinase [Brucella ceti str. Cudo] gi|237815396|ref|ZP_04594394.1| phage integrase family site specific recombinase [Brucella abortus str. 2308 A] gi|254697338|ref|ZP_05159166.1| Phage integrase [Brucella abortus bv. 2 str. 86/8/59] gi|254706834|ref|ZP_05168662.1| Phage integrase [Brucella pinnipedialis M163/99/10] gi|254730236|ref|ZP_05188814.1| Phage integrase [Brucella abortus bv. 4 str. 292] gi|256061062|ref|ZP_05451218.1| Phage integrase [Brucella neotomae 5K33] gi|256159686|ref|ZP_05457439.1| Phage integrase [Brucella ceti M490/95/1] gi|256254954|ref|ZP_05460490.1| Phage integrase [Brucella ceti B1/94] gi|260168683|ref|ZP_05755494.1| Phage integrase [Brucella sp. F5/99] gi|260545355|ref|ZP_05821096.1| phage integrase [Brucella abortus NCTC 8038] gi|260566487|ref|ZP_05836957.1| phage integrase [Brucella suis bv. 4 str. 40] gi|260757928|ref|ZP_05870276.1| conserved hypothetical protein [Brucella abortus bv. 4 str. 292] gi|260761751|ref|ZP_05874094.1| conserved hypothetical protein [Brucella abortus bv. 2 str. 86/8/59] gi|261222140|ref|ZP_05936421.1| conserved hypothetical protein [Brucella ceti B1/94] gi|261314300|ref|ZP_05953497.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10] gi|261325065|ref|ZP_05964262.1| conserved hypothetical protein [Brucella neotomae 5K33] gi|261758160|ref|ZP_06001869.1| phage integrase [Brucella sp. F5/99] gi|265998104|ref|ZP_06110661.1| conserved hypothetical protein [Brucella ceti M490/95/1] gi|23347786|gb|AAN29891.1| site-specific recombinase, phage integrase family [Brucella suis 1330] gi|62196027|gb|AAX74327.1| site-specific recombinase, phage integrase family [Brucella abortus bv. 1 str. 9-941] gi|82615926|emb|CAJ10939.1| Phage integrase [Brucella melitensis biovar Abortus 2308] gi|161335730|gb|ABX62035.1| Hypothetical protein BCAN_A0980 [Brucella canis ATCC 23365] gi|163673956|gb|ABY38067.1| Hypothetical protein BSUIS_A1008 [Brucella suis ATCC 23445] gi|189019711|gb|ACD72433.1| Phage integrase [Brucella abortus S19] gi|225617449|gb|EEH14494.1| phage integrase family site specific recombinase [Brucella ceti str. Cudo] gi|237790233|gb|EEP64443.1| phage integrase family site specific recombinase [Brucella abortus str. 2308 A] gi|260096762|gb|EEW80637.1| phage integrase [Brucella abortus NCTC 8038] gi|260156005|gb|EEW91085.1| phage integrase [Brucella suis bv. 4 str. 40] gi|260668246|gb|EEX55186.1| conserved hypothetical protein [Brucella abortus bv. 4 str. 292] gi|260672183|gb|EEX59004.1| conserved hypothetical protein [Brucella abortus bv. 2 str. 86/8/59] gi|260920724|gb|EEX87377.1| conserved hypothetical protein [Brucella ceti B1/94] gi|261301045|gb|EEY04542.1| conserved hypothetical protein [Brucella neotomae 5K33] gi|261303326|gb|EEY06823.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10] gi|261738144|gb|EEY26140.1| phage integrase [Brucella sp. F5/99] gi|262552572|gb|EEZ08562.1| conserved hypothetical protein [Brucella ceti M490/95/1] Length = 341 Score = 43.5 bits (101), Expect = 0.044, Method: Compositional matrix adjust. Identities = 60/268 (22%), Positives = 104/268 (38%), Gaps = 19/268 (7%) Query: 62 NSPRKKPTTLKW--LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD-----FDY-RK 113 N R P K+ +I+ Y+ S + LA +++ ++ + D+I +K GD FD +K Sbjct: 46 NDSRVIPDASKFRAVITAYKSSHDYQKLADSTKRNWNGWLDRIGKKFGDLSIAQFDLPQK 105 Query: 114 I--TTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171 I + R + T +Q L+ RVL ++ NPC +++ + Sbjct: 106 IRPVIRKWRGEFADKPRTADYGMQVLS--RVLSYAVDPLGKISQNPCEGIKQLYKNDRAA 163 Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231 WT +D+ + K+ S + A + ++GLR D R H+ +N + T K+ Sbjct: 164 IIWTDQDIARLKTKCS--PEVAWAVDLAAHTGLRAGDLLRLSWSHITDNAIILPTGKSRH 221 Query: 232 IITVELP--DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWF---KAKATKAGVNKSA 286 +P LL P N K F F + +A + Sbjct: 222 TKEAVIPLYAELRALLQTIPRRSPIVLTNTRKAPWTVNGFGSSFSDCREEAKLGDRDLHF 281 Query: 287 HGVRKFSATISADAGATAHELMATYGWK 314 H R +AT AG + + GW+ Sbjct: 282 HDFRGTAATKFYIAGLSERVIAEIMGWE 309 >gi|227431702|ref|ZP_03913732.1| site-specific recombinase XerD [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227352526|gb|EEJ42722.1| site-specific recombinase XerD [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 298 Score = 43.5 bits (101), Expect = 0.045, Method: Compositional matrix adjust. Identities = 57/237 (24%), Positives = 94/237 (39%), Gaps = 30/237 (12%) Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-- 188 SS I+ +T++R F + VR++ VA NP V PK+ + E++ + E Sbjct: 71 SSVIRMVTTLRNFFGYLVREKVVAHNPMNDVRPPKKAEHLPAVLSIEEIDRLLQAPIEDT 130 Query: 189 --GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246 G + R E + +GLR S+ + L + I+T G + +P G + + Sbjct: 131 PLGLRNRTLIEVMYATGLRVSELVNLKMSDLHLQLGLIQTLGKGDKERI-IPIGEIAIDW 189 Query: 247 MTPIGKET-----------FFINNDKQKMNATQFSIW--FKAKATKAGVNK--SAHGVRK 291 +T E+ + ND+ + Q IW K T AG+ K S H +R Sbjct: 190 LTRYFNESRIVLLKDKESPYVFLNDRGNQISRQ-GIWKIIKKLVTTAGITKDVSPHTLRH 248 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348 AT + GA + G + + YT + +R+S V D P Sbjct: 249 SFATHILENGADLRIVQELLGHADISTTQIYTHIS---------KKRLSEVYDEYHP 296 >gi|77918237|ref|YP_356052.1| site-specific recombinase [Pelobacter carbinolicus DSM 2380] gi|77544320|gb|ABA87882.1| site-specific recombinase [Pelobacter carbinolicus DSM 2380] Length = 332 Score = 43.5 bits (101), Expect = 0.045, Method: Compositional matrix adjust. Identities = 46/202 (22%), Positives = 85/202 (42%), Gaps = 15/202 (7%) Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP---- 192 L+++R F++ VRQ +A++P +V PKR+ + T +++ ++G +P Sbjct: 111 LSAVRSFFRYLVRQGELAVSPAETVATPKREQYLPKVLTVDEVFALIK-AADGDEPLTVR 169 Query: 193 -RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT---IITVELP--DGFMKLLA 246 R E SGLR + V H+ ++ + G I+ + P + LA Sbjct: 170 DRAILELFYSSGLRVGELEGLDVGHVDLRDGLVRVRGKGDKERIVPMGRPARQALGRYLA 229 Query: 247 M--TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADAGA 302 P ++ F+N ++++ K AG+ K A H +R AT D GA Sbjct: 230 ERGVPDREQPLFLNYRGGRLSSRSIERNLKKWLLCAGILKDASPHALRHTFATHLLDGGA 289 Query: 303 TAHELMATYGWKTVDQAETYTK 324 + G ++ + YT+ Sbjct: 290 DLRAIQELLGHASLSTTQKYTQ 311 >gi|225570002|ref|ZP_03779027.1| hypothetical protein CLOHYLEM_06097 [Clostridium hylemonae DSM 15053] gi|225161472|gb|EEG74091.1| hypothetical protein CLOHYLEM_06097 [Clostridium hylemonae DSM 15053] Length = 384 Score = 43.5 bits (101), Expect = 0.047, Method: Compositional matrix adjust. Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 2/84 (2%) Query: 127 KHTPSSAIQFLTS-MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP-WTKEDMQQFKS 184 KH S+ ++ + + + +F +AVR + NPCL+ +K G + W E+ F Sbjct: 142 KHYSSTYLKAMNNQLSTVFNYAVRYYNLPSNPCLAAGSMGKKQAGQKTFWKPEEFHIFLE 201 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSD 208 ++SE + L F L Y+G+R + Sbjct: 202 YFSENMEMYLIFSLLYYTGVRIGE 225 >gi|52079925|ref|YP_078716.1| lambda integrase-like, N-terminal,DNA breaking-rejoining enzyme, catalytic core [Bacillus licheniformis ATCC 14580] gi|52785296|ref|YP_091125.1| hypothetical protein BLi01531 [Bacillus licheniformis ATCC 14580] gi|52003136|gb|AAU23078.1| Hypothetical Lambda integrase-like, N-terminal,DNA breaking-rejoining enzyme, catalytic core [Bacillus licheniformis ATCC 14580] gi|52347798|gb|AAU40432.1| putative protein [Bacillus licheniformis ATCC 14580] Length = 352 Score = 43.5 bits (101), Expect = 0.047, Method: Compositional matrix adjust. Identities = 50/215 (23%), Positives = 85/215 (39%), Gaps = 24/215 (11%) Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 +P A L +MR +F + +++ ++ NP + + K+ I+ + E+M+Q + Sbjct: 106 SPKYANDHLKTMRAVFTFCIKENMISENPFQKINKVKQPEPVIQILSVEEMKQL----LK 161 Query: 189 GSQPRLAFEFLLYSGLRC--SDSCRAG---VQHLQNNIFS-----IKTQKTGTII--TVE 236 R EF Y + C + CR G ++N F ++ QKT T + Sbjct: 162 TPNKRKFSEFRDYVVMMCLINSMCRIGEIVTLEIENINFELSYIILEAQKTKTRKGRMIP 221 Query: 237 LPDGFMKLLAMTPIGKETF------FINNDKQKMNATQFSIWFKAKATKAGVNKSAHG-- 288 L M+LL + F FI + ++ F A +AG+NK H Sbjct: 222 LDKNTMQLLKKLLLRNTRFKPSKYVFITEEGTRLTTDNFRKRLADYAHQAGINKRVHPHL 281 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 R +A++ AG L G K + YT Sbjct: 282 FRHTAASMFLQAGGDLRHLQTIIGHKDLRMVLRYT 316 >gi|237738086|ref|ZP_04568567.1| conserved hypothetical protein [Fusobacterium mortiferum ATCC 9817] gi|229419966|gb|EEO35013.1| conserved hypothetical protein [Fusobacterium mortiferum ATCC 9817] Length = 353 Score = 43.5 bits (101), Expect = 0.049, Method: Compositional matrix adjust. Identities = 63/257 (24%), Positives = 101/257 (39%), Gaps = 56/257 (21%) Query: 121 SGVESRKHTPSSAIQFLT---SMRVLFKWAVRQEYVAINPCLSV-ERPKRKTEGIRPWTK 176 SGV S K+TP S T + +F +AV+ + NPC K+K E + WT Sbjct: 113 SGV-SIKNTPYSPTYLKTINNQLTAIFNYAVKYHNMKENPCHKAGSMGKKKAEEMIIWTP 171 Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSI---------- 224 E+ ++F F + F L ++G+R + ++ L+N SI Sbjct: 172 EEFEKFSQFIKNKMPNYVGFNILFWTGIRIGELLALTLKDIDLRNKTISISKSYQRLEGE 231 Query: 225 ------KTQKTGTIIT-----VELPDGFMKLLA-------MTPIGKETFFINNDKQKMNA 266 KT K+ ++T VEL + ++K+L + P K F ND Sbjct: 232 DVITAPKTTKSKRVVTIPDSVVELLERYLKMLYKPSKTMRLFPYTKHLF--END------ 283 Query: 267 TQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQ-----AE 320 + + KAG+ K H +R A+ + G + G + ++ A Sbjct: 284 ------LRIYSEKAGLKKIRIHDLRHSHASYLFNNGVDILTIAKRLGHENIETTLGIYAH 337 Query: 321 TYTKGADRIRLGIKNSR 337 TYT AD L I N + Sbjct: 338 TYT-SADEKLLKILNKK 353 >gi|62290365|ref|YP_222158.1| phage integrase family site specific recombinase [Brucella abortus bv. 1 str. 9-941] gi|82700287|ref|YP_414861.1| phage integrase [Brucella melitensis biovar Abortus 2308] gi|237815868|ref|ZP_04594865.1| phage integrase family site specific recombinase [Brucella abortus str. 2308 A] gi|254689663|ref|ZP_05152917.1| Phage integrase [Brucella abortus bv. 6 str. 870] gi|254697806|ref|ZP_05159634.1| Phage integrase [Brucella abortus bv. 2 str. 86/8/59] gi|254730695|ref|ZP_05189273.1| Phage integrase [Brucella abortus bv. 4 str. 292] gi|256257914|ref|ZP_05463450.1| Phage integrase [Brucella abortus bv. 9 str. C68] gi|260546903|ref|ZP_05822642.1| phage integrase [Brucella abortus NCTC 8038] gi|260755194|ref|ZP_05867542.1| integrase/recombinase [Brucella abortus bv. 6 str. 870] gi|260758413|ref|ZP_05870761.1| integrase/recombinase [Brucella abortus bv. 4 str. 292] gi|260762239|ref|ZP_05874582.1| integrase/recombinase [Brucella abortus bv. 2 str. 86/8/59] gi|260884210|ref|ZP_05895824.1| integrase/recombinase [Brucella abortus bv. 9 str. C68] gi|297248750|ref|ZP_06932468.1| phage integrase [Brucella abortus bv. 5 str. B3196] gi|62196497|gb|AAX74797.1| site-specific recombinase, phage integrase family [Brucella abortus bv. 1 str. 9-941] gi|82616388|emb|CAJ11449.1| Phage integrase [Brucella melitensis biovar Abortus 2308] gi|237789166|gb|EEP63377.1| phage integrase family site specific recombinase [Brucella abortus str. 2308 A] gi|260095953|gb|EEW79830.1| phage integrase [Brucella abortus NCTC 8038] gi|260668731|gb|EEX55671.1| integrase/recombinase [Brucella abortus bv. 4 str. 292] gi|260672671|gb|EEX59492.1| integrase/recombinase [Brucella abortus bv. 2 str. 86/8/59] gi|260675302|gb|EEX62123.1| integrase/recombinase [Brucella abortus bv. 6 str. 870] gi|260873738|gb|EEX80807.1| integrase/recombinase [Brucella abortus bv. 9 str. C68] gi|297175919|gb|EFH35266.1| phage integrase [Brucella abortus bv. 5 str. B3196] Length = 164 Score = 43.5 bits (101), Expect = 0.049, Method: Compositional matrix adjust. Identities = 33/137 (24%), Positives = 59/137 (43%), Gaps = 2/137 (1%) Query: 205 RCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM 264 RCS + + + F ++ KTG + + + ++L TP ET + + Sbjct: 21 RCSKTVFLDGEAKSVDGFELRQGKTGKRLFLPITPILSEVLEATPRQGETVLVTAYGEPF 80 Query: 265 NATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 + + A + K + HG+RK I A+ GA+ ++M T G + AE Y Sbjct: 81 SPKSLTGRMVDWTASAKLPKGFTLHGLRKTLGKILAEGGASTRQIMDTLGHDDIAHAELY 140 Query: 323 TKGADRIRLGIKNSRRI 339 T+ A++ RL R+ Sbjct: 141 TREAEQARLATDGMSRV 157 >gi|260893825|ref|YP_003239922.1| integrase family protein [Ammonifex degensii KC4] gi|260865966|gb|ACX53072.1| integrase family protein [Ammonifex degensii KC4] Length = 315 Score = 43.5 bits (101), Expect = 0.050, Method: Compositional matrix adjust. Identities = 45/191 (23%), Positives = 83/191 (43%), Gaps = 22/191 (11%) Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGI-RPWTKEDMQQF------KSFWSEGSQP 192 +++ F W VR+ Y+ NP ++ KR+ +G RP + E +Q+ KSF G + Sbjct: 86 LKLFFAWCVREGYLPANPVDGIK--KRREDGTPRPVSLEAVQKLLTACDRKSF--TGLRD 141 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-------KTQKTGT-IITVELPDGFMKL 244 F L +G+R ++ + +H + KT+ T +I+ + +L Sbjct: 142 YALILFQLDTGVRPGEALKLLPEHFNLRSLEVYIPAQVSKTRAARTVVISPQTARAVQRL 201 Query: 245 LAMTPIG---KETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAG 301 LA+ P K F + Q M + ++ + +AGV + + +R +AT G Sbjct: 202 LAVRPAAWGSKAPVFCSETGQPMQVSSWTHRLALISRRAGVKVTPYQLRHTAATELLRGG 261 Query: 302 ATAHELMATYG 312 A+A + G Sbjct: 262 ASAFAVARQLG 272 >gi|330752024|emb|CBL80536.1| tyrosine recombinase [uncultured Flavobacteria bacterium] Length = 323 Score = 43.5 bits (101), Expect = 0.051, Method: Compositional matrix adjust. Identities = 49/217 (22%), Positives = 84/217 (38%), Gaps = 18/217 (8%) Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK--RKTEGIRPWTKED--MQ 180 +++ P S + ++ ++ F + V +EY NP +E PK RK I + D + Sbjct: 89 AKELNPRSQSRIISGLKGFFNYLVFEEYRTTNPLDLIESPKIGRKLPDILSIEEIDAIIS 148 Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT--------I 232 +G + R E L GLR S+ + L + IK G Sbjct: 149 TIDLTKPQGERNRGIIEVLYGCGLRVSELINLKISDLFFDEGFIKVTGKGNKQRFVPIGS 208 Query: 233 ITVELPDGFMKLL----AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SA 286 +T++ D + + + P ++T F+N + K KAG++K S Sbjct: 209 LTIKFIDIYRNEIRVHQVIKPNAQDTLFLNRRGNGLTRAMIFHIVKELTEKAGIHKKISP 268 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 H R AT + GA + G +++ E YT Sbjct: 269 HTFRHSFATHLLENGADLRAIQQMLGHESITTTEIYT 305 >gi|225852471|ref|YP_002732704.1| phage-related integrase [Brucella melitensis ATCC 23457] gi|256264035|ref|ZP_05466567.1| phage integrase [Brucella melitensis bv. 2 str. 63/9] gi|225640836|gb|ACO00750.1| phage-related integrase [Brucella melitensis ATCC 23457] gi|263094221|gb|EEZ18098.1| phage integrase [Brucella melitensis bv. 2 str. 63/9] gi|326408987|gb|ADZ66052.1| phage-related integrase [Brucella melitensis M28] Length = 341 Score = 43.5 bits (101), Expect = 0.051, Method: Compositional matrix adjust. Identities = 57/266 (21%), Positives = 102/266 (38%), Gaps = 15/266 (5%) Query: 62 NSPRKKPTTLKW--LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD-----FDYRKI 114 N R P K+ +I+ Y+ S + LA +++ ++ + D+I +K GD FD + Sbjct: 46 NDSRVIPDASKFRAVITAYKSSHDYQKLADSTKRNWNGWLDRIGKKFGDLSIAQFDLPQK 105 Query: 115 TTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRP 173 IR P +A + + + +AV ++ NPC +++ + Sbjct: 106 IRPVIRKWRGEFADKPRTADYGMQVLSRVLSYAVDPLGKISQNPCEGIKQLYKNDRAAII 165 Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII 233 WT +D+ + K+ S + A + ++GLR D R H+ +N + T K+ Sbjct: 166 WTDQDIARLKTKCS--PEVAWAVDLAAHTGLRAGDLLRLSWSHITDNAIILPTGKSRHTK 223 Query: 234 TVELP--DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWF---KAKATKAGVNKSAHG 288 +P LL P N K F F + +A + H Sbjct: 224 EAVIPLYAELRALLQTIPRRSPIVLTNTRKAPWTVNGFGSSFSDCREEAKLGDRDLHFHD 283 Query: 289 VRKFSATISADAGATAHELMATYGWK 314 R +AT AG + + GW+ Sbjct: 284 FRGTAATKFYIAGLSERVIAEIMGWE 309 >gi|17987295|ref|NP_539929.1| integrase/recombinase [Brucella melitensis bv. 1 str. 16M] gi|17982974|gb|AAL52193.1| integrase/recombinase [Brucella melitensis bv. 1 str. 16M] Length = 336 Score = 43.5 bits (101), Expect = 0.051, Method: Compositional matrix adjust. Identities = 60/268 (22%), Positives = 104/268 (38%), Gaps = 19/268 (7%) Query: 62 NSPRKKPTTLKW--LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD-----FDY-RK 113 N R P K+ +I+ Y+ S + LA +++ ++ + D+I +K GD FD +K Sbjct: 41 NDSRVIPDASKFRAVITAYKSSHDYQKLADSTKRNWNGWLDRIGKKFGDLSITQFDLPQK 100 Query: 114 I--TTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171 I + R + T +Q L+ RVL ++ NPC +++ + Sbjct: 101 IRPVIRKWRGEFADKPRTADYGMQVLS--RVLSYAVDPLGKISQNPCEGIKQLYKNDRAA 158 Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231 WT +D+ + K+ S + A + ++GLR D R H+ +N + T K+ Sbjct: 159 IIWTDQDIARLKTKCS--PEVAWAVDLAAHTGLRAGDLLRLSWSHITDNAIILPTGKSRH 216 Query: 232 IITVELP--DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWF---KAKATKAGVNKSA 286 +P LL P N K F F + +A + Sbjct: 217 TKEAVIPLYAELRALLQTIPRRSPIVLTNTRKAPWTVNGFGSSFSDCREEAKLGDRDLYF 276 Query: 287 HGVRKFSATISADAGATAHELMATYGWK 314 H R +AT AG + + GW+ Sbjct: 277 HDFRGTAATKFYIAGLSERVIAEIMGWE 304 >gi|117624154|ref|YP_853067.1| putative phage integrase [Escherichia coli APEC O1] gi|115513278|gb|ABJ01353.1| putative phage integrase [Escherichia coli APEC O1] Length = 341 Score = 43.5 bits (101), Expect = 0.052, Method: Compositional matrix adjust. Identities = 45/197 (22%), Positives = 79/197 (40%), Gaps = 6/197 (3%) Query: 36 PYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISF 95 P ES + A L K E + R + T L ++ SA++ L+ ++ + Sbjct: 28 PTSRESVTLTAIKDGLAALWKKYEETVNNRDRAMTFGRLWEKFLASAYYSDLSPRTQKDY 87 Query: 96 ESYFDQIIRKSGDFDYRKITTKHIRSGVESR-KHTPSSAIQFLTSMRVLFKWAVRQEYVA 154 + +++ G I +HIR ++ R + + + A +SM ++ W + YV Sbjct: 88 LQHQKKLLAVFGKVPADSIKPEHIRRYMDKRGEQSKTQANHEKSSMSRVYSWGYERGYVK 147 Query: 155 INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR-LAFEFLLYSGLRCSDSCRAG 213 NPC V + K K KE +++ S P +A E R SD Sbjct: 148 ANPCAGVSKFKAKNRERYVTDKE----YQAVLSVAPLPVFIAMEIAYLCAARVSDVLSLK 203 Query: 214 VQHLQNNIFSIKTQKTG 230 + + N+ I+ KTG Sbjct: 204 WEQIGNDGIFIQQGKTG 220 >gi|170682438|ref|YP_001743215.1| phage integrase family site specific recombinase [Escherichia coli SMS-3-5] gi|331652781|ref|ZP_08353787.1| putative integrase for prophage [Escherichia coli M718] gi|331683632|ref|ZP_08384228.1| putative integrase for prophage [Escherichia coli H299] gi|170520156|gb|ACB18334.1| site-specific recombinase, phage integrase family [Escherichia coli SMS-3-5] gi|284921955|emb|CBG35031.1| phage integrase [Escherichia coli 042] gi|331049537|gb|EGI21608.1| putative integrase for prophage [Escherichia coli M718] gi|331078584|gb|EGI49786.1| putative integrase for prophage [Escherichia coli H299] Length = 341 Score = 43.5 bits (101), Expect = 0.053, Method: Compositional matrix adjust. Identities = 45/197 (22%), Positives = 79/197 (40%), Gaps = 6/197 (3%) Query: 36 PYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISF 95 P ES + A L K E + R + T L ++ SA++ L+ ++ + Sbjct: 28 PTSRESVTLTAIKDGLAALWKKYEETVNNRDRAMTFGRLWEKFLASAYYSDLSPRTQKDY 87 Query: 96 ESYFDQIIRKSGDFDYRKITTKHIRSGVESR-KHTPSSAIQFLTSMRVLFKWAVRQEYVA 154 + +++ G I +HIR ++ R + + + A +SM ++ W + YV Sbjct: 88 LQHQKKLLAVFGKVPADSIKPEHIRRYMDKRGEQSKTQANHEKSSMSRVYSWGYERGYVK 147 Query: 155 INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR-LAFEFLLYSGLRCSDSCRAG 213 NPC V + K K KE +++ S P +A E R SD Sbjct: 148 ANPCAGVSKFKAKNRERYVTDKE----YQAVLSVAPLPVFIAMEIAYLCAARVSDVLSLK 203 Query: 214 VQHLQNNIFSIKTQKTG 230 + + N+ I+ KTG Sbjct: 204 WEQIGNDGIFIQQGKTG 220 >gi|110805962|ref|YP_689482.1| putative integrase for prophage CP-933U [Shigella flexneri 5 str. 8401] gi|110615510|gb|ABF04177.1| putative integrase for prophage [Shigella flexneri 5 str. 8401] Length = 345 Score = 43.1 bits (100), Expect = 0.054, Method: Compositional matrix adjust. Identities = 45/197 (22%), Positives = 79/197 (40%), Gaps = 6/197 (3%) Query: 36 PYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISF 95 P ES + A L K E + R + T L ++ SA++ L+ ++ + Sbjct: 28 PTSRESVTLTAIKDGLAALWKKYEETVNNRDRAMTFGRLWEKFLASAYYSDLSPRTQKDY 87 Query: 96 ESYFDQIIRKSGDFDYRKITTKHIRSGVESR-KHTPSSAIQFLTSMRVLFKWAVRQEYVA 154 + +++ G I +HIR ++ R + + + A +SM ++ W + YV Sbjct: 88 LQHQKKLLAVFGKVPADSIKPEHIRRYMDKRGEQSKTQANHEKSSMSRVYSWGYERGYVK 147 Query: 155 INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR-LAFEFLLYSGLRCSDSCRAG 213 NPC V + K K KE +++ S P +A E R SD Sbjct: 148 ANPCAGVSKFKAKNRERYVTDKE----YQAVLSVAPLPVFIAMEIAYLCAARVSDVLSLK 203 Query: 214 VQHLQNNIFSIKTQKTG 230 + + N+ I+ KTG Sbjct: 204 WEQIGNDGIFIQQGKTG 220 >gi|320180132|gb|EFW55072.1| Putative integrase [Shigella boydii ATCC 9905] Length = 345 Score = 43.1 bits (100), Expect = 0.055, Method: Compositional matrix adjust. Identities = 45/197 (22%), Positives = 79/197 (40%), Gaps = 6/197 (3%) Query: 36 PYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISF 95 P ES + A L K E + R + T L ++ SA++ L+ ++ + Sbjct: 28 PTSRESVTLTAIKDGLAALWKKYEETVNNRDRAMTFGRLWEKFLASAYYSDLSPRTQKDY 87 Query: 96 ESYFDQIIRKSGDFDYRKITTKHIRSGVESR-KHTPSSAIQFLTSMRVLFKWAVRQEYVA 154 + +++ G I +HIR ++ R + + + A +SM ++ W + YV Sbjct: 88 LQHQKKLLAVFGKVPADSIKPEHIRRYMDKRGEQSKTQANHEKSSMSRVYSWGYERGYVK 147 Query: 155 INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR-LAFEFLLYSGLRCSDSCRAG 213 NPC V + K K KE +++ S P +A E R SD Sbjct: 148 ANPCAGVSKFKAKNRERYVTDKE----YQAVLSVAPLPVFIAMEIAYLCAARVSDVLSLK 203 Query: 214 VQHLQNNIFSIKTQKTG 230 + + N+ I+ KTG Sbjct: 204 WEQIGNDGIFIQQGKTG 220 >gi|237729900|ref|ZP_04560381.1| phage integrase [Citrobacter sp. 30_2] gi|226908506|gb|EEH94424.1| phage integrase [Citrobacter sp. 30_2] Length = 398 Score = 43.1 bits (100), Expect = 0.055, Method: Compositional matrix adjust. Identities = 65/282 (23%), Positives = 114/282 (40%), Gaps = 15/282 (5%) Query: 52 TGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFD 110 TG+ P+ E + R PT L+ S+Y W L S E F D I G+ Sbjct: 91 TGTDPRYER-DKCRAIPT-LQEAFSQYYFP--WAKLHKKSWNKDEQRFRDHIAPVMGNLL 146 Query: 111 YRKITTKHIRSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168 +IT +H+ S T P++ + + ++ L +W++R E VA NP + + Sbjct: 147 LNEITPRHVTHLQSSLCETCQPATNNRVIALLKALLRWSLRHEMVATNPAANTPLLRENN 206 Query: 169 EGIRPWTKEDMQQ-FKSFWSEGSQPRLAFEFLLYSGLRCSDSCR-AGVQH--LQNNIFSI 224 R +++ ++++ F++ + S+ + LL D R A H LQ + Sbjct: 207 ARQRYFSETEIRRIFEAASEDNSRVASIYIRLLLLTGLRRDELRLAKWAHYSLQQGTLWL 266 Query: 225 KTQKTGTIITVELPDGFMKLLAMTP-IGKETFFINNDKQKMNATQFSIWFKAKATKAGV- 282 K GT V L D +KL+A P G + + F+ +AG+ Sbjct: 267 PETKNGTGRLVHLNDWAIKLIAELPRFGGNIWMFGGKIPGKPVCNVTKAFRRIIRRAGIY 326 Query: 283 --NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 H R A + G T +++ A G +++ ++ Y Sbjct: 327 DDEVCIHTCRHSVAALIVSRGGTLYDVQAQLGHRSIQSSQRY 368 >gi|323475083|gb|ADX85689.1| XerC/D integrase-recombinase protein [Sulfolobus islandicus REY15A] gi|323477815|gb|ADX83053.1| XerC/D integrase-recombinase protein [Sulfolobus islandicus HVE10/4] Length = 291 Score = 43.1 bits (100), Expect = 0.055, Method: Compositional matrix adjust. Identities = 45/205 (21%), Positives = 86/205 (41%), Gaps = 18/205 (8%) Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 VE R+ + ++ ++R KW V++ P + PK + + ++ + +Q+ Sbjct: 77 VEKRRAKSVTIRYYIIAVRRFLKWL----NVSVKPPI----PKVRRKEVKALDESQIQKV 128 Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH--LQNNIFSIKTQKTGTIITVELPDG 240 + ++ +L LL +GLR ++ V+ L+NN+ ++ K G V D Sbjct: 129 LNMCKR-TKDKLIIRLLLDTGLRANELLSVLVKDVDLENNMIRVRNTKNGEERVVFFTDE 187 Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAK--ATKAGVNKSAHGVRKFSATISA 298 +LL GK+ D++ + T +++ K K K + H +R AT+S Sbjct: 188 TKQLLRKYMKGKKL-----DEKLFDITYDALYRKLKRLGNKVEIELRPHILRHTFATLSL 242 Query: 299 DAGATAHELMATYGWKTVDQAETYT 323 G L G K + + YT Sbjct: 243 KRGINVITLQKLLGHKDIKTTQIYT 267 >gi|66044755|ref|YP_234596.1| Phage integrase:Phage integrase, N-terminal SAM-like [Pseudomonas syringae pv. syringae B728a] gi|63255462|gb|AAY36558.1| Phage integrase:Phage integrase, N-terminal SAM-like [Pseudomonas syringae pv. syringae B728a] Length = 319 Score = 43.1 bits (100), Expect = 0.056, Method: Compositional matrix adjust. Identities = 56/233 (24%), Positives = 92/233 (39%), Gaps = 33/233 (14%) Query: 99 FDQIIRKSGDFDYRKITTKHI---RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAI 155 F + +G ++R +T H+ R+ +E R ++ + L ++ LF + VA Sbjct: 52 FCSFVGLAGAEEFRAVTRAHVLAWRARLEKRGLAGATIRRKLAALASLFDHLLENNAVAG 111 Query: 156 -NPCLSVERPK-RKTEGIRPWTKEDMQQFKSFWS-------EGSQPRLAFEFLLYSGLRC 206 NP V+RP+ EG P + Q K+ +G + R LLY GLR Sbjct: 112 GNPVHGVKRPRIESNEGKTPALAD--HQAKALLDAPPADSLKGLRDRAVLAVLLYHGLRR 169 Query: 207 SDSCRAGVQHLQN--NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ-K 263 + + LQ I ++ G G ++ L + P+ E + +K + Sbjct: 170 EEGAQLKTSDLQERRGIKHLRVNGKG---------GKLRWLPLHPVAAERIYAYMEKDLE 220 Query: 264 MNATQFSIWFKAKATKAGVNKSAHGVRK------FSATISADAGATAHELMAT 310 A S++ + +G SA G+ K SA I D G H L AT Sbjct: 221 RGAGNGSLFRSLRGRASGTGLSADGIYKIVCHWAMSAGIKVD-GLGVHGLRAT 272 >gi|194435415|ref|ZP_03067602.1| site-specific recombinase, phage integrase family [Shigella dysenteriae 1012] gi|194416345|gb|EDX32527.1| site-specific recombinase, phage integrase family [Shigella dysenteriae 1012] Length = 341 Score = 43.1 bits (100), Expect = 0.056, Method: Compositional matrix adjust. Identities = 45/197 (22%), Positives = 79/197 (40%), Gaps = 6/197 (3%) Query: 36 PYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISF 95 P ES + A L K E + R + T L ++ SA++ L+ ++ + Sbjct: 28 PTSRESVTLTAIKDGLAALWKKYEETVNNRDRAMTFGRLWEKFLASAYYSDLSPRTQKDY 87 Query: 96 ESYFDQIIRKSGDFDYRKITTKHIRSGVESR-KHTPSSAIQFLTSMRVLFKWAVRQEYVA 154 + +++ G I +HIR ++ R + + + A +SM ++ W + YV Sbjct: 88 LQHQKKLLAVFGKVPADSIKPEHIRRYMDKRGEQSKTQANHEKSSMSRVYSWGYERGYVK 147 Query: 155 INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR-LAFEFLLYSGLRCSDSCRAG 213 NPC V + K K KE +++ S P +A E R SD Sbjct: 148 ANPCAGVSKFKAKNRERYVTDKE----YQAVLSVAPLPVFIAMEIAYLCAARVSDVLSLK 203 Query: 214 VQHLQNNIFSIKTQKTG 230 + + N+ I+ KTG Sbjct: 204 WEQIGNDGIFIQQGKTG 220 >gi|166032543|ref|ZP_02235372.1| hypothetical protein DORFOR_02258 [Dorea formicigenerans ATCC 27755] gi|166026900|gb|EDR45657.1| hypothetical protein DORFOR_02258 [Dorea formicigenerans ATCC 27755] Length = 400 Score = 43.1 bits (100), Expect = 0.057, Method: Compositional matrix adjust. Identities = 30/97 (30%), Positives = 49/97 (50%), Gaps = 8/97 (8%) Query: 97 SYFDQIIRKS-GDFDYRKITTKHIRSGVESR-----KHTPSSAIQFLTSMRVLFKWAVRQ 150 SY++ ++ S G + I T H++ + H S I+F+ S +F AV Sbjct: 94 SYYNSRVKNSIGKMYLQDIKTYHVQKFLNDLIDSGLAHGTVSNIRFMLSD--MFDKAVLS 151 Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 EY+ NPC+ VE PK + R T+E+ ++F +F S Sbjct: 152 EYIRKNPCIGVEMPKEVKKERRVLTREEQEKFFTFAS 188 >gi|282878705|ref|ZP_06287473.1| phage integrase domain protein [Prevotella buccalis ATCC 35310] gi|281299096|gb|EFA91497.1| phage integrase domain protein [Prevotella buccalis ATCC 35310] Length = 292 Score = 43.1 bits (100), Expect = 0.057, Method: Compositional matrix adjust. Identities = 57/253 (22%), Positives = 106/253 (41%), Gaps = 30/253 (11%) Query: 94 SFESYF----DQIIRKSGDFDYRKITTKHIRSGVES---RKHTPSSAIQFLTSMRVLFKW 146 +FE YF DQI +S D D IR +E R ++ +S + L+++R L+++ Sbjct: 29 AFERYFQGLGDQITWESVDSDI-------IRGWMEDMMDRGNSATSICRRLSALRSLYRY 81 Query: 147 AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF--KSFWSEGSQPRLAFEFLL---Y 201 ++ + V +NP L +ERPK + + +M + S W Q LA ++ Sbjct: 82 SLSRGLVQVNPTLRIERPKMGKPLPQFLKESEMDELLDASTWDTSYQDALARTIIITFYE 141 Query: 202 SGLRCS-----DSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM--TPIGKET 254 +G+R + D + Q + + ++ EL + L I +++ Sbjct: 142 TGMRLAELIGLDDVSVDFVNRQFKVLGKRNKQRLVPFGDELYQVLQEYLNQRNEQIVRKS 201 Query: 255 --FFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMAT 310 FF++ + +MN Q K + K + H +R AT + GA + Sbjct: 202 KAFFLSRNGVRMNHNQVRYLVKKNLSLVSTLKKRTPHVLRHTFATTMLNNGAGLENVQKL 261 Query: 311 YGWKTVDQAETYT 323 G ++++ E YT Sbjct: 262 LGHESLETTEIYT 274 >gi|325971096|ref|YP_004247287.1| tyrosine recombinase xerC [Spirochaeta sp. Buddy] gi|324026334|gb|ADY13093.1| Tyrosine recombinase xerC [Spirochaeta sp. Buddy] Length = 300 Score = 43.1 bits (100), Expect = 0.058, Method: Compositional matrix adjust. Identities = 50/233 (21%), Positives = 90/233 (38%), Gaps = 20/233 (8%) Query: 110 DYRKITTKHIRS----GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK 165 DY IT I + V++R + S + L+++R F + + NP L ++R + Sbjct: 45 DYETITASLIEAYIVIQVQTRHLSERSVAKLLSALRSFFSFLQMSKIREDNPVLLIQRGR 104 Query: 166 RKTE--GIRPWTKED--MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI 221 +K + + D ++ + G + R FE + GLR S++C V Q Sbjct: 105 QKQSLPQVASVAQVDALLESIDTSDLLGFRDRTLFELIYSCGLRISEACTLQVSDYQKTS 164 Query: 222 FSI--KTQKTGTIITVELP----DGFM-----KLLAMTPIGKETFFINNDKQKMNATQFS 270 + K K I E+ D ++ KL+ M + + F+ ++ Sbjct: 165 IRVVGKRHKIRIIPVGEIARMWVDAYLKDIRPKLIGM-RLSTKALFVGRRGHQLTRQAMY 223 Query: 271 IWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 F A AG++ H +R AT + GA + G + + YT Sbjct: 224 KRFIAYCDVAGLDAKVHTLRHSFATHLLEGGADLRSVQELLGHSDIKTTQIYT 276 >gi|257784507|ref|YP_003179724.1| integrase family protein [Atopobium parvulum DSM 20469] gi|257473014|gb|ACV51133.1| integrase family protein [Atopobium parvulum DSM 20469] Length = 305 Score = 43.1 bits (100), Expect = 0.058, Method: Compositional matrix adjust. Identities = 57/252 (22%), Positives = 99/252 (39%), Gaps = 25/252 (9%) Query: 108 DFDYRKITTKHIRSGVESRKHTPSSAIQF---LTSMRVLFKWAVRQEYVAINPCLSVERP 164 + D ++ K++R + K SA L+++R +KW R++ +A +P L++ P Sbjct: 47 NVDLTQVDHKNLRLYLAYLKQAQYSAKTLNRHLSALRGFYKWMQREKLIATDPALALSNP 106 Query: 165 KRKTEGIRPWTKEDMQQFKSFW----SEGSQPRLAFEFLLYSGLRCSD--SCRAGVQHLQ 218 + T D+ + + G + R EFL +G R S+ + R LQ Sbjct: 107 RAPRNLPHTMTDSDVNRLLESCDVSTAAGLRDRAFLEFLYATGARISEVATLRLEQVDLQ 166 Query: 219 NNIFSI--KTQKTGTIITVELPDGFMK---------LLAMTPIGK--ETFFINNDKQKMN 265 N + K K + E ++K LL G+ FI+ M+ Sbjct: 167 NGTVRLFGKGSKERIVPLYESAIEWLKKYLRSSRPTLLLKDKTGRVHSALFISVRGNNMS 226 Query: 266 ATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 A F + T AG++ S H +R AT GA + G +++ + YT Sbjct: 227 ADSLRKVFSSYLTAAGLDSSLSPHAMRHTYATELLGGGADLRIVQELLGHESLSTTQVYT 286 Query: 324 K-GADRIRLGIK 334 DR++ K Sbjct: 287 HLSVDRLKEAAK 298 >gi|325954362|ref|YP_004238022.1| Tyrosine recombinase xerC [Weeksella virosa DSM 16922] gi|323436980|gb|ADX67444.1| Tyrosine recombinase xerC [Weeksella virosa DSM 16922] Length = 301 Score = 43.1 bits (100), Expect = 0.058, Method: Compositional matrix adjust. Identities = 63/280 (22%), Positives = 114/280 (40%), Gaps = 31/280 (11%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES---RK 127 L +L E R S H F S++ I +S D K HIRS + S + Sbjct: 8 LDYLQYEKRYSLHTIKNYRRDLDDFLSFYQ--IEESSD-SIEKAEKNHIRSFIISLSDKN 64 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + S + L+S+R + + ++ + +P L ++ K K E I P+T+++MQ+ + Sbjct: 65 ISERSINRKLSSLRTFYIYLIKTGQLTTSPMLQIKSLKTKKEVIIPYTEKEMQRLFELEN 124 Query: 188 ------EGSQPRLAFEFLLYSGLRCSDSCRAGVQHL---QNNIFSIKTQKTGTIITV--E 236 +G + RL +G+R + + + L Q I + + ++ + Sbjct: 125 IFPDDFDGIRDRLMMNLFYQTGIRRGELIQLTLPQLRIEQKEIKVLGKRNKERVLPIGEN 184 Query: 237 LPDGFMKLLAM--TPIGKE--TFFINNDKQKM------NATQFSIWFKAKATKAGVNKSA 286 L F + L + +G E T FI N+ Q + + + F + K KS Sbjct: 185 LVSEFTRYLKVRKEVVGSENLTLFIKNNGQALYEKFVYERVNYYLSFITEKHK----KSP 240 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 H +R AT + GA + L G ++ + YT + Sbjct: 241 HVLRHTFATQLLENGADLNALKEILGHSSLSSTQIYTHSS 280 >gi|281601440|gb|ADA74424.1| putative phage integrase [Shigella flexneri 2002017] gi|313649784|gb|EFS14207.1| phage integrase family protein [Shigella flexneri 2a str. 2457T] gi|315618062|gb|EFU98654.1| phage integrase family protein [Escherichia coli 3431] gi|320193246|gb|EFW67884.1| Putative integrase [Escherichia coli WV_060327] gi|332091590|gb|EGI96671.1| phage integrase family protein [Shigella dysenteriae 155-74] Length = 341 Score = 43.1 bits (100), Expect = 0.059, Method: Compositional matrix adjust. Identities = 45/197 (22%), Positives = 79/197 (40%), Gaps = 6/197 (3%) Query: 36 PYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISF 95 P ES + A L K E + R + T L ++ SA++ L+ ++ + Sbjct: 28 PTSRESVTLTAIKDGLAALWKKYEETVNNRDRAMTFGRLWEKFLASAYYSDLSPRTQKDY 87 Query: 96 ESYFDQIIRKSGDFDYRKITTKHIRSGVESR-KHTPSSAIQFLTSMRVLFKWAVRQEYVA 154 + +++ G I +HIR ++ R + + + A +SM ++ W + YV Sbjct: 88 LQHQKKLLAVFGKVPADSIKPEHIRRYMDKRGEQSKTQANHEKSSMSRVYSWGYERGYVK 147 Query: 155 INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR-LAFEFLLYSGLRCSDSCRAG 213 NPC V + K K KE +++ S P +A E R SD Sbjct: 148 ANPCAGVSKFKAKNRERYVTDKE----YQAVLSVAPLPVFIAMEIAYLCAARVSDVLSLK 203 Query: 214 VQHLQNNIFSIKTQKTG 230 + + N+ I+ KTG Sbjct: 204 WEQIGNDGIFIQQGKTG 220 >gi|261317605|ref|ZP_05956802.1| conserved hypothetical protein [Brucella pinnipedialis B2/94] gi|265988639|ref|ZP_06101196.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1] gi|261296828|gb|EEY00325.1| conserved hypothetical protein [Brucella pinnipedialis B2/94] gi|264660836|gb|EEZ31097.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1] Length = 304 Score = 43.1 bits (100), Expect = 0.059, Method: Compositional matrix adjust. Identities = 60/268 (22%), Positives = 104/268 (38%), Gaps = 19/268 (7%) Query: 62 NSPRKKPTTLKW--LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD-----FDY-RK 113 N R P K+ +I+ Y+ S + LA +++ ++ + D+I +K GD FD +K Sbjct: 9 NDSRVIPDASKFRAVITAYKSSHDYQKLADSTKRNWNGWLDRIGKKFGDLSIAQFDLPQK 68 Query: 114 I--TTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171 I + R + T +Q L+ RVL ++ NPC +++ + Sbjct: 69 IRPVIRKWRGEFADKPRTADYGMQVLS--RVLSYAVDPLGKISQNPCEGIKQLYKNDRAA 126 Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231 WT +D+ + K+ S + A + ++GLR D R H+ +N + T K+ Sbjct: 127 IIWTDQDIARLKTKCS--PEVAWAVDLAAHTGLRAGDLLRLSWSHITDNAIILPTGKSRH 184 Query: 232 IITVELP--DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWF---KAKATKAGVNKSA 286 +P LL P N K F F + +A + Sbjct: 185 TKEAVIPLYAELRALLQTIPRRSPIVLTNTRKAPWTVNGFGSSFSDCREEAKLGDRDLHF 244 Query: 287 HGVRKFSATISADAGATAHELMATYGWK 314 H R +AT AG + + GW+ Sbjct: 245 HDFRGTAATKFYIAGLSERVIAEIMGWE 272 >gi|294852313|ref|ZP_06792986.1| hypothetical protein BAZG_01235 [Brucella sp. NVSL 07-0026] gi|294820902|gb|EFG37901.1| hypothetical protein BAZG_01235 [Brucella sp. NVSL 07-0026] Length = 341 Score = 43.1 bits (100), Expect = 0.059, Method: Compositional matrix adjust. Identities = 54/254 (21%), Positives = 97/254 (38%), Gaps = 17/254 (6%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD-----FDY-RKI--TTKHIRSGVES 125 +I+ Y+ S + LA +++ ++ + D+I +K GD FD +KI + R Sbjct: 60 VITAYKSSHDYQKLADSTKRNWNGWLDRIGKKFGDLSIAQFDLPQKIRPVIRKWRGEFAD 119 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + T +Q L+ RVL ++ NPC +++ + WT +D+ + K+ Sbjct: 120 KPRTADYGMQVLS--RVLSYAVDPLGKISQNPCEGIKQLYKNDRAAIIWTDQDIARLKTK 177 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP--DGFMK 243 S + A + ++GLR D R H+ +N + T K+ +P Sbjct: 178 CS--PEVAWAVDLAAHTGLRAGDLLRLSWSHITDNAIILPTGKSRHTKEAVIPLYAELRA 235 Query: 244 LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISAD---A 300 LL P N K F F +A + F T++ A Sbjct: 236 LLQTIPRRSPIVLTNTRKAPWTVNGFGSSFSDCREEAKLGDRDLHFHDFRGTVATKFYIA 295 Query: 301 GATAHELMATYGWK 314 G + + GW+ Sbjct: 296 GLSERVIAEIMGWE 309 >gi|269120433|ref|YP_003308610.1| integrase family protein [Sebaldella termitidis ATCC 33386] gi|268614311|gb|ACZ08679.1| integrase family protein [Sebaldella termitidis ATCC 33386] Length = 307 Score = 43.1 bits (100), Expect = 0.059, Method: Compositional matrix adjust. Identities = 32/118 (27%), Positives = 52/118 (44%), Gaps = 7/118 (5%) Query: 98 YFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS---SAIQFLTSMRVLFKWAVRQEYVA 154 + D I FDY K+ +RS + + S + ++++R F + Q V Sbjct: 42 FIDYISGNEEIFDYNKVEVFTVRSFIAYSNNNEVGKRSINRKISALRTFFAYLKEQNIVE 101 Query: 155 INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRLAFEFLLYSGLRCSD 208 N + V PK + E TK+D+ + ++ G + RL EFL SGLR S+ Sbjct: 102 ANKLIYVNMPKFEKELPTVLTKDDINKLRNVIDISKVTGIRDRLIIEFLYSSGLRSSE 159 >gi|256113508|ref|ZP_05454342.1| phage-related integrase [Brucella melitensis bv. 3 str. Ether] gi|265994891|ref|ZP_06107448.1| conserved hypothetical protein [Brucella melitensis bv. 3 str. Ether] gi|262766004|gb|EEZ11793.1| conserved hypothetical protein [Brucella melitensis bv. 3 str. Ether] Length = 341 Score = 43.1 bits (100), Expect = 0.060, Method: Compositional matrix adjust. Identities = 43/178 (24%), Positives = 79/178 (44%), Gaps = 14/178 (7%) Query: 62 NSPRKKPTTLKW--LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD-----FDY-RK 113 N R P K+ +I+ Y+ S + LA +++ ++ + D+I +K GD FD +K Sbjct: 46 NDSRVIPDASKFRAVITAYKSSHDYQKLADSTKRNWNGWLDRIGKKFGDLSIAQFDLPQK 105 Query: 114 I--TTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171 I + R + T +Q L+ RVL ++ NPC +++ + Sbjct: 106 IRPVIRKWRGEFADKPRTADYGMQVLS--RVLSYAVDPLGKISQNPCEGIKQLYKNDRAA 163 Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229 WT +D+ + K+ S + A + ++GLR D R H+ +N + T K+ Sbjct: 164 IIWTDQDIARLKTKCS--PEVAWAVDLAAHTGLRAGDLLRLSWSHITDNAIILPTGKS 219 >gi|256393898|ref|YP_003115462.1| integrase family protein [Catenulispora acidiphila DSM 44928] gi|256360124|gb|ACU73621.1| integrase family protein [Catenulispora acidiphila DSM 44928] Length = 354 Score = 43.1 bits (100), Expect = 0.060, Method: Compositional matrix adjust. Identities = 45/226 (19%), Positives = 85/226 (37%), Gaps = 37/226 (16%) Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINP------CLSVERPKRKTEGIRPWTKEDMQQFK 183 P++ + ++++R + +AV Y + +P L + R RK++ + P +E + Sbjct: 117 PATLARKISAVRNFYAYAVDSGYTSSSPVPIKDKALHLPRVSRKSQTLGPDREESAAMLE 176 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243 + G + LLY GLR S+ C G+ N+ + +Q+ ++ + G + Sbjct: 177 AAAQRGVRDEAVVAVLLYQGLRVSELC--GI-----NVEDLSSQRGHRVVRLRRKGGEEQ 229 Query: 244 LLAMTPIGKETF----------------------FINNDKQKMNATQFSIWFKAKATKAG 281 A+ P F+ + ++ Q ++ A AG Sbjct: 230 DQAIAPPAAGCLDAWLAERARDSAFGAVPASGPVFVGPEGARLTRYQVEWIVESCARAAG 289 Query: 282 VNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 V K S H +R T+ DAG ++ G E Y G Sbjct: 290 VEKKISPHSLRHACTTMLLDAGVPLRDIQVYMGHANSATTERYDLG 335 >gi|260563980|ref|ZP_05834466.1| phage integrase [Brucella melitensis bv. 1 str. 16M] gi|260153996|gb|EEW89088.1| phage integrase [Brucella melitensis bv. 1 str. 16M] Length = 341 Score = 43.1 bits (100), Expect = 0.061, Method: Compositional matrix adjust. Identities = 60/268 (22%), Positives = 104/268 (38%), Gaps = 19/268 (7%) Query: 62 NSPRKKPTTLKW--LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD-----FDY-RK 113 N R P K+ +I+ Y+ S + LA +++ ++ + D+I +K GD FD +K Sbjct: 46 NDSRVIPDASKFRAVITAYKSSHDYQKLADSTKRNWNGWLDRIGKKFGDLSITQFDLPQK 105 Query: 114 I--TTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171 I + R + T +Q L+ RVL ++ NPC +++ + Sbjct: 106 IRPVIRKWRGEFADKPRTADYGMQVLS--RVLSYAVDPLGKISQNPCEGIKQLYKNDRAA 163 Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231 WT +D+ + K+ S + A + ++GLR D R H+ +N + T K+ Sbjct: 164 IIWTDQDIARLKTKCS--PEVAWAVDLAAHTGLRAGDLLRLSWSHITDNAIILPTGKSRH 221 Query: 232 IITVELP--DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWF---KAKATKAGVNKSA 286 +P LL P N K F F + +A + Sbjct: 222 TKEAVIPLYAELRALLQTIPRRSPIVLTNTRKAPWTVNGFGSSFSDCREEAKLGDRDLYF 281 Query: 287 HGVRKFSATISADAGATAHELMATYGWK 314 H R +AT AG + + GW+ Sbjct: 282 HDFRGTAATKFYIAGLSERVIAEIMGWE 309 >gi|320161519|ref|YP_004174743.1| putative site-specific recombinase [Anaerolinea thermophila UNI-1] gi|319995372|dbj|BAJ64143.1| putative site-specific recombinase [Anaerolinea thermophila UNI-1] Length = 300 Score = 43.1 bits (100), Expect = 0.061, Method: Compositional matrix adjust. Identities = 53/274 (19%), Positives = 100/274 (36%), Gaps = 22/274 (8%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130 L + I E+ + L+ + + +E+ + R+ GDFD I K I + S + Sbjct: 4 LSYCIDEFLEFKRAQRLSRWTLLDYETVLRRFNREIGDFDIDHIERKTIAHYLASLDLSK 63 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF-------- 182 T++ L+ WAV Y ++ ++ PK + I P+T++ + Sbjct: 64 KRVKNIYTALSSLWTWAVEMGYCTVHIIRQIKPPKPEKRPILPFTRDQIMNMLASTDASK 123 Query: 183 ----------KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI--KTQKTG 230 ++ G + R LL +G+R S+ C V+ ++ + I K K Sbjct: 124 EYTRPGKRACRNRLKTGVRDRAIILLLLDTGIRASELCGIKVKDIKPHGIYIHGKGSKDR 183 Query: 231 TI-ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS-AHG 288 + I+ + ++ F ++ + + +AGVN + H Sbjct: 184 LVPISETTRSALCDYIGEQKDIEKYVFKTEQGNVLSRDALRLIIRRIGDRAGVNDAHPHR 243 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETY 322 R A G L A G +T+D Y Sbjct: 244 FRHTFAINFLRNGGDVFTLQAILGHETLDMVRRY 277 >gi|119715959|ref|YP_922924.1| phage integrase family protein [Nocardioides sp. JS614] gi|119536620|gb|ABL81237.1| phage integrase family protein [Nocardioides sp. JS614] Length = 378 Score = 43.1 bits (100), Expect = 0.061, Method: Compositional matrix adjust. Identities = 52/221 (23%), Positives = 89/221 (40%), Gaps = 26/221 (11%) Query: 114 ITTKHIRSGVESRKHTPSSAIQFLTSMRVL---FKWAVRQEYVAINPCLSVERPKRKTEG 170 + ++ +R ES+ SA VL AV +A++PC + PK + Sbjct: 114 LESRELRPATESQPARTLSAGSVRNIYEVLARVMDAAVEDRVIAVSPCRRIALPKGHDDE 173 Query: 171 IRPWTKEDMQQFKSFWSE----------GSQPRLAFEFLLYSGLRCSD------SCRAGV 214 + T +++ + + +E GS R+ E L GLR SD S R Sbjct: 174 VEVPTLDEIDRVRDALAERWQVLPVVLAGSGLRVG-ELL---GLRLSDVDFLRRSIRVER 229 Query: 215 QHLQ-NNIFSIKTQKTGTIITVE--LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI 271 Q LQ N I +K++ + + V + D LA P +E F + + + ++ Sbjct: 230 QRLQTNQIAPLKSKASRRRVPVGQVVIDALAAHLASYPPTEEALFTDEFGKPLTYRRWKR 289 Query: 272 WFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYG 312 A AG ++H R F+A+ GA+ ++ A G Sbjct: 290 LVSDAAKVAGAEITSHSFRHFAASALISGGASVKQVQAFLG 330 >gi|91789051|ref|YP_550003.1| tyrosine recombinase XerD subunit [Polaromonas sp. JS666] gi|91698276|gb|ABE45105.1| tyrosine recombinase XerD subunit [Polaromonas sp. JS666] Length = 300 Score = 43.1 bits (100), Expect = 0.062, Method: Compositional matrix adjust. Identities = 47/217 (21%), Positives = 87/217 (40%), Gaps = 25/217 (11%) Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-- 188 +SA + LT + F+WA+R+ + ++P L ++ K+ + ++ ++ + SE Sbjct: 73 TSANRRLTVFKRYFRWALRERLITVDPTLKLQSAKQALRVPKVMSEAQVEALLAAPSEST 132 Query: 189 --GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-------------I 233 G + R E + SGLR S+ H+ N ++ G+ + Sbjct: 133 PLGQRDRAMLELMYASGLRVSELVGLKTFHVGLNEGVLRVMGKGSKERLVPFGQVAREWV 192 Query: 234 TVELPDGFMKLLAMTPIGKET--FFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289 + L + +L G++T F+ N M+ F + K A AG++ S H + Sbjct: 193 VLYLAEARPAILG----GQQTDDLFVTNRGSGMSRVMFWMLVKKYAQLAGIHSPLSPHTL 248 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 R AT + GA + G + YT A Sbjct: 249 RHAFATHLLNHGADLRAVQMLLGHADISTTTIYTHVA 285 >gi|148256274|ref|YP_001240859.1| putative phage-like integrase [Bradyrhizobium sp. BTAi1] gi|146408447|gb|ABQ36953.1| putative phage-like integrase [Bradyrhizobium sp. BTAi1] Length = 434 Score = 43.1 bits (100), Expect = 0.062, Method: Compositional matrix adjust. Identities = 64/289 (22%), Positives = 109/289 (37%), Gaps = 47/289 (16%) Query: 43 FIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI 102 FI + TG P+R +I R L W S+ + G LA R FD Sbjct: 130 FIQERTTRKTGEKPRR-WIEEAR----LLGWDFSKDEPAIVKGGLADRFRDKPVLDFD-- 182 Query: 103 IRKSGDFDYRKITT--KHIRSGVESRKHTPSSAI--QFLTSMRVLFKWAVRQEYVAINPC 158 GD Y I +H G+ R PS A ++ LFKW R+ + +NP Sbjct: 183 ----GDEIYALIAEARRHGVPGMARRSAAPSDARGRHMAAALSALFKWLHRERRIKVNPV 238 Query: 159 LSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGV 214 L + +P R + + K FW+ GS + LL +G R ++ R Sbjct: 239 LGLSKPPNSPSRRRFLSD---AEIKKFWAACTTLGSPFGPMLKLLLLTGQRLNEIARLHD 295 Query: 215 QHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFK 274 L + + +T + ++P ++ + KE + Q++ +++ Sbjct: 296 TELTDEAIRLPGSRTKNALPHDVP--------LSSLAKEVL---AEVQRVPNSKYVFSTN 344 Query: 275 AKATKAGVNKSA--------------HGVRKFSATISADAGATAHELMA 309 +A +G +K+ H +R+ +AT A+ G H + A Sbjct: 345 GRAPVSGFSKAKSRIDDLLNIEPWVFHDLRRSAATGMAEIGIQPHVIEA 393 >gi|254714058|ref|ZP_05175869.1| Phage integrase [Brucella ceti M644/93/1] gi|254716885|ref|ZP_05178696.1| Phage integrase [Brucella ceti M13/05/1] Length = 303 Score = 43.1 bits (100), Expect = 0.063, Method: Compositional matrix adjust. Identities = 60/268 (22%), Positives = 104/268 (38%), Gaps = 19/268 (7%) Query: 62 NSPRKKPTTLKW--LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD-----FDY-RK 113 N R P K+ +I+ Y+ S + LA +++ ++ + D+I +K GD FD +K Sbjct: 8 NDSRVIPDASKFRAVITAYKSSHDYQKLADSTKRNWNGWLDRIGKKFGDLSIAQFDLPQK 67 Query: 114 I--TTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171 I + R + T +Q L+ RVL ++ NPC +++ + Sbjct: 68 IRPVIRKWRGEFADKPRTADYGMQVLS--RVLSYAVDPLGKISQNPCEGIKQLYKNDRAA 125 Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231 WT +D+ + K+ S + A + ++GLR D R H+ +N + T K+ Sbjct: 126 IIWTDQDIARLKTKCS--PEVAWAVDLAAHTGLRAGDLLRLSWSHITDNAIILPTGKSRH 183 Query: 232 IITVELP--DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWF---KAKATKAGVNKSA 286 +P LL P N K F F + +A + Sbjct: 184 TKEAVIPLYAELRALLQTIPRRSPIVLTNTRKAPWTVNGFGSSFSDCREEAKLGDRDLHF 243 Query: 287 HGVRKFSATISADAGATAHELMATYGWK 314 H R +AT AG + + GW+ Sbjct: 244 HDFRGTAATKFYIAGLSERVIAEIMGWE 271 >gi|323340732|ref|ZP_08080984.1| integrase/recombinase XerD [Lactobacillus ruminis ATCC 25644] gi|323091855|gb|EFZ34475.1| integrase/recombinase XerD [Lactobacillus ruminis ATCC 25644] Length = 300 Score = 43.1 bits (100), Expect = 0.063, Method: Compositional matrix adjust. Identities = 51/249 (20%), Positives = 97/249 (38%), Gaps = 54/249 (21%) Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF----KSFW 186 +S I+ +TS+R F+ + E + +P +S+E PK + + E+++ + Sbjct: 73 ASIIRCVTSLRKFFQSMKQDEKIQDDPMISIETPKGEKHLPEVLSIEEVEMLLNAPDTSQ 132 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246 + G + R E + +GLR S+ ++ L ++ I+T G + Sbjct: 133 TLGIRNRAILELMYATGLRVSEVVNLKLEDLHLDVGIIQTMGKG------------RKER 180 Query: 247 MTPIGKET-----------------------FFINNDKQKMNATQFSIW--FKAKATKAG 281 + PIG E F+N +++ T+ IW K + KAG Sbjct: 181 IVPIGDEAIVWINNYLNDARPELCKNKRSPFLFVNFHGERL--TRQGIWKNLKNEVKKAG 238 Query: 282 VNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339 ++K+ H +R AT + GA + G + + YT + +R+ Sbjct: 239 ISKNVTPHTLRHSFATHILENGADLRIVQELLGHSDISTTQIYTHIS---------KKRL 289 Query: 340 SSVVDSDDP 348 S + D P Sbjct: 290 SKIYDESHP 298 >gi|326538700|gb|ADZ86915.1| phage-related integrase [Brucella melitensis M5-90] Length = 303 Score = 43.1 bits (100), Expect = 0.065, Method: Compositional matrix adjust. Identities = 60/268 (22%), Positives = 104/268 (38%), Gaps = 19/268 (7%) Query: 62 NSPRKKPTTLKW--LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD-----FDY-RK 113 N R P K+ +I+ Y+ S + LA +++ ++ + D+I +K GD FD +K Sbjct: 8 NDSRVIPDASKFRAVITAYKSSHDYQKLADSTKRNWNGWLDRIGKKFGDLSIAQFDLPQK 67 Query: 114 I--TTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171 I + R + T +Q L+ RVL ++ NPC +++ + Sbjct: 68 IRPVIRKWRGEFADKPRTADYGMQVLS--RVLSYAVDPLGKISQNPCEGIKQLYKNDRAA 125 Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231 WT +D+ + K+ S + A + ++GLR D R H+ +N + T K+ Sbjct: 126 IIWTDQDIARLKTKCS--PEVAWAVDLAAHTGLRAGDLLRLSWSHITDNAIILPTGKSRH 183 Query: 232 IITVELP--DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWF---KAKATKAGVNKSA 286 +P LL P N K F F + +A + Sbjct: 184 TKEAVIPLYAELRALLQTIPRRSPIVLTNTRKAPWTVNGFGSSFSDCREEAKLGDRDLHF 243 Query: 287 HGVRKFSATISADAGATAHELMATYGWK 314 H R +AT AG + + GW+ Sbjct: 244 HDFRGTAATKFYIAGLSERVIAEIMGWE 271 >gi|301311823|ref|ZP_07217745.1| site-specific recombinase, phage integrase family [Bacteroides sp. 20_3] gi|300829925|gb|EFK60573.1| site-specific recombinase, phage integrase family [Bacteroides sp. 20_3] Length = 380 Score = 43.1 bits (100), Expect = 0.065, Method: Compositional matrix adjust. Identities = 56/219 (25%), Positives = 92/219 (42%), Gaps = 31/219 (14%) Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR-PWTKED---MQQFKS 184 TP +A + T++R AVR+ + NP +E TE I+ P +K D +++ K Sbjct: 161 TPKTAHSYYTTLRTALNEAVRERLIESNPWYKLE----MTEKIKVPESKRDFLTIEEIKK 216 Query: 185 -----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQKTGTIITV 235 F++E Q R A+ F + GLR SD + + + + + S+ KT + + Sbjct: 217 MIATPFFNE--QVRQAYLFSCFCGLRISDIRKLRWRDISISGGQWLVSVVMTKTTNPVYI 274 Query: 236 ELPDGFMKLL----AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGV 289 L +K L TP G + N + + K A KAGV K+ H Sbjct: 275 PLSSQAVKWLPERNGCTPDGLVFGGLP------NTSNLCVSLKNWADKAGVKKNVTFHTA 328 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 R A + GA + + G ++V + Y K D+ Sbjct: 329 RHSCAVLLLTLGADIYTVSKILGHRSVRATQVYAKIVDK 367 >gi|269926944|ref|YP_003323567.1| integrase family protein [Thermobaculum terrenum ATCC BAA-798] gi|269790604|gb|ACZ42745.1| integrase family protein [Thermobaculum terrenum ATCC BAA-798] Length = 310 Score = 43.1 bits (100), Expect = 0.065, Method: Compositional matrix adjust. Identities = 43/217 (19%), Positives = 90/217 (41%), Gaps = 16/217 (7%) Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 G + R + PS+ + + +++ F++ V + V NP + P+ + + + +++ Sbjct: 66 GNQDRAYAPSTQARKMAAIKSFFQFLVAKSVVDQNPASDLISPRVQKYWPKAISVQEVNM 125 Query: 182 FKSFWS-----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236 + S EG + R E L +GLR S+ V + + +K G V Sbjct: 126 LLAAASDSETPEGIRDRAMLEVLYRTGLRVSELVSLNVDDINLDESHLKCIGRGKTRKVP 185 Query: 237 LPDGFMKLLAM-----TPI-----GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-S 285 L + +L + P+ ++ F+N+ Q++ F + KA A++AG+ + Sbjct: 186 LSQPAVDVLKLYLERSRPLLVRGQDEQALFVNHRGQRLTRQGFWLILKAYASEAGIKGIT 245 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 H +R A D G ++ G ++ + Y Sbjct: 246 PHTLRHSFAAHMIDGGIDLRQVQEWLGHASITTTQVY 282 >gi|327404137|ref|YP_004344975.1| Tyrosine recombinase xerC [Fluviicola taffensis DSM 16823] gi|327319645|gb|AEA44137.1| Tyrosine recombinase xerC [Fluviicola taffensis DSM 16823] Length = 293 Score = 43.1 bits (100), Expect = 0.066, Method: Compositional matrix adjust. Identities = 57/281 (20%), Positives = 117/281 (41%), Gaps = 30/281 (10%) Query: 67 KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG---DFDYRKITTKHIRS-- 121 K + + +L E R S H + +++E +Q + S ++R++ + +R+ Sbjct: 4 KDSFIHYLEVEKRYSKH-------TILAYEEDLNQFVSFSELKESVEWREVNYQLVRAWV 56 Query: 122 -GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK--RKTEGIRPWTKED 178 G+ + + + ++ +R FKW + + + NP L + PK ++ T+ D Sbjct: 57 VGLLESGQSNRTVSRKISCLRSFFKWLINEGKIGENPMLRIRGPKVEKRLPQFVKQTEID 116 Query: 179 MQQFKSFWS---EGSQPRLAFEFLLYSGLRCSDSCRA---GVQHLQNNIFSIKTQKTGTI 232 + + +S EG + RL FE +G+R S+ V + + + ++ Sbjct: 117 GARIEGLFSSNFEGVRDRLMFELFYQTGIRLSELIELKNKDVSSVSIKVLGKRNKERIIP 176 Query: 233 ITVELPDGFMKLLAMTPIGKET---FFINNDKQKMNATQFSIWFKAKATKAGVN----KS 285 I EL + + ++ P G ++ F+ D +K+ + +F ++ K V KS Sbjct: 177 IGQELHEIILAYQSIKPGGPDSQILLFVKKDGRKL-SPKF-VYRKINTYLGSVTNVQKKS 234 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 H +R AT + GA L G + + YT + Sbjct: 235 PHILRHTFATHMLNNGAGLETLKELLGHANLSATQVYTHNS 275 >gi|256369391|ref|YP_003106899.1| site-specific recombinase, phage integrase family [Brucella microti CCM 4915] gi|255999551|gb|ACU47950.1| site-specific recombinase, phage integrase family [Brucella microti CCM 4915] Length = 341 Score = 43.1 bits (100), Expect = 0.066, Method: Compositional matrix adjust. Identities = 60/268 (22%), Positives = 104/268 (38%), Gaps = 19/268 (7%) Query: 62 NSPRKKPTTLKW--LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD-----FDY-RK 113 N R P K+ +I+ Y+ S + LA +++ ++ + D+I +K GD FD +K Sbjct: 46 NDSRVIPDASKFRAVITAYKSSHDYQKLADSTKRNWNGWLDRIGKKFGDLSIAQFDLPQK 105 Query: 114 I--TTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171 I + R + T +Q L+ RVL ++ NPC +++ + Sbjct: 106 IRPVIRKWRGEFADKPRTADYGMQVLS--RVLSYAVDPLGKISQNPCEGIKQLYKNDRAA 163 Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231 WT +D+ + K+ S + A + ++GLR D R H+ +N + T K+ Sbjct: 164 IIWTDQDIARLKTKCS--PEVAWAVDVAAHTGLRAGDLLRLSWSHITDNAIILPTGKSRH 221 Query: 232 IITVELP--DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWF---KAKATKAGVNKSA 286 +P LL P N K F F + +A + Sbjct: 222 TKEAVIPLYAELRALLQTIPRRSPIVLTNTRKAPWTVNGFGSSFSDCREEAKLGDRDLHF 281 Query: 287 HGVRKFSATISADAGATAHELMATYGWK 314 H R +AT AG + + GW+ Sbjct: 282 HDFRGTAATKFYIAGLSERVIAEIMGWE 309 >gi|237722727|ref|ZP_04553208.1| bacteriophage integrase [Bacteroides sp. 2_2_4] gi|293373708|ref|ZP_06620055.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] gi|317473968|ref|ZP_07933247.1| phage integrase [Bacteroides eggerthii 1_2_48FAA] gi|229448537|gb|EEO54328.1| bacteriophage integrase [Bacteroides sp. 2_2_4] gi|292631363|gb|EFF49994.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] gi|316909810|gb|EFV31485.1| phage integrase [Bacteroides eggerthii 1_2_48FAA] Length = 380 Score = 43.1 bits (100), Expect = 0.067, Method: Compositional matrix adjust. Identities = 56/219 (25%), Positives = 92/219 (42%), Gaps = 31/219 (14%) Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR-PWTKED---MQQFKS 184 TP +A + T++R AVR+ + NP +E TE I+ P +K D +++ K Sbjct: 161 TPKTAHSYYTTLRTALNEAVRERLIESNPWYKLE----MTEKIKVPESKRDFLTIEEIKK 216 Query: 185 -----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQKTGTIITV 235 F++E Q R A+ F + GLR SD + + + + + S+ KT + + Sbjct: 217 MIATPFFNE--QVRQAYLFSCFCGLRISDIRKLRWRDISISGGQWLVSVVMTKTTNPVYI 274 Query: 236 ELPDGFMKLL----AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGV 289 L +K L TP G + N + + K A KAGV K+ H Sbjct: 275 PLSSQAVKWLPERNGCTPDGLVFGGLP------NTSNLCVSLKNWADKAGVKKNVTFHTA 328 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 R A + GA + + G ++V + Y K D+ Sbjct: 329 RHSCAVLLLTLGADIYTVSKILGHRSVRATQVYAKIVDK 367 >gi|294828085|ref|NP_712528.2| integrase/recombinase XerD [Leptospira interrogans serovar Lai str. 56601] gi|302393797|sp|Q7ZAM8|XERC_LEPIN RecName: Full=Tyrosine recombinase xerC gi|302393800|sp|Q72RY9|XERC_LEPIC RecName: Full=Tyrosine recombinase xerC gi|293385933|gb|AAN49546.2| integrase/recombinase XerD [Leptospira interrogans serovar Lai str. 56601] Length = 311 Score = 43.1 bits (100), Expect = 0.068, Method: Compositional matrix adjust. Identities = 45/202 (22%), Positives = 75/202 (37%), Gaps = 16/202 (7%) Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS------ 190 L+S+R +K +R++ V NP + PK + E + + + ++ F SE + Sbjct: 89 LSSLRTFYKVLLREDLVKSNPATQLSFPKVRKEVPKNFRINETEEILEFESENASEVSEI 148 Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-----TIITVELPDGFMKLL 245 + R E L SGLR + A + L ++ +K G E K L Sbjct: 149 RDRAMIEVLYSSGLRVFELVNAKLNSLSKDLTVLKVLGKGRKERFVYFGKEAVSSLQKYL 208 Query: 246 AMTPIG---KETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADA 300 + E F+N +K+ + K G K+ H R AT DA Sbjct: 209 EYRNVSFPDAEEIFLNQRGKKLTTRGVRYILNERRKKMGWEKTITPHKFRHTFATDLLDA 268 Query: 301 GATAHELMATYGWKTVDQAETY 322 GA + G ++ + Y Sbjct: 269 GAEIRAVQELLGHSSLSTTQIY 290 >gi|150397133|ref|YP_001327600.1| hypothetical protein Smed_1931 [Sinorhizobium medicae WSM419] gi|150028648|gb|ABR60765.1| hypothetical protein Smed_1931 [Sinorhizobium medicae WSM419] Length = 388 Score = 43.1 bits (100), Expect = 0.068, Method: Compositional matrix adjust. Identities = 57/268 (21%), Positives = 91/268 (33%), Gaps = 45/268 (16%) Query: 3 PSLRLPPFVTKERTRHGKIIYYFRKGHGRRI----RLPYPHESTFIPAYMSALTGSTPKR 58 PS+ LP + KE + I + + RLP F P A Sbjct: 30 PSIALPEPLEKEFSERLSICEAMARDEKGFLLDGKRLPDLKSKEFWPEATKA------HE 83 Query: 59 EYINSPRKKPTTLKWLISEYRKSAH--WGSLAVNSRISFESYFDQIIRKSGDFDYRKITT 116 +I R+ K L+ ++ + W LA +++ + + D I GD +TT Sbjct: 84 AFIRRGRQGIKDFKALVEAFQSETNPFWTKLAASTQRGYRTSGDIIKETWGDDLPVDLTT 143 Query: 117 KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176 + +++ TP+ A QF + L W + Y N E K G PW Sbjct: 144 VDAQDAIDALGETPAKANQFRAFLSRLMAWGASRGYCKTNVVEMTE----KIPGGEPWVP 199 Query: 177 EDMQQFKSFWSEGSQPRLAFEFLL---------------YSGLRCSDSCRAGVQHLQNNI 221 W P AFE LL ++G R D N Sbjct: 200 ---------W-----PNWAFEILLEHAPFHMQMIAMSAFFTGQRQGDVLAMTKPKAGENT 245 Query: 222 FSIKTQKTGTIITVELPDGFMKLLAMTP 249 +++ QKTG + + + + K + P Sbjct: 246 IAVRAQKTGNTVWIPIHFAYRKWIDRVP 273 >gi|255326004|ref|ZP_05367092.1| tyrosine recombinase XerC [Rothia mucilaginosa ATCC 25296] gi|255296895|gb|EET76224.1| tyrosine recombinase XerC [Rothia mucilaginosa ATCC 25296] Length = 358 Score = 43.1 bits (100), Expect = 0.069, Method: Compositional matrix adjust. Identities = 66/278 (23%), Positives = 103/278 (37%), Gaps = 38/278 (13%) Query: 79 RKSAHWGSLAVNSRIS-FESYFDQIIRKSGDFDYRKITTKHIRSGVES---RKHTPSSAI 134 R H + S IS E +F + R+ G I IR + S R+ S+ Sbjct: 68 RYEKHRSEETIRSYISDLEGFFGYMARR-GVRHLDSIDASPIREWLGSLHLRQAARSTVA 126 Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE--GSQP 192 + +++R F WA +E V NP + PKR+ ++E M Q + E P Sbjct: 127 RRGSTLRTFFTWAQEEELVHANPTRGMRTPKRENHLPPVLSREQMNQLLTTLQERRAQDP 186 Query: 193 RLA--------FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244 R A E L SG+R S+ +Q + +++ G V +P G L Sbjct: 187 RDARLLRLEAVVEVLYASGMRISELTGLDLQSVDRANKTVRVLGKGNKERV-VPLGTPAL 245 Query: 245 LAMT-----------PIGKE---TFFINNDKQKMNATQF-----SIWFKAKATKAGVNKS 285 A+ P G + FI + NA Q + + T+A Sbjct: 246 KALNRWVSYGRPQWIPEGAQGVTALFIGPRGGRANARQIREDLTRLLRTVENTQA---SG 302 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 AH +R +AT D GA + G ++ + YT Sbjct: 303 AHVLRHSAATHLVDGGADIRSVQELLGHSSLATTQIYT 340 >gi|253997434|ref|YP_003049498.1| tyrosine recombinase XerD [Methylotenera mobilis JLW8] gi|253984113|gb|ACT48971.1| tyrosine recombinase XerD [Methylotenera mobilis JLW8] Length = 302 Score = 43.1 bits (100), Expect = 0.069, Method: Compositional matrix adjust. Identities = 48/223 (21%), Positives = 82/223 (36%), Gaps = 41/223 (18%) Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS-- 187 P S + + S+R +++ +R+ +AI+P L +E PK + +E++ + + Sbjct: 74 PRSIGRLIASLRRFYRYNLRENLIAIDPTLQIESPKLPRSLPKSLNEEEVMALLNAPNVD 133 Query: 188 --EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245 G + + E L SGLR S+ + SIKT + +V G Sbjct: 134 DVVGLRDKAMLELLYASGLRVSE------------LVSIKTSEVSMSDSVVRVTGKGSKT 181 Query: 246 AMTPIGK-----------------------ETFFINNDKQKMNATQFSIWFKAKATKAGV 282 + P+G+ + F+ N M F K A AG+ Sbjct: 182 RLVPMGENAVEWISHYLKAARPQILQNRLSDALFVTNRGDAMTRQTFWHMIKRYALLAGI 241 Query: 283 NK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 K S H +R AT + GA + G + + YT Sbjct: 242 TKHMSPHVLRHAFATHLLNHGADLRVVQMLLGHSDISTTQIYT 284 >gi|225025733|ref|ZP_03714925.1| hypothetical protein EIKCOROL_02637 [Eikenella corrodens ATCC 23834] gi|224941514|gb|EEG22723.1| hypothetical protein EIKCOROL_02637 [Eikenella corrodens ATCC 23834] Length = 301 Score = 43.1 bits (100), Expect = 0.070, Method: Compositional matrix adjust. Identities = 54/266 (20%), Positives = 115/266 (43%), Gaps = 32/266 (12%) Query: 87 LAVNSRISFESYFDQIIRK--SGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLF 144 LA N+ + +++ R+ + D+++ + + V + P+S ++ L++++ L+ Sbjct: 29 LAANTLAGYRRDLEKVARRLHAQGLDWQQADADALANAVYAPDEKPASQVRALSAVKQLY 88 Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-------GSQPRLAFE 197 + Q + NP + RP R+ + P E Q + + G + + E Sbjct: 89 GFLQLQNRRSDNPAQHL-RPPRQGRALPPLIGE--AQIDALLAAPDTETIFGLRDKAVLE 145 Query: 198 FLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIIT------VELPDGFMK-----L 244 L +GLR S++ + +Q L Q + ++ + I V + ++K L Sbjct: 146 TLYATGLRVSEAAQMQLQDLDLQRGVVTVIGKGNKQRIVPLGAEAVYWLERYLKTARGEL 205 Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAK--ATKAGVNK-SAHGVRKFSATISADAG 301 L TP F+ +++ ++ +W K A +AG+++ S HG+R AT + G Sbjct: 206 LKHTPCD----FVFVGQKRSGISRQLVWQMVKRYAAEAGISELSPHGLRHAFATHLVNHG 261 Query: 302 ATAHELMATYGWKTVDQAETYTKGAD 327 A + G +++ + YT A+ Sbjct: 262 ADLRSVQMMLGHASLNTTQIYTHVAN 287 >gi|330910760|gb|EGH39270.1| phage integrase [Escherichia coli AA86] Length = 357 Score = 43.1 bits (100), Expect = 0.070, Method: Compositional matrix adjust. Identities = 34/147 (23%), Positives = 64/147 (43%), Gaps = 2/147 (1%) Query: 93 ISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQ 150 + + S I RK D I+TK + + + + + +SA +++ +F+ A+ + Sbjct: 98 LDYASKIRAIRRKLPDKPLTDISTKEVAAMINTYVAEGKAASAKLIRSTLVDVFREAIAE 157 Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSC 210 +VA NP + K + R E ++ + + RLA + + +G R D C Sbjct: 158 GHVATNPVTATRTAKSEVRRSRLTANEYVEIYHAAKPLPIWLRLAMDLAVVTGQRVGDLC 217 Query: 211 RAGVQHLQNNIFSIKTQKTGTIITVEL 237 R + +N IK KTG + + L Sbjct: 218 RMKWSDINDNHLHIKQSKTGAKLAIPL 244 >gi|320321405|gb|EFW77525.1| phage integrase family site specific recombinase [Pseudomonas syringae pv. glycinea str. B076] gi|320331161|gb|EFW87128.1| phage integrase family site specific recombinase [Pseudomonas syringae pv. glycinea str. race 4] gi|330882731|gb|EGH16880.1| phage integrase family site specific recombinase [Pseudomonas syringae pv. glycinea str. race 4] Length = 320 Score = 42.7 bits (99), Expect = 0.071, Method: Compositional matrix adjust. Identities = 45/207 (21%), Positives = 86/207 (41%), Gaps = 27/207 (13%) Query: 99 FDQIIRKSGDFDYRKITTKHI---RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAI 155 F I + D+R++T H+ R+ +E R ++ + L ++ LF + +A Sbjct: 52 FSAFIGLASADDFRQVTRSHVLAWRANLEQRGLAGATIRRKLAALASLFDHLLESNAIAG 111 Query: 156 -NPCLSVERPK-RKTEGIRPWTKEDMQQFKSFWS-------EGSQPRLAFEFLLYSGLRC 206 NP V+RPK EG P + Q K+ +G + R LLY GLR Sbjct: 112 GNPVHGVKRPKIESNEGKTPALGD--HQAKALLEAPDESTLKGLRDRAMLAVLLYHGLRR 169 Query: 207 SDSCRAGVQHLQN--NIFSIKTQKTGTIITVELPDGFMKLLAMTPI--GKETFFINNDKQ 262 ++ + V +Q I +K G G ++ L + P+ G+ +++ Sbjct: 170 EEAAQLQVSDIQERRGIQHLKIHGKG---------GKVRYLPLHPVAAGRIHWYLERSGH 220 Query: 263 KMNATQFSIWFKAKATKAGVNKSAHGV 289 ++ + ++ + G + SA+G+ Sbjct: 221 HLDDKKVPLFISLRGKSTGASISANGI 247 >gi|325288214|ref|YP_004264395.1| integrase family protein [Syntrophobotulus glycolicus DSM 8271] gi|324963615|gb|ADY54394.1| integrase family protein [Syntrophobotulus glycolicus DSM 8271] Length = 403 Score = 42.7 bits (99), Expect = 0.073, Method: Compositional matrix adjust. Identities = 33/124 (26%), Positives = 60/124 (48%), Gaps = 13/124 (10%) Query: 89 VNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES---RKHTPSSAIQFLTSMRVLFK 145 ++ RIS YF ++ D ++T +HI+ +S HTP++ I + +R + Sbjct: 114 LDGRIS--RYFTEL-----DITLAEVTPQHIQDFHQSIFDEGHTPNTVIHYHAVLRRALQ 166 Query: 146 WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP-RLAFEFLLYSGL 204 AV++E + NP V+RPK+ + ++ E+M F + P + + Y GL Sbjct: 167 NAVKKEIIGSNPADRVDRPKKNVYHAQFYSAEEMMAL--FDAISDDPLEICVKLAAYYGL 224 Query: 205 RCSD 208 R S+ Sbjct: 225 RRSE 228 >gi|299821615|ref|ZP_07053503.1| tyrosine recombinase XerD [Listeria grayi DSM 20601] gi|299817280|gb|EFI84516.1| tyrosine recombinase XerD [Listeria grayi DSM 20601] Length = 296 Score = 42.7 bits (99), Expect = 0.073, Method: Compositional matrix adjust. Identities = 50/248 (20%), Positives = 96/248 (38%), Gaps = 23/248 (9%) Query: 98 YFDQIIRKSGDFDYRKITTKHIRSGV---ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVA 154 YFD + G D IT + + + +P + ++L S+R F + + + + Sbjct: 32 YFDSFLEIEGITDPNSITRGTVVAFIAFARDADKSPRTIARYLASLRSFFHFLLHDQKMD 91 Query: 155 INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSC 210 +P + +E PK+ + E++++ + G + + E L +GLR S+ Sbjct: 92 HDPMIQIETPKQTKALPKVLHLEEVEKLLAAPDPNSILGLRDQAMLEILYATGLRVSELI 151 Query: 211 RAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET-------------FFI 257 + L ++ I+T G + +P G +T +E F+ Sbjct: 152 HLKLDDLHLHMGFIQTIGKGDKERI-IPLGHTATAVLTKYLEEARPKLRKPKYRNDYVFL 210 Query: 258 NNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKT 315 N+ + F K A KAG++K + H +R AT + GA + G Sbjct: 211 NHHGGGLTRQGFWKLLKQLAQKAGIDKPITPHTLRHSFATHLLENGADLRSVQELLGHAD 270 Query: 316 VDQAETYT 323 + + YT Sbjct: 271 ISTTQIYT 278 >gi|317051491|ref|YP_004112607.1| integrase family protein [Desulfurispirillum indicum S5] gi|316946575|gb|ADU66051.1| integrase family protein [Desulfurispirillum indicum S5] Length = 330 Score = 42.7 bits (99), Expect = 0.074, Method: Compositional matrix adjust. Identities = 50/217 (23%), Positives = 84/217 (38%), Gaps = 25/217 (11%) Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP-WTKEDMQQFKSFWS 187 + S+ L +R +F W + ++ NP ++ PK + P + K+D Q+ + Sbjct: 102 SKSTYANVLCYVRAIFNWLQYEGFLEENPARDLKSPKGAYKNEMPVFLKDDEQKRLRAYL 161 Query: 188 EGSQPRL-------AFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQKTGTIITVELP 238 G + +LY+G+R S+ C+ + H Q F I T+K + + Sbjct: 162 NGLERNFHNDRDTAVMLCVLYTGMRASEICQLTRRNFHRQGKAFQI-TRKGQKEQILPIA 220 Query: 239 DGFMKLLA------MTPIGKETFFINNDKQKMNATQFSIW------FKAKATKAGVNKSA 286 D M++L M I + FF + + + T + IW KA + A Sbjct: 221 DALMEILQFYWYEHMDSIDSDFFFCRTNGKPL--TPYIIWQRTSLHIKAAGIDLPRKRGA 278 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 H +R AT G E+ G V E YT Sbjct: 279 HLLRHTFATNLVRKGVNLIEIQRLLGHSHVAVTEIYT 315 >gi|71725244|ref|YP_272203.1| phage integrase family site specific recombinase [Pseudomonas syringae pv. phaseolicola 1448A] gi|71558834|gb|AAZ38044.1| site-specific recombinase, phage integrase family [Pseudomonas syringae pv. phaseolicola 1448A] Length = 320 Score = 42.7 bits (99), Expect = 0.077, Method: Compositional matrix adjust. Identities = 43/196 (21%), Positives = 81/196 (41%), Gaps = 27/196 (13%) Query: 110 DYRKITTKHI---RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAI-NPCLSVERPK 165 D+R++T H+ R+ +E R ++ + L ++ LF + VA NP V+RP+ Sbjct: 63 DFRQVTRSHVLAWRADLEQRGLAGATIRRKLAALASLFDHLLDNNAVAGGNPVHGVKRPR 122 Query: 166 -RKTEGIRPWTKEDMQQFKSFWS-------EGSQPRLAFEFLLYSGLRCSDSCRAGVQHL 217 EG P + Q K+ +G + R LLY GLR ++ + V + Sbjct: 123 IESNEGKTPALGD--HQAKALLEAPDESTLKGRRDRAMLAVLLYHGLRREEAAQLQVSDI 180 Query: 218 QN--NIFSIKTQKTGTIITVELPDGFMKLLAMTPI--GKETFFINNDKQKMNATQFSIWF 273 Q I +K G G ++ L + P+ G+ ++ + + + ++ Sbjct: 181 QERRGIQHLKIHGKG---------GKVRYLPLHPVAAGRIHLYLERSEHHLADRKVPLFI 231 Query: 274 KAKATKAGVNKSAHGV 289 + G SA+G+ Sbjct: 232 SLRGKSTGAGVSANGI 247 >gi|16077547|ref|NP_388361.1| phage integrase [Bacillus subtilis subsp. subtilis str. 168] gi|221308305|ref|ZP_03590152.1| hypothetical protein Bsubs1_02718 [Bacillus subtilis subsp. subtilis str. 168] gi|221312627|ref|ZP_03594432.1| hypothetical protein BsubsN3_02694 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221317550|ref|ZP_03598844.1| hypothetical protein BsubsJ_02653 [Bacillus subtilis subsp. subtilis str. JH642] gi|221321826|ref|ZP_03603120.1| hypothetical protein BsubsS_02724 [Bacillus subtilis subsp. subtilis str. SMY] gi|81556749|sp|P96629|INT_BACSU RecName: Full=ICEBs1 integrase gi|1881291|dbj|BAA19318.1| ydcL [Bacillus subtilis] gi|2632780|emb|CAB12287.1| putative phage integrase [Bacillus subtilis subsp. subtilis str. 168] Length = 368 Score = 42.7 bits (99), Expect = 0.079, Method: Compositional matrix adjust. Identities = 42/166 (25%), Positives = 73/166 (43%), Gaps = 21/166 (12%) Query: 81 SAHWGSLAVNSRISFESYFDQIIRKS-GDF----DYRKITTKHIRSGVESRKHTPSSAI- 134 S + S ++S+ ++ II K D+ D +KIT + I + RKH + + Sbjct: 68 SIYLASCEIDSKPNYYQNQKYIINKHISDYFLKSDIQKITHREI---TDFRKHLMETGLS 124 Query: 135 -----QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 +TS+ +F AV +E + NPC +V+R + ++ W E +FK F S Sbjct: 125 NKSVNNIMTSLSKIFDTAVHEEILKRNPCDNVKRLPLTRKKMKFWRPE---EFKKFISLI 181 Query: 190 SQPRLAFEFL----LYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231 Q +L F+ +GLRC + + + + I K+ T Sbjct: 182 PQDQLLFKTFYTVAFLTGLRCGEMLALQWKDIDKILLEIDVHKSCT 227 >gi|153940640|ref|YP_001391047.1| site-specific tyrosine recombinase XerC [Clostridium botulinum F str. Langeland] gi|152936536|gb|ABS42034.1| site-specific recombinase, phage integrase family [Clostridium botulinum F str. Langeland] gi|322806030|emb|CBZ03597.1| putative integrase/recombinase [Clostridium botulinum H04402 065] Length = 326 Score = 42.7 bits (99), Expect = 0.079, Method: Compositional matrix adjust. Identities = 56/263 (21%), Positives = 116/263 (44%), Gaps = 22/263 (8%) Query: 96 ESYFDQI-IRKSGDFDYRKITTKHI---RSGVESRKHTPSSA-IQFLTSMRVLFKWAV-R 149 E+ F+ I I+ D D + I+ + S VE+ ++ S A + + +++ F++ + Sbjct: 59 ETEFNDIEIKDISDEDIKNISLTDLFAFVSFVENYRNNGSYAKARKVATLKSFFRFLQGK 118 Query: 150 QEYVAINPCLSVERPK-RKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF-EFLLYSGLRCS 207 + + NP L +E PK K + E + S + + L L GLR S Sbjct: 119 VKIIKENPALELESPKISKRNPVYLTLDESKRLLSSIDGKFKERDLCIVTMFLNCGLRLS 178 Query: 208 DSCRAGVQHLQNNIFSI--KTQKTGTI----ITVELPDGFM---KLLAMTPIGKETFFIN 258 + C + +++N+I ++ K K T+ ++ + ++ K + + K+ F++ Sbjct: 179 ELCGINISNIKNDILTVVGKGNKERTVYLNKACIKTLNDYLSVRKEMGEKIVDKDALFLS 238 Query: 259 NDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKFSATIS-ADAGATAHELMATYGWK 314 + ++N + K KAG++ S H +R +AT+ G L G + Sbjct: 239 KNYTRINKRSVEMLVKKYVKKAGLDGEKYSPHKLRHTAATLMYKHGGVDIRSLQMILGHE 298 Query: 315 TVDQAETYTK-GADRIRLGIKNS 336 + + YT +DR+R +K++ Sbjct: 299 NISTTQIYTHVDSDRLREAVKSN 321 >gi|148379752|ref|YP_001254293.1| site-specific recombinase, phage integrase family [Clostridium botulinum A str. ATCC 3502] gi|153934110|ref|YP_001384049.1| site-specific tyrosine recombinase XerC [Clostridium botulinum A str. ATCC 19397] gi|153936224|ref|YP_001387591.1| site-specific tyrosine recombinase XerC [Clostridium botulinum A str. Hall] gi|168180365|ref|ZP_02615029.1| site-specific recombinase, phage integrase family [Clostridium botulinum NCTC 2916] gi|226949034|ref|YP_002804125.1| site-specific recombinase, phage integrase family [Clostridium botulinum A2 str. Kyoto] gi|148289236|emb|CAL83332.1| tyrosine recombinase [Clostridium botulinum A str. ATCC 3502] gi|152930154|gb|ABS35654.1| site-specific recombinase, phage integrase family [Clostridium botulinum A str. ATCC 19397] gi|152932138|gb|ABS37637.1| site-specific recombinase, phage integrase family [Clostridium botulinum A str. Hall] gi|182668709|gb|EDT80687.1| site-specific recombinase, phage integrase family [Clostridium botulinum NCTC 2916] gi|226843631|gb|ACO86297.1| site-specific recombinase, phage integrase family [Clostridium botulinum A2 str. Kyoto] Length = 326 Score = 42.7 bits (99), Expect = 0.080, Method: Compositional matrix adjust. Identities = 56/263 (21%), Positives = 116/263 (44%), Gaps = 22/263 (8%) Query: 96 ESYFDQI-IRKSGDFDYRKITTKHI---RSGVESRKHTPSSA-IQFLTSMRVLFKWAV-R 149 E+ F+ I I+ D D + I+ + S VE+ ++ S A + + +++ F++ + Sbjct: 59 ETEFNDIEIKDISDEDIKNISLTDLFAFVSFVENYRNNGSYAKARKVATLKSFFRFLQGK 118 Query: 150 QEYVAINPCLSVERPK-RKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF-EFLLYSGLRCS 207 + + NP L +E PK K + E + S + + L L GLR S Sbjct: 119 VKIIKENPALELESPKISKRNPVYLTLDESKRLLSSIDGKFKERDLCIVTMFLNCGLRLS 178 Query: 208 DSCRAGVQHLQNNIFSI--KTQKTGTI----ITVELPDGFM---KLLAMTPIGKETFFIN 258 + C + +++N+I ++ K K T+ ++ + ++ K + + K+ F++ Sbjct: 179 ELCGINISNIKNDILTVVGKGNKERTVYLNKACIKTLNDYLNVRKEMGEKIVDKDALFLS 238 Query: 259 NDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKFSATIS-ADAGATAHELMATYGWK 314 + ++N + K KAG++ S H +R +AT+ G L G + Sbjct: 239 KNYTRINKRSVEMLVKKYVKKAGLDGEKYSPHKLRHTAATLMYKHGGVDIRSLQMILGHE 298 Query: 315 TVDQAETYTK-GADRIRLGIKNS 336 + + YT +DR+R +K++ Sbjct: 299 NISTTQIYTHVDSDRLREAVKSN 321 >gi|170754911|ref|YP_001781341.1| site-specific tyrosine recombinase XerC [Clostridium botulinum B1 str. Okra] gi|169120123|gb|ACA43959.1| site-specific recombinase, phage integrase family [Clostridium botulinum B1 str. Okra] Length = 326 Score = 42.7 bits (99), Expect = 0.081, Method: Compositional matrix adjust. Identities = 56/263 (21%), Positives = 116/263 (44%), Gaps = 22/263 (8%) Query: 96 ESYFDQI-IRKSGDFDYRKITTKHI---RSGVESRKHTPSSA-IQFLTSMRVLFKWAV-R 149 E+ F+ I I+ D D + I+ + S VE+ ++ S A + + +++ F++ + Sbjct: 59 EAEFNDIEIKDISDEDIKNISLTDLFAFVSFVENYRNNGSYAKARKVATLKSFFRFLQGK 118 Query: 150 QEYVAINPCLSVERPK-RKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF-EFLLYSGLRCS 207 + + NP L +E PK K + E + S + + L L GLR S Sbjct: 119 VKIIKENPALELESPKISKRNPVYLTLDESKRLLSSIDGKFKERDLCIVTMFLNCGLRLS 178 Query: 208 DSCRAGVQHLQNNIFSI--KTQKTGTI----ITVELPDGFM---KLLAMTPIGKETFFIN 258 + C + +++N+I ++ K K T+ ++ + ++ K + + K+ F++ Sbjct: 179 ELCGINISNIKNDILTVVGKGNKERTVYLNKACIKTLNDYLSVRKEMGEKIVDKDALFLS 238 Query: 259 NDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKFSATIS-ADAGATAHELMATYGWK 314 + ++N + K KAG++ S H +R +AT+ G L G + Sbjct: 239 KNYTRINKRSVEMLVKKYVKKAGLDGEKYSPHKLRHTAATLMYKHGGVDIRSLQMILGHE 298 Query: 315 TVDQAETYTK-GADRIRLGIKNS 336 + + YT +DR+R +K++ Sbjct: 299 NISTTQIYTHVDSDRLREAVKSN 321 >gi|228926906|ref|ZP_04089972.1| DNA integration/recombination/invertion protein [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228936985|ref|ZP_04099727.1| DNA integration/recombination/invertion protein [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228822700|gb|EEM68590.1| DNA integration/recombination/invertion protein [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228832641|gb|EEM78212.1| DNA integration/recombination/invertion protein [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 368 Score = 42.7 bits (99), Expect = 0.084, Method: Compositional matrix adjust. Identities = 27/111 (24%), Positives = 52/111 (46%), Gaps = 4/111 (3%) Query: 101 QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVL---FKWAVRQEYVAINP 157 II G K+ HI+ +S ++ + L R+L AV+Q ++ NP Sbjct: 95 HIIPNIGMISLHKLNVMHIQKCYQSALNSGIANNTILFQHRILTAALNLAVKQNIISRNP 154 Query: 158 CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSD 208 PK++ I+ WT+E+++QF S+ S+ + + + +G+R + Sbjct: 155 ATLAVIPKKEKSSIQTWTEEEVKQF-LLHSQESRYHIGYLLAITTGMRLGE 204 >gi|225018198|ref|ZP_03707390.1| hypothetical protein CLOSTMETH_02136 [Clostridium methylpentosum DSM 5476] gi|224948995|gb|EEG30204.1| hypothetical protein CLOSTMETH_02136 [Clostridium methylpentosum DSM 5476] Length = 348 Score = 42.7 bits (99), Expect = 0.086, Method: Compositional matrix adjust. Identities = 28/111 (25%), Positives = 51/111 (45%), Gaps = 12/111 (10%) Query: 107 GDFDYRKITTKHIRS-----GVESRKHT------PSSAIQFLTSMRVLFKWAVRQEYVAI 155 G KIT +H++ G E T P + +L+ + +F +A++ + V Sbjct: 54 GHLHMDKITVRHVQKFIHNLGEEGINQTTGGRLAPKTIHHYLSFVSTIFSYAIKMQMVKN 113 Query: 156 NPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS-EGSQPRLAFEFLLYSGLR 205 NPC V+ PK + + + +T E+ Q+F + E + + F +Y G R Sbjct: 114 NPCEHVQLPKAEQKELDCYTLEEAQEFLNLLQKEPLKYQAFFTLAIYGGFR 164 >gi|48428759|gb|AAT42408.1| site-specific recombinase XerC [Collimonas fungivorans Ter331] Length = 324 Score = 42.7 bits (99), Expect = 0.086, Method: Compositional matrix adjust. Identities = 34/112 (30%), Positives = 49/112 (43%), Gaps = 11/112 (9%) Query: 108 DFDYRKITTKHIR---SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP 164 ++ + IT HIR + + SR PSS + L++ R F+W Q +A NP V+ P Sbjct: 48 NWQFAAITHFHIRKFAAQLHSRGLNPSSIARKLSAWRGFFEWLAEQTTLASNPVEGVKAP 107 Query: 165 KRKTEGIRPWTKEDMQQFKS----FWSEGSQPRLA----FEFLLYSGLRCSD 208 KR + +D + GS L FE L SGLR S+ Sbjct: 108 KRTKPLPKAMAADDAIHLVASGNPLADAGSSMALCNQAMFELLYSSGLRVSE 159 >gi|237795202|ref|YP_002862754.1| site-specific recombinase, phage integrase family [Clostridium botulinum Ba4 str. 657] gi|229261716|gb|ACQ52749.1| site-specific recombinase, phage integrase family [Clostridium botulinum Ba4 str. 657] Length = 326 Score = 42.7 bits (99), Expect = 0.089, Method: Compositional matrix adjust. Identities = 56/263 (21%), Positives = 116/263 (44%), Gaps = 22/263 (8%) Query: 96 ESYFDQI-IRKSGDFDYRKITTKHI---RSGVESRKHTPSSA-IQFLTSMRVLFKWAV-R 149 E+ F+ I I+ D D + I+ + S VE+ ++ S A + + +++ F++ + Sbjct: 59 ETEFNDIEIKDISDEDIKNISLTDLFAFVSFVENYRNNGSYAKARKVATLKSFFRFLQGK 118 Query: 150 QEYVAINPCLSVERPK-RKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF-EFLLYSGLRCS 207 + + NP L +E PK K + E + S + + L L GLR S Sbjct: 119 VKIIKENPALELESPKISKRNPVYLTLDESKRLLSSIDGKFKERDLCIVTMFLNCGLRLS 178 Query: 208 DSCRAGVQHLQNNIFSI--KTQKTGTI----ITVELPDGFM---KLLAMTPIGKETFFIN 258 + C + +++N+I ++ K K T+ ++ + ++ K + + K+ F++ Sbjct: 179 ELCGINISNIKNDILTVVGKGNKERTVYLNKACIKTLNDYLSVRKEIGEKIVDKDALFLS 238 Query: 259 NDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKFSATIS-ADAGATAHELMATYGWK 314 + ++N + K KAG++ S H +R +AT+ G L G + Sbjct: 239 KNYTRINKRSVEMLVKKYVKKAGLDGEKYSPHKLRHTAATLMYKHGGVDIRSLQMILGHE 298 Query: 315 TVDQAETYTK-GADRIRLGIKNS 336 + + YT +DR+R +K++ Sbjct: 299 NISTTQIYTHVDSDRLREAVKSN 321 >gi|170761083|ref|YP_001787113.1| site-specific tyrosine recombinase XerC [Clostridium botulinum A3 str. Loch Maree] gi|169408072|gb|ACA56483.1| site-specific recombinase, phage integrase family [Clostridium botulinum A3 str. Loch Maree] Length = 326 Score = 42.7 bits (99), Expect = 0.090, Method: Compositional matrix adjust. Identities = 56/263 (21%), Positives = 116/263 (44%), Gaps = 22/263 (8%) Query: 96 ESYFDQI-IRKSGDFDYRKITTKHI---RSGVESRKHTPSSA-IQFLTSMRVLFKWAV-R 149 E+ F+ I I+ D D + I+ + S VE+ ++ S A + + +++ F++ + Sbjct: 59 ETEFNDIEIKDISDEDIKNISLTDLFAFVSFVENYRNNGSYAKARKVATLKSFFRFLQGK 118 Query: 150 QEYVAINPCLSVERPK-RKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF-EFLLYSGLRCS 207 + + NP L +E PK K + E + S + + L L GLR S Sbjct: 119 VKIIKENPALELESPKISKRNPVYLTLDESKRLLSSIDGKFKERDLCIVTMFLNCGLRLS 178 Query: 208 DSCRAGVQHLQNNIFSI--KTQKTGTI----ITVELPDGFM---KLLAMTPIGKETFFIN 258 + C + +++N+I ++ K K T+ ++ + ++ K + + K+ F++ Sbjct: 179 ELCGINISNIKNDILTVVGKGNKERTVYLNKACIKTLNDYLSARKEMGEKIVDKDALFLS 238 Query: 259 NDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKFSATIS-ADAGATAHELMATYGWK 314 + ++N + K KAG++ S H +R +AT+ G L G + Sbjct: 239 KNYTRINKRSVEMLVKKYVKKAGLDGEKYSPHKLRHTAATLMYKHGGVDIRSLQMILGHE 298 Query: 315 TVDQAETYTK-GADRIRLGIKNS 336 + + YT +DR+R +K++ Sbjct: 299 NISTTQIYTHVDSDRLREAVKSN 321 >gi|331084833|ref|ZP_08333921.1| hypothetical protein HMPREF0987_00224 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330410927|gb|EGG90349.1| hypothetical protein HMPREF0987_00224 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 289 Score = 42.7 bits (99), Expect = 0.091, Method: Compositional matrix adjust. Identities = 32/144 (22%), Positives = 61/144 (42%), Gaps = 16/144 (11%) Query: 83 HWGSLAVNSRI---SFESYFDQIIRKSGDFDYRKI---TTKHIRSGVE--SRKHTPSSAI 134 HW ++ + ++Y++ R G K+ T HI+ + S+K+ PS+ Sbjct: 75 HWMETVCAVKLKNTTIQNYYNNYNRIKGSIQNIKLIELTQSHIQMAINEISKKYKPSTVK 134 Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS-----FWSEG 189 L ++ ++A + +A NPC + P +ED ++ + + E Sbjct: 135 SSLNALSTCLEYAEKNMIIANNPCKCIVISNYTDRSFVPIEQEDEMKYITKDMLDLFFEA 194 Query: 190 SQ---PRLAFEFLLYSGLRCSDSC 210 +Q R F LL++GLR + C Sbjct: 195 AQNCRSRYYFYILLHTGLRAGELC 218 >gi|291513999|emb|CBK63209.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301] Length = 390 Score = 42.7 bits (99), Expect = 0.091, Method: Compositional matrix adjust. Identities = 47/208 (22%), Positives = 84/208 (40%), Gaps = 20/208 (9%) Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP--WTKEDMQQFKSFWSEGSQPR 193 F + + K+A+ Q+ + NPC V T +R + E++ Q + + R Sbjct: 178 FFQRFKKVIKYAIDQDILLKNPCTGVPCVVDDT-ALRKDVLSLEEIAQLANTPYQNMDVR 236 Query: 194 LAFEFLLYSGLRCSDSCR---AGVQHLQNNIFSIKTQKTG----TIITVELPDGFMKLLA 246 AF F LY+GLR D + V + I + + TG +I+T+ L + +KL+ Sbjct: 237 RAFLFCLYAGLRYCDVVDLKYSNVDYANKTIRFDQNKTTGHSTHSIVTIPLSNTLLKLIG 296 Query: 247 MTPIGKETFF-INNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVR-KFSATISADAGA 302 P F + + + A IW +AG+ K H R F+ + + Sbjct: 297 ERPEKDGPIFTLPSHTGCLKA--LRIW----VARAGIEKHITWHCARHSFAVNLLGECHT 350 Query: 303 TAHELMATYGWKTVDQAETYTKGADRIR 330 + + G + E YT+ D ++ Sbjct: 351 DIKTVASLLGHSGLKHTEKYTRAVDSLK 378 >gi|257486889|ref|ZP_05640930.1| Phage integrase:Phage integrase, N-terminal SAM-like protein [Pseudomonas syringae pv. tabaci ATCC 11528] gi|331013460|gb|EGH93516.1| Phage integrase [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 319 Score = 42.4 bits (98), Expect = 0.092, Method: Compositional matrix adjust. Identities = 52/244 (21%), Positives = 94/244 (38%), Gaps = 27/244 (11%) Query: 99 FDQIIRKSGDFDYRKITTKHI---RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAI 155 F + +G ++R +T H+ R+ +E R ++ + L ++ LF + VA Sbjct: 52 FCSFVGLAGADEFRAVTRAHVLAWRAQLEQRGLAGATIRRKLAALASLFDHLLENNAVAG 111 Query: 156 -NPCLSVERPK-RKTEGIRPWTKEDMQQFKSFWS-------EGSQPRLAFEFLLYSGLRC 206 NP V+RP+ EG P + Q K+ +G + R LLY GLR Sbjct: 112 GNPVHGVKRPRIDSNEGKTPALAD--HQAKALLDAPPAESLKGLRDRAVLAVLLYHGLRR 169 Query: 207 SDSCRAGVQHLQN--NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM 264 ++ + LQ I ++ Q G G ++ L + P+ E + ++ Sbjct: 170 EEAAQLQTSDLQERRGIKHLRVQGKG---------GKLRWLPLHPVAAERIYAYIEQNME 220 Query: 265 NATQFSIWFKA-KATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 + F++ + +G SA G+ K + AG E + +G + Sbjct: 221 RGAGYGSLFRSLRGRSSGTGLSADGIYKIVCHWAISAGIKV-EGLGVHGLRATAATNALE 279 Query: 324 KGAD 327 AD Sbjct: 280 HDAD 283 >gi|215486111|ref|YP_002328542.1| predicted integrase [Escherichia coli O127:H6 str. E2348/69] gi|312968948|ref|ZP_07783155.1| integrase [Escherichia coli 2362-75] gi|215264183|emb|CAS08527.1| predicted integrase [Escherichia coli O127:H6 str. E2348/69] gi|312286350|gb|EFR14263.1| integrase [Escherichia coli 2362-75] Length = 357 Score = 42.4 bits (98), Expect = 0.093, Method: Compositional matrix adjust. Identities = 34/147 (23%), Positives = 64/147 (43%), Gaps = 2/147 (1%) Query: 93 ISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQ 150 + + S I RK D I+TK + + + + + +SA +++ +F+ A+ + Sbjct: 98 LDYASKIRAIRRKLPDKPLTDISTKEVAAMLNTYVAEGKAASAKLIRSTLVDVFREAIAE 157 Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSC 210 +VA NP + K + R E ++ + + RLA + + +G R D C Sbjct: 158 GHVATNPVTATRTAKSEVRRSRLTANEYVEIYHAAEPLPIWLRLAMDLAVVTGQRVGDLC 217 Query: 211 RAGVQHLQNNIFSIKTQKTGTIITVEL 237 R + +N IK KTG + + L Sbjct: 218 RMKWSDINDNHLHIKQSKTGAKLAIPL 244 >gi|325982077|ref|YP_004294479.1| hypothetical protein NAL212_1430 [Nitrosomonas sp. AL212] gi|325531596|gb|ADZ26317.1| Protein of unknown function DUF3596 [Nitrosomonas sp. AL212] Length = 361 Score = 42.4 bits (98), Expect = 0.094, Method: Compositional matrix adjust. Identities = 42/186 (22%), Positives = 73/186 (39%), Gaps = 9/186 (4%) Query: 97 SYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAIN 156 + + +I G+ ++T ++ + + LT +R +F+ E + N Sbjct: 109 AIYHHLIPTFGNLTISELTASKVKEWLSELPCSNKRKSNILTPLRQMFEELYLDEIIDKN 168 Query: 157 PCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSD---SCRAG 213 P V+ KT P+T+E++ K Q + +F YSGLR S+ C Sbjct: 169 PLSRVKNLPNKTREPEPFTQEEI--IKILNELTGQAKNLIQFAFYSGLRTSELIALCWKN 226 Query: 214 VQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWF 273 V+ QN IF + G + + G + + + P KE ++Q Q I F Sbjct: 227 VEFEQNRIFIKQAHVRGQLKDTKTKSG-KREVTLQPQAKEALL---NQQAFTGKQNQIVF 282 Query: 274 KAKATK 279 TK Sbjct: 283 HNPKTK 288 >gi|315122310|ref|YP_004062799.1| hypothetical protein CKC_02810 [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495712|gb|ADR52311.1| hypothetical protein CKC_02810 [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 40 Score = 42.4 bits (98), Expect = 0.095, Method: Composition-based stats. Identities = 20/37 (54%), Positives = 25/37 (67%) Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIK 334 A+AG +HELMA YGW + AE YTK AD+ + IK Sbjct: 2 ANAGVRSHELMAMYGWSKLSMAEVYTKEADKKKNVIK 38 >gi|45657471|ref|YP_001557.1| putative integrase/recombinase protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|45600710|gb|AAS70194.1| putative integrase/recombinase protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 332 Score = 42.4 bits (98), Expect = 0.095, Method: Compositional matrix adjust. Identities = 45/202 (22%), Positives = 75/202 (37%), Gaps = 16/202 (7%) Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS------ 190 L+S+R +K +R++ V NP + PK + E + + + ++ F SE + Sbjct: 110 LSSLRTFYKVLLREDLVKSNPATQLSFPKVRKEVPKNFRINETEEILEFESENASEVSEI 169 Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-----TIITVELPDGFMKLL 245 + R E L SGLR + A + L ++ +K G E K L Sbjct: 170 RDRAMIEVLYSSGLRVFELVNAKLNSLSKDLTVLKVLGKGRKERFVYFGKEAVSSLQKYL 229 Query: 246 AMTPIG---KETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADA 300 + E F+N +K+ + K G K+ H R AT DA Sbjct: 230 EYRNVSFPDAEEIFLNQRGKKLTTRGVRYILNERRKKMGWEKTITPHKFRHTFATDLLDA 289 Query: 301 GATAHELMATYGWKTVDQAETY 322 GA + G ++ + Y Sbjct: 290 GAEIRAVQELLGHSSLSTTQIY 311 >gi|194430644|ref|ZP_03063091.1| site-specific recombinase, phage integrase family [Escherichia coli B171] gi|194411310|gb|EDX27685.1| site-specific recombinase, phage integrase family [Escherichia coli B171] Length = 341 Score = 42.4 bits (98), Expect = 0.10, Method: Compositional matrix adjust. Identities = 45/197 (22%), Positives = 79/197 (40%), Gaps = 6/197 (3%) Query: 36 PYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISF 95 P ES + A L K E + R + T L ++ SA++ L+ ++ + Sbjct: 28 PTSRESVTLTAIKDGLAALWKKYEETVNNRDRAMTFGRLWEKFLASAYYSDLSPRTQKDY 87 Query: 96 ESYFDQIIRKSGDFDYRKITTKHIRSGVESR-KHTPSSAIQFLTSMRVLFKWAVRQEYVA 154 + +++ G I +HIR ++ R + + + A +SM ++ W + YV Sbjct: 88 LQHQKKLLAVFGKVPADSIKPEHIRRYMDKRGEQSKTQANHEKSSMSRVYSWGYERGYVK 147 Query: 155 INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR-LAFEFLLYSGLRCSDSCRAG 213 NPC V + K K KE +++ S P +A E R SD Sbjct: 148 GNPCAGVSKFKAKNRERYVTDKE----YQAVLSVAPLPVFIAMEIAYLCAARVSDVLSLK 203 Query: 214 VQHLQNNIFSIKTQKTG 230 + + N+ I+ KTG Sbjct: 204 WEQIGNDGIFIQQGKTG 220 >gi|312962849|ref|ZP_07777336.1| integrase/recombinase XerD [Pseudomonas fluorescens WH6] gi|311282876|gb|EFQ61470.1| integrase/recombinase XerD [Pseudomonas fluorescens WH6] Length = 298 Score = 42.4 bits (98), Expect = 0.10, Method: Compositional matrix adjust. Identities = 51/239 (21%), Positives = 102/239 (42%), Gaps = 23/239 (9%) Query: 112 RKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171 R++ H+ +E + + P S +FL+ +R +++ +R++ + ++P L ++ P+ Sbjct: 53 RELILDHLAWRLE-QNYKPRSTARFLSGVRGFYRYLLREKLITLDPTLQIDMPQLGRPLP 111 Query: 172 RPWTKEDMQQFKSF--WSE--GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ 227 + ++ D++ + SE G + R E L GLR ++ ++ + ++ Sbjct: 112 KSLSEADVEALLAAPDLSEAIGQRDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVM 171 Query: 228 KTGT-----------IITVE--LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFK 274 G+ I+ VE + + +LL P + F + ++M F K Sbjct: 172 GKGSKERLVPMGEEAIVWVERYMREARSELLGGRP--SDVLFPSLRGEQMTRQTFWHRIK 229 Query: 275 AKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 +A AG+ K S H +R AT + GA + G + + YT A R RL Sbjct: 230 HQAKVAGIGKTLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-RARL 287 >gi|312868308|ref|ZP_07728508.1| site-specific recombinase, phage integrase family [Streptococcus parasanguinis F0405] gi|311096053|gb|EFQ54297.1| site-specific recombinase, phage integrase family [Streptococcus parasanguinis F0405] Length = 383 Score = 42.4 bits (98), Expect = 0.10, Method: Compositional matrix adjust. Identities = 20/83 (24%), Positives = 45/83 (54%), Gaps = 1/83 (1%) Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 TP+ Q + + LF A+ + + NPC ++ + K + + +T E ++F+S++ E Sbjct: 131 TPTHINQQMIFVHKLFDIAISKGFRQDNPCDAIRKLPEKHKEMSYYTPEQFKKFESYFEE 190 Query: 189 GSQP-RLAFEFLLYSGLRCSDSC 210 P +L + L+++G+R ++ Sbjct: 191 SEYPFKLLYRVLMFTGIRMGEAL 213 >gi|291482891|dbj|BAI83966.1| hypothetical protein BSNT_00830 [Bacillus subtilis subsp. natto BEST195] Length = 368 Score = 42.4 bits (98), Expect = 0.10, Method: Compositional matrix adjust. Identities = 35/132 (26%), Positives = 59/132 (44%), Gaps = 16/132 (12%) Query: 110 DYRKITTKHIRSGVESRKHTPSSAI------QFLTSMRVLFKWAVRQEYVAINPCLSVER 163 D +KIT + I + RKH + + +TS+ +F AV +E + NPC +V+R Sbjct: 102 DIQKITHREI---TDFRKHLMETGLSNKSVNNIMTSLSKIFDTAVHEEILKRNPCDNVKR 158 Query: 164 PKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFL----LYSGLRCSDSCRAGVQHLQN 219 + ++ W E +FK F S Q +L F+ +GLRC + + + Sbjct: 159 LPLTRKKMKFWRPE---EFKKFISLIPQDQLLFKTFYTVAFLTGLRCGEMLALQWKDIDK 215 Query: 220 NIFSIKTQKTGT 231 + I K+ T Sbjct: 216 ILLEIDVHKSCT 227 >gi|229170493|ref|ZP_04298144.1| Site-specific recombinase, phage integrase [Bacillus cereus AH621] gi|228612963|gb|EEK70137.1| Site-specific recombinase, phage integrase [Bacillus cereus AH621] Length = 352 Score = 42.4 bits (98), Expect = 0.10, Method: Compositional matrix adjust. Identities = 46/210 (21%), Positives = 86/210 (40%), Gaps = 15/210 (7%) Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 +PS+ L ++RV+F++ + +E + NP V+ E I T +++++ ++ Sbjct: 111 SPSTINTRLKTLRVMFRFLIDEELMESNPMKQVKDVNEPQEEIAVLTVDELRRLLDVPNK 170 Query: 189 GS----QPRLAFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSIK--TQKTGTIITVELPDG 240 S + + LL + LR S++ V L + +++ K+ V + + Sbjct: 171 RSYSDFRNYVIMNLLLDTFLRISEALSLTVNDIDLSTKVITVRATVAKSRKARIVPIKNT 230 Query: 241 FMKLLAMTPIGKETF-----FINNDKQKMNATQFSIWFKAKATKAGVNKSAHG--VRKFS 293 LL E F FI N +++M+ F K A + G+ K+ H R Sbjct: 231 TANLLKDLIKENEEFETDHVFITNYEEQMDRNHFRKRLKGYAKETGITKNVHPHLFRHTG 290 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYT 323 AT+ +AG L G + YT Sbjct: 291 ATMFLEAGGDIRHLQMLLGHADLRMVMRYT 320 >gi|282859943|ref|ZP_06269031.1| tyrosine recombinase XerD [Prevotella bivia JCVIHMP010] gi|282587346|gb|EFB92563.1| tyrosine recombinase XerD [Prevotella bivia JCVIHMP010] Length = 310 Score = 42.4 bits (98), Expect = 0.10, Method: Compositional matrix adjust. Identities = 49/209 (23%), Positives = 84/209 (40%), Gaps = 17/209 (8%) Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQFKSFWS 187 S + L+ +R +++ V Y+ +P +E PK+ + + +Q Sbjct: 75 SLARILSGVRHFYRFLVLDGYLEADPTELLESPKQPQHLPEVLSTAEVDIILQSIDLSKW 134 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT---IITV------ELP 238 EG + + E L GLR S+ + +L + I+ G+ ++ + EL Sbjct: 135 EGQRNKAIIEMLFSCGLRVSELTNLKLSNLYLDDLYIRVMGKGSKERLVPISPRAVEELN 194 Query: 239 DGFMKLLAMT-PIGKETF-FINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSA 294 F+ M G+E + F+N + T I K A AG+ K S H +R A Sbjct: 195 YWFLDRNQMVIKEGEEDYVFLNRRGAHLTRTMILIMLKRYAKGAGIKKTISPHTLRHSFA 254 Query: 295 TISADAGATAHELMATYGWKTVDQAETYT 323 T + GA + A G ++V E YT Sbjct: 255 TALLEGGADLRSIQAMLGHESVVTTEIYT 283 >gi|126461068|ref|YP_001042182.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17029] gi|126102732|gb|ABN75410.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17029] Length = 354 Score = 42.4 bits (98), Expect = 0.10, Method: Compositional matrix adjust. Identities = 42/142 (29%), Positives = 55/142 (38%), Gaps = 16/142 (11%) Query: 198 FLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDGFMKLLAM-------- 247 FLL +G R ++ VQHL + + K G V P ++LA Sbjct: 175 FLLGTGCRTGEALGLAVQHLHIETRQAHVGITKNGDGKMVSFPTRTKRILAACGLPEAGA 234 Query: 248 ---TPIGKETFFINNDKQKMNATQFSIWFKAK--ATKAGVNKSAHGVRKFSATISADAGA 302 TP G+ +N D QK+ Q F A A K G + + H +R AT Sbjct: 235 VFRTPKGRPYRLVNGDGQKLGG-QIKGAFDAARTAAKLGEDVTPHTLRHTFATWHYAVNK 293 Query: 303 TAHELMATYGWKTVDQAETYTK 324 LM GWK D A YTK Sbjct: 294 DLILLMERGGWKRADLAIGYTK 315 >gi|296162521|ref|ZP_06845311.1| integrase family protein [Burkholderia sp. Ch1-1] gi|295887229|gb|EFG67057.1| integrase family protein [Burkholderia sp. Ch1-1] Length = 565 Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust. Identities = 37/138 (26%), Positives = 61/138 (44%), Gaps = 18/138 (13%) Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG---IRPWTKEDMQQF 182 R+ PSS L+ + +F+W V Q+YV NP V ++ G IR ++ + Sbjct: 302 RRLRPSSVAYALSVLSAMFRWLVEQQYVVANPFAGVTAGNARSAGHVRIRSLADDEWRFA 361 Query: 183 KSF---------WSEGSQPRLAF--EFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQ 227 + WS + RL F +F L +GLR ++ +A + H+ +I+ T Sbjct: 362 RHVASELSTVHGWSVEAAQRLCFILDFELATGLRATELVQARLGHIYFGDAADIWLRLTG 421 Query: 228 KTGTIITVELPDGFMKLL 245 K I V +P M+ L Sbjct: 422 KGRRIARVAMPPLAMQAL 439 >gi|227827993|ref|YP_002829773.1| integrase family protein [Sulfolobus islandicus M.14.25] gi|229585262|ref|YP_002843764.1| integrase family protein [Sulfolobus islandicus M.16.27] gi|238620221|ref|YP_002915047.1| integrase family protein [Sulfolobus islandicus M.16.4] gi|227459789|gb|ACP38475.1| integrase family protein [Sulfolobus islandicus M.14.25] gi|228020312|gb|ACP55719.1| integrase family protein [Sulfolobus islandicus M.16.27] gi|238381291|gb|ACR42379.1| integrase family protein [Sulfolobus islandicus M.16.4] Length = 291 Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust. Identities = 45/205 (21%), Positives = 87/205 (42%), Gaps = 18/205 (8%) Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 VE R+ + ++ ++R KW V++ P + PK + + ++ + +Q+ Sbjct: 77 VEKRRAKSVTIRYYIIAVRRFLKWL----NVSVKPPI----PKVRRKEVKALDESQIQKV 128 Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH--LQNNIFSIKTQKTGTIITVELPDG 240 + + ++ +L LL +GLR ++ V+ L+NN+ ++ K G V D Sbjct: 129 LN-TCKRTKDKLIIRLLLDTGLRANELLSVLVKDVDLENNMIRVRNTKNGEERVVFFTDE 187 Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAK--ATKAGVNKSAHGVRKFSATISA 298 +LL GK+ D++ + T +++ K K K + H +R AT+S Sbjct: 188 TKQLLRKYMKGKKL-----DEKLFDITYDALYRKLKRLGNKVEIELRPHILRHTFATLSL 242 Query: 299 DAGATAHELMATYGWKTVDQAETYT 323 G L G K + + YT Sbjct: 243 KRGINVITLQKLLGHKDIKTTQIYT 267 >gi|227830730|ref|YP_002832510.1| integrase [Sulfolobus islandicus L.S.2.15] gi|229581710|ref|YP_002840109.1| integrase family protein [Sulfolobus islandicus Y.N.15.51] gi|284998243|ref|YP_003420011.1| phage integrase family protein [Sulfolobus islandicus L.D.8.5] gi|227457178|gb|ACP35865.1| integrase family protein [Sulfolobus islandicus L.S.2.15] gi|228012426|gb|ACP48187.1| integrase family protein [Sulfolobus islandicus Y.N.15.51] gi|284446139|gb|ADB87641.1| phage integrase family protein [Sulfolobus islandicus L.D.8.5] Length = 291 Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust. Identities = 45/205 (21%), Positives = 87/205 (42%), Gaps = 18/205 (8%) Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 VE R+ + ++ ++R KW V++ P + PK + + ++ + +Q+ Sbjct: 77 VEKRRAKSVTIRYYIIAVRRFLKWL----NVSVKPPI----PKVRRKEVKALDESQIQKV 128 Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH--LQNNIFSIKTQKTGTIITVELPDG 240 + + ++ +L LL +GLR ++ V+ L+NN+ ++ K G V D Sbjct: 129 LN-TCKRTKDKLIIRLLLDTGLRANELLSVLVKDVDLENNMIRVRNTKNGEERVVFFTDE 187 Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAK--ATKAGVNKSAHGVRKFSATISA 298 +LL GK+ D++ + T +++ K K K + H +R AT+S Sbjct: 188 TKQLLRKYMKGKKL-----DEKLFDITYDALYRKLKRLGNKVEIELRPHILRHTFATLSL 242 Query: 299 DAGATAHELMATYGWKTVDQAETYT 323 G L G K + + YT Sbjct: 243 KRGINVITLQKLLGHKDIKTTQIYT 267 >gi|289650500|ref|ZP_06481843.1| phage integrase family site specific recombinase [Pseudomonas syringae pv. aesculi str. 2250] Length = 279 Score = 42.4 bits (98), Expect = 0.12, Method: Compositional matrix adjust. Identities = 45/207 (21%), Positives = 85/207 (41%), Gaps = 27/207 (13%) Query: 99 FDQIIRKSGDFDYRKITTKHI---RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAI 155 F I + D+R++T H+ R+ +E R ++ + L ++ LF + +A Sbjct: 53 FSAFIGLASADDFRQVTRSHVLAWRANLEQRGLAGATIRRKLAALASLFDHLLESNAIAG 112 Query: 156 -NPCLSVERPK-RKTEGIRPWTKEDMQQFKSFWS-------EGSQPRLAFEFLLYSGLRC 206 NP V+RPK EG P + Q K+ +G + R LLY GLR Sbjct: 113 GNPVHGVKRPKIESNEGKTPALGD--HQAKALLEAPDESTLKGLRDRAMLAVLLYHGLRR 170 Query: 207 SDSCRAGVQHLQN--NIFSIKTQKTGTIITVELPDGFMKLLAMTPI--GKETFFINNDKQ 262 ++ + V +Q I +K G G ++ L + P+ G+ +++ Sbjct: 171 EEAAQLQVSDIQERRGIQHLKIHGKG---------GKVRYLPLHPVAAGRIHWYLERSGH 221 Query: 263 KMNATQFSIWFKAKATKAGVNKSAHGV 289 + + ++ + G + SA+G+ Sbjct: 222 HLGDKKVPLFISLRGKSTGASISANGI 248 >gi|323343537|ref|ZP_08083764.1| integrase/recombinase XerD [Prevotella oralis ATCC 33269] gi|323095356|gb|EFZ37930.1| integrase/recombinase XerD [Prevotella oralis ATCC 33269] Length = 317 Score = 42.4 bits (98), Expect = 0.12, Method: Compositional matrix adjust. Identities = 50/223 (22%), Positives = 88/223 (39%), Gaps = 19/223 (8%) Query: 120 RSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK--RKTEGIRPWT 175 R V+ +H P++ + L+ +R +++ V Y+A +P +E P + Sbjct: 63 RFAVQIHEHGVGPATQARILSGVRSFYRFLVLDGYIAADPTELLESPHIGEHLPEVLSAA 122 Query: 176 KEDMQQFKSFWS--EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-- 231 + DM + S EG + + E L GLR S+ + L ++ G Sbjct: 123 EVDMLEDSIDLSKWEGQRNKAIIEMLFSCGLRVSELVNLKLSDLYIEEEYVRVLGKGDKE 182 Query: 232 -IITV------ELPDGFM--KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282 ++ + EL F+ L+ + P + F+N + T I K +A AG+ Sbjct: 183 RLVPISPKAIKELKLWFIDRNLMQIKPGEIDFVFLNRRGSHLTRTMILIMIKRQAEAAGI 242 Query: 283 NK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 K S H +R AT GA + G +++ E YT Sbjct: 243 RKTISPHTLRHSFATELLKGGADLRAIQEMLGHESIGTTEIYT 285 >gi|295110676|emb|CBL24629.1| Site-specific recombinase XerD [Ruminococcus obeum A2-162] Length = 400 Score = 42.4 bits (98), Expect = 0.12, Method: Compositional matrix adjust. Identities = 30/97 (30%), Positives = 48/97 (49%), Gaps = 8/97 (8%) Query: 97 SYFDQIIRKS-GDFDYRKITTKHIRSGVESR-----KHTPSSAIQFLTSMRVLFKWAVRQ 150 SY++ ++ S G + I T H++ + H S I+F+ S + AV Sbjct: 94 SYYNSRVKNSIGKMYLQDIKTYHVQKFLNDLIDSGLAHGTVSNIRFMLSD--MLDKAVLS 151 Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 EY+ NPC+ VE PK + R TKE+ ++F +F S Sbjct: 152 EYIRKNPCIGVEMPKEVKKERRVLTKEEQEKFFTFAS 188 >gi|192362212|ref|YP_001983742.1| tyrosine recombinase XerC [Cellvibrio japonicus Ueda107] gi|190688377|gb|ACE86055.1| tyrosine recombinase XerC [Cellvibrio japonicus Ueda107] Length = 313 Score = 42.4 bits (98), Expect = 0.12, Method: Compositional matrix adjust. Identities = 38/204 (18%), Positives = 85/204 (41%), Gaps = 15/204 (7%) Query: 99 FDQIIRKSGDFDYRKITTKHIRSGVES--RKHTPSSAIQ-FLTSMRVLFKWAVRQEYVAI 155 F + R +G ++ + +R V S R+ ++Q +L+S+R F++A+R +++I Sbjct: 40 FQRYCRDAGIQQLTEVDARAVRMAVASLHRQGLAGKSLQRWLSSLRGFFQYAIRHHWMSI 99 Query: 156 NPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG---SQPRLAFEFLLYSGLRCSD--SC 210 NP + PK + + + QF + + + R E + SGLR ++ S Sbjct: 100 NPADGIAAPKTPKKLPKTLDVDQTAQFVAVEGDDFIHKRDRALLELIYSSGLRLAEVTSL 159 Query: 211 RAGVQHLQNNIFSI-------KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQK 263 G + + ++ +T G++ L D + P + FI ++ Sbjct: 160 NLGDIDWGDAMVTVTGKGSKTRTLPVGSVAIAALKDWLSQREQYAPASEPALFITQRGKR 219 Query: 264 MNATQFSIWFKAKATKAGVNKSAH 287 ++ + + + + G++ H Sbjct: 220 ISHRAVQLRLQQLSVQQGMDNPVH 243 >gi|114707207|ref|ZP_01440105.1| hypothetical protein FP2506_04851 [Fulvimarina pelagi HTCC2506] gi|114537403|gb|EAU40529.1| hypothetical protein FP2506_04851 [Fulvimarina pelagi HTCC2506] Length = 96 Score = 42.0 bits (97), Expect = 0.12, Method: Composition-based stats. Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 1/57 (1%) Query: 273 FKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 F+ +AG+N SA +RK A I+A GA +L A +GW+ ++A YT+ A + Sbjct: 17 FRKSCNEAGLNHCSARRLRKAGAAIAAKNGANEEDLKALFGWENANEANLYTRKASQ 73 >gi|84687247|ref|ZP_01015127.1| Possible integrase/recombinase [Maritimibacter alkaliphilus HTCC2654] gi|84664680|gb|EAQ11164.1| Possible integrase/recombinase [Rhodobacterales bacterium HTCC2654] Length = 145 Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 32/56 (57%) Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRR 338 N+S H VR+ A + A+ GA+ +E+M T G A YT ADR +G+ SR+ Sbjct: 88 NRSQHVVRRGVAQLLANEGASEYEIMTTLGHSDPRTARIYTDKADRAGMGVSASRK 143 >gi|289628758|ref|ZP_06461712.1| phage integrase family site specific recombinase [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|330870488|gb|EGH05197.1| phage integrase family site specific recombinase [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 320 Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust. Identities = 45/207 (21%), Positives = 85/207 (41%), Gaps = 27/207 (13%) Query: 99 FDQIIRKSGDFDYRKITTKHI---RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAI 155 F I + D+R++T H+ R+ +E R ++ + L ++ LF + +A Sbjct: 52 FSAFIGLASADDFRQVTRSHVLAWRANLEQRGLAGATIRRKLAALASLFDHLLESNAIAG 111 Query: 156 -NPCLSVERPK-RKTEGIRPWTKEDMQQFKSFWS-------EGSQPRLAFEFLLYSGLRC 206 NP V+RPK EG P + Q K+ +G + R LLY GLR Sbjct: 112 GNPVHGVKRPKIESNEGKTPALGD--HQAKALLEAPDESTLKGLRDRAMLAVLLYHGLRR 169 Query: 207 SDSCRAGVQHLQN--NIFSIKTQKTGTIITVELPDGFMKLLAMTPI--GKETFFINNDKQ 262 ++ + V +Q I +K G G ++ L + P+ G+ +++ Sbjct: 170 EEAAQLQVSDIQERRGIQHLKIHGKG---------GKVRYLPLHPVAAGRIHWYLERSGH 220 Query: 263 KMNATQFSIWFKAKATKAGVNKSAHGV 289 + + ++ + G + SA+G+ Sbjct: 221 HLGDKKVPLFISLRGKSTGASISANGI 247 >gi|260910520|ref|ZP_05917188.1| integrase/recombinase XerD [Prevotella sp. oral taxon 472 str. F0295] gi|260635362|gb|EEX53384.1| integrase/recombinase XerD [Prevotella sp. oral taxon 472 str. F0295] Length = 304 Score = 42.0 bits (97), Expect = 0.12, Method: Compositional matrix adjust. Identities = 49/221 (22%), Positives = 88/221 (39%), Gaps = 19/221 (8%) Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 + + ++ TP S + L+ +R FK+ + ++ +P + P + + ++ Sbjct: 64 ASLHDQRITPRSQARILSGVRSFFKFLLLDGFIDADPTELLVSPHVRNALPDVLSTAEVD 123 Query: 181 QFK-----SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT---I 232 + + S W EG + R E L GLR S+ + +L ++ G + Sbjct: 124 RLEASIDLSKW-EGQRNRAIIEVLFSCGLRVSELVNLKLSNLYVEEKFVRVTGKGDKERL 182 Query: 233 ITV------ELPDGFMKLLAM--TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284 + + EL F AM P ++ F+N + T I K +A AG+ K Sbjct: 183 VPISSRALDELNAWFADRNAMRIKPGEEDYVFLNRRGAHLTRTMILIMIKRQAVAAGITK 242 Query: 285 --SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 S H +R AT + GA + A G + + E YT Sbjct: 243 TISPHTLRHSFATALLEGGADLIAIQAMMGHEDIATTEIYT 283 >gi|225572145|ref|ZP_03781009.1| hypothetical protein RUMHYD_00439 [Blautia hydrogenotrophica DSM 10507] gi|225040317|gb|EEG50563.1| hypothetical protein RUMHYD_00439 [Blautia hydrogenotrophica DSM 10507] Length = 351 Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust. Identities = 42/202 (20%), Positives = 85/202 (42%), Gaps = 41/202 (20%) Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ---------------Q 181 ++S+R + + ++E + NP L V+ PK + I +++ Q Sbjct: 116 MSSLRSFYAYYYKREMIETNPTLLVDMPKLHQKAITRLDADEVALLLDYIEHAGDELTGQ 175 Query: 182 FKSFWSEGSQPRLAF-EFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITV--- 235 K ++ + + LA LL +G+R S+ V+ L +NN + + G +I Sbjct: 176 KKVYYEKTKERDLALVTLLLGTGIRVSECVGLDVEDLDFKNNGIKVTRKGGGEMIVYFGS 235 Query: 236 ELPDGFMKLLA----MTPI-GKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVR 290 E+ + L +TP+ G E ++++ + + GV + V+ Sbjct: 236 EVETALRRYLKARDNITPVVGHE---------------HALFYSTQRKRLGVQAVENLVK 280 Query: 291 KFSATISADAGATAHELMATYG 312 K+++ I+ T H+L +TYG Sbjct: 281 KYASQITTTKKITPHKLRSTYG 302 >gi|331087780|ref|ZP_08336706.1| hypothetical protein HMPREF1025_00289 [Lachnospiraceae bacterium 3_1_46FAA] gi|330409761|gb|EGG89197.1| hypothetical protein HMPREF1025_00289 [Lachnospiraceae bacterium 3_1_46FAA] Length = 400 Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust. Identities = 30/97 (30%), Positives = 48/97 (49%), Gaps = 8/97 (8%) Query: 97 SYFDQIIRKS-GDFDYRKITTKHIRSGVESR-----KHTPSSAIQFLTSMRVLFKWAVRQ 150 SY++ ++ S G + I T H++ + H S I+F+ S + AV Sbjct: 94 SYYNSRVKNSIGKMYLQDIKTYHVQKFLNDLIDSGLAHGTVSNIRFMLSD--MLDKAVLS 151 Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 EY+ NPC+ VE PK + R TKE+ ++F +F S Sbjct: 152 EYIRKNPCIGVEMPKEVKKERRVLTKEEQEKFFTFAS 188 >gi|260893196|ref|YP_003239293.1| integrase family protein [Ammonifex degensii KC4] gi|260865337|gb|ACX52443.1| integrase family protein [Ammonifex degensii KC4] Length = 391 Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust. Identities = 33/140 (23%), Positives = 68/140 (48%), Gaps = 12/140 (8%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE--SRKHTPSS 132 + +R+S +LA N R + ++ I G + ++T + + + ++ PS+ Sbjct: 74 VEAHRRSWRPNTLA-NKRTAARAWGRLI----GHLEVERLTPADVELALARLAEEYAPST 128 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192 A + +S R +WA +++ + +P V P+ +T+ I PWT E+ +F + E ++ Sbjct: 129 AKEVFSSFRQALRWARKRKLLHHDPTEGVPAPRGETQEITPWTGEEAARFLEY-LEKARM 187 Query: 193 RLA----FEFLLYSGLRCSD 208 R A F L +G+R + Sbjct: 188 RKAYKAFFRLALATGMRLGE 207 >gi|229075069|ref|ZP_04208071.1| DNA integration/recombination/invertion protein [Bacillus cereus Rock4-18] gi|228708126|gb|EEL60297.1| DNA integration/recombination/invertion protein [Bacillus cereus Rock4-18] Length = 369 Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust. Identities = 26/120 (21%), Positives = 58/120 (48%), Gaps = 5/120 (4%) Query: 93 ISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVL---FKWAV 148 + + ++ +Q +I G K+ HI+ ++ + L + R+L AV Sbjct: 86 VGYRAFINQHVIPSIGMVALHKLNVMHIQKCYKTAMDKGIANNSILLTHRILKSALNLAV 145 Query: 149 RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSD 208 +Q ++ NP E PK++ I+ WT+E++++F S+ S+ + + + +G+R + Sbjct: 146 KQNIISQNPAAFAEIPKKERTSIQTWTEEEVKKF-LLHSQESRYHIGYLLAITTGMRMGE 204 >gi|168778124|ref|ZP_02803131.1| site-specific recombinase, phage integrase family [Escherichia coli O157:H7 str. EC4196] gi|187766816|gb|EDU30660.1| site-specific recombinase, phage integrase family [Escherichia coli O157:H7 str. EC4196] Length = 359 Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust. Identities = 44/197 (22%), Positives = 79/197 (40%), Gaps = 6/197 (3%) Query: 36 PYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISF 95 P ES + A L K E + R + T L ++ SA++ L+ ++ + Sbjct: 27 PTSRESVTLTAIEDGLAALWKKYEETVNHRDRAMTFGRLWEKFLASAYYSELSPRTQKDY 86 Query: 96 ESYFDQIIRKSGDFDYRKITTKHIRSGVESR-KHTPSSAIQFLTSMRVLFKWAVRQEYVA 154 + +++ G + +HIR ++ R + + + A +SM ++ W + YV Sbjct: 87 LQHQKKLLAVFGKVLADSVKPEHIRRYMDKRGEQSKTQANHEKSSMSRVYSWGYERGYVK 146 Query: 155 INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR-LAFEFLLYSGLRCSDSCRAG 213 NPC V + K K KE +++ S P +A E R SD Sbjct: 147 ANPCAGVSKFKAKNRERYVTDKE----YQAVLSVAPLPVFIAMEIAYLCAARVSDVLSLK 202 Query: 214 VQHLQNNIFSIKTQKTG 230 + + N+ I+ KTG Sbjct: 203 WEQIGNDGIFIQQGKTG 219 >gi|324114504|gb|EGC08473.1| bacteriophage lambda integrase domain-containing protein [Escherichia fergusonii B253] Length = 357 Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust. Identities = 47/220 (21%), Positives = 88/220 (40%), Gaps = 16/220 (7%) Query: 93 ISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQ 150 + + S I RK D I+TK + + + + + +SA +++ +F+ A+ + Sbjct: 98 LDYASKIRAIRRKLPDKPLADISTKEVAAMLNTYVAEGKAASAKLIRSTLVDVFREAIAE 157 Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSC 210 +VA NP + K + R E ++ + + RLA + + +G R D C Sbjct: 158 GHVATNPVTATRTAKSEVRRSRLTANEYVEIYHAAEPLPIWLRLAMDLAVVTGQRVGDLC 217 Query: 211 RAGVQHLQNNIFSIKTQKTGTIITVELP---DGFMKLLAMT------PIGKETFFINNDK 261 R + +N I+ KTG + + L D LA T G ET + Sbjct: 218 RMKWSDINDNHLHIEQGKTGAKLAIPLTLRIDALNISLADTLQKCRKASGSETIIASTHH 277 Query: 262 QKMNATQFSIWFKAKATKAGVNKSA-----HGVRKFSATI 296 + ++ S +F +G++ H +R SA + Sbjct: 278 EPLSPKTVSKYFTKARNASGLSFDGDPPTFHELRSLSARL 317 >gi|195562187|gb|ACG50169.1| putative integrase [Escherichia coli] Length = 329 Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust. Identities = 38/176 (21%), Positives = 80/176 (45%), Gaps = 8/176 (4%) Query: 59 EYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH 118 E + RK T L ++ S + LA ++ + ++ ++ G+ + + I +H Sbjct: 49 EKVIEGRKNILTFSQLWKKFLNSTDYADLAPRTQKDYLAHEKYLLAVFGEAEAKSIKPEH 108 Query: 119 IRSGVESR-KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER-PKRKTEGIRPWTK 176 +R +++R K + A +SM +++W ++ +V NPC+ V++ PK + + R T Sbjct: 109 VRRYMDARGKKSRVQANHEHSSMSRVYRWGYQRGFVPGNPCVGVDKYPKPQRD--RYITD 166 Query: 177 EDMQQFKSFWSEGSQP-RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231 E ++ + + + P + A E R SD + + + I+ KTG Sbjct: 167 E---EYLAIYDCATDPVKAAMEIAYLCAARVSDVLKMDWNQIMDKGIFIQQGKTGV 219 >gi|153815865|ref|ZP_01968533.1| hypothetical protein RUMTOR_02110 [Ruminococcus torques ATCC 27756] gi|145846890|gb|EDK23808.1| hypothetical protein RUMTOR_02110 [Ruminococcus torques ATCC 27756] Length = 400 Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust. Identities = 32/118 (27%), Positives = 58/118 (49%), Gaps = 9/118 (7%) Query: 97 SYFDQIIRKS-GDFDYRKITTKHIRSGVESR-----KHTPSSAIQFLTSMRVLFKWAVRQ 150 SY++ ++ S G + I T H++ + H S I+F+ S +F AV Sbjct: 94 SYYNARVKNSIGKMYLQDIKTYHVQKFINELIDSGLAHGTVSNIRFMLSD--MFDKAVLS 151 Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSD 208 EY+ NPC++VE P + + R T+E+ ++F +F S + +F + +G R + Sbjct: 152 EYIRKNPCIAVEMPPKVKKERRVLTREEQKKFFTFASSYIHINV-LKFAVTTGCRIGE 208 >gi|188496064|ref|ZP_03003334.1| integrase [Escherichia coli 53638] gi|188491263|gb|EDU66366.1| integrase [Escherichia coli 53638] Length = 357 Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust. Identities = 34/147 (23%), Positives = 64/147 (43%), Gaps = 2/147 (1%) Query: 93 ISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQ 150 + + S I RK D I+TK + + + + + +SA +++ +F+ A+ + Sbjct: 98 LDYASKIRAIRRKLPDKPLNDISTKEVAAMLNTYVAEGKAASAKLIRSTLVDVFREAIAE 157 Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSC 210 +VA NP + K + R E ++ + + RLA + + +G R D C Sbjct: 158 GHVATNPVTATRTAKSEVRRSRLTANEYIEIYHAAEPLPIWLRLAMDLAVITGQRVGDLC 217 Query: 211 RAGVQHLQNNIFSIKTQKTGTIITVEL 237 R + +N I+ KTG I + L Sbjct: 218 RMKWSDINDNHLHIEQGKTGAKIAIPL 244 >gi|229579624|ref|YP_002838023.1| integrase family protein [Sulfolobus islandicus Y.G.57.14] gi|228010339|gb|ACP46101.1| integrase family protein [Sulfolobus islandicus Y.G.57.14] Length = 291 Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust. Identities = 45/205 (21%), Positives = 87/205 (42%), Gaps = 18/205 (8%) Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 VE R+ + ++ ++R KW V++ P + PK + + ++ + +Q+ Sbjct: 77 VEKRRAKSVTIRYYIIAVRRFLKWL----NVSVKPPI----PKVRGKEVKALDESQIQKV 128 Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH--LQNNIFSIKTQKTGTIITVELPDG 240 + + ++ +L LL +GLR ++ V+ L+NN+ ++ K G V D Sbjct: 129 LN-TCKRTKDKLIIRLLLDTGLRANELLSVLVKDVDLENNMIRVRNTKNGEERVVFFTDE 187 Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAK--ATKAGVNKSAHGVRKFSATISA 298 +LL GK+ D++ + T +++ K K K + H +R AT+S Sbjct: 188 TKQLLRKYMKGKKL-----DEKLFDITYDALYRKLKRLGNKVEIELRPHILRHTFATLSL 242 Query: 299 DAGATAHELMATYGWKTVDQAETYT 323 G L G K + + YT Sbjct: 243 KRGINVITLQKLLGHKDIKTTQIYT 267 >gi|168752738|ref|ZP_02777760.1| site-specific recombinase, phage integrase family [Escherichia coli O157:H7 str. EC4113] gi|168757666|ref|ZP_02782673.1| site-specific recombinase, phage integrase family [Escherichia coli O157:H7 str. EC4401] gi|168770287|ref|ZP_02795294.1| site-specific recombinase, phage integrase family [Escherichia coli O157:H7 str. EC4486] gi|168784061|ref|ZP_02809068.1| site-specific recombinase, phage integrase family [Escherichia coli O157:H7 str. EC4076] gi|195940083|ref|ZP_03085465.1| putative integrase [Escherichia coli O157:H7 str. EC4024] gi|208810674|ref|ZP_03252550.1| site-specific recombinase, phage integrase family [Escherichia coli O157:H7 str. EC4206] gi|208816586|ref|ZP_03257706.1| site-specific recombinase, phage integrase family [Escherichia coli O157:H7 str. EC4045] gi|209399988|ref|YP_002271143.1| site-specific recombinase, phage integrase family [Escherichia coli O157:H7 str. EC4115] gi|254793679|ref|YP_003078516.1| putative integrase for prophage CP-933U [Escherichia coli O157:H7 str. TW14359] gi|188013544|gb|EDU51666.1| site-specific recombinase, phage integrase family [Escherichia coli O157:H7 str. EC4113] gi|188998687|gb|EDU67673.1| site-specific recombinase, phage integrase family [Escherichia coli O157:H7 str. EC4076] gi|189355394|gb|EDU73813.1| site-specific recombinase, phage integrase family [Escherichia coli O157:H7 str. EC4401] gi|189360802|gb|EDU79221.1| site-specific recombinase, phage integrase family [Escherichia coli O157:H7 str. EC4486] gi|208725190|gb|EDZ74897.1| site-specific recombinase, phage integrase family [Escherichia coli O157:H7 str. EC4206] gi|208730929|gb|EDZ79618.1| site-specific recombinase, phage integrase family [Escherichia coli O157:H7 str. EC4045] gi|209161388|gb|ACI38821.1| site-specific recombinase, phage integrase family [Escherichia coli O157:H7 str. EC4115] gi|254593079|gb|ACT72440.1| putative integrase for prophage CP-933U [Escherichia coli O157:H7 str. TW14359] Length = 359 Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust. Identities = 44/197 (22%), Positives = 79/197 (40%), Gaps = 6/197 (3%) Query: 36 PYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISF 95 P ES + A L K E + R + T L ++ SA++ L+ ++ + Sbjct: 27 PTSRESVTLTAIEDGLAALWKKYEETVNHRDRAMTFGRLWEKFLASAYYSELSPRTQKDY 86 Query: 96 ESYFDQIIRKSGDFDYRKITTKHIRSGVESR-KHTPSSAIQFLTSMRVLFKWAVRQEYVA 154 + +++ G + +HIR ++ R + + + A +SM ++ W + YV Sbjct: 87 LQHQKKLLAVFGKVLADSVKPEHIRRYMDKRGEQSKTQANHEKSSMSRVYSWGYERGYVK 146 Query: 155 INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR-LAFEFLLYSGLRCSDSCRAG 213 NPC V + K K KE +++ S P +A E R SD Sbjct: 147 ANPCAGVSKFKAKNRERYVTDKE----YQAVLSVAPLPVFIAMEIAYLCAARVSDVLSLK 202 Query: 214 VQHLQNNIFSIKTQKTG 230 + + N+ I+ KTG Sbjct: 203 WEQIGNDGIFIQQGKTG 219 >gi|237721804|ref|ZP_04552285.1| integrase [Bacteroides sp. 2_2_4] gi|299144803|ref|ZP_07037871.1| tyrosine recombinase XerD [Bacteroides sp. 3_1_23] gi|229448673|gb|EEO54464.1| integrase [Bacteroides sp. 2_2_4] gi|298515294|gb|EFI39175.1| tyrosine recombinase XerD [Bacteroides sp. 3_1_23] Length = 319 Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust. Identities = 59/288 (20%), Positives = 116/288 (40%), Gaps = 26/288 (9%) Query: 61 INSPRKKPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQI-----IRKSGDFDYRKI 114 IN + K + +I +Y++ SL++N+ ++ + D++ + D Sbjct: 3 INEKKHKKEQQELIIRKYQQYLKLEKSLSLNTLDAYLTDLDKLMSFLTLEGINVLDVCLS 62 Query: 115 TTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174 + +G+ P S + L+ ++ F++ + + Y+ +P +E PK + Sbjct: 63 DLQRFAAGLHDIGIHPRSQARILSGIKSFFRFLILENYLEADPSELLEGPKIGFKLPEVL 122 Query: 175 TKEDMQQFKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230 T E++ + S +EG + R E L GLR S+ + L + IK + G Sbjct: 123 TVEEIDRIISAVDRSKAEGQRNRAILETLYSCGLRVSELITLKLSDLYFDEGFIKVEGKG 182 Query: 231 T---IITVELPDGFMKLLAMTPI--------GKETFFINNDKQKMNATQFSIW--FKAKA 277 + ++ + P ++ P G E F + ++ ++ I+ K A Sbjct: 183 SKQRLVPIS-PRAINEIKLYIPDRNQIEVKKGHEDFVFVSQRRGKGLSRIMIFHMIKELA 241 Query: 278 TKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 KAG+ K S H R AT + GA + G +++ E YT Sbjct: 242 EKAGITKNISPHTFRHSFATHLLEGGANLRAIQCMLGHESIATTEIYT 289 >gi|296136669|ref|YP_003643911.1| integrase family protein [Thiomonas intermedia K12] gi|295796791|gb|ADG31581.1| integrase family protein [Thiomonas intermedia K12] Length = 336 Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust. Identities = 34/122 (27%), Positives = 59/122 (48%), Gaps = 14/122 (11%) Query: 48 MSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGS-LAVNSRISFESYFDQIIRKS 106 M+AL GS P +NSP TL+ L ++Y A LA + +++ D +++++ Sbjct: 1 MAAL-GSLP----LNSP-----TLRQLAADYLAHAQTERRLAEGTLVNYRRDLDDLLQRA 50 Query: 107 GDFDYRKITTKHIR---SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER 163 +I + HIR + + + +P + L++ R F+W R +VA NP V Sbjct: 51 ETLGAAQIESVHIRRWAAQLHAGGMSPRAIAARLSAWRSFFRWMGRLGFVAANPVQDVRA 110 Query: 164 PK 165 PK Sbjct: 111 PK 112 >gi|206599577|ref|YP_002242016.1| gp33 [Mycobacterium phage Brujita] gi|206282726|gb|ACI06247.1| gp33 [Mycobacterium phage Brujita] gi|302858513|gb|ADL71260.1| gp33 [Mycobacterium phage island3] Length = 297 Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust. Identities = 48/201 (23%), Positives = 83/201 (41%), Gaps = 13/201 (6%) Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA 195 + ++ F W +Q + NP + + RPKR RP + D+Q+ + + R Sbjct: 63 YYGALSAWFLWLQQQGHRHDNPMVMIGRPKRPKSVPRPVSNLDVQRLLAV---RAHKRTK 119 Query: 196 FEFLL--YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII-TVELPDGFMKLLAMTPIGK 252 LL + GLR + + +HL ++ G + T+ L +++ P + Sbjct: 120 AMILLAAFQGLRVHEIAQIKGEHLDLIERTMTVTGKGNVTATLPLHHRVVEIAYQMP-RR 178 Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGA---TAHELMA 309 +F D+ S K +AGV SAH +R + T +AG T ELM Sbjct: 179 GHWFPGPDRGHQRRESVSGTIKEAMIRAGVVGSAHCLRHWFGTALLEAGVDLRTVQELMR 238 Query: 310 TYGWKTVDQAETYTKGADRIR 330 +++ E YT+ D+ R Sbjct: 239 H---QSLTSTEIYTRVTDQRR 256 >gi|9625463|ref|NP_039697.1| observed 41.8Kd protein [Mycobacterium phage L5] gi|465416|sp|P22884|VINT_BPML5 RecName: Full=Integrase gi|579129|emb|CAA79409.1| gene 33 [Mycobacterium phage L5] Length = 371 Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust. Identities = 54/222 (24%), Positives = 89/222 (40%), Gaps = 27/222 (12%) Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM-----Q 180 RKH P++ +R + AV + +A NPC +E+ + T E++ + Sbjct: 130 RKH-PTARRHAYNVLRAVMNTAVEDKLIAENPC-RIEQKAADERDVEALTPEELDIVAAE 187 Query: 181 QFKSF--------WSE---GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF--SIKTQ 227 F+ + W+ G L + ++ G+ R G + N I + KT Sbjct: 188 IFEHYRIAAYILAWTSLRFGELIELRRKDIVDDGMTMKLRVRRGASRVGNKIVVGNAKTV 247 Query: 228 KTGTIITV-----ELPDGFMKLLAMTPIGKETFFINNDK-QKMNATQFSIWFKAKATKAG 281 ++ +TV E+ MK G E F + + +++ + F+ K K G Sbjct: 248 RSKRPVTVPPHVAEMIRAHMKDRTKMNKGPEAFLVTTTQGNRLSKSAFTKSLKRGYAKIG 307 Query: 282 VNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 + H +R AT +A AGAT ELMA G T A Y Sbjct: 308 RPELRIHDLRAVGATFAAQAGATTKELMARLGHTTPRMAMKY 349 >gi|126461524|ref|YP_001042638.1| putative tyrosine recombinase [Rhodobacter sphaeroides ATCC 17029] gi|126103188|gb|ABN75866.1| putative tyrosine recombinase [Rhodobacter sphaeroides ATCC 17029] Length = 101 Score = 42.0 bits (97), Expect = 0.14, Method: Composition-based stats. Identities = 23/63 (36%), Positives = 38/63 (60%), Gaps = 1/63 (1%) Query: 270 SIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 S WF A A +AG+ ++AHG+RK+ A+ GA+ + + G T+ + + YT+ ADR Sbjct: 25 SQWFSAAAREAGLEGRTAHGLRKYRMNALAEHGASVLVMQSWVGHTTLLEVQEYTRRADR 84 Query: 329 IRL 331 R+ Sbjct: 85 RRV 87 >gi|237742399|ref|ZP_04572880.1| DNA integration/recombination/invertion protein [Fusobacterium sp. 4_1_13] gi|229430047|gb|EEO40259.1| DNA integration/recombination/invertion protein [Fusobacterium sp. 4_1_13] Length = 416 Score = 42.0 bits (97), Expect = 0.15, Method: Compositional matrix adjust. Identities = 31/123 (25%), Positives = 59/123 (47%), Gaps = 10/123 (8%) Query: 91 SRISFESYF---DQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWA 147 +R S YF ++ +++ DFD K+ + R +P++ + + + ++FK+A Sbjct: 125 ARCSLIPYFYRENKKLKEIEDFD----IEKYYYHELNYRNISPNTVLHYHYLLSLVFKYA 180 Query: 148 VRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL--YSGLR 205 +R + + NP SVE+PK+K + E++ + L F L+ Y GLR Sbjct: 181 LRHKIITRNPLDSVEKPKKKKYVAEVYNAEEINILLDLLKR-EEENLYFGVLMAAYFGLR 239 Query: 206 CSD 208 S+ Sbjct: 240 RSE 242 >gi|256821403|ref|YP_003145366.1| tyrosine recombinase XerC [Kangiella koreensis DSM 16069] gi|256794942|gb|ACV25598.1| tyrosine recombinase XerC [Kangiella koreensis DSM 16069] Length = 299 Score = 42.0 bits (97), Expect = 0.15, Method: Compositional matrix adjust. Identities = 57/273 (20%), Positives = 112/273 (41%), Gaps = 25/273 (9%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-- 128 L L+ E R S H + N R E +G ++++ITT+ IR + R Sbjct: 9 LNRLLHEKRYSEHTVN---NYRRQLERLL-AFCHDAGYSNWQQITTQDIRMLIAKRHRQG 64 Query: 129 -TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 +PSS+ L++MR ++ + ++ + +NP + V PK+ + + + F Sbjct: 65 ASPSSSALQLSAMRRFLEFLLSEKKITVNPAVGVRGPKKAKRLPKNIDVDSLNHFLDQMP 124 Query: 188 EGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG--F 241 E + + E L SG+R ++ + L + S++ G + E+P G Sbjct: 125 EDEPIEVRDKAMMELLYSSGIRLAELSAMDIDDLSFSDQSLRVLGKGNKVR-EVPFGNSS 183 Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKAT---------KAGVNK--SAHGVR 290 K+L++ + F N+D++ + +Q +A K G+N H +R Sbjct: 184 KKVLSLWLKERNNFAKNSDEKALFLSQQGNRLTNRAIQQRLAHWGKKLGLNDRLHPHKLR 243 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYT 323 AT ++ + + G ++ + YT Sbjct: 244 HSCATHVLESSSDLRAVQELLGHASISTTQIYT 276 >gi|304382767|ref|ZP_07365251.1| tyrosine recombinase XerD [Prevotella marshii DSM 16973] gi|304336086|gb|EFM02332.1| tyrosine recombinase XerD [Prevotella marshii DSM 16973] Length = 315 Score = 42.0 bits (97), Expect = 0.15, Method: Compositional matrix adjust. Identities = 47/227 (20%), Positives = 88/227 (38%), Gaps = 53/227 (23%) Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS---- 187 S + L+ +R +++ Y+ +P +E P+ T + E++ + ++ Sbjct: 75 SQARVLSGVRSFYRFLQLDGYMESDPSELLESPQIGTHLPEVLSTEEVDRLENSLDLSKP 134 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA- 246 EG + R E L GLR ++ + S++ + + L +GF+++L Sbjct: 135 EGQRNRAIIEVLFSCGLRVTE------------LVSLR------LSNLYLDEGFIRVLGK 176 Query: 247 -----MTPI----------------------GKETF-FINNDKQKMNATQFSIWFKAKAT 278 PI G+E + F+N + T I K +AT Sbjct: 177 GRKERFVPISPRAIKELKLWFYDRNELKIRAGEEDYVFLNRRGVHLTRTMILIMIKRQAT 236 Query: 279 KAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 +AG+ K S H +R AT + GA + G +++ E YT Sbjct: 237 EAGIQKTISPHTLRHSFATALLEGGADLRAIQVMLGHESISTTEIYT 283 >gi|325299547|ref|YP_004259464.1| Tyrosine recombinase xerC [Bacteroides salanitronis DSM 18170] gi|324319100|gb|ADY36991.1| Tyrosine recombinase xerC [Bacteroides salanitronis DSM 18170] Length = 316 Score = 42.0 bits (97), Expect = 0.15, Method: Compositional matrix adjust. Identities = 50/211 (23%), Positives = 84/211 (39%), Gaps = 17/211 (8%) Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE- 188 P S + L+ +R F++ +Y+ +P +E P+ T E++ E Sbjct: 82 PRSQARILSGIRSFFRFLTLDDYIRQDPSELLESPQIGKHLPDVLTVEEIDALIGAIDET 141 Query: 189 ---GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT---IITV------E 236 G + R E L GLR S+ C + L + IK + G+ ++ + E Sbjct: 142 TPEGQRNRAILETLYSCGLRVSELCNLKLSDLYLDEGFIKVEGKGSKQRLVPISPRAVNE 201 Query: 237 LPDGFMKL-LAMTPIGKETF-FINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKF 292 L + F + A G E F FI+ + ++ K A + G+ K S H R Sbjct: 202 LKNYFTERGYAKIKPGYEDFVFISRFGKNISRIMVFHIIKELAERIGLKKTISPHTFRHS 261 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYT 323 AT + GA + A G +++ E YT Sbjct: 262 FATHLLEGGANLRAIQAMLGHESIGTTEIYT 292 >gi|16801135|ref|NP_471403.1| hypothetical protein lin2069 [Listeria innocua Clip11262] gi|34222947|sp|Q92A53|XERD_LISIN RecName: Full=Tyrosine recombinase xerD gi|16414570|emb|CAC97299.1| lin2069 [Listeria innocua Clip11262] gi|313618111|gb|EFR90213.1| tyrosine recombinase XerD [Listeria innocua FSL S4-378] gi|313623100|gb|EFR93374.1| tyrosine recombinase XerD [Listeria innocua FSL J1-023] Length = 297 Score = 42.0 bits (97), Expect = 0.15, Method: Compositional matrix adjust. Identities = 46/216 (21%), Positives = 89/216 (41%), Gaps = 24/216 (11%) Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 +P S +++ S+R F + + ++ +P + +E PK+ + +D+++ S S+ Sbjct: 67 SPRSVARYIASLRSFFHYLMHDGKMSHDPMIQIETPKQAQSLPKVLNLDDVEKLLS-SSD 125 Query: 189 GSQP-----RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG------------- 230 S P + E L +GLR ++ + + L + I+T G Sbjct: 126 TSTPLGLRDQAMLEILYATGLRVTELVKLKMDDLHLQMGFIQTIGKGDKERIIPLGKTAT 185 Query: 231 TIITVELPDGFMKLLAMTPIGKETF-FINNDKQKMNATQFSIWFKAKATKAGVNK--SAH 287 T++ L + KL P + F F+N+ Q + F K A ++G+ K + H Sbjct: 186 TVLEQYLEEARPKL--RRPKYRNDFVFLNHHGQGLTRQGFWKILKGIAKESGIEKPITPH 243 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 +R AT + GA + G + + YT Sbjct: 244 TLRHSFATHLLENGADLRSVQELLGHADISTTQIYT 279 >gi|317051479|ref|YP_004112595.1| integrase family protein [Desulfurispirillum indicum S5] gi|316946563|gb|ADU66039.1| integrase family protein [Desulfurispirillum indicum S5] Length = 303 Score = 42.0 bits (97), Expect = 0.15, Method: Compositional matrix adjust. Identities = 62/254 (24%), Positives = 101/254 (39%), Gaps = 45/254 (17%) Query: 103 IRKSGDFDYRKITTKHIRSGVESR-----KHTPSSAIQFLTSMRVLFKWAVRQEYVAINP 157 + + G D++++T +R+ + R KHT S+ L +++ F++ VR+E NP Sbjct: 40 LYEQGIHDWQEVTHLELRAYLYQRAGNLSKHTFSTV---LATLKSFFRFTVREEITHANP 96 Query: 158 CLSVERPKRKTEGIRPW------TKEDMQQFKSFWSEGSQPR---LAFEFLLYSGLRCSD 208 + P+R + P E +QQ S + R + F FL+ +G+R S+ Sbjct: 97 TTKLSFPRRSPQDKLPQYVNSEAQSEFLQQLLSLKRNFTNDRNRSIIFTFLM-TGMRTSE 155 Query: 209 SC-------RAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM--TP----IGKETF 255 C AG Q I T+K G + + +K+L TP I E + Sbjct: 156 LCSLKRSNVSAGTQTF------IITRKGGKQQVLPMATELVKILDTYWTPWYDAIPSEYY 209 Query: 256 FINNDKQKMNATQFSIW------FKAKATKAGVNKSAHGVRKFSATISADAGATAHELMA 309 F Q M T +IW + T + + AH +R AT A E+ Sbjct: 210 FCTKQGQPM--TPRTIWHLVSRQLQRVDTLSCTKQGAHVLRHTFATNLVRRKANLIEIQN 267 Query: 310 TYGWKTVDQAETYT 323 G V + YT Sbjct: 268 LLGHADVRMTQIYT 281 >gi|225863775|ref|YP_002749153.1| DNA integration/recombination/invertion protein [Bacillus cereus 03BB102] gi|225788569|gb|ACO28786.1| site-specific recombinase, phage integrase family [Bacillus cereus 03BB102] Length = 368 Score = 42.0 bits (97), Expect = 0.15, Method: Compositional matrix adjust. Identities = 27/111 (24%), Positives = 51/111 (45%), Gaps = 4/111 (3%) Query: 101 QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVL---FKWAVRQEYVAINP 157 II G K+ HI+ +S ++ + L R+L AV+Q + NP Sbjct: 95 HIIPNIGMISLHKLNVMHIQKCYQSALNSGIANNTILFQHRILTAALNLAVKQNIIPRNP 154 Query: 158 CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSD 208 PK++ I+ WT+E+++QF S+ S+ + + + +G+R + Sbjct: 155 ATLAVIPKKEKSSIQTWTEEEVKQF-LLHSQESRYHIGYLLAITTGMRLGE 204 >gi|215226|gb|AAA32256.1| integrase [Mycobacterium phage L5] gi|2739060|gb|AAC31622.1| L5-integrase [Cloning vector pUC-GM-INT] gi|2739066|gb|AAC31625.1| integrase [unidentified cloning vector] gi|77632626|gb|ABB00291.1| integrase [Integrative shuttle vector pCONINT] gi|302749823|gb|ADL66916.1| integrase [Cloning vector pMC1s::WT-HIV2Pr] Length = 332 Score = 42.0 bits (97), Expect = 0.15, Method: Compositional matrix adjust. Identities = 54/222 (24%), Positives = 89/222 (40%), Gaps = 27/222 (12%) Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM-----Q 180 RKH P++ +R + AV + +A NPC +E+ + T E++ + Sbjct: 91 RKH-PTARRHAYNVLRAVMNTAVEDKLIAENPC-RIEQKAADERDVEALTPEELDIVAAE 148 Query: 181 QFKSF--------WSE---GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF--SIKTQ 227 F+ + W+ G L + ++ G+ R G + N I + KT Sbjct: 149 IFEHYRIAAYILAWTSLRFGELIELRRKDIVDDGMTMKLRVRRGASRVGNKIVVGNAKTV 208 Query: 228 KTGTIITV-----ELPDGFMKLLAMTPIGKETFFINNDK-QKMNATQFSIWFKAKATKAG 281 ++ +TV E+ MK G E F + + +++ + F+ K K G Sbjct: 209 RSKRPVTVPPHVAEMIRAHMKDRTKMNKGPEAFLVTTTQGNRLSKSAFTKSLKRGYAKIG 268 Query: 282 VNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 + H +R AT +A AGAT ELMA G T A Y Sbjct: 269 RPELRIHDLRAVGATFAAQAGATTKELMARLGHTTPRMAMKY 310 >gi|218442340|ref|YP_002380665.1| hypothetical protein PCC7424_5613 [Cyanothece sp. PCC 7424] gi|218175444|gb|ACK74172.1| hypothetical protein PCC7424_5613 [Cyanothece sp. PCC 7424] Length = 273 Score = 42.0 bits (97), Expect = 0.15, Method: Compositional matrix adjust. Identities = 52/238 (21%), Positives = 96/238 (40%), Gaps = 14/238 (5%) Query: 93 ISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQ 150 IS++ + Q + G R +T + V T P + + +++ LF +A R Sbjct: 27 ISYQCHVKQFLEFVGK-PLRDVTLDDLSLWVNRLNLTYQPVTVANKILTVKSLFSFACRV 85 Query: 151 EYVAINPCLSVERPKRK-TEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDS 209 Y+ +N ++ PK K T R ++++ + + + + + GLR S+ Sbjct: 86 GYLTVNVGSFIKSPKLKDTLAERILDPSEVKRLINA-APNERDSVLLSLMYGCGLRVSEV 144 Query: 210 CRAGVQHLQNN---IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNA 266 C L+N +F + II L D MKL P E F++ ++ Sbjct: 145 CGLNWSDLKNGKATVFGKGAKTRIVIIPPNLWDRLMKL----PRDGEAVFMSRRGNRLER 200 Query: 267 TQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 T K +GV++ S+H +R A+ + +AG L + G ++ E Y Sbjct: 201 TYIHKMIKECCHLSGVSEKASSHWLRHSHASHAVEAGCNLRLLQQSLGHSKLETTEKY 258 >gi|166031854|ref|ZP_02234683.1| hypothetical protein DORFOR_01555 [Dorea formicigenerans ATCC 27755] gi|166028307|gb|EDR47064.1| hypothetical protein DORFOR_01555 [Dorea formicigenerans ATCC 27755] Length = 361 Score = 42.0 bits (97), Expect = 0.16, Method: Compositional matrix adjust. Identities = 41/205 (20%), Positives = 89/205 (43%), Gaps = 46/205 (22%) Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ---------------Q 181 ++++R + + + +Y+A NP L V+ PK + I +++ Q Sbjct: 126 MSALRSFYSYYFKHQYIATNPTLLVDMPKLHDKAIIRLDIDEVAMLLDYVESAGEHLTGQ 185 Query: 182 FKSFWSEGSQPRLA-FEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITV--- 235 +++ + LA LL +G+R S+ + + +NN ++ T+K G+ + V Sbjct: 186 ALAYYQKTKNRDLAILTLLLGTGIRVSECVGLNLTDVDFKNNGITV-TRKGGSQMVVYFG 244 Query: 236 -ELPDGFMKLL-----AMTPIG--KETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAH 287 E+ D + +TP+ +E F++ +++M GV + Sbjct: 245 DEVADALENYIEADRKVITPLSGHEEALFLSTQRKRM----------------GVQAIEN 288 Query: 288 GVRKFSATISADAGATAHELMATYG 312 V+K++ ++ + T H+L +TYG Sbjct: 289 MVKKYARQVTPNKKITPHKLRSTYG 313 >gi|288799833|ref|ZP_06405292.1| tyrosine type site-specific recombinase [Prevotella sp. oral taxon 299 str. F0039] gi|288333081|gb|EFC71560.1| tyrosine type site-specific recombinase [Prevotella sp. oral taxon 299 str. F0039] Length = 362 Score = 41.6 bits (96), Expect = 0.16, Method: Compositional matrix adjust. Identities = 60/255 (23%), Positives = 106/255 (41%), Gaps = 26/255 (10%) Query: 95 FESYFDQIIR---KSGDFDYRKITTKHIRSGVESRKHTPSSAIQF----LTSMRVL---- 143 + Y +I+R K D + KIT K + + +H S I+ +S R+L Sbjct: 100 IDKYLSKILRVYLKDKDIELSKITPKWVERFFDFLEHEFKSFIKKTPLKASSARLLGNRL 159 Query: 144 ---FKWAVRQEYVAINPCLSVERPKRKTEGIRPW-TKEDMQQFKSF-WSEGSQPRLAFEF 198 AV+ + + NPC V R + E R + T+E++++ S + G + AF F Sbjct: 160 SGALAEAVKMDIIKDNPCQKV-RAIKAQESQRTYLTQEELKRLASTPYERGERVTKAFLF 218 Query: 199 LLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFF 256 +GLR SD + + + + +KT + ++L +G K+L F Sbjct: 219 SCLTGLRFSDVSKLRWAEVSEDFKRITFVQKKTSGLEYLDLSEGATKILKERKNNGGLVF 278 Query: 257 INNDKQKMNATQ-FSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGW 313 + ++ NA + + W +AG+NK S H R AT+ + + G Sbjct: 279 YDLPRESGNAGKLLNSW----RVRAGINKKISFHTARHTFATMLLTLDVDLYTVSKLLGH 334 Query: 314 KTVDQAETYTKGADR 328 K + + Y K D+ Sbjct: 335 KDIKTTQIYAKIIDK 349 >gi|218264364|ref|ZP_03478221.1| hypothetical protein PRABACTJOHN_03917 [Parabacteroides johnsonii DSM 18315] gi|218222062|gb|EEC94712.1| hypothetical protein PRABACTJOHN_03917 [Parabacteroides johnsonii DSM 18315] Length = 302 Score = 41.6 bits (96), Expect = 0.16, Method: Compositional matrix adjust. Identities = 45/166 (27%), Positives = 81/166 (48%), Gaps = 23/166 (13%) Query: 76 SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES---RKHTPSS 132 SEY A+ L FE + + +K G F ++ +R+ + S K +P S Sbjct: 19 SEYTIGAYSKDLQ-----QFEDFVKE--KKEGIFVPEEVDADIVRNWIISLLDNKISPVS 71 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE-DMQQF-------KS 184 + L+S++ FK+ ++Q +V++NP V PK K + + + KE DM++ + Sbjct: 72 VNRKLSSLKSFFKFLMKQGFVSVNPLRFVTGPKTK-KPLPTFVKEKDMEELLDGDGFDED 130 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230 F EG + RL E L +G+R S+ G+Q + + ++ + TG Sbjct: 131 F--EGVRDRLILEMLYDTGVRRSE--LVGLQDIDIDYDAMLIKVTG 172 >gi|148651956|ref|YP_001279049.1| tyrosine recombinase XerD [Psychrobacter sp. PRwf-1] gi|148571040|gb|ABQ93099.1| tyrosine recombinase XerD [Psychrobacter sp. PRwf-1] Length = 312 Score = 41.6 bits (96), Expect = 0.16, Method: Compositional matrix adjust. Identities = 61/279 (21%), Positives = 106/279 (37%), Gaps = 32/279 (11%) Query: 75 ISEYRKSAHWGSLAVNSRISF-------ESYFDQIIRKSGDFDYRKITTKHIRSGVESRK 127 I+E+R++ L+ +R ++ E+ + + D D + T R G Sbjct: 24 ITEFRQAMLARGLSTRTRNAYVRDLKLCETTHSKALTLWSDMDVMQCLTALDRQG----- 78 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-- 185 TP + + L+S+R + W V E NPC ++ PK + ++ D++ S Sbjct: 79 KTPRTQARMLSSLRQFYLWMVGNERREDNPCERIKTPKIGRSLPKDLSENDVESLLSAPD 138 Query: 186 --WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI----FSIKTQKT-----GTIIT 234 + G + + E L GLR S+ ++ + N + K KT G + Sbjct: 139 TSTALGLRDKAMLEVLYACGLRVSELMNLSLEQVNLNAGWLQITGKGNKTRLVPLGEYAS 198 Query: 235 VELPDGFM----KLLAMTPIGK-ETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAH 287 L D +L+A G + F+ M F K A +AG+ + S H Sbjct: 199 DALDDYLTHARGELVAHLKSGNCQAVFLTTQGGYMTRQNFWYMIKKYAKQAGIQSDLSPH 258 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 +R AT + GA + G + + YT A Sbjct: 259 TLRHAFATHLLNHGADLRSVQLLLGHSDLSTTQIYTHVA 297 >gi|187250579|ref|YP_001875061.1| integrase family protein [Elusimicrobium minutum Pei191] gi|186970739|gb|ACC97724.1| Integrase family protein [Elusimicrobium minutum Pei191] Length = 295 Score = 41.6 bits (96), Expect = 0.16, Method: Compositional matrix adjust. Identities = 43/215 (20%), Positives = 91/215 (42%), Gaps = 16/215 (7%) Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF-KSFWSEG 189 ++ ++ ++ MR K+ ++ E + NP + PKR+ + T+E+ + + ++G Sbjct: 70 NTVLRKISVMRSFAKYLLKHEVIKNNPFKLLPLPKREKLLPKFLTQEETDRLIDTAANQG 129 Query: 190 SQP---RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--------TIITVELP 238 P + FE + SGLR S+ ++ + N+ ++ G T + +E Sbjct: 130 KLPARDKALFELIYSSGLRRSEVTGLSIKDIDLNLGVVRVMGKGSKERLVPITDLAIEAL 189 Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATI 296 ++ + G + F+N ++ + K KA + + +AH +R AT Sbjct: 190 KEYLSTRGVYNSG-DPLFLNRLGGRLTGDGLAYLVKNITIKANLARKVTAHSLRHSFATH 248 Query: 297 SADAGATAHELMATYGWKTVDQAETYTK-GADRIR 330 + G L G K++ + YT DR++ Sbjct: 249 MLNNGCDLRSLQEMLGHKSLSATQVYTHVSLDRLK 283 >gi|15802459|ref|NP_288485.1| putative integrase for prophage CP-933U [Escherichia coli O157:H7 EDL933] gi|15832027|ref|NP_310800.1| integrase [Escherichia coli O157:H7 str. Sakai] gi|168765371|ref|ZP_02790378.1| site-specific recombinase, phage integrase family [Escherichia coli O157:H7 str. EC4501] gi|168789398|ref|ZP_02814405.1| site-specific recombinase, phage integrase family [Escherichia coli O157:H7 str. EC869] gi|168802960|ref|ZP_02827967.1| site-specific recombinase, phage integrase family [Escherichia coli O157:H7 str. EC508] gi|217329608|ref|ZP_03445687.1| site-specific recombinase, phage integrase family [Escherichia coli O157:H7 str. TW14588] gi|261226506|ref|ZP_05940787.1| putative integrase for prophage CP-933U [Escherichia coli O157:H7 str. FRIK2000] gi|261254686|ref|ZP_05947219.1| putative integrase for prophage CP-933U [Escherichia coli O157:H7 str. FRIK966] gi|12516149|gb|AAG57039.1|AE005423_1 putative integrase for prophage CP-933U [Escherichia coli O157:H7 str. EDL933] gi|13362241|dbj|BAB36196.1| putative integrase [Escherichia coli O157:H7 str. Sakai] gi|189364882|gb|EDU83298.1| site-specific recombinase, phage integrase family [Escherichia coli O157:H7 str. EC4501] gi|189371014|gb|EDU89430.1| site-specific recombinase, phage integrase family [Escherichia coli O157:H7 str. EC869] gi|189375237|gb|EDU93653.1| site-specific recombinase, phage integrase family [Escherichia coli O157:H7 str. EC508] gi|217317376|gb|EEC25805.1| site-specific recombinase, phage integrase family [Escherichia coli O157:H7 str. TW14588] gi|320189647|gb|EFW64304.1| Putative integrase [Escherichia coli O157:H7 str. EC1212] gi|326340080|gb|EGD63885.1| Putative integrase [Escherichia coli O157:H7 str. 1044] gi|326346464|gb|EGD70200.1| Putative integrase [Escherichia coli O157:H7 str. 1125] Length = 340 Score = 41.6 bits (96), Expect = 0.16, Method: Compositional matrix adjust. Identities = 44/197 (22%), Positives = 79/197 (40%), Gaps = 6/197 (3%) Query: 36 PYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISF 95 P ES + A L K E + R + T L ++ SA++ L+ ++ + Sbjct: 27 PTSRESVTLTAIEDGLAALWKKYEETVNHRDRAMTFGRLWEKFLASAYYSELSPRTQKDY 86 Query: 96 ESYFDQIIRKSGDFDYRKITTKHIRSGVESR-KHTPSSAIQFLTSMRVLFKWAVRQEYVA 154 + +++ G + +HIR ++ R + + + A +SM ++ W + YV Sbjct: 87 LQHQKKLLAVFGKVLADSVKPEHIRRYMDKRGEQSKTQANHEKSSMSRVYSWGYERGYVK 146 Query: 155 INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR-LAFEFLLYSGLRCSDSCRAG 213 NPC V + K K KE +++ S P +A E R SD Sbjct: 147 ANPCAGVSKFKAKNRERYVTDKE----YQAVLSVAPLPVFIAMEIAYLCAARVSDVLSLK 202 Query: 214 VQHLQNNIFSIKTQKTG 230 + + N+ I+ KTG Sbjct: 203 WEQIGNDGIFIQQGKTG 219 >gi|163737550|ref|ZP_02144967.1| phage integrase [Phaeobacter gallaeciensis BS107] gi|161389076|gb|EDQ13428.1| phage integrase [Phaeobacter gallaeciensis BS107] Length = 343 Score = 41.6 bits (96), Expect = 0.17, Method: Compositional matrix adjust. Identities = 57/259 (22%), Positives = 101/259 (38%), Gaps = 15/259 (5%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133 LI Y +S + L +R + Y I + D +I T HI + A Sbjct: 63 LILSYYESDPYKKLKPRTRSDYRRYISHIREIWAEKDPARIETHHIYELHRANADHWRQA 122 Query: 134 IQFLTSMRVLFKWA-----VRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 + M VL A +++E+ NP + K++++G PW + +F++ S+ Sbjct: 123 NYLVQVMVVLMNHARLIGFIKKEHG--NPAKGIPLFKQQSDGWEPWPDDVRAEFEALASK 180 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT 248 + RL +E + +G R D + +H + F KT + + L + L Sbjct: 181 --RARLVYELCVGTGQRIGDVVKMKWEHFSDEGFDFTQGKTDKPLWIPLTNRLKTHLEGI 238 Query: 249 PIGKETFFINNDKQ----KMNATQF-SIWFKAKATKAGVNKSAHGVRKFSATISADAGAT 303 T + + ++ A + +I K K KA K+ HG+RK + AG Sbjct: 239 ARTDGTVVTDAKDRPVSYRIVAEEMRTIKRKMKHEKASYYKT-HGLRKNATIELYLAGCD 297 Query: 304 AHELMATYGWKTVDQAETY 322 + A G V+ + Y Sbjct: 298 DEMVKAVTGHSGVEMLKKY 316 >gi|300775316|ref|ZP_07085178.1| tyrosine recombinase XerD [Chryseobacterium gleum ATCC 35910] gi|300506056|gb|EFK37192.1| tyrosine recombinase XerD [Chryseobacterium gleum ATCC 35910] Length = 304 Score = 41.6 bits (96), Expect = 0.17, Method: Compositional matrix adjust. Identities = 51/220 (23%), Positives = 86/220 (39%), Gaps = 18/220 (8%) Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 + +K + S ++++S++ FK+ + EY NP +E PK + D+ + Sbjct: 62 NLSKQKFSERSQARWISSIKAFFKFLLEDEYREDNPAALLEGPKLGLYLPDTLSLPDINK 121 Query: 182 FKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT------ 231 + G + + E L GLR S+ + ++ IK G Sbjct: 122 IIAAIEVNTDLGKRNQCIIEVLYGCGLRVSELIDLKISNINFKEQYIKVHGKGNKTRFVP 181 Query: 232 --IITVELPDGFMK-LLAMTPIGK---ETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284 T +L D ++K + + I K +T F+N+ M+ + K KAGVNK Sbjct: 182 LADYTADLLDSYIKEVRSKGKINKKYEDTLFLNSRGTSMSRVIVFLIIKELTDKAGVNKK 241 Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 S H R AT GA + G ++ E YT Sbjct: 242 ISPHTFRHSFATHLLQNGADLRYIQEMLGHSSITTTEIYT 281 >gi|90422292|ref|YP_530662.1| phage integrase [Rhodopseudomonas palustris BisB18] gi|90104306|gb|ABD86343.1| phage integrase [Rhodopseudomonas palustris BisB18] Length = 304 Score = 41.6 bits (96), Expect = 0.17, Method: Compositional matrix adjust. Identities = 47/240 (19%), Positives = 101/240 (42%), Gaps = 27/240 (11%) Query: 114 ITTKHIRSGVES----RKHTPSSAIQFLTSMRVLFKWAV-RQEYVAINPCLSVERPKRKT 168 +TT+H+R +ES RK +PS+ + + +R F++ R E ++ P+RK Sbjct: 48 VTTEHLRDYLESMMVARKLSPSTVRRRIACLRAFFRFLDDRGEMPDPFTGWRLKLPRRKR 107 Query: 169 EGIRPWTKEDMQQFKSFWSEGSQPR----------LAFEFLLYSGLRCSDSCRAGVQHLQ 218 R ++E+ Q + R + ++ +G+R + C+ + Sbjct: 108 LP-RALSREEANQLLTSARAPGAARQSLPASTPLCVEIRLMISTGIRVGELCKIATGDVS 166 Query: 219 NNIFSIKTQKTGT---IITVELPDGFMKLLAMTPI------GKETFFINNDKQKMNATQF 269 ++ S++ G+ ++ V P +L +T + G F+N + + + F Sbjct: 167 SDGASLRIHGKGSRDRVVYVSNPALRNELRKLTTLRQRLSAGDGPLFVNRNGENLRPYSF 226 Query: 270 SIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 + A +AG+ + + H +R +AT+ ++G + G ++ E YT +D Sbjct: 227 RTKLRNFAGQAGLRRRVTPHMLRHTAATLLIESGVDIRIVQRLLGHSSIATTEIYTHVSD 286 >gi|326539202|gb|ADZ87417.1| phage integrase [Brucella melitensis M5-90] Length = 116 Score = 41.6 bits (96), Expect = 0.18, Method: Compositional matrix adjust. Identities = 19/53 (35%), Positives = 30/53 (56%) Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339 HG+RK I A+ GA+ ++M T+G + AE YT+ A++ RL R+ Sbjct: 57 HGLRKTLGKILAEGGASTRQIMDTFGHDDIAHAELYTREAEQARLATDGMSRV 109 >gi|301020468|ref|ZP_07184556.1| site-specific recombinase, phage integrase family [Escherichia coli MS 196-1] gi|299881824|gb|EFI90035.1| site-specific recombinase, phage integrase family [Escherichia coli MS 196-1] Length = 341 Score = 41.6 bits (96), Expect = 0.18, Method: Compositional matrix adjust. Identities = 45/197 (22%), Positives = 78/197 (39%), Gaps = 6/197 (3%) Query: 36 PYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISF 95 P ES + A L K E + R + T L ++ SA + L+ ++ + Sbjct: 28 PTSRESVTLTAIKDGLAALWKKYEETVNNRDRAMTFGRLWEKFLASACYSDLSPRTQKDY 87 Query: 96 ESYFDQIIRKSGDFDYRKITTKHIRSGVESR-KHTPSSAIQFLTSMRVLFKWAVRQEYVA 154 + +++ G I +HIR ++ R + + + A +SM ++ W + YV Sbjct: 88 LQHQKKLLAVFGKVPADSIKPEHIRRYMDKRGEQSKTQANHEKSSMSRVYSWGYERGYVK 147 Query: 155 INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR-LAFEFLLYSGLRCSDSCRAG 213 NPC V + K K KE +++ S P +A E R SD Sbjct: 148 ANPCAGVSKFKAKNRERYVTDKE----YQAVLSVAPLPVFIAMEIAYLCAARVSDVLSLK 203 Query: 214 VQHLQNNIFSIKTQKTG 230 + + N+ I+ KTG Sbjct: 204 WEQIGNDGIFIQQGKTG 220 >gi|293606638|ref|ZP_06688993.1| phage integrase family site-specific recombinase [Achromobacter piechaudii ATCC 43553] gi|292814922|gb|EFF74048.1| phage integrase family site-specific recombinase [Achromobacter piechaudii ATCC 43553] Length = 329 Score = 41.6 bits (96), Expect = 0.18, Method: Compositional matrix adjust. Identities = 33/146 (22%), Positives = 59/146 (40%), Gaps = 7/146 (4%) Query: 107 GDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166 +F +I KH+ + TP+ A + L+ ++ +F AV + V NPC+ + +R Sbjct: 90 AEFAPDQIRPKHVAALKMDMADTPNMANRVLSFLKTVFAHAVEWQLVDSNPCVGI---RR 146 Query: 167 KTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226 EG R D + + + ++ + L +G R D + + Sbjct: 147 HAEGKRQRYITDDEYAAIYAKANPRMQVIMDLLYLTGQRVGDVIAIKRADMNEEGIAFDQ 206 Query: 227 QKTGTIITV----ELPDGFMKLLAMT 248 QKTG + V EL D + A+ Sbjct: 207 QKTGAKLLVRWTPELRDAISRANALN 232 >gi|262376584|ref|ZP_06069812.1| tyrosine recombinase XerC [Acinetobacter lwoffii SH145] gi|262308294|gb|EEY89429.1| tyrosine recombinase XerC [Acinetobacter lwoffii SH145] Length = 305 Score = 41.6 bits (96), Expect = 0.18, Method: Compositional matrix adjust. Identities = 46/190 (24%), Positives = 77/190 (40%), Gaps = 31/190 (16%) Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPC--LSVERPKRKTEGI--------- 171 VE + +PSS + L+S+R KWA + +++A NP ++R R G+ Sbjct: 61 VEQHQLSPSSLQRMLSSIRQFMKWAEQAQHLAFNPADDFQLKRQSRPLPGMVDIETVNQI 120 Query: 172 --RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229 +P + ++QQ W + E L SGLR ++ ++ + N ++ Sbjct: 121 IDQPAPENEIQQ--QMWLRD---KAILELLYSSGLRLAELQNLRIKDIDFNRQLLRITGK 175 Query: 230 GTIITVELPDG------FMKLLAMTPIGKETF------FINNDKQKMNATQFSIWFKAKA 277 G + +P G M L + P+ F FI + A Q K +A Sbjct: 176 GNKTRI-VPFGSKAKASVMAWLQVYPLWNGDFVPEANVFITQKGNPLGARQIENRVKFQA 234 Query: 278 TKAGVNKSAH 287 +AGVN H Sbjct: 235 QRAGVNVDLH 244 >gi|300941166|ref|ZP_07155675.1| site-specific recombinase, phage integrase family [Escherichia coli MS 21-1] gi|294490096|gb|ADE88852.1| putative integrase for prophage CP-933U [Escherichia coli IHE3034] gi|300454112|gb|EFK17605.1| site-specific recombinase, phage integrase family [Escherichia coli MS 21-1] Length = 341 Score = 41.6 bits (96), Expect = 0.18, Method: Compositional matrix adjust. Identities = 45/197 (22%), Positives = 78/197 (39%), Gaps = 6/197 (3%) Query: 36 PYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISF 95 P ES + A L K E + R + T L ++ SA + L+ ++ + Sbjct: 28 PTSRESVTLTAIKDGLAALWKKYEETVNNRDRAMTFGRLWEKFLASACYSDLSPRTQKDY 87 Query: 96 ESYFDQIIRKSGDFDYRKITTKHIRSGVESR-KHTPSSAIQFLTSMRVLFKWAVRQEYVA 154 + +++ G I +HIR ++ R + + + A +SM ++ W + YV Sbjct: 88 LQHQKKLLAVFGKVPADSIKPEHIRRYMDKRGEQSKTQANHEKSSMSRVYSWGYERGYVK 147 Query: 155 INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR-LAFEFLLYSGLRCSDSCRAG 213 NPC V + K K KE +++ S P +A E R SD Sbjct: 148 ANPCAGVSKFKAKNRERYVTDKE----YQAVLSVAPLPVFIAMEIAYLCAARVSDVLSLK 203 Query: 214 VQHLQNNIFSIKTQKTG 230 + + N+ I+ KTG Sbjct: 204 WEQIGNDGIFIQQGKTG 220 >gi|302391937|ref|YP_003827757.1| integrase family protein [Acetohalobium arabaticum DSM 5501] gi|302204014|gb|ADL12692.1| integrase family protein [Acetohalobium arabaticum DSM 5501] Length = 310 Score = 41.6 bits (96), Expect = 0.18, Method: Compositional matrix adjust. Identities = 50/222 (22%), Positives = 94/222 (42%), Gaps = 26/222 (11%) Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR--KTEGIRPWTKEDMQQF- 182 + ++P + + L S+R F++ ++ + NP S+E K K+E I +++M+++ Sbjct: 74 KDNSPEARNRKLYSLRSFFEYLKKRNIIKNNPTDSIEASKSELKSEPIY-LNEKNMEKYL 132 Query: 183 ---KSFWSEGSQPRLAF-EFLLYSGLRCSDSCRAGVQHLQNNIFSIK------------- 225 K++ S+ LA + LYSGLR S+ + + SIK Sbjct: 133 EAIKNYNSKYCSRDLAINKLFLYSGLRISELVNLNLDDINYEDQSIKFFGKGNKERYVPL 192 Query: 226 TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS 285 Q+ T I LPD K+ ++ F++N +++++ K A KAGV + Sbjct: 193 HQEALTAIKDYLPDR-NKITPKNQDARQALFLSNQRRRISVRTIQKMVKKYAKKAGVRNA 251 Query: 286 A----HGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 + H +R A++ L G + + YT Sbjct: 252 SKITPHKLRHTFASLLYQKTKDLRVLQDLLGHSDISTTQIYT 293 >gi|300361568|ref|ZP_07057745.1| tyrosine recombinase XerD [Lactobacillus gasseri JV-V03] gi|300354187|gb|EFJ70058.1| tyrosine recombinase XerD [Lactobacillus gasseri JV-V03] Length = 302 Score = 41.6 bits (96), Expect = 0.19, Method: Compositional matrix adjust. Identities = 51/271 (18%), Positives = 111/271 (40%), Gaps = 28/271 (10%) Query: 89 VNSRISFESYFDQIIRK---SGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFK 145 ++ R E Y D + + S + DY + + + + +S + ++S+R ++ Sbjct: 30 ISYRTDLEEYLDYLQDQNETSWEVDY--LVVDAFLAAQKDKGKATTSISRMISSLRKFYQ 87 Query: 146 WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF----KSFWSEGSQPRLAFEFLLY 201 W +RQ+ + +P + ++ PK + ++E++ + + G + R E L Sbjct: 88 WLLRQDIIERDPLIKIDSPKSERRLPTALSEEEVDKLLAAPDTNTPLGIRDRAMLELLYA 147 Query: 202 SGLRCSDSCRAGVQHLQNNIFSIKTQKTGT------IITVELP--DGFMKLLAMTPIGK- 252 +G+R S+ + +++ I+ G+ I V L + + K + + K Sbjct: 148 TGMRVSELINLRTGDIHSDLKIIRVLGKGSKERLVPITEVALSWLEKYQKDVRDAQVLKS 207 Query: 253 ----ETFFINNDKQKMNATQFSIWFKAK--ATKAGVNKSA--HGVRKFSATISADAGATA 304 + F+NN ++ T+ ++W K K G+ K+ H +R AT + GA Sbjct: 208 GQFTDVIFLNNHGHQL--TRQAVWQKIKKYCQLVGITKNVTPHTLRHTFATHLLENGADL 265 Query: 305 HELMATYGWKTVDQAETYTKGADRIRLGIKN 335 + G + + YT + L + N Sbjct: 266 RVVQEILGHSDITTTQIYTNLTQKHILEVYN 296 >gi|118725028|ref|NP_720381.2| phage integrase family site specific recombinase [Shewanella oneidensis MR-1] gi|112949651|gb|AAN52981.2| site-specific recombinase, phage integrase family [Shewanella oneidensis MR-1] Length = 456 Score = 41.6 bits (96), Expect = 0.19, Method: Compositional matrix adjust. Identities = 41/198 (20%), Positives = 80/198 (40%), Gaps = 9/198 (4%) Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-----GSQ 191 L +++ +FK A+RQ + NPC+ + + KR+ R + +MQ+ E GS Sbjct: 163 LDTLQSVFKLALRQGHCLTNPCIGIRQNKRRVLN-RFLSVAEMQRLSVALDECEAVGGSI 221 Query: 192 PRLA--FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTP 249 + A LL +G R S+ ++++ N + KTG + + + + +L+ Sbjct: 222 AQCADVLRLLLLTGCRLSEITFLKGEYVRGNELHLPDSKTGAKV-LYIGQAAVDILSRYH 280 Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMA 309 T + + S+W + + + H +R A+ + G + + + Sbjct: 281 CKANTELFPMKQGASTSLVQSLWLRLRKQIGVEDVRLHDLRHTFASYAVMDGCSIPMVAS 340 Query: 310 TYGWKTVDQAETYTKGAD 327 G K V YT D Sbjct: 341 LLGHKKVTMTLRYTHVGD 358 >gi|4490352|emb|CAB38715.1| integrase-like protein [Enterobacteria phage H19J] Length = 357 Score = 41.6 bits (96), Expect = 0.19, Method: Compositional matrix adjust. Identities = 33/147 (22%), Positives = 64/147 (43%), Gaps = 2/147 (1%) Query: 93 ISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQ 150 + + S I RK D I+TK + + + + + +SA +++ +F+ A+ + Sbjct: 98 LDYASKIRAIRRKLPDKPLTDISTKEVAAMLNTNVAEGKAASAKLIRSTLVDVFREAIAE 157 Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSC 210 +VA NP + K + R E ++ + + RLA + + +G R D C Sbjct: 158 GHVATNPVTATRTAKSEVRRSRLTANEYVEIYHAAEPLPIWLRLAMDLAVVTGQRVGDLC 217 Query: 211 RAGVQHLQNNIFSIKTQKTGTIITVEL 237 R + +N I+ KTG + + L Sbjct: 218 RMKWSDINDNHLHIEQSKTGAKLAIPL 244 >gi|163737292|ref|ZP_02144710.1| Integrase [Phaeobacter gallaeciensis BS107] gi|161389896|gb|EDQ14247.1| Integrase [Phaeobacter gallaeciensis BS107] Length = 370 Score = 41.6 bits (96), Expect = 0.20, Method: Compositional matrix adjust. Identities = 65/293 (22%), Positives = 113/293 (38%), Gaps = 20/293 (6%) Query: 67 KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE-- 124 K TL LI Y ++ H+ +LA +R + D + D I T I +G+ Sbjct: 62 KAGTLGGLIQSYFETEHYQNLAEATRRDYRKCAD-FLEPIRDTPIHVIDTPLI-AGIHDK 119 Query: 125 -SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV---ERPKRKTEGIRPWTKEDMQ 180 ++K A T + +F++ + + ++ N V RP+ + RPWT E+ Sbjct: 120 AAKKIGWRRANMVRTLLSEVFRYNIPKGLISANFAKDVIPKRRPRDRAYANRPWTIEERD 179 Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240 R+A ++ +GL SD+ R + KTG + + + Sbjct: 180 TV--LGKAKPHVRVALALMMNTGLDPSDALRLRNDQVDGGTIWGVRGKTGEEVAIPVSPT 237 Query: 241 FMKLLAMTPI-GKETFFINNDKQKMNATQFS-IW--FKAKATKAGVNKSA---HGVRKFS 293 L P ET N+ + FS +W FK G+ + G+R Sbjct: 238 LQAALNRMPNHDAETVLSNSRGEAWTYNGFSTVWHRFKTALENEGLIEKGLTLKGLRHTV 297 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSD 346 AT +AG + G KT A Y++ A+ L KN ++++ + + Sbjct: 298 ATTLREAGLDERRIADLLGQKTPSMARHYSRSAN---LANKNRETMATLEEEN 347 >gi|260844576|ref|YP_003222354.1| integrase [Escherichia coli O103:H2 str. 12009] gi|257759723|dbj|BAI31220.1| integrase [Escherichia coli O103:H2 str. 12009] Length = 341 Score = 41.6 bits (96), Expect = 0.20, Method: Compositional matrix adjust. Identities = 44/197 (22%), Positives = 79/197 (40%), Gaps = 6/197 (3%) Query: 36 PYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISF 95 P ES + A L + E + R + T L ++ SA++ L+ ++ + Sbjct: 28 PTSRESVTLTAIKDGLAALWKRYEETVNNRDRAMTFGRLWEKFLASAYYSDLSPRTQKDY 87 Query: 96 ESYFDQIIRKSGDFDYRKITTKHIRSGVESR-KHTPSSAIQFLTSMRVLFKWAVRQEYVA 154 + +++ G I +HIR ++ R + + + A +SM ++ W + YV Sbjct: 88 LQHQKKLLAVFGKVPADSIKPEHIRRYMDKRGEQSKTQANHEKSSMSRVYSWGYERGYVK 147 Query: 155 INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR-LAFEFLLYSGLRCSDSCRAG 213 NPC V + K K KE +++ S P +A E R SD Sbjct: 148 GNPCAGVSKFKAKNRERYVTDKE----YQAVLSVAPLPVFIAMEIAYLCAARVSDVLSLK 203 Query: 214 VQHLQNNIFSIKTQKTG 230 + + N+ I+ KTG Sbjct: 204 WEQIGNDGIFIQQGKTG 220 >gi|300767490|ref|ZP_07077402.1| tyrosine recombinase XerD [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|300495309|gb|EFK30465.1| tyrosine recombinase XerD [Lactobacillus plantarum subsp. plantarum ATCC 14917] Length = 305 Score = 41.6 bits (96), Expect = 0.20, Method: Compositional matrix adjust. Identities = 45/214 (21%), Positives = 89/214 (41%), Gaps = 24/214 (11%) Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF----KSFW 186 ++ I ++S+R F++ + + +P L ++ PKR + + ++++ K Sbjct: 77 NTIIHSVSSLRKFFQYLAQMHAIDTDPMLKIDTPKRAQHLPQVLSPREVERLLAVPKLNT 136 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246 G + R E + +GLR S++ + L ++ I+T G + +P G + + Sbjct: 137 PLGLRDRTLLEVMYATGLRVSETINLTMDDLHLDLGLIQTIGKGDKERI-IPIGDVAIDF 195 Query: 247 MTPIGKET-------------FFINNDKQKMNATQFSIW--FKAKATKAGVNKSA--HGV 289 +T K FINN K+ ++ +W KA+ AG+ K+ H + Sbjct: 196 ITRYLKTARPKLVSAKRRNSYLFINNHGGKL--SRQGVWKNLKAEVKAAGIEKNVTPHTL 253 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYT 323 R AT + GA + G + + YT Sbjct: 254 RHSFATHILENGADLRVVQELLGHADISTTQIYT 287 >gi|326572192|gb|EGE22188.1| tyrosine recombinase XerD [Moraxella catarrhalis BC7] Length = 307 Score = 41.6 bits (96), Expect = 0.20, Method: Compositional matrix adjust. Identities = 59/273 (21%), Positives = 101/273 (36%), Gaps = 23/273 (8%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS---GVESRKHTPS 131 +SE+R + L++ +R ++ IR S D +R+ ++ K + Sbjct: 22 LSEFRAAMLARGLSIATRNAYSQDVRLCIRLS-DMPVNLWQPSDVRNHLMCLKDAKKSER 80 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS---- 187 S + L S+ F W + Y NPC S++ PK + +++++ Sbjct: 81 SIARVLASLCQFFLWQIESGYREDNPCESIKTPKLGKTLPKTLSEQEVSSLLDAPDISSV 140 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM 247 G + + E L GLR S+ ++HL + G + + +P G L A+ Sbjct: 141 RGLRDKAMLEVLYACGLRVSELTSLSLEHLNLTAGWLSVTGKGNKMRL-IPLGEYALSAL 199 Query: 248 TP---------IGK---ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFS 293 IGK + F+ M F K A AG+N S H +R Sbjct: 200 NEYLAVRGSLLIGKKDCQAVFLTEQGGYMTRHNFWHLIKKYALMAGINTAISPHTLRHAF 259 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGA 326 AT + GA + G + + YT A Sbjct: 260 ATHLVNHGADLRSVQLLLGHSDLSTTQIYTHVA 292 >gi|314939501|ref|ZP_07846733.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus faecium TX0133a04] gi|314944175|ref|ZP_07850820.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus faecium TX0133C] gi|314951902|ref|ZP_07854934.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus faecium TX0133A] gi|314994468|ref|ZP_07859747.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus faecium TX0133B] gi|314997872|ref|ZP_07862773.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus faecium TX0133a01] gi|313588097|gb|EFR66942.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus faecium TX0133a01] gi|313591123|gb|EFR69968.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus faecium TX0133B] gi|313595936|gb|EFR74781.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus faecium TX0133A] gi|313597237|gb|EFR76082.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus faecium TX0133C] gi|313641202|gb|EFS05782.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus faecium TX0133a04] Length = 381 Score = 41.2 bits (95), Expect = 0.21, Method: Compositional matrix adjust. Identities = 32/130 (24%), Positives = 64/130 (49%), Gaps = 11/130 (8%) Query: 91 SRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVR 149 +++ E F++ I+ K G F ++ITTKH++ + T ++ +FK+A+ Sbjct: 88 TQLKIEIKFNKWILPKYGQFRIKEITTKHVQKILNQWAKTTDQYKVLHSTASRIFKYAMT 147 Query: 150 QEYVAINPCLSVERPKRKTE----GIRPWTKEDMQQ-FKSFWSEGSQPRLAFE-----FL 199 + NPC V P R E ++ ++++ ++ F+ S+ S R ++ FL Sbjct: 148 LGIITKNPCELVIMPNRNVEKKKDTVKIYSRDQLESLFQYLESKRSTYRADYDKTLLRFL 207 Query: 200 LYSGLRCSDS 209 +SG R S++ Sbjct: 208 FFSGCRISEA 217 >gi|197301719|ref|ZP_03166789.1| hypothetical protein RUMLAC_00445 [Ruminococcus lactaris ATCC 29176] gi|197299159|gb|EDY33689.1| hypothetical protein RUMLAC_00445 [Ruminococcus lactaris ATCC 29176] Length = 375 Score = 41.2 bits (95), Expect = 0.21, Method: Compositional matrix adjust. Identities = 38/196 (19%), Positives = 85/196 (43%), Gaps = 28/196 (14%) Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ----P 192 ++++R + + +++ ++ NP L V+ PK + I +++ + G + Sbjct: 139 MSALRSFYGYYFKRQIISKNPTLLVDMPKLHEKAIIRLDTDEIAMLLDYVEHGGENLTGQ 198 Query: 193 RLAF------------EFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELP 238 RLA+ LL +G+R S+ VQ + +NN + T+K G + V Sbjct: 199 RLAYYEKTKNRDLAILTLLLGTGIRVSECVGLDVQDVDFKNNGIKV-TRKGGNEMVVYFG 257 Query: 239 DGFMKLLAMTPIGKETFFINNDKQK--MNATQFSIWFKAKATKAGVNKSAHGVRKFSATI 296 + L +T+ K ++ + +++ + + GV + V+K++ + Sbjct: 258 EEVEHAL-------KTYLYTTRKSTVPLSGHENALFLSTQRKRMGVQAVENMVKKYAREV 310 Query: 297 SADAGATAHELMATYG 312 + + T H+L +TYG Sbjct: 311 TPNKKITPHKLRSTYG 326 >gi|28378545|ref|NP_785437.1| integrase/recombinase [Lactobacillus plantarum WCFS1] gi|254556759|ref|YP_003063176.1| integrase/recombinase [Lactobacillus plantarum JDM1] gi|308180702|ref|YP_003924830.1| integrase/recombinase [Lactobacillus plantarum subsp. plantarum ST-III] gi|28271381|emb|CAD64286.1| integrase/recombinase [Lactobacillus plantarum WCFS1] gi|254045686|gb|ACT62479.1| integrase/recombinase [Lactobacillus plantarum JDM1] gi|308046193|gb|ADN98736.1| integrase/recombinase [Lactobacillus plantarum subsp. plantarum ST-III] Length = 296 Score = 41.2 bits (95), Expect = 0.21, Method: Compositional matrix adjust. Identities = 45/214 (21%), Positives = 89/214 (41%), Gaps = 24/214 (11%) Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF----KSFW 186 ++ I ++S+R F++ + + +P L ++ PKR + + ++++ K Sbjct: 68 NTIIHSVSSLRKFFQYLAQMHAIDTDPMLKIDTPKRAQHLPQVLSPREVERLLAVPKLNT 127 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246 G + R E + +GLR S++ + L ++ I+T G + +P G + + Sbjct: 128 PLGLRDRTLLEVMYATGLRVSETINLTMDDLHLDLGLIQTIGKGDKERI-IPIGDVAIDF 186 Query: 247 MTPIGKET-------------FFINNDKQKMNATQFSIW--FKAKATKAGVNKSA--HGV 289 +T K FINN K+ ++ +W KA+ AG+ K+ H + Sbjct: 187 ITRYLKTARPKLVSAKRRNSYLFINNHGGKL--SRQGVWKNLKAEVKAAGIEKNVTPHTL 244 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYT 323 R AT + GA + G + + YT Sbjct: 245 RHSFATHILENGADLRVVQELLGHADISTTQIYT 278 >gi|299142969|ref|ZP_07036095.1| integrase [Prevotella oris C735] gi|298575585|gb|EFI47465.1| integrase [Prevotella oris C735] Length = 428 Score = 41.2 bits (95), Expect = 0.22, Method: Compositional matrix adjust. Identities = 52/233 (22%), Positives = 93/233 (39%), Gaps = 29/233 (12%) Query: 90 NSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVR 149 N ISFE + ++ G DY + ++ R T S + FL + +W+++ Sbjct: 163 NPNISFEDFTEE-----GLNDYLEFLGHQLKM----RNSTISKQVGFL---KWFLRWSMK 210 Query: 150 QEYVAINPCLSVERPKRKT--EGIRPWTKEDMQQFKSFWSEGSQPRL-----AFEFLLYS 202 + Y N +PK K + I T+++ +Q + + GS+ L F F ++ Sbjct: 211 KGYHQ-NAAFETYKPKLKNPDKAIIFLTRKEQEQLRDYQIPGSKQYLERVRDVFSFCCFT 269 Query: 203 GLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM---TPIGKETFFINN 259 GLR SD+ ++++ I T KT + +EL +L P + Sbjct: 270 GLRYSDAYNLRRSDIKDDHIDITTIKTTDHLKIELNKHSRSILDKYKDVPFKNDKALPVI 329 Query: 260 DKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYG 312 Q+MN + K AG++ H + + D +ELM T+ Sbjct: 330 SNQRMNE-----YLKELCELAGIDSPVH-ITYYRGQQRIDETRPKYELMGTHA 376 >gi|291283208|ref|YP_003500026.1| Site-specific recombinase, phage integrase family [Escherichia coli O55:H7 str. CB9615] gi|290763081|gb|ADD57042.1| Site-specific recombinase, phage integrase family [Escherichia coli O55:H7 str. CB9615] gi|320663362|gb|EFX30662.1| Site-specific recombinase, phage integrase family protein [Escherichia coli O55:H7 str. USDA 5905] Length = 341 Score = 41.2 bits (95), Expect = 0.22, Method: Compositional matrix adjust. Identities = 44/197 (22%), Positives = 79/197 (40%), Gaps = 6/197 (3%) Query: 36 PYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISF 95 P ES + A L K E + R + T L ++ SA++ L+ ++ + Sbjct: 28 PTSRESVTLTAIEDGLAALWKKYEETVNHRDRAMTFGRLWEKFLASAYYSELSPRTQKDY 87 Query: 96 ESYFDQIIRKSGDFDYRKITTKHIRSGVESR-KHTPSSAIQFLTSMRVLFKWAVRQEYVA 154 + +++ G + +HIR ++ R + + + A +SM ++ W + YV Sbjct: 88 LQHQKKLLAVFGKVLADSVKPEHIRRYMDKRGEQSKTQANHEKSSMSRVYSWGYERGYVK 147 Query: 155 INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR-LAFEFLLYSGLRCSDSCRAG 213 NPC V + K K KE +++ S P +A E R SD Sbjct: 148 ANPCAGVSKFKAKNRERYVTDKE----YQAVLSVAPVPVFIAMEIAYLCAARISDVLSLK 203 Query: 214 VQHLQNNIFSIKTQKTG 230 + + N+ I+ KTG Sbjct: 204 WEQIGNDGIFIQQGKTG 220 >gi|168208118|ref|ZP_02634123.1| site-specific recombinase, phage integrase family protein [Clostridium perfringens E str. JGS1987] gi|170660597|gb|EDT13280.1| site-specific recombinase, phage integrase family protein [Clostridium perfringens E str. JGS1987] Length = 312 Score = 41.2 bits (95), Expect = 0.22, Method: Compositional matrix adjust. Identities = 32/143 (22%), Positives = 66/143 (46%), Gaps = 17/143 (11%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK---HIRSGVESRKHTP 130 L+ EY ++++ ++E+ F + I GD +I TK H ++ ++ K +P Sbjct: 21 LLEEYITELQVNQCSIHTIKTYETAFKRFICDEGDLRLSEINTKVINHFKNNLKD-KVSP 79 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 + +++ +R +F +A +QEY+ +E K + + D ++ + SEG Sbjct: 80 RTINTYISHLRAVFNYAYKQEYMD-----KLEIKLIKVQQKVKYVPTD-EEIEILLSEGR 133 Query: 191 QP-------RLAFEFLLYSGLRC 206 + RLA + +G+RC Sbjct: 134 KETYSNYVCRLACMVMCTTGIRC 156 >gi|329962342|ref|ZP_08300347.1| tyrosine recombinase XerD [Bacteroides fluxus YIT 12057] gi|328530203|gb|EGF57084.1| tyrosine recombinase XerD [Bacteroides fluxus YIT 12057] Length = 317 Score = 41.2 bits (95), Expect = 0.22, Method: Compositional matrix adjust. Identities = 59/270 (21%), Positives = 108/270 (40%), Gaps = 41/270 (15%) Query: 86 SLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIR---SGVESRKHTPSSAIQFLTSM 140 SL+ N+ ++ + ++++R ++ D +T ++ +G+ P S + L+ + Sbjct: 29 SLSPNTLDAYRTDLEKLLRFLEAEKIDILAVTLDDLQRFTAGLHDIGIHPRSQARILSGI 88 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRLAF 196 + F + V +Y+ +P +E PK + T E++ + S +EG + R Sbjct: 89 KSFFHFLVLADYLEGDPSELLEGPKIGFKLPEVLTVEEIDKIISTVDLSTNEGQRNRAIL 148 Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIG----K 252 E L GLR S+ C + L + IK + G+ +L+ ++P K Sbjct: 149 ETLYSCGLRVSELCNLKISDLYFDEGFIKVEGKGSK---------QRLVPISPRAIKEIK 199 Query: 253 ETFFINNDKQKMNATQFSIWFKAK-----------------ATKAGVNK--SAHGVRKFS 293 F N+K K+ F A+ A KAG+ K S H R Sbjct: 200 NWFADRNEKWKIKKDFEDYVFLARWGNGISRIMIFHLIKELAEKAGITKNISPHTFRHSF 259 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYT 323 AT + GA + G +++ E YT Sbjct: 260 ATHLLEGGANLRAIQCMLGHESIATTEIYT 289 >gi|323187727|gb|EFZ73028.1| phage integrase family protein [Escherichia coli RN587/1] Length = 341 Score = 41.2 bits (95), Expect = 0.22, Method: Compositional matrix adjust. Identities = 45/197 (22%), Positives = 78/197 (39%), Gaps = 6/197 (3%) Query: 36 PYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISF 95 P ES + A L K E + R + T L ++ SA + L+ ++ + Sbjct: 28 PTSRESVTLTAIKDGLAALWKKYEETVNNRDRAMTFGRLWEKFLASACYSELSPRTQKDY 87 Query: 96 ESYFDQIIRKSGDFDYRKITTKHIRSGVESR-KHTPSSAIQFLTSMRVLFKWAVRQEYVA 154 + +++ G I +HIR ++ R + + + A +SM ++ W + YV Sbjct: 88 LQHQKKLLAVFGKVPADSIKPEHIRRYMDKRGEQSKTQANHEKSSMSRVYSWGYERGYVK 147 Query: 155 INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR-LAFEFLLYSGLRCSDSCRAG 213 NPC V + K K KE +++ S P +A E R SD Sbjct: 148 ANPCAGVSKFKAKNRERYVTDKE----YQAVLSVAPLPVFIAMEIAYLCAARISDVLSLK 203 Query: 214 VQHLQNNIFSIKTQKTG 230 + + N+ I+ KTG Sbjct: 204 WEQIGNDGIFIQQGKTG 220 >gi|227889862|ref|ZP_04007667.1| integrase-recombinase [Lactobacillus johnsonii ATCC 33200] gi|227849726|gb|EEJ59812.1| integrase-recombinase [Lactobacillus johnsonii ATCC 33200] Length = 296 Score = 41.2 bits (95), Expect = 0.22, Method: Compositional matrix adjust. Identities = 47/226 (20%), Positives = 97/226 (42%), Gaps = 23/226 (10%) Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF----KSFW 186 +S + ++S+R ++W +RQ+ + +P + ++ PK + ++E++ + + Sbjct: 67 TSISRMISSLRKFYQWLLRQDIIERDPLVKIDSPKSERRLPTALSEEEVTKLLDAPDTNT 126 Query: 187 SEGSQPRLAFEFLLYSGLRCSD--SCRAGVQHLQNNIFSI--KTQKTGTIITVELP---- 238 S G + R E L +G+R S+ + R G H + I + K K + E+ Sbjct: 127 SLGIRDRAMLEVLYATGMRVSELINLRTGDIHSELKIIRVLGKGSKERLVPITEVALSWL 186 Query: 239 DGFMKLLAMTPIGK-----ETFFINNDKQKMNATQFSIWFKAK--ATKAGVNKSA--HGV 289 + + K + + K + F+NN ++ T+ ++W K K G+ K+ H + Sbjct: 187 EKYQKDVRENQVLKSGQFTDVIFLNNHGHQL--TRQAVWQKIKKYCQLIGITKNVTPHTL 244 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335 R AT + GA + G + + YT + L + N Sbjct: 245 RHTFATHLLENGADLRVVQEILGHSDITTTQIYTNLTQKHILEVYN 290 >gi|224824183|ref|ZP_03697291.1| tyrosine recombinase XerC [Lutiella nitroferrum 2002] gi|224603602|gb|EEG09777.1| tyrosine recombinase XerC [Lutiella nitroferrum 2002] Length = 323 Score = 41.2 bits (95), Expect = 0.23, Method: Compositional matrix adjust. Identities = 25/103 (24%), Positives = 45/103 (43%), Gaps = 5/103 (4%) Query: 68 PTTLKW--LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV-- 123 P++ W I+ Y +S + ++R ++ + G D +T + IR V Sbjct: 18 PSSTSWEQRIAGYDQSLQLAGKSPHTRSAYRRDLQALAALQGAQDPATLTAQQIRLAVAR 77 Query: 124 -ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK 165 ++ H S + L++ R F W + QE + NPC + PK Sbjct: 78 LHAKGHIGRSLARMLSAWRGFFDWLIEQEKLPANPCHGIRPPK 120 >gi|268319602|ref|YP_003293258.1| tyrosine recombinase xerD [Lactobacillus johnsonii FI9785] gi|262397977|emb|CAX66991.1| tyrosine recombinase xerD [Lactobacillus johnsonii FI9785] Length = 302 Score = 41.2 bits (95), Expect = 0.23, Method: Compositional matrix adjust. Identities = 52/262 (19%), Positives = 109/262 (41%), Gaps = 25/262 (9%) Query: 95 FESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVA 154 + SY + KS + DY + + + + +S + ++S+R ++W +RQ+ + Sbjct: 39 YLSYLEDQNEKSWEVDY--LVVDAFLATQKDKGKATTSISRMISSLRKFYQWLLRQDIIE 96 Query: 155 INPCLSVERPKRKTEGIRPWTKEDMQQF----KSFWSEGSQPRLAFEFLLYSGLRCSD-- 208 +P + ++ PK + ++E++ + + G + R E L +G+R S+ Sbjct: 97 RDPLVKIDSPKSERRLPTALSEEEVTKLLDAPDTNTRLGIRDRAMLEVLYATGMRVSELI 156 Query: 209 SCRAGVQHLQNNIFSI--KTQKTGTIITVELP----DGFMKLLAMTPIGK-----ETFFI 257 + R G H + I + K K + E+ + + K + + K + F+ Sbjct: 157 NLRTGDIHSELKIIRVLGKGSKERLVPITEVALSWLEKYQKDVRENQVLKSGQFTDVIFL 216 Query: 258 NNDKQKMNATQFSIWFKAK--ATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGW 313 NN ++ T+ ++W K K G+ K+ H +R AT + GA + G Sbjct: 217 NNHGHQL--TRQAVWQKIKKYCQLIGITKNVTPHTLRHTFATHLLENGADLRVVQEILGH 274 Query: 314 KTVDQAETYTKGADRIRLGIKN 335 + + YT + L + N Sbjct: 275 SDITTTQIYTNLTQKHILEVYN 296 >gi|167038625|ref|YP_001666203.1| phage integrase family protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320117017|ref|YP_004187176.1| integrase family protein [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166857459|gb|ABY95867.1| phage integrase family protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319930108|gb|ADV80793.1| integrase family protein [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 372 Score = 41.2 bits (95), Expect = 0.23, Method: Compositional matrix adjust. Identities = 33/119 (27%), Positives = 52/119 (43%), Gaps = 7/119 (5%) Query: 95 FESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVL---FKWAVRQE 151 E YF + GD + K+ I++ K S RVL K AV + Sbjct: 91 IELYFKPYL---GDIELTKLKPVMIQNYYNKLKELGLSDTTINYHHRVLKSALKKAVVWQ 147 Query: 152 YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSC 210 ++ NPC VE PK+ I W+ D+++ K + + + L F LY+G+R + C Sbjct: 148 LISKNPCDYVEPPKKNKNEITVWSINDVKKAKEIFKD-TPIYLHFMLALYTGMRIGEIC 205 >gi|154487218|ref|ZP_02028625.1| hypothetical protein BIFADO_01059 [Bifidobacterium adolescentis L2-32] gi|154085081|gb|EDN84126.1| hypothetical protein BIFADO_01059 [Bifidobacterium adolescentis L2-32] Length = 287 Score = 41.2 bits (95), Expect = 0.24, Method: Compositional matrix adjust. Identities = 47/208 (22%), Positives = 86/208 (41%), Gaps = 14/208 (6%) Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 R ++ + L+ + L+++ + Y+ NP V RPK G T +Q + F Sbjct: 60 RPAAKNTVCRNLSVVCCLYRYLCEEGYIDCNPGEHVRRPK--LYGHSDGTYLTREQARLF 117 Query: 186 WSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQKTGTIIT-VELP 238 +E G++ LL +G R ++ V+ HL + ++ + G V +P Sbjct: 118 LTEARGMGARTDALCSLLLLTGARVGEALGLDVEDCHLNDGRPWVRFDRKGDWSQRVAIP 177 Query: 239 DGFMKLLAMTPIGKE---TFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSA 294 + LA IG+ F + ++ + A + GV + S H +R+ Sbjct: 178 SDAAEALARL-IGERRRGAVFREDSGARLRQQTAVGIVSSVALRVGVPDISPHSLRRTFC 236 Query: 295 TISADAGATAHELMATYGWKTVDQAETY 322 T+S DAG ++MA GW + + Y Sbjct: 237 TLSRDAGVPDRDIMAAGGWNSPQMLDYY 264 >gi|217975610|ref|YP_002360280.1| integrase family protein [Shewanella baltica OS223] gi|217500805|gb|ACK48857.1| integrase family protein [Shewanella baltica OS223] Length = 451 Score = 41.2 bits (95), Expect = 0.24, Method: Compositional matrix adjust. Identities = 41/198 (20%), Positives = 80/198 (40%), Gaps = 9/198 (4%) Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-----GSQ 191 L +++ +FK A+RQ + NPC+ + + KR+ R + +MQ+ E GS Sbjct: 163 LDTLQSVFKLALRQGHCLTNPCIGIRQNKRRVLN-RFLSVAEMQRLSVALDECEKVGGSI 221 Query: 192 PRLA--FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTP 249 + A LL +G R S+ ++++ N + KTG + + + + +L+ Sbjct: 222 AQCADILRLLLLTGCRLSEITFLKGEYVRGNELHLPDSKTGAKV-LYIGQAAVDILSRYH 280 Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMA 309 T + + S+W + + + H +R A+ + G + + + Sbjct: 281 CKANTELFPMKQGASTSLVQSLWLRLRKQIGIEDVRLHDLRHTFASYAVMDGCSIPMVAS 340 Query: 310 TYGWKTVDQAETYTKGAD 327 G K V YT D Sbjct: 341 LLGHKKVTMTLRYTHVGD 358 >gi|288553931|ref|YP_003425866.1| site-specific integrase [Bacillus pseudofirmus OF4] gi|288545091|gb|ADC48974.1| site-specific integrase [Bacillus pseudofirmus OF4] Length = 348 Score = 41.2 bits (95), Expect = 0.24, Method: Compositional matrix adjust. Identities = 47/224 (20%), Positives = 91/224 (40%), Gaps = 19/224 (8%) Query: 117 KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176 KH V+++ +P S + +++ F + V ++ NP V++ ++ + I T Sbjct: 95 KHKPEYVQTKGLSPRSVNDHIKTLKTFFSFLVDEDLADFNPVSKVKKVRQIEKEIDVLTV 154 Query: 177 EDMQQFKS--FWSEGSQPR--LAFEFLLYSGLRCSDSC--RAGVQHLQNNIFSIKTQKTG 230 ++++ S + + + R + FLL + R ++ C R ++N I+ + T Sbjct: 155 DELKALMSVPYHRKYADFRDYVIMTFLLDTMCRINEVCTLRKRDIDFKDNTVHIRAEITK 214 Query: 231 TIITVELPDGFMKLLA---------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281 T +P F K A + E F++N +++ F K A KAG Sbjct: 215 TRKGRHVP--FQKRTARLLKELIKEVDVFDSEYIFLSNYGEQLEPNHFRSRLKGFAKKAG 272 Query: 282 VNKSAHG--VRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 + ++ H R AT+ +AG L G + YT Sbjct: 273 IERNVHPHLFRHTGATMFLEAGGDIRHLQLILGHADLRMTTRYT 316 >gi|213156271|ref|YP_002318691.1| phage integrase [Acinetobacter baumannii AB0057] gi|301346312|ref|ZP_07227053.1| phage integrase [Acinetobacter baumannii AB056] gi|301596472|ref|ZP_07241480.1| phage integrase [Acinetobacter baumannii AB059] gi|213055431|gb|ACJ40333.1| phage integrase [Acinetobacter baumannii AB0057] Length = 401 Score = 41.2 bits (95), Expect = 0.25, Method: Compositional matrix adjust. Identities = 64/277 (23%), Positives = 117/277 (42%), Gaps = 42/277 (15%) Query: 19 GKIIYYFR---KGHGRRIRL-PYPH----ESTFIPAYMSALT--GSTPKREYINSPRK-- 66 GK+++ R G R+ L YPH ++ + M +L G PK E +K Sbjct: 36 GKVVFQLRYRFAGKAERLDLGTYPHLSLKDARIKASEMRSLLDKGQNPKVEERVKQQKYI 95 Query: 67 KPTTLKWLISEYRKS--AHWGSLAVNSRISFESY-FDQIIRKSGDFDYRKITTKHIRSGV 123 + +TLK + ++ +S + A + R SFE + FD+I GD +IT + + + Sbjct: 96 EASTLKEVFDDWYESYCIKKKTSAKDIRRSFEHHVFDEI----GDLPIERITLQQWLAIL 151 Query: 124 ES-RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK----RKTEGIRPWTKED 178 E + PS A + LT+ + + KWA ++E V +N + + K G R T E+ Sbjct: 152 EELAEEVPSIAERILTNAKQVLKWAKKREIVEVNVLSDIYAKEDLGIEKNRGKRVLTDEE 211 Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGV--QHLQNN--------IFSIKTQK 228 + W + + + ++ L CR G + L+++ I ++ K Sbjct: 212 ITM---VWKAIDESKALLKNKIFLKLCLMYGCRNGELRKALKSDFDLKRKVWIVPVENNK 268 Query: 229 TG-----TIITVELPDGFMKLLAMTPIGKETFFINND 260 G I+ LP+ ++ + +F+ ND Sbjct: 269 VGKKTGREIVRPILPEMEELIVEAMSLNDSEYFLTND 305 >gi|126175914|ref|YP_001052063.1| phage integrase family protein [Shewanella baltica OS155] gi|125999119|gb|ABN63194.1| phage integrase family protein [Shewanella baltica OS155] Length = 451 Score = 41.2 bits (95), Expect = 0.25, Method: Compositional matrix adjust. Identities = 41/198 (20%), Positives = 80/198 (40%), Gaps = 9/198 (4%) Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-----GSQ 191 L +++ +FK A+RQ + NPC+ + + KR+ R + +MQ+ E GS Sbjct: 163 LDTLQSVFKLALRQGHCLTNPCIGIRQNKRRVLN-RFLSVAEMQRLSVALDECEEVGGSI 221 Query: 192 PRLA--FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTP 249 + A LL +G R S+ ++++ N + KTG + + + + +L+ Sbjct: 222 AQCADILRLLLLTGCRLSEITFLKGEYVRGNELHLPDSKTGAKV-LYIGQAAVDILSRYH 280 Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMA 309 T + + S+W + + + H +R A+ + G + + + Sbjct: 281 CKANTELFPMKQGASTSLVQSLWLRLRKQIGIEDVRLHDLRHTFASYAVMDGCSIPMVAS 340 Query: 310 TYGWKTVDQAETYTKGAD 327 G K V YT D Sbjct: 341 LLGHKKVTMTLRYTHVGD 358 >gi|77919114|ref|YP_356929.1| site-specific recombinase [Pelobacter carbinolicus DSM 2380] gi|77545197|gb|ABA88759.1| tyrosine recombinase XerD subunit [Pelobacter carbinolicus DSM 2380] Length = 295 Score = 41.2 bits (95), Expect = 0.25, Method: Compositional matrix adjust. Identities = 45/220 (20%), Positives = 88/220 (40%), Gaps = 17/220 (7%) Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 S ++ R + S + L S+R+ ++ + + NP V PK + + T ++++ Sbjct: 58 SALKERGLSARSRARKLVSLRMFHRFLLAENLATTNPAAQVAAPKSFAKLPQILTPDEVE 117 Query: 181 QFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-----FSIKTQKTGT 231 S + + + E L +GLR S+ +Q LQ ++ F + ++ Sbjct: 118 SLLSAPGNTTCFDLRDKAMLEILYATGLRVSELVGLTLQDLQLDVGYLTAFGKRAKQRIV 177 Query: 232 IITVELPDGFMKLLA------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS 285 + + ++ L+ +G F+N + F K +A +AG+NK+ Sbjct: 178 PLGDAAREAVLEYLSHGRGELAGEVGSGFLFLNRSGNGLTRQGFWKMMKRRAMEAGINKN 237 Query: 286 A--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 H +R AT D GA + A G + + YT Sbjct: 238 ITPHTLRHSFATHLLDNGADLRAVQAMLGHADISTTQIYT 277 >gi|260856279|ref|YP_003230170.1| integrase [Escherichia coli O26:H11 str. 11368] gi|260868958|ref|YP_003235360.1| putative integrase [Escherichia coli O111:H- str. 11128] gi|257754928|dbj|BAI26430.1| integrase [Escherichia coli O26:H11 str. 11368] gi|257765314|dbj|BAI36809.1| putative integrase [Escherichia coli O111:H- str. 11128] gi|323156505|gb|EFZ42659.1| integrase [Escherichia coli EPECa14] gi|323176845|gb|EFZ62435.1| integrase [Escherichia coli 1180] Length = 356 Score = 41.2 bits (95), Expect = 0.25, Method: Compositional matrix adjust. Identities = 47/220 (21%), Positives = 87/220 (39%), Gaps = 16/220 (7%) Query: 93 ISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQ 150 + + S I RK D I+TK + + + + + +SA +++ +F+ A+ + Sbjct: 98 LDYASKIRAIRRKLPDKPLADISTKEVAAMLNTYVAEGKAASAKLIRSTLVDVFREAIAE 157 Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSC 210 +VA NP + K + R E + + + RLA + + +G R D C Sbjct: 158 GHVATNPVTATRTAKSEVRRSRLTANEYVAIYHAAEPLPIWLRLAMDLAVVTGQRVGDLC 217 Query: 211 RAGVQHLQNNIFSIKTQKTGTIITVELP---DGFMKLLAMT------PIGKETFFINNDK 261 R + +N I+ KTG + + L D LA T G ET + Sbjct: 218 RMKWSDINDNHLHIEQGKTGAKLAIPLTLTIDALNISLADTLQKCREASGSETIIASTHH 277 Query: 262 QKMNATQFSIWFKAKATKAGVNKSA-----HGVRKFSATI 296 + ++ S +F +G++ H +R SA + Sbjct: 278 EPLSPKTVSKYFTKARNASGLSFDGDPPTFHELRSLSARL 317 >gi|193066330|ref|ZP_03047380.1| integrase [Escherichia coli E22] gi|192926037|gb|EDV80681.1| integrase [Escherichia coli E22] Length = 357 Score = 41.2 bits (95), Expect = 0.26, Method: Compositional matrix adjust. Identities = 33/147 (22%), Positives = 64/147 (43%), Gaps = 2/147 (1%) Query: 93 ISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQ 150 + + S I RK D I+TK + + + + + +SA +++ +F+ A+ + Sbjct: 98 LDYASKIRAIRRKLPDKPLTDISTKEVAAMLNTYVAEGKAASAKLIRSTLVDVFREAIAE 157 Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSC 210 +VA NP + K + R E ++ + + RLA + + +G R D C Sbjct: 158 GHVATNPVTATRTAKSEVRRSRLTANEYVEIYHAAEPLPIWLRLAMDLAVVTGQRVGDLC 217 Query: 211 RAGVQHLQNNIFSIKTQKTGTIITVEL 237 R + +N I+ KTG + + L Sbjct: 218 RMKWSDINDNHLHIEQSKTGAKLAIPL 244 >gi|283852933|ref|ZP_06370193.1| tyrosine recombinase XerD [Desulfovibrio sp. FW1012B] gi|283571691|gb|EFC19691.1| tyrosine recombinase XerD [Desulfovibrio sp. FW1012B] Length = 309 Score = 41.2 bits (95), Expect = 0.26, Method: Compositional matrix adjust. Identities = 55/224 (24%), Positives = 94/224 (41%), Gaps = 25/224 (11%) Query: 118 HIRS-GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176 H+R+ G++SR S + L+++R F +A ++++ +P +E PK ++ Sbjct: 69 HLRTRGLQSR-----SLARHLSALRGFFAFAAAEKWLPESPAALIENPKLPRLLPDVLSR 123 Query: 177 EDMQQF----KSFWSEGSQPRLAFEFLLYSGLRCSD--SCRAGVQHLQNNIFSI--KTQK 228 ED+ + + G + R E L +GLR S+ G Q + + K K Sbjct: 124 EDVARLLDAPDTATPLGYRDRTMLELLYAAGLRVSELVGLTLGDYDAQAGLLRVFGKGAK 183 Query: 229 TGTIITVELPDGFMKLLAMTPIG----KETF-FINNDKQKMNATQFSIW--FKAKATKAG 281 L F+ +T G +E F F+N Q + ++ ++W KA A AG Sbjct: 184 ERLTPIHALAREFLSTYILTMRGAFHPREQFIFLNRSGQGL--SRQAVWKKIKAHALAAG 241 Query: 282 VNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 V+ S H +R AT + GA + G + E YT Sbjct: 242 VSTRISPHSLRHSFATHLLEGGADLRTVQMLLGHADISATEIYT 285 >gi|167994916|ref|ZP_02576006.1| site-specific recombinase, phage integrase family [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|194444962|ref|YP_002040289.1| site-specific recombinase, phage integrase family [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194403625|gb|ACF63847.1| site-specific recombinase, phage integrase family [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|205327312|gb|EDZ14076.1| site-specific recombinase, phage integrase family [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] Length = 339 Score = 41.2 bits (95), Expect = 0.26, Method: Compositional matrix adjust. Identities = 41/166 (24%), Positives = 74/166 (44%), Gaps = 25/166 (15%) Query: 4 SLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTF---IPAYMSAL--TGSTPKR 58 ++LPP V+K RTR YY++ P E+ I MSAL +R Sbjct: 10 DVKLPPRVSKTRTR-----YYYK---------PTSRETVTLGPITLTMSALWKRYEEERR 55 Query: 59 EYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH 118 Y + T + L + KSA++ LA+ ++ + + +++ G I + Sbjct: 56 NYSDV-----MTFEKLWKMFLKSAYYTELAIRTQRDYLQHQKKLLAVFGKVKADVIKPED 110 Query: 119 IRSGVESRK-HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER 163 +R ++ R + + A Q ++SM +++W + YV NPC V + Sbjct: 111 VRQFMDRRGLQSKNQANQEMSSMSRVYRWGYERGYVKGNPCAGVSK 156 >gi|319788822|ref|YP_004090137.1| integrase family protein [Ruminococcus albus 7] gi|315450689|gb|ADU24251.1| integrase family protein [Ruminococcus albus 7] Length = 359 Score = 41.2 bits (95), Expect = 0.26, Method: Compositional matrix adjust. Identities = 32/118 (27%), Positives = 56/118 (47%), Gaps = 6/118 (5%) Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194 L M+ +FK+A R EY N + PK++++ +R TK++ + KS+ +E +P L Sbjct: 130 DILVLMKSMFKYAAR-EYGFKNVFDGITMPKKQSKEVRLLTKDEENKLKSYITE--KPTL 186 Query: 195 A---FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTP 249 A +Y+GLR + C + + ++ +KT I G KL+ P Sbjct: 187 AGMGIALTMYTGLRVGELCALTWADIDLDYRTLTVKKTMQRIQNHEGGGKTKLIISEP 244 >gi|297516448|ref|ZP_06934834.1| Phage integrase family protein [Escherichia coli OP50] Length = 356 Score = 41.2 bits (95), Expect = 0.26, Method: Compositional matrix adjust. Identities = 49/215 (22%), Positives = 83/215 (38%), Gaps = 11/215 (5%) Query: 25 FRKGHGRRIRLPYPHESTFIPAYMSALTGST--PKREYINSPRKKPTTLKWLISEYRKSA 82 F G RRI + + I A + +G P INS TL + Y K Sbjct: 35 FGLGRDRRIAI-----TEAIQANIELFSGHKHKPLTARINS--DNSVTLHSWLDRYEKIL 87 Query: 83 HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKHTPSSAIQFLTSM 140 + + I++ S I R D ITTK I + + K +SA +++ Sbjct: 88 ASREIKQKTLINYMSKIKAIRRGLPDAPLEDITTKEIAAMLNGYIDKGKAASAKLIRSTL 147 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL 200 F+ A+ + ++ NP + K + R E ++ +++ S RLA E + Sbjct: 148 SDAFREAIAEGHITTNPVAATRAAKSEVRRSRLTADEYLKIYQAAESSPCWLRLAMELAV 207 Query: 201 YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235 +G R D C + + ++ KTG I + Sbjct: 208 VTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAI 242 >gi|327438335|dbj|BAK14700.1| integrase [Solibacillus silvestris StLB046] Length = 280 Score = 40.8 bits (94), Expect = 0.27, Method: Compositional matrix adjust. Identities = 45/243 (18%), Positives = 97/243 (39%), Gaps = 12/243 (4%) Query: 99 FDQIIRKSGDFDYRKITTKHIRSG-VESRKHT-PSSAIQFLTSMRVLFKWAVRQEYVAIN 156 ++ ++R GD D +T+ ++ ++S H PSS + ++ LF+W+ + Y+ N Sbjct: 31 YNLLLRFFGDIDMNGFSTEKLKEYLIQSGNHLKPSSLGHRIRCVKSLFRWSHEEGYILKN 90 Query: 157 PCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH 216 P ++ PK + ++ +++ + + + FEF+ +G R + + Sbjct: 91 PAAKLKEPKLGKRIPKFLSELEIEHLRE-ACQTTMENALFEFMYSTGCRIGEVVKLDRHD 149 Query: 217 LQNNIFSIKTQKTG-----TIITVELPDGFMKLLAMTPIGKETFFINND--KQKMNATQF 269 + S+ Q G + L FI + K++M+ Sbjct: 150 IDFRTNSVIVQGKGDKEREVYFNTRCSIWLKRYLDEREDDDPCLFITDRKPKRRMSIDNL 209 Query: 270 SIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 K + +AG+ K H +R AT + GA + + G + + + Y + + Sbjct: 210 RYIIKRVSNRAGIKKCIHPHQLRHSYATHMINNGAPIDVIQSLLGHEKSETTKIYAQLSG 269 Query: 328 RIR 330 +IR Sbjct: 270 KIR 272 >gi|320641462|gb|EFX10896.1| Site-specific recombinase, phage integrase family protein [Escherichia coli O157:H7 str. G5101] Length = 229 Score = 40.8 bits (94), Expect = 0.27, Method: Compositional matrix adjust. Identities = 44/197 (22%), Positives = 79/197 (40%), Gaps = 6/197 (3%) Query: 36 PYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISF 95 P ES + A L K E + R + T L ++ SA++ L+ ++ + Sbjct: 28 PTSRESVTLTAIEDGLAALWKKYEETVNHRDRAMTFGRLWEKFLASAYYSELSPRTQKDY 87 Query: 96 ESYFDQIIRKSGDFDYRKITTKHIRSGVESR-KHTPSSAIQFLTSMRVLFKWAVRQEYVA 154 + +++ G + +HIR ++ R + + + A +SM ++ W + YV Sbjct: 88 LQHQKKLLAVFGKVLADSVKPEHIRRYMDKRGEQSKTQANHEKSSMSRVYSWGYERGYVK 147 Query: 155 INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR-LAFEFLLYSGLRCSDSCRAG 213 NPC V + K K KE +++ S P +A E R SD Sbjct: 148 ANPCAGVSKFKAKNRERYVTDKE----YQAVLSVAPLPVFIAMEIAYLCAARVSDVLSLK 203 Query: 214 VQHLQNNIFSIKTQKTG 230 + + N+ I+ KTG Sbjct: 204 WEQIGNDGIFIQQGKTG 220 >gi|313113306|ref|ZP_07798907.1| site-specific recombinase, phage integrase family [Faecalibacterium cf. prausnitzii KLE1255] gi|310624374|gb|EFQ07728.1| site-specific recombinase, phage integrase family [Faecalibacterium cf. prausnitzii KLE1255] Length = 416 Score = 40.8 bits (94), Expect = 0.27, Method: Compositional matrix adjust. Identities = 27/83 (32%), Positives = 44/83 (53%), Gaps = 5/83 (6%) Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP--WTKEDMQQFKSF 185 +T ++ I + FK AVR++Y+ NP L V+RPK+ + RP ++K+++QQ Sbjct: 158 YTTNTVIHYHAIFGKAFKDAVRKDYLETNPMLKVDRPKKNS--FRPNFYSKDEVQQLLEV 215 Query: 186 WSEGSQPRLAFEFLLYSGLRCSD 208 S+ L Y GLR S+ Sbjct: 216 -SQDDPLHLCILITAYYGLRRSE 237 >gi|322435169|ref|YP_004217381.1| integrase family protein [Acidobacterium sp. MP5ACTX9] gi|321162896|gb|ADW68601.1| integrase family protein [Acidobacterium sp. MP5ACTX9] Length = 310 Score = 40.8 bits (94), Expect = 0.27, Method: Compositional matrix adjust. Identities = 36/112 (32%), Positives = 52/112 (46%), Gaps = 13/112 (11%) Query: 118 HIR---SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174 HIR S + +R SS + L S+R FKW ++ V NP L V PKR R Sbjct: 56 HIRGYLSVLYARGLEKSSMARALASVRSWFKWLAKEGKVEQNPALLVSTPKRAQHLPRVP 115 Query: 175 TKED----MQQFKSF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ 218 + E+ M +S W E + R+ FE L G+R S+ C + ++Q Sbjct: 116 SAEEVNRVMDSLESADGGTWPE--RDRVIFELLYGCGIRNSELCGLDMGNVQ 165 >gi|317055373|ref|YP_004103840.1| integrase family protein [Ruminococcus albus 7] gi|315447642|gb|ADU21206.1| integrase family protein [Ruminococcus albus 7] Length = 396 Score = 40.8 bits (94), Expect = 0.28, Method: Compositional matrix adjust. Identities = 41/170 (24%), Positives = 71/170 (41%), Gaps = 33/170 (19%) Query: 107 GDFDYRKITTKHIRSGVES-----------RKHTPSSAIQFLTSMRVLFKWAVRQEYVAI 155 G KIT + I++ V S + P + L+ + +F + V+ ++ Sbjct: 105 GHLRMDKITPRQIQAFVNSLSKEGANERTGKPLAPKTIRHNLSFVSDVFAYGVKMGVISD 164 Query: 156 NPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS-EGSQPRLAFEFLLYSGLRCSDSCRAGV 214 NPC V PK + + +T E +Q+F S + E + R F ++YSG R + G+ Sbjct: 165 NPCAKVTLPKNEQTEKKIYTPEQVQRFLSLLNDEPLKYRTFFNLMIYSGFRRGEML--GL 222 Query: 215 Q----HLQNNIFSIK-----TQKTGTII----------TVELPDGFMKLL 245 + +NNI S++ T K G T++ P M +L Sbjct: 223 EWKDVDFENNIISVRRTSNYTAKKGVYTDTTKTRKSQRTLKFPQAIMDML 272 >gi|191166609|ref|ZP_03028438.1| integrase [Escherichia coli B7A] gi|190903414|gb|EDV63134.1| integrase [Escherichia coli B7A] Length = 357 Score = 40.8 bits (94), Expect = 0.28, Method: Compositional matrix adjust. Identities = 33/147 (22%), Positives = 64/147 (43%), Gaps = 2/147 (1%) Query: 93 ISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQ 150 + + S I RK D I+TK + + + + + +SA +++ +F+ A+ + Sbjct: 98 LDYASKIRAIRRKLPDKPLTDISTKEVAAMLNTYVAEGKAASAKLIRSTLVDVFREAIAE 157 Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSC 210 +VA NP + K + R E ++ + + RLA + + +G R D C Sbjct: 158 GHVATNPVTATRTAKSEVRRSRLTANEYVEIYHAAEPLPIWLRLAMDLAVVTGQRVGDLC 217 Query: 211 RAGVQHLQNNIFSIKTQKTGTIITVEL 237 R + +N I+ KTG + + L Sbjct: 218 RMKWSDINDNHLHIEQSKTGAKLAIPL 244 >gi|134096115|ref|YP_001101190.1| tyrosine recombinase xerC [Herminiimonas arsenicoxydans] Length = 296 Score = 40.8 bits (94), Expect = 0.28, Method: Compositional matrix adjust. Identities = 33/123 (26%), Positives = 50/123 (40%), Gaps = 13/123 (10%) Query: 109 FDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168 F RK + G+ +R S + L++ R F W Q VA NP ++ PKR Sbjct: 35 FQIRKFAAQLHAKGLNAR-----SIARKLSAWRGFFTWLSEQNAVASNPVDGIKAPKRNK 89 Query: 169 EGIRPWTKEDMQQFKSFWSEGSQP--------RLAFEFLLYSGLRCSDSCRAGVQHLQNN 220 + +D + S S G R FE L SGLR S+ +++ Q N Sbjct: 90 PLPKALAADDAVRLVSSNSPGKNADATMQLCNRAMFELLYSSGLRASELVGLDLKYAQEN 149 Query: 221 IFS 223 ++ Sbjct: 150 RYT 152 >gi|310822341|ref|YP_003954699.1| Tyrosine recombinase XerC [Stigmatella aurantiaca DW4/3-1] gi|309395413|gb|ADO72872.1| Tyrosine recombinase XerC [Stigmatella aurantiaca DW4/3-1] Length = 300 Score = 40.8 bits (94), Expect = 0.28, Method: Compositional matrix adjust. Identities = 48/224 (21%), Positives = 88/224 (39%), Gaps = 24/224 (10%) Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK--RKTEGIRP----WT 175 G S H P+S + L S++ +K+ VRQ+ ++ +P V+ PK + + P + Sbjct: 61 GTLSVDHAPASRGRRLASIKSFYKYLVRQKLLSASPAKLVKSPKLPKSLPKVLPVDEVFA 120 Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT---I 232 +M K+ G + R E L GLR S+ C + + + ++ G + Sbjct: 121 ILEMPSLKTVL--GLRDRAILEILYGGGLRISELCGLNLLDVDRSGRIVRVMGKGGKERL 178 Query: 233 ITVELP-----DGFM----KLLAMTPIGK--ETFFINNDKQKMNATQFSIWFKAKATKAG 281 V P + ++ +LLA G+ E F+N ++ + K Sbjct: 179 CPVNEPSIRALEAYLARRGELLATPHAGQDPEAMFLNYRGGRLTPRSIARHLDTYVVKCA 238 Query: 282 VNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 + + S H +R AT GA + G ++ + YT Sbjct: 239 LTRKVSPHALRHSFATHLLGGGADVRSIQELLGHASLSTTQRYT 282 >gi|210616044|ref|ZP_03290916.1| hypothetical protein CLONEX_03135 [Clostridium nexile DSM 1787] gi|210149952|gb|EEA80961.1| hypothetical protein CLONEX_03135 [Clostridium nexile DSM 1787] Length = 400 Score = 40.8 bits (94), Expect = 0.28, Method: Compositional matrix adjust. Identities = 29/97 (29%), Positives = 48/97 (49%), Gaps = 8/97 (8%) Query: 97 SYFDQIIRKS-GDFDYRKITTKHIRSGVESR-----KHTPSSAIQFLTSMRVLFKWAVRQ 150 SY++ ++ S G + I T H++ + H S I+F+ S + AV Sbjct: 94 SYYNSRVKNSIGKMYLQDIKTYHVQKFLNDLIDSGLAHGTVSNIRFMLSD--MLDKAVLS 151 Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 EY+ NPC+ VE PK + R T+E+ ++F +F S Sbjct: 152 EYIRKNPCIGVEMPKEVKKERRVLTREEQEKFFTFAS 188 >gi|188586285|ref|YP_001917830.1| tyrosine recombinase XerD subunit [Natranaerobius thermophilus JW/NM-WN-LF] gi|179350972|gb|ACB85242.1| tyrosine recombinase XerD subunit [Natranaerobius thermophilus JW/NM-WN-LF] Length = 295 Score = 40.8 bits (94), Expect = 0.28, Method: Compositional matrix adjust. Identities = 43/210 (20%), Positives = 88/210 (41%), Gaps = 29/210 (13%) Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKT---EGIRP------WTKEDMQQFKSFWS 187 + S+R F++ +++ ++ NP +E PK++ E + P + D FK Sbjct: 74 IASVRSFFQFLLQEGMISENPSTDLETPKQEKKLPEILSPQEVDKLLNQPDTTDFK---- 129 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM 247 G + + E L +G+R S+ V+H+ +N I + G + +P G M + ++ Sbjct: 130 -GKRDKAMLEVLYATGMRVSELISLNVEHVDSNNGYILCKGKGDKERI-VPLGKMAIKSV 187 Query: 248 TP------------IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFS 293 + + + F+N+ ++++ F K A K G+ + + H +R Sbjct: 188 SDYISKSRPQLRKNLSEPALFLNHHGKRLSRQGFWKILKKYAEKIGIKQKITPHTLRHSF 247 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYT 323 AT + GA + G + + YT Sbjct: 248 ATHLLENGADLRAVQEMLGHSDISTTQIYT 277 >gi|307307476|ref|ZP_07587210.1| integrase family protein [Shewanella baltica BA175] gi|306910151|gb|EFN40585.1| integrase family protein [Shewanella baltica BA175] Length = 451 Score = 40.8 bits (94), Expect = 0.29, Method: Compositional matrix adjust. Identities = 41/198 (20%), Positives = 80/198 (40%), Gaps = 9/198 (4%) Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-----GSQ 191 L +++ +FK A+RQ + NPC+ + + KR+ R + +MQ+ E GS Sbjct: 163 LDTLQSVFKLALRQGHCLTNPCIGIRQNKRRVLN-RFLSVAEMQRLSVALDECETVGGSI 221 Query: 192 PRLA--FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTP 249 + A LL +G R S+ ++++ N + KTG + + + + +L+ Sbjct: 222 AQCADILRLLLLTGCRLSEITFLKGEYVRGNELHLPDSKTGAKV-LYIGQAAVDILSRYH 280 Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMA 309 T + + S+W + + + H +R A+ + G + + + Sbjct: 281 CKANTELFPMKQGASTSLVQSLWLRLRKQIGIEDVRLHDLRHTFASYAVMDGCSIPMVAS 340 Query: 310 TYGWKTVDQAETYTKGAD 327 G K V YT D Sbjct: 341 LLGHKKVTMTLRYTHVGD 358 >gi|193222420|emb|CAL63069.2| Tyrosine recombinase xerC [Herminiimonas arsenicoxydans] Length = 318 Score = 40.8 bits (94), Expect = 0.29, Method: Compositional matrix adjust. Identities = 33/123 (26%), Positives = 50/123 (40%), Gaps = 13/123 (10%) Query: 109 FDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168 F RK + G+ +R S + L++ R F W Q VA NP ++ PKR Sbjct: 57 FQIRKFAAQLHAKGLNAR-----SIARKLSAWRGFFTWLSEQNAVASNPVDGIKAPKRNK 111 Query: 169 EGIRPWTKEDMQQFKSFWSEGSQP--------RLAFEFLLYSGLRCSDSCRAGVQHLQNN 220 + +D + S S G R FE L SGLR S+ +++ Q N Sbjct: 112 PLPKALAADDAVRLVSSNSPGKNADATMQLCNRAMFELLYSSGLRASELVGLDLKYAQEN 171 Query: 221 IFS 223 ++ Sbjct: 172 RYT 174 >gi|296133056|ref|YP_003640303.1| tyrosine recombinase XerC [Thermincola sp. JR] gi|296031634|gb|ADG82402.1| tyrosine recombinase XerC [Thermincola potens JR] Length = 302 Score = 40.8 bits (94), Expect = 0.29, Method: Compositional matrix adjust. Identities = 42/206 (20%), Positives = 75/206 (36%), Gaps = 19/206 (9%) Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF----KSFWSEGSQP 192 L +MR F++ R+E + NP + V PK + + ++D++ + G + Sbjct: 79 LAAMRTFFRFLCREEVITRNPLIEVATPKVEKRLPQFLYQDDIRNLIEAPERNTPRGLRD 138 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-------------TIITVELPD 239 R E L SG+R S+ + + N ++ G + L Sbjct: 139 RAILETLYASGIRVSELVNLDMTDIDLNTGYVRVMGKGAKERVVPLGQFAINALKAYLTH 198 Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS 297 G +L + E F+N Q+++ K + + S H +R AT Sbjct: 199 GRTRLACRSKEPSEAVFLNKAGQRISVRSIRDIVNKYVRKISIRQRVSPHIIRHSFATHL 258 Query: 298 ADAGATAHELMATYGWKTVDQAETYT 323 DAGA + G + + YT Sbjct: 259 LDAGADLRTVQELLGHVKMSTTQIYT 284 >gi|312200217|ref|YP_004020278.1| integrase family protein [Frankia sp. EuI1c] gi|311231553|gb|ADP84408.1| integrase family protein [Frankia sp. EuI1c] Length = 310 Score = 40.8 bits (94), Expect = 0.29, Method: Compositional matrix adjust. Identities = 42/184 (22%), Positives = 78/184 (42%), Gaps = 24/184 (13%) Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA- 195 L S+ ++ +A+ + + +P V+RPK P D + ++ PR + Sbjct: 94 LASVASVYAYALDEHLIDASPLAKVKRPKTTDRHQAPGMTLDQARAFLAAADADGPRTSA 153 Query: 196 -FEFLLYSGLRCSDSCRAGVQHLQNN----IFSI--KTQKTGTII----TVELPDGFMKL 244 LL +GLR S++ A V L + + I K K T++ T D ++ Sbjct: 154 LMRLLLANGLRVSEAIEADVDQLGHERGHRVLRIVGKGSKAATVVLAPPTARAIDAYLAG 213 Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIW--FKAKATKAGVNK---SAHGVRKFSATISAD 299 P+ F+ +++ + ++W + A +AG+ S H +R S T+ D Sbjct: 214 RTAGPL-----FVTATGNRLD--RPAVWRTIRRLAKRAGLGDLQLSPHSLRATSVTLLLD 266 Query: 300 AGAT 303 AGA+ Sbjct: 267 AGAS 270 >gi|330970597|gb|EGH70663.1| prophage PSPPH06, site-specific recombinase phage integrase family protein [Pseudomonas syringae pv. aceris str. M302273PT] Length = 382 Score = 40.8 bits (94), Expect = 0.30, Method: Compositional matrix adjust. Identities = 26/109 (23%), Positives = 51/109 (46%), Gaps = 9/109 (8%) Query: 70 TLKWLISEYRKSAHWGSLA-------VNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG 122 +L++L E+ +S + L+ SR +Y ++ + G+ D +K T ++ Sbjct: 76 SLQYLCDEFHRSQQFKELSKKTQDDYCYSREVLVAYPTKLDKPLGELDVKKFTPAMVQRI 135 Query: 123 VE--SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169 ++ + TPS A L +R L +W + +V NP +E PK + + Sbjct: 136 IDKIAEAGTPSKAAHALRYLRRLMQWGRNRGFVTDNPAKGIEAPKERKQ 184 >gi|254440879|ref|ZP_05054372.1| site-specific recombinase, phage integrase family protein [Octadecabacter antarcticus 307] gi|198250957|gb|EDY75272.1| site-specific recombinase, phage integrase family protein [Octadecabacter antarcticus 307] Length = 244 Score = 40.8 bits (94), Expect = 0.30, Method: Compositional matrix adjust. Identities = 40/201 (19%), Positives = 88/201 (43%), Gaps = 21/201 (10%) Query: 110 DYRKITTKHIRSGVESRKH-----TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP 164 D+ ++ I + R+H +PS+A L S R ++ A R + P +++E Sbjct: 11 DWMRLPLDEISKAMTVRRHHDMAGSPSAANHVLRSFRTIYNHARRTGDLPECPTMAIEWF 70 Query: 165 KRKTEGIRPWTKEDMQQFKSFWSEGSQP--RLAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222 + K +G ED++ ++ + P R+ +E +L++GLR ++ + +Q + Sbjct: 71 EDKPDG---RIIEDLKHWRKTIDDLPNPIHRIFYELILFTGLRKTEVFTLKWEQIQEDRI 127 Query: 223 SIKTQKTGTIITVELPDGFMKLLA-MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281 + K G + + ++LA + P+ ++ F + + + T + + Sbjct: 128 HLPMTKNGRSFDLPISQLHHEILAPLRPLSRDWVFPSPKSESGHIT--------RPERLK 179 Query: 282 VNKSAHGVRKFSATISADAGA 302 N H R+ AT++ +AG Sbjct: 180 YNPHMH--RRTFATVAMEAGV 198 >gi|220931948|ref|YP_002508856.1| phage integrase family protein [Halothermothrix orenii H 168] gi|219993258|gb|ACL69861.1| phage integrase family protein [Halothermothrix orenii H 168] Length = 310 Score = 40.8 bits (94), Expect = 0.30, Method: Compositional matrix adjust. Identities = 34/144 (23%), Positives = 63/144 (43%), Gaps = 20/144 (13%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR----SGVESRKHTP 130 + EY + + + + + + F++ DF KI HI + + P Sbjct: 29 VKEYERDLNLFYIYLTNEMGFKN----------DFSLDKINKYHIAEFLGDTILVHDNAP 78 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK-EDMQQF----KSF 185 ++ + L S+R FK+ V+ EY+ +NP ++E K + + K D Q++ K Sbjct: 79 TTRNRKLYSIRSFFKFLVKYEYIKVNPAATIEASKTEVRAEPIYMKLNDAQKYIETIKKH 138 Query: 186 WSEGSQPRLAF-EFLLYSGLRCSD 208 + LA + LY+GLR S+ Sbjct: 139 GGVNLKRDLAIVKLFLYAGLRVSE 162 >gi|237711591|ref|ZP_04542072.1| integrase [Bacteroides sp. 9_1_42FAA] gi|229454286|gb|EEO60007.1| integrase [Bacteroides sp. 9_1_42FAA] Length = 380 Score = 40.8 bits (94), Expect = 0.31, Method: Compositional matrix adjust. Identities = 52/214 (24%), Positives = 84/214 (39%), Gaps = 21/214 (9%) Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR-PWTKEDMQQFKSFWS 187 +P +A + T++R AVR++ + NP +E TE I+ P +K D + Sbjct: 161 SPKTAHSYYTTLRTALNEAVREKLIESNPWYKLE----MTEKIKVPESKRDFLTIEEIKK 216 Query: 188 EGSQP------RLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQKTGTIITVEL 237 + P R A+ F + GLR SD + + + + + S+ KT + + L Sbjct: 217 MIATPFFNEHVRQAYLFSCFCGLRISDIRKLRWRDISISGGQWLVSVVMTKTTNPVYIPL 276 Query: 238 PDGFMKLL-AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSA 294 +K L E NA I K A KAGV K+ H R A Sbjct: 277 SSQAVKWLPERKDCAPEDLVFGG---LPNAGNLCISLKNWADKAGVKKNVTFHTARHSCA 333 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADR 328 + GA + + G ++V + Y K D+ Sbjct: 334 VLLLTLGADIYTVSKILGHRSVRATQVYAKIVDK 367 >gi|228476153|ref|ZP_04060861.1| tyrosine recombinase XerD [Staphylococcus hominis SK119] gi|314936376|ref|ZP_07843723.1| tyrosine recombinase XerD [Staphylococcus hominis subsp. hominis C80] gi|228269976|gb|EEK11456.1| tyrosine recombinase XerD [Staphylococcus hominis SK119] gi|313654995|gb|EFS18740.1| tyrosine recombinase XerD [Staphylococcus hominis subsp. hominis C80] Length = 295 Score = 40.8 bits (94), Expect = 0.31, Method: Compositional matrix adjust. Identities = 45/214 (21%), Positives = 91/214 (42%), Gaps = 21/214 (9%) Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF--- 185 + S +F++++R ++A+R++Y A +P + +E PK + + E++ Q Sbjct: 66 SAKSMARFISTIRNFHQFALREKYAAKDPTVLIETPKYEKKLPDVLEVEEVLQLLETPDL 125 Query: 186 -WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT---II-----TVE 236 G + R E L +G+R S+ + ++ + + ++ G II +E Sbjct: 126 NKKNGYRDRTILELLYATGMRVSELIQINIEDINLIMGFVRVFGKGNKERIIPLGDTVIE 185 Query: 237 LPDGFMKLLAMTPIGK---ETFFINNDKQKMNATQFSIW--FKAKATKAGVNKSA--HGV 289 D +++ + + K F+N + + T+ IW K KA +NK+ H + Sbjct: 186 FLDTYLEKVRPQLLKKTITNVLFLNMHGRPL--TRQGIWKMIKQYGLKANINKTLTPHTL 243 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYT 323 R AT + GA + G + + YT Sbjct: 244 RHSFATHLLENGADLRAVQEMLGHSDISTTQLYT 277 >gi|158522508|ref|YP_001530378.1| integrase family protein [Desulfococcus oleovorans Hxd3] gi|158511334|gb|ABW68301.1| integrase family protein [Desulfococcus oleovorans Hxd3] Length = 308 Score = 40.8 bits (94), Expect = 0.31, Method: Compositional matrix adjust. Identities = 47/220 (21%), Positives = 90/220 (40%), Gaps = 21/220 (9%) Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK--RKTEGIRPWTKEDMQ 180 + +K S+ + L+ +R F++ ++ + NP +V PK RK + +DM Sbjct: 73 LHKKKMDKSTVSRKLSVLRSFFRYLEKRGIMTGNPARAVLSPKIGRKIPAF--LSVDDMF 130 Query: 181 QFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNN--IFSI-------KTQ 227 + + + + R FE + +G+R S++ H++ + +F + + Sbjct: 131 RLLDASTGDTLLDLRNRAIFETIYSTGIRVSEAAGLDAAHVETDERVFRVYGKGAKERVV 190 Query: 228 KTGTIITVELPDGFMKLLAMTPIGKET--FFINNDKQKMNATQFSIWFKAKATKAG--VN 283 G + +L T IG E F+N ++ ++ K A + G V+ Sbjct: 191 PVGKKALASIAAYRTRLFEETGIGVEEGPLFLNKNRGRLTTRSMDRILKQTALRCGLTVS 250 Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 S H +R AT DAGA + G K++ + YT Sbjct: 251 LSPHALRHSFATHMLDAGADLRTVQEILGHKSLSTTQKYT 290 >gi|323967241|gb|EGB62665.1| bacteriophage lambda integrase domain-containing protein [Escherichia coli M863] Length = 357 Score = 40.8 bits (94), Expect = 0.31, Method: Compositional matrix adjust. Identities = 33/147 (22%), Positives = 64/147 (43%), Gaps = 2/147 (1%) Query: 93 ISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQ 150 + + S I RK D I+TK + + + + + +SA +++ +F+ A+ + Sbjct: 98 LDYASKIRAIRRKLPDKPLADISTKEVATMLNTYVAEGKAASAKLIRSTLVDVFREAIAE 157 Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSC 210 +VA NP + K + R E ++ + + RLA + + +G R D C Sbjct: 158 GHVATNPVTATRTAKSEVRRSRLTANEYVEIYHAAEPLPIWLRLAMDLAVVTGQRVGDLC 217 Query: 211 RAGVQHLQNNIFSIKTQKTGTIITVEL 237 R + +N I+ KTG + + L Sbjct: 218 RMKWSDINDNHLHIEQSKTGAKLAIPL 244 >gi|326789825|ref|YP_004307646.1| integrase family protein [Clostridium lentocellum DSM 5427] gi|326540589|gb|ADZ82448.1| integrase family protein [Clostridium lentocellum DSM 5427] Length = 376 Score = 40.8 bits (94), Expect = 0.31, Method: Compositional matrix adjust. Identities = 49/251 (19%), Positives = 96/251 (38%), Gaps = 41/251 (16%) Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP--WTKEDMQQFKSFWS 187 PS+ L+ ++ F+ AV+ E + NPC+ V+RP+++ R T ++M++ + Sbjct: 119 PSTVSNNLSCLKKTFEMAVKWELIIKNPCMYVDRPQKRKYQNRGQLMTVDEMKKLLEIYE 178 Query: 188 EGS-----QPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFS----------------- 223 S + AF L GLR S+ + + +NNI Sbjct: 179 NLSTKPSHMHKCAFYIALGCGLRNSEIRALTLDDIDFENNIIRVNKQFGKYTEKGKVVEG 238 Query: 224 -IKTQKTGTIITVELPD-------GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKA 275 I T+ +I + PD ++ L P+ K+ F+ + + S +F Sbjct: 239 YITTKSESSIRDIYAPDFVIAAIKNYISTLDCIPLSKQLFWSARTNKPVGRQCLSTFFTN 298 Query: 276 KATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIK 334 + H +R AT+ A G L G ++ Y + + + Sbjct: 299 ILKNNNLPVIDFHDLRHLHATLLASKGVNMKSLSNRMGHSKLETTNIYMQPINEV----- 353 Query: 335 NSRRISSVVDS 345 ++++ V+D+ Sbjct: 354 -DKQVAKVLDN 363 >gi|254167351|ref|ZP_04874203.1| site-specific recombinase, phage integrase family protein [Aciduliprofundum boonei T469] gi|197623614|gb|EDY36177.1| site-specific recombinase, phage integrase family protein [Aciduliprofundum boonei T469] Length = 279 Score = 40.8 bits (94), Expect = 0.31, Method: Compositional matrix adjust. Identities = 44/210 (20%), Positives = 83/210 (39%), Gaps = 14/210 (6%) Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 RK++ +S ++R FK Y ++ ++ PKR + + +++++++ Sbjct: 62 RKYSKNSLYLATKAIRSYFK------YKNLDTAKNLSSPKRPKQMPKYLSEDEVKRLIEA 115 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN--IFSIKTQKTG----TIITVELPD 239 SE + L YSGLR S+ C ++ + N I +++ K +++ + + Sbjct: 116 SSENPRDYAIISLLAYSGLRVSELCNLKIEDVDFNERIVYVRSGKGDKDRIVVVSPRVIE 175 Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATIS 297 L E F + K++ Q K A KAG+ K H +R AT Sbjct: 176 ALQNYLYTREDDMEYLFASQKSNKISRVQVFRIVKKYAEKAGIKKEVTPHVLRHTLATTL 235 Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGAD 327 G + G +V + YT D Sbjct: 236 LRRGVDIRFIQQFLGHSSVATTQIYTHVDD 265 >gi|326409495|gb|ADZ66560.1| phage integrase [Brucella melitensis M28] Length = 92 Score = 40.8 bits (94), Expect = 0.32, Method: Compositional matrix adjust. Identities = 19/53 (35%), Positives = 30/53 (56%) Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339 HG+RK I A+ GA+ ++M T+G + AE YT+ A++ RL R+ Sbjct: 33 HGLRKTLGKILAEGGASTRQIMDTFGHDDIAHAELYTREAEQARLATDGMSRV 85 >gi|293572845|ref|ZP_06683798.1| DNA integration/recombination/invertion protein [Enterococcus faecium E980] gi|291607092|gb|EFF36461.1| DNA integration/recombination/invertion protein [Enterococcus faecium E980] Length = 380 Score = 40.8 bits (94), Expect = 0.32, Method: Compositional matrix adjust. Identities = 44/180 (24%), Positives = 82/180 (45%), Gaps = 20/180 (11%) Query: 59 EYINS--PRKKPTTLK-----WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDY 111 EY N+ ++KP T K W+ +EY+++ +L RI + + ++ + GD Sbjct: 55 EYENNLLKKEKPKTYKDVYDLWM-TEYKRTVRGSTLLKTERI----FKNHVLEELGDIYI 109 Query: 112 RKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171 +IT I+ ++ + +A + + ++FK+AVR + NP ++ +PKR+ + Sbjct: 110 SEITPIKIQKLMDKWANKYDTAPKMMNYTGLVFKYAVRFGIIESNPTDAIRKPKRRKKTT 169 Query: 172 RPWTKEDMQQFKSFWSE-GSQPRLA----FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226 D +Q K F QP + F L +G+R + AG ++ F KT Sbjct: 170 TEEPFYDKKQLKLFLDVLYEQPNIKVQAFFRLLAMTGMRKQE---AGALEWRDIDFKAKT 226 >gi|309775658|ref|ZP_07670657.1| integrase/recombinase XerD [Erysipelotrichaceae bacterium 3_1_53] gi|308916564|gb|EFP62305.1| integrase/recombinase XerD [Erysipelotrichaceae bacterium 3_1_53] Length = 304 Score = 40.8 bits (94), Expect = 0.32, Method: Compositional matrix adjust. Identities = 58/224 (25%), Positives = 94/224 (41%), Gaps = 23/224 (10%) Query: 120 RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAI--NPCLSVERPKRKTEGIRPWTKE 177 +SGV S + S+ + L+S+R +++ EYV I NP L + PKR + Sbjct: 63 KSGV-SGEMKNSTIARKLSSLRSFYRYL--NEYVGIAQNPFLYFKTPKRSKRIPEFLFYD 119 Query: 178 DMQQFKSFWS----EGSQPRLAFEFLLYSGLRCSD--SCRAGVQHLQNNIFSI--KTQKT 229 +M F S ++ +G + R FE + GLR S+ S R LQ I +I K K Sbjct: 120 EMDTFLSSFALDTPDGLRDRAMFELMYACGLRVSEAASLRLRDIDLQERILTITGKGNKQ 179 Query: 230 GTI----ITVELPDGFMKL---LAMTPIGK-ETFFINNDKQKMN--ATQFSIWFKAKATK 279 + + EL + +++ L M P + + FIN + + Q+ + A K Sbjct: 180 RIVPFYALAGELVERYLQQVRPLWMQPSQEHDIVFINQRGKGLTTRGIQYRMQVAAAGCK 239 Query: 280 AGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 V+ H R AT D GA + G ++ + Y Sbjct: 240 LQVHVHPHMFRHSFATHLLDNGADLRVVQELLGHSSLSTTQVYV 283 >gi|229060296|ref|ZP_04197663.1| DNA integration/recombination/invertion protein [Bacillus cereus AH603] gi|228719023|gb|EEL70639.1| DNA integration/recombination/invertion protein [Bacillus cereus AH603] Length = 369 Score = 40.8 bits (94), Expect = 0.32, Method: Compositional matrix adjust. Identities = 27/118 (22%), Positives = 56/118 (47%), Gaps = 5/118 (4%) Query: 95 FESYFDQ-IIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVL---FKWAVRQ 150 + ++ +Q +I G K+ HI+ +S + L R+L AV+Q Sbjct: 88 YRAFINQHVIPSIGMITLHKLNVMHIQKCYKSSIDKGITNNSILLMHRILKSSLNLAVKQ 147 Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSD 208 ++ NP E PK++ I+ WT+E++++F S+ S+ + + + +G+R + Sbjct: 148 NVLSRNPAAFAEIPKKEKTSIQTWTEEEVKKF-LLHSQESRYHIGYLLAITTGMRLGE 204 >gi|301022623|ref|ZP_07186494.1| phage integrase, SAM-like domain protein [Escherichia coli MS 196-1] gi|299881195|gb|EFI89406.1| phage integrase, SAM-like domain protein [Escherichia coli MS 196-1] Length = 327 Score = 40.8 bits (94), Expect = 0.33, Method: Compositional matrix adjust. Identities = 33/147 (22%), Positives = 64/147 (43%), Gaps = 2/147 (1%) Query: 93 ISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQ 150 + + S I RK D I+TK + + + + + +SA +++ +F+ A+ + Sbjct: 68 LDYASKIRAIRRKLPDKPLTDISTKEVAAMLNTYVAEGKAASAKLIRSTLVDVFREAIAE 127 Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSC 210 +VA NP + K + R E ++ + + RLA + + +G R D C Sbjct: 128 GHVATNPVTATRTAKSEVRRSRLTANEYVEIYHAAEPLPIWLRLAMDLAVVTGQRVGDLC 187 Query: 211 RAGVQHLQNNIFSIKTQKTGTIITVEL 237 R + +N I+ KTG + + L Sbjct: 188 RMKWSDINDNHLHIEQSKTGAKLAIPL 214 >gi|251772344|gb|EES52912.1| phage integrase family protein [Leptospirillum ferrodiazotrophum] Length = 336 Score = 40.8 bits (94), Expect = 0.33, Method: Compositional matrix adjust. Identities = 55/251 (21%), Positives = 98/251 (39%), Gaps = 33/251 (13%) Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR---------KTEGIRP 173 + R + PSS + L+S+R + + Q ++A +P + P+ +TE Sbjct: 91 LHDRGYAPSSIARILSSLRGFYGFLKTQGHIAEDPFAGISGPRANRPLPPLLTETEAETL 150 Query: 174 WTKEDMQQFKSFWSEGS--QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-KTG 230 T EG+ + R E +G+R S+ C + I S++ + K G Sbjct: 151 VTAPVRNPVPKGGDEGTSLRDRAILELFYQTGVRLSELCGLLWEDAAPGIVSLRVRGKGG 210 Query: 231 TIITVELPDGFMKLL----------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA 280 V + +K L ++P G F + D ++ Q S K A +A Sbjct: 211 KERRVPVVGEALKALCALREFLLKSGVSPTG--PLFADGDGGALSPWQVSRIVKKYAREA 268 Query: 281 GVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKN-SR 337 G+ K S H +R AT D A E+ + G ++ + Y + G+ +R Sbjct: 269 GLQKTVSPHALRHSCATHLLDREADLREIQSLLGHASLGSTQRY------LHTGLSEIAR 322 Query: 338 RISSVVDSDDP 348 ++S + D P Sbjct: 323 KLSKIRDETPP 333 >gi|81428201|ref|YP_395201.1| site-specific recombinase, prophage lsa1 integrase [Lactobacillus sakei subsp. sakei 23K] gi|78609843|emb|CAI54890.1| Site-specific recombinase, prophage lsa1 integrase [Lactobacillus sakei subsp. sakei 23K] Length = 385 Score = 40.8 bits (94), Expect = 0.34, Method: Compositional matrix adjust. Identities = 32/115 (27%), Positives = 54/115 (46%), Gaps = 13/115 (11%) Query: 100 DQIIRKSGDFDYRKITTKHIRSGVES-RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPC 158 + I+ G + R ITT +++ + K T S + +FK+A+ Q Y+ NPC Sbjct: 98 NHILPAFGKYRIRTITTSQVQTTLNKWFKQTDYSFKPWFNYTSAIFKYAILQGYIKDNPC 157 Query: 159 LSVERPKR--KTEGIRPWTKEDMQQFKSFWSEGSQP------RLAFEFLLYSGLR 205 V PK+ K + + W K+ Q K+F++ G P F L ++G+R Sbjct: 158 TRVTMPKKLDKEDTLNFWDKD---QLKTFFN-GIDPVNDLEKYTLFRVLAFTGIR 208 >gi|259047877|ref|ZP_05738278.1| phage integrase family site-specific recombinase [Granulicatella adiacens ATCC 49175] gi|259035554|gb|EEW36809.1| phage integrase family site-specific recombinase [Granulicatella adiacens ATCC 49175] Length = 393 Score = 40.8 bits (94), Expect = 0.34, Method: Compositional matrix adjust. Identities = 48/242 (19%), Positives = 100/242 (41%), Gaps = 27/242 (11%) Query: 97 SYFDQ-IIRKSGDFDYRKITTKHIRSGVES-RKHTPSSAIQFLTSMRVLFKWAVRQEYVA 154 +YF + I+ GD+ IT + ++ V + P S + +++FK+A + + Sbjct: 100 TYFKKHILPAFGDYYIDTITIQDCQAQVNRWYSNYPKSTQSYKIYAQMIFKYAQKLNLIE 159 Query: 155 INPCLSVERPKR---KTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSD--- 208 NP V+ PK K + ++ + +E + +F + + F L Y+GLRC + Sbjct: 160 KNPMSLVDLPKSGDFKDDKLKYYDRETLIRFLEYIEPFKEVYTFFYLLSYTGLRCGEAFA 219 Query: 209 -------------SCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA--MTPIGKE 253 S V + + +T+ + T+ + +L++ G E Sbjct: 220 LTWNDIDFRNHSISVNKTVARSMEDKYISQTKTKNGMRTIRINGSLERLISEWKELSGNE 279 Query: 254 TFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHELMAT 310 T+ N ++ ++++ + + G N + HG R A++ A+AGA ++ Sbjct: 280 TYVFQNRNNSFYSSNTAVYWLNQILE-GTNFPRITPHGFRHTHASLLAEAGADLKDIQDR 338 Query: 311 YG 312 G Sbjct: 339 LG 340 >gi|324009915|gb|EGB79134.1| phage integrase, SAM-like domain protein [Escherichia coli MS 57-2] Length = 357 Score = 40.4 bits (93), Expect = 0.35, Method: Compositional matrix adjust. Identities = 47/220 (21%), Positives = 86/220 (39%), Gaps = 16/220 (7%) Query: 93 ISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQ 150 + + S I RK D I+TK + + + + + +SA +++ +F+ A+ + Sbjct: 98 LDYASKIRAIRRKLPDKPLTDISTKEVAAMLNTYVAEGKAASAKLIRSTLVDVFREAIAE 157 Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSC 210 +VA NP + K + R E + + + RLA + + +G R D C Sbjct: 158 GHVATNPVTATRTAKSEVRRSRLTANEYVAIYHAAEPLPIWLRLAMDLAVVTGQRVGDLC 217 Query: 211 RAGVQHLQNNIFSIKTQKTGTIITVELP---DGFMKLLAMT------PIGKETFFINNDK 261 R + +N I+ KTG + + L D LA T G ET + Sbjct: 218 RMKWSDINDNHLHIEQSKTGAKLAIPLTLTIDALNISLADTLQKCREASGSETIIASKHH 277 Query: 262 QKMNATQFSIWFKAKATKAGVNKSA-----HGVRKFSATI 296 ++ S +F +G++ H +R SA + Sbjct: 278 DPLSPKTVSKYFTKARNASGLSFDGDPPTFHELRSLSARL 317 >gi|167763873|ref|ZP_02436000.1| hypothetical protein BACSTE_02254 [Bacteroides stercoris ATCC 43183] gi|167697989|gb|EDS14568.1| hypothetical protein BACSTE_02254 [Bacteroides stercoris ATCC 43183] Length = 316 Score = 40.4 bits (93), Expect = 0.35, Method: Compositional matrix adjust. Identities = 56/228 (24%), Positives = 89/228 (39%), Gaps = 36/228 (15%) Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS-- 187 P S + L+ ++ F + V +Y +P +E PK T E++ + S Sbjct: 78 PRSQARILSGIKSFFHFLVIADYQEADPSELLEGPKIGFRLPEVLTVEEIDRIISTVDME 137 Query: 188 --EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245 EG + R E L GLR S+ C + L IK + G G +L+ Sbjct: 138 KKEGQRNRAILETLYSCGLRVSELCNLKISDLYFEEGFIKVEGKG---------GKQRLV 188 Query: 246 AMTPIG-KET--FFINNDKQKM---------------NATQFSIW--FKAKATKAGVNK- 284 ++P KE +F + + K+ N ++ ++ K A KAG+ K Sbjct: 189 PISPRAIKEIKYWFADRNLGKIKKGYEDYVFLARWGNNISRIMVFHMIKELAEKAGITKN 248 Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 S H R AT + GA + G +++ E YT DR RL Sbjct: 249 ISPHTFRHSFATHLLEGGANLRAIQCMLGHESIATTEIYTH-IDRNRL 295 >gi|91776681|ref|YP_546437.1| tyrosine recombinase XerD [Methylobacillus flagellatus KT] gi|91710668|gb|ABE50596.1| Tyrosine recombinase XerD [Methylobacillus flagellatus KT] Length = 277 Score = 40.4 bits (93), Expect = 0.35, Method: Compositional matrix adjust. Identities = 45/215 (20%), Positives = 89/215 (41%), Gaps = 19/215 (8%) Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF----KSF 185 P S + + S+R +++A+R+ Y++ +P + +E PK + +++++++ + Sbjct: 49 PRSISRLVASLRRFYRFALRESYISADPSIHIESPKLPRSLPKSLSEDEVERLINAPDTN 108 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMK 243 + G + R E L +GLR S+ V L + + I + + T + V L + ++ Sbjct: 109 TNLGLRDRAMLETLYATGLRVSELVGMHVTELSLTDGVVRITGKGSKTRL-VPLGEQAVE 167 Query: 244 LLA----------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRK 291 LA + + F+ + M F K A AG+ S H +R Sbjct: 168 WLARYLQEGRPSILQQRLSDHLFVTQRGEGMTRQAFWYLIKRYAAIAGIQASLSPHVLRH 227 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 AT + GA + G + + YT A Sbjct: 228 AFATHLLNHGADLRVVQMLLGHADISTTQIYTHVA 262 >gi|24460043|dbj|BAC22654.1| probable integrase [Comamonas sp. NCIMB 9872] Length = 404 Score = 40.4 bits (93), Expect = 0.35, Method: Compositional matrix adjust. Identities = 46/195 (23%), Positives = 86/195 (44%), Gaps = 15/195 (7%) Query: 53 GSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYR 112 G P E + ++ T++ L+ +YR +A +LA +++ S+ +I G Sbjct: 86 GRDPAAEKRKAKSRRDWTVRQLVEDYR-TAVVPTLASSTQCSYGRNLKRIEAGLGAVKIT 144 Query: 113 KITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE-------RPK 165 K+ + +E A L + +F+ A + + +NP L VE RPK Sbjct: 145 KVEASDVVGLIERSGLGWVEANTLLIVQKAIFRRAAGKRLINVNPVLGVELSAIIGPRPK 204 Query: 166 RKTEGIRPWTKEDMQQFKSFWSEGSQPRL-AFEFLLYSGLRCSDSCRAGVQ--HLQNNIF 222 + + T++++ ++ SQ L A LL +G+R S+ +A + HL + Sbjct: 205 IRQRLM--LTRDELAAV--MHAQMSQENLLALRILLATGVRASELFQARKEHVHLDEARW 260 Query: 223 SIKTQKTGTIITVEL 237 I + KTGT + + L Sbjct: 261 HIPSSKTGTGMDIPL 275 >gi|325678355|ref|ZP_08157975.1| site-specific recombinase, phage integrase family [Ruminococcus albus 8] gi|324109856|gb|EGC04052.1| site-specific recombinase, phage integrase family [Ruminococcus albus 8] Length = 403 Score = 40.4 bits (93), Expect = 0.36, Method: Compositional matrix adjust. Identities = 58/258 (22%), Positives = 100/258 (38%), Gaps = 61/258 (23%) Query: 110 DYRKITTKHIRSGVESRKHTPSSA------IQFLTSMRVLFKWAVRQEYVAINPCLSVER 163 D +K + G R P S + F++S +F++A+R + ++ NPC V Sbjct: 122 DIQKFINSLAKPGANKRNGKPLSQKTMRHHLSFISS---IFEYAIRLDMISTNPCSKVII 178 Query: 164 PKRKTEG---IRP----WTKEDMQQFKSFWSEGS-QPRLAFEFLLYSGLRCSDSCRAG-- 213 PK G +P +TKE ++F + E + R+ F +Y+G CR G Sbjct: 179 PKIDANGKVYKKPEKHIYTKEQAKEFMTILREAPIKYRVFFTLAIYTG------CRRGEI 232 Query: 214 ----------------VQH-----LQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGK 252 + H +N I++ T+ + V+LP +KLL + Sbjct: 233 LGIEWKNIDFENRTIMIDHTSNYTAKNGIYTDATKTDKSTRLVDLPPTVIKLLKAYKHDQ 292 Query: 253 ETFFIN-NDKQKMNATQFSIWFKAKATKAG----VNKSA----------HGVRKFSATIS 297 +++ N DK + + F+ W A A + K H +R F A++ Sbjct: 293 DSYKANLGDKWQEHDRLFTKWDGAPMHPATPYSWLKKECERRSFPFYGVHTLRHFFASVE 352 Query: 298 ADAGATAHELMATYGWKT 315 +AG + A G T Sbjct: 353 IEAGVDPTTVAAMLGHST 370 >gi|237745687|ref|ZP_04576167.1| phage integrase [Oxalobacter formigenes HOxBLS] gi|229377038|gb|EEO27129.1| phage integrase [Oxalobacter formigenes HOxBLS] Length = 348 Score = 40.4 bits (93), Expect = 0.36, Method: Compositional matrix adjust. Identities = 35/128 (27%), Positives = 54/128 (42%), Gaps = 4/128 (3%) Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFS--IKTQKTGTIITVELPDGFMKLLAMTPIGKETF 255 F LY+GLR + +H+ + + K G + V L D M ++ IGK Sbjct: 183 FALYTGLRQRNVLDMEWEHVDLELRHAYVPRTKNGEALAVPLNDVAMSIIT-KQIGKHPQ 241 Query: 256 FINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWK 314 F+ + + K ++ ++ +AG+ H +R AT AG HEL GWK Sbjct: 242 FVFSYRGKHIRYANTLAWRKALVRAGITDFRWHDLRHTWATWQRKAGTPTHELQHLGGWK 301 Query: 315 TVDQAETY 322 T E Y Sbjct: 302 TRAMVERY 309 >gi|329956554|ref|ZP_08297151.1| tyrosine recombinase XerD [Bacteroides clarus YIT 12056] gi|328524451|gb|EGF51521.1| tyrosine recombinase XerD [Bacteroides clarus YIT 12056] Length = 316 Score = 40.4 bits (93), Expect = 0.37, Method: Compositional matrix adjust. Identities = 49/212 (23%), Positives = 84/212 (39%), Gaps = 19/212 (8%) Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS-- 187 P S + L+ ++ F + V +Y+ +P +E PK + T E++ + S Sbjct: 78 PRSQARILSGIKSFFHFLVIADYLEADPSELLEGPKIGFKIPEVLTIEEIDRIISTVDME 137 Query: 188 --EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT---IITVELPDGFM 242 EG + R E L GLR S+ C + L IK + G+ ++ + P Sbjct: 138 KKEGQRNRAILETLYSCGLRVSELCNLKISDLYFEEGFIKVEGKGSKQRLVPIS-PRAIK 196 Query: 243 KL---LAMTPIGK------ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRK 291 ++ A +GK + F+ +++ K A KAG+ K S H R Sbjct: 197 EIKYWFADRNLGKIKKGYEDYVFLARWGNRISRIMVFHMIKELAEKAGITKNISPHTFRH 256 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYT 323 AT + GA + G +++ E YT Sbjct: 257 SFATHLLEGGANLRAIQCMLGHESIATTEIYT 288 >gi|320104524|ref|YP_004180115.1| integrase family protein [Isosphaera pallida ATCC 43644] gi|319751806|gb|ADV63566.1| integrase family protein [Isosphaera pallida ATCC 43644] Length = 442 Score = 40.4 bits (93), Expect = 0.37, Method: Compositional matrix adjust. Identities = 54/281 (19%), Positives = 103/281 (36%), Gaps = 45/281 (16%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR---SGVESRKHTPS 131 +SE+ A+ L + SR ES D R + +R S + + + P Sbjct: 159 VSEHTLRAYQEDLGLFSRYLAESQPGCASSDREPIDPRLADARRLRGYSSWLSRQGYAPG 218 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF----KSFWS 187 + + L S+R ++ + ++ +P ++ PK RP + +++ + S Sbjct: 219 TIARRLASLRTFYRHLRKHGHLEGDPTAAMRNPKPARRLPRPLRLDQIERLLEAVPTDQS 278 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDGFMKLL 245 G + R E L GLR + ++ L + N+ ++ G + Sbjct: 279 LGVRDRAILELLYGGGLRVGELVALDLEDLDLERNVVRVR--------------GKGRRE 324 Query: 246 AMTPIGKET--------------------FFINNDKQKMNATQFSIWFKAKATKAGVNKS 285 +TPIGK+ F+N +++ A F+ A G++ Sbjct: 325 RLTPIGKQAAEWVRRWLTHRRPDHGGEHALFLNRYGRRLTARSVDRLFETHARGLGLDAD 384 Query: 286 A--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 A H +R AT D GA + G + + + YT+ Sbjct: 385 ATPHSLRHSFATHLLDRGADLRSVQELLGHRRLTTTQIYTQ 425 >gi|326566125|gb|EGE16282.1| tyrosine recombinase XerD [Moraxella catarrhalis BC1] Length = 307 Score = 40.4 bits (93), Expect = 0.38, Method: Compositional matrix adjust. Identities = 59/273 (21%), Positives = 101/273 (36%), Gaps = 23/273 (8%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS---GVESRKHTPS 131 +SE+R + L++ +R ++ IR S D +R+ ++ K + Sbjct: 22 LSEFRAAMLARGLSIATRNAYSQDVRLCIRLS-DMPVNLWQPSDVRNHLMCLKDAKKSER 80 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS---- 187 S + L S+ F W + Y NPC S++ PK + +++++ Sbjct: 81 SIARALASLCQFFLWQIESGYREDNPCESIKTPKLGKTLPKTLSEQEVSSLLDAPDISSV 140 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM 247 G + + E L GLR S+ ++HL + G + + +P G L A+ Sbjct: 141 RGLRDKAMLEVLYACGLRVSELTSLSLEHLNLTAGWLSVTGKGNKMRL-IPLGEYALSAL 199 Query: 248 TP---------IGK---ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFS 293 IGK + F+ M F K A AG+N S H +R Sbjct: 200 NEYLAVRGSLLIGKKDCQAVFLTEQGGYMTRHNFWHLIKKYALMAGINTAISPHTLRHAF 259 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGA 326 AT + GA + G + + YT A Sbjct: 260 ATHLVNHGADLRSVQLLLGHSDLSTTQIYTHVA 292 >gi|325263946|ref|ZP_08130679.1| site-specific recombinase, phage integrase family [Clostridium sp. D5] gi|324030984|gb|EGB92266.1| site-specific recombinase, phage integrase family [Clostridium sp. D5] Length = 355 Score = 40.4 bits (93), Expect = 0.38, Method: Compositional matrix adjust. Identities = 37/194 (19%), Positives = 80/194 (41%), Gaps = 24/194 (12%) Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS-----Q 191 ++++R + + + + + NP L V+ PK + I +++ + G Q Sbjct: 119 MSALRSFYAYFFKHQVIEKNPTLLVDMPKLHDKAIIRLDTDEVASLLEYVEHGGDDLTGQ 178 Query: 192 PRLAFE-----------FLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELP 238 ++ FE LL +G+R S+ +Q + +NN + T+K G + V Sbjct: 179 RKVYFEKTKNRDLAILTLLLGTGIRVSECVGLDIQDVDFKNNGVKV-TRKGGNEMVVYFG 237 Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISA 298 + L M + + + +++ + + GV + V+K++ I+ Sbjct: 238 EEVENALKMY-----LYTTRKSTAPLPGHENALFLSTQRKRIGVQAVENMVKKYARQITP 292 Query: 299 DAGATAHELMATYG 312 + T H+L +TYG Sbjct: 293 NKKITPHKLRSTYG 306 >gi|163755025|ref|ZP_02162146.1| hypothetical protein KAOT1_03387 [Kordia algicida OT-1] gi|161325092|gb|EDP96420.1| hypothetical protein KAOT1_03387 [Kordia algicida OT-1] Length = 437 Score = 40.4 bits (93), Expect = 0.38, Method: Compositional matrix adjust. Identities = 42/194 (21%), Positives = 86/194 (44%), Gaps = 24/194 (12%) Query: 79 RKSAHWGSLAVNSRISFESYFDQIIR--KSGDFD---YRKITTKHIRSGVESRK------ 127 +K A+W + A +I+ +F + ++ K D D + + + I + S K Sbjct: 137 QKEAYWSARA---KITINGHFKRFVKWLKENDLDTIDIKALKRREIAVFLNSLKKYNKQR 193 Query: 128 ---HTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 P SA + TS+ +LF V + + NP ++++ K + + + +T + ++Q Sbjct: 194 ELTDEPVSAKTRNSYRTSLSLLFNQLVSDDILEYNPVKAIQKLKERPKTHKAYTDQQVKQ 253 Query: 182 FKSFWSEGSQPRLAF-EFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQKTGTIITVELP 238 + + + F +F+ Y+ LR + CR V+ L+N ++T KT V + Sbjct: 254 MRDYMDKNDPYLRKFTQFIAYAFLRNVEVCRLRVKDIDLKNRRLYVQT-KTEAQEVVPII 312 Query: 239 DGFMKLLAMTPIGK 252 D K++ + K Sbjct: 313 DNLAKVIKQMELHK 326 >gi|326204549|ref|ZP_08194406.1| integrase family protein [Clostridium papyrosolvens DSM 2782] gi|325985342|gb|EGD46181.1| integrase family protein [Clostridium papyrosolvens DSM 2782] Length = 297 Score = 40.4 bits (93), Expect = 0.39, Method: Compositional matrix adjust. Identities = 41/205 (20%), Positives = 83/205 (40%), Gaps = 21/205 (10%) Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKR--------KTEGIRPWTKEDMQQFKSFWSE 188 + S+R F + + QEY+ NP + PK+ K + I+ M+ + Sbjct: 78 INSLRSFFSFLISQEYIDKNPMAPITAPKKPDRLPIYLKPDEIKLLISMPMKHSR---DN 134 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSI-----KTQKTGTIITVELPDGF 241 + + E L+++GLR S+ Q++ +N ++ K Q+ I + D + Sbjct: 135 KLRDKCIIETLVFTGLRRSELLSLNWQNIDFGSNTITVLNGKGKKQRVVPITEPLISDLW 194 Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKFSATISA 298 L P+ FI+ + +++ T + F+ AG+ + H +R T+ Sbjct: 195 AYLQTRLPLHDNAVFISGNGTRLSTTPLNQLFRRYLKLAGLTGKGYTIHKLRHSYGTLLL 254 Query: 299 DAGATAHELMATYGWKTVDQAETYT 323 GA + + G ++ + YT Sbjct: 255 QNGADLISIQSLMGHNDLNTTKIYT 279 >gi|256424447|ref|YP_003125100.1| tyrosine recombinase XerD [Chitinophaga pinensis DSM 2588] gi|256039355|gb|ACU62899.1| tyrosine recombinase XerD [Chitinophaga pinensis DSM 2588] Length = 316 Score = 40.4 bits (93), Expect = 0.40, Method: Compositional matrix adjust. Identities = 43/213 (20%), Positives = 85/213 (39%), Gaps = 18/213 (8%) Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF----KS 184 T +S + ++ ++ +++ ++ V +P + +E PK K + + E+++Q K+ Sbjct: 86 TATSQARIISGIKAFYRYLALEDVVRQDPTILLEAPKTKRQLPDVLSFEEIEQIIGQIKA 145 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII-TVELPDGFMK 243 EG + R E + GLR S+ + L + I+ G V + +K Sbjct: 146 GTPEGQRNRAILETMYSCGLRVSEVTNLQISQLHFDAGFIRVVGKGDKERLVPIGSDAVK 205 Query: 244 LLAM--------TPIGK---ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290 + + P+ K + F+N + + K AG++K S H R Sbjct: 206 YINIYKDEVRVHVPVKKGQEDILFLNRRGSALTRVMIFLVIKELTAAAGIDKQVSPHTFR 265 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYT 323 AT + GA + G +++ E YT Sbjct: 266 HSFATHLVEGGADLRAVQEMLGHESITTTEIYT 298 >gi|256618627|ref|ZP_05475473.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200] gi|256598154|gb|EEU17330.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200] gi|315171724|gb|EFU15741.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX1342] Length = 371 Score = 40.4 bits (93), Expect = 0.41, Method: Compositional matrix adjust. Identities = 40/160 (25%), Positives = 67/160 (41%), Gaps = 24/160 (15%) Query: 68 PTTLKWLISEYRKSAHWGSLAVNSRISFE--------SY-------FDQIIR---KSGD- 108 TL+ + R S +G + + + FE SY FD IR K D Sbjct: 44 ENTLRATLLNQRISKQYGFIVLFELLLFEDRRRERKESYLATQQYMFDAHIREYFKQADI 103 Query: 109 --FDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166 DY+ I T R + + + + + + ++ L AVRQ+++ NPC +++ Sbjct: 104 STLDYQVIVT--YRDTLLKKGISNNYINKIMVLLKKLLDIAVRQKFLIENPCRLLKKLSV 161 Query: 167 KTEGIRPWTKEDMQQFKSFWSEGSQP-RLAFEFLLYSGLR 205 K + I WT D F + E + RL F ++G+R Sbjct: 162 KQKKISYWTLNDFLLFDQLFKEEEKVFRLFFHLAFFTGMR 201 >gi|28198560|ref|NP_778874.1| site-specific tyrosine recombinase XerD [Xylella fastidiosa Temecula1] gi|182681239|ref|YP_001829399.1| site-specific tyrosine recombinase XerD [Xylella fastidiosa M23] gi|73920482|sp|Q87DN0|XERD_XYLFT RecName: Full=Tyrosine recombinase xerD gi|28056644|gb|AAO28523.1| integrase/recombinase [Xylella fastidiosa Temecula1] gi|182631349|gb|ACB92125.1| tyrosine recombinase XerD [Xylella fastidiosa M23] gi|307579687|gb|ADN63656.1| site-specific tyrosine recombinase XerD [Xylella fastidiosa subsp. fastidiosa GB514] Length = 324 Score = 40.4 bits (93), Expect = 0.41, Method: Compositional matrix adjust. Identities = 53/223 (23%), Positives = 86/223 (38%), Gaps = 25/223 (11%) Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + ++P S + + +R F +AV + NP + P + T+ ++ + Sbjct: 84 QHYSPLSNARLRSVLRTFFSYAVECGWRNDNPSTLLAHPVLPHPLPKALTESQIEALLAA 143 Query: 186 WS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDG 240 S EG + R E + +GLR S+ V L ++ T K G V L + Sbjct: 144 PSIETPEGLRNRAMLELMYAAGLRVSELVTLPVAMLNQRQGVLRITGKGGKERLVPLGEE 203 Query: 241 FMK------------LLAMTPI-----GKETFFINNDKQKMNATQFSIWFKAKATKAGV- 282 L A PI G FIN + ++++ QF W K A G+ Sbjct: 204 SQHWLQRYLEQARPSLAADKPIPADSDGDVPLFINTNLKRLSRQQFWRWIKHYAALVGIA 263 Query: 283 -NK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 NK S H +R AT + GA L G +++ + YT Sbjct: 264 PNKVSPHVLRHSFATHLLNHGADLRALQMLLGHRSISTTQIYT 306 >gi|302878649|ref|YP_003847213.1| integrase family protein [Gallionella capsiferriformans ES-2] gi|302581438|gb|ADL55449.1| integrase family protein [Gallionella capsiferriformans ES-2] Length = 298 Score = 40.4 bits (93), Expect = 0.41, Method: Compositional matrix adjust. Identities = 59/255 (23%), Positives = 109/255 (42%), Gaps = 35/255 (13%) Query: 110 DYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV-ER---PK 165 D RK +H+R E RK + + + +++LF+W ++ ++INP ++ ER PK Sbjct: 52 DLRKFI-RHLR---EERKLKEITIKRRIACLKLLFRWVQQENMISINPFDNLNERIRLPK 107 Query: 166 R-----KTEGIRPWT-----KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQ 215 R +E I+ T + ++F+ F + +A + LL +G+R + + ++ Sbjct: 108 RLPRALGSEEIKLLTGAINLEATDKEFQEFVTG-----IATKLLLTTGIRVGELVKIDIE 162 Query: 216 HLQNNIFSIKTQKTGT------IITVELPDGFMKLLAMTPI-GKET--FFINNDKQKMNA 266 L S+K Q G + +L + L + ET FI Sbjct: 163 DLVLPDCSLKIQGKGNRQRLVYLFEPKLNQAIARYLTIRLTRATETKKLFITEAGIPFTT 222 Query: 267 TQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 + I A+KAG+ + + H +R +AT +AG + G +++ E YT Sbjct: 223 QKTRILLGDLASKAGIERRITPHMLRHTTATQLLEAGLDIRYVQKLLGHQSISTTEIYTH 282 Query: 325 GADR-IRLGIKNSRR 338 D +R +K + R Sbjct: 283 VTDHGLRTALKRTYR 297 >gi|218704094|ref|YP_002411613.1| Integrase from phage [Escherichia coli UMN026] gi|218431191|emb|CAR12067.1| Integrase from phage [Escherichia coli UMN026] gi|323976899|gb|EGB71987.1| bacteriophage lambda integrase domain-containing protein [Escherichia coli TW10509] Length = 356 Score = 40.4 bits (93), Expect = 0.42, Method: Compositional matrix adjust. Identities = 48/215 (22%), Positives = 83/215 (38%), Gaps = 11/215 (5%) Query: 25 FRKGHGRRIRLPYPHESTFIPAYMSALTGST--PKREYINSPRKKPTTLKWLISEYRKSA 82 F G RRI + + I A + +G P INS TL + Y K Sbjct: 35 FGLGRDRRIAI-----TEAIQANIELFSGHKHKPLTARINS--DNSVTLHSWLDRYEKIL 87 Query: 83 HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKHTPSSAIQFLTSM 140 + + I++ S I R D ITTK I + + + +SA +++ Sbjct: 88 ASRGIKQKTLINYMSKIKAIRRGLPDVPLEDITTKEIAAMLNGYIDEGKAASAKLIRSTL 147 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL 200 F+ A+ + ++ NP + K + R E ++ +++ S RLA E + Sbjct: 148 SDAFREAIAEGHITTNPVAATRAAKSEVRRSRLTADEYLKIYQAAESSPCWLRLAMELAV 207 Query: 201 YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235 +G R D C + + ++ KTG I + Sbjct: 208 VTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAI 242 >gi|212696810|ref|ZP_03304938.1| hypothetical protein ANHYDRO_01373 [Anaerococcus hydrogenalis DSM 7454] gi|212676100|gb|EEB35707.1| hypothetical protein ANHYDRO_01373 [Anaerococcus hydrogenalis DSM 7454] Length = 370 Score = 40.4 bits (93), Expect = 0.42, Method: Compositional matrix adjust. Identities = 29/112 (25%), Positives = 51/112 (45%), Gaps = 6/112 (5%) Query: 100 DQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCL 159 + I+ G+ KITT I+ + + + + LFK+A+ Q Y NPCL Sbjct: 93 NHILPYLGNKKLDKITTPVIQKLINKKSQEIADFKLINIYLNRLFKFAINQGYTDYNPCL 152 Query: 160 SVERP----KRKTEGIRPWTKEDMQQFKSFWSEGSQPR--LAFEFLLYSGLR 205 ++ P ++K + W KE++++F + L F+ Y+GLR Sbjct: 153 NIIYPTIRKEQKDMSLEYWDKEELKEFLYHAKKDLDQMWYLFFKIATYAGLR 204 >gi|268592909|ref|ZP_06127130.1| tyrosine recombinase XerC [Providencia rettgeri DSM 1131] gi|291311699|gb|EFE52152.1| tyrosine recombinase XerC [Providencia rettgeri DSM 1131] Length = 309 Score = 40.4 bits (93), Expect = 0.42, Method: Compositional matrix adjust. Identities = 31/123 (25%), Positives = 54/123 (43%), Gaps = 8/123 (6%) Query: 112 RKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171 R I K +SG+++ +S L+S+R F W V+Q + NP ++ PK K Sbjct: 66 RNIAAKSRKSGLQA-----ASMALRLSSLRSFFDWMVQQGELPANPAKAIHAPKSKKRLP 120 Query: 172 RPWTKEDMQQFKSFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228 + +++ Q + S + R E + +GLR S+ V+HL N + Sbjct: 121 KNMDVDEVSQLLNMDSGDPLVVRDRTMLEVMYGAGLRLSELVGLDVRHLDLNTGEVWVMG 180 Query: 229 TGT 231 G+ Sbjct: 181 KGS 183 >gi|189024593|ref|YP_001935361.1| Phage integrase [Brucella abortus S19] gi|189020165|gb|ACD72887.1| Phage integrase [Brucella abortus S19] Length = 116 Score = 40.4 bits (93), Expect = 0.42, Method: Compositional matrix adjust. Identities = 19/53 (35%), Positives = 29/53 (54%) Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339 HG+RK I A+ GA+ ++M T G + AE YT+ A++ RL R+ Sbjct: 57 HGLRKTLGKILAEGGASTRQIMDTLGHDDIAHAELYTREAEQARLATDGMSRV 109 >gi|194432422|ref|ZP_03064709.1| integrase [Shigella dysenteriae 1012] gi|194419309|gb|EDX35391.1| integrase [Shigella dysenteriae 1012] gi|332095959|gb|EGJ00966.1| integrase [Shigella dysenteriae 155-74] Length = 357 Score = 40.4 bits (93), Expect = 0.43, Method: Compositional matrix adjust. Identities = 33/147 (22%), Positives = 64/147 (43%), Gaps = 2/147 (1%) Query: 93 ISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQ 150 + + S I RK D I+TK + + + + + +SA +++ +F+ A+ + Sbjct: 98 LDYASKIRAIRRKLPDKPLTDISTKEVAAMLNTYVAEGKAASAKLIRSTLVDVFREAIAE 157 Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSC 210 +VA NP + K + R E ++ + + RLA + + +G R D C Sbjct: 158 GHVATNPVTATRTAKSEVRRSRLTANEYVEIYHAAEPLPIWLRLAMDLAVITGQRVGDLC 217 Query: 211 RAGVQHLQNNIFSIKTQKTGTIITVEL 237 R + +N I+ KTG + + L Sbjct: 218 RMKWSDINDNHLHIEQGKTGAKLAIPL 244 >gi|182416388|ref|YP_001821454.1| tyrosine recombinase XerD [Opitutus terrae PB90-1] gi|177843602|gb|ACB77854.1| tyrosine recombinase XerD [Opitutus terrae PB90-1] Length = 317 Score = 40.4 bits (93), Expect = 0.43, Method: Compositional matrix adjust. Identities = 58/280 (20%), Positives = 104/280 (37%), Gaps = 63/280 (22%) Query: 87 LAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRS---GVESRKHTPSSAIQFLTSM 140 LA N+ S+ DQ + G D+R +T + + S +T +S + L+++ Sbjct: 35 LAANTVASYRRDLDQAATHLAAQGARDWRAVTGEQAAGWIHSLSSASYTVASLARKLSAL 94 Query: 141 RVLFKWAVRQEYVA--INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRL 194 R L + VR+ + A LS + R+ G T+E++ + + + G + R Sbjct: 95 RSLAHFLVRERFRADDFTALLSGPKASRRIPGT--LTEEEIARLLAAPTGGDARALRDRA 152 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA------MT 248 E SGLR S+ +Q V+L GF+++ + Sbjct: 153 LLELFYSSGLRVSELAGLLLQQ------------------VDLEHGFLRVFGKGAKERVV 194 Query: 249 PIGKET-----------------------FFINNDKQKMNATQFSIWFKAKATKAGVNKS 285 PIG + F+N + ++ + K A +AG+ K+ Sbjct: 195 PIGGKAIEALATYLTAGRPHFVRSRTGSQLFLNKNGGPLSRVMLWMLVKKYAKRAGLTKN 254 Query: 286 A--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 HG+R AT GA + G ++ + YT Sbjct: 255 VKPHGLRHSFATHLLSGGADLRAIQEMLGHASISTTQIYT 294 >gi|225174860|ref|ZP_03728857.1| tyrosine recombinase XerD [Dethiobacter alkaliphilus AHT 1] gi|225169500|gb|EEG78297.1| tyrosine recombinase XerD [Dethiobacter alkaliphilus AHT 1] Length = 295 Score = 40.4 bits (93), Expect = 0.43, Method: Compositional matrix adjust. Identities = 43/207 (20%), Positives = 85/207 (41%), Gaps = 21/207 (10%) Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----QQFKSFWSEGSQP 192 + S+R + + ++ ++ NP +E PK + + R T ++M +Q G + Sbjct: 74 MASIRSFYNYLFQERHLVENPAAELESPKLEKKLPRVLTPQEMDLLLEQPDQTQVTGIRD 133 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT---IITVE----------LPD 239 + E + +G+R S+ + + + I+ G+ II + L + Sbjct: 134 KAMLEVIYATGIRVSELMSLDIGDVNLDAGFIRCLGKGSKERIIPLGSVAIRNVGRYLNE 193 Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS 297 G KL+ G+ + F+N ++ F K AT+AG+ K + H +R AT Sbjct: 194 GRPKLVRQA--GEASLFVNQHGNRLTRQGFWKILKKYATRAGITKEITPHTMRHSFATHL 251 Query: 298 ADAGATAHELMATYGWKTVDQAETYTK 324 + GA + G + + YT+ Sbjct: 252 LENGADLRSVQEMLGHADISTTQIYTQ 278 >gi|254282053|ref|ZP_04957021.1| tyrosine recombinase XerC [gamma proteobacterium NOR51-B] gi|219678256|gb|EED34605.1| tyrosine recombinase XerC [gamma proteobacterium NOR51-B] Length = 304 Score = 40.4 bits (93), Expect = 0.43, Method: Compositional matrix adjust. Identities = 56/249 (22%), Positives = 100/249 (40%), Gaps = 25/249 (10%) Query: 97 SYFDQIIRKSGDFDYRKITTKHIRS---GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYV 153 ++F++ R S R I +RS ++ + P++ + L+S+R FK + Sbjct: 35 NHFEEFCRASNCTSPRDIKESVVRSWAGQMQRQGKAPATIQRGLSSVRSYFKHLAARHAD 94 Query: 154 AINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL-----AFEFLLY-SGLRCS 207 NP + + P+R + P T E + + + ++ L A LLY SGLR + Sbjct: 95 ISNPAIGIRAPRRPRK--LPKTIE-ADRIGALFQRPAESTLEKRDQAIAELLYSSGLRLA 151 Query: 208 DSCRAGVQHL--QNNIFSI--KTQKTGTI-ITVELPDGFMKLLAMTPIGKET------FF 256 + ++ L + + ++ K KT T+ + V +A PIG+E F Sbjct: 152 ELVDVNLEDLDRREGVITVTGKGDKTRTVPVGVAALKALEAWIACRPIGQEVLSAKAPLF 211 Query: 257 INNDKQKMNATQFSIWFK--AKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWK 314 +N ++ K AKAT G N H +R AT ++ + G Sbjct: 212 VNQRGTRLGQRSVQDRLKKLAKATHLGQNLHPHMLRHSFATHLLESSGDLRAVQELLGHA 271 Query: 315 TVDQAETYT 323 + + YT Sbjct: 272 NISTTQIYT 280 >gi|329117566|ref|ZP_08246283.1| site-specific recombinase, phage integrase family [Streptococcus parauberis NCFD 2020] gi|326907971|gb|EGE54885.1| site-specific recombinase, phage integrase family [Streptococcus parauberis NCFD 2020] Length = 377 Score = 40.4 bits (93), Expect = 0.44, Method: Compositional matrix adjust. Identities = 32/143 (22%), Positives = 63/143 (44%), Gaps = 19/143 (13%) Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH--------- 128 +RK ++ + N ++YF Q+ D +K+T +HI ES K Sbjct: 78 HRKISYLTTQRNNYDRHIKTYFQQV-------DMKKLTYEHIYRFRESLKEKSTKQNSEE 130 Query: 129 --TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + ++ + + ++ +F +R E + NPC ++ + K + W E+ +FKS Sbjct: 131 KLSNNTINKIMILVKKMFDSGIRNELITKNPCQNLRKLPIKKPELNFWGIEEYLKFKSLI 190 Query: 187 SEGS-QPRLAFEFLLYSGLRCSD 208 +E Q L F ++G+R + Sbjct: 191 TEDEYQYNLFFTLAYFTGMRMGE 213 >gi|320161781|ref|YP_004175006.1| putative site-specific recombinase [Anaerolinea thermophila UNI-1] gi|319995635|dbj|BAJ64406.1| putative site-specific recombinase [Anaerolinea thermophila UNI-1] Length = 288 Score = 40.4 bits (93), Expect = 0.44, Method: Compositional matrix adjust. Identities = 31/132 (23%), Positives = 56/132 (42%), Gaps = 12/132 (9%) Query: 98 YFDQIIRKSGDFDYRKITTKHIRSG---VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVA 154 Y ++ GD + ITT + + + + P + F+ + LF+WAV + Y+A Sbjct: 35 YLRPLVAHLGDRETNSITTSDLINLFHLMRTDDREPYTLFNFIRGWKRLFRWAVDEGYIA 94 Query: 155 INPCLSVER---PKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY---SGLRCSD 208 +NP + R P++ GI+ ED+ + S+ P +L+ +G+R Sbjct: 95 MNPAKKLRRPPLPQKSPAGIQA---EDLSKMLDAASKTGTPERDLALVLFVADTGVRLGG 151 Query: 209 SCRAGVQHLQNN 220 V L N Sbjct: 152 VAGLTVDRLDIN 163 >gi|257870759|ref|ZP_05650412.1| phage integrase [Enterococcus gallinarum EG2] gi|257804923|gb|EEV33745.1| phage integrase [Enterococcus gallinarum EG2] Length = 383 Score = 40.4 bits (93), Expect = 0.44, Method: Compositional matrix adjust. Identities = 71/305 (23%), Positives = 123/305 (40%), Gaps = 60/305 (19%) Query: 63 SPRKKPTTLKWL----ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH 118 S +K+ T + L + ++RKS ++A N R E + ++ K G +IT Sbjct: 60 SKKKRTITFQELYDDWLEQHRKSVKSSTVATNRRF-IEGH---VLPKFGKLKLDQITVSF 115 Query: 119 IRSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP--W 174 + V K+ I+ T+ + + V E + NP P++K E +P + Sbjct: 116 CQKCVNEWHDKYKQYHYIRRATAQ--VMNYGVSMELMESNPMKKTILPRKKEEEKKPNFY 173 Query: 175 TKEDMQQFKSFWS--EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232 +K+++ +F +F + + F L +G+R S++ ++ L NIF+ KT G Sbjct: 174 SKDELHEFMTFVKTLDNYKYYAFFRLLAITGMRKSEALGLYIKDL--NIFN-KTLTIGKT 230 Query: 233 I--------------------TVELPDGFMKLLAM-TPIGKETFF-INNDKQKMNATQFS 270 I T+ L D +++L I KE +F + + K FS Sbjct: 231 IAIDEYDQVVLQTPKTKNSYRTISLDDETIRILQKWFSIQKEDYFKLGFNTSKAKQLMFS 290 Query: 271 ----------------IWFKAKATKAGVNK---SAHGVRKFSATISADAGATAHELMATY 311 W KA K G+ S HG R + ++ +AGAT +E+ Sbjct: 291 NMSNDLYYPQVINDWLDWIYDKAEKEGLTLKRISPHGFRHTACSLMFEAGATINEVQKRL 350 Query: 312 GWKTV 316 G K V Sbjct: 351 GHKDV 355 >gi|271966967|ref|YP_003341163.1| Site-specific recombinase XerD-like protein [Streptosporangium roseum DSM 43021] gi|270510142|gb|ACZ88420.1| Site-specific recombinase XerD-like protein [Streptosporangium roseum DSM 43021] Length = 373 Score = 40.4 bits (93), Expect = 0.44, Method: Compositional matrix adjust. Identities = 26/67 (38%), Positives = 39/67 (58%), Gaps = 5/67 (7%) Query: 111 YRK-ITTKHIRSGVESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166 YR I T R+G+ +R TP S+ + L+S+ L+ +A+R+ VA+NP VERP+ Sbjct: 122 YRDTIATGTARAGL-ARPGTPLAASTVARRLSSLSSLYGYALRRRIVAVNPADPVERPEV 180 Query: 167 KTEGIRP 173 T G P Sbjct: 181 STVGTTP 187 >gi|119715851|ref|YP_922816.1| phage integrase family protein [Nocardioides sp. JS614] gi|119536512|gb|ABL81129.1| phage integrase family protein [Nocardioides sp. JS614] Length = 368 Score = 40.4 bits (93), Expect = 0.44, Method: Compositional matrix adjust. Identities = 32/109 (29%), Positives = 49/109 (44%), Gaps = 6/109 (5%) Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 +P+S ++ T + +F+ A+R V NPC+ E PK + R T E+ + E Sbjct: 125 SPASVRKYHTMLHSVFERALRDRVVTFNPCVHTELPKVVKKKARTLTPEEYVAILTALPE 184 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL 237 Q RL E + +GLR + +HL IK Q T VE+ Sbjct: 185 --QHRLMVETAINTGLRWGELIALKPRHLD----LIKRQLTVEETVVEV 227 >gi|307591252|ref|YP_003900461.1| integrase family protein [Cyanothece sp. PCC 7822] gi|306986817|gb|ADN18692.1| integrase family protein [Cyanothece sp. PCC 7822] Length = 275 Score = 40.4 bits (93), Expect = 0.45, Method: Compositional matrix adjust. Identities = 44/200 (22%), Positives = 86/200 (43%), Gaps = 9/200 (4%) Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK-RKTEGIRPWTKEDMQQFKSFW 186 +TP + + ++ LF + V+ Y++ N ++ PK R + + D+++ Sbjct: 65 YTPPTVANKILCIKSLFSFCVKVGYLSFNIGALIKPPKTRDKRAEKILDQGDVKRLIEQA 124 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI--KTQKTGTIITVELPDGFMKL 244 + G + R+ + +GLR S++ L+ N ++ K K II +PD ++ Sbjct: 125 TPG-RDRVLLCLIYTTGLRVSEAVNLTWSDLKGNKLAVYGKGSKLRFII---VPDWLLEQ 180 Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGA 302 L P E F + + ++ K A KAG++ SAH +R A+ + + G Sbjct: 181 LQTLPKISEFIFATSTGKPIDRIFTHRMIKKCAEKAGIDPKTSAHWLRHSHASHAINNGC 240 Query: 303 TAHELMATYGWKTVDQAETY 322 L + G ++ E Y Sbjct: 241 NVRLLQESLGHSKLETTEKY 260 >gi|224368897|ref|YP_002603059.1| hypothetical protein HRM2_17930 [Desulfobacterium autotrophicum HRM2] gi|223691614|gb|ACN14897.1| hypothetical protein HRM2_17930 [Desulfobacterium autotrophicum HRM2] Length = 365 Score = 40.4 bits (93), Expect = 0.45, Method: Compositional matrix adjust. Identities = 56/260 (21%), Positives = 102/260 (39%), Gaps = 24/260 (9%) Query: 84 WGSLA----VNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---------KHTP 130 W SL ++ RI +E + ++ KIT H++ + + P Sbjct: 90 WASLNKRSWIDDRIRWELHISAHLK---GMKMDKITPSHVQDILNHMATKDTPKGGHYAP 146 Query: 131 SSAIQFLTSMRVLFKWAVRQE-YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 ++ Q L ++ +F W+++Q Y NPC SVE P P K ++ S Sbjct: 147 ATIKQVLVLIKRVFNWSMQQGLYQGGNPCKSVEAPMFDNRINNPLDKSGLRSLMSVLDTW 206 Query: 190 SQPR--LAFEFLLYSGLRCSD--SCRAGVQHLQNNIFSIKTQKTGTIITVELP--DGFMK 243 + R L +F LYSG R + S +N++ +++ T + LP + M Sbjct: 207 NNERAILVIKFALYSGKRKGEVLSLTWDSVDFENHLLTLQAMNTKSKKAQSLPLNNHCMT 266 Query: 244 LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAG-A 302 +L K + ++ F +K +AG++ H +R A+ A +G Sbjct: 267 ILERCRKLKVSDYVFPSTLGNYYNTFDETWKRIRKRAGISIRFHDLRHTYASYLASSGKV 326 Query: 303 TAHELMATYGWKTVDQAETY 322 + L G T++ + Y Sbjct: 327 DIYTLKELLGHSTIEMTQRY 346 >gi|89892756|ref|YP_516243.1| hypothetical protein DSY0010 [Desulfitobacterium hafniense Y51] gi|89332204|dbj|BAE81799.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 395 Score = 40.4 bits (93), Expect = 0.45, Method: Compositional matrix adjust. Identities = 27/100 (27%), Positives = 49/100 (49%), Gaps = 6/100 (6%) Query: 113 KITTKHIRSGVES---RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169 ++T +HI+ +S HTP++ I + +R + AV++E + NP V+RPK+ Sbjct: 111 EVTPQHIQDFHQSIFDEGHTPNTVIHYHAVLRRALQNAVKKEIIDSNPADRVDRPKKNVY 170 Query: 170 GIRPWTKEDMQQFKSFWSEGSQP-RLAFEFLLYSGLRCSD 208 + ++ E+M F P + + Y GLR S+ Sbjct: 171 HAQFYSAEEMMAL--FDEISDDPLEICVKLAAYYGLRRSE 208 >gi|251796343|ref|YP_003011074.1| tyrosine recombinase XerD [Paenibacillus sp. JDR-2] gi|247543969|gb|ACT00988.1| tyrosine recombinase XerD [Paenibacillus sp. JDR-2] Length = 296 Score = 40.4 bits (93), Expect = 0.45, Method: Compositional matrix adjust. Identities = 41/213 (19%), Positives = 86/213 (40%), Gaps = 20/213 (9%) Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQFKSFW 186 S+ + + S+R F + Y+ +NP + +E PK++ + + E+ ++ + Sbjct: 68 STVSRHIASIRAFFHYLAVNGYIQLNPAIYIESPKQEKKEPSVLSMENAGLLLETPQPVT 127 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-------------TII 233 + G + + E L +G+R S+ V + + + I+ +G + Sbjct: 128 AAGKRDKAMLELLYATGIRVSELISLNVDSVNSQLNIIRCVGSGMKERIIPFGRMAAAAL 187 Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRK 291 L +G +LL + + F+N +M F K A +AG+++ + H +R Sbjct: 188 DDYLQNGRAELLRQSE-DEPALFLNQLGTRMTRQGFWKMVKKYAKEAGISEEITPHTLRH 246 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTK 324 A + GA + G + + YTK Sbjct: 247 SFAAHLLENGADLRAVQELLGHADISTTQRYTK 279 >gi|91215199|ref|ZP_01252171.1| putative site-specific recombinase [Psychroflexus torquis ATCC 700755] gi|91186804|gb|EAS73175.1| putative site-specific recombinase [Psychroflexus torquis ATCC 700755] Length = 296 Score = 40.4 bits (93), Expect = 0.45, Method: Compositional matrix adjust. Identities = 48/208 (23%), Positives = 85/208 (40%), Gaps = 28/208 (13%) Query: 137 LTSMRVLFKWAVRQEYVAINPCL---SVERPKRKTEGIRPWTKEDMQQ-FKSFWSEGSQP 192 L++++ FK+ ++ + +A+NP + S++ PKR+ E E + F+ EG + Sbjct: 74 LSTLKTFFKFLLKIQVIAVNPMVQHKSLKLPKRQQEAFSVLELEKVSDYFEDVTFEGLRD 133 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ------KTGTIITVELPDGFMKLL- 245 L E L +G+R R + LQ + +K Q K + L D L+ Sbjct: 134 HLIIELLYATGMR-----RQELIDLQLSSLDLKQQQLKVRGKRNKERLIPLLDSISFLIE 188 Query: 246 -------AMTPIGKETFFINNDKQKMNATQFSI---WFKAKATKAGVNKSAHGVRKFSAT 295 + P G + F + K + + +F+ +TK + S H +R AT Sbjct: 189 RYLQERSVLLPQGSQLFVTSKGKAIYPNLVYRVVHSYFEKVSTKKKL--SPHLLRHAFAT 246 Query: 296 ISADAGATAHELMATYGWKTVDQAETYT 323 D GA + G ++ E YT Sbjct: 247 HLLDKGADISAIKDLLGHSSLASTEVYT 274 >gi|186686835|ref|YP_001870028.1| phage integrase family protein [Nostoc punctiforme PCC 73102] gi|186469187|gb|ACC84987.1| phage integrase family protein [Nostoc punctiforme PCC 73102] Length = 335 Score = 40.4 bits (93), Expect = 0.45, Method: Compositional matrix adjust. Identities = 53/246 (21%), Positives = 96/246 (39%), Gaps = 28/246 (11%) Query: 61 INSPRKKPTTLKWL-ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119 + R+ PT ++W+ + E+ +S +LA NSR +E + + S + Y ++ +H+ Sbjct: 26 LGETRRPPTDIRWVKVLEFLRS---NNLAPNSRKLYERELKRFLAWS-ELHYHELRPRHL 81 Query: 120 -------RSGVESRKHTP---SSAIQFLTSMRVLFKWAVRQ--EYVAINPCLSVERPKRK 167 R + + P SS + +++ FKW E ++ NP L ++ K Sbjct: 82 ALYKEYLRDEIRTDAGKPLSKSSINAGIAALKSFFKWMCYTYPEIISTNPTLGIKLEKVP 141 Query: 168 TEGIRPWTKEDMQQFKS---FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224 + T E+M+Q S E Q A +L GLR + + V + + Sbjct: 142 LPPAQSLTPEEMEQVWSALELLGETKQRDTALVHILSHGLRAGEVVQLNVGSFDGKLLFL 201 Query: 225 KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFS-IWFKAKATKAGVN 283 KT V L ++LA + + + T S + A+ G Sbjct: 202 PDTKTNEPRLVPLKKESREVLAQ-------YLLTRQQSGEVLTSLSPLMISHHASYKGER 254 Query: 284 KSAHGV 289 S HG+ Sbjct: 255 LSYHGI 260 >gi|317494831|ref|ZP_07953242.1| tyrosine recombinase XerC [Enterobacteriaceae bacterium 9_2_54FAA] gi|316917156|gb|EFV38504.1| tyrosine recombinase XerC [Enterobacteriaceae bacterium 9_2_54FAA] Length = 303 Score = 40.0 bits (92), Expect = 0.46, Method: Compositional matrix adjust. Identities = 32/138 (23%), Positives = 60/138 (43%), Gaps = 16/138 (11%) Query: 94 SFESYFDQ------IIRKSGDFDYRKITTKHIR--SGVESRKHTPSSAIQF-LTSMRVLF 144 + ESY Q I+ SG D+R++ + +R + R +++I L+S+R Sbjct: 29 TIESYHHQLMAIIEIVSASGLRDWRQLDSNQVRMITARSKRMGLEAASIALRLSSLRSFL 88 Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP-----RLAFEFL 199 W V Q +++NP + PK+ + +D+ + + S P R E + Sbjct: 89 DWQVSQGVMSVNPAKGISAPKQARHLPKNLDVDDVNRLLEI--DSSDPLAVRDRTMLEVM 146 Query: 200 LYSGLRCSDSCRAGVQHL 217 +GLR S+ +H+ Sbjct: 147 YGAGLRLSELVGLDCRHM 164 >gi|167580360|ref|ZP_02373234.1| putative phage integrase [Burkholderia thailandensis TXDOH] Length = 394 Score = 40.0 bits (92), Expect = 0.46, Method: Compositional matrix adjust. Identities = 44/194 (22%), Positives = 79/194 (40%), Gaps = 13/194 (6%) Query: 53 GSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYR 112 G+ P E +K +++ LI++YR+ +LA +++ S+ D++ R G R Sbjct: 67 GTNPAVEKRKERARKDWSVRQLIADYRERV-LVTLANSTQRSYGRNLDRVERGMGSLSVR 125 Query: 113 KITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172 + + + +E K ++ +FK AV + + NPC V G R Sbjct: 126 VVGAADVVAEIERTKLGWVETFTLWCVLKAIFKHAVGKRLIDANPCAGV--ALEAIIGKR 183 Query: 173 PWTKEDMQQFKSFWSEGSQPRL------AFEFLLYSGLRCSD---SCRAGVQHLQNNIFS 223 P ++ + S + A L +G+R S+ S RA + HL + Sbjct: 184 PPVRQRLMLTHEELSVLMNANMRDVNLYAVRIALATGVRISELYTSLRANL-HLDEARWH 242 Query: 224 IKTQKTGTIITVEL 237 I KTG + + L Sbjct: 243 IPASKTGPAMDIPL 256 >gi|126741189|ref|ZP_01756869.1| putative integrase for prophage CP-933U [Roseobacter sp. SK209-2-6] gi|126717712|gb|EBA14434.1| putative integrase for prophage CP-933U [Roseobacter sp. SK209-2-6] Length = 313 Score = 40.0 bits (92), Expect = 0.46, Method: Compositional matrix adjust. Identities = 54/264 (20%), Positives = 104/264 (39%), Gaps = 28/264 (10%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD-----FDYRKITTKHIRSGVESRKH 128 +I Y+ SAH+ LA ++ +E Y D + + G F+ ++ ++ IR+ + H Sbjct: 16 VIRRYKNSAHFKILAPRTKDDYEKYLDSLEEEFGPDPIMMFEEKEALSE-IRTWKDQWSH 74 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEY-VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 +P + + L WA ++ + + + + R + W E++Q K + Sbjct: 75 SPRQYDYATSIVTRLLNWAKAEDTSIVTHFHMDIARIYKSKRAHLVWLPEEIQALKDVAN 134 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-----IFSIKTQKTGTIITVELPDGFM 242 E + R+ GL D +H+Q +F K KTG + + + Sbjct: 135 E-RETRIVV-AASEGGLTPQDIGLLKREHVQRTPKGRRLF-FKRTKTGNPVAIPVTPALA 191 Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFS-----------IWFKAKATKAGVNKSAH--GV 289 +L+ TP G+E ++ + ++ + S K K + H + Sbjct: 192 ELIDNTPKGQEYLVVSLEGHRLQPERASGIVRDLRNRVNALAKDDPAKYSIRDELHLYDM 251 Query: 290 RKFSATISADAGATAHELMATYGW 313 R +AT AG + E+ T GW Sbjct: 252 RGTAATELLRAGCSLEEIAITMGW 275 >gi|17986820|ref|NP_539454.1| integrase/recombinase [Brucella melitensis bv. 1 str. 16M] gi|17982454|gb|AAL51718.1| integrase/recombinase [Brucella melitensis bv. 1 str. 16M] Length = 116 Score = 40.0 bits (92), Expect = 0.46, Method: Compositional matrix adjust. Identities = 19/53 (35%), Positives = 29/53 (54%) Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339 HG+RK I A+ GA+ ++M T G + AE YT+ A++ RL R+ Sbjct: 57 HGLRKTLGKILAEGGASTRQIMDTLGHDDIAHAELYTREAEQARLATDGMSRV 109 >gi|255305195|ref|ZP_05349367.1| phage integrase family protein [Clostridium difficile ATCC 43255] Length = 351 Score = 40.0 bits (92), Expect = 0.46, Method: Compositional matrix adjust. Identities = 28/100 (28%), Positives = 48/100 (48%), Gaps = 5/100 (5%) Query: 113 KITTKHIRSGVESRKHTPSSAIQFLT---SMRVLFKWAVRQEYVAINPC-LSVERPKRKT 168 +IT KHIR + S T + + +AV+ + NP L+ K+ Sbjct: 103 EITAKHIRKWQNELLQSDYSQTYIKTINNQLVAILNYAVKYYNLPSNPAHLAGSIGKKNA 162 Query: 169 EGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSD 208 + ++ WT ++ ++F F +PRLAFE L ++GLR + Sbjct: 163 DEMQFWTLDEFKKFMEF-ENKPEPRLAFEILFWAGLRLGE 201 >gi|288928808|ref|ZP_06422654.1| integrase/recombinase XerD [Prevotella sp. oral taxon 317 str. F0108] gi|288329792|gb|EFC68377.1| integrase/recombinase XerD [Prevotella sp. oral taxon 317 str. F0108] Length = 304 Score = 40.0 bits (92), Expect = 0.47, Method: Compositional matrix adjust. Identities = 48/221 (21%), Positives = 87/221 (39%), Gaps = 19/221 (8%) Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 + + ++ P S + L+ +R FK+ + ++ +P + P + + ++ Sbjct: 64 ASLHDQRIMPRSQARILSGVRSFFKFLLLDGFIDADPTELLVSPHVRNALPDVLSTAEVD 123 Query: 181 QFK-----SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT---I 232 + + S W EG + R E L GLR S+ + +L ++ G + Sbjct: 124 RLEASIDLSKW-EGQRNRAIVEVLFSCGLRVSELVNLKLSNLYVEEKFVRVTGKGDKERL 182 Query: 233 ITV------ELPDGFMKLLAM--TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284 + + EL F AM P ++ F+N + T I K +A AG+ K Sbjct: 183 VPISSRALDELNAWFADRNAMRIKPGEEDYVFLNRRGAHLTRTMILIMIKRQAVAAGITK 242 Query: 285 --SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 S H +R AT + GA + A G + + E YT Sbjct: 243 TISPHTLRHSFATALLEGGADLIAIQAMMGHEDIATTEIYT 283 >gi|315282996|ref|ZP_07871279.1| tyrosine recombinase XerD [Listeria marthii FSL S4-120] gi|313613367|gb|EFR87228.1| tyrosine recombinase XerD [Listeria marthii FSL S4-120] Length = 297 Score = 40.0 bits (92), Expect = 0.47, Method: Compositional matrix adjust. Identities = 46/213 (21%), Positives = 88/213 (41%), Gaps = 24/213 (11%) Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191 S +++ S+R F + + ++ +P + +E PK+ + +D+++ S S+ S Sbjct: 70 SVARYIASLRSFFHYLMHDGKMSHDPMIQIETPKQAQSLPKVLNLDDVEKLLS-SSDTST 128 Query: 192 P-----RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-------------TII 233 P + E L +GLR ++ R + L ++ I+T G T++ Sbjct: 129 PLGLRDQAMMEILYATGLRVTELVRLKMDDLHLHMGFIQTIGKGDKERIIPLGKTATTVL 188 Query: 234 TVELPDGFMKLLAMTPIGKETF-FINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290 L + KL P + F F+N+ Q + F K A ++G+ K + H +R Sbjct: 189 EQYLEEARPKL--RRPKYRNDFVFLNHHGQGLTRQGFWKILKGIAKESGIEKPITPHTLR 246 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYT 323 AT + GA + G + + YT Sbjct: 247 HSFATHLLENGADLRSVQELLGHADISTTQIYT 279 >gi|82777635|ref|YP_403984.1| integrase [Shigella dysenteriae Sd197] gi|81241783|gb|ABB62493.1| integrase [Shigella dysenteriae Sd197] Length = 351 Score = 40.0 bits (92), Expect = 0.48, Method: Compositional matrix adjust. Identities = 33/147 (22%), Positives = 64/147 (43%), Gaps = 2/147 (1%) Query: 93 ISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQ 150 + + S I RK D I+TK + + + + + +SA +++ +F+ A+ + Sbjct: 92 LDYASKIRAIRRKLPDKPLTDISTKEVAAMLNTYVAEGKAASAKLIRSTLVDVFREAIAE 151 Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSC 210 +VA NP + K + R E ++ + + RLA + + +G R D C Sbjct: 152 GHVATNPVTATRTAKSEVRRSRLTANEYVEIYHAAEPLPIWLRLAMDLAVITGQRVGDLC 211 Query: 211 RAGVQHLQNNIFSIKTQKTGTIITVEL 237 R + +N I+ KTG + + L Sbjct: 212 RMKWSDINDNHLHIEQGKTGAKLAIPL 238 >gi|148559335|ref|YP_001259359.1| phage integrase family site specific recombinase [Brucella ovis ATCC 25840] gi|148370592|gb|ABQ60571.1| site-specific recombinase, phage integrase family [Brucella ovis ATCC 25840] Length = 125 Score = 40.0 bits (92), Expect = 0.49, Method: Compositional matrix adjust. Identities = 19/53 (35%), Positives = 29/53 (54%) Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339 HG+RK I A+ GA+ ++M T G + AE YT+ A++ RL R+ Sbjct: 66 HGLRKTLGKILAEGGASTRQIMDTLGHDDIAHAELYTREAEQARLATDGMSRV 118 >gi|254831444|ref|ZP_05236099.1| hypothetical protein Lmon1_08823 [Listeria monocytogenes 10403S] gi|284802400|ref|YP_003414265.1| hypothetical protein LM5578_2156 [Listeria monocytogenes 08-5578] gi|284995542|ref|YP_003417310.1| hypothetical protein LM5923_2107 [Listeria monocytogenes 08-5923] gi|284057962|gb|ADB68903.1| hypothetical protein LM5578_2156 [Listeria monocytogenes 08-5578] gi|284061009|gb|ADB71948.1| hypothetical protein LM5923_2107 [Listeria monocytogenes 08-5923] Length = 297 Score = 40.0 bits (92), Expect = 0.50, Method: Compositional matrix adjust. Identities = 46/216 (21%), Positives = 89/216 (41%), Gaps = 24/216 (11%) Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 +P S +++ S+R F + + ++ +P + +E PK+ + +D+++ S S+ Sbjct: 67 SPRSVARYIASLRSFFHYLMHDGKMSHDPMIQIETPKQAKGLPKVLNLDDVEKLLS-SSD 125 Query: 189 GSQP-----RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG------------- 230 S P + E L +GLR ++ + L ++ I+T G Sbjct: 126 TSTPLGLRDQAMMEILYATGLRVTELVSLKMDDLHLHMGFIQTIGKGDKERIIPLGKTAT 185 Query: 231 TIITVELPDGFMKLLAMTPIGKETF-FINNDKQKMNATQFSIWFKAKATKAGVNK--SAH 287 T++ L + KL P + F F+N+ Q + F K A ++G+ K + H Sbjct: 186 TVLEKYLEEARPKL--RRPKYRNDFVFLNHHGQGLTRQGFWKILKGIAKESGIEKPITPH 243 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 +R AT + GA + G + + YT Sbjct: 244 TLRHSFATHLLENGADLRSVQELLGHADISTTQIYT 279 >gi|217963893|ref|YP_002349571.1| tyrosine recombinase XerD [Listeria monocytogenes HCC23] gi|290892115|ref|ZP_06555111.1| integrase/recombinase XerD [Listeria monocytogenes FSL J2-071] gi|217333163|gb|ACK38957.1| tyrosine recombinase XerD [Listeria monocytogenes HCC23] gi|290558238|gb|EFD91756.1| integrase/recombinase XerD [Listeria monocytogenes FSL J2-071] gi|307571537|emb|CAR84716.1| integrase/recombinase [Listeria monocytogenes L99] Length = 297 Score = 40.0 bits (92), Expect = 0.50, Method: Compositional matrix adjust. Identities = 46/216 (21%), Positives = 89/216 (41%), Gaps = 24/216 (11%) Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 +P S +++ S+R F + + ++ +P + +E PK+ + +D+++ S S+ Sbjct: 67 SPRSVARYIASLRSFFHYLMHDGKMSHDPMIQIETPKQAQGLPKVLNLDDVEKLLS-SSD 125 Query: 189 GSQP-----RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG------------- 230 S P + E L +GLR ++ + L ++ I+T G Sbjct: 126 TSTPLGLRDQAMMEILYATGLRVTELVSLKMDDLHLHMGFIQTIGKGDKERIIPLGKTAT 185 Query: 231 TIITVELPDGFMKLLAMTPIGKETF-FINNDKQKMNATQFSIWFKAKATKAGVNK--SAH 287 T++ L + KL P + F F+N+ Q + F K A ++G+ K + H Sbjct: 186 TVLEKYLEEARPKL--RRPKYRNDFVFLNHHGQGLTRQGFWKILKGIAKESGIEKPITPH 243 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 +R AT + GA + G + + YT Sbjct: 244 TLRHSFATHLLENGADLRSVQELLGHADISTTQIYT 279 >gi|119869100|ref|YP_939052.1| phage integrase family protein [Mycobacterium sp. KMS] gi|119695189|gb|ABL92262.1| phage integrase family protein [Mycobacterium sp. KMS] Length = 407 Score = 40.0 bits (92), Expect = 0.50, Method: Compositional matrix adjust. Identities = 51/213 (23%), Positives = 86/213 (40%), Gaps = 25/213 (11%) Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 E R +PS IQ + + ++AV+ +++ NP +E P++ R T E +Q+ Sbjct: 149 EGRGLSPSRVIQAHQVVSQVLRYAVKAKHLPANPADGIELPRKPEVEQRYLTHEQLQRLA 208 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSC--RAGVQHL-------QNNIFSIKTQ------- 227 + R L Y GLR ++ R G +L + ++ ++ Q Sbjct: 209 ---VASGRFRTFVLVLGYCGLRFGEAAALRVGDVNLSSRRIRIRRSVTAVTGQGLVEGPT 265 Query: 228 KTGTIITVELPDGFMKLLAMTPIG----KETFFINNDKQKMNATQFSIWFKAKATKAGVN 283 K + TV +P F+ L T +G E F + + + F A A GV Sbjct: 266 KNHSARTVPVPK-FLAPLIETEVGGRVDDELLFPSRRGGYLTEGEVRWVFDAAAVAVGVT 324 Query: 284 K-SAHGVRKFSATISADAGATAHELMATYGWKT 315 + H +R A+++ AGA L G KT Sbjct: 325 GLTPHELRHTCASLAIAAGANVKVLQTLLGHKT 357 >gi|218263976|ref|ZP_03477907.1| hypothetical protein PRABACTJOHN_03597 [Parabacteroides johnsonii DSM 18315] gi|218222387|gb|EEC95037.1| hypothetical protein PRABACTJOHN_03597 [Parabacteroides johnsonii DSM 18315] Length = 382 Score = 40.0 bits (92), Expect = 0.51, Method: Compositional matrix adjust. Identities = 55/248 (22%), Positives = 106/248 (42%), Gaps = 21/248 (8%) Query: 107 GDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166 G D+ + T ++ +S ++ +P + + +++ + AV++ + NP S+ER R Sbjct: 139 GFIDFIEHTYRNTKSPDNPKEMSPHTLHLYQSTLVRMLNAAVKEGVLDRNPFYSLERKDR 198 Query: 167 --KTEGIRPW-TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN--- 220 K + + + TKE++ F + + AF F ++GLR SD + ++ Sbjct: 199 IGKQQAEKEYLTKEELMAFAEAPTVNETTKRAFLFCCFTGLRYSDVSALTWRDIRQGDNG 258 Query: 221 -IFSIKT-QKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI---WFKA 275 + S+K QKTG + + L + LL K + ++ + T S K Sbjct: 259 WMVSVKAMQKTGKQVVIPLNQSAISLLPDRNGCKPS------QKVFDMTCLSSCNKCLKK 312 Query: 276 KATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 A AG+ K S H R A ++ AG + + G +++ + Y + + Sbjct: 313 IAAAAGIEKKISYHTSRHTFAVLALAAGGDIYTVGKLLGHTSINSTQVYADAV--METKV 370 Query: 334 KNSRRISS 341 + RISS Sbjct: 371 EAISRISS 378 >gi|317405888|gb|EFV86170.1| integrase/recombinase [Achromobacter xylosoxidans C54] Length = 327 Score = 40.0 bits (92), Expect = 0.52, Method: Compositional matrix adjust. Identities = 51/212 (24%), Positives = 85/212 (40%), Gaps = 20/212 (9%) Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSV---ERPKRKTEGIRPWTKEDMQQFKSFWS 187 ++A + L ++R + WA+R+ A +PCL++ ++P R + + + + + Sbjct: 99 TTANRRLAALRRFYAWALREHRAAHDPCLTLVAAKQPPRLPKTLSEQQVDALLRAPDLNE 158 Query: 188 -EGSQPRLAFEFLLYSGLRCSD--SCRAGVQHLQNNIFSIKTQKTGTIITVELP------ 238 G + R E L +GLR S+ RA L + + K G V L Sbjct: 159 PRGLRDRAMLEMLYATGLRVSELVGVRALDVSLNEGVVRVVLGKGGKDRLVPLGAEAAHW 218 Query: 239 -DGFMKL----LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRK 291 D +MK LA + + FI + M+ F K A AGV+ S H +R Sbjct: 219 IDQYMKTARPELAAGRV-SDALFITGRAEAMSRQAFWQLVKKYAVLAGVHAPLSPHVLRH 277 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYT 323 AT + GA + G + + YT Sbjct: 278 AFATHLLNHGADLRVVQMLLGHADISTTQIYT 309 >gi|300907025|ref|ZP_07124694.1| phage integrase, SAM-like domain protein [Escherichia coli MS 84-1] gi|301304025|ref|ZP_07210142.1| phage integrase, SAM-like domain protein [Escherichia coli MS 124-1] gi|331682197|ref|ZP_08382819.1| integrase [Escherichia coli H299] gi|300401246|gb|EFJ84784.1| phage integrase, SAM-like domain protein [Escherichia coli MS 84-1] gi|300840632|gb|EFK68392.1| phage integrase, SAM-like domain protein [Escherichia coli MS 124-1] gi|315257687|gb|EFU37655.1| phage integrase, SAM-like domain protein [Escherichia coli MS 85-1] gi|331080621|gb|EGI51797.1| integrase [Escherichia coli H299] Length = 356 Score = 40.0 bits (92), Expect = 0.52, Method: Compositional matrix adjust. Identities = 62/295 (21%), Positives = 110/295 (37%), Gaps = 35/295 (11%) Query: 25 FRKGHGRRIRLPYPHESTFIPAYMSALTGST--PKREYINSPRKKPTTLKWLISEYRKSA 82 F G RRI + + I A + +G P INS TL + Y K Sbjct: 35 FGLGRDRRIAI-----TEAIQANIELFSGHKHKPLTARINS--DNSVTLHSWLDRYEKIL 87 Query: 83 HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKHTPSSAIQFLTSM 140 + + I++ S I R D ITTK I + + + +SA +++ Sbjct: 88 ASRGIKQKTLINYMSKIKAIRRGLPDAPLEDITTKEIAAMLNGYIDEGKAASAKLIRSTL 147 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL 200 F+ A+ + ++ NP + K + R E ++ +++ S RLA E + Sbjct: 148 SDAFREAIAEGHITTNPVAATRAAKSEVRRSRLTADEYLKIYQAAESSPCWLRLAMELAV 207 Query: 201 YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV--------------ELPDGFMKLLA 246 +G R D C + + ++ KTG I + E D K+L Sbjct: 208 VTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAIPTTLHVDALGISMKETLDKCKKIL- 266 Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA-----HGVRKFSATI 296 G ET + ++ +++ S +F +G++ H +R SA + Sbjct: 267 ----GGETIIASTRREPLSSGTVSRYFMRARKASGLSFEGDPPTFHELRSLSARL 317 >gi|329963640|ref|ZP_08301114.1| site-specific recombinase, phage integrase family [Bacteroides fluxus YIT 12057] gi|328528050|gb|EGF55031.1| site-specific recombinase, phage integrase family [Bacteroides fluxus YIT 12057] Length = 379 Score = 40.0 bits (92), Expect = 0.53, Method: Compositional matrix adjust. Identities = 50/220 (22%), Positives = 85/220 (38%), Gaps = 16/220 (7%) Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPC---LSVERPKRKTEGIRPWTKEDMQ 180 E +K ++ + + +R AV +EY+A NP S E+PKR+ T ++++ Sbjct: 154 EEKKLHANTQLHYFKMLRYCLNHAVSEEYIACNPIDKMKSDEKPKRRKADREYLTIDELR 213 Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-----NNIFSIKTQKTGTIITV 235 S + AF F + GLR D + + N +I QKT I++ Sbjct: 214 YLVRTPFYNSLLKKAFLFSCFCGLRHCDIVALEWKDIHYDTNGNASINIVQQKTHEAISL 273 Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ--FSIWFKAKATKAGVNKSA--HGVRK 291 L +K L ++T I + + W A +AG+ K H R Sbjct: 274 PLSPEAVKYLPNREKAQDTDKIFKGLISLGRSNEILDRW----AKQAGILKHVTFHVARH 329 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 AT+ GA + + G + + Y K D ++ Sbjct: 330 THATMMLTLGADLYTISKLLGHTNIQTTQIYAKLVDESKM 369 >gi|291286568|ref|YP_003503384.1| integrase family protein [Denitrovibrio acetiphilus DSM 12809] gi|290883728|gb|ADD67428.1| integrase family protein [Denitrovibrio acetiphilus DSM 12809] Length = 390 Score = 40.0 bits (92), Expect = 0.54, Method: Compositional matrix adjust. Identities = 46/246 (18%), Positives = 94/246 (38%), Gaps = 22/246 (8%) Query: 93 ISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEY 152 I++ S + ++ + I HIR+ +++ + +P + + + + AV + Sbjct: 110 ITYTSSINNLLATFENMSICDIKPAHIRTYIKNSEVSPKTLKNHVGVLSSILSAAVEDDL 169 Query: 153 VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA--FEFLLYSGLRCSDSC 210 + NPC SV+ P + + P + E++ + W + P + F ++G+R + Sbjct: 170 IPKNPCTSVKLPHISSVEVDPLSLEEITMILN-WMKSHHPNMLAFFAVAFFTGMRTGEIM 228 Query: 211 RAGVQHLQNNIFSIKTQKTGTI----------------ITVELPDGFMKLLAMTPIGKET 254 + N +I +T T I EL + T + E Sbjct: 229 GLQWGDIDFNSHTITISRTITAGKLKHRTKTADSRTVDILTELDEYLSYHKQFTYMKSEW 288 Query: 255 FFINNDKQKMNATQFSI--WFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATY 311 F+ + + N T I ++K G+ ++ + R A + D G + L Sbjct: 289 LFLTYENKPFNKTDNIIKTYWKPCLKALGIKYRTLYQTRHTFACLMLDVGENINWLKKML 348 Query: 312 GWKTVD 317 G KT+D Sbjct: 349 GHKTLD 354 >gi|16803994|ref|NP_465479.1| hypothetical protein lmo1955 [Listeria monocytogenes EGD-e] gi|47097098|ref|ZP_00234668.1| integrase/recombinase XerD [Listeria monocytogenes str. 1/2a F6854] gi|224498595|ref|ZP_03666944.1| hypothetical protein LmonF1_02414 [Listeria monocytogenes Finland 1988] gi|224501245|ref|ZP_03669552.1| hypothetical protein LmonFR_01770 [Listeria monocytogenes FSL R2-561] gi|254827160|ref|ZP_05231847.1| integrase/recombinase XerD [Listeria monocytogenes FSL N3-165] gi|254899348|ref|ZP_05259272.1| hypothetical protein LmonJ_06029 [Listeria monocytogenes J0161] gi|254912513|ref|ZP_05262525.1| tyrosine recombinase XerD [Listeria monocytogenes J2818] gi|254936840|ref|ZP_05268537.1| integrase/recombinase XerD [Listeria monocytogenes F6900] gi|255028942|ref|ZP_05300893.1| hypothetical protein LmonL_06711 [Listeria monocytogenes LO28] gi|34222939|sp|Q8Y5V0|XERD_LISMO RecName: Full=Tyrosine recombinase xerD gi|16411408|emb|CAD00033.1| lmo1955 [Listeria monocytogenes EGD-e] gi|47014543|gb|EAL05506.1| integrase/recombinase XerD [Listeria monocytogenes str. 1/2a F6854] gi|258599542|gb|EEW12867.1| integrase/recombinase XerD [Listeria monocytogenes FSL N3-165] gi|258609436|gb|EEW22044.1| integrase/recombinase XerD [Listeria monocytogenes F6900] gi|293590498|gb|EFF98832.1| tyrosine recombinase XerD [Listeria monocytogenes J2818] Length = 297 Score = 40.0 bits (92), Expect = 0.54, Method: Compositional matrix adjust. Identities = 46/216 (21%), Positives = 89/216 (41%), Gaps = 24/216 (11%) Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 +P S +++ S+R F + + ++ +P + +E PK+ + +D+++ S S+ Sbjct: 67 SPRSVARYIASLRSFFHYLMHDGKMSHDPMIQIETPKQAQGLPKVLNLDDVEKLLS-SSD 125 Query: 189 GSQP-----RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG------------- 230 S P + E L +GLR ++ + L ++ I+T G Sbjct: 126 TSTPLGLRDQAMMEILYATGLRVTELVSLKMDDLHLHMGFIQTIGKGDKERIIPLGKTAT 185 Query: 231 TIITVELPDGFMKLLAMTPIGKETF-FINNDKQKMNATQFSIWFKAKATKAGVNK--SAH 287 T++ L + KL P + F F+N+ Q + F K A ++G+ K + H Sbjct: 186 TVLEKYLEEARPKL--RRPKYRNDFVFLNHHGQGLTRQGFWKILKGIAKESGIEKPITPH 243 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 +R AT + GA + G + + YT Sbjct: 244 TLRHSFATHLLENGADLRSVQELLGHADISTTQIYT 279 >gi|301308338|ref|ZP_07214292.1| site-specific recombinase, phage integrase family [Bacteroides sp. 20_3] gi|300833808|gb|EFK64424.1| site-specific recombinase, phage integrase family [Bacteroides sp. 20_3] Length = 380 Score = 40.0 bits (92), Expect = 0.54, Method: Compositional matrix adjust. Identities = 55/217 (25%), Positives = 89/217 (41%), Gaps = 27/217 (12%) Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR-PWTKED---MQQFKS 184 +P +A + T++R AVR+ +A NP +E TE I+ P +K D +++ K Sbjct: 161 SPKTAHSYYTTLRTALNEAVRENLIASNPWYRLE----MTEKIKVPESKRDFLTIEEIKR 216 Query: 185 FWSE---GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQKTGTIITVEL 237 + Q R A+ F + GLR SD + + L + S+ KT + + L Sbjct: 217 MMATPFFNEQVRQAYLFSCFCGLRISDIRKLRWRDLSMSGGQWRASVVMTKTIHPVYIPL 276 Query: 238 PDGFMKLLA----MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRK 291 +K L TP G + N+ + K A KAGV K+ H R Sbjct: 277 SSQAVKWLPERGDCTPDGLVFGGLPNE------GNLCVNLKNWAEKAGVKKNVTFHTARH 330 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 A + GA + + G ++V + Y K D+ Sbjct: 331 SCAVLLLTLGADIYTVSKILGHRSVRSTQVYAKIVDK 367 >gi|320179493|gb|EFW54448.1| Phage integrase [Shigella boydii ATCC 9905] Length = 300 Score = 40.0 bits (92), Expect = 0.55, Method: Compositional matrix adjust. Identities = 33/147 (22%), Positives = 64/147 (43%), Gaps = 2/147 (1%) Query: 93 ISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQ 150 + + S I RK D I+TK + + + + + +SA +++ +F+ A+ + Sbjct: 98 LDYASKIRAIRRKLPDKPLTDISTKEVAAMLNTYVAEGKAASAKLIRSTLVDVFREAIAE 157 Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSC 210 +VA NP + K + R E ++ + + RLA + + +G R D C Sbjct: 158 GHVATNPVTATRTAKSEVRRSRLTANEYVEIYHAAEPLPIWLRLAMDLAVITGQRVGDLC 217 Query: 211 RAGVQHLQNNIFSIKTQKTGTIITVEL 237 R + +N I+ KTG + + L Sbjct: 218 RMKWSDINDNHLHIEQGKTGAKLAIPL 244 >gi|237727927|ref|ZP_04558408.1| site-specific tyrosine recombinase XerC [Citrobacter sp. 30_2] gi|226910376|gb|EEH96294.1| site-specific tyrosine recombinase XerC [Citrobacter sp. 30_2] Length = 300 Score = 40.0 bits (92), Expect = 0.55, Method: Compositional matrix adjust. Identities = 45/215 (20%), Positives = 86/215 (40%), Gaps = 23/215 (10%) Query: 93 ISFESYFDQIIRKSGDF---DYRKITTKHIRS-GVESRKHT--PSSAIQFLTSMRVLFKW 146 ++++ D II +G+ +++ +RS V SR+ P+S L+++R F W Sbjct: 29 LNYQRQLDAIIALAGETGLQSWQQCDAAMVRSFAVRSRRKGLGPASLALRLSALRSFFDW 88 Query: 147 AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP-----RLAFEFLLY 201 V Q + NP SV PK + +D+ + + + P R E + Sbjct: 89 LVNQGELKANPAKSVSAPKAPRHLPKNIDVDDVNRLLDI--DLNDPLAVRDRAMLEVMYG 146 Query: 202 SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG---------FMKLLAMTPIGK 252 +GLR S+ ++HL + + G+ LP G ++ L + Sbjct: 147 AGLRLSELVGLDIKHLDLDTGEVWVMGKGS-KERRLPIGRNAVAWIEHWLDLRGLFGSDD 205 Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAH 287 + F++ ++++A F K G+N H Sbjct: 206 DALFLSKLGKRISARNVQKRFAEWGIKQGLNSHVH 240 >gi|310778330|ref|YP_003966663.1| integrase family protein [Ilyobacter polytropus DSM 2926] gi|309747653|gb|ADO82315.1| integrase family protein [Ilyobacter polytropus DSM 2926] Length = 297 Score = 40.0 bits (92), Expect = 0.56, Method: Compositional matrix adjust. Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 4/81 (4%) Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQP 192 ++S+R FK+ Q Y+ NP + + P K + TKE++ + + + G + Sbjct: 80 ISSLRTFFKYLKNQGYIEKNPTILLTGPAFKADLPEILTKEEIDRIREVIDIEKTNGIRD 139 Query: 193 RLAFEFLLYSGLRCSDSCRAG 213 RL E L SG+R S+ G Sbjct: 140 RLIVELLYSSGIRTSELLSLG 160 >gi|268608336|ref|ZP_06142063.1| hypothetical protein RflaF_02413 [Ruminococcus flavefaciens FD-1] Length = 396 Score = 40.0 bits (92), Expect = 0.56, Method: Compositional matrix adjust. Identities = 35/135 (25%), Positives = 60/135 (44%), Gaps = 18/135 (13%) Query: 107 GDFDYRKITTKHIRSGVES-----------RKHTPSSAIQFLTSMRVLFKWAVRQEYVAI 155 G KIT + I++ V S + P + L+ + +F +AV+ V Sbjct: 105 GHMRMDKITPRQIQAFVNSLSREGANERTGKPLAPKTIRHNLSFVSDVFSYAVKMGVVND 164 Query: 156 NPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-SEGSQPRLAFEFLLYSGLRCSDSCRAGV 214 NPC V PK + +T E +Q+F S +E + R F +++SG R + G+ Sbjct: 165 NPCTKVTLPKNNQAEKKIYTPEQVQRFLSLLNNEPLKYRTFFNLMIFSGFRRGEML--GL 222 Query: 215 Q----HLQNNIFSIK 225 + +NNI S++ Sbjct: 223 EWKDVDFENNIISVR 237 >gi|169834527|ref|YP_001695426.1| phage integrase family site specific recombinase [Streptococcus pneumoniae Hungary19A-6] gi|168997029|gb|ACA37641.1| site-specific recombinase, phage integrase family [Streptococcus pneumoniae Hungary19A-6] Length = 377 Score = 40.0 bits (92), Expect = 0.56, Method: Compositional matrix adjust. Identities = 33/140 (23%), Positives = 65/140 (46%), Gaps = 9/140 (6%) Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITT--KHIRSGVESRKHTPSSAI- 134 +RK+++ + N + YF ++ G Y I +H+R V P S Sbjct: 78 HRKASYINTQDNNYNKHIKDYF-SMVDNVGKLTYEDIYQFREHLRQKVAKNSDKPLSTNT 136 Query: 135 --QFLTSMRVLFKWAVRQEYVAINPCLSVER-PKRKTEGIRPWTKEDMQQFKS-FWSEGS 190 + + ++ +F +R+ Y NP +++ P KT+ ++ WT ++ Q F + F +E Sbjct: 137 INKIMILLKKIFDVGLRKGYYTSNPANLIKKLPIEKTK-MQFWTVKEFQHFLTLFETEEY 195 Query: 191 QPRLAFEFLLYSGLRCSDSC 210 +L F L ++GLR ++ Sbjct: 196 NIKLLFTVLFFTGLRLGEAL 215 >gi|257881842|ref|ZP_05661495.1| integrase [Enterococcus faecium 1,231,502] gi|294619302|ref|ZP_06698771.1| integrase [Enterococcus faecium E1679] gi|257817500|gb|EEV44828.1| integrase [Enterococcus faecium 1,231,502] gi|291594462|gb|EFF25870.1| integrase [Enterococcus faecium E1679] Length = 382 Score = 40.0 bits (92), Expect = 0.57, Method: Compositional matrix adjust. Identities = 41/147 (27%), Positives = 68/147 (46%), Gaps = 16/147 (10%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE--SRKHTP 130 WL S Y+K+ S + ++I F + I K G+ KI T + + V S K T Sbjct: 76 WLES-YKKTVKESSYS-RTKIIFNKH---IYPKFGNIKLSKINTAYCQKVVNDWSEKGTS 130 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLS--VERPKRKTE-GIRPWTKEDMQQFKSFWS 187 F+ M +FK+A+ + NP L+ + +P+ KTE ++ +TKE ++ F + S Sbjct: 131 KQYPLFINYMNKVFKYAINIGLTSDNPTLNLLIPKPQIKTEKKLKLYTKEQLELFLNEVS 190 Query: 188 EGSQPRLA------FEFLLYSGLRCSD 208 + P F L +SG R + Sbjct: 191 QEQNPYFKNRDYTLFRLLAFSGCRIGE 217 >gi|312134835|ref|YP_004002173.1| integrase family protein [Caldicellulosiruptor owensensis OL] gi|311774886|gb|ADQ04373.1| integrase family protein [Caldicellulosiruptor owensensis OL] Length = 376 Score = 40.0 bits (92), Expect = 0.58, Method: Compositional matrix adjust. Identities = 32/140 (22%), Positives = 70/140 (50%), Gaps = 14/140 (10%) Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFL 199 +R ++ +AV+ +YV NP +VE PK+ + ++ W +++++ + + + P A L Sbjct: 137 LREIYNFAVKWQYVTKNPFDNVETPKKDRKEMQVWNLDEIRKAEEVFRDT--PIFAHVML 194 Query: 200 -LYSGLRCSDSCRAGVQ----HLQNNIFSIKTQK---TGTIITVELP--DGFMKLLAMTP 249 LY+G+R + C G++ +N + +++ G ++ E P D ++++A+T Sbjct: 195 ALYTGMRLGEVC--GLKWDDIDFKNKVCAVRRVAEYINGEVVIKEKPKTDKSLRIVALTD 252 Query: 250 IGKETFFINNDKQKMNATQF 269 E +Q N +F Sbjct: 253 NLVEILKEEKKRQLENKLKF 272 >gi|29830251|ref|NP_824885.1| phage integrase [Streptomyces avermitilis MA-4680] gi|29607362|dbj|BAC71420.1| putative tyrosine-family recombinase/integrase [Streptomyces avermitilis MA-4680] Length = 393 Score = 40.0 bits (92), Expect = 0.58, Method: Compositional matrix adjust. Identities = 55/228 (24%), Positives = 94/228 (41%), Gaps = 16/228 (7%) Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 HT ++A + +R AVR+E + N VE P+ K IRPW+ E+ F + Sbjct: 132 HTAATAKESHRVLRTALTAAVREELITRNVASLVEPPRVKQREIRPWSLEETLSF--LEA 189 Query: 188 EGSQPRL-AFEFLLYSGLRCSD--SCRAGVQHLQNNIFSIKTQ---KTGTIITVELPDGF 241 S P AF + GLR + R L N + ++ Q + GT+ + Sbjct: 190 ARSDPLYAAFVLAIAMGLRRGELGGLRWSDVDLDNRVVHVRQQTQRRRGTLYDDDPKSRR 249 Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSI-WFKAK---ATKAGVNKSAHGVRKFSATIS 297 ++++ M + + +Q+ + + W +A AT+ G V + ++ Sbjct: 250 IRVVPMPALCIAPLRWHRLRQRETFARTGVAWCEAGYVFATRNGRPVEPRNVYRSFTRVA 309 Query: 298 ADAGATAHELM-ATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344 ADAG L A +G T+ A A R+ + I +IS +D Sbjct: 310 ADAGLRVVRLHDARHGCATLLTAAGV---APRVIMEILGHSQISITMD 354 >gi|225864449|ref|YP_002749827.1| DNA integration/recombination/invertion protein [Bacillus cereus 03BB102] gi|225788669|gb|ACO28886.1| site-specific recombinase, phage integrase family [Bacillus cereus 03BB102] Length = 292 Score = 40.0 bits (92), Expect = 0.59, Method: Compositional matrix adjust. Identities = 27/120 (22%), Positives = 57/120 (47%), Gaps = 5/120 (4%) Query: 93 ISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVL---FKWAV 148 + + ++ +Q II G K+ HI+ ++ + L R+L AV Sbjct: 9 VGYRAFINQHIIPSIGMVALHKLNVMHIQKCYKTAIDRGIANNSVLLMHRILKSALNLAV 68 Query: 149 RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSD 208 +Q ++ NP E PK++ I+ WT+E++++F S+ S+ + + + +G+R + Sbjct: 69 KQNIISRNPADFAEIPKKERTSIQTWTEEEVKKF-LLHSQESRYHIGYLLAITTGMRMGE 127 >gi|309785081|ref|ZP_07679714.1| integrase [Shigella dysenteriae 1617] gi|308927451|gb|EFP72925.1| integrase [Shigella dysenteriae 1617] Length = 339 Score = 39.7 bits (91), Expect = 0.60, Method: Compositional matrix adjust. Identities = 33/147 (22%), Positives = 64/147 (43%), Gaps = 2/147 (1%) Query: 93 ISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQ 150 + + S I RK D I+TK + + + + + +SA +++ +F+ A+ + Sbjct: 80 LDYASKIRAIRRKLPDKPLTDISTKEVAAMLNTYVAEGKAASAKLIRSTLVDVFREAIAE 139 Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSC 210 +VA NP + K + R E ++ + + RLA + + +G R D C Sbjct: 140 GHVATNPVTATRTAKSEVRRSRLTANEYVEIYHAAEPLPIWLRLAMDLAVITGQRVGDLC 199 Query: 211 RAGVQHLQNNIFSIKTQKTGTIITVEL 237 R + +N I+ KTG + + L Sbjct: 200 RMKWSDINDNHLHIEQGKTGAKLAIPL 226 >gi|25011358|ref|NP_735753.1| hypothetical protein gbs1314 [Streptococcus agalactiae NEM316] gi|76787522|ref|YP_329938.1| phage integrase family site specific recombinase [Streptococcus agalactiae A909] gi|77407140|ref|ZP_00784133.1| site-specific recombinase, phage integrase family [Streptococcus agalactiae H36B] gi|24412896|emb|CAD46973.1| Unknown [Streptococcus agalactiae NEM316] gi|76562579|gb|ABA45163.1| site-specific recombinase, phage integrase family [Streptococcus agalactiae A909] gi|77174250|gb|EAO77126.1| site-specific recombinase, phage integrase family [Streptococcus agalactiae H36B] Length = 393 Score = 39.7 bits (91), Expect = 0.60, Method: Compositional matrix adjust. Identities = 40/183 (21%), Positives = 76/183 (41%), Gaps = 27/183 (14%) Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 K++P+ A + +A R Y+ PC S++ PK K + WT ED+++ + + Sbjct: 134 KYSPNYAKGVWIRFKHCIGYAERLGYIDEFPCKSLDNPKGKRPDTKFWTLEDLKKVVATF 193 Query: 187 S----EGSQPRLAFEFLLYSGLRCSDS----------------CRAGVQHLQNNIFSIK- 225 E A ++GLR S+ ++ +++ N +F+ K Sbjct: 194 DLRDYEERHRFTAIWLYFFTGLRVSEGLSLIWSDIDFDKKLLHVQSTLEYEGNGVFTRKN 253 Query: 226 -TQKTGTIITVELPDGFMKLLA-----MTPIGKETFFINNDKQKMNATQFSIWFKAKATK 279 T+ + I +EL D + +L G +++ + + +N S K +A K Sbjct: 254 PTKTSAGIRWIELDDETLNVLLRWRSIQVENGDDSYVLARFGKPLNKCTLSRILKRQAKK 313 Query: 280 AGV 282 AGV Sbjct: 314 AGV 316 >gi|188994249|ref|YP_001928501.1| putative integrase/recombinase XerD [Porphyromonas gingivalis ATCC 33277] gi|188593929|dbj|BAG32904.1| putative integrase/recombinase XerD [Porphyromonas gingivalis ATCC 33277] Length = 308 Score = 39.7 bits (91), Expect = 0.60, Method: Compositional matrix adjust. Identities = 50/210 (23%), Positives = 88/210 (41%), Gaps = 19/210 (9%) Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---SE 188 S + ++ ++ F++ V +EY+ +P +E P+ T E++ + ++ Sbjct: 70 SIARIISGVKSFFRFLVLEEYIEADPTELLEGPRIGVHLPTVLTIEEVDRLIGAIDPAAQ 129 Query: 189 GSQPRLAFEFLLYS-GLRCSDSCRAGVQHLQNNIFSIKTQKTG----------TIITVEL 237 G+Q A +LYS GLR S+ +L N ++ G T IT EL Sbjct: 130 GAQRNRAILEILYSCGLRVSELTSLKFSNLFLNESFLRIDGKGRKQRLVPMSETAIT-EL 188 Query: 238 PDGFMKLLAMTPI-GKETF-FINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFS 293 TP+ G+E + F++N + ++ + K A +AG+ KS H R Sbjct: 189 KRYLSDPERPTPVLGQEEYVFLSNRGKAISRIMVFVMIKKLAEEAGITKSISPHTFRHSF 248 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYT 323 AT + GA + G + + E YT Sbjct: 249 ATHLLEGGANLQAIQLMLGHENIATTEIYT 278 >gi|118477881|ref|YP_895032.1| DNA integration/recombination/invertion protein [Bacillus thuringiensis str. Al Hakam] gi|229184697|ref|ZP_04311897.1| DNA integration/recombination/invertion protein [Bacillus cereus BGSC 6E1] gi|118417106|gb|ABK85525.1| DNA integration/recombination/invertion protein [Bacillus thuringiensis str. Al Hakam] gi|228598801|gb|EEK56421.1| DNA integration/recombination/invertion protein [Bacillus cereus BGSC 6E1] Length = 292 Score = 39.7 bits (91), Expect = 0.60, Method: Compositional matrix adjust. Identities = 27/120 (22%), Positives = 57/120 (47%), Gaps = 5/120 (4%) Query: 93 ISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVL---FKWAV 148 + + ++ +Q II G K+ HI+ ++ + L R+L AV Sbjct: 9 VGYRAFINQHIIPSIGMVALHKLNVMHIQKCYKTAIDRGIANNSVLLMHRILKSALNLAV 68 Query: 149 RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSD 208 +Q ++ NP E PK++ I+ WT+E++++F S+ S+ + + + +G+R + Sbjct: 69 KQNIISRNPADFAEIPKKERTSIQTWTEEEVKKF-LLHSQESRYHIGYLLAITTGMRMGE 127 >gi|253572132|ref|ZP_04849536.1| integrase [Bacteroides sp. 1_1_6] gi|251838312|gb|EES66399.1| integrase [Bacteroides sp. 1_1_6] Length = 396 Score = 39.7 bits (91), Expect = 0.61, Method: Compositional matrix adjust. Identities = 72/314 (22%), Positives = 119/314 (37%), Gaps = 55/314 (17%) Query: 33 IRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSR 92 I P + ++F+ + + S+ K S R+ + L+ EY+K + L Sbjct: 98 IEKPENNGNSFLTFFKEEVNNSSLKE----STRQNHLSTLELLQEYKKDIVFTDLT---- 149 Query: 93 ISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEY 152 F S FD ++ G H+ + + KH ++ A+ +EY Sbjct: 150 FEFVSSFDNYLQSKG---------YHLNTIAKHMKH-----------LKRYVNVAINKEY 189 Query: 153 VAINPCLSVERPKRKTEGIRP-WTKEDMQQFKSFWSEGSQPRL-----AFEFLLYSGLRC 206 + I + + EG + E++ + + EG +L AF F Y+GLR Sbjct: 190 MDIQKYAFRKYKIKSIEGSHTHLSPEELNKMEEVNLEGKFTKLQKSKDAFLFCCYAGLRY 249 Query: 207 SDSCR---AGVQHLQNNIFSI-KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ 262 SD A + L + I K+ KTG I V LP L + GK + N K Sbjct: 250 SDFINLTAANIVELHQETWLIYKSVKTG--IDVRLP------LYLLFEGKGLRVLENYKD 301 Query: 263 KMNA-------TQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGW 313 +N + + A A A ++K S H R +AT+ +GA + G Sbjct: 302 DLNGFFRLKDNSNVNKDLNALAKLAEIDKRISFHTARHTNATLLIYSGANITTVQKLLGH 361 Query: 314 KTVDQAETYTKGAD 327 K+V + Y D Sbjct: 362 KSVKTTQVYANIMD 375 >gi|124268171|ref|YP_001022175.1| putative site specific integrase [Methylibium petroleiphilum PM1] gi|124260946|gb|ABM95940.1| putative site specific integrase [Methylibium petroleiphilum PM1] Length = 318 Score = 39.7 bits (91), Expect = 0.61, Method: Compositional matrix adjust. Identities = 30/126 (23%), Positives = 51/126 (40%), Gaps = 11/126 (8%) Query: 43 FIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFE---SYF 99 F P+ + L ++ R K TL++ + R N+R ++ +F Sbjct: 2 FAPSQLELLPAASVPALLAPDARAKARTLEFFTAHIRNP--------NTRKAYARAGQHF 53 Query: 100 DQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCL 159 + G D R++ H+ VE S Q L ++R LF W V + + INP Sbjct: 54 ADWCARFGIGDVRQVQPVHVALYVEQLDLAAPSVKQRLAALRALFDWLVVGQVMPINPAA 113 Query: 160 SVERPK 165 +V P+ Sbjct: 114 AVRGPR 119 >gi|86137451|ref|ZP_01056028.1| site-specific recombinase, phage integrase family protein [Roseobacter sp. MED193] gi|85825786|gb|EAQ45984.1| site-specific recombinase, phage integrase family protein [Roseobacter sp. MED193] Length = 367 Score = 39.7 bits (91), Expect = 0.62, Method: Compositional matrix adjust. Identities = 37/153 (24%), Positives = 59/153 (38%), Gaps = 17/153 (11%) Query: 111 YRKITTKHIRSGVESRKHTPSSAIQFLTS-----MRVLFKWAVRQEYVAINPCLSVERPK 165 Y K+T I G E R H + + S +R +F WAV + + NP ++ Sbjct: 127 YLKLTDVSIHHGRELRNHVSKKSTELRGSAVIRYIRPMFSWAVDESLIDENPWAGLKATA 186 Query: 166 RKTEGIRPWTKEDMQQFKSFWSEGSQPRLA--FEFLLYSGLRCSDSCRAGVQHLQNNIFS 223 T R T E+ Q+ W + L F FL+ S R + +Q N+++ Sbjct: 187 IATPRDRVLTNEEWQK---VWGATFKDNLGAYFRFLMLSAQRKDNVASMKWDEIQGNLWT 243 Query: 224 IKTQK-------TGTIITVELPDGFMKLLAMTP 249 I +K + V L M++L P Sbjct: 244 IPAEKFKATKKESAKAHEVPLTPALMEILENQP 276 >gi|256854437|ref|ZP_05559801.1| predicted protein [Enterococcus faecalis T8] gi|256709997|gb|EEU25041.1| predicted protein [Enterococcus faecalis T8] gi|315029064|gb|EFT40996.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX4000] Length = 302 Score = 39.7 bits (91), Expect = 0.62, Method: Compositional matrix adjust. Identities = 31/135 (22%), Positives = 60/135 (44%), Gaps = 9/135 (6%) Query: 105 KSGDFDYRKITTKHIRSGV--ESRKHTPSSAIQFLTS-MRVLFKWAVRQEYVAINPCLSV 161 KS + + +I K I+S + K +S I S ++ LF + + ++Y+ NP + + Sbjct: 59 KSINVEPSQIEKKQIKSWIIDMQEKEMQASTINVSVSRLKKLFDYMLIEKYIDYNPFVDI 118 Query: 162 ERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA------FEFLLYSGLRCSDSCRAGVQ 215 ER K + + I P +++Q + + +A ++ GLR S+ C + Sbjct: 119 ERLKEQRKVIYPLNDYEIKQMLTVAKKHPYKHIAQRNVVILMLMIECGLRISEVCEIRDE 178 Query: 216 HLQNNIFSIKTQKTG 230 + NN I+ K Sbjct: 179 DIMNNQIIIRKSKNN 193 >gi|260588143|ref|ZP_05854056.1| integrase/recombinase XerD [Blautia hansenii DSM 20583] gi|260541670|gb|EEX22239.1| integrase/recombinase XerD [Blautia hansenii DSM 20583] Length = 294 Score = 39.7 bits (91), Expect = 0.62, Method: Compositional matrix adjust. Identities = 52/264 (19%), Positives = 108/264 (40%), Gaps = 23/264 (8%) Query: 90 NSRISFE---SYFDQIIRKSGDFDYRKITTKHIRSGV---ESRKHTPSSAIQFLTSMRVL 143 N+ +S+E +Q +++ G ++ +++ + S + E + SS + + S+R Sbjct: 21 NTEVSYERDLKKLEQFLKQEGILEWHQVSAVLLNSYIMYLERKNFAASSISRSVASIRAF 80 Query: 144 FKWAVRQEYVAINPCLSVERPK--RKTEGIRPWTKED--MQQFKSFWSEGSQPRLAFEFL 199 F++ ++E NP ++ PK +K GI + D + Q K ++G + R E L Sbjct: 81 FQYLCQRECWRENPAEGLKAPKIEKKAPGILTVDEVDLLLSQPKENTAKGVRDRAMLELL 140 Query: 200 LYSGLRCSDSCRAGVQ--HLQNNIFSIKTQKTGTII--------TVELPDGFMKLLAMTP 249 +G+R S+ ++ +L+ + + +I VE + ++ + Sbjct: 141 YATGIRVSELIHLTLRDVNLKLGYLTCSQSERERVIPFGATAKTAVEAYMAWARVELLGE 200 Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHEL 307 E F+N + M+ F K A AG+ + + H +R A GA + Sbjct: 201 NSSEWLFVNCSGKSMSRQGFWKILKGYAVSAGIQQDITPHTLRHSFAAHLVQNGADLKSV 260 Query: 308 MATYGWKTVDQAETYTK-GADRIR 330 G + + Y ++IR Sbjct: 261 QEMMGHSDISTTQIYMNMNVNKIR 284 >gi|255690817|ref|ZP_05414492.1| tyrosine type site-specific recombinase [Bacteroides finegoldii DSM 17565] gi|260623621|gb|EEX46492.1| tyrosine type site-specific recombinase [Bacteroides finegoldii DSM 17565] Length = 385 Score = 39.7 bits (91), Expect = 0.62, Method: Compositional matrix adjust. Identities = 63/281 (22%), Positives = 117/281 (41%), Gaps = 25/281 (8%) Query: 59 EYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK--SGDFDYRKITT 116 +YI R+ P+ + YR + + + R +I +K +G D+ + T Sbjct: 92 DYIEGIRRSPSYSQSTYHNYRSTVNIIKAYLQYRRRPRYLMSKIDKKFIAGLLDFMQNTY 151 Query: 117 KHIRSGVESRKHTPSSAIQFLTSMRV-LFKWAVRQEYVAINPCLSVERPKR--KTEGIRP 173 ++ +S ++ K + ++ V + AV + + NP ++ + +R K + R Sbjct: 152 RNTKSP-DNPKEMSQCTLHLHQAILVRMLNAAVNEGIMNSNPFYALGKHERIAKQQAERD 210 Query: 174 W-TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKT-Q 227 + TK+++ + R AF F ++GLR SD C + ++ + SI+ + Sbjct: 211 YLTKDELLALAEAPTTNETTRRAFLFCCFTGLRYSDVCTLAWRDIKQVDSGLVVSIRAMR 270 Query: 228 KTGTIITVELPDGFMKLL----AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV- 282 KTG +T+ L +K L P G+ F D ++A + K A AG+ Sbjct: 271 KTGKQVTIPLNQSALKWLPDRNGCKP-GQRVF----DMTSLSACDRCL--KKSAVAAGIE 323 Query: 283 -NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 N S H R AT+S AG + + G + + Y Sbjct: 324 KNVSYHTSRHTFATLSLAAGGDLYTVGKLLGHTNILSTQVY 364 >gi|37524549|ref|NP_927893.1| site-specific tyrosine recombinase XerC [Photorhabdus luminescens subsp. laumondii TTO1] gi|37525103|ref|NP_928447.1| site-specific tyrosine recombinase XerC [Photorhabdus luminescens subsp. laumondii TTO1] gi|37525111|ref|NP_928455.1| site-specific tyrosine recombinase XerC [Photorhabdus luminescens subsp. laumondii TTO1] gi|36783973|emb|CAE12838.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] gi|36784529|emb|CAE13429.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] gi|36784537|emb|CAE13437.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 376 Score = 39.7 bits (91), Expect = 0.62, Method: Compositional matrix adjust. Identities = 49/215 (22%), Positives = 86/215 (40%), Gaps = 34/215 (15%) Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR-PWTKEDMQQFKSFWS----EGSQ 191 L ++V FKW +Q + NP +E P+ + R + ++++ S +G++ Sbjct: 109 LQPLQVWFKWLTKQNLILANPAADIELPREEKRLPRYILSIDEIEHILSLPDPNTLQGAR 168 Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVE------LPDGFMKL 244 R E L +G+R S++ R +I+SI ++KT TI + LP G L Sbjct: 169 DRALMELLWSTGIRRSEAARL-------DIYSIDGSRKTVTIRQGKGNKDRVLPLGERAL 221 Query: 245 -------------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289 L +TP + F + + + AG+ K + H Sbjct: 222 NWLQFYQQQIRPQLLVTPDIQSLFVAMDGLDGLQPNGITNAVSGYIRAAGIEKKGACHLF 281 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 R AT + GA + A G +V+ + YT+ Sbjct: 282 RHAMATQMLENGADLRWIQAMLGHASVESTQVYTQ 316 >gi|300870084|ref|YP_003784955.1| tyrosine recombinase XerD [Brachyspira pilosicoli 95/1000] gi|300687783|gb|ADK30454.1| tyrosine recombinase, XerD [Brachyspira pilosicoli 95/1000] Length = 288 Score = 39.7 bits (91), Expect = 0.63, Method: Compositional matrix adjust. Identities = 48/200 (24%), Positives = 83/200 (41%), Gaps = 21/200 (10%) Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRLAFEF 198 L+K+ V + Y++ NP ++E + K T E++ S +E G + + FE Sbjct: 66 LYKFLVMENYISKNPTDNLEVIRLKRVLPESLTTEEVDDLLSVHNEKTDKGLRDKAIFEL 125 Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-IITVELPDGFMKLL--------AMTP 249 + SGLR S+ C ++ + + +K G V + D + +L + Sbjct: 126 MYSSGLRVSEICSLKIEDIFFDEKYLKICGKGKRERIVPINDKALDILKRYIQTSRVVMV 185 Query: 250 IGKET--FFINNDKQKMNATQFSIW--FKAKATKAGVNKSA--HGVRKFSATISADAGAT 303 GK+T F+N K+ ++ IW K K+G+ K+ H +R AT GA Sbjct: 186 KGKKTSELFLNFRGDKI--SRVGIWKIVKEAMKKSGIEKNVYPHTLRHSFATHLIQHGAD 243 Query: 304 AHELMATYGWKTVDQAETYT 323 + G + E YT Sbjct: 244 LRSVQRMLGHSDITTTEIYT 263 >gi|300919957|ref|ZP_07136417.1| phage integrase, SAM-like domain protein [Escherichia coli MS 115-1] gi|300413014|gb|EFJ96324.1| phage integrase, SAM-like domain protein [Escherichia coli MS 115-1] Length = 356 Score = 39.7 bits (91), Expect = 0.63, Method: Compositional matrix adjust. Identities = 48/215 (22%), Positives = 83/215 (38%), Gaps = 11/215 (5%) Query: 25 FRKGHGRRIRLPYPHESTFIPAYMSALTGST--PKREYINSPRKKPTTLKWLISEYRKSA 82 F G RRI + + I A + +G P INS TL + Y K Sbjct: 35 FGLGRDRRIAI-----TEAIQANIELFSGHKHKPLTARINS--DNSVTLHSWLDRYEKIL 87 Query: 83 HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKHTPSSAIQFLTSM 140 + + I++ S I R D ITTK I + + + +SA +++ Sbjct: 88 ASRGIKQKTLINYMSKIKAIRRGLPDAPLENITTKEIAAMLNGYIDEGKAASAKLIRSTL 147 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL 200 F+ A+ + ++ NP + K + R E ++ +++ S RLA E + Sbjct: 148 SDAFREAIAEGHITTNPVAATRAAKSEVRRSRLTADEYLKIYQAAESSPCWLRLAMELAV 207 Query: 201 YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235 +G R D C + + ++ KTG I + Sbjct: 208 VTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAI 242 >gi|325983273|ref|YP_004295675.1| tyrosine recombinase XerD [Nitrosomonas sp. AL212] gi|325532792|gb|ADZ27513.1| tyrosine recombinase XerD [Nitrosomonas sp. AL212] Length = 303 Score = 39.7 bits (91), Expect = 0.63, Method: Compositional matrix adjust. Identities = 47/209 (22%), Positives = 83/209 (39%), Gaps = 21/209 (10%) Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP---- 192 L+S++ +++ +RQ +AI+P L++E PK + ++++++ S + +QP Sbjct: 82 LSSLKRFYRFLLRQGKIAIDPSLNIETPKLQRHLPESLSEKEVELLLSA-PDLAQPLGLR 140 Query: 193 -RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL------- 244 R E L SGLR S+ + ++ ++ G + P G L Sbjct: 141 DRAMLEALYASGLRVSELINLKYSQVSMDMGVLRVMGKGRKERLA-PVGEESLQWLNRYT 199 Query: 245 -----LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS 297 L + I +T F+ M F K A G+ K S H +R AT Sbjct: 200 KEARPLLLNGIVTDTIFVTTRGAAMTRQAFWYLIKRYAQLVGIAKQLSPHTLRHAFATHL 259 Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGA 326 + GA + G + + YT A Sbjct: 260 LNHGADLRVVQLLLGHADISTTQIYTHIA 288 >gi|320637940|gb|EFX07713.1| Phage integrase family protein [Escherichia coli O157:H7 str. G5101] Length = 356 Score = 39.7 bits (91), Expect = 0.63, Method: Compositional matrix adjust. Identities = 48/215 (22%), Positives = 83/215 (38%), Gaps = 11/215 (5%) Query: 25 FRKGHGRRIRLPYPHESTFIPAYMSALTGST--PKREYINSPRKKPTTLKWLISEYRKSA 82 F G RRI + + I A + +G P INS TL + Y K Sbjct: 35 FGLGRDRRIAI-----TEAIQANIELFSGHKHKPLTARINS--DNSVTLHSWLDRYEKIL 87 Query: 83 HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKHTPSSAIQFLTSM 140 + + I++ S I R D ITTK I + + + +SA +++ Sbjct: 88 ASRGIKQKTLINYMSKIKAIRRGLPDAPLEDITTKEIAAMLNGYIDEGKAASAKLIRSTL 147 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL 200 F+ A+ + ++ NP + K + R E ++ +++ S RLA E + Sbjct: 148 SDAFREAIAEGHITTNPVAATRAAKSEVRRSRLTADEYLKIYQAAESSPCWLRLAMELAV 207 Query: 201 YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235 +G R D C + + ++ KTG I + Sbjct: 208 VTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAI 242 >gi|34541361|ref|NP_905840.1| integrase/recombinase XerD [Porphyromonas gingivalis W83] gi|34397678|gb|AAQ66739.1| integrase/recombinase XerD [Porphyromonas gingivalis W83] Length = 308 Score = 39.7 bits (91), Expect = 0.63, Method: Compositional matrix adjust. Identities = 50/210 (23%), Positives = 88/210 (41%), Gaps = 19/210 (9%) Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---SE 188 S + ++ ++ F++ V +EY+ +P +E P+ T E++ + ++ Sbjct: 70 SIARIISGVKSFFRFLVLEEYIEADPTELLEGPRIGVHLPTVLTIEEVDRLIGSIDPAAQ 129 Query: 189 GSQPRLAFEFLLYS-GLRCSDSCRAGVQHLQNNIFSIKTQKTG----------TIITVEL 237 G+Q A +LYS GLR S+ +L N ++ G T IT EL Sbjct: 130 GAQRNRAILEILYSCGLRVSELTSLKFSNLFLNESFLRIDGKGRKQRLVPMSETAIT-EL 188 Query: 238 PDGFMKLLAMTPI-GKETF-FINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFS 293 TP+ G+E + F++N + ++ + K A +AG+ KS H R Sbjct: 189 KRYLSDPERPTPVLGQEEYVFLSNRGKAISRIMVFVMIKKLAEEAGITKSISPHTFRHSF 248 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYT 323 AT + GA + G + + E YT Sbjct: 249 ATHLLEGGANLQAIQLMLGHENIATTEIYT 278 >gi|229546531|ref|ZP_04435256.1| integrase/recombinase [Enterococcus faecalis TX1322] gi|307277324|ref|ZP_07558423.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX2134] gi|307296545|ref|ZP_07576367.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX0411] gi|229308343|gb|EEN74330.1| integrase/recombinase [Enterococcus faecalis TX1322] gi|306496018|gb|EFM65604.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX0411] gi|306505991|gb|EFM75162.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX2134] gi|315157760|gb|EFU01777.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX0312] Length = 302 Score = 39.7 bits (91), Expect = 0.64, Method: Compositional matrix adjust. Identities = 31/135 (22%), Positives = 60/135 (44%), Gaps = 9/135 (6%) Query: 105 KSGDFDYRKITTKHIRSGV--ESRKHTPSSAIQFLTS-MRVLFKWAVRQEYVAINPCLSV 161 KS + + +I K I+S + K +S I S ++ LF + + ++Y+ NP + + Sbjct: 59 KSINVEPSQIEKKQIKSWIIDMQEKEMQASTINVSVSRLKKLFDYMLIEKYIDYNPFVDI 118 Query: 162 ERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA------FEFLLYSGLRCSDSCRAGVQ 215 ER K + + I P +++Q + + +A ++ GLR S+ C + Sbjct: 119 ERLKEQRKVIYPLNDYEIKQMLTVAKKHPYKHIAQRNVVILMLMIECGLRISEVCEIRDE 178 Query: 216 HLQNNIFSIKTQKTG 230 + NN I+ K Sbjct: 179 DIMNNQIIIRKSKNN 193 >gi|37527448|ref|NP_930792.1| site-specific tyrosine recombinase XerC [Photorhabdus luminescens subsp. laumondii TTO1] gi|37527457|ref|NP_930801.1| site-specific tyrosine recombinase XerC [Photorhabdus luminescens subsp. laumondii TTO1] gi|36786883|emb|CAE15952.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] gi|36786892|emb|CAE15961.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 376 Score = 39.7 bits (91), Expect = 0.64, Method: Compositional matrix adjust. Identities = 45/208 (21%), Positives = 76/208 (36%), Gaps = 20/208 (9%) Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR-----PWTKEDMQQFKSFWSEGSQ 191 L ++V FKW +Q + NP +E P+ + R T++ + Q +G + Sbjct: 109 LEPLKVWFKWLTKQNLILANPAADIELPRLEKHLPRYILTIDETEQILAQPDLTTLQGVR 168 Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL------- 244 R E L +G+R + R V + ++ ++ LP G L Sbjct: 169 DRALMELLWSTGMRRGELTRLDVYSVDGKRKTVTIRQGKGNKDRVLPLGERALSWLQRYQ 228 Query: 245 ------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATI 296 L + P K F + + A S A G+ K + H R AT Sbjct: 229 QQVRPQLIVNPDVKALFVAMDGLDGLQANGISNLVTAYINAVGIEKKGACHLFRHAMATQ 288 Query: 297 SADAGATAHELMATYGWKTVDQAETYTK 324 + GA + A G +V+ + YT+ Sbjct: 289 MLENGADLRWIQAMLGHASVESTQVYTQ 316 >gi|331086445|ref|ZP_08335525.1| hypothetical protein HMPREF0987_01828 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330406211|gb|EGG85734.1| hypothetical protein HMPREF0987_01828 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 353 Score = 39.7 bits (91), Expect = 0.64, Method: Compositional matrix adjust. Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 1/82 (1%) Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER-PKRKTEGIRPWTKEDMQQFKSFW 186 + P+ + LF +AVR + NPC K K + + WTK++ +QF Sbjct: 116 YAPTYLKSINNQLAALFNYAVRYYDLKDNPCRKAGSIGKSKADDMEFWTKQEFKQFLPSM 175 Query: 187 SEGSQPRLAFEFLLYSGLRCSD 208 + + R+AF L ++G+R + Sbjct: 176 DKKPEARMAFMLLYWTGMRIGE 197 >gi|323139749|ref|ZP_08074786.1| integrase family protein [Methylocystis sp. ATCC 49242] gi|322394986|gb|EFX97550.1| integrase family protein [Methylocystis sp. ATCC 49242] Length = 331 Score = 39.7 bits (91), Expect = 0.64, Method: Compositional matrix adjust. Identities = 33/123 (26%), Positives = 56/123 (45%), Gaps = 10/123 (8%) Query: 118 HIRSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR-----KTEG 170 HI + VE+ R H+ +A Q L ++R+LF W V + + NP SV PK KT Sbjct: 83 HIGAYVEALTRSHSAPTAKQRLAAIRMLFDWLVTGQIIPTNPAASVRGPKHVVKVGKTPV 142 Query: 171 IRP-WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQ 227 + P T+ + + G + R ++YS R + V+ ++QN ++ Sbjct: 143 LDPEETRILLDSIDVTTTVGLRDRALIALMVYSFARVGAALAMKVEDVYVQNRRLWVRLH 202 Query: 228 KTG 230 + G Sbjct: 203 EKG 205 >gi|282880564|ref|ZP_06289271.1| phage integrase domain protein [Prevotella timonensis CRIS 5C-B1] gi|281305667|gb|EFA97720.1| phage integrase domain protein [Prevotella timonensis CRIS 5C-B1] Length = 316 Score = 39.7 bits (91), Expect = 0.64, Method: Compositional matrix adjust. Identities = 43/210 (20%), Positives = 85/210 (40%), Gaps = 17/210 (8%) Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS-- 187 P+S + L+ +R +++ V + +P +E P+ + E++ ++ Sbjct: 73 PTSQARILSGVRSFYRFLVLDGRIEQDPTELLESPRLGEHLPEVLSTEEVDMIENSIDLS 132 Query: 188 --EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT---IITV------E 236 EG + + E L GLR S+ + +L ++ G+ ++ + E Sbjct: 133 KPEGQRNKAIIEVLFSCGLRVSELVNLKLSNLYLEEGFVRVMGKGSKERLVPISSKAIRE 192 Query: 237 LPDGFM--KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKF 292 L F+ L+ + ++ F+N + + T I K +A AG+ K S H +R Sbjct: 193 LQYWFVDRNLMKIQQGEEDYVFLNRRGKHLTRTMILIMLKRQAVAAGITKTISPHTLRHS 252 Query: 293 SATISADAGATAHELMATYGWKTVDQAETY 322 AT GA + A G +++ E Y Sbjct: 253 FATELLKGGADLRAIQAMLGHESIGTTELY 282 >gi|261879004|ref|ZP_06005431.1| integrase/recombinase XerD [Prevotella bergensis DSM 17361] gi|270334388|gb|EFA45174.1| integrase/recombinase XerD [Prevotella bergensis DSM 17361] Length = 306 Score = 39.7 bits (91), Expect = 0.64, Method: Compositional matrix adjust. Identities = 45/209 (21%), Positives = 77/209 (36%), Gaps = 17/209 (8%) Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----S 187 S + L+ +R +++ V Y+ ++P +E P T +++ + + Sbjct: 73 SQARILSGVRAFYRFLVLDGYLEVDPTELLESPHLPKHLPEYLTTDEVDMLQDSIDLSTN 132 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII-TVELPDGFMKLLA 246 EG + R E L GLR S+ + L I+ G V + D ++ L Sbjct: 133 EGHRNRAIIEVLFSCGLRVSELTNLKLSDLFLEEQFIRVMGKGNKERLVPISDRAIEELG 192 Query: 247 ----------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSA 294 + P ++ F+N + T I K +A AG+ K S H +R A Sbjct: 193 YWFDDRRQMIIKPGEEDYVFLNRRGHHLTRTMILIMIKRQAEAAGIKKTISPHTLRHSFA 252 Query: 295 TISADAGATAHELMATYGWKTVDQAETYT 323 T GA + G + E YT Sbjct: 253 TALLRGGADLRVIQDLLGHSNIGTTEMYT 281 >gi|158341559|ref|YP_001522723.1| phage integrase [Acaryochloris marina MBIC11017] gi|158311800|gb|ABW33409.1| phage integrase [Acaryochloris marina MBIC11017] Length = 337 Score = 39.7 bits (91), Expect = 0.64, Method: Compositional matrix adjust. Identities = 44/211 (20%), Positives = 89/211 (42%), Gaps = 17/211 (8%) Query: 40 ESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL-ISEYRKSAHWGSLAVNSRISFESY 98 E I A+T R + P+ P L W+ + E+ +S ++ N+R ++E Sbjct: 5 EVKLIVLADQAITPIDTARSRTHPPQTTPADLLWMRVGEFMRSR---EISSNTRKAYERD 61 Query: 99 FDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQF---------LTSMRVLFKWAVR 149 Q + + D + +IT + + K P+ Q L +++ FKW Sbjct: 62 LKQFMDWT-DKGWHEITARDLDRYKNHLKTEPNQRGQLRRNATINRNLAALQSFFKWLTV 120 Query: 150 QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ-FKSFWSEGSQP--RLAFEFLLYSGLRC 206 ++Y+ +P L +E+ K + ++++++ + +++ G A L+ GLR Sbjct: 121 RDYIPKDPTLLLEKLKADPVLPQEFSQDEVDKLYQAICDRGFHAFRDRALLHLIDHGLRA 180 Query: 207 SDSCRAGVQHLQNNIFSIKTQKTGTIITVEL 237 S+ R V +I+ K ++ TV L Sbjct: 181 SEIHRLNVGDYDGQRITIRVAKADSVGTVPL 211 >gi|90962617|ref|YP_536533.1| Phage integrase [Lactobacillus salivarius UCC118] gi|90821811|gb|ABE00450.1| Phage integrase [Lactobacillus salivarius UCC118] Length = 381 Score = 39.7 bits (91), Expect = 0.64, Method: Compositional matrix adjust. Identities = 63/288 (21%), Positives = 116/288 (40%), Gaps = 53/288 (18%) Query: 72 KWLI--SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV-ESRKH 128 +WL E K++ W + + + YF D KIT +H + V ++ K Sbjct: 76 EWLALHKETVKASTWQFIELRANNHVRPYFK-------DMYVDKITLRHCQDFVNKTFKK 128 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT----EGIRPWTKEDMQQFKS 184 P + + L+ ++ +A+R + NP L V +PK++ + + K+++++F Sbjct: 129 APVAYVYSLSIVKNTLDYALRLGMIESNPMLYVIKPKKQASISDKHDNYYNKDELKKFLD 188 Query: 185 FWSEGSQPRLA-FEFLLYSGLRCSDSCRAGVQH---LQNNIFSI---------------- 224 + S + F L YSG+R + C A H +NN +I Sbjct: 189 VAKDTSLKKYTLFRLLAYSGMRIGE-CLALTWHDLDYKNNTIAINKTLARTNNGIKIQTP 247 Query: 225 KTQKTGTIITVELPDGFMKLLAM---------TPIG------KETFFINNDKQKMNATQF 269 KT+ + +I+ L + +++L M +G K+ F N + Sbjct: 248 KTKASNRVIS--LDNETIQVLKMWQLEQRKQLLKVGINAMDSKQLIFSNGKNSFIIVPTV 305 Query: 270 SIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTV 316 + K A KAG++ + HG R AT+ +G ++ A G V Sbjct: 306 RLAIKQIAKKAGIHSITTHGFRHTHATLLFASGLDIKQVQARLGHSNV 353 >gi|301029172|ref|ZP_07192295.1| phage integrase, SAM-like domain protein [Escherichia coli MS 196-1] gi|299877900|gb|EFI86111.1| phage integrase, SAM-like domain protein [Escherichia coli MS 196-1] Length = 326 Score = 39.7 bits (91), Expect = 0.66, Method: Compositional matrix adjust. Identities = 48/215 (22%), Positives = 83/215 (38%), Gaps = 11/215 (5%) Query: 25 FRKGHGRRIRLPYPHESTFIPAYMSALTGST--PKREYINSPRKKPTTLKWLISEYRKSA 82 F G RRI + + I A + +G P INS TL + Y K Sbjct: 5 FGLGRDRRIAI-----TEAIQANIELFSGHKHKPLTARINSD--NSVTLHSWLDRYEKIL 57 Query: 83 HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKHTPSSAIQFLTSM 140 + + I++ S I R D ITTK I + + + +SA +++ Sbjct: 58 ASRGIKQKTLINYMSKIKAIRRGLPDAPLEDITTKEIAAMLNGYIDEGKAASAKLIRSTL 117 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL 200 F+ A+ + ++ NP + K + R E ++ +++ S RLA E + Sbjct: 118 SDAFREAIAEGHITTNPVAATRAAKSEVRRSRLTADEYLKIYQAAESSPCWLRLAMELAV 177 Query: 201 YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235 +G R D C + + ++ KTG I + Sbjct: 178 VTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAI 212 >gi|254166742|ref|ZP_04873596.1| site-specific recombinase, phage integrase family protein [Aciduliprofundum boonei T469] gi|197624352|gb|EDY36913.1| site-specific recombinase, phage integrase family protein [Aciduliprofundum boonei T469] Length = 279 Score = 39.7 bits (91), Expect = 0.66, Method: Compositional matrix adjust. Identities = 44/210 (20%), Positives = 82/210 (39%), Gaps = 14/210 (6%) Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 RK++ +S ++R FK Y ++ ++ PKR + + +++++++ Sbjct: 62 RKYSKNSLYLATKAIRSYFK------YKNLDTAKNLSSPKRPRQMPKYLSEDEVKRLIEA 115 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN--IFSIKTQKTG----TIITVELPD 239 SE + L YSGLR S+ C ++ + N I + + K +++ + + Sbjct: 116 SSENPRDYAIISLLAYSGLRVSELCNLKIEDVDFNERIVYVHSGKGDKDRIVVVSPRVIE 175 Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATIS 297 L E F + K++ Q K A KAG+ K H +R AT Sbjct: 176 ALQNYLYTREDDMEYLFASQKSNKISRVQVFRIVKKYAEKAGIKKEVTPHVLRHTLATTL 235 Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGAD 327 G + G +V + YT D Sbjct: 236 LRRGVDIRFIQQFLGHSSVATTQIYTHVDD 265 >gi|218897574|ref|YP_002445985.1| DNA integration/recombination/invertion protein [Bacillus cereus G9842] gi|218543461|gb|ACK95855.1| DNA integration/recombination/invertion protein [Bacillus cereus G9842] Length = 369 Score = 39.7 bits (91), Expect = 0.66, Method: Compositional matrix adjust. Identities = 26/118 (22%), Positives = 58/118 (49%), Gaps = 5/118 (4%) Query: 95 FESYFDQ-IIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVL---FKWAVRQ 150 + ++ +Q +I G K+ HI+ ++ + + L R+L AV+Q Sbjct: 88 YRAFINQHVIPSIGMVALHKLNVMHIQKCYKTAINKGITNNSILLMHRILKSALNLAVKQ 147 Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSD 208 ++ NP E PK++ I+ WT+E++++F + S+ S+ + + + +G+R + Sbjct: 148 NIISRNPADFAEIPKKEKTSIQTWTEEEVKKFLAH-SQESRYHIGYLLAITTGMRLGE 204 >gi|126173817|ref|YP_001049966.1| phage integrase family protein [Shewanella baltica OS155] gi|125997022|gb|ABN61097.1| phage integrase family protein [Shewanella baltica OS155] Length = 451 Score = 39.7 bits (91), Expect = 0.66, Method: Compositional matrix adjust. Identities = 41/198 (20%), Positives = 79/198 (39%), Gaps = 9/198 (4%) Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-----GSQ 191 L +++ +FK A+RQ + NPC+ + + KR+ R + +MQ+ E GS Sbjct: 163 LDTLQSVFKLALRQGHCLTNPCIGIRQNKRRVLN-RFLSVAEMQRLSVALDECEEVGGSI 221 Query: 192 PRLA--FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTP 249 + A LL +G R S+ ++++ N + KTG + + + + +L+ Sbjct: 222 AQCADILRLLLLTGCRLSEITFLKGEYVRGNELHLPDSKTGAKV-LYIGQAAVDILSRYH 280 Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMA 309 T + S+W + + + H +R A+ + G + + + Sbjct: 281 CKANTELFPMKLGASTSLVQSLWLRLRKQIGIEDVRLHDLRHTFASYAVMDGCSIPMVAS 340 Query: 310 TYGWKTVDQAETYTKGAD 327 G K V YT D Sbjct: 341 LLGHKKVTMTLRYTHVGD 358 >gi|320201208|gb|EFW75790.1| Phage integrase [Escherichia coli EC4100B] Length = 356 Score = 39.7 bits (91), Expect = 0.66, Method: Compositional matrix adjust. Identities = 48/215 (22%), Positives = 83/215 (38%), Gaps = 11/215 (5%) Query: 25 FRKGHGRRIRLPYPHESTFIPAYMSALTGST--PKREYINSPRKKPTTLKWLISEYRKSA 82 F G RRI + + I A + +G P INS TL + Y K Sbjct: 35 FGLGRDRRIAI-----TEAIQANIELFSGHKHKPLTARINS--DNSVTLHSWLDRYEKIL 87 Query: 83 HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKHTPSSAIQFLTSM 140 + + I++ S I R D ITTK I + + + +SA +++ Sbjct: 88 ASRGIKQKTLINYMSKIKAIRRGLPDAPLEDITTKEIAAMLNGYIDEGKAASAKLIRSTL 147 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL 200 F+ A+ + ++ NP + K + R E ++ +++ S RLA E + Sbjct: 148 SDAFREAIAEGHITTNPVAATRAAKSEVRRSRLTADEYLKIYQAAESSPCWLRLAMELAV 207 Query: 201 YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235 +G R D C + + ++ KTG I + Sbjct: 208 VTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAI 242 >gi|149194209|ref|ZP_01871307.1| Phage integrase [Caminibacter mediatlanticus TB-2] gi|149136162|gb|EDM24640.1| Phage integrase [Caminibacter mediatlanticus TB-2] Length = 268 Score = 39.7 bits (91), Expect = 0.66, Method: Compositional matrix adjust. Identities = 34/163 (20%), Positives = 70/163 (42%), Gaps = 7/163 (4%) Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231 +P + E++++ + LA + GLR S++ + + + IK + T Sbjct: 100 KPISLENIKE--ALKVANMDEYLAIIVIFSLGLRISEALNIKLSDIHGDWIEIKGKGNKT 157 Query: 232 IITV---ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHG 288 I +L + K L + P K+ + D +K + Q + K G++ + H Sbjct: 158 RILPLHPKLKEFIQKYLKINP--KKEYLFEKDGKKYSENQLRYNIQKAFKKIGIHATPHQ 215 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 +R AT D GA +++ G + + + YTK ++ ++L Sbjct: 216 LRHSFATYMLDKGARINDVSELLGHEFISTTQIYTKLSNSLKL 258 >gi|9634144|ref|NP_037686.1| integrase [Enterobacteria phage HK022] gi|138560|sp|P16407|VINT_BPHK0 RecName: Full=Integrase gi|6863136|gb|AAF30377.1|AF069308_25 integrase [Enterobacteria phage HK022] gi|15760|emb|CAA36221.1| unnamed protein product [Enterobacteria phage HK022] gi|16209083|gb|AAL09856.1| integrase [CRIM helper plasmid pAH69] gi|16209095|gb|AAL09864.1| integrase [CRIM helper plasmid pAH83] Length = 357 Score = 39.7 bits (91), Expect = 0.66, Method: Compositional matrix adjust. Identities = 33/147 (22%), Positives = 63/147 (42%), Gaps = 2/147 (1%) Query: 93 ISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQ 150 + + S I RK D I+TK + + + + + +SA +++ +F+ A+ + Sbjct: 98 LDYASKIRAIRRKLPDKPLADISTKEVAAMLNTYVAEGKSASAKLIRSTLVDVFREAIAE 157 Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSC 210 +VA NP + K + R E + + + RLA + + +G R D C Sbjct: 158 GHVATNPVTATRTAKSEVRRSRLTANEYVAIYHAAEPLPIWLRLAMDLAVVTGQRVGDLC 217 Query: 211 RAGVQHLQNNIFSIKTQKTGTIITVEL 237 R + +N I+ KTG + + L Sbjct: 218 RMKWSDINDNHLHIEQSKTGAKLAIPL 244 >gi|9634162|ref|NP_037720.1| integrase [Enterobacteria phage HK97] gi|218694191|ref|YP_002401858.1| Integrase from phage [Escherichia coli 55989] gi|309797063|ref|ZP_07691462.1| phage integrase, SAM-like domain protein [Escherichia coli MS 145-7] gi|331676448|ref|ZP_08377145.1| integrase [Escherichia coli H591] gi|6901591|gb|AAF31094.1|AF069529_7 integrase [Enterobacteria phage HK97] gi|218350923|emb|CAU96623.1| Integrase from phage [Escherichia coli 55989] gi|308119346|gb|EFO56608.1| phage integrase, SAM-like domain protein [Escherichia coli MS 145-7] gi|331075941|gb|EGI47238.1| integrase [Escherichia coli H591] Length = 356 Score = 39.7 bits (91), Expect = 0.67, Method: Compositional matrix adjust. Identities = 48/215 (22%), Positives = 83/215 (38%), Gaps = 11/215 (5%) Query: 25 FRKGHGRRIRLPYPHESTFIPAYMSALTGST--PKREYINSPRKKPTTLKWLISEYRKSA 82 F G RRI + + I A + +G P INS TL + Y K Sbjct: 35 FGLGRDRRIAI-----TEAIQANIELFSGHKHKPLTARINS--DNSVTLHSWLDRYEKIL 87 Query: 83 HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKHTPSSAIQFLTSM 140 + + I++ S I R D ITTK I + + + +SA +++ Sbjct: 88 ASRGIKQKTLINYMSKIKAIRRGLPDAPLEDITTKEIAAMLNGYIDEGKAASAKLIRSTL 147 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL 200 F+ A+ + ++ NP + K + R E ++ +++ S RLA E + Sbjct: 148 SDAFREAIAEGHITTNPVAATRAAKSEVRRSRLTADEYLKIYQAAESSPCWLRLAMELAV 207 Query: 201 YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235 +G R D C + + ++ KTG I + Sbjct: 208 VTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAI 242 >gi|329957482|ref|ZP_08297957.1| site-specific recombinase, phage integrase family [Bacteroides clarus YIT 12056] gi|328522359|gb|EGF49468.1| site-specific recombinase, phage integrase family [Bacteroides clarus YIT 12056] Length = 393 Score = 39.7 bits (91), Expect = 0.67, Method: Compositional matrix adjust. Identities = 71/323 (21%), Positives = 118/323 (36%), Gaps = 59/323 (18%) Query: 30 GRRIRLPY--------PHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKS 81 G+RI L + S+FI + +T S+ K NS ++ + L+ E++K Sbjct: 86 GKRISLELLKNMLTTQENNSSFISFFKQEVTNSSLK----NSTKRNHLSTLMLLQEFKKD 141 Query: 82 AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMR 141 + L SFE YF Q+ H + + KH Sbjct: 142 ITFSDLTFEFVSSFE-YFLQL------------KGYHTNTIAKHMKHLKRHV-------- 180 Query: 142 VLFKWAVRQEYVAINPC----LSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL--- 194 A+ +EY+ I ++ + K + P E++++ + G +L Sbjct: 181 ---NIAINKEYIEIQKYAFRKYKIKTVENKHTHLVP---EELEKLEKLNLSGRYMKLQKS 234 Query: 195 --AFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVELPDGF----MKL 244 AF F Y+G+R SD +++ Q K+ KTGT + + L F + + Sbjct: 235 LDAFLFCCYAGMRYSDFTNLSSENIVDINQETWLIYKSVKTGTEVRLPLYLLFAGKGIII 294 Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATA 304 L E FF D +N ++ AK N S H R +AT+ G Sbjct: 295 LNKYRDNLEGFFRLRDNSNVNKDLLTL---AKLAGLSKNISFHTARHTNATLLIYNGVNI 351 Query: 305 HELMATYGWKTVDQAETYTKGAD 327 + G K+V + YT D Sbjct: 352 TTVQKLLGHKSVKTTQVYTNIMD 374 >gi|315641316|ref|ZP_07896392.1| tyrosine recombinase XerC [Enterococcus italicus DSM 15952] gi|315482889|gb|EFU73409.1| tyrosine recombinase XerC [Enterococcus italicus DSM 15952] Length = 185 Score = 39.7 bits (91), Expect = 0.67, Method: Compositional matrix adjust. Identities = 23/79 (29%), Positives = 43/79 (54%), Gaps = 13/79 (16%) Query: 143 LFKWAVRQEYVAINPCLSVERPKR-----KTEGIRPWTKEDMQQFKSFWSEGSQP----- 192 +FK+A+ + NP V PKR +TE I+ +TK+++++ + + ++P Sbjct: 9 VFKYAINLGIIDRNPLEYVLMPKRIKEAPRTEKIKVYTKQELKELFHYL-DNTKPSYNND 67 Query: 193 --RLAFEFLLYSGLRCSDS 209 + F FL+YSG R S++ Sbjct: 68 FNNILFRFLIYSGCRISEA 86 >gi|300926171|ref|ZP_07141983.1| phage integrase, SAM-like domain protein [Escherichia coli MS 182-1] gi|300417806|gb|EFK01117.1| phage integrase, SAM-like domain protein [Escherichia coli MS 182-1] Length = 356 Score = 39.7 bits (91), Expect = 0.67, Method: Compositional matrix adjust. Identities = 48/215 (22%), Positives = 83/215 (38%), Gaps = 11/215 (5%) Query: 25 FRKGHGRRIRLPYPHESTFIPAYMSALTGST--PKREYINSPRKKPTTLKWLISEYRKSA 82 F G RRI + + I A + +G P INS TL + Y K Sbjct: 35 FGLGRDRRIAI-----TEAIQANIELFSGHKHKPLTARINS--DNSVTLHSWLDRYEKIL 87 Query: 83 HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKHTPSSAIQFLTSM 140 + + I++ S I R D ITTK I + + + +SA +++ Sbjct: 88 ASRGIKQKTLINYISKIKAIRRGLPDASLEDITTKEIAAMLNGYIDEGKAASAKLIRSTL 147 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL 200 F+ A+ + ++ NP + K + R E ++ +++ S RLA E + Sbjct: 148 SDAFREAIAEGHITTNPVAATRAAKSEVRRSRLTADEYLKIYQAAESSPCWLRLAMELAV 207 Query: 201 YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235 +G R D C + + ++ KTG I + Sbjct: 208 VTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAI 242 >gi|315646363|ref|ZP_07899481.1| integrase family protein [Paenibacillus vortex V453] gi|315278006|gb|EFU41326.1| integrase family protein [Paenibacillus vortex V453] Length = 294 Score = 39.7 bits (91), Expect = 0.68, Method: Compositional matrix adjust. Identities = 34/190 (17%), Positives = 83/190 (43%), Gaps = 17/190 (8%) Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF----KSFW 186 SS ++ S+R F++ VRQ + +P ++RPK + + + T E + + S Sbjct: 68 SSQLRCTASLRSFFQYLVRQSVIGQDPTQLLDRPKPERKPPQAVTIEQVDKLLSAPDSDT 127 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246 +G++ R E L SG++ S+ + L + + +P G ++L Sbjct: 128 PQGARDRAMLELLYASGIKVSELVSLSIHDLNMEM---------RFLRCAVPGGKERILP 178 Query: 247 MTPIGKET--FFINNDKQKM--NATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGA 302 ++ I ++ +++ + + ++ +A + +++ + T+ ++K+ D Sbjct: 179 ISQIAAQSVAYYMRDMRSQLIRDAEEEALFLNSLGTRLTRQGFWKIIKKYGKLAEIDEEI 238 Query: 303 TAHELMATYG 312 T H L ++ Sbjct: 239 TPHTLRHSFA 248 >gi|168750266|ref|ZP_02775288.1| phage integrase family [Escherichia coli O157:H7 str. EC4113] gi|168757063|ref|ZP_02782070.1| phage integrase family [Escherichia coli O157:H7 str. EC4401] gi|168767219|ref|ZP_02792226.1| phage integrase family [Escherichia coli O157:H7 str. EC4486] gi|168776481|ref|ZP_02801488.1| phage integrase family [Escherichia coli O157:H7 str. EC4196] gi|168779262|ref|ZP_02804269.1| phage integrase family [Escherichia coli O157:H7 str. EC4076] gi|168800794|ref|ZP_02825801.1| phage integrase family protein [Escherichia coli O157:H7 str. EC508] gi|193065593|ref|ZP_03046660.1| phage integrase family [Escherichia coli E22] gi|194429706|ref|ZP_03062223.1| phage integrase family protein [Escherichia coli B171] gi|195936762|ref|ZP_03082144.1| lambda integrase [Escherichia coli O157:H7 str. EC4024] gi|208807102|ref|ZP_03249439.1| phage integrase family protein [Escherichia coli O157:H7 str. EC4206] gi|208815031|ref|ZP_03256210.1| phage integrase family protein [Escherichia coli O157:H7 str. EC4045] gi|208822504|ref|ZP_03262823.1| phage integrase family protein [Escherichia coli O157:H7 str. EC4042] gi|209397327|ref|YP_002269402.1| phage integrase family protein [Escherichia coli O157:H7 str. EC4115] gi|254160836|ref|YP_003043944.1| integrase [Escherichia coli B str. REL606] gi|291281709|ref|YP_003498527.1| Phage integrase family [Escherichia coli O55:H7 str. CB9615] gi|307137380|ref|ZP_07496736.1| Phage integrase family protein [Escherichia coli H736] gi|331641269|ref|ZP_08342404.1| integrase [Escherichia coli H736] gi|331645918|ref|ZP_08347021.1| integrase [Escherichia coli M605] gi|187768129|gb|EDU31973.1| phage integrase family [Escherichia coli O157:H7 str. EC4196] gi|188015490|gb|EDU53612.1| phage integrase family [Escherichia coli O157:H7 str. EC4113] gi|189002936|gb|EDU71922.1| phage integrase family [Escherichia coli O157:H7 str. EC4076] gi|189355874|gb|EDU74293.1| phage integrase family [Escherichia coli O157:H7 str. EC4401] gi|189363411|gb|EDU81830.1| phage integrase family [Escherichia coli O157:H7 str. EC4486] gi|189376950|gb|EDU95366.1| phage integrase family protein [Escherichia coli O157:H7 str. EC508] gi|192926778|gb|EDV81405.1| phage integrase family [Escherichia coli E22] gi|194412265|gb|EDX28570.1| phage integrase family protein [Escherichia coli B171] gi|208726903|gb|EDZ76504.1| phage integrase family protein [Escherichia coli O157:H7 str. EC4206] gi|208731679|gb|EDZ80367.1| phage integrase family protein [Escherichia coli O157:H7 str. EC4045] gi|208737989|gb|EDZ85672.1| phage integrase family protein [Escherichia coli O157:H7 str. EC4042] gi|209158727|gb|ACI36160.1| phage integrase family protein [Escherichia coli O157:H7 str. EC4115] gi|253972737|gb|ACT38408.1| integrase [Escherichia coli B str. REL606] gi|290761582|gb|ADD55543.1| Phage integrase family [Escherichia coli O55:H7 str. CB9615] gi|309700991|emb|CBJ00289.1| integrase [Escherichia coli ETEC H10407] gi|315614643|gb|EFU95285.1| integrase [Escherichia coli 3431] gi|320643338|gb|EFX12524.1| Phage integrase family protein [Escherichia coli O157:H- str. 493-89] gi|320648681|gb|EFX17319.1| Phage integrase family protein [Escherichia coli O157:H- str. H 2687] gi|320664810|gb|EFX31948.1| Phage integrase family protein [Escherichia coli O157:H7 str. LSU-61] gi|323158819|gb|EFZ44832.1| integrase [Escherichia coli E128010] gi|323191112|gb|EFZ76377.1| integrase [Escherichia coli RN587/1] gi|326345702|gb|EGD69441.1| Phage integrase [Escherichia coli O157:H7 str. 1125] gi|327254456|gb|EGE66078.1| integrase [Escherichia coli STEC_7v] gi|331038067|gb|EGI10287.1| integrase [Escherichia coli H736] gi|331044670|gb|EGI16797.1| integrase [Escherichia coli M605] Length = 356 Score = 39.7 bits (91), Expect = 0.68, Method: Compositional matrix adjust. Identities = 48/215 (22%), Positives = 83/215 (38%), Gaps = 11/215 (5%) Query: 25 FRKGHGRRIRLPYPHESTFIPAYMSALTGST--PKREYINSPRKKPTTLKWLISEYRKSA 82 F G RRI + + I A + +G P INS TL + Y K Sbjct: 35 FGLGRDRRIAI-----TEAIQANIELFSGHKHKPLTARINS--DNSVTLHSWLDRYEKIL 87 Query: 83 HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKHTPSSAIQFLTSM 140 + + I++ S I R D ITTK I + + + +SA +++ Sbjct: 88 ASRGIKQKTLINYMSKIKAIRRGLPDAPLEDITTKEIAAMLNGYIDEGKAASAKLIRSTL 147 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL 200 F+ A+ + ++ NP + K + R E ++ +++ S RLA E + Sbjct: 148 SDAFREAIAEGHITTNPVAATRAAKSEVRRSRLTADEYLKIYQAAESSPCWLRLAMELAV 207 Query: 201 YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235 +G R D C + + ++ KTG I + Sbjct: 208 VTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAI 242 >gi|62182418|ref|YP_218835.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|62130051|gb|AAX67754.1| putative integrase/recombinase, site-specific [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|322716911|gb|EFZ08482.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 300 Score = 39.7 bits (91), Expect = 0.68, Method: Compositional matrix adjust. Identities = 45/215 (20%), Positives = 86/215 (40%), Gaps = 23/215 (10%) Query: 93 ISFESYFDQIIRKSGDF---DYRKITTKHIRS-GVESRKHT--PSSAIQFLTSMRVLFKW 146 ++++ D II +G+ +++ +RS V SR+ P+S L+++R F W Sbjct: 29 LNYQRQLDAIIALAGEAGLKSWQQCDAAIVRSFAVRSRRKGLGPASLALRLSALRSFFDW 88 Query: 147 AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP-----RLAFEFLLY 201 V Q + NP V PK + +D+ + + + P R E + Sbjct: 89 LVSQGELKANPAKGVSAPKAPRHLPKNIDVDDVNRLLDI--DLNDPLAVRDRAMLEVMYG 146 Query: 202 SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG---------FMKLLAMTPIGK 252 +GLR S+ ++HL + + G+ LP G ++ L + + Sbjct: 147 AGLRLSELVGLDIKHLDLDTGEVWVMGKGS-KERRLPIGRNAVTWIEHWLDLRGLFASDE 205 Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAH 287 E F++ ++++A F K G+N H Sbjct: 206 EALFLSKLGKRISARNVQKRFAEWGIKQGLNSHVH 240 >gi|255026410|ref|ZP_05298396.1| hypothetical protein LmonocytFSL_08880 [Listeria monocytogenes FSL J2-003] Length = 290 Score = 39.7 bits (91), Expect = 0.68, Method: Compositional matrix adjust. Identities = 46/216 (21%), Positives = 89/216 (41%), Gaps = 24/216 (11%) Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 +P S +++ S+R F + + ++ +P + +E PK+ + +D+++ S S+ Sbjct: 67 SPRSVARYIASLRSFFHYLMHDGKMSHDPMIQIETPKQAKGLPKVLNLDDVEKLLS-SSD 125 Query: 189 GSQP-----RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG------------- 230 S P + E L +GLR ++ + L ++ I+T G Sbjct: 126 TSTPLGLRDQAMMEILYATGLRVTELVSLKMDDLHLHMGFIQTIGKGDKERIIPLGKTAT 185 Query: 231 TIITVELPDGFMKLLAMTPIGKETF-FINNDKQKMNATQFSIWFKAKATKAGVNK--SAH 287 T++ L + KL P + F F+N+ Q + F K A ++G+ K + H Sbjct: 186 TVLEKYLEEARPKL--RRPKYRNDFVFLNHHGQGLTRQGFWKILKGIAKESGIEKPITPH 243 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 +R AT + GA + G + + YT Sbjct: 244 TLRHSFATHLLENGADLRSVQELLGHADISTTQIYT 279 >gi|37525317|ref|NP_928661.1| site-specific tyrosine recombinase XerC [Photorhabdus luminescens subsp. laumondii TTO1] gi|37527576|ref|NP_930920.1| site-specific tyrosine recombinase XerC [Photorhabdus luminescens subsp. laumondii TTO1] gi|36784744|emb|CAE13652.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] gi|36787011|emb|CAE16085.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 376 Score = 39.7 bits (91), Expect = 0.68, Method: Compositional matrix adjust. Identities = 49/215 (22%), Positives = 86/215 (40%), Gaps = 34/215 (15%) Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR-PWTKEDMQQFKSFWS----EGSQ 191 L ++V FKW +Q + NP +E P+ + R + ++++ S +G++ Sbjct: 109 LQPLQVWFKWLTKQNLILANPAADIELPREEKRLPRYILSIDEIEHILSLPDPNTLQGAR 168 Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVE------LPDGFMKL 244 R E L +G+R S++ R +I+SI ++KT TI + LP G L Sbjct: 169 DRALMELLWSTGIRRSEAARL-------DIYSIDGSRKTVTIRQGKGNKDRVLPLGERAL 221 Query: 245 -------------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289 L +TP + F + + + AG+ K + H Sbjct: 222 NWLQFYQQQVRPQLLVTPDIQSLFVAMDGLDGLQPNGITNAVSGYIRAAGIEKKGACHLF 281 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 R AT + GA + A G +V+ + YT+ Sbjct: 282 RHAMATQMLENGADLRWIQAMLGHASVESTQVYTQ 316 >gi|329667457|gb|AEB93405.1| integrase/recombinase XerD [Lactobacillus johnsonii DPC 6026] Length = 296 Score = 39.7 bits (91), Expect = 0.70, Method: Compositional matrix adjust. Identities = 46/226 (20%), Positives = 96/226 (42%), Gaps = 23/226 (10%) Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF----KSFW 186 +S + ++S+R ++W +RQ+ + +P + ++ PK + ++E++ + + Sbjct: 67 TSISRMISSLRKFYQWLLRQDIIERDPLVKIDSPKSERRLPTALSEEEVTKLLDAPDTNT 126 Query: 187 SEGSQPRLAFEFLLYSGLRCSD--SCRAGVQHLQNNIFSI--KTQKTGTIITVELP---- 238 G + R E L +G+R S+ + R G H + I + K K + E+ Sbjct: 127 RLGIRDRAMLEVLYATGMRVSELINLRTGDIHSELKIIRVLGKGSKERLVPVTEVALSWL 186 Query: 239 DGFMKLLAMTPIGK-----ETFFINNDKQKMNATQFSIWFKAK--ATKAGVNKSA--HGV 289 + + K + + K + F+NN ++ T+ ++W K K G+ K+ H + Sbjct: 187 EKYQKDVRENQVLKSGQFTDVIFLNNHGHQL--TRQAVWQKIKKYCQLIGITKNVTPHTL 244 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335 R AT + GA + G + + YT + L + N Sbjct: 245 RHTFATHLLENGADLRVVQEILGHSDITTTQIYTNLTQKHILEVYN 290 >gi|289167066|ref|YP_003445333.1| site-specific recombinase, phage integrase family [Streptococcus mitis B6] gi|288906631|emb|CBJ21465.1| site-specific recombinase, phage integrase family [Streptococcus mitis B6] Length = 377 Score = 39.7 bits (91), Expect = 0.71, Method: Compositional matrix adjust. Identities = 32/140 (22%), Positives = 66/140 (47%), Gaps = 9/140 (6%) Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITT--KHIRSGVESRKHTPSSAI- 134 +RK+++ + N + YF ++ G Y I +H+R V P S Sbjct: 78 HRKASYINTQDNNYNKHIKDYF-SMVDNVGKLTYEDIYQFREHLRQKVAKNSDKPLSTNT 136 Query: 135 --QFLTSMRVLFKWAVRQEYVAINPCLSVER-PKRKTEGIRPWTKEDMQQFKSFWS-EGS 190 + + ++ +F +R+ Y + NP +++ P KT+ ++ WT ++ Q+F + + E Sbjct: 137 INKIMILLKKIFDVGLRKGYYSSNPAKLIKKLPIEKTK-MQFWTVKEFQKFLTLFEPEEY 195 Query: 191 QPRLAFEFLLYSGLRCSDSC 210 +L F L ++GLR ++ Sbjct: 196 NIKLLFTVLFFTGLRLGEAL 215 >gi|29345643|ref|NP_809146.1| integrase [Bacteroides thetaiotaomicron VPI-5482] gi|29337535|gb|AAO75340.1| integrase [Bacteroides thetaiotaomicron VPI-5482] Length = 373 Score = 39.7 bits (91), Expect = 0.71, Method: Compositional matrix adjust. Identities = 57/217 (26%), Positives = 89/217 (41%), Gaps = 23/217 (10%) Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ-- 181 ++RK +SA + ++ R A R + NP +ER E I P KE + Q Sbjct: 153 KNRKLHINSAANYWSTFRASIHTAYRDRKIKENPNGFLER----IETI-PTDKEHLSQDE 207 Query: 182 -FKSFWSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQ----NNIFSIKT--QKTGTI 232 + + S P L AF F + LR SD + + +Q + + + T QKT I Sbjct: 208 VIRLASTPCSAPALKRAFLFSCLTALRKSDIKKLTWEEIQPYGSDGVMYVTTRMQKTKDI 267 Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290 + + + ++L+ +P + F + K M W K AG+ K S H R Sbjct: 268 VHNPISEEALELIGYSPDKRGKVFPDF-KDSMTQAPLKNWLK----DAGITKHISYHCSR 322 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 A + DAG + + G K V E Y K +D Sbjct: 323 HSFACLQLDAGTSIAVVQRYLGHKNVATTEVYAKISD 359 >gi|302389829|ref|YP_003825650.1| tyrosine recombinase XerD subunit [Thermosediminibacter oceani DSM 16646] gi|302200457|gb|ADL08027.1| tyrosine recombinase XerD subunit [Thermosediminibacter oceani DSM 16646] Length = 299 Score = 39.7 bits (91), Expect = 0.72, Method: Compositional matrix adjust. Identities = 48/228 (21%), Positives = 88/228 (38%), Gaps = 53/228 (23%) Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQFKSFW 186 SS + +++ + + VR+ Y+ +P ++++ PK + + R T E+ ++Q + Sbjct: 72 SSISRACAAIKSFYHFLVRERYIQEDPTVNLDTPKLEKKLPRVLTVEEVERLLEQPDTSN 131 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246 G + + E L +G+R S+ + S+ T+ V L GF++ L Sbjct: 132 PLGFRDKTMLEVLYATGIRVSE------------LISL------TVDDVNLDMGFLRCLG 173 Query: 247 ------MTPIGK-----------------------ETFFINNDKQKMNATQFSIWFKAKA 277 + PIG F+N+ Q + F K A Sbjct: 174 KGSKERIVPIGSFAVNYLRQYINDVRKKILKGKSTNILFVNHMGQALTRQGFWKIIKKYA 233 Query: 278 TKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 KAG+NK + H +R AT + GA + G + + YT Sbjct: 234 RKAGINKVITPHTLRHSFATHLIENGADLRAVQEMLGHADISTTQVYT 281 >gi|16767219|ref|NP_462834.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|167553868|ref|ZP_02347612.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167993887|ref|ZP_02574980.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168233881|ref|ZP_02658939.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168822681|ref|ZP_02834681.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194470289|ref|ZP_03076273.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|197251815|ref|YP_002148873.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|224585764|ref|YP_002639563.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|238912952|ref|ZP_04656789.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|2497413|sp|P55888|XERC_SALTY RecName: Full=Tyrosine recombinase xerC gi|1916339|gb|AAC45778.1| site-specific recombinase [Salmonella enterica subsp. enterica serovar Typhimurium] gi|6960253|gb|AAF33443.1| S. typhimurium site-specific recombinase (XERC) (SP:P55888); contains similarity to Pfam family PF00589 ('Phage' integrase family), score=227.1, E=2.5e-64, N=1 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|16422513|gb|AAL22793.1| putative site-specific integrase/recombinase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|194456653|gb|EDX45492.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|197215518|gb|ACH52915.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|205321790|gb|EDZ09629.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205328137|gb|EDZ14901.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205332099|gb|EDZ18863.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205340961|gb|EDZ27725.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|224470292|gb|ACN48122.1| tyrosine recombinase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|261249072|emb|CBG26933.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267996228|gb|ACY91113.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301160464|emb|CBW19994.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312915067|dbj|BAJ39041.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320088359|emb|CBY98119.1| Tyrosine recombinase xerC [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321225467|gb|EFX50524.1| Tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323132296|gb|ADX19726.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] Length = 300 Score = 39.7 bits (91), Expect = 0.72, Method: Compositional matrix adjust. Identities = 45/215 (20%), Positives = 86/215 (40%), Gaps = 23/215 (10%) Query: 93 ISFESYFDQIIRKSGDF---DYRKITTKHIRS-GVESRKHT--PSSAIQFLTSMRVLFKW 146 ++++ D II +G+ +++ +RS V SR+ P+S L+++R F W Sbjct: 29 LNYQRQLDAIIALAGETGLKSWQQCDAAIVRSFAVRSRRKGLGPASLALRLSALRSFFDW 88 Query: 147 AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP-----RLAFEFLLY 201 V Q + NP V PK + +D+ + + + P R E + Sbjct: 89 LVSQGELKANPAKGVSAPKAPRHLPKNIDVDDVNRLLDI--DLNDPLAVRDRAMLEVMYG 146 Query: 202 SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG---------FMKLLAMTPIGK 252 +GLR S+ ++HL + + G+ LP G ++ L + + Sbjct: 147 AGLRLSELVGLDIKHLDLDTGEVWVMGKGS-KERRLPIGRNAVTWIEHWLDLRGLFASDE 205 Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAH 287 E F++ ++++A F K G+N H Sbjct: 206 EALFLSKLGKRISARNVQKRFAEWGIKQGLNSHVH 240 >gi|296114058|ref|YP_003627996.1| tyrosine recombinase XerD [Moraxella catarrhalis RH4] gi|295921752|gb|ADG62103.1| tyrosine recombinase XerD [Moraxella catarrhalis RH4] gi|326559455|gb|EGE09878.1| tyrosine recombinase XerD [Moraxella catarrhalis 7169] gi|326561283|gb|EGE11642.1| tyrosine recombinase XerD [Moraxella catarrhalis 46P47B1] gi|326565171|gb|EGE15362.1| tyrosine recombinase XerD [Moraxella catarrhalis 103P14B1] gi|326567828|gb|EGE17932.1| tyrosine recombinase XerD [Moraxella catarrhalis 12P80B1] gi|326568170|gb|EGE18252.1| tyrosine recombinase XerD [Moraxella catarrhalis BC8] gi|326572813|gb|EGE22798.1| tyrosine recombinase XerD [Moraxella catarrhalis CO72] gi|326573743|gb|EGE23701.1| tyrosine recombinase XerD [Moraxella catarrhalis O35E] gi|326574632|gb|EGE24568.1| tyrosine recombinase XerD [Moraxella catarrhalis 101P30B1] Length = 307 Score = 39.7 bits (91), Expect = 0.72, Method: Compositional matrix adjust. Identities = 59/273 (21%), Positives = 101/273 (36%), Gaps = 23/273 (8%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS---GVESRKHTPS 131 +SE+R + L++ +R ++ IR S D +R+ ++ K + Sbjct: 22 LSEFRAAMLARGLSIATRNAYSQDVRLCIRLS-DTPVNLWQPSDVRNHLMCLKDAKKSER 80 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS---- 187 S + L S+ F W + Y NPC S++ PK + +++++ Sbjct: 81 SIARALASLCQFFLWQIESGYREDNPCESIKTPKLGKTLPKTLSEQEVSSLLDAPDISSV 140 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM 247 G + + E L GLR S+ ++HL + G + + +P G L A+ Sbjct: 141 RGLRDKAMLEVLYACGLRVSELTSLSLEHLNLTAGWLSVTGKGNKMRL-IPLGEYALSAL 199 Query: 248 TP---------IGK---ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFS 293 IGK + F+ M F K A AG+N S H +R Sbjct: 200 NEYLAVRGSLLIGKKDCQAVFLTEQGGYMTRHNFWHLIKKYALMAGINTAISPHTLRHAF 259 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGA 326 AT + GA + G + + YT A Sbjct: 260 ATHLVNHGADLRSVQLLLGHSDLSTTQIYTHVA 292 >gi|15615028|ref|NP_243331.1| integrase/recombinase [Bacillus halodurans C-125] gi|34223073|sp|Q9KA25|XERC_BACHD RecName: Full=Tyrosine recombinase xerC gi|10175085|dbj|BAB06184.1| integrase/recombinase [Bacillus halodurans C-125] Length = 303 Score = 39.7 bits (91), Expect = 0.72, Method: Compositional matrix adjust. Identities = 28/114 (24%), Positives = 57/114 (50%), Gaps = 6/114 (5%) Query: 116 TKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175 +H + + +++ S+ + L+++R +++ VR+++V NP L PK + Sbjct: 57 VRHYLTVLYEQEYARSTVSRKLSTLRSFYQFLVREKWVMENPFLLAHTPKGVKKLPSFLY 116 Query: 176 KEDMQQFKSFWSEGSQP-----RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224 +E+M+Q + G P R FE + SGLR S+ C +Q + +I ++ Sbjct: 117 EEEMEQLLDALN-GDSPLQLRNRALFETIYASGLRVSECCGLKLQDVDLSIGTV 169 >gi|312965202|ref|ZP_07779439.1| integrase [Escherichia coli 2362-75] gi|312290293|gb|EFR18176.1| integrase [Escherichia coli 2362-75] Length = 356 Score = 39.7 bits (91), Expect = 0.74, Method: Compositional matrix adjust. Identities = 48/215 (22%), Positives = 83/215 (38%), Gaps = 11/215 (5%) Query: 25 FRKGHGRRIRLPYPHESTFIPAYMSALTGST--PKREYINSPRKKPTTLKWLISEYRKSA 82 F G RRI + + I A + +G P INS TL + Y K Sbjct: 35 FGLGRDRRIAI-----TEAIQANIELFSGHKHKPLTARINS--DNSVTLHSWLDRYEKIL 87 Query: 83 HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKHTPSSAIQFLTSM 140 + + I++ S I R D ITTK I + + + +SA +++ Sbjct: 88 ASRGIKQKTLINYMSKIKAIRRGLPDAPLEDITTKEIAAMLSGYIDEGKAASAKLIRSTL 147 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL 200 F+ A+ + ++ NP + K + R E ++ +++ S RLA E + Sbjct: 148 SDAFREAIAEGHITTNPVAATRAAKSEVRRSRLTADEYLKIYQAAESSPCWLRLAMELAV 207 Query: 201 YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235 +G R D C + + ++ KTG I + Sbjct: 208 VTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAI 242 >gi|75761152|ref|ZP_00741143.1| DNA integration/recombination/inversion protein [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228904570|ref|ZP_04068646.1| DNA integration/recombination/inversion protein [Bacillus thuringiensis IBL 4222] gi|74491351|gb|EAO54576.1| DNA integration/recombination/inversion protein [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228855051|gb|EEM99634.1| DNA integration/recombination/inversion protein [Bacillus thuringiensis IBL 4222] Length = 392 Score = 39.7 bits (91), Expect = 0.74, Method: Compositional matrix adjust. Identities = 58/225 (25%), Positives = 91/225 (40%), Gaps = 49/225 (21%) Query: 60 YINSPRK--KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK 117 YIN P K +WL + Y KS SL V + S ++++ + + IT K Sbjct: 60 YINEPDILFKDFVQEWL-NIYSKSTKISSLRVRQKQS-----NKLVDFFANIKMKDITKK 113 Query: 118 HIRSGVESRKHTPSSAIQFL----TSMRVLFKWAVRQEYVAINPCLSVERPKRKTE---- 169 ++ + H A L T+ R++FK A+ + + NP +V+ P RK E Sbjct: 114 MYQTALNDL-HDKGYAFNTLDGIHTAGRMIFKKAIELQIIKSNPTDNVKLP-RKVETVED 171 Query: 170 ------GIRPWTKEDMQQFKSFWSEG--SQPRLAFEFLLYSGLRCSD--SCRAGVQHLQN 219 I+ KE++ F E + F L YSGLR + + + +N Sbjct: 172 IENDKKAIKYLEKEELAHFLQVAKEKGLDNDYVFFSILAYSGLRAGELLALKWTDVDFEN 231 Query: 220 NIFSIKTQKT-------------------GTIITVELPDGFMKLL 245 N +IK KT G+I T+++ G MKLL Sbjct: 232 N--TIKITKTLYNPDNNSQHYHLLTPKTKGSIRTIKMDQGIMKLL 274 >gi|284920553|emb|CBG33615.1| integrase [Escherichia coli 042] Length = 356 Score = 39.7 bits (91), Expect = 0.74, Method: Compositional matrix adjust. Identities = 48/215 (22%), Positives = 83/215 (38%), Gaps = 11/215 (5%) Query: 25 FRKGHGRRIRLPYPHESTFIPAYMSALTGST--PKREYINSPRKKPTTLKWLISEYRKSA 82 F G RRI + + I A + +G P INS TL + Y K Sbjct: 35 FGLGRDRRIAI-----TEAIQANIELFSGHKHKPLTARINS--DNSVTLHSWLDRYEKIL 87 Query: 83 HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKHTPSSAIQFLTSM 140 + + I++ S I R D ITTK I + + + +SA +++ Sbjct: 88 ANRGIKQKTLINYMSKIKAIRRGLPDAPLENITTKEIAAMLNGYIDEGKAASAKLIRSTL 147 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL 200 F+ A+ + ++ NP + K + R E ++ +++ S RLA E + Sbjct: 148 SDAFREAIAEGHITTNPVAATRAAKSEVRRSRLTADEYLKIYQAAESSPCWLRLAMELAV 207 Query: 201 YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235 +G R D C + + ++ KTG I + Sbjct: 208 VTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAI 242 >gi|262383756|ref|ZP_06076892.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_33B] gi|298375888|ref|ZP_06985844.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_19] gi|262294654|gb|EEY82586.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_33B] gi|298266925|gb|EFI08582.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_19] Length = 302 Score = 39.7 bits (91), Expect = 0.74, Method: Compositional matrix adjust. Identities = 60/253 (23%), Positives = 106/253 (41%), Gaps = 35/253 (13%) Query: 99 FDQIIR--KSGDFDYRKITTKHIRSGVES---RKHTPSSAIQFLTSMRVLFKWAVRQEYV 153 F + +R + G FD +I + +RS + S K +P S + L+S++ FK+ +++ V Sbjct: 31 FQRYVREHREGVFDPGEIDSDFVRSWIVSLMDEKLSPVSVNRKLSSLKSFFKFLMKRGIV 90 Query: 154 AINPCLSVERPKRKTE---GIRPWTKEDMQQFKSFWS--EGSQPRLAFEFLLYSGLRCSD 208 + NP V PK K I+ E + F EG + RL E L +G+R S+ Sbjct: 91 SANPLRLVSGPKTKKPLPYFIKDSELEALLDGDGFDEDFEGVRNRLVIEMLYDTGMRRSE 150 Query: 209 SCRAGVQHLQNNIFSIKTQKTG---TIITVELPDGFMKL-LAMTPI-------GKETFFI 257 G++++ + +++ + TG + +G L LA T + E FF+ Sbjct: 151 LI--GIRNVDVDYEAMQVKVTGKRNKQRLIPFAEGLKNLMLAYTEVRDREVEAAGEWFFV 208 Query: 258 NNDKQKMNATQFSIWFKAKATKAGVN-------KSAHGVRKFSATISADAGATAHELMAT 310 + N Q S K ++ +S H +R AT + GA + + Sbjct: 209 -----RKNGNQLSTGIVYNIVKKQLSEIPMLAKRSPHVLRHSFATSMLNNGAELNAVKDL 263 Query: 311 YGWKTVDQAETYT 323 G ++ YT Sbjct: 264 LGHSSLASTSVYT 276 >gi|260866896|ref|YP_003233298.1| putative integrase [Escherichia coli O111:H- str. 11128] gi|257763252|dbj|BAI34747.1| putative integrase [Escherichia coli O111:H- str. 11128] gi|323179992|gb|EFZ65548.1| integrase [Escherichia coli 1180] Length = 358 Score = 39.7 bits (91), Expect = 0.76, Method: Compositional matrix adjust. Identities = 48/215 (22%), Positives = 83/215 (38%), Gaps = 11/215 (5%) Query: 25 FRKGHGRRIRLPYPHESTFIPAYMSALTGST--PKREYINSPRKKPTTLKWLISEYRKSA 82 F G RRI + + I A + +G P INS TL + Y K Sbjct: 37 FGLGRDRRIAI-----TEAIQANIELFSGHKHKPLTARINS--DNSVTLHSWLDRYEKIL 89 Query: 83 HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKHTPSSAIQFLTSM 140 + + I++ S I R D ITTK I + + + +SA +++ Sbjct: 90 ASRGIKQKTLINYMSKIKAIRRGLPDAPLEDITTKEIAAMLSGYIDEGKAASAKLIRSTL 149 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL 200 F+ A+ + ++ NP + K + R E ++ +++ S RLA E + Sbjct: 150 SDAFREAIAEGHITTNPVAATRAAKSEVRRSRLTADEYLKIYQAAESSPCWLRLAMELAV 209 Query: 201 YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235 +G R D C + + ++ KTG I + Sbjct: 210 VTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAI 244 >gi|297205885|ref|ZP_06923280.1| tyrosine recombinase XerD [Lactobacillus jensenii JV-V16] gi|297149011|gb|EFH29309.1| tyrosine recombinase XerD [Lactobacillus jensenii JV-V16] Length = 300 Score = 39.7 bits (91), Expect = 0.76, Method: Compositional matrix adjust. Identities = 39/208 (18%), Positives = 89/208 (42%), Gaps = 23/208 (11%) Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQP 192 +T++R +++ +RQ + ++P + ++ PK++ ++++++Q + + G + Sbjct: 77 ITTLRRFYRYLLRQHILVVDPLIQIDTPKQEKRLPLALSQKEVEQLLAQPDIKTTTGLRD 136 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--------TIITVELPDGFMK- 243 R E L +G+R S+ L ++ I+ G T + D ++K Sbjct: 137 RAILELLYATGMRVSELINLKEADLHTDLKIIRVLGKGSKERLVPVTDFALNWLDKYLKN 196 Query: 244 ----LLAMTPIGKETFFINNDKQKMNATQFSIW--FKAKATKAGVNK--SAHGVRKFSAT 295 L + + F+NN ++ T+ ++W K + A ++K + H +R AT Sbjct: 197 VRDPALLKKGVACDFLFLNNRAGQL--TRQAVWQSIKKYSKLAKIDKDITPHTLRHTFAT 254 Query: 296 ISADAGATAHELMATYGWKTVDQAETYT 323 + GA + G + + YT Sbjct: 255 HLLENGADLRVVQEILGHSDISTTQIYT 282 >gi|77412620|ref|ZP_00788901.1| site-specific recombinase, phage integrase family [Streptococcus agalactiae CJB111] gi|77161330|gb|EAO72360.1| site-specific recombinase, phage integrase family [Streptococcus agalactiae CJB111] Length = 368 Score = 39.7 bits (91), Expect = 0.76, Method: Compositional matrix adjust. Identities = 40/183 (21%), Positives = 76/183 (41%), Gaps = 27/183 (14%) Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 K++P+ A + +A R Y+ PC S++ PK K + WT ED+++ + + Sbjct: 134 KYSPNYAKGVWIRFKHCIGYAERLGYIDEFPCKSLDNPKGKRPDTKFWTLEDLKKVVATF 193 Query: 187 S----EGSQPRLAFEFLLYSGLRCSDS----------------CRAGVQHLQNNIFSIK- 225 E A ++GLR S+ ++ +++ N +F+ K Sbjct: 194 DLRDYEERHRFTAIWLYFFTGLRVSEGLSLIWSDIDFDKKLLHVQSTLEYEGNGVFTRKN 253 Query: 226 -TQKTGTIITVELPDGFMKLLA-----MTPIGKETFFINNDKQKMNATQFSIWFKAKATK 279 T+ + I +EL D + +L G +++ + + +N S K +A K Sbjct: 254 PTKTSAGIRWIELDDETLNVLLRWRSIQVENGDDSYVLARFGKPLNKCTLSRILKRQAKK 313 Query: 280 AGV 282 AGV Sbjct: 314 AGV 316 >gi|116873397|ref|YP_850178.1| integrase/recombinase [Listeria welshimeri serovar 6b str. SLCC5334] gi|116742275|emb|CAK21399.1| integrase/recombinase [Listeria welshimeri serovar 6b str. SLCC5334] Length = 297 Score = 39.7 bits (91), Expect = 0.76, Method: Compositional matrix adjust. Identities = 46/213 (21%), Positives = 88/213 (41%), Gaps = 24/213 (11%) Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191 S +++ S+R F + + ++ +P + +E PK+ + +D+++ S S+ S Sbjct: 70 SVARYIASLRSFFHYLMHDGKMSHDPMIQIETPKQAQSLPKVLNLDDVEKLLS-SSDIST 128 Query: 192 P-----RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-------------TII 233 P + E L +GLR ++ R + L ++ I+T G T++ Sbjct: 129 PLGLRDQAMMEILYATGLRVTELVRLKMDDLHLHMGFIQTIGKGDKERIIPLGKTATTVL 188 Query: 234 TVELPDGFMKLLAMTPIGKETF-FINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290 L + KL P + F F+N+ Q + F K A ++G+ K + H +R Sbjct: 189 EQYLEEARPKL--RRPKYRNDFVFLNHHGQGLTRQGFWKILKGIAKESGIEKPITPHTLR 246 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYT 323 AT + GA + G + + YT Sbjct: 247 HSFATHLLENGADLRSVQELLGHADISTTQIYT 279 >gi|56415803|ref|YP_152878.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197364733|ref|YP_002144370.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|56130060|gb|AAV79566.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197096210|emb|CAR61807.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 300 Score = 39.7 bits (91), Expect = 0.77, Method: Compositional matrix adjust. Identities = 45/215 (20%), Positives = 86/215 (40%), Gaps = 23/215 (10%) Query: 93 ISFESYFDQIIRKSGDF---DYRKITTKHIRS-GVESRKHT--PSSAIQFLTSMRVLFKW 146 ++++ D II +G+ +++ +RS V SR+ P+S L+++R F W Sbjct: 29 LNYQRQLDAIIALAGETGLKSWQQCDAAIVRSFAVRSRRKGLGPASLALRLSALRSFFDW 88 Query: 147 AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP-----RLAFEFLLY 201 V Q + NP V PK + +D+ + + + P R E + Sbjct: 89 LVSQGELKANPAKGVSAPKAPRHLPKNIDVDDVNRLLDI--DLNDPLAVRDRAMLEVMYG 146 Query: 202 SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG---------FMKLLAMTPIGK 252 +GLR S+ ++HL + + G+ LP G ++ L + + Sbjct: 147 AGLRLSELVGLDIKHLDLDTGEVWVMGKGS-KERRLPIGRNAVTWIEHWLDLRGLFASDE 205 Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAH 287 E F++ ++++A F K G+N H Sbjct: 206 EALFLSKLGKRISARNVQKRFAEWGIKQGLNSHVH 240 >gi|320654274|gb|EFX22329.1| Phage integrase family protein [Escherichia coli O55:H7 str. 3256-97 TW 07815] Length = 356 Score = 39.3 bits (90), Expect = 0.79, Method: Compositional matrix adjust. Identities = 48/215 (22%), Positives = 83/215 (38%), Gaps = 11/215 (5%) Query: 25 FRKGHGRRIRLPYPHESTFIPAYMSALTGST--PKREYINSPRKKPTTLKWLISEYRKSA 82 F G RRI + + I A + +G P INS TL + Y K Sbjct: 35 FGLGRDRRIAI-----TEAIQANIELFSGHKHKPLTTRINS--DNSVTLHSWLDRYEKIL 87 Query: 83 HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKHTPSSAIQFLTSM 140 + + I++ S I R D ITTK I + + + +SA +++ Sbjct: 88 ASRGIKQKTLINYMSKIKAIRRGLPDAPLEDITTKEIAAMLNGYIDEGKAASAKLIRSTL 147 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL 200 F+ A+ + ++ NP + K + R E ++ +++ S RLA E + Sbjct: 148 SDAFREAIAEGHITTNPVAATRAAKSEVRRSRLTADEYLKIYQAAESSPCWLRLAMELAV 207 Query: 201 YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235 +G R D C + + ++ KTG I + Sbjct: 208 VTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAI 242 >gi|257055983|ref|YP_003133815.1| site-specific recombinase XerD [Saccharomonospora viridis DSM 43017] gi|256585855|gb|ACU96988.1| site-specific recombinase XerD [Saccharomonospora viridis DSM 43017] Length = 354 Score = 39.3 bits (90), Expect = 0.79, Method: Compositional matrix adjust. Identities = 35/123 (28%), Positives = 55/123 (44%), Gaps = 16/123 (13%) Query: 105 KSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP 164 KS D YR + K G P S ++ T++R LF+WAV + YV ++P + V P Sbjct: 74 KSPDRRYR-VGVKIAEDGSTPPGRGPYSLARWFTAVRGLFRWAVDKGYVQVDPTVKVTPP 132 Query: 165 KRKTE------GIRPWTKEDMQQFKSFWSEG---SQPRLA------FEFLLYSGLRCSDS 209 + T G+R +++ + S G + RL+ L+ SG R S+ Sbjct: 133 RVPTRVGGTRVGLRLDEALTLREAPAVRSSGQLRADQRLSLRDEAILRLLVESGPRVSEL 192 Query: 210 CRA 212 C A Sbjct: 193 CGA 195 >gi|289596337|ref|YP_003483033.1| integrase family protein [Aciduliprofundum boonei T469] gi|289534124|gb|ADD08471.1| integrase family protein [Aciduliprofundum boonei T469] Length = 284 Score = 39.3 bits (90), Expect = 0.80, Method: Compositional matrix adjust. Identities = 44/210 (20%), Positives = 82/210 (39%), Gaps = 14/210 (6%) Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 RK++ +S ++R FK Y ++ ++ PKR + + +++++++ Sbjct: 67 RKYSKNSLYLATKAIRSYFK------YKNLDTAKNLSSPKRPRQMPKYLSEDEVKRLIEA 120 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN--IFSIKTQKTG----TIITVELPD 239 SE + L YSGLR S+ C ++ + N I + + K +++ + + Sbjct: 121 SSENPRDYAIISLLAYSGLRVSELCNLKIEDVDFNERIVYVHSGKGDKDRIVVVSPRVIE 180 Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATIS 297 L E F + K++ Q K A KAG+ K H +R AT Sbjct: 181 ALQNYLYTREDDMEYLFASQKSNKISRVQVFRIVKKYAEKAGIKKEVTPHVLRHTLATTL 240 Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGAD 327 G + G +V + YT D Sbjct: 241 LRRGVDIRFIQQFLGHSSVATTQIYTHVDD 270 >gi|215485788|ref|YP_002328219.1| predicted integrase [Escherichia coli O127:H6 str. E2348/69] gi|260854001|ref|YP_003227892.1| putative integrase [Escherichia coli O26:H11 str. 11368] gi|215263860|emb|CAS08198.1| predicted integrase [Escherichia coli O127:H6 str. E2348/69] gi|257752650|dbj|BAI24152.1| putative integrase [Escherichia coli O26:H11 str. 11368] gi|323155048|gb|EFZ41237.1| integrase [Escherichia coli EPECa14] Length = 356 Score = 39.3 bits (90), Expect = 0.81, Method: Compositional matrix adjust. Identities = 48/215 (22%), Positives = 83/215 (38%), Gaps = 11/215 (5%) Query: 25 FRKGHGRRIRLPYPHESTFIPAYMSALTGST--PKREYINSPRKKPTTLKWLISEYRKSA 82 F G RRI + + I A + +G P INS TL + Y K Sbjct: 35 FGLGRDRRIAI-----TEAIQANIELFSGHKHKPLTARINS--DNSVTLHSWLDRYEKIL 87 Query: 83 HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKHTPSSAIQFLTSM 140 + + I++ S I R D ITTK I + + + +SA +++ Sbjct: 88 ASRGIKQKTLINYMSKIKAIRRGLPDAPLEDITTKEIAAMLSGYIDEGKAASAKLIRSTL 147 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL 200 F+ A+ + ++ NP + K + R E ++ +++ S RLA E + Sbjct: 148 SDAFREAIAEGHITTNPVAATRAAKSEVRRSRLTADEYLKIYQAAESSPCWLRLAMELAV 207 Query: 201 YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235 +G R D C + + ++ KTG I + Sbjct: 208 VTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAI 242 >gi|138559|sp|P27078|VINT_BP434 RecName: Full=Integrase gi|215353|gb|AAA67900.1| integrase [Phage 434] Length = 356 Score = 39.3 bits (90), Expect = 0.81, Method: Compositional matrix adjust. Identities = 48/215 (22%), Positives = 83/215 (38%), Gaps = 11/215 (5%) Query: 25 FRKGHGRRIRLPYPHESTFIPAYMSALTGST--PKREYINSPRKKPTTLKWLISEYRKSA 82 F G RRI + + I A + +G P INS TL + Y K Sbjct: 35 FGLGRDRRIAI-----TEAIQANIELFSGHKHKPLTARINS--DNSVTLHSWLDRYEKIL 87 Query: 83 HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKHTPSSAIQFLTSM 140 + + I++ S I R D ITTK I + + + +SA +++ Sbjct: 88 ASRGIKQKTLINYMSKIKAIRRGLPDAPLEDITTKEIAAMLSGYIDEGKAASAKLIRSTL 147 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL 200 F+ A+ + ++ NP + K + R E ++ +++ S RLA E + Sbjct: 148 SDAFREAIAEGHITTNPVAATRAAKSEVRRSRLTADEYLKIYQAAESSPCWLRLAMELAV 207 Query: 201 YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235 +G R D C + + ++ KTG I + Sbjct: 208 VTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAI 242 >gi|256851002|ref|ZP_05556391.1| tyrosine recombinase XerD [Lactobacillus jensenii 27-2-CHN] gi|260661214|ref|ZP_05862128.1| tyrosine recombinase XerD [Lactobacillus jensenii 115-3-CHN] gi|282932045|ref|ZP_06337503.1| tyrosine recombinase XerD [Lactobacillus jensenii 208-1] gi|256616064|gb|EEU21252.1| tyrosine recombinase XerD [Lactobacillus jensenii 27-2-CHN] gi|260548151|gb|EEX24127.1| tyrosine recombinase XerD [Lactobacillus jensenii 115-3-CHN] gi|281303812|gb|EFA95956.1| tyrosine recombinase XerD [Lactobacillus jensenii 208-1] Length = 300 Score = 39.3 bits (90), Expect = 0.82, Method: Compositional matrix adjust. Identities = 39/208 (18%), Positives = 89/208 (42%), Gaps = 23/208 (11%) Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQP 192 +T++R +++ +RQ + ++P + ++ PK++ ++++++Q + + G + Sbjct: 77 ITTLRRFYRYLLRQHILVVDPLIQIDTPKQEKRLPLALSQKEVEQLLAQPDIKTTTGLRD 136 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--------TIITVELPDGFMK- 243 R E L +G+R S+ L ++ I+ G T + D ++K Sbjct: 137 RAILELLYATGMRVSELINLKEADLHTDLKIIRVLGKGSKERLVPVTDFALSWLDKYLKN 196 Query: 244 ----LLAMTPIGKETFFINNDKQKMNATQFSIW--FKAKATKAGVNK--SAHGVRKFSAT 295 L + + F+NN ++ T+ ++W K + A ++K + H +R AT Sbjct: 197 VRDPALLKKGVACDFLFLNNRAGQL--TRQAVWQSIKKYSKLAKIDKDITPHTLRHTFAT 254 Query: 296 ISADAGATAHELMATYGWKTVDQAETYT 323 + GA + G + + YT Sbjct: 255 HLLENGADLRVVQEILGHSDISTTQIYT 282 >gi|228950418|ref|ZP_04112578.1| DNA integration/recombination/invertion protein [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228809233|gb|EEM55694.1| DNA integration/recombination/invertion protein [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 369 Score = 39.3 bits (90), Expect = 0.82, Method: Compositional matrix adjust. Identities = 26/120 (21%), Positives = 57/120 (47%), Gaps = 5/120 (4%) Query: 93 ISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVL---FKWAV 148 + + ++ +Q +I G K+ HI+ ++ + L R+L AV Sbjct: 86 VGYRAFLNQHVIPSIGMVALHKLNVMHIQKCYKTAIDKGIANNSVLLMHRILKSALNLAV 145 Query: 149 RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSD 208 +Q ++ NP E PK++ I+ WT+E++++F S+ S+ + + + +G+R + Sbjct: 146 KQNIISRNPADFAEIPKKERTSIQTWTEEEVKKF-LLHSQESRYHIGYLLAITTGMRMGE 204 >gi|37525093|ref|NP_928437.1| site-specific tyrosine recombinase XerC [Photorhabdus luminescens subsp. laumondii TTO1] gi|37527552|ref|NP_930896.1| site-specific tyrosine recombinase XerC [Photorhabdus luminescens subsp. laumondii TTO1] gi|36784519|emb|CAE13419.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] gi|36786987|emb|CAE16061.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 370 Score = 39.3 bits (90), Expect = 0.82, Method: Compositional matrix adjust. Identities = 45/208 (21%), Positives = 76/208 (36%), Gaps = 20/208 (9%) Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR-----PWTKEDMQQFKSFWSEGSQ 191 L ++V FKW +Q + NP +E P+ + R T++ + Q +G + Sbjct: 109 LEPLKVWFKWLTKQNLILANPAADIELPRLEKHLPRYILTIDETEQILAQPDLTTLQGIR 168 Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL------- 244 R E L +G+R + R V + ++ ++ LP G L Sbjct: 169 DRALMELLWSTGMRRGELTRLDVYSVDGKRKTVTIRQGKGNKDRVLPLGERALSWLQRYQ 228 Query: 245 ------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATI 296 L + P K F + + A S A G+ K + H R AT Sbjct: 229 QQVRPQLIVNPDVKALFVAMDGLDGLQANGISNLVTAYINAVGIEKKGACHLFRHAMATQ 288 Query: 297 SADAGATAHELMATYGWKTVDQAETYTK 324 + GA + A G +V+ + YT+ Sbjct: 289 MLENGADLRWIQAMLGHASVESTQVYTQ 316 >gi|293404020|ref|ZP_06648014.1| integrase [Escherichia coli FVEC1412] gi|298379800|ref|ZP_06989405.1| integrase [Escherichia coli FVEC1302] gi|291428606|gb|EFF01631.1| integrase [Escherichia coli FVEC1412] gi|298279498|gb|EFI21006.1| integrase [Escherichia coli FVEC1302] Length = 293 Score = 39.3 bits (90), Expect = 0.83, Method: Compositional matrix adjust. Identities = 32/145 (22%), Positives = 60/145 (41%), Gaps = 2/145 (1%) Query: 93 ISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQ 150 I++ S I R D ITTK I + + + +SA +++ F+ A+ + Sbjct: 35 INYMSKIKAIRRGLPDVPLEDITTKEIAAMLNGYIDEGKAASAKLIRSTLSDAFREAIAE 94 Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSC 210 ++ NP + K + R E ++ +++ S RLA E + +G R D C Sbjct: 95 GHITTNPVAATRAAKSEVRRSRLTADEYLKIYQAAESSPCWLRLAMELAVVTGQRVGDLC 154 Query: 211 RAGVQHLQNNIFSIKTQKTGTIITV 235 + + ++ KTG I + Sbjct: 155 EMKWSDIVDGYLYVEQSKTGVKIAI 179 >gi|194398664|ref|YP_002038654.1| phage integrase family site-specific recombinase [Streptococcus pneumoniae G54] gi|194358331|gb|ACF56779.1| site-specific recombinase, phage integrase family [Streptococcus pneumoniae G54] Length = 377 Score = 39.3 bits (90), Expect = 0.83, Method: Compositional matrix adjust. Identities = 32/140 (22%), Positives = 66/140 (47%), Gaps = 9/140 (6%) Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITT--KHIRSGVESRKHTPSSAI- 134 +RK+++ + N + YF ++ G Y I +H+R V P S Sbjct: 78 HRKASYINTQDNNYNKHIKDYFS-MVDNVGKLTYEDIYQFREHLRQKVAKNSDKPLSTNT 136 Query: 135 --QFLTSMRVLFKWAVRQEYVAINPCLSVER-PKRKTEGIRPWTKEDMQQFKSFWS-EGS 190 + + ++ +F +R+ Y + NP +++ P KT+ ++ WT ++ Q+F + + E Sbjct: 137 INKIMILLKKIFDVGLRKGYYSSNPAKLIKKLPIEKTK-MQFWTVKEFQKFLTLFEPEEY 195 Query: 191 QPRLAFEFLLYSGLRCSDSC 210 +L F L ++GLR ++ Sbjct: 196 NIKLLFTVLFFTGLRLGEAL 215 >gi|189502574|ref|YP_001958291.1| hypothetical protein Aasi_1239 [Candidatus Amoebophilus asiaticus 5a2] gi|189498015|gb|ACE06562.1| hypothetical protein Aasi_1239 [Candidatus Amoebophilus asiaticus 5a2] Length = 299 Score = 39.3 bits (90), Expect = 0.83, Method: Compositional matrix adjust. Identities = 47/211 (22%), Positives = 88/211 (41%), Gaps = 18/211 (8%) Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ----QFKSFW 186 +S + L+++R +++ + + Y+ +P VERP + + +++ Sbjct: 71 TSQARILSAIRGFYQFLLLEGYLETDPTKLVERPVLGRKLPHTLSVHEIEILFGTIDHST 130 Query: 187 SEGSQPRLAFEFLLYSGLRCSD--SCRAGVQHLQNNIFSI--KTQKTGTIITVELPDGFM 242 + G + R E L SGLR S+ S R + + + K K + ++ ++ Sbjct: 131 AMGMRNRAMLETLYSSGLRVSELISLRMSDIYFEEMFLQVLGKGNKQRLVPIGKIALKYL 190 Query: 243 KLLAMT-----PIGKET---FFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKF 292 ++ PI KE F+N KM+ + K A+KAG+ + S H R Sbjct: 191 RIYIEEVRIHFPIKKEAANCVFLNKRGSKMSRVMVFLIIKELASKAGLQQEISPHTFRHS 250 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYT 323 AT + GA + A G +++ E YT Sbjct: 251 FATHLVEGGADLRAVQAMLGHESITTTEIYT 281 >gi|319641868|ref|ZP_07996545.1| transposase [Bacteroides sp. 3_1_40A] gi|317386541|gb|EFV67443.1| transposase [Bacteroides sp. 3_1_40A] Length = 407 Score = 39.3 bits (90), Expect = 0.84, Method: Compositional matrix adjust. Identities = 51/221 (23%), Positives = 87/221 (39%), Gaps = 25/221 (11%) Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 S+K ++A ++L + + + + A+ + ++ +P L + K E P ED + K Sbjct: 178 SKKCCHNTATKYLKNFKKIIRIALAKGWMKNDPFLEIRFSLDKVE---PDFLEDSEIRKL 234 Query: 185 FWSEGSQPRLA-----FEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-----TQKTGTIIT 234 E PRL F F ++GL SD G +H+ + ++ QKT + Sbjct: 235 ISKEIDIPRLGQVRDIFVFCCFTGLAFSDIHGLGKEHIVEDSNGVRWIRKGRQKTKIMCN 294 Query: 235 VELPDGFMKLLAMTPIGKE-----TFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAH 287 + L + +K+L + F QKMNA + K A G+ K + H Sbjct: 295 IPLMEVPLKILEKYSTNEYCRKHGVLFPVLCNQKMNA-----YLKELADICGIKKTLTTH 349 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 R AT + G + + G V Y + DR Sbjct: 350 VARHTFATFALANGVSIESVAKMLGHTNVQMTRHYARVLDR 390 >gi|227891778|ref|ZP_04009583.1| phage integrase [Lactobacillus salivarius ATCC 11741] gi|227866437|gb|EEJ73858.1| phage integrase [Lactobacillus salivarius ATCC 11741] Length = 381 Score = 39.3 bits (90), Expect = 0.84, Method: Compositional matrix adjust. Identities = 52/250 (20%), Positives = 105/250 (42%), Gaps = 42/250 (16%) Query: 107 GDFDYRKITTKHIRSGV-ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK 165 D KIT +H + V ++ TP + ++ ++ +A+R + NP L V +PK Sbjct: 106 NDMYVDKITVRHCQDFVSKAFVTTPKGYVYLISIVKNTLDYALRLGMIESNPMLYVIKPK 165 Query: 166 RKT----EGIRPWTKEDMQQFKSFWSEGSQPRLA-FEFLLYSGLRCSDSCRAGVQH---L 217 ++ + + K+++++F +Q + F L YSG+R + C A H Sbjct: 166 KQATISDKHDNFYNKDELKKFLEVAKYYNQEKYTIFRLLAYSGIRIGE-CLALTWHDLDY 224 Query: 218 QNNIFSI----------------KTQKTGTIITVELP-------------DGFMKLLAMT 248 +NN +I KT+ + +I++++ +K + + Sbjct: 225 KNNTITINKTLARTDKGITIQTPKTKASNRVISLDVETIQILKSWQLEQRKQLLK-IGIN 283 Query: 249 PIGKETFFINNDKQK-MNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHE 306 + K N++K + ++ + K A KAG++ ++HG R AT+ +G + Sbjct: 284 SMNKHQLIFNSNKNSFIFSSVITYDIKQIAKKAGIHPITSHGFRHTHATLLFASGMDIKQ 343 Query: 307 LMATYGWKTV 316 + A G V Sbjct: 344 VQARLGHSKV 353 >gi|256822057|ref|YP_003146020.1| tyrosine recombinase XerD [Kangiella koreensis DSM 16069] gi|256795596|gb|ACV26252.1| tyrosine recombinase XerD [Kangiella koreensis DSM 16069] Length = 295 Score = 39.3 bits (90), Expect = 0.85, Method: Compositional matrix adjust. Identities = 45/237 (18%), Positives = 91/237 (38%), Gaps = 53/237 (22%) Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 +++++ S +FL+S R +++ ++ + ++P ++ PK + + +++++ S Sbjct: 62 TKQYSSRSTARFLSSARKFYRYLIQSNQIKVDPTQQIDSPKIQPPVPKSLSEDEVDSLLS 121 Query: 185 ----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240 + G + + E L SGLR ++ + S++ + G G Sbjct: 122 QPDLETALGLRDKAMLELLYSSGLRITE------------LISVEVNQIG------FQQG 163 Query: 241 FMKLLA------MTPIGKET-----------------------FFINNDKQKMNATQFSI 271 M+++ + PIG+E F++ Q+M F Sbjct: 164 VMRVIGKGNKERLVPIGEEALQAISLYIRHGRAELANEKVCDWLFLSTRGQRMTRQTFWH 223 Query: 272 WFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 K A AG+ K S H +R AT + GA L G + + YT A Sbjct: 224 RIKLYAKTAGIRKHLSPHTLRHAFATHLLNHGADLRTLQMLLGHSDLSTTQIYTHVA 280 >gi|284007611|emb|CBA73220.1| phage integrase [Arsenophonus nasoniae] Length = 336 Score = 39.3 bits (90), Expect = 0.86, Method: Compositional matrix adjust. Identities = 41/163 (25%), Positives = 67/163 (41%), Gaps = 11/163 (6%) Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ-PRLAFEFLLYS 202 F+ A+ + INP S + PK K + R + ED + G A + L + Sbjct: 139 FREAISLGLIQINPVTSTKTPKIKIQRAR-LSLEDFNTILGLINNGHHWLTHAMKLALVT 197 Query: 203 GLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL-LAMT---PIGKETFFIN 258 G R SD + + + + I QKTG+ I + L + L+ T + F IN Sbjct: 198 GQRVSDVSKIKYKDIHDGKLWIIQQKTGSKIAIPLDIELYGIKLSKTIADCVNNSEFVIN 257 Query: 259 NDKQKMNATQFSIWFK-----AKATKAGVNKSAHGVRKFSATI 296 N+ K+ + S F+ ++ G S H +R SA + Sbjct: 258 NNGNKITVERISKEFRRFRDISQLNWVGEPPSFHEIRSLSARL 300 >gi|237746680|ref|ZP_04577160.1| site specific integrase/recombinase [Oxalobacter formigenes HOxBLS] gi|229378031|gb|EEO28122.1| site specific integrase/recombinase [Oxalobacter formigenes HOxBLS] Length = 326 Score = 39.3 bits (90), Expect = 0.86, Method: Compositional matrix adjust. Identities = 57/279 (20%), Positives = 107/279 (38%), Gaps = 43/279 (15%) Query: 87 LAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH----TPSSAIQFLTSMRV 142 L+ N+ S+ Q+ +G+ ++++ IR V SR H +P S + L++ R Sbjct: 24 LSGNTLDSYRRDLAQLTEMAGETGLNRLSSTDIRRFV-SRLHASGLSPRSIGRKLSAWRG 82 Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW------SEGSQP---- 192 F+W V + ++ NP + PK+ + + +D + S S Q Sbjct: 83 FFQWLVDEALLSTNPAEDIHAPKKSKPLPKALSVDDAVRLVSSGPADTNASSAGQAAALC 142 Query: 193 -RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS----IKTQKTGTIITVE------LPDGF 241 R FE L SGLR S+ +Q ++ + I + +T + +P G Sbjct: 143 DRAMFELLYSSGLRVSELTGLDIQAVRQAGYVSAGWIDLNEKEVTVTGKGNKTRIVPAGD 202 Query: 242 MKLLAM---------------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAG--VNK 284 + A+ P F+N+ ++++ Q + KA A + G VN Sbjct: 203 AAITAVRNWLAARDNLVHPEALPRDAFALFVNSRGKRISPRQVQLRLKAHAKRLGLPVNV 262 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 H +R A+ + + G ++ + YT Sbjct: 263 HPHVLRHSFASHILQSSGDLRAVQEMLGHSSIASTQIYT 301 >gi|150026059|ref|YP_001296885.1| tyrosine recombinase XerD [Flavobacterium psychrophilum JIP02/86] gi|149772600|emb|CAL44083.1| Tyrosine recombinase XerD [Flavobacterium psychrophilum JIP02/86] Length = 299 Score = 39.3 bits (90), Expect = 0.86, Method: Compositional matrix adjust. Identities = 45/216 (20%), Positives = 84/216 (38%), Gaps = 18/216 (8%) Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 S+ P S + ++ ++ F + + ++Y NP +E P+ + ED+ + + Sbjct: 64 SKSVNPRSQARTISGLKSFFSYLIFEDYRPDNPLALIETPRLGRKLPDTLNIEDIDKLIA 123 Query: 185 FW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT----IITVE 236 +EG + R E L GLR S+ + L IK G + E Sbjct: 124 AINLTTNEGERNRAMLETLYACGLRVSELVSLKISDLFFAEGFIKITGKGNKQRFVPISE 183 Query: 237 LPDGFMK--------LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SA 286 +++ LL++ ++T F+N +++ K A + G+NK S Sbjct: 184 YTQKYIEIYKNTDRNLLSIQKGHEDTLFLNRRGRQLTRAMIFTIIKNLAVEIGLNKVISP 243 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 H R AT + GA + G +++ E Y Sbjct: 244 HTFRHSFATHLLENGADLRSIQLMLGHESITTTEIY 279 >gi|121594170|ref|YP_986066.1| phage integrase family protein [Acidovorax sp. JS42] gi|120606250|gb|ABM41990.1| phage integrase family protein [Acidovorax sp. JS42] Length = 538 Score = 39.3 bits (90), Expect = 0.86, Method: Compositional matrix adjust. Identities = 58/220 (26%), Positives = 93/220 (42%), Gaps = 38/220 (17%) Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPC--LSVERPKRKTEGIRPWTKEDMQQFKS-- 184 T ++A L S+R LF A + ++ NP LSVE +++EG PWTK+++ S Sbjct: 277 TATTADNILVSLRALFNVARDRGWLTSNPLERLSVEIGGKESEGREPWTKDELGLIFSDP 336 Query: 185 FWSEGSQP-------RLAFEFLL---YSGLRCSD---------SCRAGVQHLQNNIFSIK 225 W++ + P A+ L Y+G R ++ + G + + + + Sbjct: 337 VWTQHAIPIDKKAGKEAAYWIPLIACYTGARLTEIAQLWTDDVATEPGKETFEFRADAQR 396 Query: 226 TQK---TGTIITVEL-PD----GFMKLLAMTPIGKETFFINNDKQKMNAT--QFSIWFKA 275 QK +G+ V + P+ GF + P G + F + K+ N QF WF + Sbjct: 397 DQKLKNSGSWRAVPMHPELIRLGFCDYVQSLPKG--SLFPHLPKEGKNGAGGQFGKWFGS 454 Query: 276 KATKAGVN---KSAHGVRKFSATISADAGATAHELMATYG 312 + G KS H R AT AGAT + A G Sbjct: 455 FKSAKGFTSPAKSFHSFRHLVATELRLAGATDAQADAITG 494 >gi|325103601|ref|YP_004273255.1| integrase family protein [Pedobacter saltans DSM 12145] gi|324972449|gb|ADY51433.1| integrase family protein [Pedobacter saltans DSM 12145] Length = 389 Score = 39.3 bits (90), Expect = 0.86, Method: Compositional matrix adjust. Identities = 54/218 (24%), Positives = 86/218 (39%), Gaps = 20/218 (9%) Query: 118 HIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177 H+R V+ KH AI S+ + AV + NP + K P + Sbjct: 165 HLRK-VKKLKHNSIQAIH--VSINGFIREAVECKVNVENPYKKFKIKAYKRGKRDPLEID 221 Query: 178 DMQQFKSFWSEGSQPRLAFEFL---LYS---GLRCSDSCRAGVQHLQNNIFSIKTQKT-- 229 ++++ K + + E L L+S GLR SD+ ++++N + +I T K Sbjct: 222 ELKRLKHLYKAQHLEEIQQEVLRKYLFSCETGLRISDNNALDYENIENKVLTINTVKGES 281 Query: 230 -GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSA 286 G ++TV L + L+ + + F N Q +N K A+KA + N + Sbjct: 282 FGVVVTVPLTKYAISLIDIKK-RRGPVFRNISDQVVNRN-----LKVIASKAEIYRNLTF 335 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H R AT DAG A L G + Y K Sbjct: 336 HSSRDTMATNFIDAGGNAETLKELLGHSDIKTTMIYVK 373 >gi|311030138|ref|ZP_07708228.1| site-specific tyrosine recombinase XerC [Bacillus sp. m3-13] Length = 302 Score = 39.3 bits (90), Expect = 0.86, Method: Compositional matrix adjust. Identities = 45/222 (20%), Positives = 85/222 (38%), Gaps = 21/222 (9%) Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 + +K+ S + +S+R +K+ +R+E V NP SV PK++ + E++ + Sbjct: 63 LHQKKYARKSVARKTSSLRSFYKFLLREEKVEQNPFTSVSLPKQEKRLPQFLYSEELDKL 122 Query: 183 KSFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT------- 231 + G + + E L +G+R S+ C + + + +I G Sbjct: 123 FAVSDLETPLGQRNQAILELLYATGIRISECCHIQIHDIDFQVGTILVTGKGNKQRYIPF 182 Query: 232 ------IITVELPDGFMKLLA--MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG-- 281 I + L DG LL TP + F+N + + +A Sbjct: 183 GSFAQDAIKIYLEDGRKSLLEKQKTPNSTKHLFLNFRGGALTPRGVRLILNDMVQQACST 242 Query: 282 VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 ++ S H +R AT + GA + G ++ + YT Sbjct: 243 LHISPHMLRHTFATHMLNEGADLRVVQELLGHASLSSTQIYT 284 >gi|304386123|ref|ZP_07368463.1| site-specific recombinase [Pediococcus acidilactici DSM 20284] gi|304327850|gb|EFL95076.1| site-specific recombinase [Pediococcus acidilactici DSM 20284] Length = 396 Score = 39.3 bits (90), Expect = 0.87, Method: Compositional matrix adjust. Identities = 50/226 (22%), Positives = 86/226 (38%), Gaps = 39/226 (17%) Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP----WTKEDMQQFKSFWS--E 188 ++L ++F +A+R EYV NPC V P+ + + WT++++ F + + Sbjct: 145 KWLNYASMIFDYALRAEYVGRNPCTLVTMPRVQEQAGEKLENFWTRDELNTFFDYVTPER 204 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT------GTII--------- 233 + F L YSG+R + + + +++ KT G +I Sbjct: 205 DVEQFTMFRVLAYSGIRKGELLALTWKDINFEDNTLRVNKTLTQGLGGKLIVQPPKSRAG 264 Query: 234 --TVELPDGFMKLLAM-TPIGKETFF-----INNDKQKM---NATQF------SIWFKAK 276 T++L D M+ L + +ETF NN Q + N F + W Sbjct: 265 RRTIDLDDSTMRYLRQWKGVQRETFLGMGFNTNNVDQLVFASNRNHFRSMNTPTKWLNKA 324 Query: 277 ATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321 G+ S HG R A++ +G E G D + T Sbjct: 325 IKATGLKHISIHGFRHTHASLLYQSGVGLKETQQRLGHSRADSSVT 370 >gi|153810889|ref|ZP_01963557.1| hypothetical protein RUMOBE_01273 [Ruminococcus obeum ATCC 29174] gi|149833285|gb|EDM88367.1| hypothetical protein RUMOBE_01273 [Ruminococcus obeum ATCC 29174] Length = 280 Score = 39.3 bits (90), Expect = 0.87, Method: Compositional matrix adjust. Identities = 46/232 (19%), Positives = 99/232 (42%), Gaps = 27/232 (11%) Query: 99 FDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPC 158 DQI K+ D + + K +SG ++ + + ++++R + + ++E + NP Sbjct: 9 LDQI--KAVDLEEYQEYLKLYQSGDKTETNGERGLKRKISALRSFYAYYYKREMIHTNPT 66 Query: 159 LSVERPKRKTEGIRPWTKEDMQ---------------QFKSFWSEGSQPRLAF-EFLLYS 202 + ++ PK + I +++ Q + F+ + + LA LL + Sbjct: 67 VLIDVPKIHEKSIIRLDTDEVAMLLDYIEHCGDTLTGQKRVFYEKTKERDLAIVTLLLGT 126 Query: 203 GLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINND 260 G+R S+ ++ + +NN + T+K G + V K L K + Sbjct: 127 GIRVSECVGLDIEDVDFKNNGIKV-TRKGGNEMVVYFGPEVEKAL------KRYLEVREG 179 Query: 261 KQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYG 312 + + ++++ A+ + GV + V+K+S I+ T H+L +TYG Sbjct: 180 ITPLAGHEHALFYSAQRKRMGVQAVENMVKKYSRQITTTKKITPHKLRSTYG 231 >gi|300173433|ref|YP_003772599.1| tyrosine recombinase XerD [Leuconostoc gasicomitatum LMG 18811] gi|299887812|emb|CBL91780.1| tyrosine recombinase XerD [Leuconostoc gasicomitatum LMG 18811] Length = 298 Score = 39.3 bits (90), Expect = 0.88, Method: Compositional matrix adjust. Identities = 53/237 (22%), Positives = 96/237 (40%), Gaps = 30/237 (12%) Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-- 188 +S I+ +TS+R F + +++ + NP V PK+ T ++ + +E Sbjct: 71 NSVIRMVTSLRKFFGYLLQEGLILHNPMTDVRPPKKAEHLPSVLTVAEIDALLAVPTETT 130 Query: 189 --GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT---IITV-ELPDGFM 242 G + R E L +GLR S+ + L + I+T G II + E+ ++ Sbjct: 131 PLGVRNRTLIEVLYATGLRVSELVNLKMSDLHLQLGLIQTIGKGDKERIIPIGEVAADWL 190 Query: 243 -------KLLAMTPIGKETFFINNDKQKMNATQFSIW--FKAKATKAGVNK--SAHGVRK 291 +LL + G E+ F+ + + ++ +W K AG+ K S H +R Sbjct: 191 EKYFSNSRLLLLK--GNESPFVFLNDRGNQLSRQGVWKIIKKLVLLAGITKDVSPHTLRH 248 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348 AT + GA + G + + YT + +R+S V D+ P Sbjct: 249 SFATHILENGADLRIVQELLGHADISTTQIYTHIS---------KKRLSEVYDNFHP 296 >gi|58337257|ref|YP_193842.1| integrase-recombinase [Lactobacillus acidophilus NCFM] gi|227903842|ref|ZP_04021647.1| integrase-recombinase [Lactobacillus acidophilus ATCC 4796] gi|58254574|gb|AAV42811.1| integrase-recombinase [Lactobacillus acidophilus NCFM] gi|227868729|gb|EEJ76150.1| integrase-recombinase [Lactobacillus acidophilus ATCC 4796] Length = 301 Score = 39.3 bits (90), Expect = 0.89, Method: Compositional matrix adjust. Identities = 44/201 (21%), Positives = 85/201 (42%), Gaps = 23/201 (11%) Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQFKSFWSEGSQPRLAFEFL 199 ++W RQ +NP L ++ PK++ + T+++ + Q + G + + E L Sbjct: 85 YQWLARQNIQKLNPMLEIDLPKKEHKLPIALTQDEVVNLLDQPNTKQKLGLRDKAILETL 144 Query: 200 LYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT------IITVELP-----DGFMKLLAMT 248 +G+R S+ +Q L ++ ++ G I +V L + ++ + Sbjct: 145 YATGMRVSELINLKLQDLHEDLGLVRVLGKGAKERLIPISSVALDWLKKYEKQVRDPLIL 204 Query: 249 PIGK--ETFFINNDKQKMNATQFSIW--FKAKATKAGVNKSA--HGVRKFSATISADAGA 302 +GK E F+NN +++ T+ +IW K AG+ K H +R AT + GA Sbjct: 205 NVGKDDEHIFLNNRGKQL--TRQAIWQMIKKYCQLAGIAKDVTPHTLRHTFATHLLENGA 262 Query: 303 TAHELMATYGWKTVDQAETYT 323 + G + + YT Sbjct: 263 DLRVVQEILGHSDISTTQIYT 283 >gi|37527560|ref|NP_930904.1| site-specific tyrosine recombinase XerC [Photorhabdus luminescens subsp. laumondii TTO1] gi|37527568|ref|NP_930912.1| site-specific tyrosine recombinase XerC [Photorhabdus luminescens subsp. laumondii TTO1] gi|36786995|emb|CAE16069.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] gi|36787003|emb|CAE16077.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 376 Score = 39.3 bits (90), Expect = 0.89, Method: Compositional matrix adjust. Identities = 45/208 (21%), Positives = 76/208 (36%), Gaps = 20/208 (9%) Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR-----PWTKEDMQQFKSFWSEGSQ 191 L ++V FKW +Q + NP +E P+ + R T++ + Q +G + Sbjct: 109 LEPLKVWFKWLTKQNLILANPAADIELPRLEKHLPRYILTIDETEQILAQPDLTTLQGIR 168 Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL------- 244 R E L +G+R + R V + ++ ++ LP G L Sbjct: 169 DRALMELLWSTGMRRGELTRLDVYSVDGKRKTVTIRQGKGNKDRVLPLGERALSWLQRYQ 228 Query: 245 ------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATI 296 L + P K F + + A S A G+ K + H R AT Sbjct: 229 QQVRPQLIVNPDVKALFVAMDGLDGLQANGISNLVTAYINAVGIEKKGACHLFRHAMATQ 288 Query: 297 SADAGATAHELMATYGWKTVDQAETYTK 324 + GA + A G +V+ + YT+ Sbjct: 289 MLENGADLRWIQAMLGHASVESTQVYTQ 316 >gi|238920128|ref|YP_002933643.1| site-specific recombinase, phage integrase family [Edwardsiella ictaluri 93-146] gi|238869697|gb|ACR69408.1| site-specific recombinase, phage integrase family [Edwardsiella ictaluri 93-146] Length = 336 Score = 39.3 bits (90), Expect = 0.90, Method: Compositional matrix adjust. Identities = 28/104 (26%), Positives = 50/104 (48%), Gaps = 1/104 (0%) Query: 59 EYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH 118 E + + R TTL L+ + KSA + LAV ++ + Y +I+ G I +H Sbjct: 51 EALINERPDTTTLAGLVERFLKSADFFGLAVETQKDYHKYSQKILSVFGKMPPDAIRPEH 110 Query: 119 IRSGVESRK-HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV 161 +R ++ R + + A + + M +++WA + YV NP V Sbjct: 111 VRRYMDKRGLRSHTQANREKSFMSRVYRWAYERGYVKGNPTKGV 154 >gi|170020889|ref|YP_001725843.1| lambda integrase [Escherichia coli ATCC 8739] gi|169755817|gb|ACA78516.1| lambda integrase [Escherichia coli ATCC 8739] Length = 356 Score = 39.3 bits (90), Expect = 0.90, Method: Compositional matrix adjust. Identities = 62/295 (21%), Positives = 111/295 (37%), Gaps = 35/295 (11%) Query: 25 FRKGHGRRIRLPYPHESTFIPAYMSALTGST--PKREYINSPRKKPTTLKWLISEYRKSA 82 F G RRI + + I A + +G P INS TL + Y K Sbjct: 35 FGLGRDRRIAI-----TEAIQANIELFSGHKHKPLTARINS--DNSVTLHSWLDRYEKIL 87 Query: 83 HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKHTPSSAIQFLTSM 140 + + I++ S I R D ITTK I + + + +SA +++ Sbjct: 88 ASRGIKQKTLINYMSKIKAIRRGLPDAPLEDITTKEIAAMLNGYIDEGKAASAKLIRSTL 147 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL 200 F+ A+ + ++ NP + K + R E ++ +++ S RLA E + Sbjct: 148 SDAFREAMAEGHITTNPVAATRAAKSEVRRSRLTADEYLKIYQAAESSPCWLRLAMELAV 207 Query: 201 YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV--------------ELPDGFMKLLA 246 +G R D C + + ++ KTG I + E D K+L Sbjct: 208 VTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAIPTTLHVDALGISMKETLDKCKKIL- 266 Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-----KSAHGVRKFSATI 296 G ET + ++ +++ S +F +G++ + H +R SA + Sbjct: 267 ----GGETIIASTRREPLSSGTVSRYFMRARKASGLSFEGDPPTFHELRSLSARL 317 >gi|237654487|ref|YP_002890801.1| tyrosine recombinase XerC [Thauera sp. MZ1T] gi|237625734|gb|ACR02424.1| tyrosine recombinase XerC [Thauera sp. MZ1T] Length = 304 Score = 39.3 bits (90), Expect = 0.91, Method: Compositional matrix adjust. Identities = 49/237 (20%), Positives = 89/237 (37%), Gaps = 36/237 (15%) Query: 110 DYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169 D R+ + G + R S + L++ R ++W VR+ V INP L + PK + Sbjct: 61 DIRRFVARLHGEGQQGR-----SIARHLSAWRGFYRWLVREHGVRINPALGIRPPKSPST 115 Query: 170 GIRPWTKEDMQQFKSFWSEGSQPRL------AFEFLLYSGLRCSDSCRAGVQ---HLQNN 220 R + E Q + Q L FE SGLR ++ + L Sbjct: 116 LPRVLSPE---QANALLDPEPQNLLEIRDIAMFELFYSSGLRVAELAGLDIDSGLDLAEG 172 Query: 221 IFSI--KTQKTGTIITVELPDGFMKLLAMTP----------IGKETFFINNDKQKMNATQ 268 + ++ K Q+ T+ P G + A+ P G+ F+ D +++ Sbjct: 173 LVTVTGKRQRQRTV-----PVGGKAIAALRPWLEIRAGLAAAGERALFVTRDGHRLSTRG 227 Query: 269 FS--IWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 + + +A+A GV+ H +R A+ + + G ++ + YT Sbjct: 228 IASRLGTRAQALGLGVHVHPHMLRHSFASHLLQSSGDLRAVQELLGHASIRSTQIYT 284 >gi|149372788|ref|ZP_01891809.1| site-specific recombinase [unidentified eubacterium SCB49] gi|149354485|gb|EDM43050.1| site-specific recombinase [unidentified eubacterium SCB49] Length = 299 Score = 39.3 bits (90), Expect = 0.91, Method: Compositional matrix adjust. Identities = 50/212 (23%), Positives = 79/212 (37%), Gaps = 18/212 (8%) Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK--RKTEGIRPWTKEDM--QQFKSF 185 PSS + ++ ++ F + V +EY NP +E PK RK + D+ + Sbjct: 69 PSSQSRVISGLKGFFNYLVFEEYRTTNPLELMESPKIGRKLPDTLSEKEIDLLISEIDLS 128 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKL 244 +G + R E L GLR S+ + L IK T K V + D +K Sbjct: 129 SPQGERNRAILETLYGCGLRVSEIINLKISDLFFEEGFIKVTGKGDKERFVPIGDNTIKF 188 Query: 245 L-----------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRK 291 + + P +T F+N + + K K G+ N S H R Sbjct: 189 INIYRNEIRVHEPIKPEASDTLFLNRRGKGLTRAMIFTIIKRLLEKTGIQKNVSPHTFRH 248 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYT 323 AT + GA + G +++ E YT Sbjct: 249 SFATHLLERGADLRAIQQMLGHESITTTEIYT 280 >gi|42519008|ref|NP_964938.1| integrase/recombinase XerD [Lactobacillus johnsonii NCC 533] gi|41583295|gb|AAS08904.1| integrase/recombinase XerD [Lactobacillus johnsonii NCC 533] Length = 296 Score = 39.3 bits (90), Expect = 0.92, Method: Compositional matrix adjust. Identities = 46/226 (20%), Positives = 96/226 (42%), Gaps = 23/226 (10%) Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF----KSFW 186 +S + ++S+R ++W +RQ+ + +P + ++ PK + ++E++ + + Sbjct: 67 TSISRMISSLRKFYQWLLRQDIIERDPLVKIDSPKSERRLPTALSEEEVTKLLDAPDTNT 126 Query: 187 SEGSQPRLAFEFLLYSGLRCSD--SCRAGVQHLQNNIFSI--KTQKTGTIITVELP---- 238 G + R E L +G+R S+ + R G H + I + K K + E+ Sbjct: 127 RLGIRDRAMLEVLYATGMRVSELINLRTGDIHSELKIIRVLGKGSKERLVPITEVALSWL 186 Query: 239 DGFMKLLAMTPIGK-----ETFFINNDKQKMNATQFSIWFKAK--ATKAGVNKSA--HGV 289 + + K + + K + F+NN ++ T+ ++W K K G+ K+ H + Sbjct: 187 EKYQKDVRENQVLKSGQFTDVIFLNNHGHQL--TRQAVWQKIKKYCQLIGITKNVTPHTL 244 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335 R AT + GA + G + + YT + L + N Sbjct: 245 RHTFATHLLENGADLRVVQEILGHSDITTTQIYTNLTQKHILEVYN 290 >gi|254000090|ref|YP_003052153.1| tyrosine recombinase XerD [Methylovorus sp. SIP3-4] gi|253986769|gb|ACT51626.1| tyrosine recombinase XerD [Methylovorus sp. SIP3-4] Length = 298 Score = 39.3 bits (90), Expect = 0.92, Method: Compositional matrix adjust. Identities = 46/219 (21%), Positives = 84/219 (38%), Gaps = 27/219 (12%) Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK---------RKTEGIRPWTKEDMQ 180 P S + + S+R +++ +R+ V+++P L ++ PK + E + D+ Sbjct: 70 PRSVSRLIASLRRFYRYGLREGQVSVDPTLLIDTPKLPRSLPKSLNEDEVVALLNAPDIA 129 Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSD--SCRAGVQHLQNNIFSIKTQKTGTIITVELP 238 Q + G + R E L GLR S+ R L + + + + T + Sbjct: 130 Q-----AIGLRDRAMLETLYACGLRVSELVGLRYTEVSLNEGVVRVTGKGSKTRLVPLGE 184 Query: 239 DGFMKLLAMTPIGK---------ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAH 287 + LL G+ ++ F+ + M F K A +AG++K S H Sbjct: 185 ESVDWLLRYVREGRPQILQQRVSDSLFVTQRGEAMTRQAFWYLIKRYALQAGIHKPLSPH 244 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 +R AT + GA + G + + YT A Sbjct: 245 VLRHAFATHLLNHGADLRVVQMLLGHSDISTTQIYTHVA 283 >gi|189183843|ref|YP_001937628.1| putative integrase [Orientia tsutsugamushi str. Ikeda] gi|189180614|dbj|BAG40394.1| putative integrase [Orientia tsutsugamushi str. Ikeda] Length = 213 Score = 39.3 bits (90), Expect = 0.92, Method: Compositional matrix adjust. Identities = 45/189 (23%), Positives = 78/189 (41%), Gaps = 8/189 (4%) Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFL-LY 201 +F A++ E + NP L +++ K + R E + + E S F L LY Sbjct: 1 MFNKAIKWELMDRNPTLRIDKHKMQARERRLSYDEMTKFLQVLCREASVLIRDFALLALY 60 Query: 202 SGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLL-AMTPIGKETFFIN 258 +G R + ++ I+ I K G + L D +++L A K + ++ Sbjct: 61 TGARKRNVLEMEWDNIDFVRKIWHIPKTKNGKAQNIPLTDEIIEILQARKLTSKSKWVLS 120 Query: 259 NDKQKMNATQ--FSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKT 315 D+ K + + W+K KAG+ N H +R+ A+ AD GA + + A Sbjct: 121 TDRSKSVHLENPYRGWYKI-CKKAGIKNLRIHDLRRTFASCMADEGAGQYIISAALNHSD 179 Query: 316 VDQAETYTK 324 + YTK Sbjct: 180 IKSTSIYTK 188 >gi|310827527|ref|YP_003959884.1| Site-specific recombinase XerD [Eubacterium limosum KIST612] gi|308739261|gb|ADO36921.1| Site-specific recombinase XerD [Eubacterium limosum KIST612] Length = 399 Score = 39.3 bits (90), Expect = 0.93, Method: Compositional matrix adjust. Identities = 43/166 (25%), Positives = 74/166 (44%), Gaps = 23/166 (13%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD-FDYRKITTKHIRSG-------- 122 KWL EYRKSA +A+ + + +Y +I RK FD RK+ +++ Sbjct: 76 KWL--EYRKSA----IAITT---YHAYKTRIERKIAPYFDERKMKLGSLKAAHVQEFYIH 126 Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 +E+ K P + + M +AVR E + NP V RP + + I P + + + Sbjct: 127 LENEKLKPCTIKCYHELMNTALNYAVRSELILANPLRLVYRPAVR-KAIEPHSCYNELEL 185 Query: 183 KSFW--SEGSQPRLAFEFLLYSGLRCSD--SCRAGVQHLQNNIFSI 224 + + SEG+ + + GLR S+ + +NN+ +I Sbjct: 186 EKLFKVSEGTLLEIPILLGAFYGLRRSEIIGLKWSAVDFENNLINI 231 >gi|116492336|ref|YP_804071.1| integrase [Pediococcus pentosaceus ATCC 25745] gi|116102486|gb|ABJ67629.1| Integrase [Pediococcus pentosaceus ATCC 25745] Length = 384 Score = 39.3 bits (90), Expect = 0.93, Method: Compositional matrix adjust. Identities = 50/226 (22%), Positives = 86/226 (38%), Gaps = 39/226 (17%) Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP----WTKEDMQQFKSFWS--E 188 ++L ++F +A+R EYV NPC V P+ + + WT++++ F + + Sbjct: 133 KWLNYASMIFDYALRAEYVGRNPCTLVTMPRVQEQAGEKLENFWTRDELNTFFDYVTPER 192 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT------GTII--------- 233 + F L YSG+R + + + +++ KT G +I Sbjct: 193 DVEQFTMFRVLAYSGIRKGELLALTWKDINFEDNTLRVNKTLTQGLGGKLIVQPPKSRAG 252 Query: 234 --TVELPDGFMKLLAM-TPIGKETFF-----INNDKQKM---NATQF------SIWFKAK 276 T++L D M+ L + +ETF NN Q + N F + W Sbjct: 253 RRTIDLDDSTMRYLRQWKGVQRETFLGMGFNTNNVDQLVFASNRNHFRSMNTPTKWLNKA 312 Query: 277 ATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321 G+ S HG R A++ +G E G D + T Sbjct: 313 IKATGLKHISIHGFRHTHASLLYQSGVGLKETQQRLGHSRADSSVT 358 >gi|157157271|ref|YP_001461927.1| phage integrase family protein [Escherichia coli E24377A] gi|157079301|gb|ABV19009.1| phage integrase family [Escherichia coli E24377A] Length = 356 Score = 39.3 bits (90), Expect = 0.94, Method: Compositional matrix adjust. Identities = 39/177 (22%), Positives = 70/177 (39%), Gaps = 4/177 (2%) Query: 61 INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120 INS TL + Y K + + I++ S I R D ITTK I Sbjct: 68 INS--DNSVTLHSWLDRYEKILASRGIKQKTLINYMSKIKAIRRGLPDAPLEDITTKEIA 125 Query: 121 SGVES--RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 + + + +SA +++ F+ A+ + ++ NP + K + R E Sbjct: 126 AMLNGYIDEGKAASAKLIRSTLSDAFREAIAEGHITTNPVAATRAAKSEVRRSRLTADEY 185 Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235 ++ +++ S RLA E + +G R D C + + ++ KTG I + Sbjct: 186 LKIYQAAESSPCWLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAI 242 >gi|238923684|ref|YP_002937200.1| site-specific tyrosine recombinase [Eubacterium rectale ATCC 33656] gi|238875359|gb|ACR75066.1| site-specific tyrosine recombinase [Eubacterium rectale ATCC 33656] Length = 331 Score = 39.3 bits (90), Expect = 0.96, Method: Compositional matrix adjust. Identities = 48/244 (19%), Positives = 94/244 (38%), Gaps = 27/244 (11%) Query: 113 KITTKHIR----SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV-----ER 163 KI+T IR + R + S+ T + F+WA + Y+ NPC ++ ER Sbjct: 93 KISTNDIRVYLYKNQQERNLSNSTLDTKRTIIHAFFEWAANEGYIGSNPCRNIKPIKYER 152 Query: 164 PKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN--- 220 PKRK P T ++++ ++ + + + E +G R ++ R + + Sbjct: 153 PKRK-----PLTGIELEKVRN-ACDNLKDKALLELFYSTGCRVTEMERLDISDIDFQTKE 206 Query: 221 --IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK--QKMNATQFSIWFKAK 276 +F + + + + L +E F+++ K ++ + Sbjct: 207 VLLFGKGDKHRISYLNAKAEIAIRNYLDSRNDNEEALFVSDRKPYGRLKKPAIEKRIRVL 266 Query: 277 ATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIK 334 K+G+ + H +R +AT D G E+ G + Y A+ R +K Sbjct: 267 GEKSGIGRRLYPHLIRHTTATDGLDRGMPVEEVQQILGHVNIATTMIY---AEVSRANVK 323 Query: 335 NSRR 338 N+ R Sbjct: 324 NNHR 327 >gi|311030547|ref|ZP_07708637.1| hypothetical protein Bm3-1_08391 [Bacillus sp. m3-13] Length = 280 Score = 39.3 bits (90), Expect = 0.97, Method: Compositional matrix adjust. Identities = 46/243 (18%), Positives = 95/243 (39%), Gaps = 12/243 (4%) Query: 99 FDQIIRKSGDFDYRKITTKHIRSG-VESRKHT-PSSAIQFLTSMRVLFKWAVRQEYVAIN 156 ++ ++R GD + +TT ++ ++ H PSS + +R LFKWA + ++ N Sbjct: 31 YNMLLRYFGDIELNILTTDQLKEYLIKGSTHLKPSSLGHRVRCIRSLFKWANDEGFIKKN 90 Query: 157 PCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH 216 P ++ PK + T+ +++ + + S FEF +G R + + Sbjct: 91 PAAKLKEPKLGKRIPKFLTELEIEHLRE-SCQNSMENALFEFFYSTGCRIGEVVKLNRDD 149 Query: 217 LQNNIFSIKTQKTG-----TIITVELPDGFMKLLAMTPIGKETFFINND--KQKMNATQF 269 + S+ G + L ++ FI K++M+ Sbjct: 150 INFASNSVIVHGKGDKEREVYFNTRCSLWLKRYLDERDDQDQSLFITERRPKRRMSIDLI 209 Query: 270 SIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 K ++ AG+ K+ H +R AT + GA + + G + + Y + + Sbjct: 210 RYIIKRISSGAGIKKNIHPHQLRHSYATHMINNGAPLEVIQSLLGHEKSETTRIYAQLSG 269 Query: 328 RIR 330 ++R Sbjct: 270 KLR 272 >gi|298253366|ref|ZP_06977158.1| site-specific recombinase XerD [Gardnerella vaginalis 5-1] gi|297532761|gb|EFH71647.1| site-specific recombinase XerD [Gardnerella vaginalis 5-1] Length = 322 Score = 39.3 bits (90), Expect = 0.97, Method: Compositional matrix adjust. Identities = 52/245 (21%), Positives = 96/245 (39%), Gaps = 38/245 (15%) Query: 113 KITTKHIRS--GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170 ++TT +RS ESR H SS + + ++R F W EY++ NP + PK K Sbjct: 64 ELTTDDLRSWMADESRSHARSSLARKVVAVRGFFAWCQHVEYISGNPAEILMTPKIKN-- 121 Query: 171 IRPWTKEDMQQFKSFWSEGSQPRLA-----------------FEFLLYSGLRCSDSCRAG 213 + P ++ Q + S+ ++ E L +G+R + Sbjct: 122 MLPSVLDEYQAESLMNNVDSKANVSTSCPKNQKAVGLRNAAILELLYATGIRVGELTSLN 181 Query: 214 VQHLQNNIFSIKTQKTGT---IITVELP-----------DGFMKLLAMTPIGKETFFINN 259 +Q + + +IK G ++ +P DG LL + +E F+ Sbjct: 182 IQDINFSSHTIKVTGKGNKQRVVPFGVPAYKALSAWISKDGREILLRNSV--EEAVFLGT 239 Query: 260 DKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318 ++++ +A A V + S H +R +AT + GA E+ G +++ Sbjct: 240 RGKRIDQRLVRQIVHDEAKSAHVPDISPHALRHSAATHMLNGGADLREVQELLGHSSLNT 299 Query: 319 AETYT 323 + YT Sbjct: 300 TQRYT 304 >gi|119503715|ref|ZP_01625797.1| site-specific tyrosine recombinase XerC [marine gamma proteobacterium HTCC2080] gi|119460223|gb|EAW41316.1| site-specific tyrosine recombinase XerC [marine gamma proteobacterium HTCC2080] Length = 304 Score = 39.3 bits (90), Expect = 0.97, Method: Compositional matrix adjust. Identities = 41/153 (26%), Positives = 67/153 (43%), Gaps = 15/153 (9%) Query: 110 DYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169 D R ++ R G+ +P+S + L+S+R L+++ ++ NP L V+ PKR Sbjct: 56 DVRNWVSQLHRQGL-----SPTSIQRALSSVRSLYRFLSERDVTLGNPALGVQAPKRPRN 110 Query: 170 GIRPWTKEDMQQFKSFWSEGSQP--RLAFEFLLY-SGLRCSDSCRAGVQHLQNNIFSIKT 226 + + + + E + +A LLY SGLR S+ A + L+ N I Sbjct: 111 LPKTLDADSVNHLFQWQPETTLDFRDMAIAELLYSSGLRLSELVSANINDLEFNERMITV 170 Query: 227 QKTGTIITVELPDG------FMKLLAMTPIGKE 253 G T LP G K L++ P+G E Sbjct: 171 TGKGR-KTRTLPVGGPALTAVTKWLSLRPLGNE 202 >gi|307288234|ref|ZP_07568234.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX0109] gi|306500832|gb|EFM70151.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX0109] Length = 370 Score = 39.3 bits (90), Expect = 0.98, Method: Compositional matrix adjust. Identities = 19/90 (21%), Positives = 47/90 (52%), Gaps = 1/90 (1%) Query: 120 RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179 R+ ++++ + ++ + + ++ L AV+Q ++ +NPC +++ K + + WT +D Sbjct: 116 RTSLKNKGLSNNTVNKLMIQLKKLLDVAVKQGFLKVNPCTQLKKLPVKKKKMDYWTTKDF 175 Query: 180 QQFKSFWSEGSQP-RLAFEFLLYSGLRCSD 208 F S + P +L F+ +G+R + Sbjct: 176 NHFMSLFKPDEYPYKLFFKVAFSTGMRMGE 205 >gi|319788864|ref|YP_004090179.1| integrase family protein [Ruminococcus albus 7] gi|315450731|gb|ADU24293.1| integrase family protein [Ruminococcus albus 7] Length = 359 Score = 39.3 bits (90), Expect = 0.98, Method: Compositional matrix adjust. Identities = 43/194 (22%), Positives = 89/194 (45%), Gaps = 12/194 (6%) Query: 67 KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVES 125 K ++WL S + + V+++ ++ + F++ I+ GD +IT+K + +++ Sbjct: 62 KALCMEWL------SVNSHRVKVSTQANYMTKFEKHILPYFGDKMCYEITSKTVYGFIQA 115 Query: 126 RKHTPSSA---IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 + SA L ++ +FK+A ++EY +NP +V PK R TK++ ++ Sbjct: 116 KLDEGLSAGYVSNILVLLKTVFKYA-QKEYHILNPFDNVIMPKSTKSETRLLTKKEQKKL 174 Query: 183 KSFW-SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241 K + S + L + GLR + C Q + ++ ++T I V+ Sbjct: 175 KEYLKSNVNTATLGISLAISMGLRIGEICGLTWQDIDFKCRTLTVRRTVQRIRVKGEAKK 234 Query: 242 MKLLAMTPIGKETF 255 K++ + P K +F Sbjct: 235 TKIVILPPKSKSSF 248 >gi|222032710|emb|CAP75449.1| integrase [Escherichia coli LF82] gi|312945501|gb|ADR26328.1| putative integrase [Escherichia coli O83:H1 str. NRG 857C] Length = 357 Score = 39.3 bits (90), Expect = 0.98, Method: Compositional matrix adjust. Identities = 47/220 (21%), Positives = 88/220 (40%), Gaps = 16/220 (7%) Query: 93 ISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQ 150 + + S I RK D I+TK + + + + + +SA +++ +F+ A+ + Sbjct: 98 LDYASKIRVIRRKLPDKPLTDISTKEVAAMLNTYVAEGKAASAKLIRSTLVDVFREAIAE 157 Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSC 210 +V NP + K + R E + + + RLA + + +G R D C Sbjct: 158 GHVETNPVTATRTAKSEVRRSRLTANEYVAIYHAAEPLPIWLRLAMDLAVVTGQRVGDLC 217 Query: 211 RAGVQHLQNNIFSIKTQKTGTIITVELP---DGFMKLLAMT------PIGKETFFINNDK 261 R + +N I+ KTGT + + L D LA T G ET + Sbjct: 218 RMKWSDINDNHLHIEQGKTGTKLAIPLMLTIDALNISLADTLQKCREASGSETIIASTHH 277 Query: 262 QKMNATQFSIWFKAKATKAGVN-----KSAHGVRKFSATI 296 + ++ S +F +G++ + H +R SA + Sbjct: 278 EPLSPKTVSKYFTKARNVSGLSFDGDPPTFHELRSLSARL 317 >gi|253990782|ref|YP_003042138.1| site-specific tyrosine recombinase XerC [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253990786|ref|YP_003042142.1| site-specific tyrosine recombinase XerC [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|211639116|emb|CAR67728.1| Similar to integrase/recombinase [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|211639122|emb|CAR67734.1| Phage integrase [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253782232|emb|CAQ85396.1| similar to phage integrase/recombinase [Photorhabdus asymbiotica] gi|253782236|emb|CAQ85400.1| similar to phage integrase/recombinase [Photorhabdus asymbiotica] Length = 376 Score = 39.3 bits (90), Expect = 0.98, Method: Compositional matrix adjust. Identities = 45/208 (21%), Positives = 77/208 (37%), Gaps = 20/208 (9%) Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR-----PWTKEDMQQFKSFWSEGSQ 191 L ++V FKW +Q + NP +E P+ + R T++ + Q +G + Sbjct: 109 LEPLKVWFKWLTKQNLILANPAADLELPRLEKHLPRYILTIDETEQILAQPDLTTLQGVR 168 Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL------- 244 R E L +G+R + R V + + ++ ++ LP G L Sbjct: 169 DRALMELLWSTGMRRGELTRLDVYSVDGSRKTVTIRQGKGNKDRVLPLGERALSWLQRYQ 228 Query: 245 ------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATI 296 L + P K F + + A S A G+ K + H R AT Sbjct: 229 QQVRPQLIVNPDVKALFVAMDGLDGLQANGISNLVTAYINAVGIEKKGACHLFRHAMATQ 288 Query: 297 SADAGATAHELMATYGWKTVDQAETYTK 324 + GA + A G +V+ + YT+ Sbjct: 289 MLENGADLRWIQAMLGHASVESTQVYTQ 316 >gi|228915207|ref|ZP_04078802.1| DNA integration/recombination/invertion protein [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228844438|gb|EEM89494.1| DNA integration/recombination/invertion protein [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 369 Score = 39.3 bits (90), Expect = 0.99, Method: Compositional matrix adjust. Identities = 30/135 (22%), Positives = 63/135 (46%), Gaps = 10/135 (7%) Query: 83 HW---GSLAVNSR--ISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQF 136 HW S+++ S + + + +Q +I G K+ HI+ ++ + + Sbjct: 71 HWLEIKSMSIESSTFVVYRACINQHVIPSIGMITLHKLNVMHIQKCYKTAINKGIANNSI 130 Query: 137 LTSMRVL---FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193 L R+L AV+Q + NP E PK++ I+ WT+E++++F S+ S+ Sbjct: 131 LLMHRILKSALNLAVKQNIITRNPSAFAEIPKKERTSIQTWTEEEVKKF-LLHSQESRYH 189 Query: 194 LAFEFLLYSGLRCSD 208 + + + +G+R + Sbjct: 190 IGYLLAITTGMRMGE 204 >gi|213971953|ref|ZP_03400051.1| prophage PSPPH06, site-specific recombinase, phage integrase family [Pseudomonas syringae pv. tomato T1] gi|301386017|ref|ZP_07234435.1| prophage PSPPH06, site-specific recombinase phage integrase family protein [Pseudomonas syringae pv. tomato Max13] gi|302058854|ref|ZP_07250395.1| prophage PSPPH06, site-specific recombinase phage integrase family protein [Pseudomonas syringae pv. tomato K40] gi|213923268|gb|EEB56865.1| prophage PSPPH06, site-specific recombinase, phage integrase family [Pseudomonas syringae pv. tomato T1] Length = 382 Score = 39.3 bits (90), Expect = 1.00, Method: Compositional matrix adjust. Identities = 26/109 (23%), Positives = 50/109 (45%), Gaps = 9/109 (8%) Query: 70 TLKWLISEYRKSAHWGSLA-------VNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG 122 +L++L E+ +S + LA SR +Y ++ + G+ +K T ++ Sbjct: 76 SLQYLCDEFHRSQQFKELAKKTQDDYCYSRDVLVAYPTKLDKPLGELAVKKFTPAMVQRI 135 Query: 123 VE--SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169 ++ + TPS A L +R L +W + +V NP +E PK + + Sbjct: 136 IDKIAEAGTPSKAAHALRYLRRLMQWGRNRGFVTDNPAKGIEAPKERKQ 184 >gi|108760213|ref|YP_631219.1| phage integrase family site specific recombinase [Myxococcus xanthus DK 1622] gi|34222772|sp|P59818|XERC_MYXXA RecName: Full=Tyrosine recombinase xerC gi|122981099|sp|Q1D804|XERC_MYXXD RecName: Full=Tyrosine recombinase xerC gi|27804888|gb|AAO22922.1| integrase/recombinase [Myxococcus xanthus] gi|108464093|gb|ABF89278.1| site-specific recombinase, phage integrase family [Myxococcus xanthus DK 1622] Length = 300 Score = 39.3 bits (90), Expect = 1.0, Method: Compositional matrix adjust. Identities = 28/95 (29%), Positives = 44/95 (46%), Gaps = 8/95 (8%) Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK--RKTEGIRP----WT 175 G S H P+S + L S++ +K+ VRQ+ + +P V+ PK + + P + Sbjct: 61 GTLSTDHAPASRARRLASIKSFYKYLVRQKLLPASPAKLVKSPKLPKTLPKVLPVEEVFA 120 Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSC 210 DM K+ G + R E L GLR S+ C Sbjct: 121 ILDMPDVKTVL--GLRDRAILELLYGGGLRISELC 153 >gi|149920280|ref|ZP_01908751.1| integrase/recombinase XerD [Plesiocystis pacifica SIR-1] gi|149818867|gb|EDM78307.1| integrase/recombinase XerD [Plesiocystis pacifica SIR-1] Length = 302 Score = 38.9 bits (89), Expect = 1.0, Method: Compositional matrix adjust. Identities = 51/251 (20%), Positives = 96/251 (38%), Gaps = 38/251 (15%) Query: 110 DYRKITTKHIRSGVE-SRKHTPSSAIQFLTSM-----------------RVLFKWAVRQE 151 D R++ +GVE + + +P++ + FL S+ R LF+W ++ Sbjct: 35 DLRRLLDALSGAGVERASQVSPAALLGFLRSLAEAGLSARSQARRWVAVRGLFRWLRSEQ 94 Query: 152 YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCS 207 V ++P + PK + ++E++ + + G + EF+ +G R S Sbjct: 95 LVEVDPTQGIALPKAVNKLPELLSREEVVRLIAAPGVDTPLGLRDTALLEFMYATGCRVS 154 Query: 208 DSCRAGVQ--HLQNNIFSIKTQKTGTIITVELPD-GFMKLLAMTPIGKETF--------- 255 ++C + HL + + T K V L D + LLA G+ Sbjct: 155 EACDLELSSLHLDQGLV-VLTGKGSKQRMVPLGDCALVALLAWLEEGRPELVARAPREAH 213 Query: 256 -FINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYG 312 F+N +++ + A AG+ + S H +R AT + GA + G Sbjct: 214 VFVNKRGSRLSRQGCFFRLRQHAVSAGITRDISPHKLRHSFATHLIEGGADLRAVQTLLG 273 Query: 313 WKTVDQAETYT 323 + + YT Sbjct: 274 HADISTTQVYT 284 >gi|82701881|ref|YP_411447.1| tyrosine recombinase XerD [Nitrosospira multiformis ATCC 25196] gi|82409946|gb|ABB74055.1| Tyrosine recombinase XerD [Nitrosospira multiformis ATCC 25196] Length = 303 Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust. Identities = 60/260 (23%), Positives = 97/260 (37%), Gaps = 29/260 (11%) Query: 92 RISFESYFDQIIRKSGDFDYRKITTKH-----IRSGVESRKHTPSSAIQFLTSMRVLFKW 146 R E + D R+ D D +T H +G S S+ + L+S++ +++ Sbjct: 33 RSDLEQFGDWFARQKPD-DSSFLTVTHSDLLGFMTGRFSAGMKASTTSRELSSLKRFYRF 91 Query: 147 AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAFEFLLYS 202 +RQ + +P L+++ P+ T+ D++ + G + R E L S Sbjct: 92 LLRQGKINADPTLNIDTPRLPRNLPVSLTEADVEALLGAPDVTFPLGLRDRAMLEVLYAS 151 Query: 203 GLRCSD--SCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKE------- 253 GLR S+ S +G L + I + +T P G L M KE Sbjct: 152 GLRVSELVSLESGQISLDMGVVRIMGKGGKERLT---PLGEEALEWMVRYIKEIRPGLLD 208 Query: 254 -----TFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHE 306 F+ M F K A +AG+ K S HG+R AT + GA Sbjct: 209 GKSSNALFVTYRGAGMTRQAFWYLIKRYARQAGITKPLSPHGLRHAFATHLLNHGADLRV 268 Query: 307 LMATYGWKTVDQAETYTKGA 326 + G + + YT A Sbjct: 269 VQLLLGHADISTTQIYTHVA 288 >gi|293372135|ref|ZP_06618526.1| tyrosine recombinase XerC [Bacteroides ovatus SD CMC 3f] gi|292632927|gb|EFF51514.1| tyrosine recombinase XerC [Bacteroides ovatus SD CMC 3f] Length = 293 Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust. Identities = 55/241 (22%), Positives = 93/241 (38%), Gaps = 29/241 (12%) Query: 107 GDFDYRKITTKHIRSGVES---RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER 163 G FD ++ + IR + S + +T +S + L+S+R +K+ +RQ I+P ++ Sbjct: 40 GKFDPLEVEAELIREWIVSLMDKGYTSTSVNRKLSSLRTFYKYLIRQGETTIDPLRKIKG 99 Query: 164 PKRK---------TEGIRPWTKEDM-QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAG 213 PK K E R D Q FK G + RL E +G+R S+ Sbjct: 100 PKNKKPLPVFLKENEMNRLLDDTDFGQGFK-----GCRDRLVIEVFYATGMRLSELIGLD 154 Query: 214 VQHLQNNIFSIK-TQKTGTIITVELPDGFMKLL--------AMTPIGKETFFINNDKQKM 264 + + + +K T K + D +L+ P E FFI + +++ Sbjct: 155 DKDVDFSASLLKVTGKRNKQRLIPFGDELQELMLEYINVRNETIPERSEAFFIRENGERL 214 Query: 265 NATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 K +K KS H +R AT + A + G +++ E Y Sbjct: 215 YKNLVYNLVKRNLSKVVTLKKKSPHVLRHTFATTMLNNEAELGAVKELLGHESITTTEIY 274 Query: 323 T 323 T Sbjct: 275 T 275 >gi|229150814|ref|ZP_04279026.1| DNA integration/recombination/invertion protein [Bacillus cereus m1550] gi|228632603|gb|EEK89220.1| DNA integration/recombination/invertion protein [Bacillus cereus m1550] Length = 369 Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust. Identities = 27/118 (22%), Positives = 58/118 (49%), Gaps = 5/118 (4%) Query: 95 FESYFDQ-IIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVL---FKWAVRQ 150 + ++ +Q +I G K+ HI+ ++ S+ L R+L AV+Q Sbjct: 88 YRAFINQHVIPSIGMVALHKLNVMHIQKCYKNAIDKGISSNSILLMHRILKSALNLAVKQ 147 Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSD 208 ++ NP E PK++ I+ WT+E++++F + S+ S+ + + + +G+R + Sbjct: 148 NIMSRNPADFAEIPKKEKTPIQTWTEEEVKKFLAH-SQESRYHIGYLLAITTGMRLGE 204 >gi|323139352|ref|ZP_08074404.1| integrase family protein [Methylocystis sp. ATCC 49242] gi|322395418|gb|EFX97967.1| integrase family protein [Methylocystis sp. ATCC 49242] Length = 317 Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust. Identities = 34/127 (26%), Positives = 55/127 (43%), Gaps = 10/127 (7%) Query: 114 ITTKHIRSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR----- 166 I HI + VE+ R H+ +A Q L ++R+LF W V + V NP SV PK Sbjct: 65 IEPLHIGAYVEAMTRSHSAPTAKQRLAAIRMLFDWLVTGQIVPTNPAASVRGPKHVVKVG 124 Query: 167 KTEGIRPW-TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQ--HLQNNIFS 223 KT + P + + G + R ++YS R + V+ ++QN Sbjct: 125 KTPVLDPAEARALLDSIDVTAPVGLRDRALIGLMIYSFARVGAALAMKVEDVYVQNRRLW 184 Query: 224 IKTQKTG 230 ++ + G Sbjct: 185 VRLHEKG 191 >gi|294340803|emb|CAZ89198.1| putative XerD or XerC integrase [Thiomonas sp. 3As] Length = 340 Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust. Identities = 28/109 (25%), Positives = 51/109 (46%), Gaps = 9/109 (8%) Query: 61 INSPRKKPTTLKWLISEYRKSAHWGS-LAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119 +NSP TL+ L ++Y A LA + +++ D +++++ I + HI Sbjct: 13 LNSP-----TLRQLAADYLAHAQTERRLAEGTLVNYRRDLDDLLQRAEALGAAPIESLHI 67 Query: 120 R---SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK 165 R + + + +P + L++ R F+W R +VA NP V PK Sbjct: 68 RRWAAQLHAGGMSPRAIAARLSAWRSFFRWMGRLGFVAANPVQDVRAPK 116 >gi|229825965|ref|ZP_04452034.1| hypothetical protein GCWU000182_01329 [Abiotrophia defectiva ATCC 49176] gi|229789707|gb|EEP25821.1| hypothetical protein GCWU000182_01329 [Abiotrophia defectiva ATCC 49176] Length = 366 Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust. Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 1/88 (1%) Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTE-GIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY 201 +F AV+ + +NPC SV++ R + I WT ++ Q F + S L FE L + Sbjct: 137 IFIHAVKIYSLRVNPCKSVKKMGRSDDRSITFWTFDEYQHFIRTYDTTSMHYLMFEILFW 196 Query: 202 SGLRCSDSCRAGVQHLQNNIFSIKTQKT 229 +G+R + + + SI KT Sbjct: 197 TGMREGELLALTMNDIDFTQMSIHISKT 224 >gi|229181836|ref|ZP_04309144.1| DNA integration/recombination/invertion protein [Bacillus cereus 172560W] gi|228601634|gb|EEK59147.1| DNA integration/recombination/invertion protein [Bacillus cereus 172560W] Length = 369 Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust. Identities = 27/118 (22%), Positives = 57/118 (48%), Gaps = 5/118 (4%) Query: 95 FESYFDQ-IIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVL---FKWAVRQ 150 + ++ +Q +I G K+ HI+ ++ + L R+L AV+Q Sbjct: 88 YRAFINQHVIPSIGMVALHKLNVMHIQKCYKTAIDKGITNNSILLMHRILKSALNLAVKQ 147 Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSD 208 ++ NP E PK++ I+ WT+E++++F S S+ S+ + + + +G+R + Sbjct: 148 NIISRNPADFAEIPKKEKTPIQTWTEEEVKKFLSH-SQESRYHIGYLLAITTGMRLGE 204 >gi|320646833|gb|EFX15703.1| Site-specific recombinase, phage integrase family protein [Escherichia coli O157:H- str. 493-89] gi|320652110|gb|EFX20447.1| Site-specific recombinase, phage integrase family protein [Escherichia coli O157:H- str. H 2687] Length = 229 Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust. Identities = 44/197 (22%), Positives = 78/197 (39%), Gaps = 6/197 (3%) Query: 36 PYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISF 95 P ES + A L K E + R + T L ++ SA++ L+ ++ + Sbjct: 28 PTSRESVTLTAIEDGLAALWKKYEETVNHRDRAMTFGRLWEKFLASAYYSELSPRTQKDY 87 Query: 96 ESYFDQIIRKSGDFDYRKITTKHIRSGVESR-KHTPSSAIQFLTSMRVLFKWAVRQEYVA 154 + ++ G + +HIR ++ R + + + A +SM ++ W + YV Sbjct: 88 LQHQKKLPAVFGKVLADSVKPEHIRRYMDKRGEQSKTQANHEKSSMSRVYSWGYERGYVK 147 Query: 155 INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR-LAFEFLLYSGLRCSDSCRAG 213 NPC V + K K KE +++ S P +A E R SD Sbjct: 148 ANPCAGVSKFKAKNRERYVTDKE----YQAVLSVAPLPVFIAMEIAYLCAARVSDVLSLK 203 Query: 214 VQHLQNNIFSIKTQKTG 230 + + N+ I+ KTG Sbjct: 204 WEQIGNDGIFIQQGKTG 220 >gi|251781708|ref|YP_002996010.1| site-specific recombinase, phage integrase family [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242390337|dbj|BAH80796.1| site-specific recombinase, phage integrase family [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 384 Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust. Identities = 27/102 (26%), Positives = 47/102 (46%), Gaps = 3/102 (2%) Query: 107 GDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166 GD KI+ ++ + + + Q + R +F +A++ + + NP + PKR Sbjct: 106 GDLPISKISPLDCQNFITEKAKVFKNIKQIKSYTRKVFDFAIKMKLLKHNPMTEIIMPKR 165 Query: 167 KTEGIRP-WTKEDMQQFKS--FWSEGSQPRLAFEFLLYSGLR 205 K I WT +++Q+F + E + F L YSGLR Sbjct: 166 KKTRIENYWTVQELQEFLAIVLQEEPYKHYALFRLLAYSGLR 207 >gi|327402450|ref|YP_004343288.1| integrase family protein [Fluviicola taffensis DSM 16823] gi|327317958|gb|AEA42450.1| integrase family protein [Fluviicola taffensis DSM 16823] Length = 404 Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust. Identities = 35/139 (25%), Positives = 70/139 (50%), Gaps = 19/139 (13%) Query: 118 HIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAIN--PCLSVERPKRKTEGI-RPW 174 ++R+ + + +T + ++F+ R +F A +Q+ + ++ P L + K KTE + R + Sbjct: 161 YLRTKLNNSTNTIHTNLKFI---RTVFNKAFQQDIIELSSSPFL---KFKMKTEKVQRDY 214 Query: 175 TKEDMQQFKSFWSEGSQPRLAFE-------FLLYSG-LRCSDSCRAGVQHLQNNIFSIKT 226 ED + K F +Q L E F YSG LR SD + H ++ + Sbjct: 215 LTED--ELKIFAEVDTQGNLKLELHQDMFVFAAYSGGLRISDILQLQWIHFDDSHINFTI 272 Query: 227 QKTGTIITVELPDGFMKLL 245 +KTG+ I++++P+ + ++ Sbjct: 273 KKTGSQISIKIPNIALNII 291 >gi|192360546|ref|YP_001981926.1| tyrosine recombinase XerD [Cellvibrio japonicus Ueda107] gi|190686711|gb|ACE84389.1| tyrosine recombinase XerD [Cellvibrio japonicus Ueda107] Length = 299 Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust. Identities = 52/219 (23%), Positives = 93/219 (42%), Gaps = 22/219 (10%) Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS---- 187 S +FL+ +R ++ +R+ ++ NP VE PK + ++ D++ S Sbjct: 73 STARFLSCLRGFYRLQIREGHLHDNPLALVENPKLSRSLPKSLSESDVENLLSAPDVDDP 132 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSI--KTQKTGTIITVELPDGFMK 243 G + + E L GLR S+ + +L+ N+ + K K + E +++ Sbjct: 133 VGLRDKTMLEVLYACGLRVSELVGLTMSQVNLRQNVVRVMGKGSKERLVPMGEEAAAWLQ 192 Query: 244 --LLAMTPI-----GKETFFINNDKQKMNATQFSIWFKAK--ATKAGVNK--SAHGVRKF 292 L P+ E F ++ Q M T+ + W++ K A AG+NK S H +R Sbjct: 193 RYLREARPVLLNNFPDEVVFPSSRGQPM--TRQTFWYRIKHWAQVAGINKPLSPHTLRHA 250 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 AT + GA + G + + YT A R+R+ Sbjct: 251 FATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVA-RLRM 288 >gi|324113623|gb|EGC07598.1| phage integrase [Escherichia fergusonii B253] Length = 231 Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust. Identities = 25/107 (23%), Positives = 48/107 (44%) Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 +SA +++ +F+ A+ + +VA NP + K + R E + + + + Sbjct: 12 ASAKLIRSTLVDVFREAIAEGHVATNPATATRTAKSEVRRSRLTANEYVAIYHAAEPLPT 71 Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL 237 RLA + + +G R D CR + +N I+ KTG + + L Sbjct: 72 WLRLAMDLAVVTGQRVGDLCRMKWSDINDNHLHIEQSKTGAKLAIPL 118 >gi|229073696|ref|ZP_04206809.1| DNA integration/recombination/invertion protein [Bacillus cereus F65185] gi|228709405|gb|EEL61466.1| DNA integration/recombination/invertion protein [Bacillus cereus F65185] Length = 369 Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust. Identities = 25/120 (20%), Positives = 57/120 (47%), Gaps = 5/120 (4%) Query: 93 ISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVL---FKWAV 148 + + ++ +Q +I G K+ HI+ ++ + L R+L AV Sbjct: 86 VGYRAFINQHVIPSIGMVTLHKLNVMHIQKCYKTAIDKGIANNSILLMHRILKSALNLAV 145 Query: 149 RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSD 208 +Q ++ NP E PK++ I+ WT++++++F S+ S+ + + + +G+R + Sbjct: 146 KQNIISRNPAAFAEIPKKERTSIQTWTEDEVKKF-LLHSQESRYHIGYLLAITTGMRMGE 204 >gi|300770362|ref|ZP_07080241.1| phage integrase family site-specific recombinase [Sphingobacterium spiritivorum ATCC 33861] gi|300762838|gb|EFK59655.1| phage integrase family site-specific recombinase [Sphingobacterium spiritivorum ATCC 33861] Length = 419 Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust. Identities = 85/368 (23%), Positives = 157/368 (42%), Gaps = 54/368 (14%) Query: 1 MTPSLRLPPFV-TKERT---RHGKIIYYFRKGH---GRRIRLPYPHESTFIPAYMSALTG 53 ++ + +PP KER ++ KI Y R + R+R+ ++ + A S T Sbjct: 37 LSLQISVPPLYWDKERECIKKNNKIKGYVRLNNFIDNERVRM----KNQLVEAEQSDRTL 92 Query: 54 STPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR--KSGDFDY 111 S+ K + I ++P ++ +Y+K+ S +V +++ +++ R KS + Sbjct: 93 SSKKIKDIIKGEEEPDFFEF-AEQYQKTIE-SSESVRLYNQYKAILNKLERFNKSRQLKF 150 Query: 112 RKIT-------TKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYV--AINPCLSVE 162 +IT ++H+ + ++R +T S+ ++ + R L+ A +E V NP ++ Sbjct: 151 SEITVSYLKRFSEHLATECKNRTNTISTNLKVI---RKLYNLATLEEVVPEERNPFKKLK 207 Query: 163 RPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAFEFLLYSG-LRCSDSCRAGVQHL 217 KT I TKED+ + + + R F F +Y+G LR SD + + Sbjct: 208 LEWEKT-NIGYLTKEDIDKIRHVELDPMGKDYHIRNMFVFAMYTGGLRFSDLLMLRWEDV 266 Query: 218 QNNI-FSIKTQKTGTIITVELPDGFMKLLAM----TPIGKETF---FINNDKQKMNATQF 269 Q++ + TQKT T +TV+L + + +L++ T F F++NDK N Sbjct: 267 QDDERVKVYTQKTKTNLTVKLTNVSLAILSIYRPSTYTNASGFIFPFLDNDKNYSNPKYL 326 Query: 270 -----------SIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTV 316 + + K+G+NK H R AT + G + G +V Sbjct: 327 YRRISSINAVANTRLREIGKKSGINKHLHFHMSRHTFATRGLEIGMPLTHISKLMGHSSV 386 Query: 317 DQAETYTK 324 E Y K Sbjct: 387 AMTENYAK 394 >gi|260583822|ref|ZP_05851570.1| integrase/recombinase XerC [Granulicatella elegans ATCC 700633] gi|260158448|gb|EEW93516.1| integrase/recombinase XerC [Granulicatella elegans ATCC 700633] Length = 294 Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust. Identities = 24/100 (24%), Positives = 52/100 (52%), Gaps = 6/100 (6%) Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 + +++ SS +FL+S+R +++ + ++V NP S+ K + + +++M++F Sbjct: 41 LHQQQYNRSSISRFLSSLRSFYQYLLEHDFVEENPFASISYKKGQKRLPEFFYEDEMEKF 100 Query: 183 KSFWSEGSQP-----RLAFEFLLYSGLRCSDSCRAGVQHL 217 + +G+QP R E L +G+R S+ +Q L Sbjct: 101 IA-SIDGNQPLDQRNRALIEVLYATGMRVSELTELTLQQL 139 >gi|257885090|ref|ZP_05664743.1| integrase [Enterococcus faecium 1,231,501] gi|257820942|gb|EEV48076.1| integrase [Enterococcus faecium 1,231,501] Length = 353 Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust. Identities = 41/147 (27%), Positives = 68/147 (46%), Gaps = 16/147 (10%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE--SRKHTP 130 WL S Y+K+ S + ++I F + I K G+ KI T + + V S K T Sbjct: 76 WLES-YKKTVKESSYS-RTKIIFNKH---IYPKFGNIKLSKINTAYCQKVVNDWSEKGTS 130 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLS--VERPKRKTE-GIRPWTKEDMQQFKSFWS 187 F+ M +FK+A+ + NP L+ + +P+ KTE ++ +TKE ++ F + S Sbjct: 131 KQYPLFINYMNKVFKYAINIGLTSDNPTLNLLIPKPQIKTEKKLKLYTKEQLELFLNEVS 190 Query: 188 EGSQPRL------AFEFLLYSGLRCSD 208 + P F L +SG R + Sbjct: 191 QEQNPYFKNRDYTLFRLLAFSGCRIGE 217 >gi|317057341|ref|YP_004105808.1| integrase family protein [Ruminococcus albus 7] gi|315449610|gb|ADU23174.1| integrase family protein [Ruminococcus albus 7] Length = 372 Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust. Identities = 61/279 (21%), Positives = 100/279 (35%), Gaps = 58/279 (20%) Query: 100 DQIIRKSGDFDYRKITTKHI--------RSGVESRKHTPSSA------IQFLTSMRVLFK 145 D++I G KIT + I + G R P S + F++S +F+ Sbjct: 73 DRVIPALGHLRIDKITARDIQKFINSLAKPGANKRNGKPLSQKTMRHHLSFISS---IFE 129 Query: 146 WAVRQEYVAINPCLSVERPKRKTEG---IRP----WTKEDMQQFKSFWSEGSQP-RLAFE 197 +A+R + V NPC V PK G +P +TKE ++F E ++ F Sbjct: 130 YAIRLDMVNTNPCSKVMIPKIDASGKAYKKPEKHIYTKEQAREFMKILREAPMKYKVFFT 189 Query: 198 FLLYSGLRCSDSC------------RAGVQHLQN-----NIFSIKTQKTGTIITVELPDG 240 +Y+G R + + H N I+S T+ + V+LP Sbjct: 190 LAIYTGCRRGELLGIEWKNIDFERGTVKIDHTSNYTADKGIYSDATKTERSTRMVDLPPA 249 Query: 241 FMKLLAMTPIGKETF--------------FINNDKQKMNATQFSIWFKAKATKAGVN-KS 285 + LL ++++ F D Q M+ W + + Sbjct: 250 VIGLLKAYKHDQDSYKANLGDEWQEHDRLFTKWDGQPMHPNTPYTWLMRECERRNFPFYG 309 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKT-VDQAETYT 323 H R F A++ +AG + A G T V TY+ Sbjct: 310 LHSFRHFFASVEIEAGVDPTTVAAMLGHSTPVTTMSTYS 348 >gi|218553295|ref|YP_002386208.1| Integrase from phage [Escherichia coli IAI1] gi|218360063|emb|CAQ97610.1| Integrase from phage [Escherichia coli IAI1] Length = 356 Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust. Identities = 48/215 (22%), Positives = 83/215 (38%), Gaps = 11/215 (5%) Query: 25 FRKGHGRRIRLPYPHESTFIPAYMSALTGST--PKREYINSPRKKPTTLKWLISEYRKSA 82 F G RRI + + I A + +G P INS TL + Y K Sbjct: 35 FGLGRDRRIAI-----TEAIQANIELFSGHKHKPLTARINS--DNSVTLHSWLDRYEKIL 87 Query: 83 HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKHTPSSAIQFLTSM 140 + + I++ S I R D ITTK I + + + +SA +++ Sbjct: 88 ASRGIKQKTLINYMSKIKAIRRGLPDAPLEDITTKEIAAMLNGYIDEGKAASAKLIRSTL 147 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL 200 F+ A+ + ++ NP + K + R E ++ +++ S RLA E + Sbjct: 148 SDAFREAIAEGHITTNPVAATRAAKSEVRRSRLTADEYLKIYQAAESLPCWLRLAMELAV 207 Query: 201 YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235 +G R D C + + ++ KTG I + Sbjct: 208 VTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAI 242 >gi|158339285|ref|YP_001520462.1| phage integrase [Acaryochloris marina MBIC11017] gi|158309526|gb|ABW31143.1| phage integrase [Acaryochloris marina MBIC11017] Length = 335 Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust. Identities = 39/187 (20%), Positives = 82/187 (43%), Gaps = 17/187 (9%) Query: 64 PRKKPTTLKWL-ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG 122 P+ P L+W+ + E+ +S ++ N+R ++E Q + + D + +IT + + Sbjct: 29 PKTTPADLRWMRVEEFMRSR---EISSNTRKAYERDLKQFMDWT-DKGWHEITARDLDRY 84 Query: 123 VESRKHTPSSAIQF---------LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173 K P+ Q L +++ FKW ++Y+ +P L +E+ K + Sbjct: 85 KNYLKVEPNQRGQLRKNATINRNLAALQGFFKWLTVRDYITKDPTLLLEKLKSDPVLPQE 144 Query: 174 WTKEDMQQ-FKSFWSEGSQP--RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230 ++++++ +++ G A L+ GLR S+ R V +I+ K Sbjct: 145 FSQDEVDNLYQAICDRGFHAFRDRALLHLIDHGLRASEIHRLNVGDYDGQRITIRVAKAD 204 Query: 231 TIITVEL 237 ++ TV L Sbjct: 205 SVGTVPL 211 >gi|127511928|ref|YP_001093125.1| phage integrase family protein [Shewanella loihica PV-4] gi|126637223|gb|ABO22866.1| phage integrase family protein [Shewanella loihica PV-4] Length = 324 Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust. Identities = 49/185 (26%), Positives = 76/185 (41%), Gaps = 19/185 (10%) Query: 107 GDFDYRKITTKHIRSGVESR----KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE 162 GD ++T +HI ++ R K + I L+ M K+A+R + NPC SV Sbjct: 93 GDIRVDELTPRHIYQYMDVRGKKGKTQTNREIAMLSHM---LKYAIRWGLIDHNPCRSVM 149 Query: 163 RPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA--FEFLLYSGLRCSDSCRAGVQHLQNN 220 R K E R ED +++K+F + + P +A +F L +GLR SD + L+ + Sbjct: 150 RFK---ETPRDRYIED-KEYKAF-RDFAGPLIAAYMDFKLLTGLRKSDILKLRRDALKED 204 Query: 221 IFSIKTQKTGTIITVELPDGFMKLLAMT-----PIGKETFFINNDKQKMNATQFSIWFKA 275 + KT I + D + PI F Q FS ++ Sbjct: 205 GIHVLINKTKRKIIISWSDHLRAAVQAIKDLPRPINSIYLFSTRKGQPYTTDGFSSIWQR 264 Query: 276 KATKA 280 K KA Sbjct: 265 KMVKA 269 >gi|301057714|ref|ZP_07198787.1| site-specific recombinase, phage integrase family [delta proteobacterium NaphS2] gi|300448175|gb|EFK11867.1| site-specific recombinase, phage integrase family [delta proteobacterium NaphS2] Length = 345 Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust. Identities = 49/219 (22%), Positives = 96/219 (43%), Gaps = 24/219 (10%) Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR----KSGDFDYRKITTKHIRS 121 KK TLK E+ + H +R + E Y ++R K GD +I + ++ Sbjct: 27 KKVPTLKRYAEEWFQLPH-----KMNRFTLERYKGTMVRHVYPKLGDHQIDQIKRRDLKV 81 Query: 122 GVES--RKHTPSSAIQFLTS-MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 + +K S+ Q + S + +F+ A+ E + +NP + KR++ I+P+T++ Sbjct: 82 FFDRLLKKGMKESSFQLIKSPLSKIFQHAIDDELIQVNPLSGISHSKRRSIDIKPFTEDQ 141 Query: 179 ----MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQ----HLQNNIFSIKTQKTG 230 ++ K + P F LL +G+R + G+Q ++ +K Sbjct: 142 AFLFLEAAKDYRKGVYYPH--FLTLLRTGVRIGELL--GLQWKDIDFKSRELVLKRHIFQ 197 Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF 269 T + +G ++ + MTP ET ++++NA +F Sbjct: 198 TTVMDATKNGQIRTVDMTPHLSETLRALKKEKQINALKF 236 >gi|124485609|ref|YP_001030225.1| formylmethanofuran dehydrogenase subunit E-like protein [Methanocorpusculum labreanum Z] gi|124363150|gb|ABN06958.1| phage integrase family protein [Methanocorpusculum labreanum Z] Length = 320 Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust. Identities = 26/116 (22%), Positives = 55/116 (47%), Gaps = 5/116 (4%) Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 R+ +P+S Q+ +++ + + + Q+ NP V+RPK K ++ + K + + +F Sbjct: 103 RQLSPASLRQYDSALSSFYGYLINQDITEANPMTKVDRPKIKDRELK-YLKHN--EVVAF 159 Query: 186 WSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD 239 + PR L + +G+R S+ C +H+ +I+ + G I + D Sbjct: 160 INSIENPRNALLIRTIYATGMRISEICGLLAEHIDFEEETIRVRGKGGKIRIVFCD 215 >gi|302858546|gb|ADL71292.1| gp32 [Mycobacterium phage Eagle] Length = 373 Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust. Identities = 50/228 (21%), Positives = 84/228 (36%), Gaps = 30/228 (13%) Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 K P++ +R + AV + ++ NPC +E+ + + E++++ + Sbjct: 132 KQYPTARRHAYNVLRAVMNTAVEDKLLSENPC-RIEQKAAAERDVEALSVEELEKVAAEV 190 Query: 187 SEGSQPRLAFEFLLYSGLRCSD------------------SCRAGVQHLQNNIF--SIKT 226 E R+A L ++ LR + R G + I KT Sbjct: 191 HE--HYRIAVYILAWTSLRFGELIELRRKDIMDDGETMHFRVRRGAARVGQKIVVGETKT 248 Query: 227 QKTGTIITV-----ELPDGFMKLLAMTPIGKETFFINN-DKQKMNATQFSIWFKAKATKA 280 ++ +TV E+ MK G E + KQ++ F+ K K Sbjct: 249 VRSKRPVTVPPHVAEMVREHMKDRTKMNKGPEALLVTTTQKQRLTKAAFTRSLKKGYAKI 308 Query: 281 G-VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 G + H +R AT +A AGAT ELM G T A Y ++ Sbjct: 309 GRTDLRVHDLRAVGATYAAQAGATTKELMVRLGHTTPRMAMKYQMASE 356 >gi|268679599|ref|YP_003304030.1| integrase family protein [Sulfurospirillum deleyianum DSM 6946] gi|268617630|gb|ACZ11995.1| integrase family protein [Sulfurospirillum deleyianum DSM 6946] Length = 346 Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust. Identities = 32/134 (23%), Positives = 61/134 (45%), Gaps = 13/134 (9%) Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 P + ++ +++ V+FK+A + + NP V+ PK + ++ ED + E Sbjct: 125 PKTVKEYRSTLSVVFKFAFNDDLIRKNPLTPVKSPKLPRRIVDVFSDED----RKLLIEH 180 Query: 190 SQPRL--AFEFLLYSGLRCSDSCRA---GVQHLQNNIFSIKTQKTGTIITVELPDGF-MK 243 S +L +F+ YSGLR + + +N I + G TV+LP G ++ Sbjct: 181 SSGQLHNLIQFVFYSGLRAGEIIGLKWDNIDFDKNKIDVCMRVRKG---TVDLPKGDKIR 237 Query: 244 LLAMTPIGKETFFI 257 L+ + P K+ + Sbjct: 238 LIDLLPQAKQALLV 251 >gi|229122156|ref|ZP_04251371.1| DNA integration/recombination/invertion protein [Bacillus cereus 95/8201] gi|228661282|gb|EEL16907.1| DNA integration/recombination/invertion protein [Bacillus cereus 95/8201] Length = 369 Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust. Identities = 26/120 (21%), Positives = 57/120 (47%), Gaps = 5/120 (4%) Query: 93 ISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVL---FKWAV 148 + + ++ +Q +I G K+ HI+ ++ + L R+L AV Sbjct: 86 VGYRAFINQHVIPSIGMVALHKLNVMHIQKCYKTAIDRGIANNSVLLMHRILKSALNLAV 145 Query: 149 RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSD 208 +Q ++ NP E PK++ I+ WT+E++++F S+ S+ + + + +G+R + Sbjct: 146 KQNIISRNPADFAEIPKKERTSIQTWTEEEVKKF-LLHSQESRYHIGYLLAITTGMRMGE 204 >gi|224369851|ref|YP_002604015.1| site-specific recombinase XerD (DNA replication, recombination and repair) [Desulfobacterium autotrophicum HRM2] gi|223692568|gb|ACN15851.1| site-specific recombinase XerD (DNA replication, recombination and repair) [Desulfobacterium autotrophicum HRM2] Length = 297 Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust. Identities = 44/199 (22%), Positives = 77/199 (38%), Gaps = 13/199 (6%) Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----QQFKSFWSEGSQP 192 L++++ F + V + +NP V PK + T +++ K+ + Sbjct: 82 LSALKSFFNYLVVVGKIEVNPAQGVSAPKLPRSIPQFLTVDELFTLLDSIKTRTVVDKRN 141 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM----T 248 R FE +G+R S+ V + ++ + G + +P G L A+ T Sbjct: 142 RAVFELFYSTGMRVSELSNLNVGDIDRESHLVRVRGKGNRERL-VPVGDRALKAVDDYRT 200 Query: 249 PIGKE--TFFINNDKQKMNATQFS--IWFKAKATKAGVNKSAHGVRKFSATISADAGATA 304 I E F+N D + + + + KA GV S H +R AT DAGA Sbjct: 201 CIDGEFGALFLNRDAHRFSDSSIRRVLSVLVKACGLGVPVSPHTLRHSFATHMLDAGADL 260 Query: 305 HELMATYGWKTVDQAETYT 323 + G ++ + YT Sbjct: 261 RGIQEILGHASLSSTQIYT 279 >gi|324115014|gb|EGC08979.1| phage integrase [Escherichia fergusonii B253] Length = 395 Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust. Identities = 74/340 (21%), Positives = 131/340 (38%), Gaps = 34/340 (10%) Query: 7 LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSAL-------TGSTPKRE 59 L V+++ R ++ Y G R I + + E A A+ TG+ PK+E Sbjct: 39 LKCLVSRKEGRKKFLLRYLYHGRKRAIAIGHWPEVDVNLARQIAIEHKRSLATGTDPKQE 98 Query: 60 YINSPRKKPTTLKWLISEY----RKSAH--WGSLAVNSRISFESYFDQIIRKSGDFDYRK 113 N ++ T L ++Y KSA WG + Y D I G Sbjct: 99 REN--KRMELTFDELFNQYYLPWAKSAKRSWGK-------DVQRYRDHIRPAIGQRLLSD 149 Query: 114 ITTKHIRSGVESRKHTPSSAI--QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171 IT I ++ + S+A + + ++ +F WA RQ +++P V+ + Sbjct: 150 ITPASILRLQQTLSTSLSAATCNRVIVLIKAVFTWAGRQSMTSVHPARVVQLLRENNARQ 209 Query: 172 RPWTKEDMQQFKSFWSEGSQPRLA--FEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQ 227 R +T++++++ + P A + LL +GLR + A +H+ + Sbjct: 210 RYFTEDEIRRIFLSADNDTSPVAARYVKLLLLTGLRRDELRLAKWEHVDPVKRTLWLPET 269 Query: 228 KTGTIITVELPDGFMKLLAMTPI--GKETFFINNDKQKMNATQFSIWFKAKATKAGV--- 282 K G V L M ++ P G FI KQ M + F+ +AG+ Sbjct: 270 KNGYGRIVHLNSLAMDVIRTLPTQRGNPWLFIGK-KQGMPLSNPVKAFQRIVRRAGIFDK 328 Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 H R A + G T +++ A G ++ ++ Y Sbjct: 329 EVCIHTCRHSVAALIVSYGGTLYDVQAQLGHRSSQSSQRY 368 >gi|228988955|ref|ZP_04148994.1| DNA integration/recombination/invertion protein [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229159077|ref|ZP_04287131.1| DNA integration/recombination/invertion protein [Bacillus cereus ATCC 4342] gi|228624403|gb|EEK81176.1| DNA integration/recombination/invertion protein [Bacillus cereus ATCC 4342] gi|228770774|gb|EEM19300.1| DNA integration/recombination/invertion protein [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 369 Score = 38.9 bits (89), Expect = 1.3, Method: Compositional matrix adjust. Identities = 26/120 (21%), Positives = 57/120 (47%), Gaps = 5/120 (4%) Query: 93 ISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVL---FKWAV 148 + + ++ +Q +I G K+ HI+ ++ + L R+L AV Sbjct: 86 VGYRAFINQHVIPSIGMVTLHKLNVMHIQKCYKTAIDRGIANNSVLLMHRILKSALNLAV 145 Query: 149 RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSD 208 +Q ++ NP E PK++ I+ WT+E++++F S+ S+ + + + +G+R + Sbjct: 146 KQNIISRNPADFAEIPKKERTSIQTWTEEEVKKF-LLHSQESRYHIGYLLAITTGMRMGE 204 >gi|126651787|ref|ZP_01723989.1| site-specific tyrosine recombinase XerC [Bacillus sp. B14905] gi|126591465|gb|EAZ85572.1| site-specific tyrosine recombinase XerC [Bacillus sp. B14905] Length = 355 Score = 38.9 bits (89), Expect = 1.3, Method: Compositional matrix adjust. Identities = 53/222 (23%), Positives = 90/222 (40%), Gaps = 25/222 (11%) Query: 126 RKHTPSSAIQFLTSMRVLFKWAV-RQEYVAINPCLSVERPK--RKTEGIRPWT---KEDM 179 R ++ +S + + +++ FK+ ++ + NP +E PK RK RP +E Sbjct: 121 RGNSAASRARKVATLKSFFKYLKGKRRLIEENPAEELETPKIGRK----RPIYMNFQEAT 176 Query: 180 QQFKSFWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL 237 Q + + PR F L G+R ++ C+ + +Q ++ K TV L Sbjct: 177 QFIDGIPANQASPRNYCMMMFFLNLGIRVTELCQLNITSIQGRHLTV-VGKGNKERTVYL 235 Query: 238 PDGFMKLLA------MTPI---GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK---S 285 D M+ LA TP G E F++ + + K ++G+ K + Sbjct: 236 NDSCMQALADYENSGKTPYKGNGDEPLFVSQKGTRFTRQTVAKIVKRINQQSGLQKERLT 295 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 H +R SAT+ AGA L G +V + YT D Sbjct: 296 PHKLRHTSATMMYKAGADIRSLQHILGHSSVATTQIYTHIED 337 >gi|315122495|ref|YP_004062984.1| hypothetical protein CKC_03735 [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495897|gb|ADR52496.1| hypothetical protein CKC_03735 [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 55 Score = 38.9 bits (89), Expect = 1.3, Method: Composition-based stats. Identities = 23/46 (50%), Positives = 29/46 (63%), Gaps = 1/46 (2%) Query: 284 KSAHGVRKFSATISADAGATAHELMA-TYGWKTVDQAETYTKGADR 328 + AHG+RK ATI+A+AGA+ HELMA T G K + T K R Sbjct: 2 QRAHGLRKAGATIAANAGASPHELMASTVGQKQIWLISTQEKLTQR 47 >gi|183600284|ref|ZP_02961777.1| hypothetical protein PROSTU_03843 [Providencia stuartii ATCC 25827] gi|188020074|gb|EDU58114.1| hypothetical protein PROSTU_03843 [Providencia stuartii ATCC 25827] Length = 309 Score = 38.9 bits (89), Expect = 1.3, Method: Compositional matrix adjust. Identities = 29/125 (23%), Positives = 55/125 (44%), Gaps = 12/125 (9%) Query: 112 RKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171 R + K R G+++ +S L+++R W V+Q+ ++ NP +V PK K Sbjct: 66 RNVAAKSRRKGLQA-----ASMALRLSALRSFCDWMVQQDKLSANPVTAVHAPKAKKRLP 120 Query: 172 RPWTKEDMQQFKSFWSEGSQP-----RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226 + +++ + S E P R E + +GLR S+ V+HL + ++ Sbjct: 121 KNMDVDEVSKLLSM--ESGDPLVVRDRTMLEVMYGAGLRLSELVGLDVRHLDLAMGEVRV 178 Query: 227 QKTGT 231 G+ Sbjct: 179 MGKGS 183 >gi|331082291|ref|ZP_08331417.1| hypothetical protein HMPREF0992_00341 [Lachnospiraceae bacterium 6_1_63FAA] gi|330400777|gb|EGG80378.1| hypothetical protein HMPREF0992_00341 [Lachnospiraceae bacterium 6_1_63FAA] Length = 294 Score = 38.9 bits (89), Expect = 1.3, Method: Compositional matrix adjust. Identities = 52/264 (19%), Positives = 107/264 (40%), Gaps = 23/264 (8%) Query: 90 NSRISFE---SYFDQIIRKSGDFDYRKITTKHIRSGV---ESRKHTPSSAIQFLTSMRVL 143 N+ +S+E +Q +++ G ++ +++ + S + E + SS + + S+R Sbjct: 21 NTEVSYERDLKKLEQFLKQEGILEWHQVSAVLLNSYIMYLERKNFAASSISRSVASIRAF 80 Query: 144 FKWAVRQEYVAINPCLSVERPK--RKTEGIRPWTKED--MQQFKSFWSEGSQPRLAFEFL 199 F++ ++E NP ++ PK +K GI + D + Q K ++G + R E L Sbjct: 81 FQYLCQRECWRENPAEGLKAPKIEKKAPGILTVDEVDLLLSQPKENTAKGVRDRAMLELL 140 Query: 200 LYSGLRCSDSCRAGVQ--HLQNNIFSIKTQKTGTII--------TVELPDGFMKLLAMTP 249 +G+R S+ ++ +L+ + + +I VE + + + Sbjct: 141 YATGIRVSELIHLTLRDVNLKLGYLTCSQSERERVIPFGATAKTAVEAYMAWARAELLGE 200 Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHEL 307 E F+N + M+ F K A AG+ + + H +R A GA + Sbjct: 201 NSSEWLFVNCSGKSMSRQGFWKILKGYAVSAGIQQDITPHTLRHSFAAHLVQNGADLKSV 260 Query: 308 MATYGWKTVDQAETYTK-GADRIR 330 G + + Y ++IR Sbjct: 261 QEMMGHSDISTTQIYMNMNVNKIR 284 >gi|154505593|ref|ZP_02042331.1| hypothetical protein RUMGNA_03132 [Ruminococcus gnavus ATCC 29149] gi|166032352|ref|ZP_02235181.1| hypothetical protein DORFOR_02055 [Dorea formicigenerans ATCC 27755] gi|153794032|gb|EDN76452.1| hypothetical protein RUMGNA_03132 [Ruminococcus gnavus ATCC 29149] gi|166028075|gb|EDR46832.1| hypothetical protein DORFOR_02055 [Dorea formicigenerans ATCC 27755] Length = 387 Score = 38.9 bits (89), Expect = 1.3, Method: Compositional matrix adjust. Identities = 26/111 (23%), Positives = 47/111 (42%), Gaps = 1/111 (0%) Query: 95 FESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVA 154 + Y + I K D+ I + + + ++ + + +FK+AV + Sbjct: 81 YRRYIKKQIGKQRVADFNPIILERLLQNMADDDYSTKTIRDVYNILNAMFKYAVHNRILT 140 Query: 155 INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLR 205 NPC VE PK KT+ IR T ++ ++ E L + L +G+R Sbjct: 141 FNPCAGVEVPKTKTKQIRVLTVKEQREVLEHAKERIHENL-IQVALGTGMR 190 >gi|29347677|ref|NP_811180.1| integrase protein [Bacteroides thetaiotaomicron VPI-5482] gi|29339578|gb|AAO77374.1| integrase protein [Bacteroides thetaiotaomicron VPI-5482] Length = 396 Score = 38.9 bits (89), Expect = 1.3, Method: Compositional matrix adjust. Identities = 71/313 (22%), Positives = 118/313 (37%), Gaps = 53/313 (16%) Query: 33 IRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSR 92 I P + ++F+ + ++ S+ K S R+ + L+ EY+K + L Sbjct: 98 IEKPENNGNSFLTFFKEEVSNSSLKE----STRQNHLSTLELLQEYKKDIVFTDLT---- 149 Query: 93 ISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEY 152 F S FD ++ G H+ + + KH ++ A+ +EY Sbjct: 150 FEFVSSFDNYLQSKG---------YHLNTIAKHMKH-----------LKRYVNVAINKEY 189 Query: 153 VAINPCLSVERPKRKTEGIRP-WTKEDMQQFKSFWSEGSQPRL-----AFEFLLYSGLRC 206 + I + + EG + E++ + + EG +L AF F Y+GLR Sbjct: 190 MDIQKYAFRKYKIKSIEGSHTHLSPEELNKMEEVNLEGKFTKLQKSKDAFLFCCYAGLRY 249 Query: 207 SDSCR---AGVQHLQNNIFSI-KTQKTGTIITVELPDGFM------KLLAMTPIGKETFF 256 SD A + L + I K+ KTG I V LP + ++L FF Sbjct: 250 SDFINLTAANIVELHQETWLIYKSVKTG--IDVRLPLYLLFEGKGLRVLETYKDDLNGFF 307 Query: 257 INNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWK 314 D +N A A A ++K S H R +AT+ +GA + G K Sbjct: 308 KLKDNSNVNKD-----LNALAKLAEIDKRISFHTARHTNATLLIYSGANITTVQKLLGHK 362 Query: 315 TVDQAETYTKGAD 327 +V + Y D Sbjct: 363 SVKTTQVYANIMD 375 >gi|15800482|ref|NP_286494.1| putative integrase encoded by prophage CP-933K; partial [Escherichia coli O157:H7 EDL933] gi|12513708|gb|AAG55102.1|AE005255_3 putative integrase encoded by prophage CP-933K; partial [Escherichia coli O157:H7 str. EDL933] Length = 287 Score = 38.9 bits (89), Expect = 1.3, Method: Compositional matrix adjust. Identities = 32/145 (22%), Positives = 60/145 (41%), Gaps = 2/145 (1%) Query: 93 ISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQ 150 I++ S I R D ITTK I + + + +SA +++ F+ A+ + Sbjct: 29 INYMSKIKAIRRGLPDAPLEDITTKEIAAMLNGYIDEGKAASAKLIRSTLSDAFREAIAE 88 Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSC 210 ++ NP + K + R E ++ +++ S RLA E + +G R D C Sbjct: 89 GHITTNPVAATRAAKSEVRRSRLTADEYLKIYQAAESSPCWLRLAMELAVVTGQRVGDLC 148 Query: 211 RAGVQHLQNNIFSIKTQKTGTIITV 235 + + ++ KTG I + Sbjct: 149 EMKWSDIVDGYLYVEQSKTGVKIAI 173 >gi|169828358|ref|YP_001698516.1| site-specific tyrosine recombinase XerC [Lysinibacillus sphaericus C3-41] gi|168992846|gb|ACA40386.1| Tyrosine recombinase xerC [Lysinibacillus sphaericus C3-41] Length = 320 Score = 38.9 bits (89), Expect = 1.3, Method: Compositional matrix adjust. Identities = 57/242 (23%), Positives = 98/242 (40%), Gaps = 29/242 (11%) Query: 110 DYRKITTKHIRSGVE----SRKHTPSSAIQFLTSMRVLFKWAV-RQEYVAINPCLSVERP 164 + R+IT + + +E R ++ +S + + +++ FK+ ++ + NP +E P Sbjct: 66 EIREITLEDLYYFMEYCEVQRGNSAASRARKVATLKSFFKYLKGKRRLIEENPAEELESP 125 Query: 165 K--RKTEGIRPWT---KEDMQQFKSFWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHL 217 K RK RP +E Q + PR F L G+R ++ C+ + + Sbjct: 126 KIGRK----RPIYMNFREATQFIDGIPVNQASPRNYCMMMFFLNLGIRVTELCQLNITSI 181 Query: 218 QNNIFSIKTQKTGTIITVELPDGFMKLLA------MTPI---GKETFFINNDKQKMNATQ 268 Q ++ K TV L D M+ LA TP G E F++ + Sbjct: 182 QGRHLTV-VGKGNKERTVYLNDSCMQALADYENSGKTPYKGNGDEPLFVSQKGTRFTRQT 240 Query: 269 FSIWFKAKATKAGVNK---SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 + K ++G+ K + H +R SAT+ AGA L G +V + YT Sbjct: 241 VAKIVKRINQQSGLQKERLTPHKLRHTSATMMYKAGADIRSLQHILGHSSVATTQIYTHI 300 Query: 326 AD 327 D Sbjct: 301 ED 302 >gi|312891380|ref|ZP_07750897.1| tyrosine recombinase XerD [Mucilaginibacter paludis DSM 18603] gi|311296074|gb|EFQ73226.1| tyrosine recombinase XerD [Mucilaginibacter paludis DSM 18603] Length = 299 Score = 38.9 bits (89), Expect = 1.3, Method: Compositional matrix adjust. Identities = 47/213 (22%), Positives = 87/213 (40%), Gaps = 20/213 (9%) Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS-- 187 PSS + ++ ++ +K+ + ++ +P +E PK + + D+ + Sbjct: 70 PSSQARIISGIKAFYKYLLMDNQLSYDPSELLEAPKLMRKLPDTLSIVDIDKLIDAIDLS 129 Query: 188 --EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG----- 240 EG + + E L GLR ++ + +L +I IK G + +P G Sbjct: 130 KPEGMRNKTMIEVLYGCGLRVTELVNLRISNLYLDIEFIKVLGKGNKERL-VPIGAQAIK 188 Query: 241 FMKL-----LAMTPI--GKETF-FINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVR 290 F+K+ TP+ G+E F+N +++ + K A K G+ KS H R Sbjct: 189 FLKIWLQEVRVHTPVKMGEEDIVFLNRRGNRLSRVYVFMMIKELAEKIGLKKSISPHTFR 248 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYT 323 AT + GA + G +++ E YT Sbjct: 249 HSFATHLIEGGADLRAVQEMLGHESITTTEIYT 281 >gi|253565241|ref|ZP_04842696.1| integrase [Bacteroides sp. 3_2_5] gi|251945520|gb|EES85927.1| integrase [Bacteroides sp. 3_2_5] Length = 395 Score = 38.5 bits (88), Expect = 1.4, Method: Compositional matrix adjust. Identities = 44/212 (20%), Positives = 83/212 (39%), Gaps = 32/212 (15%) Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW-TKEDMQQFKSFWSEG----SQ 191 L S+R A+R + NP + +K +G R + + E++ + + Q Sbjct: 188 LRSLRTFINIAMRYGLIKTNPFKYI--TIKKVDGKRDFLSAEELSKLSDAYISNKIIDEQ 245 Query: 192 PRLAFEFLL---YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT 248 + ++ L Y+GLR SD ++NNI I KT ++++ L ++LL Sbjct: 246 EKEVLQYFLFSCYTGLRYSDLKMLKTSSIKNNILHINMHKTNCLVSIPLSQKALQLLP-N 304 Query: 249 PIGKETFFINNDKQKMNATQFSIW--------FKAKATKAGVNK--SAHGVRKFSATISA 298 I E+ ++ F ++ K + G+ K + H R AT+S Sbjct: 305 KINSESDYV-----------FRVYCNKVTNRVLKQVGKRYGIPKKLTCHVARHTFATVSI 353 Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRIR 330 G + G ++ + Y K D ++ Sbjct: 354 ILGIPIEVVSKLLGHSSLKTTQIYAKIVDSVK 385 >gi|218441747|ref|YP_002380076.1| integrase [Cyanothece sp. PCC 7424] gi|218174475|gb|ACK73208.1| integrase family protein [Cyanothece sp. PCC 7424] Length = 294 Score = 38.5 bits (88), Expect = 1.4, Method: Compositional matrix adjust. Identities = 40/199 (20%), Positives = 83/199 (41%), Gaps = 7/199 (3%) Query: 121 SGVESRKHTPSSAIQF-LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE-GIRPWTKED 178 S +E+ + ++ ++ + +++ L + + Y+ N +V+ P K E R ++ + Sbjct: 70 SSLENSQRYKTATLKLKINTVKSLLTFGQKVGYLQFNIGSAVKPPNPKNELSSRMLSETE 129 Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL---QNNIFSIKTQKTGTIITV 235 + ++ + R+ + + G+R S+ + L N +I K G V Sbjct: 130 VTTLIEKANQNQRDRIILKLMYVCGMRVSEVVGLNWRDLVPNNNGGLAIVLGKGGKTRVV 189 Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFS 293 +P+ + P + FI+ K +++ K A +AG+N S H +R Sbjct: 190 LIPEKLWLDIQQLPKTDDAVFISRKKNRISRKTVHYMIKQYAKQAGINGNVSPHWLRHSH 249 Query: 294 ATISADAGATAHELMATYG 312 AT S + G H L + G Sbjct: 250 ATHSIERGCNLHLLQQSLG 268 >gi|298383457|ref|ZP_06993018.1| integrase [Bacteroides sp. 1_1_14] gi|298263061|gb|EFI05924.1| integrase [Bacteroides sp. 1_1_14] Length = 396 Score = 38.5 bits (88), Expect = 1.4, Method: Compositional matrix adjust. Identities = 71/314 (22%), Positives = 120/314 (38%), Gaps = 55/314 (17%) Query: 33 IRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSR 92 I P + ++F+ + ++ S+ K S R+ + L+ EY+K + L Sbjct: 98 IEKPENNGNSFLTFFKEEVSNSSLKE----STRQNHLSTLELLQEYKKDIVFTDLT---- 149 Query: 93 ISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEY 152 F S FD ++ G H+ + + KH ++ A+ +EY Sbjct: 150 FEFVSSFDNYLQSKG---------YHLNTIAKHMKH-----------LKRYVNVAINKEY 189 Query: 153 VAINPCLSVERPKRKTEGIRP-WTKEDMQQFKSFWSEG-----SQPRLAFEFLLYSGLRC 206 + I + + EG + E++ + + EG + + AF F Y+GLR Sbjct: 190 MDIQKYAFRKYKIKSIEGSHTHLSPEELNKMEEVNLEGKFTKFQKSKDAFLFCCYAGLRY 249 Query: 207 SDSCR---AGVQHLQNNIFSI-KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ 262 SD A + L + I K+ KTG I V LP L + GK + N K Sbjct: 250 SDFINLTAANIVELHQETWLIYKSVKTG--IDVRLP------LYLLFEGKGLRVLENYKD 301 Query: 263 KMNA-------TQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGW 313 +N + + A A A ++K S H R +AT+ +GA + G Sbjct: 302 DLNGFFKLKDNSNVNKDLNALAKLAEIDKRISFHTARHTNATLLIYSGANITTVQKLLGH 361 Query: 314 KTVDQAETYTKGAD 327 K+V + Y D Sbjct: 362 KSVKTTQVYANIMD 375 >gi|323697881|ref|ZP_08109793.1| tyrosine recombinase XerD [Desulfovibrio sp. ND132] gi|323457813|gb|EGB13678.1| tyrosine recombinase XerD [Desulfovibrio desulfuricans ND132] Length = 307 Score = 38.5 bits (88), Expect = 1.4, Method: Compositional matrix adjust. Identities = 53/223 (23%), Positives = 92/223 (41%), Gaps = 23/223 (10%) Query: 118 HIRS-GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176 H+R+ G++SR S + L+S+R F +AV +++ +P +E PK + ++ Sbjct: 71 HLRARGLKSR-----SLARHLSSLRGFFAFAVGEKWYKEDPGQLLENPKLPRKLPEFLSR 125 Query: 177 EDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT- 231 E++ + + G + ++ E L +GLR S+ V + +K G+ Sbjct: 126 EEISRVLALPDTSTPLGMRDKVMLELLYAAGLRVSELIGMKVLDYDPQVGMLKVFGKGSK 185 Query: 232 --IITVEL--PDGFMKLLAMTPIG---KETFFINNDKQKMNATQFSIW--FKAKATKAGV 282 +I + D + L T G +E F N K T+ +W K A AG+ Sbjct: 186 DRLIPIHYTAQDYLNRYLEFTRPGFKPREDFMFLNRSGK-GLTRQGVWKLIKKYAEAAGI 244 Query: 283 NKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 +S H R AT + GA + G + E YT Sbjct: 245 KRSISPHTFRHSFATHLLEGGADLRTVQILLGHADISATEIYT 287 >gi|302668703|ref|YP_003832528.1| tyrosine recombinase XerC2 [Butyrivibrio proteoclasticus B316] gi|302397043|gb|ADL35946.1| tyrosine recombinase XerC2 [Butyrivibrio proteoclasticus B316] Length = 352 Score = 38.5 bits (88), Expect = 1.4, Method: Compositional matrix adjust. Identities = 51/249 (20%), Positives = 105/249 (42%), Gaps = 34/249 (13%) Query: 89 VNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-------TPSSAIQFLTSMR 141 ++SRI E Y D+ I + D +++ + + ++ KH P + +FL+++ Sbjct: 59 LSSRI--EKYKDKPIPEYTLVDMMQLSCEDMDECMKWYKHPDKDVFRKPRTINRFLSTLS 116 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG---SQPRLAFE- 197 LF + V++ +A NP +V RP K + + + + QF S G ++ +L + Sbjct: 117 SLFTFYVKRRKLADNPVSAVRRPAVKRKEVNRLYEGEKSQFLSAVMNGTGLTKRQLPYHE 176 Query: 198 -----------FLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLL 245 L++G+R S+ + + S++ +K G I V L D Sbjct: 177 RQWLRDYTIARVFLFTGIRVSELVGLDISDVNLREHSLRVVRKGGNIERVYLDDE----- 231 Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKF--SATISADAGAT 303 T + + ++ ++ + +++ K + GV ++K+ + S G T Sbjct: 232 --TDLILREYLAEREEMELTDDETALFISRKKQRIGVRAVEKLIKKYQQAGLPSHPNGLT 289 Query: 304 AHELMATYG 312 H L AT+ Sbjct: 290 PHRLRATFA 298 >gi|160896902|ref|YP_001562484.1| integrase family protein [Delftia acidovorans SPH-1] gi|160362486|gb|ABX34099.1| integrase family protein [Delftia acidovorans SPH-1] Length = 365 Score = 38.5 bits (88), Expect = 1.4, Method: Compositional matrix adjust. Identities = 30/104 (28%), Positives = 44/104 (42%), Gaps = 9/104 (8%) Query: 114 ITTKHIR---SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170 + HIR + + SR +P L+ R F+WA +Q V NP V PK Sbjct: 74 LQPAHIRRFVAQMHSRGRSPRGIALILSGWRSFFRWAAQQSLVPFNPVEGVRGPKAPKPL 133 Query: 171 IRPWTKEDMQQFKSFWSEGSQPRL-----AFEFLLYS-GLRCSD 208 + +D Q +F + + P + A LLYS GLR + Sbjct: 134 PKALGVDDAVQLAAFSNAEADPWIEARDAAITELLYSCGLRVGE 177 >gi|77462917|ref|YP_352421.1| putative integrase/resolvase recombinase protein phage-related integrase [Rhodobacter sphaeroides 2.4.1] gi|77387335|gb|ABA78520.1| putative integrase/resolvase recombinase protein phage-related integrase [Rhodobacter sphaeroides 2.4.1] Length = 605 Score = 38.5 bits (88), Expect = 1.4, Method: Compositional matrix adjust. Identities = 34/152 (22%), Positives = 60/152 (39%), Gaps = 27/152 (17%) Query: 103 IRKSGDFDYRKITTKHIRSGVESRKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCL 159 +R + ++R +T + I E K + + ++L+S+ WA Y+A NPC Sbjct: 303 LRATEVAEFRGMTIRQIVEANEQAKRPVLSDRTVNRYLSSLSAFCSWAEANGYIASNPCS 362 Query: 160 SVERPKRKTEGIRPWTKEDMQQ-FKSFWSEGSQPRLAFEF-------------------L 199 + PK + P+T + M F+S G + A+ + + Sbjct: 363 GMALPKERGSKTLPFTSDQMNTLFRSPLFAGCESEAAWRYISKPGPVLIRDHRYWVPLIM 422 Query: 200 LYSGLRCSDSCRAGVQHLQNN----IFSIKTQ 227 LYSG R + + L+ IF I T+ Sbjct: 423 LYSGARPGEIAQLATSDLRQEHGRWIFHITTE 454 >gi|220926098|ref|YP_002501400.1| integrase family protein [Methylobacterium nodulans ORS 2060] gi|219950705|gb|ACL61097.1| integrase family protein [Methylobacterium nodulans ORS 2060] Length = 344 Score = 38.5 bits (88), Expect = 1.4, Method: Compositional matrix adjust. Identities = 59/298 (19%), Positives = 111/298 (37%), Gaps = 20/298 (6%) Query: 23 YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSA 82 YY+ + G R+ + P F+ ++ +A T T+ WLI +Y S Sbjct: 23 YYYHRPTGIRL-VGEPGTPEFLASFQAAAKSMTQTH--------GAGTVAWLIRQYCDSP 73 Query: 83 HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT------PSSAIQF 136 W LA +++ + K G ++ R + R H P +A Sbjct: 74 QWKKLAASTQEIGRLNLKAVEDKWGATPLEHAQSQRTRP-LYLRWHDKMAATHPRAADAK 132 Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF 196 L+++ + W V + + NP + ER + + W E + F + + RLA Sbjct: 133 LSALARVLSWGVDRGLITNNPVATFERAYKADRAEKIWLPEHVAAFNK--AASPELRLAL 190 Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFF 256 L++G R D + S++ K+G + + L P T Sbjct: 191 LLALHTGQRQGDLLQLPWSGYDGTAVSLRQGKSGRKVWIPATRALRAELDAAPRRAVTIL 250 Query: 257 INNDKQKMNATQFS-IWFKA-KATKAGVNKSAHGVRKFSATISADAGATAHELMATYG 312 D + F+ W +A +A++ + H +R + T+ ++ G+T E+ G Sbjct: 251 TKPDGESWTKDAFTWAWGRAFEASEIKDDLHFHDLRGTAVTMLSEVGSTPQEIATITG 308 >gi|320659984|gb|EFX27526.1| Phage integrase family protein [Escherichia coli O55:H7 str. USDA 5905] Length = 356 Score = 38.5 bits (88), Expect = 1.4, Method: Compositional matrix adjust. Identities = 48/215 (22%), Positives = 82/215 (38%), Gaps = 11/215 (5%) Query: 25 FRKGHGRRIRLPYPHESTFIPAYMSALTGST--PKREYINSPRKKPTTLKWLISEYRKSA 82 F G RRI + + I A + +G P INS TL + Y K Sbjct: 35 FGLGRDRRIAI-----TEAIQANIELFSGHKHKPLTARINS--DNSVTLHSWLDRYEKIL 87 Query: 83 HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKHTPSSAIQFLTSM 140 + + I++ S I R D ITTK I + + + SA +++ Sbjct: 88 ASRGIKQKTLINYMSKIKAIRRGLPDAPLEDITTKEIAAMLNGYIDEGKAVSAKLIRSTL 147 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL 200 F+ A+ + ++ NP + K + R E ++ +++ S RLA E + Sbjct: 148 SDAFREAIAEGHITTNPVAATRAAKSEVRRSRLTADEYLKIYQAAESSPCWLRLAMELAV 207 Query: 201 YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235 +G R D C + + ++ KTG I + Sbjct: 208 VTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAI 242 >gi|15897309|ref|NP_341914.1| XerC/D integrase-recombinase protein (xerC/D) [Sulfolobus solfataricus P2] gi|284174561|ref|ZP_06388530.1| XerC/D integrase-recombinase protein (xerC/D) [Sulfolobus solfataricus 98/2] gi|13813520|gb|AAK40704.1| XerC/D integrase-recombinase protein (xerC/D) [Sulfolobus solfataricus P2] gi|261601982|gb|ACX91585.1| integrase family protein [Sulfolobus solfataricus 98/2] Length = 291 Score = 38.5 bits (88), Expect = 1.4, Method: Compositional matrix adjust. Identities = 43/206 (20%), Positives = 85/206 (41%), Gaps = 20/206 (9%) Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 VE ++ + ++ ++R KW V++ P + PK + + ++ + +Q+ Sbjct: 77 VEKKRAKSVTIRYYIIAVRRFLKWI----NVSVRPPI----PKVRRKEVKALDEIQIQKV 128 Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH--LQNNIFSIKTQKTGTIITVELPDG 240 + + ++ +L LL +GLR ++ V+ L+NN+ ++ K G V D Sbjct: 129 LN-ACKRTKDKLIIRLLLDTGLRANELLSVLVKDIDLENNMIRVRNTKNGEERIVFFTDE 187 Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWF---KAKATKAGVNKSAHGVRKFSATIS 297 LL GK+ + K+ ++ + K K G++ H +R AT+S Sbjct: 188 TKLLLRKYIKGKKA------EDKLFDLKYDTLYRKLKRLGKKVGIDLRPHILRHTFATLS 241 Query: 298 ADAGATAHELMATYGWKTVDQAETYT 323 G L G K + + YT Sbjct: 242 LKRGINVITLQKLLGHKDIKTTQIYT 267 >gi|256841123|ref|ZP_05546630.1| tyrosine recombinase XerC [Parabacteroides sp. D13] gi|256736966|gb|EEU50293.1| tyrosine recombinase XerC [Parabacteroides sp. D13] Length = 302 Score = 38.5 bits (88), Expect = 1.5, Method: Compositional matrix adjust. Identities = 60/248 (24%), Positives = 106/248 (42%), Gaps = 25/248 (10%) Query: 99 FDQIIR--KSGDFDYRKITTKHIRS---GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYV 153 F + +R + G FD +I + +RS + K +P S + L+S++ FK+ +++ V Sbjct: 31 FQRYVREHREGVFDPGEIDSDFVRSWIVCLMDEKFSPVSVNRKLSSLKSFFKFLMKRGIV 90 Query: 154 AINPCLSVERPKRKTE---GIRPWTKEDMQQFKSFWS--EGSQPRLAFEFLLYSGLRCSD 208 + NP V PK K I+ E + F EG + RL E L +G+R S+ Sbjct: 91 SANPLRLVSGPKTKKPLPCFIKDSELEALLDGDGFDEDFEGVRNRLVIEMLYDTGMRRSE 150 Query: 209 SCRAGVQHLQNNIFSIKTQKTG---TIITVELPDGFMKL-LAMTPI-------GKETFFI 257 G++++ + +++ + TG + +G L LA T + E FF+ Sbjct: 151 LI--GIRNVDVDYEAMQVKVTGKRNKQRLIPFAEGLKNLMLAYTEVRDREVEAAGEWFFV 208 Query: 258 -NNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKT 315 N Q ++I K + + K S H +R AT + GA + + G + Sbjct: 209 RKNGNQLSTGIVYNIVKKQLSEIPMLAKRSPHVLRHSFATSMLNNGAELNAVKDLLGHSS 268 Query: 316 VDQAETYT 323 + YT Sbjct: 269 LASTSVYT 276 >gi|218961949|ref|YP_001741724.1| site-specific recombinase, phage integrase family [Candidatus Cloacamonas acidaminovorans] gi|167730606|emb|CAO81518.1| site-specific recombinase, phage integrase family [Candidatus Cloacamonas acidaminovorans] Length = 298 Score = 38.5 bits (88), Expect = 1.5, Method: Compositional matrix adjust. Identities = 53/255 (20%), Positives = 99/255 (38%), Gaps = 25/255 (9%) Query: 92 RISFESYFDQIIR--KSGDFDYRKITTKHIRSGVESRKHTPS---SAIQFLTSMRVLFKW 146 ++ E + I R ++G+ D + IT +IR P S + ++ F++ Sbjct: 26 KLDLEQFHSFIQRYFENGEVDIKGITVLNIRDFFRFLNEKPDCNRSLARKSAALNSFFRY 85 Query: 147 AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRLAFEFLLYS 202 R ++ NP ++RPK + + +T+E+++ S G + + E L S Sbjct: 86 CKRSGFIQNNPMEKIKRPKYEVPLPKCFTEEEVRTLLSIPDTDSPFGIRNKAILETLYSS 145 Query: 203 GLRCSDSCRAGVQHLQNNIFSIKTQKTGT---II-----TVELPDGFMKLLA--MTPIGK 252 GLR S+ +Q + ++ G I+ +E + ++K+ M Sbjct: 146 GLRISELAGIRLQDIDLKRGLVRVTGKGNKQRIVPLGSYAIEAINNYLKVRPQFMRENSP 205 Query: 253 ETFFINNDKQKMNATQFSI----WFKAKATKAGVNKSAHGVRKFSATISADAGATAHELM 308 + F+ + + Q I +F+ A G S H +R AT GA + Sbjct: 206 DLLFLTKSGKAFDTKQLDIILKRYFELVAKAKGY--SPHSLRHSFATHLLSRGADLRAIQ 263 Query: 309 ATYGWKTVDQAETYT 323 G + ETYT Sbjct: 264 ELLGHSLLSTTETYT 278 >gi|157960633|ref|YP_001500667.1| tyrosine recombinase XerD [Shewanella pealeana ATCC 700345] gi|157845633|gb|ABV86132.1| tyrosine recombinase XerD [Shewanella pealeana ATCC 700345] Length = 300 Score = 38.5 bits (88), Expect = 1.5, Method: Compositional matrix adjust. Identities = 50/254 (19%), Positives = 104/254 (40%), Gaps = 31/254 (12%) Query: 98 YFDQIIRKSGD-------FDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQ 150 + D+ ++K GD FD R + G +S+ + ++S+R + + + + Sbjct: 38 HLDRYLQKQGDDLVTCSQFDIRNYLAERFDKGF-----AKTSSARMMSSLRRFYGYLIVK 92 Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG----SQPRLAFEFLLYSGLRC 206 + + +P +E PK + ++ED+ + + + S+ + E L +GLR Sbjct: 93 KQIDSDPMALIESPKLARKLPDSLSEEDIDRLLAEPEQDDPIESRDKAMLELLYATGLRV 152 Query: 207 SD---------SCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPI-GKETFF 256 S+ S R G+ + + G + E+ + ++K + GK++ Sbjct: 153 SELVGLTMEQLSLRQGLVRITGKGGKERLVPLGELAITEI-ESYLKFARAELLKGKQSDV 211 Query: 257 INNDKQKMNATQFSIWFKAK--ATKAGVNK--SAHGVRKFSATISADAGATAHELMATYG 312 + K+ T+ + W + K A +AG++ S H +R AT + GA + G Sbjct: 212 LFPSKRAQQMTRQTFWHRIKLYALRAGISTELSPHTLRHAFATHLLNHGADLRVVQLLLG 271 Query: 313 WKTVDQAETYTKGA 326 + + YT A Sbjct: 272 HSDLSTTQIYTHVA 285 >gi|213964731|ref|ZP_03392931.1| tyrosine recombinase XerC [Corynebacterium amycolatum SK46] gi|213952924|gb|EEB64306.1| tyrosine recombinase XerC [Corynebacterium amycolatum SK46] Length = 304 Score = 38.5 bits (88), Expect = 1.5, Method: Compositional matrix adjust. Identities = 49/217 (22%), Positives = 88/217 (40%), Gaps = 22/217 (10%) Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT---EGIRPW-TKEDMQQFKSFW 186 SS + TS+R W V ++ + +P L + PK+ E + P +E +++ S Sbjct: 83 SSLARLTTSIRQFCSWLVARQILDADPSLRLSTPKKHQHLPEVLSPEKVEEAIEKVSSED 142 Query: 187 SEGSQPRLAFEFLLYS-GLRCSDSCRAGVQHLQNNIFSIKTQKTGT---IITVELP---- 238 S + LA LLY+ G+R + C+A V + + I G I+ P Sbjct: 143 SAVAARDLAIVELLYATGMRVEELCKADVSDVNFSRHIISVVGKGDKQRIVPFGAPAEAA 202 Query: 239 -DGFMKLLAMTPI---GKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSA 294 G++++ P + F+ ++N Q + + S H +R +A Sbjct: 203 LKGWLQVRGNFPASAQAEHALFLGVRGGRLNPRQAR-----RVIHKWADVSPHALRHSAA 257 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTK-GADRIR 330 T + GA + G ++ + YT ADR+R Sbjct: 258 TAMVEGGADLRVVQEMLGHSSLATTQIYTHVSADRLR 294 >gi|313202049|ref|YP_004040707.1| tyrosine recombinase xerd [Methylovorus sp. MP688] gi|312441365|gb|ADQ85471.1| tyrosine recombinase XerD [Methylovorus sp. MP688] Length = 298 Score = 38.5 bits (88), Expect = 1.5, Method: Compositional matrix adjust. Identities = 45/219 (20%), Positives = 84/219 (38%), Gaps = 27/219 (12%) Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK---------RKTEGIRPWTKEDMQ 180 P S + + S+R +++ +R+ ++++P L ++ PK + E + D+ Sbjct: 70 PRSVSRLIASLRRFYRYGLREGQISVDPTLLIDTPKLPRSLPKSLNEDEVVALLNAPDIA 129 Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSD--SCRAGVQHLQNNIFSIKTQKTGTIITVELP 238 Q + G + R E L GLR S+ R L + + + + T + Sbjct: 130 Q-----AIGLRDRAMLETLYACGLRVSELVGLRYTEVSLNEGVVRVTGKGSKTRLVPLGE 184 Query: 239 DGFMKLLAMTPIGK---------ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAH 287 + LL G+ ++ F+ + M F K A +AG++K S H Sbjct: 185 ESVDWLLRYAREGRPQILQQRVSDSLFVTQRGEAMTRQAFWYLIKRYALQAGIHKPLSPH 244 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 +R AT + GA + G + + YT A Sbjct: 245 VLRHAFATHLLNHGADLRVVQMLLGHSDISTTQIYTHVA 283 >gi|309792261|ref|ZP_07686733.1| integrase domain-containing protein [Oscillochloris trichoides DG6] gi|308225802|gb|EFO79558.1| integrase domain-containing protein [Oscillochloris trichoides DG6] Length = 301 Score = 38.5 bits (88), Expect = 1.5, Method: Compositional matrix adjust. Identities = 34/139 (24%), Positives = 61/139 (43%), Gaps = 10/139 (7%) Query: 114 ITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173 ITT I+S ++SR P + + + S+ F+WAV + Y NP + +P Sbjct: 40 ITTLDIQSFLDSRNEQPGTTNRRIASLGRFFRWAVARGYCLYNPLEQIAGRYHTEHRPQP 99 Query: 174 WTKE-DMQQFKSFWSEGSQP-RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231 E + + + + SQP RL F L G+R + L N+ + + Sbjct: 100 IVSEAERRALDTAIAACSQPYRLIFTLLREIGVRTDEV-------LNLNVGDVILETGRE 152 Query: 232 IITV-ELPDGFMKLLAMTP 249 ++ V + G +++A+TP Sbjct: 153 VLLVQDTKSGNKRMVALTP 171 >gi|288916689|ref|ZP_06411064.1| integrase family protein [Frankia sp. EUN1f] gi|288351944|gb|EFC86146.1| integrase family protein [Frankia sp. EUN1f] Length = 406 Score = 38.5 bits (88), Expect = 1.5, Method: Compositional matrix adjust. Identities = 45/204 (22%), Positives = 75/204 (36%), Gaps = 33/204 (16%) Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 +P S + + AVR Y+ NP VERPK WTKE Q ++F Sbjct: 137 SPGSVAVVHRVLHRALRDAVRWNYLVRNPSDDVERPKLDRRVPTVWTKE---QLRTFVDH 193 Query: 189 GSQPRLAFEFL--LYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL-- 244 RL +L + +GLR + + ++ + + ++ + DG K Sbjct: 194 VRGDRLYALYLVAITTGLRRGALVGLRRHDVDLDAGTLSSSRPRIVVDNKAVDGEHKTDS 253 Query: 245 ----LAMTPIGKETFFINNDKQKMNATQFSI---------------------WFKAKATK 279 L + P+ + ++ D+ + T+F WF+A A Sbjct: 254 AYRPLVLDPVTAKALRVHVDRWEQERTEFGFTTDLLFCWPDGTGIHPDTVTDWFQAHAKS 313 Query: 280 AGVNK-SAHGVRKFSATISADAGA 302 AG+ H VR AT + +G Sbjct: 314 AGLPVIRLHDVRHSYATAALKSGV 337 >gi|254701722|ref|ZP_05163550.1| Phage integrase [Brucella suis bv. 5 str. 513] gi|261752275|ref|ZP_05995984.1| conserved hypothetical protein [Brucella suis bv. 5 str. 513] gi|261742028|gb|EEY29954.1| conserved hypothetical protein [Brucella suis bv. 5 str. 513] Length = 341 Score = 38.5 bits (88), Expect = 1.6, Method: Compositional matrix adjust. Identities = 56/266 (21%), Positives = 101/266 (37%), Gaps = 15/266 (5%) Query: 62 NSPRKKPTTLKW--LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD-----FDYRKI 114 N R P K+ +I+ Y+ S + LA +++ ++ + D+I +K GD FD + Sbjct: 46 NDSRVIPDASKFRAVITAYKSSHDYQKLADSTKRNWNGWLDRIGKKFGDLSIAQFDLPQK 105 Query: 115 TTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRP 173 IR P +A + + + +AV ++ NPC +++ + Sbjct: 106 IRPVIRKWRGEFADKPRTADYGMQVLSRVLSYAVDPLGKISQNPCEGIKQLYKNDRAAII 165 Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII 233 T +D+ + K+ S + A + ++GLR D R H+ +N + T K+ Sbjct: 166 RTDQDIARLKTKCS--PEVAWAVDLAAHTGLRAGDLLRLSWSHITDNAIILPTGKSRHTK 223 Query: 234 TVELP--DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWF---KAKATKAGVNKSAHG 288 +P LL P N K F F + +A + H Sbjct: 224 EAVIPLYAELRALLQTIPRRSPIVLTNTRKAPWTVNGFGSSFSDCREEAKLGDRDLHFHD 283 Query: 289 VRKFSATISADAGATAHELMATYGWK 314 R +AT AG + + GW+ Sbjct: 284 FRGTAATKFYIAGLSERVIAEIMGWE 309 >gi|149199882|ref|ZP_01876911.1| phage integrase family protein [Lentisphaera araneosa HTCC2155] gi|149137053|gb|EDM25477.1| phage integrase family protein [Lentisphaera araneosa HTCC2155] Length = 441 Score = 38.5 bits (88), Expect = 1.6, Method: Compositional matrix adjust. Identities = 58/254 (22%), Positives = 94/254 (37%), Gaps = 34/254 (13%) Query: 102 IIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV 161 +++ SG F+ R I+ K + E ++ +PS+ +++T ++ +F + + INP + Sbjct: 128 LLKDSGKFNKRIISKKGSYTS-EIKELSPSTINEYMTHIKQVFTLLHDRANLLINPFDGI 186 Query: 162 -----ERPKRKTEGIRPWTK-EDMQQFKSFWSEGSQPRLAFEFL-------LYSGLRCSD 208 ++ KR I TK D W S P+L L L +GLR D Sbjct: 187 PKVDGKKKKRDVFEISELTKINDFLVKGKSWKYSSNPKLDILILRTLFIVGLNTGLRRGD 246 Query: 209 SCRAG--VQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA-----------MTPIGKETF 255 C L N S++ KT +++ + M L + P + + Sbjct: 247 ICMLDWPSVDLDKNRISLENSKTEVFVSIPISAPLMTFLNERHAITGGSGFVVPELADMY 306 Query: 256 FINNDKQKMNATQFSIWFKAKATK-------AGVNKSAHGVRKFSATISADAGATAHELM 308 N+D Q K K TK A NK H +R + G + EL Sbjct: 307 QNNSDGISYRFRQMLDKLKIKNTKEVTGRTVAVSNKDIHSLRHTFCYLHGIQGTSIQELQ 366 Query: 309 ATYGWKTVDQAETY 322 G T E Y Sbjct: 367 LMTGHLTPKMTEAY 380 >gi|297242743|ref|ZP_06926681.1| site-specific recombinase XerD [Gardnerella vaginalis AMD] gi|296888954|gb|EFH27688.1| site-specific recombinase XerD [Gardnerella vaginalis AMD] Length = 322 Score = 38.5 bits (88), Expect = 1.6, Method: Compositional matrix adjust. Identities = 52/245 (21%), Positives = 96/245 (39%), Gaps = 38/245 (15%) Query: 113 KITTKHIRS--GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170 ++TT +RS ESR H SS + + ++R F W EY++ NP + PK K Sbjct: 64 ELTTDDLRSWMADESRSHARSSLARKVVAVRGFFAWCQHVEYISSNPAEILMTPKIKN-- 121 Query: 171 IRPWTKEDMQQFKSFWSEGSQPRLA-----------------FEFLLYSGLRCSDSCRAG 213 + P ++ Q + S+ ++ E L +G+R + Sbjct: 122 MLPSVLDEYQAESLMNNVDSKANVSSSCTKNQKAVGLRNAAILELLYATGIRVGELTSLN 181 Query: 214 VQHLQNNIFSIKTQKTGT---IITVELP-----------DGFMKLLAMTPIGKETFFINN 259 +Q + + +IK G ++ +P DG LL + +E F+ Sbjct: 182 IQDINFSSHTIKVTGKGNKQRVVPFGVPAYKALSAWISKDGREILLRNSV--EEAAFLGT 239 Query: 260 DKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318 ++++ +A A V + S H +R +AT + GA E+ G +++ Sbjct: 240 RGKRIDQRLVRRIVHDEAKSAHVPDISPHALRHSAATHMLNGGADLREVQELLGHSSLNT 299 Query: 319 AETYT 323 + YT Sbjct: 300 TQRYT 304 >gi|295110002|emb|CBL23955.1| Site-specific recombinase XerD [Ruminococcus obeum A2-162] Length = 354 Score = 38.5 bits (88), Expect = 1.6, Method: Compositional matrix adjust. Identities = 38/194 (19%), Positives = 83/194 (42%), Gaps = 25/194 (12%) Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-----SEGSQ 191 ++++R + + ++E + NP + ++ PK + I +++ + S Q Sbjct: 119 ISALRSFYAYYYKREMIHSNPTVLIDVPKIHDKSIIRLDTDEVALLLDYIEHCGDSLTGQ 178 Query: 192 PRLAFE-----------FLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELP 238 R+ +E LL +G+R S+ ++ + +NN + T+K G + V Sbjct: 179 KRVYYEKTKERDLAIVTLLLGTGIRVSECVGLDIEDVDFKNNGIKV-TRKGGNEMVVYFG 237 Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISA 298 + K L K + + + ++++ A+ + GV + V+K+S I+ Sbjct: 238 EEVEKAL------KRYLEVRAGITPLAGHEHALFYSAQRKRMGVQAVENMVKKYSRQITT 291 Query: 299 DAGATAHELMATYG 312 T H+L +TYG Sbjct: 292 TKKITPHKLRSTYG 305 >gi|237725482|ref|ZP_04555963.1| integrase [Bacteroides sp. D4] gi|229436169|gb|EEO46246.1| integrase [Bacteroides dorei 5_1_36/D4] Length = 383 Score = 38.5 bits (88), Expect = 1.6, Method: Compositional matrix adjust. Identities = 72/284 (25%), Positives = 117/284 (41%), Gaps = 46/284 (16%) Query: 72 KWLISEYRKSAHWGSLAVNS--RISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH- 128 +WL +KS+ G VNS + +F+ D IR D DY +R+ ++R + Sbjct: 104 RWLEDNGKKSSIRG---VNSIRKATFQFRGDVPIRML-DKDYCMAFMNFLRNDYKARTNR 159 Query: 129 --TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF---- 182 + ++A ++T + + WAVR +Y++ NP + R RP +K + Q Sbjct: 160 TISMTTATGYVTVLSAMLNWAVRNDYLSENPFTHIAAADRIH---RPESKREFLQIDELK 216 Query: 183 KSFWSEG-SQPRL--AFEFLLYSGLRCSDSCRA--GVQHLQNN---IFSIKTQKTGTIIT 234 K +E ++P + AF F Y LR SD G H + +F++ +KT I Sbjct: 217 KLIATECPTRPAVKQAFLFSCYCALRISDVIGLTWGDIHKDGDQWRVFTV-MEKTNDPIY 275 Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKM----NATQFSIWFKAKATKAGVNK------ 284 + L MK L K D+ K+ + ++ I A AG+NK Sbjct: 276 LPLSKQAMKWLPERGDAK-------DEDKVFDLPSESRICIILDKWAKAAGINKHVTYHV 328 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 S H T+ D T+ L G K + + Y K D+ Sbjct: 329 SRHTFATMMLTLDVDIYTTSKLL----GHKNISTTQIYAKIIDQ 368 >gi|295426272|ref|ZP_06818932.1| tyrosine recombinase XerC [Lactobacillus amylolyticus DSM 11664] gi|295064011|gb|EFG54959.1| tyrosine recombinase XerC [Lactobacillus amylolyticus DSM 11664] Length = 307 Score = 38.5 bits (88), Expect = 1.6, Method: Compositional matrix adjust. Identities = 48/243 (19%), Positives = 99/243 (40%), Gaps = 24/243 (9%) Query: 104 RKSGDF-DYRKITTKHIRSGVES---RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINP-- 157 R++G F D+ KI T+ I ++S RK + +S ++ ++S+R +++ +++ + ++P Sbjct: 40 RENGGFVDWDKIQTRDIEVYLQSMAERKLSRNSQMRKMSSLRSFYRFLAKRKLIKVDPTQ 99 Query: 158 --CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQ 215 L E K P K+ + + + + FE +G+R S+ + Sbjct: 100 TIVLRTEERKLPQFFYAPEMKQVISSLQGNTALTERNLALFELFYTTGMRVSEVSSLKIN 159 Query: 216 HLQNNIFSIKTQ-------------KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ 262 + ++ I KT + + L + KLL + ++ F+NN Q Sbjct: 160 QVDFDLQMILVHGKGNKDRYVAFDDKTKSALQNYLENARPKLLG-SKADQDFIFLNNQGQ 218 Query: 263 KMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAE 320 + + KAG++ H +R AT + GA + G + + + Sbjct: 219 PLTDRGIEYIMQRTFNKAGISGKVHPHELRHTFATAMLNNGADLRTVQELLGHENLSTTQ 278 Query: 321 TYT 323 YT Sbjct: 279 IYT 281 >gi|282852078|ref|ZP_06261436.1| tyrosine recombinase XerD [Lactobacillus gasseri 224-1] gi|282556838|gb|EFB62442.1| tyrosine recombinase XerD [Lactobacillus gasseri 224-1] Length = 296 Score = 38.5 bits (88), Expect = 1.6, Method: Compositional matrix adjust. Identities = 52/271 (19%), Positives = 111/271 (40%), Gaps = 28/271 (10%) Query: 89 VNSRISFESYFDQIIRK---SGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFK 145 ++ R E Y D + + S + DY + + + + +S + ++S+R ++ Sbjct: 24 ISYRTDLEEYLDYLQDQNETSWEVDY--LVVDAFLATQKDKGKATTSISRMISSLRKFYQ 81 Query: 146 WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRLAFEFLLY 201 W +RQ+ + +P + ++ PK + ++E++ + + G + R E L Sbjct: 82 WLLRQDIIERDPLVKIDSPKSERRLPTALSEEEVDKLLAAPDTNTPLGIRDRAMLEVLYA 141 Query: 202 SGLRCSD--SCRAGVQHLQNNIFSI--KTQKTGTIITVELPDGFM-------KLLAMTPI 250 +G+R S+ + R G H I + K K + E+ ++ + + Sbjct: 142 TGMRVSELINLRTGDIHADLKIIRVLGKGSKERLVPITEVALSWLEKYQTDVRDAQVLKS 201 Query: 251 GK--ETFFINNDKQKMNATQFSIWFKAK--ATKAGVNKSA--HGVRKFSATISADAGATA 304 G+ + F+NN ++ T+ ++W K K G+ K+ H +R AT + GA Sbjct: 202 GQFTDVIFLNNHGHQL--TRQAVWQKIKKYCQLIGITKNVTPHTLRHTFATHLLENGADL 259 Query: 305 HELMATYGWKTVDQAETYTKGADRIRLGIKN 335 + G + + YT + L + N Sbjct: 260 RVVQEILGHSDITTTQIYTNLTQKHILEVYN 290 >gi|315619082|gb|EFU99663.1| integrase [Escherichia coli 3431] Length = 231 Score = 38.5 bits (88), Expect = 1.7, Method: Compositional matrix adjust. Identities = 25/107 (23%), Positives = 48/107 (44%) Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 +SA +++ +F+ A+ + +VA NP + K + R E ++ + + Sbjct: 12 ASAKLIRSTLVDVFREAIAEGHVATNPVTATRTAKSEVRRSRLTANEYVEIYHAAEPLPI 71 Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL 237 RLA + + +G R D CR + +N I+ KTG + + L Sbjct: 72 WLRLAMDLAVVTGQRVGDLCRMKWSDINDNHLHIEQSKTGAKLAIPL 118 >gi|229110029|ref|ZP_04239606.1| DNA integration/recombination/invertion protein [Bacillus cereus Rock1-15] gi|228673382|gb|EEL28649.1| DNA integration/recombination/invertion protein [Bacillus cereus Rock1-15] Length = 369 Score = 38.5 bits (88), Expect = 1.7, Method: Compositional matrix adjust. Identities = 26/118 (22%), Positives = 58/118 (49%), Gaps = 5/118 (4%) Query: 95 FESYFDQ-IIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVL---FKWAVRQ 150 ++++ +Q +I G K+ HI+ ++ + L R+L AV+Q Sbjct: 88 YKAFINQHVIPSIGMVALHKLNVMHIQKCYKAAIDKGIANNSILLMHRILKSALNLAVKQ 147 Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSD 208 ++ NP E PK++ I+ WT+E++++F + S+ S+ + + + +G+R + Sbjct: 148 NIISRNPTDFAEIPKKEKTPIQTWTEEEVKKFLAH-SQESRYHIGYLLAITTGMRLGE 204 >gi|126661716|ref|ZP_01732715.1| tyrosine type site-specific recombinase [Flavobacteria bacterium BAL38] gi|126625095|gb|EAZ95784.1| tyrosine type site-specific recombinase [Flavobacteria bacterium BAL38] Length = 408 Score = 38.5 bits (88), Expect = 1.7, Method: Compositional matrix adjust. Identities = 45/209 (21%), Positives = 85/209 (40%), Gaps = 17/209 (8%) Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF--KSF-WS 187 +S +++ +++ + +A+R E + NP ++ K K E T+E+++ K+F Sbjct: 189 NSVVKYFKNLKTICNYAIRMELIDKNP-FNIYNGKIKVEEATFLTQEELESIENKTFKID 247 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAG----VQHLQNNI-FSIKTQKTGTIITVELPDGFM 242 + + F F Y+G D+ + +Q + + QKT T V + + Sbjct: 248 RLERVKDIFLFSCYTGYAPVDAIKLTRKNIIQDTEKTLWIKANRQKTNTKANVPILPPVL 307 Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAH---GVRKFSATISAD 299 K++ +T QKMNA + K A G+ K F+ T++ Sbjct: 308 KIINKYQFYGDTLLPKISNQKMNA-----YLKEIADIIGLEKKLTWYVARHTFATTVTLG 362 Query: 300 AGATAHELMATYGWKTVDQAETYTKGADR 328 G + A G T+ Q + Y K D+ Sbjct: 363 NGIRIENVSAMLGHTTIKQTQHYAKILDQ 391 >gi|228961935|ref|ZP_04123475.1| DNA integration/recombination/invertion protein [Bacillus thuringiensis serovar pakistani str. T13001] gi|228797758|gb|EEM44831.1| DNA integration/recombination/invertion protein [Bacillus thuringiensis serovar pakistani str. T13001] Length = 369 Score = 38.5 bits (88), Expect = 1.7, Method: Compositional matrix adjust. Identities = 26/118 (22%), Positives = 58/118 (49%), Gaps = 5/118 (4%) Query: 95 FESYFDQ-IIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVL---FKWAVRQ 150 ++++ +Q +I G K+ HI+ ++ + L R+L AV+Q Sbjct: 88 YKAFINQHVIPSIGMVTLHKLNVIHIQKCYKTAIDKGIANNSILLMHRILKSALNLAVKQ 147 Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSD 208 ++ NP E PK++ I+ WT+E++++F + S+ S+ + + + +G+R + Sbjct: 148 NIISRNPADFAEIPKKEKTPIQTWTEEEVKKFLAH-SQESRYHIGYLLAITTGMRLGE 204 >gi|285019408|ref|YP_003377119.1| shufflon-specific DNA recombinase [Xanthomonas albilineans GPE PC73] gi|283474626|emb|CBA17125.1| putative shufflon-specific dna recombinase protein [Xanthomonas albilineans] Length = 364 Score = 38.5 bits (88), Expect = 1.7, Method: Compositional matrix adjust. Identities = 54/247 (21%), Positives = 96/247 (38%), Gaps = 15/247 (6%) Query: 92 RISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQE 151 R S + ++I K D + K + + +P++ L + LF A+++ Sbjct: 97 RYSLAALTPELIAKYRDDRLAGLDRKDAKGKPAPKPRSPNTVRLDLALLGHLFNVAIKEW 156 Query: 152 YVAI--NPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF--EFLLYSGLRCS 207 + + NP S+ RP R T+E+ + S P L + L +G+R S Sbjct: 157 GIGLTYNPVQSIRRPAPSPGRDRRLTREEEIRLMVAVDAHSNPMLGWIVRIALETGMRSS 216 Query: 208 D--SCRAGVQHLQNNIFSIKTQKTG----TIITVELPDGFMKLL--AMTPIGKETFFINN 259 + R L + ++ K +TVE F + L + PI + F Sbjct: 217 EITGLRRSQVDLDRRVARLQETKNTMSRTVPLTVEATRLFREALNNPVRPIDTDLIFFGE 276 Query: 260 D--KQKMNATQFS-IWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTV 316 K A QF+ IW + K + H +R + + +AG + E+ A G K++ Sbjct: 277 PGRDNKRRAYQFNPIWMRIKKDAGLPDFRFHDLRHEAVSRFVEAGLSDQEVAAISGHKSM 336 Query: 317 DQAETYT 323 + YT Sbjct: 337 QMLKRYT 343 >gi|268319286|ref|YP_003292942.1| bacteriophage integrase [Lactobacillus johnsonii FI9785] gi|262397661|emb|CAX66675.1| bacteriophage integrase [Lactobacillus johnsonii FI9785] Length = 390 Score = 38.1 bits (87), Expect = 1.8, Method: Compositional matrix adjust. Identities = 28/97 (28%), Positives = 45/97 (46%), Gaps = 10/97 (10%) Query: 137 LTSMRVLFKWAVRQEYVAINPCLSV------ERPKRKTEGIRPWTKEDMQQFKSFWSE-G 189 + LF++ +R YV+ NP + RP+R TE +T++++ QF E G Sbjct: 138 INEFNALFEYGIRLNYVSENPLKRIIIPKKTSRPRRDTEH-NVYTRDELNQFLEVAKEYG 196 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSI 224 F+ L +GLR S++ Q L NN S+ Sbjct: 197 LVQYTYFKLLSSTGLRKSEALALTWQDIDLNNNTLSV 233 >gi|30020683|ref|NP_832314.1| DNA integration/recombination/invertion protein [Bacillus cereus ATCC 14579] gi|31415821|ref|NP_852561.1| DNA integration/recombination/invertion protein [Bacillus phage phBC6A52] gi|229127965|ref|ZP_04256949.1| DNA integration/recombination/invertion protein [Bacillus cereus BDRD-Cer4] gi|29896235|gb|AAP09515.1| DNA integration/recombination/invertion protein [Bacillus cereus ATCC 14579] gi|228655527|gb|EEL11381.1| DNA integration/recombination/invertion protein [Bacillus cereus BDRD-Cer4] Length = 369 Score = 38.1 bits (87), Expect = 1.8, Method: Compositional matrix adjust. Identities = 26/118 (22%), Positives = 58/118 (49%), Gaps = 5/118 (4%) Query: 95 FESYFDQ-IIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVL---FKWAVRQ 150 ++++ +Q +I G K+ HI+ ++ + L R+L AV+Q Sbjct: 88 YKAFINQHVIPSIGMVTLHKLNVIHIQKCYKTAIDKGIANNSILLMHRILKSALNLAVKQ 147 Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSD 208 ++ NP E PK++ I+ WT+E++++F + S+ S+ + + + +G+R + Sbjct: 148 NIISRNPADFAEIPKKEKTPIQTWTEEEVKKFLAH-SQESRYHIGYLLAITTGMRLGE 204 >gi|308271884|emb|CBX28492.1| hypothetical protein N47_G38160 [uncultured Desulfobacterium sp.] Length = 311 Score = 38.1 bits (87), Expect = 1.8, Method: Compositional matrix adjust. Identities = 49/229 (21%), Positives = 101/229 (44%), Gaps = 19/229 (8%) Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER--PKRKTEGIRPWTKEDMQQFKS 184 K +P+ A + L ++ LF+ AV ++++ NP +++ +K + I P +ED+ +F Sbjct: 95 KKSPTQANKELKMIKRLFQHAVERDWLETNPAKNIKLLPVSKKRKYIPP--QEDIIKF-- 150 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE----LPDG 240 + R F ++Y+ R + + + ++ +KT+K E + + Sbjct: 151 -MVSAGKDRFYFLTIVYTLARMREINYLKWEDVYSDYLILKTRKARNSDLTERRIPINEI 209 Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISAD 299 +L P E F N+ + + + + K +AG+ + S H +R + A+ A+ Sbjct: 210 LKYILEQLPKKGEYVFCQNNGKPYDCRKRLMAGICK--RAGIKRFSFHSLRHYGASKLAE 267 Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348 AGA + A G +TY + LG+K + ++S+ P Sbjct: 268 AGAPLTAIQAILGHSRATTTDTYLQS-----LGMKKTEVMNSLTIKSPP 311 >gi|323486023|ref|ZP_08091354.1| phage integrase [Clostridium symbiosum WAL-14163] gi|323400590|gb|EGA92957.1| phage integrase [Clostridium symbiosum WAL-14163] Length = 359 Score = 38.1 bits (87), Expect = 1.8, Method: Compositional matrix adjust. Identities = 19/72 (26%), Positives = 39/72 (54%), Gaps = 2/72 (2%) Query: 138 TSMRVLFKWAVRQEYVAINPCLSV-ERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF 196 + + +AV + +NPC + K K + + WT+++ ++F + S+ S +LAF Sbjct: 137 NQLSAIMNYAVSHYRLPVNPCRAAGSMGKSKADEMNIWTQKEYERFSNAISKSSM-KLAF 195 Query: 197 EFLLYSGLRCSD 208 + L Y+G+R + Sbjct: 196 DILFYTGMRSGE 207 >gi|270011279|gb|EFA07727.1| hypothetical protein TcasGA2_TC002205 [Tribolium castaneum] Length = 241 Score = 38.1 bits (87), Expect = 1.8, Method: Compositional matrix adjust. Identities = 31/121 (25%), Positives = 51/121 (42%), Gaps = 13/121 (10%) Query: 227 QKTGTIITVELPDGFMKLLAMTPIG--KETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284 +K G + V L + + + + P FFIN K+K I K A V K Sbjct: 106 RKAGKLENVNLLELVRRYMEIRPTKTPHNRFFINYTKEKCTIQPVGI-HKIGGVPATVAK 164 Query: 285 ----------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIK 334 + H R+ SA++ A+AGAT + GW++ AE Y + + ++ + Sbjct: 165 YLGLENASSYTGHCFRRSSASLLANAGATMERIKRHGGWRSTTVAEGYIEECENTKIKVA 224 Query: 335 N 335 N Sbjct: 225 N 225 >gi|270005006|gb|EFA01454.1| hypothetical protein TcasGA2_TC007000 [Tribolium castaneum] Length = 390 Score = 38.1 bits (87), Expect = 1.8, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 2/62 (3%) Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344 + H +R+ SAT+ DAGA L GW++ AETY + + I+ + +IS+++ Sbjct: 255 TGHCLRRSSATLLVDAGADITALKRHGGWRSTTVAETYIDHS--LNNKIQTANKISNIIQ 312 Query: 345 SD 346 S+ Sbjct: 313 SE 314 >gi|167762266|ref|ZP_02434393.1| hypothetical protein BACSTE_00619 [Bacteroides stercoris ATCC 43183] gi|167699909|gb|EDS16488.1| hypothetical protein BACSTE_00619 [Bacteroides stercoris ATCC 43183] Length = 373 Score = 38.1 bits (87), Expect = 1.8, Method: Compositional matrix adjust. Identities = 56/217 (25%), Positives = 88/217 (40%), Gaps = 23/217 (10%) Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ-- 181 ++RK +SA + ++ R R + NP +ER E I P KE + Q Sbjct: 153 KNRKLHINSAANYWSTFRASIHITYRDRKIKENPNGFLER----IETI-PTDKEHLSQDE 207 Query: 182 -FKSFWSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQ----NNIFSIKT--QKTGTI 232 + + S P L AF F + LR SD + + +Q + + + T QKT I Sbjct: 208 VIRLASTPCSAPALKRAFLFSCLTALRKSDIKKLTWEEIQPYGSDGVMYVTTRMQKTKDI 267 Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290 + + + ++L+ +P + F + K M W K AG+ K S H R Sbjct: 268 VHNPISEEALELIGYSPDKRGKVFPDF-KDSMTQAPLKNWLK----DAGITKHISYHCSR 322 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 A + DAG + + G K V E Y K +D Sbjct: 323 HSFACLQLDAGTSIAVVQRYLGHKNVATTEVYAKISD 359 >gi|223043159|ref|ZP_03613206.1| tyrosine recombinase XerD [Staphylococcus capitis SK14] gi|314933674|ref|ZP_07841039.1| tyrosine recombinase XerD [Staphylococcus caprae C87] gi|222443370|gb|EEE49468.1| tyrosine recombinase XerD [Staphylococcus capitis SK14] gi|313653824|gb|EFS17581.1| tyrosine recombinase XerD [Staphylococcus caprae C87] Length = 295 Score = 38.1 bits (87), Expect = 1.9, Method: Compositional matrix adjust. Identities = 52/251 (20%), Positives = 103/251 (41%), Gaps = 28/251 (11%) Query: 95 FESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVA 154 +E Y ++ DF R++ + + ++ + + S A +F++++R ++A+R+ Y A Sbjct: 33 YEEYLEERKISHIDFVDRQVIQECLGHLIDLGQSSKSLA-RFISTIRSFHQFALRERYAA 91 Query: 155 INPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-------SEGSQPRLAFEFLLYSGLRCS 207 +P + +E P K E P E +Q+ + G + R E L +G+R S Sbjct: 92 KDPTVLIETP--KYEKKLPDVLE-VQEVLDLLETPDLSKNNGYRDRTMLELLYATGMRVS 148 Query: 208 DSCRAGVQHLQNNIFSIKTQKTGTII-TVELPDGFMKLLA----------MTPIGKETFF 256 + + V+ + + ++ G V L D ++ L + F Sbjct: 149 EIIQLEVEDVNLMMGFVRVFGKGNKERIVPLGDAVIEYLTTYIETVRPQLLKQTVTHVLF 208 Query: 257 INNDKQKMNATQFSIW--FKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYG 312 +N + + ++ IW K KA +NK+ H +R AT + GA + G Sbjct: 209 LNMHGKPL--SRQGIWKMIKQNGIKANINKTLTPHTLRHSFATHLLENGADLRAVQEMLG 266 Query: 313 WKTVDQAETYT 323 + + YT Sbjct: 267 HSDISTTQLYT 277 >gi|228908344|ref|ZP_04072189.1| DNA integration/recombination/invertion protein [Bacillus thuringiensis IBL 200] gi|228851385|gb|EEM96194.1| DNA integration/recombination/invertion protein [Bacillus thuringiensis IBL 200] Length = 369 Score = 38.1 bits (87), Expect = 1.9, Method: Compositional matrix adjust. Identities = 26/118 (22%), Positives = 58/118 (49%), Gaps = 5/118 (4%) Query: 95 FESYFDQ-IIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVL---FKWAVRQ 150 ++++ +Q +I G K+ HI+ ++ + L R+L AV+Q Sbjct: 88 YKAFINQHVIPSIGIVALHKLNVIHIQKCYKTAIDKGIANNSILLMHRILKSALNLAVKQ 147 Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSD 208 ++ NP E PK++ I+ WT+E++++F + S+ S+ + + + +G+R + Sbjct: 148 NIISRNPADFAEIPKKEKTPIQTWTEEEVKKFLAH-SQESRYHIGYLLAITTGMRLGE 204 >gi|148379636|ref|YP_001254177.1| phage integrase [Clostridium botulinum A str. ATCC 3502] gi|237795099|ref|YP_002862651.1| site-specific recombinase, phage integrase family [Clostridium botulinum Ba4 str. 657] gi|148289120|emb|CAL83214.1| phage integrase [Clostridium botulinum A str. ATCC 3502] gi|229262802|gb|ACQ53835.1| site-specific recombinase, phage integrase family [Clostridium botulinum Ba4 str. 657] Length = 349 Score = 38.1 bits (87), Expect = 2.0, Method: Compositional matrix adjust. Identities = 27/104 (25%), Positives = 51/104 (49%), Gaps = 9/104 (8%) Query: 108 DFDYRKITTKHIR---SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV-ER 163 D + IT +IR + + S+ + + + +F +A++ + NP L Sbjct: 95 DMNVNNITPNNIRKWQNKLMSKDYKQTYLKAVNKQLNAIFNFAIKYYNLNSNPALKAGPM 154 Query: 164 PKRKTEGIRPWTKEDMQQFKSFWSEGSQP--RLAFEFLLYSGLR 205 K+ +EG++ WT ++++K F P +LAFE L ++GLR Sbjct: 155 GKKDSEGMQFWT---LEEYKEFIKCVDNPMCKLAFEILFWTGLR 195 >gi|182417143|ref|ZP_02948516.1| integrase/recombinase, phage integrase family [Clostridium butyricum 5521] gi|237667184|ref|ZP_04527168.1| phage integrase [Clostridium butyricum E4 str. BoNT E BL5262] gi|182378985|gb|EDT76491.1| integrase/recombinase, phage integrase family [Clostridium butyricum 5521] gi|237655532|gb|EEP53088.1| phage integrase [Clostridium butyricum E4 str. BoNT E BL5262] Length = 332 Score = 38.1 bits (87), Expect = 2.0, Method: Compositional matrix adjust. Identities = 26/91 (28%), Positives = 47/91 (51%), Gaps = 7/91 (7%) Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPC--LSVER-PKRKTEGIRPWTKEDMQQFKSFW 186 PS+ L S++ F+W ++E + NP LS R PKR + + T E++++ + Sbjct: 114 PSTVNNKLASLKAFFEWMEQEEIIPKNPARHLSGTRLPKRLRKSL---TIEELEKIR-LV 169 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL 217 + + R+ EFL +G R S+ +A + L Sbjct: 170 CKDVRERVLIEFLFATGCRISEVVKANISDL 200 >gi|58580222|ref|YP_199238.1| phage integrase family site specific recombinase [Xanthomonas oryzae pv. oryzae KACC10331] gi|58424816|gb|AAW73853.1| site-specific recombinase, phage integrase family [Xanthomonas oryzae pv. oryzae KACC10331] Length = 400 Score = 38.1 bits (87), Expect = 2.0, Method: Compositional matrix adjust. Identities = 62/277 (22%), Positives = 108/277 (38%), Gaps = 22/277 (7%) Query: 63 SPRKKPTTLKWLISEYRKSAHWGSLAVN-SRISFESYFDQIIRKSGDFDYRKITTKHIRS 121 SP K+P + S+ R H L N + S + ++I K D + K + Sbjct: 109 SPTKRPASAD---SDAR---HAKPLMQNLGKYSLAALTPELIAKYRDDRLAGLDRKDAKG 162 Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAI--NPCLSVERPKRKTEGIRPWTKEDM 179 + +P++ L + LF A+++ + + NP S+ RP R T+E+ Sbjct: 163 KPAPKPRSPNTVRLDLALLGHLFNVAIKEWGIGLTYNPVQSIRRPAPSPGRDRRLTREEE 222 Query: 180 QQFKSFWSEGSQPRLAF--EFLLYSGLRCSD--SCRAGVQHLQNNIFSIKTQKTG----T 231 + + S P L + L +G+R S+ R L + ++ K Sbjct: 223 TRLMAAVDAHSNPMLGWIVRIALETGMRSSEITGLRRNQVDLDRRVVRLQETKNTMSRTV 282 Query: 232 IITVELPDGFMKLL--AMTPIGKETFFINND--KQKMNATQFS-IWFKAKATKAGVNKSA 286 +TVE F + L + PI F K A QF+ IW + K + Sbjct: 283 PLTVEATRLFREALNNPVRPIDTNLIFFGEPGRDNKRRAYQFNPIWTRIKKDAGVPDFRF 342 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 H +R + + +AG + E+ A G K++ + YT Sbjct: 343 HDLRHEAVSRFVEAGLSDQEVAAISGHKSMQMLKRYT 379 >gi|149916304|ref|ZP_01904824.1| site-specific recombinase, phage integrase family protein [Roseobacter sp. AzwK-3b] gi|149809758|gb|EDM69610.1| site-specific recombinase, phage integrase family protein [Roseobacter sp. AzwK-3b] Length = 363 Score = 38.1 bits (87), Expect = 2.0, Method: Compositional matrix adjust. Identities = 51/238 (21%), Positives = 94/238 (39%), Gaps = 30/238 (12%) Query: 110 DYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAIN------PCLSVER 163 D RK+T + ++ + P S + + +R + + A Y I+ P L + Sbjct: 117 DLRKLTKE-----MQDLGYAPGSVNRTVVILRGMLRRADDWGYCKIHSSLQKPPNLLPDH 171 Query: 164 PKRKTEGIRPWTKEDMQQFKSFWSE-GSQP-RLAFEFLLYSGLRCSDSCRAGVQHLQ--N 219 P+ + R ++E+ Q+ ++ G+ P LA FLLY+G R S+ A H+ Sbjct: 172 PRHE----RFLSREEAQRLQAVLQRRGATPVNLAILFLLYTGARRSEVLNADWAHVDFAR 227 Query: 220 NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKE-----------TFFINNDKQKMNATQ 268 + I K G TV L D + +L ++ T F N ++ Sbjct: 228 QEWRIPISKNGRPRTVILSDRAVDILEQARAYQQRHFVKQARSVSTVFANPQTRQPYHNI 287 Query: 269 FSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 + W + +A + H +R A+ +AG + +E+ G + + Y A Sbjct: 288 WETWKRVRAEADLTDVRLHDLRHSYASTLINAGVSIYEVQKLLGHTNITTTQRYAHLA 345 >gi|149276499|ref|ZP_01882643.1| site-specific recombinase [Pedobacter sp. BAL39] gi|149233019|gb|EDM38394.1| site-specific recombinase [Pedobacter sp. BAL39] Length = 292 Score = 38.1 bits (87), Expect = 2.0, Method: Compositional matrix adjust. Identities = 60/267 (22%), Positives = 106/267 (39%), Gaps = 33/267 (12%) Query: 86 SLAVNSRISFES-------YFDQIIRKSGDFDYRKITTKHIR---SGVESRKHTPSSAIQ 135 +L+VNS ++ S YFD +D +++ T ++ S V P + + Sbjct: 12 ALSVNSISAYISDVKKLFEYFDS---TGKSYDIQEVNTSDLKLFISWVNELGMLPVTQAR 68 Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----QQFKSFWSEGSQ 191 ++ ++ F + ++ ++ +P S+E P+ + E++ Q +EG + Sbjct: 69 VISGIKSYFSFLSLEQLISSDPASSLETPRLNKKLPDTLNIEEINAMIQAIDHSKAEGLR 128 Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG--FMKLLAM-- 247 R E L GLR S+ + + ++ N IK G + +P G +K + M Sbjct: 129 SRAMLEVLYGCGLRVSELIQMKISNIFINSEFIKVVGKGDKERI-IPIGSAALKYIMMYI 187 Query: 248 ------TPI--GKETF-FINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATI 296 PI G+E F F+N + K A AG+ K S H R AT Sbjct: 188 NEVRIEVPIKKGQEDFVFLNRRGTALTRMLIFNMIKGLAKDAGIQKNISPHTFRHSFATH 247 Query: 297 SADAGATAHELMATYGWKTVDQAETYT 323 + GA + G ++ E YT Sbjct: 248 LIEGGADLRAVQEMLGHSSITTTEIYT 274 >gi|192824211|ref|YP_001994852.1| gp35 [Mycobacterium phage Pukovnik] gi|190610441|gb|ACE79961.1| gp35 [Mycobacterium phage Pukovnik] Length = 377 Score = 38.1 bits (87), Expect = 2.1, Method: Compositional matrix adjust. Identities = 48/223 (21%), Positives = 83/223 (37%), Gaps = 30/223 (13%) Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 K P++ +R + AV + + NPC +E+ + T E++ Sbjct: 136 KDYPTARRHAYNVLRAVMNTAVEDKLLTENPC-RIEQKTAAERDVEALTPEELDIVAGEV 194 Query: 187 SEGSQPRLAFEFLLYSGLRCSD-----------------------SCRAGVQHLQNNIFS 223 E R+A L ++ LR + + R G + + N + Sbjct: 195 FE--HYRIAVYILAWTSLRFGELIELRRKDIDDDGETMLFRVRRGAARVGEKIVVGNTKT 252 Query: 224 IKTQKTGTII--TVELPDGFMKLLAMTPIGKETFFINN-DKQKMNATQFSIWFKAKATKA 280 +++++ T+ E+ MK G E + KQ+++ + F+ K K Sbjct: 253 VRSKRPVTVPPHVAEMVREHMKDRTKMNKGPEALLVTTTQKQRLSKSAFTRSLKKGYRKI 312 Query: 281 G-VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 G + H +R AT +A AGAT ELM G T A Y Sbjct: 313 GRTDLRVHDLRAVGATYAAQAGATTKELMVRLGHTTPRMAMKY 355 >gi|30063432|ref|NP_837603.1| putative integrase for prophage CP-933U [Shigella flexneri 2a str. 2457T] gi|56480016|ref|NP_707880.2| putative integrase for prophage CP-933U [Shigella flexneri 2a str. 301] gi|30041685|gb|AAP17412.1| putative integrase for prophage CP-933U [Shigella flexneri 2a str. 2457T] gi|56383567|gb|AAN43587.2| putative integrase for prophage CP-933U [Shigella flexneri 2a str. 301] Length = 281 Score = 38.1 bits (87), Expect = 2.1, Method: Compositional matrix adjust. Identities = 36/159 (22%), Positives = 67/159 (42%), Gaps = 6/159 (3%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR-KHTPSS 132 L ++ SA++ L+ ++ + + +++ G I +HIR ++ R + + + Sbjct: 6 LWEKFLASAYYSDLSPRTQKDYLQHQKKLLAVFGKVPADSIKPEHIRRYMDKRGEQSKTQ 65 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192 A +SM ++ W + YV NPC V + K K KE +++ S P Sbjct: 66 ANHEKSSMSRVYSWGYERGYVKANPCAGVSKFKAKNRERYVTDKE----YQAVLSVAPLP 121 Query: 193 R-LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230 +A E R SD + + N+ I+ KTG Sbjct: 122 VFIAMEIAYLCAARVSDVLSLKWEQIGNDGIFIQQGKTG 160 >gi|95928522|ref|ZP_01311269.1| phage integrase [Desulfuromonas acetoxidans DSM 684] gi|95135312|gb|EAT16964.1| phage integrase [Desulfuromonas acetoxidans DSM 684] Length = 417 Score = 38.1 bits (87), Expect = 2.1, Method: Compositional matrix adjust. Identities = 36/112 (32%), Positives = 52/112 (46%), Gaps = 10/112 (8%) Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF-KS 184 R+ + S+A Q L+ + LF+ A+ Q V NPC V RPK R + ++ +F K+ Sbjct: 172 RRISGSTAKQALSLLSKLFQCAIDQHLVDANPCDGVRRPKVNRSRERYLSGDEYPRFIKA 231 Query: 185 FWSEGSQPRL-AFEFLLYSGLRCSDS-----CRAGVQHLQNNIFSIKTQKTG 230 S +P+ A L GLR S+ C HL +N IK K G Sbjct: 232 TMSLIDRPQAKAIMILAVLGLRPSEVLGLAWCDV---HLIDNRIHIKQAKNG 280 >gi|229079787|ref|ZP_04212320.1| DNA integration/recombination/invertion protein [Bacillus cereus Rock4-2] gi|228703627|gb|EEL56080.1| DNA integration/recombination/invertion protein [Bacillus cereus Rock4-2] Length = 369 Score = 38.1 bits (87), Expect = 2.1, Method: Compositional matrix adjust. Identities = 26/118 (22%), Positives = 58/118 (49%), Gaps = 5/118 (4%) Query: 95 FESYFDQ-IIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVL---FKWAVRQ 150 ++++ +Q +I G K+ HI+ ++ + L R+L AV+Q Sbjct: 88 YKAFINQHVIPSIGMVALHKLNVIHIQKCYKTAIDKGIANNSILLMHRILKSALNLAVKQ 147 Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSD 208 ++ NP E PK++ I+ WT+E++++F + S+ S+ + + + +G+R + Sbjct: 148 NIISRNPADFAEIPKKEKTPIQTWTEEEVKKFLAH-SQESRYHIGYLLAITTGMRLGE 204 >gi|284008137|emb|CBA74367.1| phage integrase [Arsenophonus nasoniae] Length = 338 Score = 38.1 bits (87), Expect = 2.1, Method: Compositional matrix adjust. Identities = 39/160 (24%), Positives = 73/160 (45%), Gaps = 15/160 (9%) Query: 7 LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66 +PP R G+ Y F+ +GR IRL + A S + +Y+N K Sbjct: 13 MPP-----RVFRGRSAYEFKHPNGRTIRL------CALNADKSVVWSHY--EQYVND-EK 58 Query: 67 KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126 + LI+++ SA + L+ +++ ++ Y ++I G + I +HIR ++ R Sbjct: 59 HIFNYESLINQFLCSADFIELSKDTQNDYQKYSKKVIPVFGKMNPDNIKPEHIRKYMDKR 118 Query: 127 K-HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK 165 + + A + + M +F+W + V NPC V++ K Sbjct: 119 GLKSRTQANREKSFMSRVFRWGYERGLVKNNPCKGVKQYK 158 >gi|218236017|ref|YP_002367298.1| DNA integration/recombination/invertion protein [Bacillus cereus B4264] gi|218163974|gb|ACK63966.1| site-specific recombinase, phage integrase family [Bacillus cereus B4264] Length = 369 Score = 38.1 bits (87), Expect = 2.1, Method: Compositional matrix adjust. Identities = 26/118 (22%), Positives = 57/118 (48%), Gaps = 5/118 (4%) Query: 95 FESYFDQ-IIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVL---FKWAVRQ 150 + ++ +Q +I G K+ HI+ ++ + L R+L AV+Q Sbjct: 88 YRAFINQHVIPSIGMVALHKLNVMHIQKCYKNAIDKGIANNSILLMHRILKSALNLAVKQ 147 Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSD 208 ++ NP E PK++ I+ WT+E++++F + S+ S+ + + + +G+R + Sbjct: 148 NIISRNPADFAEIPKKEKTPIQTWTEEEVKKFLAH-SQESRYHIGYLLAITTGMRLGE 204 >gi|170730010|ref|YP_001775443.1| site-specific tyrosine recombinase XerC [Xylella fastidiosa M12] gi|167964803|gb|ACA11813.1| site-specific recombinase [Xylella fastidiosa M12] Length = 277 Score = 38.1 bits (87), Expect = 2.1, Method: Compositional matrix adjust. Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 3/88 (3%) Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 R +P S + L++ R + W V+ ++A+NP + PK + R ++ F Sbjct: 46 RGLSPKSLQRRLSACRGFYAWLVKSGHIAVNPAAGLRAPKALRKLPRILDADEAVSFVQI 105 Query: 186 WSE---GSQPRLAFEFLLYSGLRCSDSC 210 ++ G + R E SGLR S+ C Sbjct: 106 PTDTPLGLRDRALLELFYSSGLRLSELC 133 >gi|71274748|ref|ZP_00651036.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella fastidiosa Dixon] gi|71901196|ref|ZP_00683299.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella fastidiosa Ann-1] gi|71164480|gb|EAO14194.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella fastidiosa Dixon] gi|71729040|gb|EAO31168.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella fastidiosa Ann-1] Length = 277 Score = 38.1 bits (87), Expect = 2.1, Method: Compositional matrix adjust. Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 3/88 (3%) Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 R +P S + L++ R + W V+ ++A+NP + PK + R ++ F Sbjct: 46 RGLSPKSLQRRLSACRGFYAWLVKSGHIAVNPAAGLRAPKALRKLPRILDADEAVSFVQI 105 Query: 186 WSE---GSQPRLAFEFLLYSGLRCSDSC 210 ++ G + R E SGLR S+ C Sbjct: 106 PTDTPLGLRDRALLELFYSSGLRLSELC 133 >gi|284006600|emb|CBA71861.1| phage integrase [Arsenophonus nasoniae] Length = 297 Score = 38.1 bits (87), Expect = 2.2, Method: Compositional matrix adjust. Identities = 29/130 (22%), Positives = 56/130 (43%), Gaps = 10/130 (7%) Query: 110 DYRKITTKHIRSGVES--RKHTPSSAIQF-LTSMRVLFKWAVRQEYVAINPCLSVERPKR 166 D+ ++ T H+R V R+ ++++ L+S+R W V Q + NP ++ PK Sbjct: 44 DWAQLETSHVRMMVAKCRRQGLQAASLALRLSSLRSFLDWLVGQGLITANPAKTIRAPKN 103 Query: 167 KTEGIRPWTKEDMQQFKSFWSEGSQP-----RLAFEFLLYSGLRCSDSCRAGVQHLQNNI 221 K + +++ Q + + + P R E + +GLR S+ QHL Sbjct: 104 KRHLPKNIDVDEVNQLLNI--DLADPLSVRDRTMLEVMYGAGLRLSELINLNCQHLDLQS 161 Query: 222 FSIKTQKTGT 231 ++ G+ Sbjct: 162 GEVRVMGKGS 171 >gi|258538870|ref|YP_003173369.1| phage-related integrase [Lactobacillus rhamnosus Lc 705] gi|257150546|emb|CAR89518.1| Phage-related integrase [Lactobacillus rhamnosus Lc 705] Length = 383 Score = 38.1 bits (87), Expect = 2.2, Method: Compositional matrix adjust. Identities = 47/201 (23%), Positives = 81/201 (40%), Gaps = 34/201 (16%) Query: 43 FIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISF------- 95 F+ A LTG + KK L S + A GSL+ N ++F Sbjct: 19 FVSAGTDELTGKKRRIHKRGFRDKKEAALA--ASRFTLDADAGSLSTNRSMTFKAVYLEW 76 Query: 96 ESYFDQIIRKS-----------------GDFDYRKITTKHIRSGVES-RKHTPSSAIQFL 137 ++ + +R+S G+ KITT ++ V K + ++L Sbjct: 77 DAAYKNTVRESTYERTYIQIKKHVLPLFGNKPINKITTAQLQQAVNQWSKQVTRNYRRWL 136 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTE----GIRPWTKEDMQQFKSFWSEGSQPR 193 T+ + ++A+R+ Y+ NP V PK K + W K+++ +F S+ +P+ Sbjct: 137 TTASRILRFALRRGYINKNPADLVIIPKEKEQIGDVAANFWDKQELTRFFSYIDAKQEPQ 196 Query: 194 --LAFEFLLYSGLRCSDSCRA 212 F L + GLR + C A Sbjct: 197 KTALFRILAFGGLRRGE-CLA 216 >gi|85059134|ref|YP_454836.1| putative phage integrase [Sodalis glossinidius str. 'morsitans'] gi|84779654|dbj|BAE74431.1| putative phage integrase [Sodalis glossinidius str. 'morsitans'] Length = 281 Score = 38.1 bits (87), Expect = 2.2, Method: Compositional matrix adjust. Identities = 39/196 (19%), Positives = 73/196 (37%), Gaps = 4/196 (2%) Query: 36 PYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISF 95 P ES + + K E + + +KP T L ++ S ++ L ++ + Sbjct: 28 PTSSESITLTLIKDGIAAVWKKYEEVVNQARKPITFSQLWEKFISSTYFIELKPRTQQDY 87 Query: 96 ESYFDQIIRKSGDFDYRKITTKHIRSGVESRK-HTPSSAIQFLTSMRVLFKWAVRQEYVA 154 + ++ G+ I +H+R ++ R + A + SM +++W + YV Sbjct: 88 MQHQKKLFSVFGEMKADGIKPEHVREFMDKRGLQRKTQANHEMASMSRVYRWGYERGYVK 147 Query: 155 INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGV 214 NPC V + K R D + + + ++A E R SD Sbjct: 148 ANPCAGVMKFKAVK---RDRHITDEEYLAIYRAADDIVKIAMEIAYLCAARLSDVLGMKW 204 Query: 215 QHLQNNIFSIKTQKTG 230 Q + I+ KTG Sbjct: 205 QQITEQGIFIQQGKTG 220 >gi|160934351|ref|ZP_02081738.1| hypothetical protein CLOLEP_03222 [Clostridium leptum DSM 753] gi|156867024|gb|EDO60396.1| hypothetical protein CLOLEP_03222 [Clostridium leptum DSM 753] Length = 357 Score = 38.1 bits (87), Expect = 2.3, Method: Compositional matrix adjust. Identities = 50/230 (21%), Positives = 89/230 (38%), Gaps = 40/230 (17%) Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV-ERPKRKTEGIRPWTKEDMQ 180 G + ++P + +F AVR + NPC K+K + WTKE+ Sbjct: 118 GDNGKPYSPVYLKTIHNQLSAIFNHAVRYYNLKENPCQKAGSMGKKKNREMLFWTKEEYL 177 Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSD----------------SCRAGVQHL--QNNIF 222 +F + AFE L ++G+R + + QHL ++ I Sbjct: 178 KFADAMMDKPMSYYAFEMLYWTGIREGELLAITPADFDFEKRTVTINKSFQHLNGRDIIT 237 Query: 223 SIKTQKTGTIITVELP-------DGFMKLLAMTPIGKETFFINND--KQKMNATQFSIWF 273 S KT+K+ T++LP ++K+L + F + ++MN Sbjct: 238 SPKTEKSNR--TIQLPKFLCDEMQDYLKMLYDVGLEDRMFPVTKSYLHREMNRG------ 289 Query: 274 KAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 A +AGV + H +R ++ D G +A + G +++D Y Sbjct: 290 ---AKEAGVKRIRIHDIRHSHVSLLIDMGFSATAIADRVGHESIDITYNY 336 >gi|227890200|ref|ZP_04008005.1| possible bacteriophage integrase [Lactobacillus johnsonii ATCC 33200] gi|227849295|gb|EEJ59381.1| possible bacteriophage integrase [Lactobacillus johnsonii ATCC 33200] Length = 391 Score = 37.7 bits (86), Expect = 2.3, Method: Compositional matrix adjust. Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 8/81 (9%) Query: 137 LTSMRVLFKWAVRQEYVAINPCLSV------ERPKRKTEGIRPWTKEDMQQFKSFWSE-G 189 + LF++ +R YV+ NP + RP+R TE +T++++ QF + G Sbjct: 138 INEFNALFEYGIRLNYVSENPLKRIIIPKKTSRPRRDTEH-NVYTRDELNQFLEVAKDYG 196 Query: 190 SQPRLAFEFLLYSGLRCSDSC 210 P F+ L +GLR S++ Sbjct: 197 LVPYTYFKLLSATGLRKSEAL 217 >gi|167946117|ref|ZP_02533191.1| site-specific tyrosine recombinase XerD [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 223 Score = 37.7 bits (86), Expect = 2.3, Method: Compositional matrix adjust. Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 9/84 (10%) Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS---- 187 S+ + L+ MR +++AVR+ ++ +P +E PKR + R + S+W Sbjct: 61 SSARLLSCMRQFYQYAVRESLLSADPSAQIESPKRASPVTR--APSLSARLSSYWRPPTW 118 Query: 188 ---EGSQPRLAFEFLLYSGLRCSD 208 +G + R E L +GLR S+ Sbjct: 119 AILQGVRDRTMLELLYATGLRVSE 142 >gi|116629539|ref|YP_814711.1| integrase [Lactobacillus gasseri ATCC 33323] gi|238852689|ref|ZP_04643099.1| tyrosine recombinase XerD [Lactobacillus gasseri 202-4] gi|311110818|ref|ZP_07712215.1| tyrosine recombinase XerD [Lactobacillus gasseri MV-22] gi|116095121|gb|ABJ60273.1| tyrosine recombinase XerD subunit [Lactobacillus gasseri ATCC 33323] gi|238834835|gb|EEQ27062.1| tyrosine recombinase XerD [Lactobacillus gasseri 202-4] gi|311065972|gb|EFQ46312.1| tyrosine recombinase XerD [Lactobacillus gasseri MV-22] Length = 302 Score = 37.7 bits (86), Expect = 2.3, Method: Compositional matrix adjust. Identities = 52/271 (19%), Positives = 111/271 (40%), Gaps = 28/271 (10%) Query: 89 VNSRISFESYFDQIIRK---SGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFK 145 ++ R E Y D + + S + DY + + + + +S + ++S+R ++ Sbjct: 30 ISYRTDLEEYLDYLQDQNETSWEVDY--LVVDAFLATQKDKGKATTSISRMISSLRKFYQ 87 Query: 146 WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRLAFEFLLY 201 W +RQ+ + +P + ++ PK + ++E++ + + G + R E L Sbjct: 88 WLLRQDIIERDPLVKIDSPKSERRLPTALSEEEVDKLLAAPDTNTPLGIRDRAMLEVLYA 147 Query: 202 SGLRCSD--SCRAGVQHLQNNIFSI--KTQKTGTIITVELPDGFM-------KLLAMTPI 250 +G+R S+ + R G H I + K K + E+ ++ + + Sbjct: 148 TGMRVSELINLRTGDIHADLKIIRVLGKGSKERLVPITEVALSWLEKYQTDVRDAQVLKS 207 Query: 251 GK--ETFFINNDKQKMNATQFSIWFKAK--ATKAGVNKSA--HGVRKFSATISADAGATA 304 G+ + F+NN ++ T+ ++W K K G+ K+ H +R AT + GA Sbjct: 208 GQFTDVIFLNNHGHQL--TRQAVWQKIKKYCQLIGITKNVTPHTLRHTFATHLLENGADL 265 Query: 305 HELMATYGWKTVDQAETYTKGADRIRLGIKN 335 + G + + YT + L + N Sbjct: 266 RVVQEILGHSDITTTQIYTNLTQKHILEVYN 296 >gi|298484751|ref|ZP_07002852.1| predicted peptidase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298160720|gb|EFI01740.1| predicted peptidase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 731 Score = 37.7 bits (86), Expect = 2.4, Method: Compositional matrix adjust. Identities = 57/240 (23%), Positives = 93/240 (38%), Gaps = 20/240 (8%) Query: 75 ISEYRKSAHWGSLAVNSRI---SFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131 IS+Y + H A+N+R+ S ES Q ++ D I H+R +ES KH S Sbjct: 145 ISDYLQRQHMP--AINARLFSDSLESDLKQYAFQNNRSDTLAII-GHLRR-IESNKHGVS 200 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191 + + F T L +W + Q + N S R + + W + Sbjct: 201 AILPFKTKSSDLDEWLIDQVFSDENQTTSSYRSTLR--ALSHWLAAQEKPGLCDPDYLHS 258 Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA-MTPI 250 L + L +S L C A +QH++N K + T +PD L++ I Sbjct: 259 HELTGDVLKFSCLPGRHQCSAALQHMRNYDLGSKVRLKKQRDTRNIPDEDQTLISHYQKI 318 Query: 251 GKETFFINNDK--QKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELM 308 + I N K +K N + + V+K A +R FSA + + + L+ Sbjct: 319 ANDALVIKNSKAGKKTN--------RDPHGRTSVDKYASVLRSFSAWLKEEGKGSLSTLL 370 >gi|289191137|dbj|BAI77471.1| PsvA protein [Pseudomonas syringae pv. myricae] Length = 731 Score = 37.7 bits (86), Expect = 2.4, Method: Compositional matrix adjust. Identities = 57/240 (23%), Positives = 93/240 (38%), Gaps = 20/240 (8%) Query: 75 ISEYRKSAHWGSLAVNSRI---SFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131 IS+Y + H A+N+R+ S ES Q ++ D I H+R +ES KH S Sbjct: 145 ISDYLQRQHMP--AINARLFSDSLESDLKQYAFQNNRSDTLAII-GHLRR-IESNKHGVS 200 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191 + + F T L +W + Q + N S R + + W + Sbjct: 201 AILPFKTKSSDLDEWLIDQVFSDENQTTSSYRSTLR--ALSHWLAAQEKPGLCDPDYLHS 258 Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA-MTPI 250 L + L +S L C A +QH++N K + T +PD L++ I Sbjct: 259 HELTEDVLKFSCLPGRHQCSAALQHMRNYDLGSKVRLKKQRDTRNIPDEDQTLISHYQKI 318 Query: 251 GKETFFINNDK--QKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELM 308 + I N K +K N + + V+K A +R FSA + + + L+ Sbjct: 319 ANDALVIKNSKAGKKTN--------RDPHGRTSVDKYASVLRSFSAWLKEEGKGSLSTLL 370 >gi|296503148|ref|YP_003664848.1| DNA integration/recombination/invertion protein [Bacillus thuringiensis BMB171] gi|296324200|gb|ADH07128.1| DNA integration/recombination/invertion protein [Bacillus thuringiensis BMB171] Length = 369 Score = 37.7 bits (86), Expect = 2.4, Method: Compositional matrix adjust. Identities = 26/118 (22%), Positives = 58/118 (49%), Gaps = 5/118 (4%) Query: 95 FESYFDQ-IIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVL---FKWAVRQ 150 ++++ +Q +I G K+ HI+ ++ + L R+L AV+Q Sbjct: 88 YKAFINQHVIPSIGMVALHKLNVIHIQKCYKTAIDKGIANNSILLMHRILKSALNLAVKQ 147 Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSD 208 ++ NP E PK++ I+ WT+E++++F + S+ S+ + + + +G+R + Sbjct: 148 NIISRNPTDFAEIPKKEKTPIQTWTEEEVKKFLAH-SQESRYHIGYLLAITTGMRLGE 204 >gi|270014460|gb|EFA10908.1| hypothetical protein TcasGA2_TC001734 [Tribolium castaneum] Length = 1600 Score = 37.7 bits (86), Expect = 2.5, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 2/62 (3%) Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344 + H +R+ SAT+ DAGA L GW++ AETY + + I+ + +IS+++ Sbjct: 255 TGHCLRRSSATLLVDAGADITALKRHGGWRSTTVAETYIDHS--LNNKIQTANKISNIIQ 312 Query: 345 SD 346 S+ Sbjct: 313 SE 314 >gi|6472619|dbj|BAA87062.1| ORF3 [Pseudomonas syringae] Length = 731 Score = 37.7 bits (86), Expect = 2.5, Method: Compositional matrix adjust. Identities = 57/240 (23%), Positives = 93/240 (38%), Gaps = 20/240 (8%) Query: 75 ISEYRKSAHWGSLAVNSRI---SFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131 IS+Y + H A+N+R+ S ES Q ++ D I H+R +ES KH S Sbjct: 145 ISDYLQRQHMP--AINARLFSDSLESDLKQYAFQNNRSDTLAII-GHLRR-IESNKHGVS 200 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191 + + F T L +W + Q + N S R + + W + Sbjct: 201 AILPFKTKSSDLDEWLIDQVFSDENQTTSSYRSTLR--ALSHWLAAQEKPGLCDPDYLHS 258 Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA-MTPI 250 L + L +S L C A +QH++N K + T +PD L++ I Sbjct: 259 HELTEDVLKFSCLPGRHQCSAALQHMRNYDLGSKVRLKKQRDTRNIPDEDQTLISHYQKI 318 Query: 251 GKETFFINNDK--QKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELM 308 + I N K +K N + + V+K A +R FSA + + + L+ Sbjct: 319 ANDALVIKNSKAGKKTN--------RDPHGRTSVDKYASVLRSFSAWLKEEGKGSLSTLL 370 >gi|259416936|ref|ZP_05740856.1| putative phage integrase [Silicibacter sp. TrichCH4B] gi|259348375|gb|EEW60152.1| putative phage integrase [Silicibacter sp. TrichCH4B] Length = 507 Score = 37.7 bits (86), Expect = 2.5, Method: Compositional matrix adjust. Identities = 57/279 (20%), Positives = 109/279 (39%), Gaps = 29/279 (10%) Query: 67 KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD---FDYRKITTKHIRSGV 123 + + L L++ Y + W S + S+ + E IR SG+ + +K + + Sbjct: 214 QESQLSNLLASYMLAKKWDSRKIKSKTTAERQIKAFIRSSGNPCVTEVKKSMAYDLAREL 273 Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPC--LSVERPKRKTEGIRPWTKEDMQQ 181 E+ + S +++ + W + + NP L++ KT+ RP+ + Q Sbjct: 274 EAEGKSNSLIRSTISAASAMLTWCELEGTIDANPLVHLNLSDFGTKTKHYRPF---EPAQ 330 Query: 182 FKSFWSEG--SQPRLAFEFLLYSGLRCSDSC---------RAGVQHLQNNIFSIKTQKTG 230 S ++ Q RL E L+ +G+R ++ R G+++ + +K + + Sbjct: 331 LHSLFAMKMPEQERLLLEILVTTGMRLDEAALLTWDQVKERNGIRYFDLSDAIVKNKASA 390 Query: 231 TIITVELPDGFMKLLAMTPIGKETFF---INNDKQKMN-ATQFSIWFKAKATKAGVNKSA 286 + V LPD L + P G F ++ D + N A++ K ++ Sbjct: 391 RL--VALPD----CLTLPPQGTGRLFDYTLDADGKASNRASRVLGGLIKKVPNKHKSQVL 444 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 H +R + DAG + G D A TY G Sbjct: 445 HSLRGTLKDLLRDAGVSKETNDYITGHSGSDVASTYGSG 483 >gi|254515505|ref|ZP_05127565.1| tyrosine recombinase XerC [gamma proteobacterium NOR5-3] gi|219675227|gb|EED31593.1| tyrosine recombinase XerC [gamma proteobacterium NOR5-3] Length = 311 Score = 37.7 bits (86), Expect = 2.5, Method: Compositional matrix adjust. Identities = 52/235 (22%), Positives = 101/235 (42%), Gaps = 24/235 (10%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT- 129 L++L S R S+H + SFE + Q +G D + H+R + T Sbjct: 19 LEYLRSVRRLSSHTVTAYRRDLDSFEDFCQQH-SVTGCSD---VQESHVRQWLAQGHRTG 74 Query: 130 --PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 P+S + L+++R F+W NP L+V+ P+++ + P T E Q + Sbjct: 75 LAPNSLQRRLSALRAYFQWESSDTGQRRNPALAVQAPRKRRK--LPGTLEADQVGVYLRA 132 Query: 188 EGSQP----RLAFEFLLY-SGLRCSDSCRAGVQHLQ--NNIFSI--KTQKTGTI----IT 234 + + P LA LLY SGLR ++ + + ++ S+ K KT T+ I Sbjct: 133 DDNDPLQLRDLAMAELLYSSGLRLAELRAVNIHDIDRSQSLISVTGKGSKTRTVPVGRIA 192 Query: 235 VELPDGFM--KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAH 287 +E D ++ + + ++ F++ ++++ + A + G+ + H Sbjct: 193 IEAIDAYLPHRPTPTSAADEQALFVSGRGRRISERSIQARIQLLAQRNGLGRDVH 247 >gi|237712751|ref|ZP_04543232.1| integrase [Bacteroides sp. D1] gi|262406796|ref|ZP_06083345.1| integrase [Bacteroides sp. 2_1_22] gi|294645845|ref|ZP_06723527.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CC 2a] gi|294807491|ref|ZP_06766290.1| site-specific recombinase, phage integrase family [Bacteroides xylanisolvens SD CC 1b] gi|298484331|ref|ZP_07002493.1| integrase [Bacteroides sp. D22] gi|229447202|gb|EEO52993.1| integrase [Bacteroides sp. D1] gi|262355499|gb|EEZ04590.1| integrase [Bacteroides sp. 2_1_22] gi|292638811|gb|EFF57147.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CC 2a] gi|294445307|gb|EFG13975.1| site-specific recombinase, phage integrase family [Bacteroides xylanisolvens SD CC 1b] gi|295087263|emb|CBK68786.1| Site-specific recombinase XerD [Bacteroides xylanisolvens XB1A] gi|298269521|gb|EFI11120.1| integrase [Bacteroides sp. D22] Length = 396 Score = 37.7 bits (86), Expect = 2.5, Method: Compositional matrix adjust. Identities = 68/308 (22%), Positives = 113/308 (36%), Gaps = 49/308 (15%) Query: 36 PYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISF 95 P + S+F+ + + S K S R+ + L+ E++K + L F Sbjct: 101 PLSNGSSFLTFFKEEVANSLLKE----STRQNHLSTLELLQEFKKEILFTDLT----FEF 152 Query: 96 ESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAI 155 S FD ++ G H+ + + KH ++ A+ +EY+ I Sbjct: 153 VSSFDNHLQSKG---------YHLNTIAKHMKH-----------LKRYINVAINKEYMDI 192 Query: 156 NPCLSVERPKRKTEGIRP-WTKEDMQQFKSFWSEGSQPRL-----AFEFLLYSGLRCSD- 208 + + EG E++ +F++ G RL AF F Y+GLR SD Sbjct: 193 QKYAFRKYKIKSIEGSHTHLAPEELYRFENLQLTGRYTRLQKTKDAFLFCCYAGLRYSDF 252 Query: 209 ---SCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM------KLLAMTPIGKETFFINN 259 + V+ Q K+ KTG I V LP + ++L ++FF Sbjct: 253 TSLTSANIVEFHQETWIIYKSVKTG--IEVRLPLYLLFEGKGIEILQRYKDDLDSFFKLK 310 Query: 260 DKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319 D +N + A K S H R +AT+ +GA + G K+V Sbjct: 311 DNSNINK---ELNLLAGLAKIDKRVSFHTARHTNATLLLYSGANITTVQKLLGHKSVKTT 367 Query: 320 ETYTKGAD 327 + Y D Sbjct: 368 QVYANIMD 375 >gi|320195935|gb|EFW70559.1| Phage integrase [Escherichia coli WV_060327] Length = 303 Score = 37.7 bits (86), Expect = 2.5, Method: Compositional matrix adjust. Identities = 44/222 (19%), Positives = 87/222 (39%), Gaps = 20/222 (9%) Query: 93 ISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQ 150 + + S I RK D I+TK + + + + + +SA +++ +F+ A+ + Sbjct: 44 LDYASKIRAIRRKLPDKPLADISTKEVAAMLNTYVAEGKAASAKLIRSTLVDVFREAIAE 103 Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSC 210 +VA NP + K + R E + + RLA + + +G R D C Sbjct: 104 GHVATNPVTATRTAKSEVRRSRLTANEYVAIHHAAEPLPIWLRLAMDLAVVTGQRVGDLC 163 Query: 211 RAGVQHLQNNIFSIKTQKTGT-----------IITVELPDGFMKLLAMTPIGKETFFINN 259 + + +N I+ KTG + + L D K ++ G ET + Sbjct: 164 KMKWSDINDNHLHIEQGKTGAKLAIPLTLTIDALNISLADTLQKCREVS--GSETIIAST 221 Query: 260 DKQKMNATQFSIWFKAKATKAGVN-----KSAHGVRKFSATI 296 + ++ S +F +G++ + H +R SA + Sbjct: 222 HHEPLSPKTVSKYFTKARNASGLSFDGDPPTFHELRSLSARL 263 >gi|110806562|ref|YP_690082.1| putative integrase [Shigella flexneri 5 str. 8401] gi|110616110|gb|ABF04777.1| putative integrase [Shigella flexneri 5 str. 8401] Length = 319 Score = 37.7 bits (86), Expect = 2.5, Method: Compositional matrix adjust. Identities = 32/145 (22%), Positives = 60/145 (41%), Gaps = 2/145 (1%) Query: 93 ISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQ 150 I++ S I R D ITTK I + + + +SA +++ F+ A+ + Sbjct: 100 INYMSKIKAIRRGLPDAPLEDITTKEIAAMLNGYIDEGKAASAKLIRSTLSDAFREAIAE 159 Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSC 210 ++ NP + K + R E ++ +++ S RLA E + +G R D C Sbjct: 160 GHITTNPVAATRAAKSEVRRSRLTADEYLKIYQAAESSPCWLRLAMELAVVTGQRVGDLC 219 Query: 211 RAGVQHLQNNIFSIKTQKTGTIITV 235 + + ++ KTG I + Sbjct: 220 EMKWSDIVDGYLYVEQSKTGVKIAI 244 >gi|257870365|ref|ZP_05650018.1| integrase/recombinase [Enterococcus gallinarum EG2] gi|257804529|gb|EEV33351.1| integrase/recombinase [Enterococcus gallinarum EG2] Length = 320 Score = 37.7 bits (86), Expect = 2.6, Method: Compositional matrix adjust. Identities = 57/245 (23%), Positives = 100/245 (40%), Gaps = 22/245 (8%) Query: 97 SYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMR----VLFKWAVRQEY 152 + F + +RKS + +TT IR + +R+ + L R FKW +EY Sbjct: 72 NLFMRSVRKS----FSDVTTNDIRLFIANREMIDRVSKGTLARERGCIVRFFKWLCNEEY 127 Query: 153 VAINPCLSVER---PKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDS 209 +A +P VE PKR+ + +++ ++++ +S + S+ L E LL +G R S+ Sbjct: 128 IAKDPGARVENIKVPKRRKQ---EFSELEVEKLRS-ATANSKEALIIELLLSTGCRVSEL 183 Query: 210 CRAGVQHLQNNIFSI----KTQKTGTI-ITVELPDGFMKLLAMTP-IGKETFFINNDKQK 263 + SI K K T+ + + L P I FF ++ Sbjct: 184 VSLNFRDYDQENDSITVIGKGNKQRTLYLNAKAKMALNHYLKDVPHITGPLFFGQTVGKE 243 Query: 264 MNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 M + K +A V N H R+ +AT++ G +M G +++D Y Sbjct: 244 MTSAGVQKLVKRLGNRAEVANVHPHRFRRTAATLARRHGMPIELVMNFLGHESIDTTLKY 303 Query: 323 TKGAD 327 + D Sbjct: 304 SMIGD 308 >gi|41179288|ref|NP_958506.1| putative integrase [Lactobacillus prophage Lj928] gi|42519337|ref|NP_965267.1| Lj928 prophage integrase [Lactobacillus johnsonii NCC 533] gi|38731417|gb|AAR27347.1| putative integrase [Lactobacillus prophage Lj928] gi|41583625|gb|AAS09233.1| Lj928 prophage integrase [Lactobacillus prophage Lj928] Length = 391 Score = 37.7 bits (86), Expect = 2.6, Method: Compositional matrix adjust. Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 8/81 (9%) Query: 137 LTSMRVLFKWAVRQEYVAINPCLSV------ERPKRKTEGIRPWTKEDMQQFKSFWSE-G 189 + LF++ +R YV+ NP + RP+R TE +T++++ QF + G Sbjct: 138 INEFNALFEYGIRLNYVSENPLKRIIIPKKTSRPRRDTEH-NVYTQDELNQFLEVAKDYG 196 Query: 190 SQPRLAFEFLLYSGLRCSDSC 210 P F+ L +GLR S++ Sbjct: 197 LVPYTYFKLLSATGLRKSEAL 217 >gi|157265417|ref|YP_001467975.1| phage XerD-like integrase [Thermus phage P74-26] gi|156905312|gb|ABU96955.1| phage XerD-like integrase [Thermus phage P74-26] Length = 327 Score = 37.7 bits (86), Expect = 2.6, Method: Compositional matrix adjust. Identities = 45/201 (22%), Positives = 80/201 (39%), Gaps = 18/201 (8%) Query: 116 TKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK-------- 167 T+++ V + P++ + ++R W + EY+ NP +RPK + Sbjct: 87 TRNLVVEVLDKPVAPATLANYDRALRGFVNWLIGVEYLEHNPFKGRKRPKEEFYLKDVLT 146 Query: 168 TEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ 227 + I+ K M+ + + S LA L SGLR ++ CR V + + +++ Sbjct: 147 LDEIKALFKAAMRDPRYRYRNASILALA----LGSGLRAAEICRLQVADILWDEMAVRVH 202 Query: 228 -KTG---TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283 KTG +T E L + + + + + S W K +A AG+N Sbjct: 203 GKTGHGVVPVTRETLRYLRLYLDRERKATSPYLFVHRNRPLTSEVLSHWIKRQAKVAGIN 262 Query: 284 KSA--HGVRKFSATISADAGA 302 K H +R AT +G Sbjct: 263 KKVGMHLLRHTFATNYLKSGG 283 >gi|89091996|ref|ZP_01164951.1| tyrosine recombinase XerD [Oceanospirillum sp. MED92] gi|89083731|gb|EAR62948.1| tyrosine recombinase XerD [Oceanospirillum sp. MED92] Length = 306 Score = 37.7 bits (86), Expect = 2.6, Method: Compositional matrix adjust. Identities = 47/214 (21%), Positives = 86/214 (40%), Gaps = 19/214 (8%) Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 SS + L+ +R +++ +R+E ++ +P L ++ PK+ + T+ +++ + S Sbjct: 79 SSTSRMLSCLRGFYRYLLREEMISEDPLLLIDSPKKGRPLPKTLTESEVELLLDA-PDLS 137 Query: 191 QP-----RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-KTGTIITVELPD----- 239 P R E L +GLR S+ + + N ++ K G V L + Sbjct: 138 DPVQYRDRAMLEVLYATGLRVSELVALRLHEINLNQGVLRVMGKGGKERLVPLGEEAIHW 197 Query: 240 -----GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKF 292 G ++ T + F + Q+M F K A AG++K S H +R Sbjct: 198 VMRYMGEVRPALFTHDVSDVLFPSRRGQQMTRQTFWHRIKRHALTAGIDKTLSPHVLRHA 257 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGA 326 AT + GA + G + + YT A Sbjct: 258 FATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA 291 >gi|326800846|ref|YP_004318665.1| integrase family protein [Sphingobacterium sp. 21] gi|326551610|gb|ADZ79995.1| integrase family protein [Sphingobacterium sp. 21] Length = 392 Score = 37.7 bits (86), Expect = 2.7, Method: Compositional matrix adjust. Identities = 37/146 (25%), Positives = 57/146 (39%), Gaps = 13/146 (8%) Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT---GTIITVELPDGFMKLLAMTPIGK 252 F F +G+R SDS R + N + K +KT G T+ LP + L+ G+ Sbjct: 249 FLFSCLTGVRISDSHRLHRNMIVGNKLTFKMKKTERYGRTATIPLPKAALDLVE----GQ 304 Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMAT 310 E + K + + K A AG+ K+ H R TI + G L Sbjct: 305 EGYLFT----KFADKTINEYLKVIAVIAGIEKNLTYHCARDTFGTIFIELGGDIKSLCDI 360 Query: 311 YGWKTVDQAETYTKGADRIRLGIKNS 336 G E Y K +D+ + + N+ Sbjct: 361 MGHSDTRITEIYLKMSDQRKQNLMNN 386 >gi|294617989|ref|ZP_06697594.1| site-specific recombinase, phage integrase family [Enterococcus faecium E1679] gi|291595798|gb|EFF27086.1| site-specific recombinase, phage integrase family [Enterococcus faecium E1679] Length = 381 Score = 37.7 bits (86), Expect = 2.8, Method: Compositional matrix adjust. Identities = 34/131 (25%), Positives = 64/131 (48%), Gaps = 13/131 (9%) Query: 91 SRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVES-RKHTPSSAIQFLTSMRVLFKWAV 148 +++ E F++ I+ K G F ++IT KH++ + K T + T R+ FK+A+ Sbjct: 88 TQLKIEIKFNKWILPKYGKFRIKEITVKHVQKILNQWAKMTDQYKVLHSTVSRI-FKYAM 146 Query: 149 RQEYVAINPCLSVERPKRKTE----GIRPWTKEDMQ-QFKSFWSEGSQPRLAFE-----F 198 + NPC V P R E ++ +++ ++ F+ S+ S R ++ F Sbjct: 147 TLGLITKNPCELVIMPNRNVEKKKDTVKIYSRNQLEILFQYLESKRSTYRADYDKTLLRF 206 Query: 199 LLYSGLRCSDS 209 L +SG R S++ Sbjct: 207 LFFSGCRISEA 217 >gi|253690334|ref|YP_003019524.1| tyrosine recombinase XerC [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251756912|gb|ACT14988.1| tyrosine recombinase XerC [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 311 Score = 37.7 bits (86), Expect = 2.8, Method: Compositional matrix adjust. Identities = 45/206 (21%), Positives = 80/206 (38%), Gaps = 26/206 (12%) Query: 102 IIRKSGDFDYRKITTKHIRSGVESRK----HTPSSAIQFLTSMRVLFKWAVRQEYVAINP 157 I+ +G D+RK+ +RS V K H+ S A++ L+++R W V + + NP Sbjct: 51 ILSAAGVVDWRKLDAAGVRSVVSRSKRDGLHSGSLALR-LSALRSFLDWMVSRGVLTANP 109 Query: 158 CLSVERPKRKTEGIRPWTKE-DMQQF------KSFWSEGSQPRLAFEFLLYSGLRCSDSC 210 + P+ RP K D+ + + R E + +GLR ++ Sbjct: 110 AKGISTPRAG----RPLPKNMDVDEMDRLLDIDLDDPLAVRDRTMLEVMYGAGLRLAELV 165 Query: 211 RAGVQHLQNNIFSIKTQKTGTIITVELPDG------FMKLLAMTPI---GKETFFINNDK 261 QH+ + G+ +LP G + LA+ + + FI+N Sbjct: 166 GMDCQHIDLASGEVWVMGKGS-KERKLPIGKTAVTWLERWLALRELFGPQDDAVFISNQG 224 Query: 262 QKMNATQFSIWFKAKATKAGVNKSAH 287 ++++ F K GVN H Sbjct: 225 RRISMRNVQKRFAEWGIKQGVNSHVH 250 >gi|227431825|ref|ZP_03913850.1| bacteriophage integrase [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227352415|gb|EEJ42616.1| bacteriophage integrase [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 373 Score = 37.7 bits (86), Expect = 2.8, Method: Compositional matrix adjust. Identities = 44/204 (21%), Positives = 81/204 (39%), Gaps = 32/204 (15%) Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS--------EGSQP 192 R L AVR + + ++P +E PK + + +P ++ +FK+F Q Sbjct: 139 RRLLNIAVRMDMIPVDPFTKIEMPKERRQVNKPKQFMEVDEFKAFVDVLDNQYKYMNQQA 198 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTG------TII----------TV 235 +++G+R + QH+ N I Q G T I T+ Sbjct: 199 YTLLRLAVFTGMRTEEILALQWQHIDFNGGYISIVQALGRGLAGSTYIKEPKSQTSRRTL 258 Query: 236 ELPDGFMKLLA----MTPIGK-ETFFINNDKQKMNATQFSIWFKAKATKAG--VNKSAHG 288 ++ + M +LA T K + + N+ + + + W ++ + K G V S H Sbjct: 259 KIENKMMVVLADWFEATGYNKSDDYVFQNEGHTLQTIRPNKWLRSVSDKYGVAVGLSMHK 318 Query: 289 VRKFSATISADAGATAHELMATYG 312 +R AT++ D GA ++ G Sbjct: 319 LRHTWATLAIDQGANIKQVQTYLG 342 >gi|157265299|ref|YP_001467858.1| XerD-like integrase [Thermus phage P23-45] gi|156905194|gb|ABU96838.1| XerD-like integrase [Thermus phage P23-45] Length = 327 Score = 37.7 bits (86), Expect = 2.8, Method: Compositional matrix adjust. Identities = 45/201 (22%), Positives = 80/201 (39%), Gaps = 18/201 (8%) Query: 116 TKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK-------- 167 T+++ V + P++ + ++R W + EY+ NP +RPK + Sbjct: 87 TRNLVVEVLDKPVAPATLANYDRALRGFVNWLIGVEYLEHNPFKGRKRPKEEFYLKDVLT 146 Query: 168 TEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ 227 + I+ K M+ + + S LA L SGLR ++ CR V + + +++ Sbjct: 147 LDEIKALFKAAMRDPRYRYRNASILALA----LGSGLRAAEICRLQVADILWDEMAVRVH 202 Query: 228 -KTG---TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283 KTG +T E L + + + + + S W K +A AG+N Sbjct: 203 GKTGHGVVPVTRETLRYLRLYLDRERKATSPYLFVHRNRPLTSEVLSHWIKRQAKVAGIN 262 Query: 284 KSA--HGVRKFSATISADAGA 302 K H +R AT +G Sbjct: 263 KKVGMHLLRHTFATNYLKSGG 283 >gi|121535764|ref|ZP_01667566.1| tyrosine recombinase XerD [Thermosinus carboxydivorans Nor1] gi|121305663|gb|EAX46603.1| tyrosine recombinase XerD [Thermosinus carboxydivorans Nor1] Length = 295 Score = 37.7 bits (86), Expect = 2.8, Method: Compositional matrix adjust. Identities = 43/233 (18%), Positives = 94/233 (40%), Gaps = 21/233 (9%) Query: 110 DYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169 D + T + + ++S+ S+ + L +++ +++ VR+ Y+ +P ++E PK + + Sbjct: 47 DSNRNTILNYLNNLQSKGRAVSTISRNLAAIKSFYQYLVRERYIDKDPAANLESPKLEKK 106 Query: 170 GIRPWT----KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK 225 + + +E ++Q S G + + E L +G+R S+ + + ++ IK Sbjct: 107 LPKILSIAEVEELLKQPNSLLPTGLRDKAMLELLYATGIRVSELISLNITDVNLDMGYIK 166 Query: 226 TQKTGT-------------IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIW 272 G + + G KL + + F+N+ ++ F Sbjct: 167 CYGKGAKERIVPLGSIAAKCVQEYIAKGRPKL--VRTYDEPALFVNHHGNRLTRQGFWKI 224 Query: 273 FKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 K A +A + K + H +R AT + GA + G + + YT Sbjct: 225 IKKYAQEANITKEITPHTLRHSFATHLLENGADLRSVQEMLGHADISTTQIYT 277 >gi|319778943|ref|YP_004129856.1| Tyrosine recombinase XerC [Taylorella equigenitalis MCE9] gi|317108967|gb|ADU91713.1| Tyrosine recombinase XerC [Taylorella equigenitalis MCE9] Length = 315 Score = 37.7 bits (86), Expect = 2.8, Method: Compositional matrix adjust. Identities = 28/117 (23%), Positives = 50/117 (42%), Gaps = 10/117 (8%) Query: 110 DYRKITTKHIRSGV---ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166 D K+ +R + SR P S + L+S R +KW + + INP L ++ PK Sbjct: 41 DLSKLNNMDVRQAIATLHSRDFNPRSLTRILSSWRNFYKWYSLKYELDINPTLGIKAPKV 100 Query: 167 KTEGIRPWTKEDMQ-------QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH 216 + T ++ + Q + ++ + FE L SGLR S+ +++ Sbjct: 101 ARPLPKALTADEAKLLLDVGLQTDDNSAVHARDQAMFELLYSSGLRLSELVNLDIEY 157 >gi|239993652|ref|ZP_04714176.1| tyrosine recombinase [Alteromonas macleodii ATCC 27126] Length = 306 Score = 37.7 bits (86), Expect = 2.9, Method: Compositional matrix adjust. Identities = 51/241 (21%), Positives = 98/241 (40%), Gaps = 47/241 (19%) Query: 87 LAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK---HTPSSAIQFLTSMRVL 143 L++++ +++ ++ + G +++ +T I+ + K H+P S L+++R Sbjct: 28 LSLHTIKNYQRQLTEVAKLLGLYEWSGLTPSDIKRVMADAKMSGHSPRSIALRLSALRTF 87 Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF------KSFWSEGSQPR--LA 195 ++ + + + NP ++ PK+ + + ++MQQ S EG Q R Sbjct: 88 CQYLIDHQQLFSNPVEGIQAPKQGKPLPKQLSVDEMQQLLNASPRSSDDDEGMQLRDVAM 147 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA------MTP 249 FE L GLR S+ TG + L DG +K++ + P Sbjct: 148 FELLYGCGLRLSE-------------------LTGLNLADCLKDGTVKVMGKGSKQRILP 188 Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMA 309 +G+ ++ +NA W K + A +SA V K IS A + MA Sbjct: 189 LGRHA------QKALNA-----WLKVRPAYASPYESAVFVSKRKTRISNRQVANRLDKMA 237 Query: 310 T 310 + Sbjct: 238 S 238 >gi|264677254|ref|YP_003277160.1| tyrosine recombinase XerD [Comamonas testosteroni CNB-2] gi|262207766|gb|ACY31864.1| tyrosine recombinase XerD [Comamonas testosteroni CNB-2] Length = 318 Score = 37.7 bits (86), Expect = 2.9, Method: Compositional matrix adjust. Identities = 55/221 (24%), Positives = 86/221 (38%), Gaps = 19/221 (8%) Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINP---CLSVERPKRKTEGIRPWTKEDM 179 VE K T S+ + LT +R F WA+R++ +A +P L+ ++P R + + E + Sbjct: 85 VEGTKATSSN--RRLTVLRRYFHWALREKRIAADPTVRMLAAKQPPRMPKTLTQEQVEAL 142 Query: 180 QQFKSFWSE-GSQPRLAFEFLLYSGLRCSD---------SCRAGVQHLQNNIFSIKTQKT 229 S G + R E + SGLR S+ R+GV + + Sbjct: 143 LDAPDVDSPLGLRDRAMLELMYASGLRVSELVGVCMHELDLRSGVLRVTGKGRKERLVPF 202 Query: 230 GTIITVELPDGFMKLLAMTPIGKET--FFINNDKQKMNATQFSIWFKAKATKAGVNK--S 285 G L + A+ G++T F+ M+ F + K A AGVN S Sbjct: 203 GQEAQHWLERYLQQARAVILGGQQTEEVFVTQRGAGMSRVMFWVIVKKCAQIAGVNSPLS 262 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 H +R AT + GA + G + YT A Sbjct: 263 PHTLRHAFATHLLNHGADLRVVQMLLGHADISTTTIYTHVA 303 >gi|22536401|ref|NP_687252.1| phage integrase family site specific recombinase [Streptococcus agalactiae 2603V/R] gi|22533228|gb|AAM99124.1|AE014201_22 site-specific recombinase, phage integrase family [Streptococcus agalactiae 2603V/R] Length = 384 Score = 37.7 bits (86), Expect = 2.9, Method: Compositional matrix adjust. Identities = 28/108 (25%), Positives = 49/108 (45%), Gaps = 3/108 (2%) Query: 101 QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160 I+ GD KI+ ++ + + T + Q + +F +A++ + + NP Sbjct: 100 HILPVMGDLPISKISPLDCQNFITDKAKTFKNIKQIKSYTGKVFDFAIKMKLLKHNPMAE 159 Query: 161 VERPKRKTEGIRP-WTKEDMQQFKS--FWSEGSQPRLAFEFLLYSGLR 205 + PKRK I WT +++Q+F + E + F L YSGLR Sbjct: 160 IIMPKRKKTRIENYWTVQELQEFLAIVLQEEPYKHYALFRLLAYSGLR 207 >gi|150008883|ref|YP_001303626.1| tyrosine type site-specific recombinase [Parabacteroides distasonis ATCC 8503] gi|301311928|ref|ZP_07217850.1| integrase/recombinase XerC [Bacteroides sp. 20_3] gi|149937307|gb|ABR44004.1| tyrosine type site-specific recombinase [Parabacteroides distasonis ATCC 8503] gi|300830030|gb|EFK60678.1| integrase/recombinase XerC [Bacteroides sp. 20_3] Length = 302 Score = 37.4 bits (85), Expect = 3.0, Method: Compositional matrix adjust. Identities = 59/253 (23%), Positives = 106/253 (41%), Gaps = 35/253 (13%) Query: 99 FDQIIR--KSGDFDYRKITTKHIRSGVES---RKHTPSSAIQFLTSMRVLFKWAVRQEYV 153 F + +R + G F+ +I + +RS + S K +P S + L+S++ FK+ +++ V Sbjct: 31 FQRYVREHREGVFNPGEIDSDFVRSWIVSLMDEKLSPVSVNRKLSSLKSFFKFLMKRGIV 90 Query: 154 AINPCLSVERPKRKTE---GIRPWTKEDMQQFKSFWS--EGSQPRLAFEFLLYSGLRCSD 208 + NP V PK K I+ E + F EG + RL E L +G+R S+ Sbjct: 91 SANPLRLVSGPKTKKPLPYFIKDSELEALLDGDGFDEDFEGVRNRLVIEMLYDTGMRRSE 150 Query: 209 SCRAGVQHLQNNIFSIKTQKTG---TIITVELPDGFMKL-LAMTPI-------GKETFFI 257 G++++ + +++ + TG + +G L LA T + E FF+ Sbjct: 151 LI--GIRNVDVDYEAMQVKVTGKRNKQRLIPFAEGLKNLMLAYTEVRDREVEAAGEWFFV 208 Query: 258 NNDKQKMNATQFSIWFKAKATKAGVN-------KSAHGVRKFSATISADAGATAHELMAT 310 + N Q S K ++ +S H +R AT + GA + + Sbjct: 209 -----RKNGNQLSTGIVYNIVKKQLSEIPMLAKRSPHVLRHSFATSMLNNGAELNAVKDL 263 Query: 311 YGWKTVDQAETYT 323 G ++ YT Sbjct: 264 LGHSSLASTSVYT 276 >gi|90421232|ref|ZP_01229131.1| integrase/recombinase [Aurantimonas manganoxydans SI85-9A1] gi|90334507|gb|EAS48293.1| integrase/recombinase [Aurantimonas manganoxydans SI85-9A1] Length = 318 Score = 37.4 bits (85), Expect = 3.0, Method: Compositional matrix adjust. Identities = 30/127 (23%), Positives = 60/127 (47%), Gaps = 10/127 (7%) Query: 114 ITTKHIRSGVE--SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP-----KR 166 + + H+ + +E +RK + +A Q L+++R+LF W V + V +NP SV P + Sbjct: 66 VRSLHVAAFIEELTRKRSAPTAKQQLSAIRMLFDWLVVGQVVPVNPAASVRGPSHSVRRG 125 Query: 167 KTEGIRPW-TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQ--HLQNNIFS 223 KT + P ++ + G + R ++YS +R + V+ ++QN Sbjct: 126 KTPVLDPTEARQLLDAIDVTTPAGLRDRALIGLMIYSFVRVGAALGMKVEDVYVQNRRLW 185 Query: 224 IKTQKTG 230 ++ + G Sbjct: 186 VRLNEKG 192 >gi|289191135|dbj|BAI77470.1| PsvA protein [Pseudomonas syringae pv. dendropanacis] Length = 731 Score = 37.4 bits (85), Expect = 3.1, Method: Compositional matrix adjust. Identities = 57/240 (23%), Positives = 93/240 (38%), Gaps = 20/240 (8%) Query: 75 ISEYRKSAHWGSLAVNSRI---SFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131 IS+Y + H A+N+R+ S ES Q ++ D I H+R +ES KH S Sbjct: 145 ISDYLQRQHMP--AINARLFSDSLESDLKQYAFQNNRSDTLAII-GHLRR-IESNKHGVS 200 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191 + + F T L +W + Q + N S R + + W + Sbjct: 201 AILPFKTKSSDLDEWLIDQVFSDENQTTSSYRSTLR--ALSHWLAAQEKPGLCDPDYLHS 258 Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA-MTPI 250 L + L +S L C A +QH++N K + T +PD L++ I Sbjct: 259 HDLTGDVLKFSCLPGRHQCSAALQHMRNYDLGSKVRLKKQRDTRNIPDEDQTLISHYQKI 318 Query: 251 GKETFFINNDK--QKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELM 308 + I N K +K N + + V+K A +R FSA + + + L+ Sbjct: 319 ANDALVIKNSKAGKKTN--------RDPHGRTSVDKYASVLRSFSAWLKEEGKGSLSTLL 370 >gi|160894098|ref|ZP_02074876.1| hypothetical protein CLOL250_01652 [Clostridium sp. L2-50] gi|156864131|gb|EDO57562.1| hypothetical protein CLOL250_01652 [Clostridium sp. L2-50] Length = 405 Score = 37.4 bits (85), Expect = 3.1, Method: Compositional matrix adjust. Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 1/74 (1%) Query: 138 TSMRVLFKWAVRQEYVAINPCLSVER-PKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF 196 M LF A +A NPC V+R K + ++ WT E+ +QF + GS+ + F Sbjct: 128 NQMTALFNHAKNIYNLADNPCDKVKRMGKTSKKKMKFWTIEEYRQFMTGIEPGSKYYVLF 187 Query: 197 EFLLYSGLRCSDSC 210 E L ++G R ++ Sbjct: 188 ELLFWTGAREGEAL 201 >gi|261207379|ref|ZP_05922066.1| predicted protein [Enterococcus faecium TC 6] gi|289566793|ref|ZP_06447205.1| predicted protein [Enterococcus faecium D344SRF] gi|260078439|gb|EEW66143.1| predicted protein [Enterococcus faecium TC 6] gi|289161420|gb|EFD09308.1| predicted protein [Enterococcus faecium D344SRF] Length = 382 Score = 37.4 bits (85), Expect = 3.1, Method: Compositional matrix adjust. Identities = 39/147 (26%), Positives = 65/147 (44%), Gaps = 16/147 (10%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE--SRKHTP 130 WL S Y+K+ S + ++I F + I G+ KI T + + V S K T Sbjct: 76 WLES-YKKTVKESSYS-RTKIIFNKH---IYPNFGNIKLSKINTAYCQKVVNDWSEKGTS 130 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE---GIRPWTKEDMQQFKSFWS 187 F+ M +FK+A+ + NP L++ PK + E ++ +TKE ++ F + S Sbjct: 131 KQYPLFINYMNKVFKYAINIGLTSDNPTLNLIIPKPQIETEKKLKLYTKEQLELFLNEVS 190 Query: 188 EGSQPRLA------FEFLLYSGLRCSD 208 + P F L +SG R + Sbjct: 191 QEQNPYFKNRDYTLFRLLAFSGCRIGE 217 >gi|34762220|ref|ZP_00143227.1| DNA integration/recombination/invertion protein [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27888181|gb|EAA25240.1| DNA integration/recombination/invertion protein [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 405 Score = 37.4 bits (85), Expect = 3.1, Method: Compositional matrix adjust. Identities = 25/101 (24%), Positives = 50/101 (49%), Gaps = 1/101 (0%) Query: 81 SAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSM 140 A + S N++IS YF + +K D + I K+ + R + ++ I + + Sbjct: 104 DATYSSYLSNTKISILPYFFKENKKLKDINTFDIQ-KYYFHELNVRGVSANTVIHYHNLL 162 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 + FK+A + + INP L+VE+PK+ + + E +++ Sbjct: 163 SLTFKYAQKIGIITINPMLNVEKPKKVRYIAKVYNHEQIKE 203 >gi|310826662|ref|YP_003959019.1| integrase [Eubacterium limosum KIST612] gi|308738396|gb|ADO36056.1| integrase [Eubacterium limosum KIST612] Length = 412 Score = 37.4 bits (85), Expect = 3.1, Method: Compositional matrix adjust. Identities = 35/168 (20%), Positives = 80/168 (47%), Gaps = 10/168 (5%) Query: 50 ALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESY-FDQIIRKSGD 108 +T ++E INS +WL +++ +++ + +S + S ++ +I GD Sbjct: 77 VITEKFQEKEIINSEEYSAFLREWL-TDWLENSKKTEIKKSSYTQYSSVVYNHLIPTIGD 135 Query: 109 FDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVL------FKWAVRQEYVAINPCLSVE 162 + +++T+ I++ V+++ A+ T R + K AV+ + +NPC+ V Sbjct: 136 YRLQEVTSDVIQNYVKAKLSHHQKALSSTTVRRHISILSSALKQAVKLGIITVNPCIDVC 195 Query: 163 RPKRKTEGIRPWTKEDMQQF-KSFWSEGSQPRLAFEFL-LYSGLRCSD 208 P K + ++KE+ Q+ K+ + + + + L L +G+R + Sbjct: 196 IPAAKKRKMDVFSKEEYQKLEKTLYCDQDKVKATAVLLALKTGVRLGE 243 >gi|332139609|ref|YP_004425347.1| tyrosine recombinase [Alteromonas macleodii str. 'Deep ecotype'] gi|327549631|gb|AEA96349.1| tyrosine recombinase [Alteromonas macleodii str. 'Deep ecotype'] Length = 306 Score = 37.4 bits (85), Expect = 3.1, Method: Compositional matrix adjust. Identities = 48/228 (21%), Positives = 93/228 (40%), Gaps = 47/228 (20%) Query: 87 LAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK---HTPSSAIQFLTSMRVL 143 L++++ +++ ++ + G +++ +T I+ + K H+P S L+++R Sbjct: 28 LSLHTIKNYKRQLTEVAKLLGLYEWSGLTPSDIKRVMADAKMSGHSPRSIALRLSALRTF 87 Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF------KSFWSEGSQPR--LA 195 ++ + + + NP ++ PK+ + + ++MQQ S EG Q R Sbjct: 88 CQYLIEHQQLFSNPVEGIQAPKQGKPLPKQLSVDEMQQLLNASPQSSDEDEGMQLRDVAM 147 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA------MTP 249 FE L GLR S+ TG + L DG +K++ + P Sbjct: 148 FELLYGCGLRLSEL-------------------TGLNLADCLKDGTVKVMGKGSKQRILP 188 Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATIS 297 +G+ ++ +NA W K + A +SA V K IS Sbjct: 189 LGRHA------QKALNA-----WLKVRPAYASPYESAVFVSKRKTRIS 225 >gi|221065123|ref|ZP_03541228.1| integrase family protein [Comamonas testosteroni KF-1] gi|220710146|gb|EED65514.1| integrase family protein [Comamonas testosteroni KF-1] Length = 348 Score = 37.4 bits (85), Expect = 3.2, Method: Compositional matrix adjust. Identities = 31/117 (26%), Positives = 49/117 (41%), Gaps = 9/117 (7%) Query: 101 QIIRKSGDFDYRKITTKHIR---SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINP 157 Q + ++ D + + HIR + + S + L+ R F+WA ++E V NP Sbjct: 49 QSLAQAADQELLTLQPAHIRRFAAQMHSAGRSARGIALILSGWRSFFRWAAQRELVPFNP 108 Query: 158 CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP-----RLAFEFLLYS-GLRCSD 208 V PK + +D Q SF + P +A LLYS GLR ++ Sbjct: 109 VEGVRGPKAAKPLPKALAVDDAVQLASFQIPDADPWIEARDVAMTELLYSCGLRVAE 165 >gi|325662745|ref|ZP_08151339.1| hypothetical protein HMPREF0490_02079 [Lachnospiraceae bacterium 4_1_37FAA] gi|325470982|gb|EGC74210.1| hypothetical protein HMPREF0490_02079 [Lachnospiraceae bacterium 4_1_37FAA] Length = 361 Score = 37.4 bits (85), Expect = 3.2, Method: Compositional matrix adjust. Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 5/86 (5%) Query: 143 LFKWAVRQEYVAINPCLSV-ERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY 201 +F +AV+ + NPC K E ++ WTK + +QF + + AF + Y Sbjct: 127 MFNYAVKYYDLRENPCTKAGSMGKSNAEEMQFWTKAEFEQFITAVQDKPASYTAFMTMYY 186 Query: 202 SGLRCSDSCR---AGVQHLQNNIFSI 224 +G+R + C A V L+NN +I Sbjct: 187 TGMRVGELCALTPADVD-LKNNTIAI 211 >gi|255014711|ref|ZP_05286837.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_7] Length = 302 Score = 37.4 bits (85), Expect = 3.3, Method: Compositional matrix adjust. Identities = 59/253 (23%), Positives = 106/253 (41%), Gaps = 35/253 (13%) Query: 99 FDQIIR--KSGDFDYRKITTKHIRSGVES---RKHTPSSAIQFLTSMRVLFKWAVRQEYV 153 F + +R + G F+ +I + +RS + S K +P S + L+S++ FK+ +++ V Sbjct: 31 FQRYVREHREGVFNPGEIDSDFVRSWIVSLMDEKLSPVSVNRKLSSLKSFFKFLMKRGIV 90 Query: 154 AINPCLSVERPKRKTE---GIRPWTKEDMQQFKSFWS--EGSQPRLAFEFLLYSGLRCSD 208 + NP V PK K I+ E + F EG + RL E L +G+R S+ Sbjct: 91 SANPLRLVSGPKTKKPLPYFIKDSELEALLDGDGFDEDFEGVRNRLVIEMLYDTGMRRSE 150 Query: 209 SCRAGVQHLQNNIFSIKTQKTG---TIITVELPDGFMKL-LAMTPI-------GKETFFI 257 G++++ + +++ + TG + +G L LA T + E FF+ Sbjct: 151 LI--GIRNVDVDYEAMQVKVTGKRNKQRLIPFAEGLKNLMLAYTEVRDREVEAAGEWFFV 208 Query: 258 NNDKQKMNATQFSIWFKAKATKAGVN-------KSAHGVRKFSATISADAGATAHELMAT 310 + N Q S K ++ +S H +R AT + GA + + Sbjct: 209 -----RKNGNQLSTGIVYNIVKKQLSEIPMLAKRSPHVLRHSFATSMLNNGAELNTVKDL 263 Query: 311 YGWKTVDQAETYT 323 G ++ YT Sbjct: 264 LGHSSLASTSVYT 276 >gi|225026538|ref|ZP_03715730.1| hypothetical protein EUBHAL_00787 [Eubacterium hallii DSM 3353] gi|224956152|gb|EEG37361.1| hypothetical protein EUBHAL_00787 [Eubacterium hallii DSM 3353] Length = 354 Score = 37.4 bits (85), Expect = 3.3, Method: Compositional matrix adjust. Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 3/90 (3%) Query: 138 TSMRVLFKWAVRQEYVAINPCLSVER-PKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF 196 + LF A R + NPC V+R K + + W KE+ +F S S+ L F Sbjct: 128 NQINALFNHAQRIYNLKENPCKKVKRMGKSDADKLDFWIKEEYDRFISGVDRKSEDYLMF 187 Query: 197 EFLLYSGLRCSDSCRAGVQ--HLQNNIFSI 224 E L ++G+R + + + NN+ I Sbjct: 188 EILFWTGIREGELLSLTIADFDMTNNLLHI 217 >gi|237744359|ref|ZP_04574840.1| phage integrase [Fusobacterium sp. 7_1] gi|229431588|gb|EEO41800.1| phage integrase [Fusobacterium sp. 7_1] Length = 353 Score = 37.4 bits (85), Expect = 3.3, Method: Compositional matrix adjust. Identities = 28/108 (25%), Positives = 51/108 (47%), Gaps = 4/108 (3%) Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 +K+ SS +++LF W VR + +A NP V+R K +T+ D +F Sbjct: 117 KKYKGSSIRTINAYVKMLFTWCVRYKNLASNPFDMVDRLKLETKKRMDIITVD--EFNQI 174 Query: 186 WSEGSQP--RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231 + + P +L F+ L ++GLR ++ + + N +I K+ T Sbjct: 175 IKQVNNPDMKLMFKLLFWTGLRIGEARALKIDDIDFNNKTISVTKSYT 222 >gi|147668730|ref|YP_001213548.1| phage integrase family protein [Dehalococcoides sp. BAV1] gi|146269678|gb|ABQ16670.1| phage integrase family protein [Dehalococcoides sp. BAV1] Length = 319 Score = 37.4 bits (85), Expect = 3.3, Method: Compositional matrix adjust. Identities = 16/85 (18%), Positives = 47/85 (55%), Gaps = 3/85 (3%) Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 ++ P+S + + +++ F W + + ++ +P +++ P+ + + IRP+T++ ++ + Sbjct: 89 RNNPTSVLDYYKAVKRFFNWLIEEGVLSKSPLATIKPPRTEQKIIRPFTRQQIEDLLATC 148 Query: 187 SE---GSQPRLAFEFLLYSGLRCSD 208 + G + + +L +GLR S+ Sbjct: 149 GDSPIGLRNKAMILTMLDTGLRVSE 173 >gi|89890506|ref|ZP_01202016.1| tyrosine recombinase XerD [Flavobacteria bacterium BBFL7] gi|89517421|gb|EAS20078.1| tyrosine recombinase XerD [Flavobacteria bacterium BBFL7] Length = 298 Score = 37.4 bits (85), Expect = 3.3, Method: Compositional matrix adjust. Identities = 51/213 (23%), Positives = 77/213 (36%), Gaps = 19/213 (8%) Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPK--RKTEGIRPWTKED--MQQFKSFWSEGSQP 192 L+S++V F + + ++Y NP +E PK RK + D + G + Sbjct: 76 LSSLKVFFNYLILEDYRKDNPLELIESPKIGRKLPDTLSTQEIDALINSIDRSTPHGERN 135 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-----------TIITVELPDGF 241 R E L GLR S+ + L IK G TI + L Sbjct: 136 RAILETLYGCGLRVSELTTLKISDLFFQEGFIKVTGKGDKQRFIPIGDFTIKVINLYINE 195 Query: 242 MK-LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISA 298 ++ L + P +T F+N + K KAG+ K S H R AT Sbjct: 196 IRPHLPIKPQHTDTVFLNRRGAGLTRAMIFHIIKELKVKAGITKKISPHTFRHSFATHLL 255 Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 + GA + G +++ E Y DR L Sbjct: 256 ENGADLRSIQMMLGHESITTTEIYMH-VDRAHL 287 >gi|126175915|ref|YP_001052064.1| phage integrase family protein [Shewanella baltica OS155] gi|125999120|gb|ABN63195.1| phage integrase family protein [Shewanella baltica OS155] Length = 376 Score = 37.4 bits (85), Expect = 3.3, Method: Compositional matrix adjust. Identities = 46/188 (24%), Positives = 76/188 (40%), Gaps = 18/188 (9%) Query: 79 RKSAHWG-SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFL 137 R + HW S +NS+ F + ++ GD +T +HI + + A + L Sbjct: 104 RYARHWKPSTLLNSQRGFTRHIAPVL---GDVPLAALTRQHIEQWFDGMHASKGMANRLL 160 Query: 138 TSMRVLFKWAVRQEY--VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-----SEGS 190 + V+ + A EY NPC +R K T R ++E++ K W E + Sbjct: 161 PLLSVMMQQAEVYEYRPAQSNPCKGFKRYK-STHSERYLSEEEL---KRLWLALDSHEKA 216 Query: 191 QPR--LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT 248 P + L+ +G RC++ C + + + KTG TV L +LL+ Sbjct: 217 SPVAVMVLRLLILTGCRCNEVCSVKWADYRQGHWYLPDSKTGA-KTVFLSSFARELLSDW 275 Query: 249 PIGKETFF 256 P E F Sbjct: 276 PQVSEHLF 283 >gi|288926604|ref|ZP_06420520.1| integrase/recombinase XerD [Prevotella buccae D17] gi|288336626|gb|EFC74996.1| integrase/recombinase XerD [Prevotella buccae D17] Length = 304 Score = 37.4 bits (85), Expect = 3.4, Method: Compositional matrix adjust. Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 2/82 (2%) Query: 244 LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAG 301 L+ + P ++ F+N + T I K +A AG+ K S H +R AT G Sbjct: 202 LMTIKPGEEDYVFLNRRGHHLTRTMILIMIKRQAVAAGIKKTISPHTLRHSFATALLKGG 261 Query: 302 ATAHELMATYGWKTVDQAETYT 323 A + A G +++ E YT Sbjct: 262 ADLRAIQAMLGHESIGTTEVYT 283 >gi|222081454|ref|YP_002540817.1| site-specific integrase protein [Agrobacterium radiobacter K84] gi|221726133|gb|ACM29222.1| site-specific integrase protein [Agrobacterium radiobacter K84] Length = 393 Score = 37.4 bits (85), Expect = 3.4, Method: Compositional matrix adjust. Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 8/89 (8%) Query: 258 NNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKFSATISADAGATAHELMATYGWK 314 N D+Q + + KA+ +AG++ SAHG+R T +A+ G E M + Sbjct: 310 NIDRQALTPQSVNFILKARVKQAGLDPEAFSAHGLRSGYLTEAANRGVPLPEAMQQSLHR 369 Query: 315 TVDQAETYTKGADRIRLGIKNSRRISSVV 343 +V QA +Y A+R KN R V+ Sbjct: 370 SVTQAASYYNNAER-----KNGRAARLVI 393 >gi|307565005|ref|ZP_07627522.1| putative tyrosine recombinase XerD [Prevotella amnii CRIS 21A-A] gi|307346318|gb|EFN91638.1| putative tyrosine recombinase XerD [Prevotella amnii CRIS 21A-A] Length = 310 Score = 37.4 bits (85), Expect = 3.5, Method: Compositional matrix adjust. Identities = 44/206 (21%), Positives = 83/206 (40%), Gaps = 17/206 (8%) Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGS 190 + L+ +R +++ + Y+ I+P +E PK+ + ++ + EG Sbjct: 78 RVLSGIRHFYRFLILDGYLEIDPTELLESPKQPKHLPEVLSTAEVDIILNSIDLTKWEGQ 137 Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT---IITV------ELPDGF 241 + + E L GLR S+ + +L ++ G+ ++ + EL F Sbjct: 138 RNKAIIEVLFSCGLRVSELTSLKISNLYFQEQYVRIMGKGSKERLVPISPRAIEELNYWF 197 Query: 242 MKLLAM-TPIGKETF-FINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS 297 + M G++ + F+N + T I K A AG+ K S H +R AT Sbjct: 198 LDRSQMKIKEGEDDYVFLNRRGSHLTRTMILIMLKRYAYAAGIKKTISPHTLRHSFATAL 257 Query: 298 ADAGATAHELMATYGWKTVDQAETYT 323 + GA + A G +++ E YT Sbjct: 258 LEGGADLRSIQAMLGHESIVTTELYT 283 >gi|307320026|ref|ZP_07599448.1| integrase family protein [Sinorhizobium meliloti AK83] gi|306894403|gb|EFN25167.1| integrase family protein [Sinorhizobium meliloti AK83] Length = 391 Score = 37.4 bits (85), Expect = 3.5, Method: Compositional matrix adjust. Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 8/89 (8%) Query: 258 NNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKFSATISADAGATAHELMATYGWK 314 N D++ + ++ KA+ +AG++ SAHG+R T +A+ G E M K Sbjct: 308 NVDRRALTPQSINLILKARCEQAGLDPALFSAHGLRSGYLTEAANRGIPLPEAMQQSLHK 367 Query: 315 TVDQAETYTKGADRIRLGIKNSRRISSVV 343 +V QA +Y A+R KN R +V Sbjct: 368 SVTQAASYYNNAER-----KNGRAARLIV 391 >gi|257883925|ref|ZP_05663578.1| phage integrase [Enterococcus faecium 1,231,501] gi|257819763|gb|EEV46911.1| phage integrase [Enterococcus faecium 1,231,501] Length = 381 Score = 37.4 bits (85), Expect = 3.5, Method: Compositional matrix adjust. Identities = 31/121 (25%), Positives = 53/121 (43%), Gaps = 14/121 (11%) Query: 102 IIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV 161 I+ K G+ ++T K + V S T ++ + +F +A+ + NP +V Sbjct: 99 ILPKYGNLRMNEVTVKKAQQIVNSWAETTDQYKVLHSTSKRIFSYAINLGIIETNPLENV 158 Query: 162 ERPKRKT----EGIRPWTKEDMQQFKSFWSEGSQP--------RLAFEFLLYSGLRCSDS 209 PKR T E ++ ++KE Q F S+P + FL YSG+R S++ Sbjct: 159 LMPKRTTTKHKEKVKVYSKE--QLITLFDYLNSKPETYRNDFDKTLLRFLFYSGVRISEA 216 Query: 210 C 210 Sbjct: 217 L 217 >gi|229015245|ref|ZP_04172280.1| hypothetical protein bmyco0001_55910 [Bacillus mycoides DSM 2048] gi|228746047|gb|EEL96015.1| hypothetical protein bmyco0001_55910 [Bacillus mycoides DSM 2048] Length = 280 Score = 37.4 bits (85), Expect = 3.5, Method: Compositional matrix adjust. Identities = 44/243 (18%), Positives = 97/243 (39%), Gaps = 12/243 (4%) Query: 99 FDQIIRKSGDFDYRKITTKHIRSG-VESRKHT-PSSAIQFLTSMRVLFKWAVRQEYVAIN 156 ++ ++R GD + + TT+ ++ +E+ +H PSS + ++ LF+W + ++ N Sbjct: 31 YNLLLRYFGDINMSEFTTEKLKGYLIEAGEHLKPSSLGHRVRCIKSLFRWTHDEGFILKN 90 Query: 157 PCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH 216 P ++ PK + + ++ +++ + S FEFL +G R + + Sbjct: 91 PAAKLKEPKLGKKIPKFLSELEIEHLRE-ACHNSMENALFEFLYSTGCRIGEVVKLNRVD 149 Query: 217 LQNNIFSIKTQKTG-----TIITVELPDGFMKLLAMTPIGKETFFINND--KQKMNATQF 269 + + S+ G + L + FI K++M+ Sbjct: 150 INFSTNSVIVHGKGDKEREVYFNTRCTIWLKRYLDERDDEEPCLFITERRPKRRMSIDNL 209 Query: 270 SIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 K + +A + KS H +R AT + GA + + G + + Y + + Sbjct: 210 RFIIKRISNRARIKKSIHPHQLRHSYATHMINNGAPLEVIQSLLGHEKSETTRIYAQLSG 269 Query: 328 RIR 330 ++R Sbjct: 270 KLR 272 >gi|217975611|ref|YP_002360281.1| integrase family protein [Shewanella baltica OS223] gi|217500806|gb|ACK48858.1| integrase family protein [Shewanella baltica OS223] Length = 376 Score = 37.4 bits (85), Expect = 3.5, Method: Compositional matrix adjust. Identities = 46/188 (24%), Positives = 76/188 (40%), Gaps = 18/188 (9%) Query: 79 RKSAHWG-SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFL 137 R + HW S +NS+ F + ++ GD +T +HI + + A + L Sbjct: 104 RYARHWKPSTLLNSQRGFTRHIAPVL---GDVPLAALTRQHIEQWFDGMHASKGMANRLL 160 Query: 138 TSMRVLFKWAVRQEY--VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-----SEGS 190 + V+ + A EY NPC +R K T R ++E++ K W E + Sbjct: 161 PLLSVMMQQAEVYEYRPAQSNPCKGFKRYK-STHSERYLSEEEL---KRLWLALDSHEKA 216 Query: 191 QPR--LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT 248 P + L+ +G RC++ C + + + KTG TV L +LL+ Sbjct: 217 SPVAVMVLRLLILTGCRCNEVCSVKWADYRQGHWYLPDSKTGA-KTVFLSSFARELLSDW 275 Query: 249 PIGKETFF 256 P E F Sbjct: 276 PQVSEHLF 283 >gi|239905355|ref|YP_002952094.1| site-specific recombinase [Desulfovibrio magneticus RS-1] gi|239795219|dbj|BAH74208.1| site-specific recombinase [Desulfovibrio magneticus RS-1] Length = 411 Score = 37.4 bits (85), Expect = 3.6, Method: Compositional matrix adjust. Identities = 53/243 (21%), Positives = 99/243 (40%), Gaps = 23/243 (9%) Query: 103 IRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAIN-PCLSV 161 +R+ + D ++ K +G+ R H + + R ++K A +++ VA+ P + Sbjct: 147 LREITEADLERVQDKIRAAGLSDRSHE-----YIMGTFRRVWKHAFKRKIVAVECPVGKL 201 Query: 162 ERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFE-FLLYSGLRCSDSCR---AGVQHL 217 + PK +R T E++Q + + Q F L +G R S++ + V + Sbjct: 202 DIPKPVNTRLRVLTPEEIQALLAELATVDQTAHDLTVFALLTGCRASEAFKLRWENVDFV 261 Query: 218 QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGK--ETFFINNDKQKMNATQFSIWFKA 275 + +T K V L + +L G+ E F D +A S FK Sbjct: 262 REAALFPET-KNREPREVFLAADVLDMLKRRGPGRPGEYVFTKRDGTPYDAAPSS--FKT 318 Query: 276 KATKAGVNK--------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 + G N+ + H +R +AT +A G ++ +GWKT Y KG++ Sbjct: 319 ALERLGFNEGRALRDRATFHNLRHSAATYAARRGVPVKDMQTIFGWKTPSMVFRYAKGSE 378 Query: 328 RIR 330 ++ Sbjct: 379 DVQ 381 >gi|260062724|ref|YP_003195804.1| hypothetical protein RB2501_14074 [Robiginitalea biformata HTCC2501] gi|88784291|gb|EAR15461.1| hypothetical protein RB2501_14074 [Robiginitalea biformata HTCC2501] Length = 407 Score = 37.4 bits (85), Expect = 3.6, Method: Compositional matrix adjust. Identities = 37/169 (21%), Positives = 72/169 (42%), Gaps = 17/169 (10%) Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 P+S ++ +F V+ + N + ++ K K +P+TKE+M+ +++ E Sbjct: 172 PNSVSNHKGNLSAIFSKVVQDRWADRNFFVDIQTKKVKPRKNQPFTKEEMEAIQAYTKEF 231 Query: 190 SQPRLAF-EFLLYSGLRCSDSCRAGVQHLQNNIFSI----KTQKTGTIITVELPDGFMKL 244 F F+ YS +R + V+H+ ++ K K I+ +E F++ Sbjct: 232 DPLLYNFLRFIFYSFMRNREILSVQVKHIDMKKRTVAIETKADKISHILMIEPMYQFLED 291 Query: 245 LAM----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283 L + TP GK + N + K+N F+ F+A G++ Sbjct: 292 LGVGDLPDHYHIFTPSGKPGHWPTNPRDKVNF--FAKRFRAVRDHLGID 338 >gi|307307477|ref|ZP_07587211.1| integrase family protein [Shewanella baltica BA175] gi|306910152|gb|EFN40586.1| integrase family protein [Shewanella baltica BA175] Length = 376 Score = 37.4 bits (85), Expect = 3.6, Method: Compositional matrix adjust. Identities = 46/188 (24%), Positives = 76/188 (40%), Gaps = 18/188 (9%) Query: 79 RKSAHWG-SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFL 137 R + HW S +NS+ F + ++ GD +T +HI + + A + L Sbjct: 104 RYARHWKPSTLLNSQRGFTRHIAPVL---GDVPLAALTRQHIEQWFDGMHASKGMANRLL 160 Query: 138 TSMRVLFKWAVRQEY--VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-----SEGS 190 + V+ + A EY NPC +R K T R ++E++ K W E + Sbjct: 161 PLLSVMMQQAEVYEYRPAQSNPCKGFKRYK-STHSERYLSEEEL---KRLWLALDSHEKA 216 Query: 191 QPR--LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT 248 P + L+ +G RC++ C + + + KTG TV L +LL+ Sbjct: 217 SPVAVMVLRLLILTGCRCNEVCSVKWADYRQGHWYLPDSKTGA-KTVFLSSFARELLSDW 275 Query: 249 PIGKETFF 256 P E F Sbjct: 276 PQVSEHLF 283 >gi|229190701|ref|ZP_04317697.1| DNA integration/recombination/invertion protein [Bacillus cereus ATCC 10876] gi|228592834|gb|EEK50657.1| DNA integration/recombination/invertion protein [Bacillus cereus ATCC 10876] Length = 369 Score = 37.4 bits (85), Expect = 3.6, Method: Compositional matrix adjust. Identities = 26/118 (22%), Positives = 57/118 (48%), Gaps = 5/118 (4%) Query: 95 FESYFDQ-IIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVL---FKWAVRQ 150 + ++ +Q +I G K+ HI+ ++ + L R+L AV+Q Sbjct: 88 YRAFINQHVIPSIGMVALHKLNVIHIQKCYKTAIDKGIANNSILLMHRILKSALNLAVKQ 147 Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSD 208 ++ NP E PK++ I+ WT+E++++F + S+ S+ + + + +G+R + Sbjct: 148 NIISRNPADFAEIPKKEKPPIQTWTEEEVKKFLAH-SQESRYHIGYLLAITTGMRLGE 204 >gi|24376272|ref|NP_720380.1| phage integrase family site specific recombinase [Shewanella oneidensis MR-1] gi|24344844|gb|AAN52980.1|AE015912_5 site-specific recombinase, phage integrase family [Shewanella oneidensis MR-1] Length = 376 Score = 37.4 bits (85), Expect = 3.6, Method: Compositional matrix adjust. Identities = 46/188 (24%), Positives = 76/188 (40%), Gaps = 18/188 (9%) Query: 79 RKSAHWG-SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFL 137 R + HW S +NS+ F + ++ GD +T +HI + + A + L Sbjct: 104 RYARHWKPSTLLNSQRGFTRHIAPVL---GDVPLAALTRQHIEQWFDGMHASKGMANRLL 160 Query: 138 TSMRVLFKWAVRQEY--VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-----SEGS 190 + V+ + A EY NPC +R K T R ++E++ K W E + Sbjct: 161 PLLSVMMQQAEVYEYRPAQSNPCKGFKRYK-STHSERYLSEEEL---KRLWLALDSHEKA 216 Query: 191 QPR--LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT 248 P + L+ +G RC++ C + + + KTG TV L +LL+ Sbjct: 217 SPVAVMVLRLLILTGCRCNEVCSVKWADYRQGHWYLPDSKTGA-KTVFLSSFARELLSDW 275 Query: 249 PIGKETFF 256 P E F Sbjct: 276 PQVSEHLF 283 >gi|16263669|ref|NP_436462.1| integrase-like protein [Sinorhizobium meliloti 1021] gi|14524383|gb|AAK65874.1| Integrase/recombinase [Sinorhizobium meliloti 1021] Length = 385 Score = 37.4 bits (85), Expect = 3.6, Method: Compositional matrix adjust. Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 8/89 (8%) Query: 258 NNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKFSATISADAGATAHELMATYGWK 314 N D++ + ++ KA+ +AG++ SAHG+R T +A+ G E M K Sbjct: 302 NIDRRALTPQSVNLVLKARCEQAGLDPALFSAHGLRSGYLTEAANRGIPLPEAMQQSLHK 361 Query: 315 TVDQAETYTKGADRIRLGIKNSRRISSVV 343 +V QA +Y A+R KN R +V Sbjct: 362 SVTQAASYYNNAER-----KNGRAARLIV 385 >gi|315607090|ref|ZP_07882094.1| integrase/recombinase XerD [Prevotella buccae ATCC 33574] gi|315251144|gb|EFU31129.1| integrase/recombinase XerD [Prevotella buccae ATCC 33574] Length = 313 Score = 37.4 bits (85), Expect = 3.7, Method: Compositional matrix adjust. Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 2/82 (2%) Query: 244 LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAG 301 L+ + P ++ F+N + T I K +A AG+ K S H +R AT G Sbjct: 211 LMTIKPGEEDYVFLNRRGHHLTRTMILIMIKRQAVAAGIKKTISPHTLRHSFATALLKGG 270 Query: 302 ATAHELMATYGWKTVDQAETYT 323 A + A G +++ E YT Sbjct: 271 ADLRAIQAMLGHESIGTTEVYT 292 >gi|307313453|ref|ZP_07593075.1| integrase family protein [Sinorhizobium meliloti BL225C] gi|306899279|gb|EFN29915.1| integrase family protein [Sinorhizobium meliloti BL225C] Length = 385 Score = 37.4 bits (85), Expect = 3.7, Method: Compositional matrix adjust. Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 8/89 (8%) Query: 258 NNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKFSATISADAGATAHELMATYGWK 314 N D++ + ++ KA+ +AG++ SAHG+R T +A+ G E M K Sbjct: 302 NIDRRALTPQSVNLVLKARCEQAGLDPALFSAHGLRSGYLTEAANRGIPLPEAMQQSLHK 361 Query: 315 TVDQAETYTKGADRIRLGIKNSRRISSVV 343 +V QA +Y A+R KN R +V Sbjct: 362 SVTQAASYYNNAER-----KNGRAARLIV 385 >gi|323161906|gb|EFZ47780.1| phage integrase family protein [Escherichia coli E128010] Length = 281 Score = 37.4 bits (85), Expect = 3.7, Method: Compositional matrix adjust. Identities = 36/159 (22%), Positives = 67/159 (42%), Gaps = 6/159 (3%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR-KHTPSS 132 L ++ SA++ L+ ++ + + +++ G I +HIR ++ R + + + Sbjct: 6 LWEKFLASAYYSDLSPRTQKDYLQHQKKLLAVFGKVPADSIKPEHIRRYMDKRGEQSKTQ 65 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192 A +SM ++ W + YV NPC V + K K KE +++ S P Sbjct: 66 ANHEKSSMSRVYSWGYERGYVKGNPCAGVSKFKAKNRERYVTDKE----YQAVLSVAPLP 121 Query: 193 R-LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230 +A E R SD + + N+ I+ KTG Sbjct: 122 VFIAMEIAYLCAARVSDVLSLKWEQIGNDGIFIQQGKTG 160 >gi|294790009|ref|ZP_06755213.1| putative phage integrase [Simonsiella muelleri ATCC 29453] gi|294482052|gb|EFG29775.1| putative phage integrase [Simonsiella muelleri ATCC 29453] Length = 347 Score = 37.4 bits (85), Expect = 3.7, Method: Compositional matrix adjust. Identities = 37/170 (21%), Positives = 65/170 (38%), Gaps = 8/170 (4%) Query: 108 DFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAI---NPCLSVERP 164 D +IT +H+ + R PSSA + +F+ A + Y+ NP V+ Sbjct: 109 DAPLHEITPQHLNRFLAWRSSAPSSANVEIAFFSAIFEHAQKSGYIDFEKKNPVKGVK-- 166 Query: 165 KRKTEGIRPWTKEDMQQFKSFWSEGSQP-RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS 223 K K E + + + F + Q R + L +G R D C + + I + Sbjct: 167 KNKIEKRDNYINDKL--FDVVYEHADQQMRDLMDIALLTGQRPIDICSLHTSQISDGILN 224 Query: 224 IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWF 273 IK KT + E+ +++ F+N + +N + WF Sbjct: 225 IKQVKTSARLRFEISGSLKEIIDRIAPENGFLFLNKHGKPLNRQLITNWF 274 >gi|297172260|gb|ADI23238.1| integrase [uncultured nuHF2 cluster bacterium HF0770_13K08] Length = 342 Score = 37.4 bits (85), Expect = 3.8, Method: Compositional matrix adjust. Identities = 47/204 (23%), Positives = 83/204 (40%), Gaps = 12/204 (5%) Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK-TEGIRPWTKEDMQQFKSFWSEG 189 ++A+ + + AVR + NPC V+ KR+ TE I E Q ++ + Sbjct: 129 NTAVGYYALTKAALNQAVRDRIIQDNPCKHVQNIKRQDTERIFLTFAEIKQLSETLPKDE 188 Query: 190 SQPRLA--FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM 247 + +A F F ++GL + + ++++ KT T V L + + L+ Sbjct: 189 NSQEVARMFLFGCFTGLSLGNLETLTYKQIESDTVKFFRSKTKTWHHVPLNETALSLIGD 248 Query: 248 T----PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGAT 303 T P G+ N ++ + T W K K V+ H R AT++ +GA Sbjct: 249 TFDCDPNGR---IFNTPSRRYSQTLVGKWGKQAGIKKHVH--MHVSRHTFATLNLSSGAD 303 Query: 304 AHELMATYGWKTVDQAETYTKGAD 327 + + G K +D + Y K D Sbjct: 304 IYTVSKLIGHKKLDTTQIYAKVID 327 >gi|29348151|ref|NP_811654.1| integrase, site-specific recombinase [Bacteroides thetaiotaomicron VPI-5482] gi|253569574|ref|ZP_04846984.1| integrase [Bacteroides sp. 1_1_6] gi|29340054|gb|AAO77848.1| integrase, site-specific recombinase [Bacteroides thetaiotaomicron VPI-5482] gi|251841593|gb|EES69674.1| integrase [Bacteroides sp. 1_1_6] Length = 293 Score = 37.4 bits (85), Expect = 3.8, Method: Compositional matrix adjust. Identities = 54/238 (22%), Positives = 95/238 (39%), Gaps = 23/238 (9%) Query: 107 GDFDYRKITTKHIRSGVES---RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER 163 G FD ++ + IR + S R +T +S + L+S+R +K+ +RQ V ++P + Sbjct: 40 GKFDPLEVEGELIREWIVSLMDRGYTSTSVNRKLSSLRSFYKYLLRQGEVTVDPLRKITG 99 Query: 164 PKRKTEGIRPWTKE-------DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH 216 PK K + + + KE D F + +G + RL +G+R S+ + Sbjct: 100 PKNK-KPLPAFLKESEMDKLLDDTDFGEGF-KGCRDRLIIGVFYATGIRLSELIGLDDKD 157 Query: 217 LQNNIFSIK-TQKTGTIITVELPDGFMKLL--------AMTPIGKETFFINNDKQKMNAT 267 + + +K T K + D +L+ P E FF+ D +++ Sbjct: 158 VDFSASLLKVTGKRNKQRLIPFGDELKELMLEYINVRNETIPERSEAFFVKEDGERLYKN 217 Query: 268 QFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 K +K K S H +R AT + A + G ++V E YT Sbjct: 218 LVYNLVKRNLSKVATLKKRSPHVLRHTFATTMLNNDAELGAVKELLGHESVATTEIYT 275 >gi|295699756|ref|YP_003607649.1| integrase family protein [Burkholderia sp. CCGE1002] gi|295438969|gb|ADG18138.1| integrase family protein [Burkholderia sp. CCGE1002] Length = 584 Score = 37.4 bits (85), Expect = 3.8, Method: Compositional matrix adjust. Identities = 32/109 (29%), Positives = 48/109 (44%), Gaps = 15/109 (13%) Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINP--CLSVERPKRKT--EGIRPWTKEDMQ 180 +R +P SA L + LF+W V Q YV NP L+V +R T + R T + Q Sbjct: 314 ARSLSPRSAGYALAVLNALFRWLVEQRYVLGNPFTGLTVRGGQRTTPFDTARALTSSEWQ 373 Query: 181 QFKSF---------WSEGSQPRLAF--EFLLYSGLRCSDSCRAGVQHLQ 218 + W + RL F +FL +GLR + A ++ +Q Sbjct: 374 AVRGLADRLEGSYGWQAPAAQRLRFLLDFLYATGLRAQELVGATLRDIQ 422 >gi|93004888|ref|YP_579325.1| tyrosine recombinase XerD [Psychrobacter cryohalolentis K5] gi|92392566|gb|ABE73841.1| Tyrosine recombinase XerD [Psychrobacter cryohalolentis K5] Length = 312 Score = 37.4 bits (85), Expect = 3.8, Method: Compositional matrix adjust. Identities = 50/229 (21%), Positives = 81/229 (35%), Gaps = 20/229 (8%) Query: 118 HIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177 H S + TP + + L+S+R + W + NPC ++ PK + + Sbjct: 69 HCLSILTQDGKTPRTQARMLSSLRQFYLWMIASNLREDNPCERIKSPKLGRPLPKDLAEA 128 Query: 178 DMQQF----KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI----FSIKTQKT 229 D+ S + G + + E L GLR S+ ++ + N + K KT Sbjct: 129 DVDNLLAAPDSSTALGLRDKAMLEVLYACGLRVSELVNLSLEQVNLNSGWLQITGKGNKT 188 Query: 230 GTIITVE---------LPDGFMKLLAMTPIGK-ETFFINNDKQKMNATQFSIWFKAKATK 279 + E L G L+A G + F+ M F K A Sbjct: 189 RLVPLGEYAADALEDYLTHGRGDLIAHLKAGNCQAVFLTAQGGYMTRQNFWYLLKKYAKV 248 Query: 280 AGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 A ++K S H +R AT + GA + G + + YT A Sbjct: 249 ASIDKDLSPHTLRHAFATHLLNHGADLRSVQLLLGHSDLSTTQIYTHVA 297 >gi|326390625|ref|ZP_08212180.1| integrase family protein [Thermoanaerobacter ethanolicus JW 200] gi|325993303|gb|EGD51740.1| integrase family protein [Thermoanaerobacter ethanolicus JW 200] Length = 399 Score = 37.4 bits (85), Expect = 3.8, Method: Compositional matrix adjust. Identities = 36/147 (24%), Positives = 70/147 (47%), Gaps = 9/147 (6%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS-GDFDYRKITTKHIRSGVES--R 126 TLK + E+ K++ G + + S+ + I+ GD+ K+ I+ + + Sbjct: 67 TLKEYLDEWIKTSLKGRVKATTYQSYVKIIELYIKPVLGDYKISKLNPLLIQDMLTNMMN 126 Query: 127 KHTPSSAIQFL-TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 K+ + I++ T ++ AV+ + ++ NPC +V+ PK+ + ++ T E Q K F Sbjct: 127 KNLSARTIRYTHTILKNALNQAVKWQIISNNPCNNVDLPKQTKQEMKVLTPE---QAKKF 183 Query: 186 WSEGSQPR--LAFEFLLYSGLRCSDSC 210 R + FE LL SG+R ++ Sbjct: 184 LEACVYNRWGILFEVLLTSGMRPGEAL 210 >gi|229824242|ref|ZP_04450311.1| hypothetical protein GCWU000282_01546 [Catonella morbi ATCC 51271] gi|229786596|gb|EEP22710.1| hypothetical protein GCWU000282_01546 [Catonella morbi ATCC 51271] Length = 331 Score = 37.4 bits (85), Expect = 3.8, Method: Compositional matrix adjust. Identities = 32/141 (22%), Positives = 63/141 (44%), Gaps = 8/141 (5%) Query: 99 FDQIIRKSGDFDYRKITTKHIR---SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAI 155 F I SG D ++I + +R + + + + +S + L+S+R F + + Q ++ Sbjct: 62 FQSFIETSGGGDLKQIAYQDVRLYLAYLNEQAYAKTSIRRKLSSLRSFFTYCLSQGWIET 121 Query: 156 NPCLSVE-RPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSC 210 NP V+ + K+KT + +E Q F S + + R+ E L +G+R S+ Sbjct: 122 NPMELVQYQVKKKTLPQFFYEQELTQLFDSLYKREDDAAWRDRMLLEVLYATGMRVSELS 181 Query: 211 RAGVQHLQNNIFSIKTQKTGT 231 ++ L + I+ G Sbjct: 182 ELSLERLNLEVQLIRVLGKGN 202 >gi|260425160|ref|ZP_05779169.1| site-specific recombinase, phage integrase family [Dialister invisus DSM 15470] gi|260404344|gb|EEW97891.1| site-specific recombinase, phage integrase family [Dialister invisus DSM 15470] Length = 274 Score = 37.4 bits (85), Expect = 3.8, Method: Compositional matrix adjust. Identities = 28/113 (24%), Positives = 49/113 (43%), Gaps = 2/113 (1%) Query: 118 HIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPC-LSVERPKRKTEGIRPWTK 176 +I G++ RK++P+ + +F +AV + NP L+ K + ++ WT Sbjct: 23 YITKGLQ-RKYSPTYVKVLHVQLSAIFNYAVTYYRLPSNPAKLAGSIGKTRAHTMKFWTI 81 Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229 E +F S + S L F L Y+G+R + + SI+ KT Sbjct: 82 EQFTRFISSFPADSTEYLIFNLLFYTGMRSGELLALTLADFYEREKSIRINKT 134 >gi|313903971|ref|ZP_07837351.1| integrase family protein [Eubacterium cellulosolvens 6] gi|313471120|gb|EFR66442.1| integrase family protein [Eubacterium cellulosolvens 6] Length = 361 Score = 37.0 bits (84), Expect = 3.9, Method: Compositional matrix adjust. Identities = 51/242 (21%), Positives = 97/242 (40%), Gaps = 44/242 (18%) Query: 93 ISFESYFDQI--IRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQ 150 + E Y D + + S D DY K I+ Q ++++RV + + + Sbjct: 92 LDLEEYMDYLKAYKNSEDSDYVTNGEKGIK--------------QKMSALRVFYAYYYKH 137 Query: 151 EYVAINPCLSVERPK-RKTEGIRPWTKE--DMQQF------------KSFWSEGSQPRLA 195 E + NP + V+ PK + E IR E D+ F +S+W + A Sbjct: 138 EMIRTNPTVLVDMPKLHEKEIIRLDADEVADLLDFVESCGEELSPHQRSYWEKSKLRDTA 197 Query: 196 F-EFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGKE 253 LL +G+R S+ ++ + IK +K G + V L Sbjct: 198 IITLLLGTGIRVSECVGLDLEDVDFRNNGIKVFRKGGNEMMVYFGGEVESALKA------ 251 Query: 254 TFFINNDKQKMNATQ---FSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMAT 310 +I ++ + Q ++++ A+ + V + V+K+++ I++ T H+L +T Sbjct: 252 --YIETERAAITPQQGHEHALFYSAQRRRINVKSVENLVKKYTSRITSTKKITPHKLRST 309 Query: 311 YG 312 YG Sbjct: 310 YG 311 >gi|225156559|ref|ZP_03724893.1| Site-specific recombinase XerD-like protein [Opitutaceae bacterium TAV2] gi|224802887|gb|EEG21135.1| Site-specific recombinase XerD-like protein [Opitutaceae bacterium TAV2] Length = 448 Score = 37.0 bits (84), Expect = 3.9, Method: Compositional matrix adjust. Identities = 17/76 (22%), Positives = 36/76 (47%), Gaps = 2/76 (2%) Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW--SEGSQP 192 ++ ++ W VR + + NP V RP + + +RP + + + + ++ + Sbjct: 139 EYQAAVNAFLNWLVRSDRIERNPLAKVRRPDTRGKAVRPSRSFTLDELAALFAAAKSTSH 198 Query: 193 RLAFEFLLYSGLRCSD 208 R+AF L Y+G R + Sbjct: 199 RIAFMLLAYTGQRVKE 214 >gi|41179218|ref|NP_958556.1| putative integrase [Lactobacillus prophage Lj965] gi|42518375|ref|NP_964305.1| Lj965 prophage integrase [Lactobacillus johnsonii NCC 533] gi|38731488|gb|AAR27434.1| putative integrase [Lactobacillus prophage Lj965] gi|41582660|gb|AAS08271.1| Lj965 prophage integrase [Lactobacillus johnsonii NCC 533] Length = 391 Score = 37.0 bits (84), Expect = 4.0, Method: Compositional matrix adjust. Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 8/81 (9%) Query: 137 LTSMRVLFKWAVRQEYVAINPCLSV------ERPKRKTEGIRPWTKEDMQQFKSFWSE-G 189 + LF++ +R YV+ NP + RP+R TE +T+E++ QF E G Sbjct: 138 INEFNALFEYGIRLNYVSENPLKRIIIPKKTSRPRRDTEH-NVYTREELNQFLEVAKEYG 196 Query: 190 SQPRLAFEFLLYSGLRCSDSC 210 F+ L +GLR S++ Sbjct: 197 LVQYTYFKLLSATGLRKSEAL 217 >gi|71042126|pdb|1Z1B|A Chain A, Crystal Structure Of A Lambda Integrase Dimer Bound To A Coc' Core Site gi|71042127|pdb|1Z1B|B Chain B, Crystal Structure Of A Lambda Integrase Dimer Bound To A Coc' Core Site Length = 356 Score = 37.0 bits (84), Expect = 4.0, Method: Compositional matrix adjust. Identities = 48/215 (22%), Positives = 82/215 (38%), Gaps = 11/215 (5%) Query: 25 FRKGHGRRIRLPYPHESTFIPAYMSALTGST--PKREYINSPRKKPTTLKWLISEYRKSA 82 F G RRI + + I A + +G P INS TL + Y K Sbjct: 35 FGLGRDRRIAI-----TEAIQANIELFSGHKHKPLTARINS--DNSVTLHSWLDRYEKIL 87 Query: 83 HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKHTPSSAIQFLTSM 140 + + I++ S I R D ITTK I + + + +SA +++ Sbjct: 88 ASRGIKQKTLINYMSKIKAIRRGLPDAPLEDITTKEIAAMLNGYIDEGKAASAKLIRSTL 147 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL 200 F+ A+ + ++ N + K K R E ++ +++ S RLA E + Sbjct: 148 SDAFREAIAEGHITTNHVAATRAAKSKVRRSRLTADEYLKIYQAAESSPCWLRLAMELAV 207 Query: 201 YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235 +G R D C + + ++ KTG I + Sbjct: 208 VTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAI 242 >gi|254303771|ref|ZP_04971129.1| possible integrase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148323963|gb|EDK89213.1| possible integrase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 353 Score = 37.0 bits (84), Expect = 4.0, Method: Compositional matrix adjust. Identities = 28/108 (25%), Positives = 50/108 (46%), Gaps = 4/108 (3%) Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 RK+ SS +++LF W VR + + NP V+R K +T+ D +F Sbjct: 117 RKYKGSSIRTINAYVKMLFTWCVRYKNLTSNPFDMVDRLKLETKKRMDIITVD--EFNQI 174 Query: 186 WSEGSQP--RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231 + + P +L F+ L ++GLR ++ + + N +I K+ T Sbjct: 175 VEQVNNPDMKLMFKLLFWTGLRIGEARALKIDDIDFNNKTISVTKSYT 222 >gi|262369523|ref|ZP_06062851.1| site-specific tyrosine recombinase [Acinetobacter johnsonii SH046] gi|262315591|gb|EEY96630.1| site-specific tyrosine recombinase [Acinetobacter johnsonii SH046] Length = 308 Score = 37.0 bits (84), Expect = 4.1, Method: Compositional matrix adjust. Identities = 44/193 (22%), Positives = 78/193 (40%), Gaps = 29/193 (15%) Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPC--LSVERPKRKTEGI----- 171 I VE ++ + SS + L+S+R KWA + +++A NP ++R R G+ Sbjct: 59 IAQKVEYQQLSSSSLQRMLSSIRQFMKWAEQGQHLAFNPADDFQLKRKPRPLPGLVDIET 118 Query: 172 ------RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK 225 + +++++Q W + E L SGLR ++ ++ + N ++ Sbjct: 119 INQILDQALPEKEVEQ--QMWYRD---KALLELLYSSGLRLAEVQGLRIKDIDFNRQLLR 173 Query: 226 TQKTGTIITV-----ELPDGFMKLLAMTPIGKETF------FINNDKQKMNATQFSIWFK 274 G V + D MK L++ P+ F FI + Q K Sbjct: 174 ITGKGNKTRVVPFGSKAKDAVMKWLSIYPLWNGDFVPDAQVFITQKGNPLGMRQIENRVK 233 Query: 275 AKATKAGVNKSAH 287 +A +AGVN H Sbjct: 234 FQAQRAGVNIDLH 246 >gi|303248297|ref|ZP_07334559.1| integrase family protein [Desulfovibrio fructosovorans JJ] gi|302490322|gb|EFL50234.1| integrase family protein [Desulfovibrio fructosovorans JJ] Length = 331 Score = 37.0 bits (84), Expect = 4.2, Method: Compositional matrix adjust. Identities = 52/235 (22%), Positives = 96/235 (40%), Gaps = 24/235 (10%) Query: 113 KITTKHIR---SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169 K+ +H R + + R+ +S + L+++R F++ +R++ VA +P ++ PK Sbjct: 66 KVAREHGRGFLAELHRRREAKTSMGRKLSALRGFFRYMLRKKLVAADPLAGLKNPKTDKR 125 Query: 170 GIRPWTKEDMQQFKSFW-----SEGSQP---RLAFEFLLY-SGLRCSD---------SCR 211 + ++ S ++GS+ LA LLY SGLR ++ S Sbjct: 126 QPKALNVDEAVALVSPAPGAPAADGSREACRDLALAELLYGSGLRVAEAVGLDLDDVSIA 185 Query: 212 AGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKE-TFFINNDKQKMNATQFS 270 GV + + L + M+ TP +E FF+ + ++N Q + Sbjct: 186 QGVARVYGKGGKERLAPLSDASRERLREYAMRRAEFTPDPREQAFFLGSRGGRLNRRQAA 245 Query: 271 IWFKAKATKAGVNKSAHG--VRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 A A +AG+ K H +R AT ++GA + G + + YT Sbjct: 246 RIVDALAREAGIAKHTHPHMLRHSFATHLLESGADMRSVQELLGHARLSTTQRYT 300 >gi|194017070|ref|ZP_03055682.1| DNA integration/recombination [Bacillus pumilus ATCC 7061] gi|194010938|gb|EDW20508.1| DNA integration/recombination [Bacillus pumilus ATCC 7061] Length = 363 Score = 37.0 bits (84), Expect = 4.2, Method: Compositional matrix adjust. Identities = 38/137 (27%), Positives = 60/137 (43%), Gaps = 22/137 (16%) Query: 94 SFESYFDQII---RKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLF----KW 146 S++S +D II + G + +T K + K P A LT++ +F + Sbjct: 82 SWDSRYDSIIVIKKNLGSCRVKDVTEKTYEGFLN--KIAPEYAKNTLTNIHQVFNMMIRE 139 Query: 147 AVRQEYVAINPCLSVERP-----------KRKTEGIRPWTKEDMQQFKSFWSEGSQPR-L 194 AVR Y NP +V P + ++ W KE+++ F S +PR L Sbjct: 140 AVRDSYFKDNPIHAVNLPKKAKEKKVEELDEDLKDMKFWEKEEIKLFLQVVSRKGRPRDL 199 Query: 195 A-FEFLLYSGLRCSDSC 210 A F L+YSGLR ++ Sbjct: 200 AMFLLLIYSGLRIGEAV 216 >gi|330432804|gb|AEC17863.1| site-specific tyrosine recombinase XerC [Gallibacterium anatis UMN179] Length = 296 Score = 37.0 bits (84), Expect = 4.2, Method: Compositional matrix adjust. Identities = 35/142 (24%), Positives = 63/142 (44%), Gaps = 17/142 (11%) Query: 83 HWGSLAVNSRIS---FESYFDQIIR------KSGDFDYRKITTKHIR----SGVESRKHT 129 +W L + ++S +SY QI+ G D+R++ IR G +S H Sbjct: 9 YWDYLRIERQLSAKTLQSYQQQIVACVELLTNEGITDWRQVDGSVIRFILTQGKKSGLHE 68 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE- 188 S A++ L+S+R F++ +R + + +NP + PK + E + Q S+ Sbjct: 69 HSLALR-LSSLRGFFQFLLRNQQIKVNPTDGISAPKAGKRLPKSIDAESISQLLDIKSKD 127 Query: 189 --GSQPRLAFEFLLYSGLRCSD 208 + + E + SGLR S+ Sbjct: 128 PLSLRDKAIMELMYSSGLRLSE 149 >gi|282852712|ref|ZP_06262054.1| toxin-antitoxin system, toxin component, PIN family [Lactobacillus gasseri 224-1] gi|282556454|gb|EFB62074.1| toxin-antitoxin system, toxin component, PIN family [Lactobacillus gasseri 224-1] Length = 386 Score = 37.0 bits (84), Expect = 4.2, Method: Compositional matrix adjust. Identities = 38/145 (26%), Positives = 68/145 (46%), Gaps = 13/145 (8%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES-RKHTPS 131 WL Y+ + +L+ N+++ F + I+ + G+ KITT + V K P Sbjct: 81 WL-ENYKNTVKVSTLS-NTKLFFRLH---ILPELGNLYIEKITTFKCQKIVNKWFKELPK 135 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT----KEDMQQFKSFWS 187 + + +FK+AV + +A NP SV +PK + E +P+T K ++ F Sbjct: 136 TYKVYTNLASNIFKFAVNNDLIAKNPMKSVIKPKLQVEK-KPFTNFYSKNELNIFLKEAK 194 Query: 188 E--GSQPRLAFEFLLYSGLRCSDSC 210 E G + + F L Y+G+R ++ Sbjct: 195 ECKGLKVYMLFRLLAYTGMRRGEAL 219 >gi|317481431|ref|ZP_07940498.1| phage integrase [Bacteroides sp. 4_1_36] gi|316902416|gb|EFV24303.1| phage integrase [Bacteroides sp. 4_1_36] Length = 385 Score = 37.0 bits (84), Expect = 4.3, Method: Compositional matrix adjust. Identities = 52/213 (24%), Positives = 91/213 (42%), Gaps = 30/213 (14%) Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR--KTEGIRPW-TKEDMQQF-----K 183 + + F +++ +F AVR +A NP + R +R + R + T +++++F + Sbjct: 166 TLVLFEETVKAIFNKAVRDGLMASNPVQELTREERFHAPDKHREYLTADELKRFLAVEPQ 225 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRA---------GVQHLQNNIFSIKTQKTGTIIT 234 ++ E Q AF F +GLR D R GVQ + S+ KT + Sbjct: 226 TYMEEVVQR--AFGFSCMTGLRLGDMQRLRWSDIKDVNGVQTV-----SVIQHKTKRPVA 278 Query: 235 VELPDGFMKLLAMTP-IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRK 291 V L + LL P G++ K+ N ++ K KAG+ K + H R Sbjct: 279 VPLNALALSLLPPRPENGEDGIIFPLVKKPDNVAKYVRRIK---DKAGIEKDFTYHSSRH 335 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTK 324 +AT++ AGA + + G ++ + Y K Sbjct: 336 SAATLAITAGAELYSVSKILGHGSIASTQVYAK 368 >gi|290475015|ref|YP_003467899.1| putative integrase (Gifsy-1 prophage protein) [Xenorhabdus bovienii SS-2004] gi|289174332|emb|CBJ81126.1| putative integrase (Gifsy-1 prophage protein) [Xenorhabdus bovienii SS-2004] Length = 411 Score = 37.0 bits (84), Expect = 4.3, Method: Compositional matrix adjust. Identities = 63/243 (25%), Positives = 103/243 (42%), Gaps = 33/243 (13%) Query: 16 TRHGKIIYYFR---KGHGRRIRL-PYPHESTFIPAYMSALTGSTPKREYINSPRK----- 66 T GK+I+ FR G G RI + YP +T + A+ + E ++P+ Sbjct: 33 TPKGKVIFQFRYRWDGKGDRIDIGTYP--ATSLKDARDAVIFYRGELEQHHNPKMVKRVL 90 Query: 67 -----KPTTLKWLISEYRKSAHWGSLAVNSRI--SFESYFDQIIRKSGDFDYRKITTKHI 119 K T++ LI ++ ++A G L + I SFE Y + K G + ++T Sbjct: 91 RESVLKAVTVERLIRDWWETAMKGVLVKANEILRSFELY---VFPKIGKLPHDEVTLHIW 147 Query: 120 RSGVES-RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV---ERPKRKTEGIRPWT 175 + +E K PS ++ L + + +WAVR+ I P V + ++KT Sbjct: 148 LALIEDVTKQHPSIGVRILNNTKNAHRWAVRRGMTKITPLSDVLISDLGRKKTNKDDSTL 207 Query: 176 KED--MQQFKSFWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSI--KTQ 227 E+ + FK S PR L + L G R + +A V + NI+ I + Sbjct: 208 SEERLIVLFKIIDSPSYNPRNALIIKLCLLFGCRIGELLKAKVTDFDYEKNIWIIPPENH 267 Query: 228 KTG 230 KTG Sbjct: 268 KTG 270 >gi|281491512|ref|YP_003353492.1| phage integrase [Lactococcus lactis subsp. lactis KF147] gi|281375230|gb|ADA64743.1| Phage protein, integrase [Lactococcus lactis subsp. lactis KF147] Length = 273 Score = 37.0 bits (84), Expect = 4.4, Method: Compositional matrix adjust. Identities = 70/271 (25%), Positives = 109/271 (40%), Gaps = 40/271 (14%) Query: 62 NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121 N+ + TTL+ L +Y S + SL + I F+ Y DF Y+ S Sbjct: 19 NTIKNYLTTLRQL-DDYIVSNDF-SLDKETLIEFKQYLK-------DFQYK--------S 61 Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP-WTKEDMQ 180 G + + + Q L + V KW + YV+ LSV+ K +T+ R T+ D + Sbjct: 62 G---KNYKLKTINQKLIIVNVYLKWLETEGYVS--GRLSVKLLKSQTKEHRESITEADYK 116 Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240 + S + RL + +G+R S+ C V+ L I I+ + IIT+ P Sbjct: 117 RLIK-NSTTEEMRLFILVIGNTGMRISEVCSFKVEDLNKKIIVIENKGKQRIITI--PQ- 172 Query: 241 FMKLLAMTPIGK----ETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA---HGVRKFS 293 F+K + + K ET F N + + + K A A VNK H +R + Sbjct: 173 FLKKQLKSYVKKAGIEETIFYKNQR------TYRVNLKKIAGIAKVNKEKVYPHSIRHYF 226 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTK 324 A G A L G + + YTK Sbjct: 227 AKSFLMNGGDATVLQQLLGHEQIATTTIYTK 257 >gi|314948558|ref|ZP_07851938.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus faecium TX0082] gi|313645055|gb|EFS09635.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus faecium TX0082] Length = 382 Score = 37.0 bits (84), Expect = 4.4, Method: Compositional matrix adjust. Identities = 39/147 (26%), Positives = 68/147 (46%), Gaps = 16/147 (10%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE--SRKHTP 130 WL S Y+K+ S + ++I F + I K G+ KI T + + V S K + Sbjct: 76 WLES-YKKTVKESSYS-RTKIIFNKH---IYPKFGNIKLSKINTAYCQKVVNDWSEKGSS 130 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLS--VERPKRKTE-GIRPWTKEDMQQFKSFWS 187 F+ M +FK+A+ + NP L+ + +P+ KT+ ++ +TKE ++ F + S Sbjct: 131 KQYPLFVNYMNKVFKYAINIGLTSDNPTLNLIIPKPQIKTDKKLKLYTKEQLELFLNEVS 190 Query: 188 EGSQPRLA------FEFLLYSGLRCSD 208 + P F L +SG R + Sbjct: 191 QEQNPYFKNRDYTLFRLLAFSGCRIGE 217 >gi|258516772|ref|YP_003192994.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771] gi|257780477|gb|ACV64371.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771] Length = 389 Score = 37.0 bits (84), Expect = 4.4, Method: Compositional matrix adjust. Identities = 26/96 (27%), Positives = 42/96 (43%), Gaps = 3/96 (3%) Query: 111 YRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170 Y + IR + +P++ + + +F AV+ + + NP L VE PK K Sbjct: 117 YGNLQEPGIREDGKEGTLSPATVLYHHRLLTNIFNAAVKWQIILTNPALRVEAPKAKKHK 176 Query: 171 IRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRC 206 + +ED S E QP L F+ ++Y L C Sbjct: 177 ATSYEEEDTAALLSALEE--QP-LKFQAIVYIALGC 209 >gi|228939736|ref|ZP_04102317.1| DNA integration/recombination/invertion protein [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228972599|ref|ZP_04133203.1| DNA integration/recombination/invertion protein [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228979206|ref|ZP_04139549.1| DNA integration/recombination/invertion protein [Bacillus thuringiensis Bt407] gi|228780563|gb|EEM28787.1| DNA integration/recombination/invertion protein [Bacillus thuringiensis Bt407] gi|228787140|gb|EEM35115.1| DNA integration/recombination/invertion protein [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228819968|gb|EEM66012.1| DNA integration/recombination/invertion protein [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326940330|gb|AEA16226.1| DNA integration/recombination/inversion protein [Bacillus thuringiensis serovar chinensis CT-43] Length = 369 Score = 37.0 bits (84), Expect = 4.4, Method: Compositional matrix adjust. Identities = 25/111 (22%), Positives = 52/111 (46%), Gaps = 4/111 (3%) Query: 101 QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVL---FKWAVRQEYVAINP 157 +I G K+ HI+ ++ + L R+L AV+Q ++ NP Sbjct: 95 HVIPSIGMVALHKLNVIHIQKCYKTAIDKGIANNSILLMHRILKSALNLAVKQNIISRNP 154 Query: 158 CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSD 208 E PK++ I+ WT+E++++F + S+ S+ + + + +G+R + Sbjct: 155 AEFAEIPKKEKTPIQTWTEEEVKKFLAH-SQESRYHIGYLLAITTGMRLGE 204 >gi|154250813|ref|YP_001411637.1| integrase family protein [Parvibaculum lavamentivorans DS-1] gi|154154763|gb|ABS61980.1| integrase family protein [Parvibaculum lavamentivorans DS-1] Length = 389 Score = 37.0 bits (84), Expect = 4.4, Method: Compositional matrix adjust. Identities = 18/67 (26%), Positives = 33/67 (49%) Query: 114 ITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173 I + I ++ TP A +R+ F WA R+ YV +PC ++ PK+ R Sbjct: 133 IQAREISRIIDKMHKTPGEARHAFAVIRLFFNWAFRRGYVDRSPCERLQAPKQSLPRDRV 192 Query: 174 WTKEDMQ 180 T+++++ Sbjct: 193 LTQDEIR 199 >gi|46908189|ref|YP_014578.1| integrase/recombinase XerD [Listeria monocytogenes str. 4b F2365] gi|47093384|ref|ZP_00231151.1| integrase/recombinase XerD [Listeria monocytogenes str. 4b H7858] gi|226224560|ref|YP_002758667.1| integrase/recombinase [Listeria monocytogenes Clip81459] gi|254825549|ref|ZP_05230550.1| integrase/recombinase XerD [Listeria monocytogenes FSL J1-194] gi|254852857|ref|ZP_05242205.1| integrase/recombinase XerD [Listeria monocytogenes FSL R2-503] gi|254931873|ref|ZP_05265232.1| integrase/recombinase XerD [Listeria monocytogenes HPB2262] gi|254992940|ref|ZP_05275130.1| integrase/recombinase [Listeria monocytogenes FSL J2-064] gi|255520096|ref|ZP_05387333.1| integrase/recombinase [Listeria monocytogenes FSL J1-175] gi|300763733|ref|ZP_07073730.1| tyrosine recombinase XerD [Listeria monocytogenes FSL N1-017] gi|71153414|sp|Q71Y59|XERD_LISMF RecName: Full=Tyrosine recombinase xerD gi|46881459|gb|AAT04755.1| integrase/recombinase XerD [Listeria monocytogenes serotype 4b str. F2365] gi|47018255|gb|EAL09021.1| integrase/recombinase XerD [Listeria monocytogenes str. 4b H7858] gi|225877022|emb|CAS05731.1| Putative integrase/recombinase [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258606190|gb|EEW18798.1| integrase/recombinase XerD [Listeria monocytogenes FSL R2-503] gi|293583424|gb|EFF95456.1| integrase/recombinase XerD [Listeria monocytogenes HPB2262] gi|293594790|gb|EFG02551.1| integrase/recombinase XerD [Listeria monocytogenes FSL J1-194] gi|300515469|gb|EFK42519.1| tyrosine recombinase XerD [Listeria monocytogenes FSL N1-017] gi|328466303|gb|EGF37460.1| tyrosine recombinase xerD [Listeria monocytogenes 1816] gi|328472797|gb|EGF43646.1| tyrosine recombinase xerD [Listeria monocytogenes 220] Length = 297 Score = 37.0 bits (84), Expect = 4.5, Method: Compositional matrix adjust. Identities = 45/213 (21%), Positives = 87/213 (40%), Gaps = 24/213 (11%) Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191 S +++ S+R F + + ++ +P + +E PK+ + +D+++ S S+ S Sbjct: 70 SVARYIASLRSFFHYLMHDGKMSHDPMIQIETPKQAQGLPKVLNLDDVEKLLS-SSDTST 128 Query: 192 P-----RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-------------TII 233 P + E L +GLR ++ + L ++ I+T G T++ Sbjct: 129 PLGLRDQAMMEILYATGLRVTELVSLKMDDLHLHMGFIQTIGKGDKERIIPLGKTATTVL 188 Query: 234 TVELPDGFMKLLAMTPIGKETF-FINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290 L + KL P + F F+N+ Q + F K A ++G+ K + H +R Sbjct: 189 EKYLEEARPKL--RRPKYRNDFVFLNHHGQGLTRQGFWKILKGIAKESGIEKPITPHTLR 246 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYT 323 AT + GA + G + + YT Sbjct: 247 HSFATHLLENGADLRSVQELLGHADISTTQIYT 279 >gi|126173818|ref|YP_001049967.1| phage integrase family protein [Shewanella baltica OS155] gi|125997023|gb|ABN61098.1| phage integrase family protein [Shewanella baltica OS155] Length = 376 Score = 37.0 bits (84), Expect = 4.5, Method: Compositional matrix adjust. Identities = 46/188 (24%), Positives = 76/188 (40%), Gaps = 18/188 (9%) Query: 79 RKSAHWG-SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFL 137 R + HW S +NS+ F + ++ GD +T +HI + + A + L Sbjct: 104 RYARHWKPSTLLNSQRGFTRHIAPVL---GDVPLAALTRQHIEQWFDGMHASKGMANRLL 160 Query: 138 TSMRVLFKWAVRQEY--VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-----SEGS 190 + V+ + A EY NPC +R K T R ++E++ K W E + Sbjct: 161 PLLSVMMQQAEVYEYRPAQSNPCKGFKRYK-STHSERYLSEEEL---KRLWLALDSHEKA 216 Query: 191 QPR--LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT 248 P + L+ +G RC++ C + + + KTG TV L +LL+ Sbjct: 217 SPVAVMVLRLLILTGCRCNEVCSVKWADYRQGHWYLPDSKTGA-KTVFLSSFARELLSDW 275 Query: 249 PIGKETFF 256 P E F Sbjct: 276 PQVSEHIF 283 >gi|116328183|ref|YP_797903.1| tyrosine site-specific recombinase XerC [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116330907|ref|YP_800625.1| tyrosine site-specific recombinase XerC [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116120927|gb|ABJ78970.1| Tyrosine site-specific recombinase XerC [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116124596|gb|ABJ75867.1| Tyrosine site-specific recombinase XerC [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 311 Score = 37.0 bits (84), Expect = 4.5, Method: Compositional matrix adjust. Identities = 45/203 (22%), Positives = 75/203 (36%), Gaps = 18/203 (8%) Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA- 195 L+S+R +K +R + + NP + PK + E + + + ++ F +E + L Sbjct: 89 LSSLRTFYKVLLRDDQIESNPATRISFPKVRKEVPKNFRINETEEILEFEAERTSEILEI 148 Query: 196 -----FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-----TIITVELPDGFMKLL 245 E L SGLR + A + L ++ +K G E D + L Sbjct: 149 RDKAMIEVLYSSGLRVFELVNAKLGSLSKDLTVLKVLGKGQKERFVYFGKEAVDSLRRYL 208 Query: 246 AMT----PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299 P KE F+N +K+ + K G K + H R AT D Sbjct: 209 EYRNVSFPDVKEI-FLNQKGKKLTTRGVRYILNERRKKMGWEKKITPHKFRHTFATDLLD 267 Query: 300 AGATAHELMATYGWKTVDQAETY 322 AGA + G ++ + Y Sbjct: 268 AGADIRAVQELLGHSSLSTTQIY 290 >gi|94313439|ref|YP_586648.1| Tyrosine-based site-specific recombinase [Cupriavidus metallidurans CH34] gi|93357291|gb|ABF11379.1| Tyrosine-based site-specific recombinase [Cupriavidus metallidurans CH34] Length = 559 Score = 37.0 bits (84), Expect = 4.5, Method: Compositional matrix adjust. Identities = 27/108 (25%), Positives = 47/108 (43%), Gaps = 15/108 (13%) Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINP-------------CLSVERPKRKTEGIRPWT 175 +P SA L + LF+W V+Q YV NP L V + E + + Sbjct: 301 SPRSAAYSLQVLGALFRWLVQQRYVLANPFAGIKVRGGAKTAALDVSHAFSEGEWLLTRS 360 Query: 176 KEDMQQFKSFWSEGSQPRLAF--EFLLYSGLRCSDSCRAGVQHLQNNI 221 D ++ W + RL F +F +GLR S+ A +++++ ++ Sbjct: 361 IADGLEWSYGWEASAAQRLRFILDFTYATGLRASELVGATLRNVETDV 408 >gi|307322123|ref|ZP_07601498.1| integrase family protein [Sinorhizobium meliloti AK83] gi|306892248|gb|EFN23059.1| integrase family protein [Sinorhizobium meliloti AK83] Length = 391 Score = 37.0 bits (84), Expect = 4.6, Method: Compositional matrix adjust. Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 8/89 (8%) Query: 258 NNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKFSATISADAGATAHELMATYGWK 314 N D++ + ++ KA+ +AG++ SAHG+R T +A+ G E M K Sbjct: 308 NVDRRALTPQSINLILKARCEQAGLDPALFSAHGLRSGYLTEAANRGIPLPEAMQQSLHK 367 Query: 315 TVDQAETYTKGADRIRLGIKNSRRISSVV 343 +V QA +Y A+R KN R +V Sbjct: 368 SVTQAASYYNNAER-----KNGRAARLIV 391 >gi|69245161|ref|ZP_00603285.1| Phage integrase [Enterococcus faecium DO] gi|257879619|ref|ZP_05659272.1| phage integrase [Enterococcus faecium 1,230,933] gi|257890286|ref|ZP_05669939.1| phage integrase [Enterococcus faecium 1,231,410] gi|293560121|ref|ZP_06676625.1| site-specific recombinase, phage integrase family [Enterococcus faecium E1162] gi|314938185|ref|ZP_07845490.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus faecium TX0133a04] gi|314943771|ref|ZP_07850506.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus faecium TX0133C] gi|314951140|ref|ZP_07854198.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus faecium TX0133A] gi|314994622|ref|ZP_07859882.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus faecium TX0133B] gi|314995568|ref|ZP_07860662.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus faecium TX0133a01] gi|68196004|gb|EAN10437.1| Phage integrase [Enterococcus faecium DO] gi|257813847|gb|EEV42605.1| phage integrase [Enterococcus faecium 1,230,933] gi|257826646|gb|EEV53272.1| phage integrase [Enterococcus faecium 1,231,410] gi|291605988|gb|EFF35418.1| site-specific recombinase, phage integrase family [Enterococcus faecium E1162] gi|313590156|gb|EFR69001.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus faecium TX0133a01] gi|313591027|gb|EFR69872.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus faecium TX0133B] gi|313596619|gb|EFR75464.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus faecium TX0133A] gi|313597495|gb|EFR76340.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus faecium TX0133C] gi|313642532|gb|EFS07112.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus faecium TX0133a04] Length = 381 Score = 37.0 bits (84), Expect = 4.6, Method: Compositional matrix adjust. Identities = 31/118 (26%), Positives = 54/118 (45%), Gaps = 10/118 (8%) Query: 102 IIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV 161 I+ K G+ ++T K + V S T ++ + +F +A+ + NP +V Sbjct: 99 ILPKYGNLRVNEVTVKKAQQIVNSWAETTDQYKVLHSTSKRIFSYAINLGIIETNPLDNV 158 Query: 162 ERPKRKT----EGIRPWTKEDM-QQFKSFWSEGSQPRLAFE-----FLLYSGLRCSDS 209 PKR T E ++ ++KE + F S+ R F+ FL YSG+R S++ Sbjct: 159 LMPKRTTTKHKEKVKVYSKEQLITLFDYLNSKPETYRNDFDKTLLRFLFYSGVRISEA 216 >gi|323165681|gb|EFZ51467.1| integrase [Shigella sonnei 53G] Length = 356 Score = 37.0 bits (84), Expect = 4.7, Method: Compositional matrix adjust. Identities = 47/215 (21%), Positives = 82/215 (38%), Gaps = 11/215 (5%) Query: 25 FRKGHGRRIRLPYPHESTFIPAYMSALTGST--PKREYINSPRKKPTTLKWLISEYRKSA 82 F G RRI + + I A + +G P INS TL + Y K Sbjct: 35 FGLGRDRRIAI-----TEAIQANIELFSGHKHKPLTARINS--DNSVTLHSWLDRYEKIL 87 Query: 83 HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKHTPSSAIQFLTSM 140 + + I++ S I R D ITTK I + + + +SA +++ Sbjct: 88 ASRGIKQKTLINYMSKIKAIRRGLPDAPLEDITTKEIAAMLNGYIDEGKAASAKLIRSTL 147 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL 200 F+ A+ + ++ P + K + R E ++ +++ S RLA E + Sbjct: 148 SDAFREAIAEGHITTKPVAATRAAKSEVRRSRLTADEYLKIYQTAESSPCWLRLAMELAV 207 Query: 201 YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235 +G R D C + + ++ KTG I + Sbjct: 208 VTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAI 242 >gi|296100765|ref|YP_003610911.1| putative integrase [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295055224|gb|ADF59962.1| putative integrase [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 398 Score = 37.0 bits (84), Expect = 4.7, Method: Compositional matrix adjust. Identities = 64/291 (21%), Positives = 114/291 (39%), Gaps = 27/291 (9%) Query: 49 SALTGSTPKREYINSPRKKPTTLKWLISEY----RKSAH--WGSLAVNSRISFESYFDQI 102 S TG+ PK+E N ++ T L +++ KSA WG + Y D I Sbjct: 88 SLATGTDPKQEREN--KRMELTFDELFNQHYLPWAKSAKRSWGK-------DVQRYRDHI 138 Query: 103 IRKSGDFDYRKITTKHIRSGVESRKHTPSSAI--QFLTSMRVLFKWAVRQEYVAINPCLS 160 G IT I ++ + S+A + + ++ +F WA RQ +++P Sbjct: 139 RPAIGQRLLSDITPASILRLQQTLSTSLSAATCNRVIVLIKAVFTWAGRQSMTSVHPARV 198 Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA--FEFLLYSGLRCSDSCRAGVQHLQ 218 V+ + R +T++++++ + P A + LL +GLR + A +H+ Sbjct: 199 VQLLRENNARQRYFTEDEIRRIFLSADNDTSPVAARYVKLLLLTGLRRDELRLAKWEHVD 258 Query: 219 --NNIFSIKTQKTGTIITVELPDGFMKLLAMTPI--GKETFFINNDKQKMNATQFSIWFK 274 + K G V L M ++ P G FI KQ M + F+ Sbjct: 259 PVKRTLWLPETKNGYGRIVHLNSLAMDVIRTLPTQRGNPWLFIGK-KQGMPLSNPVKAFQ 317 Query: 275 AKATKAGV---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 +AG+ H R A + G T +++ A G ++ ++ Y Sbjct: 318 RIVRRAGIFDKEVCIHTCRHSVAALIVSYGGTLYDVQAQLGHRSSQSSQRY 368 >gi|258539251|ref|YP_003173750.1| phage-related integrase [Lactobacillus rhamnosus Lc 705] gi|257150927|emb|CAR89899.1| Phage-related integrase [Lactobacillus rhamnosus Lc 705] Length = 382 Score = 37.0 bits (84), Expect = 4.7, Method: Compositional matrix adjust. Identities = 29/126 (23%), Positives = 53/126 (42%), Gaps = 5/126 (3%) Query: 98 YFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI-QFLTSMRVLFKWAVRQEYVAIN 156 + + +I G I T I+S V + T + A + ++ + +AV+ +Y+ N Sbjct: 96 FHNHLIPMFGSKTLTAIKTGSIQSAVSQWRETTTKAYKERFIYLKKILSFAVKMQYIEKN 155 Query: 157 PCLSVERPKRKTEGIRP--WTKEDMQQFKSFWSEGSQPRLAFEFLLY--SGLRCSDSCRA 212 P VE P+ G P W + + +F + + P FLL +G+R + C Sbjct: 156 PADGVELPRGVGSGKSPVYWDNKQVARFLTCIDPNNDPEKYTMFLLMVSTGIRREELCAL 215 Query: 213 GVQHLQ 218 V + Sbjct: 216 NVSDVN 221 >gi|226322740|ref|ZP_03798258.1| hypothetical protein COPCOM_00512 [Coprococcus comes ATCC 27758] gi|225208901|gb|EEG91255.1| hypothetical protein COPCOM_00512 [Coprococcus comes ATCC 27758] Length = 256 Score = 37.0 bits (84), Expect = 5.0, Method: Compositional matrix adjust. Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 1/74 (1%) Query: 138 TSMRVLFKWAVRQEYVAINPCLSVER-PKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF 196 M LF A +A NPC V+R K + ++ WT E+ +QF + GS+ + F Sbjct: 128 NQMTALFNHAKNIYNLADNPCDKVKRMGKTSKKKMKFWTIEEYRQFMTGIEPGSKYYVLF 187 Query: 197 EFLLYSGLRCSDSC 210 E L ++G R ++ Sbjct: 188 ELLFWTGAREGEAL 201 >gi|294789571|ref|ZP_06754806.1| site-specific recombinase, phage integrase family [Simonsiella muelleri ATCC 29453] gi|294482508|gb|EFG30200.1| site-specific recombinase, phage integrase family [Simonsiella muelleri ATCC 29453] Length = 247 Score = 37.0 bits (84), Expect = 5.0, Method: Compositional matrix adjust. Identities = 37/170 (21%), Positives = 65/170 (38%), Gaps = 8/170 (4%) Query: 108 DFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAI---NPCLSVERP 164 D +IT +H+ + R PSSA + +F+ A + Y+ NP V+ Sbjct: 9 DAPLHEITPQHLNRFLAWRSSAPSSANVEIAFFSAIFEHAQKSGYIDFEKKNPVKGVK-- 66 Query: 165 KRKTEGIRPWTKEDMQQFKSFWSEGSQP-RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS 223 K K E + + + F + Q R + L +G R D C + + I + Sbjct: 67 KNKIEKRDNYINDKL--FDVVYEHADQQMRDLMDIALLTGQRPIDICSLHTSQISDGILN 124 Query: 224 IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWF 273 IK KT + E+ +++ F+N + +N + WF Sbjct: 125 IKQVKTSARLRFEISGSLKEIIDRIAPENGFLFLNKHGKPLNRQLITNWF 174 >gi|332093830|gb|EGI98884.1| integrase [Shigella boydii 5216-82] Length = 256 Score = 36.6 bits (83), Expect = 5.1, Method: Compositional matrix adjust. Identities = 28/130 (21%), Positives = 54/130 (41%), Gaps = 2/130 (1%) Query: 108 DFDYRKITTKHIRSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK 165 D ITTK I + + + +SA +++ F+ A+ + ++ NP + K Sbjct: 13 DAPLEDITTKEIAAMLNGYIDEGKAASAKLIRSTLSDAFREAIAEGHITTNPVAATRAAK 72 Query: 166 RKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK 225 + R E ++ +++ S RLA E + +G R D C + + ++ Sbjct: 73 SEVRRSRLTADEYLKIYQAAESSPCWLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYVE 132 Query: 226 TQKTGTIITV 235 KTG I + Sbjct: 133 QSKTGVKIAI 142 >gi|295085443|emb|CBK66966.1| tyrosine recombinase XerC subunit [Bacteroides xylanisolvens XB1A] Length = 293 Score = 36.6 bits (83), Expect = 5.2, Method: Compositional matrix adjust. Identities = 53/241 (21%), Positives = 94/241 (39%), Gaps = 29/241 (12%) Query: 107 GDFDYRKITTKHIRSGVES---RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER 163 G F+ ++ + IR + S + +T +S + L+S+R +K+ +RQ I+P ++ Sbjct: 40 GKFNPLEVEAELIREWIVSLMDKGYTSTSVNRKLSSLRTFYKYLLRQGETTIDPLRKIKG 99 Query: 164 PKRK---------TEGIRPWTKEDM-QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAG 213 PK K E R + D + FK G + RL E +G+R S+ Sbjct: 100 PKNKKPLPVFLKENEMNRLLDETDFGEGFK-----GCRDRLIIEMFYATGMRLSELIGLD 154 Query: 214 VQHLQNNIFSIK-TQKTGTIITVELPDGFMKLL--------AMTPIGKETFFINNDKQKM 264 + + + +K T K + D +L+ P E FFI + +++ Sbjct: 155 NKDVDFSASLLKVTGKRNKQRLIPFGDELQELMLEYISVRNETIPERSEAFFIRENGERL 214 Query: 265 NATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 K +K KS H +R AT + A + G +++ E Y Sbjct: 215 YKNLVYNLVKRNLSKVATLKKKSPHVLRHTFATTMLNNEAELGAVKELLGHESITTTEIY 274 Query: 323 T 323 T Sbjct: 275 T 275 >gi|295426297|ref|ZP_06818957.1| tyrosine recombinase XerD [Lactobacillus amylolyticus DSM 11664] gi|295064036|gb|EFG54984.1| tyrosine recombinase XerD [Lactobacillus amylolyticus DSM 11664] Length = 299 Score = 36.6 bits (83), Expect = 5.2, Method: Compositional matrix adjust. Identities = 39/203 (19%), Positives = 85/203 (41%), Gaps = 19/203 (9%) Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRLA 195 +R ++W RQ +NP + ++ PK++ T+++M + + + G + R Sbjct: 79 LRKFYQWLARQNIQKLNPMIEIDSPKKQRRLPVALTQDEMDRLLAAPNVEKKLGLRDRAL 138 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--------TIITVELPDGFMKLLAM 247 E + +G+R S+ ++ + ++ IK G + I ++ + K + Sbjct: 139 LEMMYATGMRVSEVINLQLEDVHPDLKLIKVFGKGSKERLVPVSNIALDWLAKYEKEVRE 198 Query: 248 TPI---GKETFFINNDKQKMNATQFSIW--FKAKATKAGVNKSA--HGVRKFSATISADA 300 + + G+ T F+ + + + T+ ++W K A +NK H +R AT + Sbjct: 199 SLVLKQGRNTEFVFLNNRGGSLTRQAVWQIIKHYCQLANINKDVTPHTLRHTFATHLLEN 258 Query: 301 GATAHELMATYGWKTVDQAETYT 323 GA + G + + YT Sbjct: 259 GADLRVVQEILGHSDISTTQIYT 281 >gi|71064633|ref|YP_263360.1| phage integrase [Psychrobacter arcticus 273-4] gi|71037618|gb|AAZ17926.1| probable phage integrase [Psychrobacter arcticus 273-4] Length = 312 Score = 36.6 bits (83), Expect = 5.2, Method: Compositional matrix adjust. Identities = 48/218 (22%), Positives = 78/218 (35%), Gaps = 20/218 (9%) Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF----KS 184 TP + + L+S+R + W + NPC ++ PK + + D+ S Sbjct: 80 TPRTQARMLSSLRQFYLWMIASNLREDNPCERIKSPKLGRPLPKDLAEADVDNLLAAPDS 139 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI----FSIKTQKTGTIITVE---- 236 + G + + E L GLR S+ ++ + N + K KT + E Sbjct: 140 STALGLRDKAMLEVLYACGLRVSELVNLSLEQVNLNSGWLQITGKGNKTRLVPLGEYASD 199 Query: 237 -----LPDGFMKLLAMTPIGK-ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHG 288 L G L+A G + F+ M F K A A ++K S H Sbjct: 200 ALEDYLTHGRGDLIAHLKAGNCQAVFLTAQGGYMTRQNFWYLLKKYAKVASIDKALSPHT 259 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 +R AT + GA + G + + YT A Sbjct: 260 LRHAFATHLLNHGADLRSVQLLLGHSNLSTTQIYTHVA 297 >gi|299530798|ref|ZP_07044213.1| tyrosine recombinase XerD [Comamonas testosteroni S44] gi|298721314|gb|EFI62256.1| tyrosine recombinase XerD [Comamonas testosteroni S44] Length = 318 Score = 36.6 bits (83), Expect = 5.4, Method: Compositional matrix adjust. Identities = 56/223 (25%), Positives = 90/223 (40%), Gaps = 23/223 (10%) Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINP---CLSVERPKRKTEGIRPWTKEDM 179 VE K T S+ + LT +R F WA+R++ +A +P L+ ++P R + + E + Sbjct: 85 VEGTKATSSN--RRLTVLRRYFHWALREKRIAADPTVRMLAAKQPPRMPKTLTQEQVEAL 142 Query: 180 QQFKSFWSE-GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL- 237 S G + R E + SGLR S+ GV+ + ++ S + TG L Sbjct: 143 LDAPDVDSPLGLRDRAMLELMYASGLRVSELV--GVRMHELDLRSGVLRVTGKGRKERLV 200 Query: 238 PDG---------FMKLLAMTPIG---KETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284 P G +++ +G E F+ M+ F + K A AG+N Sbjct: 201 PFGQEAQHWLERYLQQARAAILGGQQTEEVFVTQRGAGMSRVMFWVIVKKCAQIAGINSP 260 Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 S H +R AT + GA + G + YT A Sbjct: 261 LSPHTLRHAFATHLLNHGADLRVVQMLLGHADISTTTIYTHVA 303 >gi|258616770|ref|ZP_05714540.1| phage integrase family site specific recombinase [Enterococcus faecium DO] Length = 298 Score = 36.6 bits (83), Expect = 5.4, Method: Compositional matrix adjust. Identities = 31/119 (26%), Positives = 54/119 (45%), Gaps = 10/119 (8%) Query: 102 IIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV 161 I+ K G+ ++T K + V S T ++ + +F +A+ + NP +V Sbjct: 99 ILPKYGNLRVNEVTVKKAQQIVNSWAETTDQYKVLHSTSKRIFSYAINLGIIETNPLDNV 158 Query: 162 ERPKRKT----EGIRPWTKEDM-QQFKSFWSEGSQPRLAFE-----FLLYSGLRCSDSC 210 PKR T E ++ ++KE + F S+ R F+ FL YSG+R S++ Sbjct: 159 LMPKRTTTKHKEKVKVYSKEQLITLFDYLNSKPETYRNDFDKTLLRFLFYSGVRISEAL 217 >gi|291514360|emb|CBK63570.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301] Length = 368 Score = 36.6 bits (83), Expect = 5.5, Method: Compositional matrix adjust. Identities = 45/215 (20%), Positives = 86/215 (40%), Gaps = 15/215 (6%) Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 SS TS++++ A++ E V +P SV+ P+ T+E++++ Sbjct: 155 SSQHNIYTSLKIIIHQAIKDELVTSDPTKSVDPPRMVLPHKEHLTEEELKRLIQTPCPKE 214 Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHL-------QNNIFSIKTQKTGTIITVELPDGFMK 243 + +F F ++GLR SD VQ L NN I ++ T I +P Sbjct: 215 MVKRSFLFCCFTGLRISD-----VQKLIWKEVVTTNNETYINFRQKKTKIENYVPLS-EN 268 Query: 244 LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAG 301 +++ P +E ++ + K + +G++K + H R AT+ ++G Sbjct: 269 AISVLPSKRENTETDSVFDLPKESTIRKVLKKWVSDSGIDKHITFHCARHTCATLLLNSG 328 Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336 + + G + Y K D+ + NS Sbjct: 329 VDIYTVKEILGHTDIGTTMQYAKVVDKTKREAVNS 363 >gi|24112307|ref|NP_706817.1| putative integrase encoded by prophage CP-933K; partial [Shigella flexneri 2a str. 301] gi|30062420|ref|NP_836591.1| putative integrase encoded by prophage CP-933K; partial [Shigella flexneri 2a str. 2457T] gi|217326121|ref|ZP_03442205.1| phage integrase family protein [Escherichia coli O157:H7 str. TW14588] gi|254791924|ref|YP_003076761.1| integrase encoded by prophage CP-933K [Escherichia coli O157:H7 str. TW14359] gi|261224477|ref|ZP_05938758.1| integrase encoded by prophage CP-933K [Escherichia coli O157:H7 str. FRIK2000] gi|261254531|ref|ZP_05947064.1| integrase encoded by prophage CP-933K [Escherichia coli O157:H7 str. FRIK966] gi|24051165|gb|AAN42524.1| putative integrase encoded by prophage CP-933K; partial [Shigella flexneri 2a str. 301] gi|30040666|gb|AAP16397.1| putative integrase encoded by prophage CP-933K; partial [Shigella flexneri 2a str. 2457T] gi|217322342|gb|EEC30766.1| phage integrase family protein [Escherichia coli O157:H7 str. TW14588] gi|254591324|gb|ACT70685.1| integrase encoded by prophage CP-933K [Escherichia coli O157:H7 str. TW14359] gi|313648473|gb|EFS12916.1| integrase [Shigella flexneri 2a str. 2457T] gi|320193173|gb|EFW67813.1| Phage integrase [Escherichia coli O157:H7 str. EC1212] Length = 256 Score = 36.6 bits (83), Expect = 5.5, Method: Compositional matrix adjust. Identities = 28/130 (21%), Positives = 54/130 (41%), Gaps = 2/130 (1%) Query: 108 DFDYRKITTKHIRSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK 165 D ITTK I + + + +SA +++ F+ A+ + ++ NP + K Sbjct: 13 DAPLEDITTKEIAAMLNGYIDEGKAASAKLIRSTLSDAFREAIAEGHITTNPVAATRAAK 72 Query: 166 RKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK 225 + R E ++ +++ S RLA E + +G R D C + + ++ Sbjct: 73 SEVRRSRLTADEYLKIYQAAESSPCWLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYVE 132 Query: 226 TQKTGTIITV 235 KTG I + Sbjct: 133 QSKTGVKIAI 142 >gi|254426076|ref|ZP_05039793.1| Phage integrase, N-terminal SAM-like domain protein [Synechococcus sp. PCC 7335] gi|196188499|gb|EDX83464.1| Phage integrase, N-terminal SAM-like domain protein [Synechococcus sp. PCC 7335] Length = 326 Score = 36.6 bits (83), Expect = 5.5, Method: Compositional matrix adjust. Identities = 29/123 (23%), Positives = 53/123 (43%), Gaps = 10/123 (8%) Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS- 187 +P++ Q + S++ FKW ++Y++ NP L++E+ K + +P D + + + Sbjct: 91 SPATINQSINSLKSFFKWLTVKDYISRNPTLTIEQLK---DAPKPPKDLDEAEVDALFDG 147 Query: 188 -----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL-PDGF 241 E LA LL GLR + ++ + K G+ V L P+ Sbjct: 148 LNYRGESEVRDLAILQLLSHGLRAGEVSALNIEDYDGKRVHVLGAKWGSDGKVPLKPEAI 207 Query: 242 MKL 244 M L Sbjct: 208 MAL 210 >gi|187251859|ref|YP_001876341.1| integrase family protein [Elusimicrobium minutum Pei191] gi|186972019|gb|ACC99004.1| Integrase family protein [Elusimicrobium minutum Pei191] Length = 337 Score = 36.6 bits (83), Expect = 5.5, Method: Compositional matrix adjust. Identities = 28/109 (25%), Positives = 50/109 (45%), Gaps = 3/109 (2%) Query: 94 SFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQE 151 +F+ FD I+ + G ITT+ I+ + +PS+A + + R + A+ + Sbjct: 80 TFKYTFDIILSRFGHMKVADITTEDIQKFYNDTWERTSPSTANRHFSLFRAIINKALNLK 139 Query: 152 -YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFL 199 Y NPC+ V R + + +TKED++ +P +AF L Sbjct: 140 LYKGQNPCIGVVRQRDNPPRDKYFTKEDIKSLLVTAENRLKPIIAFAVL 188 >gi|317055405|ref|YP_004103872.1| integrase family protein [Ruminococcus albus 7] gi|315447674|gb|ADU21238.1| integrase family protein [Ruminococcus albus 7] Length = 396 Score = 36.6 bits (83), Expect = 5.6, Method: Compositional matrix adjust. Identities = 29/111 (26%), Positives = 49/111 (44%), Gaps = 12/111 (10%) Query: 107 GDFDYRKITTKHIRSGVES-----------RKHTPSSAIQFLTSMRVLFKWAVRQEYVAI 155 G KIT + I++ V S + P + L+ + +F +AV+ V Sbjct: 105 GHMRMDKITPRQIQAFVNSLSREGANERTGKPLAPKTIRHNLSFVSDVFSYAVKMGVVND 164 Query: 156 NPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS-EGSQPRLAFEFLLYSGLR 205 NPC V PK + +T E +Q+F + + E + R F +++SG R Sbjct: 165 NPCSKVTLPKNNQAEKKIYTPEQVQRFLTLLNDEPLKYRTFFNLMIFSGFR 215 >gi|237717383|ref|ZP_04547864.1| integrase [Bacteroides sp. D1] gi|229443366|gb|EEO49157.1| integrase [Bacteroides sp. D1] Length = 292 Score = 36.6 bits (83), Expect = 5.7, Method: Compositional matrix adjust. Identities = 53/241 (21%), Positives = 94/241 (39%), Gaps = 29/241 (12%) Query: 107 GDFDYRKITTKHIRSGVES---RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER 163 G F+ ++ + IR + S + +T +S + L+S+R +K+ +RQ I+P ++ Sbjct: 39 GKFNPLEVEAELIREWIVSLMDKGYTSTSVNRKLSSLRTFYKYLLRQGETTIDPLRKIKG 98 Query: 164 PKRK---------TEGIRPWTKEDM-QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAG 213 PK K E R + D + FK G + RL E +G+R S+ Sbjct: 99 PKNKKPLPVFLKENEMNRLLDETDFGEGFK-----GCRDRLIIEMFYATGMRLSELIGLD 153 Query: 214 VQHLQNNIFSIK-TQKTGTIITVELPDGFMKLL--------AMTPIGKETFFINNDKQKM 264 + + + +K T K + D +L+ P E FFI + +++ Sbjct: 154 NKDVDFSASLLKVTGKRNKQRLIPFGDELQELMLEYINVRNETIPERSEAFFIRENGERL 213 Query: 265 NATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 K +K KS H +R AT + A + G +++ E Y Sbjct: 214 YKNLVYNLVKRNLSKVATLKKKSPHVLRHTFATTMLNNEAELGAVKELLGHESITTTEIY 273 Query: 323 T 323 T Sbjct: 274 T 274 >gi|157370504|ref|YP_001478493.1| integrase family protein [Serratia proteamaculans 568] gi|157322268|gb|ABV41365.1| integrase family protein [Serratia proteamaculans 568] Length = 428 Score = 36.6 bits (83), Expect = 5.7, Method: Compositional matrix adjust. Identities = 41/179 (22%), Positives = 74/179 (41%), Gaps = 21/179 (11%) Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA 195 ++ MR +F +AV Y+A NP V K++ P TKE+ Q+ Q R Sbjct: 164 YMFCMRAIFDFAVSNGYIANNPFEGVSPLKKQRPAPDPLTKEEYQRV-IVSCPTQQMRNM 222 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI---ITVELPDGFMKLLAMTPIGK 252 + +GLR + + L ++I + ++ T+ D M+ + +T + Sbjct: 223 ITLAINTGLRHGELYALAWEDLDTQNWTISISRNLSLKEHFTLPKTDAGMRTIQLTTVAI 282 Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRK-------FSATISADAGATA 304 E K +M T+ S A + VN +G ++ FS I++ G++A Sbjct: 283 EAI-----KSQMALTRLS-----NAHRVTVNLREYGKKRTDDCTFIFSPRITSRNGSSA 331 >gi|262406148|ref|ZP_06082698.1| tyrosine recombinase XerC [Bacteroides sp. 2_1_22] gi|294644043|ref|ZP_06721820.1| tyrosine recombinase XerC [Bacteroides ovatus SD CC 2a] gi|294810195|ref|ZP_06768862.1| tyrosine recombinase XerC [Bacteroides xylanisolvens SD CC 1b] gi|298483048|ref|ZP_07001229.1| tyrosine recombinase XerC [Bacteroides sp. D22] gi|262357023|gb|EEZ06113.1| tyrosine recombinase XerC [Bacteroides sp. 2_1_22] gi|292640567|gb|EFF58808.1| tyrosine recombinase XerC [Bacteroides ovatus SD CC 2a] gi|294442607|gb|EFG11407.1| tyrosine recombinase XerC [Bacteroides xylanisolvens SD CC 1b] gi|298270792|gb|EFI12372.1| tyrosine recombinase XerC [Bacteroides sp. D22] Length = 293 Score = 36.6 bits (83), Expect = 5.8, Method: Compositional matrix adjust. Identities = 53/241 (21%), Positives = 94/241 (39%), Gaps = 29/241 (12%) Query: 107 GDFDYRKITTKHIRSGVES---RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER 163 G F+ ++ + IR + S + +T +S + L+S+R +K+ +RQ I+P ++ Sbjct: 40 GKFNPLEVEAELIREWIVSLMDKGYTSTSVNRKLSSLRTFYKYLLRQGETTIDPLRKIKG 99 Query: 164 PKRK---------TEGIRPWTKEDM-QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAG 213 PK K E R + D + FK G + RL E +G+R S+ Sbjct: 100 PKNKKPLPVFLKENEMNRLLDETDFGEGFK-----GCRDRLIIEMFYATGMRLSELIGLD 154 Query: 214 VQHLQNNIFSIK-TQKTGTIITVELPDGFMKLL--------AMTPIGKETFFINNDKQKM 264 + + + +K T K + D +L+ P E FFI + +++ Sbjct: 155 NKDVDFSASLLKVTGKRNKQRLIPFGDELQELMLEYINVRNETIPERSEAFFIRENGERL 214 Query: 265 NATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 K +K KS H +R AT + A + G +++ E Y Sbjct: 215 YKNLVYNLVKRNLSKVATLKKKSPHVLRHTFATTMLNNEAELGAVKELLGHESITTTEIY 274 Query: 323 T 323 T Sbjct: 275 T 275 >gi|260559718|ref|ZP_05831898.1| phage integrase [Enterococcus faecium C68] gi|260074386|gb|EEW62708.1| phage integrase [Enterococcus faecium C68] Length = 244 Score = 36.6 bits (83), Expect = 5.9, Method: Compositional matrix adjust. Identities = 31/119 (26%), Positives = 54/119 (45%), Gaps = 10/119 (8%) Query: 102 IIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV 161 I+ K G+ ++T K + V S T ++ + +F +A+ + NP +V Sbjct: 99 ILPKYGNLRVNEVTVKKAQQIVNSWAETTDQYKVLHSTSKRIFSYAINLGIIETNPLDNV 158 Query: 162 ERPKRKT----EGIRPWTKEDM-QQFKSFWSEGSQPRLAFE-----FLLYSGLRCSDSC 210 PKR T E ++ ++KE + F S+ R F+ FL YSG+R S++ Sbjct: 159 LMPKRTTTKHKEKVKVYSKEQLITLFDYLNSKPETYRNDFDKTLLRFLFYSGVRISEAL 217 >gi|218699138|ref|YP_002406767.1| phage integrase [Escherichia coli IAI39] gi|218369124|emb|CAR16878.1| phage integrase [Escherichia coli IAI39] Length = 256 Score = 36.6 bits (83), Expect = 5.9, Method: Compositional matrix adjust. Identities = 31/141 (21%), Positives = 57/141 (40%), Gaps = 2/141 (1%) Query: 97 SYFDQIIRKSGDFDYRKITTKHIRSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQEYVA 154 S I R D ITTK I + + + +SA +++ F+ A+ + ++ Sbjct: 2 SKIKAIRRGLTDAPLEDITTKEIAAMLNGYIDEGKAASAKLIRSTLSDAFREAIAEGHIT 61 Query: 155 INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGV 214 NP + K + R E ++ +++ S RLA E + +G R D C Sbjct: 62 TNPVAATRAAKSEVRRSRLTADEYLKIYQAAESSPCWLRLAMELAVVTGQRVGDLCEMKW 121 Query: 215 QHLQNNIFSIKTQKTGTIITV 235 + + ++ KTG I + Sbjct: 122 SDIVDGYLYVEQSKTGVKIAI 142 >gi|193069614|ref|ZP_03050567.1| integrase [Escherichia coli E110019] gi|192957161|gb|EDV87611.1| integrase [Escherichia coli E110019] Length = 256 Score = 36.6 bits (83), Expect = 6.0, Method: Compositional matrix adjust. Identities = 42/210 (20%), Positives = 82/210 (39%), Gaps = 26/210 (12%) Query: 108 DFDYRKITTKHIRSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK 165 D ITTK I + + + +SA +++ F+ A+ + ++ NP + K Sbjct: 13 DAPLEDITTKKIAAMLNGYIDEGKAASAKLIRSTLSDAFREAIAEGHITTNPVAATRAAK 72 Query: 166 RKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK 225 + R E ++ +++ S RLA E + +G R D C + + ++ Sbjct: 73 SEVRRSRLTADEYLKIYQAAESSPCWLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYVE 132 Query: 226 TQKTGTIITV--------------ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI 271 KTG I + E D K+L G ET + ++ +++ S Sbjct: 133 QSKTGVKIAIPTTLHVDALGISMKETLDKCKKIL-----GGETIIASTRREPLSSGTVSR 187 Query: 272 WFKAKATKAGVN-----KSAHGVRKFSATI 296 +F +G++ + H +R SA + Sbjct: 188 YFMRARKASGLSFEGDPPTFHELRSLSARL 217 >gi|77410914|ref|ZP_00787270.1| site-specific recombinase, phage integrase family [Streptococcus agalactiae CJB111] gi|77162969|gb|EAO73924.1| site-specific recombinase, phage integrase family [Streptococcus agalactiae CJB111] Length = 384 Score = 36.6 bits (83), Expect = 6.0, Method: Compositional matrix adjust. Identities = 27/108 (25%), Positives = 49/108 (45%), Gaps = 3/108 (2%) Query: 101 QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160 I+ GD KI+ ++ + + T + Q + +F +A++ + + NP Sbjct: 100 HILPVMGDLPISKISPLDCQNFITEKAKTFKNIKQIKSYTGKIFDFAIKMKLLKHNPMAE 159 Query: 161 VERPKRKTEGIRP-WTKEDMQQFKS--FWSEGSQPRLAFEFLLYSGLR 205 + PKRK I WT +++++F + E + F L YSGLR Sbjct: 160 IIMPKRKKTQIENYWTVQELKEFLAIVLQEEPYKHYALFRLLAYSGLR 207 >gi|265753988|ref|ZP_06089343.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] gi|263235702|gb|EEZ21226.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] Length = 390 Score = 36.6 bits (83), Expect = 6.1, Method: Compositional matrix adjust. Identities = 52/218 (23%), Positives = 87/218 (39%), Gaps = 17/218 (7%) Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR--KTEGIRPW-TKEDM 179 +E R + ++A ++L AVRQ + NP ++ +R +G + + T E++ Sbjct: 164 IEPRPISQNTASRYLGMFSTTLNNAVRQGIIRNNPMKELDAKERIQPKDGKKEYLTIEEL 223 Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL------QNNIFSIKTQKTGTII 233 + + S + + AF F ++GLR SD + H+ + ++ QKT + Sbjct: 224 KALMATDSYRPEVKQAFIFACFTGLRLSDMYKLAPIHIFKTPDGKGEYIDMEMQKTEKPV 283 Query: 234 TVELPDGFMKLLAMTPIGKET-FFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290 + L + + L P G T FF Q + W +A AGV K S H R Sbjct: 284 IIPLSEEAKRWLP-KPKGITTPFFDIPTTQTVIGRALRKWAEA----AGVEKHISFHCSR 338 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 T+ GA G + E Y K D+ Sbjct: 339 HTFGTMMLTLGADLFTTSKLMGHTNIQTTEIYAKIVDK 376 >gi|221068555|ref|ZP_03544660.1| tyrosine recombinase XerD [Comamonas testosteroni KF-1] gi|220713578|gb|EED68946.1| tyrosine recombinase XerD [Comamonas testosteroni KF-1] Length = 318 Score = 36.6 bits (83), Expect = 6.1, Method: Compositional matrix adjust. Identities = 54/223 (24%), Positives = 90/223 (40%), Gaps = 23/223 (10%) Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 VE K T S+ + LT +R F WA+R++ +A +P + + K+ + T+E ++ Sbjct: 85 VEGTKATSSN--RRLTVLRRYFHWALREKRIAADPTVRMLAAKQPPRTPKTLTQEQVEAL 142 Query: 183 KSF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL- 237 + G + R E + SGLR S+ GV+ + ++ S + TG L Sbjct: 143 LDAPDVETALGLRDRAMLELMYASGLRVSELV--GVRMHELDLRSGVLRVTGKGRKERLV 200 Query: 238 PDG---------FMKLLAMTPIG---KETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284 P G +++ +G E F+ M+ F + K A AG+N Sbjct: 201 PFGQEAQHWLERYLQQARAAILGGQQTEEVFVTQRGAGMSRVMFWVIVKKCAQIAGINSP 260 Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 S H +R AT + GA + G + YT A Sbjct: 261 LSPHTLRHAFATHLLNHGADLRVVQMLLGHADISTTTIYTHVA 303 >gi|301066065|ref|YP_003788088.1| site-specific recombinase, prophage lsa1 integrase [Lactobacillus casei str. Zhang] gi|300438472|gb|ADK18238.1| Site-specific recombinase, prophage lsa1 integrase [Lactobacillus casei str. Zhang] Length = 382 Score = 36.6 bits (83), Expect = 6.2, Method: Compositional matrix adjust. Identities = 33/139 (23%), Positives = 59/139 (42%), Gaps = 8/139 (5%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI-QFLTSMRVL 143 GS A ++ F ++ +I G I T I+S V + T + A + ++ + Sbjct: 86 GSTAYKTKQLFNNH---LIPMFGSKTLTAIKTGSIQSAVSQWRETTTKAYKERFIYLKKI 142 Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRP--WTKEDMQQFKSFWSEGSQPRLAFEFLLY 201 +AV+ +Y+ NP VE P+ G P W + + +F + + P FLL Sbjct: 143 LSFAVKMQYIEKNPADGVELPRGVRSGKSPVYWDNKQVARFLTCIDPNNDPEKYTMFLLM 202 Query: 202 --SGLRCSDSCRAGVQHLQ 218 +G+R + C V + Sbjct: 203 VSTGIRREELCALNVSDVN 221 >gi|311110137|ref|ZP_07711534.1| site-specific recombinase, phage integrase family [Lactobacillus gasseri MV-22] gi|311065291|gb|EFQ45631.1| site-specific recombinase, phage integrase family [Lactobacillus gasseri MV-22] Length = 390 Score = 36.6 bits (83), Expect = 6.2, Method: Compositional matrix adjust. Identities = 40/182 (21%), Positives = 85/182 (46%), Gaps = 25/182 (13%) Query: 58 REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKI--- 114 +E +N KP T+ LI + + + LA+ +R S+ S D I S DF + + Sbjct: 58 QEKLNIQSIKPITMDKLIDKLKNNLDKQGLAIKTRNSYFSTLDII---SKDFKDKLVASV 114 Query: 115 -TTK---HIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV------ERP 164 TT+ ++ + RK + + +L ++ +F++A++ Y+ +P L + ER Sbjct: 115 NTTELNVYLNDLLYERKLSNGTIKIYLLQLKKIFEYAIQFGYIKKDPTLKIKINYKNERA 174 Query: 165 KRKTEGIRPW--TKEDMQQFKSFWSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQNN 220 K+++ + W T +++ ++ + F++L +G+R ++ L NN Sbjct: 175 KKQSR-VENWYLTDDELNTVLTYCLHKKREDYYHLFKWLYLTGMRVGEATAL----LINN 229 Query: 221 IF 222 +F Sbjct: 230 VF 231 >gi|330685662|gb|EGG97303.1| tyrosine recombinase XerC [Staphylococcus epidermidis VCU121] Length = 297 Score = 36.6 bits (83), Expect = 6.3, Method: Compositional matrix adjust. Identities = 27/143 (18%), Positives = 68/143 (47%), Gaps = 6/143 (4%) Query: 93 ISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEY 152 + F + Q DF+Y+ ++ S + S+ ++ + ++++R +++ + Q+ Sbjct: 31 VQFNDFLYQESLDLNDFEYKD--ARNYLSFLYSKNLKRTTVSRKISTLRTFYEYWMTQDE 88 Query: 153 VAINPCLSVERPKRKTEGIRPWTKEDMQQ-FKSFWSE---GSQPRLAFEFLLYSGLRCSD 208 +NP + + PK++ + + +E+M+ FK+ ++ G + ++ E L +G+R S+ Sbjct: 89 SVVNPFVQLVHPKKEQYLPQFFYEEEMEALFKTVETDSKKGMRDKVILELLYATGIRVSE 148 Query: 209 SCRAGVQHLQNNIFSIKTQKTGT 231 Q L + +K G Sbjct: 149 LVHIKTQDLDMKLPGVKVLGKGN 171 >gi|71042119|pdb|1Z19|A Chain A, Crystal Structure Of A Lambda Integrase(75-356) Dimer Bound To A Coc' Core Site gi|71042120|pdb|1Z19|B Chain B, Crystal Structure Of A Lambda Integrase(75-356) Dimer Bound To A Coc' Core Site Length = 283 Score = 36.6 bits (83), Expect = 6.3, Method: Compositional matrix adjust. Identities = 32/145 (22%), Positives = 59/145 (40%), Gaps = 2/145 (1%) Query: 93 ISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQ 150 I++ S I R D ITTK I + + + +SA +++ F+ A+ + Sbjct: 25 INYXSKIKAIRRGLPDAPLEDITTKEIAAXLNGYIDEGKAASAKLIRSTLSDAFREAIAE 84 Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSC 210 ++ N + K K R E ++ +++ S RLA E + +G R D C Sbjct: 85 GHITTNHVAATRAAKSKVRRSRLTADEYLKIYQAAESSPCWLRLAXELAVVTGQRVGDLC 144 Query: 211 RAGVQHLQNNIFSIKTQKTGTIITV 235 + + ++ KTG I + Sbjct: 145 EXKWSDIVDGYLYVEQSKTGVKIAI 169 >gi|326566337|gb|EGE16487.1| phage integrase [Moraxella catarrhalis BC1] Length = 397 Score = 36.6 bits (83), Expect = 6.3, Method: Compositional matrix adjust. Identities = 67/245 (27%), Positives = 101/245 (41%), Gaps = 42/245 (17%) Query: 19 GKIIYYFR---KGHGRRIRL-PYPHEST------FIPAYMSALTGSTPKRE-------YI 61 GKI++ R G +R L YP S + A L G PK E YI Sbjct: 35 GKIVFQLRYRFNGKLKRFDLGVYPLISLKQAREKSLSAKTQLLHGKDPKLEEQIAKQAYI 94 Query: 62 NSPRKKPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTK-HI 119 N+ L+W Y KSA A + + SFE Y +I G IT + +I Sbjct: 95 NADTFYECFLQW----YDKSAVITKKQASDIKRSFELYVFPVI---GSLPINDITLQQYI 147 Query: 120 RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE-------RPKRKTEGIR 172 + TP A + LT+ + + KWA ++E V N +E R KRK R Sbjct: 148 IIIESISEKTPGIAERILTNTKQMLKWAKKREIVTHNILADLELSDFNLVRVKRK----R 203 Query: 173 PWTKEDMQQF-KSFWSE--GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI--KTQ 227 + +++ F K+ + + RLA E L G R + RA + Q+ ++++ + Sbjct: 204 YLSDDEIILFYKALYGSKISYRNRLATELALMFGCRGIELRRAKITDFQDGVWTVPPENH 263 Query: 228 KTGTI 232 K G I Sbjct: 264 KVGHI 268 >gi|289435303|ref|YP_003465175.1| integrase/recombinase XerD [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289171547|emb|CBH28093.1| integrase/recombinase XerD [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 297 Score = 36.6 bits (83), Expect = 6.5, Method: Compositional matrix adjust. Identities = 45/213 (21%), Positives = 86/213 (40%), Gaps = 24/213 (11%) Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191 S +++ S+R F + + ++ +P + +E PK+ + +D++ S S+ S Sbjct: 70 SVARYIASLRSFFHYLMHDGKMSHDPMIQIETPKQAQGLPKVLNLDDVELLLS-SSDTST 128 Query: 192 P-----RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-------------TII 233 P + E L +GLR ++ + + L + I+T G T++ Sbjct: 129 PLGLRDQAMMEILYATGLRVTELVQLKMDDLHLQMGFIQTIGKGDKERIIPLGKTATTVL 188 Query: 234 TVELPDGFMKLLAMTPIGKETF-FINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290 L + KL P + F F+N+ Q + F K A ++G+ K + H +R Sbjct: 189 EQYLEEARPKL--RRPKYRNDFVFLNHHGQGLTRQGFWKILKGIAKESGIEKPITPHTLR 246 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYT 323 AT + GA + G + + YT Sbjct: 247 HSFATHLLENGADLRSVQELLGHADISTTQIYT 279 >gi|309807082|ref|ZP_07701061.1| tyrosine recombinase XerD [Lactobacillus iners LactinV 03V1-b] gi|309809309|ref|ZP_07703178.1| tyrosine recombinase XerD [Lactobacillus iners SPIN 2503V10-D] gi|325911997|ref|ZP_08174399.1| tyrosine recombinase XerD [Lactobacillus iners UPII 143-D] gi|325912838|ref|ZP_08175216.1| tyrosine recombinase XerD [Lactobacillus iners UPII 60-B] gi|329921320|ref|ZP_08277758.1| tyrosine recombinase XerD [Lactobacillus iners SPIN 1401G] gi|308166512|gb|EFO68712.1| tyrosine recombinase XerD [Lactobacillus iners LactinV 03V1-b] gi|308170422|gb|EFO72446.1| tyrosine recombinase XerD [Lactobacillus iners SPIN 2503V10-D] gi|325476182|gb|EGC79346.1| tyrosine recombinase XerD [Lactobacillus iners UPII 143-D] gi|325477831|gb|EGC80965.1| tyrosine recombinase XerD [Lactobacillus iners UPII 60-B] gi|328934612|gb|EGG31116.1| tyrosine recombinase XerD [Lactobacillus iners SPIN 1401G] Length = 296 Score = 36.6 bits (83), Expect = 6.6, Method: Compositional matrix adjust. Identities = 44/214 (20%), Positives = 86/214 (40%), Gaps = 23/214 (10%) Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----W 186 +S + L+S+R ++W RQ + +P L ++ PK++ + ++ + + Sbjct: 67 ASISRMLSSLRKFYQWLFRQNLIKQDPLLRIDSPKKEKRLPTALSTTEVTKLINMPDTTT 126 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT----IITVELPDGFM 242 G + R E L +G+R S+ + + IK G+ I + ++ Sbjct: 127 DLGIRDRAILETLYATGMRVSEVINLNEDSIHEELHLIKVFGKGSKQRLIPISNVAMSWI 186 Query: 243 KLLAMTPIGK---------ETFFINNDKQKMNATQFSIW--FKAKATKAGVNKSA--HGV 289 K +T K + F+N+ K+ T+ ++W K AG+NK+ H + Sbjct: 187 KKYQITVRNKTLLESGKFEKAIFLNSRGGKI--TRQAVWQMIKRYCQLAGINKNVTPHTL 244 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYT 323 R AT + GA + G + + YT Sbjct: 245 RHTFATHLLENGADLRIVQEILGHSDISTTQIYT 278 >gi|189423412|ref|YP_001950589.1| tyrosine recombinase XerC [Geobacter lovleyi SZ] gi|254799343|sp|B3E1H7|XERC_GEOLS RecName: Full=Tyrosine recombinase xerC gi|189419671|gb|ACD94069.1| tyrosine recombinase XerC [Geobacter lovleyi SZ] Length = 317 Score = 36.2 bits (82), Expect = 6.6, Method: Compositional matrix adjust. Identities = 50/212 (23%), Positives = 77/212 (36%), Gaps = 21/212 (9%) Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG----SQP 192 L ++R F W VR + +NP + PKR+ P+ Q + G QP Sbjct: 86 LAAVRAFFGWLVRTRQLEVNPAELIATPKREQR--LPFHLNIDQTVTLIEAPGHTGQEQP 143 Query: 193 RLA-----FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-KTGTIITVELPDGFMKLLA 246 A E L SGLR S+ V L ++ Q K G V + ++ L Sbjct: 144 TFARDTAILELLYSSGLRVSELTGLAVADLDRAAGMVRVQGKGGKERIVPVGSAALEALE 203 Query: 247 MTPIGK------ETFFINNDKQKMNATQFSIWFK--AKATKAGVNKSAHGVRKFSATISA 298 G+ F+ ++N + K A A + S H +R AT Sbjct: 204 QYLAGRGQLADDAPLFLGCRGARINRRTVAQLVKRWASGIPAFRSISPHTLRHTFATHML 263 Query: 299 DAGATAHELMATYGWKTVDQAETYTK-GADRI 329 + GA + G ++ + YT G DR+ Sbjct: 264 EGGADLRSIQELLGHSSLSTTQKYTHVGLDRL 295 >gi|326561998|gb|EGE12328.1| phage integrase [Moraxella catarrhalis 103P14B1] gi|326574492|gb|EGE24434.1| phage integrase [Moraxella catarrhalis 101P30B1] gi|326575920|gb|EGE25843.1| phage integrase [Moraxella catarrhalis CO72] Length = 397 Score = 36.2 bits (82), Expect = 6.7, Method: Compositional matrix adjust. Identities = 67/245 (27%), Positives = 101/245 (41%), Gaps = 42/245 (17%) Query: 19 GKIIYYFR---KGHGRRIRL-PYPHEST------FIPAYMSALTGSTPKRE-------YI 61 GKI++ R G +R L YP S + A L G PK E YI Sbjct: 35 GKIVFQLRYRFNGKLKRFDLGVYPLISLKQAREKSLSAKTQLLHGKDPKLEEQIAKQAYI 94 Query: 62 NSPRKKPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTK-HI 119 N+ L+W Y KSA A + + SFE Y +I G IT + +I Sbjct: 95 NADTFYECFLQW----YDKSAVITKKQASDIKRSFELYVFPVI---GSLPINDITLQQYI 147 Query: 120 RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE-------RPKRKTEGIR 172 + TP A + LT+ + + KWA ++E V N +E R KRK R Sbjct: 148 IIIESISEKTPGIAERILTNTKQMLKWAKKREIVTHNILADLELSDFNLVRVKRK----R 203 Query: 173 PWTKEDMQQF-KSFWSE--GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI--KTQ 227 + +++ F K+ + + RLA E L G R + RA + Q+ ++++ + Sbjct: 204 YLSDDEIILFYKALYGSKISYRNRLATELALMFGCRGIELRRAKITDFQDGVWTVPPENH 263 Query: 228 KTGTI 232 K G I Sbjct: 264 KVGHI 268 >gi|315653500|ref|ZP_07906421.1| integrase/recombinase XerD [Lactobacillus iners ATCC 55195] gi|315489191|gb|EFU78832.1| integrase/recombinase XerD [Lactobacillus iners ATCC 55195] Length = 297 Score = 36.2 bits (82), Expect = 6.8, Method: Compositional matrix adjust. Identities = 44/214 (20%), Positives = 86/214 (40%), Gaps = 23/214 (10%) Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----W 186 +S + L+S+R ++W RQ + +P L ++ PK++ + ++ + + Sbjct: 68 ASISRMLSSLRKFYQWLFRQNLIKQDPLLRIDSPKKEKRLPTALSTTEVTKLINMPDTTT 127 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT----IITVELPDGFM 242 G + R E L +G+R S+ + + IK G+ I + ++ Sbjct: 128 DLGIRDRAILETLYATGMRVSEVINLNEDSIHEELHLIKVFGKGSKQRLIPISNVAMSWI 187 Query: 243 KLLAMTPIGK---------ETFFINNDKQKMNATQFSIW--FKAKATKAGVNKSA--HGV 289 K +T K + F+N+ K+ T+ ++W K AG+NK+ H + Sbjct: 188 KKYQITVRNKTLLESGKFEKAIFLNSRGGKI--TRQAVWQMIKRYCQLAGINKNVTPHTL 245 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYT 323 R AT + GA + G + + YT Sbjct: 246 RHTFATHLLENGADLRIVQEILGHSDISTTQIYT 279 >gi|241667835|ref|ZP_04755413.1| site-specific recombinase [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254876378|ref|ZP_05249088.1| site-specific recombinase [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254842399|gb|EET20813.1| site-specific recombinase [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 292 Score = 36.2 bits (82), Expect = 6.8, Method: Compositional matrix adjust. Identities = 53/249 (21%), Positives = 97/249 (38%), Gaps = 27/249 (10%) Query: 95 FESYFDQIIRKSGDFD--YRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEY 152 +SYF Q+ + DF+ Y I+ + ++G SR S + ++++R + W + Sbjct: 33 LQSYFSQVELINLDFEQLYAFISYRS-KNGYSSR-----SNARMISTLRKFYNWLISTGQ 86 Query: 153 VAINPCLSVERPKRKTEGIRPWTKEDMQ---QFKSFWSE-GSQPRLAFEFLLYSGLRCSD 208 NP + PK + T+ D++ Q + G + + E + +GLR S+ Sbjct: 87 ATTNPTTKLTLPKLAKRLPKDMTEVDVERLLQAPDLTDDIGIRDKAMLELMYATGLRVSE 146 Query: 209 SCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET------------FF 256 + N+ I+ G+ + +P G L + +E+ F Sbjct: 147 LVGLNTNDIDLNVGVIQVMGKGSKERI-VPIGEYALEYLHKYFEESRESLAKNFKEKAVF 205 Query: 257 INNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWK 314 I+ +++ F K+ A AG+N S H +R AT + GA + G Sbjct: 206 ISKHSKRITRQSFWHRIKSYALIAGINTDISPHTLRHAFATHLLNHGADLRSVQLLLGHS 265 Query: 315 TVDQAETYT 323 V YT Sbjct: 266 NVSTTTIYT 274 >gi|91791328|ref|YP_552278.1| phage integrase [Polaromonas sp. JS666] gi|91701209|gb|ABE47380.1| phage integrase [Polaromonas sp. JS666] Length = 557 Score = 36.2 bits (82), Expect = 6.8, Method: Compositional matrix adjust. Identities = 26/108 (24%), Positives = 43/108 (39%), Gaps = 24/108 (22%) Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF------ 185 SA L+ + +F+W + Q YV NP + K G++P + + F Sbjct: 304 SAAHGLSVLSAMFRWLIEQRYVLANPFSGI-----KVRGVQPAGMDTSRSFSDAEWALLR 358 Query: 186 -------WSEGSQP------RLAFEFLLYSGLRCSDSCRAGVQHLQNN 220 WS G QP R +F +GLR S+ A + ++ + Sbjct: 359 TVADGLEWSYGWQPAAAQRLRFVLDFAYATGLRASELVHATLGAIEVD 406 >gi|302191354|ref|ZP_07267608.1| tyrosine recombinase XerD [Lactobacillus iners AB-1] gi|312871387|ref|ZP_07731482.1| tyrosine recombinase XerD [Lactobacillus iners LEAF 3008A-a] gi|311093040|gb|EFQ51389.1| tyrosine recombinase XerD [Lactobacillus iners LEAF 3008A-a] Length = 296 Score = 36.2 bits (82), Expect = 6.8, Method: Compositional matrix adjust. Identities = 44/214 (20%), Positives = 86/214 (40%), Gaps = 23/214 (10%) Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----W 186 +S + L+S+R ++W RQ + +P L ++ PK++ + ++ + + Sbjct: 67 ASISRMLSSLRKFYQWLFRQNLIKQDPLLRIDSPKKEKRLPTAMSTTEVTKLINMPDTTT 126 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT----IITVELPDGFM 242 G + R E L +G+R S+ + + IK G+ I + ++ Sbjct: 127 DLGIRDRAILETLYATGMRVSEVINLNEDSIHEELHLIKVFGKGSKQRLIPISNVAMSWI 186 Query: 243 KLLAMTPIGK---------ETFFINNDKQKMNATQFSIW--FKAKATKAGVNKSA--HGV 289 K +T K + F+N+ K+ T+ ++W K AG+NK+ H + Sbjct: 187 KKYQITVRNKTLLESGKFEKAIFLNSRGGKI--TRQAVWQMIKRYCQLAGINKNVTPHTL 244 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYT 323 R AT + GA + G + + YT Sbjct: 245 RHTFATHLLENGADLRIVQEILGHSDISTTQIYT 278 >gi|253566956|ref|ZP_04844408.1| integrase [Bacteroides sp. 3_2_5] gi|251944519|gb|EES85008.1| integrase [Bacteroides sp. 3_2_5] Length = 392 Score = 36.2 bits (82), Expect = 6.8, Method: Compositional matrix adjust. Identities = 43/183 (23%), Positives = 71/183 (38%), Gaps = 14/183 (7%) Query: 147 AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRC 206 A R + NPC +ER + + E++ + E + AF F +GLR Sbjct: 195 AHRDRKIKENPCPYLERVQTIPSDKVGLSAEELARVAETPCEIPVLKTAFLFSCLTGLRK 254 Query: 207 SDSCRAGVQHLQNNI-----FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK 261 SD + +Q + + QKT II + + ++L+ + +E K Sbjct: 255 SDVKTFSWEMIQPEADGTLYITTRMQKTKQIIYNPIGEEALQLIDGS---REGLVFPGFK 311 Query: 262 QKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319 M F W KA AG+ K + HG R ++ DAG + + G K + Sbjct: 312 DSMTQAPFKKWIKA----AGITKKLTFHGARHTFCSLQLDAGTDSRTVQELVGHKNLATT 367 Query: 320 ETY 322 + Y Sbjct: 368 QRY 370 >gi|194016964|ref|ZP_03055577.1| tyrosine recombinase XerD [Bacillus pumilus ATCC 7061] gi|194011570|gb|EDW21139.1| tyrosine recombinase XerD [Bacillus pumilus ATCC 7061] Length = 296 Score = 36.2 bits (82), Expect = 6.8, Method: Compositional matrix adjust. Identities = 48/263 (18%), Positives = 111/263 (42%), Gaps = 28/263 (10%) Query: 87 LAVNSRISF----ESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH---TPSSAIQFLTS 139 L+ N+ +S+ ++Y ++ D + +T HI ++ K + ++++ L+S Sbjct: 18 LSENTIVSYKRDLQNYLSFLMTHEQLTDIKDVTRLHIIHYLKKLKEEGKSSKTSVRHLSS 77 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLA 195 +R ++ +R++ +P ++E K + + + + ++++ ++ + + + Sbjct: 78 IRSFHQFLLREKVTTDDPSWNIETQKTERKLPKVLSLGEVEKLLDTPNQHTPFDYRDKAM 137 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-------------QKTGTIITVELPDGFM 242 E L +G+R S+ + + + I+ + + I L G Sbjct: 138 LELLYATGIRVSEMLDLTLADVHLTMGFIRCFGKGRKERIVPIGEAAASAIEEYLEKGRS 197 Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300 KLL P + F+N+ +KM+ F K +A +AG+ K + H +R AT + Sbjct: 198 KLLKKQP--ADALFLNHHGKKMSRQGFWKNLKKRALEAGIQKELTPHTLRHSFATHLLEN 255 Query: 301 GATAHELMATYGWKTVDQAETYT 323 GA + G + + YT Sbjct: 256 GADLRAVQEMLGHADISTTQIYT 278 >gi|71280796|ref|YP_269073.1| phage integrase family site specific recombinase [Colwellia psychrerythraea 34H] gi|71146536|gb|AAZ27009.1| site-specific recombinase, phage integrase family [Colwellia psychrerythraea 34H] Length = 334 Score = 36.2 bits (82), Expect = 6.8, Method: Compositional matrix adjust. Identities = 21/92 (22%), Positives = 46/92 (50%), Gaps = 2/92 (2%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPS 131 L ++ SA + A ++ + Y ++ G D K+ KH+R ++ + K S Sbjct: 65 LFEKFFLSASFIDKAPRTQKDYLGYKKDLLIAFGKMDINKVEPKHVRMFMDKKAVKSGIS 124 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVER 163 A + ++++ +F WA + + +NPC+ V++ Sbjct: 125 QANRHKSALQSIFSWAYERGKIKVNPCVGVKK 156 >gi|41057046|ref|NP_957649.1| putative site-specific recombinase/integrase [Bacillus methanolicus] gi|40074231|gb|AAR39395.1| putative site-specific recombinase/integrase [Bacillus methanolicus MGA3] Length = 284 Score = 36.2 bits (82), Expect = 6.9, Method: Compositional matrix adjust. Identities = 35/158 (22%), Positives = 69/158 (43%), Gaps = 11/158 (6%) Query: 177 EDMQQFKSF-WSEGSQPRLAFEFLL-YSGLRCSDSCRAGVQ--HLQNNIFSIKTQKTGTI 232 +D+++F+ G++ A LL Y+GLR S++ +Q +L + ++++ K Sbjct: 113 KDVEKFRQLVLDSGNKRNYALVTLLAYAGLRISEALNLKMQDFNLVSREITVRSGKGDKF 172 Query: 233 ITVELPD-------GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS 285 V + D ++K I + F++N Q +N T + FK + G + + Sbjct: 173 RVVFMNDKVKAALQSWLKERKEKGIEHDFLFVSNRNQPLNRTTINKLFKEYSEPIGKDIT 232 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 H +R F + + G + HE+ G + YT Sbjct: 233 PHDLRHFFCSHAISRGLSVHEVANQAGHSNIHTTLLYT 270 >gi|296163014|ref|ZP_06845790.1| integrase family protein [Burkholderia sp. Ch1-1] gi|295886758|gb|EFG66600.1| integrase family protein [Burkholderia sp. Ch1-1] Length = 419 Score = 36.2 bits (82), Expect = 7.0, Method: Compositional matrix adjust. Identities = 28/95 (29%), Positives = 40/95 (42%), Gaps = 15/95 (15%) Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINP-------------CLSVERPKRKTEGIRPWT 175 +P SA L + +F+W V Q YV NP L R + E + T Sbjct: 156 SPRSAAYALNVLSAMFRWLVEQRYVLANPFAGVKVRSHAERVGLDASRGFSEGEWLLIRT 215 Query: 176 KEDMQQFKSFWSEGSQPRLAF--EFLLYSGLRCSD 208 D ++ WSE + RL F +F +GLR S+ Sbjct: 216 LADGLEWSYGWSEAAAQRLRFLLDFGYATGLRASE 250 >gi|325662711|ref|ZP_08151308.1| hypothetical protein HMPREF0490_02048 [Lachnospiraceae bacterium 4_1_37FAA] gi|325471050|gb|EGC74277.1| hypothetical protein HMPREF0490_02048 [Lachnospiraceae bacterium 4_1_37FAA] Length = 351 Score = 36.2 bits (82), Expect = 7.1, Method: Compositional matrix adjust. Identities = 25/100 (25%), Positives = 46/100 (46%), Gaps = 4/100 (4%) Query: 113 KITTKHIRS---GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER-PKRKT 168 +I T IR+ + + + P+ + LF +AVR + NPC K K Sbjct: 98 EIQTSDIRAWQNELIKKGYAPTYLKSINNQLAALFNYAVRYYDLRDNPCRKAGSIGKSKA 157 Query: 169 EGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSD 208 + + WTK++ ++F + R+AF L ++G+R + Sbjct: 158 DEMDFWTKQEFKEFLPSMDSKPEARMAFLLLYWTGMRIGE 197 >gi|296126655|ref|YP_003633907.1| tyrosine recombinase XerD [Brachyspira murdochii DSM 12563] gi|296018471|gb|ADG71708.1| tyrosine recombinase XerD [Brachyspira murdochii DSM 12563] Length = 310 Score = 36.2 bits (82), Expect = 7.3, Method: Compositional matrix adjust. Identities = 47/201 (23%), Positives = 82/201 (40%), Gaps = 23/201 (11%) Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRLAFEF 198 L+K+ V + Y++ NP ++E + K T ++ S +E G + + FE Sbjct: 86 LYKFLVMENYISKNPTDNLEVIRLKRVLPESLTTTEVDDLLSVHNEKTDKGLRDKAIFEL 145 Query: 199 LLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDGFMKLL--------AMT 248 + SGLR S+ C + + + I+ + I V + D + +L + Sbjct: 146 MYSSGLRVSEICSLRIDDIFFEGKYLKIRGKGNKERI-VPINDRALDILQRYIQTSRVIM 204 Query: 249 PIGKET--FFINNDKQKMNATQFSIWFKAKAT--KAGVNKSA--HGVRKFSATISADAGA 302 GK+T F+N K+ ++ IW K T K+ + K+ H +R AT GA Sbjct: 205 VKGKKTSELFLNFRGDKI--SRVGIWKIVKETMKKSNITKNVYPHTLRHSFATHLIQHGA 262 Query: 303 TAHELMATYGWKTVDQAETYT 323 + G + E YT Sbjct: 263 DLRAVQRMLGHSDITTTEIYT 283 >gi|293376592|ref|ZP_06622820.1| tyrosine recombinase XerD [Turicibacter sanguinis PC909] gi|292644818|gb|EFF62900.1| tyrosine recombinase XerD [Turicibacter sanguinis PC909] Length = 305 Score = 36.2 bits (82), Expect = 7.3, Method: Compositional matrix adjust. Identities = 49/259 (18%), Positives = 107/259 (41%), Gaps = 22/259 (8%) Query: 87 LAVNSRISFESYFDQII---RKSGDFDYRKITTKHIRS---GVESRKHTPSSAIQFLTSM 140 L++N++IS+E + + + +I +H++ + R S + L+++ Sbjct: 22 LSLNTKISYERDLTEYLLYLQNQSVHQLDEIRREHVQQYLITLYERNLNTKSVARHLSAI 81 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLAF 196 R ++ + ++ NPC +E PK K + ++++ S ++ + + + Sbjct: 82 RSFHQYLMIEKISNTNPCELIESPKLKRHLPEILSIDEVEHLLSSFNTKTVNDIRNKAMV 141 Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT---IITV-ELPDGFMKLLAMTPIGK 252 E + SGLR S+ + + + ++ ++ G I+ + E+ ++L T K Sbjct: 142 ELMYASGLRVSELLQLKLDDVHLSMMFVRCVGKGDKERIVPIGEVATELLQLYLDTARPK 201 Query: 253 ------ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATA 304 + F+N + M F K +A +AG+ K S H +R AT + G Sbjct: 202 LLKKSNDWLFLNRFGEVMTRQGFWKILKKQAKEAGIEKEISPHKLRHSFATHLIENGVDL 261 Query: 305 HELMATYGWKTVDQAETYT 323 + G + + YT Sbjct: 262 RLVQEMLGHSDISTTQIYT 280 >gi|163783966|ref|ZP_02178933.1| recombinase [Hydrogenivirga sp. 128-5-R1-1] gi|159880762|gb|EDP74299.1| recombinase [Hydrogenivirga sp. 128-5-R1-1] Length = 291 Score = 36.2 bits (82), Expect = 7.3, Method: Compositional matrix adjust. Identities = 55/256 (21%), Positives = 107/256 (41%), Gaps = 33/256 (12%) Query: 82 AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI---RSGVESRKHTPSSAIQFLT 138 A+ + N+ ++ Q + +GD D IT I R ++S++ S+ + L Sbjct: 12 AYLADKSPNTVKNYNVDLKQFAQIAGDKDVESITKADIAKFRMVLQSKRLKSSTIARKLA 71 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEF 198 + F++ + E ++ +P RPK + T E++++ ++ +L + Sbjct: 72 CLNSFFQYLIDLELISSSPITKSHRPKVSNKIPSSLTHEEIKRVIE-NADNIMDKLIIKI 130 Query: 199 LLYSGLRCS---DSCRAGVQHLQN----NIFSIKTQKTGTIITVELPDGFMKLLA----- 246 LL +GLR + D R + +N NI I+ + G I ++K+L Sbjct: 131 LLTTGLRSAEILDIRRENIIIERNGQLFNIDYIENLQEGDI-------AYIKVLGKGNKE 183 Query: 247 -MTPIGK---ETFFINNDKQKMN----ATQFSIWFKAK--ATKAGVNKSAHGVRKFSATI 296 + P+ + E F K K++ + S+W + KAGV H +R +AT+ Sbjct: 184 RIVPLSENVLEELFNYLKKYKVSPIFPISYHSLWRRIINIGKKAGVILHPHKLRHTAATL 243 Query: 297 SADAGATAHELMATYG 312 + +GA + G Sbjct: 244 ALQSGAELRVIQELLG 259 >gi|320668198|gb|EFX35057.1| Site-specific recombinase, phage integrase family protein [Escherichia coli O157:H7 str. LSU-61] Length = 203 Score = 36.2 bits (82), Expect = 7.4, Method: Compositional matrix adjust. Identities = 30/134 (22%), Positives = 57/134 (42%), Gaps = 1/134 (0%) Query: 36 PYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISF 95 P ES + A L K E + R + T L ++ SA++ L+ ++ + Sbjct: 28 PTSRESVTLTAIEDGLAALWKKYEETVNHRDRAMTFGRLWEKFLASAYYSELSPRTQKDY 87 Query: 96 ESYFDQIIRKSGDFDYRKITTKHIRSGVESR-KHTPSSAIQFLTSMRVLFKWAVRQEYVA 154 + +++ G + +HIR ++ R + + + A +SM ++ W + YV Sbjct: 88 LQHQKKLLAVFGKVLADSVKPEHIRRYMDKRGEQSKTQANHEKSSMSRVYSWGYERGYVK 147 Query: 155 INPCLSVERPKRKT 168 NPC V + K K Sbjct: 148 ANPCAGVSKFKAKN 161 >gi|259500665|ref|ZP_05743567.1| integrase/recombinase XerD [Lactobacillus iners DSM 13335] gi|259168049|gb|EEW52544.1| integrase/recombinase XerD [Lactobacillus iners DSM 13335] Length = 297 Score = 36.2 bits (82), Expect = 7.4, Method: Compositional matrix adjust. Identities = 44/214 (20%), Positives = 86/214 (40%), Gaps = 23/214 (10%) Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----W 186 +S + L+S+R ++W RQ + +P L ++ PK++ + ++ + + Sbjct: 68 ASISRMLSSLRKFYQWLFRQNLIKQDPLLRIDSPKKEKRLPTAMSTTEVTKLINMPDTTT 127 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT----IITVELPDGFM 242 G + R E L +G+R S+ + + IK G+ I + ++ Sbjct: 128 DLGIRDRAILETLYATGMRVSEVINLNEDSIHEELHLIKVFGKGSKQRLIPISNVAMSWI 187 Query: 243 KLLAMTPIGK---------ETFFINNDKQKMNATQFSIW--FKAKATKAGVNKSA--HGV 289 K +T K + F+N+ K+ T+ ++W K AG+NK+ H + Sbjct: 188 KKYQITVRNKTLLESGKFEKAIFLNSRGGKI--TRQAVWQMIKRYCQLAGINKNVTPHTL 245 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYT 323 R AT + GA + G + + YT Sbjct: 246 RHTFATHLLENGADLRIVQEILGHSDISTTQIYT 279 >gi|325522051|gb|EGD00723.1| phage integrase family protein [Burkholderia sp. TJI49] Length = 311 Score = 36.2 bits (82), Expect = 7.6, Method: Compositional matrix adjust. Identities = 40/154 (25%), Positives = 61/154 (39%), Gaps = 24/154 (15%) Query: 86 SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT----PSSAIQFLTSMR 141 SL + I++ S+ + + R + R VE R T SA L + Sbjct: 6 SLTTDDAIAYRSFLRRPTPRE-----RWVGPSRPRQSVEWRPFTGPLSARSAAYALNVLS 60 Query: 142 VLFKWAVRQEYVAINP-------------CLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 LF+W V Q YV NP L V R + E + T D ++ WSE Sbjct: 61 ALFRWLVEQRYVLANPFAGVKIKSQVQRAGLDVSRGFSEGEWLLIRTLADGLEWSYGWSE 120 Query: 189 GSQPRLAF--EFLLYSGLRCSDSCRAGVQHLQNN 220 + RL F +F +GLR S+ A + ++ + Sbjct: 121 AAAQRLRFLLDFGYATGLRASELVGATLGDIRRD 154 >gi|298386165|ref|ZP_06995722.1| tyrosine recombinase XerC [Bacteroides sp. 1_1_14] gi|298261393|gb|EFI04260.1| tyrosine recombinase XerC [Bacteroides sp. 1_1_14] Length = 293 Score = 36.2 bits (82), Expect = 7.6, Method: Compositional matrix adjust. Identities = 29/110 (26%), Positives = 53/110 (48%), Gaps = 8/110 (7%) Query: 107 GDFDYRKITTKHIRSGVES---RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER 163 G FD ++ + IR + S R +T +S + L+S+R +K+ +RQ V ++P + Sbjct: 40 GKFDPLEVEGELIREWIVSLMDRGYTSTSVNRKLSSLRSFYKYLLRQGEVTVDPLRKITG 99 Query: 164 PKRKTEGIRPWTKEDMQQF--KSFWSE---GSQPRLAFEFLLYSGLRCSD 208 PK K + +M + + + E G + RL E +G+R S+ Sbjct: 100 PKNKKPLPVFLKENEMDKLLDDTDFGEGFKGCRDRLIIEMFYATGMRLSE 149 >gi|322384983|ref|ZP_08058635.1| phage integrase-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321150178|gb|EFX43689.1| phage integrase-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 404 Score = 36.2 bits (82), Expect = 7.6, Method: Compositional matrix adjust. Identities = 38/163 (23%), Positives = 73/163 (44%), Gaps = 26/163 (15%) Query: 107 GDFDYRKITTKHIRSGVES-RKHTPSSAIQFLTSMRV-LFKWAVRQEYVAINPCLSVERP 164 G +T H++ S R+H + +Q + ++ F AV+ ++ NP V++P Sbjct: 139 GSLRLTDLTPNHVQKFYNSLREHYGAGYVQNIGNLLSKAFTQAVKWNMISRNPIPLVKKP 198 Query: 165 K--RKTEGIRPWTKEDMQQFKSFWSEGSQPRL---AFEFLLYSGLRCSD----------- 208 RK ++ WT ED ++F + +G P+L F L SG+R + Sbjct: 199 SLSRKNTKMKTWTVEDQRKFLDYAKDG--PKLYYVIFLLALTSGMRKGELLGLIWDDVDT 256 Query: 209 -----SCRAGVQHLQNNIFSIKTQKTGTII-TVELPDGFMKLL 245 S + + + Q ++ KT + I T++LP+ +K++ Sbjct: 257 KKGIVSIKRTIVYAQRKLYLKDMPKTESAIRTIQLPEPTIKVM 299 >gi|270012961|gb|EFA09409.1| hypothetical protein TcasGA2_TC005211 [Tribolium castaneum] Length = 573 Score = 36.2 bits (82), Expect = 7.6, Method: Compositional matrix adjust. Identities = 34/125 (27%), Positives = 54/125 (43%), Gaps = 14/125 (11%) Query: 222 FSIKTQKTGTIITVELPDGFMKLL-AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA 280 F I K + +EL +M++ TP + FFIN K+K I K A Sbjct: 394 FIITAGKLENVNLLELVRRYMEIRPTKTPHNR--FFINYTKEKCTIQPVGI-HKIGGVPA 450 Query: 281 GVNK----------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 V K + H R+ SA++ A+AGAT + GW++ AE Y + + + Sbjct: 451 IVAKYLGLENASSYTGHCFRRSSASLLANAGATMERIKRHGGWRSTTVAEGYIEECENTK 510 Query: 331 LGIKN 335 + + N Sbjct: 511 IKVAN 515 >gi|303237551|ref|ZP_07324115.1| site-specific recombinase, phage integrase family [Prevotella disiens FB035-09AN] gi|302482270|gb|EFL45301.1| site-specific recombinase, phage integrase family [Prevotella disiens FB035-09AN] Length = 428 Score = 36.2 bits (82), Expect = 7.7, Method: Compositional matrix adjust. Identities = 49/233 (21%), Positives = 89/233 (38%), Gaps = 29/233 (12%) Query: 90 NSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVR 149 N ISF+ + ++ + DF + +E R T S FL + +W+ + Sbjct: 163 NPNISFDDFTEEAMNDYMDF---------LGHKLEMRNSTISKQFGFL---KWFLRWSKK 210 Query: 150 QEYVAINPCLSVERPKRKT--EGIRPWTKEDMQQFKSFWSEGSQPRL-----AFEFLLYS 202 + + N +PK K + I T+++ +Q + GS+ L F F ++ Sbjct: 211 KGFHQ-NAAFETYKPKLKNPEKPIIFLTRKEQEQLHDYQIPGSKQYLERVRDVFSFCCFT 269 Query: 203 GLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM---TPIGKETFFINN 259 GLR SD ++++ I T KT + ++L +L P + Sbjct: 270 GLRYSDVYNLRRSDIKDDHIEITTIKTTDYLKIDLNKHSRSILEKYKDIPFKNDKALPVI 329 Query: 260 DKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYG 312 Q+MN + K AG++ H + + D +ELM T+ Sbjct: 330 SNQRMNE-----YLKELCELAGIDSPVH-LTYYRGQQRIDETHPKYELMGTHA 376 >gi|256840355|ref|ZP_05545863.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|256737627|gb|EEU50953.1| conserved hypothetical protein [Parabacteroides sp. D13] Length = 393 Score = 36.2 bits (82), Expect = 7.7, Method: Compositional matrix adjust. Identities = 47/208 (22%), Positives = 82/208 (39%), Gaps = 30/208 (14%) Query: 147 AVRQEYVAINPCLSVE---RPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSG 203 AVR + NP L +E +P+++ T E++++ + + AF F ++G Sbjct: 184 AVRDGLIEQNPFLLLEAKEKPQKRVAEREFLTIEEIKKVMNTPCRYELVKKAFLFSCFTG 243 Query: 204 LRCSDSCRAG--------------VQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTP 249 LR SD + H+Q KT +T+ L + K + Sbjct: 244 LRYSDMKALNWSEIHKAADGKTEYIDHIQ--------VKTKDRVTIPLSEETKKWMPKRE 295 Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHEL 307 G + F N + +T + K AG+ K + H R +AT+ GA+ + + Sbjct: 296 EGIDNIFHN---LTITSTTVEVVLKEWMEAAGITKHITYHCSRHTAATMLLTLGASIYVV 352 Query: 308 MATYGWKTVDQAETYTKGADRIRLGIKN 335 G K++ E Y K D+ +L N Sbjct: 353 SKILGHKSIKMTEIYAKIVDKKKLETVN 380 >gi|74311311|ref|YP_309730.1| putative integrase fragment [Shigella sonnei Ss046] gi|73854788|gb|AAZ87495.1| putative integrase fragment [Shigella sonnei Ss046] Length = 270 Score = 36.2 bits (82), Expect = 7.8, Method: Compositional matrix adjust. Identities = 31/145 (21%), Positives = 59/145 (40%), Gaps = 2/145 (1%) Query: 93 ISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQ 150 I++ S I R D ITTK I + + + +SA +++ F+ A+ + Sbjct: 12 INYMSKIKAIRRGLPDAPLEDITTKEIAAMLNGYIDEGKAASAKLIRSTLSDAFREAIAE 71 Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSC 210 ++ P + K + R E ++ +++ S RLA E + +G R D C Sbjct: 72 GHITTKPVAATRAAKSEVRRSRLTADEYLKIYQTAESSPCWLRLAMELAVVTGQRVGDLC 131 Query: 211 RAGVQHLQNNIFSIKTQKTGTIITV 235 + + ++ KTG I + Sbjct: 132 EMKWSDIVDGYLYVEQSKTGVKIAI 156 >gi|71042133|pdb|1Z1G|A Chain A, Crystal Structure Of A Lambda Integrase Tetramer Bound To A Holliday Junction gi|71042134|pdb|1Z1G|C Chain C, Crystal Structure Of A Lambda Integrase Tetramer Bound To A Holliday Junction gi|71042141|pdb|1Z1G|B Chain B, Crystal Structure Of A Lambda Integrase Tetramer Bound To A Holliday Junction gi|71042144|pdb|1Z1G|D Chain D, Crystal Structure Of A Lambda Integrase Tetramer Bound To A Holliday Junction Length = 356 Score = 36.2 bits (82), Expect = 7.8, Method: Compositional matrix adjust. Identities = 58/292 (19%), Positives = 111/292 (38%), Gaps = 29/292 (9%) Query: 25 FRKGHGRRIRLPYPHESTFIPAYMSALTGST--PKREYINSPRKKPTTLKWLISEYRKSA 82 F G RRI + + I A + +G P INS TL + Y K Sbjct: 35 FGLGRDRRIAI-----TEAIQANIELFSGHKHKPLTARINS--DNSVTLHSWLDRYEKIL 87 Query: 83 HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKHTPSSAIQFLTSM 140 + + I++ S I R D ITTK I + + + +SA +++ Sbjct: 88 ASRGIKQKTLINYXSKIKAIRRGLPDAPLEDITTKEIAAXLNGYIDEGKAASAKLIRSTL 147 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL 200 F+ A+ + ++ N + K + R E ++ +++ S RLA E + Sbjct: 148 SDAFREAIAEGHITTNHVAATRAAKSEVRRSRLTADEYLKIYQAAESSPCWLRLAXELAV 207 Query: 201 YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF-MKLLAMTP---------- 249 +G R D C + + ++ KTG + + +P + L ++ Sbjct: 208 VTGQRVGDLCEXKWSDIVDGYLYVEQSKTG--VKIAIPTALHIDALGISXKETLDKCKEI 265 Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA-----HGVRKFSATI 296 +G ET + ++ +++ S +F +G++ H +R SA + Sbjct: 266 LGGETIIASTRREPLSSGTVSRYFXRARKASGLSFEGDPPTFHELRSLSARL 317 >gi|212639574|ref|YP_002316094.1| site-specific tyrosine recombinase XerC [Anoxybacillus flavithermus WK1] gi|254799325|sp|B7GGC7|XERC_ANOFW RecName: Full=Tyrosine recombinase xerC gi|212561054|gb|ACJ34109.1| Site-specific recombinase XerD [Anoxybacillus flavithermus WK1] Length = 300 Score = 36.2 bits (82), Expect = 7.8, Method: Compositional matrix adjust. Identities = 23/113 (20%), Positives = 53/113 (46%), Gaps = 4/113 (3%) Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 + RK + S + ++S+R +K+ +R++ V+ NP PK++ + ++++Q Sbjct: 63 LHQRKQSSRSIARKMSSLRSFYKFLLREKIVSENPFALASLPKKEQKIPHFLYPDELEQL 122 Query: 183 KSF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231 + G + + E L +G+R S+ C + H+ ++ +I G Sbjct: 123 FVVNDLNTAIGQRNQAMIELLYATGIRVSECCNIRLSHIDFSVCTILISGKGN 175 >gi|225013068|ref|ZP_03703483.1| integrase family protein [Flavobacteria bacterium MS024-2A] gi|225002796|gb|EEG40777.1| integrase family protein [Flavobacteria bacterium MS024-2A] Length = 289 Score = 36.2 bits (82), Expect = 7.9, Method: Compositional matrix adjust. Identities = 46/213 (21%), Positives = 80/213 (37%), Gaps = 18/213 (8%) Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK--RKTEGIRPWTKEDM--QQFKS 184 +P + + L+ +R F + + + Y NP +E PK RK + + ++ Q Sbjct: 57 SPHTQARRLSGLRSFFDYLIFESYRTSNPTDLIEAPKLGRKLPDVLSTEEIELMINQINL 116 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI--------ITVE 236 +G + R E L SG+R S+ + +L I+ G I+ E Sbjct: 117 SHPQGQRNRAILEILYGSGIRVSELTNLSLSNLFFEEDMIRVHGKGNKQRLVPMGGISKE 176 Query: 237 LPDGFM----KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVR 290 + ++ K ++ K+ F+N + K A KA V K H R Sbjct: 177 FLEEYITETRKNQKISVKDKDIVFLNRRGNGLTRQMIFTLIKDLAIKANVKKQVGPHTFR 236 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYT 323 AT + GA + G +++ E YT Sbjct: 237 HSFATHLLENGADLRTIQILMGHESITTTEIYT 269 >gi|210610936|ref|ZP_03288661.1| hypothetical protein CLONEX_00851 [Clostridium nexile DSM 1787] gi|210152236|gb|EEA83243.1| hypothetical protein CLONEX_00851 [Clostridium nexile DSM 1787] Length = 351 Score = 36.2 bits (82), Expect = 7.9, Method: Compositional matrix adjust. Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 1/82 (1%) Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER-PKRKTEGIRPWTKEDMQQFKSFW 186 + P+ + LF +AVR + NPC K K + + WTK++ ++F Sbjct: 116 YAPTYLKSINNQLAALFNYAVRYYDLRDNPCRKAGSIGKSKADEMDFWTKQEFKEFLPSM 175 Query: 187 SEGSQPRLAFEFLLYSGLRCSD 208 + R+AF L ++G+R + Sbjct: 176 ENKPEARMAFLILYWTGMRIGE 197 >gi|326407821|gb|ADZ64892.1| integrase [Lactococcus lactis subsp. lactis CV56] Length = 378 Score = 36.2 bits (82), Expect = 8.0, Method: Compositional matrix adjust. Identities = 30/122 (24%), Positives = 57/122 (46%), Gaps = 14/122 (11%) Query: 99 FDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPC 158 F+ +++ G+ D ++I I+S + + + +PS+ S +LF +A Y+ NP Sbjct: 96 FNTFLKRFGEMDIKEINPDQIQSFLFNSQLSPSTRSLRKNSFNLLFTYAKNVGYIEANPV 155 Query: 159 LSVERPKRKTEGIRPWTKE-----DMQQFKSFWSEGSQP-------RLAFEFLLYSGLRC 206 V PK K I K+ ++++ + E ++P L +EFL +GLR Sbjct: 156 ERVVLPKEKN-TIEELKKKQNKFLNLEEMRIIL-EKNKPIEKDIRKLLIYEFLFLTGLRI 213 Query: 207 SD 208 + Sbjct: 214 GE 215 >gi|319649574|ref|ZP_08003730.1| tyrosine recombinase [Bacillus sp. 2_A_57_CT2] gi|317398736|gb|EFV79418.1| tyrosine recombinase [Bacillus sp. 2_A_57_CT2] Length = 300 Score = 36.2 bits (82), Expect = 8.0, Method: Compositional matrix adjust. Identities = 31/131 (23%), Positives = 63/131 (48%), Gaps = 11/131 (8%) Query: 110 DYRKITTKHIR---SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166 D K+ + +R + + +K + S + ++S+R FK+ +R+E VA NP V PK Sbjct: 48 DLTKVAYQDVRIYLTELYDKKMSRKSVARKISSLRSFFKFLLREEKVAENPFALVSIPKA 107 Query: 167 KTEGIRP---WTKEDMQQFKSFWSE---GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN 220 + + P + E MQ F + + G + + E L +G+R S+ + ++ L Sbjct: 108 QKK--LPEFFYEAEMMQLFNACEASTPLGQRNKALLELLYATGIRVSECSQIRLKDLDMY 165 Query: 221 IFSIKTQKTGT 231 + ++ + G+ Sbjct: 166 LSTVLVRGKGS 176 >gi|186681250|ref|YP_001864446.1| phage integrase family protein [Nostoc punctiforme PCC 73102] gi|186463702|gb|ACC79503.1| phage integrase family protein [Nostoc punctiforme PCC 73102] Length = 400 Score = 36.2 bits (82), Expect = 8.0, Method: Compositional matrix adjust. Identities = 25/117 (21%), Positives = 54/117 (46%), Gaps = 10/117 (8%) Query: 112 RKITTKHIRSGVESRKH-----TPSSAIQFLTSMRVLFKWAVRQEYVAINP----CLSVE 162 + + TK + + R H +P++A + LT + KWA+ NP ++ Sbjct: 134 KGLPTKDLTQAIAIRDHLLTQLSPNAAKRVLTYLAACCKWAMGSGLAKDNPFAGMSEDIK 193 Query: 163 RPKRKTEGIRPWTKEDMQQ-FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ 218 PK ++ I P++K++M ++F + + +FL ++G R ++ +H+ Sbjct: 194 LPKHDSDAIDPFSKQEMNNIIQAFETTRAHYAPFVKFLFWTGCRTGEAIALQWKHIN 250 >gi|312872390|ref|ZP_07732460.1| tyrosine recombinase XerD [Lactobacillus iners LEAF 2062A-h1] gi|312873969|ref|ZP_07734005.1| tyrosine recombinase XerD [Lactobacillus iners LEAF 2052A-d] gi|312875440|ref|ZP_07735443.1| tyrosine recombinase XerD [Lactobacillus iners LEAF 2053A-b] gi|311088951|gb|EFQ47392.1| tyrosine recombinase XerD [Lactobacillus iners LEAF 2053A-b] gi|311090518|gb|EFQ48926.1| tyrosine recombinase XerD [Lactobacillus iners LEAF 2052A-d] gi|311092213|gb|EFQ50587.1| tyrosine recombinase XerD [Lactobacillus iners LEAF 2062A-h1] Length = 296 Score = 36.2 bits (82), Expect = 8.1, Method: Compositional matrix adjust. Identities = 49/223 (21%), Positives = 88/223 (39%), Gaps = 41/223 (18%) Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK---------TEGIR----PWTKE 177 +S + L+S+R ++W RQ + +P L ++ PK++ TE + P T Sbjct: 67 ASISRMLSSLRKFYQWLFRQNLIKQDPLLRIDSPKKEKRLPIALSTTEVTKLINMPDTTT 126 Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT----II 233 D+ G + R E L +G+R S+ + + IK G+ I Sbjct: 127 DL---------GIRDRAILETLYATGMRVSEVINLNEDSIHEELHLIKVFGKGSKQRLIP 177 Query: 234 TVELPDGFMKLLAMTPIGK---------ETFFINNDKQKMNATQFSIW--FKAKATKAGV 282 + ++K +T K + F+N+ K+ T+ ++W K AG+ Sbjct: 178 ISNVAMSWIKKYQITVRNKTLLESGKFEKAIFLNSRGGKI--TRQAVWQMIKRYCQLAGI 235 Query: 283 NKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 NK+ H +R AT + GA + G + + YT Sbjct: 236 NKNVTPHTLRHTFATHLLENGADLRIVQEILGHSDISTTQIYT 278 >gi|307149687|ref|YP_003890995.1| integrase family protein [Cyanothece sp. PCC 7822] gi|306986753|gb|ADN18630.1| integrase family protein [Cyanothece sp. PCC 7822] Length = 286 Score = 36.2 bits (82), Expect = 8.1, Method: Compositional matrix adjust. Identities = 40/188 (21%), Positives = 70/188 (37%), Gaps = 9/188 (4%) Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 ++ P+S + L +++ LF +A + E ++ NP +V PK K ED + + Sbjct: 63 RYAPTSRKRKLAAIKSLFSFAHKNELISTNPGAAVPSPKTKDAISERILTEDEWERMLYA 122 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN--------NIFSIKTQKTGTIITVELP 238 Q +L L + R S+ C + ++ +F + IT +L Sbjct: 123 EPNRQHQLMLTLLYETRARVSEFCALKWKDIREKPDGAALVTLFGKGNKTRKVTITPQLW 182 Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATIS 297 A G F+N + + Q KA + G+ S H +R AT Sbjct: 183 QVLKATKAADAKGDSPLFLNYRHKAYSTVQVWRIVKAAGERVGIYGVSPHWIRHTGATHQ 242 Query: 298 ADAGATAH 305 G+ H Sbjct: 243 LINGSPLH 250 >gi|253774276|ref|YP_003037107.1| lambda integrase [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253325320|gb|ACT29922.1| lambda integrase [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|313848583|emb|CAQ31222.2| enterobacteria phage lambda, integration protein [Escherichia coli BL21(DE3)] Length = 307 Score = 36.2 bits (82), Expect = 8.2, Method: Compositional matrix adjust. Identities = 47/215 (21%), Positives = 82/215 (38%), Gaps = 11/215 (5%) Query: 25 FRKGHGRRIRLPYPHESTFIPAYMSALTGST--PKREYINSPRKKPTTLKWLISEYRKSA 82 F G RRI + + I A + +G P INS TL + Y K Sbjct: 35 FGLGRDRRIAI-----TEAIQANIELFSGHKHKPLTARINS--DNSVTLHSWLDRYEKIL 87 Query: 83 HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKHTPSSAIQFLTSM 140 + + I++ S I R D ITTK I + + + +SA +++ Sbjct: 88 ASRGIKQKTLINYMSKIKAIRRGLPDAPLEDITTKEIAAMLNGYIDEGKAASAKLIRSTL 147 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL 200 F+ A+ + ++ N + K + R E ++ +++ S RLA E + Sbjct: 148 SDAFREAIAEGHITTNHVAATRAAKSEVRRSRLTADEYLKIYQAAESSPCWLRLAMELAV 207 Query: 201 YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235 +G R D C + + ++ KTG I + Sbjct: 208 VTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAI 242 >gi|294625249|ref|ZP_06703889.1| site-specific recombinase, phage integrase family [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292600477|gb|EFF44574.1| site-specific recombinase, phage integrase family [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 360 Score = 36.2 bits (82), Expect = 8.5, Method: Compositional matrix adjust. Identities = 41/181 (22%), Positives = 70/181 (38%), Gaps = 13/181 (7%) Query: 156 NPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF--EFLLYSGLRCSD--SCR 211 +P L + RP R T + Q+ S P L + L +G+R S+ R Sbjct: 159 SPVLGIRRPPPGPGRDRRLTPHEEQRLLRAVDGHSNPMLGWIVRLALETGMRASELVGLR 218 Query: 212 AGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT------PIGKETFFINNDKQ--K 263 L + ++ K G+ TV L +++L + PI + F + K Sbjct: 219 RSQVDLVRRVARLQQTKNGSSRTVPLTQEAVQVLRVALANPVRPIDTDLLFYGEPGRDGK 278 Query: 264 MNATQFS-IWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 + QF+ W K K + H +R + + +AG + E+ A G K++ Y Sbjct: 279 RRSYQFNPAWMKLKCDAGMADLHFHDLRHEAISRLVEAGLSDQEVAAISGHKSMQMLRRY 338 Query: 323 T 323 T Sbjct: 339 T 339 >gi|170757708|ref|YP_001782133.1| phage integrase [Clostridium botulinum B1 str. Okra] gi|169122920|gb|ACA46756.1| phage integrase [Clostridium botulinum B1 str. Okra] Length = 331 Score = 36.2 bits (82), Expect = 8.5, Method: Compositional matrix adjust. Identities = 24/97 (24%), Positives = 43/97 (44%), Gaps = 3/97 (3%) Query: 114 ITTKHIRS--GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171 I T +R G + PSS ++ ++ F W +EY+ NP +++ K Sbjct: 97 INTMDLRMFLGARCKNMKPSSMNGQISILKSFFGWLEAEEYIPKNPAAKLKQTKEPKRVR 156 Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSD 208 +P T+E+ + + Q L EFL+ +G R + Sbjct: 157 KPLTEEEAELLRQACETDRQKALT-EFLISTGCRLDE 192 >gi|326692503|ref|ZP_08229508.1| tyrosine recombinase XerD [Leuconostoc argentinum KCTC 3773] Length = 298 Score = 35.8 bits (81), Expect = 8.9, Method: Compositional matrix adjust. Identities = 49/235 (20%), Positives = 95/235 (40%), Gaps = 26/235 (11%) Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 +S I+ +TS+R F + +++ V NP ++ PK+ T + ++ + ++ + Sbjct: 71 NSVIRMVTSLRKFFGYLAQEKIVLPNPMRDIQPPKKATHLPAVLSVAEIDALLAVPTDTT 130 Query: 191 ----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT---IITV--ELPDGF 241 + R E + +GLR S+ + L + I+T G II + D Sbjct: 131 PLDIRNRTLIEVMYATGLRVSELVNLKLSDLHLQLGLIQTIGKGDKERIIPIGEVAADWL 190 Query: 242 MKLLAMTPI----GKETFFINNDKQKMNATQFSIW--FKAKATKAGVNK--SAHGVRKFS 293 + A + + GK + ++ + + T+ +W K +AG+ K S H +R Sbjct: 191 TRYFASSRLALLKGKASPYVFLNDRGGQLTRQGVWKIIKKLVVEAGITKDVSPHTLRHSF 250 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348 AT + GA + G + + YT + +R+S V D P Sbjct: 251 ATHILENGADLRIVQELLGHADISTTQIYTH---------ISKKRLSEVYDQYHP 296 >gi|167464469|ref|ZP_02329558.1| prophage LambdaBa04, site-specific recombinase, phage integrase family protein [Paenibacillus larvae subsp. larvae BRL-230010] Length = 379 Score = 35.8 bits (81), Expect = 9.0, Method: Compositional matrix adjust. Identities = 38/163 (23%), Positives = 73/163 (44%), Gaps = 26/163 (15%) Query: 107 GDFDYRKITTKHIRSGVES-RKHTPSSAIQFLTSMRV-LFKWAVRQEYVAINPCLSVERP 164 G +T H++ S R+H + +Q + ++ F AV+ ++ NP V++P Sbjct: 114 GSLRLTDLTPNHVQKFYNSLREHYGAGYVQNIGNLLSKAFTQAVKWNMISRNPIPLVKKP 173 Query: 165 K--RKTEGIRPWTKEDMQQFKSFWSEGSQPRL---AFEFLLYSGLRCSD----------- 208 RK ++ WT ED ++F + +G P+L F L SG+R + Sbjct: 174 SLSRKNTKMKTWTVEDQRKFLDYAKDG--PKLYYVIFLLALTSGMRKGELLGLIWDDVDT 231 Query: 209 -----SCRAGVQHLQNNIFSIKTQKTGTII-TVELPDGFMKLL 245 S + + + Q ++ KT + I T++LP+ +K++ Sbjct: 232 KKGIVSIKRTIVYAQRKLYLKDMPKTESAIRTIQLPEPTIKVM 274 >gi|323186667|gb|EFZ71993.1| phage integrase family protein [Escherichia coli RN587/1] Length = 300 Score = 35.8 bits (81), Expect = 9.1, Method: Compositional matrix adjust. Identities = 36/159 (22%), Positives = 66/159 (41%), Gaps = 6/159 (3%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR-KHTPSS 132 L ++ SA++ L+ ++ + + +++ G I HIR ++ R + + + Sbjct: 6 LWEKFLASAYYSDLSPRTQKDYLQHQKKLLAVFGKVPADSIKPVHIRRYMDKRGEQSKTQ 65 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192 A +SM ++ W + YV NPC V + K K KE +++ S P Sbjct: 66 ANHEKSSMSRVYSWGYERGYVKGNPCAGVSKFKAKNRERYVTDKE----YQAVLSVAPLP 121 Query: 193 R-LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230 +A E R SD + + N+ I+ KTG Sbjct: 122 VFIAMEIAYLCAARVSDVLSLKWEQIGNDGIFIQQGKTG 160 >gi|318605376|emb|CBY26874.1| hypothetical protein Y11_13071 [Yersinia enterocolitica subsp. palearctica Y11] Length = 332 Score = 35.8 bits (81), Expect = 9.3, Method: Compositional matrix adjust. Identities = 30/133 (22%), Positives = 62/133 (46%), Gaps = 4/133 (3%) Query: 39 HESTFIP--AYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFE 96 H ++ IP + LT ++IN + K +TL L+ + +S + LA ++ + Sbjct: 24 HHNSPIPWSTFAQYLTVWVHYEKFINEKKDK-STLNTLVESFFRSVDFIDLATETQKDYR 82 Query: 97 SYFDQIIRKSGDFDYRKITTKHIRSGVESRK-HTPSSAIQFLTSMRVLFKWAVRQEYVAI 155 Y +++ G I +H+R ++ R + + A + T M ++W + +V Sbjct: 83 KYATKLLPVFGAMHPDNIKPEHVRKYMDKRGLSSRTQANREKTFMSRAYRWGYERGFVKG 142 Query: 156 NPCLSVERPKRKT 168 NPC V++ K ++ Sbjct: 143 NPCKGVKQFKEES 155 >gi|9626273|ref|NP_040609.1| integration protein [Enterobacteria phage lambda] gi|138569|sp|P03700|VINT_LAMBD RecName: Full=Integrase gi|215133|gb|AAA96562.1| integration protein [Enterobacteria phage lambda] gi|16209072|gb|AAL09849.1| integrase [CRIM helper plasmid pAH57] gi|16209183|gb|AAL09916.1| integrase [CRIM helper plasmid pINT-ts] gi|29415431|gb|AAO12751.1| integrase [CRIM plasmid pKD15] gi|29415712|gb|AAO12755.1| integrase [CRIM plasmid pKD16] gi|62825139|gb|AAY16131.1| lambda INT [Cloning vector lambda gt10] gi|63014370|gb|AAY25566.1| Int [Mus musculus] Length = 356 Score = 35.8 bits (81), Expect = 9.3, Method: Compositional matrix adjust. Identities = 47/215 (21%), Positives = 82/215 (38%), Gaps = 11/215 (5%) Query: 25 FRKGHGRRIRLPYPHESTFIPAYMSALTGST--PKREYINSPRKKPTTLKWLISEYRKSA 82 F G RRI + + I A + +G P INS TL + Y K Sbjct: 35 FGLGRDRRIAI-----TEAIQANIELFSGHKHKPLTARINS--DNSVTLHSWLDRYEKIL 87 Query: 83 HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKHTPSSAIQFLTSM 140 + + I++ S I R D ITTK I + + + +SA +++ Sbjct: 88 ASRGIKQKTLINYMSKIKAIRRGLPDAPLEDITTKEIAAMLNGYIDEGKAASAKLIRSTL 147 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL 200 F+ A+ + ++ N + K + R E ++ +++ S RLA E + Sbjct: 148 SDAFREAIAEGHITTNHVAATRAAKSEVRRSRLTADEYLKIYQAAESSPCWLRLAMELAV 207 Query: 201 YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235 +G R D C + + ++ KTG I + Sbjct: 208 VTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAI 242 >gi|25010286|ref|NP_734681.1| site-specific recombinase, phage integrase family [Streptococcus agalactiae NEM316] gi|76787040|ref|YP_328946.1| phage integrase family site specific recombinase [Streptococcus agalactiae A909] gi|76798149|ref|ZP_00780402.1| site-specific recombinase, phage integrase family [Streptococcus agalactiae 18RS21] gi|77405331|ref|ZP_00782426.1| site-specific recombinase, phage integrase family [Streptococcus agalactiae H36B] gi|23094638|emb|CAD45856.1| Unknown [Streptococcus agalactiae NEM316] gi|76562097|gb|ABA44681.1| site-specific recombinase, phage integrase family [Streptococcus agalactiae A909] gi|76586508|gb|EAO63013.1| site-specific recombinase, phage integrase family [Streptococcus agalactiae 18RS21] gi|77176009|gb|EAO78783.1| site-specific recombinase, phage integrase family [Streptococcus agalactiae H36B] Length = 384 Score = 35.8 bits (81), Expect = 9.4, Method: Compositional matrix adjust. Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 3/66 (4%) Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRP-WTKEDMQQFKS--FWSEGSQPRLAFEFL 199 +F +A++ + + NP + PKRK I WT +++Q+F + E + F L Sbjct: 142 VFDFAIKMKLLKHNPMTEIIMPKRKKTRIENYWTVQELQEFLAIVLQEEPYKHYALFRLL 201 Query: 200 LYSGLR 205 YSGLR Sbjct: 202 AYSGLR 207 >gi|116494854|ref|YP_806588.1| integrase [Lactobacillus casei ATCC 334] gi|191638361|ref|YP_001987527.1| Tyrosine recombinase xerD [Lactobacillus casei BL23] gi|227535149|ref|ZP_03965198.1| site-specific DNA tyrosine recombinase [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|239631553|ref|ZP_04674584.1| tyrosine recombinase xerD [Lactobacillus paracasei subsp. paracasei 8700:2] gi|301066416|ref|YP_003788439.1| integrase [Lactobacillus casei str. Zhang] gi|116105004|gb|ABJ70146.1| tyrosine recombinase XerD subunit [Lactobacillus casei ATCC 334] gi|190712663|emb|CAQ66669.1| Tyrosine recombinase xerD [Lactobacillus casei BL23] gi|227187194|gb|EEI67261.1| site-specific DNA tyrosine recombinase [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|239526018|gb|EEQ65019.1| tyrosine recombinase xerD [Lactobacillus paracasei subsp. paracasei 8700:2] gi|300438823|gb|ADK18589.1| Integrase [Lactobacillus casei str. Zhang] gi|327382389|gb|AEA53865.1| hypothetical protein LC2W_1532 [Lactobacillus casei LC2W] gi|327385590|gb|AEA57064.1| hypothetical protein LCBD_1567 [Lactobacillus casei BD-II] Length = 293 Score = 35.8 bits (81), Expect = 9.5, Method: Compositional matrix adjust. Identities = 48/218 (22%), Positives = 87/218 (39%), Gaps = 31/218 (14%) Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE- 188 P+S + ++++R +++ +R+ ++ +P ++ PKR P T Q+ + ++ Sbjct: 65 PASVSRMISALRKFYRFLLREGAISADPMTKIDTPKRAQH--LPATLSS-QEVDALMAKP 121 Query: 189 ------GSQPRLAFEFLLYSGLRCSD--SCRAGVQHLQNNIFSI--KTQKTGTI------ 232 G + R FE + +GLR S+ R HL N+ + K K + Sbjct: 122 DTDKPLGLRDRAIFELMYATGLRVSEVVDLRLDQLHLAMNLLQVTGKGDKERLVPISPQA 181 Query: 233 ---ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIW--FKAKATKAGVNKSA- 286 + L + KLL + + F+N M T+ IW KA G+ K Sbjct: 182 TQWVDRYLQEARPKLLKR--VQPKNVFVNFHGGPM--TRQGIWKNLKAYIASIGIEKDVT 237 Query: 287 -HGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 H +R AT + GA + G + + YT Sbjct: 238 PHTLRHSFATRLLENGADLRVVQELLGHSDISTTQIYT 275 >gi|319405702|emb|CBI79325.1| Phage-related integrase/recombinase (fragment) [Bartonella sp. AR 15-3] Length = 68 Score = 35.8 bits (81), Expect = 9.6, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 30/60 (50%) Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343 KSA+ +RK + A++ A + + W YTK ADR +L I+ R++ S V Sbjct: 9 KSAYSLRKLATARFANSDAIVTQFKVIFSWTDDTMVALYTKNADRKKLAIEMIRKLKSDV 68 >gi|157692850|ref|YP_001487312.1| site-specific tyrosine recombinase XerD [Bacillus pumilus SAFR-032] gi|157681608|gb|ABV62752.1| tyrosine recombinase [Bacillus pumilus SAFR-032] Length = 296 Score = 35.8 bits (81), Expect = 9.6, Method: Compositional matrix adjust. Identities = 48/263 (18%), Positives = 111/263 (42%), Gaps = 28/263 (10%) Query: 87 LAVNSRISF----ESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH---TPSSAIQFLTS 139 L+ N+ +S+ ++Y ++ D + +T HI ++ K + ++++ L+S Sbjct: 18 LSENTIVSYKRDLQNYLSFLMTHEQLSDIKDVTRLHIIHYLKQLKEEGKSSKTSVRHLSS 77 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLA 195 +R ++ +R++ +P ++E K + + + + ++++ ++ + + + Sbjct: 78 IRSFHQFLLREKVTKDDPSWNIETQKTERKLPKVLSLGEVEKLLDTPNQHTPFDYRDKAM 137 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-------------QKTGTIITVELPDGFM 242 E L +G+R S+ + + + I+ + + I L G Sbjct: 138 LELLYATGIRVSEMLDLTLADVHLTMGFIRCFGKGRKERIVPIGEAAASAIEEYLEKGRG 197 Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300 KLL P + F+N+ +KM+ F K +A +AG+ K + H +R AT + Sbjct: 198 KLLKKQP--ADALFLNHHGKKMSRQGFWKNLKKRALEAGIQKELTPHTLRHSFATHLLEN 255 Query: 301 GATAHELMATYGWKTVDQAETYT 323 GA + G + + YT Sbjct: 256 GADLRAVQEMLGHADISTTQIYT 278 >gi|329667143|gb|AEB93091.1| putative prophage integrase [Lactobacillus johnsonii DPC 6026] Length = 391 Score = 35.8 bits (81), Expect = 9.7, Method: Compositional matrix adjust. Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 8/81 (9%) Query: 137 LTSMRVLFKWAVRQEYVAINPCLSV------ERPKRKTEGIRPWTKEDMQQFKSFWSE-G 189 + LF++ +R YV+ NP + RP+R TE +T++++ QF E G Sbjct: 138 INEFNALFEYGIRLNYVSENPLKRIIIPKKTSRPRRDTEH-NVYTRDELNQFLEVAKEYG 196 Query: 190 SQPRLAFEFLLYSGLRCSDSC 210 F+ L +GLR S++ Sbjct: 197 LVQYTYFKLLSATGLRKSEAL 217 >gi|160883082|ref|ZP_02064085.1| hypothetical protein BACOVA_01050 [Bacteroides ovatus ATCC 8483] gi|156111554|gb|EDO13299.1| hypothetical protein BACOVA_01050 [Bacteroides ovatus ATCC 8483] Length = 293 Score = 35.8 bits (81), Expect = 9.8, Method: Compositional matrix adjust. Identities = 53/241 (21%), Positives = 94/241 (39%), Gaps = 29/241 (12%) Query: 107 GDFDYRKITTKHIRSGVES---RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER 163 G F+ ++ + IR + S + +T +S + L+S+R +K+ +RQ I+P ++ Sbjct: 40 GKFNPLEVEAELIREWIVSLMDKGYTSTSVNRKLSSLRTFYKYLLRQGETTIDPLRKIKG 99 Query: 164 PKRK---------TEGIRPWTKEDM-QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAG 213 PK K E R + D + FK G + RL E +G+R S+ Sbjct: 100 PKNKKPLPVFLKENEMNRLLDETDFGEGFK-----GCRDRLIIEVFYATGMRLSELIGLD 154 Query: 214 VQHLQNNIFSIK-TQKTGTIITVELPDGFMKLL--------AMTPIGKETFFINNDKQKM 264 + + + +K T K + D +L+ P E FFI + +++ Sbjct: 155 NKDVDFSASLLKVTGKRNKQRLIPFGDELQELMLEYINVRNETIPERSEAFFIRENGERL 214 Query: 265 NATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 K +K KS H +R AT + A + G +++ E Y Sbjct: 215 YKNLVYNLVKRNLSKVATLKKKSPHVLRHTFATTMLNNEAELGVVKELLGHESITTTEIY 274 Query: 323 T 323 T Sbjct: 275 T 275 >gi|270016302|gb|EFA12748.1| hypothetical protein TcasGA2_TC010275 [Tribolium castaneum] Length = 482 Score = 35.8 bits (81), Expect = 9.9, Method: Compositional matrix adjust. Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 2/60 (3%) Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSD 346 H +R+ SAT+ DAGA L GW++ AETY + + I+ + +IS++ S+ Sbjct: 74 HCLRRSSATLLVDAGADITALKRHGGWRSTTVAETYIDHS--LNNKIQTANKISNITQSE 131 >gi|189465402|ref|ZP_03014187.1| hypothetical protein BACINT_01751 [Bacteroides intestinalis DSM 17393] gi|189437676|gb|EDV06661.1| hypothetical protein BACINT_01751 [Bacteroides intestinalis DSM 17393] Length = 294 Score = 35.8 bits (81), Expect = 10.0, Method: Compositional matrix adjust. Identities = 47/217 (21%), Positives = 88/217 (40%), Gaps = 20/217 (9%) Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 R +T +S + L+S+R +K+ +R+ VA+NP + PK K + DM + Sbjct: 62 DRGYTSTSINRKLSSLRSFYKFLLRKGEVAVNPLQKITGPKNKKPLPAFLRESDMDRLLD 121 Query: 185 FWS-----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-----IIT 234 +G + + E +G+R S+ G+ + + S + TG +I Sbjct: 122 EVDFGEGFKGCRDHMIIEMFYATGVRLSELI--GLDNKDVDFSSSLIKVTGKRNKQRLIP 179 Query: 235 V--ELPDGFMKLLAM----TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SA 286 EL M+ + + PI FF+ + ++++ + K +K K S Sbjct: 180 FGEELKIAMMEYVDVRNEAVPIRTNAFFVRENGERLSRSIVENLVKRNLSKVVTLKKRSP 239 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 H +R AT + A + G +++ E YT Sbjct: 240 HVLRHTFATTMLNHDAELGAIKELLGHESLATTEVYT 276 Searching..................................................done Results from round 2 >gi|254780134|ref|YP_003064547.1| phage-related integrase/recombinase [Candidatus Liberibacter asiaticus str. psy62] gi|254039811|gb|ACT56607.1| phage-related integrase/recombinase [Candidatus Liberibacter asiaticus str. psy62] gi|317120848|gb|ADV02669.1| phage-related integrase/recombinase [Candidatus Liberibacter asiaticus] Length = 348 Score = 451 bits (1159), Expect = e-125, Method: Composition-based stats. Identities = 348/348 (100%), Positives = 348/348 (100%) Query: 1 MTPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY 60 MTPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY Sbjct: 1 MTPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY 60 Query: 61 INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120 INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR Sbjct: 61 INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120 Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ Sbjct: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG Sbjct: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240 Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADA 300 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADA Sbjct: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADA 300 Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348 GATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP Sbjct: 301 GATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348 >gi|240850345|ref|YP_002971738.1| phage-related integrase/recombinase [Bartonella grahamii as4aup] gi|240267468|gb|ACS51056.1| phage-related integrase/recombinase [Bartonella grahamii as4aup] Length = 347 Score = 377 bits (969), Expect = e-102, Method: Composition-based stats. Identities = 124/340 (36%), Positives = 189/340 (55%), Gaps = 5/340 (1%) Query: 7 LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHES-TFIPAYMSALTG-STPKREYINSP 64 PP + KE TRHGKII+Y R GHG+RIR+ + + F+ Y SAL + Sbjct: 5 RPPHLVKEVTRHGKIIWYVRIGHGKRIRIRGTYGTQEFVDNYKSALAELQGLILPKSKTG 64 Query: 65 RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124 + + WL+ +Y S HW SLA ++ E ++ G+ YR+I HI +GVE Sbjct: 65 KLVEGSFAWLLKQYFNSVHWHSLAKATKRQRELILMKVCDAIGNIPYREIKKSHITAGVE 124 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK-TEGIRPWTKEDMQQFK 183 RK P++A FL ++ LF WA+ QE + NP L ++RP +G WT+ED++++ Sbjct: 125 RRKEKPTAAQNFLKALNGLFNWAIDQELLENNPALGIKRPPLNNKDGFAVWTEEDVEKYY 184 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--TIITVELPDGF 241 WS GS R+ + LLY+GLR D+ R G + +++NI +KT+K+ T + + + Sbjct: 185 HHWSHGSHERVWIDVLLYTGLRRGDAVRIGWKDVKDNIIHLKTEKSKFQTDVFLPILPEL 244 Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAG 301 + L + PIG ETF + K+ F F+ AG+ KSAHG+RK +AT +A++G Sbjct: 245 AETLKIGPIGNETFICGKNGNKLVKESFGNLFREACNAAGIKKSAHGLRKLAATRAANSG 304 Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341 AT +L A +GW + A YTK ADR RL I+ +++ Sbjct: 305 ATVSQLKAIFGWTDDNMASLYTKSADRKRLAIEAIKKLQK 344 >gi|163868166|ref|YP_001609374.1| phage-related integrase/recombinase [Bartonella tribocorum CIP 105476] gi|161017821|emb|CAK01379.1| phage-related integrase/recombinase [Bartonella tribocorum CIP 105476] Length = 345 Score = 370 bits (949), Expect = e-100, Method: Composition-based stats. Identities = 119/340 (35%), Positives = 187/340 (55%), Gaps = 5/340 (1%) Query: 7 LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHES-TFIPAYMSALTG-STPKREYINSP 64 PP++ KE TRH KII+Y R GHG+RIR+ + + F+ Y SAL + Sbjct: 5 RPPYLLKEVTRHNKIIWYVRIGHGKRIRIRGTYGTQEFVDNYKSALAELQGIIPPKPKTG 64 Query: 65 RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124 + + WL+ +Y S+ W LA ++ E ++ G+ Y+ I KHI +GVE Sbjct: 65 KLIEGSFAWLLKQYFNSSDWYCLAKATKRQKELILMKVCDSIGNIPYQAIEKKHIVAGVE 124 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK-TEGIRPWTKEDMQQFK 183 RK TP+ A FL ++ LF WA+ Q + NP + V+RP +G WT++D++++ Sbjct: 125 RRKETPAMARNFLKALNGLFNWAIDQGLLESNPTVGVKRPALNNKDGFAVWTEDDVEKYY 184 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--TIITVELPDGF 241 WS G+ R+ + LLY+GLR D+ R G +++++NI +KT+K+ T + + + Sbjct: 185 QRWSHGTHERVWIDVLLYTGLRRGDAVRIGWKNVKDNIIHLKTEKSKYQTDVFLPILPEL 244 Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAG 301 + L + PIG ETF + QK F F+ AG+ KSAHG+RK +AT +A++G Sbjct: 245 AETLKIGPIGNETFICSKTNQKFIKESFGNAFRDACNAAGIKKSAHGLRKLAATRAANSG 304 Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341 AT +L A +GW A YTK ADR RL ++ +++ Sbjct: 305 ATVSQLKAIFGWTEDQMASLYTKSADRKRLALEAIKKLQK 344 >gi|319405810|emb|CBI79435.1| phage-related integrase/recombinase [Bartonella sp. AR 15-3] Length = 345 Score = 368 bits (944), Expect = e-99, Method: Composition-based stats. Identities = 118/344 (34%), Positives = 188/344 (54%), Gaps = 6/344 (1%) Query: 3 PSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHE-STFIPAYMSALTG-STPKREY 60 P R PP + KE TRHGK+I+Y R GHG+R+R+ + FI Y A+ Sbjct: 2 PKQR-PPHLVKEITRHGKVIWYVRIGHGQRVRIYGTYGAQEFIDNYKRAIAQLQGLILPK 60 Query: 61 INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120 + + WL+ +Y S +W SLA ++ E ++ G Y+ I KHI Sbjct: 61 SKPGKLVEGSFAWLLKQYFNSVNWYSLAKTTQRQKELILMKVCDSVGSIPYKAINKKHII 120 Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK-TEGIRPWTKEDM 179 +GVE RK TP+SA FL ++ LF WA+ Q + NP L+++RP K +G WT+ED+ Sbjct: 121 AGVERRKETPASARNFLKALNGLFTWAIEQNLLDENPTLNIKRPPLKNKDGFPAWTEEDI 180 Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--TIITVEL 237 +++ W G+ R+ + +LY+GLR D+ R G + +++NI +KT+K+ T + + + Sbjct: 181 EKYYKQWPHGTHERVWIDVILYTGLRRGDAMRIGWKDVKDNIIHLKTEKSKFQTDVFLPI 240 Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATIS 297 + L + PIG ETF +K+ F F+ A + KSAHG+RK +AT + Sbjct: 241 LPELAETLKIGPIGDETFICGKGNKKLTKESFGNLFREACNTASIKKSAHGLRKLAATRA 300 Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341 A++GAT +L A +GW + A YTK ADR +L +++ +++ Sbjct: 301 ANSGATVSQLKAIFGWTNDNMASLYTKSADRKKLALESIKKLQK 344 >gi|159043537|ref|YP_001532331.1| integrase family protein [Dinoroseobacter shibae DFL 12] gi|157911297|gb|ABV92730.1| integrase family protein [Dinoroseobacter shibae DFL 12] Length = 370 Score = 356 bits (913), Expect = 3e-96, Method: Composition-based stats. Identities = 103/350 (29%), Positives = 173/350 (49%), Gaps = 8/350 (2%) Query: 4 SLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPY-PHESTFIPAYMSALTGSTPKREYIN 62 S+RL V ++ RHG + Y R+ ++RL P F+ Y +A+ G+TP+ + Sbjct: 12 SIRL-KHVIEDTDRHGNVRIYLRRPGHLKVRLRSQPGTEDFLAEYRAAMMGATPRAPTVP 70 Query: 63 SPRK-KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121 R+ + KWL +Y SA + L+ ++ D+I KSG Y + +H+R Sbjct: 71 LDRRGSKGSFKWLCEQYYVSAEYQRLSGRTKYVRRGILDRICEKSGSKPYALMEPRHVRR 130 Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 + P +A F+ ++R ++ +AV E NP V K K +G WT E+++Q Sbjct: 131 MRDEMADRPEAANGFVKALRQVYSFAVEYELAQRNPARDVPYLKAKGDGFHSWTMEEVRQ 190 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI----ITVEL 237 F+ GS+PRLA +LY+G R SD R G QH+++ ++ K +++ + Sbjct: 191 FEEHHPIGSKPRLALALMLYTGQRRSDIVRLGPQHIKDGWITLTQAKNRDRKPVTLSIPV 250 Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATI 296 +L TP G F + + + F WF+ + +AG+ + SAHG+RK A + Sbjct: 251 LPELKAVLDATPTGNLAFLVTAFGKPFTSNGFGNWFRKQCDEAGLKHCSAHGLRKAGAAL 310 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSD 346 +A+ GAT +LMA +GW T+ +A YT+ A + L + +S D Sbjct: 311 AAENGATERQLMAIFGWTTMKEASRYTRAARQRVLAASGMKLLSRGGDGP 360 >gi|319408665|emb|CBI82320.1| phage-related integrase/recombinase [Bartonella schoenbuchensis R1] Length = 347 Score = 353 bits (906), Expect = 2e-95, Method: Composition-based stats. Identities = 122/344 (35%), Positives = 182/344 (52%), Gaps = 6/344 (1%) Query: 3 PSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHES-TFIPAYMSALTG-STPKREY 60 P R PP + KE TRHGK I+Y R HG R R+ + + F+ Y AL+ Sbjct: 2 PKQR-PPHLVKEITRHGKTIWYVRISHGPRRRVHGVYGTQEFVDDYKKALSELQGYTLPK 60 Query: 61 INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120 S + + WL+ +Y S W L+ ++ E ++ GD Y+ I HI Sbjct: 61 SKSDKFVEGSFIWLLKQYFDSVTWHELSHVTKRQKELILMKVSDAIGDIPYKAIKKDHIV 120 Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK-TEGIRPWTKEDM 179 +GVE RK TP++A FL ++ LFKWA+ Q + NP V+RP K EG WT+ED+ Sbjct: 121 AGVERRKETPATARNFLKAVNGLFKWAIEQGLLEDNPAAGVKRPSLKNKEGFPAWTEEDI 180 Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--TIITVEL 237 ++ W G+ R+ + LLY+GLR D R G + + +NI +KT+K+ T + + + Sbjct: 181 NKYYQQWPLGTHERVWLDVLLYTGLRRGDVVRIGWKDVTDNIIHLKTEKSKFQTDVFLPI 240 Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATIS 297 K L PIG ETF +K+ F F+ +AG+ KSAHG+RK +AT + Sbjct: 241 LPELTKTLETGPIGDETFICGKGGKKLTKETFGNLFRDACNEAGIKKSAHGLRKLAATRA 300 Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341 A+AGAT +L A +GW + A YTK ADR RL +++ +++ Sbjct: 301 ANAGATVSQLKAIFGWTDDEMASLYTKTADRKRLALESIKKLQK 344 >gi|89055356|ref|YP_510807.1| phage integrase [Jannaschia sp. CCS1] gi|88864905|gb|ABD55782.1| phage integrase [Jannaschia sp. CCS1] Length = 370 Score = 351 bits (900), Expect = 1e-94, Method: Composition-based stats. Identities = 101/350 (28%), Positives = 169/350 (48%), Gaps = 8/350 (2%) Query: 4 SLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPY-PHESTFIPAYMSALTGSTPKREYIN 62 S+RL V ++ RHG + Y R+ ++RL P F+ Y A+ G+TP+ Sbjct: 12 SIRL-KHVIEDTDRHGNVRLYLRRPGHLKVRLRSQPGTEDFLAEYRVAMMGATPRAPAGP 70 Query: 63 SPRK-KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121 R+ + KWL +Y SA + L+ ++ D+I K+G Y + +H+R Sbjct: 71 LERRGSKGSFKWLCEQYYVSAEYQRLSGRTKYVRRGILDRICEKNGSKPYALMEPRHVRR 130 Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 + P +A F+ ++R ++ +AV E NP V K K +G WT E+++Q Sbjct: 131 MRDEMADRPEAANGFVKALRQVYAFAVEYELAQRNPARDVPYLKAKGDGFHSWTMEEVRQ 190 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI----ITVEL 237 F+ GS+PRLA +LY+G R SD R G QH+++ ++ K +++ + Sbjct: 191 FEDHHPIGSKPRLALALMLYTGQRRSDIVRLGPQHIKDGWITMTQAKNRDRKPVTLSIPV 250 Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATI 296 +L TP G F + + + F WF+ + AG+ + SAHG+RK A + Sbjct: 251 LLELKAVLDATPTGNLAFLVTTFGKPFTSNGFGNWFRKQCDVAGLKHCSAHGLRKAGAAL 310 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSD 346 +A+ GAT +LMA +GW T+ +A YT+ A + L + +S Sbjct: 311 AAENGATERQLMAIFGWSTMKEASRYTRAARQKVLAASGMKLLSRDAGGP 360 >gi|319408877|emb|CBI82534.1| phage-related integrase/recombinase [Bartonella schoenbuchensis R1] Length = 347 Score = 351 bits (900), Expect = 1e-94, Method: Composition-based stats. Identities = 122/340 (35%), Positives = 181/340 (53%), Gaps = 5/340 (1%) Query: 7 LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHES-TFIPAYMSALTG-STPKREYINSP 64 PP + KE TRHGK I+Y R GHG+R R+ + + F+ Y AL+ K Sbjct: 5 RPPHLVKEITRHGKTIWYVRIGHGQRRRVHGVYGTQEFVDDYKKALSELQGYKLPKSKPG 64 Query: 65 RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124 + + WL+ +Y S W +LA ++ E ++ GD Y+ I HI +GVE Sbjct: 65 KLVEGSFIWLLKQYFNSLTWHNLAHATKRQKELILMKVSDAIGDIPYKAIKKSHIIAGVE 124 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK-TEGIRPWTKEDMQQFK 183 RK TP++A FL ++ LFKWA+ Q + NP V+RP K +G W +ED+ ++ Sbjct: 125 RRKETPANARNFLKAVNSLFKWAIEQGLLEDNPAAGVKRPSLKNKDGFPAWIEEDINKYY 184 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--TIITVELPDGF 241 W G+ R+ + LLY+GLR D R G + + +N+ +KT+K+ T + + + Sbjct: 185 QQWPLGTHERVWVDVLLYTGLRRGDVVRIGWKDVTDNVIHLKTEKSKFQTDVFLPILPEL 244 Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAG 301 K L P+G ETF +K+ F FK +AGV KSAHG+RK +AT +A+AG Sbjct: 245 AKTLETGPVGNETFICGKGGKKLTKETFGNLFKNACNEAGVKKSAHGLRKLAATRAANAG 304 Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341 AT +L A +GW D A YTK ADR RL I+ +++ Sbjct: 305 ATVAQLKAIFGWTEDDMASLYTKTADRKRLAIEAIKKLQK 344 >gi|49475466|ref|YP_033507.1| integrase /recombinase [Bartonella henselae str. Houston-1] gi|49238272|emb|CAF27486.1| Integrase /recombinase [Bartonella henselae str. Houston-1] Length = 345 Score = 348 bits (894), Expect = 6e-94, Method: Composition-based stats. Identities = 115/341 (33%), Positives = 188/341 (55%), Gaps = 5/341 (1%) Query: 6 RLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHES-TFIPAYMSAL-TGSTPKREYINS 63 R PP + KE TRHGK+++Y R GHG R R+ + + F+ +Y A+ + + Sbjct: 4 RRPPHLVKETTRHGKVVWYVRIGHGPRYRIEGTYGTQEFVDSYTLAIKQAQNGTPKRMTQ 63 Query: 64 PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123 R + WL+ +Y +S W + + +++ + + + G+ Y+ I +HI V Sbjct: 64 TRLTEGSFDWLLHQYLQSMQWHNQSESTKKVKYRILNNVSKHIGNHAYKSIEKRHILDAV 123 Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK-RKTEGIRPWTKEDMQQF 182 + R+ TP++A FLTS+ LF WAV + NP L+++ PK +EG++PW +ED+ ++ Sbjct: 124 DRRRATPAAAKHFLTSLNGLFNWAVDNALLNRNPALNIKAPKSLNSEGLQPWLEEDIDKY 183 Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT--GTIITVELPDG 240 WS GS R+ + LLY+GLR D+ R G + +++NI +KT+K+ T + + + Sbjct: 184 YHHWSHGSHERVWIDVLLYTGLRRGDAVRIGWKDVKDNIIHLKTEKSQFKTDVFLPILPE 243 Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADA 300 + L + PIG ETF K+ F F+ AG+ KSAHG+RK +AT +A+A Sbjct: 244 LTETLQIGPIGDETFICGKSGNKLVKESFGNLFREACNAAGIKKSAHGLRKLAATRAANA 303 Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341 GAT ++ A +GW A YTK ADR RL I+ +++ Sbjct: 304 GATVSQMKALFGWTEDKMASLYTKTADRKRLAIEAIKKLQK 344 >gi|319408072|emb|CBI81725.1| phage-related integrase/recombinase [Bartonella schoenbuchensis R1] Length = 347 Score = 347 bits (891), Expect = 1e-93, Method: Composition-based stats. Identities = 120/340 (35%), Positives = 180/340 (52%), Gaps = 5/340 (1%) Query: 7 LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHES-TFIPAYMSALTG-STPKREYINSP 64 PP + KE TRHGK I+Y R GHG+R R+ + + F+ Y AL+ K Sbjct: 5 RPPHLVKEITRHGKTIWYVRIGHGQRRRVHGVYGTQEFVDDYKKALSELQGYKLPKSKPG 64 Query: 65 RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124 + + WL+ +Y S W +LA ++ E ++ GD Y+ I HI +GVE Sbjct: 65 KLVEGSFIWLLKQYFNSLTWHNLAHATKRQKELILMKVSDAIGDIPYKAIKKSHIIAGVE 124 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK-TEGIRPWTKEDMQQFK 183 RK TP++A FL ++ LFKWA+ Q + NP V+RP K +G W +ED+ ++ Sbjct: 125 RRKETPANARNFLKAVNSLFKWAIEQGLLEDNPAAGVKRPSLKNKDGFPAWIEEDINKYY 184 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--TIITVELPDGF 241 W G+ R+ + LLY+GLR D R G + + +N+ +KT+K+ T + + + Sbjct: 185 QQWPLGTHERVWVDVLLYTGLRRGDVVRIGWKDVTDNVIHLKTEKSKFQTDVFLPILPEL 244 Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAG 301 K L PIG ETF +K+ F F+ +AGV KSAHG+RK +AT +A+AG Sbjct: 245 TKTLETGPIGDETFICGKGGKKLTKEAFGNLFRDACNEAGVKKSAHGLRKLAATRAANAG 304 Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341 AT +L A +GW A YTK ADR RL +++ ++ Sbjct: 305 ATVAQLKAIFGWTEDRMASLYTKTADRKRLALESIEKLQK 344 >gi|319409101|emb|CBI82745.1| phage-related integrase/recombinase [Bartonella schoenbuchensis R1] Length = 347 Score = 347 bits (889), Expect = 2e-93, Method: Composition-based stats. Identities = 120/340 (35%), Positives = 181/340 (53%), Gaps = 5/340 (1%) Query: 7 LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHES-TFIPAYMSAL-TGSTPKREYINSP 64 PP + KE TRHGK I+Y R GHG+R R+ + + F+ Y AL I Sbjct: 5 RPPHLIKEITRHGKTIWYVRIGHGQRYRVYGTYGTQEFVDNYTLALKEAQNGLPRQIKRT 64 Query: 65 RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124 R + WL+ +Y +S W + A +++ + + I + G Y+ I +HI VE Sbjct: 65 RLMEGSFDWLMHQYLQSMQWHNQAESTKKVKQRILNNISQHIGTCSYKSIEKQHILDAVE 124 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR-KTEGIRPWTKEDMQQFK 183 R+ TP++A FLT++ LF WAV + NP +++ PK TEG PW +ED+ ++ Sbjct: 125 RRRETPAAARHFLTALNGLFNWAVDNSLLHRNPAFNIKPPKSFNTEGFSPWLEEDIDKYH 184 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--TIITVELPDGF 241 W G+ R+ + LLY+GLR D R G + + +NI +KT+K+ T + + + Sbjct: 185 QRWPLGTHERVWIDVLLYTGLRRGDVVRVGWKDVTDNIIHLKTEKSKFQTDVFLPILPEL 244 Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAG 301 K L PIG ETF + +K+ F F+ AG+ KSAHG+RK +AT +A+AG Sbjct: 245 AKTLEAGPIGNETFICGKEGKKLTKESFGNLFRKACNAAGIKKSAHGLRKLAATRAANAG 304 Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341 AT +L A +GW D A YTK ADR RL I+ +++ Sbjct: 305 ATVSQLKAIFGWTEDDMASLYTKTADRKRLAIEAIKKLQK 344 >gi|319406688|emb|CBI80325.1| phage-related integrase/recombinase [Bartonella sp. 1-1C] Length = 349 Score = 347 bits (889), Expect = 2e-93, Method: Composition-based stats. Identities = 118/348 (33%), Positives = 188/348 (54%), Gaps = 9/348 (2%) Query: 1 MTPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHES-TFIPAYMSALT---GSTP 56 MT PP + K+ T+HGKI++Y R GHG+R R+ + + FI Y S+L G P Sbjct: 1 MTMPKPRPPHLVKQITQHGKIVWYVRIGHGQRRRVHGTYGTQEFIDNYKSSLAELHGIIP 60 Query: 57 KREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITT 116 + + + WL+ +Y S +W +LA ++ E ++ G+ YR+I Sbjct: 61 PKPKPG--KLIEGSFAWLLKQYFNSINWHNLAKGTKRQRELILMKVYDTIGNIPYREIKK 118 Query: 117 KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK-TEGIRPWT 175 HI +GVE RK PS+A FL ++ LF WA+ Q + NP + V++P +G WT Sbjct: 119 AHIIAGVERRKDKPSTAQNFLKALNGLFNWAIEQGLLENNPTVGVKKPALNNKDGFAAWT 178 Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--TII 233 +ED++++ WS G+ R+ LLY+GLR D+ R G + ++NI +KT+K+ T + Sbjct: 179 EEDVEKYYQQWSVGTYERVWINVLLYTGLRRGDAVRIGWKDTKDNIIHLKTEKSKFQTDV 238 Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFS 293 + + + L + P+G+ETF K+ F F+ AG+ KSAHG+RK + Sbjct: 239 FLPILPELAETLKIGPVGEETFICGKSGNKLAKESFGNLFREACNAAGIKKSAHGLRKLA 298 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341 AT +A+AGAT +L A +GW A YTK ADR +L ++ +++ Sbjct: 299 ATRAANAGATVSQLKAIFGWTEDKMASLYTKSADRKKLALEAIKKLQK 346 >gi|240850538|ref|YP_002971937.1| phage-related integrase/recombinase [Bartonella grahamii as4aup] gi|240267661|gb|ACS51249.1| phage-related integrase/recombinase [Bartonella grahamii as4aup] Length = 345 Score = 345 bits (885), Expect = 7e-93, Method: Composition-based stats. Identities = 115/341 (33%), Positives = 185/341 (54%), Gaps = 5/341 (1%) Query: 6 RLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHES-TFIPAYMSAL-TGSTPKREYINS 63 R PP + +ERTRHGK+I+Y R GHG R R+ + + F+ Y A+ + Sbjct: 4 RRPPHLVRERTRHGKVIWYVRIGHGPRFRIEGTYGTQEFVDNYTLAIKQAQNGSSKTKRR 63 Query: 64 PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123 R + WL+ +Y +S W + + +++ + + + GD Y+ I +HI V Sbjct: 64 TRLTEGSFDWLLHQYLQSMQWHNQSESTKKVKYRILNNVSKHIGDRAYKSINKQHILEAV 123 Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK-RKTEGIRPWTKEDMQQF 182 + R+ TP++A FLTS+ LF WAV + NP +++ PK +EG+ PW +ED+ ++ Sbjct: 124 DRRRETPAAAKHFLTSLNGLFNWAVDNALLNRNPAFNIKAPKSLNSEGLLPWREEDIDKY 183 Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT--GTIITVELPDG 240 WS G+ R+ + LLY+GLR D+ R G + +++NI +KT+K+ T + + + Sbjct: 184 YHRWSHGTHERVWIDVLLYTGLRRGDAVRIGWKDVKDNIIYLKTEKSQFKTDVFLPILPE 243 Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADA 300 + L + PIG ETF K+ F F+ AG+ KSAHG+RK +AT +A+A Sbjct: 244 LEETLKIGPIGNETFICGKGGNKLVKESFGNLFREACNAAGIKKSAHGLRKLAATRAANA 303 Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341 GAT ++ A +GW A YTK ADR RL I+ +++ Sbjct: 304 GATVSQMKALFGWTEDKMASLYTKTADRKRLAIEAIKKLQK 344 >gi|163867673|ref|YP_001608874.1| phage-related integrase/recombinase [Bartonella tribocorum CIP 105476] gi|161017321|emb|CAK00879.1| phage-related integrase/recombinase [Bartonella tribocorum CIP 105476] Length = 345 Score = 344 bits (883), Expect = 1e-92, Method: Composition-based stats. Identities = 115/341 (33%), Positives = 181/341 (53%), Gaps = 5/341 (1%) Query: 6 RLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHES-TFIPAYMSAL-TGSTPKREYINS 63 R PP++ ERTRHGKII+Y R GHG R R+ + + F+ Y AL + Sbjct: 4 RRPPYLVCERTRHGKIIWYVRIGHGPRFRIEGTYGTQEFVDNYTLALKQAQNGTSKKRKQ 63 Query: 64 PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123 R + WL+ +Y +S W + + +++ + + + G+ Y+ I HI V Sbjct: 64 TRLVEGSFDWLLHQYLRSIQWHNQSESTKKVKYRILNNVSKHIGERAYKSIGKHHILDAV 123 Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR-KTEGIRPWTKEDMQQF 182 + R+ TP++A FLTS+ LF WAV + NP +++ PK EG PW +ED++++ Sbjct: 124 DRRRATPAAAKHFLTSLNGLFNWAVDNALLNRNPAFNIKPPKSFNAEGFTPWLEEDVEKY 183 Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT--GTIITVELPDG 240 WS + R+ + LLY+GLR D+ R G + +++NI +KT+K+ T + + + Sbjct: 184 YHHWSVDTHERVWVDVLLYTGLRRGDAVRIGWKDVKDNIIHLKTEKSQFKTDVFLPILPE 243 Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADA 300 K L P+G ETF K+ F F+ AG+ KSAHG+RK +AT +A+A Sbjct: 244 LAKTLEAGPVGDETFICGKGGNKLVKESFGNLFREACNAAGIKKSAHGLRKLAATRAANA 303 Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341 GAT ++ A +GW A YTK ADR RL I+ +++ Sbjct: 304 GATVSQMKALFGWSEDKMASLYTKTADRKRLAIEAIKKLQK 344 >gi|307942454|ref|ZP_07657805.1| integrase family protein [Roseibium sp. TrichSKD4] gi|307774740|gb|EFO33950.1| integrase family protein [Roseibium sp. TrichSKD4] Length = 356 Score = 342 bits (876), Expect = 7e-92, Method: Composition-based stats. Identities = 119/352 (33%), Positives = 183/352 (51%), Gaps = 12/352 (3%) Query: 3 PSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHE----STFIPAYMSALTGSTPKR 58 P RLP V E++RHG++ Y+FR GHG RIRLP + S F+ AY SAL G+ P Sbjct: 2 PKSRLP-HVVVEKSRHGRVKYFFRIGHGPRIRLPDDYSTAQASDFMQAYRSALAGTPPPL 60 Query: 59 EYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH 118 S R TL WL +Y++SA + SL+ ++ + + I+ KSG R IT + Sbjct: 61 PKARS-RHAQNTLGWLFDQYQQSAKFKSLSEGTQRARANLIKGIVSKSGKAQLRDITERA 119 Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEY----VAINPCLSVERPKRKTEGIRPW 174 +R G E R TP +A FL +M+ F W + + +P +V++ KTEG W Sbjct: 120 VRQGRERRSATPEAANNFLKTMKSAFAWGIDSGLLDGIIETDPTANVKKITTKTEGFHTW 179 Query: 175 TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT 234 T ++++ ++S G+ RLA + L+Y+GLR D + G QH+++ + + KT K G + Sbjct: 180 TVDEIEAYESTHDIGTTARLALDLLIYTGLRRGDVVKVGRQHVKDGVLNYKTGKNGEWVH 239 Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKMNA-TQFSIWFKAKATKAGVNK-SAHGVRKF 292 + + + +P TF + ++ F WF + +AGV K AHG+RK Sbjct: 240 LPILPALQNSIDASPTNDLTFLQTEKGKPFSSAASFGNWFAKRCLEAGVEKGRAHGLRKA 299 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344 A ++A+ GAT +LMA +GW T D A YTK A R +L + + Sbjct: 300 GAVLAAERGATTSQLMALFGWTTEDMATLYTKRASRSKLSATAIDLLDRSEN 351 >gi|222107069|ref|YP_002547860.1| Integrase [Agrobacterium vitis S4] gi|221738248|gb|ACM39144.1| Integrase [Agrobacterium vitis S4] Length = 344 Score = 338 bits (866), Expect = 1e-90, Method: Composition-based stats. Identities = 86/339 (25%), Positives = 162/339 (47%), Gaps = 6/339 (1%) Query: 6 RLPPFVTKERTRHGKIIYYFRKGHGRRIRLPY-PHESTFIPAYMSALTGSTPKREYINSP 64 R P + RHGKI +Y+R+ L P F+ +Y A+ G ++ + Sbjct: 3 RPPKYCQGFEDRHGKIRWYYRRKGFPIKPLSGLPWSPEFMASYEKAMAG---EKIEVGKS 59 Query: 65 RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124 + P T+ L+ Y K++ + L+ +++ ++ ++ + G + ++++ + Sbjct: 60 KSAPGTVSALVVSYYKTSDFQRLSESTKTTYRGIIERFREEHGAKRVHHMQAQNVKKIIG 119 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 + TP++A L + +L AV ++ +P V++ + K+EG W + ++QF + Sbjct: 120 EKAATPAAANNLLRIIHILMLHAVDLQWRRDDPTKDVKKIRHKSEGFLTWEEHHIEQFTA 179 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244 + G++ LA LLY+G R SD R G QH+++ SI QKTG ++ + F + Sbjct: 180 YHKPGTRAHLALSLLLYTGQRRSDVVRMGRQHVRDGWISIVQQKTGQLVEIPFHAAFKDV 239 Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGA 302 L P+ TF + F+ WF+ +AG+ S HG+RK + A+AG Sbjct: 240 LNALPLKNMTFLTTAQGKPFTPAGFTNWFRDMTKEAGLPDKLSPHGLRKAACRRLAEAGC 299 Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341 T H++MA G +++D+ YT A R L + + + Sbjct: 300 TPHQIMAISGHQSLDEVTRYTVAASRRELATQAAPHLQG 338 >gi|315497345|ref|YP_004086149.1| integrase family protein [Asticcacaulis excentricus CB 48] gi|315415357|gb|ADU11998.1| integrase family protein [Asticcacaulis excentricus CB 48] Length = 356 Score = 333 bits (853), Expect = 3e-89, Method: Composition-based stats. Identities = 108/345 (31%), Positives = 177/345 (51%), Gaps = 13/345 (3%) Query: 9 PFVTKERTRHGKIIYYFRKGHGRRIRLPY-PHESTFIPAYMSALTGSTPKREYINSPRKK 67 ++ + RHG +YFR+ +++ LP P F+ AY +AL+GS K I + ++K Sbjct: 9 AYINRYTDRHGNTRHYFRRPGHKQVALPGKPGSKEFMAAYQAALSGSEGK-PRIGASKEK 67 Query: 68 PTTLKWLISEYRKSAHWGS-LAVNSRISFESYFDQIIR-------KSGDFDYRKITTKHI 119 P + L+S Y SA + + L S+ ++ +Q K+GD + H+ Sbjct: 68 PGSFGALLSVYYDSAKFRNELKPQSQKAYRILLEQFRELEVTPGVKAGDCLVKDFRPAHL 127 Query: 120 RSG-VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE-GIRPWTKE 177 ++ P A + +R +FK A+R E + NP VE PK K++ GI W+ Sbjct: 128 NKLVIDGLADRPGQAKNMIKCLRGVFKCAIRNEMIDSNPAREVETPKAKSKDGIPAWSDA 187 Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL 237 D++ F W G++ RLA LLY+G R SD R G QH++ ++ KT + + + Sbjct: 188 DIEAFCKHWPSGTKQRLALALLLYTGQRRSDVARMGRQHVREGRIHVRQMKTDARLAIRI 247 Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATI 296 K L + P G+ TF + + + FSIWFK +A AGV ++SAHG+RK + + Sbjct: 248 HSELQKELDLVPPGQMTFMLTEWGKPFSLAGFSIWFKKQAEDAGVQDRSAHGLRKAAGRM 307 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341 A+AG TA ++MA G +++ +AE YT+ AD+ +LG + Sbjct: 308 LAEAGCTAKQIMAILGHQSMTEAERYTRTADQEKLGDGAMELFEA 352 >gi|85716638|ref|ZP_01047608.1| Integrase /recombinase [Nitrobacter sp. Nb-311A] gi|85696639|gb|EAQ34527.1| Integrase /recombinase [Nitrobacter sp. Nb-311A] Length = 371 Score = 326 bits (837), Expect = 2e-87, Method: Composition-based stats. Identities = 120/350 (34%), Positives = 184/350 (52%), Gaps = 11/350 (3%) Query: 6 RLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHEST-FIPAYMSALTGSTPKREYINSP 64 R PP++ ERTRHG ++Y R+ HG RIRL + S F Y +AL + + S Sbjct: 4 RRPPYLHSERTRHGARVWYVRRHHGGRIRLRADYGSAAFWQEYRAALDAAPA---LVASA 60 Query: 65 RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124 K TLKW + YR S+ W +L++ +R E+ F ++I G +I IR G E Sbjct: 61 IGKSGTLKWALDRYRASSAWATLSLATRRQRENIFRRVIETGGKTPLTEIDDDVIRDGRE 120 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP--KRKTEGIRPWTKEDMQQF 182 R TP A F+ +MR W V ++ + NP V+ +G WT+ ++ +F Sbjct: 121 RRAATPHQANSFIKAMRAFCAWCVEEKLMTKNPTSGVKLLTGPNDADGFHTWTQAELDRF 180 Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK-----TGTIITVEL 237 ++ W G++ RLAF+ LLY+GLR D+ R G QH+++ + SI+T+K G ++ + + Sbjct: 181 EARWKVGTRERLAFDVLLYTGLRRGDAVRVGRQHVKDGVISIRTEKHARGKAGELVAIPI 240 Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATIS 297 LA TP G+ F IN Q F WF+ +A SAHG+RK AT + Sbjct: 241 LAPLAASLAATPTGELEFLINERGQPWRKESFGNWFRDVCREANCPGSAHGLRKAGATRA 300 Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347 A+ GA+ +LMA +GW T A+ YT+ ADR RL ++ + V +++ Sbjct: 301 AEKGASERQLMAIFGWTTGKMAQHYTRSADRARLARDAAQLLLPVQATNE 350 >gi|323136183|ref|ZP_08071265.1| integrase family protein [Methylocystis sp. ATCC 49242] gi|322398257|gb|EFY00777.1| integrase family protein [Methylocystis sp. ATCC 49242] Length = 341 Score = 325 bits (832), Expect = 8e-87, Method: Composition-based stats. Identities = 124/337 (36%), Positives = 193/337 (57%), Gaps = 5/337 (1%) Query: 7 LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHEST-FIPAYMSALTGSTPKREYINSPR 65 PP++ E +RHG+ ++YFRKG G R+RLP + S F AY +A+ G ++ Sbjct: 5 RPPYLHSEISRHGRRVWYFRKGKGPRVRLPDAYGSDDFWSAYHAAMAGEVAPKKPAG--- 61 Query: 66 KKPTTLKWLISEYR-KSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124 K +L+WLI +YR +S+HW LA+ +R E F +I +GD Y +T I G + Sbjct: 62 AKSGSLRWLIDKYRAESSHWSQLALETRQRRERIFQAVIEAAGDKAYTAVTRAKIVEGRD 121 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 R+ TPS+A FL + LF WA ++VA NPC V+ ++T+G RPWT+ D+++F++ Sbjct: 122 RRRATPSAANHFLKARAGLFAWAFEADHVATNPCEGVKMLSQRTDGHRPWTEADIERFEA 181 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244 W G++ RLA L+Y+GLR D + G QH+++ + S++T+KT T + + + ++ Sbjct: 182 RWPVGTRERLALAILMYTGLRRGDVVKLGRQHVRDGVISLRTEKTNTPVHLPMLPALAEI 241 Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATA 304 + +P G F + + A FS F AGV+ S HG+RK +AT +A+AGAT Sbjct: 242 IDKSPTGDLNFIATKSGRPICADAFSAMFLCACRAAGVDASPHGLRKVAATRAANAGATV 301 Query: 305 HELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341 EL A +GW A YTK ADR RL + +++ Sbjct: 302 AELEALFGWTGGQMASHYTKEADRARLARQAIAKLAK 338 >gi|218528999|ref|YP_002419815.1| integrase family protein [Methylobacterium chloromethanicum CM4] gi|218521302|gb|ACK81887.1| integrase family protein [Methylobacterium chloromethanicum CM4] Length = 367 Score = 323 bits (828), Expect = 2e-86, Method: Composition-based stats. Identities = 93/357 (26%), Positives = 160/357 (44%), Gaps = 13/357 (3%) Query: 4 SLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPY-PHESTFIPAYMSALTGSTPKREYIN 62 + LP +V + RH + YYFR+ ++RL P F+ Y L G P+R+ + Sbjct: 7 TAELPEYVVSDTDRHDNVRYYFRRRPAPKVRLEGIPGSEAFMNKYYDCLDGRIPERKSRS 66 Query: 63 SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG 122 +P P + L Y S + SL V++R D+I G + +H+R+ Sbjct: 67 AP-AAPGSFAALRLAYLGSPEFKSLDVSTRAWQRRALDEISEAHGTKRVAMMQARHVRTL 125 Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 ++ TP++A L +++ LFKWA + +P +V+ K +G PW+ +++ + Sbjct: 126 RNGKRETPAAANTMLKALKALFKWANENGRASSDPTRNVDFLKYAKKGFHPWSPSEVEAY 185 Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI----ITVELP 238 ++ G+ RLA E LLY+ R D R G +L F K I + + Sbjct: 186 EAAHLVGTTARLALELLLYTAGRREDVVRFGPHNLAAGRFRFVQGKNEDRAPVLIDIPVH 245 Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATIS 297 + +A F + + + F FK +AG+ + SAHG RK +A Sbjct: 246 PDLAEAIAAAQPSGAIFILTHYGRPFTPNGFGNRFKKWCIQAGLPHCSAHGCRKAAAARL 305 Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS------RRISSVVDSDDP 348 A GATAH++M+ G +++ + E YT+ A R ++ R S + ++ P Sbjct: 306 ATRGATAHQIMSVTGHQSLAEVERYTRSALRAQMADTAMALLPDRRSAGSTIPANRP 362 >gi|92115952|ref|YP_575681.1| phage integrase [Nitrobacter hamburgensis X14] gi|91798846|gb|ABE61221.1| phage integrase [Nitrobacter hamburgensis X14] Length = 389 Score = 323 bits (827), Expect = 3e-86, Method: Composition-based stats. Identities = 100/340 (29%), Positives = 160/340 (47%), Gaps = 8/340 (2%) Query: 8 PPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHE-STFIPAYMSALTGSTPKREYINSPRK 66 PP +TK+ RHG I +Y R G ++RL + F AY L G+ + Sbjct: 6 PPRLTKDTDRHGNIRWYVRTLDGPKVRLRDEYGTPAFWQAYRDVLAGNIKPPPPSTRIER 65 Query: 67 KP---TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123 KP +L WL S+Y SA + L +R + D I G+ Y+ + KHIR+ Sbjct: 66 KPFDKASLAWLCSQYYTSAEYKQLNERTRYVRRATLDHICAADGEKPYKLLLPKHIRARR 125 Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 ++R P SA + ++R +F +A+ +YVA+NP +V K K +G W+ E++++F+ Sbjct: 126 DARADRPESANGMIKALRQVFAFAIENDYVALNPAQAVPYLKAKGDGHHSWSLEEIEKFE 185 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI----ITVELPD 239 G+ RLA LLY+G R SD G ++ K + + + Sbjct: 186 KKHPIGTMARLALALLLYTGQRRSDVIVLGPALVREGWLHFTQFKGREHKPITLDIPIIP 245 Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISAD 299 +++ T GK+T+ +N + A F WF + A V AHG+RK +A+ A+ Sbjct: 246 ELQRVIDATACGKDTYLLNGLGRPFTAAGFGNWFHDRCKDAKVPGRAHGLRKAAASRLAE 305 Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339 G++ HE+MA G T + YTK A + L R+ Sbjct: 306 LGSSEHEIMAITGHTTSKEVMRYTKAARQKVLAAAAMARL 345 >gi|300021643|ref|YP_003754254.1| integrase family protein [Hyphomicrobium denitrificans ATCC 51888] gi|299523464|gb|ADJ21933.1| integrase family protein [Hyphomicrobium denitrificans ATCC 51888] Length = 716 Score = 321 bits (824), Expect = 7e-86, Method: Composition-based stats. Identities = 89/354 (25%), Positives = 163/354 (46%), Gaps = 18/354 (5%) Query: 10 FVTKERTRHGKIIYYFRKGHGRRIRLPY-PHESTFIPAYMSAL---TGSTPKREYINSPR 65 ++ ++ RHG + YFR R+IRL P F Y S + K S Sbjct: 13 YLVEDTDRHGNVRIYFRYPGYRKIRLRERPTSPEFAERYSSLIEQFATGCYKEAEKTSVS 72 Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII---------RKSGDFDYRKITT 116 P TL WL++ +R S + +L +++ + + ++ +F +I Sbjct: 73 AVPGTLGWLVTAFRASKDFSNLDPSTQRTRARVLESMLNEPIFQEAAETFRNFPLDRIKL 132 Query: 117 KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176 + + +K P +A + ++R +FKWA +++ NP +S+ +P+ + G W Sbjct: 133 SDLEVLRDRKKALPGAATDRVKALRPMFKWATSKKHCVANPAISLTKPRLISNGHHTWLP 192 Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI---- 232 ++++ F+ G++ LA +LY+G R SD+ + G QH Q + K Sbjct: 193 DEIEAFQRRHPLGTKAHLALSIMLYTGARRSDAVQLGRQHEQGDSLRWTAHKNRNRYPTI 252 Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRK 291 I + + + P G + + + F WF + +AG+ SAHG+RK Sbjct: 253 IHIPMLQPLAAAIQAGPTGDMVYLLTEYGKPFTIAGFGNWFHDRCIEAGLPQCSAHGLRK 312 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDS 345 +T +A+AGATAH+LMA +GW+++ +AE YT+ A+R ++ + V + Sbjct: 313 AGSTRAAEAGATAHQLMAMFGWRSLAEAEIYTRAAERKKMAALGMAFLEKGVQA 366 >gi|254503745|ref|ZP_05115896.1| site-specific recombinase, phage integrase family protein [Labrenzia alexandrii DFL-11] gi|222439816|gb|EEE46495.1| site-specific recombinase, phage integrase family protein [Labrenzia alexandrii DFL-11] Length = 347 Score = 320 bits (821), Expect = 2e-85, Method: Composition-based stats. Identities = 119/349 (34%), Positives = 188/349 (53%), Gaps = 14/349 (4%) Query: 3 PSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHE----STFIPAYMSALTGS-TPK 57 P RLP + +E++RHG++ ++FR G G RIRLP ++ S F+ AY +ALTGS PK Sbjct: 2 PKRRLP-HLRREKSRHGRVKWFFRLGDGPRIRLPDDYDLDPASGFMQAYQAALTGSDVPK 60 Query: 58 REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK 117 + P+ TL WL+ +Y +SA + +LA +R S+ I KSG IT + Sbjct: 61 KPRSRYPQ---NTLGWLLDQYEQSAKFAALAKATRQSYGYQIKAIREKSGSVRLIDITER 117 Query: 118 HIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEY----VAINPCLSVERPKRKTEGIRP 173 IR E+R TP++A FL M+V F W + + +P V+R KTEG Sbjct: 118 SIRRAREARAATPNAANAFLKVMKVAFAWGMESGLLDDVIDRDPAKEVKRIDIKTEGHHT 177 Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII 233 WT E+++++++ W G+ RLA + L +GLR D + G QH++ ++ KTG I Sbjct: 178 WTVEEIERYEARWPLGTMERLALDLLACTGLRREDVYQIGRQHIKGGEIHVRASKTGGWI 237 Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQK-MNATQFSIWFKAKATKAGVNKSAHGVRKF 292 + + + + T G+ T +N Q +NA F WF +A V AHG+RK Sbjct: 238 YLPVLPALQESIDATKTGELTLLLNTKGQPHLNAKAFGKWFGKACERAEVPGRAHGMRKA 297 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341 +AT+ A+ GAT H++MA +GW + A YT+ A+R ++ +++ + Sbjct: 298 AATLVAERGATVHQMMAIFGWDSERMAIHYTRKANRKKISLEHGELLDR 346 >gi|218532644|ref|YP_002423460.1| integrase family protein [Methylobacterium chloromethanicum CM4] gi|218524947|gb|ACK85532.1| integrase family protein [Methylobacterium chloromethanicum CM4] Length = 405 Score = 316 bits (811), Expect = 3e-84, Method: Composition-based stats. Identities = 99/348 (28%), Positives = 158/348 (45%), Gaps = 18/348 (5%) Query: 6 RLPPFVTKERTRHGKIIYYFRKGHGRRIRLPY-PHESTFIPAYMSALTGSTPKREYINSP 64 RLP F ++ RHG + Y R+ ++RLP P F+ AY +AL G++ + Sbjct: 4 RLPRFCVEDVDRHGNVRVYLRRKDWPKVRLPGVPWTEPFMEAYRAALNGTSEDKPRDRYA 63 Query: 65 RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK---------SGDFDYRKIT 115 P T KWL +Y SA + +L ++ + + + DF ++T Sbjct: 64 TL-PDTWKWLCQQYVTSARFKTLDPVTQRRRRALLEATYDEPTKPGAKTVFADFPLARLT 122 Query: 116 TKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQE--YVAINPCLSVERPKRKTEGIRP 173 IR + + P A + ++R FKWAV E + NP V +EG Sbjct: 123 PAAIRILRDRKADVPDGANNTVKAIRATFKWAVHPEVALASHNPARDVGYIATASEGFHT 182 Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI- 232 W+ +++++F + GS+ LA LL++G R SD+ G QHLQ K Sbjct: 183 WSVDEVKRFVARHPLGSRAYLALCLLLFAGGRRSDAVLFGRQHLQGAWLRYTQHKGRNAK 242 Query: 233 ---ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG-VNKSAHG 288 + V + + P F + + + F WFK + +AG ++ SAHG Sbjct: 243 PMTLEVPVLPALRAAIEACPSQNLAFLVTERGKPFTSNGFGNWFKDRCREAGLLHCSAHG 302 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336 +RK AT++A+ GAT +LMA +GW+T AE YT+ A++ RL Sbjct: 303 LRKAGATLAAENGATERQLMAMFGWRTSKMAEHYTRKAEQKRLAGGAM 350 >gi|170739145|ref|YP_001767800.1| integrase family protein [Methylobacterium sp. 4-46] gi|168193419|gb|ACA15366.1| integrase family protein [Methylobacterium sp. 4-46] Length = 385 Score = 312 bits (799), Expect = 6e-83, Method: Composition-based stats. Identities = 113/333 (33%), Positives = 173/333 (51%), Gaps = 8/333 (2%) Query: 7 LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHEST-FIPAYMSALTGSTPKREYINSPR 65 PP + +E TRHG +++Y R G G+R R+ + + F Y A+ G + Sbjct: 9 RPPHLVRETTRHGGVVWYVRVGQGKRTRMREAYGTEAFWRDYRLAVEGKPTEAPKA---- 64 Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125 TL WLI +Y +SA W L+ +R + + I +G + + I +G + Sbjct: 65 AATGTLSWLIGKYVESAEWSDLSAATRKQRHAVYRAIEETAGTKPAKLVDKASILAGRDR 124 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE--GIRPWTKEDMQQFK 183 R+ P +A FL +MR LF WAV ++Y+ INP L V+ + G WT+E++ +F+ Sbjct: 125 RRDRPHAANNFLKAMRGLFGWAVDRDYLTINPTLGVKLLTGDNDDAGFHAWTEEELARFE 184 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243 S W G++ RLAF+ LLY+GLR D+ R G QH++ FSI+T+KTG ++T + + Sbjct: 185 SRWPIGTRQRLAFDLLLYTGLRRGDAVRLGRQHVRGQEFSIRTEKTGAVVTRPVLLPLAQ 244 Query: 244 LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGAT 303 + T G F F WFK +AGV S+HG+RK A +A+AGAT Sbjct: 245 SITATKTGGLAFICTERGTPFTKESFGTWFKKVCREAGVPGSSHGLRKAGARRAAEAGAT 304 Query: 304 AHELMATYGWKTV-DQAETYTKGADRIRLGIKN 335 +L A +GW ++ TYT+ AD RL + Sbjct: 305 EAQLNALFGWAPGSRESATYTRTADNARLAREA 337 >gi|329888236|ref|ZP_08266834.1| phage integrase family protein [Brevundimonas diminuta ATCC 11568] gi|328846792|gb|EGF96354.1| phage integrase family protein [Brevundimonas diminuta ATCC 11568] Length = 343 Score = 311 bits (798), Expect = 7e-83, Method: Composition-based stats. Identities = 87/341 (25%), Positives = 160/341 (46%), Gaps = 10/341 (2%) Query: 8 PPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKK 67 P FV+ R RHG + + FR+ + + + A+ + + + PK I R K Sbjct: 5 PKFVSAYRDRHGVLRWRFRRTGSPQSQTRAIFGTEDWWAWYAESSEARPKA--IGQDRTK 62 Query: 68 PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK 127 P ++ L Y SA + L N++ +++ D+ G + ++ +HIR ++ Sbjct: 63 PGSIHALAVAYYSSARFLQLKPNTKHTYKGVLDRYRDVHGAKPFSRLEPRHIRQQMDDMA 122 Query: 128 H-------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 T + A L +R + ++A+ + ++++P + V K +T G WT++++ Sbjct: 123 REMIEQGNTVTPANTMLKVLRSVMRFAMERGLISVDPTMGVRMLKHQTSGFHTWTEDEIA 182 Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240 F++ W GS+ RL F+ LLY+ R D + V + + +++ KTG +I + Sbjct: 183 MFEAHWPLGSKQRLGFDLLLYTAQRSDDVRQMTVHQIARDRVTVRQGKTGQLIDIPQHPR 242 Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISAD 299 LA + IG + F W K A KAG+ + SAHG+RK + A+ Sbjct: 243 LQASLAASAIGHLVVLTTQHGKMYTPNGFGNWIKDAAVKAGLPHCSAHGLRKAQSRRLAE 302 Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340 AG + HE+ A G +++ + E YT+ A+R L +R+ Sbjct: 303 AGCSTHEIAAITGHQSLKEIERYTREANRRGLADGAMKRVG 343 >gi|260431275|ref|ZP_05785246.1| phage integrase [Silicibacter lacuscaerulensis ITI-1157] gi|260415103|gb|EEX08362.1| phage integrase [Silicibacter lacuscaerulensis ITI-1157] Length = 373 Score = 307 bits (786), Expect = 2e-81, Method: Composition-based stats. Identities = 85/347 (24%), Positives = 158/347 (45%), Gaps = 10/347 (2%) Query: 9 PFVTKERTRHGKIIYYFRKGHGRRIRLPYP-HESTFIPAYMSALTGSTPKREYINSPRKK 67 +V ++ RHG + Y+R+ +GR++RL P F+ Y +A G + + + R Sbjct: 11 KYVVEDVDRHGNVRLYYRR-NGRKVRLRGPAGSPEFLADYRTAAAG-PKEAKTDKAGRVV 68 Query: 68 PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK--SGDFDYRKITTKHIRSGVES 125 P + +WL +Y KSA + L ++ S ++ GD + ++ +HIR + Sbjct: 69 PKSFRWLCVQYFKSAMFQELDPRTQKVRRSILERFCEHKGDGDKPFAQLLPRHIRVRRDE 128 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 P +A + ++R L+++A+R ++ NP VE K +G WT ++++++ Sbjct: 129 MADRPEAANGMVKAVRQLYRYALRYDHHDDNPAEKVEYLKGNPDGFHSWTLAEIEKYEEA 188 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK----TGTIITVELPDGF 241 G+ RLA LY+G R +D G QH+++ K + + + Sbjct: 189 HPIGTPARLALALALYTGQRRADLVVLGKQHVRDGWLIFTQHKGRNRKPVRMEIPVIPEL 248 Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADA 300 +++ TP G TF + + + F F+ AG+ S HG+RK +A A+ Sbjct: 249 QQIIDATPTGDLTFLVTAFNRPFTSNGFGNRFRKWCDDAGLPQCSVHGLRKAAAARLAEL 308 Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347 G T E+M+ G +T + YT+ A + RR+S ++ Sbjct: 309 GCTEQEIMSITGHRTSKEVTRYTRAASQKTRAESALRRLSREQTPNE 355 >gi|75674473|ref|YP_316894.1| phage integrase [Nitrobacter winogradskyi Nb-255] gi|74419343|gb|ABA03542.1| phage integrase [Nitrobacter winogradskyi Nb-255] Length = 359 Score = 306 bits (785), Expect = 2e-81, Method: Composition-based stats. Identities = 95/343 (27%), Positives = 159/343 (46%), Gaps = 8/343 (2%) Query: 10 FVTKERTRHGKIIYYFRKGHGRRIRLPY-PHESTFIPAYMSALTG--STPKREYINSPRK 66 + ++ RHG + Y R+ +++RL P F+ Y AL G P + Sbjct: 17 YTYEDTDRHGNVRIYVRRPGMKKVRLRKTPGTPEFLEEYRDALAGRLELPSDKRPVRVPA 76 Query: 67 KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126 TL+WL +Y +SA + L ++ D I ++ GD Y + +H+R + + Sbjct: 77 GKGTLRWLCEQYYRSAEYKRLEPRTQHVRRLILDSICKRDGDKPYALMEPRHLRRRRDEK 136 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 TP +A + ++R +F +A+ + NP V K +EG W E+++QF+ Sbjct: 137 SDTPEAANGIVKALRQVFTFALENDLAQRNPAKDVPYLKSGSEGFHSWNIEEVRQFEERH 196 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI----ITVELPDGFM 242 S GS+ RLA LLY+G R SD G QH+++ F+ K +++ + Sbjct: 197 SVGSKARLALALLLYTGQRRSDVVALGRQHIRDGWFTFTQVKNRNRKPVTLSIPVRPELK 256 Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAG 301 ++ TP G T+ + + A F WF+ + +AG+ + SAHG+RK +A A+ G Sbjct: 257 AIIDATPSGNLTYLVTAFGKPFTANGFGNWFRERCDEAGLPHCSAHGLRKAAAARLAELG 316 Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344 A+ E+MA G T + YT+GA + L R D Sbjct: 317 ASESEIMAVTGHTTSKEIVRYTRGARQKVLAANAMARFGENKD 359 >gi|315121974|ref|YP_004062463.1| integrase family protein [Candidatus Liberibacter solanacearum CLso-ZC1] gi|315122942|ref|YP_004063431.1| integrase family protein [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495376|gb|ADR51975.1| integrase family protein [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313496344|gb|ADR52943.1| integrase family protein [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 299 Score = 306 bits (784), Expect = 3e-81, Method: Composition-based stats. Identities = 109/303 (35%), Positives = 169/303 (55%), Gaps = 7/303 (2%) Query: 44 IPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII 103 + Y AL G ++ S T KWLI +YR S H+ SL +R ++ F QII Sbjct: 1 METYADALAGRLRQKGDHGS----KGTFKWLIDQYRLSGHFQSLNPTTRRVRDNLFYQII 56 Query: 104 RKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER 163 + SGD + KIT +H+++ V+ R PS AI FL ++ +FKWA E + NP + V R Sbjct: 57 KDSGDIPFAKITRRHLQNAVDRRSSKPSVAISFLKAISPVFKWAETCELITKNPVIGVCR 116 Query: 164 PKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS 223 P +T G+ WT E ++ ++ + RLA E +L+ GLR SD R G QH+++++ S Sbjct: 117 PPIRTIGMHTWTMEQVEVYRKHHPINTMARLALELMLFLGLRRSDVIRIGKQHVKDSVLS 176 Query: 224 IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ-FSIWFKAKATKAGV 282 I T+KTG + V + + K L + + TF I + +++ F WF+ + +AG+ Sbjct: 177 IHTKKTGKQVHVPIFEDLQKCLDAVGVDRGTFLITAIGKPFSSSGSFGNWFRDRCKEAGL 236 Query: 283 --NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340 AHG+RK ATI+A+AGA+ HELMA +GW D A+ YT+ + +L K ++ I+ Sbjct: 237 PDKCRAHGLRKAGATIAANAGASPHELMAMFGWSKTDMADLYTREVNSKKLAYKAAKMIA 296 Query: 341 SVV 343 V Sbjct: 297 DCV 299 >gi|300023048|ref|YP_003755659.1| integrase family protein [Hyphomicrobium denitrificans ATCC 51888] gi|299524869|gb|ADJ23338.1| integrase family protein [Hyphomicrobium denitrificans ATCC 51888] Length = 411 Score = 305 bits (782), Expect = 5e-81, Method: Composition-based stats. Identities = 89/354 (25%), Positives = 163/354 (46%), Gaps = 18/354 (5%) Query: 10 FVTKERTRHGKIIYYFRKGHGRRIRLPY-PHESTFIPAYMSAL---TGSTPKREYINSPR 65 ++ ++ RHG + YFR R+IRL P F Y S + K S Sbjct: 13 YLVEDTDRHGNVRIYFRYPGYRKIRLRERPTSPEFAERYSSLIEQFATGCYKEAEKTSVS 72 Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII---------RKSGDFDYRKITT 116 P TL WL++ +R S + +L +++ + + ++ +F +I Sbjct: 73 AVPGTLGWLVTAFRASKDFSNLDPSTQRTRARVLESMLNEPIFQEAAETFRNFPLDRIKL 132 Query: 117 KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176 + + +K P +A + ++R +FKWA +++ NP +S+ +P+ + G W Sbjct: 133 SDLEVLRDRKKALPGAATDRVKALRPMFKWATSKKHCVANPAISLTKPRLISNGHHTWLP 192 Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI---- 232 ++++ F+ G++ LA +LY+G R SD+ + G QH Q + K Sbjct: 193 DEIEAFQRRHPLGTKAHLALSIMLYTGARRSDAVQLGRQHEQGDSLRWTAHKNRNRYPTI 252 Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRK 291 I + + + P G + + + F WF + +AG+ SAHG+RK Sbjct: 253 IHIPMLQPLAAAIQAGPTGDMVYLLTEYGKPFTIAGFGNWFHDRCIEAGLPQCSAHGLRK 312 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDS 345 +T +A+AGATAH+LMA +GW+++ +AE YT+ A+R ++ + V + Sbjct: 313 AGSTRAAEAGATAHQLMAMFGWRSLAEAEIYTRAAERKKMAALGMAFLEKGVQA 366 >gi|312115482|ref|YP_004013078.1| integrase family protein [Rhodomicrobium vannielii ATCC 17100] gi|311220611|gb|ADP71979.1| integrase family protein [Rhodomicrobium vannielii ATCC 17100] Length = 352 Score = 305 bits (781), Expect = 6e-81, Method: Composition-based stats. Identities = 87/349 (24%), Positives = 155/349 (44%), Gaps = 8/349 (2%) Query: 4 SLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPY-PHESTFIPAYMSALTGSTPKREYIN 62 + PP+ + +YF + R+R+P P F+ Y A + K I Sbjct: 6 KSKAPPYCHWKTNGRNFGCWYFERPGYPRVRVPGLPWTPEFMAVYEKA---TKAKPAEIG 62 Query: 63 SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG 122 + R P +L +I Y SA W LA +++ ++ + + G + +HI+ Sbjct: 63 ASRTVPRSLGAVIVAYYSSAAWRGLASSTKRTYGGVIEALREAHGGMPIAGLKREHIKKL 122 Query: 123 VESRK--HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 +E + +A + L+ + +L A+ + NP +V++ K + G WT++++ Sbjct: 123 IEKKALEGGACAANRLLSVLGILLDVALDAGLIETNPARTVKKLKHRAIGFHTWTEDEVA 182 Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240 F++ W+ ++ RLAFE LL + R SD + + ++ QKT + + L Sbjct: 183 AFRAHWAIETRQRLAFELLLCTAQRSSDVRQMRTAQIAGGCVALSQQKTHAPLRIPLLPE 242 Query: 241 FMKLLAMTPI-GKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISA 298 LA P+ G ET + + F ++ K AG+ + SAHG+RK +A A Sbjct: 243 LQAALAAAPVIGAETALVTQYGRAFTEKGFGLFIKKACVAAGLTHCSAHGLRKAAARRLA 302 Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347 +AG T H++ A G T+ + E YTK A ++RL + D Sbjct: 303 EAGCTVHQIAAITGHATLREIERYTKEASQLRLAEAAFATLRGTSDERK 351 >gi|86358521|ref|YP_470413.1| integrase/recombinase protein [Rhizobium etli CFN 42] gi|86282623|gb|ABC91686.1| probable integrase/recombinase protein [Rhizobium etli CFN 42] Length = 404 Score = 305 bits (781), Expect = 7e-81, Method: Composition-based stats. Identities = 83/353 (23%), Positives = 152/353 (43%), Gaps = 17/353 (4%) Query: 10 FVTKERTRHGKIIYYFRKGHGRRIRL-------PYPHESTFIPAYMSALTGSTPKREYIN 62 + + G YY RK +++R+ F+ AY +AL Sbjct: 8 YCVYDPDPRGNPRYYVRKNGYKKVRIFEKFDDGRGNITEAFMKAYWAALAAMDGGAAPSK 67 Query: 63 SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG 122 + T WL+ +Y +S + L V ++ S + +G Y+K + + + Sbjct: 68 KEVPREDTFDWLVDQYYRSNAFKRLEVTTQSDKRSVLARFCMTAGPLPYKKFRQQDVANS 127 Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQE--YVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 RK TP +A + + +R LF WA++Q+ ++ NP +++ +EG WT +++ Sbjct: 128 QLKRKETPGAADKLVKVLRALFNWAMKQDPPLISANPATGIKKLNAASEGFHTWTPDEID 187 Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI----ITVE 236 ++++ G+ RLA E ++ G R SD+ G QH +K I V Sbjct: 188 TYRAYHPIGTTARLALEIMINVGARISDAAYIGRQHESGGELRFTARKNRNRKPTVIEVP 247 Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSAT 295 + + L T G + + + + AG+ SAHG+RK +A Sbjct: 248 MMPDLVDALRHTKTGDFNYLVTEHGRPFTVNGLGNRMREWCDAAGLPQCSAHGLRKAAAV 307 Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348 I A++GA+A E+ A +GW ++ AETY + A + ++ R++ D +P Sbjct: 308 IFAESGASAPEMCAVFGWSKLETAETYIRNAQKRKMASNAFARLA---DYRNP 357 >gi|220922490|ref|YP_002497792.1| integrase family protein [Methylobacterium nodulans ORS 2060] gi|219947097|gb|ACL57489.1| integrase family protein [Methylobacterium nodulans ORS 2060] Length = 346 Score = 304 bits (778), Expect = 2e-80, Method: Composition-based stats. Identities = 121/346 (34%), Positives = 183/346 (52%), Gaps = 9/346 (2%) Query: 7 LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPH-ESTFIPAYMSAL-TGSTPKREYINSP 64 PP + +E TRHGK ++Y R G G+RIR+ + F Y A+ +G P ++ Sbjct: 5 RPPHLVREITRHGKPVWYVRVGQGKRIRMRETYGSPEFWRDYRLAVESGQLPAKQAGP-- 62 Query: 65 RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124 P TL WLI+ Y S W L+ +R + + + +G+ R I K I +G + Sbjct: 63 --NPGTLSWLIARYVASPEWADLSRRTRTGRHAILRAVEKTAGNELLRHIDRKAIVTGRD 120 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE--GIRPWTKEDMQQF 182 R+ TPS+A FL +MR LF WAV E++ NP + V+ RK G WT+E+++QF Sbjct: 121 RRRDTPSAANNFLYAMRALFAWAVEHEHIDQNPAVGVKPLARKNADVGFHTWTEEEVRQF 180 Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242 ++ W G+Q RLA + LLY+GLR SD G QH++ + F+I+T+KTG ++ + Sbjct: 181 EARWPVGTQERLALDLLLYTGLRRSDVVVLGRQHVKGDTFTIRTKKTGAVVVRPILPPLA 240 Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGA 302 +A P G F + + F+ WF+ KAGV +HG+RK +A +A+AGA Sbjct: 241 ASIAAAPTGDLAFLVTSRGTPWVDDSFAKWFRRACEKAGVPGRSHGLRKAAARRAAEAGA 300 Query: 303 TAHELMATYGWKTV-DQAETYTKGADRIRLGIKNSRRISSVVDSDD 347 + EL A +GW+ ++ TYT+ AD RL R DD Sbjct: 301 SEMELNALFGWRPGSRESATYTRAADVERLARGALMRNPRAWKGDD 346 >gi|89070660|ref|ZP_01157933.1| phage integrase [Oceanicola granulosus HTCC2516] gi|89043740|gb|EAR49943.1| phage integrase [Oceanicola granulosus HTCC2516] Length = 375 Score = 303 bits (777), Expect = 2e-80, Method: Composition-based stats. Identities = 91/348 (26%), Positives = 153/348 (43%), Gaps = 10/348 (2%) Query: 9 PFVTKERTRHGKIIYYFRKGHGRRIRLPYP-HESTFIPAYMSALTGSTPKR-EYINSPRK 66 +V ++ RHG + Y+R+ +G + RL P F+ Y A G R R Sbjct: 11 KYVVEDVDRHGNVRLYYRR-NGTKTRLRGPVGSPEFLIDYRRAAAGPKEVRGHKARVGRV 69 Query: 67 KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK--SGDFDYRKITTKHIRSGVE 124 P +LKWL +Y KSA + L ++ S ++ GD + + +HIR + Sbjct: 70 VPRSLKWLCVQYYKSAMFTELDPRTQKVRRSILERFCEHKNDGDKPFALLLPRHIRVRRD 129 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 P +A + ++R L+++A+R ++ NP VE K + +G WT ++++F+ Sbjct: 130 EMADRPEAANGMVKALRQLYRYALRYDHHDDNPADKVEYLKGEPDGFHSWTLAEIKKFED 189 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK----TGTIITVELPDG 240 GS RLA LY+G R +D G QH+++ K + + + Sbjct: 190 AHPVGSPARLALALALYTGQRRADLVTLGKQHVRDGWLIFTQHKGRNRKPVRLEIPVIPE 249 Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISAD 299 +++ TP G F + + + F F+ AG+ N S HG+RK +A A+ Sbjct: 250 LQRIIDATPTGDLNFLVTAFNRPFTSNGFGNRFRKWCDDAGLPNCSVHGLRKAAAARLAE 309 Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347 G T E+MA G T + YT+ A + RR + +SD Sbjct: 310 LGCTEQEIMAITGHATSKEVTRYTRAASQKTRAESALRRFTEEQNSDK 357 >gi|146340241|ref|YP_001205289.1| putative phage integrase/recombinase [Bradyrhizobium sp. ORS278] gi|146193047|emb|CAL77058.1| Putative Phage Integrase/recombinase [Bradyrhizobium sp. ORS278] Length = 345 Score = 301 bits (770), Expect = 1e-79, Method: Composition-based stats. Identities = 109/340 (32%), Positives = 175/340 (51%), Gaps = 7/340 (2%) Query: 7 LPPFVTKERTRHGKIIYYFR-KGHGRRIRLPYPHES-TFIPAYMSALTGSTPKREYINSP 64 PP + + +RHGK+ ++ + + + R+ + S F+ AY +A+TG K Sbjct: 8 RPPHLQRGVSRHGKVYWFDQMRRGAPKTRIRGEYGSAEFMAAYDAAVTGGAAKP--TPEI 65 Query: 65 RKKPTTLKWLISEYRKSAHWGS-LAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123 + TL+W YR+S W S L+ +R E+ +++ + I I G+ Sbjct: 66 KAPKGTLEWAWMLYRQSGAWQSGLSQATRRQRENIMKHVLKTAASTPLSDIDAAAIADGI 125 Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR-KTEGIRPWTKEDMQQF 182 + R TPS A FL +M F W R + V+ NPC E PKR KT G + W+ +D++ + Sbjct: 126 DRRAKTPSQAKNFLQTMNQFFAWLKRAKIVSENPCDGAELPKRPKTGGFKKWSLDDVELY 185 Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242 + W G++ R+ + +Y+GLR D+ G QH++N + S++T+K G + + L D Sbjct: 186 EKRWPIGTRERVMLDDYMYTGLRRGDAAVVGKQHVRNGVISLQTEKAGQWVHIPLLDVLK 245 Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAG 301 + L P+G + + FK AGV +KSAHG+RK +AT +AD G Sbjct: 246 RTLEAGPVGDLAWNATKSGRPFAKESLGNAFKDACVAAGVRDKSAHGLRKAAATRAADNG 305 Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341 ATAHELMA + W + +AE YT+ ADR RL + ++ Sbjct: 306 ATAHELMAIFRWVDIKEAELYTRAADRKRLAAQAMGKLEK 345 >gi|148257958|ref|YP_001242543.1| putative phage integrase [Bradyrhizobium sp. BTAi1] gi|146410131|gb|ABQ38637.1| putative phage integrase [Bradyrhizobium sp. BTAi1] Length = 382 Score = 300 bits (768), Expect = 2e-79, Method: Composition-based stats. Identities = 103/350 (29%), Positives = 170/350 (48%), Gaps = 11/350 (3%) Query: 5 LRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPY-PHESTFIPAYMSALTGS-TPKREYIN 62 RLPP+V + G FR+G G RIRLP P S F+ AY SAL G T R + Sbjct: 3 RRLPPYVERNHV-KGHTYLSFRRGKGARIRLPDDPTSSEFMSAYQSALLGQATSSRPELR 61 Query: 63 SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG 122 SP T+ LI+ Y +S+ + L S+ + + + + G ++ + I +G Sbjct: 62 SPVH--GTISALIASYMRSSDYIGLRKTSKEGYGRRLEALRIEHGHRTVAGLSRERIITG 119 Query: 123 V-ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 + + P +A+ L +R+L + A+ ++ +P + ++RPK + IR WT+++++ Sbjct: 120 ILQPFADRPGAALDTLKKLRILIRHAINIGWIKHDPSVGIKRPKLQR--IRSWTEDEIEL 177 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDG 240 F+ W ++ RLAFE L +G R SD R H+ N ++ Q+TG + + L Sbjct: 178 FRKKWPLETKQRLAFELFLNTGQRRSDVVRMAWSHITPENRIAVAQQETGRRLLIPLHRD 237 Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISA 298 + LA+ + Q + FS W + T AG+ HG+RK + A Sbjct: 238 LLSALAVAKRDHMSIITTAYGQSFSVDGFSQWMRDAITDAGLPLGCQPHGLRKATGRRLA 297 Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348 +AGATA +M+ G T+ +AE YT+ AD+ L + R+ +D P Sbjct: 298 EAGATAKMIMSVLGHTTLAEAERYTEEADQASLAVDAVARLEGHKANDFP 347 >gi|254559696|ref|YP_003066791.1| phage integrase [Methylobacterium extorquens DM4] gi|254266974|emb|CAX22774.1| phage integrase [Methylobacterium extorquens DM4] Length = 426 Score = 297 bits (761), Expect = 1e-78, Method: Composition-based stats. Identities = 89/345 (25%), Positives = 155/345 (44%), Gaps = 9/345 (2%) Query: 9 PFVTKERTRHGKIIYYFRKGHGRRIRLPY-PHESTFIPAYMSALTGSTPKREYINSPRKK 67 FV + RHG + YYFR+ + RL P F+ Y L G P R Sbjct: 7 KFVVSDVDRHGNVRYYFRRRPDPKTRLRGKPGSKIFMETYDRCLAGDAPAATACAEVR-- 64 Query: 68 PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK 127 P + + + Y S+ +G+L +++ + G R++ +H+R +SR+ Sbjct: 65 PGSFRSVCERYLGSSAFGALDPSTQAWRRRGLEAACEAHGGKLIRRLLARHVRQMRDSRR 124 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 TP++A L ++R LF WAV + +P V+R + ++G W+ +++ +++ Sbjct: 125 GTPAAANTLLKALRALFSWAVEHDLAPGDPTREVKRVRYASKGHHSWSLTEVEAYEAVHP 184 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI----ITVELPDGFMK 243 G++ RLA LLY+ R D R G +H+ K + + + + Sbjct: 185 LGTKARLALALLLYTAGRREDVVRLGPRHVSAGRMRYVQAKNEHRAPVAMDIPIHPDLAE 244 Query: 244 LLA-MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAG 301 +A + P +F + + + F FK +A + + SAHG RK +A A+ G Sbjct: 245 AIASVPPSSCPSFLETDYGRSFSPNGFGNRFKEWCIQAALPHCSAHGCRKATAARLAERG 304 Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSD 346 AT H++MA G +T+++ E YT+ A R RL + SD Sbjct: 305 ATPHQIMAITGHRTLEEVERYTREAQRARLADDAMALLPRRSGSD 349 >gi|326385719|ref|ZP_08207348.1| integrase family protein [Novosphingobium nitrogenifigens DSM 19370] gi|326209698|gb|EGD60486.1| integrase family protein [Novosphingobium nitrogenifigens DSM 19370] Length = 359 Score = 296 bits (758), Expect = 3e-78, Method: Composition-based stats. Identities = 78/335 (23%), Positives = 145/335 (43%), Gaps = 2/335 (0%) Query: 7 LPPFVTKERTRHGKIIYYFRK-GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65 LP +V+ R RHGK Y FR+ G + + P F Y + LT S + + + Sbjct: 6 LPKWVSGFRDRHGKARYRFRRKGQAQYLFKHAPGTEEFRQEYQACLTASEAPKIQPGADK 65 Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125 KP T LI Y +S + + +++ + ++ K G + T+H+ + + Sbjct: 66 IKPGTFDDLIVRYYRSPDFLDPSPRTQVVYRGVIERWRAKYGSGRVADLETRHVAAMMAE 125 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 +SA + L +A RQ + NP L+ + + G WT+ ++ +++ Sbjct: 126 MLPHRTSANMLRKRLSALMAFANRQGEIDKNPVLATKPYRIDGGGFHTWTEPEIALYEAH 185 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245 G+ RL F+ LL++G R D G +Q+ I +KT +++ + + + Sbjct: 186 HPTGTMARLMFDLLLWTGQRGGDVRLLGPNAIQDKRLVITQEKTKVTVSLPILPALAQSI 245 Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATA 304 T G++TF + + F F+ AG+ + SAHG+RK +A A+A + Sbjct: 246 LATQTGEDTFLVTTHGKTFTRKGFGNKFRDWCDAAGLPHCSAHGLRKAAARRFAEARCSN 305 Query: 305 HELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339 ++ A G T + YT D+ + + + Sbjct: 306 QQIKAWTGHTTDSEIARYTAAVDQQLMSDAAAEML 340 >gi|218528998|ref|YP_002419814.1| integrase family protein [Methylobacterium chloromethanicum CM4] gi|218521301|gb|ACK81886.1| integrase family protein [Methylobacterium chloromethanicum CM4] Length = 426 Score = 295 bits (756), Expect = 6e-78, Method: Composition-based stats. Identities = 89/345 (25%), Positives = 155/345 (44%), Gaps = 9/345 (2%) Query: 9 PFVTKERTRHGKIIYYFRKGHGRRIRLPY-PHESTFIPAYMSALTGSTPKREYINSPRKK 67 FV + RHG + YYFR+ + RL P F+ Y L G P R Sbjct: 7 KFVVSDVDRHGNVRYYFRRRPDPKTRLRGKPGSKIFMETYDRCLAGDAPAATACAEVR-- 64 Query: 68 PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK 127 P + + + Y S+ +G+L +++ + G R++ +H+R +SR+ Sbjct: 65 PGSFRSVCERYLGSSAFGALDPSTQAWRRRGLEAACEAHGGKLIRRLLARHVRQMRDSRR 124 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 TP++A L ++R LF WAV + +P V+R + ++G W+ +++ +++ Sbjct: 125 GTPAAANTLLKALRALFSWAVEHDLAPGDPTREVKRVRYASKGHHSWSLTEVKAYEAVHP 184 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI----ITVELPDGFMK 243 G++ RLA LLY+ R D R G +H+ K + + + + Sbjct: 185 LGTKARLALALLLYTAGRREDVVRLGPRHVSAGRMRYVQAKNEHRAPVAMDIPIHPDLAE 244 Query: 244 LLA-MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAG 301 +A + P +F + + + F FK +A + + SAHG RK +A A+ G Sbjct: 245 AIASVPPSSGPSFLETDYGRSFSPNGFGNRFKEWCIQAALPHCSAHGCRKATAARLAERG 304 Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSD 346 AT H++MA G +T+++ E YT+ A R RL + SD Sbjct: 305 ATPHQIMAITGHRTLEEVERYTREAQRARLADDAMALLPRRSGSD 349 >gi|58040908|ref|YP_192872.1| Phage related integrase [Gluconobacter oxydans 621H] gi|58003322|gb|AAW62216.1| Phage related integrase [Gluconobacter oxydans 621H] Length = 332 Score = 294 bits (753), Expect = 1e-77, Method: Composition-based stats. Identities = 93/329 (28%), Positives = 155/329 (47%), Gaps = 6/329 (1%) Query: 22 IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKS 81 YFR R LP + F PAY +A+ P + T L ++ KS Sbjct: 2 RVYFRHPRLPRQVLPPVDDPAFWPAYHAAIAQIPKDEP---RPIRGTGTFARLCEDWLKS 58 Query: 82 AHWGSLAVNSRISFESY-FDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSM 140 + SL ++++ + + F KHIR+ + P+S ++L Sbjct: 59 NSFLSLKPSTQVGHRNIVLRMMREDFATFHVSDFEPKHIRAIINRFSDRPASGNRWLRIF 118 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL 200 +LF+ A+ Q+ + ++P V R K + EG RPWT+ ++ QF++ W GS+ R AF LL Sbjct: 119 GILFRLAIEQDLIQVDPARDVRRLKERAEGARPWTEVEVAQFQAHWPLGSRARTAFALLL 178 Query: 201 YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINND 260 Y+G R SD + G +++ + ++ QKTGT + V + LA T K + Sbjct: 179 YTGQRRSDVVKIGPACIKDGMIAVTQQKTGTSLMVPILKDLALALAATLGVKAYYLEVVP 238 Query: 261 KQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318 +K ++ K AG+ + SAHG+RK +A A+AG T H++ A G KT+ + Sbjct: 239 GRKPSSDSLGNLMKDWTLAAGLPSDLSAHGLRKTAARRLAEAGCTTHQIAAITGHKTLAE 298 Query: 319 AETYTKGADRIRLGIKNSRRISSVVDSDD 347 E YT+ D+ RL + + +V + + Sbjct: 299 VERYTRSVDQKRLAKQAVALLEAVKPNSE 327 >gi|220927097|ref|YP_002502399.1| integrase family protein [Methylobacterium nodulans ORS 2060] gi|219951704|gb|ACL62096.1| integrase family protein [Methylobacterium nodulans ORS 2060] Length = 344 Score = 294 bits (752), Expect = 1e-77, Method: Composition-based stats. Identities = 111/335 (33%), Positives = 175/335 (52%), Gaps = 14/335 (4%) Query: 5 LRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPH-ESTFIPAYMSALTGSTPKREYINS 63 PP + +E TRHG+ ++Y R G G+RIR+ P+ F Y A+ G+ P + Sbjct: 3 RSRPPHLVREVTRHGRPVWYVRVGQGKRIRMREPYGSPEFWRDYRLAVEGTPPPAGKGPA 62 Query: 64 PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123 P TL WL+++Y +SA W + +R + + I + +G + I + I +G Sbjct: 63 PG----TLSWLLAKYVESAEWSDFSAATRKQRHAIYRAIEKTAGHEPIKLIDRRAILNGR 118 Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE--GIRPWTKEDMQQ 181 + R+ P +A F+ +MR LF WAV + YVA +P V+ + + G WT+E++ + Sbjct: 119 DRRRDRPHAANVFIKAMRALFSWAVDRGYVATDPTAGVKMLAGENDDVGFHTWTEEELAR 178 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241 F++ W G++ RLAF+ LLY+GLR D+ R G QH++ + FSI+T +T + Sbjct: 179 FEARWPLGTRERLAFDILLYTGLRRGDAVRLGRQHVKGDAFSIRT------VTRPILPQL 232 Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAG 301 +A T G F + D F WF+ A V SAHG+RK A +A+AG Sbjct: 233 AASIAATKTGDLAFIVRMDGHPFVKEGFGNWFREACRAAKVPGSAHGLRKAGARRAAEAG 292 Query: 302 ATAHELMATYGWKTV-DQAETYTKGADRIRLGIKN 335 AT +L A +GW+ ++ TYT+ AD RL + Sbjct: 293 ATEMQLNALFGWRPGSRESATYTRTADNARLAREA 327 >gi|85716138|ref|ZP_01047113.1| Integrase /recombinase [Nitrobacter sp. Nb-311A] gi|85696971|gb|EAQ34854.1| Integrase /recombinase [Nitrobacter sp. Nb-311A] Length = 316 Score = 293 bits (750), Expect = 3e-77, Method: Composition-based stats. Identities = 98/299 (32%), Positives = 159/299 (53%), Gaps = 5/299 (1%) Query: 44 IPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII 103 + AY +AL G P+ + TL+WL + YR+S+ W L+ +R E+ ++ Sbjct: 1 MEAYHAALAGERPQPK----SEAARGTLEWLWTLYRQSSAWADLSAATRKQRENIMKHVL 56 Query: 104 RKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER 163 + +G IT I +G + R TPS A F++++R LF WA+ V +P V+R Sbjct: 57 KSAGHQPLSHITRASIVAGRDRRAKTPSQAKNFISTVRGLFGWALDANLVNSDPTAGVKR 116 Query: 164 PKRK-TEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222 PKRK +EG + WT++D+++F+ W+ G++ R+ F+ L++GLR D+ + G QH+++ Sbjct: 117 PKRKRSEGFQVWTEDDIEKFQKRWNRGTRERVMFDLFLFTGLRRGDAAQVGKQHVKDGSI 176 Query: 223 SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282 SI T+KTG +T+ + L P+G F M F+ AG+ Sbjct: 177 SINTEKTGIRVTIPIQPELQATLDAGPVGDLAFIATAAGVPMTKESLGNAFRDACRSAGI 236 Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341 KSAHG+RK +AT +A+ GAT EL A +GW A YT+ +R L + ++S Sbjct: 237 TKSAHGLRKAAATNAANRGATERELEALFGWVGGQMASLYTRSVNREALSKGAAAKMSR 295 >gi|146343024|ref|YP_001208072.1| putative phage integrase/recombinase [Bradyrhizobium sp. ORS278] gi|146195830|emb|CAL79857.1| Putative phage integrase/recombinase [Bradyrhizobium sp. ORS278] Length = 429 Score = 287 bits (734), Expect = 2e-75, Method: Composition-based stats. Identities = 106/371 (28%), Positives = 173/371 (46%), Gaps = 30/371 (8%) Query: 7 LPPFVTKERTRHGKIIYYFRKG--HGRRIRLPYPHES-TFIPAYMSALTGSTPKREYINS 63 P++ KE RHG+ ++Y R G+R R+ + S F Y AL G + Sbjct: 9 RKPYLHKEINRHGRTVWYVRNKDVGGKRTRIRGEYGSTEFNRNYDIALAGMFNRPRLAID 68 Query: 64 PRKK-----PTTLKWLISEYR-KSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK 117 P + +LKWL EY+ K+ W + ++ S ++ +G+ I + Sbjct: 69 PSEARAKVFDGSLKWLWEEYKAKAPDWREMKASTHKQRNSLMIHVLEANGNKRAAAIQKQ 128 Query: 118 HIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK-RKTEGIRPWTK 176 HI G+ R PS+A FLT+MR +F WAV Q+ +A++P ++ PK KTEG W+ Sbjct: 129 HILDGLGRRAQNPSAARHFLTTMRRMFIWAVAQKILAVDPTEGIKTPKPAKTEGFVTWSD 188 Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN---------------- 220 D++++ W G++ R+ + L++G R D+ G + Sbjct: 189 ADVRRYYKRWPLGTRERVMIDVYLFTGFRRGDAASFGPADVTEQVQERIGPDGKLEQISV 248 Query: 221 -IFSIKTQKTGTIITV--ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKA 277 I + + +K I V + D + L P+G ET+ + M FK K Sbjct: 249 PIITKRLEKGSETIEVTFPMLDVLRRTLEAGPVGTETYIATRQGKPMTKESLGNVFKEKC 308 Query: 278 TKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336 AG+ N+SAHG+RK +AT++A+ GAT EL A +GW A YT+ A+R +L Sbjct: 309 VAAGLANRSAHGLRKAAATVAAENGATEAELDAIFGWTDRRMASHYTRNANRKKLAYGGV 368 Query: 337 RRISSVVDSDD 347 ++ + S+D Sbjct: 369 AKLERKIGSED 379 >gi|299134375|ref|ZP_07027568.1| integrase family protein [Afipia sp. 1NLS2] gi|298591122|gb|EFI51324.1| integrase family protein [Afipia sp. 1NLS2] Length = 383 Score = 285 bits (728), Expect = 9e-75, Method: Composition-based stats. Identities = 88/348 (25%), Positives = 148/348 (42%), Gaps = 18/348 (5%) Query: 10 FVTKERTRHGKIIYYFR--KGHGRRIRLP-------YPHESTFIPAYMSALTGSTPKREY 60 + + G YY R + ++IR+ F+ AY+ AL S K Sbjct: 8 YCVYDPDTAGNPRYYVRNLRKSSKKIRIRESFEAPDGTITPEFMKAYLDALA-SLDKETS 66 Query: 61 INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK-SGDFDYRKITTKHI 119 + T WL +Y +SA + ++ ++ +GD Y + Sbjct: 67 SAPKASREKTFSWLCDQYYRSAEFQRFDRLTQADKRGVLNRFCAAGAGDLPYAAFRQADV 126 Query: 120 RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179 + R TP +A + + +R LFKWA+++ ++NP + VE+ + EG WT +++ Sbjct: 127 ERSRDKRAGTPGAADKLVKYLRALFKWAIKKRLASVNPAIGVEKI-NEGEGWHAWTPDEV 185 Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-----KTQKTGTIIT 234 ++ S G++ RLA E +L G R SD+CR G QH N + +K+ I Sbjct: 186 ATYRKHHSIGTKARLALELMLNVGARISDACRIGRQHESNGWLKFVAWKNRNKKSRKTIE 245 Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFS 293 + + T G T+ IN+ + + A + S+HG+RK + Sbjct: 246 CPITLELRAAIDATETGDLTYLINDLGKAFTIDGLGNKMRDWCDAADLPQCSSHGLRKAA 305 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341 A I A+ GATA EL A +GW ++ AETY + A + R+ Sbjct: 306 AVILAENGATAPELCAIFGWSKLETAETYIRQAQSRIMVSNAFSRLDE 353 >gi|146340556|ref|YP_001205604.1| putative phage integrase [Bradyrhizobium sp. ORS278] gi|146193362|emb|CAL77378.1| putative phage integrase [Bradyrhizobium sp. ORS278] Length = 358 Score = 282 bits (721), Expect = 6e-74, Method: Composition-based stats. Identities = 97/347 (27%), Positives = 163/347 (46%), Gaps = 8/347 (2%) Query: 5 LRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP 64 RLPP V + G + Y +R G G R++LP P F AY +A+ G+ R Sbjct: 4 RRLPPNVERNVV-KGHVYYAYRIGKGPRVKLPDPSSEEFGAAYQAAIQGAAQTRP--APS 60 Query: 65 RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124 + P +L LI+ Y S + SL +S+ + + + G +T + I + + Sbjct: 61 QDAPQSLGALIASYYDSDEFRSLRASSKEGYRRRLELMRAAHGHRSVGGLTRERIEAKIL 120 Query: 125 S-RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 + P + + L +R+L + A +++ +NP ++R K ++ IR WT ++ F+ Sbjct: 121 KPLSNKPGARLDTLKKLRILIRHAKALKWLKVNPSEGIKRGK--SKEIRGWTDNELAAFE 178 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243 + W G++ R A+E +L G +D+ N +F +KT + V+ D + Sbjct: 179 ARWPFGTRQRAAYEMMLNVGTARADTHLTTWTQADNEVFEYTRRKTDVAVLVQQADSLCQ 238 Query: 244 LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG--VNKSAHGVRKFSATISADAG 301 LA P T + + + FS W + T AG ++ HG+RK + ADAG Sbjct: 239 ALAALPRRHVTILVTEWGKPFSVDGFSGWMRDAMTAAGLPLDCKPHGLRKTLGRMLADAG 298 Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348 ATAHE+MA G T+ +AE YT+ ADR R G + ++ + P Sbjct: 299 ATAHEIMAALGHMTLAEAERYTREADRRRGGKRAIVKLEDHKANRIP 345 >gi|254559697|ref|YP_003066792.1| phage integrase [Methylobacterium extorquens DM4] gi|254266975|emb|CAX22775.1| phage integrase [Methylobacterium extorquens DM4] Length = 320 Score = 281 bits (720), Expect = 9e-74, Method: Composition-based stats. Identities = 80/316 (25%), Positives = 139/316 (43%), Gaps = 12/316 (3%) Query: 44 IPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII 103 + Y L G P+R+ + P P + L Y S + SL V++R D+I Sbjct: 1 MNKYYDCLDGKIPERKSRSVP-AAPGSFAALRLAYLGSPEFKSLDVSTRAWQRRALDEIS 59 Query: 104 RKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER 163 G + +H+R+ ++ TP++A L +++ LFKWA + +P +V+ Sbjct: 60 EAHGTKRVAMMQARHVRTLRNGKRETPAAANTMLKALKALFKWANENGRASSDPTRNVDF 119 Query: 164 PKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS 223 K +G PW+ +++ +++ G+ RLA E LLY+ R D R G +L F Sbjct: 120 LKYAKKGFHPWSPSEVEAYEAAHLVGTTARLALELLLYTAGRREDVVRFGPHNLAAGRFR 179 Query: 224 IKTQKTGTI----ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK 279 K I + + + +A F + + + F FK + Sbjct: 180 FVQGKNEDRAPVLIDIPVHPDLAEAIAAAQPSGAVFILTHYGRPFTPNGFGNRFKKWCIQ 239 Query: 280 AGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS-- 336 AG+ + SAHG RK +A A GATAH++M+ G +++ + E YT+ A R ++ Sbjct: 240 AGLPHCSAHGCRKAAAARLATRGATAHQIMSVTGHQSLAEVERYTRSALRAQMADTAMAL 299 Query: 337 ----RRISSVVDSDDP 348 R S + ++ P Sbjct: 300 LPDRRSAGSTIPANRP 315 >gi|260433594|ref|ZP_05787565.1| phage integrase family protein [Silicibacter lacuscaerulensis ITI-1157] gi|260417422|gb|EEX10681.1| phage integrase family protein [Silicibacter lacuscaerulensis ITI-1157] Length = 374 Score = 279 bits (714), Expect = 4e-73, Method: Composition-based stats. Identities = 74/330 (22%), Positives = 132/330 (40%), Gaps = 8/330 (2%) Query: 16 TRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75 RHG + +R F Y +AL +++ + R P T L+ Sbjct: 17 DRHGNRRWRYRCKGFSAELGTDYGSDEFERRYQAALN-HQKEKQANGAGRSVPGTFDDLV 75 Query: 76 SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQ 135 + + + + L ++ + + + + R+ G + +H+ TP+ A + Sbjct: 76 ARFYQ-LKFPELEEITKRDYRAVIEPLRRQHGHKRVAGMRQRHVLEIKAQLSSTPAQANK 134 Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA 195 L + L K AV+ E+ + NP VE + + G WT++++ +F + GS LA Sbjct: 135 TLKRLSQLMKLAVQLEWRSDNPVSGVEFYQTGSSGYHTWTEDEIARFYAKHERGSLAYLA 194 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-----GTIITVELPDGFMKLLAMTPI 250 +LY+G D+ G +++ + KT G + + + L P Sbjct: 195 MTLMLYTGASRKDAVALGRGNIRGGRLIYRRSKTRKNPNGIEVNIPVHPTLADALETVPE 254 Query: 251 GKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMA 309 G TF N KQ + + KAG+ S+HG+RK A+AG T E+M+ Sbjct: 255 GAFTFLETNRKQARSPNGLGNDMREWCDKAGLPMCSSHGLRKAICRRIAEAGGTPFEIMS 314 Query: 310 TYGWKTVDQAETYTKGADRIRLGIKNSRRI 339 G T+ A+ Y + R L R+ Sbjct: 315 VSGHITLAMAQHYCEAFGRKNLADSAVHRL 344 >gi|146276197|ref|YP_001166356.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17025] gi|145554438|gb|ABP69051.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17025] Length = 375 Score = 277 bits (708), Expect = 2e-72, Method: Composition-based stats. Identities = 93/342 (27%), Positives = 148/342 (43%), Gaps = 7/342 (2%) Query: 9 PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68 P VTK RHGK+ + FRK + LP P+ S + Sbjct: 16 PGVTKVVDRHGKVRWRFRKKDRADVYLPGPYASAAFR--AAYEAAVAGAATPAARSTAAY 73 Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH 128 +L WLI Y S + +L+ R D + +G + ++ T+H+ + + ++K Sbjct: 74 GSLAWLIETYLTSPRFQNLSETRRKRLRPDLDWLRENAGKLPFNRLATRHVEA-LMAKKA 132 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVA--INPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 P +A ++ +LF +A++ E NP +R K +G WT ++ QF ++ Sbjct: 133 GPWAANMIKKALSLLFNYAIKNEICDQKHNPATLADRRKVNPDGWHAWTSAEIAQFLAYH 192 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246 EG+ RLA +L +G D R G Q++ + +K+ I E+ L Sbjct: 193 GEGTPQRLACLLILNTGAARGDLIRLGWQNVNGGRIRYRRRKSEVIGDYEILPELAAELR 252 Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAH 305 P + F + N + F+ WFK AG+ + SAHGVRK AT AD+G + Sbjct: 253 HVPPAQMLFLMLN-GRPFKPDSFTDWFKRACVAAGLPHCSAHGVRKGQATNIADSGGSEW 311 Query: 306 ELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347 E+M+ T +A TYTK A+R RL R+S Sbjct: 312 EVMSFLAHATPHEAATYTKKANRGRLADSGLGRLSGAKAEQK 353 >gi|146276881|ref|YP_001167040.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17025] gi|145555122|gb|ABP69735.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17025] Length = 362 Score = 276 bits (706), Expect = 3e-72, Method: Composition-based stats. Identities = 86/339 (25%), Positives = 151/339 (44%), Gaps = 14/339 (4%) Query: 9 PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHE-STFIPAYMSALTGSTPKREYINSPRKK 67 P+V + T G+I + F K G R LP P + F+ AY +AL + R + Sbjct: 9 PYV-RPNTVKGRIYWKFEK-DGFRCNLPGPWGFAEFVAAYEAALNHAKAPR----ASTAI 62 Query: 68 PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK 127 TL WLI +Y S + +L+ + + + D + ++G + + ++ +H+ + ++K Sbjct: 63 EGTLSWLIEQYLGSLRFQNLSDSRKRTIRHELDWLREQAGRYHFARLEVRHVEK-LMTKK 121 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 P++A +M +L +A ++ Y NP E+ K +G W +E++++F Sbjct: 122 AGPTAANTVKKNMSMLCNFASKKLGYKGPNPAKFAEKLKTNPDGYHTWNEEEVERFLDRH 181 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246 G++ RL L +G+ D R G QH++ + + KT + + L Sbjct: 182 GPGTKARLVILLALNTGMARQDLARVGRQHVKAGRIAYRRGKTSVAADLPILPELAVELE 241 Query: 247 MTPI---GKETFFINNDKQK--MNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAG 301 + FI DK+ WF+ + +A V + HG+RK AT ADAG Sbjct: 242 AALANWSDGQMLFITQDKRPVGYTPESLGNWFRDRCAEANVPGALHGLRKAGATRLADAG 301 Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340 AT E+ + K A Y K A+R RL +++ Sbjct: 302 ATEWEIASYLAHKDTKTAAIYVKKANRARLADSGFAKLT 340 >gi|312114649|ref|YP_004012245.1| integrase family protein [Rhodomicrobium vannielii ATCC 17100] gi|311219778|gb|ADP71146.1| integrase family protein [Rhodomicrobium vannielii ATCC 17100] Length = 312 Score = 268 bits (685), Expect = 9e-70, Method: Composition-based stats. Identities = 85/310 (27%), Positives = 142/310 (45%), Gaps = 7/310 (2%) Query: 3 PSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYP-HESTFIPAYMSALTGSTPKREYI 61 P+ + +V +++ R+GK Y+ + R+ L P F+ Y +A T E Sbjct: 4 PAQQSFKYVRRKKGRNGKEHLYYEEPGKERVALRGPIGSPAFLADYNAA----TEAEELP 59 Query: 62 NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121 PR +L L++ Y+ S + +LA +++ ++ GD D R + I Sbjct: 60 KRPRAAAYSLTALVAAYQGSQRFRALAPSTQAVRRRIMSRLAAVYGDGDIRSMKRGDIVR 119 Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 E P A L + L K A+ + NP + RP+ KT+G WT+ ++ Sbjct: 120 MTEKLASGPEGARSLLKLTQQLVKLAIDLGWRDDNPVRDISRPRIKTDGRHCWTEAEIAA 179 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241 ++ W G++ RLA E LL +G R D R +H++ + +KT + + Sbjct: 180 YRKRWDVGTRQRLALELLLQTGQRKGDVVRLSREHVKGGRLKLTQEKTHVCVDAAIKPEL 239 Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISAD 299 +K++A T G +T ++ F F+A +AG+ SAHG+RK A A+ Sbjct: 240 LKIIAATVTGVQTLLVSTKGTPYGTKAFCGVFRAWCDEAGLPPECSAHGLRKAFARRMAE 299 Query: 300 AGATAHELMA 309 AGATAHE+MA Sbjct: 300 AGATAHEIMA 309 >gi|83945755|ref|ZP_00958099.1| phage integrase [Oceanicaulis alexandrii HTCC2633] gi|83850845|gb|EAP88706.1| phage integrase [Oceanicaulis alexandrii HTCC2633] Length = 310 Score = 268 bits (684), Expect = 1e-69, Method: Composition-based stats. Identities = 82/303 (27%), Positives = 139/303 (45%), Gaps = 8/303 (2%) Query: 44 IPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII 103 + AY AL +TP + + T+ LI +Y S+ + +L +++ ++ S + Sbjct: 1 MAAYAQALA-NTPLETDLAKSTARKGTIDRLIEDYYHSSAFDTLETSTQRTYRSSLEPFR 59 Query: 104 RKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER 163 G R + T+H+ + + P++A + L ++ +F AVRQE NP ++ Sbjct: 60 NTYGHMPVRTVQTRHLERILFDLREKPTAANKLLKRLKTIFDLAVRQEIRHDNPAKPIKA 119 Query: 164 PKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN---- 219 K ++G WT+ +++ FK+ + GS+PRLA LL +G R SD R G Q + + Sbjct: 120 RKVDSDGFHAWTEAEIEAFKTAYPSGSKPRLALALLLCTGQRGSDVARMGPQDIVDIQGG 179 Query: 220 -NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKAT 278 +K QKT T + + + LA F + + F WF +A Sbjct: 180 SRAIRVKQQKTKTPLLIPILPELAVELAARNGKHMVFLTTEYGKAFSVKGFQQWFAERAK 239 Query: 279 KA--GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336 A +AHG+RK A A+AGAT H + + G KT+ + YT G D+ +L Sbjct: 240 AATGNPKCTAHGLRKACAYRLAEAGATVHMIQSITGHKTLAEVARYTAGRDQFKLASAAQ 299 Query: 337 RRI 339 + Sbjct: 300 ALL 302 >gi|126737075|ref|ZP_01752810.1| Integrase [Roseobacter sp. SK209-2-6] gi|126721660|gb|EBA18363.1| Integrase [Roseobacter sp. SK209-2-6] Length = 332 Score = 267 bits (682), Expect = 2e-69, Method: Composition-based stats. Identities = 83/332 (25%), Positives = 141/332 (42%), Gaps = 16/332 (4%) Query: 8 PPFVTKERTRHGKIIYYFRKGHGRRIRLPY-PHESTFIPAYMSALTGSTPKREYINSPRK 66 F T +R G++ YFRK GR +RLP P+ + Y + G + Sbjct: 4 KKFTTTKRV-KGRLYQYFRK-DGRYVRLPDDPNSEEYDREYWRLMRGGGALSQRF----- 56 Query: 67 KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126 T + LI Y++S W LA ++ + + + G D K+ I + Sbjct: 57 ---TFEKLIQSYKRSPRWEGLAPRTKADYSKVLEYLAGTIGQKDPTKMRRSTIIEAQMAN 113 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 KH A + +LF+ AV ++ NP +E+ K EG +PW K + F+ Sbjct: 114 KHRARFANYIPHMLSILFEHAVDLDWQRDNPAKGIEKIKT-GEGHKPWPKPAVATFRKN- 171 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246 RLAFE L +G R SD R ++++ + KTG + + D +L Sbjct: 172 -VRGLERLAFELALGTGQRASDLTRMKWSDIEDDGIWVTQGKTGVRLWIPFTDSLRAILD 230 Query: 247 MTPIGKETFFINND-KQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATA 304 TP + +++D +++ F + G+ HG+R +A A+AG T Sbjct: 231 ETPRKSLHWILSDDFGRQLGYDYIQKKFLKARKELGLEGYGFHGLRYSAAGELAEAGCTD 290 Query: 305 HELMATYGWKTVDQAETYTKGADRIRLGIKNS 336 H++ A G K++ + Y+K A++ RL + Sbjct: 291 HQIAAITGHKSLSMIQKYSKSANQKRLAQQAQ 322 >gi|92118356|ref|YP_578085.1| phage integrase [Nitrobacter hamburgensis X14] gi|91801250|gb|ABE63625.1| phage integrase [Nitrobacter hamburgensis X14] Length = 359 Score = 263 bits (673), Expect = 3e-68, Method: Composition-based stats. Identities = 90/348 (25%), Positives = 154/348 (44%), Gaps = 10/348 (2%) Query: 5 LRLPPFVTKERTRHGKIIYYFRKGHGRRIRLP-YPHESTFIPAYMSALTGSTPKREYINS 63 +LPP V + G + FR G G RI+LP P+ F AY A+ + Sbjct: 4 RKLPPNVERNVV-KGHVYLSFRVGKGPRIKLPPDPNSDEFRAAYAEAI---GKTSQAPTP 59 Query: 64 PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123 + ++ LI Y S + +L S+ + S DQ+ ++ G +T + I++ + Sbjct: 60 AKAAERSIGALIIRYLSSTAFKALRNTSKQGYRSRIDQMRKEHGHRSVSGLTKERIQTQI 119 Query: 124 -ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 + TP +A+ L +R+L + A E++ +P ++RPK ++ IR WT + F Sbjct: 120 LDPLADTPGAALDTLKKLRILIRHARDIEWLNTDPSDGIKRPK--SKEIRSWTDSECTAF 177 Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242 + W G++ R A+E +L G +D R + F QKTG + + + Sbjct: 178 EKRWKVGTRQRAAYELMLNVGTARADVHRVTWNQFDEDNFEYSRQKTGVEVAMTMAKRCR 237 Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG--VNKSAHGVRKFSATISADA 300 + P T + FS + + AG ++ HG+RK AD Sbjct: 238 DAVYALPRKHITVLNTEFGKPFTVDGFSGFMRDAIKAAGLPLDCRPHGLRKTLGRRLADR 297 Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348 G +AH++MA G T+ +AE YT+ ADR R G + + + ++ P Sbjct: 298 GVSAHDIMAALGHTTLGEAERYTREADRRRGGRRAGKALDDQTENKTP 345 >gi|307944703|ref|ZP_07660042.1| putative integrase family protein [Roseibium sp. TrichSKD4] gi|307772130|gb|EFO31352.1| putative integrase family protein [Roseibium sp. TrichSKD4] Length = 392 Score = 263 bits (672), Expect = 3e-68, Method: Composition-based stats. Identities = 88/348 (25%), Positives = 159/348 (45%), Gaps = 22/348 (6%) Query: 1 MTPSLRLPPFVTKERTRHGKIIYYFR-KGHGRRIRLPYP-HESTFIPAYMS----ALTGS 54 +TP ++ E R +YY + + GR +R+ P S F P Y AL+ Sbjct: 42 VTPHANKAKYLL-EMPRKSGPVYYVQTRKGGRALRIQSPADSSEFWPEYGRLVGRALSDP 100 Query: 55 TPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKI 114 P R K + LI+ YR+S + SL N++ ++ ++I G ++R + Sbjct: 101 GPISPTTACGRHK---IAQLINAYRQSRDFTSLKPNTQKTYSCALNKIADLFGIREFRTL 157 Query: 115 TTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174 + + IR +++ +A QFL +R L W ++ Y P ++ + G W Sbjct: 158 SRQDIRLAMDNMPI--YAANQFLQQIRQLNDWCDQRGYTDTFPAAGIKSHGKSRTGFPAW 215 Query: 175 TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT 234 ++E++ + + G+Q RL + L ++G+R D R G H+++ +I QK G +T Sbjct: 216 SQEEVDTYLTAHPIGTQARLMIDLLRFTGMRVGDIIRLGPDHIRDGFIAITLQKNGVPVT 275 Query: 235 VELPDGFMKLLAM-TPIGKETFFINNDKQK--MNATQFSIWFKAKATKAGVNKSA----- 286 + L + TP G +TF + ++ ++ F+ F+A AG+ +A Sbjct: 276 IPLNPDLEVSIDATTPDGAKTFLTLDRFKRAFSSSKYFAQTFRAHCRAAGLEGTAARRAV 335 Query: 287 --HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 HG+RKF+ + G T E A +GW+ + Y++ DR R+G Sbjct: 336 SGHGLRKFALISVLENGGTIREAQALFGWRDAAMVQHYSEELDRERVG 383 >gi|222148446|ref|YP_002549403.1| phage-related integrase [Agrobacterium vitis S4] gi|221735434|gb|ACM36397.1| phage-related integrase [Agrobacterium vitis S4] Length = 343 Score = 259 bits (663), Expect = 3e-67, Method: Composition-based stats. Identities = 77/336 (22%), Positives = 145/336 (43%), Gaps = 16/336 (4%) Query: 19 GKIIYYFRKGHGRRIRLP---YPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75 G + Y R + R+ P + F Y A G P S KP ++ WL+ Sbjct: 4 GNVRYRVRVIGNPKQRIRIFCLPGDEDFSRQYTLARYGEQPVPLKKASEVVKPRSIGWLV 63 Query: 76 SEYRKSAH----WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131 Y + + + + ++I I + + TP+ Sbjct: 64 HSYFEYMEQRVKARLSSAKTLKKKRNLLARLIED--PDRIMIIPQPKLIEMQDKMASTPA 121 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191 A F+ S+ V+++WA+++ ++ NP ++R +K +G PW D+++F ++ GS+ Sbjct: 122 QADAFIESISVMYEWAIKRGHLKTNPAKGIDRIYKKGDGATPWKSADVKRFFAYHKPGSK 181 Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQH--LQNNIFSIKT---QKTGTIITVELPDGFMKLLA 246 P +A LL++G R D G +H + + + +++ +K + +T+ L + Sbjct: 182 PFIAMSILLWTGCRIEDLTFLGPRHECILDGLEALRWVPAKKGSSEVTIPLLKPLKAAIH 241 Query: 247 MTPIGKETFFINNDKQKM-NATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATA 304 + ET+ + + + S FK AG+N SAHGVRK A + A+ G + Sbjct: 242 SQAVIAETYIVARGNKPFASGDSMSAMFKRWCIDAGLNHLSAHGVRKGLAELLAEQGCSQ 301 Query: 305 HELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340 +E+MA G +E YT+ +R +L + R+ Sbjct: 302 YEIMAILGHSEAKTSEVYTRRVERWKLAQQAMDRLD 337 >gi|255262833|ref|ZP_05342175.1| phage integrase family protein [Thalassiobium sp. R2A62] gi|255105168|gb|EET47842.1| phage integrase family protein [Thalassiobium sp. R2A62] Length = 336 Score = 258 bits (659), Expect = 1e-66, Method: Composition-based stats. Identities = 68/344 (19%), Positives = 127/344 (36%), Gaps = 13/344 (3%) Query: 4 SLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS 63 LP V ++ R+G +Y+ R+G + L F Y S L+G P Sbjct: 3 KRELPKHVYRQ--RNG--LYFQRRGWKSQKFLAEFGTPEFWTEYASILSGERP------V 52 Query: 64 PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123 + + K LI Y +S+ + L + + ++ Y GD + + K + Sbjct: 53 SKITARSFKALIKSYHRSSRYTQLKPRTALDYDKYLRFFEDVMGDANPVNMKRKDVIRLR 112 Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 +S P A L +RVL + V + +NP V K + PW +E + Q++ Sbjct: 113 DSNADKPYFANYSLRVLRVLLEHCVDLGWREMNPARGVSEIKTVKKARSPWPQELLDQYR 172 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243 G++ RLA E + +G R D +Q+ F+++ KTG + + + Sbjct: 173 IACPLGTRERLAMELCVGTGQRIGDVIEMRWSDIQDGGFAVRQNKTGKQLWIPILPELQA 232 Query: 244 LLAMTPIGKETFFINNDKQ-KMNATQFSIWFKAKATKAG-VNKSAHGVRKFSATISADAG 301 L N + + + K + ++ H R +A +AG Sbjct: 233 ALDAASRHSVFILTNERGTNRWSYRGVAQAVKKVRDQINALDFDIHSWRYNAACELVEAG 292 Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDS 345 + A G ++ + YTK + I+ + + + Sbjct: 293 CGDDLVAAVTG-QSAAMVQHYTKQVRQRVRAIQAQQMRTEQKQN 335 >gi|163736741|ref|ZP_02144160.1| phage integrase [Phaeobacter gallaeciensis BS107] gi|161390611|gb|EDQ14961.1| phage integrase [Phaeobacter gallaeciensis BS107] Length = 333 Score = 257 bits (657), Expect = 2e-66, Method: Composition-based stats. Identities = 77/336 (22%), Positives = 139/336 (41%), Gaps = 20/336 (5%) Query: 9 PFVTKERTRHGKIIYYFRKGHGRRIRLP-YPHESTFIPAYMSALTGSTPKREYINSPRKK 67 +VT +T G++ YYFR+G + RLP P F AY + +G S ++ Sbjct: 8 KYVT-TKTVKGRVYYYFRRGETYQ-RLPNDPDSQEFDNAYWAIRSG--------RSQKQT 57 Query: 68 PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK 127 TT + LI Y ++ + + + + I K+G D+ K+ +++ + ++ Sbjct: 58 KTTFEALIVSYYQTPEFKDRKPRVQQEYRRTLELIREKNGPKDFTKLRRRNVIAARDAYA 117 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 T A + + +L + A+ E++ NP V++ K +PW ++ F+++ Sbjct: 118 DTWRKANAMVEMISILSRHAIDLEWITANPASGVKKLK--GGEYQPWPAAKLRAFEAYCE 175 Query: 188 EGSQ--PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245 GS A+ + +G R D H S+ +KT + V P+ L Sbjct: 176 SGSLEWELTAYMLGIGTGQRIGDVIGMEWAHYDGQFISVVQEKTAARLWVACPEFLRTYL 235 Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA---HGVRKFSATISADAGA 302 P FI + +I + A + + A HG R +A A+AGA Sbjct: 236 DNLPRSGR--FIIAQSLHKGVAKRTIQQRVMAVREKIGAQAFVIHGWRYTAAVHLAEAGA 293 Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRR 338 + E+ A G KT++ + Y A++ RL R Sbjct: 294 SDSEIQAVTGHKTLEMVKKYRNQANQKRLSQAAQAR 329 >gi|254476705|ref|ZP_05090091.1| phage integrase [Ruegeria sp. R11] gi|214030948|gb|EEB71783.1| phage integrase [Ruegeria sp. R11] Length = 332 Score = 256 bits (655), Expect = 3e-66, Method: Composition-based stats. Identities = 79/327 (24%), Positives = 134/327 (40%), Gaps = 15/327 (4%) Query: 12 TKERTRHGKIIYYFRKGHGRRIRLPY-PHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70 T +T G+ YFRK GR +RLP P+ + Y + G P + T Sbjct: 7 TSSKTIKGRTYQYFRK-DGRYVRLPDDPNSEEYDREYWRLMRGDGPLSQRY--------T 57 Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130 + LI Y++S W SLA +R + + I K G D K+ I + +H Sbjct: 58 FEKLILSYKQSPRWESLAPRTRADYSRVLEYISDKLGSKDPTKMRRSTIIDAQMANRHRA 117 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 A + +LF+ ++ ++ NP + + K EG RPW + ++ Sbjct: 118 RFANYIPHMLSILFEHSIDLDWQRDNPAKGISKIKT-GEGHRPWPTSAITAYRKH--ANG 174 Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPI 250 L FE L +G R SD R +H+++ + KT + + ++ + Sbjct: 175 LALLIFELALGTGQRASDLTRMEWEHIEDGGIWVTQGKTKARLWLPFTARLAAVIDASQK 234 Query: 251 GKETFFINND-KQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELM 308 F + + ++N Q A A + S HG+R +A A+AG T ++ Sbjct: 235 TSAKFILADRFGNQLNYDQLQKKVMAVRRIANLTEYSLHGLRYSAAGELAEAGCTDQQIA 294 Query: 309 ATYGWKTVDQAETYTKGADRIRLGIKN 335 A G K++ + Y+KGA + RL + Sbjct: 295 AITGHKSLSMVQKYSKGASQKRLAQEA 321 >gi|121602161|ref|YP_989344.1| integrase [Bartonella bacilliformis KC583] gi|120614338|gb|ABM44939.1| integrase [Bartonella bacilliformis KC583] Length = 250 Score = 254 bits (650), Expect = 1e-65, Method: Composition-based stats. Identities = 88/247 (35%), Positives = 139/247 (56%), Gaps = 3/247 (1%) Query: 101 QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160 +++ G Y+ I KHI +GVE RK TP++A FL ++ LFKWA+ Q + N L Sbjct: 2 KVLDSIGHLSYKVIQKKHIIAGVERRKETPATAQNFLKALNSLFKWAMEQGLLEKNSTLG 61 Query: 161 VERPKRK-TEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN 219 V+ P K +G W++ D+ ++ W G+ R+ + LLY+GLR D+ R G + + + Sbjct: 62 VKAPPLKNKDGFIVWSEADIDKYYYHWPLGTHERVWIDILLYTGLRRGDAIRIGWKDVTD 121 Query: 220 NIFSIKTQKTGTI--ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKA 277 NI IKT+K+ + + + + L + PIG+ETF + +K+ F F+ Sbjct: 122 NIIHIKTEKSKFQMDVFLPILPELAETLEIGPIGEETFICGKNGKKLTKEGFGNVFREAC 181 Query: 278 TKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 A V KSAHG+RK +AT +A+AGAT +L A +GW + A YTK ADR RL ++ + Sbjct: 182 NVANVKKSAHGLRKLAATRAANAGATVAQLKAIFGWTEDNMASLYTKSADRKRLALETIK 241 Query: 338 RISSVVD 344 ++ + D Sbjct: 242 KLQKMRD 248 >gi|254476808|ref|ZP_05090194.1| phage integrase [Ruegeria sp. R11] gi|214031051|gb|EEB71886.1| phage integrase [Ruegeria sp. R11] Length = 333 Score = 253 bits (647), Expect = 2e-65, Method: Composition-based stats. Identities = 74/334 (22%), Positives = 134/334 (40%), Gaps = 16/334 (4%) Query: 9 PFVTKERTRHGKIIYYFRKGHGRRIRLP-YPHESTFIPAYMSALTGSTPKREYINSPRKK 67 +VT +T G++ YYFR+G + RLP P F AY + +G + +K Sbjct: 8 KYVT-TKTVKGRVYYYFRRGETYQ-RLPNDPDSQEFDDAYWAIRSG--------RAKKKT 57 Query: 68 PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK 127 TT + LI Y ++ + R + + I K+G D+ K+ + + + ++ Sbjct: 58 KTTFEALIVSYYQTPEFKDRKPRVRQEYRRTLELIREKNGPKDFTKLRRRDVIAARDAYS 117 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 T A + + +L + A+ E++ NP V++ K +PW ++ F+++ Sbjct: 118 DTWRKANAMVEMISILSRHAIDLEWITANPASGVKKLK--GGEYQPWPAAKLRAFEAYCE 175 Query: 188 EGSQ--PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245 + A+ + +G R D H S+ +KT + V P+ K L Sbjct: 176 NNALEWELTAYMLGVGTGQRIGDVIGMEWAHYDGQFISVVQEKTAARLWVACPEFLRKYL 235 Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATA 304 P + + + A + G HG R +A A+AGA+ Sbjct: 236 DGLPRKGRFIIAQSLHKGVAKRTIQQRVMAVRKEIGAQAFVIHGWRYTAAVHLAEAGASD 295 Query: 305 HELMATYGWKTVDQAETYTKGADRIRLGIKNSRR 338 E+ A G KT++ + Y A++ RL R Sbjct: 296 SEIQAVTGHKTLEMVKKYRSQANQKRLSQTAQAR 329 >gi|99081169|ref|YP_613323.1| phage integrase [Ruegeria sp. TM1040] gi|99037449|gb|ABF64061.1| Tyrosine recombinase xerD [Ruegeria sp. TM1040] Length = 333 Score = 253 bits (646), Expect = 3e-65, Method: Composition-based stats. Identities = 75/334 (22%), Positives = 132/334 (39%), Gaps = 16/334 (4%) Query: 9 PFVTKERTRHGKIIYYFRKGHGRRIRLP-YPHESTFIPAYMSALTGSTPKREYINSPRKK 67 +VT +T G++ YYFR+G + RLP P F AY + +G + +K Sbjct: 8 KYVT-TKTVKGRVYYYFRRGETYQ-RLPNDPDSQEFDDAYWAIRSG--------RAKKKA 57 Query: 68 PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK 127 TT + LI Y ++ + + + + I K+G D+ K+ + + + ++ Sbjct: 58 KTTFEALIVSYYQTPEFRDRKPRVQQEYRRTLELIREKNGPKDFTKLRRRDVIAARDAYA 117 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 T A + + +L + A+ E++ NP V+ K PW +Q F++F Sbjct: 118 DTWRKANAMVEMISILSRHAIDLEWITANPASGVK--KLTGGEYEPWPDAKLQAFEAFCK 175 Query: 188 EGSQ--PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245 + A+ + +G R D H ++ +KT + V P + L Sbjct: 176 KHDLEWELTAYMLGVGTGQRIGDVVGMEWAHYDGQFIAVVQEKTAARLWVACPTFLKRYL 235 Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG-VNKSAHGVRKFSATISADAGATA 304 P + + + A K G V HG R +A A+AGA+ Sbjct: 236 DGLPRRGRFIIAQSLHKGVAKRTIQQRVMAVREKIGAVGYVIHGWRYTAAVHLAEAGASD 295 Query: 305 HELMATYGWKTVDQAETYTKGADRIRLGIKNSRR 338 E+ A G KT++ + Y A++ RL R Sbjct: 296 SEIQAVTGHKTLEMVKKYRSQANQKRLSKSAQAR 329 >gi|260462715|ref|ZP_05810921.1| integrase family protein [Mesorhizobium opportunistum WSM2075] gi|259031621|gb|EEW32891.1| integrase family protein [Mesorhizobium opportunistum WSM2075] Length = 432 Score = 253 bits (646), Expect = 3e-65, Method: Composition-based stats. Identities = 84/366 (22%), Positives = 146/366 (39%), Gaps = 32/366 (8%) Query: 9 PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTG-STPKREYINSPRKK 67 P ++ RHGK+ + +R R + LP P + F AY +A+ G PK + P Sbjct: 6 PGLSSYTDRHGKLRWRYRTKE-RVVSLPAPTQPGFKDAYQAAVEGRKVPKAPVVRMPGSA 64 Query: 68 -PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII---------RKSGDFDYRKITTK 117 P T + S W +L S+ + ++ + D + + Sbjct: 65 LPGTFGAAFQRLKISVKWLALDEASKRKNKRLIEEFLVLRVVPDHPLIWRDVPVKNLRRI 124 Query: 118 HIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177 HI + TP A L +R L A+RQ+++ I+P +VE + G + W++E Sbjct: 125 HIEELLGRFIATPHKAKHLLVGIRKLVYVALRQDWIEIDPTAAVEW-RPAYAGWKAWSRE 183 Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH-------LQN-----NIFSIK 225 M QF++ W G+ R + L+ G R D + + F I Sbjct: 184 AMAQFENRWQLGTAARTCYGLALWLGNRRGDVAGLRWDQRVTRRVFIDGVERHFDGFDIV 243 Query: 226 TQKT-----GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA 280 K G + V + ++L ET +N + +A + A Sbjct: 244 QGKNKGRTGGKRLFVPITPMLSEILDAADRRGETVLVNAYGEPFSAKSLTGMMAHWCKLA 303 Query: 281 GVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRR 338 G+ K + HG+RK A+A A+ ++M G +D AE Y++ A ++RL ++ R Sbjct: 304 GLPKGLTLHGLRKSLGVYLAEAEASTRQMMDVLGHDDIDHAELYSREASQVRLAVQGMDR 363 Query: 339 ISSVVD 344 + +V Sbjct: 364 VVRLVT 369 >gi|149915062|ref|ZP_01903591.1| Possible integrase/recombinase [Roseobacter sp. AzwK-3b] gi|149811250|gb|EDM71087.1| Possible integrase/recombinase [Roseobacter sp. AzwK-3b] Length = 329 Score = 253 bits (645), Expect = 4e-65, Method: Composition-based stats. Identities = 83/326 (25%), Positives = 152/326 (46%), Gaps = 15/326 (4%) Query: 29 HGRRIRLP-YPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSA----H 83 R+I L P F+ Y A G P+ + P +L WLI+++ KS Sbjct: 5 KSRKIALGVDPDHPEFMERYTRARNGKRPEIPR-EEDKAIPQSLSWLIAKFEKSMQERVR 63 Query: 84 WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVL 143 G++ + +++D++ GD ++ I +S TP +A + ++R L Sbjct: 64 AGAMHPGTLKQRSAFYDRLRAPYGDKHM-EMPRSKIIEIRDSMIATPGAADNMVKALRAL 122 Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSG 203 + W+V +V NP + + R T G PW+ +D++ FK S+GS LA +++ Sbjct: 123 YAWSVENGFVRSNPASGIGKINRGT-GATPWSIDDLRAFKDHHSKGSMAHLALTLFMFTA 181 Query: 204 LRCSDSCRAGVQH-LQNNIFSI----KTQKTGTIITVELPDGFMKLLAMTPIGKETFFIN 258 R SD G QH ++ + +K +TV + +A + T+ +N Sbjct: 182 CRISDVVILGRQHEIERGGITYLDWQPAKKGSARVTVPILPPLADAIAAQKVVGSTYLLN 241 Query: 259 NDKQKM-NATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTV 316 + +A F WF+ + +AG++ +S HG+RK + + A GAT + +MA +G Sbjct: 242 GHGKPFASAAAFGNWFRDRVREAGLDGRSPHGIRKAAGELMALQGATQYHIMAVHGHTQA 301 Query: 317 DQAETYTKGADRIRLGIKNSRRISSV 342 +E YT+G +R RL + ++++S+ Sbjct: 302 KTSEGYTRGVNRQRLAAEAMQKMASM 327 >gi|332186915|ref|ZP_08388656.1| phage integrase family protein [Sphingomonas sp. S17] gi|332012925|gb|EGI54989.1| phage integrase family protein [Sphingomonas sp. S17] Length = 357 Score = 250 bits (639), Expect = 2e-64, Method: Composition-based stats. Identities = 78/347 (22%), Positives = 135/347 (38%), Gaps = 21/347 (6%) Query: 9 PFVTKERTRHGKIIYYFRKGHGRRIRLPY-PHESTFIPAYMSALTGSTPKREYINSPRKK 67 VT RHGK+ FRK + + + P E F Y + L R I Sbjct: 6 KNVTVNPDRHGKLRARFRKTGRPAVYMKHLPDEKGFKEEYEALLA----NRPLIVVRPAV 61 Query: 68 PTTLKWLISEYRKSAHWGSLAVN-SRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126 P ++ L+S Y S + ++ + D + D +HI + + +R Sbjct: 62 PGSVGDLVSRYYASGDFKGRGTAETQARRKYLIDSFRQDVADDLVSDFGFEHIEAILLAR 121 Query: 127 KHTPS------------SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP-KRKTEGIRP 173 +A++ +R LF +A + +++ NP K+K G Sbjct: 122 TEKRWDETRKRMMGGEVAAVKLRKELRRLFAYAKKLKWIEQNPVEEAAPIGKQKLTGFHT 181 Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII 233 WT++++ QFK+ G++ RLA E +L++G R D+ G H+ + K + Sbjct: 182 WTEDEISQFKARHPIGTRARLALEIMLWTGQRRGDARLFGPAHVVRGKINFTAAKNQADL 241 Query: 234 TVELPDGFMKLLAMTP-IGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRK 291 + + + + IG TF + + F + +AG+ +AHG+RK Sbjct: 242 WLPIAPDLRRAIDAMDSIGLRTFLVTTAGKTFTKDGFGNKMREWCDEAGLPQCTAHGLRK 301 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRR 338 A + AT E+ A GWK + YT A++ L R Sbjct: 302 AIGRRMAQSQATQLEIKAVGGWKGDSEVAIYTAAAEQEGLADGAMSR 348 >gi|83311808|ref|YP_422072.1| integrase [Magnetospirillum magneticum AMB-1] gi|82946649|dbj|BAE51513.1| Integrase [Magnetospirillum magneticum AMB-1] Length = 335 Score = 250 bits (638), Expect = 3e-64, Method: Composition-based stats. Identities = 76/339 (22%), Positives = 135/339 (39%), Gaps = 17/339 (5%) Query: 9 PFVTKERTRHGKIIYYFRKGHGRRIRLPY-PHESTFIPAYMSALTGSTPKREYINSPRKK 67 +VT+ + H +Y+R+ RLP P F Y + Sbjct: 2 KYVTETKPGH----FYYRRNGRYWGRLPGLPGSIEFATEYARL----NASFADVGKTPAV 53 Query: 68 PTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126 P T ++ Y S + +L ++ ++ D + + G F I KH+ + Sbjct: 54 PGTFDAMVEAYLASGEYRQNLKQKTKDAYRYDLDILRTRFGKFRVADIEVKHVLKMRDFF 113 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPC--LSVERPKRKTEGIRPWTKEDMQQFKS 184 P A + ++RV+F W + + + NP V K K +PW + +F++ Sbjct: 114 ADKPGKANTLVRTLRVVFGWGIGRGLMKTNPADLKGVNVKKLKIGAHKPWAPAALAKFRA 173 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244 LAFE L +G R D R + + + + +KTG + + + + Sbjct: 174 EGQPHLV--LAFELGLATGQRQGDLIRLRWDDISDGVVHVAQEKTGKELWLPVSKHLAGV 231 Query: 245 LAMTPIGKETFFINNDKQKM-NATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGA 302 LA P T +N+ A + F A+ T+ G++ HG+RK +A AD G Sbjct: 232 LARAPRQAVTVLVNSRGTPWIKANPLAQAFGAEITRLGLDGLVFHGLRKTAAVALADVGC 291 Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341 + ++ A G ++ E YT+GAD+ RL ++ Sbjct: 292 STKQIAAVTG-QSDQMVEHYTRGADQKRLAKAAVVKLER 329 >gi|310815686|ref|YP_003963650.1| integrase/recombinase [Ketogulonicigenium vulgare Y25] gi|308754421|gb|ADO42350.1| integrase/recombinase [Ketogulonicigenium vulgare Y25] Length = 361 Score = 247 bits (630), Expect = 2e-63, Method: Composition-based stats. Identities = 91/334 (27%), Positives = 152/334 (45%), Gaps = 25/334 (7%) Query: 12 TKERTRHGKIIYYFRKGHGRRIRLPY--PHESTFIPAYMSALTGSTPKREYINSPRKKPT 69 K R GK YF++ ++LP + F+ AY A + + K Sbjct: 15 IKTVVRRGKTYRYFQRRGFPLVKLPDLPMDDPAFLRAYAEAKSANPEKSP------AAAG 68 Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129 + L+ KS H+ + +R F + D ++ + G+ R + ++HIR+ + Sbjct: 69 SFAALVRAALKSDHYSQSKLATRAMFRRHCDALVEEFGELPARGLRSRHIRANL----PK 124 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG-IRPWTKEDMQQFKSFWSE 188 +S L + R L + V + N L V PK K++G PWT++++ F++ W Sbjct: 125 STSQGHRLRTWRFLCSFGVATNLLERNEALDVAMPKAKSKGGHPPWTQDEIAAFRTRWPM 184 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE----LPDGFMKL 244 GS R AFE L +SG R SD+ R G ++ + + + KT + LPD L Sbjct: 185 GSATRAAFELLRFSGARISDAVRLGPGMVRGGVLTYRQVKTDGPAHIPWSCPLPDFAAHL 244 Query: 245 L--------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATI 296 A+ + + +++ + + + A +AG KSAHG+RK AT Sbjct: 245 SEDRAIMHHALEALAGQMTYLDARGKARSEKSLGTMIREAAMEAGFKKSAHGLRKSLATE 304 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 A+ GATAH++ A G +T+ + + YTK ADR R Sbjct: 305 LAEGGATAHQISAWTGHETLKEVDHYTKSADRRR 338 >gi|77462632|ref|YP_352136.1| putative tyrosine recombinase [Rhodobacter sphaeroides 2.4.1] gi|77387050|gb|ABA78235.1| Putative Tyrosine recombinase [Rhodobacter sphaeroides 2.4.1] Length = 341 Score = 242 bits (618), Expect = 5e-62, Method: Composition-based stats. Identities = 82/337 (24%), Positives = 146/337 (43%), Gaps = 18/337 (5%) Query: 9 PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68 P V + R R G + Y R+ R + F+ A+++ +R R + Sbjct: 3 PRVHRVR-RGGTVYKYHRRTRKELPRDVPEDDPRFVAAWLAE-----EQRAPTVRSRSQA 56 Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH 128 T+ Y S + L+ R + ++I + + + +HIR+ +E Sbjct: 57 GTIAAACEAYLGSRSYRELSDGYRPVIRRHVERIKEQGEKALLKDLLPRHIRADLEPL-- 114 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT-EGIRPWTKEDMQQFKSFWS 187 +P A L + R L ++ + + + +P V+R K G WT ED++ F++ W Sbjct: 115 SPPVASSRLKAWRKLAEFWLLKGMLDADPSEGVKRKKMGKVAGFTEWTAEDLEAFRARWP 174 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHL-QNNIFSIKTQKTGTIITVE-------LPD 239 G+ RLA E ++G RC D R G Q + ++ + + QKTG V L + Sbjct: 175 IGTAQRLALELYQWTGARCVDVIRLGPQMVGRDGVLTYVQQKTGNPAHVPWTCPAFGLEE 234 Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISA 298 L+ P+G + + + S WF A A +AG+ ++AHG+RK+ A Sbjct: 235 QRADLMRCLPVGSPVYMLTEYGKPRTQKGVSQWFSAAAREAGLESRTAHGLRKYRMNALA 294 Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335 + GA+ + + G T+ + + YT+ ADR R+ Sbjct: 295 EHGASVLVMQSWVGHTTLLEVQEYTRRADRRRVISGG 331 >gi|119386802|ref|YP_917857.1| phage integrase family protein [Paracoccus denitrificans PD1222] gi|119377397|gb|ABL72161.1| phage integrase family protein [Paracoccus denitrificans PD1222] Length = 335 Score = 241 bits (615), Expect = 1e-61, Method: Composition-based stats. Identities = 76/336 (22%), Positives = 135/336 (40%), Gaps = 16/336 (4%) Query: 4 SLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS 63 LP +V + R +Y+ R G +R+ P + F Y + G P + Sbjct: 2 KRSLPAYVYAKGKR--GYLYFCRWGKTQRMYA-APGTAEFAAEYALLMRGRPPAPKR--- 55 Query: 64 PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123 T+K LI +Y +S W +LA N++ S+ +F + +G D + T HI Sbjct: 56 ------TIKGLIQKYMESERWPALAQNTKKSYRRHFGYLEEVAGHIDPATLRTAHIYEMR 109 Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 ++ + TP+ A + + ++ L VR ++ NP VE+ K PW ++ F+ Sbjct: 110 DALRDTPTDANRKIGTLSTLLAHGVRIGWLDRNPAEGVEKLKGLRPPREPWPDTKIKAFR 169 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243 P L FE LL +G R D + +++ ++ QKTG I V D Sbjct: 170 G--EAAPLPLLIFEMLLGTGQRIGDVLKMRWDDIEDGGIWVRQQKTGAGIFVPFTDELAA 227 Query: 244 LLAMTPIGKETFFINNDKQKMNAT-QFSIWFKAKATKAGVNKSAHGVRKFSATISA-DAG 301 +L TP +T + + + + + + + + H +R +A A G Sbjct: 228 ILEQTPRQGDTIIAQPNGRPCSYSFAHKLVTEVRVKIDAMAWDIHALRHSAAAEIASLPG 287 Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 + +MA G + A Y++ AD + Sbjct: 288 MSIEHVMAITGHSSEQMARHYSRKADMRAKAREAQN 323 >gi|149915233|ref|ZP_01903761.1| phage integrase [Roseobacter sp. AzwK-3b] gi|149810954|gb|EDM70793.1| phage integrase [Roseobacter sp. AzwK-3b] Length = 325 Score = 240 bits (613), Expect = 2e-61, Method: Composition-based stats. Identities = 74/321 (23%), Positives = 130/321 (40%), Gaps = 18/321 (5%) Query: 4 SLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS 63 +LP +V R R G Y+ R +RI P + F Y L G + Sbjct: 3 KRQLPKYVYA-RGRKG-YPYFIRGNTCQRIFA-EPGSNAFWAEYNRLLNG---------A 50 Query: 64 PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123 P T+ LI Y +S W A N+R S+E F K G D I +H+ Sbjct: 51 PTAPKRTINKLIEHYMRSPDWAKKAHNTRKSYERSFLYFRDKIGLVDPASIRRRHVNDMR 110 Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAI-NPCLSVERPKRKTEGIRPWTKEDMQQF 182 ++ TP++A + + ++ VL A+ +V NP V++ T+ W + ++ F Sbjct: 111 DALSATPTTANRRVAALSVLMNHAIDIGWVEHVNPARGVKQL-DGTKTREAWPVDMVEAF 169 Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242 ++ + + L FE L+ +G R D +++N ++ KT + + + Sbjct: 170 RTAATGQT--LLLFELLIGTGQRIGDVLNMQWGQIEDNGIVVRQSKTKAEVWIPFTRRLL 227 Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG-VNKSAHGVRKFSATISADAG 301 +L TP + IN++ ++ W + G + HG+R +A+ A G Sbjct: 228 DMLNKTPRNAL-YIINHEGHRVAYNTAWKWVMDVRKQIGATDYDIHGLRHTAASELAALG 286 Query: 302 ATAHELMATYGWKTVDQAETY 322 T E+M+ G + Y Sbjct: 287 MTDEEIMSITGHTSAAMVRLY 307 >gi|146276876|ref|YP_001167035.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17025] gi|145555117|gb|ABP69730.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17025] Length = 294 Score = 236 bits (603), Expect = 3e-60, Method: Composition-based stats. Identities = 63/273 (23%), Positives = 121/273 (44%), Gaps = 7/273 (2%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133 +I +Y S + +L+ + + + D + ++G + + ++ +H+ + ++K P++A Sbjct: 1 MIEQYLGSLRFQNLSDSRKRTIRHELDWLREQAGRYHFARLEVRHVEK-LMTKKAGPTAA 59 Query: 134 IQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192 +M +L+ +A ++ Y NP E+ K +G W +E++++F G++ Sbjct: 60 NTVKKNMSMLYNFASKKLGYKGPNPAKFAEKLKTNPDGYHTWNEEEVERFLDRHGPGTKA 119 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPI-- 250 L L +G+ D R G QH++ + + KT + + L Sbjct: 120 HLVILLALNTGMARQDLARVGRQHVKAGRIAYRRGKTSVAADLPILPELAVELEAALANW 179 Query: 251 -GKETFFINNDKQK--MNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHEL 307 + FI DK+ WF+ + +A V + HG+RK AT ADAGAT E+ Sbjct: 180 SDGQMLFITQDKRPVGYTPESLGNWFRDRCAEANVPGALHGLRKAGATRLADAGATEWEI 239 Query: 308 MATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340 + K A Y K A+R RL +++ Sbjct: 240 ASYLAHKDTKTAAIYVKKANRARLADSGFAKLT 272 >gi|85707546|ref|ZP_01038619.1| Phage related integrase [Roseovarius sp. 217] gi|85667933|gb|EAQ22821.1| Phage related integrase [Roseovarius sp. 217] Length = 339 Score = 236 bits (602), Expect = 4e-60, Method: Composition-based stats. Identities = 77/347 (22%), Positives = 133/347 (38%), Gaps = 26/347 (7%) Query: 9 PFVTKERTRHGKIIYYFRKGHGRRI---RLP-YPHESTFIPAYMSALTGSTPKREYINSP 64 P++ + +T G+ YFR G ++ RLP P F+ AY + +G Sbjct: 7 PYL-EFKTVKGRDYIYFRLDRGSKVTRHRLPSNPDSEEFMQAYWAIRSG--------RKK 57 Query: 65 RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124 + TT L++E+ K+ + A +R ++ + + I K+G+ D ++ K + Sbjct: 58 VQSKTTWHNLVTEFYKTPGYLGKAKGTRENYRRHCEAIREKNGEKDVQRFKRKDALAVQR 117 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 + + T S A + + + +L K AV E++ NP V+ PK PW + + ++ Sbjct: 118 ALQDTWSKANERIAVLSILCKLAVDLEWIDRNPV--VDIPKLSGGEYEPWPDDKLTAYER 175 Query: 185 FWSEG--SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242 + + R +E + +G R D S+ KTGT +T+ P Sbjct: 176 YCDRHDLTDARTIYELCIGTGQRIGDCVAMRWDDFDGEFMSVVQDKTGTKLTIYCPARLQ 235 Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS-----AHGVRKFSATIS 297 L P N Q M + T + HG R +A Sbjct: 236 TYLCTLPRKGRHIMAKNLTQPMGKRAAQKAVEGVRTALDIMHGEARLVPHGWRYTAAVQL 295 Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344 +DAG E+ A G KT++ Y D+ S+R D Sbjct: 296 SDAGCDDAEIQAVTGHKTMEMVRKYRARRDQK----AASKRAQQKRD 338 >gi|294677620|ref|YP_003578235.1| phage integrase [Rhodobacter capsulatus SB 1003] gi|294476440|gb|ADE85828.1| phage integrase [Rhodobacter capsulatus SB 1003] Length = 356 Score = 236 bits (601), Expect = 5e-60, Method: Composition-based stats. Identities = 92/353 (26%), Positives = 156/353 (44%), Gaps = 18/353 (5%) Query: 9 PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68 V ++R R +++ Y R R LP H F+ A+ +A T Sbjct: 2 KGVRRQR-RGERVVKYHRASGIRLPDLPETH-PDFVAAWAAAEASLTGPAALARKAPVAA 59 Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH 128 TL I + S + L+ + FD + G + + ++HI + ++ K Sbjct: 60 GTLAAAIRAEKTSRPFAELSSLYQSILRKDFDAMEAAYGTAPLKGLRSRHIEADLD--KL 117 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 + +A + L + R + A R+ + +P + V R K KTEG WT+++++QF++ W Sbjct: 118 SADAANKRLKAWRRVMGGARRRGEIESDPSIEVRRIKVKTEGFPAWTQDEVEQFRARWPI 177 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLLAM 247 G+ R FE + ++G R +D+ R G ++ + S + KT V + A Sbjct: 178 GTVQRACFELVCWTGARTNDAVRLGPCNIDHGGVLSYRQSKTANPAMVPWSNPLPGYAAA 237 Query: 248 TPIGKETF------------FINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSAT 295 +ET F+ + + + A AGV KSAHG+RK+ T Sbjct: 238 WAAERETVKAALACLSGGFTFLEANGRVRSVKGLGNVISEAARGAGVEKSAHGLRKYRLT 297 Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348 A+AG +AH +MA G +T+ +AE YT+ ADR RL + + +VV P Sbjct: 298 AIAEAGGSAHAIMAWGGHQTLVEAEHYTRAADRRRL-VMGVEQGGNVVSPRSP 349 >gi|221638486|ref|YP_002524748.1| Tyrosine recombinase [Rhodobacter sphaeroides KD131] gi|221159267|gb|ACM00247.1| Tyrosine recombinase [Rhodobacter sphaeroides KD131] Length = 313 Score = 235 bits (599), Expect = 1e-59, Method: Composition-based stats. Identities = 74/306 (24%), Positives = 134/306 (43%), Gaps = 13/306 (4%) Query: 41 STFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD 100 P +++A + + S R + T+ Y S + L+ R + + Sbjct: 2 PEDDPRFVAAWLAEEQRAPTVRS-RSQAGTIAAACEAYLGSRSYRELSDGYRPVIRRHVE 60 Query: 101 QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160 +I + + + +HIR+ +E +P A L + R L ++ + + + +P Sbjct: 61 RIKEQGEKALLKDLLPRHIRADLEPL--SPPVASSRLKAWRKLAEFWLLKGMLDADPSEG 118 Query: 161 VERPKRKT-EGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL-Q 218 V+R K G WT ED++ F++ W G+ RLA E ++G RC D R G Q + + Sbjct: 119 VKRKKMGKVAGFTEWTAEDLEAFRARWPIGTAQRLALELYQWTGARCVDVIRLGPQMVGR 178 Query: 219 NNIFSIKTQKTGTIITVE-------LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI 271 + + + QKTG V L + L+ P+G + + + S Sbjct: 179 DGVLTYVQQKTGNPAHVPWTCPAFGLEEQRADLMRCLPVGSPVYMLTEYGKPRTQKGVSQ 238 Query: 272 WFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 WF A A +AG+ ++AHG+RK+ A+ GA+ + + G T+ + + YT+ ADR R Sbjct: 239 WFSAAAREAGLEGRTAHGLRKYRMNALAEHGASVLVMQSWVGHTTLLEVQEYTRRADRRR 298 Query: 331 LGIKNS 336 + Sbjct: 299 VISGGQ 304 >gi|3128300|gb|AAC16152.1| integrase/recombinase [Rhodobacter capsulatus SB 1003] Length = 344 Score = 234 bits (598), Expect = 1e-59, Method: Composition-based stats. Identities = 89/338 (26%), Positives = 148/338 (43%), Gaps = 17/338 (5%) Query: 24 YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAH 83 Y R R LP H F+ A+ +A T TL I + S Sbjct: 4 YHRASGIRLPDLPETH-PDFVAAWAAAEASLTGPAALARKAPVAAGTLAAAIRAEKTSRP 62 Query: 84 WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVL 143 + L+ + FD + G + + ++HI + ++ K + +A + L + R + Sbjct: 63 FAELSSLYQSILRKDFDAMEAAYGTAPLKGLRSRHIEADLD--KLSADAANKRLKAWRRV 120 Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSG 203 A R+ + +P + V R K KTEG WT+++++QF++ W G+ R FE + ++G Sbjct: 121 MGGARRRGEIESDPSIEVRRIKVKTEGFPAWTQDEVEQFRARWPIGTVQRACFELVCWTG 180 Query: 204 LRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF------- 255 R +D+ R G ++ + S + KT V + A +ET Sbjct: 181 ARTNDAVRLGPCNIDHGGVLSYRQSKTANPAMVPWSNPLPGYAAAWAAERETVKAALACL 240 Query: 256 -----FINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMAT 310 F+ + + + A AGV KSAHG+RK+ T A+AG +AH +MA Sbjct: 241 SGGFTFLEANGRVRSVKGLGNVISEAARGAGVEKSAHGLRKYRLTAIAEAGGSAHAIMAW 300 Query: 311 YGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348 G +T+ +AE YT+ ADR RL + + +VV P Sbjct: 301 GGHQTLVEAEHYTRAADRRRL-VMGVEQGGNVVSPRSP 337 >gi|119386556|ref|YP_917611.1| phage integrase family protein [Paracoccus denitrificans PD1222] gi|119377151|gb|ABL71915.1| phage integrase family protein [Paracoccus denitrificans PD1222] Length = 357 Score = 234 bits (597), Expect = 1e-59, Method: Composition-based stats. Identities = 62/356 (17%), Positives = 137/356 (38%), Gaps = 28/356 (7%) Query: 9 PFVTKERTRHGKIIYYFRKGHGRRIRLP---YPHESTFIPAYMSALTGSTPKREYINSPR 65 P + E R+G Y R + +R+ P + F Y +A G +R + + Sbjct: 6 PGLLIESHRNGSPRYRVRVEGRKHVRIHLPVGPEDKDFANYYYAARAG---ERWLPSERK 62 Query: 66 KKPTTLKWLISEYR----KSAHWGSLAVNSRISFESYFDQIIR-------KSGDFDYRKI 114 ++ WL +EY + G ++ + S ++ + GDFD Sbjct: 63 AVKGSIDWLCAEYLSFVARMVEAGQMSPATLKQRRSVLRRLCDYSGGGSVRYGDFDMDAP 122 Query: 115 TTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT-EGIRP 173 ++ P +A + ++R ++ WA +EY+ NP ++ G P Sbjct: 123 AAA-FIEIRDAWATHPGAADNLIKTVRAVYTWAQEREYIRHNPAAGIKAINVNPAGGAVP 181 Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH--LQNN--IFSIKTQKT 229 W+ ++++F+ G+ L ++ R D+ G +++ + +K Sbjct: 182 WSVAELKKFREHHPRGTTAHLWLTLHAFTACRIGDAIWLGRAQEVMRDGQLWLGWQPRKR 241 Query: 230 GTI-ITVELPDGFMKLLAMTPIGKETFFINNDKQKM-NATQFSIWFKAKATKAGV-NKSA 286 G+ +++ + + + +N + + + + + AG+ ++S+ Sbjct: 242 GSAFVSIPMMPPLIAATRAA--DGPAYLLNEKGKPFASVEALRVRVQRWCSAAGIPDRSS 299 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342 HG+RK + A G T +++MA +E YTK R L + ++++ Sbjct: 300 HGIRKAVGELMAQNGCTQYQVMAVMAHTQAKTSEIYTKRVKRQILAADGVKALAAL 355 >gi|168495175|ref|YP_001686913.1| integrase [Azospirillum phage Cd] gi|168148934|emb|CAO99398.1| integrase [Azospirillum phage Cd] Length = 295 Score = 233 bits (595), Expect = 2e-59, Method: Composition-based stats. Identities = 77/287 (26%), Positives = 138/287 (48%), Gaps = 11/287 (3%) Query: 61 INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120 + + TL W+I YR S + LA ++ +E+ FD++ ++ + +HI Sbjct: 1 MKRGKYGHGTLGWVIGRYRLSPEYQRLAPATKKIYEAAFDRLHD-YAQEEFSGLRRRHIM 59 Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 + H+P++A Q +T++ + ++A+ +E + +P V R K T R WT ++ Sbjct: 60 RVRDDLAHSPATANQVITAIGAVCRFALDREMIETDPSHRVPRLK--TGEWRRWTDAELD 117 Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240 +F E R F L++G R +D CRA +Q+ ++ QKTG + + L Sbjct: 118 KFYQSAYEAL--RRVFVMALFTGQRRADLCRATWGDIQDGGINVVQQKTGAHLWIPLHPT 175 Query: 241 FMKLLA-----MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSA 294 + LA TP+ T + D+ S F+ +A K G+N + HG+RK +A Sbjct: 176 LERHLAIWKSDATPLPSVTILTSTDRTPWPPQVLSCAFRNEADKLGLNGCNLHGLRKTAA 235 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341 A+AG +A ++MA G T+++ E YT+ A++ RL + Sbjct: 236 AKLAEAGCSARQIMAITGHSTMNEVERYTRQAEQRRLASDAIGAFDA 282 >gi|265984520|ref|ZP_06097255.1| integrase/recombinase [Brucella sp. 83/13] gi|306839293|ref|ZP_07472110.1| integrase/recombinase protein [Brucella sp. NF 2653] gi|264663112|gb|EEZ33373.1| integrase/recombinase [Brucella sp. 83/13] gi|306405840|gb|EFM62102.1| integrase/recombinase protein [Brucella sp. NF 2653] Length = 333 Score = 232 bits (592), Expect = 6e-59, Method: Composition-based stats. Identities = 60/294 (20%), Positives = 123/294 (41%), Gaps = 17/294 (5%) Query: 4 SLRLP-PFVTKERTRHGKIIYYFRKGHGRRIRL-------PYPHESTFIPAYMSALTGST 55 S R+P + +++ RHG +Y R + R+ F Y L G Sbjct: 12 SQRVPFKYCSRDIDRHGNERFYLRLPGMPKYRMTSAYLDEAGSITQAFTEEYHRVLAGGR 71 Query: 56 PKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT 115 ++ + R +P +++WL+ Y +S + S + ++ +S ++ G+ ++KI Sbjct: 72 GEK-AVPISRLEPGSVRWLVETYYRSKAFQSQSPATQKDKKSVLNRYCLNVGELPFKKIR 130 Query: 116 TKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175 I + R TP +A + + ++ LF WA+ E P V + ++ G W+ Sbjct: 131 KSDIEASQMKRSGTPGAADKLVKYLKALFNWAISAELATFTPANGVTKI-HQSPGFHTWS 189 Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG----T 231 + ++ ++++ + GS RLA E +L G+R SD + G ++L + +K Sbjct: 190 EAELARYRAAYPLGSMARLAMELMLNLGVRRSDLVKLGWRNLVGDRIEFMPEKGSGKYAQ 249 Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAK---ATKAGV 282 +++ + D + L + TF I + + F + AG+ Sbjct: 250 SLSLPVTDELREALDAITHDQPTFLITEYGKAFSGNGFGNKMRQWVQRCRFAGM 303 >gi|83951418|ref|ZP_00960150.1| Integrase/recombinase [Roseovarius nubinhibens ISM] gi|83836424|gb|EAP75721.1| Integrase/recombinase [Roseovarius nubinhibens ISM] Length = 352 Score = 231 bits (590), Expect = 9e-59, Method: Composition-based stats. Identities = 78/336 (23%), Positives = 136/336 (40%), Gaps = 24/336 (7%) Query: 19 GKIIYYFRKGHGRRIRLPYP--HESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76 G YY RK ++ L F+ Y +A+ R +L +I Sbjct: 9 GTTYYYLRKRGQSKVPLGKGPIDSPEFLSRYSAAMGTKK------TPSRAAKDSLGHIIE 62 Query: 77 EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQF 136 ++ SA++ + + R + + D + G + +I HIRS + +P +A Sbjct: 63 LFKASANYRAYSEAYRGTLGRHSDALKECYGSAPFSEIKPHHIRSDLSQL--SPHAANDR 120 Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKR-KTEGIRPWTKEDMQQFKSFWSEGSQPRLA 195 L R+L ++A + ++R K KT+G RPW+ D+ F++ W GS RL Sbjct: 121 LKIWRLLCQYAYDHNFADHVASDGIKRGKLPKTDGHRPWSTADVNAFRAKWEIGSVQRLC 180 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGK-- 252 FE L ++ R D+ + + + + KTG V + Sbjct: 181 FELLFWTAARTIDAVTLTPSMIGADGVLTFTQAKTGGKAYVPWNCALPGWAKHFETDRTL 240 Query: 253 ---------ETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGA 302 TF ++ + + S A A +A + SAHG+RK T A+AG Sbjct: 241 LKACITSTTFTFLETSNGRARSRKGLSNIISAGAAEAKLTGLSAHGLRKSRLTAIAEAGG 300 Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRR 338 +A +M+ G K++ +AE Y A+R + I ++ Sbjct: 301 SASAIMSWGGHKSLKEAEDYVSTANRKSVLIGTEQK 336 >gi|153009491|ref|YP_001370706.1| phage integrase family protein [Ochrobactrum anthropi ATCC 49188] gi|151561379|gb|ABS14877.1| phage integrase family protein [Ochrobactrum anthropi ATCC 49188] Length = 297 Score = 231 bits (590), Expect = 1e-58, Method: Composition-based stats. Identities = 66/290 (22%), Positives = 129/290 (44%), Gaps = 13/290 (4%) Query: 62 NSPRKKPTTLKWLISEYRK----SAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK 117 S KP ++ WL+S Y + S G+ + + + +++I I + Sbjct: 4 ASEVAKPKSISWLVSSYLEYLEASVVAGTSSGKTLKKKRNLLNRLIEN--PDRVMLIPQE 61 Query: 118 HIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177 + + TP+ A F+ ++ V++ WA ++ V+ NP +++ K +G PW + Sbjct: 62 KLIEMQDKMGSTPAQADAFIEAVGVMYDWAKKRNLVSSNPAKGIDKVYIKGDGAIPWKAD 121 Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH--LQNNIFSIKTQ---KTGTI 232 D+++F + GS+ +A LL++G R D G ++ + I +++ Q K + Sbjct: 122 DVKKFFAKHKPGSKAHVAMSVLLWTGCRIEDLAVLGRKNECVIEGIEAVRWQPSKKGSSE 181 Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKM-NATQFSIWFKAKATKAGVN-KSAHGVR 290 ++V L + T+ + + + S FK A + SAHGVR Sbjct: 182 VSVPLLPALKTATCTPTVQGGTYVLGRGGKPFASGDSMSAMFKRWCKDADLPLLSAHGVR 241 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340 K A + A+ G + +E+MA G +E YT+ +R +L + R++ Sbjct: 242 KGLAELLAEQGCSQYEIMAILGHSEAKTSEVYTRRVERWKLALGAVERVN 291 >gi|149204078|ref|ZP_01881046.1| putative integrase [Roseovarius sp. TM1035] gi|149142520|gb|EDM30565.1| putative integrase [Roseovarius sp. TM1035] Length = 346 Score = 231 bits (588), Expect = 2e-58, Method: Composition-based stats. Identities = 67/329 (20%), Positives = 121/329 (36%), Gaps = 20/329 (6%) Query: 22 IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKS 81 +YY+ G R+ P + F+ AY +A+ ++E TL+ +++ Y++S Sbjct: 22 VYYYAWKGGPRLP-GKPGDPEFVDAYHTAVQTRRSQQE---------GTLQAILNAYQES 71 Query: 82 AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS----GVESRKHT-PSSAIQF 136 + LA ++ + + +I + DF + + R + T A Sbjct: 72 QRFLDLAPRTQRDYARHIRKIEGEYHDFPLSALLERAARGEFLSWRDRMAKTSRRQADYT 131 Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF 196 + + ++ WA + V NPC + R WT ED F S LAF Sbjct: 132 YSVLALIIAWAYDRGLVPSNPCERPGKVYRSERIDSVWTSEDEAAFLKVAP--SHIGLAF 189 Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFF 256 L++G R D R ++ +KTG + + + +L T T Sbjct: 190 MLALWTGQRQGDLLRLSWSAYDGERIRLRQRKTGARVEIPVGKPLRAMLDQTSRSAVTIL 249 Query: 257 INNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKT 315 + K + F + +AGV + + H +R + T A AG + E+ A G Sbjct: 250 ATSRKTSWTESGFRASWGKACKRAGVEDVTFHDLRGTAVTRLAVAGCSVPEIAAITGHSL 309 Query: 316 VDQAETY-TKGADR-IRLGIKNSRRISSV 342 R +LGI +++ Sbjct: 310 KQVTAILDAHYLSRDSKLGISAIQKLEEH 338 >gi|119385371|ref|YP_916427.1| phage integrase family protein [Paracoccus denitrificans PD1222] gi|119375138|gb|ABL70731.1| phage integrase family protein [Paracoccus denitrificans PD1222] Length = 335 Score = 229 bits (585), Expect = 4e-58, Method: Composition-based stats. Identities = 71/329 (21%), Positives = 141/329 (42%), Gaps = 12/329 (3%) Query: 9 PFVTKERTRHGKIIYYFRKGHGR---RIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65 P++ + + R G+ + +R+G + +P + AY + + +P+ Sbjct: 5 PYL-RSKLRRGRWFHTYRRGDKEISLGVHGLHPTDPRVFAAYCAEHARWEHRPPETATPK 63 Query: 66 KKPTTLKWLISEYRKSAHWGSL---AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG 122 T W + Y S +W L + +R + ++ + +R G+ IT + I + Sbjct: 64 S--GTFAWAVDLY-TSGNWKWLNEYSEGTRKARQAILKRYVRAQGNRPLSAITPRDIENA 120 Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 + ++ A+ ++R +F+ R ++ NP + +E + + + +D+ F Sbjct: 121 LYAKGG--HGAVNDFKALRPVFEHVKRLGFITRNPMIGIELDRPMSNELPTADADDIAAF 178 Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242 W G+ RL F+ LY+G +D G +++ N+ KTG V + Sbjct: 179 IKRWEVGTVERLIFDLGLYTGAARADLAVIGRHNIKGNVLIFNRVKTGVPSYVPITPELR 238 Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGA 302 ++A TP TF ++ ++ F+ A AG+ HG+RK A+ G Sbjct: 239 AVIARTPDISPTFILSKWRKPYQPQSLGQRFEEAAVAAGMKARLHGLRKAFCVYWAENGK 298 Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRL 331 T H++ A G T+ + E YT+ ADR ++ Sbjct: 299 TVHQIAAMAGHLTLKEVERYTRAADREQI 327 >gi|260432502|ref|ZP_05786473.1| phage integrase family protein [Silicibacter lacuscaerulensis ITI-1157] gi|260416330|gb|EEX09589.1| phage integrase family protein [Silicibacter lacuscaerulensis ITI-1157] Length = 353 Score = 229 bits (584), Expect = 4e-58, Method: Composition-based stats. Identities = 84/336 (25%), Positives = 146/336 (43%), Gaps = 23/336 (6%) Query: 15 RTRHGKIIYYFRKGHGRRIRLPYPHE-STFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73 R + +Y + + G R+ P + F+ AY+ A + + K+ + + T+ Sbjct: 6 RVKQDGKVYRYHRATGTRLPDGIPEDHPDFLAAYLKAESQTGQKKPRRGASPRA-GTVAH 64 Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133 ++ KS + L+ R ++ D I+ K G +I HI + ++ ++A Sbjct: 65 AWWQFTKSDAFLDLSEGYRRRMMAHGDDIVAKGGKVPIDQIRAYHIENDIQDMDR--NAA 122 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE-GIRPWTKEDMQQFKSFWSEGSQP 192 L + R WA + V N V+ PK K + W+ + + F++ W + Sbjct: 123 RTRLKAWRKFLDWA-QPRLVERNWAKLVDMPKAKKGTPHKRWSADHVAAFRNRWPVDTPQ 181 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVE----LPDG------- 240 RLAFE +L++G+R D+ R G + + + K +KTG + LP Sbjct: 182 RLAFELMLFTGMRICDAVRCGPGWIDRDGWMTFKQKKTGGDALIAFNRDLPPFADAEARA 241 Query: 241 -FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN----KSAHGVRKFSAT 295 + L TF + S WF A KAG+ ++AHG+R Sbjct: 242 YLSECLNARTERHMTFLATIHGTSRSEKAASNWFSDAARKAGLKGDQRRTAHGLRDTCCA 301 Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 A+ GATAH+LM G +++++AE YTK AD+ R+ Sbjct: 302 RLAEGGATAHQLMTWSGHESLEEAERYTKDADKKRM 337 >gi|126734338|ref|ZP_01750085.1| putative integrase [Roseobacter sp. CCS2] gi|126717204|gb|EBA14068.1| putative integrase [Roseobacter sp. CCS2] Length = 345 Score = 229 bits (583), Expect = 6e-58, Method: Composition-based stats. Identities = 72/315 (22%), Positives = 122/315 (38%), Gaps = 20/315 (6%) Query: 23 YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSA 82 YY+ G RI+ Y F+ YM+ + SP+ K ++ WLI++Y +S Sbjct: 23 YYYAHRGGPRIQAKY-GSPEFVTQYMAL--------KQSASPKVKRNSIDWLITQYLESY 73 Query: 83 HWGSLAVNSRISFESYFDQIIRKSGDFDY----RKITTKHIRSGVESRKHTPSSAIQFLT 138 + +L+ S+ ++ Y I +K G R R S + +A L Sbjct: 74 DFKALSDASKREYKRYLTLISQKFGKAPIDIATRNDAIAAYRQWHRSMQDKQRTANYALA 133 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR---PWTKEDMQQFKSFWSEGSQPRLA 195 ++ L WAV NP ++ KRK + R WTK+ + F + G + Sbjct: 134 VLKKLMAWAVDSGNTTTNPTAQIKPIKRKGKSTRRDIIWTKDQINHFNTV--AGCHVKNP 191 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF 255 F L + R D + I+ KTG + +++P+ +L E Sbjct: 192 FNAALLTSQRKKDIIEMTWDAYDGDTIKIRQSKTGKDVWIKVPEELKCILDGLDRTHERV 251 Query: 256 FINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWK 314 F+N+ Q + F+A A VN + H R + T++ GA+ E+ G Sbjct: 252 FLNSLGQPWTLDGYDSSFRAAKIAAKVNGVTFHDTRGTAVTLAYIGGASFREISLMSGHS 311 Query: 315 TVDQAETY-TKGADR 328 + E T +R Sbjct: 312 EREVEEIINTHYLNR 326 >gi|119383712|ref|YP_914768.1| phage integrase family protein [Paracoccus denitrificans PD1222] gi|119373479|gb|ABL69072.1| phage integrase family protein [Paracoccus denitrificans PD1222] Length = 359 Score = 225 bits (573), Expect = 8e-57, Method: Composition-based stats. Identities = 83/351 (23%), Positives = 140/351 (39%), Gaps = 19/351 (5%) Query: 12 TKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71 + + R K+I Y R R F+ A+ G + +L Sbjct: 6 IRRQKRGDKVIRYHRATGIRLPDDIPETHPDFVSAWARCEAGQG--QPDAPKAPAPTGSL 63 Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131 +R S + + R + I + G + I KHI + + T Sbjct: 64 AAACIAFRGSPSFKEQSPVYRDILTRNIEAIRGEYGHVAIKAIKAKHISADLAKLAGTR- 122 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191 + L + R + A R + +P L+V+ PK K +G + WT+ D++ F+ W G+ Sbjct: 123 -PLSRLKTWRKVMDHARRTGLIEEDPSLTVKAPKVKLKGHQVWTEGDIEVFRGKWKIGTV 181 Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHL-QNNIFSIKTQKTGTIITVELPDGFMKLLAMTP- 249 R FE LL++ R D+ R G QH+ ++ + S + KTG + V A Sbjct: 182 QRACFELLLWTAARTVDAVRIGPQHVGKDGVLSFRQSKTGGMAYVPWTATLPNWGAGWAD 241 Query: 250 ------------IGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATI 296 G TF + + S A A +A + ++AHG+RK T Sbjct: 242 ERREMMEALRCLAGGLTFLQARGARPRSEKGLSNLISAAAREAKLEGRTAHGLRKARLTR 301 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347 A+AG +AH + + G KT+ +A YT+ AD RL + ++V ++ Sbjct: 302 IAEAGGSAHAIKSWGGHKTLAEAAHYTESADAKRLVTGTEQEQNAVSPAER 352 >gi|119386436|ref|YP_917491.1| phage integrase family protein [Paracoccus denitrificans PD1222] gi|119377031|gb|ABL71795.1| phage integrase family protein [Paracoccus denitrificans PD1222] Length = 342 Score = 224 bits (570), Expect = 2e-56, Method: Composition-based stats. Identities = 84/345 (24%), Positives = 132/345 (38%), Gaps = 23/345 (6%) Query: 6 RLPPFVTKERTRHGKIIYYFR-------KGHGRRIRLPY-PHESTFIPAYMSALTGSTPK 57 + P+VT +RT GK +Y+R + R I LP P F AY S +G++ + Sbjct: 4 QRKPYVTLKRT-GGKARWYYRLTWFEGARRRERFIPLPDDPDSEEFDRAYWSIRSGTSEE 62 Query: 58 REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK 117 + R K T + L+ YR SA + LA ++ S+ + I+ + D IT + Sbjct: 63 VQ-----RPKKETWRQLVMAYRGSAGFRKLAPRTQKSYNDTIEWILSANADKAVSTITKQ 117 Query: 118 HIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTK 176 +R TP A + + +L +A Q E+ NP + K PW + Sbjct: 118 KLRDLHVKYGETPRKADMLVQMVSILVNFARTQLEWAVTNPAEGLT-LYGKQREYEPWPE 176 Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236 ++ R A E +L +G R S + ++ +K + Sbjct: 177 WMVKAL---PDAPLVVRSAAELILGTGQRPSAAIVMRRDQFHGEWMTVTDEKGDESYEIF 233 Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG---VNKSAHGVRKFS 293 P LA P+ + N Q M F+A T G S HG+RK S Sbjct: 234 CPQELRSYLASLPVAGQHVIPRNLTQPMRYDSVEKAFRAWRTDLGDRARPFSLHGLRKLS 293 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRR 338 A+AG T E+ A ++ Y K A+R +L R Sbjct: 294 IIRLAEAGCTDAEIQAITN-QSAQTVAYYRKRANRKKLSRAAMER 337 >gi|221641161|ref|YP_002527423.1| Integrase/recombinase [Rhodobacter sphaeroides KD131] gi|221161942|gb|ACM02922.1| Integrase/recombinase [Rhodobacter sphaeroides KD131] Length = 353 Score = 222 bits (566), Expect = 6e-56, Method: Composition-based stats. Identities = 83/337 (24%), Positives = 147/337 (43%), Gaps = 23/337 (6%) Query: 9 PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68 P V + R R +++ Y R R LP H P +++A + + + P Sbjct: 4 PRVQRIR-RGDRVLCYHRPTGTRLPDLPETH-----PEFVAAWAKAEATKPDLAPPVADK 57 Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH 128 ++ ++ R S W A + R+S + ++I + G R + KH+ ++ K Sbjct: 58 -SVAKVVRALRASKRWKGFAASYRLSLRFHLERIETEHGTLPLRGLRQKHVE--MDLGKL 114 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 P+ L R++F A + +P + + K+ G WT ++ F++ W+ Sbjct: 115 DPNPRNVSLKCWRLIFAQAKADGIIESDPSHEIGKLVTKSPGHVAWTTAEVAAFRARWAV 174 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKL--- 244 G++ R AFE L ++G R SD+CR H+ + + + + QKTG + V Sbjct: 175 GTRQRAAFELLAWTGCRVSDACRMTRTHIGSDGLMTFRQQKTGGLAYVPWTCALPSWALR 234 Query: 245 ---------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSA 294 A+ T + + + S + A A +AG+ ++ HG+RKF Sbjct: 235 WEEERETVRAAVMATAGFTLLETSYGKARSVKGLSNFITAAAAEAGIEGRTPHGLRKFRL 294 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 T A+AG AH +MA G ++ +AE YT+ A R L Sbjct: 295 TAIAEAGGPAHAIMAWGGHASLSEAEAYTRAASRRGL 331 >gi|114766935|ref|ZP_01445855.1| Integrase [Pelagibaca bermudensis HTCC2601] gi|114540842|gb|EAU43904.1| Integrase [Roseovarius sp. HTCC2601] Length = 335 Score = 220 bits (561), Expect = 2e-55, Method: Composition-based stats. Identities = 65/346 (18%), Positives = 123/346 (35%), Gaps = 16/346 (4%) Query: 4 SLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS 63 LP +V + R +Y+ R G +RI P F Y + G Sbjct: 2 KRNLPAYVYAKGKR--GYLYFIRSGVCQRIH-SEPGTPEFAADYAILMRGRV-------- 50 Query: 64 PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123 + LI + +S W + A N+R +E + + +G+ D K+ T H+ Sbjct: 51 -VAPKRNIGKLIELFMRSPKWANYAHNTRRGYERHLTYLRDTAGNIDPAKLRTVHVYEMR 109 Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 ++ P+ A + + ++ L + ++ ++ NP VER K +PW + + F+ Sbjct: 110 DALADKPTDANRKIDTLVALLNYGIQIGWIDRNPAHGVERLKATGRKRKPWPVDLIDAFR 169 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243 + + L FE LL +G R +D + + F + KT + + L D Sbjct: 170 AEADGRT--LLIFEMLLGTGQRINDVLALRWSDMDGDGFQLTQGKTKAELYIPLTDRLRA 227 Query: 244 LLAMTPIGKETFFINNDKQKMNAT-QFSIWFKAKATKAGVNKSAHGVRKFSATISAD-AG 301 +LA + D K++ + H +R +A+ A G Sbjct: 228 VLASQRRRGMFIICHEDGTKISYQLAHKDVMTVRKKIGADEYDIHALRYAAASEIAAIPG 287 Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347 T + A G Y A + + + + ++ Sbjct: 288 MTRDHIQAITGHADAAMIRRYAGAAVQKIRATEAQKARADRTNTKR 333 >gi|77462207|ref|YP_351711.1| integrase/recombinase [Rhodobacter sphaeroides 2.4.1] gi|77386625|gb|ABA77810.1| Integrase/recombinase [Rhodobacter sphaeroides 2.4.1] Length = 348 Score = 220 bits (561), Expect = 2e-55, Method: Composition-based stats. Identities = 80/329 (24%), Positives = 142/329 (43%), Gaps = 22/329 (6%) Query: 17 RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76 R +++ Y R R LP H P +++A + + + P ++ ++ Sbjct: 6 RGDRVLCYHRPTGTRLPDLPETH-----PDFIAAWAKAEASKPDLAPPVADK-SVAKVVR 59 Query: 77 EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQF 136 R S W A + R++ + ++I + G R + KH+ ++ K P+ Sbjct: 60 ALRASKRWKGFAASYRLNLRFHLERIETEHGALPLRGLRQKHVE--MDLGKLDPNPRNVS 117 Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF 196 L R++F A + +P + + K+ G WT ++ F++ W+ G++ R AF Sbjct: 118 LKCWRLIFAQAKADGIIESDPSHEIGKIVTKSPGHVAWTTAEVAAFRARWAVGTRQRAAF 177 Query: 197 EFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKL----------- 244 E L ++G R SD+CR HL + + + + QKTG V Sbjct: 178 ELLAWTGCRVSDACRMTRTHLGSDGLMTFRQQKTGGPAYVPWTCALPSWALRWEEERETV 237 Query: 245 -LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGA 302 A+ T + + + S + A A +AG+ ++ HG+RKF T A+AG Sbjct: 238 RAAVMATAGFTLLETSYGKARSVKGLSNFITAAAAEAGIEGRTPHGLRKFRLTAIAEAGG 297 Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRL 331 AH +MA G ++ +AE YT+ A R L Sbjct: 298 PAHAIMAWGGHASLSEAEAYTRAASRRGL 326 >gi|126464049|ref|YP_001045162.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17029] gi|126105860|gb|ABN78390.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17029] Length = 360 Score = 219 bits (557), Expect = 6e-55, Method: Composition-based stats. Identities = 68/351 (19%), Positives = 121/351 (34%), Gaps = 23/351 (6%) Query: 10 FVTKERTRHGKI-IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68 K R GK+ ++Y+ G +I P F P Sbjct: 5 HKVKRRLVSGKVAVHYYAWRGGPKIEA-EPDSPEF-------RAAYDAAHAARQKPVHHD 56 Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH 128 TL+ LI+ Y+++ + LA ++ + + QI + GD + + +R + Sbjct: 57 GTLQALITAYQQTPAFTVLAPTTKAGYIRHIRQIEAEFGDMPLKALADPRVRGEFLDWRD 116 Query: 129 T-----PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 SA + + ++ WA + + NPC R + WT+ + F Sbjct: 117 RLGQKSKRSADYAFSVLALILAWAYDRRKIPSNPCEKPGRLYAGSRADDIWTESQIAAFL 176 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243 + RL F +++G R +D + + +K KTG + + + + Sbjct: 177 DKAPK--PVRLPFLLAIWTGQRQADILKLTWSAYDGQVIRLKQSKTGRHMVIPVARQLRE 234 Query: 244 LLAMTPIGK--ETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADA 300 L + T + Q + F F AG+ + H +R + T A A Sbjct: 235 ALDAAKARRKTLTICETSRGQPWTSDGFKTSFGKAQAAAGIEGVTFHDLRGTAVTFLALA 294 Query: 301 GATAHELMATYGWKTVDQAETYTK---GADRIRLGIKNSRRISSVVDSDDP 348 G + E+ A G D +K G DR RLG ++ P Sbjct: 295 GCSVPEIAALTGHSLKDAEAILSKHYLGRDR-RLGESAVAKLERHGLGTKP 344 >gi|254471175|ref|ZP_05084577.1| site-specific recombinase, phage integrase family [Pseudovibrio sp. JE062] gi|211959321|gb|EEA94519.1| site-specific recombinase, phage integrase family [Pseudovibrio sp. JE062] Length = 426 Score = 217 bits (554), Expect = 2e-54, Method: Composition-based stats. Identities = 79/335 (23%), Positives = 125/335 (37%), Gaps = 21/335 (6%) Query: 16 TRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75 +HGK+ Y RK P S A+++ T ++ R P TL LI Sbjct: 14 DQHGKLRCYHRKTGEPINLEKAPIGS---AAFLAECERLTNLMSVADTSR--PGTLGNLI 68 Query: 76 SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPSSA 133 +YR S+ + LA ++ ++ FD + + + T+ I + + A Sbjct: 69 DKYRASSAFLELADRTKSDYQKVFDYL-APIHNTPLTRFTSPFIVKLRDKAEEQRKRRFA 127 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVE---RPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 + VLF W + +V NP L V+ +PK RPWT ++ Sbjct: 128 NYVKQVLSVLFSWGKERGFVKENPALGVKSIRKPKNAPIANRPWTDDERGIVLKHAPPQM 187 Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPI 250 P A ++Y+GL D+ Q QN S + KTG + + L P Sbjct: 188 VP--ALTLMMYTGLGPQDALTLSKQQYQNGFISTRRAKTGAPVFWPVIAPLKAALDDAPD 245 Query: 251 -GKETFFINNDKQKMNATQFSIWFKAKATKA------GVNKSAHGVRKFSATISADAGAT 303 G T N+ Q + F ++ + + +G+R ATI + G Sbjct: 246 HGAPTLCTNSRGQPWTVSGFRASWRKLRIQLEDKNLIKPGLTLYGLRHTVATILREIGLN 305 Query: 304 AHELMATYGWKTVDQAETYTKGAD-RIRLGIKNSR 337 +L A G +T A Y KGAD R + R Sbjct: 306 DRDLAAALGHETEAMARLYAKGADLRKSMSDIAVR 340 >gi|146279095|ref|YP_001169254.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17025] gi|145557336|gb|ABP71949.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17025] Length = 361 Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats. Identities = 66/344 (19%), Positives = 132/344 (38%), Gaps = 26/344 (7%) Query: 9 PFVTKERTRHGKIIYYFRKGHGRRIRLP----YPHESTFIPAYMSALTGSTPKREYINSP 64 P + E+ Y R GR+ ++ Y +A G + Sbjct: 6 PGLWAEKLPSASTRYRVR-AEGRKTKVTVIPVATDHPDVWDHYRAARAGEKWTGPATKT- 63 Query: 65 RKKPTTLKWLISEYRKS----AHWGSLAVNSRISFESYFDQIIR-------KSGDFDYRK 113 +++WL+ +Y G + + +S ++ G++D + Sbjct: 64 TAVAHSIEWLVEKYLAHLARVVEAGQASPLTLRQRKSQLRRMCAMPTDDGGTYGEYDMQA 123 Query: 114 ITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIR 172 + I + + +H P+ A + S+ +++WA+ + E NP + + R G Sbjct: 124 PRSA-IIAARDQWRHKPAEADNLIKSISAMYRWAIDEAEIATGNPAAGIGKLNRGGGGAA 182 Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQK 228 P T ED+++F++ G+ L +++ R D+ + G + + K Sbjct: 183 PRTAEDLKKFRAKHPLGTTAHLWLTLQMFTACRIDDARKLGRGNEVERAGALWIEFQPGK 242 Query: 229 TGT-IITVELPDGFMKLLAMTPIGKETFFINNDKQKM-NATQFSIWFKAKATKAGV-NKS 285 G+ ++V L +K + T+ + + + A + AG+ KS Sbjct: 243 KGSAPVSVPLLPQLLKATRAQKVQGATYLLTDYGRPFSTAESLRNRVRKWCAAAGIEGKS 302 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 +HG+RK + A+AG T H++MA +E YTKG +R Sbjct: 303 SHGIRKAMGELLAEAGCTQHQIMAIMAHTKAKTSEIYTKGVERR 346 >gi|260427090|ref|ZP_05781069.1| phage integrase family protein [Citreicella sp. SE45] gi|260421582|gb|EEX14833.1| phage integrase family protein [Citreicella sp. SE45] Length = 357 Score = 217 bits (552), Expect = 2e-54, Method: Composition-based stats. Identities = 81/362 (22%), Positives = 148/362 (40%), Gaps = 34/362 (9%) Query: 5 LRLPPFVTKERTRHGKIIYYFRKGH--GRRIRLP-YPHESTFIPAYMSALTGSTPKREYI 61 ++ P +V ++ R G+ ++ R RR+ +P P + F Y +A G +P E + Sbjct: 3 VQFPGYVPEK--RGGRTLHRVRVKGNAARRVTIPVGPEDPQFSALYHAARRGESP--EVV 58 Query: 62 NSPRKKPTTLKWLISEYR-------KSAHWGSLAVNSRISFESYFDQIIRKSG------- 107 +L L+ Y + L R S + SG Sbjct: 59 KQSLAPAMSLDALVDAYLELLESDVRHGQASRLTHRQRKSLLKRACDMPDDSGTGRMGAL 118 Query: 108 DFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167 D + +HI + +R + A + ++R + R +++ NPC+ ++R R Sbjct: 119 HCDLPPVALRHIIAQWGART---AQADNTIKALRAAYD---RMDWLDANPCVGIKRVHRS 172 Query: 168 TEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH-LQNN---IFS 223 G PW+ D+Q F +G+ R+ L++G R SD + G + ++ + Sbjct: 173 KGGTTPWSTGDVQAFMKAHPQGTSARVWLMLALFTGARLSDLAKLGRANEVRRDGMTWIE 232 Query: 224 IKTQKTGTIIT-VELPDGFMKLLAMTPIGKETFFINNDKQKM-NATQFSIWFKAKATKAG 281 + K G+ T + + + + T + T+ +N Q N + + AG Sbjct: 233 WQPSKRGSSHTSMPMAPQLAEAVRATGVIGRTYILNQQGQPFANGPVLAERVRRWTADAG 292 Query: 282 VN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340 + +S+HG+RK I ADAGAT H++M+ + + YTK A R RL + I Sbjct: 293 LERRSSHGLRKALGGILADAGATEHQIMSVLSHASPTTSAIYTKSAQRARLAGEAMASIR 352 Query: 341 SV 342 + Sbjct: 353 GL 354 >gi|220922881|ref|YP_002498183.1| integrase family protein [Methylobacterium nodulans ORS 2060] gi|219947488|gb|ACL57880.1| integrase family protein [Methylobacterium nodulans ORS 2060] Length = 351 Score = 216 bits (551), Expect = 3e-54, Method: Composition-based stats. Identities = 79/343 (23%), Positives = 140/343 (40%), Gaps = 25/343 (7%) Query: 10 FVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69 V + R RHGK Y R + P+ + A ++ L G K+E + Sbjct: 9 GVKRYRDRHGKWRNYHRATGKP---IKAPYGTAEFAAEVAELNGLVSKKEPPRN-----G 60 Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RK 127 TL+ ++ EY+ + + LA+ +R +E YF+ I + D + I + + + K Sbjct: 61 TLRGVMDEYKTTPAFADLAMATRAGYERYFE-IAKPLHDVPIQSIDSAGLSVIRDKVAMK 119 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR---KTEGIRPWTKEDMQQFKS 184 +A L+ + VLF +A+ ++YV NP V+R KR K + RPW+ E+ + + Sbjct: 120 RGWRTANYMLSVLSVLFGFAIERKYVTQNPAFVVKRAKRDKTKPKANRPWSLEERKAVLA 179 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244 S ++ +++G+R D+ ++ + T KTG I + + ++ Sbjct: 180 EAP--SHLKVPLALAMFTGVRKRDALTLRKDAIRGGAIA--TSKTGEEIFIRIHPELAEI 235 Query: 245 LA-MTPIGKETFFINNDKQKMNATQF---SIWFKAKATKAG---VNKSAHGVRKFSATIS 297 LA P T + T F FK K G + HG+R Sbjct: 236 LAGAPPHAAPTIAATSRGTPWTETGFNSVWDKFKDKLEAEGRVRPGLTIHGLRHTLGGHL 295 Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340 ADAG + G KT+ A+ Y++ + + R+ Sbjct: 296 ADAGCDLDTIRRVLGQKTLTMAQLYSERVKKEAATKEAMERMD 338 >gi|254476067|ref|ZP_05089453.1| phage integrase family protein [Ruegeria sp. R11] gi|214030310|gb|EEB71145.1| phage integrase family protein [Ruegeria sp. R11] Length = 335 Score = 213 bits (542), Expect = 3e-53, Method: Composition-based stats. Identities = 67/334 (20%), Positives = 112/334 (33%), Gaps = 23/334 (6%) Query: 17 RHGKIIYYFRKGHGRRIRLPY-PHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75 RH YFRK +R+ + F Y +TG T+ LI Sbjct: 11 RHPSGRIYFRKTGMSLVRIHAAEGTADFDREYWDIMTGK---------KWAAKTSFAALI 61 Query: 76 SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQ 135 +YR+S W L +R +E I K G+ D R T + ++ H A Sbjct: 62 LDYRESDRWTGLKPRTRSDYEKVLSYIEEKIGNRDVRAFTRPDAIAAQKANAHRTRFANY 121 Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPK---RKTEGIRPWTKEDMQQFKSFWSEGSQP 192 + + VL + A+ +V NP V+ K K + PW + F+ Q Sbjct: 122 IVQILVVLMEHAIDIGWVKENPAKGVKALKTPEHKKKQHLPWPDWAVDLFRE--KVTGQA 179 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT---- 248 RL FE + + R D +++ KT + + + L + Sbjct: 180 RLIFEIGVGTVQRPGDWIAFCWGDYDGENLALRQNKTDKPLILPCTRQLKEALDLQRAGL 239 Query: 249 ---PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATA 304 PI + +M+ + + + G+ H +R A AG Sbjct: 240 GTIPIAAHPILMTQGGGRMSYRYMAQIMLKERKRLGLEAYDLHALRYRGVMELAWAGCDD 299 Query: 305 HELMATYGWKTVDQAETYTKGADRIRLGIKNSRR 338 E+ + G T + Y A +I + S + Sbjct: 300 DEIASYSGHATKEMIAKYAGEARQIMRARQASEK 333 >gi|307317617|ref|ZP_07597056.1| integrase family protein [Sinorhizobium meliloti AK83] gi|306896775|gb|EFN27522.1| integrase family protein [Sinorhizobium meliloti AK83] Length = 400 Score = 212 bits (541), Expect = 4e-53, Method: Composition-based stats. Identities = 72/370 (19%), Positives = 129/370 (34%), Gaps = 37/370 (10%) Query: 9 PFVTKERTRHGKIIYYFRKGHGRRIRLPY-PHESTFIPAYMSALTGSTPKREYINSPRKK 67 P +T G + +R + +P P + F Y + G K E + P Sbjct: 13 PGITLFVDHRGTTRWRYRSKTIKGKLMPGNPGDEEFEKEYKLLVEGEPKKAEVVELPDAA 72 Query: 68 -PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR---------KSGDFDYRKITTK 117 P T + + W L ++ + + GD + Sbjct: 73 LPQTFRAAWKALTSTQDWADLDPATKSKQSRNAKEFLDLPIVPGKEGTWGDVPVNDMDDD 132 Query: 118 HIRSGVESR------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE-- 169 + K TPS ++ +F +A ++++ +P V+ + + Sbjct: 133 DLEKIKLRLSVDSKGKPTPSKPWHVKVVLKKIFFYARKRKWRQDDPTDLVKWKRGGAKNG 192 Query: 170 ---GIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-----NNI 221 G +PW E QQF++ GS R + L+ G R D R L+ + Sbjct: 193 GYVGWKPWPWELRQQFEARHPIGSAARTCYALALFIGNRRGDVARLRWTDLKLVPFEDEW 252 Query: 222 FSI-------KTQKTGTIITV-ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWF 273 + K Q + + L + L P KE +N + + Sbjct: 253 IYVFDYIQNKKVQNDDDMRQIRPLSRMLSEALEPLPRDKEFVLLNGYGVPFSEKSLTGMM 312 Query: 274 KAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 +AG+ K + HG+RK A+AGA+ + G T+D+ Y KGA ++RL Sbjct: 313 AHWTHQAGMPKGYTLHGLRKSYGGDLAEAGASEMQQKDMLGHTTLDEVVNYAKGASKLRL 372 Query: 332 GIKNSRRISS 341 ++ +RR+ Sbjct: 373 TVEGTRRLEE 382 >gi|163737550|ref|ZP_02144967.1| phage integrase [Phaeobacter gallaeciensis BS107] gi|161389076|gb|EDQ13428.1| phage integrase [Phaeobacter gallaeciensis BS107] Length = 343 Score = 212 bits (539), Expect = 7e-53, Method: Composition-based stats. Identities = 59/349 (16%), Positives = 116/349 (33%), Gaps = 24/349 (6%) Query: 7 LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYP-HESTFIPAYMSALTGSTPKREYINSPR 65 LP +V +R + + R+ G + + F Y L G+ Sbjct: 6 LPKYVYNDR----GYLRFIRRSRGISVMMHEEAGTPEFWDHYNRLLKGNPAPAPVRR--- 58 Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125 + LI Y +S + L +R + Y I + D +I T HI + Sbjct: 59 ----NFEALILSYYESDPYKKLKPRTRSDYRRYISHIREIWAEKDPARIETHHIYELHRA 114 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAI---NPCLSVERPKRKTEGIRPWTKEDMQQF 182 A + M VL A ++ NP + K++++G PW + +F Sbjct: 115 NADHWRQANYLVQVMVVLMNHARLIGFIKKEHGNPAKGIPLFKQQSDGWEPWPDDVRAEF 174 Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242 ++ S+ + RL +E + +G R D + +H + F KT + + L + Sbjct: 175 EALASK--RARLVYELCVGTGQRIGDVVKMKWEHFSDEGFDFTQGKTDKPLWIPLTNRLK 232 Query: 243 KLLAMTPIGKETFFINNDKQKMNA----TQFSIWFKAKATKAGVNKSAHGVRKFSATISA 298 L T + + ++ + + + HG+RK + Sbjct: 233 THLEGIARTDGTVVTDAKDRPVSYRIVAEEMRTIKRKMKHEKASYYKTHGLRKNATIELY 292 Query: 299 DAGATAHELMATYGWKTVDQAETY---TKGADRIRLGIKNSRRISSVVD 344 AG + A G V+ + Y + + + + ++ Sbjct: 293 LAGCDDEMVKAVTGHSGVEMLKKYGGPIRQRELAKRAQEARNQMERSKT 341 >gi|332186170|ref|ZP_08387916.1| phage integrase family protein [Sphingomonas sp. S17] gi|332013985|gb|EGI56044.1| phage integrase family protein [Sphingomonas sp. S17] Length = 367 Score = 212 bits (539), Expect = 9e-53, Method: Composition-based stats. Identities = 68/338 (20%), Positives = 121/338 (35%), Gaps = 29/338 (8%) Query: 20 KIIYYFRKGHGRRIRLPY-------PHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72 + YY+ +G G L P F+ +Y +A+ R TL+ Sbjct: 20 RATYYYLRGSGALNPLEGDEDQPFAPGTPAFMRSYYAAIDAPRRAR--------TAGTLQ 71 Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYR-----KITTKHIRSGVESRK 127 +I Y KS + LA ++ + + +I K G KI + + E K Sbjct: 72 SVIDAYEKSPQFTKLAPRTQRDYGTALLKISDKFGTHPLAVVEDPKIRIRFLEWRDEMAK 131 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 +P A L +R++ +W + ++ N ++ R + W D++ ++ S Sbjct: 132 SSPRQADAVLGVLRIVLEWGRDRGHLIHNHATRPKKVYRADRADKLWLPADIEALRAVAS 191 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM 247 + RLAFE L +G R D ++ K + + + LL Sbjct: 192 P--EIRLAFELALGTGQRKGDLLALTWSSYDGQRIQLRQAKRKRFVDMPVTRSLKALLDA 249 Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHE 306 P T + + + F ++ +AG N H +R + T+ A AGAT E Sbjct: 250 QPRTAATIL-TRNGKPWGSVNFDHRWRETVLQAGRNGLHFHDLRGTACTVLAQAGATPSE 308 Query: 307 LMATYGW---KTVDQAETYTKGADRIRLGIKNSRRISS 341 + A GW + Y A L ++ + Sbjct: 309 IAAMLGWTVSTVARMLDLY--QAMTASLSDSAVAKLEA 344 >gi|126461390|ref|YP_001042504.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17029] gi|126103054|gb|ABN75732.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17029] Length = 389 Score = 211 bits (538), Expect = 1e-52, Method: Composition-based stats. Identities = 59/237 (24%), Positives = 101/237 (42%), Gaps = 6/237 (2%) Query: 109 FDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168 + + +H+ TP A + L + L AV+ E NP V+R K + Sbjct: 131 LQHAPMRVRHVMEIKAGLSATPQKAKKTLKRLSQLMDLAVKLEMRGDNPVKGVDRYKTGS 190 Query: 169 EGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228 G WT+ ++ +F + G+ L+ +LYSG D+ + G +++ + QK Sbjct: 191 GGFHAWTEAEIARFFEVYLPGTPAFLSMTLMLYSGASRCDAVKLGWGNIRGGRLEYRRQK 250 Query: 229 T-----GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283 T G ++++ + + L P G TF + AT + KAG+ Sbjct: 251 TRKNPEGILVSIPVHPFLAEALQAVPNGAFTFLQTEQGKSRTATGLGTAMRKWCDKAGLP 310 Query: 284 -KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339 S+HG+RK A+AG AHE+M+ G T+ +A+ Y + R L R+ Sbjct: 311 LCSSHGLRKAICRRIAEAGGEAHEIMSVSGHITLAEAQRYCEDFGRKGLADSAIARL 367 >gi|254719515|ref|ZP_05181326.1| integrase/recombinase protein [Brucella sp. 83/13] Length = 290 Score = 208 bits (530), Expect = 9e-52, Method: Composition-based stats. Identities = 51/253 (20%), Positives = 106/253 (41%), Gaps = 9/253 (3%) Query: 37 YPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFE 96 F Y L G ++ + R +P +++WL+ Y +S + S + ++ + Sbjct: 10 GSITQAFTEEYHRVLAGGRGEK-AVPISRLEPGSVRWLVETYYRSKAFQSQSPATQKDKK 68 Query: 97 SYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAIN 156 S ++ G+ ++KI I + R TP +A + + ++ LF WA+ E Sbjct: 69 SVLNRYCLNVGELPFKKIRKSDIEASQMKRSGTPGAADKLVKYLKALFNWAISAELATFT 128 Query: 157 PCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH 216 P V + ++ G W++ ++ ++++ + GS RLA E +L G+R SD + G ++ Sbjct: 129 PANGVTKI-HQSPGFHTWSEAELARYRAAYPLGSMARLAMELMLNLGVRRSDLVKLGWRN 187 Query: 217 LQNNIFSIKTQKTG----TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIW 272 L + +K +++ + D + L + TF I + + F Sbjct: 188 LVGDRIEFMPEKGSGKYAQSLSLPVTDELREALDAITHDQPTFLITEYGKAFSGNGFGNK 247 Query: 273 FKAK---ATKAGV 282 + AG+ Sbjct: 248 MRQWVQRCRFAGM 260 >gi|170742031|ref|YP_001770686.1| integrase family protein [Methylobacterium sp. 4-46] gi|168196305|gb|ACA18252.1| integrase family protein [Methylobacterium sp. 4-46] Length = 349 Score = 208 bits (530), Expect = 9e-52, Method: Composition-based stats. Identities = 60/336 (17%), Positives = 117/336 (34%), Gaps = 21/336 (6%) Query: 20 KIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYR 79 + +Y KG R P F+ +Y +A+ ++ L LI ++ Sbjct: 21 RTYWYAWKGGPRLE--GEPGTPEFMASYNTAVARRVETKQ---------GVLLSLIQGFQ 69 Query: 80 KSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT-----PSSAI 134 S + +R + + I ++ GDF +T + R + + A Sbjct: 70 ASDSFLGKEPRTRADYVRHIKVIEQEFGDFPLGALTDRRTRGEFLTWRDRLAVRSRRQAD 129 Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194 + + + WA+ + + NPC R R + + WT +D ++F + L Sbjct: 130 YAWSVLARILSWALDRGLILANPCERGGRLYRASRTDKVWTDDDERRFLASAPAHLH--L 187 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET 254 L++G R D R +K KTG + + + L P Sbjct: 188 PLILALWTGQRQGDLLRLPWSAYDGETVRLKQGKTGARVVIPVGAPLRAALDAAPRVSPV 247 Query: 255 FFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGW 313 +N++ + F + AG+ + H +R + + A AG + E+ G Sbjct: 248 ILVNSEGRPWTGDGFRSSWGKACRAAGIRGLTFHDLRGTAVSRLALAGCSEAEIATLTGH 307 Query: 314 KTVDQAETY-TKGADRI-RLGIKNSRRISSVVDSDD 347 D +R L + R++ + ++S D Sbjct: 308 SLRDVRSILDAHYLNRDPALALAAVRKLETRMNSPD 343 >gi|85708305|ref|ZP_01039371.1| putative integrase [Erythrobacter sp. NAP1] gi|85689839|gb|EAQ29842.1| putative integrase [Erythrobacter sp. NAP1] Length = 351 Score = 208 bits (529), Expect = 1e-51, Method: Composition-based stats. Identities = 71/350 (20%), Positives = 119/350 (34%), Gaps = 31/350 (8%) Query: 12 TKERTRHGKII-YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70 K+R GK + YY+ G R+ P FI +Y +AL P Sbjct: 11 VKKRLASGKTVTYYYAWKGGPRLE-GEPGSPKFIESYNAALATRFTTP---------PDQ 60 Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---- 126 L+ ++ +Y+ S + LA +R ++ + I + GDF + + R + Sbjct: 61 LRSILKQYQASHSFTDLADRTRQDYKKHLRTIEAEYGDFPIEALADRRTRGEFLAWRERL 120 Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 K++ A + + WA + + +NPC R R T + WT ED Q+F Sbjct: 121 AKNSRRQADYAYAVLARVLSWASNRGFAPLNPCERPGRLYRSTRSTKVWTAEDEQRFYKH 180 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245 L L++G R D + QKT + + L Sbjct: 181 APRHLH--LPLLMALWTGQRQGDLLALRWSAYDGQYLRLTQQKTKVRVQIPAGKPLKAEL 238 Query: 246 AMTP----------IGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSA 294 +N A F ++ +AG+ + + H +R + Sbjct: 239 DALREARTKPANELAANSHILLNTRHSPWTAAGFRASWRKACKQAGIEDLTFHDLRGTAV 298 Query: 295 TISADAGATAHELMATYGWKTVDQAETY-TKGADR-IRLGIKNSRRISSV 342 T A AG T E+ G D + DR LG R++ + Sbjct: 299 TRLAIAGCTIPEIATITGHSLKDVGTILDSHYLDRNSALGESAIRKLEDL 348 >gi|77465633|ref|YP_355136.1| putative integrase [Rhodobacter sphaeroides 2.4.1] gi|77390051|gb|ABA81235.1| putative integrase [Rhodobacter sphaeroides 2.4.1] Length = 373 Score = 208 bits (529), Expect = 1e-51, Method: Composition-based stats. Identities = 65/345 (18%), Positives = 120/345 (34%), Gaps = 23/345 (6%) Query: 10 FVTKERTRHGKI-IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68 + + G+ +Y++ G RI P + F+ + P Sbjct: 18 HRVRRKLASGETAVYHYAWRGGPRIDA-APGSAEFV-------AAYNAAHAARDRPVHHD 69 Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH 128 TL+ LI+ Y+K+ + LA +R + + QI GD + + +R + Sbjct: 70 GTLQALITAYQKTPAFTDLAEATRKGYIRHIRQIEADFGDMPVQALADPRVRGEFLDWRD 129 Query: 129 T-----PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 SA + + + WA + + +NPC R + WT+ + F Sbjct: 130 RLAQKSKRSADYAFSVLARILSWAHDRRKIPVNPCEKPGRLYTGSRADSIWTEAQIAAFL 189 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243 + RL F +++G R +D + ++ KTG + + + + Sbjct: 190 AVAPR--PVRLPFLLAIWTGQRQADILQLTWTAYDGQAIRLRQSKTGRHMLIPVAQPLRE 247 Query: 244 LLAMTPIGKE--TFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADA 300 + + T + Q + F F AG+ + H +R + T A A Sbjct: 248 AMEEAKARRRTLTICETSRGQPWTSDGFKTSFGKAQASAGIEGVTFHDLRGTAVTFLALA 307 Query: 301 GATAHELMATYGWKTVDQAETYTK---GADRIRLGIKNSRRISSV 342 G + E+ A G D +K G DR RLG ++ Sbjct: 308 GCSVPEIAALTGHSLKDAEGILSKHYLGRDR-RLGESAVAKLEKH 351 >gi|46205283|ref|ZP_00209783.1| COG0582: Integrase [Magnetospirillum magnetotacticum MS-1] Length = 300 Score = 207 bits (528), Expect = 1e-51, Method: Composition-based stats. Identities = 63/234 (26%), Positives = 111/234 (47%), Gaps = 6/234 (2%) Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 +R +SR+ TP++A L ++R LF WAV + +P V+R + ++G W+ + Sbjct: 1 MRQMRDSRRGTPAAANTLLKALRALFSWAVEHDLAPGDPTREVKRVRYASKGHHSWSLTE 60 Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI----IT 234 ++ +++ G++ RLA LLY+ R D R G +H+ K + Sbjct: 61 VEAYEAVHPLGTKARLALALLLYTAGRREDVVRLGPRHVSAGRMRYVQAKNEHRAPVAMD 120 Query: 235 VELPDGFMKLLA-MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKF 292 + + + +A + P +F + + + F FK +A + + SAHG RK Sbjct: 121 IPIHPDLAEAIASVPPSSCPSFLETDYGRSFSPNGFGNRFKEWCIQAALPHCSAHGCRKA 180 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSD 346 +A A+ GAT H++MA G +T+++ E YT+ A R RL + SD Sbjct: 181 TAARLAERGATPHQIMAITGHRTLEEVERYTREAQRARLADDAMALLPRRSGSD 234 >gi|126461447|ref|YP_001042561.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17029] gi|126103111|gb|ABN75789.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17029] Length = 363 Score = 207 bits (527), Expect = 2e-51, Method: Composition-based stats. Identities = 67/345 (19%), Positives = 134/345 (38%), Gaps = 26/345 (7%) Query: 9 PFVTKERTRHGKIIYYFRKGHGRRIRLP----YPHESTFIPAYMSALTGST-PKREYINS 63 P + E+ G Y R GR+ + P F+ Y + G Sbjct: 6 PGLWAEKMPSGATRYRVR-AEGRKTVITLIPVGPDHPDFLSHYSAGRQGEKWAGPATAPQ 64 Query: 64 PRKKPTTLKWLISEYRKS----AHWGSLAVNSRISFESYFDQIIR-------KSGDFDYR 112 P+ +++WL+ Y ++ + S + G++D+R Sbjct: 65 PKAVTHSIQWLVGRYLTHLESLVEAKLASLLTLRQRRSQLRRFCEMPTEDGGTYGEYDFR 124 Query: 113 KITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGI 171 + I + + +H P A + S+ +++WA+ + E NP +++ + G Sbjct: 125 APRSA-IIAARDQWRHKPGEADNLVKSISAMYRWAIDEAEIATENPAAGIKKLNKGGGGA 183 Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQ 227 WT +D+++F+ G+ L +++ R D+ + G + + + Sbjct: 184 AAWTADDLKRFREAHPFGTTAHLWLTLQMFTACRIDDARKLGRSNEIDRGGTLWLEFQPG 243 Query: 228 KTGT-IITVELPDGFMKLLAMTPIGKETFFINNDKQKM-NATQFSIWFKAKATKAGV-NK 284 K G+ +++ + +K + T+ + + A + AG+ K Sbjct: 244 KKGSAPVSIPMLPPLLKAARAQKVQGATYLLTAAGKPFSTAESLRNRVQKWCAAAGIEGK 303 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 S+HG+RK +A + A+AG T H++MA +E YTKGA R Sbjct: 304 SSHGIRKAAAELLAEAGCTQHQIMALMAHTQAKTSEIYTKGAQRR 348 >gi|220922617|ref|YP_002497919.1| integrase family protein [Methylobacterium nodulans ORS 2060] gi|219947224|gb|ACL57616.1| integrase family protein [Methylobacterium nodulans ORS 2060] Length = 421 Score = 206 bits (525), Expect = 3e-51, Method: Composition-based stats. Identities = 67/352 (19%), Positives = 131/352 (37%), Gaps = 27/352 (7%) Query: 11 VTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70 + +RT G + H RR LP P + A+ AL + + + ++ +K T Sbjct: 56 LDAQRTDAGWTWAWVAPSH-RRHPLPDPRAEGGMEAFWRALDTAAEREKLGDAEDRK--T 112 Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130 LI+ YR+ A + L+ ++ +E + I GD +TT + ++S + TP Sbjct: 113 FAALIALYREHAIYTKLSALTQRDYERHLRLIAEFWGDDPVADLTTVDAQKAIDSFQATP 172 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 + A F + L + + + + N + E+ + + PW + F G Sbjct: 173 AVARYFRAVLSRLIAFGIPRGFATANVVEATEKVAHEVDPHEPWPDWAFETFFEHARVGL 232 Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPI 250 L LY+G R D + N + +KTG + V + + ++L T + Sbjct: 233 H--LPVYSALYTGQRSIDVIPMHRPAVGANAIEMIARKTGAAVYVPIHSEYREILTRTHV 290 Query: 251 GKETFFINNDKQKMNATQF-SIWFKAK--------------ATKAGVNK------SAHGV 289 + D + + W + A KA + + HG+ Sbjct: 291 DHPALHLREDGTPWTLGAYRTAWQRDFTSINAKGQPTTASPAKKAAMQRLREGGFVFHGL 350 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341 RK + + + G T E+ A + Y + ++ RL + +++ Sbjct: 351 RKNAVNMLLETGCTEAEVSAIV-EMSEQMVRHYARDVNKRRLAVNAMKKLEE 401 >gi|153009120|ref|YP_001370335.1| phage integrase family protein [Ochrobactrum anthropi ATCC 49188] gi|151561008|gb|ABS14506.1| phage integrase family protein [Ochrobactrum anthropi ATCC 49188] Length = 361 Score = 206 bits (524), Expect = 4e-51, Method: Composition-based stats. Identities = 79/340 (23%), Positives = 131/340 (38%), Gaps = 30/340 (8%) Query: 4 SLRLPPFVTKERTRHGKIIYYFRKGHG-----RRIRLP-YPHESTFIPAYMSALTGSTPK 57 ++ LP V + +R GK +Y++ G G R++LP PH F A A S P Sbjct: 10 TVSLPKGVHRVVSR-GKEYFYYQTGRGTNHVGERVKLPNDPHSPEFWQAVRQAQGISGP- 67 Query: 58 REYINSPRKKPTTLKWLISEYRKSAHW----GSLAVNSRISFESYFDQIIRKSGDFDYRK 113 T+ LI Y A W LAV++ + + + GD Sbjct: 68 --------VVDGTIGALIDAY--EAAWPGLPRKLAVSTTEQYRRQLRIVRKVWGDLQAEA 117 Query: 114 ITTKHIRSGVES-RKHTPSSAIQFLTSMRVLFKWAVR-QEYVAINPCLSVERPKRKTEGI 171 + H+++ +E TP +A L ++R + +WA +E + +P V ++ EG Sbjct: 118 LRPSHVQALMEKIGATTPGAANNLLDALRAMCRWASGPRELLGRDPTQGVAHF-QQGEGH 176 Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231 +PWT + + F G R A+ Y+G R SD R G + FS+ +KTG Sbjct: 177 KPWTPDQL-AFADKNFTGMLHR-AYVLARYTGQRISDVVRLGWNDIDEGGFSLPQKKTGV 234 Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGV 289 + +A F ++ + W T V + HG+ Sbjct: 235 RPWCPIFPELESEMAKWEKRPGPFLYQDNGKPFTTNLMWKWLNDARTGQPVIEDVVWHGL 294 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 R + G +A ++ G + E Y++ ADR Sbjct: 295 RANAVIRLRQDGFSAPQICDAVG-MSPQMVERYSRYADRK 333 >gi|325292872|ref|YP_004278736.1| integrase family protein [Agrobacterium sp. H13-3] gi|325060725|gb|ADY64416.1| integrase family protein [Agrobacterium sp. H13-3] Length = 346 Score = 205 bits (522), Expect = 7e-51, Method: Composition-based stats. Identities = 72/342 (21%), Positives = 126/342 (36%), Gaps = 22/342 (6%) Query: 12 TKERTRHGKIIYY-FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70 K+ GK IYY + G L P + + +P PT Sbjct: 12 VKKTLTSGKTIYYCYAWRGGPL--LKNDKGEPIQPGDHLIKSAFRRAHDERRAP--SPTD 67 Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR----SGVESR 126 L LI+ YR S+ + + +R ++ Y D+I + ++ R +S Sbjct: 68 LSSLITLYRGSSDFRRTKLGTRHEYDRYLDKIRMQFDRLSLEELQQPSTRGAFKEWRDSL 127 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 TP +A + + +A + +++N R R T R W+ D+ F++ Sbjct: 128 ADTPRTADFAWMVLVRVLSFAKDRGMISVNIAERGGRLYRSTRRDRTWSDADVAAFEAVA 187 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246 SQ RLA + L++G R D R KT + V + G++ + Sbjct: 188 P--SQMRLAIQLALWTGQRKGDLLRLSWCDFDGANLRFIQSKTKARVLVPM--GYLADVL 243 Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAH 305 + G + + F+ ++ KAG+ + + H +R + T A AG T Sbjct: 244 CSQKGTGAILRTSRGSAWTSAGFNTSWRKCCAKAGITDLTFHDLRGTAITRMALAGCTVP 303 Query: 306 ELMATYGWKTVDQAE-----TYTKGADRIRLGIKNSRRISSV 342 E+ A G ++ E Y G R L R++ +V Sbjct: 304 EIAAVTGH-SLKDVEAILDMHYLGG--RTELAASAMRKMVAV 342 >gi|323136790|ref|ZP_08071871.1| integrase family protein [Methylocystis sp. ATCC 49242] gi|322398107|gb|EFY00628.1| integrase family protein [Methylocystis sp. ATCC 49242] Length = 357 Score = 205 bits (521), Expect = 1e-50, Method: Composition-based stats. Identities = 65/326 (19%), Positives = 121/326 (37%), Gaps = 21/326 (6%) Query: 15 RTRHGKIIYYFRKGHGRRIRLPYP-HESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73 + RHG+ Y RK +P + FI + + +P++KP L Sbjct: 13 KDRHGRWRCYHRKSRTPIDLARFPLGSAEFIAECARIVA-----LKEAQTPKEKPGALGM 67 Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH--TPS 131 LI +YR S + L+ ++ ++ +FD + D + + + Sbjct: 68 LICDYRASPAFLDLSARTQADYQKHFDYLR-PIADTPLARFDRPLVVRIRDKAAAAKGRR 126 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVE---RPKRKTEGIRPWTKEDMQQFKSFWSE 188 ++ V+F W + Y+A NP ++ RPK + RPW+ + Sbjct: 127 FGNYLKATLSVVFGWGRERGYLADNPASGIKAIRRPKGAPDANRPWSDAERHAVLDAAPA 186 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT 248 P A ++ +GL D+ H ++ + K KTG + +P+ +L Sbjct: 187 HMLP--AIALMMMTGLGPKDALALPRNHWRDGEIATKRAKTGEPVFWPVPEPLDAILRAA 244 Query: 249 PI-GKETFFINNDKQKMNATQFSIWFKAKATKA------GVNKSAHGVRKFSATISADAG 301 P T ++ + F ++ + G + +G+R A I +AG Sbjct: 245 PRHDAVTLCASSTGRPWTLDGFRASWRTLRLRLEAQGAIGPGLTLYGLRHTVAVILREAG 304 Query: 302 ATAHELMATYGWKTVDQAETYTKGAD 327 + G KT++ A Y +GAD Sbjct: 305 FDERTIADALGQKTIEMARRYARGAD 330 >gi|119385147|ref|YP_916203.1| phage integrase family protein [Paracoccus denitrificans PD1222] gi|119374914|gb|ABL70507.1| phage integrase family protein [Paracoccus denitrificans PD1222] Length = 307 Score = 199 bits (506), Expect = 5e-49, Method: Composition-based stats. Identities = 64/306 (20%), Positives = 105/306 (34%), Gaps = 21/306 (6%) Query: 41 STFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD 100 S F Y L G P N K L Y +S + L ++ ++ Y + Sbjct: 2 SAFWDHYNRRLKGREPLPTKRN--------FKTLRLSYVESDAFKHLKPRTKRDYQKYME 53 Query: 101 QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAI---NP 157 II GD D RKI T HI ++ A + VL A ++ NP Sbjct: 54 HIISIWGDLDPRKIETHHIYKLHQANADHWRQANYLVQVFVVLLNHARLIGFLKKEHGNP 113 Query: 158 CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL 217 + K+ +G PW E +F+ +PRL +E + G R D+ + H+ Sbjct: 114 AKGIPLFKQPGDGWEPWPDEVRAEFEELAPP--RPRLVYELSIGLGQRIGDTHKIRWDHI 171 Query: 218 QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKA 277 ++ + KT + V L + L+ T D + + + + Sbjct: 172 KDGEYDFTQGKTDKPLLVPLTNRLAAYLSTVKKEGLTIVCGRDGRPADYRTVTEEMRK-- 229 Query: 278 TKAGVNKS------AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 KA + HG+RK + AG + A G V+ + Y + L Sbjct: 230 IKAAMKHPETQRYVTHGLRKNATIELYQAGCDDEMVKAVTGHSGVEMLKKYGGRVRQREL 289 Query: 332 GIKNSR 337 + Sbjct: 290 ARRAQD 295 >gi|221369617|ref|YP_002520713.1| Phage integrase family protein [Rhodobacter sphaeroides KD131] gi|221162669|gb|ACM03640.1| Phage integrase family protein [Rhodobacter sphaeroides KD131] Length = 350 Score = 197 bits (500), Expect = 3e-48, Method: Composition-based stats. Identities = 65/332 (19%), Positives = 114/332 (34%), Gaps = 22/332 (6%) Query: 22 IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKS 81 +Y++ G RI P F+ + P TL+ LI+ Y+K+ Sbjct: 8 VYHYAWRGGPRIDA-APGSPEFV-------AAYNAAHAARDRPVHHDGTLQALITAYQKT 59 Query: 82 AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT-----PSSAIQF 136 + LA +R + + QI GD + + +R + SA Sbjct: 60 PAFTDLAEATRKGYIRHIRQIEADFGDMPVQALADPRVRGEFLDWRDRLAQKSKRSADYA 119 Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF 196 + + + WA + + +NPC R + WT+ + F + RL F Sbjct: 120 FSVLARILSWAHDRRKIPVNPCEKPGRLYAGSRADSIWTEAQIAAFLAAAPR--PVRLPF 177 Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL--AMTPIGKET 254 +++G R +D + ++ KTG + + + + A T Sbjct: 178 LLAIWTGQRQADILQLSWTAYDGKAIRLRQSKTGRHMLIPVAQPLRDAMEEARARRRTLT 237 Query: 255 FFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGW 313 + Q + F F AG+ + H +R + T A AG + E+ A G Sbjct: 238 ICETSRGQPWTSDGFKTSFGKAQASAGIEGVTFHDLRGTAVTFLALAGCSVPEIAALTGH 297 Query: 314 KTVDQAETYTK---GADRIRLGIKNSRRISSV 342 D +K G DR RLG ++ Sbjct: 298 SLKDAEGILSKHYLGRDR-RLGESAVAKLERH 328 >gi|254418822|ref|ZP_05032546.1| site-specific recombinase, phage integrase family protein [Brevundimonas sp. BAL3] gi|196184999|gb|EDX79975.1| site-specific recombinase, phage integrase family protein [Brevundimonas sp. BAL3] Length = 362 Score = 196 bits (497), Expect = 6e-48, Method: Composition-based stats. Identities = 72/361 (19%), Positives = 143/361 (39%), Gaps = 24/361 (6%) Query: 1 MTPS-LRLP-PFVTKERTRHGKI-IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPK 57 MTP+ ++LP K R ++ IY++R+ G + + + ++ A + + G Sbjct: 1 MTPAAIKLPGAHRVKMRLAGDRVGIYWYRRRGGPLL-MKFTGDT-LGDALRAEIAGQQDL 58 Query: 58 REYINSPRKKP----TTLKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYR 112 + +P +P T++ +++ ++ + + SL ++R + D+++ + GD R Sbjct: 59 IDAYATPTARPEPSVITVREIVTRFKAAPDGYLSLRDSTRKVWAPMLDRVVDEFGDLPAR 118 Query: 113 KITTKHIR----SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168 + K +R + TP SA + ++ + + V +E NP L V + Sbjct: 119 ALNAKGMRRAIIDWRDRYAATPRSADYGVQVLKRVLNFGVDRELCETNPALGVGTIYKNN 178 Query: 169 EGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228 + E++ + S RLA +G+R D + + K Sbjct: 179 RADQIIEPEELTAILANLSPA--ARLAVRLSAATGMRRGDLVDLRWSEVSDVSIERAAGK 236 Query: 229 TGTIITVELP------DGFMKLLAMTPIGK--ETFFINNDKQKMNATQFSIWFKAKATKA 280 + + + +P D +L + K TF + + K + + F A KA Sbjct: 237 STNGVRIMVPLIREARDVLTELRQIRDSAKVTSTFVLTSRKGPWHGDGLTSLFVRAAAKA 296 Query: 281 GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340 GV KS H +R +AT AG E+ +GW+ + + DR R+ R+ Sbjct: 297 GVKKSLHDLRGTAATRFVIAGLKDEEIADIFGWEPDRVRKIRVRYVDRARVAQGIITRLE 356 Query: 341 S 341 Sbjct: 357 R 357 >gi|326387303|ref|ZP_08208913.1| hypothetical protein Y88_1353 [Novosphingobium nitrogenifigens DSM 19370] gi|326208484|gb|EGD59291.1| hypothetical protein Y88_1353 [Novosphingobium nitrogenifigens DSM 19370] Length = 303 Score = 194 bits (493), Expect = 2e-47, Method: Composition-based stats. Identities = 56/296 (18%), Positives = 106/296 (35%), Gaps = 12/296 (4%) Query: 57 KREYINSPRKKP-TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT 115 K E SP K TL ++ YR+S + LA +++ + + D+I K G Sbjct: 9 KAEKARSPTKGALATLDDVLDRYRQSPEFSKLAESTKRDYRLWLDRISEKFGQAPIAAFE 68 Query: 116 TKHIR----SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171 + +R + P +A + +M + WA + + +N + + + Sbjct: 69 DQRMRTEIIDWRNTWADQPRTADKASVTMATVLGWAQGEGILPVNIATGIRQLHHVNKAD 128 Query: 172 RPWTKEDMQQFKSFWSEGSQPR------LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK 225 + W + + + + A +GLR D R + + + Sbjct: 129 QIWEDRHWEAMRGSKDKNGRSLYSDHLDRALRLASLTGLRLGDLVRVAWEDVGEKAIILT 188 Query: 226 TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS 285 T+K + + LL G N+ + + F KA G +++ Sbjct: 189 TRKRKGRAIIPILPDLRGLLDSIGTGAGPILRNSRGEPWTESGLGSVF-QKAKPDGFDRT 247 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341 H +R AT A G T E+ T GW +E ++ D R+ + R+S+ Sbjct: 248 MHDLRGTYATWLAMRGLTDEEIARTIGWTAKRISEIRSRYVDEARVIVSMVERLSA 303 >gi|146277418|ref|YP_001167577.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17025] gi|145555659|gb|ABP70272.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17025] Length = 336 Score = 191 bits (485), Expect = 1e-46, Method: Composition-based stats. Identities = 64/346 (18%), Positives = 118/346 (34%), Gaps = 25/346 (7%) Query: 4 SLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS 63 + P+V + + +Y++R G F Y ++G + Sbjct: 3 KIGRKPYVRETKP---GFVYFYRGGKYLHRFTAPEGTEEFDRQYWEVMSGKKQE------ 53 Query: 64 PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123 + I R+S W + ++ R E + + K G D ++T I + Sbjct: 54 ---AKRSWGAAIEVLRQSDRWAAKSLRYRQDLEPVLEYLGEKIGKRDVARLTQADIYEAM 110 Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE---GIRPWTKEDMQ 180 + KH A ++ ++ K +R+ ++ NP +ER K E PW + Sbjct: 111 DRNKHRVRFANYIPVAISMIAKEVIRRRWLEDNPAKGIERLKVPKERQRPHVPWPDAAVV 170 Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP-- 238 +F++ G RL FE + + R SD + ++ KTG + + Sbjct: 171 KFRA--EAGDLERLIFEIGVGTVQRPSDWIGFRWGDYDGDSLVLRQGKTGKPLVLPCTVA 228 Query: 239 -----DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKF 292 D L P+ D +M+ + + A+ + G+ H +R Sbjct: 229 LKAALDKAKAALPFAPMPSRHIITKQDGSRMDYRRLAEIMLAERARLGLEAYDLHALRYR 288 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRR 338 A AG E+MA G T Y A +I + + Sbjct: 289 GVMELAWAGCDDDEIMAYSGHSTKAMVRKYAGEARQIMRARQARGK 334 >gi|222147672|ref|YP_002548629.1| phage-related integrase [Agrobacterium vitis S4] gi|221734660|gb|ACM35623.1| phage-related integrase [Agrobacterium vitis S4] Length = 349 Score = 191 bits (484), Expect = 2e-46, Method: Composition-based stats. Identities = 59/344 (17%), Positives = 115/344 (33%), Gaps = 19/344 (5%) Query: 12 TKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71 K++ G + YF G P + F+ AY +A++ + TL Sbjct: 17 VKKKLADGTPVTYFYAWKGGPPLPGKPGDPEFMAAYNAAISRKVEPQ---------AGTL 67 Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR-----SGVESR 126 + +++ ++ S+ W LA ++ + I ++ G F + + + E Sbjct: 68 QSILNAFQVSSDWDDLAPRTKSDYVKLIKVIEKEFGTFPISGLKNRRAKSIFLSWRDERA 127 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + + A + + WA+ + + NPC R + + WT +D F + Sbjct: 128 RASRRQADYGWQVLARILSWALGRGLIEANPCEKGGRLYQGSRAEFVWTGDDEANFLASA 187 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246 L ++G R D +K KTG + + + +L Sbjct: 188 PPHLHLALILAL--WTGQRQGDLLALTWPQYDGERIRLKQGKTGARVVIPVGGPLKAMLD 245 Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG-VNKSAHGVRKFSATISADAGATAH 305 + D + FS ++ AG V + + +R + T A AG T Sbjct: 246 PIRQKVGHVLLTLDGTPWTSGGFSSSWRKACAAAGVVGVTFNDLRGTAVTRLALAGCTEA 305 Query: 306 ELMATYGWKTVDQAETY-TKGADRI-RLGIKNSRRISSVVDSDD 347 E+ G D + +R LG R++ + Sbjct: 306 EIATISGHSLRDVRSILDSNYLNRDPELGENAIRKLEGRTKFPN 349 >gi|126464099|ref|YP_001045212.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17029] gi|126105910|gb|ABN78440.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17029] Length = 360 Score = 191 bits (484), Expect = 2e-46, Method: Composition-based stats. Identities = 68/345 (19%), Positives = 119/345 (34%), Gaps = 23/345 (6%) Query: 10 FVTKERTRHGKI-IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68 + R GKI +Y++ G RI P F+ + P Sbjct: 5 HRVRRRLASGKIAVYHYAWRGGPRIDA-APGSPEFV-------AAYNAAHAARDRPAHHD 56 Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH 128 TL+ LI+ Y+K+ + LA +R + + QI GD + + +R + Sbjct: 57 GTLQALITAYQKTPAFTDLAEATRKGYIRHIRQIEADFGDMPVQALADPRVRGEFLDWRD 116 Query: 129 T-----PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 SA + + + WA + + +NPC R + WT+ + F Sbjct: 117 RLAQKSKRSADYAFSVLARILSWAHDRRKIPVNPCEKPGRLYTGSRADSIWTEAQIAAFL 176 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243 + RL F +++G R +D + ++ KTG + + + + Sbjct: 177 AAAPR--PVRLPFLLAIWTGQRQADILQLTWTAYDGKAIRLRQSKTGRHMLIPVAQPLRE 234 Query: 244 LL--AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADA 300 + A T + Q + F F A + + H +R + T A A Sbjct: 235 AMEEARARRRTLTICETSRGQAWTSDGFKTSFGKAQAAARIEGVTFHDLRGTAVTFLALA 294 Query: 301 GATAHELMATYGWKTVDQAETYTK---GADRIRLGIKNSRRISSV 342 G + E+ A G D +K G DR RLG ++ Sbjct: 295 GCSVPEIAALTGHSLKDAEGILSKHYLGRDR-RLGESAVAKLERH 338 >gi|13476600|ref|NP_108170.1| integrase [Mesorhizobium loti MAFF303099] gi|14027362|dbj|BAB53631.1| integrase [Mesorhizobium loti MAFF303099] Length = 343 Score = 189 bits (479), Expect = 7e-46, Method: Composition-based stats. Identities = 64/319 (20%), Positives = 116/319 (36%), Gaps = 23/319 (7%) Query: 10 FVTKERTRHGKII-YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68 K + G YY+ G +I PH F Y K + + +P+ Sbjct: 9 HKVKRKLADGSTRVYYYAWRGGPKIEAK-PHTEAFALEY--------AKLKALATPKIVE 59 Query: 69 TTLKWLISEY-----RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI---- 119 TL+ LI + +++ + +LA ++ F I K R K + Sbjct: 60 -TLETLIDRFTGPEDKRNPDFLALADTTQTDHLYAFRLIKEKWPKLPVRLTQQKGMKAEI 118 Query: 120 RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179 R S P A + L S+ +F +AV E + NPC +ER + W++E + Sbjct: 119 RKWHRSFAANPRKADKLLFSLSKVFSYAVADELIDKNPCTGIERLYNGSRRESVWSQEQI 178 Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD 239 + F++ LAFE L++G R D + + K G + V + Sbjct: 179 KAFRAGAPA--HLLLAFEMALHTGQRQGDLLSRSWKDYDGIYLQFRQSKGGKKLKVRVHS 236 Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISA 298 +L + K +N+ K+ F + + T+ + + H +R T A Sbjct: 237 KLKAMLDVLDKDKMRILLNSRKRPWTKDGFKTSWGKECTRLQIEGVTFHDLRGTFITERA 296 Query: 299 DAGATAHELMATYGWKTVD 317 G++ ++ G + Sbjct: 297 REGSSVEDIAKISGHSISE 315 >gi|77462513|ref|YP_352017.1| integrase/recombinase [Rhodobacter sphaeroides 2.4.1] gi|77386931|gb|ABA78116.1| Possible integrase/recombinase [Rhodobacter sphaeroides 2.4.1] Length = 296 Score = 188 bits (477), Expect = 1e-45, Method: Composition-based stats. Identities = 55/281 (19%), Positives = 116/281 (41%), Gaps = 20/281 (7%) Query: 68 PTTLKWLISEYRKS----AHWGSLAVNSRISFESYFDQIIR-------KSGDFDYRKITT 116 +++WL+ Y ++ + S + G++D+R + Sbjct: 2 THSIQWLVGRYLTHLESLVEAKLASLLTLRQRRSQLRRFCEMPTEDGGTYGEYDFRAPRS 61 Query: 117 KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWT 175 I + + +H P A + S+ +++WA+ + E NP + +++ + G WT Sbjct: 62 A-IIAARDQWRHKPGEADNLVKSISAMYRWAIDEAEIATENPAVGIKKLNKGGGGAAAWT 120 Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQKTGT 231 +D+++F+ G+ L +++ R D+ + G + + + K G+ Sbjct: 121 ADDLKRFREAHPFGTTAHLWLTLQMFTACRIDDARKLGRSNEIDRGGTLWLEFQPGKKGS 180 Query: 232 -IITVELPDGFMKLLAMTPIGKETFFINNDKQKM-NATQFSIWFKAKATKAGV-NKSAHG 288 +++ + +K + T+ + + A + AG+ KS+HG Sbjct: 181 APVSIPMLPPLLKAARAQKVQGATYLLTAAGKPFSTAESLRNRVQKWCAAAGIEGKSSHG 240 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 +RK +A + A+AG T H++MA +E YTKGA R Sbjct: 241 IRKAAAELLAEAGCTQHQIMALMAHTQAKTSEIYTKGAQRR 281 >gi|209550058|ref|YP_002281975.1| integrase family protein [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209535814|gb|ACI55749.1| integrase family protein [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 345 Score = 187 bits (476), Expect = 2e-45, Method: Composition-based stats. Identities = 71/333 (21%), Positives = 121/333 (36%), Gaps = 25/333 (7%) Query: 21 IIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRK 80 YY +G G P F Y+ LT K + T+ LI E+RK Sbjct: 22 TYYYAWRGKGAPRMHAKPGTKAFTQEYVR-LTREREKA-------SEDGTIGSLIDEFRK 73 Query: 81 SAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS----GVESRKHTPSSAIQF 136 +A + LA ++R +E F I K F + I + R ++ + +P SA Sbjct: 74 TAGYMKLAASTRRDYERQFAMIRLKFEGFPIKAIEARGSRRIFLNWRDTMRDSPRSADMH 133 Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF 196 + + LF WA E + NP VER T WT + + + + R Sbjct: 134 IALLSRLFSWAKGNEVILRNPLEEVERLHSGTRKDIIWTDDQLAKLLT--EGVPHLRNVA 191 Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-ELPDGFMKLLAMTPIGKETF 255 L++ R +D SI+ KTG + V PD L ++ Sbjct: 192 LVALWTMQRQADILSMPTLAFDGERVSIRQGKTGARVRVMAAPDILPVLKDAKTTSRQRV 251 Query: 256 FINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHE-----LMA 309 +N+ Q ++ F ++ + + G+ + H +R + T + AH+ + Sbjct: 252 LVNSFGQNWTSSGFRASWRKEMARLGIKGVTFHDLRGTAITFAYANLDKAHDEKIKLISE 311 Query: 310 TYGWKTVDQA----ETYTKGADRIRLGIKNSRR 338 G D + Y G D I + +++ Sbjct: 312 ISGHSQDDAESIIRKHYLAGQDVIDAISRGTKK 344 >gi|163737292|ref|ZP_02144710.1| Integrase [Phaeobacter gallaeciensis BS107] gi|161389896|gb|EDQ14247.1| Integrase [Phaeobacter gallaeciensis BS107] Length = 370 Score = 187 bits (475), Expect = 2e-45, Method: Composition-based stats. Identities = 73/353 (20%), Positives = 120/353 (33%), Gaps = 26/353 (7%) Query: 15 RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74 + RHGK Y R+ + + + + E + K TL L Sbjct: 13 KDRHGKQRCYHRETGHK---VDLTDAPIGSAKFFAECETIRAIAEAQRAKAPKAGTLGGL 69 Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKHTPSS 132 I Y ++ H+ +LA +R + D + D I T I + +K Sbjct: 70 IQSYFETEHYQNLAEATRRDYRKCAD-FLEPIRDTPIHVIDTPLIAGIHDKAAKKIGWRR 128 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSV---ERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 A T + +F++ + + ++ N V RP+ + RPWT E+ Sbjct: 129 ANMVRTLLSEVFRYNIPKGLISANFAKDVIPKRRPRDRAYANRPWTIEERDTVLGKAKP- 187 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTP 249 R+A ++ +GL SD+ R + KTG + + + L P Sbjct: 188 -HVRVALALMMNTGLDPSDALRLRNDQVDGGTIWGVRGKTGEEVAIPVSPTLQAALNRMP 246 Query: 250 I-GKETFFINNDKQKMNATQF---SIWFKAKATKAGV---NKSAHGVRKFSATISADAGA 302 ET N+ + F FK G+ + G+R AT +AG Sbjct: 247 NHDAETVLSNSRGEAWTYNGFSTVWHRFKTALENEGLIEKGLTLKGLRHTVATTLREAGL 306 Query: 303 TAHELMATYGWKTVDQAETYTKGADRIR--------LGIKNSRRISSVVDSDD 347 + G KT A Y++ A+ L +N RR SV S Sbjct: 307 DERRIADLLGQKTPSMARHYSRSANLANKNRETMATLEEENRRRAESVKPSQK 359 >gi|294852313|ref|ZP_06792986.1| hypothetical protein BAZG_01235 [Brucella sp. NVSL 07-0026] gi|294820902|gb|EFG37901.1| hypothetical protein BAZG_01235 [Brucella sp. NVSL 07-0026] Length = 341 Score = 186 bits (472), Expect = 5e-45, Method: Composition-based stats. Identities = 63/341 (18%), Positives = 119/341 (34%), Gaps = 24/341 (7%) Query: 14 ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73 + G+ YY +G G +R P + F+ + A + P + Sbjct: 11 KVNAKGRTYYYAWRG-GPALR-GEPGSAEFMDSLQEA-------NDSWVIPDASK--FRA 59 Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT-----TKHIRSGVESRKH 128 +I+ Y+ S + LA +++ ++ + D+I +K GD + IR Sbjct: 60 VITAYKSSHDYQKLADSTKRNWNGWLDRIGKKFGDLSIAQFDLPQKIRPVIRKWRGEFAD 119 Query: 129 TPSSAIQFLTSMRVLFKWAVR-QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 P +A + + + +AV ++ NPC +++ + WT +D+ + K+ S Sbjct: 120 KPRTADYGMQVLSRVLSYAVDPLGKISQNPCEGIKQLYKNDRAAIIWTDQDIARLKTKCS 179 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--TIITVELPDGFMKLL 245 + A + ++GLR D R H+ +N + T K+ + L LL Sbjct: 180 P--EVAWAVDLAAHTGLRAGDLLRLSWSHITDNAIILPTGKSRHTKEAVIPLYAELRALL 237 Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSATISADAGA 302 P N K F F +A + + H R AT AG Sbjct: 238 QTIPRRSPIVLTNTRKAPWTVNGFGSSFSDCREEAKLGDRDLHFHDFRGTVATKFYIAGL 297 Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343 + + GW+ + R + ++I Sbjct: 298 SERVIAEIMGWEEETVRNIIRRYVSRTAAIVATIKQIDEAR 338 >gi|23501849|ref|NP_697976.1| phage integrase family site specific recombinase [Brucella suis 1330] gi|62289895|ref|YP_221688.1| phage integrase family site specific recombinase [Brucella abortus bv. 1 str. 9-941] gi|82699825|ref|YP_414399.1| phage integrase [Brucella melitensis biovar Abortus 2308] gi|161618919|ref|YP_001592806.1| hypothetical protein BCAN_A0980 [Brucella canis ATCC 23365] gi|163843233|ref|YP_001627637.1| hypothetical protein BSUIS_A1008 [Brucella suis ATCC 23445] gi|189024139|ref|YP_001934907.1| Phage integrase [Brucella abortus S19] gi|225627444|ref|ZP_03785481.1| phage integrase family site specific recombinase [Brucella ceti str. Cudo] gi|237815396|ref|ZP_04594394.1| phage integrase family site specific recombinase [Brucella abortus str. 2308 A] gi|254697338|ref|ZP_05159166.1| Phage integrase [Brucella abortus bv. 2 str. 86/8/59] gi|254706834|ref|ZP_05168662.1| Phage integrase [Brucella pinnipedialis M163/99/10] gi|254730236|ref|ZP_05188814.1| Phage integrase [Brucella abortus bv. 4 str. 292] gi|256061062|ref|ZP_05451218.1| Phage integrase [Brucella neotomae 5K33] gi|256159686|ref|ZP_05457439.1| Phage integrase [Brucella ceti M490/95/1] gi|256254954|ref|ZP_05460490.1| Phage integrase [Brucella ceti B1/94] gi|260168683|ref|ZP_05755494.1| Phage integrase [Brucella sp. F5/99] gi|260545355|ref|ZP_05821096.1| phage integrase [Brucella abortus NCTC 8038] gi|260566487|ref|ZP_05836957.1| phage integrase [Brucella suis bv. 4 str. 40] gi|260757928|ref|ZP_05870276.1| conserved hypothetical protein [Brucella abortus bv. 4 str. 292] gi|260761751|ref|ZP_05874094.1| conserved hypothetical protein [Brucella abortus bv. 2 str. 86/8/59] gi|261222140|ref|ZP_05936421.1| conserved hypothetical protein [Brucella ceti B1/94] gi|261314300|ref|ZP_05953497.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10] gi|261325065|ref|ZP_05964262.1| conserved hypothetical protein [Brucella neotomae 5K33] gi|261758160|ref|ZP_06001869.1| phage integrase [Brucella sp. F5/99] gi|265998104|ref|ZP_06110661.1| conserved hypothetical protein [Brucella ceti M490/95/1] gi|23347786|gb|AAN29891.1| site-specific recombinase, phage integrase family [Brucella suis 1330] gi|62196027|gb|AAX74327.1| site-specific recombinase, phage integrase family [Brucella abortus bv. 1 str. 9-941] gi|82615926|emb|CAJ10939.1| Phage integrase [Brucella melitensis biovar Abortus 2308] gi|161335730|gb|ABX62035.1| Hypothetical protein BCAN_A0980 [Brucella canis ATCC 23365] gi|163673956|gb|ABY38067.1| Hypothetical protein BSUIS_A1008 [Brucella suis ATCC 23445] gi|189019711|gb|ACD72433.1| Phage integrase [Brucella abortus S19] gi|225617449|gb|EEH14494.1| phage integrase family site specific recombinase [Brucella ceti str. Cudo] gi|237790233|gb|EEP64443.1| phage integrase family site specific recombinase [Brucella abortus str. 2308 A] gi|260096762|gb|EEW80637.1| phage integrase [Brucella abortus NCTC 8038] gi|260156005|gb|EEW91085.1| phage integrase [Brucella suis bv. 4 str. 40] gi|260668246|gb|EEX55186.1| conserved hypothetical protein [Brucella abortus bv. 4 str. 292] gi|260672183|gb|EEX59004.1| conserved hypothetical protein [Brucella abortus bv. 2 str. 86/8/59] gi|260920724|gb|EEX87377.1| conserved hypothetical protein [Brucella ceti B1/94] gi|261301045|gb|EEY04542.1| conserved hypothetical protein [Brucella neotomae 5K33] gi|261303326|gb|EEY06823.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10] gi|261738144|gb|EEY26140.1| phage integrase [Brucella sp. F5/99] gi|262552572|gb|EEZ08562.1| conserved hypothetical protein [Brucella ceti M490/95/1] Length = 341 Score = 186 bits (472), Expect = 5e-45, Method: Composition-based stats. Identities = 62/341 (18%), Positives = 119/341 (34%), Gaps = 24/341 (7%) Query: 14 ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73 + G+ YY +G G +R P + F+ + A + + + Sbjct: 11 KVNAKGRTYYYAWRG-GPALR-GEPGSAEFMASLQEA---------NDSRVIPDASKFRA 59 Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT-----TKHIRSGVESRKH 128 +I+ Y+ S + LA +++ ++ + D+I +K GD + IR Sbjct: 60 VITAYKSSHDYQKLADSTKRNWNGWLDRIGKKFGDLSIAQFDLPQKIRPVIRKWRGEFAD 119 Query: 129 TPSSAIQFLTSMRVLFKWAVR-QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 P +A + + + +AV ++ NPC +++ + WT +D+ + K+ S Sbjct: 120 KPRTADYGMQVLSRVLSYAVDPLGKISQNPCEGIKQLYKNDRAAIIWTDQDIARLKTKCS 179 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--TIITVELPDGFMKLL 245 + A + ++GLR D R H+ +N + T K+ + L LL Sbjct: 180 P--EVAWAVDLAAHTGLRAGDLLRLSWSHITDNAIILPTGKSRHTKEAVIPLYAELRALL 237 Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSATISADAGA 302 P N K F F +A + + H R +AT AG Sbjct: 238 QTIPRRSPIVLTNTRKAPWTVNGFGSSFSDCREEAKLGDRDLHFHDFRGTAATKFYIAGL 297 Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343 + + GW+ + R ++I Sbjct: 298 SERVIAEIMGWEEETVRNIIRRYVSRTAAIEATIKQIDEAR 338 >gi|256044630|ref|ZP_05447534.1| phage-related integrase [Brucella melitensis bv. 1 str. Rev.1] gi|265991056|ref|ZP_06103613.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. Rev.1] gi|263001840|gb|EEZ14415.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. Rev.1] Length = 341 Score = 185 bits (470), Expect = 8e-45, Method: Composition-based stats. Identities = 61/341 (17%), Positives = 119/341 (34%), Gaps = 24/341 (7%) Query: 14 ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73 + G+ YY +G G +R P + F+ + A + + + Sbjct: 11 KVNAKGRTYYYAWRG-GPALR-GEPGSAEFMASLQEA---------NDSRVIPDASKFRA 59 Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT-----TKHIRSGVESRKH 128 +I+ Y+ S + LA +++ ++ + D+I +K GD + IR Sbjct: 60 VITAYKSSHDYQKLADSTKRNWNGWLDRIGKKFGDLSITQFDLPQKIRPVIRKWRGEFAD 119 Query: 129 TPSSAIQFLTSMRVLFKWAVR-QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 P +A + + + +AV ++ NPC +++ + WT +D+ + K+ S Sbjct: 120 KPRTADYGMQVLSRVLSYAVDPLGKISQNPCEGIKQLYKNDRAAIIWTDQDIARLKTKCS 179 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--TIITVELPDGFMKLL 245 + A + ++GLR D R H+ +N + T K+ + L LL Sbjct: 180 P--EVAWAVDLAAHTGLRAGDLLRLSWSHITDNAIILPTGKSRHTKEAVIPLYAELRALL 237 Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSATISADAGA 302 P N K F F +A + + H R +AT AG Sbjct: 238 QTIPRRSPIVLTNTRKAPWTVNGFGSSFSDCREEAKLGDRDLHFHDFRGTAATKFYIAGL 297 Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343 + + GW+ + + ++I Sbjct: 298 SERVIAEIMGWEEETVRNIIRRYVSKTAAIEATIKQIDEAR 338 >gi|256369391|ref|YP_003106899.1| site-specific recombinase, phage integrase family [Brucella microti CCM 4915] gi|255999551|gb|ACU47950.1| site-specific recombinase, phage integrase family [Brucella microti CCM 4915] Length = 341 Score = 185 bits (470), Expect = 8e-45, Method: Composition-based stats. Identities = 62/341 (18%), Positives = 119/341 (34%), Gaps = 24/341 (7%) Query: 14 ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73 + G+ YY +G G +R P + F+ + A + + + Sbjct: 11 KVNAKGRTYYYAWRG-GPALR-GEPGSAEFMASLQEA---------NDSRVIPDASKFRA 59 Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT-----TKHIRSGVESRKH 128 +I+ Y+ S + LA +++ ++ + D+I +K GD + IR Sbjct: 60 VITAYKSSHDYQKLADSTKRNWNGWLDRIGKKFGDLSIAQFDLPQKIRPVIRKWRGEFAD 119 Query: 129 TPSSAIQFLTSMRVLFKWAVR-QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 P +A + + + +AV ++ NPC +++ + WT +D+ + K+ S Sbjct: 120 KPRTADYGMQVLSRVLSYAVDPLGKISQNPCEGIKQLYKNDRAAIIWTDQDIARLKTKCS 179 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--TIITVELPDGFMKLL 245 + A + ++GLR D R H+ +N + T K+ + L LL Sbjct: 180 P--EVAWAVDVAAHTGLRAGDLLRLSWSHITDNAIILPTGKSRHTKEAVIPLYAELRALL 237 Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSATISADAGA 302 P N K F F +A + + H R +AT AG Sbjct: 238 QTIPRRSPIVLTNTRKAPWTVNGFGSSFSDCREEAKLGDRDLHFHDFRGTAATKFYIAGL 297 Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343 + + GW+ + R ++I Sbjct: 298 SERVIAEIMGWEEETVRNIIRRYVSRTAAIEATIKQIDEAR 338 >gi|225852471|ref|YP_002732704.1| phage-related integrase [Brucella melitensis ATCC 23457] gi|256264035|ref|ZP_05466567.1| phage integrase [Brucella melitensis bv. 2 str. 63/9] gi|225640836|gb|ACO00750.1| phage-related integrase [Brucella melitensis ATCC 23457] gi|263094221|gb|EEZ18098.1| phage integrase [Brucella melitensis bv. 2 str. 63/9] gi|326408987|gb|ADZ66052.1| phage-related integrase [Brucella melitensis M28] Length = 341 Score = 185 bits (470), Expect = 8e-45, Method: Composition-based stats. Identities = 61/341 (17%), Positives = 119/341 (34%), Gaps = 24/341 (7%) Query: 14 ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73 + G+ YY +G G +R P + F+ + A + + + Sbjct: 11 KVNAKGRTYYYAWRG-GPALR-GEPGSAEFMASLQEA---------NDSRVIPDASKFRA 59 Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT-----TKHIRSGVESRKH 128 +I+ Y+ S + LA +++ ++ + D+I +K GD + IR Sbjct: 60 VITAYKSSHDYQKLADSTKRNWNGWLDRIGKKFGDLSIAQFDLPQKIRPVIRKWRGEFAD 119 Query: 129 TPSSAIQFLTSMRVLFKWAVR-QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 P +A + + + +AV ++ NPC +++ + WT +D+ + K+ S Sbjct: 120 KPRTADYGMQVLSRVLSYAVDPLGKISQNPCEGIKQLYKNDRAAIIWTDQDIARLKTKCS 179 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--TIITVELPDGFMKLL 245 + A + ++GLR D R H+ +N + T K+ + L LL Sbjct: 180 P--EVAWAVDLAAHTGLRAGDLLRLSWSHITDNAIILPTGKSRHTKEAVIPLYAELRALL 237 Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSATISADAGA 302 P N K F F +A + + H R +AT AG Sbjct: 238 QTIPRRSPIVLTNTRKAPWTVNGFGSSFSDCREEAKLGDRDLHFHDFRGTAATKFYIAGL 297 Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343 + + GW+ + + ++I Sbjct: 298 SERVIAEIMGWEEETVRNIIRRYVSKTAAIEATIKQIDEAR 338 >gi|254689202|ref|ZP_05152456.1| Phage integrase [Brucella abortus bv. 6 str. 870] gi|256257452|ref|ZP_05462988.1| Phage integrase [Brucella abortus bv. 9 str. C68] gi|260754704|ref|ZP_05867052.1| conserved hypothetical protein [Brucella abortus bv. 6 str. 870] gi|260883729|ref|ZP_05895343.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68] gi|297248299|ref|ZP_06932017.1| hypothetical protein BAYG_01242 [Brucella abortus bv. 5 str. B3196] gi|260674812|gb|EEX61633.1| conserved hypothetical protein [Brucella abortus bv. 6 str. 870] gi|260873257|gb|EEX80326.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68] gi|297175468|gb|EFH34815.1| hypothetical protein BAYG_01242 [Brucella abortus bv. 5 str. B3196] Length = 341 Score = 184 bits (468), Expect = 1e-44, Method: Composition-based stats. Identities = 62/341 (18%), Positives = 119/341 (34%), Gaps = 24/341 (7%) Query: 14 ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73 + G+ YY +G G +R P + F+ + A + + + Sbjct: 11 KVNAKGRTYYYAWRG-GPALR-GEPGSAEFMASLQEA---------NDSRVIPDASKFRA 59 Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT-----TKHIRSGVESRKH 128 +I+ Y+ S + LA +++ ++ + D+I +K GD + IR Sbjct: 60 VITAYKSSHDYQKLADSTKRNWNGWLDRIGKKFGDLSIAQFDLPQKIRPVIRKWRGEFAD 119 Query: 129 TPSSAIQFLTSMRVLFKWAVR-QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 P +A + + + +AV ++ NPC +++ + WT +D+ + K+ S Sbjct: 120 KPRTADYGMQVLSRVLSYAVDPLGKISQNPCEGIKQLYKNDRAAIIWTDQDIARLKTKCS 179 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--TIITVELPDGFMKLL 245 + A + ++GLR D R H+ +N + T K+ + L LL Sbjct: 180 P--EVAWAVDLAAHTGLRAGDLLRLSWSHITDNAIILPTGKSRHTKEAVIPLYAELRALL 237 Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSATISADAGA 302 P N K F F +A + + H R +AT AG Sbjct: 238 QTIPRRSPIVLTNTRKAPWTVNGFGSSFSDCRGEAKLGDRDLHFHDFRGTAATKFYIAGL 297 Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343 + + GW+ + R ++I Sbjct: 298 SERVIAEIMGWEEETVRNIIRRYVSRTAAIEATIKQIDEAR 338 >gi|260563980|ref|ZP_05834466.1| phage integrase [Brucella melitensis bv. 1 str. 16M] gi|260153996|gb|EEW89088.1| phage integrase [Brucella melitensis bv. 1 str. 16M] Length = 341 Score = 184 bits (467), Expect = 2e-44, Method: Composition-based stats. Identities = 61/341 (17%), Positives = 118/341 (34%), Gaps = 24/341 (7%) Query: 14 ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73 + G+ YY +G G +R P + F+ + A + + + Sbjct: 11 KVNAKGRTYYYAWRG-GPALR-GEPGSAEFMASLQEA---------NDSRVIPDASKFRA 59 Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT-----TKHIRSGVESRKH 128 +I+ Y+ S + LA +++ ++ + D+I +K GD + IR Sbjct: 60 VITAYKSSHDYQKLADSTKRNWNGWLDRIGKKFGDLSITQFDLPQKIRPVIRKWRGEFAD 119 Query: 129 TPSSAIQFLTSMRVLFKWAVR-QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 P +A + + + +AV ++ NPC +++ + WT +D+ + K+ S Sbjct: 120 KPRTADYGMQVLSRVLSYAVDPLGKISQNPCEGIKQLYKNDRAAIIWTDQDIARLKTKCS 179 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--TIITVELPDGFMKLL 245 + A + ++GLR D R H+ +N + T K+ + L LL Sbjct: 180 P--EVAWAVDLAAHTGLRAGDLLRLSWSHITDNAIILPTGKSRHTKEAVIPLYAELRALL 237 Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISADAGA 302 P N K F F +A + H R +AT AG Sbjct: 238 QTIPRRSPIVLTNTRKAPWTVNGFGSSFSDCREEAKLGDRDLYFHDFRGTAATKFYIAGL 297 Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343 + + GW+ + + ++I Sbjct: 298 SERVIAEIMGWEEETVRNIIRRYVSKTAAIEATIKQIDEAR 338 >gi|256113508|ref|ZP_05454342.1| phage-related integrase [Brucella melitensis bv. 3 str. Ether] gi|265994891|ref|ZP_06107448.1| conserved hypothetical protein [Brucella melitensis bv. 3 str. Ether] gi|262766004|gb|EEZ11793.1| conserved hypothetical protein [Brucella melitensis bv. 3 str. Ether] Length = 341 Score = 184 bits (466), Expect = 2e-44, Method: Composition-based stats. Identities = 61/341 (17%), Positives = 119/341 (34%), Gaps = 24/341 (7%) Query: 14 ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73 + G+ YY +G G +R P + F+ + A + + + Sbjct: 11 KVNAKGRTYYYAWRG-GPALR-GEPGSAEFMASLQEA---------NDSRVIPDASKFRA 59 Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT-----TKHIRSGVESRKH 128 +I+ Y+ S + LA +++ ++ + D+I +K GD + IR Sbjct: 60 VITAYKSSHDYQKLADSTKRNWNGWLDRIGKKFGDLSIAQFDLPQKIRPVIRKWRGEFAD 119 Query: 129 TPSSAIQFLTSMRVLFKWAVR-QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 P +A + + + +AV ++ NPC +++ + WT +D+ + K+ S Sbjct: 120 KPRTADYGMQVLSRVLSYAVDPLGKISQNPCEGIKQLYKNDRAAIIWTDQDIARLKTKCS 179 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--TIITVELPDGFMKLL 245 + A + ++GLR D R H+ +N + T K+ + L LL Sbjct: 180 P--EVAWAVDLAAHTGLRAGDLLRLSWSHITDNAIILPTGKSRHTKEAVIPLYAELRALL 237 Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSATISADAGA 302 P N K F F +A + + H R +AT AG Sbjct: 238 QTIPRRSPIVLTNTRKAPWTVNGFGSSFSDCREEAKLGDRDLHFHDFRGTAATKFYIAGL 297 Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343 + + GW+ + + ++I Sbjct: 298 SECVIAEIMGWEEETVRNIIRRYVSKTAAIEATIKQIDEAR 338 >gi|254501363|ref|ZP_05113514.1| site-specific recombinase, phage integrase family protein [Labrenzia alexandrii DFL-11] gi|222437434|gb|EEE44113.1| site-specific recombinase, phage integrase family protein [Labrenzia alexandrii DFL-11] Length = 362 Score = 183 bits (465), Expect = 3e-44, Method: Composition-based stats. Identities = 61/340 (17%), Positives = 121/340 (35%), Gaps = 26/340 (7%) Query: 20 KIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYR 79 + YY R + R P F+ + +A+ + TL LI E++ Sbjct: 21 RTYYYHRATNTRLQ--GEPGSPEFLSSIAAAVEQCRQR---------DAGTLGGLIREFQ 69 Query: 80 KSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-----TPSSAI 134 ++A W LA ++ + F + G Y + K R V P A Sbjct: 70 QTAKWRRLAETTQNEYRRIFKFWEDQYGTCPYPALEDKAFRRAVIKWHDAFSEAKPREAD 129 Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194 +T + + WA R + N ER + + W E ++ F + S + +L Sbjct: 130 NRVTVLARVLSWATRDGPLKRNVLDGFERAYQSDRSDKIWLPEHVEAFMAVASP--EMKL 187 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT------GTIITVELPDGFMKLLAMT 248 A L++G R D + + S++ K+ G ++T++ + L Sbjct: 188 AMVLALHTGQRRGDLLQLNWNNYDGERISLRQGKSRRGKIEGRLVTIKCTRALKETLDHL 247 Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHEL 307 P + F++ ++ +AG+ + H +R + T+ AG E+ Sbjct: 248 PKRSTLILTTKTGKAFKKRYFALQWEKTCREAGIEDLHFHDIRGTTVTMLFQAGCNLGEI 307 Query: 308 MATYGWKTVDQAETYTKGADR-IRLGIKNSRRISSVVDSD 346 ++ G + K R + + +V+++D Sbjct: 308 VSITGHCLRRAQDILDKYLARTSTMADNAIAKFENVLETD 347 >gi|17987295|ref|NP_539929.1| integrase/recombinase [Brucella melitensis bv. 1 str. 16M] gi|17982974|gb|AAL52193.1| integrase/recombinase [Brucella melitensis bv. 1 str. 16M] Length = 336 Score = 183 bits (465), Expect = 3e-44, Method: Composition-based stats. Identities = 61/341 (17%), Positives = 118/341 (34%), Gaps = 24/341 (7%) Query: 14 ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73 + G+ YY +G G +R P + F+ + A + + + Sbjct: 6 KVNAKGRTYYYAWRG-GPALR-GEPGSAEFMASLQEA---------NDSRVIPDASKFRA 54 Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT-----TKHIRSGVESRKH 128 +I+ Y+ S + LA +++ ++ + D+I +K GD + IR Sbjct: 55 VITAYKSSHDYQKLADSTKRNWNGWLDRIGKKFGDLSITQFDLPQKIRPVIRKWRGEFAD 114 Query: 129 TPSSAIQFLTSMRVLFKWAVR-QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 P +A + + + +AV ++ NPC +++ + WT +D+ + K+ S Sbjct: 115 KPRTADYGMQVLSRVLSYAVDPLGKISQNPCEGIKQLYKNDRAAIIWTDQDIARLKTKCS 174 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--TIITVELPDGFMKLL 245 + A + ++GLR D R H+ +N + T K+ + L LL Sbjct: 175 P--EVAWAVDLAAHTGLRAGDLLRLSWSHITDNAIILPTGKSRHTKEAVIPLYAELRALL 232 Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISADAGA 302 P N K F F +A + H R +AT AG Sbjct: 233 QTIPRRSPIVLTNTRKAPWTVNGFGSSFSDCREEAKLGDRDLYFHDFRGTAATKFYIAGL 292 Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343 + + GW+ + + ++I Sbjct: 293 SERVIAEIMGWEEETVRNIIRRYVSKTAAIEATIKQIDEAR 333 >gi|254704264|ref|ZP_05166092.1| Phage integrase [Brucella suis bv. 3 str. 686] gi|261754933|ref|ZP_05998642.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686] gi|261744686|gb|EEY32612.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686] Length = 341 Score = 183 bits (464), Expect = 4e-44, Method: Composition-based stats. Identities = 62/341 (18%), Positives = 119/341 (34%), Gaps = 24/341 (7%) Query: 14 ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73 + G+ YY +G G +R P + F+ + A + + + Sbjct: 11 KVNAKGRTYYYAWRG-GPALR-GEPGSAEFMASLQEA---------NDSRVIPDASKFRA 59 Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT-----TKHIRSGVESRKH 128 +I+ Y+ S + LA +++ ++ + D+I +K GD + IR Sbjct: 60 VITAYKSSHDYQKLADSTKRNWNGWLDRIGKKFGDLSIAQFDLPQKIRPVIRKWRGEFAD 119 Query: 129 TPSSAIQFLTSMRVLFKWAVR-QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 P +A + + + +AV ++ NPC +++ + WT +D+ + K+ S Sbjct: 120 KPRTADYGMQVLSRVLSYAVDPLGKISQNPCEGIKQLYKNDRAAIIWTDQDIARLKTKCS 179 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--TIITVELPDGFMKLL 245 + A + ++GLR D R H+ +N + T K+ + L LL Sbjct: 180 P--EVAWAVDLAAHAGLRAGDLLRLSWSHITDNAIILPTGKSRHTKEAVIPLYAELRALL 237 Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSATISADAGA 302 P N K F F +A + + H R +AT AG Sbjct: 238 QTIPRRSPIVLTNTRKAPWTVNGFGSSFSDCREEAKLGDRDLHFHDFRGTAATKFYIAGL 297 Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343 + + GW+ + R ++I Sbjct: 298 SERVIAEIMGWEEETVRNIIRRYVSRTAAIEATIKQIDEAR 338 >gi|99081533|ref|YP_613687.1| phage integrase [Ruegeria sp. TM1040] gi|99037813|gb|ABF64425.1| hypothetical protein TM1040_1692 [Ruegeria sp. TM1040] Length = 348 Score = 182 bits (461), Expect = 9e-44, Method: Composition-based stats. Identities = 76/350 (21%), Positives = 134/350 (38%), Gaps = 24/350 (6%) Query: 3 PSLRLPPFVTKERTRHGKIIYYFR-------KGHGRRIRLPYPHESTFIP-AYMSALTGS 54 P + P V K TR+ + Y R K R +L + +S + Y G Sbjct: 7 PRIVKPGLVWKWDTRNSIWVPYHRVNWTEGGKRKQRTTKLDWRGDSERLDMLYWQCRAGK 66 Query: 55 TPKREYINSPRKKPTTLKWLISEYRKSAHWGS-LAVNSRISFESYFDQIIRKSGDFDYRK 113 K+ T + LI+ +R+ S LA ++ S+ + I+ K+ D D R+ Sbjct: 67 HKKQTAP-----AKYTWRQLITAWREDPRVQSRLADGTKRSYSRTMEAILDKNSDKDVRR 121 Query: 114 ITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKW-AVRQEY-VAINPCLSVERPKRKTEGI 171 T + IR+ TP A ++L ++ +L+ + A + ++ + NP +E +++E Sbjct: 122 TTRQAIRTAHSKMSETPRKADKYLQTVSLLWNYGAEKLDWPLGPNPAKGIEHFGKQSE-Y 180 Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231 PW + + + K R A E +L +G R + + H S+ +K+ Sbjct: 181 EPWPEWMVDKLK---DAPEHVRTAAELILGTGQRPNAAIHMKFAHFDGEWMSVLDEKSDE 237 Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHG 288 I V P + ++ P N + S F+ G HG Sbjct: 238 RIDVYCPPALREFISRAPRNGAYVLAKNLTEPRGYWSISSSFRTWRDALGPEAKKYVLHG 297 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRR 338 +RK S A+AG + E+ A ++ + Y A R L R Sbjct: 298 LRKLSIIRLAEAGCSDAEIQAVTN-QSAEMVAYYRSRASRKALSRAAQER 346 >gi|220921956|ref|YP_002497257.1| integrase family protein [Methylobacterium nodulans ORS 2060] gi|219946562|gb|ACL56954.1| integrase family protein [Methylobacterium nodulans ORS 2060] Length = 353 Score = 181 bits (459), Expect = 1e-43, Method: Composition-based stats. Identities = 78/362 (21%), Positives = 129/362 (35%), Gaps = 34/362 (9%) Query: 4 SLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS 63 +R+P K G Y R R + A + + PK Sbjct: 3 KVRVPG--VKVYVSKGITYAYDRASGERLTPPHEIGTPGWWTALQAIRAKAKPK------ 54 Query: 64 PRKKPTTLKWLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG 122 +++P T L+ YR S + LA +R +++ D + K D T + Sbjct: 55 VKEEPGTWGALVISYRSSPRFLNDLAPRTRADYQTVLDHL-GKLHDRPISAWTRGFVAGL 113 Query: 123 VES--RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE---RPKRKTEGIRPWTKE 177 + +K A L+ + V+F + +E + NP V+ RPK RPW+ E Sbjct: 114 RDEAQKKKGRRFANYVLSVVSVVFAHGIEREMASTNPVRDVKKLRRPKGAPRANRPWSPE 173 Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQKTGTIITV 235 + + S + R A G R ++ A S + K+G + V Sbjct: 174 EWDAVVAAASP--ELRAAIMLGGVLGYRQGEALSAKRDSWNRAAGTLSRISAKSGKPVKV 231 Query: 236 ELPDGFMKLLAMTPI-GKETFFINNDKQKMNATQF-SIWFKAKATKAGVNK-----SAHG 288 + P+ + LA P T +N+ Q F +F+ T K + HG Sbjct: 232 QAPEIVAQALAALPSHSATTLLVNSRGQPWKEDGFRGSFFRLIRTLEAEGKIADGLTFHG 291 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD--------RIRLGIKNSRRIS 340 +R +AT G + G +T A Y++ AD +RL +N +R Sbjct: 292 LRHTAATQMRQLGFDTRTIADMLGQETEGMAAHYSREADLEPKLRGVVVRLDQENRKRTG 351 Query: 341 SV 342 SV Sbjct: 352 SV 353 >gi|126739278|ref|ZP_01754972.1| Integrase [Roseobacter sp. SK209-2-6] gi|126719895|gb|EBA16603.1| Integrase [Roseobacter sp. SK209-2-6] Length = 339 Score = 181 bits (459), Expect = 2e-43, Method: Composition-based stats. Identities = 67/337 (19%), Positives = 117/337 (34%), Gaps = 27/337 (8%) Query: 18 HGKIIYYFRK-GHGRRIRLP----YPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72 H +Y RK +G+ I L + F Y ++G + T+ Sbjct: 12 HSSGRWYVRKCVNGKMIYLGRITAKEDTAEFDHQYWEIVSGKRAE---------AKTSWT 62 Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132 LI+ R++ W + + R E F + K G D ++T I +E KH Sbjct: 63 ALIAAMRETDKWANFSPRYRKDLEPVFTYLTEKIGKADVVRLTQADIYDAMEKNKHRVRF 122 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVER---PKRKTEGIRPWTKEDMQQFKSFWSEG 189 A T++ +L K A+R+ + NP + +E PK + + PWT +++ + Sbjct: 123 ANYIPTAISMLSKLAIRKRWRKDNPAIDIEPLKVPKARKKPHVPWTDWAVERLRD--EGE 180 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT- 248 S P L FE + S R D ++ KTG + + + L Sbjct: 181 SLPVLIFEIGVGSVQRPGDWVDFQWGDYDGETLKLRQNKTGKPLLLPCTEALKTALDRAK 240 Query: 249 ------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAG 301 P D M+ + + + G+ H +R A AG Sbjct: 241 AELGFVPHPLRHILTRADGSAMDYHAMARVMVRERKRLGLMAFDQHALRYRGVMELAWAG 300 Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRR 338 T E+ + G + Y A +I + + + Sbjct: 301 CTDDEIASFSGHTSKAMIVKYAGEARQIMRARQAAAK 337 >gi|254701722|ref|ZP_05163550.1| Phage integrase [Brucella suis bv. 5 str. 513] gi|261752275|ref|ZP_05995984.1| conserved hypothetical protein [Brucella suis bv. 5 str. 513] gi|261742028|gb|EEY29954.1| conserved hypothetical protein [Brucella suis bv. 5 str. 513] Length = 341 Score = 180 bits (456), Expect = 3e-43, Method: Composition-based stats. Identities = 61/341 (17%), Positives = 118/341 (34%), Gaps = 24/341 (7%) Query: 14 ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73 + G+ YY +G G +R P + F+ + A + + + Sbjct: 11 KVNAKGRTYYYAWRG-GPALR-GEPGSAEFMASLQEA---------NDSRVIPDASKFRA 59 Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT-----TKHIRSGVESRKH 128 +I+ Y+ S + LA +++ ++ + D+I +K GD + IR Sbjct: 60 VITAYKSSHDYQKLADSTKRNWNGWLDRIGKKFGDLSIAQFDLPQKIRPVIRKWRGEFAD 119 Query: 129 TPSSAIQFLTSMRVLFKWAVR-QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 P +A + + + +AV ++ NPC +++ + T +D+ + K+ S Sbjct: 120 KPRTADYGMQVLSRVLSYAVDPLGKISQNPCEGIKQLYKNDRAAIIRTDQDIARLKTKCS 179 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--TIITVELPDGFMKLL 245 + A + ++GLR D R H+ +N + T K+ + L LL Sbjct: 180 P--EVAWAVDLAAHTGLRAGDLLRLSWSHITDNAIILPTGKSRHTKEAVIPLYAELRALL 237 Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSATISADAGA 302 P N K F F +A + + H R +AT AG Sbjct: 238 QTIPRRSPIVLTNTRKAPWTVNGFGSSFSDCREEAKLGDRDLHFHDFRGTAATKFYIAGL 297 Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343 + + GW+ + R ++I Sbjct: 298 SERVIAEIMGWEEETVRNIIRRYVSRTAAIEATIKQIDEAR 338 >gi|261218687|ref|ZP_05932968.1| conserved hypothetical protein [Brucella ceti M13/05/1] gi|261321815|ref|ZP_05961012.1| conserved hypothetical protein [Brucella ceti M644/93/1] gi|260923776|gb|EEX90344.1| conserved hypothetical protein [Brucella ceti M13/05/1] gi|261294505|gb|EEX98001.1| conserved hypothetical protein [Brucella ceti M644/93/1] Length = 323 Score = 179 bits (455), Expect = 4e-43, Method: Composition-based stats. Identities = 59/331 (17%), Positives = 114/331 (34%), Gaps = 23/331 (6%) Query: 24 YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAH 83 Y+ G +R P + F+ + A + + + +I+ Y+ S Sbjct: 2 YYAWRGGPALR-GEPGSAEFMASLQEA---------NDSRVIPDASKFRAVITAYKSSHD 51 Query: 84 WGSLAVNSRISFESYFDQIIRKSGDFDYRKIT-----TKHIRSGVESRKHTPSSAIQFLT 138 + LA +++ ++ + D+I +K GD + IR P +A + Sbjct: 52 YQKLADSTKRNWNGWLDRIGKKFGDLSIAQFDLPQKIRPVIRKWRGEFADKPRTADYGMQ 111 Query: 139 SMRVLFKWAVR-QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFE 197 + + +AV ++ NPC +++ + WT +D+ + K+ S + A + Sbjct: 112 VLSRVLSYAVDPLGKISQNPCEGIKQLYKNDRAAIIWTDQDIARLKTKCSP--EVAWAVD 169 Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--TIITVELPDGFMKLLAMTPIGKETF 255 ++GLR D R H+ +N + T K+ + L LL P Sbjct: 170 LAAHTGLRAGDLLRLSWSHITDNAIILPTGKSRHTKEAVIPLYAELRALLQTIPRRSPIV 229 Query: 256 FINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSATISADAGATAHELMATYG 312 N K F F +A + + H R +AT AG + + G Sbjct: 230 LTNTRKAPWTVNGFGSSFSDCREEAKLGDRDLHFHDFRGTAATKFYIAGLSERVIAEIMG 289 Query: 313 WKTVDQAETYTKGADRIRLGIKNSRRISSVV 343 W+ + R ++I Sbjct: 290 WEEETVRNIIRRYVSRTAAIEATIKQIDEAR 320 >gi|329888682|ref|ZP_08267280.1| phage integrase family protein [Brevundimonas diminuta ATCC 11568] gi|328847238|gb|EGF96800.1| phage integrase family protein [Brevundimonas diminuta ATCC 11568] Length = 374 Score = 178 bits (452), Expect = 9e-43, Method: Composition-based stats. Identities = 62/371 (16%), Positives = 126/371 (33%), Gaps = 45/371 (12%) Query: 11 VTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70 +TK+R ++ Y++ G R+ P F+ AY +A+ + T Sbjct: 12 ITKKRADGSRVTYWYAWKGGPRLP-GSPGSPEFMAAYNAAVAERRAPK---------TDT 61 Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK------SGDFDYRKITTKHIRS--- 121 L+ L Y++S + +L ++ + + D I+ G + + + +++ Sbjct: 62 LRSLAILYKQSPEYDALGDTTKREWTRWLDVIMDDSDAPLAIGGLPFDALDDRRVKAEIL 121 Query: 122 -GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 + P A + + + W + + +A+N +++ + WT E+++ Sbjct: 122 AWRDQWADRPRKADYGIQVLSRVLSWGMDRGLLALNAAAGIKQLYTSNRADQIWTAEEIE 181 Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT--GTIITVELP 238 ++ + + ++GLR D H+ + T+K+ + L Sbjct: 182 RYAAAAKSPEVGFIVR-LACHTGLRREDLASLCWSHVGDLAIVKATKKSRGKKTAVIPLL 240 Query: 239 DGFMKLL----------------------AMTPIGKETFFINNDKQKMNATQFSIWFKAK 276 D LL P+ T N + + Sbjct: 241 DDTKALLEEIRAQQRRRHSELADSAAKKKRPAPVECLTVLSNTRGKPWSLDGLEHQVVDA 300 Query: 277 ATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336 AG+NK H R AT AG TA E+ GW+ DR + ++ + Sbjct: 301 KAAAGINKHLHDARGTFATRLRRAGLTAAEIADILGWEEDRVQRLLAVYVDRDSIVMEIA 360 Query: 337 RRISSVVDSDD 347 RI + D Sbjct: 361 NRIRRNETATD 371 >gi|306845920|ref|ZP_07478487.1| integrase family protein [Brucella sp. BO1] gi|306273555|gb|EFM55400.1| integrase family protein [Brucella sp. BO1] Length = 305 Score = 178 bits (451), Expect = 1e-42, Method: Composition-based stats. Identities = 53/286 (18%), Positives = 99/286 (34%), Gaps = 15/286 (5%) Query: 38 PHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFES 97 P F+ Y+ KP TL WL+SEY SA + L+VN++ +E Sbjct: 5 PDTPAFMHEYLRL-------TRDRKIAEAKPKTLAWLVSEYLASADYQKLSVNTKRDYER 57 Query: 98 YFDQIIRKSGDFDYRKITTKHIR----SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYV 153 I K G + + + R + + TP SA +T + + WA +E + Sbjct: 58 MTGVISIKFGTLPVQALEARGARRLFMDWRDEMRATPRSADLHITVLARIMSWAKNREII 117 Query: 154 AINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAG 213 NP + + W + +F + + L++ R D Sbjct: 118 IRNPLEKAGKLHKSNRKDIIWMPSQLSKFLNEAPAHLSD--VVKMALWTMQRKGDVLGMP 175 Query: 214 VQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET-FFINNDKQKMNATQFSIW 272 +++ I KTG + ++ D + +L T N+ ++ F Sbjct: 176 TIAYSDDLLWITQGKTGARVRIKPADEILPILRTAKEKNRTRVLANSFGDMWTSSGFDSS 235 Query: 273 FKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVD 317 FK + + + + H +R + T + G + G + Sbjct: 236 FKKEMNRLEIKGVTFHDLRGTAITYAYANGMDVERIAEISGHSKSE 281 >gi|260577125|ref|ZP_05845103.1| integrase family protein [Rhodobacter sp. SW2] gi|259020703|gb|EEW24021.1| integrase family protein [Rhodobacter sp. SW2] Length = 358 Score = 178 bits (451), Expect = 1e-42, Method: Composition-based stats. Identities = 78/358 (21%), Positives = 129/358 (36%), Gaps = 38/358 (10%) Query: 4 SLRLPPFVTKERTRHGKIIYYFRKGHG-----RRIRLPY-PHESTFIPAYMSALTGSTPK 57 + LP V + G+ +Y+++G G RIRLP P F A A P Sbjct: 3 KISLPRHVHHVIS-GGRDYFYYQEGRGTPHQGERIRLPDKPQTPEFWNAVRQAQGTFGPT 61 Query: 58 REYINSPRKKPTTLKWLISEYRKSAHW----GSLAVNSRISFESYFDQIIRKSGDFDYRK 113 T+ LI Y W L+ ++ + + GD R Sbjct: 62 P---------TDTVGALIDAY--EGAWPTLQRKLSKGTQEQYRRNLKPSRKAWGDLPARD 110 Query: 114 ITTKHIRSGVES-RKHTPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGI 171 + KH+ + + P +A L +++ L +WA + +A +P V R K G Sbjct: 111 LRPKHVDALIRKIGAERPGAANNVLDALKALCRWANGPVDLLAHDPTKGVHRF-EKGAGH 169 Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231 PWT+ + F G R + Y+G R SD R + + FS++ +KTG Sbjct: 170 EPWTEAQL-AFAEQTFTG-PLRRYYFLSRYTGQRISDVVRLNPGDVDDGGFSLRQKKTGV 227 Query: 232 IITVELPDGFMKLLAMTPIGKETFFIN----NDKQKMNATQFSIWFKAKATK----AGVN 283 + +A + + + + + Q F A+ K AG Sbjct: 228 KPWCPIFAELETEMATWERRLGPYLLQEIGKSAGKPFSTNQMWKAFDAERAKHPILAG-- 285 Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341 HG+R + G +A ++ G +V+ E Y + +DR G R I Sbjct: 286 AVPHGLRANAVIRLRVGGYSALQISDMVG-MSVEMVEHYCRHSDRKASGQAVLREIRE 342 >gi|222149050|ref|YP_002550007.1| phage-related integrase [Agrobacterium vitis S4] gi|221736035|gb|ACM36998.1| phage-related integrase [Agrobacterium vitis S4] Length = 311 Score = 177 bits (449), Expect = 2e-42, Method: Composition-based stats. Identities = 57/295 (19%), Positives = 105/295 (35%), Gaps = 21/295 (7%) Query: 38 PHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFES 97 P F ++ +T+ LI EYR++A + +L+ ++R +E Sbjct: 5 PGTKAFTQEFLRL--------TRDRQKPAIASTIGSLIDEYRQTARYKALSPSTRRDYER 56 Query: 98 YFDQIIRKSGDFDYRKITTKHIRS----GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYV 153 F I + GD + + R + K +P SA + + LF WA EY+ Sbjct: 57 IFGAIRLEYGDCPLAAVEARGSRRGFLSWRDKMKDSPRSADMHIALLSRLFVWAKDSEYI 116 Query: 154 AINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAG 213 NP VER + W+ + + + S R + L++ R +D Sbjct: 117 MRNPLERVERLHEGSRKDIIWSSNQIDKLLAEASP--HIRDVAKVALWTMQRQADILTMP 174 Query: 214 VQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTP-IGKETFFINNDKQKMNATQFSIW 272 SIK KTG + V M +L ++ +N+ Q ++ F Sbjct: 175 TLAFDGERLSIKQGKTGARVRVIAAPDLMPMLRKAKEAQRQRVLVNSFGQNWTSSGFRAS 234 Query: 273 FKAKATKAGVNK-SAHGVRKFSATISADAGATAHE-----LMATYGWKTVDQAET 321 ++ + + G+ + H +R + T + H+ + G D Sbjct: 235 WRKEMARLGIKGVTFHDLRGTAITFAYAHLDRPHDEKIKLISEISGHSREDAESI 289 >gi|220926098|ref|YP_002501400.1| integrase family protein [Methylobacterium nodulans ORS 2060] gi|219950705|gb|ACL61097.1| integrase family protein [Methylobacterium nodulans ORS 2060] Length = 344 Score = 175 bits (444), Expect = 8e-42, Method: Composition-based stats. Identities = 58/331 (17%), Positives = 112/331 (33%), Gaps = 19/331 (5%) Query: 23 YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSA 82 YY+ + G R+ + P F+ ++ +A + T+ WLI +Y S Sbjct: 23 YYYHRPTGIRL-VGEPGTPEFLASFQAA--------AKSMTQTHGAGTVAWLIRQYCDSP 73 Query: 83 HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR----SGVESRKHT-PSSAIQFL 137 W LA +++ + K G ++ R + T P +A L Sbjct: 74 QWKKLAASTQEIGRLNLKAVEDKWGATPLEHAQSQRTRPLYLRWHDKMAATHPRAADAKL 133 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFE 197 +++ + W V + + NP + ER + + W E + F S + L Sbjct: 134 SALARVLSWGVDRGLITNNPVATFERAYKADRAEKIWLPEHVAAFNKAASPELRLALLLA 193 Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFI 257 ++G R D + S++ K+G + + L P T Sbjct: 194 L--HTGQRQGDLLQLPWSGYDGTAVSLRQGKSGRKVWIPATRALRAELDAAPRRAVTILT 251 Query: 258 NNDKQKMNATQF-SIWFKA-KATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKT 315 D + F W +A +A++ + H +R + T+ ++ G+T E+ G Sbjct: 252 KPDGESWTKDAFTWAWGRAFEASEIKDDLHFHDLRGTAVTMLSEVGSTPQEIATITGHTV 311 Query: 316 VDQAETYTKGADRIR-LGIKNSRRISSVVDS 345 R R L ++ + Sbjct: 312 ASVNRILETYLARTRTLAESAIIKLDQHRRN 342 >gi|159184306|ref|NP_353464.2| phage-related integrase [Agrobacterium tumefaciens str. C58] gi|159139630|gb|AAK86249.2| phage-related integrase [Agrobacterium tumefaciens str. C58] Length = 342 Score = 175 bits (444), Expect = 8e-42, Method: Composition-based stats. Identities = 56/338 (16%), Positives = 122/338 (36%), Gaps = 25/338 (7%) Query: 15 RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74 G + YY +G G R+ +P + F+ +Y A+ + + + Sbjct: 12 VKAKGNVYYYAWRG-GPRLD-GHPGTAAFMASYNEAIANRMEP---------ESGRFRSI 60 Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITT-----KHIRSGVESRKHT 129 I+ Y+ + + LA +++ + + D+I G+ + IR T Sbjct: 61 ITHYKAT-EFKKLADSTKRVWSPWIDRISEHFGNLSIAQFNRTDKIRPRIRQWRGQYSDT 119 Query: 130 PSSAIQFLTSMRVLFKWAVR-QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 P +A + + + V ++ NP ++ WT D+ Q K+ S+ Sbjct: 120 PRAADTGMQVLSRILSHGVDPMGKLSANPAEGIKHLYSSDRSEIIWTDADIAQVKAECSD 179 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT--GTIITVELPDGFMKLLA 246 + + + ++GLR SD + H+ + I T K+ + D ++L Sbjct: 180 --EVKWVIDLAAHTGLRVSDLLKLSWSHVGPDAIIISTGKSRHKREAIIPRYDALNEILE 237 Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSATISADAGAT 303 P ++ K+ + + F KA + + H +R +AT +AG + Sbjct: 238 RIPKRSPVILTSSKKKPWKPSGLNTMFWRAKEKAKMLERDLHFHDLRGTAATKFYNAGLS 297 Query: 304 AHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341 + W+ + + R +++ ++S Sbjct: 298 VRVIAEIMAWEEETVGKIIRRYVGRNSATLEHINMLNS 335 >gi|302346034|ref|YP_003814387.1| phage integrase, N-terminal SAM domain protein [Prevotella melaninogenica ATCC 25845] gi|302149123|gb|ADK95385.1| phage integrase, N-terminal SAM domain protein [Prevotella melaninogenica ATCC 25845] Length = 314 Score = 175 bits (444), Expect = 9e-42, Method: Composition-based stats. Identities = 55/276 (19%), Positives = 107/276 (38%), Gaps = 23/276 (8%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQII-----RKSGDFDYRKITTKHIRSGVES 125 K ++S YR+ +VN+ ++ D++ + D + +H + + Sbjct: 8 KDIVSRYRRYLKLEKGYSVNTLDAYMRDVDKLFRYLAVEQVDVLDVKLEDLEHFAAFISD 67 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 P S + L+ +R +++ V Y+ ++P +E PK+ + ++ + Sbjct: 68 LGIGPRSLARILSGVRQFYRFLVIDGYLEVDPTELLESPKQPDHLPEVLSTAEVDLLEQA 127 Query: 186 WS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-IITVELPDG 240 EG + R E L GLR S+ + +L I+ G+ V + Sbjct: 128 IDLSKWEGHRNRAIIEVLFSCGLRVSELTNLKLSNLYIEEQYIRVMGKGSKERLVPISPR 187 Query: 241 FMK----------LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHG 288 + ++ + P ++ F+N Q + T I K A +AG+ K S H Sbjct: 188 ALDELSYWFADRNVMKIKPGEEDYVFLNRRGQHLTRTMILIMIKRYAVEAGIKKTISPHT 247 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 +R AT + GA + A G +++ E YT Sbjct: 248 LRHSFATSLLEGGADLRAIQAMLGHESIGTTEIYTH 283 >gi|260467239|ref|ZP_05813415.1| integrase family protein [Mesorhizobium opportunistum WSM2075] gi|319782065|ref|YP_004141541.1| integrase family protein [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|259029014|gb|EEW30314.1| integrase family protein [Mesorhizobium opportunistum WSM2075] gi|317167953|gb|ADV11491.1| integrase family protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 396 Score = 174 bits (442), Expect = 1e-41, Method: Composition-based stats. Identities = 62/369 (16%), Positives = 122/369 (33%), Gaps = 36/369 (9%) Query: 15 RTRHGKIIYYFRKGHGRRIRLPY-PHESTFIPAYMSALTGSTPKREYINSP-RKKPTTLK 72 R ++GK+ Y +R I+LP P + F AY +A G I+ P R P T Sbjct: 16 RIKNGKLTYRYRAKGMPEIQLPGKPGDPEFEVAYENATQGQHKNAVIIDLPGRALPKTFG 75 Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIR---------KSGDFDYRKITTKHIRSGV 123 + W ++ ++ + + + +R+ + Sbjct: 76 HAARRLETTMEWLDFDEATQRKNARLIERFLSLKVDPAYPLTWRETPVEHLDADRLRAII 135 Query: 124 ES-RKHTPSSAIQFLTSMRVLFKWAVR-QEYVA--INPCLSVERPKRKTEGIRPWTKEDM 179 E + + A L +++ L A ++++ +P LS+ K+ W Sbjct: 136 EGIFRTNRTVAKHMLVAIKKLVWVATDIEKWIKPQDDPSLSIRVRVPKSTKNPAWPIAMR 195 Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-------------IKT 226 + F+ G+ R + + G R D L + Sbjct: 196 ETFEERHPVGTAARTCYALGFWLGNRRGDIAALAWDDLLTEEIELFDGSLVLIEAFDFRQ 255 Query: 227 QKT-----GTIITVELPDGFMKLLAMTPIGK-ETFFINNDKQKMNATQFSIWFKAKATKA 280 +K G + + + D L K T N + S + +A Sbjct: 256 KKNRNRHGGREMFIPVVDKLAAALDPLDRSKGGTVLKNGYGNPFSEKSLSGMMQHWTRQA 315 Query: 281 GVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRR 338 G+ + HG+R+ T A+ A +M G ++ + Y + A++ R+ + +R Sbjct: 316 GIPSGYTLHGLRRTFGTYLAECNIQARAIMEAMGHSSMAVTDDYVREANKKRIAVDIARA 375 Query: 339 ISSVVDSDD 347 I+ D Sbjct: 376 INEREAKRD 384 >gi|260425689|ref|ZP_05779669.1| phage integrase family protein [Citreicella sp. SE45] gi|260423629|gb|EEX16879.1| phage integrase family protein [Citreicella sp. SE45] Length = 268 Score = 173 bits (439), Expect = 3e-41, Method: Composition-based stats. Identities = 50/260 (19%), Positives = 103/260 (39%), Gaps = 5/260 (1%) Query: 91 SRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQ 150 +R + E F + +G D K+ T H+ ++ P+ A + + ++ VL K+AV+ Sbjct: 10 TRRNHERNFRYLRETAGKIDPAKLRTVHVYEMRDALADKPTDANRKIDTLLVLMKYAVQI 69 Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSC 210 ++ NP ++R + +PW + ++ F++ + L FE LL +G R D Sbjct: 70 GWIDRNPAQDIQRLSPTGKKRKPWPADLIEAFRAEAE--GRALLLFEMLLGTGQRIDDVL 127 Query: 211 RAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMN-ATQF 269 + L ++ F++ KT + + L D +LA D Q+++ + Sbjct: 128 KLRWSDLDDDGFTLVQGKTKAELYIPLTDRLRAVLAAEKKRGLFIVCREDGQRISYPSAH 187 Query: 270 SIWFKAKATKAGVNKSAHGVRKFSATISAD-AGATAHELMATYGWKTVDQAETYTKGADR 328 + + H +R +A+ A G T+ + A G + Y A + Sbjct: 188 KDIMTVRRKIGAEDYDIHALRYAAASEIAAIPGMTSDHVKAITGHASGAMIRLYAGAAQQ 247 Query: 329 IRLGIKNSR-RISSVVDSDD 347 + + R+ + Sbjct: 248 KARATEAQKARMDRTKPKRE 267 >gi|288803482|ref|ZP_06408914.1| integrase/recombinase XerD [Prevotella melaninogenica D18] gi|288334092|gb|EFC72535.1| integrase/recombinase XerD [Prevotella melaninogenica D18] Length = 314 Score = 172 bits (437), Expect = 6e-41, Method: Composition-based stats. Identities = 53/276 (19%), Positives = 106/276 (38%), Gaps = 23/276 (8%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQII-----RKSGDFDYRKITTKHIRSGVES 125 K ++S YR+ + N+ ++ D++ + D + ++ + + Sbjct: 8 KDIVSRYRRYLKLEKGYSANTLDAYMRDVDKLFRYLAVEQVDVLDVKLEDLEYFAAFISD 67 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 P S + L+ +R +++ V Y+ ++P +E PK+ + ++ + Sbjct: 68 LGIGPRSLARILSGVRQFYRFLVIDGYLEVDPTELLESPKQPDHLPEVLSTAEVDLLEQA 127 Query: 186 WS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-IITVELPDG 240 EG + R E L GLR S+ + +L I+ G+ V + Sbjct: 128 IDLSKWEGHRNRAIIEVLFSCGLRVSELTNLKLSNLYIEEQYIRVMGKGSKERLVPISPR 187 Query: 241 FMK----------LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHG 288 + ++ + P ++ F+N Q + T I K A +AG+ K S H Sbjct: 188 ALDELNYWFADRNVMKIKPGEEDYVFLNRRGQHLTRTMILIMIKRYAVEAGIKKTISPHT 247 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 +R AT + GA + A G +++ E YT Sbjct: 248 LRHSFATSLLEGGADLRAIQAMLGHESIGTTEIYTH 283 >gi|222148689|ref|YP_002549646.1| phage-related integrase [Agrobacterium vitis S4] gi|221735675|gb|ACM36638.1| phage-related integrase [Agrobacterium vitis S4] Length = 346 Score = 170 bits (432), Expect = 2e-40, Method: Composition-based stats. Identities = 60/308 (19%), Positives = 112/308 (36%), Gaps = 26/308 (8%) Query: 23 YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSA 82 YY+ G R++ Y F + A + TL ++IS Y++ Sbjct: 23 YYYAWKGGPRLKEKY-GTPAFAEEFRQA---------TRDRSAPDADTLAYVISLYKR-M 71 Query: 83 HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS----GVESRKHTPSSAIQFLT 138 L ++R ++ Y I + GD D R + R+ ++ TP +A + Sbjct: 72 ELPRLKPSTRSTYLPYLKNIEIEFGDMDIRAVEATGSRAVFLEWRDTMATTPRAADIAWS 131 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP-WTKEDMQQFKSFWSEGSQPRLAFE 197 ++ + + V E + NPC + R WT D+ +F++ S A Sbjct: 132 ILQRIMAFGVHMEKLKRNPCTNAGRLAESGTRREIIWTPPDLSRFRAVASRQLAD--ALL 189 Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-------ELPDGFMKLLAMTPI 250 +++G R D + +K KTG + + ++ D + Sbjct: 190 LAIWTGQRQGDLLKLQWSAYDGKHIRLKQGKTGRRVAILVSGTLGKMLDRLKAENEARKV 249 Query: 251 GKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMA 309 T N + ++ F + A KAG+ + H +R T++ AGA+ ++ Sbjct: 250 QSLTILTNQRGRTWTSSGFKTSWGKAAKKAGITGLTFHDLRGTFITMARRAGASIEDIAK 309 Query: 310 TYGWKTVD 317 G T D Sbjct: 310 ASGHTTKD 317 >gi|302879928|ref|YP_003848492.1| tyrosine recombinase XerD [Gallionella capsiferriformans ES-2] gi|302582717|gb|ADL56728.1| tyrosine recombinase XerD [Gallionella capsiferriformans ES-2] Length = 305 Score = 170 bits (430), Expect = 4e-40, Method: Composition-based stats. Identities = 64/290 (22%), Positives = 117/290 (40%), Gaps = 28/290 (9%) Query: 74 LISEYRKSAHWGS--LAVNSRISFESYFDQIIRKSGDFDYRKITT---KHIRSGVES--- 125 L+ E+ S W L+ N+ S+ ++ + + + ++ + Sbjct: 6 LLDEFADSL-WLEDGLSRNTLDSYRRDLNKFSDWLRNQRGQDLLQTTHADLQGYIADLFI 64 Query: 126 -RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 +K PSSA + L+S++ LF++ +RQ +AI+P L ++ PK + T++D++Q + Sbjct: 65 VQKAKPSSAGRNLSSLKRLFRYLLRQGKIAIDPTLKIDTPKLPRNLPQSLTEQDVEQLLA 124 Query: 185 FWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVEL-- 237 G + R FE L +GLR S+ G+ L ++ ++ G V L Sbjct: 125 APDIETSLGLRDRTMFEVLYATGLRVSELVSLGIGQLDMDMGVVRVAGKGNKERLVPLGE 184 Query: 238 --PDGFMKLLA------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAH 287 D L + + F+ M F K A + G++K S H Sbjct: 185 VALDWLQSYLDDSRGVLLAGRISDDLFVTARGSGMTRQMFWYLIKKHAKQGGLDKPLSPH 244 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 +R AT + GA + G + + YT A R RL +++ Sbjct: 245 TLRHAFATHLLNHGADLRVVQMLLGHADISTTQIYTHVA-RERLKQLHAK 293 >gi|261317605|ref|ZP_05956802.1| conserved hypothetical protein [Brucella pinnipedialis B2/94] gi|265988639|ref|ZP_06101196.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1] gi|261296828|gb|EEY00325.1| conserved hypothetical protein [Brucella pinnipedialis B2/94] gi|264660836|gb|EEZ31097.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1] Length = 304 Score = 169 bits (429), Expect = 4e-40, Method: Composition-based stats. Identities = 53/284 (18%), Positives = 101/284 (35%), Gaps = 13/284 (4%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT-----TKHIRSGVES 125 + +I+ Y+ S + LA +++ ++ + D+I +K GD + IR Sbjct: 20 FRAVITAYKSSHDYQKLADSTKRNWNGWLDRIGKKFGDLSIAQFDLPQKIRPVIRKWRGE 79 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVR-QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 P +A + + + +AV ++ NPC +++ + WT +D+ + K+ Sbjct: 80 FADKPRTADYGMQVLSRVLSYAVDPLGKISQNPCEGIKQLYKNDRAAIIWTDQDIARLKT 139 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--TIITVELPDGFM 242 S + A + ++GLR D R H+ +N + T K+ + L Sbjct: 140 KCSP--EVAWAVDLAAHTGLRAGDLLRLSWSHITDNAIILPTGKSRHTKEAVIPLYAELR 197 Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSATISAD 299 LL P N K F F +A + + H R +AT Sbjct: 198 ALLQTIPRRSPIVLTNTRKAPWTVNGFGSSFSDCREEAKLGDRDLHFHDFRGTAATKFYI 257 Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343 AG + + GW+ + R ++I Sbjct: 258 AGLSERVIAEIMGWEEETVRNIIRRYVSRTAAIEATIKQIDEAR 301 >gi|254714058|ref|ZP_05175869.1| Phage integrase [Brucella ceti M644/93/1] gi|254716885|ref|ZP_05178696.1| Phage integrase [Brucella ceti M13/05/1] Length = 303 Score = 169 bits (429), Expect = 4e-40, Method: Composition-based stats. Identities = 53/284 (18%), Positives = 101/284 (35%), Gaps = 13/284 (4%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT-----TKHIRSGVES 125 + +I+ Y+ S + LA +++ ++ + D+I +K GD + IR Sbjct: 19 FRAVITAYKSSHDYQKLADSTKRNWNGWLDRIGKKFGDLSIAQFDLPQKIRPVIRKWRGE 78 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVR-QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 P +A + + + +AV ++ NPC +++ + WT +D+ + K+ Sbjct: 79 FADKPRTADYGMQVLSRVLSYAVDPLGKISQNPCEGIKQLYKNDRAAIIWTDQDIARLKT 138 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--TIITVELPDGFM 242 S + A + ++GLR D R H+ +N + T K+ + L Sbjct: 139 KCSP--EVAWAVDLAAHTGLRAGDLLRLSWSHITDNAIILPTGKSRHTKEAVIPLYAELR 196 Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSATISAD 299 LL P N K F F +A + + H R +AT Sbjct: 197 ALLQTIPRRSPIVLTNTRKAPWTVNGFGSSFSDCREEAKLGDRDLHFHDFRGTAATKFYI 256 Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343 AG + + GW+ + R ++I Sbjct: 257 AGLSERVIAEIMGWEEETVRNIIRRYVSRTAAIEATIKQIDEAR 300 >gi|326538700|gb|ADZ86915.1| phage-related integrase [Brucella melitensis M5-90] Length = 303 Score = 169 bits (427), Expect = 7e-40, Method: Composition-based stats. Identities = 52/284 (18%), Positives = 101/284 (35%), Gaps = 13/284 (4%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT-----TKHIRSGVES 125 + +I+ Y+ S + LA +++ ++ + D+I +K GD + IR Sbjct: 19 FRAVITAYKSSHDYQKLADSTKRNWNGWLDRIGKKFGDLSIAQFDLPQKIRPVIRKWRGE 78 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVR-QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 P +A + + + +AV ++ NPC +++ + WT +D+ + K+ Sbjct: 79 FADKPRTADYGMQVLSRVLSYAVDPLGKISQNPCEGIKQLYKNDRAAIIWTDQDIARLKT 138 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--TIITVELPDGFM 242 S + A + ++GLR D R H+ +N + T K+ + L Sbjct: 139 KCSP--EVAWAVDLAAHTGLRAGDLLRLSWSHITDNAIILPTGKSRHTKEAVIPLYAELR 196 Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSATISAD 299 LL P N K F F +A + + H R +AT Sbjct: 197 ALLQTIPRRSPIVLTNTRKAPWTVNGFGSSFSDCREEAKLGDRDLHFHDFRGTAATKFYI 256 Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343 AG + + GW+ + + ++I Sbjct: 257 AGLSERVIAEIMGWEEETVRNIIRRYVSKTAAIEATIKQIDEAR 300 >gi|326803729|ref|YP_004321547.1| tyrosine recombinase XerD [Aerococcus urinae ACS-120-V-Col10a] gi|326651687|gb|AEA01870.1| tyrosine recombinase XerD [Aerococcus urinae ACS-120-V-Col10a] Length = 299 Score = 168 bits (426), Expect = 1e-39, Method: Composition-based stats. Identities = 52/281 (18%), Positives = 110/281 (39%), Gaps = 26/281 (9%) Query: 70 TLKWLISEYRKSAH-WGSLAVNSRISFESYFDQ---IIRKSGDFDYRKITTKHIRSGVES 125 T+ LI ++ + L+ N+ ++ + +Q I+ ++G D + + + I +E+ Sbjct: 2 TINDLIEDFLIALRVEQGLSENTIKTYHNVLNQFQMILSEAGIEDIQAVKRQDIIQQLEN 61 Query: 126 RKHTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 + Q+L+++R FK+ + + NP ++ PK+K + + + E++ + Sbjct: 62 LNQKGRAVSTMSQYLSTLRHFFKYLILDSVIEENPVENISLPKKKQQLPQVLSVEEVDRL 121 Query: 183 KSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV--- 235 G + R E L SGLR S+ + ++ ++T G + Sbjct: 122 LEMPDVNSTLGLRDRSLLELLYASGLRVSELVHLKISDFHEDLGFLQTIGKGNKERIIPL 181 Query: 236 ----------ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284 L + +KLL + ++N+ + ++ K AG+ K Sbjct: 182 GEVAKDWLQTYLKESRLKLLGENDQSQGMIYLNHHGRPLSRQGVWKKLKQYIQAAGITKE 241 Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 S H +R AT + GA + G + + YT Sbjct: 242 VSPHTLRHSFATHLLENGADLRVVQELLGHADISTTQIYTH 282 >gi|300361568|ref|ZP_07057745.1| tyrosine recombinase XerD [Lactobacillus gasseri JV-V03] gi|300354187|gb|EFJ70058.1| tyrosine recombinase XerD [Lactobacillus gasseri JV-V03] Length = 302 Score = 168 bits (426), Expect = 1e-39, Method: Composition-based stats. Identities = 49/295 (16%), Positives = 113/295 (38%), Gaps = 25/295 (8%) Query: 67 KPTTLKWLISEYRK-SAHWGSLAVNSRISFESYFDQIIRKSGDFD-----YRKITTKHIR 120 + T+K + +Y + S L+ N+ IS+ + ++ + D + + Sbjct: 3 QTQTMKDNLEDYLRFSQVERGLSPNTIISYRTDLEEYLDYLQDQNETSWEVDYLVVDAFL 62 Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 + + + +S + ++S+R ++W +RQ+ + +P + ++ PK + ++E++ Sbjct: 63 AAQKDKGKATTSISRMISSLRKFYQWLLRQDIIERDPLIKIDSPKSERRLPTALSEEEVD 122 Query: 181 QFKSF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITV 235 + + G + R E L +G+R S+ + +++ I+ K V Sbjct: 123 KLLAAPDTNTPLGIRDRAMLELLYATGMRVSELINLRTGDIHSDLKIIRVLGKGSKERLV 182 Query: 236 ELPDGFMKLL----------AMTPIGKET--FFINNDKQKMNATQFSIWFKAKATKAGVN 283 + + + L + G+ T F+NN ++ K G+ Sbjct: 183 PITEVALSWLEKYQKDVRDAQVLKSGQFTDVIFLNNHGHQLTRQAVWQKIKKYCQLVGIT 242 Query: 284 K--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336 K + H +R AT + GA + G + + YT + L + N Sbjct: 243 KNVTPHTLRHTFATHLLENGADLRVVQEILGHSDITTTQIYTNLTQKHILEVYNQ 297 >gi|116629539|ref|YP_814711.1| integrase [Lactobacillus gasseri ATCC 33323] gi|238852689|ref|ZP_04643099.1| tyrosine recombinase XerD [Lactobacillus gasseri 202-4] gi|311110818|ref|ZP_07712215.1| tyrosine recombinase XerD [Lactobacillus gasseri MV-22] gi|116095121|gb|ABJ60273.1| tyrosine recombinase XerD subunit [Lactobacillus gasseri ATCC 33323] gi|238834835|gb|EEQ27062.1| tyrosine recombinase XerD [Lactobacillus gasseri 202-4] gi|311065972|gb|EFQ46312.1| tyrosine recombinase XerD [Lactobacillus gasseri MV-22] Length = 302 Score = 168 bits (425), Expect = 1e-39, Method: Composition-based stats. Identities = 49/296 (16%), Positives = 111/296 (37%), Gaps = 27/296 (9%) Query: 67 KPTTLKWLISEYRK-SAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK------ITTKHI 119 + T+K + +Y + S L+ N+ IS+ + ++ + D + + + Sbjct: 3 QTQTMKDNLEDYLRFSQVERGLSPNTIISYRTDLEEYLDYLQDQNETSWEVDYLVVDAFL 62 Query: 120 RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179 + + K T +S + ++S+R ++W +RQ+ + +P + ++ PK + ++E++ Sbjct: 63 ATQKDKGKAT-TSISRMISSLRKFYQWLLRQDIIERDPLVKIDSPKSERRLPTALSEEEV 121 Query: 180 QQFKSF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIIT 234 + + G + R E L +G+R S+ + ++ I+ K Sbjct: 122 DKLLAAPDTNTPLGIRDRAMLEVLYATGMRVSELINLRTGDIHADLKIIRVLGKGSKERL 181 Query: 235 VELPDGFMKLLAMTPIG------------KETFFINNDKQKMNATQFSIWFKAKATKAGV 282 V + + + L + F+NN ++ K G+ Sbjct: 182 VPITEVALSWLEKYQTDVRDAQVLKSGQFTDVIFLNNHGHQLTRQAVWQKIKKYCQLIGI 241 Query: 283 NK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336 K + H +R AT + GA + G + + YT + L + N Sbjct: 242 TKNVTPHTLRHTFATHLLENGADLRVVQEILGHSDITTTQIYTNLTQKHILEVYNQ 297 >gi|327183467|gb|AEA31914.1| tyrosine recombinase xerD [Lactobacillus amylovorus GRL 1118] Length = 301 Score = 168 bits (425), Expect = 1e-39, Method: Composition-based stats. Identities = 54/289 (18%), Positives = 108/289 (37%), Gaps = 27/289 (9%) Query: 71 LKWLISEYRK-SAHWGSLAVNSRISFESYFDQ---IIRKSGDFDY---RKITTKHIRSGV 123 L+ I +Y + S L+ N+ ++ ++ I+K G + + Sbjct: 6 LQDQIDDYLRFSQVERGLSTNTISAYRQDLEEYLSFIKKEGVSSWPTEASDVDAFLARQR 65 Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 + K T SS + ++SMR ++W RQ +NP L ++ PK++ ++E++ + Sbjct: 66 DLNKAT-SSISRLISSMRKFYQWLARQNIQKLNPMLEIDLPKKERRLPTALSREEVNRLL 124 Query: 184 S----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELP 238 G + R E L +G+R S+ +Q + ++ I+ K + + Sbjct: 125 EQPDVEQKLGLRDRAILETLYATGMRVSELINLELQDIHEDLGLIRVLGKGSKERLIPIS 184 Query: 239 DGFMKLLAM------------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-- 284 + + + E F+NN K+ K AG+ K Sbjct: 185 PVALHWIDKYQKQVRDPLILKSGKNDEHLFLNNRGGKLTRQAIWQMIKKYCQMAGITKDV 244 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 + H +R AT + GA + G + + YT + + L + Sbjct: 245 TPHTLRHTFATHLLENGADLRVVQEILGHSDISTTQIYTNLSQKHILQV 293 >gi|325956642|ref|YP_004292054.1| tyrosine recombinase xerD [Lactobacillus acidophilus 30SC] gi|325333207|gb|ADZ07115.1| tyrosine recombinase xerD [Lactobacillus acidophilus 30SC] Length = 301 Score = 167 bits (424), Expect = 2e-39, Method: Composition-based stats. Identities = 54/289 (18%), Positives = 107/289 (37%), Gaps = 27/289 (9%) Query: 71 LKWLISEYRK-SAHWGSLAVNSRISFESYFDQ---IIRKSGDFDY---RKITTKHIRSGV 123 L+ I +Y + S L+ N+ ++ ++ I+K G + + Sbjct: 6 LQDQIDDYLRFSQVERGLSTNTISAYRQDLEEYLSFIKKEGMSSWPTEASDVDAFLARQR 65 Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 + K T SS + ++SMR ++W RQ +NP L ++ PK++ + E++ + Sbjct: 66 DLNKAT-SSISRLISSMRKFYQWLARQNIQKLNPMLEIDLPKKERRLPTALSGEEVNRLL 124 Query: 184 S----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELP 238 G + R E L +G+R S+ +Q + ++ I+ K + + Sbjct: 125 EQPDVEQKLGLRDRAILETLYATGMRVSELINLELQDIHEDLGLIRVLGKGSKERLIPIS 184 Query: 239 DGFMKLLAM------------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-- 284 + + + E F+NN K+ K AG+ K Sbjct: 185 PVALHWIDKYQKQVRDPLILKSGKNDEHLFLNNRGGKLTRQAIWQMIKKYCQMAGITKDV 244 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 + H +R AT + GA + G + + YT + + L + Sbjct: 245 TPHTLRHTFATHLLENGADLRVVQEILGHSDISTTQIYTNLSQKHILQV 293 >gi|315038190|ref|YP_004031758.1| tyrosine recombinase XerD [Lactobacillus amylovorus GRL 1112] gi|312276323|gb|ADQ58963.1| tyrosine recombinase XerD [Lactobacillus amylovorus GRL 1112] Length = 301 Score = 167 bits (424), Expect = 2e-39, Method: Composition-based stats. Identities = 54/289 (18%), Positives = 108/289 (37%), Gaps = 27/289 (9%) Query: 71 LKWLISEYRK-SAHWGSLAVNSRISFESYFDQ---IIRKSGDFDY---RKITTKHIRSGV 123 L+ I +Y + S L+ N+ ++ ++ I+K G + + Sbjct: 6 LQDQIDDYLRFSQVERGLSTNTISAYRQDLEEYLSFIKKEGMSSWPTEASDVDAFLARQR 65 Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 + K T SS + ++SMR ++W RQ +NP L ++ PK++ ++E++ + Sbjct: 66 DLNKAT-SSISRLISSMRKFYQWLARQNIQKLNPMLEIDLPKKERRLPTALSREEVNRLL 124 Query: 184 S----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELP 238 G + R E L +G+R S+ +Q + ++ I+ K + + Sbjct: 125 EQPDVEQKLGLRDRAILETLYATGMRVSELINLELQDIHEDLGLIRVLGKGSKERLIPIS 184 Query: 239 DGFMKLLAM------------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-- 284 + + + E F+NN K+ K AG+ K Sbjct: 185 PVALHWIDKYQKQVRDPLILKSGKNDEHLFLNNRGGKLTRQAIWQMIKKYCQMAGITKDV 244 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 + H +R AT + GA + G + + YT + + L + Sbjct: 245 TPHTLRHTFATHLLENGADLRVVQEILGHSDISTTQIYTNLSQKHILQV 293 >gi|56459934|ref|YP_155215.1| site-specific recombinase [Idiomarina loihiensis L2TR] gi|56178944|gb|AAV81666.1| Site-specific recombinase [Idiomarina loihiensis L2TR] Length = 300 Score = 167 bits (424), Expect = 2e-39, Method: Composition-based stats. Identities = 57/271 (21%), Positives = 108/271 (39%), Gaps = 22/271 (8%) Query: 88 AVNSRISFESYFDQIIR-----KSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRV 142 + N++ ++ S + K D ++ + + +P S +FL+S + Sbjct: 26 SNNTQAAYRSDLRRYCEYLLSLKKSLMDTDEVVLQDYLLWRRMQGLSPRSTSRFLSSTKK 85 Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----QQFKSFWSEGSQPRLAFEF 198 F++AV+Q++VA++P ++RPK ++ED+ +Q + G + R E Sbjct: 86 FFQFAVKQQWVAVDPTARLKRPKLPQSIPHSLSEEDVISLLEQPDTETPIGLRDRTMLEV 145 Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV--------ELPDGFMKLLAMTPI 250 L +GLR ++ R L ++ G + E D ++K Sbjct: 146 LYATGLRVTELIRLQYDQLSRQQGLVRVIGKGNKERLVPLGEDALEWLDNYLKHGRPAIT 205 Query: 251 GKET--FFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHE 306 K + F+ + F K A +AG+ + S H +R AT + GA Sbjct: 206 DKSSPWIFVTQRGSLLTRQAFWYRLKHYAEEAGIYAHLSPHTLRHAFATHLLNHGADLRV 265 Query: 307 LMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 L G + + YT+ A R RL +++ Sbjct: 266 LQLLLGHSDLSTTQIYTQVA-RERLQALHAQ 295 >gi|295692872|ref|YP_003601482.1| tyrosine recombinase xerd [Lactobacillus crispatus ST1] gi|295030978|emb|CBL50457.1| Tyrosine recombinase xerD [Lactobacillus crispatus ST1] Length = 301 Score = 167 bits (423), Expect = 2e-39, Method: Composition-based stats. Identities = 51/292 (17%), Positives = 103/292 (35%), Gaps = 25/292 (8%) Query: 67 KPTTLKWLISEYRK-SAHWGSLAVNSRISFESYFDQIIRKSGDF-----DYRKITTKHIR 120 + LK I +Y + S L+ N+ ++ ++ + Sbjct: 2 EKNNLKDQIDDYLRYSQVERGLSDNTINAYRQDLEEFRTFVENEGMASWPTEASDVDAFL 61 Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM- 179 + SS + ++SMR ++W RQ +NP L ++ PK++ ++ +M Sbjct: 62 ARQRDLNKATSSISRLISSMRKFYQWLARQNIQKLNPMLEIDLPKKERRLPTALSQAEMN 121 Query: 180 ---QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITV 235 +Q + G + R E L +G+R S+ +Q L +N+ ++ G + Sbjct: 122 RLLEQPNTKRKLGIRDRAILETLYATGMRVSELINLELQDLHDNLGLVRVLGKGEKERLI 181 Query: 236 ELPDGFMKLLAM------------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283 + + + E F+NN +K+ K A + Sbjct: 182 PISPVALDWIKKYENEVRDPLILQVGKSDEHIFLNNRGKKITRQAIWQMIKKYCQMAAIT 241 Query: 284 K--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 K + H +R AT + GA + G + + YT + + L + Sbjct: 242 KDVTPHTLRHTFATHLLENGADLRVVQEILGHSDISTTQIYTNLSQKQILNV 293 >gi|241896295|ref|ZP_04783591.1| site-specific recombinase XerD [Weissella paramesenteroides ATCC 33313] gi|241870456|gb|EER74207.1| site-specific recombinase XerD [Weissella paramesenteroides ATCC 33313] Length = 302 Score = 167 bits (423), Expect = 2e-39, Method: Composition-based stats. Identities = 50/289 (17%), Positives = 105/289 (36%), Gaps = 24/289 (8%) Query: 65 RKKPTTLKWLISEYRKSAH-WGSLAVNSRISFESYFDQ-----IIRKSGDFDY-RKITTK 117 + + + ++ +Y L+ N++ S++ Q I K + T Sbjct: 2 KVQVGPFEDVLVDYLHYLTVERGLSANTKHSYQQDLVQFFQYLIAEKYDTLTVVDRFTIM 61 Query: 118 HIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177 +E + + ++ I+ ++++R F++ + NP V+ PK+ T E Sbjct: 62 AFLGQLEQKGKSRNTIIRMVSTLRKFFEFVQMNNLITSNPMDQVDSPKKAQHLPAVLTLE 121 Query: 178 DMQQFKSF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTI 232 +++ G + R E + +GLR S+ + +L ++ I+T K Sbjct: 122 EVEALLQVPDTNTPLGLRNRTILEVMYATGLRVSELVNLRLDNLHLDLGLIQTIGKGDKE 181 Query: 233 ITVELPDGFMKLLA----------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282 V + D +K L F+N+ ++ K +AG+ Sbjct: 182 RIVPIGDVAVKWLENYLNNSRPLLGKQQDPHVIFLNDHGHQLTRQGVWKLIKQWVKQAGI 241 Query: 283 NK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 K S H +R AT + GA + G + + YT +++ Sbjct: 242 TKDVSPHTLRHSFATHILENGADLRIVQELLGHADISTTQIYTHISNKR 290 >gi|260593346|ref|ZP_05858804.1| integrase/recombinase XerD [Prevotella veroralis F0319] gi|260534622|gb|EEX17239.1| integrase/recombinase XerD [Prevotella veroralis F0319] Length = 314 Score = 167 bits (423), Expect = 2e-39, Method: Composition-based stats. Identities = 52/275 (18%), Positives = 103/275 (37%), Gaps = 23/275 (8%) Query: 73 WLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTK-----HIRSGVESR 126 ++S YR+ + N+ ++ D+++R + + K + + Sbjct: 9 DIVSRYRRYLKLEKGHSANTLDAYMRDLDKLLRYLAAENIDVLKVKLEDLEFFAASISDL 68 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 P S + L+ +R +++ V Y+ ++P +E PK+ + ++ + Sbjct: 69 GIGPRSLARILSGVRQFYRFLVLDGYLEVDPTELLESPKQPNHLPEVLSTAEVDLLEQAI 128 Query: 187 S----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGF 241 EG + R E L GLR S+ + +L ++ K V + Sbjct: 129 DLSKWEGHRNRAIIEVLFSCGLRVSELTHLTLSNLYIEEQYLRVLGKGSKERLVPISPRA 188 Query: 242 MKLL----------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289 ++ L + P ++ F+N + T I K A +AG+ K S H + Sbjct: 189 LEELSYWFDDRNKMDIKPGEEDYVFLNRRGHHLTRTMILIMIKRYAVEAGIKKTISPHTL 248 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 R AT + GA + A G +++ E YT Sbjct: 249 RHSFATSLLEGGADLRAIQAMLGHESIGTTEIYTH 283 >gi|227893483|ref|ZP_04011288.1| integrase-recombinase [Lactobacillus ultunensis DSM 16047] gi|227864708|gb|EEJ72129.1| integrase-recombinase [Lactobacillus ultunensis DSM 16047] Length = 303 Score = 166 bits (421), Expect = 3e-39, Method: Composition-based stats. Identities = 52/289 (17%), Positives = 107/289 (37%), Gaps = 27/289 (9%) Query: 71 LKWLISEYRK-SAHWGSLAVNSRISFESYFDQ---IIRKSGDFDY---RKITTKHIRSGV 123 L+ I +Y + S L+ N+ ++ ++ I K G + + Sbjct: 8 LQDQIDDYLRYSQVERGLSSNTISAYRQDLEEYLSFIEKEGMPSWPTEASDVDAFLARQR 67 Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 + K T SS + ++SMR ++W RQ +NP L ++ PK++ T+E++ + Sbjct: 68 DLNKAT-SSISRLISSMRKFYQWLARQNIQKLNPMLEIDLPKKERRLPTALTQEEVNKLL 126 Query: 184 S----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELP 238 G + R E L +G+R S+ +Q L +++ ++ K + + Sbjct: 127 EQPDVKRKLGLRDRAILETLYATGMRVSELINLELQDLHDDLGLVRVIGKGSKERLIPIS 186 Query: 239 DGFMKLLAM------------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NK 284 + + E F+N+ + + K AG+ + Sbjct: 187 PVALNWIKKYEKEVRDPLILHVGQNDEHIFLNSRGKMLTRQAIWQMIKKYCQMAGIVKDV 246 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 + H +R AT + GA + G + + YT + + L + Sbjct: 247 TPHTLRHTFATHLLENGADLRVVQEILGHSDISTTQIYTNLSQKHILQV 295 >gi|282852078|ref|ZP_06261436.1| tyrosine recombinase XerD [Lactobacillus gasseri 224-1] gi|282556838|gb|EFB62442.1| tyrosine recombinase XerD [Lactobacillus gasseri 224-1] Length = 296 Score = 166 bits (420), Expect = 5e-39, Method: Composition-based stats. Identities = 47/288 (16%), Positives = 107/288 (37%), Gaps = 27/288 (9%) Query: 75 ISEYRK-SAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK------ITTKHIRSGVESRK 127 + +Y + S L+ N+ IS+ + ++ + D + + + + + K Sbjct: 5 LEDYLRFSQVERGLSPNTIISYRTDLEEYLDYLQDQNETSWEVDYLVVDAFLATQKDKGK 64 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-- 185 T +S + ++S+R ++W +RQ+ + +P + ++ PK + ++E++ + + Sbjct: 65 AT-TSISRMISSLRKFYQWLLRQDIIERDPLVKIDSPKSERRLPTALSEEEVDKLLAAPD 123 Query: 186 --WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFM 242 G + R E L +G+R S+ + ++ I+ K V + + + Sbjct: 124 TNTPLGIRDRAMLEVLYATGMRVSELINLRTGDIHADLKIIRVLGKGSKERLVPITEVAL 183 Query: 243 KLLAMTPIG------------KETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHG 288 L + F+NN ++ K G+ K + H Sbjct: 184 SWLEKYQTDVRDAQVLKSGQFTDVIFLNNHGHQLTRQAVWQKIKKYCQLIGITKNVTPHT 243 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336 +R AT + GA + G + + YT + L + N Sbjct: 244 LRHTFATHLLENGADLRVVQEILGHSDITTTQIYTNLTQKHILEVYNQ 291 >gi|260427159|ref|ZP_05781138.1| phage integrase family protein [Citreicella sp. SE45] gi|260421651|gb|EEX14902.1| phage integrase family protein [Citreicella sp. SE45] Length = 296 Score = 166 bits (420), Expect = 5e-39, Method: Composition-based stats. Identities = 51/288 (17%), Positives = 99/288 (34%), Gaps = 16/288 (5%) Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125 + +I+E +++ W + + R E + K G D + KH+ +++ Sbjct: 7 HARRSWSPIIAELKQTEKWANFSPRYRKDLEPILLYLDEKIGSKDVSLLRPKHVYEAMDA 66 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER---PKRKTEGIRPWTKEDMQQF 182 H A ++ +L + A R+ + NP +ER PK + + W + +Q+ Sbjct: 67 NAHRVRFANYIPVAITLLARLARRKGWRTDNPAEGIERLAVPKERQKPHYAWPDDAVQKM 126 Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF- 241 + +E P+L E + S R D + KTGT + + + Sbjct: 127 REEGAE--LPKLILEIGIGSVQRPGDWVGFTWGDYDGESLRLVQNKTGTSLKLPCTEELK 184 Query: 242 ------MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSA 294 L P+ + D M+ + + + + G+ H +R Sbjct: 185 QKLDAAKASLKAPPLPERPILARADGTSMSYYMLARIMREERARLGLSKYDLHALRYRGV 244 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGAD---RIRLGIKNSRRI 339 A AG T E+ + G + Y A + +L R Sbjct: 245 KELAYAGCTDDEIASYSGHMSKSMIRKYAGEARQEMQAKLAHAKRERF 292 >gi|304385052|ref|ZP_07367398.1| tyrosine recombinase XerD [Pediococcus acidilactici DSM 20284] gi|304329246|gb|EFL96466.1| tyrosine recombinase XerD [Pediococcus acidilactici DSM 20284] Length = 296 Score = 165 bits (419), Expect = 6e-39, Method: Composition-based stats. Identities = 54/286 (18%), Positives = 110/286 (38%), Gaps = 24/286 (8%) Query: 72 KWLISEYRKSAH-WGSLAVNSRISFE---SYFDQIIRKSGDFDYRKITTKHIRSGVESRK 127 LI++Y + L+ N+ +S+ + +++ D + + I + +++ K Sbjct: 3 DDLINDYLHALKVERGLSDNTIVSYRQELRHLQNFLQEQHIADIKDVDRYTILNYLDALK 62 Query: 128 HT---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 T SS+I ++S+R FK+ + + + NP ++++ PKR T E++++ Sbjct: 63 QTGRARSSSIHTISSLRKFFKYLLLNDQIQTNPMVNIDPPKRAQHLPSVLTTEEVERLLK 122 Query: 185 FW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPD 239 G + R E + +GLR S+ + L + I K + + D Sbjct: 123 VPDTSKPLGIRDRAILEVMYATGLRVSELIALNLNELHLEMGLIETVGKGNKQRIIPIGD 182 Query: 240 GFMKLLAM---TPIGKET-------FFINNDKQKMNATQFSIWFKAKATKAGVNK--SAH 287 ++ L P F+N + KA+ KAG+ K + H Sbjct: 183 VAIQWLERYINGPRRALLGAKRYNEIFLNQHGHPLTRQGVWKNLKAQVQKAGIKKNITPH 242 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 +R AT + GA + G + + YT + + + Sbjct: 243 TLRHSFATHLLENGADLRIVQELLGHADISTTQIYTHITQQRLVDV 288 >gi|227879087|ref|ZP_03996976.1| integrase-recombinase [Lactobacillus crispatus JV-V01] gi|256843076|ref|ZP_05548564.1| tyrosine recombinase XerD [Lactobacillus crispatus 125-2-CHN] gi|256850272|ref|ZP_05555701.1| integrase/recombinase [Lactobacillus crispatus MV-1A-US] gi|262046336|ref|ZP_06019298.1| tyrosine recombinase XerD [Lactobacillus crispatus MV-3A-US] gi|293379759|ref|ZP_06625891.1| tyrosine recombinase XerD [Lactobacillus crispatus 214-1] gi|312977261|ref|ZP_07789009.1| tyrosine recombinase XerD [Lactobacillus crispatus CTV-05] gi|227861328|gb|EEJ68958.1| integrase-recombinase [Lactobacillus crispatus JV-V01] gi|256614496|gb|EEU19697.1| tyrosine recombinase XerD [Lactobacillus crispatus 125-2-CHN] gi|256712909|gb|EEU27901.1| integrase/recombinase [Lactobacillus crispatus MV-1A-US] gi|260573207|gb|EEX29765.1| tyrosine recombinase XerD [Lactobacillus crispatus MV-3A-US] gi|290923668|gb|EFE00539.1| tyrosine recombinase XerD [Lactobacillus crispatus 214-1] gi|310895692|gb|EFQ44758.1| tyrosine recombinase XerD [Lactobacillus crispatus CTV-05] Length = 301 Score = 165 bits (419), Expect = 6e-39, Method: Composition-based stats. Identities = 50/288 (17%), Positives = 102/288 (35%), Gaps = 25/288 (8%) Query: 71 LKWLISEYRK-SAHWGSLAVNSRISFESYFDQIIRKSGDF-----DYRKITTKHIRSGVE 124 LK I +Y + S L+ N+ ++ ++ + + Sbjct: 6 LKDQIDDYLRYSQVERGLSDNTINAYRQDLEEFQTFVENEGMASWPTEASDVDAFLARQR 65 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----Q 180 SS + ++SMR ++W RQ +NP L ++ PK++ ++ +M + Sbjct: 66 DLNKATSSISRLISSMRKFYQWLARQNIQKLNPMLEIDLPKKERRLPTALSQAEMNRLLE 125 Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPD 239 Q + G + R E L +G+R S+ +Q L +++ ++ G + + Sbjct: 126 QPNTKRKLGIRDRAILETLYATGMRVSELINLELQDLHDDLGLVRVLGKGEKERLIPISP 185 Query: 240 GFMKLLAM------------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--S 285 + + E F+NN +K+ K A + K + Sbjct: 186 VALDWIKKYENEVRDPLILQVGKSDEHIFLNNRGKKITRQAIWQMIKKYCQMAAITKDVT 245 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 H +R AT + GA + G + + YT + + L + Sbjct: 246 PHTLRHTFATHLLENGADLRVVQEILGHSDISTTQIYTNLSQKQILNV 293 >gi|213969060|ref|ZP_03397199.1| integrase/recombinase XerD [Pseudomonas syringae pv. tomato T1] gi|301384045|ref|ZP_07232463.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv. tomato Max13] gi|302058751|ref|ZP_07250292.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv. tomato K40] gi|302131712|ref|ZP_07257702.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213926058|gb|EEB59614.1| integrase/recombinase XerD [Pseudomonas syringae pv. tomato T1] Length = 298 Score = 165 bits (419), Expect = 6e-39, Method: Composition-based stats. Identities = 55/289 (19%), Positives = 115/289 (39%), Gaps = 28/289 (9%) Query: 74 LISEYRKSAHW--GSLAVNSRISFESYFD----QIIRKSGDFDY--RKITTKHIRSGVES 125 LI ++ A W L+ N+R S+ S + ++ D R++ H+ + Sbjct: 8 LIDQFL-DALWLEKGLSDNTRDSYRSDLALFNGWLQERNVDLPGAGREVILDHL-AWRVE 65 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + P S +FL+ R +++ +R++ ++++P L ++ P+ + ++ D++ + Sbjct: 66 NAYKPRSTARFLSGARGFYRYLLREKLISVDPTLQIDMPQLGKPLPKSLSEADVEALLAA 125 Query: 186 ----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-IITVELPDG 240 G + R E L GLR ++ ++ + ++ G+ V + + Sbjct: 126 PDLSEPIGERDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKERLVPMGEE 185 Query: 241 FMKLLAMTPIGK----------ETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHG 288 + + G + F + +M F K +AT AG+ KS H Sbjct: 186 AIVWVERYMRGARDELLGGKPSDVLFPSTRGDQMTRQTFWHRIKHQATVAGIGKSLSPHT 245 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 +R AT + GA + G + + YT A R RL +++ Sbjct: 246 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-RARLQEMHAK 293 >gi|116492850|ref|YP_804585.1| tyrosine recombinase XerD subunit [Pediococcus pentosaceus ATCC 25745] gi|116103000|gb|ABJ68143.1| tyrosine recombinase XerD subunit [Pediococcus pentosaceus ATCC 25745] Length = 295 Score = 165 bits (419), Expect = 7e-39, Method: Composition-based stats. Identities = 59/285 (20%), Positives = 111/285 (38%), Gaps = 24/285 (8%) Query: 73 WLISEYRKSAH-WGSLAVNSRISFE---SYFDQIIRKSGDFDYRKITTKHIRSGVESRKH 128 LI++Y S L+ N+ IS+ + + + K D +KI I ++ K Sbjct: 3 DLINDYLHSLKVERGLSDNTIISYRQELRHLNDYLTKEKITDIKKIDRYAILDYLDELKK 62 Query: 129 T---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 T SS+I ++S+R FK+ + + + ++P ++++ PKR T ++++ Sbjct: 63 TGRARSSSIHTISSLRKFFKYLLIVDKIDVDPMVNIDPPKRAHHLPSVLTTAEVEKLLQV 122 Query: 186 ----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG 240 G + R E + +GLR S+ + L + I+T K + + D Sbjct: 123 PNTNEPLGMRDRTILEVMYATGLRVSELITLNLNELHLEMGLIETIGKGNKKRIIPIGDV 182 Query: 241 FMKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVNK--SAHG 288 +K L G F+N + KA+ KAG+ K + H Sbjct: 183 AIKWLNRYINGPRRILLGDKKYNEIFLNQHGHPLTRQGIWKNLKAQVKKAGIEKNITPHT 242 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 +R AT + GA + G + + YT + + + Sbjct: 243 LRHSFATHLLENGADLRIVQELLGHADISTTQIYTHITQQRLVDV 287 >gi|148549356|ref|YP_001269458.1| phage integrase family protein [Pseudomonas putida F1] gi|148513414|gb|ABQ80274.1| phage integrase family protein [Pseudomonas putida F1] Length = 326 Score = 165 bits (418), Expect = 7e-39, Method: Composition-based stats. Identities = 69/316 (21%), Positives = 121/316 (38%), Gaps = 32/316 (10%) Query: 17 RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76 +HG Y RKG R+ Y AL K + P + + Sbjct: 17 KHG-AYYLVRKGKWERL----------DKDYQGALLA-YAKIMGGKGQGEMPRLIDDALD 64 Query: 77 EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQF 136 RK LA N+ +E+ +++ + +F+ R++ +H+ + TP+ A + Sbjct: 65 AMRK-----RLAENTIKQYEAAAEKLKKYLAEFEPRQVLPRHVAALKLHMSDTPNMANRV 119 Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ-PRLA 195 ++ +R++F +A+ Q+ V NPC ++R + + R T E+ F + S R Sbjct: 120 ISFLRMVFNYALEQQIVDSNPCTGIKR-HTEKKRDRYITDEE---FAAICDAASPYIRSI 175 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT-----PI 250 E +G R D + + + QKTG + V + +L+A T + Sbjct: 176 LEMCYLTGQRIGDVLAIKLSDISEKGIAFDQQKTGAKLIVGMTPDLEQLIARTKAIPRKV 235 Query: 251 GKETFFINN-DKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELM 308 T F + ++ FK KA V + H +R S T + D G A +L Sbjct: 236 RGLTLFCTRGGGKPVSYETVKDAFKKACEKAKVTGATIHDLRAKSLTDTDDQGNDAQKL- 294 Query: 309 ATYGWKTVDQAETYTK 324 G E Y + Sbjct: 295 --GGHTNAKMTERYLR 308 >gi|237800088|ref|ZP_04588549.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv. oryzae str. 1_6] gi|331022943|gb|EGI03000.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv. oryzae str. 1_6] Length = 298 Score = 165 bits (418), Expect = 8e-39, Method: Composition-based stats. Identities = 56/289 (19%), Positives = 114/289 (39%), Gaps = 28/289 (9%) Query: 74 LISEYRKSAHW--GSLAVNSRISFESYFD----QIIRKSGDFDY--RKITTKHIRSGVES 125 LI + A W L+ N+R S+ S + ++ D R++ H+ + Sbjct: 8 LIDRFL-DALWLEKGLSDNTRDSYRSDLALFNGWLQERNVDLPVAGREVILDHL-AWRVE 65 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + P S +FL+ R +++ +R++ +A++P L ++ P+ + ++ D++ + Sbjct: 66 NAYKPRSTARFLSGARGFYRYLLREKLIAVDPTLQIDMPQLGKPLPKSLSEADVEALLAA 125 Query: 186 ----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-IITVELPDG 240 G + R E L GLR ++ ++ + ++ G+ V + + Sbjct: 126 PDLSEPIGERDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKERLVPMGEE 185 Query: 241 FMKLLAMTPIGK----------ETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHG 288 + + G + F + +M F K +AT AG+ KS H Sbjct: 186 AIVWVERYMRGARDELLGGKPSDVLFPSTRGDQMTRQTFWHRIKHQATVAGIGKSLSPHT 245 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 +R AT + GA + G + + YT A R RL +++ Sbjct: 246 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-RARLQEMHAK 293 >gi|302185529|ref|ZP_07262202.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv. syringae 642] Length = 298 Score = 165 bits (418), Expect = 8e-39, Method: Composition-based stats. Identities = 55/288 (19%), Positives = 110/288 (38%), Gaps = 26/288 (9%) Query: 74 LISEYRKSAHW--GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH-----IRSGVESR 126 LI ++ A W L+ N+R S+ S + + I+ + Sbjct: 8 LIDQFL-DALWLEKGLSDNTRDSYRSDLALFHGWLQERNVDLISAGREVILDHLAWRVEN 66 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF- 185 + P S +FL+ R +++ +R++ ++++P L ++ P+ + ++ D++ + Sbjct: 67 AYKPRSTARFLSGARGFYRYLLREKLISVDPTLQIDMPQLGKPLPKSLSEADVEALLAAP 126 Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-IITVELPDG- 240 G + R E L GLR ++ ++ + ++ G+ V + + Sbjct: 127 DLSEPIGERDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKERLVPMGEES 186 Query: 241 -------FMKLLAMTPIGKET--FFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGV 289 GK + F + ++M F K +AT AG+ KS H + Sbjct: 187 IVWVERYLRGARDELLGGKPSDVLFPSTRGEQMTRQTFWHRIKHQATVAGIGKSLSPHTL 246 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 R AT + GA + G + + YT A R RL ++R Sbjct: 247 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-RARLQEMHAR 293 >gi|282879077|ref|ZP_06287837.1| putative tyrosine recombinase XerD [Prevotella buccalis ATCC 35310] gi|281298811|gb|EFA91220.1| putative tyrosine recombinase XerD [Prevotella buccalis ATCC 35310] Length = 321 Score = 165 bits (418), Expect = 8e-39, Method: Composition-based stats. Identities = 52/278 (18%), Positives = 106/278 (38%), Gaps = 23/278 (8%) Query: 70 TLKWLISEYRKSAHW-GSLAVNSRISFESYFDQII-----RKSGDFDYRKITTKHIRSGV 123 T ++ Y + + + N+ I++++ ++ ++ D R +H + Sbjct: 7 TTTDIVKSYTRYLKLERNYSPNTLIAYQNDLGWLLSFCEQQEISPLDVRLEDLQHFAGQL 66 Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 P+S + L+ +R +++ V Y+ +P +E P+ + E++ + Sbjct: 67 HEHDIGPTSQARILSGVRSFYRFLVLDGYIEQDPTELLESPRLGEHLPEVLSTEEVDMIE 126 Query: 184 SFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELP 238 + EG + + E L GLR S+ + +L + I+ T K V + Sbjct: 127 NSIDLSKPEGQRNKAIIEVLFSCGLRVSELVNLQLSNLYLDEGFIRVTGKGNKERLVPIS 186 Query: 239 DGF----------MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SA 286 L+ + P ++ F+N + T I K +A +AG+ K S Sbjct: 187 PKAIKELNLWFLDRNLMKIKPGEQDYVFLNRRGAHLTRTMILIMLKRQAQEAGIQKTISP 246 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R AT GA + G +++ E YT Sbjct: 247 HTLRHSFATELLKGGADLRAIQVMLGHESIGTTEIYTH 284 >gi|302382463|ref|YP_003818286.1| integrase [Brevundimonas subvibrioides ATCC 15264] gi|302193091|gb|ADL00663.1| integrase family protein [Brevundimonas subvibrioides ATCC 15264] Length = 402 Score = 165 bits (418), Expect = 8e-39, Method: Composition-based stats. Identities = 75/373 (20%), Positives = 132/373 (35%), Gaps = 39/373 (10%) Query: 9 PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68 PFV + R +G + YFR+G R L P S + A + A+ K + R Sbjct: 16 PFVQRVRKPNGDVHLYFRRGAFREGPLKSPDGSPELKAEIDAILERVRKASDAIA-RPAA 74 Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH 128 T+ ++ Y KSA + SLA ++ ++ Y D++I +GD ++T + ++ Sbjct: 75 GTVGGMLKAYNKSAEFLSLARITQRGYQDYIDELIADTGDLLLSEVTRSWVIGMRDAWAL 134 Query: 129 TP-SSAIQFLTSMRVLFKWAVRQE---YVAINP---CLSVERPKRKTEGIRPWTKEDMQQ 181 ++A + + ++ A+ + + +P V RP E W +++ Sbjct: 135 RGHNAANKRMQVLKNALMPAIEDDTDQRIQGDPFHKVRKVRRPHDAGEAHPAWELAEVEI 194 Query: 182 FKSFWSEGSQPRLAFEFLL--YSGLRCSDSCRAGVQHLQNNI---------FSIKTQKTG 230 QP LA L Y G R + T K Sbjct: 195 AIEEAIRRDQPGLARAIALGRYGGFRRGTIVSIPLNARTLGRDGRGEPETRLVWITSKRQ 254 Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAK--------ATKAGV 282 + ++A TP T N + QF + +A + Sbjct: 255 VLSDKREDARLAAVIARTPNRALTIAYNKRGDPFSVRQFDQALERLLDRLAADGKIRATI 314 Query: 283 NKS------------AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 ++ HG+R A+AGA+ E+MA + A+ Y + A R + Sbjct: 315 KRTSDGRDVVVCPLTIHGLRHARGVELAEAGASDAEIMAQLEHASDAAAKIYRRQAQRRK 374 Query: 331 LGIKNSRRISSVV 343 + RI +VV Sbjct: 375 MADAGQDRIDNVV 387 >gi|270291303|ref|ZP_06197525.1| tyrosine recombinase XerD [Pediococcus acidilactici 7_4] gi|270280149|gb|EFA25985.1| tyrosine recombinase XerD [Pediococcus acidilactici 7_4] Length = 295 Score = 165 bits (418), Expect = 9e-39, Method: Composition-based stats. Identities = 54/286 (18%), Positives = 109/286 (38%), Gaps = 24/286 (8%) Query: 72 KWLISEYRKSAH-WGSLAVNSRISFE---SYFDQIIRKSGDFDYRKITTKHIRSGVESRK 127 LI++Y + L+ N+ +S+ + +++ D + + I + +++ K Sbjct: 2 DDLINDYLHALKVERGLSDNTIVSYRQELRHLQNFLQEQHIADIKDVDRYTILNYLDALK 61 Query: 128 HT---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 T SS+I ++S+R FK+ + + + NP +++ PKR T E++++ Sbjct: 62 QTGRARSSSIHTISSLRKFFKYLLLNDQIQTNPMANIDPPKRAQHLPSVLTTEEVERLLK 121 Query: 185 FW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPD 239 G + R E + +GLR S+ + L + I K + + D Sbjct: 122 VPDTSKPLGIRDRAILEVMYATGLRVSELIALNLNELHLEMGLIETVGKGNKQRIIPIGD 181 Query: 240 GFMKLLAM---TPIGKET-------FFINNDKQKMNATQFSIWFKAKATKAGVNK--SAH 287 ++ L P F+N + KA+ KAG+ K + H Sbjct: 182 VAIQWLERYINGPRRALLGAKRYNEIFLNQHGHPLTRQGVWKNLKAQVQKAGIKKNITPH 241 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 +R AT + GA + G + + YT + + + Sbjct: 242 TLRHSFATHLLENGADLRIVQELLGHADISTTQIYTHITQQRLVDV 287 >gi|288800351|ref|ZP_06405809.1| integrase/recombinase XerD [Prevotella sp. oral taxon 299 str. F0039] gi|288332564|gb|EFC71044.1| integrase/recombinase XerD [Prevotella sp. oral taxon 299 str. F0039] Length = 311 Score = 165 bits (417), Expect = 1e-38, Method: Composition-based stats. Identities = 62/306 (20%), Positives = 116/306 (37%), Gaps = 28/306 (9%) Query: 66 KKPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIR--KSGDFDYRKITTK---HI 119 K+ T+ +I Y + + ++N+ ++++ + +I + + D K+ H Sbjct: 3 KENQTIAKVIRSYLRYLKLERNYSINTIEAYKNDLEHLITYCQENNRDVLKMQIADFEHF 62 Query: 120 RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179 + RK SS + L+ +R +++ V + NP +E P + E++ Sbjct: 63 AFILHERKIGASSQARILSGVRSFYRYLVIDGILEDNPTELLESPILGEHLPEVLSTEEV 122 Query: 180 QQFKSFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIIT 234 Q ++ EG + R E L GLR S+ + ++ I+ K Sbjct: 123 DQLQNSIDLSKWEGHRNRAIIEILFSCGLRVSELINLKLSNIYIIERYIRVIGKGSKERL 182 Query: 235 VELPDGF----------MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284 + + D ++ + P ++ F+N + T I K +A AG+ K Sbjct: 183 IPISDKALYELELWFRDRNIMNIKPGEQDYVFLNRRGAHLTRTMILIMIKKQAELAGIKK 242 Query: 285 --SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342 S H +R AT GA + A G ++V E YT DR L + I Sbjct: 243 TISPHTLRHSFATELLRGGADLIAIQAMLGHESVSTTEIYTH-IDRESL----RKAIIEH 297 Query: 343 VDSDDP 348 + P Sbjct: 298 HPRNKP 303 >gi|71736133|ref|YP_273616.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv. phaseolicola 1448A] gi|71556686|gb|AAZ35897.1| tyrosine recombinase XerD [Pseudomonas syringae pv. phaseolicola 1448A] Length = 298 Score = 165 bits (417), Expect = 1e-38, Method: Composition-based stats. Identities = 55/289 (19%), Positives = 114/289 (39%), Gaps = 28/289 (9%) Query: 74 LISEYRKSAHW--GSLAVNSRISFESYFD----QIIRKSGDFDY--RKITTKHIRSGVES 125 LI + A W L+ N+R S+ S + ++ D R++ H+ + Sbjct: 8 LIDRFL-DALWLEKGLSDNTRDSYRSDLALFNGWLQERNADLPSAGREVILDHL-AWRVE 65 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + P S +FL+ R +++ +R++ ++++P L ++ P+ + ++ D++ + Sbjct: 66 NAYKPRSTARFLSGARGFYRYLLREKLISVDPTLQIDMPQLGKPLPKSLSEADVEALLAA 125 Query: 186 ----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-IITVELPDG 240 G + R E L GLR ++ ++ + ++ G+ V + + Sbjct: 126 PDLSEPIGERDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKERLVPMGEE 185 Query: 241 FMKLLAMTPIGK----------ETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHG 288 + + G + F + +M F K +AT AG+ KS H Sbjct: 186 AIVWVERYLRGARDELLGGKPSDVLFPSTRGDQMTRQTFWHRIKHQATVAGIGKSLSPHT 245 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 +R AT + GA + G + + YT A R RL +++ Sbjct: 246 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-RARLQELHAK 293 >gi|289625892|ref|ZP_06458846.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289646210|ref|ZP_06477553.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv. aesculi str. 2250] gi|298488278|ref|ZP_07006311.1| Site-specific recombinase XerD [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298157217|gb|EFH98304.1| Site-specific recombinase XerD [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|330867528|gb|EGH02237.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 298 Score = 164 bits (416), Expect = 1e-38, Method: Composition-based stats. Identities = 55/289 (19%), Positives = 114/289 (39%), Gaps = 28/289 (9%) Query: 74 LISEYRKSAHW--GSLAVNSRISFESYFD----QIIRKSGDFDY--RKITTKHIRSGVES 125 LI + A W L+ N+R S+ S + ++ D R++ H+ + Sbjct: 8 LIDRFL-DALWLEKGLSDNTRDSYRSDLALFNGWLQERNVDLPSAGREVILDHL-AWRVE 65 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + P S +FL+ R +++ +R++ ++++P L ++ P+ + ++ D++ + Sbjct: 66 NAYKPRSTARFLSGARGFYRYLLREKLISVDPTLQIDMPQLGKPLPKSLSEADVEALLAA 125 Query: 186 ----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-IITVELPDG 240 G + R E L GLR ++ ++ + ++ G+ V + + Sbjct: 126 PDLSEPIGERDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKERLVPMGEE 185 Query: 241 FMKLLAMTPIGK----------ETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHG 288 + + G + F + +M F K +AT AG+ KS H Sbjct: 186 AIVWVERYLRGARDELLGGKPSDVLFPSTRGDQMTRQTFWHRIKHQATVAGIGKSLSPHT 245 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 +R AT + GA + G + + YT A R RL +++ Sbjct: 246 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-RARLQEMHAK 293 >gi|330964079|gb|EGH64339.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv. actinidiae str. M302091] Length = 298 Score = 164 bits (416), Expect = 1e-38, Method: Composition-based stats. Identities = 56/289 (19%), Positives = 117/289 (40%), Gaps = 28/289 (9%) Query: 74 LISEYRKSAHW--GSLAVNSRISFESYFD----QIIRKSGDFDY--RKITTKHIRSGVES 125 LI ++ + W L+ N+R S+ S + ++ D R++ H+ V+ Sbjct: 8 LIDQFLDTL-WLEKGLSDNTRDSYRSDLALFNGWLQERNVDLPSAGREVILDHLAWRVD- 65 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + P S +FL+ R +++ +R++ +A++P L ++ P+ + ++ D++ + Sbjct: 66 NAYKPRSTARFLSGARGFYRYLLREKLIAVDPTLQIDMPQLGKPLPKSLSEADVEALLAA 125 Query: 186 ----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-IITVELPDG 240 G + R E L GLR ++ ++ + ++ G+ V + + Sbjct: 126 PDLSEPIGERDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKERLVPMGEE 185 Query: 241 FMKLLAMTPIGK----------ETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHG 288 + + G + F + +M F K +AT AG++KS H Sbjct: 186 AIVWVERYMRGARDELLGGKPSDVLFPSTRGDQMTRQTFWHRIKHQATVAGISKSLSPHT 245 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 +R AT + GA + G + + YT A R RL +++ Sbjct: 246 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-RARLQEMHAK 293 >gi|330936913|gb|EGH41038.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv. pisi str. 1704B] Length = 298 Score = 164 bits (415), Expect = 2e-38, Method: Composition-based stats. Identities = 54/288 (18%), Positives = 109/288 (37%), Gaps = 26/288 (9%) Query: 74 LISEYRKSAHW--GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH-----IRSGVESR 126 LI + A W L+ N+R S+ S + + I+ + Sbjct: 8 LIDRFL-DALWLEKGLSDNTRDSYRSDLALFNGWLQERNVDLISAGREVILDHLAWRVEN 66 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF- 185 + P S +FL+ +R +++ +R++ ++++P L ++ P+ + ++ D++ + Sbjct: 67 AYKPRSTARFLSGVRGFYRYLLREKLISVDPTLQIDMPQLGKPLPKSLSEADVEALLAAP 126 Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-IITVELPDG- 240 G + R E L GLR ++ ++ + ++ G+ V + + Sbjct: 127 DLSEPIGERDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKERLVPMGEES 186 Query: 241 -------FMKLLAMTPIGKET--FFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGV 289 GK + F + +M F K +AT AG+ KS H + Sbjct: 187 IVWVERYLRGARDELLGGKPSDVLFPSTRGDQMTRQTFWHRIKHQATVAGIGKSLSPHTL 246 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 R AT + GA + G + + YT A R RL +++ Sbjct: 247 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-RARLQELHAK 293 >gi|330959145|gb|EGH59405.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv. maculicola str. ES4326] Length = 298 Score = 164 bits (415), Expect = 2e-38, Method: Composition-based stats. Identities = 58/289 (20%), Positives = 116/289 (40%), Gaps = 28/289 (9%) Query: 74 LISEYRKSAHW--GSLAVNSRISFESYFD----QIIRKSGDFDY--RKITTKHIRSGVES 125 LI ++ A W L+ N+R S+ S + ++ D R++ H+ V+ Sbjct: 8 LIDQFL-DALWLEKGLSDNTRDSYRSDLALFNGWLQERNVDLPSAGREVILDHLAWRVD- 65 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + P S +FL+ R +++ +R++ +AI+P L ++ P+ + ++ D++ + Sbjct: 66 NAYKPRSTARFLSGARGFYRYLLREKLIAIDPTLQIDMPQLGKPLPKSLSEADVEALLAA 125 Query: 186 ----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-IITVELPDG 240 G + R E L GLR ++ ++ + ++ G+ V + + Sbjct: 126 PDLSEPIGQRDRAVLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKERLVPMGEE 185 Query: 241 FMKLLAMTPIGK----------ETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHG 288 + + G + F + +M F K +AT AG+ KS H Sbjct: 186 AIVWVERYLRGARDELLGGKPSDVLFPSTRGDQMTRQTFWHRIKHQATVAGIGKSLSPHT 245 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 +R AT + GA + G + + YT A R RL +++ Sbjct: 246 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-RARLQEIHAK 293 >gi|150397133|ref|YP_001327600.1| hypothetical protein Smed_1931 [Sinorhizobium medicae WSM419] gi|150028648|gb|ABR60765.1| hypothetical protein Smed_1931 [Sinorhizobium medicae WSM419] Length = 388 Score = 164 bits (415), Expect = 2e-38, Method: Composition-based stats. Identities = 54/319 (16%), Positives = 105/319 (32%), Gaps = 22/319 (6%) Query: 34 RLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKS--AHWGSLAVNS 91 RLP F P + +I R+ K L+ ++ W LA ++ Sbjct: 65 RLPDLKSKEFWPE------ATKAHEAFIRRGRQGIKDFKALVEAFQSETNPFWTKLAAST 118 Query: 92 RISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQE 151 + + + D I GD +TT + +++ TP+ A QF + L W + Sbjct: 119 QRGYRTSGDIIKETWGDDLPVDLTTVDAQDAIDALGETPAKANQFRAFLSRLMAWGASRG 178 Query: 152 YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCR 211 Y N E+ E PW + ++ ++G R D Sbjct: 179 YCKTNVVEMTEKIP-GGEPWVPWPNWAFEILLEHAP--FHMQMIAMSAFFTGQRQGDVLA 235 Query: 212 AGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ--- 268 N +++ QKTG + + + + K + P + ++ + + Sbjct: 236 MTKPKAGENTIAVRAQKTGNTVWIPIHFAYRKWIDRVPTSD-SVMLHAGARATSYKSPDG 294 Query: 269 -FSIWFKAKATKAGVNKS-----AHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 + W K A A HG+RK + + G T +++ A + + Y Sbjct: 295 FRTEWQKLMAKDAFKPFRENRIVFHGLRKNAVINLLEVGCTENQVGAICN-MSAQMVQHY 353 Query: 323 TKGADRIRLGIKNSRRISS 341 + L + + + Sbjct: 354 GREVVLRSLAKDAMKLMEA 372 >gi|299133965|ref|ZP_07027159.1| integrase family protein [Afipia sp. 1NLS2] gi|298591801|gb|EFI52002.1| integrase family protein [Afipia sp. 1NLS2] Length = 169 Score = 164 bits (415), Expect = 2e-38, Method: Composition-based stats. Identities = 50/148 (33%), Positives = 74/148 (50%) Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET 254 F+ LY+GLR D+ R G QH+++ I ++ T+KTG +T+ + L P G Sbjct: 1 MFDIFLYTGLRRGDAARLGRQHVRDGIITLDTEKTGVRVTLPVLPELQATLDAGPTGDLA 60 Query: 255 FFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWK 314 F M F+ AGV KSAHG+RK +AT +A+ GAT +L A +GW+ Sbjct: 61 FIATASGNPMAKESVGTLFREACLAAGVRKSAHGLRKAAATNAANHGATVAQLEAIFGWE 120 Query: 315 TVDQAETYTKGADRIRLGIKNSRRISSV 342 A YT+ A+R L ++S Sbjct: 121 GGRMASLYTRSANRKFLAASAMSKLSRT 148 >gi|77457252|ref|YP_346757.1| site-specific tyrosine recombinase XerD [Pseudomonas fluorescens Pf0-1] gi|77381255|gb|ABA72768.1| integrase/recombinase [Pseudomonas fluorescens Pf0-1] Length = 298 Score = 164 bits (415), Expect = 2e-38, Method: Composition-based stats. Identities = 59/290 (20%), Positives = 114/290 (39%), Gaps = 30/290 (10%) Query: 74 LISEYRKSAHW--GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH-----IRSGVESR 126 LI ++ A W L+ N+R ++ S D I + + Sbjct: 8 LIDQFL-DALWLEKGLSDNTRDAYRSDLALFNGWLQDKGLELINAGRELILDHLAWRLEQ 66 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + P S +FL+ +R +++ +R++ ++++P L V+ P+ + ++ D++ Sbjct: 67 NYKPRSTARFLSGVRGFYRYLLREKLISVDPTLRVDMPQLGRPLPKSLSEADVEALLKAP 126 Query: 187 S----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI---------- 232 G + R E L GLR ++ ++ + ++ G+ Sbjct: 127 DLSEAIGQRDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKERLVPMGEEA 186 Query: 233 -ITVE--LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AH 287 + VE L DG +LL P + F + ++M F K +A AG++KS H Sbjct: 187 IVWVERYLRDGRGELLGGRPS--DVLFPSQRGEQMTRQTFWHRIKHQAKVAGISKSLSPH 244 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 +R AT + GA + G + + YT A R RL +++ Sbjct: 245 TLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-RARLQDLHAK 293 >gi|28868685|ref|NP_791304.1| integrase/recombinase XerD [Pseudomonas syringae pv. tomato str. DC3000] gi|28851924|gb|AAO54999.1| integrase/recombinase XerD [Pseudomonas syringae pv. tomato str. DC3000] gi|331016306|gb|EGH96362.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 298 Score = 164 bits (415), Expect = 2e-38, Method: Composition-based stats. Identities = 55/289 (19%), Positives = 114/289 (39%), Gaps = 28/289 (9%) Query: 74 LISEYRKSAHW--GSLAVNSRISFESYFD----QIIRKSGDFDY--RKITTKHIRSGVES 125 LI + A W L+ N+R S+ S + ++ D R++ H+ + Sbjct: 8 LIDRFL-DALWLEKGLSDNTRDSYRSDLALFNGWLQERNVDLPGAGREVILDHL-AWRVE 65 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + P S +FL+ R +++ +R++ ++++P L ++ P+ + ++ D++ + Sbjct: 66 NAYKPRSTARFLSGARGFYRYLLREKLISVDPTLQIDMPQLGKPLPKSLSEADVEALLAA 125 Query: 186 ----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-IITVELPDG 240 G + R E L GLR ++ ++ + ++ G+ V + + Sbjct: 126 PDLSEPIGERDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKERLVPMGEE 185 Query: 241 FMKLLAMTPIGK----------ETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHG 288 + + G + F + +M F K +AT AG+ KS H Sbjct: 186 AIVWVERYMRGARDELLGGKPSDVLFPSTRGDQMTRQTFWHRIKHQATVAGIGKSLSPHT 245 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 +R AT + GA + G + + YT A R RL +++ Sbjct: 246 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-RARLQEMHAK 293 >gi|322381748|ref|ZP_08055702.1| site-specific tyrosine recombinase XerD-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321154136|gb|EFX46458.1| site-specific tyrosine recombinase XerD-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 298 Score = 164 bits (414), Expect = 2e-38, Method: Composition-based stats. Identities = 52/263 (19%), Positives = 104/263 (39%), Gaps = 24/263 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRK---HTPSSAIQFLT 138 LA N+ S++ Q G + + H+ + + + K P++ + L Sbjct: 16 RRLAPNTVESYKKDLAQYADFLSSEGILAWEETQRVHVITYMNNLKQLGRAPATISRTLV 75 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRL 194 S+R L+ + +R++ + ++P VE PK +T+ T E+M + G+ + + Sbjct: 76 SIRALYHYLIREQVMTLDPSGQVESPKAETKIPVILTVEEMDNLLGVPNTGTSSGLRDKA 135 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVEL-----------PDGFM 242 E L +G+R S+ + ++ ++ TG V + + Sbjct: 136 MLELLYATGIRVSELITLNKGDIYADLGYVRCTGTGGKERIVPMGKVATLWIQRYLNEAR 195 Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300 + L + F+N+ +M F K AT+AG++K + H +R AT + Sbjct: 196 EALLKEGKPDKALFLNHIGTRMTRQGFWKMMKKYATEAGIHKEITPHTLRHSFATHLLEN 255 Query: 301 GATAHELMATYGWKTVDQAETYT 323 GA + G + + YT Sbjct: 256 GADLRAVQELLGHSDLSTTQRYT 278 >gi|330807709|ref|YP_004352171.1| Site-specific tyrosine recombinase XerD [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327375817|gb|AEA67167.1| Site-specific tyrosine recombinase XerD [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 298 Score = 164 bits (414), Expect = 2e-38, Method: Composition-based stats. Identities = 59/290 (20%), Positives = 114/290 (39%), Gaps = 30/290 (10%) Query: 74 LISEYRKSAHW--GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH-----IRSGVESR 126 LI ++ A W L+ N+R ++ S + I + + Sbjct: 8 LIDQFL-DALWLEKGLSDNTRDAYRSDLALFNGWLQENHLELINAGRELILDHLAWRLEQ 66 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + P S +FL+ +R +++ +R++ +A++P L VE P+ + ++ D++ + Sbjct: 67 NYKPRSTARFLSGLRGFYRYLLREKLIAVDPTLRVEMPQLGRPLPKSLSEADVEALLAAP 126 Query: 187 S----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI---------- 232 G + R E L GLR ++ ++ + ++ G+ Sbjct: 127 DLSEAIGQRDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKERLVPMGEEA 186 Query: 233 -ITVE--LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AH 287 + VE + D +LL P + F + ++M F K +A AG+NKS H Sbjct: 187 IVWVERYMRDARHELLGGRPS--DVLFPSLRGEQMTRQTFWHRIKHQAKVAGINKSLSPH 244 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 +R AT + GA + G + + YT A R RL +++ Sbjct: 245 TLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-RARLQDLHAK 293 >gi|330895934|gb|EGH28218.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv. japonica str. M301072PT] Length = 298 Score = 164 bits (414), Expect = 2e-38, Method: Composition-based stats. Identities = 55/288 (19%), Positives = 109/288 (37%), Gaps = 26/288 (9%) Query: 74 LISEYRKSAHW--GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH-----IRSGVESR 126 LI + A W L+ N+R S+ S + + I+ + Sbjct: 8 LIDRFL-DALWLEKGLSDNTRDSYRSDLALFNGWLQERNVDLISAGREVILDHLAWRVEN 66 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF- 185 + P S +FL+ +R +++ +R++ ++++P L ++ P+ + ++ D++ + Sbjct: 67 AYKPRSTARFLSGVRGFYRYLLREKLISVDPTLQIDMPQLGKPLPKSLSEADVEALLAAP 126 Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-IITVELPDG- 240 G + R E L GLR ++ ++ + ++ G+ V + + Sbjct: 127 DLSEPIGERDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKERLVPMGEES 186 Query: 241 -------FMKLLAMTPIGKET--FFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGV 289 GK + F + +M F K +AT AG+ KS H + Sbjct: 187 IVWVERYLRGARDELLGGKPSDVLFPSTRGDQMTRQTFWHRIKHQATVAGIGKSLSPHTL 246 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 R AT + GA + G + + YT A R RL ++R Sbjct: 247 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-RARLQELHAR 293 >gi|330985052|gb|EGH83155.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv. lachrymans str. M301315] Length = 298 Score = 164 bits (414), Expect = 2e-38, Method: Composition-based stats. Identities = 55/289 (19%), Positives = 114/289 (39%), Gaps = 28/289 (9%) Query: 74 LISEYRKSAHW--GSLAVNSRISFESYFD----QIIRKSGDFDY--RKITTKHIRSGVES 125 LI + A W L+ N+R S+ S + ++ D R++ H+ + Sbjct: 8 LIDRFL-DALWLEKGLSDNTRDSYRSDLALFNGWLQERNVDLPSAGREVILDHL-AWRVE 65 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + P S +FL+ R +++ +R++ ++++P L ++ P+ + ++ D++ + Sbjct: 66 NAYKPRSTARFLSGARGFYRYLLREKLISVDPTLQIDMPQLGKPLPKSLSEADVEALLAA 125 Query: 186 ----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-IITVELPDG 240 G + R E L GLR ++ ++ + ++ G+ V + + Sbjct: 126 PDLSEPIGERDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKERLVPMGEE 185 Query: 241 FMKLLAMTPIGK----------ETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHG 288 + + G + F + +M F K +AT AG+ KS H Sbjct: 186 AIVWVERYLRGARDELLGGKPSDVLFPSTRGDQMTRQTFWHRIKHQATVAGIGKSLSPHT 245 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 +R AT + GA + G + + YT A R RL +++ Sbjct: 246 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-RARLQELHAK 293 >gi|330872807|gb|EGH06956.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 298 Score = 163 bits (413), Expect = 3e-38, Method: Composition-based stats. Identities = 57/289 (19%), Positives = 115/289 (39%), Gaps = 28/289 (9%) Query: 74 LISEYRKSAHW--GSLAVNSRISFESYFD----QIIRKSGDFDY--RKITTKHIRSGVES 125 LI + A W L+ N+R S+ S + ++ D R++ H+ V+ Sbjct: 8 LIDRFL-DALWLEKGLSDNTRDSYRSDLALFNGWLQERNVDLPSAGREVILDHLAWRVD- 65 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + P S +FL+ R +++ +R++ +A++P L ++ P+ + ++ D++ + Sbjct: 66 NAYKPRSTARFLSGARGFYRYLLREKLIAVDPTLQIDMPQLGKPLPKSLSEADVEALLAA 125 Query: 186 ----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-IITVELPDG 240 G + R E L GLR ++ ++ + ++ G+ V + + Sbjct: 126 PDLSEPIGERDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKERLVPMGEE 185 Query: 241 FMKLLAMTPIGK----------ETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHG 288 + + G + F + +M F K +AT AG+ KS H Sbjct: 186 AIVWVERYMRGARDELLGGKPSDVLFPSTRGDQMTRQTFWHRIKHQATVAGIGKSLSPHT 245 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 +R AT + GA + G + + YT A R RL +++ Sbjct: 246 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-RARLQEMHAK 293 >gi|313500307|gb|ADR61673.1| XerD [Pseudomonas putida BIRD-1] Length = 298 Score = 163 bits (413), Expect = 3e-38, Method: Composition-based stats. Identities = 58/289 (20%), Positives = 113/289 (39%), Gaps = 28/289 (9%) Query: 74 LISEYRKSAHW--GSLAVNSRISFESYFD----QIIRKSGDFDY--RKITTKHIRSGVES 125 LI ++ A W L+ N+R+S+ S + S R + H+ ++ Sbjct: 8 LIDQFL-DALWLEKGLSDNTRVSYRSDLALFNGWLQEHSVSLPDAGRDLILDHLAWRLD- 65 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + + P S +FL+ +R F++ +R++ VAI+P L V+ P+ + ++ D++ Sbjct: 66 QGYKPRSTARFLSGLRGFFRYLLREKLVAIDPTLQVDMPQLGKPLPKSLSEADVEALLQA 125 Query: 186 WS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-IITVELPDG 240 G + R E L GLR ++ + + ++ G+ V + + Sbjct: 126 PDLGEAIGQRDRAMLEVLYACGLRVTELVSLTLDQVNLRQGVLRVMGKGSKERLVPMGEE 185 Query: 241 FMKLLAMTPIGK----------ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHG 288 + L + F + ++M F K A AG++K S H Sbjct: 186 AVVWLDRYQRDGRAELLNGRPSDVLFPSQRGEQMTRQTFWHRIKHHARVAGIDKPLSPHT 245 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 +R AT + GA + G + + YT A + RL +++ Sbjct: 246 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-KARLQQLHAQ 293 >gi|299142044|ref|ZP_07035178.1| tyrosine recombinase XerD [Prevotella oris C735] gi|298576506|gb|EFI48378.1| tyrosine recombinase XerD [Prevotella oris C735] Length = 307 Score = 163 bits (413), Expect = 3e-38, Method: Composition-based stats. Identities = 47/277 (16%), Positives = 95/277 (34%), Gaps = 25/277 (9%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQI-----IRKSGDFDYRKITTKHIRSGVES 125 ++ Y + + + N+ ++ + + +H + + Sbjct: 9 ANVLKSYLRYLKLERNYSQNTLDAYSHDITWLMDYCKREGLEMTALQLEDLQHFAATLHE 68 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + P S + L+ +R +++ + Y+ +P +E P + ++ + Sbjct: 69 FQIGPRSQSRILSGIRSFYRFLLLDGYIETDPTELLESPALGQHLPEVLSTAEVDMLEQS 128 Query: 186 W----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPD 239 EG + R E L GLR S+ + L + + K V + Sbjct: 129 IDLSKPEGQRNRAIIEVLFSCGLRVSELVNLKLSQLYLDDGFIRV-LGKGSKERLVPISP 187 Query: 240 GFMK----------LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAH 287 +K L + P ++ F+N + T I K +A +AG+ K S H Sbjct: 188 RAIKELQLWFTDRVHLNIKPGEEDFVFLNRRGHHLTRTMILIMIKRQAEEAGIKKTISPH 247 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 +R AT GA + A G +++ E YT Sbjct: 248 TLRHSFATALLQGGADLRAIQAMLGHESIGTTEIYTH 284 >gi|257487154|ref|ZP_05641195.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv. tabaci ATCC 11528] gi|331009225|gb|EGH89281.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 298 Score = 163 bits (413), Expect = 3e-38, Method: Composition-based stats. Identities = 55/289 (19%), Positives = 114/289 (39%), Gaps = 28/289 (9%) Query: 74 LISEYRKSAHW--GSLAVNSRISFESYFD----QIIRKSGDFDY--RKITTKHIRSGVES 125 LI + A W L+ N+R S+ S + ++ D R++ H+ + Sbjct: 8 LIDRFL-DALWLEKGLSDNTRDSYRSDLALFNGWLQERNVDLPSAGREVILDHL-AWRVE 65 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + P S +FL+ R +++ +R++ ++++P L ++ P+ + ++ D++ + Sbjct: 66 NAYKPRSTARFLSGARGFYRYLLREKLISVDPTLQIDMPQLGKPLPKSLSEADVEALLAA 125 Query: 186 WS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-IITVELPDG 240 G + R E L GLR ++ ++ + ++ G+ V + + Sbjct: 126 PDLSEAIGERDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKERLVPMGEE 185 Query: 241 FMKLLAMTPIGK----------ETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHG 288 + + G + F + +M F K +AT AG+ KS H Sbjct: 186 AIVWVERYLRGARDELLGGKPSDVLFPSTRGDQMTRQTFWHRIKHQATVAGIGKSLSPHT 245 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 +R AT + GA + G + + YT A R RL +++ Sbjct: 246 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-RARLQEMHAK 293 >gi|170723312|ref|YP_001751000.1| site-specific tyrosine recombinase XerD [Pseudomonas putida W619] gi|169761315|gb|ACA74631.1| tyrosine recombinase XerD [Pseudomonas putida W619] Length = 298 Score = 163 bits (413), Expect = 3e-38, Method: Composition-based stats. Identities = 57/289 (19%), Positives = 116/289 (40%), Gaps = 28/289 (9%) Query: 74 LISEYRKSAHW--GSLAVNSRISFES---YFDQIIRKSG---DFDYRKITTKHIRSGVES 125 LI ++ A W L+ N+R+S+ S F+ ++ G R++ H+ ++ Sbjct: 8 LIDQFL-DALWLEKGLSDNTRVSYRSDLALFNGWLQDHGLALPAAGRELILDHLAWRLD- 65 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + + P S +FL+ +R F++ +R++ +A++P L +E P+ + ++ D+ Sbjct: 66 QGYKPRSTARFLSGLRGFFRYLLREKLIAVDPTLQIEMPQLGKPLPKSLSEADVDALLQA 125 Query: 186 WS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-IITVELPDG 240 G + R E L GLR ++ + + ++ G+ V + + Sbjct: 126 PDLGEAIGQRDRAMLEVLYACGLRVTELVSLALDQVNLRQGVLRVMGKGSKERLVPMGEE 185 Query: 241 FMKLLAMTPIGK----------ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHG 288 + L + F + ++M F K A AG++K S H Sbjct: 186 AVLWLERYLRDGRVELLNGRPSDVLFPSLRGEQMTRQTFWHRIKHHARIAGIDKPLSPHT 245 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 +R AT + GA + G + + YT A + RL +++ Sbjct: 246 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-KARLQQLHAQ 293 >gi|26988201|ref|NP_743626.1| site-specific tyrosine recombinase XerD [Pseudomonas putida KT2440] gi|148549459|ref|YP_001269561.1| site-specific tyrosine recombinase XerD [Pseudomonas putida F1] gi|34222835|sp|Q88MV0|XERD_PSEPK RecName: Full=Tyrosine recombinase xerD gi|24982938|gb|AAN67090.1|AE016337_13 integrase/recombinase XerD [Pseudomonas putida KT2440] gi|148513517|gb|ABQ80377.1| tyrosine recombinase XerD subunit [Pseudomonas putida F1] Length = 298 Score = 163 bits (413), Expect = 4e-38, Method: Composition-based stats. Identities = 58/289 (20%), Positives = 113/289 (39%), Gaps = 28/289 (9%) Query: 74 LISEYRKSAHW--GSLAVNSRISFESYFD----QIIRKSGDFDY--RKITTKHIRSGVES 125 LI ++ A W L+ N+R+S+ S + S R + H+ ++ Sbjct: 8 LIDQFL-DALWLEKGLSDNTRVSYRSDLALFNGWLQEHSVSLPDAGRDLILDHLAWRLD- 65 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + + P S +FL+ +R F++ +R++ VAI+P L V+ P+ + ++ D++ Sbjct: 66 QGYKPRSTARFLSGLRGFFRYLLREKLVAIDPTLQVDMPQLGKPLPKSLSEADVEALLQA 125 Query: 186 WS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-IITVELPDG 240 G + R E L GLR ++ + + ++ G+ V + + Sbjct: 126 PDLGEAIGQRDRAMLEVLYACGLRVTELVSLTLDQVNLRQGVLRVMGKGSKERLVPMGEE 185 Query: 241 FMKLLAMTPIGK----------ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHG 288 + L + F + ++M F K A AG++K S H Sbjct: 186 AVVWLERYQRDGRAELLNGRPSDVLFPSQRGEQMTRQTFWHRIKHHARVAGIDKPLSPHT 245 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 +R AT + GA + G + + YT A + RL +++ Sbjct: 246 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-KARLQQLHAQ 293 >gi|54399934|gb|AAV34206.1| site-specific recombinase [Pseudomonas fluorescens] Length = 298 Score = 163 bits (413), Expect = 4e-38, Method: Composition-based stats. Identities = 59/290 (20%), Positives = 113/290 (38%), Gaps = 30/290 (10%) Query: 74 LISEYRKSAHW--GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH-----IRSGVESR 126 LI ++ A W L+ N+R ++ S + I + + Sbjct: 8 LIDQFL-DALWLEKGLSDNTRDAYRSDLALFNGWLQENHLELINAGRELILDHLAWRLEQ 66 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + P S +FL+ +R +++ +R++ +A++P L VE P+ + ++ D++ + Sbjct: 67 NYKPRSTARFLSGLRGFYRYLLREKLIAVDPTLRVEMPQLGRPLPKSLSEADVEALLAAP 126 Query: 187 S----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI---------- 232 G + R E L GLR ++ ++ + ++ G+ Sbjct: 127 DLSEAIGQRDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKERLVPMGEEA 186 Query: 233 -ITVE--LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AH 287 + VE + D +LL P F + ++M F K +A AG+NKS H Sbjct: 187 IVWVERYVRDARHELLGGRPSDA--LFPSLRGEQMTRQTFWHRIKHQAKVAGINKSLSPH 244 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 +R AT + GA + G + + YT A R RL +++ Sbjct: 245 TLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-RARLQDLHAK 293 >gi|320323174|gb|EFW79263.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv. glycinea str. B076] gi|320329555|gb|EFW85544.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv. glycinea str. race 4] Length = 298 Score = 163 bits (412), Expect = 4e-38, Method: Composition-based stats. Identities = 55/289 (19%), Positives = 114/289 (39%), Gaps = 28/289 (9%) Query: 74 LISEYRKSAHW--GSLAVNSRISFESYFD----QIIRKSGDFDY--RKITTKHIRSGVES 125 LI + A W L+ N+R S+ S + ++ D R++ H+ + Sbjct: 8 LIDRFL-DALWLEKGLSDNTRDSYRSDLALFNGWLQERNVDLPSAGREVILDHL-AWRVE 65 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + P S +FL+ R +++ +R++ ++++P L ++ P+ + ++ D++ + Sbjct: 66 NAYKPRSTARFLSGARGFYRYLLREKLISVDPTLQIDMPQLGKPLPKSLSEADVEALLAA 125 Query: 186 ----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-IITVELPDG 240 G + R E L GLR ++ ++ + ++ G+ V + + Sbjct: 126 PDLSEPIGERDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKERLVPMGEE 185 Query: 241 FMKLLAMTPIGK----------ETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHG 288 + + G + F + +M F K +AT AG+ KS H Sbjct: 186 AIVWVERYLRGARDELLGGKPSDVLFPSTRGDQMTRQTFWHRIKHQATVAGIGKSLSPHT 245 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 +R AT + GA + G + + YT A R RL +++ Sbjct: 246 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHLA-RARLQELHAK 293 >gi|296133169|ref|YP_003640416.1| tyrosine recombinase XerD [Thermincola sp. JR] gi|296031747|gb|ADG82515.1| tyrosine recombinase XerD [Thermincola potens JR] Length = 295 Score = 163 bits (412), Expect = 4e-38, Method: Composition-based stats. Identities = 51/278 (18%), Positives = 113/278 (40%), Gaps = 26/278 (9%) Query: 72 KWLISE--YRKSAHWGSLAVNSRISFESYFDQIIR---KSGDFDYRKITTKHIRSGV--- 123 K LI E Y + LA N+ S+ ++ K G + ++ + + Sbjct: 2 KALIEEFIYYLTVE-RGLAENTLESYARDLERYSAFLSKHGITKFEATNKTNVMAYLLHL 60 Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ--- 180 + + S+ + L S++ +++ +R++++ +P +++E PK + + R + E+++ Sbjct: 61 QKQGKATSTISRHLASLKSFYQYLLREKHIEQDPTVNLESPKLQKKLPRVLSVEEVEILL 120 Query: 181 -QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELP 238 Q + GS+ + E L +G+R S+ + H+ + ++ K + + Sbjct: 121 NQPRLNEPAGSRDKAMLELLYATGIRVSELISLDLDHVNLEMGYVRCFGKGSKERIIPIG 180 Query: 239 DGFMKLLA----------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SA 286 K + + G+ F+N+ ++M F K A +AG+ K + Sbjct: 181 SLAKKYVEEYLHRGRVRLIKSKGETALFVNHHGRRMTRQGFWKIIKKYAREAGIKKDITP 240 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R AT + GA + G + + YT Sbjct: 241 HTLRHSFATHLLENGADLRSVQEMLGHADITTTQIYTH 278 >gi|312962849|ref|ZP_07777336.1| integrase/recombinase XerD [Pseudomonas fluorescens WH6] gi|311282876|gb|EFQ61470.1| integrase/recombinase XerD [Pseudomonas fluorescens WH6] Length = 298 Score = 163 bits (412), Expect = 4e-38, Method: Composition-based stats. Identities = 51/288 (17%), Positives = 107/288 (37%), Gaps = 26/288 (9%) Query: 74 LISEYRKSAHW--GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH-----IRSGVESR 126 LI + A W L+ N+R ++ S + I + + Sbjct: 8 LIDRFL-DALWLEKGLSDNTRQAYRSDLALFNGWLQEKHLELINAGRELILDHLAWRLEQ 66 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + P S +FL+ +R +++ +R++ + ++P L ++ P+ + ++ D++ + Sbjct: 67 NYKPRSTARFLSGVRGFYRYLLREKLITLDPTLQIDMPQLGRPLPKSLSEADVEALLAAP 126 Query: 187 S----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI---------- 232 G + R E L GLR ++ ++ + ++ G+ Sbjct: 127 DLSEAIGQRDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKERLVPMGEEA 186 Query: 233 -ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289 + VE + + + F + ++M F K +A AG+ K S H + Sbjct: 187 IVWVERYMREARSELLGGRPSDVLFPSLRGEQMTRQTFWHRIKHQAKVAGIGKTLSPHTL 246 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 R AT + GA + G + + YT A R RL +++ Sbjct: 247 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-RARLQDMHAK 293 >gi|330950740|gb|EGH51000.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae Cit 7] Length = 298 Score = 163 bits (412), Expect = 4e-38, Method: Composition-based stats. Identities = 54/288 (18%), Positives = 109/288 (37%), Gaps = 26/288 (9%) Query: 74 LISEYRKSAHW--GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH-----IRSGVESR 126 LI + A W L+ N+R S+ S + + I+ + Sbjct: 8 LIDRFL-DALWLEKGLSDNTRDSYRSDLALFNGWLQERNVDLISAGREVILDHLAWRVEN 66 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF- 185 + P S +FL+ R +++ +R++ ++++P L ++ P+ + ++ D++ + Sbjct: 67 AYKPRSTARFLSGARGFYRYLLREKLISVDPTLQIDMPQLGKPLPKSLSEADVEALLAAP 126 Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-IITVELPDG- 240 G + R E L GLR ++ ++ + ++ G+ V + + Sbjct: 127 DLSEPIGERDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKERLVPMGEES 186 Query: 241 -------FMKLLAMTPIGKET--FFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGV 289 GK + F ++ +M F K +AT AG+ KS H + Sbjct: 187 IVWVERYLRGARDELLGGKPSDVLFPSSRGDQMTRQTFWHRIKHQATVAGIGKSLSPHTL 246 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 R AT + GA + G + + YT A R RL +++ Sbjct: 247 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-RARLQELHAK 293 >gi|330975463|gb|EGH75529.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 298 Score = 163 bits (412), Expect = 4e-38, Method: Composition-based stats. Identities = 54/288 (18%), Positives = 108/288 (37%), Gaps = 26/288 (9%) Query: 74 LISEYRKSAHW--GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH-----IRSGVESR 126 LI + A W L+ N+R S+ S + + I+ + Sbjct: 8 LIDRFL-DALWLEKGLSDNTRDSYRSDLALFNGWLQERNVDLISAGREVILDHLAWRVEN 66 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF- 185 + P S +FL+ R +++ +R++ ++++P L ++ P+ + ++ D++ + Sbjct: 67 AYKPRSTARFLSGARGFYRYLLREKLISVDPTLQIDMPQLGKPLPKSLSEADVEALLAAP 126 Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-IITVELPDG- 240 G + R E L GLR ++ ++ + ++ G+ V + + Sbjct: 127 DLSEPIGERDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKERLVPMGEES 186 Query: 241 -------FMKLLAMTPIGKET--FFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGV 289 GK + F + +M F K +AT AG+ KS H + Sbjct: 187 IVWVERYLRGARDELLGGKPSDVLFPSTRGDQMTRQTFWHRIKHQATVAGIGKSLSPHTL 246 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 R AT + GA + G + + YT A R RL +++ Sbjct: 247 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-RARLQELHAK 293 >gi|330894535|gb|EGH27196.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv. mori str. 301020] Length = 298 Score = 163 bits (412), Expect = 4e-38, Method: Composition-based stats. Identities = 55/289 (19%), Positives = 113/289 (39%), Gaps = 28/289 (9%) Query: 74 LISEYRKSAHW--GSLAVNSRISFESYFD----QIIRKSGDFDY--RKITTKHIRSGVES 125 LI + A W L+ N+R S+ S + ++ D R++ H+ + Sbjct: 8 LIDRFL-DALWLEKGLSDNTRESYRSDLALFNGWLQERNVDLPSAGREVILDHL-AWRVE 65 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + P S +FL+ R +++ +R++ + ++P L ++ P+ + ++ D++ + Sbjct: 66 NAYKPRSTARFLSGARGFYRYLLREKLITLDPTLQIDMPQLGKPLPKSLSEADVEALLAA 125 Query: 186 ----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-IITVELPDG 240 G + R E L GLR ++ ++ + ++ G+ V + + Sbjct: 126 PDLSEPTGERDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKERLVPMGEE 185 Query: 241 FMKLLAMTPIGK----------ETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHG 288 + + G + F + +M F K +AT AG+ KS H Sbjct: 186 AIVWVERYLRGARDELLGGKPSDVLFPSTRGDQMTRQTFWHRIKHQATVAGIGKSLSPHT 245 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 +R AT + GA + G + + YT A R RL +++ Sbjct: 246 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-RARLQEMHAK 293 >gi|227889862|ref|ZP_04007667.1| integrase-recombinase [Lactobacillus johnsonii ATCC 33200] gi|227849726|gb|EEJ59812.1| integrase-recombinase [Lactobacillus johnsonii ATCC 33200] Length = 296 Score = 163 bits (412), Expect = 4e-38, Method: Composition-based stats. Identities = 46/284 (16%), Positives = 107/284 (37%), Gaps = 25/284 (8%) Query: 75 ISEYRK-SAHWGSLAVNSRISFESYFDQIIRKSGDFD-----YRKITTKHIRSGVESRKH 128 + +Y + S L+ N+ +S+ + ++ + D + + + + + Sbjct: 5 LEDYLRFSQVERGLSPNTIVSYRTDLEEYLSYLEDQNETSWEVDYLVVDSFLATQKDKGK 64 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF--- 185 +S + ++S+R ++W +RQ+ + +P + ++ PK + ++E++ + Sbjct: 65 ATTSISRMISSLRKFYQWLLRQDIIERDPLVKIDSPKSERRLPTALSEEEVTKLLDAPDT 124 Query: 186 -WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMK 243 S G + R E L +G+R S+ + + + I+ K V + + + Sbjct: 125 NTSLGIRDRAMLEVLYATGMRVSELINLRTGDIHSELKIIRVLGKGSKERLVPITEVALS 184 Query: 244 LL----------AMTPIGKET--FFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289 L + G+ T F+NN ++ K G+ K + H + Sbjct: 185 WLEKYQKDVRENQVLKSGQFTDVIFLNNHGHQLTRQAVWQKIKKYCQLIGITKNVTPHTL 244 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 R AT + GA + G + + YT + L + Sbjct: 245 RHTFATHLLENGADLRVVQEILGHSDITTTQIYTNLTQKHILEV 288 >gi|229592394|ref|YP_002874513.1| site-specific tyrosine recombinase XerD [Pseudomonas fluorescens SBW25] gi|229364260|emb|CAY51975.1| integrase/recombinase [Pseudomonas fluorescens SBW25] Length = 298 Score = 162 bits (411), Expect = 5e-38, Method: Composition-based stats. Identities = 58/290 (20%), Positives = 112/290 (38%), Gaps = 30/290 (10%) Query: 74 LISEYRKSAHW--GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH-----IRSGVESR 126 LI + A W L+ N+R ++ S + + I + + Sbjct: 8 LIDRFL-DALWLEKGLSDNTRQAYRSDLALFNGWLQEKNLELINAGRELILDHLAWRLEQ 66 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + P S +FL+ +R +++ +R++ +A++P L VE P+ + ++ D+ + Sbjct: 67 NYKPRSTARFLSGVRGFYRYLLREKLIALDPTLQVEMPQLGRPLPKSLSEADVDALLAAP 126 Query: 187 S----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI---------- 232 G + R E L GLR ++ ++ + ++ G+ Sbjct: 127 DLSEAIGQRDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKERLVPMGEEA 186 Query: 233 -ITVE--LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAH 287 + VE + D +LL P + F + ++M F K +A AG+ K S H Sbjct: 187 IVWVERYMRDARGELLGGRPS--DVLFPSLRGEQMTRQTFWHRIKHQAKVAGIGKALSPH 244 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 +R AT + GA + G + + YT A R RL +++ Sbjct: 245 TLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-RARLQDMHAK 293 >gi|330969023|gb|EGH69089.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv. aceris str. M302273PT] Length = 298 Score = 162 bits (411), Expect = 5e-38, Method: Composition-based stats. Identities = 56/288 (19%), Positives = 108/288 (37%), Gaps = 26/288 (9%) Query: 74 LISEYRKSAHW--GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH-----IRSGVESR 126 LI + A W L+ N+R S+ S + + I+ + Sbjct: 8 LIDRFL-DALWLEKGLSDNTRDSYRSDLALFNGWLQERNVDLISAGREVILDHLAWRVEN 66 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF- 185 + P S +FL+ R +++ +R++ +A++P L ++ P+ + ++ D++ + Sbjct: 67 AYKPRSTARFLSGARGFYRYLLREKLIAVDPTLQIDMPQLGKPLPKSLSEADVEALLAAP 126 Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-IITVELPDG- 240 G + R E L GLR ++ ++ + ++ G+ V + + Sbjct: 127 DLSEPIGERDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKERLVPMGEES 186 Query: 241 -------FMKLLAMTPIGK--ETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGV 289 GK + F + +M F K +AT AG+ KS H + Sbjct: 187 IVWVERYLRGARDELLGGKPSDVLFPSTRGDQMTRQTFWHRIKHQATVAGIGKSLSPHTL 246 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 R AT + GA + G + + YT A R RL ++R Sbjct: 247 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-RARLQEMHAR 293 >gi|268319602|ref|YP_003293258.1| tyrosine recombinase xerD [Lactobacillus johnsonii FI9785] gi|262397977|emb|CAX66991.1| tyrosine recombinase xerD [Lactobacillus johnsonii FI9785] Length = 302 Score = 162 bits (411), Expect = 6e-38, Method: Composition-based stats. Identities = 48/288 (16%), Positives = 110/288 (38%), Gaps = 27/288 (9%) Query: 75 ISEYRK-SAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK------ITTKHIRSGVESRK 127 + +Y + S L+ N+ +S+ + ++ + D + + + + + + K Sbjct: 11 LEDYLRFSQVERGLSPNTIVSYRTDLEEYLSYLEDQNEKSWEVDYLVVDAFLATQKDKGK 70 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 T +S + ++S+R ++W +RQ+ + +P + ++ PK + ++E++ + Sbjct: 71 AT-TSISRMISSLRKFYQWLLRQDIIERDPLVKIDSPKSERRLPTALSEEEVTKLLDAPD 129 Query: 188 ----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFM 242 G + R E L +G+R S+ + + + I+ K V + + + Sbjct: 130 TNTRLGIRDRAMLEVLYATGMRVSELINLRTGDIHSELKIIRVLGKGSKERLVPITEVAL 189 Query: 243 KLL----------AMTPIGKET--FFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHG 288 L + G+ T F+NN ++ K G+ K + H Sbjct: 190 SWLEKYQKDVRENQVLKSGQFTDVIFLNNHGHQLTRQAVWQKIKKYCQLIGITKNVTPHT 249 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336 +R AT + GA + G + + YT + L + N Sbjct: 250 LRHTFATHLLENGADLRVVQEILGHSDITTTQIYTNLTQKHILEVYNQ 297 >gi|27383115|ref|NP_774644.1| site-specific integrase/recombinase [Bradyrhizobium japonicum USDA 110] gi|27356289|dbj|BAC53269.1| blr8004 [Bradyrhizobium japonicum USDA 110] Length = 373 Score = 162 bits (410), Expect = 6e-38, Method: Composition-based stats. Identities = 58/362 (16%), Positives = 111/362 (30%), Gaps = 35/362 (9%) Query: 12 TKERTRHGKII-YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70 K+R G Y + + G+ ++ P FI +Y +A G T Sbjct: 11 VKKRLADGSTKTYRYHRATGKLLQ-GEPGSPEFIESYGAAARGQK------RPQTASSDT 63 Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE------ 124 L+ +Y+ S + LA ++ + + + G + + Sbjct: 64 FAALVVKYKASEVFKLLADRTQSEYARLLKAVESEFGTLPSSALNDPDVLGDFLEYQDAV 123 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 ++ A L + + WA ++ + N +R W E + F Sbjct: 124 AKASGAREADNRLAATSAMLTWAKDRKNIRFNHLRGFKRLHYADRSEILWLPEHVLAFMD 183 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK------TGTIITVELP 238 QP A ++ LR SD ++ ++ K G ++ + Sbjct: 184 KAEPELQP--ALILAAHTALRESDLLGLKWTAYRDGCLVVRISKSRRNRGNGRLVDIPCT 241 Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK----------SAH- 287 ++L P E ++ FS + AG++K S H Sbjct: 242 KSLRQMLDKMPRTSEYILTTRTNRRFKIRYFSRLWHETMVAAGIDKIKLEGVEEPVSLHF 301 Query: 288 -GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR-LGIKNSRRISSVVDS 345 +R + T+ ++AG T E+ G K R + L K + S + Sbjct: 302 NDLRGTAITLLSEAGCTPQEIATITGHSLKYVNHILEKYLARTKGLARKAIEKFESSPSA 361 Query: 346 DD 347 Sbjct: 362 QF 363 >gi|289675164|ref|ZP_06496054.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv. syringae FF5] Length = 298 Score = 162 bits (410), Expect = 6e-38, Method: Composition-based stats. Identities = 55/288 (19%), Positives = 108/288 (37%), Gaps = 26/288 (9%) Query: 74 LISEYRKSAHW--GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH-----IRSGVESR 126 LI + A W L+ N+R S+ S + + I+ + Sbjct: 8 LIDRFL-DALWLEKGLSDNTRDSYRSDLALFNGWLQERNVDLISAGREVILDHLAWRVEN 66 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF- 185 + P S +FL+ R +++ +R++ ++++P L ++ P+ + ++ D++ + Sbjct: 67 AYKPRSTARFLSGARGFYRYLLREKLISVDPTLQIDMPQLGKPLPKSLSEADVEALLAAP 126 Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-IITVELPDG- 240 G + R E L GLR ++ ++ + ++ G+ V + + Sbjct: 127 DLSEPIGERDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKERLVPMGEES 186 Query: 241 -------FMKLLAMTPIGK--ETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGV 289 GK + F + +M F K +AT AG+ KS H + Sbjct: 187 IVWVERYLRGARDELLGGKPSDVLFPSTRGDQMTRQTFWHRIKHQATVAGIGKSLSPHTL 246 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 R AT + GA + G + + YT A R RL ++R Sbjct: 247 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-RARLQELHAR 293 >gi|70728483|ref|YP_258232.1| site-specific tyrosine recombinase XerD [Pseudomonas fluorescens Pf-5] gi|68342782|gb|AAY90388.1| tyrosine recombinase XerD [Pseudomonas fluorescens Pf-5] Length = 298 Score = 161 bits (408), Expect = 1e-37, Method: Composition-based stats. Identities = 59/291 (20%), Positives = 120/291 (41%), Gaps = 32/291 (10%) Query: 74 LISEYRKSAHW--GSLAVNSRISFES---YFDQIIRKSG---DFDYRKITTKHIRSGVES 125 LI + A W L+ N+R ++ S F+ +++ G R++ H+ + Sbjct: 8 LIDRFL-DALWLEKGLSDNTRDAYRSDLALFNGWLQEQGLELPRAGRELILDHL-AWRVE 65 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + + P S +FL+ +R +++ +R++ + I+P L ++ P+ + ++ D++ + Sbjct: 66 QAYKPRSTARFLSGVRGFYRYLLREKLIEIDPTLQIDMPQLGRPLPKSLSEADVEALLAA 125 Query: 186 WS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI--------- 232 G + R E L GLR ++ ++ + ++ G+ Sbjct: 126 PDLSEAIGQRDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKERLVPMGEE 185 Query: 233 --ITVE--LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SA 286 + VE + D +LL P + F + ++M F K +A AG+ K S Sbjct: 186 AIVWVERYMRDARAELLGGRPS--DVLFPSLRGEQMTRQTFWHRIKHQAKVAGIGKALSP 243 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 H +R AT + GA + G + + YT A R RL +++ Sbjct: 244 HTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-RARLQDLHAK 293 >gi|42519008|ref|NP_964938.1| integrase/recombinase XerD [Lactobacillus johnsonii NCC 533] gi|41583295|gb|AAS08904.1| integrase/recombinase XerD [Lactobacillus johnsonii NCC 533] Length = 296 Score = 161 bits (408), Expect = 1e-37, Method: Composition-based stats. Identities = 48/288 (16%), Positives = 109/288 (37%), Gaps = 27/288 (9%) Query: 75 ISEYRK-SAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK------ITTKHIRSGVESRK 127 + +Y + S L+ N+ +S+ + ++ + D + + + + + K Sbjct: 5 LEDYLRFSQVERGLSPNTIVSYRTDLEEYLSYLEDQNETSWEVDYLVVDAFLATQKDKGK 64 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 T +S + ++S+R ++W +RQ+ + +P + ++ PK + ++E++ + Sbjct: 65 AT-TSISRMISSLRKFYQWLLRQDIIERDPLVKIDSPKSERRLPTALSEEEVTKLLDAPD 123 Query: 188 ----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFM 242 G + R E L +G+R S+ + + + I+ K V + + + Sbjct: 124 TNTRLGIRDRAMLEVLYATGMRVSELINLRTGDIHSELKIIRVLGKGSKERLVPITEVAL 183 Query: 243 KLL----------AMTPIGKET--FFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHG 288 L + G+ T F+NN ++ K G+ K + H Sbjct: 184 SWLEKYQKDVRENQVLKSGQFTDVIFLNNHGHQLTRQAVWQKIKKYCQLIGITKNVTPHT 243 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336 +R AT + GA + G + + YT + L + N Sbjct: 244 LRHTFATHLLENGADLRVVQEILGHSDITTTQIYTNLTQKHILEVYNQ 291 >gi|66044534|ref|YP_234375.1| site-specific tyrosine recombinase XerD [Pseudomonas syringae pv. syringae B728a] gi|63255241|gb|AAY36337.1| Phage integrase:Phage integrase, N-terminal SAM-like [Pseudomonas syringae pv. syringae B728a] Length = 298 Score = 161 bits (408), Expect = 1e-37, Method: Composition-based stats. Identities = 55/288 (19%), Positives = 108/288 (37%), Gaps = 26/288 (9%) Query: 74 LISEYRKSAHW--GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH-----IRSGVESR 126 LI + A W L+ N+R ++ S + + I+ + Sbjct: 8 LIDRFL-DALWLEKGLSDNTRDAYRSDLALFNGWLQERNVDLISAGREVILDHLAWRVDN 66 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF- 185 + P S +FL+ R +++ +R++ +A++P L ++ P+ + ++ D++ + Sbjct: 67 AYKPRSTARFLSGARGFYRYLLREKLIAVDPTLQIDMPQLGKPLPKSLSEADVEALLAAP 126 Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-IITVELPDG- 240 G + R E L GLR ++ ++ + ++ G+ V + + Sbjct: 127 DLSEPIGERDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKERLVPMGEES 186 Query: 241 -------FMKLLAMTPIGK--ETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGV 289 GK + F + +M F K +AT AG+ KS H + Sbjct: 187 IVWVERYLRGARDELLGGKPSDVLFPSTRGDQMTRQTFWHRIKHQATVAGIGKSLSPHTL 246 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 R AT + GA + G + + YT A R RL ++R Sbjct: 247 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-RARLQEMHAR 293 >gi|167032086|ref|YP_001667317.1| site-specific tyrosine recombinase XerD [Pseudomonas putida GB-1] gi|166858574|gb|ABY96981.1| tyrosine recombinase XerD [Pseudomonas putida GB-1] Length = 298 Score = 161 bits (408), Expect = 1e-37, Method: Composition-based stats. Identities = 57/289 (19%), Positives = 114/289 (39%), Gaps = 28/289 (9%) Query: 74 LISEYRKSAHW--GSLAVNSRISFESYFD----QIIRKSGDFDY--RKITTKHIRSGVES 125 LI ++ A W L+ N+R+S+ S + ++ R++ H+ ++ Sbjct: 8 LIDQFL-DALWLEKGLSDNTRVSYRSDLALFNGWLQEQAVSLPDAGRELILDHLAWRLD- 65 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + + P S +FL+ +R F++ +R+ VAI+P L V+ P+ + ++ D++ Sbjct: 66 QGYKPRSTARFLSGLRGFFRYLLRERLVAIDPTLQVDMPQLGKPLPKSLSEADVEALLQA 125 Query: 186 WS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-IITVELPDG 240 G + R E L GLR ++ + + ++ G+ V + + Sbjct: 126 PDLGEAIGQRDRAMLEVLYACGLRVTELVSLTLDQVNLRQGVLRVMGKGSKERLVPMGEE 185 Query: 241 FMKLLAMTPIGK----------ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHG 288 + L + F + ++M F K A AG++K S H Sbjct: 186 AVVWLERYQRDGRAELLNGRPSDVLFPSLRGEQMTRQTFWHRIKHHARVAGIDKPLSPHT 245 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 +R AT + GA + G + + YT A + RL +++ Sbjct: 246 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-KARLQQLHAQ 293 >gi|299132356|ref|ZP_07025551.1| phage integrase [Afipia sp. 1NLS2] gi|298592493|gb|EFI52693.1| phage integrase [Afipia sp. 1NLS2] Length = 205 Score = 161 bits (408), Expect = 1e-37, Method: Composition-based stats. Identities = 46/174 (26%), Positives = 79/174 (45%), Gaps = 4/174 (2%) Query: 89 VNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAV 148 +R D + G+ Y+ + KHIR ++R P SA F+ ++R +FK+AV Sbjct: 31 AGTRYVRRQVLDNFCAEDGEKPYKLLLPKHIRKRRDARADRPESANAFIKALRQVFKYAV 90 Query: 149 RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSD 208 +YV N +V K K +G W E++++F+ GS RLA ++Y+G R SD Sbjct: 91 DNDYVVSNLAQAVPYLKAKGDGHHTWMLEEVERFERTHPIGSTARLALALMIYTGQRRSD 150 Query: 209 SCRAGVQHLQNNIFSIKTQKTGTI----ITVELPDGFMKLLAMTPIGKETFFIN 258 + G H ++ K + V + +++ T G +T +N Sbjct: 151 AVLLGPNHFKDGWLHFTQFKGRERKPITLDVPILPELQRIIDATACGTDTSLLN 204 >gi|148651956|ref|YP_001279049.1| tyrosine recombinase XerD [Psychrobacter sp. PRwf-1] gi|148571040|gb|ABQ93099.1| tyrosine recombinase XerD [Psychrobacter sp. PRwf-1] Length = 312 Score = 161 bits (407), Expect = 1e-37, Method: Composition-based stats. Identities = 55/298 (18%), Positives = 108/298 (36%), Gaps = 28/298 (9%) Query: 52 TGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDY 111 P++ + +P I+E+R++ L+ +R ++ ++ + Sbjct: 5 RAIQPRQPKALAVDDEP----AYITEFRQAMLARGLSTRTRNAYVRDL-KLCETTHSKAL 59 Query: 112 R---KITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168 + + ++ + TP + + L+S+R + W V E NPC ++ PK Sbjct: 60 TLWSDMDVMQCLTALDRQGKTPRTQARMLSSLRQFYLWMVGNERREDNPCERIKTPKIGR 119 Query: 169 EGIRPWTKEDMQQFKSFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224 + ++ D++ S G + + E L GLR S+ ++ + N + Sbjct: 120 SLPKDLSENDVESLLSAPDTSTALGLRDKAMLEVLYACGLRVSELMNLSLEQVNLNAGWL 179 Query: 225 K-TQKTGTIITVELPD------------GFMKLLAMTPIGK-ETFFINNDKQKMNATQFS 270 + T K V L + +L+A G + F+ M F Sbjct: 180 QITGKGNKTRLVPLGEYASDALDDYLTHARGELVAHLKSGNCQAVFLTTQGGYMTRQNFW 239 Query: 271 IWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 K A +AG+ + S H +R AT + GA + G + + YT A Sbjct: 240 YMIKKYAKQAGIQSDLSPHTLRHAFATHLLNHGADLRSVQLLLGHSDLSTTQIYTHVA 297 >gi|281424791|ref|ZP_06255704.1| tyrosine recombinase XerD [Prevotella oris F0302] gi|281401161|gb|EFB31992.1| tyrosine recombinase XerD [Prevotella oris F0302] Length = 307 Score = 161 bits (407), Expect = 2e-37, Method: Composition-based stats. Identities = 46/277 (16%), Positives = 94/277 (33%), Gaps = 25/277 (9%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQI-----IRKSGDFDYRKITTKHIRSGVES 125 ++ Y + + + N+ ++ + + +H + + Sbjct: 9 ANVLKSYLRYLKLERNYSQNTLDAYSHDITWLMDYCKREGLEVTALQLEDLQHFAATLHE 68 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + P S + L+ +R +++ + Y+ +P +E P + ++ + Sbjct: 69 FQIGPRSQSRILSGIRSFYRFLLLDGYIETDPTELLESPALGQHLPEVLSTAEVDMLEQS 128 Query: 186 WS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPD 239 EG + E L GLR S+ + L + + K V + Sbjct: 129 IDLSKLEGQRNLAIIEVLFSCGLRVSELVNLKLSQLYLDDGFIRV-LGKGSKERLVPISP 187 Query: 240 GFMK----------LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAH 287 +K L + P ++ F+N + T I K +A +AG+ K S H Sbjct: 188 RAIKELQLWFTDRVHLNIKPGEEDFVFLNRRGHHLTRTMILIMIKRQAEEAGIKKTISPH 247 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 +R AT GA + A G +++ E YT Sbjct: 248 TLRHSFATALLQGGADLRAIQAMLGHESIGTTEIYTH 284 >gi|329667457|gb|AEB93405.1| integrase/recombinase XerD [Lactobacillus johnsonii DPC 6026] Length = 296 Score = 161 bits (407), Expect = 2e-37, Method: Composition-based stats. Identities = 48/288 (16%), Positives = 109/288 (37%), Gaps = 27/288 (9%) Query: 75 ISEYRK-SAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK------ITTKHIRSGVESRK 127 + +Y + S L+ N+ +S+ + ++ + D + + + + + K Sbjct: 5 LEDYLRFSQVERGLSPNTIVSYRTDLEEYLSYLEDQNETSWEVDYLVVDAFLATQKDKGK 64 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 T +S + ++S+R ++W +RQ+ + +P + ++ PK + ++E++ + Sbjct: 65 AT-TSISRMISSLRKFYQWLLRQDIIERDPLVKIDSPKSERRLPTALSEEEVTKLLDAPD 123 Query: 188 ----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFM 242 G + R E L +G+R S+ + + + I+ K V + + + Sbjct: 124 TNTRLGIRDRAMLEVLYATGMRVSELINLRTGDIHSELKIIRVLGKGSKERLVPVTEVAL 183 Query: 243 KLL----------AMTPIGKET--FFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHG 288 L + G+ T F+NN ++ K G+ K + H Sbjct: 184 SWLEKYQKDVRENQVLKSGQFTDVIFLNNHGHQLTRQAVWQKIKKYCQLIGITKNVTPHT 243 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336 +R AT + GA + G + + YT + L + N Sbjct: 244 LRHTFATHLLENGADLRVVQEILGHSDITTTQIYTNLTQKHILEVYNQ 291 >gi|192360546|ref|YP_001981926.1| tyrosine recombinase XerD [Cellvibrio japonicus Ueda107] gi|190686711|gb|ACE84389.1| tyrosine recombinase XerD [Cellvibrio japonicus Ueda107] Length = 299 Score = 160 bits (406), Expect = 2e-37, Method: Composition-based stats. Identities = 52/276 (18%), Positives = 98/276 (35%), Gaps = 24/276 (8%) Query: 85 GSLAVNSRISFESYFDQIIR--KSGDFD----YRKITTKHIRSGVESRKHTPSSAIQFLT 138 L+ N++ S+ +Q +G + + + + S +FL+ Sbjct: 20 KGLSENTQESYRRDLEQFAGWLAAGQGPDLLAVTATEVQAYLAWRHQQHLSSRSTARFLS 79 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRL 194 +R ++ +R+ ++ NP VE PK + ++ D++ S G + + Sbjct: 80 CLRGFYRLQIREGHLHDNPLALVENPKLSRSLPKSLSESDVENLLSAPDVDDPVGLRDKT 139 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-IITVELPDGFMKLLAMTPIGKE 253 E L GLR S+ + + ++ G+ V + + L Sbjct: 140 MLEVLYACGLRVSELVGLTMSQVNLRQNVVRVMGKGSKERLVPMGEEAAAWLQRYLREAR 199 Query: 254 TFFINN----------DKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAG 301 +NN Q M F K A AG+NK S H +R AT + G Sbjct: 200 PVLLNNFPDEVVFPSSRGQPMTRQTFWYRIKHWAQVAGINKPLSPHTLRHAFATHLLNHG 259 Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 A + G + + YT A R+R+ +++ Sbjct: 260 ADLRVVQLLLGHSDLSTTQIYTHVA-RLRMKHQHAE 294 >gi|104783227|ref|YP_609725.1| site-specific tyrosine recombinase XerD [Pseudomonas entomophila L48] gi|95112214|emb|CAK16941.1| site-specific tyrosine recombinase, integrase family [Pseudomonas entomophila L48] Length = 298 Score = 160 bits (406), Expect = 2e-37, Method: Composition-based stats. Identities = 60/291 (20%), Positives = 118/291 (40%), Gaps = 32/291 (10%) Query: 74 LISEYRKSAHW--GSLAVNSRISFES---YFDQIIRKSGDFDY---RKITTKHIRSGVES 125 LI ++ A W L+ N+R S+ S F+ +++ G R++ H+ + Sbjct: 8 LIDQFL-DALWLEKGLSDNTRTSYRSDLALFNGWLQEQGVALPDAGRELILDHLAWRFD- 65 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + + P S +FL+ +R +++ +R+ +A++P L V+ P+ + ++ D++ Sbjct: 66 QAYKPRSTARFLSGVRGFYRYLLRERMIAVDPTLQVDMPQLGRPLPKSLSEADVEALLKA 125 Query: 186 WS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV------ 235 G + R E L GLR ++ + + ++ G+ + Sbjct: 126 PDLGEAIGQRDRAMLEVLYACGLRVTELVSLTLDQVNLRQGVLRVMGKGSKERLVPMGEE 185 Query: 236 -------ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SA 286 L DG +LL P + F + ++M F K A AG++K S Sbjct: 186 AVLWLERYLRDGRAELLNGRPS--DVLFPSLRGEQMTRQTFWHRIKHHARVAGIDKPLSP 243 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 H +R AT + GA + G + + YT A + RL +++ Sbjct: 244 HTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-KARLQQLHAQ 293 >gi|149914829|ref|ZP_01903359.1| Integrase [Roseobacter sp. AzwK-3b] gi|149811622|gb|EDM71457.1| Integrase [Roseobacter sp. AzwK-3b] Length = 308 Score = 160 bits (405), Expect = 3e-37, Method: Composition-based stats. Identities = 60/282 (21%), Positives = 105/282 (37%), Gaps = 14/282 (4%) Query: 70 TLKWLISEYRKSAHWGSL--AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES-R 126 T+ LI + S + ++ + Y + GD R++ +H+ + + Sbjct: 15 TIGALIDAFEVSWATRQRKISKGTQEHYRRYLKPARKAWGDLPARELRPRHVDALIRKIG 74 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 P +A L +++ + WA E + +P VER K EG RPWT + + F Sbjct: 75 ADKPGAANNILDALKAMVSWANGPVELLTHDPTQGVERF-SKGEGHRPWTSQQL-AFAEQ 132 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245 G+ R F Y+G R SD R + + FS+ +KTG + + Sbjct: 133 VFTGT-IRRFFFLSRYTGQRISDVVRLSPNDVDDGGFSLPQKKTGVKPWCPIFPELEAEM 191 Query: 246 AMTPIGKETFFINND----KQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISAD 299 + + + + + Q F + K V HG+R + Sbjct: 192 VTWERRPGPYLLQSSGKSAGKPFSTNQMWKAFDRERKKYSVLSGAVPHGLRANAVIRLRG 251 Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341 G TA ++ G +V+ E+Y++ ADR G R Sbjct: 252 EGYTALQISDMVG-MSVEMVESYSRHADRKASGQAVLREFQE 292 >gi|116513910|ref|YP_812816.1| integrase [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|116093225|gb|ABJ58378.1| tyrosine recombinase XerD subunit [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|325125576|gb|ADY84906.1| Integrase-recombinase [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 298 Score = 160 bits (404), Expect = 3e-37, Method: Composition-based stats. Identities = 46/283 (16%), Positives = 107/283 (37%), Gaps = 24/283 (8%) Query: 75 ISEYRK-SAHWGSLAVNSRISFESYFDQII-----RKSGDFDYRKITTKHIRSGVESRKH 128 I++Y + S L+ N+ +++ + + + + + + Sbjct: 8 INDYLRYSQIERGLSPNTIAAYQQDLLEFLAFVKEEQMPAWPLEAVEIDAFLAKERDLGK 67 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----QQFKS 184 SS + ++++ ++W VRQ+ +A++P ++ PKR+ T+ ++ +Q Sbjct: 68 ANSSISRLVSTLSRFYQWLVRQQLIALDPMSQIDAPKREKRMPLALTEAEVGKLLEQPDL 127 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMK 243 G + R+ E L +G+R S++ + + N+ IK K + + + Sbjct: 128 TTDLGIRDRVLLELLYATGMRVSEAVNLQLADVHANLQLIKVLGKGSKERLIPVSALALD 187 Query: 244 LLAM-TPIGK----------ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290 + P+ + F+N+ ++ K +AG+ K + H +R Sbjct: 188 WIKRYLPVRDQQLLKRGKSSDYLFLNSRGGQLTRQAVWQKIKKYCQQAGIAKDVTPHTLR 247 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 AT + GA + G + + YT + L + Sbjct: 248 HSFATHLLEHGADLRVVQEILGHTDISTTQIYTNLTQKHILDV 290 >gi|119775871|ref|YP_928611.1| integrase/recombinase XerD [Shewanella amazonensis SB2B] gi|119768371|gb|ABM00942.1| integrase/recombinase XerD [Shewanella amazonensis SB2B] Length = 321 Score = 159 bits (403), Expect = 5e-37, Method: Composition-based stats. Identities = 56/307 (18%), Positives = 106/307 (34%), Gaps = 24/307 (7%) Query: 54 STPKREYINSPRKKPTTLKWLISEYRKSA-HWGSLAVNSRISFESYFDQI-----IRKSG 107 + E +P K LI + L+ N+ ++ + Q + G Sbjct: 11 GGKRPEKSGAPLKPSAAGMALIDAFLDELWSLQGLSDNTLSAYRTDLCQFDAFLTAKGIG 70 Query: 108 DFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167 +T + + + +S + L+S+R ++ + ++ +P +E PK Sbjct: 71 LLALDSLTLRDYLAYRFEQGMAKTSTARMLSSLRRFYRHQLVSGTLSEDPTALIESPKLP 130 Query: 168 TEGIRPWTKEDMQQFKSF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS 223 ++ ++Q + + + E L +GLR S+ G+ L Sbjct: 131 KSLPGSLSEAQVEQLLAEPSSDDPVECRDKAMLELLYATGLRVSELVGLGMSELGLRQGL 190 Query: 224 IKT-QKTGTIITVELPDGFMKLLA---MTPIG-------KETFFINNDKQKMNATQFSIW 272 ++ K G V + + L P E F +N Q+M F Sbjct: 191 VRIIGKGGKERLVPMGEVAQDALEQFLAGPRQMLLKQGATEVVFPSNRGQQMTRQTFWHR 250 Query: 273 FKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 K A +AG+ S H +R AT + GA + G ++ + YT A R R Sbjct: 251 IKLYALRAGISTELSPHTLRHAFATHLLNHGADLRVVQLLLGHSSLSTTQIYTHVA-RTR 309 Query: 331 LGIKNSR 337 L + + Sbjct: 310 LADLHEK 316 >gi|104773902|ref|YP_618882.1| site-specific recombinase [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|103422983|emb|CAI97665.1| Site-specific recombinase [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] Length = 298 Score = 159 bits (403), Expect = 5e-37, Method: Composition-based stats. Identities = 46/283 (16%), Positives = 106/283 (37%), Gaps = 24/283 (8%) Query: 75 ISEYRK-SAHWGSLAVNSRISFESYFDQII-----RKSGDFDYRKITTKHIRSGVESRKH 128 I++Y + S L+ N+ +++ + + + + + + Sbjct: 8 INDYLRYSQIERGLSPNTIAAYQQDLLEFLAFVKEEQMPAWPLEAVEIDAFLAKERDLGK 67 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----QQFKS 184 SS + ++++ ++W VRQ+ +A++P ++ PKR+ T+ ++ +Q Sbjct: 68 ANSSISRLVSTLSRFYQWLVRQQLIALDPMSQIDAPKREKRMPLALTEAEVGKLLEQPDL 127 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMK 243 G + R E L +G+R S++ + + N+ IK K + + + Sbjct: 128 TTDLGIRDRALLELLYATGMRVSEAVNLQLADVHANLQLIKVLGKGSKERLIPVSALALD 187 Query: 244 LLAM-TPIGK----------ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290 + P+ + F+N+ ++ K +AG+ K + H +R Sbjct: 188 WIKRYLPVRDQQLLKRGKSSDYLFLNSRGGQLTRQAVWQKIKKYCQQAGIAKDVTPHTLR 247 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 AT + GA + G + + YT + L + Sbjct: 248 HSFATHLLEHGADLRVVQEILGHTDISTTQIYTNLTQKHILDV 290 >gi|303236823|ref|ZP_07323402.1| tyrosine recombinase XerD [Prevotella disiens FB035-09AN] gi|302482991|gb|EFL46007.1| tyrosine recombinase XerD [Prevotella disiens FB035-09AN] Length = 318 Score = 159 bits (403), Expect = 5e-37, Method: Composition-based stats. Identities = 51/290 (17%), Positives = 111/290 (38%), Gaps = 23/290 (7%) Query: 58 REYINSPRKKPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQII-----RKSGDFDY 111 ++Y + ++ +Y++ + + N+ ++ ++++ K + Sbjct: 5 QKYAKKMESNKDSSSNVLRKYQRYLKLEKAYSANTLDAYMRDVEKLLKYLANEKINPEEA 64 Query: 112 RKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171 + ++ + V S + L+ +R F++ V + Y+ +P +E PK+ Sbjct: 65 KLENIENFAAAVGDLGIGARSLARILSGVRQFFRYLVLEGYIEADPTELLESPKQPQHLP 124 Query: 172 RPWTKEDMQQFKSFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ 227 + E++ ++ EG + + E L GLR S+ + +L + ++ Sbjct: 125 EVLSTEEVDSLENAIDLSKWEGHRNKAIIEVLFSCGLRVSELTNLKLSNLYADEQFVRVM 184 Query: 228 KTGT-IITVELPDGFMKLLAMTPIGK----------ETFFINNDKQKMNATQFSIWFKAK 276 G+ V + +K L I + + F+N + T I K Sbjct: 185 GKGSKERLVPISPRALKELNFWFIDRNQMKIKEGEEDFVFLNRRGAHLTRTMILIMIKKY 244 Query: 277 ATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 A +AG+ K S H +R AT + GA + A G +++ E YT Sbjct: 245 AQEAGIKKTISPHTLRHSFATALLEGGADLRAIQAMLGHESIGTTEIYTH 294 >gi|317504379|ref|ZP_07962363.1| integrase/recombinase XerD [Prevotella salivae DSM 15606] gi|315664501|gb|EFV04184.1| integrase/recombinase XerD [Prevotella salivae DSM 15606] Length = 307 Score = 159 bits (402), Expect = 6e-37, Method: Composition-based stats. Identities = 52/277 (18%), Positives = 100/277 (36%), Gaps = 25/277 (9%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIR--KSGDFDYRKITT---KHIRSGVES 125 ++ Y + + + N+ ++ +I K + D + +H + + Sbjct: 9 ANILKAYLRYLKLERNYSPNTLDAYSHDIAWLIDYCKREERDLLGLQLEDLQHFAASLHE 68 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 P S + L+ +R F++ + Y+ +P +E P + E++ + + Sbjct: 69 FHIGPRSQSRILSGIRSFFRFLLLDGYIDNDPTELLESPVLGQHLPEVLSTEEVDRLEES 128 Query: 186 W----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQKTGTIITVELPD 239 EG + R E L GLR S+ + +L + + K V + Sbjct: 129 IDLSKPEGQRNRTIIEVLFSCGLRVSELVHLKLSELYLDDGFIRV-LGKGSKERLVPISP 187 Query: 240 GFMK----------LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAH 287 +K L + P ++ F+N + T I K +A +AG+ K S H Sbjct: 188 RAIKELRLWFADRVHLDIKPGEEDFVFLNRRGHHLTRTMILIMIKRQAEEAGIKKTISPH 247 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 +R AT GA + A G + + E YT Sbjct: 248 TLRHSFATALLQGGADLRAIQAMLGHEHIGTTEIYTH 284 >gi|119470495|ref|ZP_01613198.1| site-specific tyrosine recombinase XerD [Alteromonadales bacterium TW-7] gi|119446196|gb|EAW27473.1| site-specific tyrosine recombinase XerD [Alteromonadales bacterium TW-7] Length = 308 Score = 159 bits (402), Expect = 7e-37, Method: Composition-based stats. Identities = 46/271 (16%), Positives = 95/271 (35%), Gaps = 19/271 (7%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH---TPSSAIQFLTSMR 141 ++ N+ ++ S D+ + + +T I S + R P S + +++++ Sbjct: 33 QGVSENTLSAYRSDLDKFCQFLKGENLMTVTGHDIESYLAHRVDLGLKPRSTARSISALK 92 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAFE 197 +++ VR++ + P L++ +PK + ++ +++ + G + + E Sbjct: 93 RFYQYFVREKMITDTPMLNIAQPKAGQSLPKTLSETEVEALLNAPNTEEPMGLRDKAMLE 152 Query: 198 FLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLL---------AM 247 L +GLR S+ ++ + K V L + M L M Sbjct: 153 LLYATGLRVSELVGLRMEQINLRQAVVFVKGKGNKERLVPLGEEAMHWLELFLKVGRAQM 212 Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAH 305 + F + M F K A A V S H +R AT + GA Sbjct: 213 IKHATDFVFPSKRGVGMTRQTFWHRIKHYAILASVESPLSPHTLRHAFATHLLNHGADLR 272 Query: 306 ELMATYGWKTVDQAETYTKGADRIRLGIKNS 336 + G + + YT A+ + Sbjct: 273 VVQMMLGHSDLSTTQIYTHVANERLKSVHAQ 303 >gi|327312733|ref|YP_004328170.1| putative tyrosine recombinase XerD [Prevotella denticola F0289] gi|326945335|gb|AEA21220.1| putative tyrosine recombinase XerD [Prevotella denticola F0289] Length = 315 Score = 159 bits (401), Expect = 7e-37, Method: Composition-based stats. Identities = 51/276 (18%), Positives = 100/276 (36%), Gaps = 23/276 (8%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQII-----RKSGDFDYRKITTKHIRSGVES 125 K ++ +R+ + N+ ++ D+++ + D +H + V Sbjct: 8 KDIVGRFRRYLKLEKGCSPNTLDAYLHDVDKLLRYLAGEQVSVTDVTLEQLEHFAASVSD 67 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 S + L+S+R +++ V Y+ +P +E PK+ + ++ + Sbjct: 68 LGIGARSLARILSSVRQFYRFLVLDGYMEADPTELLESPKQPDHLPEVLSTAEVDLLEQA 127 Query: 186 WS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-IITVELPDG 240 EG + R E L GLR S+ + L + ++ G+ V + Sbjct: 128 VDLTKWEGHRNRAIIEVLFSCGLRVSELTHLKLSDLYRDEQFVRVMGKGSKERLVPISPR 187 Query: 241 FMKLLAMTPIGK----------ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHG 288 + L + + F+N + T I K A +AG+ K S H Sbjct: 188 ALDELDCWFADRNVMKIKSGEEDYVFLNRRGHHLTRTMILIMIKRYAVEAGIRKTISPHT 247 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 +R AT + GA + A G +++ E YT Sbjct: 248 LRHSFATSLLEGGADLRAIQAMLGHESIGTTEIYTH 283 >gi|77919114|ref|YP_356929.1| site-specific recombinase [Pelobacter carbinolicus DSM 2380] gi|77545197|gb|ABA88759.1| tyrosine recombinase XerD subunit [Pelobacter carbinolicus DSM 2380] Length = 295 Score = 159 bits (401), Expect = 7e-37, Method: Composition-based stats. Identities = 51/276 (18%), Positives = 100/276 (36%), Gaps = 24/276 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTK------HIRSGVESRKHTPSSAIQFLT 138 L+ N+ ++ + + + S ++ R + S + L Sbjct: 16 KGLSANTLDAYGRDLARYLEFLSVKGVTGLEQVSPPMVVAFLSALKERGLSARSRARKLV 75 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRL 194 S+R+ ++ + + NP V PK + + T ++++ S + + + Sbjct: 76 SLRMFHRFLLAENLATTNPAAQVAAPKSFAKLPQILTPDEVESLLSAPGNTTCFDLRDKA 135 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLA------- 246 E L +GLR S+ +Q LQ ++ + K V L D + + Sbjct: 136 MLEILYATGLRVSELVGLTLQDLQLDVGYLTAFGKRAKQRIVPLGDAAREAVLEYLSHGR 195 Query: 247 ---MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAG 301 +G F+N + F K +A +AG+NK + H +R AT D G Sbjct: 196 GELAGEVGSGFLFLNRSGNGLTRQGFWKMMKRRAMEAGINKNITPHTLRHSFATHLLDNG 255 Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 A + A G + + YT R R+ + + + Sbjct: 256 ADLRAVQAMLGHADISTTQIYTH-VTRERMKVIHQQ 290 >gi|325268524|ref|ZP_08135154.1| integrase/recombinase XerD [Prevotella multiformis DSM 16608] gi|324989052|gb|EGC21005.1| integrase/recombinase XerD [Prevotella multiformis DSM 16608] Length = 310 Score = 159 bits (401), Expect = 7e-37, Method: Composition-based stats. Identities = 50/276 (18%), Positives = 101/276 (36%), Gaps = 23/276 (8%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQII-----RKSGDFDYRKITTKHIRSGVES 125 K ++ +R+ + N+ ++ D+++ + D +H + V Sbjct: 8 KDIVGRFRRYLKLEKGCSPNTVDAYLHDVDKLLRYLAGEQVPVTDVTLEQLEHFAASVSD 67 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 S + L+ +R +++ V Y+ +P +E PK+ + ++ + Sbjct: 68 LGIGARSLARILSGVRQFYRFLVLDGYMEADPTELLESPKQPDHLPEVLSTAEVDLLEQA 127 Query: 186 WS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-IITVELPDG 240 EG + R E L GLR S+ + L ++ G+ V + Sbjct: 128 VDLTKWEGHRNRAIIEVLFSCGLRVSELTHLKLSDLYREEQYVRVMGKGSKERLVPISPR 187 Query: 241 FMK----------LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHG 288 + ++ + P ++ F+N + T I K A +AG+ K S H Sbjct: 188 ALDELDCWFADRNVMKIKPGEEDYVFLNRRGHHLTRTMILIMIKRYAAEAGIRKTISPHT 247 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 +R AT + GA + A G +++ E YT Sbjct: 248 LRHSFATSLLEGGADLRAIQAMLGHESIGTTEIYTH 283 >gi|325273831|ref|ZP_08140016.1| site-specific tyrosine recombinase XerD [Pseudomonas sp. TJI-51] gi|324101037|gb|EGB98698.1| site-specific tyrosine recombinase XerD [Pseudomonas sp. TJI-51] Length = 298 Score = 159 bits (401), Expect = 7e-37, Method: Composition-based stats. Identities = 56/288 (19%), Positives = 109/288 (37%), Gaps = 26/288 (9%) Query: 74 LISEYRKSAHW--GSLAVNSRISFESYFDQI-----IRKSGDFDYRKITTKHIRSGVESR 126 LI ++ A W L+ N+R+S+ S R D + + + Sbjct: 8 LIDQFL-DALWLEKGLSDNTRVSYRSDLALFNGWLHERSVALPDAGRDLILDHLAWRLEQ 66 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + P S +F++ +R F++ +R++ VAI+P L V+ P+ + ++ D++ Sbjct: 67 GYKPRSTARFISGLRGFFRYLLREKLVAIDPTLQVDMPQLGKPLPKSLSEADVEALLQAP 126 Query: 187 S----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-IITVELPDGF 241 G + R E L GLR ++ + + ++ G+ V + + Sbjct: 127 DLGEAIGQRDRAMLEVLYACGLRVTELVSLALDQVNLRQGVLRVMGKGSKERLVPMGEEA 186 Query: 242 MKLLAMTPIGK----------ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289 + L + F + ++M F K A AG++K S H + Sbjct: 187 VVWLERYLRSGRAELLNGRPSDVLFPSLRGEQMTRQTFWHRIKHHARVAGIDKPLSPHTL 246 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 R AT + GA + G + + YT A + RL +++ Sbjct: 247 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-KARLQQLHAQ 293 >gi|295695953|ref|YP_003589191.1| tyrosine recombinase XerD [Bacillus tusciae DSM 2912] gi|295411555|gb|ADG06047.1| tyrosine recombinase XerD [Bacillus tusciae DSM 2912] Length = 295 Score = 159 bits (401), Expect = 8e-37, Method: Composition-based stats. Identities = 46/263 (17%), Positives = 98/263 (37%), Gaps = 23/263 (8%) Query: 85 GSLAVNSRISFESYFDQIIR---KSGDFDYRKITTKHIRSGVE---SRKHTPSSAIQFLT 138 LA ++ S+ S + ++G D+ + +HI + + P++ + + Sbjct: 16 KGLAPSTLGSYRSDLEDFSDFLQRTGCGDWPETGRRHIVAYLAHLQKLGRAPATVSRHMA 75 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS----FWSEGSQPRL 194 S+R +++ R+ + ++P ++ PK R E++++ + + R Sbjct: 76 SLRSFYQFLSREGLIEVDPTGQLDSPKADKRLPRVLNVEEVERLLAAPEGLTPMALRDRA 135 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGKE 253 E L +G+R S+ V + N+ +K K V L ++ + Sbjct: 136 MLEMLYATGVRVSELVSLNVTDVNLNMGYVKCYGKGSKERIVPLGSAALEAVHAYLTRGR 195 Query: 254 T----------FFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAG 301 F+N+ +++ F K A AG+ K + H +R AT + G Sbjct: 196 AGLLKNGDPGALFVNHQGKRLTRQGFWKILKKYAQTAGIQKAITPHTLRHSFATHLLENG 255 Query: 302 ATAHELMATYGWKTVDQAETYTK 324 A + G + + YT Sbjct: 256 ADLRAVQEMLGHADISTTQIYTH 278 >gi|325860159|ref|ZP_08173284.1| putative tyrosine recombinase XerD [Prevotella denticola CRIS 18C-A] gi|325482246|gb|EGC85254.1| putative tyrosine recombinase XerD [Prevotella denticola CRIS 18C-A] Length = 315 Score = 159 bits (401), Expect = 8e-37, Method: Composition-based stats. Identities = 50/276 (18%), Positives = 101/276 (36%), Gaps = 23/276 (8%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQII-----RKSGDFDYRKITTKHIRSGVES 125 K ++ +R+ + N+ ++ D+++ + D +H + V Sbjct: 8 KDIVGRFRRYLKLEKGCSPNTLDAYLHDVDKLLRYLAGEQVSVTDVTLEQLEHFAASVSD 67 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 S + L+ +R +++ V Y+ +P +E PK+ + ++ + Sbjct: 68 LGIGARSLARILSGVRQFYRFLVLDGYMEADPTELLESPKQPDHLPEVLSTAEVDLLEQA 127 Query: 186 WS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-IITVELPDG 240 EG + R E L GLR S+ + L ++ G+ V + Sbjct: 128 VDLTKWEGHRNRAIIEVLFSCGLRVSELTHLKLSDLYREEQFVRVMGKGSKERLVPISPR 187 Query: 241 FMK----------LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHG 288 + ++ + P ++ F+N + T I K A +AG+ K S H Sbjct: 188 ALDELDCWFADRNVMKIKPGEEDYVFLNRRGHHLTRTMILIMIKRYAVEAGIRKTISPHT 247 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 +R AT + GA + A G +++ E YT Sbjct: 248 LRHSFATSLLEGGADLRAIQAMLGHESIGTTEIYTH 283 >gi|94986683|ref|YP_594616.1| site-specific recombinase [Lawsonia intracellularis PHE/MN1-00] gi|94730932|emb|CAJ54295.1| site-specific recombinase [Lawsonia intracellularis PHE/MN1-00] Length = 306 Score = 159 bits (401), Expect = 8e-37, Method: Composition-based stats. Identities = 63/282 (22%), Positives = 109/282 (38%), Gaps = 30/282 (10%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFD--QIIRKSGDFDYRKITTKH---IRSGVES 125 L LISE L+ N+ +++ D + + ++ I ++ + Sbjct: 14 LDKLISE-------RGLSHNTIQAYKQDIDVFYLFFQDAGCNFNSIDDEYIMLFIIWLRK 66 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 R + + + L+S+R F W V ++ + NP L ++ PK + ++++M + + Sbjct: 67 RGDSSRTLARRLSSIRNFFHWCVEEDILLSNPALLIDGPKLPSLLPNILSQDEMLRLLTT 126 Query: 186 WSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG 240 G + ++ E L SG+R S+ V + IK K G + L Sbjct: 127 PDITNKLGFRDKVILELLYASGIRVSELIGVHVLDFDQDKGIIKVFGKGGKERYIPLHSS 186 Query: 241 FMKLL---------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGV 289 MKLL TPI K F+N + + K A A +NKS H Sbjct: 187 AMKLLIHYVQKIRPMFTPIEKF-LFLNRSGKGLTRQAIWKIIKRYALLASINKSISPHTF 245 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIR 330 R AT + GA + G + E YT +DR++ Sbjct: 246 RHTFATHLLEGGADLRSVQLLLGHVDMSATELYTHVQSDRLK 287 >gi|119505219|ref|ZP_01627294.1| site-specific tyrosine recombinase XerD [marine gamma proteobacterium HTCC2080] gi|119458910|gb|EAW40010.1| site-specific tyrosine recombinase XerD [marine gamma proteobacterium HTCC2080] Length = 282 Score = 159 bits (401), Expect = 9e-37, Method: Composition-based stats. Identities = 48/268 (17%), Positives = 101/268 (37%), Gaps = 23/268 (8%) Query: 85 GSLAVNSRISFESYF----DQIIRKSGDFDYRK--ITTKHIRSGVESRKHTPSSAIQFLT 138 L+ N+ ++ + + ++ + + + +P S+ +FL+ Sbjct: 3 RGLSENTLAAYRRDLSLYDEWLAEQTAESLLTAGSSQIQSYLGLKLRQGASPRSSARFLS 62 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRL 194 + R ++WA+R+ ++ +P L +E PK+ + ++ D+++ + + R Sbjct: 63 AARSFYRWALREGHIVEDPTLRIESPKQGRPLPKSLSETDVERLLGAPDLELALEFRDRT 122 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLL---AMTPI 250 E L GLR S+ V+ + N ++ K G V + + + L P Sbjct: 123 MLEMLYACGLRVSELVGLQVEQVGLNQGIVRVLGKGGKERLVPMGEEALDWLIQYMRGPR 182 Query: 251 -------GKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAG 301 F +N ++M F K +AG+ + S H +R AT + G Sbjct: 183 IELLKGQSSNVLFPSNRSREMTRQTFWYRIKLYGERAGIQSHLSPHTLRHAFATHLLNHG 242 Query: 302 ATAHELMATYGWKTVDQAETYTKGADRI 329 A + G + + YT A + Sbjct: 243 ADLRVVQMLLGHSDLSTTQIYTHVAKQR 270 >gi|262089688|gb|ACY24783.1| XerD tyrosine recombinase [uncultured organism] Length = 323 Score = 159 bits (401), Expect = 9e-37, Method: Composition-based stats. Identities = 52/290 (17%), Positives = 107/290 (36%), Gaps = 26/290 (8%) Query: 72 KWLISEYRKSAHW--GSLAVNSRISFESYFDQIIRKSGDFDYRKI-----TTKHIRSGVE 124 LI+EY A W L+ N++ S+ Q + I + Sbjct: 31 SQLIAEYL-DAIWMEKGLSHNTQESYRRDLSQFAMWLNQQGRQLIGVDPALVQDYLDIRL 89 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 +K + ++ +FL+ +R L+++ +R+ ++ +P ++ PK + ++ D++ + Sbjct: 90 QQKLSSRTSARFLSCVRGLYRYLLRESRISESPVALIDNPKLSRSLPKSLSETDVEALLA 149 Query: 185 F----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-IITVELPD 239 G + R E L GLR ++ + + ++ G+ + + + Sbjct: 150 APDLSDPVGLRDRTMLEVLYACGLRVTELVELTMPQINLRQNVVRVMGKGSKERLIPMGE 209 Query: 240 GFMKLLAMTPIGKETFFINN----------DKQKMNATQFSIWFKAKATKAGVNK--SAH 287 L +NN Q M F K A AG+ K S H Sbjct: 210 EAAAWLVRYLREARPVLLNNMPDEVVFPSTRAQPMTRQTFWYRIKHWAMVAGIKKDLSPH 269 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 +R AT + GA + G + + YT A ++R+ ++++ Sbjct: 270 TLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVA-KLRMKQQHAQ 318 >gi|77359472|ref|YP_339047.1| site-specific tyrosine recombinase XerD [Pseudoalteromonas haloplanktis TAC125] gi|76874383|emb|CAI85604.1| site-specific tyrosine recombinase XerD [Pseudoalteromonas haloplanktis TAC125] Length = 308 Score = 158 bits (400), Expect = 9e-37, Method: Composition-based stats. Identities = 46/271 (16%), Positives = 99/271 (36%), Gaps = 19/271 (7%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH---TPSSAIQFLTSMR 141 ++ N+ ++ S D+ + + +T + S + R P S + +++++ Sbjct: 33 QGVSENTLSAYRSDLDKFCQFLKGKNLMTVTGLDVESYLAHRVDLGLKPRSTARSISALK 92 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAFE 197 +++ VR++ ++ +P L++ +PK + ++ +++ S G + + E Sbjct: 93 RFYQYFVREKLISDSPMLNIAQPKAGQSLPKTLSEAEVEALLSAPNTDEPMGLRDKAMLE 152 Query: 198 FLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVEL-------PDGFMKLLAMTP 249 L +GLR S+ ++ + K V L + F+K+ Sbjct: 153 LLYATGLRVSELVGLRIEQINLRQAVVFVKGKGNKERLVPLGEEAMYWLEQFLKVGRAQM 212 Query: 250 IGKET--FFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAH 305 I T F + M F K A A + S H +R AT + GA Sbjct: 213 IKHATDFVFPSKRGVGMTRQTFWHRVKHYAILASIESSLSPHTLRHAFATHLLNHGADLR 272 Query: 306 ELMATYGWKTVDQAETYTKGADRIRLGIKNS 336 + G + + YT A+ + Sbjct: 273 VVQMMLGHSDLSTTQIYTHVANERLKSVHAQ 303 >gi|58337257|ref|YP_193842.1| integrase-recombinase [Lactobacillus acidophilus NCFM] gi|227903842|ref|ZP_04021647.1| integrase-recombinase [Lactobacillus acidophilus ATCC 4796] gi|58254574|gb|AAV42811.1| integrase-recombinase [Lactobacillus acidophilus NCFM] gi|227868729|gb|EEJ76150.1| integrase-recombinase [Lactobacillus acidophilus ATCC 4796] Length = 301 Score = 158 bits (400), Expect = 9e-37, Method: Composition-based stats. Identities = 50/284 (17%), Positives = 105/284 (36%), Gaps = 25/284 (8%) Query: 75 ISEYRK-SAHWGSLAVNSRISFESYFDQII-----RKSGDFDYRKITTKHIRSGVESRKH 128 I +Y + S L+VN+ ++ ++ + + + Sbjct: 10 IDDYLRYSQIERGLSVNTINAYRQDLEEYLTFVKKENMTSWPTEATDVDAFLARQHDLNK 69 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----QQFKS 184 SS + ++S+R ++W RQ +NP L ++ PK++ + T++++ Q + Sbjct: 70 ATSSISRLISSLRKFYQWLARQNIQKLNPMLEIDLPKKEHKLPIALTQDEVVNLLDQPNT 129 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVEL----PD 239 G + + E L +G+R S+ +Q L ++ ++ K + + D Sbjct: 130 KQKLGLRDKAILETLYATGMRVSELINLKLQDLHEDLGLVRVLGKGAKERLIPISSVALD 189 Query: 240 GFMK--------LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289 K L+ E F+NN +++ K AG+ K + H + Sbjct: 190 WLKKYEKQVRDPLILNVGKDDEHIFLNNRGKQLTRQAIWQMIKKYCQLAGIAKDVTPHTL 249 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 R AT + GA + G + + YT + + L + Sbjct: 250 RHTFATHLLENGADLRVVQEILGHSDISTTQIYTNLSQKHILQV 293 >gi|300173433|ref|YP_003772599.1| tyrosine recombinase XerD [Leuconostoc gasicomitatum LMG 18811] gi|299887812|emb|CBL91780.1| tyrosine recombinase XerD [Leuconostoc gasicomitatum LMG 18811] Length = 298 Score = 158 bits (400), Expect = 1e-36, Method: Composition-based stats. Identities = 53/304 (17%), Positives = 100/304 (32%), Gaps = 32/304 (10%) Query: 68 PTTLKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGVE 124 + I++Y L+ N+ S+ Q + I I + + Sbjct: 2 THKIDSAIADYLHYIRIERGLSDNTIKSYHQDLQQFALYVTTEKLQLNDIDHIAILTWLN 61 Query: 125 SRKHTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 + + S + +TS+R F + +++ + NP V PK+ T ++ Sbjct: 62 NLREQGKSNNSVIRMVTSLRKFFGYLLQEGLILHNPMTDVRPPKKAEHLPSVLTVAEIDA 121 Query: 182 FKSF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE 236 + G + R E L +GLR S+ + L + I+T K + Sbjct: 122 LLAVPTETTPLGVRNRTLIEVLYATGLRVSELVNLKMSDLHLQLGLIQTIGKGDKERIIP 181 Query: 237 LPDGFMKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVNK-- 284 + + L F+N+ +++ K AG+ K Sbjct: 182 IGEVAADWLEKYFSNSRLLLLKGNESPFVFLNDRGNQLSRQGVWKIIKKLVLLAGITKDV 241 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344 S H +R AT + GA + G + + YT + +R+S V D Sbjct: 242 SPHTLRHSFATHILENGADLRIVQELLGHADISTTQIYTH---------ISKKRLSEVYD 292 Query: 345 SDDP 348 + P Sbjct: 293 NFHP 296 >gi|163798313|ref|ZP_02192240.1| putative integrase [alpha proteobacterium BAL199] gi|159176400|gb|EDP60988.1| putative integrase [alpha proteobacterium BAL199] Length = 285 Score = 158 bits (400), Expect = 1e-36, Method: Composition-based stats. Identities = 58/286 (20%), Positives = 108/286 (37%), Gaps = 22/286 (7%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKHTPS 131 ++ YR+S+ + LA ++ + D + + G D I+T + + ++ K Sbjct: 1 MVDAYRRSSAFTKLAPRTKRDYHQVLDYLRKPLGAADVDGISTPELATLIDRIAEKRNWR 60 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVE---RPKRKTEGIRPWTKEDMQQFKSFWSE 188 A L + +F + + +NP V RP+ RPWT +++ + Sbjct: 61 FANYCLAVISRVFSIGILRGKAKVNPATGVPKLTRPREAPAANRPWTDHEIE--VVLAAA 118 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTG----TIITVELPDG 240 + LA Y+GLR D+ + + + + KT + + + Sbjct: 119 PAGVALAVGLGAYAGLREGDAIALPMSAYSKVGRRAAITFRPGKTHRADEDPLVLPVHPR 178 Query: 241 FMKLLAMTPIGKETFF-INNDKQKMNATQFSIW-FK-----AKATKAGVNKSAHGVRKFS 293 ++L+ G T + + + F F+ A K G + HG+R Sbjct: 179 LVQLIDNRKAGDSTVMVLGMRGRPYTSDGFRTMLFRVIAQLEAAGKVGEGLTFHGLRHTV 238 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339 AT +D GA + GW + A+ YTK DR + R+I Sbjct: 239 ATKLSDLGADNETIADVLGWSSTAMAKRYTKTRDRTKRAAAGLRQI 284 >gi|288928808|ref|ZP_06422654.1| integrase/recombinase XerD [Prevotella sp. oral taxon 317 str. F0108] gi|288329792|gb|EFC68377.1| integrase/recombinase XerD [Prevotella sp. oral taxon 317 str. F0108] Length = 304 Score = 158 bits (400), Expect = 1e-36, Method: Composition-based stats. Identities = 49/278 (17%), Positives = 104/278 (37%), Gaps = 23/278 (8%) Query: 70 TLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKH---IRSGV 123 T+ ++ Y + +L+ N+ ++ + ++ ++ +H + + Sbjct: 7 TVDNMVKAYMRYLKLERNLSPNTIEAYRNDLRWLLAYVNFHGLKVEELKLEHLDNFSASL 66 Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 ++ P S + L+ +R FK+ + ++ +P + P + + ++ + + Sbjct: 67 HDQRIMPRSQARILSGVRSFFKFLLLDGFIDADPTELLVSPHVRNALPDVLSTAEVDRLE 126 Query: 184 SFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVEL- 237 + EG + R E L GLR S+ + +L ++ T K V + Sbjct: 127 ASIDLSKWEGQRNRAIVEVLFSCGLRVSELVNLKLSNLYVEEKFVRVTGKGDKERLVPIS 186 Query: 238 ---PDGF------MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SA 286 D + + P ++ F+N + T I K +A AG+ K S Sbjct: 187 SRALDELNAWFADRNAMRIKPGEEDYVFLNRRGAHLTRTMILIMIKRQAVAAGITKTISP 246 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R AT + GA + A G + + E YT Sbjct: 247 HTLRHSFATALLEGGADLIAIQAMMGHEDIATTEIYTH 284 >gi|299821615|ref|ZP_07053503.1| tyrosine recombinase XerD [Listeria grayi DSM 20601] gi|299817280|gb|EFI84516.1| tyrosine recombinase XerD [Listeria grayi DSM 20601] Length = 296 Score = 158 bits (400), Expect = 1e-36, Method: Composition-based stats. Identities = 53/273 (19%), Positives = 105/273 (38%), Gaps = 25/273 (9%) Query: 85 GSLAVNSRISFES---YFDQIIRKSGDFDYRKITTKHIRSGVESRKH---TPSSAIQFLT 138 LA N+ +++ YFD + G D IT + + + + +P + ++L Sbjct: 16 KGLAANTIQAYKRDLRYFDSFLEIEGITDPNSITRGTVVAFIAFARDADKSPRTIARYLA 75 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRL 194 S+R F + + + + +P + +E PK+ + E++++ + G + + Sbjct: 76 SLRSFFHFLLHDQKMDHDPMIQIETPKQTKALPKVLHLEEVEKLLAAPDPNSILGLRDQA 135 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVEL-----------PDGFM 242 E L +GLR S+ + L ++ I+T K + L + Sbjct: 136 MLEILYATGLRVSELIHLKLDDLHLHMGFIQTIGKGDKERIIPLGHTATAVLTKYLEEAR 195 Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300 L + F+N+ + F K A KAG++K + H +R AT + Sbjct: 196 PKLRKPKYRNDYVFLNHHGGGLTRQGFWKLLKQLAQKAGIDKPITPHTLRHSFATHLLEN 255 Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 GA + G + + YT ++RL Sbjct: 256 GADLRSVQELLGHADISTTQIYTH-VTKLRLQD 287 >gi|89091996|ref|ZP_01164951.1| tyrosine recombinase XerD [Oceanospirillum sp. MED92] gi|89083731|gb|EAR62948.1| tyrosine recombinase XerD [Oceanospirillum sp. MED92] Length = 306 Score = 158 bits (399), Expect = 1e-36, Method: Composition-based stats. Identities = 54/282 (19%), Positives = 102/282 (36%), Gaps = 25/282 (8%) Query: 72 KWLISEYRKSAHW--GSLAVNSRISFESYFDQIIRKSGDFDYR-----KITTKHIRSGVE 124 LI Y A W L+ N+ S+ Q D ++ + + Sbjct: 14 AQLIDIYL-DAIWMEKGLSDNTLSSYRRDLVQFSVWLTDQGVIMKRCCRVDIQKYLAWRV 72 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 + SS + L+ +R +++ +R+E ++ +P L ++ PK+ + T+ +++ Sbjct: 73 KERRKASSTSRMLSCLRGFYRYLLREEMISEDPLLLIDSPKKGRPLPKTLTESEVELLLD 132 Query: 185 FWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPD 239 + R E L +GLR S+ + + N ++ K G V L + Sbjct: 133 APDLSDPVQYRDRAMLEVLYATGLRVSELVALRLHEINLNQGVLRVMGKGGKERLVPLGE 192 Query: 240 GFMKLLAM----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAH 287 + + T + F + Q+M F K A AG++K S H Sbjct: 193 EAIHWVMRYMGEVRPALFTHDVSDVLFPSRRGQQMTRQTFWHRIKRHALTAGIDKTLSPH 252 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 +R AT + GA + G + + YT A + Sbjct: 253 VLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQQR 294 >gi|167622800|ref|YP_001673094.1| tyrosine recombinase XerD [Shewanella halifaxensis HAW-EB4] gi|167352822|gb|ABZ75435.1| tyrosine recombinase XerD [Shewanella halifaxensis HAW-EB4] Length = 300 Score = 158 bits (399), Expect = 1e-36, Method: Composition-based stats. Identities = 52/291 (17%), Positives = 108/291 (37%), Gaps = 24/291 (8%) Query: 70 TLKWLISEYRKSA-HWGSLAVNSRISFE---SYFDQIIRKSGDFDYR--KITTKHIRSGV 123 T LI + L+ N+ ++ + D+ ++K G ++ + + Sbjct: 6 TPDSLIDLFLDDLWSTKGLSDNTLSAYRTDLRHLDRYLQKLGGELVTCSQLEVRDYLAER 65 Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 + +S+ + ++S+R + + + ++ + +P +E PK + ++ED+ + Sbjct: 66 FDKGSAKTSSARMMSSLRRFYGYLIVKKQIDTDPMALIESPKLSRKLPDSLSEEDIDRLL 125 Query: 184 SF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELP 238 + + + E L +GLR S+ ++ L ++ T K G V L Sbjct: 126 AEPIEDDPIECRDKAMLELLYATGLRVSELVGLTMEQLSLRQGLVRITGKGGKERLVPLG 185 Query: 239 D----------GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSA 286 + F + + + F + Q+M F K A +AG+ S Sbjct: 186 ELAITEIESYLKFARTELLKGKQSDVLFPSKRGQQMTRQTFWHRIKLYALRAGISTELSP 245 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 H +R AT + GA + G + + YT A RL +S Sbjct: 246 HTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVAT-ARLATLHSE 295 >gi|110833664|ref|YP_692523.1| integrase/recombinase XerD [Alcanivorax borkumensis SK2] gi|110646775|emb|CAL16251.1| integrase/recombinase XerD [Alcanivorax borkumensis SK2] Length = 312 Score = 158 bits (399), Expect = 1e-36, Method: Composition-based stats. Identities = 52/284 (18%), Positives = 100/284 (35%), Gaps = 30/284 (10%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQII-----RKSGDFDYRKITTKHIRSGVESR 126 WL ++ + L+ +S ++ Q+ ++ + + + Sbjct: 19 SWLDQQWLE----KGLSEHSLSNYRRDLSQLACWLQGQRVALLGCERYQLLEFLAYRHQQ 74 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF- 185 + S + L++++ ++W R+ ++ +P L +ERPK + ++ D++ + Sbjct: 75 GLSARSVARQLSAVKSFYRWLKREGRISEDPALLIERPKLGRPLPKTLSEADVEALLAAP 134 Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGF 241 G + R E L +GLR ++ + I+ K V L + Sbjct: 135 DLSTPLGLRDRAMLEVLYATGLRVTELVTLTQSQVNPRQGVIRVIGKGDKERLVPLGEEA 194 Query: 242 MKLL--------------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--S 285 + L A TP +E F + M F K A AGV K S Sbjct: 195 LHWLERYLREGRALLMGGAATPGNQELLFPSRRGTCMTRQTFWHRIKQLAVVAGVQKKLS 254 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 H +R AT + GA + G + + YT A + Sbjct: 255 PHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVAQQR 298 >gi|303326777|ref|ZP_07357219.1| tyrosine recombinase XerD [Desulfovibrio sp. 3_1_syn3] gi|302862765|gb|EFL85697.1| tyrosine recombinase XerD [Desulfovibrio sp. 3_1_syn3] Length = 309 Score = 157 bits (398), Expect = 2e-36, Method: Composition-based stats. Identities = 58/304 (19%), Positives = 105/304 (34%), Gaps = 31/304 (10%) Query: 51 LTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD 110 +TG + + P L +L+++ L+ + S+ + + Sbjct: 1 MTGMEQSQAVPPLSNQLPAWLDYLLAQ-------RGLSPRTVESYGQDLESFFLFEEELA 53 Query: 111 --------YRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE 162 + + + SR +T + + L+++R F +AV + + NP L +E Sbjct: 54 QSGGSASCLDEQEIFLYLAWLRSRGNTGRTLARRLSALRAFFAFAVEEGTLKTNPALLLE 113 Query: 163 RPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ 218 PK ++E+M++ G + R E L +GLR S+ C V L Sbjct: 114 NPKLPQHLPEVLSREEMEKLLVLPDMDEKSGRRDRCMLEMLYAAGLRVSELCNLSVADLD 173 Query: 219 NNIFSIKT-QKTGTIITVELPDG--------FMKLLAMTPIGKETFFINNDKQKMNATQF 269 ++ K V L D + G F+N + ++ Sbjct: 174 LQRGLVRVFGKGAKERLVPLHDMIQALLGDYLRSWRPLFSPGGNQLFVNRSGRALSRQYI 233 Query: 270 SIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GA 326 K AG+ + S H R AT + GA + G + E YT A Sbjct: 234 WKMVKKYTLLAGIRRAVSPHTFRHSFATHLLEGGADLRAVQLLLGHADISATEIYTHVQA 293 Query: 327 DRIR 330 +R+R Sbjct: 294 ERLR 297 >gi|146308415|ref|YP_001188880.1| site-specific tyrosine recombinase XerD [Pseudomonas mendocina ymp] gi|145576616|gb|ABP86148.1| tyrosine recombinase XerD subunit [Pseudomonas mendocina ymp] Length = 298 Score = 157 bits (398), Expect = 2e-36, Method: Composition-based stats. Identities = 47/275 (17%), Positives = 97/275 (35%), Gaps = 23/275 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYR-----KITTKHIRSGVESRKHTPSSAIQFLTS 139 L+ ++R ++ S + + + + + + S +FL+ Sbjct: 20 KGLSAHTRAAYRSDLEHFNHWLDGRGLQLQCIGRDAILDHLAWRLEQGYQARSTARFLSG 79 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195 +R +++ +R+ V +P L VE P+ + ++ D++ G + R Sbjct: 80 VRGFYRFLLREGVVEEDPSLQVELPQIGRPLPKSLSEADVEALLQAPDLDDPIGLRDRAM 139 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGKET 254 E L GLR S+ ++ + ++ K V L + + + Sbjct: 140 LEVLYACGLRVSELVGLTLEQVNLRQGVLRVFGKGSKERLVPLGEEAIAWIERYSREARP 199 Query: 255 FFI----------NNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGA 302 + + ++M F K +A AG+ KS H +R AT + GA Sbjct: 200 LLLGGKPSDVLFPSLRGEQMTRQTFWHRIKHQAKVAGIGKSLSPHTLRHAFATHLLNHGA 259 Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 + G + + YT A R RL +++ Sbjct: 260 DLRVVQMLLGHSDLSTTQIYTHIA-RARLQELHAK 293 >gi|85712976|ref|ZP_01044015.1| Site-specific recombinase [Idiomarina baltica OS145] gi|85693214|gb|EAQ31173.1| Site-specific recombinase [Idiomarina baltica OS145] Length = 301 Score = 157 bits (398), Expect = 2e-36, Method: Composition-based stats. Identities = 50/273 (18%), Positives = 98/273 (35%), Gaps = 22/273 (8%) Query: 85 GSLAVNSRISFESYFDQIIR-----KSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139 ++ N++ ++ S + + G + S+ +P S +FL++ Sbjct: 24 HGVSENTQAAYRSDLKKFCEFLAQHRLGLHQVTSTVVQDYLLWRRSQGLSPRSTSRFLSA 83 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----QQFKSFWSEGSQPRLA 195 M+ L +A++ + +P ++RPK T+ D+ G + R Sbjct: 84 MKKLTPYALKSGWFVTDPIAKLKRPKMSPAVPHSLTESDVLSLLDAPDVDTPIGLRDRAM 143 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAM-TPIGKE 253 E L +GLR ++ R + ++ K V L + ++ L+ G+ Sbjct: 144 LEVLYATGLRVTELVRLQYDQVSLAQGLVRVVGKGDKERLVPLGEEAIEWLSRYMKSGRP 203 Query: 254 TF--------FINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGAT 303 FI + F + A +A +N S H +R AT + GA Sbjct: 204 VLSERQSGWVFITQRGTLLTRQAFWYRIRTYAEQAQINSHLSPHTLRHAFATHLLNHGAD 263 Query: 304 AHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336 L G + + YT+ A + RL ++ Sbjct: 264 LRVLQMLLGHSDLSTTQIYTQVA-KERLQQMHA 295 >gi|294674930|ref|YP_003575546.1| tyrosine recombinase XerD [Prevotella ruminicola 23] gi|294472077|gb|ADE81466.1| tyrosine recombinase XerD [Prevotella ruminicola 23] Length = 303 Score = 157 bits (397), Expect = 2e-36, Method: Composition-based stats. Identities = 51/276 (18%), Positives = 100/276 (36%), Gaps = 23/276 (8%) Query: 72 KWLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGD-----FDYRKITTKHIRSGVES 125 K ++ Y + +++ N+ +++ +++ D +H + + Sbjct: 5 KGIVKAYVRYLKLQRNMSGNTLDAYQRDLRKLLDYLEHEQLAISDVTLADLEHFSASLHD 64 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 P S + L+ +R FK+ Y +P +E P+ T +++ + + Sbjct: 65 IGIHPRSQCRILSGIRSFFKFVQLDGYRDDDPTELLESPQIGDHLPEVLTTQEVDRLEES 124 Query: 186 WS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG 240 EG + R E L GLR S+ + L + ++ K V + Sbjct: 125 IDLSKWEGHRNRAIIEVLFSCGLRVSELVNLKLSDLYLDEEYVRVLGKGSKERLVPISPK 184 Query: 241 F----------MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHG 288 L+ + P ++ F+N + T I KA+A +A + K S H Sbjct: 185 AIQELRFWFNVRNLMKIKPGEEDYVFLNRRGAHLTRTMILIMIKAQAKEARIQKTISPHT 244 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 +R AT + GA + A G + + E YT Sbjct: 245 LRHSFATALLEGGADLRFIQALLGHEDIGTTEIYTH 280 >gi|226945992|ref|YP_002801065.1| site-specific tyrosine recombinase XerD [Azotobacter vinelandii DJ] gi|226720919|gb|ACO80090.1| Site-specific tyrosine recombinase [Azotobacter vinelandii DJ] Length = 298 Score = 157 bits (396), Expect = 3e-36, Method: Composition-based stats. Identities = 53/275 (19%), Positives = 99/275 (36%), Gaps = 23/275 (8%) Query: 85 GSLAVNSRISFESYFDQI-----IRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139 L+ ++R ++ S + R + + + + S +FL+ Sbjct: 20 KGLSAHTRAAYRSDLELFNGWLCERGLALVEVGRELILDHLAWRVDAGYKARSTARFLSG 79 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195 +R F++ +R+ +A +P L VE P+ + ++ D++ + G + R Sbjct: 80 LRGFFRYLLREGVIAGDPTLQVELPQLGRPLPKSLSEADVEALLAAPEDDDPLGLRDRAM 139 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAM------- 247 E L GLR S+ ++ L ++ K V L + + L Sbjct: 140 LEVLYACGLRVSELVGLRLEQLNLRQGVVRVFGKGSKERLVPLGEEAIAWLERYLVEARP 199 Query: 248 ---TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGA 302 + F + ++M F K A AG+ KS H +R AT + GA Sbjct: 200 LLLGGRPSDVLFPSLRGEQMTRQTFWHRIKHHARLAGIGKSLSPHTLRHAFATHLLNHGA 259 Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 + G + + YT A R RL ++R Sbjct: 260 DLRVVQMLLGHSDLSTTQIYTHIA-RARLQELHAR 293 >gi|152989006|ref|YP_001346765.1| site-specific tyrosine recombinase XerD [Pseudomonas aeruginosa PA7] gi|150964164|gb|ABR86189.1| tyrosine recombinase XerD [Pseudomonas aeruginosa PA7] Length = 298 Score = 157 bits (396), Expect = 3e-36, Method: Composition-based stats. Identities = 56/288 (19%), Positives = 103/288 (35%), Gaps = 26/288 (9%) Query: 74 LISEYRKSAHW--GSLAVNSRISFESYFDQIIRKSGDFDYR-----KITTKHIRSGVESR 126 LI + A W LA N+R ++ + +Q R + + + Sbjct: 8 LIDRFL-DALWLEKGLADNTREAYRNDLEQFNAWLDGHGLRLEGVGRDAILDHLAWRLEQ 66 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF- 185 + S +FL+ +R +++ +R +A +P L V+ P+ + ++ D++ + Sbjct: 67 GYKARSTARFLSGLRGFYRYCLRDGLIAEDPTLQVDLPQLGKPLPKSLSEADVEALLAAP 126 Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGF 241 G + R E L GLR S+ ++ + +K K V L + Sbjct: 127 EVDDPLGLRDRTMLEVLYACGLRVSELVGLTLEQVNLRQGVVKVFGKGSKERLVPLGEEA 186 Query: 242 MKLLAM----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGV 289 + L + F + ++M F K A A + KS H + Sbjct: 187 IGWLERYLREARADLLGGRPSDVLFPSLRGEQMTRQTFWHRIKRHAQVAAIGKSISPHTL 246 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 R AT + GA + G + + YT A R RL ++R Sbjct: 247 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHIA-RARLQDLHAR 293 >gi|300812172|ref|ZP_07092616.1| tyrosine recombinase XerD [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300496857|gb|EFK31935.1| tyrosine recombinase XerD [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 301 Score = 157 bits (396), Expect = 3e-36, Method: Composition-based stats. Identities = 45/283 (15%), Positives = 106/283 (37%), Gaps = 24/283 (8%) Query: 75 ISEYRK-SAHWGSLAVNSRISFESYFDQII-----RKSGDFDYRKITTKHIRSGVESRKH 128 I++Y + S L+ N+ +++ + + + + + + Sbjct: 11 INDYLRYSQIERGLSPNTIAAYKQDLLEFLAFVKEEQMPAWPLEAVEIDAFLAKERDLGK 70 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----QQFKS 184 SS + ++++ ++W VRQ+ +A++P ++ PKR+ T+ ++ +Q Sbjct: 71 ANSSISRLVSTLSRFYQWLVRQQLIALDPMSQIDAPKREKRMPLALTEAEVGKLLEQPDL 130 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMK 243 G + R E L +G+R S++ + + ++ IK K + + + Sbjct: 131 TTDLGIRDRALVELLYATGMRVSEAVNLQLADVHADLQLIKVLGKGSKERLIPVSALALD 190 Query: 244 LLAM-TPIGK----------ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290 + P+ + F+N+ ++ K +AG+ K + H +R Sbjct: 191 WIKRYLPVRDQQLLKRGKSSDYLFLNSRGGQLTRQAVWQKIKKYCQQAGIAKDVTPHTLR 250 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 AT + GA + G + + YT + L + Sbjct: 251 HSFATHLLEHGADLRVVQEILGHTDISTTQIYTNLTQKHILDV 293 >gi|256822057|ref|YP_003146020.1| tyrosine recombinase XerD [Kangiella koreensis DSM 16069] gi|256795596|gb|ACV26252.1| tyrosine recombinase XerD [Kangiella koreensis DSM 16069] Length = 295 Score = 156 bits (395), Expect = 3e-36, Method: Composition-based stats. Identities = 50/275 (18%), Positives = 106/275 (38%), Gaps = 23/275 (8%) Query: 85 GSLAVNSRISFE---SYFDQIIRKSGDFDYRK--ITTKHIRSGVESRKHTPSSAIQFLTS 139 L+ + S+ F+Q ++K G R + + +++++ S +FL+S Sbjct: 17 QGLSDATLSSYRSDLKLFNQWLQKQGKDLLRSSPFDIQQYLAERYTKQYSSRSTARFLSS 76 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRLA 195 R +++ ++ + ++P ++ PK + + +++++ S G + + Sbjct: 77 ARKFYRYLIQSNQIKVDPTQQIDSPKIQPPVPKSLSEDEVDSLLSQPDLETALGLRDKAM 136 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGKET 254 E L SGLR ++ V + ++ K V + + ++ +++ Sbjct: 137 LELLYSSGLRITELISVEVNQIGFQQGVMRVIGKGNKERLVPIGEEALQAISLYIRHGRA 196 Query: 255 ----------FFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302 F++ Q+M F K A AG+ K S H +R AT + GA Sbjct: 197 ELANEKVCDWLFLSTRGQRMTRQTFWHRIKLYAKTAGIRKHLSPHTLRHAFATHLLNHGA 256 Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 L G + + YT A + RL +S Sbjct: 257 DLRTLQMLLGHSDLSTTQIYTHVA-KERLKQLHSE 290 >gi|170739481|ref|YP_001768136.1| integrase family protein [Methylobacterium sp. 4-46] gi|168193755|gb|ACA15702.1| integrase family protein [Methylobacterium sp. 4-46] Length = 383 Score = 156 bits (395), Expect = 4e-36, Method: Composition-based stats. Identities = 47/343 (13%), Positives = 96/343 (27%), Gaps = 38/343 (11%) Query: 20 KIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYR 79 + +Y R R P F+ S + E R LI EY Sbjct: 22 RTYWYHRATGMRL--DGEPGSREFL--------LSVAEAEKTLKARHTGDNFDGLIREYT 71 Query: 80 KSAHWGS-LAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE------SRKHTPSS 132 S + L+ +++ + + + GD + +R +R Sbjct: 72 ASLEFTDKLSASTQREYRRMLAKAESEFGDMPREVLNDPAVRGDFLDWRAKVARASGERE 131 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192 A L+ + + WA + N +R W E + F Q Sbjct: 132 ADNRLSVISAMLTWARENGRIHANHIQGFKRLYHVDRSEIIWLPEHIHAFMRVAPIELQ- 190 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT------IITVELPDGFMKLLA 246 A L++G R D +++ K+ ++ + +L Sbjct: 191 -RALIMALHTGQRQGDLLVLPWSAYDGTAITLRQGKSARGRRVAPLVAIPCTQALRLMLD 249 Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK------------SAHGVRKFSA 294 + + F+ ++ +AG+++ H +R + Sbjct: 250 GMQRVSPLILTTKTGRALQKRYFARLWEEATIEAGLDRITLPGLAEPVSLHFHDLRGTAV 309 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIR-LGIKNS 336 T+ ++AG ++ G + R R L + Sbjct: 310 TMLSEAGCQPQQIATITGHSLKTVTVILDRYLARTRALADQAI 352 >gi|125973194|ref|YP_001037104.1| tyrosine recombinase XerD subunit [Clostridium thermocellum ATCC 27405] gi|125713419|gb|ABN51911.1| tyrosine recombinase XerD subunit [Clostridium thermocellum ATCC 27405] Length = 296 Score = 156 bits (395), Expect = 4e-36, Method: Composition-based stats. Identities = 43/269 (15%), Positives = 106/269 (39%), Gaps = 23/269 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKI------TTKHIRSGVESRKHTPSSAIQFLT 138 L++N+ S++ +Q I D + I T ++ + S+ + L Sbjct: 18 KRLSLNTLQSYKRDIEQYITYLKDMKIQNIANTNKTTVIAYLLHLQKKGRATSTISRNLA 77 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRL 194 S+R +++ ++ ++ +P ++E PK + + + + ++++ +G + + Sbjct: 78 SIRSFYQYLTKKGIISQDPTENLESPKVEKKLPQILSTKEVELLLEQPKCDDLKGYRDKA 137 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP----DGFMKLLA---- 246 E L +G+R S+ + + + I+ K V + + + L Sbjct: 138 MLELLYATGIRVSELISLDLDDVNLEMQYIRCNKGARERIVPIGSVSVNALQEYLTKSRN 197 Query: 247 --MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302 + ++ F+N + +++ F K +A +NK + H +R A + GA Sbjct: 198 LLIQRPDEKALFVNVNGKRLTRQGFWKIIKQYKNQAKINKDITPHTLRHSFAAHLLENGA 257 Query: 303 TAHELMATYGWKTVDQAETYTKGA-DRIR 330 + G + + Y + A +RI+ Sbjct: 258 DLRSIQEMLGHSDISSTQIYAQLAKNRIK 286 >gi|121535764|ref|ZP_01667566.1| tyrosine recombinase XerD [Thermosinus carboxydivorans Nor1] gi|121305663|gb|EAX46603.1| tyrosine recombinase XerD [Thermosinus carboxydivorans Nor1] Length = 295 Score = 156 bits (395), Expect = 4e-36, Method: Composition-based stats. Identities = 45/263 (17%), Positives = 100/263 (38%), Gaps = 23/263 (8%) Query: 85 GSLAVNSRISFESYFDQ--IIRKSGDFDYRKITTKHIR----SGVESRKHTPSSAIQFLT 138 LA N+ S+ Q + ++ D K + ++ + ++S+ S+ + L Sbjct: 16 RGLAQNTLESYGRDLRQFQLFLQNDKLDIIKDSNRNTILNYLNNLQSKGRAVSTISRNLA 75 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS----FWSEGSQPRL 194 +++ +++ VR+ Y+ +P ++E PK + + + + ++++ G + + Sbjct: 76 AIKSFYQYLVRERYIDKDPAANLESPKLEKKLPKILSIAEVEELLKQPNSLLPTGLRDKA 135 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGK- 252 E L +G+R S+ + + ++ IK K V L K + Sbjct: 136 MLELLYATGIRVSELISLNITDVNLDMGYIKCYGKGAKERIVPLGSIAAKCVQEYIAKGR 195 Query: 253 ---------ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAG 301 F+N+ ++ F K A +A + K + H +R AT + G Sbjct: 196 PKLVRTYDEPALFVNHHGNRLTRQGFWKIIKKYAQEANITKEITPHTLRHSFATHLLENG 255 Query: 302 ATAHELMATYGWKTVDQAETYTK 324 A + G + + YT Sbjct: 256 ADLRSVQEMLGHADISTTQIYTH 278 >gi|302338068|ref|YP_003803274.1| tyrosine recombinase XerD [Spirochaeta smaragdinae DSM 11293] gi|301635253|gb|ADK80680.1| tyrosine recombinase XerD [Spirochaeta smaragdinae DSM 11293] Length = 311 Score = 156 bits (395), Expect = 4e-36, Method: Composition-based stats. Identities = 58/281 (20%), Positives = 101/281 (35%), Gaps = 24/281 (8%) Query: 70 TLKWLISEYRKS-AHWGSLAVNSRISFESYFDQII---RKSGDFDYRKITTK--HIRSGV 123 T K L+ +Y SLA SR S+ S +++ + G + + Sbjct: 2 TGKTLLRDYDAHLGAVLSLAPLSRESYVSAISRLLGWLEEEGKNPFSASDADLVDYLTLR 61 Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 + + ++ MR F + V +EY NP V+ PK + E+++ F Sbjct: 62 FEEGSDKHTIAKLVSIMRSFFDFLVSEEYRQDNPARMVDAPKLGRSLPSVLSIEEVEAFL 121 Query: 184 SF----WSEGSQPRLAFEFLLYSGLRCSDSCRA--GVQHLQNNIFSIKTQKTGTIITVEL 237 + EG + R FE + +GLR S++ G +L++ I + T K + L Sbjct: 122 NAIPLETPEGLRDRALFELIYSAGLRVSEAVGLSAGSLYLRDGIIRV-TGKGSKQRVIPL 180 Query: 238 PDGFMKLLAMTPIGK-----------ETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA 286 D K + + F++ ++ FK + AGV+ Sbjct: 181 GDEARKWIGRYLTDARPLLAKSFHPTDALFLSRRGTPLSRKNVWKRFKQFSLLAGVDGKV 240 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 H +R AT GA + G + + YT D Sbjct: 241 HTLRHSFATHLLAGGADLRSVQELLGHSDISTTQIYTHIDD 281 >gi|296112007|ref|YP_003622389.1| integrase/recombinase [Leuconostoc kimchii IMSNU 11154] gi|295833539|gb|ADG41420.1| integrase/recombinase [Leuconostoc kimchii IMSNU 11154] Length = 298 Score = 156 bits (395), Expect = 4e-36, Method: Composition-based stats. Identities = 47/286 (16%), Positives = 100/286 (34%), Gaps = 24/286 (8%) Query: 71 LKWLISEYRKSAH-WGSLAVNSRISFESYFDQII--RKSGDFDYRKITTKHIRSGVESRK 127 + I++Y L+ N+ S++ Q + + + + I + + + Sbjct: 5 IDNAIADYLHYIRIERGLSDNTIKSYQQDLKQFSVYMTAENLNLNAVDHVVILTWLNQLR 64 Query: 128 HTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK- 183 S + +TS+R F + +++ + NP V+ PK+ + ++ Sbjct: 65 ELNKSNNSVIRMVTSLRKFFGYLLQENVIRHNPMSDVKPPKKAEHLPAVLSVAEIDALLQ 124 Query: 184 ---SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPD 239 + G + R E + +GLR S+ + L + I+T K + + + Sbjct: 125 VPTEKTALGLRNRALIEVMYATGLRVSELVNLKMSDLHLQLGLIQTIGKGDKERIIPIGE 184 Query: 240 GFMKLLAMTPIGKET----------FFINNDKQKMNATQFSIWFKAKATKAGVNK--SAH 287 + L F+N+ +++ K + AG++K S H Sbjct: 185 IATEWLERYFSHSRLTLLKDKVSPFVFLNDRGTQLSRQGVWKIIKNLVSAAGIDKDVSPH 244 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 +R AT + GA + G + + YT + RL Sbjct: 245 TLRHSFATHILENGADLRIVQELLGHADISTTQIYTH-ISKKRLSE 289 >gi|161507450|ref|YP_001577404.1| integrase/recombinase [Lactobacillus helveticus DPC 4571] gi|260101638|ref|ZP_05751875.1| integrase/recombinase XerD [Lactobacillus helveticus DSM 20075] gi|160348439|gb|ABX27113.1| Integrase/recombinase [Lactobacillus helveticus DPC 4571] gi|260084571|gb|EEW68691.1| integrase/recombinase XerD [Lactobacillus helveticus DSM 20075] gi|323466665|gb|ADX70352.1| Tyrosine recombinase xerD [Lactobacillus helveticus H10] gi|328467464|gb|EGF38539.1| tyrosine recombinase xerD [Lactobacillus helveticus MTCC 5463] Length = 301 Score = 156 bits (395), Expect = 4e-36, Method: Composition-based stats. Identities = 49/292 (16%), Positives = 105/292 (35%), Gaps = 25/292 (8%) Query: 67 KPTTLKWLISEYRK-SAHWGSLAVNSRISFESYFD---QIIRKSG--DFDYRKITTKHIR 120 + L+ I +Y + S L+ N+ ++ + ++K G + Sbjct: 2 EKNKLQDQIDDYLRYSQIERGLSSNTITAYRQDLEEYLAFVKKEGMDSWPTEASDVDAFL 61 Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 + SS + ++SMR ++W RQ +NP L ++ PK++ ++++ Sbjct: 62 ARQYDLNKATSSISRLISSMRKFYQWLARQNIQKLNPMLEIDLPKKERRLPVALNQKEIN 121 Query: 181 QFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITV 235 + G + R E L +G+R S+ +Q L ++ ++ K + Sbjct: 122 DLLAQPDIKRKLGLRDRAILETLYATGMRVSELINLELQDLHEDLGLVRVLGKGSKERLI 181 Query: 236 ELP------------DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283 + + L+ E F+N+ +++ K AG+ Sbjct: 182 PISSVALHWIKQYQKEVRDPLILKAGQNDEHIFLNSRAKQLTRQAIWQMIKKYCQSAGIT 241 Query: 284 K--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 K + H +R AT + GA + G + + YT + + L + Sbjct: 242 KDVTPHTLRHTFATHLLENGADLRVVQEILGHSDISTTQIYTNLSQKHILQV 293 >gi|256003998|ref|ZP_05428984.1| tyrosine recombinase XerD [Clostridium thermocellum DSM 2360] gi|281417393|ref|ZP_06248413.1| tyrosine recombinase XerD [Clostridium thermocellum JW20] gi|255992126|gb|EEU02222.1| tyrosine recombinase XerD [Clostridium thermocellum DSM 2360] gi|281408795|gb|EFB39053.1| tyrosine recombinase XerD [Clostridium thermocellum JW20] gi|316940575|gb|ADU74609.1| tyrosine recombinase XerD [Clostridium thermocellum DSM 1313] Length = 294 Score = 156 bits (395), Expect = 4e-36, Method: Composition-based stats. Identities = 43/269 (15%), Positives = 106/269 (39%), Gaps = 23/269 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKI------TTKHIRSGVESRKHTPSSAIQFLT 138 L++N+ S++ +Q I D + I T ++ + S+ + L Sbjct: 16 KRLSLNTLQSYKRDIEQYITYLKDMKIQNIANTNKTTVIAYLLHLQKKGRATSTISRNLA 75 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRL 194 S+R +++ ++ ++ +P ++E PK + + + + ++++ +G + + Sbjct: 76 SIRSFYQYLTKKGIISQDPTENLESPKVEKKLPQILSTKEVELLLEQPKCDDLKGYRDKA 135 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP----DGFMKLLA---- 246 E L +G+R S+ + + + I+ K V + + + L Sbjct: 136 MLELLYATGIRVSELISLDLDDVNLEMQYIRCNKGARERIVPIGSVSVNALQEYLTKSRN 195 Query: 247 --MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302 + ++ F+N + +++ F K +A +NK + H +R A + GA Sbjct: 196 LLIQRPDEKALFVNVNGKRLTRQGFWKIIKQYKNQAKINKDITPHTLRHSFAAHLLENGA 255 Query: 303 TAHELMATYGWKTVDQAETYTKGA-DRIR 330 + G + + Y + A +RI+ Sbjct: 256 DLRSIQEMLGHSDISSTQIYAQLAKNRIK 284 >gi|315127593|ref|YP_004069596.1| site-specific tyrosine recombinase XerD [Pseudoalteromonas sp. SM9913] gi|315016107|gb|ADT69445.1| site-specific tyrosine recombinase XerD [Pseudoalteromonas sp. SM9913] Length = 308 Score = 156 bits (395), Expect = 4e-36, Method: Composition-based stats. Identities = 46/270 (17%), Positives = 99/270 (36%), Gaps = 19/270 (7%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH---TPSSAIQFLTSMR 141 ++ N+ ++ S D+ + +T+ + S + R P S + +++++ Sbjct: 33 QGVSENTLSAYRSDLDKFCQFLKGESLMTVTSLDVESYLAHRVDLGLKPRSTARSISALK 92 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAFE 197 +++ VR++ ++ +P +++ +PK + ++ +++ S G + + E Sbjct: 93 RFYQYFVREKIISDSPMVNIAQPKAGQSLPKTLSEAEVEALLSAPNIEEPMGLRDKAMLE 152 Query: 198 FLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVEL-------PDGFMKLLAMTP 249 L +GLR ++ ++ + K V L + F+KL Sbjct: 153 LLYATGLRVTELVGLRMEQINLRQAVVFVKGKGNKERLVPLGEEAMYWLEQFLKLGRAQM 212 Query: 250 IGKET--FFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAH 305 I T F + M F K A A V S H +R AT + GA Sbjct: 213 IKHATDFVFPSKRGVGMTRQTFWHRIKHYAILASVESPLSPHTLRHAFATHLLNHGADLR 272 Query: 306 ELMATYGWKTVDQAETYTKGADRIRLGIKN 335 + G + + YT A+ + Sbjct: 273 VVQMMLGHSDLSTTQIYTHVANERLKSVHA 302 >gi|289675311|ref|ZP_06496201.1| site-specific recombinase, phage integrase family protein [Pseudomonas syringae pv. syringae FF5] Length = 312 Score = 156 bits (394), Expect = 5e-36, Method: Composition-based stats. Identities = 63/315 (20%), Positives = 118/315 (37%), Gaps = 30/315 (9%) Query: 17 RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76 +HG Y RKG R+ S F A ++ K + LI Sbjct: 4 KHG-AYYLVRKGKWERL------GSDFQEALLA---------YAKIVGGKSNGGMSLLID 47 Query: 77 EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQF 136 E + L+ N+ +E+ ++ +F+ R++ +H+ + TP+ A + Sbjct: 48 EALDAMR-RRLSENTIKQYEAASVRLKTYLEEFEPRQVLPRHVAALKLHMSDTPNMANRV 106 Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF 196 ++ +R++F +A+ ++ V NPC + R K R + + + SE + + Sbjct: 107 ISFLRMVFAYALERQIVDSNPCTGIRRHAEKKR-DRYISDAEFAAICAASSEYMS--VIW 163 Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA---MTP---I 250 E +G R SD + + + + + QKTG + V + LL P Sbjct: 164 EMCFLTGQRISDVLSIKLSDISDVGIAFEQQKTGAKLIVGMSPDLKALLDRVNALPRKVR 223 Query: 251 GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMA 309 G F + + ++ + F+A AGV + H +R S T + G A Sbjct: 224 GATLFCARSGGKPVSYDTCKMGFRAACKAAGVKGATIHDLRAKSLTDTDRQGNNA---QM 280 Query: 310 TYGWKTVDQAETYTK 324 G + Y + Sbjct: 281 LGGHTDAKMTKRYLR 295 >gi|262376987|ref|ZP_06070213.1| tyrosine recombinase XerD [Acinetobacter lwoffii SH145] gi|262308025|gb|EEY89162.1| tyrosine recombinase XerD [Acinetobacter lwoffii SH145] Length = 305 Score = 156 bits (394), Expect = 5e-36, Method: Composition-based stats. Identities = 47/291 (16%), Positives = 104/291 (35%), Gaps = 19/291 (6%) Query: 57 KREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF--DYRKI 114 K+ I +P + P +L +R +++ ++R ++ S Q ++ Sbjct: 4 KKPRIPAPVQIPDAFSYL-QGFRDYLIAQTVSPHTRNAYLSDLVQCAECLSKPLPEWNHD 62 Query: 115 TTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174 + + ++ +P S + L+++R +K+ Q+ + NP + + PK + Sbjct: 63 DISDVLIALTKQQKSPRSIARCLSALRSFYKFLREQKLRSDNPVAAHKTPKLGRALPKDL 122 Query: 175 TKEDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKT 229 ++ D++ G + R FE L GLR ++ ++ + ++ K Sbjct: 123 SEADVEALIHAPDINTALGLRDRAMFEVLYACGLRVTELINLRLELINLKQGYLRIVGKG 182 Query: 230 GTIITVELPDGFMKLL---------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA 280 + + + + + + F+ M+ F K A +A Sbjct: 183 NKERLIPMGQMACEWVEKYLNEARPQLYKTSTDYLFLTQHGGIMSRQNFWYAIKRYALQA 242 Query: 281 GV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 G+ S H +R AT + GA + G + + YT A Sbjct: 243 GIQSELSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQVR 293 >gi|330997435|ref|ZP_08321286.1| tyrosine recombinase XerD [Paraprevotella xylaniphila YIT 11841] gi|329570809|gb|EGG52525.1| tyrosine recombinase XerD [Paraprevotella xylaniphila YIT 11841] Length = 317 Score = 156 bits (394), Expect = 5e-36, Method: Composition-based stats. Identities = 55/288 (19%), Positives = 104/288 (36%), Gaps = 25/288 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESRKH-- 128 L+ Y + L+ N+ ++ +++ D D+R ++ + + Sbjct: 19 LLRRYYQYLKLERGLSENTLDAYTEDLRKLLDFFSDEELDFRAVSLDDLHQFMAELADVG 78 Query: 129 -TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS--- 184 +P S + L+ +R +++ ++ + +P +E PK T ++ Sbjct: 79 ISPRSMARILSGIRSFYRFLYVEKEIEQDPTELLESPKIGRRLPEVLTVAEIDAMIEGID 138 Query: 185 -FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGF- 241 EG + R E L GLR S+ C + L I+ + G V + Sbjct: 139 LSQPEGQRNRAILEMLYSCGLRVSELCGLRISDLFLEEGFIRVKGKGEKERLVPISGRAV 198 Query: 242 ---------MKLLAMTPIGKETFFIN-NDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289 L+ + P ++ F++ ++ W K A AG+ K S H Sbjct: 199 HELENWFLCRNLIRIKPGHEDFVFLSLRRGTALSRITIFYWVKELAVAAGIQKTISPHTF 258 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 R AT + GA + A G +++ E YT DR RL + Sbjct: 259 RHSFATHLLEGGANLRVIQAMLGHESISTTEIYTH-IDRSRLRREIME 305 >gi|313123528|ref|YP_004033787.1| tyrosine recombinase xerd subunit [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312280091|gb|ADQ60810.1| Tyrosine recombinase XerD subunit [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 301 Score = 156 bits (394), Expect = 6e-36, Method: Composition-based stats. Identities = 45/283 (15%), Positives = 105/283 (37%), Gaps = 24/283 (8%) Query: 75 ISEYRK-SAHWGSLAVNSRISFESYFDQII-----RKSGDFDYRKITTKHIRSGVESRKH 128 I++Y + S L+ N+ ++ + + + + + + Sbjct: 11 INDYLRYSQIERGLSPNTIAAYHQDLLEFLAFVKEEQMPAWPLEAVEIDAFLAKERDLGK 70 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----QQFKS 184 SS + ++++ ++W VRQ+ +A++P ++ PKR+ T+ ++ +Q Sbjct: 71 ANSSISRLVSTLSRFYQWLVRQQLIALDPMSQIDAPKREKRMPLALTEAEVGKLLEQPDL 130 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMK 243 G + R E L +G+R S++ + + ++ IK K + + + Sbjct: 131 TTDLGIRDRALVELLYATGMRVSEAVNLKLADVHADLQLIKVLGKGSKERLIPVSALALD 190 Query: 244 LLAM-TPIGK----------ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290 + P+ + F+N+ ++ K +AG+ K + H +R Sbjct: 191 WIKRYLPVRDQQLLKRGKSSDYLFLNSRGGQLTRQAVWQKIKKYCQQAGIAKDVTPHTLR 250 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 AT + GA + G + + YT + L + Sbjct: 251 HSFATHLLEHGADLRVVQEILGHTDISTTQIYTNLTQKHILDV 293 >gi|188586285|ref|YP_001917830.1| tyrosine recombinase XerD subunit [Natranaerobius thermophilus JW/NM-WN-LF] gi|179350972|gb|ACB85242.1| tyrosine recombinase XerD subunit [Natranaerobius thermophilus JW/NM-WN-LF] Length = 295 Score = 155 bits (393), Expect = 6e-36, Method: Composition-based stats. Identities = 46/268 (17%), Positives = 102/268 (38%), Gaps = 33/268 (12%) Query: 85 GSLAVNSRISFESYFDQIIR---KSGDFDYRKITTKHIRSGVESRKHTP---SSAIQFLT 138 L+ N+ S+ + + G ++++ HI + K ++ + + Sbjct: 16 RGLSENTLNSYLRDLKNFLEFLNQQGVTKWQEVKRTHIMKYLIFMKEKGKASATVTRNIA 75 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRL 194 S+R F++ +++ ++ NP +E PK++ + + +++ + + +G + + Sbjct: 76 SVRSFFQFLLQEGMISENPSTDLETPKQEKKLPEILSPQEVDKLLNQPDTTDFKGKRDKA 135 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVEL---------------P 238 E L +G+R S+ V+H+ +N I K V L Sbjct: 136 MLEVLYATGMRVSELISLNVEHVDSNNGYILCKGKGDKERIVPLGKMAIKSVSDYISKSR 195 Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATI 296 K L + F+N+ ++++ F K A K G+ + + H +R AT Sbjct: 196 PQLRKNL-----SEPALFLNHHGKRLSRQGFWKILKKYAEKIGIKQKITPHTLRHSFATH 250 Query: 297 SADAGATAHELMATYGWKTVDQAETYTK 324 + GA + G + + YT Sbjct: 251 LLENGADLRAVQEMLGHSDISTTQIYTH 278 >gi|147677545|ref|YP_001211760.1| site-specific recombinase XerD [Pelotomaculum thermopropionicum SI] gi|146273642|dbj|BAF59391.1| site-specific recombinase XerD [Pelotomaculum thermopropionicum SI] Length = 295 Score = 155 bits (393), Expect = 6e-36, Method: Composition-based stats. Identities = 48/270 (17%), Positives = 104/270 (38%), Gaps = 24/270 (8%) Query: 85 GSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFLT 138 L+ N+ +S+ + + K+G + + + + + ++ + L Sbjct: 16 RGLSENTLVSYRADLAKFISFCAKAGLKSVEQAGRDTVMAYLFQLQLDGRSTATISRHLA 75 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ----QFKSFWSEGSQPRL 194 S+R +++AV + + +P +E PK + R + E++ Q S G + + Sbjct: 76 SIRAFYRFAVGEGILPADPSSDLETPKPAQKLPRVLSVEEVDLLMGQPGSGEPAGLRDKA 135 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-ITVELPDGFMKLLA------- 246 E L +G+R S+ ++H+ ++ G+ + + D ++ L Sbjct: 136 MLELLYATGMRVSELVSLNLEHVNLENGFVRCLGKGSRERIIPVGDVAVRWLKEYLERAR 195 Query: 247 ---MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAG 301 P + F+N +++ F K A KA + K + H +R AT + G Sbjct: 196 YKLSKPGRTDALFVNQHGRRLTRQGFWKIIKKYARKAKIKKVITPHTLRHSFATHLLENG 255 Query: 302 ATAHELMATYGWKTVDQAETYTK-GADRIR 330 A + G + + YT +R+R Sbjct: 256 ADLRSVQEMLGHADISTTQIYTHLTRNRLR 285 >gi|254481807|ref|ZP_05095050.1| tyrosine recombinase XerD [marine gamma proteobacterium HTCC2148] gi|214037936|gb|EEB78600.1| tyrosine recombinase XerD [marine gamma proteobacterium HTCC2148] Length = 298 Score = 155 bits (393), Expect = 6e-36, Method: Composition-based stats. Identities = 49/268 (18%), Positives = 93/268 (34%), Gaps = 23/268 (8%) Query: 85 GSLAVNSRISFESYFDQI------IRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLT 138 L+ N+ S+ Q +KS + + + + S +F++ Sbjct: 19 KGLSDNTLSSYRRDLRQFNDWLAKSKKSSVISTDRAELQAYLGARLQQGQSQRSTARFMS 78 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRL 194 R +K+ +R+ + ++P L V+ PK R ++ D+ + + R Sbjct: 79 CARGFYKYLLREGRLTVDPTLDVDSPKLGRPLPRSLSEGDVDKLLDAPDLDIALEYRDRT 138 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIG-- 251 E L GLR S+ + + N ++ K V + + + L G Sbjct: 139 MLEMLYACGLRVSELTGLQINQISINQGVVRVFGKGSKERLVPMGEEALAWLQGYLAGPR 198 Query: 252 --------KETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAG 301 + F + ++M F K A +AG+ N S H +R AT + G Sbjct: 199 AELLKGIPSDVVFPSKRGRQMTRQTFWYRIKIYAKRAGIKQNLSPHTLRHAFATHLLNHG 258 Query: 302 ATAHELMATYGWKTVDQAETYTKGADRI 329 A + G + + YT A + Sbjct: 259 ADLRVVQMLLGHSDLTTTQIYTHVAKQR 286 >gi|70726420|ref|YP_253334.1| site-specific recombinase [Staphylococcus haemolyticus JCSC1435] gi|82582338|sp|Q4L6J7|XERD_STAHJ RecName: Full=Tyrosine recombinase xerD gi|68447144|dbj|BAE04728.1| site-specific recombinase [Staphylococcus haemolyticus JCSC1435] Length = 295 Score = 155 bits (393), Expect = 7e-36, Method: Composition-based stats. Identities = 51/277 (18%), Positives = 104/277 (37%), Gaps = 28/277 (10%) Query: 74 LISEYRKSAH-WGSLAVNSRISFESYFDQI-----IRKSGDFDYRKITTKHIRSGVESRK 127 +I EY K L+ N+ ++ + +K D+ I + I+ + S Sbjct: 4 IIEEYLKFIQIEKGLSENTIGAYRRDLKKYQLYMQEQKIAHIDF--IDRQTIQECLGSLI 61 Query: 128 HTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 +SA +F++++R ++A+R++Y A +P + +E PK + + E++ Q Sbjct: 62 DQGASAKSIARFISTIRSFHQFALREKYAAKDPTVLIETPKYEKKLPDVLDVEEVIQLLE 121 Query: 185 FWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPD 239 G + R E L +G+R ++ + + + + +K K + L D Sbjct: 122 TPDLTKNNGYRDRTILELLYATGMRVTELIQIEIDDVNLIMGFVKVFGKGNKERIIPLGD 181 Query: 240 GFMKLLAM----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AH 287 ++ L F+N + + K +A +NK+ H Sbjct: 182 TVIEYLDTYINNVRSQLLKKTVTNVLFLNLHGRPLTRQGIWKLIKQYGLRANINKTLTPH 241 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 +R AT + GA + G + + YT Sbjct: 242 TLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTH 278 >gi|228476153|ref|ZP_04060861.1| tyrosine recombinase XerD [Staphylococcus hominis SK119] gi|314936376|ref|ZP_07843723.1| tyrosine recombinase XerD [Staphylococcus hominis subsp. hominis C80] gi|228269976|gb|EEK11456.1| tyrosine recombinase XerD [Staphylococcus hominis SK119] gi|313654995|gb|EFS18740.1| tyrosine recombinase XerD [Staphylococcus hominis subsp. hominis C80] Length = 295 Score = 155 bits (392), Expect = 8e-36, Method: Composition-based stats. Identities = 43/263 (16%), Positives = 94/263 (35%), Gaps = 23/263 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKIT------TKHIRSGVESRKHTPSSAIQFLT 138 L+ N+ ++ + + I + + + + S +F++ Sbjct: 16 KGLSDNTIGAYRRDLAKYEEYMKEHKIAHIDFIDRQVIQECLGYLIDQGASAKSMARFIS 75 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRL 194 ++R ++A+R++Y A +P + +E PK + + E++ Q G + R Sbjct: 76 TIRNFHQFALREKYAAKDPTVLIETPKYEKKLPDVLEVEEVLQLLETPDLNKKNGYRDRT 135 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAM------ 247 E L +G+R S+ + ++ + + ++ K + L D ++ L Sbjct: 136 ILELLYATGMRVSELIQINIEDINLIMGFVRVFGKGNKERIIPLGDTVIEFLDTYLEKVR 195 Query: 248 ----TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAG 301 F+N + + K KA +NK+ H +R AT + G Sbjct: 196 PQLLKKTITNVLFLNMHGRPLTRQGIWKMIKQYGLKANINKTLTPHTLRHSFATHLLENG 255 Query: 302 ATAHELMATYGWKTVDQAETYTK 324 A + G + + YT Sbjct: 256 ADLRAVQEMLGHSDISTTQLYTH 278 >gi|323489648|ref|ZP_08094875.1| tyrosine recombinase xerD [Planococcus donghaensis MPA1U2] gi|323396779|gb|EGA89598.1| tyrosine recombinase xerD [Planococcus donghaensis MPA1U2] Length = 300 Score = 155 bits (392), Expect = 9e-36, Method: Composition-based stats. Identities = 53/272 (19%), Positives = 103/272 (37%), Gaps = 26/272 (9%) Query: 85 GSLAVNSRISFES----YFDQIIRKSGDFDYRKITTKHIRSGVESRKHT---PSSAIQFL 137 LA N+ S+E Y + +K+ HI + + K T P + + + Sbjct: 19 RQLADNTLSSYERDLKVYLQYLKEVEQLESLKKVERVHILNHLRHLKETTKTPRTVARHI 78 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPR 193 +S+R ++ +R+ V +P + +E P+ + + E++ + G + + Sbjct: 79 SSIRSFHQFMIRERIVETDPTVHLEMPQMDKKLPNILSIEEVDALIQVPATNKANGLRDQ 138 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKL-------- 244 E L SG+R S+ ++ + + ++ T K G + L + Sbjct: 139 AMLELLYASGMRVSECINLDIEDVHLTMGFVRCTGKGGKERIIPLGKSALTSCQTYLEQG 198 Query: 245 ---LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299 L + + FIN +++ F K A KAG+ K + H +R AT + Sbjct: 199 RIDLVKSGEKTDALFINQRGKRLTRQGFWKLLKQHAQKAGIQKELTPHTLRHSFATHLLE 258 Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRL 331 GA + G + + YT + RL Sbjct: 259 NGADIRAVQEMLGHADISTTQIYTH-VSKTRL 289 >gi|239636836|ref|ZP_04677835.1| tyrosine recombinase XerD [Staphylococcus warneri L37603] gi|239597510|gb|EEQ80008.1| tyrosine recombinase XerD [Staphylococcus warneri L37603] Length = 295 Score = 155 bits (392), Expect = 9e-36, Method: Composition-based stats. Identities = 49/275 (17%), Positives = 101/275 (36%), Gaps = 24/275 (8%) Query: 74 LISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE------SR 126 +I EY K L+VN+ ++ ++ I ++ E + Sbjct: 4 IIEEYLKFIQIEKGLSVNTIGAYRRDLNKYKEYLDLQKISNIDFVDRQTIQECLGYLIDQ 63 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + S +F++++R ++A+R++Y A +P + +E PK + + +++ + Sbjct: 64 GQSSKSIARFISTIRSFHQFALREKYAAKDPTVLIETPKYEKKLPDVLEVDEVIDLLNAP 123 Query: 187 SE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGF 241 G + R E L +G+R S+ + V+ + + ++ K V L D Sbjct: 124 DLNKNNGYRDRTMLELLYATGMRVSEVIQIEVEDVNLMMGFVRVFGKGDKERIVPLSDTV 183 Query: 242 MKLLAM----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGV 289 + L F+N + ++ K KA +NK+ H + Sbjct: 184 IDYLTTYIETVRPQLLKQTVTNVLFLNMHGKPLSRQGIWKMMKQNGLKANINKTLTPHTL 243 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 R AT + GA + G + + YT Sbjct: 244 RHSFATHLLENGADLRAVQEMLGHSDISTTQLYTH 278 >gi|304382767|ref|ZP_07365251.1| tyrosine recombinase XerD [Prevotella marshii DSM 16973] gi|304336086|gb|EFM02332.1| tyrosine recombinase XerD [Prevotella marshii DSM 16973] Length = 315 Score = 155 bits (391), Expect = 1e-35, Method: Composition-based stats. Identities = 47/274 (17%), Positives = 103/274 (37%), Gaps = 23/274 (8%) Query: 74 LISEYRKSAHWG-SLAVNSRISFESYFDQII---RKSGDFD--YRKITTKHIRSGVESRK 127 ++ Y + + + N+ ++ ++++ ++ G + +H + + Sbjct: 11 MVKAYLRYLKLQRNYSGNTLEAYRRDLNRLLVYLKQEGLTPTEVKLEHLQHFSAQLYDCG 70 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186 S + L+ +R +++ Y+ +P +E P+ T + E++ + ++ Sbjct: 71 IGARSQARVLSGVRSFYRFLQLDGYMESDPSELLESPQIGTHLPEVLSTEEVDRLENSLD 130 Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGF- 241 EG + R E L GLR ++ + +L + I+ K V + Sbjct: 131 LSKPEGQRNRAIIEVLFSCGLRVTELVSLRLSNLYLDEGFIRVLGKGRKERFVPISPRAI 190 Query: 242 ---------MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290 L + ++ F+N + T I K +AT+AG+ K S H +R Sbjct: 191 KELKLWFYDRNELKIRAGEEDYVFLNRRGVHLTRTMILIMIKRQATEAGIQKTISPHTLR 250 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK 324 AT + GA + G +++ E YT Sbjct: 251 HSFATALLEGGADLRAIQVMLGHESISTTEIYTH 284 >gi|28871200|ref|NP_793819.1| site-specific recombinase, phage integrase family [Pseudomonas syringae pv. tomato str. DC3000] gi|28854450|gb|AAO57514.1| site-specific recombinase, phage integrase family [Pseudomonas syringae pv. tomato str. DC3000] Length = 325 Score = 155 bits (391), Expect = 1e-35, Method: Composition-based stats. Identities = 65/325 (20%), Positives = 121/325 (37%), Gaps = 33/325 (10%) Query: 7 LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66 LPP + +HG Y RKG R+ S F A ++ K Sbjct: 10 LPPCMY---LKHG-AYYLVRKGKWERL------GSDFQEALLA---------YAKIVGGK 50 Query: 67 KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126 + LI E + L+ N+ +E+ ++ +F+ R++ +H+ + Sbjct: 51 SNGGMSLLIDEALDAMR-RRLSENTIKQYEAASVRLKTYLEEFEPRQVLPRHVAALKLHM 109 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 TP+ A + ++ +R++F +A+ ++ V NPC + R K R + + + Sbjct: 110 ADTPNMANRVISFLRMVFAYALERQIVDSNPCTGIRRHAEKKR-DRYISDAEFAAICAAS 168 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246 SE + +E +G R SD + + + + + QKTG + V + LL Sbjct: 169 SEYMS--VIWEMCFLTGQRISDVLNIKLSDISDVGIAFEQQKTGAKLIVAMSPDLKALLD 226 Query: 247 MTP------IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISAD 299 G F + + ++ + F+A AGV + H +R S T + Sbjct: 227 RVHALPRKVRGATLFCARSGGKPVSYDTCKMGFRAACKAAGVKGATIHDLRAKSLTDTDR 286 Query: 300 AGATAHELMATYGWKTVDQAETYTK 324 G A G + Y + Sbjct: 287 QGNNA---QMLGGHTDAKMTKRYLR 308 >gi|220929173|ref|YP_002506082.1| tyrosine recombinase XerD [Clostridium cellulolyticum H10] gi|219999501|gb|ACL76102.1| tyrosine recombinase XerD [Clostridium cellulolyticum H10] Length = 294 Score = 155 bits (391), Expect = 1e-35, Method: Composition-based stats. Identities = 41/267 (15%), Positives = 99/267 (37%), Gaps = 22/267 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKI------TTKHIRSGVESRKHTPSSAIQFLT 138 L++N+ S++ +Q I + + I T ++ + S+ + L Sbjct: 16 KRLSLNTLQSYKRDIEQYITYLKEINVTNIVNTNKTTVIAYLLHLQKKGRATSTISRNLA 75 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRL 194 S+R +++ + + + +P +E PK + + + + ++++ +G + + Sbjct: 76 SIRSFYQFLYKDKVIDNDPTSELESPKVEKKLPQILSTQEVELLLDQPKCLDLKGIRDKA 135 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL--------PDGFMKLLA 246 E L +G+R S+ + + ++ IK K T+ + + K Sbjct: 136 MLELLYATGIRVSELISLNLDDINFDLGLIKCNKGTRERTIPIGSISTAAVHEYLEKSRN 195 Query: 247 MTPIGKE--TFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302 + F+N + +++ F K +A +NK + H +R A + GA Sbjct: 196 FLIQDSQEIALFVNVNGKRLTRQGFWKIIKHYKNQAKINKDITPHTLRHSFAAHLLENGA 255 Query: 303 TAHELMATYGWKTVDQAETYTKGADRI 329 + G + + Y + A Sbjct: 256 DLRSIQEMLGHSDISSTQIYAQIAKNK 282 >gi|326202104|ref|ZP_08191974.1| tyrosine recombinase XerD [Clostridium papyrosolvens DSM 2782] gi|325987899|gb|EGD48725.1| tyrosine recombinase XerD [Clostridium papyrosolvens DSM 2782] Length = 294 Score = 155 bits (391), Expect = 1e-35, Method: Composition-based stats. Identities = 40/267 (14%), Positives = 98/267 (36%), Gaps = 22/267 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKI------TTKHIRSGVESRKHTPSSAIQFLT 138 L++N+ S++ +Q I + + I T ++ + S+ + L Sbjct: 16 KRLSLNTLQSYKRDIEQYITYLKEINVTNIANTNKTTVIAYLLHLQKKGRATSTISRNLA 75 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRL 194 S+R +++ + + + +P +E PK + + + + ++++ +G + + Sbjct: 76 SIRSFYQFLYKDKVIDNDPTSELESPKVEKKLPQILSTQEVELLLEQPKCLDLKGIRDKA 135 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL--------PDGFMKLLA 246 E L +G+R S+ + + + I+ K T+ + + K Sbjct: 136 MLELLYATGIRVSELISLNLDDINFELGFIRCNKGTRERTIPIGSISMAAVHEYLDKSRN 195 Query: 247 MTPIGKE--TFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302 + F+N + +++ F K +A +NK + H +R A + GA Sbjct: 196 FLIQDSQETALFVNVNGKRLTRQGFWKIIKHYKNQAKINKDITPHTLRHSFAAHLLENGA 255 Query: 303 TAHELMATYGWKTVDQAETYTKGADRI 329 + G + + Y + A Sbjct: 256 DLRSIQEMLGHSDISSTQIYAQIAKNK 282 >gi|260910520|ref|ZP_05917188.1| integrase/recombinase XerD [Prevotella sp. oral taxon 472 str. F0295] gi|260635362|gb|EEX53384.1| integrase/recombinase XerD [Prevotella sp. oral taxon 472 str. F0295] Length = 304 Score = 155 bits (391), Expect = 1e-35, Method: Composition-based stats. Identities = 50/278 (17%), Positives = 104/278 (37%), Gaps = 23/278 (8%) Query: 70 TLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRK---SGDF--DYRKITTKHIRSGV 123 T+ ++ Y + +L+ N+ ++ + ++ G + + + + Sbjct: 7 TVDNMVKAYMRYLKLERNLSQNTIEAYRNDLRWLLAYVNYHGLKVEAVKLEDLDNFSASL 66 Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 ++ TP S + L+ +R FK+ + ++ +P + P + + ++ + + Sbjct: 67 HDQRITPRSQARILSGVRSFFKFLLLDGFIDADPTELLVSPHVRNALPDVLSTAEVDRLE 126 Query: 184 SFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVEL- 237 + EG + R E L GLR S+ + +L ++ T K V + Sbjct: 127 ASIDLSKWEGQRNRAIIEVLFSCGLRVSELVNLKLSNLYVEEKFVRVTGKGDKERLVPIS 186 Query: 238 ---PDGF------MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SA 286 D + + P ++ F+N + T I K +A AG+ K S Sbjct: 187 SRALDELNAWFADRNAMRIKPGEEDYVFLNRRGAHLTRTMILIMIKRQAVAAGITKTISP 246 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R AT + GA + A G + + E YT Sbjct: 247 HTLRHSFATALLEGGADLIAIQAMMGHEDIATTEIYTH 284 >gi|300725867|ref|ZP_07059331.1| tyrosine recombinase XerD [Prevotella bryantii B14] gi|299776855|gb|EFI73401.1| tyrosine recombinase XerD [Prevotella bryantii B14] Length = 304 Score = 154 bits (390), Expect = 1e-35, Method: Composition-based stats. Identities = 47/277 (16%), Positives = 99/277 (35%), Gaps = 24/277 (8%) Query: 86 SLAVNSRISFESYFDQIIRKSGD-----FDYRKITTKHIRSGVESRKHTPSSAIQFLTSM 140 + + N+ ++ ++ + D + + + + + S + L+ + Sbjct: 24 NYSANTLEAYRHDIRYLLEFFEEHQQNPIDAKLEDLELFATSIHEKGIGARSQARILSGV 83 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRLAF 196 R +++ + Y+ +P +E P T E++ + ++ EG + + Sbjct: 84 RSFYRFLQLEGYIKDDPTELLESPHLGEHLPTYLTTEEVDRLEASIDLSKWEGQRNKAII 143 Query: 197 EFLLYSGLRCSDSCRAGVQH-LQNNIFSIKTQKTGTIITVELPDGF----------MKLL 245 E L GLR S+ + + + F K V + + L+ Sbjct: 144 EVLFSCGLRVSELVNLKISNCFMDEKFVRVLGKGSKERLVPISENAIREVNYWLMDRNLM 203 Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGAT 303 + P ++ F+N + T I K +A AG+ K S H +R AT GA Sbjct: 204 VIKPGEEDYLFLNRRGSHLTRTMILIMIKRQAVAAGITKIISPHTLRHSFATALLKGGAD 263 Query: 304 AHELMATYGWKTVDQAETYTK--GADRIRLGIKNSRR 338 + G + + E YT +D R +++ R Sbjct: 264 LRAIQVMLGHEDIGTTEIYTHMETSDLKREILEHHPR 300 >gi|325684289|gb|EGD26462.1| integrase/recombinase XerD [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 301 Score = 154 bits (390), Expect = 1e-35, Method: Composition-based stats. Identities = 45/283 (15%), Positives = 105/283 (37%), Gaps = 24/283 (8%) Query: 75 ISEYRK-SAHWGSLAVNSRISFESYFDQII-----RKSGDFDYRKITTKHIRSGVESRKH 128 I++Y + S L+ N+ ++ + + + + + + Sbjct: 11 INDYLRYSQIERGLSPNTIAAYHQDLLEFLAFVKEEQMPAWPLEAVEIDAFLAKERDLGK 70 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----QQFKS 184 SS + ++++ ++W VRQ+ +A++P ++ PKR+ T+ ++ +Q Sbjct: 71 ANSSISRLVSTLSRFYQWLVRQQLIALDPMSQIDAPKREKRMPLALTEAEVGKLLEQPDL 130 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMK 243 G + R E L +G+R S++ + + ++ IK K + + + Sbjct: 131 TTDLGIRDRALVELLYATGIRVSEAVNLKLADVHADLQLIKVLGKGNKERLIPVSALALD 190 Query: 244 LLAM-TPIGK----------ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290 + P+ + F+N+ ++ K +AG+ K + H +R Sbjct: 191 WIKRYLPVRDQQLLKRGKSSDYLFLNSRGGQLTRQAVWQKIKKYCQQAGIAKDVTPHTLR 250 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 AT + GA + G + + YT + L + Sbjct: 251 HSFATHLLEHGADLRVVQEILGHTDISTTQIYTNLTQKHILDV 293 >gi|326572192|gb|EGE22188.1| tyrosine recombinase XerD [Moraxella catarrhalis BC7] Length = 307 Score = 154 bits (390), Expect = 1e-35, Method: Composition-based stats. Identities = 53/274 (19%), Positives = 98/274 (35%), Gaps = 23/274 (8%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH---TP 130 +SE+R + L++ +R ++ ++ + D +R+ + K + Sbjct: 21 YLSEFRAAMLARGLSIATRNAYSQDV-RLCIRLSDMPVNLWQPSDVRNHLMCLKDAKKSE 79 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-- 188 S + L S+ F W + Y NPC S++ PK + +++++ Sbjct: 80 RSIARVLASLCQFFLWQIESGYREDNPCESIKTPKLGKTLPKTLSEQEVSSLLDAPDISS 139 Query: 189 --GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKL 244 G + + E L GLR S+ ++HL S+ T K + + L + + Sbjct: 140 VRGLRDKAMLEVLYACGLRVSELTSLSLEHLNLTAGWLSV-TGKGNKMRLIPLGEYALSA 198 Query: 245 LA----------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKF 292 L + + F+ M F K A AG+N S H +R Sbjct: 199 LNEYLAVRGSLLIGKKDCQAVFLTEQGGYMTRHNFWHLIKKYALMAGINTAISPHTLRHA 258 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGA 326 AT + GA + G + + YT A Sbjct: 259 FATHLVNHGADLRSVQLLLGHSDLSTTQIYTHVA 292 >gi|81428639|ref|YP_395639.1| site-specific DNA tyrosine recombinase, XerD [Lactobacillus sakei subsp. sakei 23K] gi|78610281|emb|CAI55330.1| Site-specific DNA tyrosine recombinase, XerD [Lactobacillus sakei subsp. sakei 23K] Length = 294 Score = 154 bits (390), Expect = 1e-35, Method: Composition-based stats. Identities = 47/276 (17%), Positives = 95/276 (34%), Gaps = 23/276 (8%) Query: 72 KWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR-----SGVES 125 LI +Y L+ N+R S+ Q + T + Sbjct: 2 DDLIQDYLHYLKIERGLSENTRQSYRQDLKQYQQFLVSQKLTSFTEDRFIVLGFLQAQTT 61 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + SS + ++++R +++ R+ + +P L ++ PK+ + E++++ Sbjct: 62 AQKAQSSITRSISTLRKFYQYLAREGRIQKDPMLQIDSPKQGRHLPAVLSSEEIERLLKT 121 Query: 186 ----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG 240 G + R E L +GLR S+ + L ++ I+T K + + D Sbjct: 122 PDTSTPLGLRDRAILEVLYATGLRVSELVHLKLTDLHLSLGLIQTLGKGDKERIIPIGDV 181 Query: 241 FMKLLA----------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHG 288 + + F+N + KA AG++K + H Sbjct: 182 AVDWINQYLERSRNRLTKGKDSPYLFVNFHGNGLTRQGIWKNLKAIVQAAGIDKDVTPHT 241 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 +R AT+ + GA + G + + YT Sbjct: 242 LRHSFATVLLENGADLRIVQELLGHSDISTTQIYTH 277 >gi|88706916|ref|ZP_01104615.1| Tyrosine recombinase xerD [Congregibacter litoralis KT71] gi|88698838|gb|EAQ95958.1| Tyrosine recombinase xerD [Congregibacter litoralis KT71] Length = 302 Score = 154 bits (390), Expect = 1e-35, Method: Composition-based stats. Identities = 54/288 (18%), Positives = 104/288 (36%), Gaps = 26/288 (9%) Query: 74 LISEYRKSAHW--GSLAVNSRISFESYFDQ-----IIRKSGDFDYRKITTKHIRSGVESR 126 L+ Y A W L+ N+ ++ + R+ + + + + + Sbjct: 12 LLESYL-DAVWMEKGLSENTLAAYRRDLQAFARWALSRQRTATQIERSDIEAYLASLLEK 70 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF- 185 K +P SA + L+ +R +++ +R + +P L ++ P+ + ++ D+ Sbjct: 71 KSSPRSAARALSCLRGFYRYLLRSGQLDTDPTLGLDSPRLGRPLPKTLSEVDVDALLKAP 130 Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGF 241 G + R E L GLR S+ + L N ++ K G V + + Sbjct: 131 KLDDPIGFRDRCMLELLYACGLRVSELTGLTLSQLSLNQGVLRIVGKGGKERLVPIGEEA 190 Query: 242 MKLLAM----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289 + L + F + ++M F K A AG+ K S H + Sbjct: 191 LHWLQRFLRDVRPELLGETSSDVLFPSRRAREMTRQTFWHRIKQHAMTAGIRKPISPHVL 250 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 R AT + GA + G + + YT A R RL +++ Sbjct: 251 RHAFATHLVNHGADLRVVQLLLGHSDLSTTQIYTHVA-RQRLQSLHAK 297 >gi|217963893|ref|YP_002349571.1| tyrosine recombinase XerD [Listeria monocytogenes HCC23] gi|290892115|ref|ZP_06555111.1| integrase/recombinase XerD [Listeria monocytogenes FSL J2-071] gi|217333163|gb|ACK38957.1| tyrosine recombinase XerD [Listeria monocytogenes HCC23] gi|290558238|gb|EFD91756.1| integrase/recombinase XerD [Listeria monocytogenes FSL J2-071] gi|307571537|emb|CAR84716.1| integrase/recombinase [Listeria monocytogenes L99] Length = 297 Score = 154 bits (390), Expect = 1e-35, Method: Composition-based stats. Identities = 50/288 (17%), Positives = 105/288 (36%), Gaps = 33/288 (11%) Query: 73 WLISEYRKSAHW----GSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIRSGVE 124 LI ++ H+ L+ N+ ++E + G D + I + Sbjct: 3 DLIEDFL---HFLIVERGLSANTIKAYERDLRYFVSYMDVAKGLTDPNTLERSDIVGFMA 59 Query: 125 ---SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 +P S +++ S+R F + + ++ +P + +E PK+ + +D+++ Sbjct: 60 FARQEGKSPRSVARYIASLRSFFHYLMHDGKMSHDPMIQIETPKQAQGLPKVLNLDDVEK 119 Query: 182 FK----SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE 236 + G + + E L +GLR ++ + L ++ I+T K + Sbjct: 120 LLSSSDTSTPLGLRDQAMMEILYATGLRVTELVSLKMDDLHLHMGFIQTIGKGDKERIIP 179 Query: 237 L-----------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284 L + L + F+N+ Q + F K A ++G+ K Sbjct: 180 LGKTATTVLEKYLEEARPKLRRPKYRNDFVFLNHHGQGLTRQGFWKILKGIAKESGIEKP 239 Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 + H +R AT + GA + G + + YT ++RL Sbjct: 240 ITPHTLRHSFATHLLENGADLRSVQELLGHADISTTQIYTH-VTKLRL 286 >gi|114331692|ref|YP_747914.1| tyrosine recombinase XerD [Nitrosomonas eutropha C91] gi|114308706|gb|ABI59949.1| tyrosine recombinase XerD [Nitrosomonas eutropha C91] Length = 305 Score = 154 bits (390), Expect = 2e-35, Method: Composition-based stats. Identities = 52/277 (18%), Positives = 102/277 (36%), Gaps = 26/277 (9%) Query: 86 SLAVNSRISFESYFDQIIRKSGDF--------DYRKITTKHIRSGVESRKHTPSSAIQFL 137 L+ N+ S+ + Q++ D + S ++ S+A + L Sbjct: 23 GLSRNTLASYRADLMQLVEWLSRREQTNGLLNDVTQADLLAFLSDRIAQGAKASTASRAL 82 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPR 193 +R +++ +RQ + I+P ++++ PK + +++ + G + R Sbjct: 83 ACIRRFYRYLLRQGKILIDPAVNIDSPKVSRHLPVSLAESEVEALLAVSDIKQPLGLRDR 142 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDG--------FMKL 244 E L +GLR S+ + ++ ++ ++ K + L D + Sbjct: 143 AMLEILYAAGLRVSELVSLAISQVRQDMGVVRILGKGNKERLIPLGDEALYWLDLYLREA 202 Query: 245 LAMTPIGKE--TFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300 + GK F+ M F K A +AG+ K S H +R AT + Sbjct: 203 RPILLAGKHSNMLFVTTRGDAMTRQAFWYLIKRHARQAGIVKQLSPHTLRHAFATHLLNH 262 Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 GA + G + + YT A R RL ++R Sbjct: 263 GADLRVVQLLLGHSDISTTQIYTHVA-RERLRQLHAR 298 >gi|295426297|ref|ZP_06818957.1| tyrosine recombinase XerD [Lactobacillus amylolyticus DSM 11664] gi|295064036|gb|EFG54984.1| tyrosine recombinase XerD [Lactobacillus amylolyticus DSM 11664] Length = 299 Score = 154 bits (390), Expect = 2e-35, Method: Composition-based stats. Identities = 49/284 (17%), Positives = 101/284 (35%), Gaps = 25/284 (8%) Query: 75 ISEYRKSAH-WGSLAVNSRISFESYFDQII-----RKSGDFDYRKITTKHIRSGVESRKH 128 I +Y + L+ N+ ++ + + K + + + + Sbjct: 8 IEDYLRFGQIERGLSENTITAYRQDLTEFLNFLQQEKIDSWPTEAVEIDAFLARQKDLNK 67 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-- 186 SS + ++S+R ++W RQ +NP + ++ PK++ T+++M + + Sbjct: 68 ASSSISRMISSLRKFYQWLARQNIQKLNPMIEIDSPKKQRRLPVALTQDEMDRLLAAPNV 127 Query: 187 --SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVEL----PD 239 G + R E + +G+R S+ ++ + ++ IK K V + D Sbjct: 128 EKKLGLRDRALLEMMYATGMRVSEVINLQLEDVHPDLKLIKVFGKGSKERLVPVSNIALD 187 Query: 240 GFMK--------LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289 K L+ E F+NN + K A +NK + H + Sbjct: 188 WLAKYEKEVRESLVLKQGRNTEFVFLNNRGGSLTRQAVWQIIKHYCQLANINKDVTPHTL 247 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 R AT + GA + G + + YT + L + Sbjct: 248 RHTFATHLLENGADLRVVQEILGHSDISTTQIYTNLTQKHILEV 291 >gi|49085926|gb|AAT51315.1| PA3738 [synthetic construct] Length = 299 Score = 154 bits (390), Expect = 2e-35, Method: Composition-based stats. Identities = 55/288 (19%), Positives = 101/288 (35%), Gaps = 26/288 (9%) Query: 74 LISEYRKSAHW--GSLAVNSRISFESYFDQIIRKSGDFDYR-----KITTKHIRSGVESR 126 LI + A W LA N+R ++ + Q R + + + Sbjct: 8 LIDRFL-DALWLEKGLADNTREAYRNDLQQFNAWLDGRGLRLEGIGRDAILDHLAWRLEQ 66 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF- 185 + S +FL+ +R +++ +R +A +P L V+ P+ + ++ D++ + Sbjct: 67 GYKARSTARFLSGLRGFYRYCLRDGLIAEDPTLQVDLPQLGKPLPKSLSEADVEALLAAP 126 Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGF 241 G + R E L GLR S+ ++ + +K K V L + Sbjct: 127 EVDDPLGLRDRTMLEVLYACGLRVSELVGLTLEQVNLRQGVVKVFGKGSKERLVPLGEEA 186 Query: 242 MKLLAM----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGV 289 + L + F + ++M F K A A + S H + Sbjct: 187 IGWLERYLREARGDLLGGRPSDVLFPSLRGEQMTRQTFWHRIKHHAQVAAIGTSISPHTL 246 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 R AT + GA + G + + YT A R RL ++R Sbjct: 247 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHIA-RARLQDLHAR 293 >gi|330686041|gb|EGG97664.1| tyrosine recombinase XerD [Staphylococcus epidermidis VCU121] Length = 295 Score = 154 bits (390), Expect = 2e-35, Method: Composition-based stats. Identities = 49/275 (17%), Positives = 102/275 (37%), Gaps = 24/275 (8%) Query: 74 LISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE------SR 126 +I EY K L+VN+ ++ ++ I ++ E + Sbjct: 4 IIEEYLKFIQIEKGLSVNTIGAYRRDLNKYKEYLTLQKISNIDFVDRQTIQECLGYLIDQ 63 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + S +F++++R ++A+R++Y A +P + +E PK + + +++ + + Sbjct: 64 GQSSKSIARFISTIRSFHQFALREKYAAKDPTVLIETPKYEKKLPDVLEVDEVIELLNAP 123 Query: 187 SE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGF 241 G + R E L +G+R S+ + V+ + + ++ K V L D Sbjct: 124 DLNKNNGYRDRTMLELLYATGMRVSEVIQIEVEDVNLMMGFVRVFGKGDKERIVPLGDTV 183 Query: 242 MKLLAM----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGV 289 + L F+N + ++ K KA +NK+ H + Sbjct: 184 IDYLTTYIETVRPQLLKQTVTNVLFLNMHGKPLSRQGIWKMIKQNGLKANINKTLTPHTL 243 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 R AT + GA + G + + YT Sbjct: 244 RHSFATHLLENGADLRAVQEMLGHSDISTTQLYTH 278 >gi|116491033|ref|YP_810577.1| tyrosine recombinase XerD subunit [Oenococcus oeni PSU-1] gi|290890513|ref|ZP_06553588.1| hypothetical protein AWRIB429_0978 [Oenococcus oeni AWRIB429] gi|116091758|gb|ABJ56912.1| tyrosine recombinase XerD subunit [Oenococcus oeni PSU-1] gi|290479909|gb|EFD88558.1| hypothetical protein AWRIB429_0978 [Oenococcus oeni AWRIB429] Length = 302 Score = 154 bits (389), Expect = 2e-35, Method: Composition-based stats. Identities = 55/286 (19%), Positives = 109/286 (38%), Gaps = 25/286 (8%) Query: 67 KPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGV 123 K + ++ +Y + L NS S++ + + K+ I + Sbjct: 4 KKNQFENVLLDYTRYLRTEQGLLENSIKSYKQDLSEFGAYIQKENILLVKVDRFTILDWL 63 Query: 124 ESRKHTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 +++ S ++S+R F + + + I+P L V PK+ + + T +++ Sbjct: 64 NYLQNSGKSNNSIVHMVSSLRKFFAYLSDDQQIQIDPMLKVTTPKKNSHLPQVLTATEIE 123 Query: 181 QFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236 + G + R E + +G R S+ C + L + + I T G + Sbjct: 124 AVLAVPDISTTLGLRNRALLETMYATGFRVSEICNLKLADLHDELGLITTIGKGQKQRI- 182 Query: 237 LPDGFMKLLAMTPIGKET------------FFINNDKQKMNATQFSIWFKAKATKAGVNK 284 +P G M LL ++ KE+ F+N+ +++ K A KAG++K Sbjct: 183 VPIGEMSLLYISKYFKESRPILLKDKESPYLFLNDHGHRISRQGIFKLVKEIAIKAGIDK 242 Query: 285 --SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 S H +R AT + GA + G + + YT + + Sbjct: 243 DISPHTLRHSFATNLLENGADLRIVQELLGHSDISTTQIYTHVSQK 288 >gi|254429866|ref|ZP_05043573.1| tyrosine recombinase XerD [Alcanivorax sp. DG881] gi|196196035|gb|EDX90994.1| tyrosine recombinase XerD [Alcanivorax sp. DG881] Length = 312 Score = 154 bits (389), Expect = 2e-35, Method: Composition-based stats. Identities = 51/284 (17%), Positives = 97/284 (34%), Gaps = 30/284 (10%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR-----SGVESR 126 WL ++ + L+ +S ++ Q+ + + + + + Sbjct: 19 SWLDQQWLE----KGLSEHSLSNYRRDISQLAVWLQHQQATLLACERYQLLEFLAARHQQ 74 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF- 185 + S + L++++ ++W R+ +A +P L +ERPK + ++ D++ + Sbjct: 75 GLSARSVARQLSAVKSFYRWLKREGRIAEDPALLIERPKLGRPLPKTLSEADVEALLAAP 134 Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGF 241 G + R E L +GLR ++ + I+ K V L + Sbjct: 135 DLSTPLGLRDRAMLEVLYATGLRVTELVTLTQSQINPRQGLIRVIGKGDKERLVPLGEEA 194 Query: 242 MKLLAMTPIGK--------------ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--S 285 + LA E F + M F K A AGV K S Sbjct: 195 LHWLARYAQEGRPQLLAADQQGGNQELLFPSRRGTCMTRQTFWHRIKQLAVVAGVQKKLS 254 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 H +R AT + GA + G + + YT A + Sbjct: 255 PHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVAQQR 298 >gi|329894263|ref|ZP_08270149.1| Site-specific recombinase XerD [gamma proteobacterium IMCC3088] gi|328923194|gb|EGG30516.1| Site-specific recombinase XerD [gamma proteobacterium IMCC3088] Length = 298 Score = 154 bits (389), Expect = 2e-35, Method: Composition-based stats. Identities = 49/284 (17%), Positives = 96/284 (33%), Gaps = 18/284 (6%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130 + L E S + S ++++ D+ + + + +P Sbjct: 11 IDALWMERGLSDNSLSAYRTDLAHYQAWLDKAVAGRQLRQADGADLQRYLGLRLKQGRSP 70 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---- 186 S + L+ +R +++A+RQ + +P VE PK + +++D+ S Sbjct: 71 RSTARLLSCLRSFYRYALRQNWCVTDPTADVESPKMGRALPKSLSEQDVDALLSAPNVES 130 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLL 245 + + E L GLR S+ ++ N ++ K V + + + L Sbjct: 131 PIELRDKAMLELLYACGLRVSELVGLTQLNISVNQGVVRVLGKGSKERLVPMGEEALDWL 190 Query: 246 AMTPIGKETFFINN----------DKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFS 293 + Q M F K A +AG+ S H +R Sbjct: 191 TRYLREGRPLIVEKKANDWLFPSIRGQGMTRQTFWHRIKLYAKRAGIKAPLSPHTLRHAF 250 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 AT + GA + G + + YT A + RL +++ Sbjct: 251 ATHLLNHGADLRVVQMLLGHSDLTTTQIYTHVAQQ-RLQDLHAK 293 >gi|51892959|ref|YP_075650.1| recombinase [Symbiobacterium thermophilum IAM 14863] gi|51856648|dbj|BAD40806.1| recombinase [Symbiobacterium thermophilum IAM 14863] Length = 294 Score = 154 bits (389), Expect = 2e-35, Method: Composition-based stats. Identities = 50/276 (18%), Positives = 105/276 (38%), Gaps = 25/276 (9%) Query: 73 WLISEY--RKSAHWGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVE---S 125 LI E+ S LA N+ S+ Q + G+ D ++ I + + Sbjct: 3 NLIHEFINYLSVE-RGLATNTLESYGRDLRQYYQYLGEDQVDLDAVSRSTIINYLMYLQK 61 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + ++ + L +++ +++ VR++ + +P ++E PK + R T ++++ + Sbjct: 62 QGKATATIARRLAALKAFYQFLVREKRIKTDPTANLESPKLEKRLPRVLTVSEVERLLAQ 121 Query: 186 ----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDG 240 G + R E L +G+R S+ ++ + I+ T K V L Sbjct: 122 PDPSLPAGLRDRAMLELLYATGIRVSELVSLNIEDVNLETGYIRCTGKGSKERIVPLGSL 181 Query: 241 FMKLLA----------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHG 288 +K + + + F+N+ ++ F K A A ++K + H Sbjct: 182 AIKWVKEYLQQGRPKLVKDREEAALFVNHHGHRLTRQGFWKIVKKYAEDARIDKEITPHT 241 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 +R AT + GA + G + + YT Sbjct: 242 LRHSFATHLLENGADLRSVQEMLGHADISTTQIYTH 277 >gi|30249429|ref|NP_841499.1| phage integrase domain/SAM domain-containing protein [Nitrosomonas europaea ATCC 19718] gi|30138792|emb|CAD85369.1| Phage integrase:Phage integrase N-terminal SAM-like domain [Nitrosomonas europaea ATCC 19718] Length = 318 Score = 154 bits (389), Expect = 2e-35, Method: Composition-based stats. Identities = 51/277 (18%), Positives = 103/277 (37%), Gaps = 26/277 (9%) Query: 86 SLAVNSRISFESYFDQIIRKSGDFD-----YRKITTKHIRSGVESR---KHTPSSAIQFL 137 L+ N+ S+ + Q++ G +T + + + R S+ + L Sbjct: 36 GLSRNTLASYRADLMQLVEWLGRQPRTNGSLSDVTQADLLAFLSDRIGQGVKASTTCRAL 95 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS----FWSEGSQPR 193 T ++ +++ +RQ + +P +++ PK T+ +++ + G + R Sbjct: 96 TCIKRFYRYLLRQGKILADPATNIDSPKISRHLPVSLTETEVEALLAAPDTRQPLGLRDR 155 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDG--------FMKL 244 E L +GLR S+ + ++ ++ ++ K + L + + Sbjct: 156 AMLEILYAAGLRVSELVGLSISQIRQDMGVVRILGKGSKERLIPLGEEALHWLSLYLQEA 215 Query: 245 LAMTPIGKE--TFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300 + GK F+ M F K A +AG+ K S H +R AT + Sbjct: 216 RPVLLAGKHSNMSFVTTRGDAMTRQAFWYLIKRHARQAGIVKLLSPHTLRHAFATHLLNH 275 Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 GA + G + + YT A R RL ++R Sbjct: 276 GADLRVVQLLLGHSDISTTQIYTHVA-RERLKQLHAR 311 >gi|15598933|ref|NP_252427.1| site-specific tyrosine recombinase XerD [Pseudomonas aeruginosa PAO1] gi|107103253|ref|ZP_01367171.1| hypothetical protein PaerPA_01004322 [Pseudomonas aeruginosa PACS2] gi|116051736|ref|YP_789425.1| site-specific tyrosine recombinase XerD [Pseudomonas aeruginosa UCBPP-PA14] gi|218889984|ref|YP_002438848.1| site-specific tyrosine recombinase XerD [Pseudomonas aeruginosa LESB58] gi|254236648|ref|ZP_04929971.1| integrase/recombinase XerD [Pseudomonas aeruginosa C3719] gi|254242429|ref|ZP_04935751.1| integrase/recombinase XerD [Pseudomonas aeruginosa 2192] gi|296387753|ref|ZP_06877228.1| site-specific tyrosine recombinase XerD [Pseudomonas aeruginosa PAb1] gi|313109145|ref|ZP_07795116.1| integrase/recombinase XerD [Pseudomonas aeruginosa 39016] gi|34223067|sp|Q9HXQ6|XERD_PSEAE RecName: Full=Tyrosine recombinase xerD gi|9949906|gb|AAG07125.1|AE004793_2 integrase/recombinase XerD [Pseudomonas aeruginosa PAO1] gi|115586957|gb|ABJ12972.1| integrase/recombinase XerD [Pseudomonas aeruginosa UCBPP-PA14] gi|126168579|gb|EAZ54090.1| integrase/recombinase XerD [Pseudomonas aeruginosa C3719] gi|126195807|gb|EAZ59870.1| integrase/recombinase XerD [Pseudomonas aeruginosa 2192] gi|218770207|emb|CAW25969.1| integrase/recombinase XerD [Pseudomonas aeruginosa LESB58] gi|310881618|gb|EFQ40212.1| integrase/recombinase XerD [Pseudomonas aeruginosa 39016] Length = 298 Score = 154 bits (389), Expect = 2e-35, Method: Composition-based stats. Identities = 55/288 (19%), Positives = 101/288 (35%), Gaps = 26/288 (9%) Query: 74 LISEYRKSAHW--GSLAVNSRISFESYFDQIIRKSGDFDYR-----KITTKHIRSGVESR 126 LI + A W LA N+R ++ + Q R + + + Sbjct: 8 LIDRFL-DALWLEKGLADNTREAYRNDLQQFNAWLDGRGLRLEGIGRDAILDHLAWRLEQ 66 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF- 185 + S +FL+ +R +++ +R +A +P L V+ P+ + ++ D++ + Sbjct: 67 GYKARSTARFLSGLRGFYRYCLRDGLIAEDPTLQVDLPQLGKPLPKSLSEADVEALLAAP 126 Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGF 241 G + R E L GLR S+ ++ + +K K V L + Sbjct: 127 EVDDPLGLRDRTMLEVLYACGLRVSELVGLTLEQVNLRQGVVKVFGKGSKERLVPLGEEA 186 Query: 242 MKLLAM----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGV 289 + L + F + ++M F K A A + S H + Sbjct: 187 IGWLERYLREARGDLLGGRPSDVLFPSLRGEQMTRQTFWHRIKHHAQVAAIGTSISPHTL 246 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 R AT + GA + G + + YT A R RL ++R Sbjct: 247 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHIA-RARLQDLHAR 293 >gi|218778680|ref|YP_002429998.1| tyrosine recombinase XerD [Desulfatibacillum alkenivorans AK-01] gi|218760064|gb|ACL02530.1| tyrosine recombinase XerD [Desulfatibacillum alkenivorans AK-01] Length = 298 Score = 154 bits (389), Expect = 2e-35, Method: Composition-based stats. Identities = 52/288 (18%), Positives = 98/288 (34%), Gaps = 25/288 (8%) Query: 74 LISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS------GVESR 126 LI +Y L+ N+ ++ +T + ++ Sbjct: 7 LIDQYMNYLLVEKGLSQNTLEAYGKDLGVFTDFLQKRKIDDLTKADTPDIVQHLIDLRAQ 66 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + + L ++R LF + +++ + NP V+ PK + +++Q Sbjct: 67 GLGARTRARHLVAIRGLFSFLEQEKIIKHNPAKLVDLPKTGLHLPDVISVVEIEQLLEAP 126 Query: 187 SE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-IITVELPDGF 241 +E G++ R E SGLR S+ VQ + + ++ G+ V + Sbjct: 127 NEMDILGARDRAMMELAYASGLRVSELINVRVQDIHLDAGFVRVMGKGSKERIVPMGRQA 186 Query: 242 MKLLAM----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289 + + E F+ + M F K A KAG+ K + H + Sbjct: 187 REKIKTYMDHDRPILLKGKPGEYLFVVRGGRPMTRQAFWKLLKKYALKAGIAKNITPHTL 246 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 R A+ + GA + G + + YT A R RL + R Sbjct: 247 RHSFASHLLEGGADLRVVQEMLGHVDISTTQIYTHVA-RERLIEIHER 293 >gi|118586872|ref|ZP_01544306.1| integrase/recombinase [Oenococcus oeni ATCC BAA-1163] gi|118432704|gb|EAV39436.1| integrase/recombinase [Oenococcus oeni ATCC BAA-1163] Length = 302 Score = 154 bits (389), Expect = 2e-35, Method: Composition-based stats. Identities = 55/286 (19%), Positives = 109/286 (38%), Gaps = 25/286 (8%) Query: 67 KPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGV 123 K + ++ +Y + L NS S++ + + K+ I + Sbjct: 4 KKNQFENVLLDYTRYLRTERGLLENSIKSYKQDLSEFGAYIQKENILLVKVDRFTILDWL 63 Query: 124 ESRKHTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 +++ S ++S+R F + + + I+P L V PK+ + + T +++ Sbjct: 64 NYLQNSGKSNNSIVHMVSSLRKFFAYLSDDQQIQIDPMLKVTTPKKNSHLPQVLTATEIE 123 Query: 181 QFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236 + G + R E + +G R S+ C + L + + I T G + Sbjct: 124 AVLAVPDISTTLGLRNRALLETMYATGFRVSEICNLKLADLHDELGLITTIGKGQKQRI- 182 Query: 237 LPDGFMKLLAMTPIGKET------------FFINNDKQKMNATQFSIWFKAKATKAGVNK 284 +P G M LL ++ KE+ F+N+ +++ K A KAG++K Sbjct: 183 VPIGEMSLLYISKYFKESRPILLKDKESPYLFLNDHGHRISRQGIFKLVKEIAIKAGIDK 242 Query: 285 --SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 S H +R AT + GA + G + + YT + + Sbjct: 243 DISPHTLRHSFATNLLENGADLRIVQELLGHSDISTTQIYTHVSQK 288 >gi|6648971|gb|AAF21314.1| site-specific recombinase [Staphylococcus aureus] Length = 293 Score = 154 bits (389), Expect = 2e-35, Method: Composition-based stats. Identities = 45/275 (16%), Positives = 98/275 (35%), Gaps = 24/275 (8%) Query: 74 LISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE------SR 126 +I EY + L+ N+ ++ + + I + E + Sbjct: 4 IIEEYLRFIQIEKGLSSNTIGAYRRDLKKYQDYMTEHHISHIDFIDRQLIQECLGHLIDQ 63 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + S +F++++R ++A+R++Y A +P + ++ PK + +++ Sbjct: 64 GQSAKSIARFISTIRSFHQFAIREKYAAKDPTVLLDSPKYDKKLPDVLNVDEVLALLETP 123 Query: 187 SE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGF 241 G + R E L +G+R S+ ++++ + ++ K V L D Sbjct: 124 DLNKINGYRDRTMLELLYATGMRVSELIHLELENVNLIMGFVRVFGKGDKERIVPLGDAV 183 Query: 242 MKLLAM----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGV 289 ++ L E F+N + ++ K KA + K+ H + Sbjct: 184 IEYLTTYIETIRPQLLKKTVTEVLFLNMHGKPLSRQAIWKMIKQNGVKANIKKTLTPHTL 243 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 R AT + GA + G + + YT Sbjct: 244 RHSFATHLLENGADLRAVQEMLGHSDISTTQLYTH 278 >gi|78042632|ref|YP_360783.1| tyrosine recombinase XerD [Carboxydothermus hydrogenoformans Z-2901] gi|77994747|gb|ABB13646.1| tyrosine recombinase XerD [Carboxydothermus hydrogenoformans Z-2901] Length = 287 Score = 154 bits (389), Expect = 2e-35, Method: Composition-based stats. Identities = 51/263 (19%), Positives = 96/263 (36%), Gaps = 18/263 (6%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITT----KHIRSGVESRKHTPSSAIQFLTSM 140 ++N+ +S+ ++ + + I + +RK P+S + L ++ Sbjct: 13 KGFSLNTLLSYRRDLEKFVSFLEKRNISIIDATSKDIKLYLQDLARKLKPASVARNLAAI 72 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRLAF 196 R +K+ +R++ V NP L V+ PK + + E++ EG + R Sbjct: 73 RSFYKYLLREKIVGENPALDVDGPKLGLKLPEILSYEEIDLLLKAPDLSTWEGVRDRAML 132 Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV--------ELPDGFMKLLAMT 248 E L +GLR S+ + +L + +K G + + + ++ L A Sbjct: 133 ELLYATGLRVSELVNLELPNLYLDERYVKILGKGAKMRIVPFGEVAAHYLNQYLALRAKR 192 Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHE 306 FI F K KAG+ N + H +R AT + GA Sbjct: 193 KSNSLKLFITRKGSGFTRQGFWKMLKRYGQKAGIVKNLTPHLIRHSFATHLLENGADLRI 252 Query: 307 LMATYGWKTVDQAETYTKGADRI 329 + G ++ + YT R Sbjct: 253 VQELLGHSFIETTQIYTHLTTRK 275 >gi|82751090|ref|YP_416831.1| site-specific recombinase [Staphylococcus aureus RF122] gi|82656621|emb|CAI81047.1| site-specific recombinase [Staphylococcus aureus RF122] Length = 295 Score = 154 bits (389), Expect = 2e-35, Method: Composition-based stats. Identities = 45/275 (16%), Positives = 98/275 (35%), Gaps = 24/275 (8%) Query: 74 LISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE------SR 126 +I EY + L+ N+ ++ + + I + E + Sbjct: 4 IIEEYLRFIQIEKGLSSNTIGAYRRDLKKYQDYMTEHHISHIDFIDRQLIQECLGHLIDQ 63 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + S +F++++R ++A+R++Y A +P + ++ PK + +++ Sbjct: 64 GQSAKSIARFISTIRSFHQFAIREKYAAKDPTVLLDSPKYDKKLPDVLNVDEVLALLETL 123 Query: 187 SE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGF 241 G + R E L +G+R S+ ++++ + ++ K V L D Sbjct: 124 DLNKINGYRDRTMLELLYATGMRVSELIHLELENVNLIMGFVRVFGKGDKERIVPLGDAV 183 Query: 242 MKLLAM----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGV 289 ++ L E F+N + ++ K KA + K+ H + Sbjct: 184 IEYLTTYIETIRPQLLKKTVTEVLFLNMHGKPLSRQAIWKMIKQNGVKANIKKTLTPHTL 243 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 R AT + GA + G + + YT Sbjct: 244 RHSFATHLLENGADLRAVQEMLGHSDISTTQLYTH 278 >gi|170017033|ref|YP_001727952.1| site-specific recombinase XerD [Leuconostoc citreum KM20] gi|169803890|gb|ACA82508.1| Site-specific recombinase XerD [Leuconostoc citreum KM20] Length = 298 Score = 154 bits (389), Expect = 2e-35, Method: Composition-based stats. Identities = 53/286 (18%), Positives = 99/286 (34%), Gaps = 24/286 (8%) Query: 71 LKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR-----SGVE 124 ++ IS+Y L+ N+ S+ +Q HI + + Sbjct: 5 IEDAISDYIHYIRIERGLSENTITSYRQDLNQFGMYLSQEHLLLGEVDHIVVLSWLNRLR 64 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 + + SS I+ +TS+R F + ++ + NP V+ PK+ + E++ Sbjct: 65 TNGKSNSSVIRMVTSLRRFFGYLTQENMITHNPMSHVKPPKKAAHLPAVLSFEEIDTLLG 124 Query: 185 F----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPD 239 G + R E + +GLR S+ + L + I+T K + + + Sbjct: 125 VPVPSTPLGMRNRTLLEVMYATGLRVSELVNLKMSDLHIQLGLIQTLGKGDKERIIPIGE 184 Query: 240 GFMKLLAMTPIGK----------ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAH 287 + L G F+N+ ++ K +AG+ K S H Sbjct: 185 VAVDWLERYFAGARLTLLKAQESPYVFVNDRGGQLTRQGVWKIIKKLVLEAGITKDVSPH 244 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 +R AT + GA + G + + YT + RL Sbjct: 245 TLRHSFATHILENGADLRIVQELLGHADISTTQIYTH-ISKKRLSE 289 >gi|302389829|ref|YP_003825650.1| tyrosine recombinase XerD subunit [Thermosediminibacter oceani DSM 16646] gi|302200457|gb|ADL08027.1| tyrosine recombinase XerD subunit [Thermosediminibacter oceani DSM 16646] Length = 299 Score = 154 bits (389), Expect = 2e-35, Method: Composition-based stats. Identities = 53/276 (19%), Positives = 104/276 (37%), Gaps = 26/276 (9%) Query: 74 LISEYRK--SAHWGSLAVNSRISFESYFDQI-----IRKSGDFDYRKITTKHIRSGVESR 126 L+ ++ + S LA N+ S+ + D + TT + + Sbjct: 8 LLKQFLEFLSVE-KGLARNTIESYRRDLKSYLVFLRSQHIPDIKFTSKTTIISYLLLMQK 66 Query: 127 KHTPSS-AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 SS + +++ + + VR+ Y+ +P ++++ PK + + R T E++++ Sbjct: 67 SGKASSSISRACAAIKSFYHFLVRERYIQEDPTVNLDTPKLEKKLPRVLTVEEVERLLEQ 126 Query: 186 W----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG 240 G + + E L +G+R S+ V + ++ ++ K V + Sbjct: 127 PDTSNPLGFRDKTMLEVLYATGIRVSELISLTVDDVNLDMGFLRCLGKGSKERIVPIGSF 186 Query: 241 FMKLLAMTPI--------GKET--FFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHG 288 + L GK T F+N+ Q + F K A KAG+NK + H Sbjct: 187 AVNYLRQYINDVRKKILKGKSTNILFVNHMGQALTRQGFWKIIKKYARKAGINKVITPHT 246 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 +R AT + GA + G + + YT Sbjct: 247 LRHSFATHLIENGADLRAVQEMLGHADISTTQVYTH 282 >gi|221135227|ref|ZP_03561530.1| site-specific tyrosine recombinase XerD [Glaciecola sp. HTCC2999] Length = 303 Score = 154 bits (389), Expect = 2e-35, Method: Composition-based stats. Identities = 50/287 (17%), Positives = 106/287 (36%), Gaps = 32/287 (11%) Query: 85 GSLAVNSRISFESYFDQIIR----KSGDFDYRKITTKHIRSGVESRKH---TPSSAIQFL 137 L+ N+ ++++ Q+ R + F IT IR+ + R+ + S + L Sbjct: 24 KGLSDNTLSAYQTDLRQLCRFLTQQDAAFSLVDITDTDIRAYLSHRQANNVSARSTARAL 83 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPR 193 +S++ K+ + ++ +P ++ PK T+ ++ + + G + + Sbjct: 84 SSLKTFIKYCLSEKIRDDDPLRHIKPPKVAVSLPDSLTEAQVESLLAAPDTALAVGQRDK 143 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLL------- 245 E L +GLR ++ + + ++ K V L + ++ L Sbjct: 144 AMLEVLYATGLRVTELVGLRLDQMSLLQGVVRVIGKGNKERLVPLGEPAIEALTLFLQQG 203 Query: 246 --AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAG 301 + + F + +M F K A AG+ + S H +R AT + G Sbjct: 204 RHELLKHSSDVVFPSTRGTQMTRQTFWHRIKHYAMVAGIQVHLSPHTLRHAFATHLLNHG 263 Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348 A + G + + YT A S R++ +++S P Sbjct: 264 ADLRVVQLLLGHSDLSTTQIYTHVA---------SERLTHIIESHHP 301 >gi|332184671|gb|AEE26925.1| Tyrosine recombinase xerD [Francisella cf. novicida 3523] Length = 292 Score = 154 bits (388), Expect = 2e-35, Method: Composition-based stats. Identities = 44/265 (16%), Positives = 89/265 (33%), Gaps = 20/265 (7%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKI---TTKHIRSGVESRKHTPSSAIQFLTSMR 141 L+ N+ S+ + + D + S ++ S + ++++R Sbjct: 16 HGLSQNTISSYRTDLKLLENYFAKTDLISLDFEQLYAFISYRSKNGYSSRSNARMISTLR 75 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAFE 197 + W + NP + PK + + T+ D+++ G + + E Sbjct: 76 KFYAWLISTGQTNNNPTAKLTLPKLAKKLPKDMTETDVERLLHAPDMTEDVGIRDKAMLE 135 Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-IITVELPDGFMKLLAMTPIGKET-- 254 + +GLR S+ + + NI I+ G+ V + + ++ L Sbjct: 136 LMYATGLRVSELVGLNIDDIDINIGVIQVMGKGSKERIVPIGEYALEYLQKYFAEARMSL 195 Query: 255 --------FFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATA 304 FI+ +++ F K A AG+ + S H +R AT + GA Sbjct: 196 SKNFKEKAVFISKHTKRITRQSFWHRIKNYALIAGINTDISPHTLRHAFATHLLNHGADL 255 Query: 305 HELMATYGWKTVDQAETYTKGADRI 329 + G V YT + Sbjct: 256 RSVQLLLGHSNVSTTTIYTHISQNR 280 >gi|330504633|ref|YP_004381502.1| site-specific tyrosine recombinase XerD [Pseudomonas mendocina NK-01] gi|328918919|gb|AEB59750.1| site-specific tyrosine recombinase XerD [Pseudomonas mendocina NK-01] Length = 313 Score = 154 bits (388), Expect = 2e-35, Method: Composition-based stats. Identities = 53/289 (18%), Positives = 110/289 (38%), Gaps = 28/289 (9%) Query: 74 LISEYRKSAHW--GSLAVNSRISFES---YFDQIIRKSGDFDYRKITTKHIR---SGVES 125 LI + + A W L+ +++ ++ S +F+ + G + I I + Sbjct: 23 LIERFLE-AQWLEKGLSAHTQAAYRSDLEHFNAWLDARG-LALQHIGRDAILDHLAWRLE 80 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + + S +FL+ +R +++ +R+ ++ +P L VE P+ + ++ D++ Sbjct: 81 QGYQARSTARFLSGVRGFYRFLLREMLISEDPTLQVELPQIGRPLPKSLSEADVEALLQA 140 Query: 186 ----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG 240 G + R E L GLR S+ ++ + ++ K V L + Sbjct: 141 PDLDDPIGLRDRAMLEVLYACGLRVSELVGLTLEQVNLRQGVLRVFGKGSKERLVPLGEE 200 Query: 241 FMKLLAMTPIGKETFFI----------NNDKQKMNATQFSIWFKAKATKAGVNK--SAHG 288 + + + + ++M F K +A AG++K S H Sbjct: 201 AIAWIERYMREARPLLLGGKPSDVLFPSLRGEQMTRQTFWHRIKHQARVAGISKALSPHT 260 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 +R AT + GA + G + + YT A R RL +++ Sbjct: 261 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHIA-RARLQELHAQ 308 >gi|227431702|ref|ZP_03913732.1| site-specific recombinase XerD [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227352526|gb|EEJ42722.1| site-specific recombinase XerD [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 298 Score = 154 bits (388), Expect = 2e-35, Method: Composition-based stats. Identities = 55/286 (19%), Positives = 98/286 (34%), Gaps = 24/286 (8%) Query: 71 LKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR-----SGVE 124 + I +Y L+ N+ S+ Q HI + + Sbjct: 5 IDNAIVDYLHYIRIERGLSENTIKSYHQDLVQFGEYLNGEKLVLDQVDHIVILSWLNQLR 64 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 + SS I+ +T++R F + VR++ VA NP V PK+ + E++ + Sbjct: 65 DLGKSNSSVIRMVTTLRNFFGYLVREKVVAHNPMNDVRPPKKAEHLPAVLSIEEIDRLLQ 124 Query: 185 F----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPD 239 G + R E + +GLR S+ + L + I+T K + + + Sbjct: 125 APIEDTPLGLRNRTLIEVMYATGLRVSELVNLKMSDLHLQLGLIQTLGKGDKERIIPIGE 184 Query: 240 GFMKLLAM----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAH 287 + L F+N+ +++ K T AG+ K S H Sbjct: 185 IAIDWLTRYFNESRIVLLKDKESPYVFLNDRGNQISRQGIWKIIKKLVTTAGITKDVSPH 244 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 +R AT + GA + G + + YT + RL Sbjct: 245 TLRHSFATHILENGADLRIVQELLGHADISTTQIYTH-ISKKRLSE 289 >gi|157960633|ref|YP_001500667.1| tyrosine recombinase XerD [Shewanella pealeana ATCC 700345] gi|157845633|gb|ABV86132.1| tyrosine recombinase XerD [Shewanella pealeana ATCC 700345] Length = 300 Score = 154 bits (388), Expect = 2e-35, Method: Composition-based stats. Identities = 55/297 (18%), Positives = 114/297 (38%), Gaps = 25/297 (8%) Query: 63 SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFE---SYFDQIIRKSGDFDYR--KITTK 117 S + P ++ L + S L+ N+ ++ + D+ ++K GD + + Sbjct: 2 SEKYTPNSIIDLFLDDLWST--KGLSDNTLSAYRTDLRHLDRYLQKQGDDLVTCSQFDIR 59 Query: 118 HIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177 + + + +S+ + ++S+R + + + ++ + +P +E PK + ++E Sbjct: 60 NYLAERFDKGFAKTSSARMMSSLRRFYGYLIVKKQIDSDPMALIESPKLARKLPDSLSEE 119 Query: 178 DMQQFKSF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTI 232 D+ + + S+ + E L +GLR S+ ++ L ++ T K G Sbjct: 120 DIDRLLAEPEQDDPIESRDKAMLELLYATGLRVSELVGLTMEQLSLRQGLVRITGKGGKE 179 Query: 233 ITVELPD----------GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282 V L + F + + + F + Q+M F K A +AG+ Sbjct: 180 RLVPLGELAITEIESYLKFARAELLKGKQSDVLFPSKRAQQMTRQTFWHRIKLYALRAGI 239 Query: 283 --NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 S H +R AT + GA + G + + YT A RL +S Sbjct: 240 STELSPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVAT-ARLASLHSE 295 >gi|329730857|gb|EGG67235.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus 21193] Length = 295 Score = 154 bits (388), Expect = 2e-35, Method: Composition-based stats. Identities = 45/275 (16%), Positives = 99/275 (36%), Gaps = 24/275 (8%) Query: 74 LISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE------SR 126 +I EY + L+ N+ ++ + + I + +E + Sbjct: 4 IIEEYLRFIQIEKGLSSNTIGAYRRDLKKYQDYMTEHHISHIDFIDRQLILECLGHLIDQ 63 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + S +F++++R ++A+R++Y A +P + ++ PK + +++ Sbjct: 64 GQSAKSIARFISTIRSFHQFAIREKYAAKDPTVLLDSPKYDKKLPDVLNVDEVLALLETP 123 Query: 187 SE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGF 241 G + R E L +G+R S+ ++++ + ++ K V L D Sbjct: 124 DLNKINGYRDRTMLELLYATGMRVSELIHLELENVNLIMGFVRVFGKGDKERIVPLGDAV 183 Query: 242 MKLLAM----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGV 289 ++ L E F+N + ++ K KA + K+ H + Sbjct: 184 IEYLTTYIETIRPQLLKKTVTEVLFLNMHGKPLSRQAIWKMIKQNGVKANIKKTLTPHTL 243 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 R AT + GA + G + + YT Sbjct: 244 RHSFATHLLENGADLRAVQEMLGHSDISTTQLYTH 278 >gi|9622620|gb|AAF89876.1| putative site-specific recombinase XerD [Staphylococcus aureus] Length = 295 Score = 154 bits (388), Expect = 3e-35, Method: Composition-based stats. Identities = 45/275 (16%), Positives = 98/275 (35%), Gaps = 24/275 (8%) Query: 74 LISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE------SR 126 +I EY + L+ N+ ++ + + I + E + Sbjct: 4 IIEEYLRFIQIEKGLSSNTIGAYRRDLKKYQDYMTEHHISHIDFIDRQLIQECLGHLIDQ 63 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + S +F++++R ++A+R++Y A +P + ++ PK + +++ Sbjct: 64 GQSAKSIARFISTIRSFHQFAIREKYAAKDPTVLLDSPKYDKKLPDVLNVDEVLALLETP 123 Query: 187 SE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGF 241 G + R E L +G+R S+ ++++ + ++ K V L D Sbjct: 124 DLNKINGYRDRTMLELLYATGMRVSELIHLELENVNLIMGFVRVFGKGDKERIVPLGDAV 183 Query: 242 MKLLAM----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289 ++ L E F+N + ++ K KA + K + H + Sbjct: 184 IEYLTTYIETIRPQLLKKTVTEVLFLNMHGKPLSRQAIWKMIKQNGVKANIKKKLTPHTL 243 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 R AT + GA + G + + YT Sbjct: 244 RHSFATHLLENGADLRAVQEMLGHSDISTTQLYTH 278 >gi|282916763|ref|ZP_06324521.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus D139] gi|283770568|ref|ZP_06343460.1| tyrosine recombinase xerD [Staphylococcus aureus subsp. aureus H19] gi|282319250|gb|EFB49602.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus D139] gi|283460715|gb|EFC07805.1| tyrosine recombinase xerD [Staphylococcus aureus subsp. aureus H19] gi|302333169|gb|ADL23362.1| site-specific recombinase XerD [Staphylococcus aureus subsp. aureus JKD6159] Length = 295 Score = 154 bits (388), Expect = 3e-35, Method: Composition-based stats. Identities = 46/275 (16%), Positives = 98/275 (35%), Gaps = 24/275 (8%) Query: 74 LISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE------SR 126 +I EY + L+ N+ ++ + + I + E + Sbjct: 4 IIEEYLRFIQIEKGLSSNTIGAYRRDLKKYQDYMTEHHISHIDFIDRQLIQECLGHLIDQ 63 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + S +F++++R ++A+R++Y A +P + ++ PK + +++ Sbjct: 64 GQSAKSIARFISTIRSFHQFAIREKYAAKDPTVLLDSPKYDKKLPDVLNVDEVLALLETP 123 Query: 187 SE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGF 241 G + R E L +G+R S+ ++H+ + ++ K V L D Sbjct: 124 DLNKINGYRDRTMLELLYATGMRVSELIHLELEHVNLIMGFVRVFGKGDKERIVPLGDAV 183 Query: 242 MKLLAM----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGV 289 ++ L E F+N + ++ K KA + K+ H + Sbjct: 184 IEYLTTYIETIRPQLLKKTVTEVLFLNMHGKPLSRQAIWKMIKQNGVKANIKKTLTPHTL 243 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 R AT + GA + G + + YT Sbjct: 244 RHSFATHLLENGADLRAVQEMLGHSDISTTQLYTH 278 >gi|291615189|ref|YP_003525346.1| tyrosine recombinase XerD [Sideroxydans lithotrophicus ES-1] gi|291585301|gb|ADE12959.1| tyrosine recombinase XerD [Sideroxydans lithotrophicus ES-1] Length = 303 Score = 154 bits (388), Expect = 3e-35, Method: Composition-based stats. Identities = 51/275 (18%), Positives = 97/275 (35%), Gaps = 24/275 (8%) Query: 86 SLAVNSRISFESYFDQIIRKSGDFD---YRKITTKHIRSGVESR----KHTPSSAIQFLT 138 L+ N+ S+ ++ + T I+ + K +S + ++ Sbjct: 24 GLSRNTLESYRRDLNKFTEWLQKQRGCGLQAATHADIQGFLAHLVSGEKAKATSTSRAIS 83 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRL 194 S++ LF++ +RQ + +P L + PK + T+ED++ + G + R Sbjct: 84 SLKRLFRYLLRQNKITADPTLQIATPKLPRSLPKSLTEEDVELLLNAPDVDTPLGMRDRT 143 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-IITVELPDG--------FMKLL 245 E L SGLR S+ V + ++ + G+ V L + + Sbjct: 144 MLEVLYASGLRVSELVGLSVAQVSLDMGVTRVMGKGSKERLVPLGEEALDWVKRYLAEAR 203 Query: 246 AMTPIG--KETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAG 301 G + F+ + M F K A + G++K S H +R AT + G Sbjct: 204 PALLAGQVADALFVTQRGEGMTRQMFWYLIKKHAKEGGLHKPLSPHTLRHAFATHLLNHG 263 Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336 A + G + + YT A + Sbjct: 264 ADLRVVQMLLGHSDISTTQIYTHVARERLKALHAM 298 >gi|116618399|ref|YP_818770.1| tyrosine recombinase XerD subunit [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116097246|gb|ABJ62397.1| tyrosine recombinase XerD subunit [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 297 Score = 154 bits (388), Expect = 3e-35, Method: Composition-based stats. Identities = 55/286 (19%), Positives = 98/286 (34%), Gaps = 24/286 (8%) Query: 71 LKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR-----SGVE 124 + I +Y L+ N+ S+ Q HI + + Sbjct: 4 IDNAIVDYLHYIRIERGLSENTIKSYHQDLVQFGEYLNGEKLVLDQVDHIVILSWLNKLR 63 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 + SS I+ +T++R F + VR++ VA NP V PK+ + E++ + Sbjct: 64 DLGKSNSSVIRMVTTLRNFFGYLVREKVVAHNPMNDVRPPKKAEHLPAVLSIEEIDRLLQ 123 Query: 185 F----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPD 239 G + R E + +GLR S+ + L + I+T K + + + Sbjct: 124 APIEDTPLGLRNRTLLEVMYATGLRVSELVNLKMSDLHLQLGLIQTLGKGDKERIIPIGE 183 Query: 240 GFMKLLAM----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAH 287 + L F+N+ +++ K T AG+ K S H Sbjct: 184 IAIDWLTRYFNESRIVLLKDKESPYVFLNDRGNQISRQGIWKIIKKLVTTAGITKDVSPH 243 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 +R AT + GA + G + + YT + RL Sbjct: 244 TLRHSFATHILENGADLRIVQELLGHADISTTQIYTH-ISKKRLSE 288 >gi|295428073|ref|ZP_06820705.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus EMRSA16] gi|295128431|gb|EFG58065.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus EMRSA16] Length = 297 Score = 153 bits (387), Expect = 3e-35, Method: Composition-based stats. Identities = 45/275 (16%), Positives = 98/275 (35%), Gaps = 24/275 (8%) Query: 74 LISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE------SR 126 +I EY + L+ N+ ++ + + I + E + Sbjct: 6 IIEEYLRFIQIEKGLSSNTIGAYRRDLKKYQDYMTEHHISHIDFIDRQLIQECLGHLIDQ 65 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + S +F++++R ++A+R++Y A +P + ++ PK + +++ Sbjct: 66 GQSAKSIARFISTIRSFHQFAIREKYAAKDPTVLLDSPKYDKKLPDVLNVDEVLALLETP 125 Query: 187 SE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGF 241 G + R E L +G+R S+ ++++ + ++ K V L D Sbjct: 126 DLNKINGYRDRTMLELLYATGMRVSELIHLELENVNLIMGFVRVFGKGDKERIVPLGDAV 185 Query: 242 MKLLAM----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGV 289 ++ L E F+N + ++ K KA + K+ H + Sbjct: 186 IEYLTTYIETIRPQLLKKTVTEVLFLNMHGKPLSRQAIWKMIKQNGVKANIKKTLTPHTL 245 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 R AT + GA + G + + YT Sbjct: 246 RHSFATHLLENGADLRAVQEMLGHSDISTTQLYTH 280 >gi|254360931|ref|ZP_04977077.1| site-specific recombinase XerD [Mannheimia haemolytica PHL213] gi|261493842|ref|ZP_05990354.1| site-specific recombinase XerD [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261495108|ref|ZP_05991572.1| site-specific recombinase XerD [Mannheimia haemolytica serotype A2 str. OVINE] gi|153092410|gb|EDN73473.1| site-specific recombinase XerD [Mannheimia haemolytica PHL213] gi|261309178|gb|EEY10417.1| site-specific recombinase XerD [Mannheimia haemolytica serotype A2 str. OVINE] gi|261310444|gb|EEY11635.1| site-specific recombinase XerD [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 297 Score = 153 bits (387), Expect = 3e-35, Method: Composition-based stats. Identities = 47/284 (16%), Positives = 100/284 (35%), Gaps = 24/284 (8%) Query: 71 LKWLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGVES 125 L +I ++ + L+ N+ S+ S ++ + I + Sbjct: 4 LDPIIEQFLDTLWQEHGLSENTVASYRSDLERFSDYFSEPKAFLSLDHIDLQGFLGERLE 63 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----QQ 181 + + +S+ + L+ +R F++ + Y +P L++ PKR + +++ + Sbjct: 64 QGYKATSSARMLSCLRKFFRFLCLEHYRQDDPTLTLSSPKRGASLPKSLSEDQVMDLLDA 123 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG 240 + + + E L +GLR ++ + ++ ++ K V L + Sbjct: 124 PNTLDPIELRDKAMLELLYATGLRVTELVSLSMDNISLKQGVVRIIGKGDKERLVPLGEE 183 Query: 241 FMKLLAMTPIGKETFFINN----------DKQKMNATQFSIWFKAKATKAGVNK---SAH 287 + +NN Q+M F K A AG++ S H Sbjct: 184 ANYWIQEFFQYGRPILLNNQQSDVVFPSRRGQQMTRQTFWHRIKHYAVLAGIDADKLSPH 243 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 +R AT + GA + G + + YT+ A + RL Sbjct: 244 VLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTQVA-KARL 286 >gi|255026410|ref|ZP_05298396.1| hypothetical protein LmonocytFSL_08880 [Listeria monocytogenes FSL J2-003] Length = 290 Score = 153 bits (387), Expect = 3e-35, Method: Composition-based stats. Identities = 49/288 (17%), Positives = 104/288 (36%), Gaps = 33/288 (11%) Query: 73 WLISEYRKSAHW----GSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIRSGVE 124 LI ++ H+ L+ N+ ++E + D + I + Sbjct: 3 DLIEDFL---HFLIVERGLSANTIKAYERDLHYFVSYMDVTKELTDPNTLERSDIVGFMA 59 Query: 125 ---SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 +P S +++ S+R F + + ++ +P + +E PK+ + +D+++ Sbjct: 60 FARQEGKSPRSVARYIASLRSFFHYLMHDGKMSHDPMIQIETPKQAKGLPKVLNLDDVEK 119 Query: 182 FK----SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE 236 + G + + E L +GLR ++ + L ++ I+T K + Sbjct: 120 LLSSSDTSTPLGLRDQAMMEILYATGLRVTELVSLKMDDLHLHMGFIQTIGKGDKERIIP 179 Query: 237 L-----------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284 L + L + F+N+ Q + F K A ++G+ K Sbjct: 180 LGKTATTVLEKYLEEARPKLRRPKYRNDFVFLNHHGQGLTRQGFWKILKGIAKESGIEKP 239 Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 + H +R AT + GA + G + + YT ++RL Sbjct: 240 ITPHTLRHSFATHLLENGADLRSVQELLGHADISTTQIYTH-VTKLRL 286 >gi|160884146|ref|ZP_02065149.1| hypothetical protein BACOVA_02123 [Bacteroides ovatus ATCC 8483] gi|156110488|gb|EDO12233.1| hypothetical protein BACOVA_02123 [Bacteroides ovatus ATCC 8483] Length = 319 Score = 153 bits (387), Expect = 3e-35, Method: Composition-based stats. Identities = 55/275 (20%), Positives = 104/275 (37%), Gaps = 24/275 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQII-----RKSGDFDYRKITTKHIRSGVESRK 127 +I +Y++ SL+ N+ ++ + ++I K G D +H +G+ Sbjct: 16 IIRKYQQYLKLEKSLSPNTLDAYLTDLYKLINFLEQEKVGILDVCLSDLQHFAAGLHDIG 75 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 P S + L+ ++ F++ + ++Y+ +P +E PK + T E++ + S Sbjct: 76 IHPRSQARILSGIKSFFRFLIIEDYLEADPSELLEGPKIGFKLPEVLTVEEIDRIISAVD 135 Query: 188 ----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT-VELPDGFM 242 EG + R E L GLR S+ + L + IK + G+ V + + Sbjct: 136 RSKAEGQRNRAILETLYSCGLRVSELVTLKLSDLYFDEGFIKVEGKGSKQRLVPISPRAI 195 Query: 243 KLLAMTPIG-----------KETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289 + + F + ++ K A KAG+ K S H Sbjct: 196 NEIKLYIPDRNQIEVKKGHEDFVFVSQRRGKGLSRIMIFHMIKELAEKAGITKNISPHTF 255 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 R AT + GA + G +++ E YT Sbjct: 256 RHSFATHLLEGGANLRAIQCMLGHESIATTEIYTH 290 >gi|323439501|gb|EGA97222.1| site-specific recombinase [Staphylococcus aureus O11] gi|323441531|gb|EGA99182.1| site-specific recombinase [Staphylococcus aureus O46] Length = 295 Score = 153 bits (387), Expect = 3e-35, Method: Composition-based stats. Identities = 46/275 (16%), Positives = 98/275 (35%), Gaps = 24/275 (8%) Query: 74 LISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE------SR 126 +I EY + L+ N+ ++ + + I + E + Sbjct: 4 IIEEYLRFIQIEKGLSSNTIGAYRRDLKKYQDYMTEHHISHIDFIDRQLIQECLGHLIDQ 63 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + S +F++++R ++A+R++Y A +P + ++ PK + +++ Sbjct: 64 GQSAKSIARFISTIRSFHQFAIREKYAAKDPTVLLDSPKYDKKLPDVLNVDEVLALLETP 123 Query: 187 SE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGF 241 G + R E L +G+R S+ ++H+ + ++ K V L D Sbjct: 124 DLNKINGYRDRTMLELLYATGMRVSELIHLELEHVNLIMGFVRVFGKGDKERIVPLGDTV 183 Query: 242 MKLLAM----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGV 289 ++ L E F+N + ++ K KA + K+ H + Sbjct: 184 IEYLTTYIETIRPQLLKKTVTEVLFLNMHGKPLSRQAIWKMIKQNGVKANIKKTLTPHTL 243 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 R AT + GA + G + + YT Sbjct: 244 RHSFATHLLENGADLRAVQEMLGHSDISTTQLYTH 278 >gi|303241573|ref|ZP_07328073.1| tyrosine recombinase XerD [Acetivibrio cellulolyticus CD2] gi|302590891|gb|EFL60639.1| tyrosine recombinase XerD [Acetivibrio cellulolyticus CD2] Length = 294 Score = 153 bits (387), Expect = 3e-35, Method: Composition-based stats. Identities = 45/269 (16%), Positives = 103/269 (38%), Gaps = 23/269 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKI------TTKHIRSGVESRKHTPSSAIQFLT 138 L++N+ S+ +Q I + + I T ++ + S+ + L Sbjct: 16 KRLSLNTLQSYRRDIEQYITYLNEIKLQNISNTNKTTVITYLLHLQKKGRATSTISRNLA 75 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRL 194 S+R +++ + ++ +P +E PK + + + + ++++ +G + + Sbjct: 76 SIRSFYQYLTKNGVISGDPTEELESPKVEKKLPQILSTKEVELLLDQPKCDDLKGFRDKA 135 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE--------LPDGFMKL-- 244 E L +G+R S+ V + ++ IK K + L + K Sbjct: 136 MLELLYATGIRVSELICLNVLDINLDMGFIKCNKGTRERMIPIGSLSIQALNEYLAKSRN 195 Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302 L + ++ F+N + +++ F K A +NK + H +R A + GA Sbjct: 196 LLIQRSDEKALFVNVNGKRLTRQGFWKIIKQYKNLAKINKDITPHTLRHSFAAHLLENGA 255 Query: 303 TAHELMATYGWKTVDQAETYTKGA-DRIR 330 + G + + Y + A +RI+ Sbjct: 256 DLRSIQEMLGHSDISSTQVYAQIAKNRIK 284 >gi|282880564|ref|ZP_06289271.1| phage integrase domain protein [Prevotella timonensis CRIS 5C-B1] gi|281305667|gb|EFA97720.1| phage integrase domain protein [Prevotella timonensis CRIS 5C-B1] Length = 316 Score = 153 bits (387), Expect = 3e-35, Method: Composition-based stats. Identities = 43/276 (15%), Positives = 101/276 (36%), Gaps = 23/276 (8%) Query: 70 TLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIR---SGV 123 ++ ++ Y + + + ++ +++ ++ + + + K + + Sbjct: 7 SVANVVKAYTRYLKLERNYSPHTLDAYQHDLRWLLDYCENAGMHPKDMQLKDLELFAGQL 66 Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 P+S + L+ +R +++ V + +P +E P+ + E++ + Sbjct: 67 HEHHIGPTSQARILSGVRSFYRFLVLDGRIEQDPTELLESPRLGEHLPEVLSTEEVDMIE 126 Query: 184 SFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-IITVELP 238 + EG + + E L GLR S+ + +L ++ G+ V + Sbjct: 127 NSIDLSKPEGQRNKAIIEVLFSCGLRVSELVNLKLSNLYLEEGFVRVMGKGSKERLVPIS 186 Query: 239 DGF----------MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SA 286 L+ + ++ F+N + + T I K +A AG+ K S Sbjct: 187 SKAIRELQYWFVDRNLMKIQQGEEDYVFLNRRGKHLTRTMILIMLKRQAVAAGITKTISP 246 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 H +R AT GA + A G +++ E Y Sbjct: 247 HTLRHSFATELLKGGADLRAIQAMLGHESIGTTELY 282 >gi|51596111|ref|YP_070302.1| integrase [Yersinia pseudotuberculosis IP 32953] gi|51589393|emb|CAH21015.1| putative integrase [Yersinia pseudotuberculosis IP 32953] Length = 340 Score = 153 bits (387), Expect = 4e-35, Method: Composition-based stats. Identities = 68/336 (20%), Positives = 116/336 (34%), Gaps = 35/336 (10%) Query: 7 LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66 +PP R R GK Y FR GR IRL S A E + +K Sbjct: 13 MPP-----RVRKGKSAYEFRAIDGRTIRLCNFECSQ--ADVWVAF-------EKLMINQK 58 Query: 67 KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126 + +T LI+E+ S + LA ++ + Y +II G I +HIR ++ R Sbjct: 59 EDSTFTGLINEFLLSGDFCELASETQKDYHKYSSKIIAVFGKMSPDNIRPEHIRKYMDKR 118 Query: 127 KHTPS-SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 A + + M +F+W + V +NPC V++ K K R T E+ Sbjct: 119 GAKSRVQANREKSFMSRVFRWGYERGKVKLNPCQGVKQFKEKVR-TRYITDEEYTALYDT 177 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT---IITVELPDGFM 242 S ++A E R +D L + I+ KTG + + Sbjct: 178 AP--SVVKVAMELAYLCCTRQADILDMKKGQLLESGILIQQSKTGVAQIKAWIPRLHEVI 235 Query: 243 KLLAMTPIGKE----TFFINNDKQKMNATQFSIWFKAKATKAGVNK-------SAHGVRK 291 +L + P+ + + F+ + A + + H ++ Sbjct: 236 RLASTLPLNRGVVSIYLLHQQSGSRFTRDSFNAHWMKAKKAATMKYPELEFNFTFHDLKA 295 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 + + ++ A G K Q Y + + Sbjct: 296 KGISDLT---GSLYDKQAISGHKNASQTARYDRKIN 328 >gi|260583968|ref|ZP_05851716.1| tyrosine recombinase XerD [Granulicatella elegans ATCC 700633] gi|260158594|gb|EEW93662.1| tyrosine recombinase XerD [Granulicatella elegans ATCC 700633] Length = 297 Score = 153 bits (387), Expect = 4e-35, Method: Composition-based stats. Identities = 46/276 (16%), Positives = 97/276 (35%), Gaps = 24/276 (8%) Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI------RSGVESRKHTPS 131 + S L+ N+ +S++ + + + R ++ + S Sbjct: 8 FVDSLAIQGLSQNTVMSYQRDLMKFYQFLKEQQIRDWKEVDYSLIVLFLQDLKQDGYATS 67 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS---- 187 S + ++ ++ FK+ +++ V NP ++ PK+ + T +++ Q + Sbjct: 68 STSRMISCLKKFFKFLQQEQLVETNPVQPLKVPKKSKMLPKALTVDEVTQVLNSCDTSTV 127 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGF----- 241 G + + E L +G+R S+ + L + ++T K + + Sbjct: 128 LGLRDKAMLELLYATGMRVSELITLKLSDLHLELGFLQTIGKGNKQRIIPIGQAATNWVQ 187 Query: 242 ------MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFS 293 +L E F+N+ F K +AGV+K S H +R Sbjct: 188 HYLTYARVVLEQESNPVEYLFLNHRGNGFTRQGFWKNLKKIVQEAGVHKDVSPHTLRHSF 247 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 AT +AGA + G + + YT + Sbjct: 248 ATHILEAGADLRIVQELLGHSDISTTQIYTHLTNER 283 >gi|118498126|ref|YP_899176.1| site-specific recombinase [Francisella tularensis subsp. novicida U112] gi|194323353|ref|ZP_03057137.1| tyrosine recombinase XerD [Francisella tularensis subsp. novicida FTE] gi|254373477|ref|ZP_04988965.1| site specific recombinase XerD [Francisella tularensis subsp. novicida GA99-3549] gi|118424032|gb|ABK90422.1| site-specific recombinase [Francisella novicida U112] gi|151571203|gb|EDN36857.1| site specific recombinase XerD [Francisella novicida GA99-3549] gi|194322717|gb|EDX20197.1| tyrosine recombinase XerD [Francisella tularensis subsp. novicida FTE] Length = 292 Score = 153 bits (387), Expect = 4e-35, Method: Composition-based stats. Identities = 45/265 (16%), Positives = 90/265 (33%), Gaps = 20/265 (7%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKI---TTKHIRSGVESRKHTPSSAIQFLTSMR 141 L+ N+ S+ + + D + S ++ S + ++++R Sbjct: 16 HGLSQNTISSYRTDLKFLQNYFAKTDLISLDFEQLYAFISYRSKNGYSSRSNARMISTLR 75 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAFE 197 + W + NP + PK + + T+ D+++ G + + E Sbjct: 76 KFYAWLISTGQTNNNPTAKLTLPKLAKKLPKDMTETDVERLLQAPDMTEDVGIRDKAMLE 135 Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-IITVELPDGFMKLLAMTPIGKET-- 254 + +GLR S+ + + NI I+ G+ V + + ++ L T Sbjct: 136 LMYATGLRVSELVGLNIDDIDINIGVIQVMGKGSKERIVPIGEYALEYLQKYFAEARTSL 195 Query: 255 --------FFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATA 304 FI+ +++ F K A AG+ + S H +R AT + GA Sbjct: 196 SKNFKEKAVFISKHAKRITRQSFWHRIKNYALIAGINTDISPHTLRHAFATHLLNHGADL 255 Query: 305 HELMATYGWKTVDQAETYTKGADRI 329 + G V YT + Sbjct: 256 RSVQLLLGHSNVSTTTIYTHISQNR 280 >gi|326566125|gb|EGE16282.1| tyrosine recombinase XerD [Moraxella catarrhalis BC1] Length = 307 Score = 153 bits (386), Expect = 4e-35, Method: Composition-based stats. Identities = 53/274 (19%), Positives = 98/274 (35%), Gaps = 23/274 (8%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH---TP 130 +SE+R + L++ +R ++ ++ + D +R+ + K + Sbjct: 21 YLSEFRAAMLARGLSIATRNAYSQDV-RLCIRLSDMPVNLWQPSDVRNHLMCLKDAKKSE 79 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-- 188 S + L S+ F W + Y NPC S++ PK + +++++ Sbjct: 80 RSIARALASLCQFFLWQIESGYREDNPCESIKTPKLGKTLPKTLSEQEVSSLLDAPDISS 139 Query: 189 --GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKL 244 G + + E L GLR S+ ++HL S+ T K + + L + + Sbjct: 140 VRGLRDKAMLEVLYACGLRVSELTSLSLEHLNLTAGWLSV-TGKGNKMRLIPLGEYALSA 198 Query: 245 LA----------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKF 292 L + + F+ M F K A AG+N S H +R Sbjct: 199 LNEYLAVRGSLLIGKKDCQAVFLTEQGGYMTRHNFWHLIKKYALMAGINTAISPHTLRHA 258 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGA 326 AT + GA + G + + YT A Sbjct: 259 FATHLVNHGADLRSVQLLLGHSDLSTTQIYTHVA 292 >gi|253732140|ref|ZP_04866305.1| site-specific recombinase [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253724095|gb|EES92824.1| site-specific recombinase [Staphylococcus aureus subsp. aureus USA300_TCH959] Length = 295 Score = 153 bits (386), Expect = 4e-35, Method: Composition-based stats. Identities = 44/275 (16%), Positives = 97/275 (35%), Gaps = 24/275 (8%) Query: 74 LISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE------SR 126 +I EY + L+ N+ ++ + + I + E + Sbjct: 4 IIEEYLRFIQIEKGLSSNTIGAYRRDLKKYQDYMTEHHISHIDFIDRQLIQECLGHLIDQ 63 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + S +F++++R ++A+R++Y +P + ++ PK + +++ Sbjct: 64 GQSAKSIARFISTIRSFHQFAIREKYAVKDPTVLLDSPKYDKKLPDVLNVDEVLALLETP 123 Query: 187 SE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGF 241 G + R E L +G+R S+ ++++ + ++ K V L D Sbjct: 124 DLNKINGYRDRTMLELLYATGMRVSELIHLELENVNLIMGFVRVFGKGDKERIVPLGDAV 183 Query: 242 MKLLAM----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGV 289 ++ L E F+N + ++ K KA + K+ H + Sbjct: 184 IEYLTTYIETIRPQLLKKTVTEVLFLNMHGKPLSRQAIWKMIKQNGVKANIKKTLTPHTL 243 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 R AT + GA + G + + YT Sbjct: 244 RHSFATHLLENGADLRAVQEMLGHSDISTTQLYTH 278 >gi|320180132|gb|EFW55072.1| Putative integrase [Shigella boydii ATCC 9905] Length = 345 Score = 153 bits (386), Expect = 4e-35, Method: Composition-based stats. Identities = 61/330 (18%), Positives = 108/330 (32%), Gaps = 29/330 (8%) Query: 6 RLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65 +LPP V + Y K R ES + A L K E + R Sbjct: 12 KLPPNVYPNK------YSYVWKPTSR--------ESVTLTAIKDGLAALWKKYEETVNNR 57 Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125 + T L ++ SA++ L+ ++ + + +++ G I +HIR ++ Sbjct: 58 DRAMTFGRLWEKFLASAYYSDLSPRTQKDYLQHQKKLLAVFGKVPADSIKPEHIRRYMDK 117 Query: 126 RKH-TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 R + + A +SM ++ W + YV NPC V + K K T ++ Q S Sbjct: 118 RGEQSKTQANHEKSSMSRVYSWGYERGYVKANPCAGVSKFKAKNRERYV-TDKEYQAVLS 176 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244 +A E R SD + + N+ I+ KTG Sbjct: 177 VAPL--PVFIAMEIAYLCAARVSDVLSLKWEQIGNDGIFIQQGKTGKKQIKAWSPRLQAA 234 Query: 245 LAMTP--IGKETFFINNDKQKMNATQFSIWFKAKATKAG------VNKSAHGVRKFSATI 296 + N + F+ + +AG + + H + K Sbjct: 235 IEKAKQLPTSAYVISNQYGNRYMYKGFNEMWVEARNRAGKISGILTDFTFHDL-KAKGIS 293 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGA 326 + ++ + G KT Q Y + Sbjct: 294 DYE--GSSRDKQLFSGHKTEGQVLIYDRKV 321 >gi|242242770|ref|ZP_04797215.1| tyrosine recombinase XerD [Staphylococcus epidermidis W23144] gi|242233906|gb|EES36218.1| tyrosine recombinase XerD [Staphylococcus epidermidis W23144] Length = 295 Score = 153 bits (386), Expect = 4e-35, Method: Composition-based stats. Identities = 47/276 (17%), Positives = 98/276 (35%), Gaps = 24/276 (8%) Query: 73 WLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE------S 125 +I EY L+ N+ ++ + D I + E Sbjct: 3 NIIDEYLNFIQIEKGLSNNTIGAYRRDLKKYKDYLEDNKISHIDFIDRQIIQECLGHLID 62 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + S +F++++R ++A+R++Y A +P + +E PK + + +++ Sbjct: 63 MGQSSKSLARFISTIRSFHQFALREKYAAKDPTVLIETPKYEKKLPDVLEIDEVIALLET 122 Query: 186 WSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG 240 G + R E L +G+R ++ + V+ + + ++ K V L D Sbjct: 123 PDLAKNNGYRDRTMLELLYATGMRVTEIIQLDVEDVNLMMGFVRVFGKGNKERIVPLGDT 182 Query: 241 FMKLLAM----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHG 288 ++ L + F+N + ++ K KA +NK+ H Sbjct: 183 VIEYLTTYIETVRPQLLKQTTTQALFLNMHGKSLSRQGIWKIIKQYGLKANINKTLTPHT 242 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 +R AT + GA + G + + YT Sbjct: 243 LRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTH 278 >gi|258648906|ref|ZP_05736375.1| tyrosine recombinase XerD [Prevotella tannerae ATCC 51259] gi|260850938|gb|EEX70807.1| tyrosine recombinase XerD [Prevotella tannerae ATCC 51259] Length = 296 Score = 153 bits (386), Expect = 4e-35, Method: Composition-based stats. Identities = 45/268 (16%), Positives = 93/268 (34%), Gaps = 24/268 (8%) Query: 85 GSLAVNSRISFESYFDQIIRK-----SGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139 L+ N+R ++ +++I + + + S + L+ Sbjct: 15 QGLSDNTREAYMHDVEKLIDFLQQEGIDILNVKLDDLHRFTEALTDVGIMARSINRILSG 74 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRLA 195 +R + + + + Y+ +P +E PK + E++ + EG++ Sbjct: 75 VRSFYHFLLLEGYLEADPTQLLESPKVGAHLPTVLSIEEVDALLAVIDQSTKEGARDHAI 134 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-ELPDGFMKLLA-------- 246 E L GLR S+ C + L + I+ G + + +K L Sbjct: 135 IEILYSCGLRVSELCFLMLSDLYLDEGFIRIIGKGNKQRIVPISPRAVKELKNWLLIRHE 194 Query: 247 --MTPIGKETFFINN-DKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAG 301 + ++ F++ + ++ K A +AG+ K S H +R AT + G Sbjct: 195 INIKKGEEDYVFVSALRGKHLSRITVFHNLKVYAAEAGITKNISPHTLRHTFATHLLEGG 254 Query: 302 ATAHELMATYGWKTVDQAETYTKGADRI 329 A + G + + YT DR Sbjct: 255 ANLRAIQMMLGHTDLSTTQVYT-NIDRR 281 >gi|229524404|ref|ZP_04413809.1| tyrosine recombinase XerD [Vibrio cholerae bv. albensis VL426] gi|229337985|gb|EEO03002.1| tyrosine recombinase XerD [Vibrio cholerae bv. albensis VL426] Length = 302 Score = 153 bits (386), Expect = 4e-35, Method: Composition-based stats. Identities = 47/279 (16%), Positives = 108/279 (38%), Gaps = 24/279 (8%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITT-----KHIRSGVES 125 + L+ ++ + + LA N+ S+ + +++ YR + +S + Sbjct: 9 QGLVEQFLDTMWFERGLAENTVTSYRNDLSKLLEWMAQNQYRLDFISFAGLQEYQSWLSE 68 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + + P+S + L+++R LF++ R++ A +P + PK T + ++ ++ S Sbjct: 69 QNYKPTSKARMLSAIRRLFQYLYREKVRADDPSALLISPKLPTRLPKDLSEAQVEALLSA 128 Query: 186 W----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG 240 + + E L +GLR ++ ++++ ++ K G V + + Sbjct: 129 PDPQSPLELRDKAMLELLYATGLRVTELVSLTMENMSLRQGVVRVMGKGGKERLVPMGEN 188 Query: 241 FMKLLAMTPIGKETFFI----------NNDKQKMNATQFSIWFKAKATKAGVN---KSAH 287 ++ + + + ++ Q+M F K A AG++ S H Sbjct: 189 AIEWIETFLQQGRSLLLGEQTSDIVFPSSRGQQMTRQTFWHRIKHYAVIAGIDVEKLSPH 248 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 +R AT + GA + G + + YT A Sbjct: 249 VLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVA 287 >gi|254374937|ref|ZP_04990418.1| site specific recombinase XerD [Francisella novicida GA99-3548] gi|151572656|gb|EDN38310.1| site specific recombinase XerD [Francisella novicida GA99-3548] Length = 292 Score = 153 bits (386), Expect = 4e-35, Method: Composition-based stats. Identities = 44/265 (16%), Positives = 89/265 (33%), Gaps = 20/265 (7%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKI---TTKHIRSGVESRKHTPSSAIQFLTSMR 141 L+ N+ S+ + + D + S ++ S + ++++R Sbjct: 16 HGLSQNTISSYRTDLKFLQNYFAKTDLISLDFEQLYAFISYRSKNGYSSRSNARMISTLR 75 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAFE 197 + W + NP + PK + + T+ D+++ G + + E Sbjct: 76 KFYAWLISTGQTNNNPTAKLTLPKLAKKLPKDMTETDVERLLQAPDMTEDVGIRDKAMLE 135 Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-IITVELPDGFMKLLAMTPIGKET-- 254 + +GLR S+ + + NI I+ G+ V + + ++ L Sbjct: 136 LMYATGLRVSELVGLNIDDIDINIGVIQVMGKGSKERIVPIGEYALEYLQKYFAEARMSL 195 Query: 255 --------FFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATA 304 FI+ +++ F K A AG+ + S H +R AT + GA Sbjct: 196 SKNFKEKAVFISKHTKRITRQSFWHRIKNYALIAGINTDISPHTLRHAFATHLLNHGADL 255 Query: 305 HELMATYGWKTVDQAETYTKGADRI 329 + G V YT + Sbjct: 256 RSVQLLLGHSNVSTTTIYTHISQNR 280 >gi|15924487|ref|NP_372021.1| site-specific recombinase [Staphylococcus aureus subsp. aureus Mu50] gi|15927078|ref|NP_374611.1| site-specific recombinase [Staphylococcus aureus subsp. aureus N315] gi|21283180|ref|NP_646268.1| site-specific recombinase [Staphylococcus aureus subsp. aureus MW2] gi|49483747|ref|YP_040971.1| integrase/recombinase [Staphylococcus aureus subsp. aureus MRSA252] gi|49486335|ref|YP_043556.1| integrase/recombinase [Staphylococcus aureus subsp. aureus MSSA476] gi|57650453|ref|YP_186382.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus COL] gi|87160007|ref|YP_494143.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88195302|ref|YP_500106.1| integrase/recombinase XerD [Staphylococcus aureus subsp. aureus NCTC 8325] gi|148267981|ref|YP_001246924.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus JH9] gi|150394046|ref|YP_001316721.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus JH1] gi|151221617|ref|YP_001332439.1| integrase/recombinase XerD [Staphylococcus aureus subsp. aureus str. Newman] gi|156979816|ref|YP_001442075.1| site-specific recombinase [Staphylococcus aureus subsp. aureus Mu3] gi|161509725|ref|YP_001575384.1| integrase/recombinase XerD [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221140082|ref|ZP_03564575.1| integrase/recombinase XerD [Staphylococcus aureus subsp. aureus str. JKD6009] gi|253314865|ref|ZP_04838078.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|253733255|ref|ZP_04867420.1| site-specific recombinase [Staphylococcus aureus subsp. aureus TCH130] gi|255006283|ref|ZP_05144884.2| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257425620|ref|ZP_05602044.1| tyrosine recombinase xerD [Staphylococcus aureus subsp. aureus 55/2053] gi|257428281|ref|ZP_05604679.1| tyrosine recombinase xerD [Staphylococcus aureus subsp. aureus 65-1322] gi|257430918|ref|ZP_05607298.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus 68-397] gi|257433607|ref|ZP_05609965.1| tyrosine recombinase xerD [Staphylococcus aureus subsp. aureus E1410] gi|257436520|ref|ZP_05612564.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus M876] gi|257793574|ref|ZP_05642553.1| tyrosine recombinase XerD [Staphylococcus aureus A9781] gi|258411126|ref|ZP_05681406.1| tyrosine recombinase xerD [Staphylococcus aureus A9763] gi|258419910|ref|ZP_05682871.1| tyrosine recombinase XerD [Staphylococcus aureus A9719] gi|258423151|ref|ZP_05686044.1| tyrosine recombinase XerD [Staphylococcus aureus A9635] gi|258437328|ref|ZP_05689312.1| tyrosine recombinase xerD [Staphylococcus aureus A9299] gi|258443533|ref|ZP_05691872.1| tyrosine recombinase xerD [Staphylococcus aureus A8115] gi|258446740|ref|ZP_05694894.1| tyrosine recombinase xerD [Staphylococcus aureus A6300] gi|258448655|ref|ZP_05696767.1| tyrosine recombinase xerD [Staphylococcus aureus A6224] gi|258451155|ref|ZP_05699190.1| tyrosine recombinase xerD [Staphylococcus aureus A5948] gi|258454271|ref|ZP_05702241.1| tyrosine recombinase xerD [Staphylococcus aureus A5937] gi|262049084|ref|ZP_06021961.1| site-specific recombinase [Staphylococcus aureus D30] gi|262051169|ref|ZP_06023393.1| site-specific recombinase [Staphylococcus aureus 930918-3] gi|269203124|ref|YP_003282393.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus ED98] gi|282892996|ref|ZP_06301230.1| tyrosine recombinase XerD [Staphylococcus aureus A8117] gi|282904077|ref|ZP_06311965.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus C160] gi|282905904|ref|ZP_06313759.1| tyrosine recombinase xerD [Staphylococcus aureus subsp. aureus Btn1260] gi|282908814|ref|ZP_06316632.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus WW2703/97] gi|282911133|ref|ZP_06318935.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus WBG10049] gi|282914302|ref|ZP_06322088.1| integrase/recombinase XerD [Staphylococcus aureus subsp. aureus M899] gi|282919271|ref|ZP_06327006.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus C427] gi|282924596|ref|ZP_06332264.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus C101] gi|282924746|ref|ZP_06332413.1| tyrosine recombinase XerD [Staphylococcus aureus A9765] gi|282928967|ref|ZP_06336554.1| tyrosine recombinase XerD [Staphylococcus aureus A10102] gi|283958259|ref|ZP_06375710.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus A017934/97] gi|284024557|ref|ZP_06378955.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus 132] gi|293503379|ref|ZP_06667226.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus 58-424] gi|293510394|ref|ZP_06669100.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus M809] gi|293530933|ref|ZP_06671615.1| integrase/recombinase XerD [Staphylococcus aureus subsp. aureus M1015] gi|294848527|ref|ZP_06789273.1| tyrosine recombinase XerD [Staphylococcus aureus A9754] gi|295406617|ref|ZP_06816422.1| tyrosine recombinase XerD [Staphylococcus aureus A8819] gi|296276353|ref|ZP_06858860.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus MR1] gi|297207783|ref|ZP_06924218.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297245799|ref|ZP_06929664.1| tyrosine recombinase XerD [Staphylococcus aureus A8796] gi|297590959|ref|ZP_06949597.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus MN8] gi|300911864|ref|ZP_07129307.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus TCH70] gi|304380916|ref|ZP_07363576.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|60416269|sp|P0A0N9|XERD_STAAM RecName: Full=Tyrosine recombinase xerD gi|60416270|sp|P0A0P0|XERD_STAAN RecName: Full=Tyrosine recombinase xerD gi|60416271|sp|P0A0P1|XERD_STAAW RecName: Full=Tyrosine recombinase xerD gi|60416272|sp|P0A0P2|XERD_STAAU RecName: Full=Tyrosine recombinase xerD gi|81649271|sp|Q6G967|XERD_STAAS RecName: Full=Tyrosine recombinase xerD gi|81651036|sp|Q6GGK1|XERD_STAAR RecName: Full=Tyrosine recombinase xerD gi|81694449|sp|Q5HFS5|XERD_STAAC RecName: Full=Tyrosine recombinase xerD gi|3747042|gb|AAC64162.1| tyrosine recombinase XerD [Staphylococcus aureus] gi|13701296|dbj|BAB42590.1| site-specific recombinase [Staphylococcus aureus subsp. aureus N315] gi|14247268|dbj|BAB57659.1| site-specific recombinase [Staphylococcus aureus subsp. aureus Mu50] gi|21204620|dbj|BAB95316.1| site-specific recombinase [Staphylococcus aureus subsp. aureus MW2] gi|49241876|emb|CAG40569.1| integrase/recombinase [Staphylococcus aureus subsp. aureus MRSA252] gi|49244778|emb|CAG43214.1| integrase/recombinase [Staphylococcus aureus subsp. aureus MSSA476] gi|57284639|gb|AAW36733.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus COL] gi|87125981|gb|ABD20495.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87202860|gb|ABD30670.1| integrase/recombinase XerD [Staphylococcus aureus subsp. aureus NCTC 8325] gi|147741050|gb|ABQ49348.1| tyrosine recombinase XerD subunit [Staphylococcus aureus subsp. aureus JH9] gi|149946498|gb|ABR52434.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus JH1] gi|150374417|dbj|BAF67677.1| integrase/recombinase XerD [Staphylococcus aureus subsp. aureus str. Newman] gi|156721951|dbj|BAF78368.1| site-specific recombinase [Staphylococcus aureus subsp. aureus Mu3] gi|160368534|gb|ABX29505.1| integrase/recombinase XerD [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253728795|gb|EES97524.1| site-specific recombinase [Staphylococcus aureus subsp. aureus TCH130] gi|257271314|gb|EEV03460.1| tyrosine recombinase xerD [Staphylococcus aureus subsp. aureus 55/2053] gi|257275122|gb|EEV06609.1| tyrosine recombinase xerD [Staphylococcus aureus subsp. aureus 65-1322] gi|257278348|gb|EEV08984.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus 68-397] gi|257281700|gb|EEV11837.1| tyrosine recombinase xerD [Staphylococcus aureus subsp. aureus E1410] gi|257283871|gb|EEV13994.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus M876] gi|257787546|gb|EEV25886.1| tyrosine recombinase XerD [Staphylococcus aureus A9781] gi|257840276|gb|EEV64740.1| tyrosine recombinase xerD [Staphylococcus aureus A9763] gi|257844095|gb|EEV68483.1| tyrosine recombinase XerD [Staphylococcus aureus A9719] gi|257846601|gb|EEV70622.1| tyrosine recombinase XerD [Staphylococcus aureus A9635] gi|257848533|gb|EEV72521.1| tyrosine recombinase xerD [Staphylococcus aureus A9299] gi|257850939|gb|EEV74882.1| tyrosine recombinase xerD [Staphylococcus aureus A8115] gi|257854315|gb|EEV77264.1| tyrosine recombinase xerD [Staphylococcus aureus A6300] gi|257857933|gb|EEV80822.1| tyrosine recombinase xerD [Staphylococcus aureus A6224] gi|257861210|gb|EEV84023.1| tyrosine recombinase xerD [Staphylococcus aureus A5948] gi|257863550|gb|EEV86308.1| tyrosine recombinase xerD [Staphylococcus aureus A5937] gi|259160806|gb|EEW45826.1| site-specific recombinase [Staphylococcus aureus 930918-3] gi|259162753|gb|EEW47318.1| site-specific recombinase [Staphylococcus aureus D30] gi|262075414|gb|ACY11387.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus ED98] gi|269940989|emb|CBI49373.1| integrase/recombinase [Staphylococcus aureus subsp. aureus TW20] gi|282313431|gb|EFB43826.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus C101] gi|282317081|gb|EFB47455.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus C427] gi|282321483|gb|EFB51808.1| integrase/recombinase XerD [Staphylococcus aureus subsp. aureus M899] gi|282324828|gb|EFB55138.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus WBG10049] gi|282327078|gb|EFB57373.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus WW2703/97] gi|282331196|gb|EFB60710.1| tyrosine recombinase xerD [Staphylococcus aureus subsp. aureus Btn1260] gi|282589374|gb|EFB94465.1| tyrosine recombinase XerD [Staphylococcus aureus A10102] gi|282592753|gb|EFB97759.1| tyrosine recombinase XerD [Staphylococcus aureus A9765] gi|282595695|gb|EFC00659.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus C160] gi|282764314|gb|EFC04440.1| tyrosine recombinase XerD [Staphylococcus aureus A8117] gi|283470776|emb|CAQ49987.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus ST398] gi|283790408|gb|EFC29225.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus A017934/97] gi|285817178|gb|ADC37665.1| Site-specific recombinase XerD [Staphylococcus aureus 04-02981] gi|290920201|gb|EFD97267.1| integrase/recombinase XerD [Staphylococcus aureus subsp. aureus M1015] gi|291095045|gb|EFE25310.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus 58-424] gi|291466758|gb|EFF09278.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus M809] gi|294824553|gb|EFG40976.1| tyrosine recombinase XerD [Staphylococcus aureus A9754] gi|294968364|gb|EFG44388.1| tyrosine recombinase XerD [Staphylococcus aureus A8819] gi|296887800|gb|EFH26698.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297177450|gb|EFH36702.1| tyrosine recombinase XerD [Staphylococcus aureus A8796] gi|297575845|gb|EFH94561.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus MN8] gi|298694781|gb|ADI98003.1| site-specific recombinase [Staphylococcus aureus subsp. aureus ED133] gi|300886110|gb|EFK81312.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus TCH70] gi|302751329|gb|ADL65506.1| site-specific recombinase XerD [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304340643|gb|EFM06577.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|312438035|gb|ADQ77106.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus TCH60] gi|312829886|emb|CBX34728.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315129770|gb|EFT85760.1| integrase/recombinase XerD [Staphylococcus aureus subsp. aureus CGS03] gi|315195394|gb|EFU25781.1| integrase/recombinase XerD [Staphylococcus aureus subsp. aureus CGS00] gi|315198812|gb|EFU29140.1| integrase/recombinase XerD [Staphylococcus aureus subsp. aureus CGS01] gi|320140619|gb|EFW32473.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus MRSA131] gi|320144155|gb|EFW35924.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus MRSA177] gi|329314175|gb|AEB88588.1| Tyrosine recombinase xerD [Staphylococcus aureus subsp. aureus T0131] gi|329725291|gb|EGG61778.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus 21189] gi|329727344|gb|EGG63800.1| tyrosine recombinase XerD [Staphylococcus aureus subsp. aureus 21172] Length = 295 Score = 153 bits (386), Expect = 4e-35, Method: Composition-based stats. Identities = 45/275 (16%), Positives = 98/275 (35%), Gaps = 24/275 (8%) Query: 74 LISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE------SR 126 +I EY + L+ N+ ++ + + I + E + Sbjct: 4 IIEEYLRFIQIEKGLSSNTIGAYRRDLKKYQDYMTEHHISHIDFIDRQLIQECLGHLIDQ 63 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + S +F++++R ++A+R++Y A +P + ++ PK + +++ Sbjct: 64 GQSAKSIARFISTIRSFHQFAIREKYAAKDPTVLLDSPKYDKKLPDVLNVDEVLALLETP 123 Query: 187 SE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGF 241 G + R E L +G+R S+ ++++ + ++ K V L D Sbjct: 124 DLNKINGYRDRTMLELLYATGMRVSELIHLELENVNLIMGFVRVFGKGDKERIVPLGDAV 183 Query: 242 MKLLAM----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGV 289 ++ L E F+N + ++ K KA + K+ H + Sbjct: 184 IEYLTTYIETIRPQLLKKTVTEVLFLNMHGKPLSRQAIWKMIKQNGVKANIKKTLTPHTL 243 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 R AT + GA + G + + YT Sbjct: 244 RHSFATHLLENGADLRAVQEMLGHSDISTTQLYTH 278 >gi|323343537|ref|ZP_08083764.1| integrase/recombinase XerD [Prevotella oralis ATCC 33269] gi|323095356|gb|EFZ37930.1| integrase/recombinase XerD [Prevotella oralis ATCC 33269] Length = 317 Score = 153 bits (386), Expect = 4e-35, Method: Composition-based stats. Identities = 45/275 (16%), Positives = 95/275 (34%), Gaps = 23/275 (8%) Query: 73 WLISEYRKSAHW-GSLAVNSRISFESYFDQII-----RKSGDFDYRKITTKHIRSGVESR 126 ++ Y + + + ++ +++ +I + F+ + + + Sbjct: 12 DVVKSYVRYLKLERNYSPHTLEAYQHDLSWLIGYCAQQDLNVFELKLADLERFAVQIHEH 71 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 P++ + L+ +R +++ V Y+A +P +E P + ++ + Sbjct: 72 GVGPATQARILSGVRSFYRFLVLDGYIAADPTELLESPHIGEHLPEVLSAAEVDMLEDSI 131 Query: 187 S----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGF 241 EG + + E L GLR S+ + L ++ K V + Sbjct: 132 DLSKWEGQRNKAIIEMLFSCGLRVSELVNLKLSDLYIEEEYVRVLGKGDKERLVPISPKA 191 Query: 242 ----------MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289 L+ + P + F+N + T I K +A AG+ K S H + Sbjct: 192 IKELKLWFIDRNLMQIKPGEIDFVFLNRRGSHLTRTMILIMIKRQAEAAGIRKTISPHTL 251 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 R AT GA + G +++ E YT Sbjct: 252 RHSFATELLKGGADLRAIQEMLGHESIGTTEIYTH 286 >gi|89890506|ref|ZP_01202016.1| tyrosine recombinase XerD [Flavobacteria bacterium BBFL7] gi|89517421|gb|EAS20078.1| tyrosine recombinase XerD [Flavobacteria bacterium BBFL7] Length = 298 Score = 153 bits (386), Expect = 5e-35, Method: Composition-based stats. Identities = 53/287 (18%), Positives = 99/287 (34%), Gaps = 28/287 (9%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYF----DQIIRKSGDFDYRKITTKHIRSGVES 125 + +I ++ + SLA N+ ++ + ++ +I + +R + Sbjct: 3 WEHIIKDFLTYSRLERSLADNTLKAYSRDLHKLNNWLLANDISISPTEINSNILRDYIYE 62 Query: 126 RKHTP--SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 S + L+S++V F + + ++Y NP +E PK + + +++ Sbjct: 63 LAKNVSSRSQARALSSLKVFFNYLILEDYRKDNPLELIESPKIGRKLPDTLSTQEIDALI 122 Query: 184 SF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH--LQNNIFSIKTQKTGTIITVEL 237 + G + R E L GLR S+ + Q + T K + + Sbjct: 123 NSIDRSTPHGERNRAILETLYGCGLRVSELTTLKISDLFFQEGFIKV-TGKGDKQRFIPI 181 Query: 238 PD-----------GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-- 284 D L + P +T F+N + K KAG+ K Sbjct: 182 GDFTIKVINLYINEIRPHLPIKPQHTDTVFLNRRGAGLTRAMIFHIIKELKVKAGITKKI 241 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 S H R AT + GA + G +++ E Y DR L Sbjct: 242 SPHTFRHSFATHLLENGADLRSIQMMLGHESITTTEIYMH-VDRAHL 287 >gi|62258790|gb|AAX77820.1| unknown protein [synthetic construct] Length = 327 Score = 153 bits (386), Expect = 5e-35, Method: Composition-based stats. Identities = 48/284 (16%), Positives = 94/284 (33%), Gaps = 21/284 (7%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKI---TTKHIRSGVESRKHTPSSAIQFLTSMR 141 L+ N+ S+ + + D + S ++ S + ++++R Sbjct: 42 HGLSQNTISSYRTDLKFLQNYFAKTDLISLDFEQLYAFISYRSKNGYSSHSNARMISTLR 101 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAFE 197 + W + NP + PK + + T+ D+++ G + + E Sbjct: 102 KFYAWLISTGQTNNNPTAKLTLPKLAKKLPKDMTETDVERLLQAPDMTEDVGIRDKAMLE 161 Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-IITVELPDGFMKLLAMTPIGKE--- 253 + +GLR S+ + + NI I+ G+ V + + ++ L Sbjct: 162 LMYATGLRVSELVGLNIDDIDINIGVIQVMGKGSKERIVPIGEYALEYLQKYFAEARRSL 221 Query: 254 -------TFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATA 304 FI+ +++ F K A AG+ + S H +R AT + GA Sbjct: 222 SENFKEKAVFISKHAKRITRQSFWHRIKNYALIAGINTDISPHTLRHAFATHLLNHGADL 281 Query: 305 HELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348 + G V YT + RL + D P Sbjct: 282 RSVQLLLGHSNVSTTTIYTH-ISQNRLQEIYQKHHPRGYPYDVP 324 >gi|93004888|ref|YP_579325.1| tyrosine recombinase XerD [Psychrobacter cryohalolentis K5] gi|92392566|gb|ABE73841.1| Tyrosine recombinase XerD [Psychrobacter cryohalolentis K5] Length = 312 Score = 153 bits (386), Expect = 5e-35, Method: Composition-based stats. Identities = 51/276 (18%), Positives = 95/276 (34%), Gaps = 22/276 (7%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFD--QIIRKSGDFDYRKITTKHIRSGVESRKHTP 130 I+E+R++ LA +R ++ ++ + ++ H S + TP Sbjct: 22 AYITEFRQAMLARGLATRTRNAYVRDLRSCELTNHTALTRWQPEDVLHCLSILTQDGKTP 81 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS--- 187 + + L+S+R + W + NPC ++ PK + + D+ + Sbjct: 82 RTQARMLSSLRQFYLWMIASNLREDNPCERIKSPKLGRPLPKDLAEADVDNLLAAPDSST 141 Query: 188 -EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLL 245 G + + E L GLR S+ ++ + N ++ T K V L + L Sbjct: 142 ALGLRDKAMLEVLYACGLRVSELVNLSLEQVNLNSGWLQITGKGNKTRLVPLGEYAADAL 201 Query: 246 -------------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290 + + F+ M F K A A ++K S H +R Sbjct: 202 EDYLTHGRGDLIAHLKAGNCQAVFLTAQGGYMTRQNFWYLLKKYAKVASIDKDLSPHTLR 261 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 AT + GA + G + + YT A Sbjct: 262 HAFATHLLNHGADLRSVQLLLGHSDLSTTQIYTHVA 297 >gi|117620205|ref|YP_857765.1| tyrosine recombinase XerD [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117561612|gb|ABK38560.1| tyrosine recombinase XerD [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 299 Score = 153 bits (386), Expect = 5e-35, Method: Composition-based stats. Identities = 43/274 (15%), Positives = 97/274 (35%), Gaps = 22/274 (8%) Query: 85 GSLAVNSRISFESYFDQII----RKSGDFDYRKITT-KHIRSGVESRKHTPSSAIQFLTS 139 L+ N+ S+ + ++ + G + +H + ++ SS +FL++ Sbjct: 21 RGLSDNTVSSYRTDLEKFALWLDEQGGSLLLAGLDDIQHYLAWRVDQQFAASSTARFLSA 80 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195 +R +++ R++ + +P + +E PK + ++ +++ + + Sbjct: 81 LRRFYQYLNREKLRSDDPTVLLEGPKLPKKLPSDLSEAEVEALLQAPLVDEPLELRDKAM 140 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFMKLLAMTPIGKET 254 E L +GLR S+ +H+ ++ G V + + + L T Sbjct: 141 LELLYATGLRVSELVGLTAEHVSLRQGLVRVVGKGNKERLVPMGEEAVHWLERYYREART 200 Query: 255 FFI----------NNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGA 302 + + + M F K A +AG+ S H +R AT + GA Sbjct: 201 LLLGGTSSDVVFPSKQARMMTRQTFWHRIKLYAQRAGIQGELSPHTLRHAFATHLLNHGA 260 Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336 + G + + YT A+ + Sbjct: 261 DLRVVQMLLGHADLSTTQIYTHVANERLKALHGQ 294 >gi|57866964|ref|YP_188637.1| tyrosine recombinase XerD [Staphylococcus epidermidis RP62A] gi|293366542|ref|ZP_06613219.1| integrase/recombinase XerD [Staphylococcus epidermidis M23864:W2(grey)] gi|81674519|sp|Q5HP53|XERD_STAEQ RecName: Full=Tyrosine recombinase xerD gi|57637622|gb|AAW54410.1| tyrosine recombinase XerD [Staphylococcus epidermidis RP62A] gi|291319311|gb|EFE59680.1| integrase/recombinase XerD [Staphylococcus epidermidis M23864:W2(grey)] gi|329725406|gb|EGG61889.1| tyrosine recombinase XerD [Staphylococcus epidermidis VCU144] gi|329735284|gb|EGG71576.1| tyrosine recombinase XerD [Staphylococcus epidermidis VCU045] Length = 295 Score = 153 bits (386), Expect = 5e-35, Method: Composition-based stats. Identities = 47/275 (17%), Positives = 98/275 (35%), Gaps = 24/275 (8%) Query: 74 LISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE------SR 126 +I EY L+ N+ ++ + D I + E Sbjct: 4 IIEEYLNFIQIEKGLSNNTIGAYRRDLKKYKDYLEDNKISHIDFIDRQIIQECLGHLIDM 63 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + S +F++++R ++A+R++Y A +P + +E PK + + +++ Sbjct: 64 GQSSKSLARFISTIRSFHQFALREKYAAKDPTVLIETPKYEKKLPDVLEIDEVIALLETP 123 Query: 187 SE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGF 241 G + R E L +G+R ++ + V+ + + ++ K V L D Sbjct: 124 DLTKNNGYRDRTMLELLYATGMRVTEIIQLDVEDVNLMMGFVRVFGKGNKERIVPLGDTV 183 Query: 242 MKLLAM----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGV 289 ++ L + F+N + ++ K KA +NK+ H + Sbjct: 184 IEYLTTYIETVRPQLLKQTTTQALFLNMHGKSLSRQGIWKIIKQYGLKANINKTLTPHTL 243 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 R AT + GA + G + + YT Sbjct: 244 RHSFATHLLENGADLRAVQEMLGHSDISTTQLYTH 278 >gi|296114058|ref|YP_003627996.1| tyrosine recombinase XerD [Moraxella catarrhalis RH4] gi|295921752|gb|ADG62103.1| tyrosine recombinase XerD [Moraxella catarrhalis RH4] gi|326559455|gb|EGE09878.1| tyrosine recombinase XerD [Moraxella catarrhalis 7169] gi|326561283|gb|EGE11642.1| tyrosine recombinase XerD [Moraxella catarrhalis 46P47B1] gi|326565171|gb|EGE15362.1| tyrosine recombinase XerD [Moraxella catarrhalis 103P14B1] gi|326567828|gb|EGE17932.1| tyrosine recombinase XerD [Moraxella catarrhalis 12P80B1] gi|326568170|gb|EGE18252.1| tyrosine recombinase XerD [Moraxella catarrhalis BC8] gi|326572813|gb|EGE22798.1| tyrosine recombinase XerD [Moraxella catarrhalis CO72] gi|326573743|gb|EGE23701.1| tyrosine recombinase XerD [Moraxella catarrhalis O35E] gi|326574632|gb|EGE24568.1| tyrosine recombinase XerD [Moraxella catarrhalis 101P30B1] Length = 307 Score = 152 bits (385), Expect = 5e-35, Method: Composition-based stats. Identities = 53/274 (19%), Positives = 98/274 (35%), Gaps = 23/274 (8%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH---TP 130 +SE+R + L++ +R ++ ++ + D +R+ + K + Sbjct: 21 YLSEFRAAMLARGLSIATRNAYSQDV-RLCIRLSDTPVNLWQPSDVRNHLMCLKDAKKSE 79 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-- 188 S + L S+ F W + Y NPC S++ PK + +++++ Sbjct: 80 RSIARALASLCQFFLWQIESGYREDNPCESIKTPKLGKTLPKTLSEQEVSSLLDAPDISS 139 Query: 189 --GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKL 244 G + + E L GLR S+ ++HL S+ T K + + L + + Sbjct: 140 VRGLRDKAMLEVLYACGLRVSELTSLSLEHLNLTAGWLSV-TGKGNKMRLIPLGEYALSA 198 Query: 245 LA----------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKF 292 L + + F+ M F K A AG+N S H +R Sbjct: 199 LNEYLAVRGSLLIGKKDCQAVFLTEQGGYMTRHNFWHLIKKYALMAGINTAISPHTLRHA 258 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGA 326 AT + GA + G + + YT A Sbjct: 259 FATHLVNHGADLRSVQLLLGHSDLSTTQIYTHVA 292 >gi|261879004|ref|ZP_06005431.1| integrase/recombinase XerD [Prevotella bergensis DSM 17361] gi|270334388|gb|EFA45174.1| integrase/recombinase XerD [Prevotella bergensis DSM 17361] Length = 306 Score = 152 bits (385), Expect = 5e-35, Method: Composition-based stats. Identities = 49/262 (18%), Positives = 93/262 (35%), Gaps = 22/262 (8%) Query: 85 GSLAVNSRISFESYFDQIIR-----KSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139 S + N+ +++ ++++ FD + + + + S + L+ Sbjct: 21 RSYSPNTLDAYQRDLNKLLDFLRKVDVAPFDVKLEDLQQFAASLHEHGIGSKSQARILSG 80 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRLA 195 +R +++ V Y+ ++P +E P T +++ + EG + R Sbjct: 81 VRAFYRFLVLDGYLEVDPTELLESPHLPKHLPEYLTTDEVDMLQDSIDLSTNEGHRNRAI 140 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFMKLLA-------- 246 E L GLR S+ + L I+ G V + D ++ L Sbjct: 141 IEVLFSCGLRVSELTNLKLSDLFLEEQFIRVMGKGNKERLVPISDRAIEELGYWFDDRRQ 200 Query: 247 --MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302 + P ++ F+N + T I K +A AG+ K S H +R AT GA Sbjct: 201 MIIKPGEEDYVFLNRRGHHLTRTMILIMIKRQAEAAGIKKTISPHTLRHSFATALLRGGA 260 Query: 303 TAHELMATYGWKTVDQAETYTK 324 + G + E YT Sbjct: 261 DLRVIQDLLGHSNIGTTEMYTH 282 >gi|254448186|ref|ZP_05061649.1| tyrosine recombinase XerD [gamma proteobacterium HTCC5015] gi|198262312|gb|EDY86594.1| tyrosine recombinase XerD [gamma proteobacterium HTCC5015] Length = 311 Score = 152 bits (385), Expect = 5e-35, Method: Composition-based stats. Identities = 52/269 (19%), Positives = 96/269 (35%), Gaps = 24/269 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITT-----KHIRSGVESRKHTPSSAIQFLTS 139 L+ N+ S+ S Q+ GD + + + S++ SSA + L+S Sbjct: 31 HGLSDNTLGSYGSDLRQLSSFLGDKGSHLLQADRGALQDFLAFRLSKRGKASSAARLLSS 90 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK----SFWSEGSQPRLA 195 +R +++ V + + +P +E PK + ++E +++ + G + RL Sbjct: 91 LRRFYRYQVSEGRLQEDPTALLESPKLGVRLPKSISEEHIERLLRAPDTHTDLGLRDRLM 150 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDG------------FM 242 E L SGLR ++ ++ + + +K G V + D Sbjct: 151 LEMLYASGLRVTELVTLRLEQIDAHHGIVKVMGKGRKERLVPIGDEALAWLGEYLQSARP 210 Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA--GVNKSAHGVRKFSATISADA 300 LL F+ M K A +A G + S H +R AT + Sbjct: 211 DLLKGRDTTTPFLFVTRRGGGMTRQTAWNVIKKYAQQAHLGGDLSPHTLRHAFATHLLNH 270 Query: 301 GATAHELMATYGWKTVDQAETYTKGADRI 329 GA + G + + YT A+ Sbjct: 271 GADLRAVQMLLGHSDLSTTQIYTHVANER 299 >gi|16801135|ref|NP_471403.1| hypothetical protein lin2069 [Listeria innocua Clip11262] gi|34222947|sp|Q92A53|XERD_LISIN RecName: Full=Tyrosine recombinase xerD gi|16414570|emb|CAC97299.1| lin2069 [Listeria innocua Clip11262] gi|313618111|gb|EFR90213.1| tyrosine recombinase XerD [Listeria innocua FSL S4-378] gi|313623100|gb|EFR93374.1| tyrosine recombinase XerD [Listeria innocua FSL J1-023] Length = 297 Score = 152 bits (385), Expect = 5e-35, Method: Composition-based stats. Identities = 49/288 (17%), Positives = 104/288 (36%), Gaps = 33/288 (11%) Query: 73 WLISEYRKSAHW----GSLAVNSRISFES-------YFDQIIRKSGDFDYRKITTKHIRS 121 LI ++ H+ L+ N+ ++E Y D + + + Sbjct: 3 DLIDDFL---HFLIVEKGLSANTIKAYERDLHYFVSYMDTSRTLTDPDTLERNDIVGFMA 59 Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 +P S +++ S+R F + + ++ +P + +E PK+ + +D+++ Sbjct: 60 FARKEGKSPRSVARYIASLRSFFHYLMHDGKMSHDPMIQIETPKQAQSLPKVLNLDDVEK 119 Query: 182 FK----SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE 236 + G + + E L +GLR ++ + + L + I+T K + Sbjct: 120 LLSSSDTSTPLGLRDQAMLEILYATGLRVTELVKLKMDDLHLQMGFIQTIGKGDKERIIP 179 Query: 237 L-----------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284 L + L + F+N+ Q + F K A ++G+ K Sbjct: 180 LGKTATTVLEQYLEEARPKLRRPKYRNDFVFLNHHGQGLTRQGFWKILKGIAKESGIEKP 239 Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 + H +R AT + GA + G + + YT ++RL Sbjct: 240 ITPHTLRHSFATHLLENGADLRSVQELLGHADISTTQIYTH-VTKLRL 286 >gi|301063083|ref|ZP_07203644.1| tyrosine recombinase XerD [delta proteobacterium NaphS2] gi|300442803|gb|EFK07007.1| tyrosine recombinase XerD [delta proteobacterium NaphS2] Length = 293 Score = 152 bits (385), Expect = 5e-35, Method: Composition-based stats. Identities = 49/281 (17%), Positives = 99/281 (35%), Gaps = 23/281 (8%) Query: 73 WLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKIT--TKHIRSGVESRKH- 128 LI E+ LA N+ ++ + + + + + IR + + H Sbjct: 3 DLIDEFITYLRVERGLAENTVHAYSRDLIRFVAYLENRNITPVDCSRTAIRDYLGTLTHE 62 Query: 129 -TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK---- 183 + S + +++++ +++ V + + NP VE P+ + + + +++++ Sbjct: 63 LSKRSRARNVSAIKTFYRFLVSEGKMEENPARLVETPRIQQKLPDILSVDEVERLLLQPD 122 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFM 242 G + R E L +GLR S+ R + + +K K V + Sbjct: 123 GATPIGQRDRAMLELLYATGLRVSELVRLRLLDVNMEAGFVKALGKGSKERMVPFGEKAR 182 Query: 243 KLLAMTPIGK----------ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290 + L F+N + + F K AG+ K HG+R Sbjct: 183 QALKTYLSDGRPALLKEGHPPYLFLNFRGKPLTRQGFWKIIKNHGIMAGIKKNIKPHGLR 242 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 A+ +AGA + G + + YT R RL Sbjct: 243 HSFASHLLEAGADLRSVQLMLGHADITTTQIYTH-VTRERL 282 >gi|254284183|ref|ZP_04959151.1| tyrosine recombinase XerD [gamma proteobacterium NOR51-B] gi|219680386|gb|EED36735.1| tyrosine recombinase XerD [gamma proteobacterium NOR51-B] Length = 299 Score = 152 bits (385), Expect = 6e-35, Method: Composition-based stats. Identities = 46/276 (16%), Positives = 99/276 (35%), Gaps = 24/276 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH------IRSGVESRKHTPSSAIQFLT 138 L+ N+ ++ Q + + + H+ SA +FL+ Sbjct: 20 RGLSANTLAAYRRDLRQFADFLDERGIASLKAADAGALQGFLASRLKSGHSNRSAARFLS 79 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRL 194 ++R +++ +R+ + +P ++ P+ + ++ D+++ + + R Sbjct: 80 TLRGFYRYHLRENRIDRDPTQFIDSPRLGRSLPKSISEADVERLLAAPNVEDPIDFRDRT 139 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIG-- 251 E L GLR ++ V L N ++ K + + + + + G Sbjct: 140 MLELLYACGLRVTELTGLQVSQLSLNQGVVRVVGKGDKERLIPIGEEALSWVQQFLAGPR 199 Query: 252 --------KETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAG 301 E F +N +M F K A +AG+ + S H +R AT + G Sbjct: 200 QVLLKERMSEVLFPSNRGGQMTRQTFWYRIKLHAKRAGIEAHLSPHTLRHAFATHLINHG 259 Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 A + G + + YT A R R+ +++ Sbjct: 260 ADLRVVQMLLGHSDLTTTQIYTHVA-RHRMQQLHAQ 294 >gi|229822894|ref|ZP_04448964.1| hypothetical protein GCWU000282_00184 [Catonella morbi ATCC 51271] gi|229787707|gb|EEP23821.1| hypothetical protein GCWU000282_00184 [Catonella morbi ATCC 51271] Length = 302 Score = 152 bits (385), Expect = 6e-35, Method: Composition-based stats. Identities = 44/271 (16%), Positives = 90/271 (33%), Gaps = 26/271 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKHTPSSAI---QFLT 138 + + N+ S+ + G I +R+ + +A + L+ Sbjct: 20 MNRSANTIQSYGRDLAKFQAYLTEQGIDKVEAIDEVTVRAFLAKLSQDAYAASSTSRMLS 79 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRL 194 S++ F + ++ + NP V RPK+ + T +++ G + R Sbjct: 80 SLKQFFLFLRKEGILETNPMSLVHRPKQGRHLPKVLTASEIEALLQAPDTSSPHGLRDRA 139 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAM------ 247 FE + +GLR ++ + ++ L + I+T K V L D ++ L Sbjct: 140 IFELMYATGLRVTELVQLKLEDLHLELGFIQTLGKGDKERLVPLIDEAIEWLEAYLEQVR 199 Query: 248 -------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISA 298 + F+ + AG+ + S H +R AT Sbjct: 200 PSFLRLAGSASPQEVFLTERGKAFTRQGIWKNLNKYVALAGIKQTVSPHMLRHSFATHLL 259 Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRI 329 + GA + G + + YT + + Sbjct: 260 ENGADLRMVQELLGHADISTTQIYTHISTQR 290 >gi|27468099|ref|NP_764736.1| site-specific recombinase [Staphylococcus epidermidis ATCC 12228] gi|251810914|ref|ZP_04825387.1| integrase/recombinase XerD [Staphylococcus epidermidis BCM-HMP0060] gi|282876077|ref|ZP_06284944.1| tyrosine recombinase XerD [Staphylococcus epidermidis SK135] gi|34222791|sp|Q7ZAJ2|XERD_STAES RecName: Full=Tyrosine recombinase xerD gi|27315645|gb|AAO04780.1|AE016748_14 site-specific recombinase [Staphylococcus epidermidis ATCC 12228] gi|251805594|gb|EES58251.1| integrase/recombinase XerD [Staphylococcus epidermidis BCM-HMP0060] gi|281295102|gb|EFA87629.1| tyrosine recombinase XerD [Staphylococcus epidermidis SK135] gi|329737213|gb|EGG73467.1| tyrosine recombinase XerD [Staphylococcus epidermidis VCU028] Length = 295 Score = 152 bits (385), Expect = 6e-35, Method: Composition-based stats. Identities = 47/275 (17%), Positives = 98/275 (35%), Gaps = 24/275 (8%) Query: 74 LISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE------SR 126 +I EY L+ N+ ++ + D I + E Sbjct: 4 IIEEYLNFIQIEKGLSNNTIGAYRRDLKKYKDYLEDNKISHIDFIDRQIIQECLGHLIDM 63 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + S +F++++R ++A+R++Y A +P + +E PK + + +++ Sbjct: 64 GQSSKSLARFISTIRSFHQFALREKYAAKDPTVLIETPKYEKKLPDVLEIDEVIALLETP 123 Query: 187 SE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGF 241 G + R E L +G+R ++ + V+ + + ++ K V L D Sbjct: 124 DLTKNNGYRDRTMLELLYATGMRVTEIIQLDVEDVNLIMGFVRVFGKGNKERIVPLGDTV 183 Query: 242 MKLLAM----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGV 289 ++ L + F+N + ++ K KA +NK+ H + Sbjct: 184 IEYLTTYIETVRPQLLKQTTTQALFLNMHGKSLSRQGIWKIIKQYGLKANINKTLTPHTL 243 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 R AT + GA + G + + YT Sbjct: 244 RHSFATHLLENGADLRAVQEMLGHSDISTTQLYTH 278 >gi|315653500|ref|ZP_07906421.1| integrase/recombinase XerD [Lactobacillus iners ATCC 55195] gi|315489191|gb|EFU78832.1| integrase/recombinase XerD [Lactobacillus iners ATCC 55195] Length = 297 Score = 152 bits (385), Expect = 6e-35, Method: Composition-based stats. Identities = 46/274 (16%), Positives = 100/274 (36%), Gaps = 25/274 (9%) Query: 75 ISEYRKSAH-WGSLAVNSRISFESYFDQ---IIRKSG--DFDYRKITTKHIRSGVESRKH 128 + +Y + A L+ N+ +S+ + ++ G ++ + + + Sbjct: 6 LEDYLRFAQIERGLSNNTLLSYRQDLLEYFSFLKSLGITTWEVDALIIDSFLAQERDKGK 65 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF--- 185 +S + L+S+R ++W RQ + +P L ++ PK++ + ++ + + Sbjct: 66 AIASISRMLSSLRKFYQWLFRQNLIKQDPLLRIDSPKKEKRLPTALSTTEVTKLINMPDT 125 Query: 186 -WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMK 243 G + R E L +G+R S+ + + IK K + + + M Sbjct: 126 TTDLGIRDRAILETLYATGMRVSEVINLNEDSIHEELHLIKVFGKGSKQRLIPISNVAMS 185 Query: 244 LLAMTPIG------------KETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289 + I ++ F+N+ K+ K AG+NK + H + Sbjct: 186 WIKKYQITVRNKTLLESGKFEKAIFLNSRGGKITRQAVWQMIKRYCQLAGINKNVTPHTL 245 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYT 323 R AT + GA + G + + YT Sbjct: 246 RHTFATHLLENGADLRIVQEILGHSDISTTQIYT 279 >gi|289209264|ref|YP_003461330.1| tyrosine recombinase XerD [Thioalkalivibrio sp. K90mix] gi|288944895|gb|ADC72594.1| tyrosine recombinase XerD [Thioalkalivibrio sp. K90mix] Length = 301 Score = 152 bits (384), Expect = 6e-35, Method: Composition-based stats. Identities = 48/275 (17%), Positives = 89/275 (32%), Gaps = 24/275 (8%) Query: 86 SLAVNSRISFESYFDQIIRKSGDFDYRKITTK-----HIRSGVESRKHTPSSAIQFLTSM 140 L+ ++ ++ + + R S P S + L+S+ Sbjct: 23 GLSDHTLAAYRRDLEALARWLHGRGVALEAASSADLLAFVSARMQAGARPKSITRALSSI 82 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS----FWSEGSQPRLAF 196 R +++ V Q +P +E P+ ++ + + G + R Sbjct: 83 RRFYRYLVHQGEREDDPSAGIESPRAGRPLPDSLSETQVNALLAAPELHTEVGLRDRAML 142 Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLAMTPIGK--- 252 E + +GLR S+ + + ++ T K V L + LA Sbjct: 143 ELMYATGLRVSELVGLEQSEVNSRQGVVRITGKGDKERLVPLGEEAAHWLARYLREARGA 202 Query: 253 --------ETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGA 302 +T F+ + + F K A AG+ S H +R AT D GA Sbjct: 203 LMSGHPPVDTVFVTRRGRGLTRQAFWYRIKHYAQVAGIEVPLSPHTLRHAFATHLLDHGA 262 Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 + G ++ + YT A R RL ++ Sbjct: 263 DLRVVQMLLGHSSLSTTQIYTHVA-RARLQSLHAE 296 >gi|89257003|ref|YP_514365.1| integrase/recombinase [Francisella tularensis subsp. holarctica LVS] gi|115315363|ref|YP_764086.1| site specific recombinase XerD [Francisella tularensis subsp. holarctica OSU18] gi|156503203|ref|YP_001429268.1| tyrosine recombinase XerD/ phage integrase family protein [Francisella tularensis subsp. holarctica FTNF002-00] gi|167009383|ref|ZP_02274314.1| tyrosine recombinase XerD [Francisella tularensis subsp. holarctica FSC200] gi|254368256|ref|ZP_04984276.1| integrase/recombinase [Francisella tularensis subsp. holarctica 257] gi|254369853|ref|ZP_04985863.1| integrase/recombinase [Francisella tularensis subsp. holarctica FSC022] gi|290954477|ref|ZP_06559098.1| integrase/recombinase [Francisella tularensis subsp. holarctica URFT1] gi|295312082|ref|ZP_06802895.1| integrase/recombinase [Francisella tularensis subsp. holarctica URFT1] gi|89144834|emb|CAJ80173.1| Integrase/recombinase [Francisella tularensis subsp. holarctica LVS] gi|115130262|gb|ABI83449.1| site specific recombinase XerD [Francisella tularensis subsp. holarctica OSU18] gi|134254066|gb|EBA53160.1| integrase/recombinase [Francisella tularensis subsp. holarctica 257] gi|156253806|gb|ABU62312.1| tyrosine recombinase XerD/ phage integrase family protein [Francisella tularensis subsp. holarctica FTNF002-00] gi|157122812|gb|EDO66941.1| integrase/recombinase [Francisella tularensis subsp. holarctica FSC022] Length = 292 Score = 152 bits (384), Expect = 7e-35, Method: Composition-based stats. Identities = 45/265 (16%), Positives = 90/265 (33%), Gaps = 20/265 (7%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKI---TTKHIRSGVESRKHTPSSAIQFLTSMR 141 L+ N+ S+ + + D + S ++ S + ++++R Sbjct: 16 HGLSQNTISSYRTDLKFLQNYFAKTDLISLDFEQLYAFISYRSKNGYSSHSNARMISTLR 75 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAFE 197 + W + NP + PK + + T+ D+++ G + + E Sbjct: 76 KFYAWLISTGQTNNNPTAKLTLPKLAKKLPKDMTETDVERLLQAPDMTEDVGIRDKAMLE 135 Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-IITVELPDGFMKLLAMTPIGKET-- 254 + +GLR S+ + + NI I+ G+ V + + ++ L T Sbjct: 136 LMYATGLRVSELVGLNIDDININIGVIQVMGKGSKERIVPIGEYALEYLQKYFAEARTSL 195 Query: 255 --------FFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATA 304 FI+ +++ F K A AG+ + S H +R AT + GA Sbjct: 196 SKNFKEKAVFISKHAKRITRQSFWHRIKNYALIAGINTDISPHTLRHAFATHLLNHGADL 255 Query: 305 HELMATYGWKTVDQAETYTKGADRI 329 + G V YT + Sbjct: 256 RSVQLLLGHSNVSTTTIYTHISQNR 280 >gi|254831444|ref|ZP_05236099.1| hypothetical protein Lmon1_08823 [Listeria monocytogenes 10403S] gi|284802400|ref|YP_003414265.1| hypothetical protein LM5578_2156 [Listeria monocytogenes 08-5578] gi|284995542|ref|YP_003417310.1| hypothetical protein LM5923_2107 [Listeria monocytogenes 08-5923] gi|284057962|gb|ADB68903.1| hypothetical protein LM5578_2156 [Listeria monocytogenes 08-5578] gi|284061009|gb|ADB71948.1| hypothetical protein LM5923_2107 [Listeria monocytogenes 08-5923] Length = 297 Score = 152 bits (384), Expect = 7e-35, Method: Composition-based stats. Identities = 49/288 (17%), Positives = 104/288 (36%), Gaps = 33/288 (11%) Query: 73 WLISEYRKSAHW----GSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIRSGVE 124 LI ++ H+ L+ N+ ++E + D + I + Sbjct: 3 DLIEDFL---HFLIVERGLSANTIKAYERDLHYFVSYMDVTKELTDPNTLERSDIVGFMA 59 Query: 125 ---SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 +P S +++ S+R F + + ++ +P + +E PK+ + +D+++ Sbjct: 60 FARQEGKSPRSVARYIASLRSFFHYLMHDGKMSHDPMIQIETPKQAKGLPKVLNLDDVEK 119 Query: 182 FK----SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE 236 + G + + E L +GLR ++ + L ++ I+T K + Sbjct: 120 LLSSSDTSTPLGLRDQAMMEILYATGLRVTELVSLKMDDLHLHMGFIQTIGKGDKERIIP 179 Query: 237 L-----------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284 L + L + F+N+ Q + F K A ++G+ K Sbjct: 180 LGKTATTVLEKYLEEARPKLRRPKYRNDFVFLNHHGQGLTRQGFWKILKGIAKESGIEKP 239 Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 + H +R AT + GA + G + + YT ++RL Sbjct: 240 ITPHTLRHSFATHLLENGADLRSVQELLGHADISTTQIYTH-VTKLRL 286 >gi|289550729|ref|YP_003471633.1| Site-specific recombinase XerD [Staphylococcus lugdunensis HKU09-01] gi|289180261|gb|ADC87506.1| Site-specific recombinase XerD [Staphylococcus lugdunensis HKU09-01] Length = 295 Score = 152 bits (384), Expect = 7e-35, Method: Composition-based stats. Identities = 44/275 (16%), Positives = 99/275 (36%), Gaps = 24/275 (8%) Query: 74 LISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE------SR 126 +I EY K L+ N+ ++ D+ I ++ E + Sbjct: 4 IIEEYLKFIQIEKGLSPNTIGAYRRDLDKYKLYLETRHIEHIDFIDRQTIQECLGYLIDQ 63 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + S +F++++R ++A+R++Y A +P + +E PK + + +++ + Sbjct: 64 GSSAKSLARFISTIRSFHQFALREKYAAKDPTVLLETPKYEKKLPDVLEIDEVVRLLEAP 123 Query: 187 SE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGF 241 G + R E + +G+R S+ ++++ + ++ K + L D Sbjct: 124 DLSKKNGYRDRTILELMYATGMRVSELVHIEIENINVIMGFVRVFGKGDKERIIPLGDTV 183 Query: 242 MKLLAM----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGV 289 + L F+N + ++ K K+ + K+ H + Sbjct: 184 IDYLKTYMKEIRPQLLKSTVTNVLFLNMHGKPLSRQGIWKMIKQYGIKSNITKTLTPHTL 243 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 R AT + GA + G + + YT Sbjct: 244 RHSFATHLLENGADLRAVQEMLGHSDISTTQLYTH 278 >gi|153830656|ref|ZP_01983323.1| tyrosine recombinase XerD [Vibrio cholerae 623-39] gi|148873865|gb|EDL72000.1| tyrosine recombinase XerD [Vibrio cholerae 623-39] Length = 302 Score = 152 bits (384), Expect = 7e-35, Method: Composition-based stats. Identities = 47/279 (16%), Positives = 109/279 (39%), Gaps = 24/279 (8%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITT-----KHIRSGVES 125 + L+ ++ + + LA N+ +S+ + +++ YR + +S + Sbjct: 9 QGLVEQFLDTMWFERGLAENTVVSYRNDLSKLLEWMAQNQYRLDFISFAGLQEYQSWLSE 68 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + + P+S + L+++R LF++ R++ A +P + PK T + ++ ++ S Sbjct: 69 QNYKPTSKARMLSAIRRLFQYLHREKVRADDPSALLVSPKLPTRLPKDLSEAQVEALLSA 128 Query: 186 W----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG 240 + + E L +GLR ++ ++++ ++ K G V + + Sbjct: 129 PDPQSPLELRDKAMLELLYATGLRVTELVSLTMENMSLRQGVVRVMGKGGKERLVPMGEN 188 Query: 241 FMKLLAMTPIGKETFFI----------NNDKQKMNATQFSIWFKAKATKAGVN---KSAH 287 ++ + + + ++ Q+M F K A AG++ S H Sbjct: 189 AIEWIETFLQQGRSLLLGEQTSDIVFPSSRGQQMTRQTFWHRIKHYAVIAGIDVEKLSPH 248 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 +R AT + GA + G + + YT A Sbjct: 249 VLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVA 287 >gi|309807082|ref|ZP_07701061.1| tyrosine recombinase XerD [Lactobacillus iners LactinV 03V1-b] gi|309809309|ref|ZP_07703178.1| tyrosine recombinase XerD [Lactobacillus iners SPIN 2503V10-D] gi|325911997|ref|ZP_08174399.1| tyrosine recombinase XerD [Lactobacillus iners UPII 143-D] gi|325912838|ref|ZP_08175216.1| tyrosine recombinase XerD [Lactobacillus iners UPII 60-B] gi|329921320|ref|ZP_08277758.1| tyrosine recombinase XerD [Lactobacillus iners SPIN 1401G] gi|308166512|gb|EFO68712.1| tyrosine recombinase XerD [Lactobacillus iners LactinV 03V1-b] gi|308170422|gb|EFO72446.1| tyrosine recombinase XerD [Lactobacillus iners SPIN 2503V10-D] gi|325476182|gb|EGC79346.1| tyrosine recombinase XerD [Lactobacillus iners UPII 143-D] gi|325477831|gb|EGC80965.1| tyrosine recombinase XerD [Lactobacillus iners UPII 60-B] gi|328934612|gb|EGG31116.1| tyrosine recombinase XerD [Lactobacillus iners SPIN 1401G] Length = 296 Score = 152 bits (384), Expect = 7e-35, Method: Composition-based stats. Identities = 46/274 (16%), Positives = 100/274 (36%), Gaps = 25/274 (9%) Query: 75 ISEYRKSAH-WGSLAVNSRISFESYFDQ---IIRKSG--DFDYRKITTKHIRSGVESRKH 128 + +Y + A L+ N+ +S+ + ++ G ++ + + + Sbjct: 5 LEDYLRFAQIERGLSNNTLLSYRQDLLEYFSFLKSLGITTWEVDALIIDSFLAQERDKGK 64 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF--- 185 +S + L+S+R ++W RQ + +P L ++ PK++ + ++ + + Sbjct: 65 AIASISRMLSSLRKFYQWLFRQNLIKQDPLLRIDSPKKEKRLPTALSTTEVTKLINMPDT 124 Query: 186 -WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMK 243 G + R E L +G+R S+ + + IK K + + + M Sbjct: 125 TTDLGIRDRAILETLYATGMRVSEVINLNEDSIHEELHLIKVFGKGSKQRLIPISNVAMS 184 Query: 244 LLAMTPIG------------KETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289 + I ++ F+N+ K+ K AG+NK + H + Sbjct: 185 WIKKYQITVRNKTLLESGKFEKAIFLNSRGGKITRQAVWQMIKRYCQLAGINKNVTPHTL 244 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYT 323 R AT + GA + G + + YT Sbjct: 245 RHTFATHLLENGADLRIVQEILGHSDISTTQIYT 278 >gi|110805962|ref|YP_689482.1| putative integrase for prophage CP-933U [Shigella flexneri 5 str. 8401] gi|110615510|gb|ABF04177.1| putative integrase for prophage [Shigella flexneri 5 str. 8401] Length = 345 Score = 152 bits (384), Expect = 8e-35, Method: Composition-based stats. Identities = 61/330 (18%), Positives = 108/330 (32%), Gaps = 29/330 (8%) Query: 6 RLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65 +LPP V + Y K R ES + A L K E + R Sbjct: 12 KLPPNVYPNK------YSYVWKPTSR--------ESVTLTAIKDGLAALWKKYEETVNNR 57 Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125 + T L ++ SA++ L+ ++ + + +++ G I +HIR ++ Sbjct: 58 DRAMTFGRLWEKFLASAYYSDLSPRTQKDYLQHQKKLLAVFGKVPADSIKPEHIRRYMDK 117 Query: 126 RKH-TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 R + + A +SM ++ W + YV NPC V + K K T ++ Q S Sbjct: 118 RGEQSKTQANHEKSSMSRVYSWGYERGYVKANPCAGVSKFKAKNRERYV-TDKEYQAVLS 176 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244 +A E R SD + + N+ I+ KTG Sbjct: 177 VAPL--PVFIAMEIAYLCAARVSDVLSLKWEQIGNDGIFIQQGKTGKKQIKAWSPRLQAA 234 Query: 245 LAMTP--IGKETFFINNDKQKMNATQFSIWFKAKATKAG------VNKSAHGVRKFSATI 296 + N + F+ + +AG + + H + K Sbjct: 235 IEKAKQLPTSAYVISNQYGNRYMYKGFNEMWVEARNRAGKISGILTDFTFHDL-KAKGIS 293 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGA 326 + ++ + G KT Q Y + Sbjct: 294 DYE--GSSRDKQLFSGHKTEGQVLIYDRKV 321 >gi|15642416|ref|NP_232049.1| site-specific tyrosine recombinase XerD [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121587637|ref|ZP_01677401.1| tyrosine recombinase XerD [Vibrio cholerae 2740-80] gi|121728363|ref|ZP_01681392.1| tyrosine recombinase XerD [Vibrio cholerae V52] gi|147673043|ref|YP_001217919.1| site-specific tyrosine recombinase XerD [Vibrio cholerae O395] gi|153802800|ref|ZP_01957386.1| tyrosine recombinase XerD [Vibrio cholerae MZO-3] gi|153818418|ref|ZP_01971085.1| tyrosine recombinase XerD [Vibrio cholerae NCTC 8457] gi|153822226|ref|ZP_01974893.1| tyrosine recombinase XerD [Vibrio cholerae B33] gi|153826869|ref|ZP_01979536.1| tyrosine recombinase XerD [Vibrio cholerae MZO-2] gi|227082540|ref|YP_002811091.1| integrase/recombinase XerD [Vibrio cholerae M66-2] gi|229507521|ref|ZP_04397026.1| tyrosine recombinase XerD [Vibrio cholerae BX 330286] gi|229512283|ref|ZP_04401762.1| tyrosine recombinase XerD [Vibrio cholerae B33] gi|229514045|ref|ZP_04403507.1| tyrosine recombinase XerD [Vibrio cholerae TMA 21] gi|229519419|ref|ZP_04408862.1| tyrosine recombinase XerD [Vibrio cholerae RC9] gi|229521248|ref|ZP_04410668.1| tyrosine recombinase XerD [Vibrio cholerae TM 11079-80] gi|229528596|ref|ZP_04417986.1| tyrosine recombinase XerD [Vibrio cholerae 12129(1)] gi|229607027|ref|YP_002877675.1| site-specific tyrosine recombinase XerD [Vibrio cholerae MJ-1236] gi|254226633|ref|ZP_04920213.1| tyrosine recombinase XerD [Vibrio cholerae V51] gi|254291785|ref|ZP_04962570.1| tyrosine recombinase XerD [Vibrio cholerae AM-19226] gi|254849542|ref|ZP_05238892.1| tyrosine recombinase XerD [Vibrio cholerae MO10] gi|255746910|ref|ZP_05420855.1| site-specific recombinase XerD [Vibrio cholera CIRS 101] gi|262161547|ref|ZP_06030657.1| site-specific recombinase XerD [Vibrio cholerae INDRE 91/1] gi|262168398|ref|ZP_06036095.1| site-specific recombinase XerD [Vibrio cholerae RC27] gi|262190652|ref|ZP_06048886.1| site-specific recombinase XerD [Vibrio cholerae CT 5369-93] gi|297581043|ref|ZP_06942968.1| tyrosine recombinase xerD [Vibrio cholerae RC385] gi|298500223|ref|ZP_07010028.1| tyrosine recombinase XerD [Vibrio cholerae MAK 757] gi|34223076|sp|Q9KPE9|XERD_VIBCH RecName: Full=Tyrosine recombinase xerD gi|9656993|gb|AAF95562.1| integrase/recombinase XerD [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121548147|gb|EAX58220.1| tyrosine recombinase XerD [Vibrio cholerae 2740-80] gi|121629354|gb|EAX61785.1| tyrosine recombinase XerD [Vibrio cholerae V52] gi|124121665|gb|EAY40408.1| tyrosine recombinase XerD [Vibrio cholerae MZO-3] gi|125620852|gb|EAZ49206.1| tyrosine recombinase XerD [Vibrio cholerae V51] gi|126511051|gb|EAZ73645.1| tyrosine recombinase XerD [Vibrio cholerae NCTC 8457] gi|126520236|gb|EAZ77459.1| tyrosine recombinase XerD [Vibrio cholerae B33] gi|146314926|gb|ABQ19465.1| tyrosine recombinase XerD [Vibrio cholerae O395] gi|149739285|gb|EDM53541.1| tyrosine recombinase XerD [Vibrio cholerae MZO-2] gi|150422297|gb|EDN14259.1| tyrosine recombinase XerD [Vibrio cholerae AM-19226] gi|227010428|gb|ACP06640.1| integrase/recombinase XerD [Vibrio cholerae M66-2] gi|227014311|gb|ACP10521.1| integrase/recombinase XerD [Vibrio cholerae O395] gi|229332370|gb|EEN97856.1| tyrosine recombinase XerD [Vibrio cholerae 12129(1)] gi|229341780|gb|EEO06782.1| tyrosine recombinase XerD [Vibrio cholerae TM 11079-80] gi|229344108|gb|EEO09083.1| tyrosine recombinase XerD [Vibrio cholerae RC9] gi|229349226|gb|EEO14183.1| tyrosine recombinase XerD [Vibrio cholerae TMA 21] gi|229352248|gb|EEO17189.1| tyrosine recombinase XerD [Vibrio cholerae B33] gi|229355026|gb|EEO19947.1| tyrosine recombinase XerD [Vibrio cholerae BX 330286] gi|229369682|gb|ACQ60105.1| tyrosine recombinase XerD [Vibrio cholerae MJ-1236] gi|254845247|gb|EET23661.1| tyrosine recombinase XerD [Vibrio cholerae MO10] gi|255735312|gb|EET90712.1| site-specific recombinase XerD [Vibrio cholera CIRS 101] gi|262023290|gb|EEY41994.1| site-specific recombinase XerD [Vibrio cholerae RC27] gi|262028858|gb|EEY47512.1| site-specific recombinase XerD [Vibrio cholerae INDRE 91/1] gi|262033466|gb|EEY51970.1| site-specific recombinase XerD [Vibrio cholerae CT 5369-93] gi|297534869|gb|EFH73705.1| tyrosine recombinase xerD [Vibrio cholerae RC385] gi|297540916|gb|EFH76970.1| tyrosine recombinase XerD [Vibrio cholerae MAK 757] gi|327484912|gb|AEA79319.1| Tyrosine recombinase XerD [Vibrio cholerae LMA3894-4] Length = 302 Score = 152 bits (384), Expect = 8e-35, Method: Composition-based stats. Identities = 47/279 (16%), Positives = 108/279 (38%), Gaps = 24/279 (8%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITT-----KHIRSGVES 125 + L+ ++ + + LA N+ S+ + +++ YR + +S + Sbjct: 9 QGLVEQFLDTMWFERGLAENTVASYRNDLSKLLEWMAQNQYRLDFISFAGLQEYQSWLSE 68 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + + P+S + L+++R LF++ R++ A +P + PK T + ++ ++ S Sbjct: 69 QNYKPTSKARMLSAIRRLFQYLHREKVRADDPSALLVSPKLPTRLPKDLSEAQVEALLSA 128 Query: 186 W----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG 240 + + E L +GLR ++ ++++ ++ K G V + + Sbjct: 129 PDPQSPLELRDKAMLELLYATGLRVTELVSLTMENMSLRQGVVRVMGKGGKERLVPMGEN 188 Query: 241 FMKLLAMTPIGKETFFI----------NNDKQKMNATQFSIWFKAKATKAGVN---KSAH 287 ++ + + + ++ Q+M F K A AG++ S H Sbjct: 189 AIEWIETFLQQGRSLLLGEQTSDIVFPSSRGQQMTRQTFWHRIKHYAVIAGIDVEKLSPH 248 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 +R AT + GA + G + + YT A Sbjct: 249 VLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVA 287 >gi|330828608|ref|YP_004391560.1| Tyrosine recombinase XerD [Aeromonas veronii B565] gi|328803744|gb|AEB48943.1| Tyrosine recombinase XerD [Aeromonas veronii B565] Length = 303 Score = 152 bits (384), Expect = 8e-35, Method: Composition-based stats. Identities = 46/273 (16%), Positives = 97/273 (35%), Gaps = 22/273 (8%) Query: 85 GSLAVNSRISFESYFDQII----RKSGDFDYRKI-TTKHIRSGVESRKHTPSSAIQFLTS 139 L+ N+ S+ S ++ + + +H + + SS +FL++ Sbjct: 25 RGLSDNTVSSYRSDLEKFSLWLDEQGSSLLLAGMDEIQHYLAWRVDHQFAASSTARFLSA 84 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195 +R +++ R++ + +P + +E PK + ++ +++ S + + Sbjct: 85 LRRFYQYLNREKLRSDDPTVLLEGPKLPKKLPSDLSETEVEALLSAPLVDDPLELRDKAM 144 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFMKLLAMTPIGKET 254 E L +GLR S+ +H+ ++ G V + + M L T Sbjct: 145 LELLYATGLRVSELVGLTAEHVSLRQGLVRVVGKGNKERLVPMGEEAMHWLERYYREART 204 Query: 255 FFI----------NNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302 + + + M F K A +AG+N S H +R AT + GA Sbjct: 205 LLLGGTSSDVVFPSKQARMMTRQTFWHRIKLYALRAGINGELSPHTLRHAFATHLLNHGA 264 Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335 + G + + YT A+ + Sbjct: 265 DLRVVQMLLGHADLSTTQIYTHVANERLKALHG 297 >gi|73662564|ref|YP_301345.1| site-specific recombinase [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|82582339|sp|Q49XU5|XERD_STAS1 RecName: Full=Tyrosine recombinase xerD gi|72495079|dbj|BAE18400.1| site-specific recombinase [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 295 Score = 152 bits (384), Expect = 8e-35, Method: Composition-based stats. Identities = 50/277 (18%), Positives = 103/277 (37%), Gaps = 24/277 (8%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQI-----IRKSGDFDY-RKITTKHIRSGVE 124 +I EY K L+ N+ ++ + ++K D+ + + + + Sbjct: 2 DTIIEEYLKFIQLEKGLSSNTIGAYRRDLKKYNTFLELQKISHIDFIDRASIQQCLGYLH 61 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 + S +F++++R ++A+R++Y A +P + +E PK + ++ Sbjct: 62 DNGASAKSLARFISTIRSFHQFALREKYAAKDPTVLIETPKYDRKLPDVLEINEVLALLE 121 Query: 185 FWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPD 239 + G + R E L +G+R S+ + ++ + + +K K V L D Sbjct: 122 TPNLAKINGYRDRTMLELLYATGMRVSELIQIELEDVNLIMGFVKVFGKGNKERIVPLGD 181 Query: 240 GFMKLLAM----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AH 287 ++ L T F+N + ++ K A KA + KS H Sbjct: 182 TVIEYLKTYIETIRPQLLKKTVTNTLFLNMHGKPLSRQAIWKMIKQNAIKANITKSLTPH 241 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 +R AT + GA + G + + YT Sbjct: 242 TLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTH 278 >gi|208779461|ref|ZP_03246806.1| tyrosine recombinase XerD [Francisella novicida FTG] gi|208744422|gb|EDZ90721.1| tyrosine recombinase XerD [Francisella novicida FTG] Length = 292 Score = 152 bits (384), Expect = 8e-35, Method: Composition-based stats. Identities = 44/265 (16%), Positives = 89/265 (33%), Gaps = 20/265 (7%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKI---TTKHIRSGVESRKHTPSSAIQFLTSMR 141 L+ N+ S+ + + D + S ++ S + ++++R Sbjct: 16 HGLSQNTISSYRTDLKFLQNYFAKTDLISLDFEQLYAFISYRSKNGYSSRSNARMISTLR 75 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAFE 197 + W + NP + PK + + T+ D+++ G + + E Sbjct: 76 KFYAWLISTGQTNNNPTAKLTLPKLAKKLPKDMTETDVERLLQAPDMTEDVGIRDKAMLE 135 Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-IITVELPDGFMKLLAMTPIGKET-- 254 + +GLR S+ + + NI I+ G+ V + + ++ L Sbjct: 136 LMYATGLRVSELVGLNIDDIDINIGVIQVMGKGSKERIVPIGEYALEYLQKYFAEARMSL 195 Query: 255 --------FFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATA 304 FI+ +++ F K A AG+ + S H +R AT + GA Sbjct: 196 SKNFKEKAVFISKHAKRITRQSFWHRIKNYALIAGINTDISPHTLRHAFATHLLNHGADL 255 Query: 305 HELMATYGWKTVDQAETYTKGADRI 329 + G V YT + Sbjct: 256 RSVQLLLGHSNVSTTTIYTHISQNR 280 >gi|169350488|ref|ZP_02867426.1| hypothetical protein CLOSPI_01256 [Clostridium spiroforme DSM 1552] gi|169292808|gb|EDS74941.1| hypothetical protein CLOSPI_01256 [Clostridium spiroforme DSM 1552] Length = 302 Score = 152 bits (383), Expect = 8e-35, Method: Composition-based stats. Identities = 59/282 (20%), Positives = 106/282 (37%), Gaps = 23/282 (8%) Query: 71 LKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGVE- 124 LK I EY++ L+ N+ ++ +Q I +H+R ++ Sbjct: 3 LKDEIEEYKQYLIVEKGLSKNTINAYIKDLNQFESYLDHNFQITKINDIAKEHVRLYIKE 62 Query: 125 -SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 S+K + +S + L S+R+ F +A ++ + N + PK + +KE+MQ+ Sbjct: 63 LSKKISATSINRKLVSLRMFFTFATKETVIDTNIMSDFDLPKIDKKLPIVLSKEEMQELL 122 Query: 184 SFWSEG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELP 238 S+ R FE + +GLR S+ + L N+ +K K V L Sbjct: 123 DSIEINDHISSRNRCMFELMYATGLRVSELTNLTISSLNINMGYLKIIGKGDKERIVPLS 182 Query: 239 DGFMKLL---------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAH 287 + +L F NN K++ + I K + +NK S H Sbjct: 183 NMARNILNDYLKHYRNEFIKKDSPLLFFNNHGNKLSREECYIILKQIIERTTINKKISPH 242 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 +R AT + GA + G + YT +++ Sbjct: 243 TIRHSFATHLLENGADLRSIQELLGHSNISTTTIYTHISNQK 284 >gi|262370170|ref|ZP_06063497.1| tyrosine recombinase XerD [Acinetobacter johnsonii SH046] gi|262315209|gb|EEY96249.1| tyrosine recombinase XerD [Acinetobacter johnsonii SH046] Length = 305 Score = 152 bits (383), Expect = 9e-35, Method: Composition-based stats. Identities = 52/291 (17%), Positives = 105/291 (36%), Gaps = 19/291 (6%) Query: 57 KREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR--KSGDFDYRKI 114 K+ + +P + PT L +L ++ +++ ++R ++ S Q ++ Sbjct: 4 KKPRVPAPVQIPTQLSFL-HGFKDYLIAQTVSPHTRNAYLSDLLQCSECSHVSMPEWSSD 62 Query: 115 TTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174 + + + +P S + L+++R FK+ Q+ + NP + PK + Sbjct: 63 DVADVLLTLTKQGKSPRSIARCLSALRSFFKFLREQKLRSDNPVALHKTPKIGRALPKDL 122 Query: 175 TKEDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKT 229 +++D+ G + R FE L GLR S+ + + ++ T K Sbjct: 123 SEQDVDALIQAPDIETALGLRDRAMFEVLYACGLRVSELLNLRLDLINLKQGYLRITGKG 182 Query: 230 GTIITVELPDGFMKLL---------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA 280 V L ++ + + + F+ M+ F K A +A Sbjct: 183 NKERLVPLGQIAVEWVEKYLIESRPQLYKSATDYLFLTQHGGIMSRQNFWYAIKRYALQA 242 Query: 281 GV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 G+ S H +R AT + GA + G + + YT A Sbjct: 243 GIQAELSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQVR 293 >gi|117924957|ref|YP_865574.1| tyrosine recombinase XerD subunit [Magnetococcus sp. MC-1] gi|117608713|gb|ABK44168.1| tyrosine recombinase XerD subunit [Magnetococcus sp. MC-1] Length = 296 Score = 152 bits (383), Expect = 9e-35, Method: Composition-based stats. Identities = 52/282 (18%), Positives = 99/282 (35%), Gaps = 29/282 (10%) Query: 75 ISEYRKSAHWGS-------LAVNSRISFESYFDQIIRKSGDFDYRKITTKH-----IRSG 122 +S+YR + LA N+ I++ D + + + Sbjct: 1 MSDYRLMERFLDELLIEHGLAANTLIAYRRDLDALRSFCASRNLTLPEIQRQDVLEYIGE 60 Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 + + TPS+ + L++MR LF+ V + + +P V RPK + + ++ + + Sbjct: 61 LAQKSLTPSTVARKLSAMRRLFRHLVDKGIRSEDPTGGVYRPKPQRKLPNTLSEAETEAL 120 Query: 183 K----SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVEL 237 + G + E + +GLR S+ + L ++ K V + Sbjct: 121 LYAPDTSTELGMRDAAMLELMYATGLRVSELVTLTLDGLDEENGFVRVIGKGNKERIVPM 180 Query: 238 PDGFMKLLAMTPIGKET----------FFINNDKQKMNATQFSIWFKAKATKAGVNK--S 285 + +++ F++N M F K A +A + K S Sbjct: 181 GEAATEMVIRYRHSARQVLLKGGRCNDLFLSNRGAAMTRHNFWHIVKRYAYEANIMKPLS 240 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 HG+R AT + GA + G + E YT A+ Sbjct: 241 PHGIRHAFATHLLNHGADLRAVQMMLGHADISTTEIYTHVAN 282 >gi|317485554|ref|ZP_07944431.1| tyrosine recombinase XerD [Bilophila wadsworthia 3_1_6] gi|316923234|gb|EFV44443.1| tyrosine recombinase XerD [Bilophila wadsworthia 3_1_6] Length = 336 Score = 152 bits (383), Expect = 9e-35, Method: Composition-based stats. Identities = 56/303 (18%), Positives = 101/303 (33%), Gaps = 29/303 (9%) Query: 52 TGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF-- 109 G P R L LI+E L+ N+ ++ D + + Sbjct: 16 NGQRPDTPAGFPARLASRWLDGLIAE-------RGLSRNTVAAYRQDLDALQDFLDELET 68 Query: 110 DYRKITTKH---IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166 + ++ + + R + + ++S+R W V + +A NP ++ PK Sbjct: 69 PLSGLDDENITLFIAWLRKRGDATRTLARRISSLRSFLAWCVERGELASNPAALIDTPKL 128 Query: 167 KTEGIRPWTKEDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222 + T++++ + + G + R E L +G+R S+ L Sbjct: 129 PSLLPDVLTQDEIVRLLNAPDATSKLGLRDRAMLELLYAAGMRVSELIELQPIDLDLQRG 188 Query: 223 SIKT-QKTGTIITVELPDGFMKLLA---------MTPIGKETFFINNDKQKMNATQFSIW 272 ++ K V L D + +A TP+ F+N ++ Sbjct: 189 VVRIFGKGSKERLVPLHDAAVMRMAEYLKIVRPLFTPVEDR-VFLNRSGNGLSRQGVWKL 247 Query: 273 FKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 K A +AG+ K S H R AT + GA + G + E YT Sbjct: 248 VKRYALEAGIRKPISPHTFRHSFATHLLEGGADLRSVQILLGHADMSATELYTHVQSERL 307 Query: 331 LGI 333 L I Sbjct: 308 LQI 310 >gi|312872390|ref|ZP_07732460.1| tyrosine recombinase XerD [Lactobacillus iners LEAF 2062A-h1] gi|312873969|ref|ZP_07734005.1| tyrosine recombinase XerD [Lactobacillus iners LEAF 2052A-d] gi|312875440|ref|ZP_07735443.1| tyrosine recombinase XerD [Lactobacillus iners LEAF 2053A-b] gi|311088951|gb|EFQ47392.1| tyrosine recombinase XerD [Lactobacillus iners LEAF 2053A-b] gi|311090518|gb|EFQ48926.1| tyrosine recombinase XerD [Lactobacillus iners LEAF 2052A-d] gi|311092213|gb|EFQ50587.1| tyrosine recombinase XerD [Lactobacillus iners LEAF 2062A-h1] Length = 296 Score = 152 bits (383), Expect = 9e-35, Method: Composition-based stats. Identities = 46/274 (16%), Positives = 100/274 (36%), Gaps = 25/274 (9%) Query: 75 ISEYRKSAH-WGSLAVNSRISFESYFDQ---IIRKSG--DFDYRKITTKHIRSGVESRKH 128 + +Y + A L+ N+ +S+ + ++ G ++ + + + Sbjct: 5 LEDYLRFAQIERGLSNNTLLSYRQDLLEYFSFLKSLGITTWEVDALIIDSFLAQERDKGK 64 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF--- 185 +S + L+S+R ++W RQ + +P L ++ PK++ + ++ + + Sbjct: 65 AIASISRMLSSLRKFYQWLFRQNLIKQDPLLRIDSPKKEKRLPIALSTTEVTKLINMPDT 124 Query: 186 -WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMK 243 G + R E L +G+R S+ + + IK K + + + M Sbjct: 125 TTDLGIRDRAILETLYATGMRVSEVINLNEDSIHEELHLIKVFGKGSKQRLIPISNVAMS 184 Query: 244 LLAMTPIG------------KETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289 + I ++ F+N+ K+ K AG+NK + H + Sbjct: 185 WIKKYQITVRNKTLLESGKFEKAIFLNSRGGKITRQAVWQMIKRYCQLAGINKNVTPHTL 244 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYT 323 R AT + GA + G + + YT Sbjct: 245 RHTFATHLLENGADLRIVQEILGHSDISTTQIYT 278 >gi|46908189|ref|YP_014578.1| integrase/recombinase XerD [Listeria monocytogenes str. 4b F2365] gi|47093384|ref|ZP_00231151.1| integrase/recombinase XerD [Listeria monocytogenes str. 4b H7858] gi|226224560|ref|YP_002758667.1| integrase/recombinase [Listeria monocytogenes Clip81459] gi|254825549|ref|ZP_05230550.1| integrase/recombinase XerD [Listeria monocytogenes FSL J1-194] gi|254852857|ref|ZP_05242205.1| integrase/recombinase XerD [Listeria monocytogenes FSL R2-503] gi|254931873|ref|ZP_05265232.1| integrase/recombinase XerD [Listeria monocytogenes HPB2262] gi|254992940|ref|ZP_05275130.1| integrase/recombinase [Listeria monocytogenes FSL J2-064] gi|255520096|ref|ZP_05387333.1| integrase/recombinase [Listeria monocytogenes FSL J1-175] gi|300763733|ref|ZP_07073730.1| tyrosine recombinase XerD [Listeria monocytogenes FSL N1-017] gi|71153414|sp|Q71Y59|XERD_LISMF RecName: Full=Tyrosine recombinase xerD gi|46881459|gb|AAT04755.1| integrase/recombinase XerD [Listeria monocytogenes serotype 4b str. F2365] gi|47018255|gb|EAL09021.1| integrase/recombinase XerD [Listeria monocytogenes str. 4b H7858] gi|225877022|emb|CAS05731.1| Putative integrase/recombinase [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258606190|gb|EEW18798.1| integrase/recombinase XerD [Listeria monocytogenes FSL R2-503] gi|293583424|gb|EFF95456.1| integrase/recombinase XerD [Listeria monocytogenes HPB2262] gi|293594790|gb|EFG02551.1| integrase/recombinase XerD [Listeria monocytogenes FSL J1-194] gi|300515469|gb|EFK42519.1| tyrosine recombinase XerD [Listeria monocytogenes FSL N1-017] gi|328466303|gb|EGF37460.1| tyrosine recombinase xerD [Listeria monocytogenes 1816] gi|328472797|gb|EGF43646.1| tyrosine recombinase xerD [Listeria monocytogenes 220] Length = 297 Score = 152 bits (383), Expect = 1e-34, Method: Composition-based stats. Identities = 49/288 (17%), Positives = 104/288 (36%), Gaps = 33/288 (11%) Query: 73 WLISEYRKSAHW----GSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIRSGVE 124 LI ++ H+ L+ N+ ++E + G D + I + Sbjct: 3 DLIEDFL---HFLIVERGLSANTIKAYERDLRYFVSYMDVAKGLTDPNTLERSDIVGFMA 59 Query: 125 ---SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 + S +++ S+R F + + ++ +P + +E PK+ + +D+++ Sbjct: 60 FARQEGKSARSVARYIASLRSFFHYLMHDGKMSHDPMIQIETPKQAQGLPKVLNLDDVEK 119 Query: 182 FK----SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE 236 + G + + E L +GLR ++ + L ++ I+T K + Sbjct: 120 LLSSSDTSTPLGLRDQAMMEILYATGLRVTELVSLKMDDLHLHMGFIQTIGKGDKERIIP 179 Query: 237 L-----------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284 L + L + F+N+ Q + F K A ++G+ K Sbjct: 180 LGKTATTVLEKYLEEARPKLRRPKYRNDFVFLNHHGQGLTRQGFWKILKGIAKESGIEKP 239 Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 + H +R AT + GA + G + + YT ++RL Sbjct: 240 ITPHTLRHSFATHLLENGADLRSVQELLGHADISTTQIYTH-VTKLRL 286 >gi|16803994|ref|NP_465479.1| hypothetical protein lmo1955 [Listeria monocytogenes EGD-e] gi|47097098|ref|ZP_00234668.1| integrase/recombinase XerD [Listeria monocytogenes str. 1/2a F6854] gi|224498595|ref|ZP_03666944.1| hypothetical protein LmonF1_02414 [Listeria monocytogenes Finland 1988] gi|224501245|ref|ZP_03669552.1| hypothetical protein LmonFR_01770 [Listeria monocytogenes FSL R2-561] gi|254827160|ref|ZP_05231847.1| integrase/recombinase XerD [Listeria monocytogenes FSL N3-165] gi|254899348|ref|ZP_05259272.1| hypothetical protein LmonJ_06029 [Listeria monocytogenes J0161] gi|254912513|ref|ZP_05262525.1| tyrosine recombinase XerD [Listeria monocytogenes J2818] gi|254936840|ref|ZP_05268537.1| integrase/recombinase XerD [Listeria monocytogenes F6900] gi|255028942|ref|ZP_05300893.1| hypothetical protein LmonL_06711 [Listeria monocytogenes LO28] gi|34222939|sp|Q8Y5V0|XERD_LISMO RecName: Full=Tyrosine recombinase xerD gi|16411408|emb|CAD00033.1| lmo1955 [Listeria monocytogenes EGD-e] gi|47014543|gb|EAL05506.1| integrase/recombinase XerD [Listeria monocytogenes str. 1/2a F6854] gi|258599542|gb|EEW12867.1| integrase/recombinase XerD [Listeria monocytogenes FSL N3-165] gi|258609436|gb|EEW22044.1| integrase/recombinase XerD [Listeria monocytogenes F6900] gi|293590498|gb|EFF98832.1| tyrosine recombinase XerD [Listeria monocytogenes J2818] Length = 297 Score = 152 bits (383), Expect = 1e-34, Method: Composition-based stats. Identities = 49/288 (17%), Positives = 104/288 (36%), Gaps = 33/288 (11%) Query: 73 WLISEYRKSAHW----GSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIRSGVE 124 LI ++ H+ L+ N+ ++E + D + I + Sbjct: 3 DLIEDFL---HFLIVERGLSANTIKAYERDLHYFVSYMDVTKELTDPNTLERSDIVGFMA 59 Query: 125 ---SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 +P S +++ S+R F + + ++ +P + +E PK+ + +D+++ Sbjct: 60 FARQEGKSPRSVARYIASLRSFFHYLMHDGKMSHDPMIQIETPKQAQGLPKVLNLDDVEK 119 Query: 182 FK----SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE 236 + G + + E L +GLR ++ + L ++ I+T K + Sbjct: 120 LLSSSDTSTPLGLRDQAMMEILYATGLRVTELVSLKMDDLHLHMGFIQTIGKGDKERIIP 179 Query: 237 L-----------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284 L + L + F+N+ Q + F K A ++G+ K Sbjct: 180 LGKTATTVLEKYLEEARPKLRRPKYRNDFVFLNHHGQGLTRQGFWKILKGIAKESGIEKP 239 Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 + H +R AT + GA + G + + YT ++RL Sbjct: 240 ITPHTLRHSFATHLLENGADLRSVQELLGHADISTTQIYTH-VTKLRL 286 >gi|153214077|ref|ZP_01949211.1| tyrosine recombinase XerD [Vibrio cholerae 1587] gi|124115503|gb|EAY34323.1| tyrosine recombinase XerD [Vibrio cholerae 1587] Length = 302 Score = 152 bits (383), Expect = 1e-34, Method: Composition-based stats. Identities = 47/279 (16%), Positives = 108/279 (38%), Gaps = 24/279 (8%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITT-----KHIRSGVES 125 + L+ ++ + + LA N+ S+ + +++ YR + +S + Sbjct: 9 QGLVEQFLDTMWFERGLAENTVASYRNDLSKLLEWMAQNQYRLDFISFAGLQEYQSWLSE 68 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + + P+S + L+++R LF++ R++ A +P + PK T + ++ ++ S Sbjct: 69 QNYKPTSKARMLSAIRRLFQYLHREKVRADDPSALLVSPKLPTRLPKDLSEAQVEALLSA 128 Query: 186 W----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG 240 + + E L +GLR ++ ++++ ++ K G V + + Sbjct: 129 PDPQSPLELRDKAMLELLYATGLRVTELVSLTMENMSLRQGVVRVMGKGGKERLVPMGEN 188 Query: 241 FMKLLAMTPIGKETFFI----------NNDKQKMNATQFSIWFKAKATKAGVN---KSAH 287 ++ + + + ++ Q+M F K A AG++ S H Sbjct: 189 AIEWIETFLQQGRSLLLGEQTSDIVFPSSRGQQMTRQTFWHRIKHYAAIAGIDVEKLSPH 248 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 +R AT + GA + G + + YT A Sbjct: 249 VLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVA 287 >gi|187940137|gb|ACD39269.1| phage integrase family protein [Pseudomonas aeruginosa] Length = 324 Score = 151 bits (382), Expect = 1e-34, Method: Composition-based stats. Identities = 59/329 (17%), Positives = 117/329 (35%), Gaps = 36/329 (10%) Query: 13 KERTRH--------GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP 64 +++ RH G Y+ R G + Y +AL + + Sbjct: 4 RKKDRHLPMCMFQRGPSFYFVRDGKW----------TNLGRDYRAALL----EYAKLTGG 49 Query: 65 RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124 K + LI + N+ + + +++ +F R++ KH+ Sbjct: 50 ASKDGMID-LIDRVMDHIA-PYRSANTITQYRAVAERLKDMFAEFQPREVLPKHVAQVKT 107 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 TP+ A + LT +RV+F A+ V NPC+ ++ K G R +++ Sbjct: 108 HMASTPNMANRTLTVLRVVFAQALEWGEVDSNPCIGIKPHSEKKRG-RYLNDKELLSILD 166 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244 SE R FE +G R D + + ++ + + QKTG+ + + + + Sbjct: 167 NCSE--YMRCIFELAYLTGQRIGDVLSIKLDDVSDDGIAFQQQKTGSKVLISMTPDLDAV 224 Query: 245 LAMT-----PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISA 298 + P + N ++++ +K AGV + H +R + T + Sbjct: 225 VQRAKALPRPADAKNLICNRKGKQVDYATTRDAWKRAREAAGVTDARIHDLRAKALTDAK 284 Query: 299 DAGATAHELMATYGWKTVDQAETYTKGAD 327 G A +L G + Y + + Sbjct: 285 KQGKDARKL---GGHTDPRMTDRYIRQRE 310 >gi|332035836|gb|EGI72320.1| site-specific recombinase XerD [Pseudoalteromonas haloplanktis ANT/505] Length = 308 Score = 151 bits (382), Expect = 1e-34, Method: Composition-based stats. Identities = 42/270 (15%), Positives = 93/270 (34%), Gaps = 19/270 (7%) Query: 85 GSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMR 141 ++ N+ ++ S D+ + + + + P S + +++++ Sbjct: 33 QGVSENTLSAYRSDLDKFCLFLKGENLMTVTGLDIESYLAHRVDLGLKPRSTARSISALK 92 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAFE 197 +++ VR++ ++ +P L++ +PK + ++ +++ + + G + + E Sbjct: 93 RFYQYFVREKIISDSPMLNIAQPKAGQSLPKTLSEAEVEALLNAPNTEEAMGLRDKAMLE 152 Query: 198 FLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET-- 254 L +GLR S+ ++ + K V L + M L G Sbjct: 153 LLYATGLRVSELVGLRMEQINLRQAVVFVKGKGNKERLVPLGEEAMYWLEQFLKGGRAQM 212 Query: 255 -------FFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAH 305 F + M F K A A V S H +R AT + GA Sbjct: 213 IKHATDFVFPSKRGVGMTRQTFWHRIKHYAILASVESPLSPHTMRHAFATHLLNHGADLR 272 Query: 306 ELMATYGWKTVDQAETYTKGADRIRLGIKN 335 + G + + YT A+ + Sbjct: 273 VVQMMLGHSDLSTTQIYTHVANERLKSVHA 302 >gi|53802409|ref|YP_112927.1| tyrosine recombinase XerD [Methylococcus capsulatus str. Bath] gi|53756170|gb|AAU90461.1| tyrosine recombinase XerD [Methylococcus capsulatus str. Bath] Length = 309 Score = 151 bits (382), Expect = 1e-34, Method: Composition-based stats. Identities = 45/267 (16%), Positives = 89/267 (33%), Gaps = 23/267 (8%) Query: 86 SLAVNSRISFESYFDQII------RKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139 L+ ++ ++ S R + + SRK ++ + L+S Sbjct: 31 GLSPHTLKAYGSDLRLFAAWLATNRCAELTALTGEDIEAYLGWRHSRKSKSRTSARVLSS 90 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195 +R + +R+ + +PC + PK T+ +++ + G + R Sbjct: 91 IRHFCAYRLRRGEITGDPCALIAPPKLGRFLPDTLTESEVEALLAAPDVDTPLGFRDRAM 150 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLAM------- 247 E L +GLR S+ + ++ + K V + + + L Sbjct: 151 LEMLYATGLRVSELVGLSFGQISLRQGVVRISGKGDKDRLVPVGEEALDWLERYLDKVRP 210 Query: 248 ---TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302 + F+ + M F K A +AG++K S H +R AT + GA Sbjct: 211 VTLKGRQSDFLFVTDRGGAMTRQAFWHLIKRYAGQAGISKPLSPHTLRHAFATHLLNHGA 270 Query: 303 TAHELMATYGWKTVDQAETYTKGADRI 329 + G + + YT A Sbjct: 271 DLRVVQMLLGHSDLSTTQIYTHVAQER 297 >gi|292491052|ref|YP_003526491.1| tyrosine recombinase XerD [Nitrosococcus halophilus Nc4] gi|291579647|gb|ADE14104.1| tyrosine recombinase XerD [Nitrosococcus halophilus Nc4] Length = 306 Score = 151 bits (382), Expect = 1e-34, Method: Composition-based stats. Identities = 57/285 (20%), Positives = 99/285 (34%), Gaps = 25/285 (8%) Query: 77 EYRKSAHWGS--LAVNSRISFESYFDQIIRKSGDFDYRKITTKH-----IRSGVESRKHT 129 EY A W LA N+ ++ + R + + + R H Sbjct: 18 EYFLDALWLEEGLAENTLAAYRRDLEGFSRWLYPQGRTLVEAQREDLLAYLAHRLERSHK 77 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---- 185 SA + ++S+R +++ VR++ +P VE P+ ++E+++ + Sbjct: 78 ARSAARSVSSLRRFYRYLVREKVRDSDPSDRVEAPRLGRPLPESLSEEEVEALLAAPEVN 137 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFMKL 244 + G + R E L +GLR S+ + L ++ G V L + + Sbjct: 138 CNLGLRDRAMLETLYATGLRVSELVHLTLPQLNLRQGVVRLSGKGNKERLVPLGEVALSW 197 Query: 245 LAMTPIGKET----------FFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKF 292 L F+ M F K A +AGV K S H +R Sbjct: 198 LECYSREARPGLIKAQMSEILFLTRRGGAMTRQAFWYLIKRYARQAGVRKALSPHTLRHA 257 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 AT + GA + G + + YT A R RL + + Sbjct: 258 FATHLLNHGADLRVVQMLLGHADLSTTQIYTHVA-RARLQQLHQQ 301 >gi|270295321|ref|ZP_06201522.1| tyrosine recombinase XerD [Bacteroides sp. D20] gi|270274568|gb|EFA20429.1| tyrosine recombinase XerD [Bacteroides sp. D20] Length = 317 Score = 151 bits (382), Expect = 1e-34, Method: Composition-based stats. Identities = 62/298 (20%), Positives = 116/298 (38%), Gaps = 27/298 (9%) Query: 58 REYINSPRKKPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQII-----RKSGDFDY 111 + S K+ TL +I +Y + +L+ N+ ++++ +++ D Sbjct: 2 KSEEKSTNKEKQTL--IIRKYHQYLKLEKALSPNTVDAYQTDLQKLLHFLEGEGIAILDT 59 Query: 112 RKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171 +H SG+ P S + L+ ++ F + V +Y+ +P +E PK + Sbjct: 60 TLDDLQHFASGLHDIGIHPRSQARILSGIKSFFHFLVIADYLEGDPSELLEGPKIGFKLP 119 Query: 172 RPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ 227 T E++ + S G+ + R E L GLR S+ C + L + IK + Sbjct: 120 EVLTVEEIDRIISAIDLGTNEGQRNRAILETLYSCGLRVSELCNLKISDLYFDEGFIKVE 179 Query: 228 KTGTIIT-VELPDGFMKLLAMTPIGK-----------ETFFINNDKQKMNATQFSIWFKA 275 G+ V + +K + + + + F+ + ++ K Sbjct: 180 GKGSKQRLVPISSRAIKEIRNWFVDRNGGWKIKKDFEDYVFLARWGKNISRIMVFHLIKE 239 Query: 276 KATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 A KAG+ K S H R AT + GA + + G +++ E YT DR RL Sbjct: 240 LAEKAGITKNISPHTFRHSFATHLLEGGANLRAIQSMLGHESIATTEIYTH-IDRHRL 296 >gi|220935295|ref|YP_002514194.1| tyrosine recombinase XerD [Thioalkalivibrio sp. HL-EbGR7] gi|219996605|gb|ACL73207.1| tyrosine recombinase XerD [Thioalkalivibrio sp. HL-EbGR7] Length = 308 Score = 151 bits (382), Expect = 1e-34, Method: Composition-based stats. Identities = 56/301 (18%), Positives = 102/301 (33%), Gaps = 29/301 (9%) Query: 62 NSPRKKPTTLKWLISEYRKSAHW--GSLAVNSRISFESYFDQIIRKSGD--FDYRKITTK 117 P+TL I + A W L+ ++ ++ + + R G + Sbjct: 7 GPDTAPPSTLA--IDAFL-DAIWAEHGLSDHTLAAYRADLMALARWLGPRGKRVEQADRG 63 Query: 118 HIRSGVESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174 + + + R P S + L+S+R ++ VR +P ++ PK Sbjct: 64 DLLAYLSHRVAGGARPRSTARLLSSLRRFYRHQVRDGRRQDDPTAQIDSPKLGRPLPDTL 123 Query: 175 TKEDMQQFKSF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKT 229 ++ D++ + G + R E L +GLR S+ V + ++T K Sbjct: 124 SETDVEALLASPDTDTDLGLRDRAMLELLYATGLRVSELVGLRVDQVNLRHGVVRTLGKG 183 Query: 230 GTIITVELPDGF-----------MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKAT 278 V L + L + F+ M F + A Sbjct: 184 SKERLVPLGEEASVWVERYLGAARPALLAGQGACDDLFVTRRGGAMTRQAFWHLLRRYAA 243 Query: 279 KAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336 +AG++K S H +R AT + GA + G + + YT A R RL + Sbjct: 244 QAGIHKHLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-RARLKELHG 302 Query: 337 R 337 + Sbjct: 303 K 303 >gi|282859943|ref|ZP_06269031.1| tyrosine recombinase XerD [Prevotella bivia JCVIHMP010] gi|282587346|gb|EFB92563.1| tyrosine recombinase XerD [Prevotella bivia JCVIHMP010] Length = 310 Score = 151 bits (382), Expect = 1e-34, Method: Composition-based stats. Identities = 48/259 (18%), Positives = 94/259 (36%), Gaps = 22/259 (8%) Query: 88 AVNSRISFESYFDQII-----RKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRV 142 + N+ ++ +++ K D + +H + + S + L+ +R Sbjct: 26 SENTVDAYMHDIEKLSSYLKAEKVDVLDVKLDDLEHFAASISEIGIGARSLARILSGVRH 85 Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRLAFEF 198 +++ V Y+ +P +E PK+ + ++ EG + + E Sbjct: 86 FYRFLVLDGYLEADPTELLESPKQPQHLPEVLSTAEVDIILQSIDLSKWEGQRNKAIIEM 145 Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-IITVELPDGFMKLLAMTPIGK----- 252 L GLR S+ + +L + I+ G+ V + ++ L + + Sbjct: 146 LFSCGLRVSELTNLKLSNLYLDDLYIRVMGKGSKERLVPISPRAVEELNYWFLDRNQMVI 205 Query: 253 -----ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAH 305 + F+N + T I K A AG+ K S H +R AT + GA Sbjct: 206 KEGEEDYVFLNRRGAHLTRTMILIMLKRYAKGAGIKKTISPHTLRHSFATALLEGGADLR 265 Query: 306 ELMATYGWKTVDQAETYTK 324 + A G ++V E YT Sbjct: 266 SIQAMLGHESVVTTEIYTH 284 >gi|315658225|ref|ZP_07911097.1| tyrosine recombinase XerD [Staphylococcus lugdunensis M23590] gi|315496554|gb|EFU84877.1| tyrosine recombinase XerD [Staphylococcus lugdunensis M23590] Length = 295 Score = 151 bits (382), Expect = 1e-34, Method: Composition-based stats. Identities = 44/275 (16%), Positives = 99/275 (36%), Gaps = 24/275 (8%) Query: 74 LISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE------SR 126 +I EY K L+ N+ ++ D+ I ++ E + Sbjct: 4 IIEEYLKFIQIEKGLSPNTIGAYRRDLDKYKLYLETRHIEHIDFIDRQTIQECLGYLIDQ 63 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + S +F++++R ++A+R++Y A +P + +E PK + + +++ + Sbjct: 64 GSSAKSLARFISTIRSFHQFALREKYAAKDPTVLLETPKYEKKLPDVLEIDEVVRLLEAP 123 Query: 187 SE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGF 241 G + R E + +G+R S+ ++++ + ++ K + L D Sbjct: 124 DLSKKNGYRDRTILELMYATGIRVSELVHIEIENINVIMGFVRVFGKGDKERIIPLGDTV 183 Query: 242 MKLLAM----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGV 289 + L F+N + ++ K K+ + K+ H + Sbjct: 184 IDYLKTYMKEIRPQLLKSTVTNVLFLNMHGKPLSRQGIWKMIKQYGIKSNITKTLTPHTL 243 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 R AT + GA + G + + YT Sbjct: 244 RHSFATHLLENGADLRAVQEMLGHSDISTTQLYTH 278 >gi|302187933|ref|ZP_07264606.1| site-specific recombinase, phage integrase family protein [Pseudomonas syringae pv. syringae 642] Length = 328 Score = 151 bits (382), Expect = 1e-34, Method: Composition-based stats. Identities = 65/325 (20%), Positives = 122/325 (37%), Gaps = 33/325 (10%) Query: 7 LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66 LPP + +HG Y RKG R L + + AY + G + Sbjct: 10 LPPCMY---LKHG-AYYLVRKGKWER--LGNDFQEALL-AYAKIVGGKSN---------- 52 Query: 67 KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126 + LI E + L+VN+ +E+ ++ +F+ R++ +H+ + Sbjct: 53 --GGMSLLIDEALDAMR-RRLSVNTIKQYEAASVRLKTYLEEFEPRQVLPRHVAALKLHM 109 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 TP+ A + ++ +R++F +A+ ++ V NPC + R K R + + + Sbjct: 110 SDTPNMANRVISFLRMVFAYALERQIVDSNPCTGIRRHAEKKR-DRYISDAEFAAICAAS 168 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246 SE + +E +G R SD + + + + + QKTG + V + LL Sbjct: 169 SEYMS--VIWEMCFLTGQRISDVLNIKLSDISDIGIAFEQQKTGAKLIVGMSQDLKALLD 226 Query: 247 ------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG-VNKSAHGVRKFSATISAD 299 G F + + ++ + F+A AG + + H +R S T + Sbjct: 227 RVHALPRKIRGATLFCARSGGKPVSYDTCKMSFRAACKAAGVIGATIHDLRAKSLTDTDR 286 Query: 300 AGATAHELMATYGWKTVDQAETYTK 324 G A G Y + Sbjct: 287 QGNNA---QMLGGHSDPRMTARYLR 308 >gi|254513968|ref|ZP_05126029.1| tyrosine recombinase XerD [gamma proteobacterium NOR5-3] gi|219676211|gb|EED32576.1| tyrosine recombinase XerD [gamma proteobacterium NOR5-3] Length = 302 Score = 151 bits (382), Expect = 1e-34, Method: Composition-based stats. Identities = 53/275 (19%), Positives = 100/275 (36%), Gaps = 23/275 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFD-----YRKITTKHIRSGVESRKHTPSSAIQFLTS 139 L+ N+ ++ R + + + + + + + K +P SA + L+ Sbjct: 24 KGLSENTLAAYRRDLQSFARWASTRNRSTTKVARTDIEAYLAYLLAHKRSPRSAARALSC 83 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRLA 195 +R ++ +R + +P L ++ P+ + ++ D+ + G + R Sbjct: 84 LRGYYRHLLRSGQLKEDPTLGLDSPRLGRPLPKTLSEADVDALLQAPNLEELIGFRDRCM 143 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLAM------- 247 E L GLR S+ V L N ++ + K G V + + + L Sbjct: 144 LELLYACGLRVSELTGLTVSQLSLNQGVVRISGKGGKERLVPVGEEALHWLQRYLREIRP 203 Query: 248 ---TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302 E F + Q M F K A AG++K S H +R AT + GA Sbjct: 204 QLLGETSSEVLFPSRRAQMMTRQTFWHRIKQHAITAGIHKPISPHVLRHAFATHLVNHGA 263 Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 + G + + YT A R RL +++ Sbjct: 264 DLRVVQLLLGHSDLSTTQIYTHVA-RQRLQSLHAK 297 >gi|116873397|ref|YP_850178.1| integrase/recombinase [Listeria welshimeri serovar 6b str. SLCC5334] gi|116742275|emb|CAK21399.1| integrase/recombinase [Listeria welshimeri serovar 6b str. SLCC5334] Length = 297 Score = 151 bits (382), Expect = 1e-34, Method: Composition-based stats. Identities = 49/288 (17%), Positives = 104/288 (36%), Gaps = 33/288 (11%) Query: 73 WLISEYRKSAHW----GSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGVE 124 LI ++ H+ L+ N+ +++ + D + I + Sbjct: 3 DLIEDFL---HFLIVEKGLSANTIKAYQRDLRYFVSYMETSKNLTDPNILERSDIVGFMA 59 Query: 125 ---SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 + S +++ S+R F + + ++ +P + +E PK+ + +D+++ Sbjct: 60 FARQEGKSARSVARYIASLRSFFHYLMHDGKMSHDPMIQIETPKQAQSLPKVLNLDDVEK 119 Query: 182 FKS----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE 236 S G + + E L +GLR ++ R + L ++ I+T K + Sbjct: 120 LLSSSDISTPLGLRDQAMMEILYATGLRVTELVRLKMDDLHLHMGFIQTIGKGDKERIIP 179 Query: 237 L-----------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284 L + L + F+N+ Q + F K A ++G+ K Sbjct: 180 LGKTATTVLEQYLEEARPKLRRPKYRNDFVFLNHHGQGLTRQGFWKILKGIAKESGIEKP 239 Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 + H +R AT + GA + G + + YT ++RL Sbjct: 240 ITPHTLRHSFATHLLENGADLRSVQELLGHADISTTQIYTH-VTKLRL 286 >gi|310642630|ref|YP_003947388.1| phage integrase:phage integrase, n-terminal sam-like protein [Paenibacillus polymyxa SC2] gi|309247580|gb|ADO57147.1| Phage integrase:Phage integrase, N-terminal SAM-like protein [Paenibacillus polymyxa SC2] Length = 314 Score = 151 bits (382), Expect = 1e-34, Method: Composition-based stats. Identities = 45/283 (15%), Positives = 102/283 (36%), Gaps = 32/283 (11%) Query: 76 SEYRKSAHWGSLAVNSRISFESY---FDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132 +Y + L+ ++ +++ F + G + H+ + K + Sbjct: 9 VQYME--EEKGLSRSTLEAYQRDVQQFAEFAESCGLEQPDNVQRSHLVLYLGHLKEQGKA 66 Query: 133 A---IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---- 185 A + + S+R F + +R+ +P + VE PK + T++++++ + Sbjct: 67 AATISRSVASIRSFFHFLIREGIAIHDPSVLVELPKATKKKPSVLTQDEIERLLAAPDVS 126 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK-TGTIITVELPDGFMKL 244 +G + + E L +G+R S+ V ++ ++ + G V + + Sbjct: 127 APQGGRDKAMLELLYATGIRVSELIALNVCDVRIDLRFVHCGGEAGKERVVPISREASQW 186 Query: 245 LAM-----------------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--S 285 +E F+N Q+++ F K A +AG++K + Sbjct: 187 AQAYLDEQRPALLRPGQGEEAQTKQEALFLNVSGQRLSRQGFWKIIKKYAQEAGISKDIT 246 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 H +R A + GA + G + + Y + A R Sbjct: 247 PHTLRHSFAVHMLEGGADLRSVQEMLGHADLATTQVYAQTARR 289 >gi|223043159|ref|ZP_03613206.1| tyrosine recombinase XerD [Staphylococcus capitis SK14] gi|314933674|ref|ZP_07841039.1| tyrosine recombinase XerD [Staphylococcus caprae C87] gi|222443370|gb|EEE49468.1| tyrosine recombinase XerD [Staphylococcus capitis SK14] gi|313653824|gb|EFS17581.1| tyrosine recombinase XerD [Staphylococcus caprae C87] Length = 295 Score = 151 bits (381), Expect = 1e-34, Method: Composition-based stats. Identities = 47/275 (17%), Positives = 96/275 (34%), Gaps = 24/275 (8%) Query: 74 LISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE------SR 126 +I EY L+ N+ ++ + + I + E Sbjct: 4 IIEEYLNFIQIEKGLSSNTIGAYRRDLKKYEEYLEERKISHIDFVDRQVIQECLGHLIDL 63 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + S +F++++R ++A+R+ Y A +P + +E PK + + +++ Sbjct: 64 GQSSKSLARFISTIRSFHQFALRERYAAKDPTVLIETPKYEKKLPDVLEVQEVLDLLETP 123 Query: 187 SE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGF 241 G + R E L +G+R S+ + V+ + + ++ K V L D Sbjct: 124 DLSKNNGYRDRTMLELLYATGMRVSEIIQLEVEDVNLMMGFVRVFGKGNKERIVPLGDAV 183 Query: 242 MKLLAM----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGV 289 ++ L F+N + ++ K KA +NK+ H + Sbjct: 184 IEYLTTYIETVRPQLLKQTVTHVLFLNMHGKPLSRQGIWKMIKQNGIKANINKTLTPHTL 243 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 R AT + GA + G + + YT Sbjct: 244 RHSFATHLLENGADLRAVQEMLGHSDISTTQLYTH 278 >gi|242373798|ref|ZP_04819372.1| tyrosine recombinase XerD [Staphylococcus epidermidis M23864:W1] gi|242348535|gb|EES40137.1| tyrosine recombinase XerD [Staphylococcus epidermidis M23864:W1] Length = 295 Score = 151 bits (381), Expect = 1e-34, Method: Composition-based stats. Identities = 47/275 (17%), Positives = 98/275 (35%), Gaps = 24/275 (8%) Query: 74 LISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE------SR 126 +I EY L+ N+ ++ ++ + I + E Sbjct: 4 IIEEYLNFIQIEKGLSSNTIGAYRRDLNKYKTYLEERKITHIDFVDRQVIQECLGHLIDL 63 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + S +F++++R ++A+R++Y A +P + +E PK + + +++ Sbjct: 64 GQSSKSLARFISTIRSFHQFALREKYAAKDPTVLIETPKYEKKLPDVLEVQEVLDLLETP 123 Query: 187 SE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGF 241 G + R E L +G+R S+ + V+ + + ++ K V L D Sbjct: 124 DLTKNNGYRDRTMLELLYATGMRVSEIIQLEVEDVNLMMGFVRVFGKGNKERIVPLGDAV 183 Query: 242 MKLLAM----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGV 289 ++ L F+N + ++ K KA +NK+ H + Sbjct: 184 IEYLTTYIETVRPQLLKQTVTHVLFLNMHGKPLSRQGIWKMIKQNGIKANINKTLTPHTL 243 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 R AT + GA + G + + YT Sbjct: 244 RHSFATHLLENGADLRAVQEMLGHSDISTTQLYTH 278 >gi|323187727|gb|EFZ73028.1| phage integrase family protein [Escherichia coli RN587/1] Length = 341 Score = 151 bits (381), Expect = 2e-34, Method: Composition-based stats. Identities = 62/330 (18%), Positives = 107/330 (32%), Gaps = 29/330 (8%) Query: 6 RLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65 RLPP V + Y K R ES + A L K E + R Sbjct: 12 RLPPNVYPNK------YSYVWKPTSR--------ESVTLTAIKDGLAALWKKYEETVNNR 57 Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125 + T L ++ SA + L+ ++ + + +++ G I +HIR ++ Sbjct: 58 DRAMTFGRLWEKFLASACYSELSPRTQKDYLQHQKKLLAVFGKVPADSIKPEHIRRYMDK 117 Query: 126 RKH-TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 R + + A +SM ++ W + YV NPC V + K K T ++ Q S Sbjct: 118 RGEQSKTQANHEKSSMSRVYSWGYERGYVKANPCAGVSKFKAKNRERYV-TDKEYQAVLS 176 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244 +A E R SD + + N+ I+ KTG Sbjct: 177 VAPL--PVFIAMEIAYLCAARISDVLSLKWEQIGNDGIFIQQGKTGKKQIKAWSPRLQAA 234 Query: 245 LAMTP--IGKETFFINNDKQKMNATQFSIWFKAKATKAG------VNKSAHGVRKFSATI 296 + N + F+ + +AG + + H + K Sbjct: 235 IEKAKQLPTSAYVISNQYGNRYMYKGFNEMWVEARNRAGKISGILTDFTFHDL-KAKGIS 293 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGA 326 + ++ + G KT Q Y + Sbjct: 294 DYE--GSSRDKQLFSGHKTEGQVLIYDRKV 321 >gi|319400839|gb|EFV89058.1| tyrosine recombinase XerD [Staphylococcus epidermidis FRI909] Length = 295 Score = 151 bits (381), Expect = 2e-34, Method: Composition-based stats. Identities = 47/276 (17%), Positives = 97/276 (35%), Gaps = 24/276 (8%) Query: 73 WLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE------S 125 +I EY L+ N+ ++ + D I + E Sbjct: 3 NIIDEYLNFIQIEKGLSNNTIGAYRRDLKKYKDYLEDNKISHIDFIDRQIIQECLGHLID 62 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + S +F++++R ++A+R++Y A +P + +E PK + + ++ Sbjct: 63 MGQSSKSLARFISTIRSFHQFALREKYAAKDPTVLIETPKYEKKLPDVLEINEVIALLET 122 Query: 186 WSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG 240 G + R E L +G+R ++ + V+ + + ++ K V L D Sbjct: 123 PDLAKNNGYRDRTMLELLYATGMRVTEIIQLDVEDVNLMMGFVRVFGKGNKERIVPLGDT 182 Query: 241 FMKLLAM----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHG 288 ++ L + F+N + ++ K KA +NK+ H Sbjct: 183 VIEYLTTYIETVRPQLLKQTTTQALFLNMHGKSLSRQGIWKIIKQYGLKANINKTLTPHT 242 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 +R AT + GA + G + + YT Sbjct: 243 LRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTH 278 >gi|90961911|ref|YP_535827.1| integrase/recombinase XerD/RipX family [Lactobacillus salivarius UCC118] gi|90821105|gb|ABD99744.1| Integrase/recombinase, XerD/RipX family [Lactobacillus salivarius UCC118] Length = 297 Score = 151 bits (381), Expect = 2e-34, Method: Composition-based stats. Identities = 50/269 (18%), Positives = 113/269 (42%), Gaps = 25/269 (9%) Query: 85 GSLAVNSRISFE---SYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI----QFL 137 L+ N+ S+ F + +R++ ++++ + I + ++S K+ + A + + Sbjct: 18 RGLSENTINSYGIDFKLFLEYLRENEIPSFKQVNKEVIVNYMQSEKNN-NKANSSILRSV 76 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPR 193 +S+R F++ +++ + +P L ++ PK+K + TKE++++ + G + R Sbjct: 77 SSLRKFFQYLAQEKIIEKDPMLLIDTPKKKQHLPQVLTKEEVEKLLRSPNTGQVLGLRDR 136 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAM----- 247 E + +GLR S+ ++ L + +++T K V + D +K + Sbjct: 137 AMLELMYATGLRISEIINLKLEDLHLTMGTLQTLGKGHKERIVPVGDEAIKWVNRYLEEA 196 Query: 248 -----TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300 F+N + KA+ KAG+ K + H +R AT + Sbjct: 197 RPKLLKQKRSNYLFLNFHGNNLTRQGVWKNLKAEVRKAGIQKNITPHTLRHSFATHILEN 256 Query: 301 GATAHELMATYGWKTVDQAETYTKGADRI 329 GA + G + + YT +++ Sbjct: 257 GADLRIVQELLGHADISTTQIYTHLSNKQ 285 >gi|327440847|dbj|BAK17212.1| site-specific recombinase XerD [Solibacillus silvestris StLB046] Length = 300 Score = 151 bits (381), Expect = 2e-34, Method: Composition-based stats. Identities = 49/292 (16%), Positives = 110/292 (37%), Gaps = 33/292 (11%) Query: 71 LKWLISEYRKSAHW----GSLAVNSRISFESYFDQIIRKSG----DFDYRKITTKHIRSG 122 LK I +Y H+ L+ N+ S++ R ++ + +HI Sbjct: 4 LKDSIEDYL---HFIKVERQLSDNTLQSYKRDLVAYARHIHYEQQIMEFDNVMREHILLY 60 Query: 123 VESRKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179 ++S + + + + ++S+R ++ +R++ +P + +E PK++ + + E++ Sbjct: 61 LDSLRSVGKSSKTISRQISSIRSFHQFLLREKVTNQDPTVHLEMPKKELSLPKVLSIEEI 120 Query: 180 QQFKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIIT 234 + +G++ E + SG+R S+ ++ + + ++ K G Sbjct: 121 DALLTAPSVEKPQGTRDIAILEMMYGSGMRISELIDLNLEDVHLTMGFVRVFGKGGKERI 180 Query: 235 VEL-----------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283 + L + L + + FFI ++ K A AG++ Sbjct: 181 IPLGRSAIQACINYLEQARPQLLGDALKNDAFFITQRGKRFTRQGCWKIIKEHAATAGIS 240 Query: 284 K--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 K + H +R AT + GA + G + + YT + RL Sbjct: 241 KEITPHVLRHSFATHLIENGADLRAVQELLGHADISTTQIYTH-VSKTRLSE 291 >gi|89099048|ref|ZP_01171927.1| tyrosine recombinase [Bacillus sp. NRRL B-14911] gi|89086178|gb|EAR65300.1| tyrosine recombinase [Bacillus sp. NRRL B-14911] Length = 297 Score = 151 bits (381), Expect = 2e-34, Method: Composition-based stats. Identities = 45/265 (16%), Positives = 100/265 (37%), Gaps = 25/265 (9%) Query: 85 GSLAVNSRISFES----YFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI---QFL 137 LA N+ +S+E Y I++ G ++ HI ++ K SA + + Sbjct: 16 KGLANNTIVSYERDLKNYLKFIVKSEGLASLNEVQRVHIVQFLKKLKEQGKSAKTLARHI 75 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ----PR 193 S+R ++ +R++ +P + +E P+++ + + +++ S+ S + Sbjct: 76 ASIRAFHQFLLREKVCENDPSVHIESPQQERSLPKVLSMAEVETLLESPSDSSHYSLRDK 135 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAM----- 247 E L +G+R S+ + + + ++ K + + + + Sbjct: 136 AMLELLYATGIRVSELIGLQIGDVHLTMGFVRCIGKGNKERIIPIGKTASEAIERYLLHG 195 Query: 248 ------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299 +T F+N+ +++ F K A AG+ K + H +R AT + Sbjct: 196 RPNFVSKSRRDDTLFLNHHGRQLTRQGFWKILKKLAGDAGIEKELTPHTLRHSFATHLLE 255 Query: 300 AGATAHELMATYGWKTVDQAETYTK 324 GA + G + + YT Sbjct: 256 NGADLRAVQEMLGHADISTTQIYTH 280 >gi|301020468|ref|ZP_07184556.1| site-specific recombinase, phage integrase family [Escherichia coli MS 196-1] gi|299881824|gb|EFI90035.1| site-specific recombinase, phage integrase family [Escherichia coli MS 196-1] Length = 341 Score = 151 bits (381), Expect = 2e-34, Method: Composition-based stats. Identities = 61/330 (18%), Positives = 107/330 (32%), Gaps = 29/330 (8%) Query: 6 RLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65 +LPP V + Y K R ES + A L K E + R Sbjct: 12 KLPPNVYPNK------YSYVWKPTSR--------ESVTLTAIKDGLAALWKKYEETVNNR 57 Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125 + T L ++ SA + L+ ++ + + +++ G I +HIR ++ Sbjct: 58 DRAMTFGRLWEKFLASACYSDLSPRTQKDYLQHQKKLLAVFGKVPADSIKPEHIRRYMDK 117 Query: 126 RKH-TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 R + + A +SM ++ W + YV NPC V + K K T ++ Q S Sbjct: 118 RGEQSKTQANHEKSSMSRVYSWGYERGYVKANPCAGVSKFKAKNRERYV-TDKEYQAVLS 176 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244 +A E R SD + + N+ I+ KTG Sbjct: 177 VAPL--PVFIAMEIAYLCAARVSDVLSLKWEQIGNDGIFIQQGKTGKKQIKAWSPRLQAA 234 Query: 245 LAMTP--IGKETFFINNDKQKMNATQFSIWFKAKATKAG------VNKSAHGVRKFSATI 296 + N + F+ + +AG + + H + K Sbjct: 235 IEKAKQLPKSAYVISNQYGNRYMYKGFNEMWVEARNRAGKISGILTDFTFHDL-KAKGIS 293 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGA 326 + ++ + G KT Q Y + Sbjct: 294 DYE--GSSRDKQLFSGHKTEGQVLIYDRKV 321 >gi|300214635|gb|ADJ79051.1| Integrase/recombinase, XerD/RipX family [Lactobacillus salivarius CECT 5713] Length = 297 Score = 151 bits (381), Expect = 2e-34, Method: Composition-based stats. Identities = 50/269 (18%), Positives = 113/269 (42%), Gaps = 25/269 (9%) Query: 85 GSLAVNSRISFE---SYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI----QFL 137 L+ N+ S+ F + +R++ ++++ + I + ++S K+ + A + + Sbjct: 18 RGLSENTINSYGIDLKLFLEYLRENEIPSFKQVNKEVIVNYMQSEKNN-NKANSSILRSV 76 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPR 193 +S+R F++ +++ + +P L ++ PK+K + TKE++++ + G + R Sbjct: 77 SSLRKFFQYLAQEKIIEKDPMLLIDTPKKKQHLPQVLTKEEVEKLLRSPNTGQVLGLRDR 136 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAM----- 247 E + +GLR S+ ++ L + +++T K V + D +K + Sbjct: 137 AMLELMYATGLRISEIINLKLEDLHLTMGTLQTLGKGHKERIVPVGDEAIKWVNRYLEEA 196 Query: 248 -----TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300 F+N + KA+ KAG+ K + H +R AT + Sbjct: 197 RPKLLKQKRSNYLFLNFHGNNLTRQGVWKNLKAEVRKAGIQKNITPHTLRHSFATHILEN 256 Query: 301 GATAHELMATYGWKTVDQAETYTKGADRI 329 GA + G + + YT +++ Sbjct: 257 GADLRIVQELLGHADISTTQIYTHLSNKQ 285 >gi|319892482|ref|YP_004149357.1| Tyrosine recombinase XerD [Staphylococcus pseudintermedius HKU10-03] gi|317162178|gb|ADV05721.1| Tyrosine recombinase XerD [Staphylococcus pseudintermedius HKU10-03] gi|323464415|gb|ADX76568.1| tyrosine recombinase XerD [Staphylococcus pseudintermedius ED99] Length = 295 Score = 150 bits (380), Expect = 2e-34, Method: Composition-based stats. Identities = 43/275 (15%), Positives = 98/275 (35%), Gaps = 24/275 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR------SGVESRKHTPSSAIQFLT 138 L+ N+ ++ + + + + + + + + +F + Sbjct: 16 KGLSNNTIAAYRRDLNHYLNYLAEHKVANLNFVDRQMIQEWFGFLHDEGRSAKTIARFTS 75 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRL 194 ++R ++A+R+ Y + +P + +E PK + + +++Q E G + + Sbjct: 76 TIRSFHQFALRENYTSHDPTVLIETPKYDRKLPDVLSIAEVEQLLMAPDESKVNGYRDKT 135 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAM------ 247 E L +G+R S+ V+ + + +K K V L + + L Sbjct: 136 MLELLYATGIRVSELINIEVEDINLMMGFVKVFGKGSKERIVPLGETVIDCLTHYIQNIR 195 Query: 248 ----TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAG 301 F+N + ++ K KAG+ K + H +R AT + G Sbjct: 196 PQLLKHTVTHVLFLNLHGKPLSRQGVWKMIKQTGVKAGIMKRLTPHTLRHSFATHLLENG 255 Query: 302 ATAHELMATYGWKTVDQAETYTK-GADRIRLGIKN 335 A + G + + YT ++IR ++ Sbjct: 256 ADLRAVQDMLGHSDISTTQLYTHITKNQIRKIYQD 290 >gi|307823520|ref|ZP_07653749.1| tyrosine recombinase XerD [Methylobacter tundripaludum SV96] gi|307735505|gb|EFO06353.1| tyrosine recombinase XerD [Methylobacter tundripaludum SV96] Length = 294 Score = 150 bits (380), Expect = 2e-34, Method: Composition-based stats. Identities = 56/286 (19%), Positives = 104/286 (36%), Gaps = 24/286 (8%) Query: 74 LISEYRKSAHW--GSLAVNSRISFESYFDQIIRKSGDFDYRKI---TTKHIRSGVESRKH 128 LI ++ A W L+ N+ ++ S + D ++ G Sbjct: 6 LIDQFL-DAVWVEQGLSENTLSAYGSDLRIFAKWLKDKPILEVDGGQLSDFLEGRHKEGI 64 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-- 186 S + L+S+R + + +R+ + I+P +E P + ++ D++ Sbjct: 65 GNRSTARILSSLRRFYGYYIRENSIKIDPTALIESPHIGQPLPKSLSELDVELLLDAPEV 124 Query: 187 --SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT--------IITVE 236 + G + R E L +GLR S+ + + ++ G + + Sbjct: 125 TNALGFRDRTMLEMLYATGLRVSELVNLKFEQISFRQGVVRIIGKGNKERLVPVGEVAMG 184 Query: 237 LPDGFMKLLAMTPIGK---ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRK 291 + +M T +G+ + F+ N M F K A KA +NK S H +R Sbjct: 185 WLEEYMVQARKTILGERQCDYLFVTNRADSMTRQAFWHIIKRHAKKAQINKELSPHTLRH 244 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 AT + GA + G + + YT A R RL +S+ Sbjct: 245 AFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHIA-RERLKELHSK 289 >gi|293376592|ref|ZP_06622820.1| tyrosine recombinase XerD [Turicibacter sanguinis PC909] gi|292644818|gb|EFF62900.1| tyrosine recombinase XerD [Turicibacter sanguinis PC909] Length = 305 Score = 150 bits (380), Expect = 2e-34, Method: Composition-based stats. Identities = 47/262 (17%), Positives = 104/262 (39%), Gaps = 22/262 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDY---RKITTKHIRSGV---ESRKHTPSSAIQFLT 138 L++N++IS+E + + + +I +H++ + R S + L+ Sbjct: 20 RGLSLNTKISYERDLTEYLLYLQNQSVHQLDEIRREHVQQYLITLYERNLNTKSVARHLS 79 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRL 194 ++R ++ + ++ NPC +E PK K + ++++ S ++ + + + Sbjct: 80 AIRSFHQYLMIEKISNTNPCELIESPKLKRHLPEILSIDEVEHLLSSFNTKTVNDIRNKA 139 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLL-------- 245 E + SGLR S+ + + + ++ ++ K V + + +LL Sbjct: 140 MVELMYASGLRVSELLQLKLDDVHLSMMFVRCVGKGDKERIVPIGEVATELLQLYLDTAR 199 Query: 246 -AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302 + + F+N + M F K +A +AG+ K S H +R AT + G Sbjct: 200 PKLLKKSNDWLFLNRFGEVMTRQGFWKILKKQAKEAGIEKEISPHKLRHSFATHLIENGV 259 Query: 303 TAHELMATYGWKTVDQAETYTK 324 + G + + YT Sbjct: 260 DLRLVQEMLGHSDISTTQIYTH 281 >gi|160891605|ref|ZP_02072608.1| hypothetical protein BACUNI_04058 [Bacteroides uniformis ATCC 8492] gi|317478317|ref|ZP_07937481.1| tyrosine recombinase XerD [Bacteroides sp. 4_1_36] gi|156859012|gb|EDO52443.1| hypothetical protein BACUNI_04058 [Bacteroides uniformis ATCC 8492] gi|316905476|gb|EFV27266.1| tyrosine recombinase XerD [Bacteroides sp. 4_1_36] Length = 317 Score = 150 bits (380), Expect = 2e-34, Method: Composition-based stats. Identities = 62/298 (20%), Positives = 116/298 (38%), Gaps = 27/298 (9%) Query: 58 REYINSPRKKPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQII-----RKSGDFDY 111 + S K+ TL +I +Y + +L+ N+ ++++ +++ D Sbjct: 2 KSEEKSTNKEKQTL--IIRKYHQYLKLEKALSPNTVDAYQTDLQKLLHFLEGEGIAILDT 59 Query: 112 RKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171 +H SG+ P S + L+ ++ F + V +Y+ +P +E PK + Sbjct: 60 TLDDLQHFASGLHDIGIHPRSQARILSGIKSFFHFLVMADYLEGDPSELLEGPKIGFKLP 119 Query: 172 RPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ 227 T E++ + S G+ + R E L GLR S+ C + L + IK + Sbjct: 120 EVLTVEEIDRIISAIDLGTNEGQRNRAILETLYSCGLRVSELCNLKISDLYFDEGFIKVE 179 Query: 228 KTGTIIT-VELPDGFMKLLAMTPIGK-----------ETFFINNDKQKMNATQFSIWFKA 275 G+ V + +K + + + + F+ + ++ K Sbjct: 180 GKGSKQRLVPISSRAIKEIRNWFVDRNGGWKIKKDFEDYVFLARWGKNISRIMVFHLIKE 239 Query: 276 KATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 A KAG+ K S H R AT + GA + + G +++ E YT DR RL Sbjct: 240 LAKKAGITKNISPHTFRHSFATHLLEGGANLRAIQSMLGHESIATTEIYTH-IDRHRL 296 >gi|325839425|ref|ZP_08166864.1| tyrosine recombinase XerD [Turicibacter sp. HGF1] gi|325490545|gb|EGC92861.1| tyrosine recombinase XerD [Turicibacter sp. HGF1] Length = 305 Score = 150 bits (380), Expect = 2e-34, Method: Composition-based stats. Identities = 47/262 (17%), Positives = 104/262 (39%), Gaps = 22/262 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDY---RKITTKHIRSGV---ESRKHTPSSAIQFLT 138 L++N++IS+E + + + +I +H++ + R S + L+ Sbjct: 20 RGLSLNTKISYERDLTEYLLYLQNQSVHQLDEIRREHVQQYLITLYERNLNTKSVARHLS 79 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRL 194 ++R ++ + ++ NPC +E PK K + ++++ S ++ + + + Sbjct: 80 AIRSFHQYLMIEKISNTNPCELIESPKLKRHLPEILSIDEVEHLLSSFNTKTVNDIRNKA 139 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLAM------ 247 E + SGLR S+ + + + ++ ++ K V + + +LL + Sbjct: 140 MVELMYASGLRVSELLQLKLDDVHLSMMFVRCVGKGDKERIVPIGEVATELLQLYLDTAR 199 Query: 248 ---TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302 + F+N + M F K +A +AG+ K S H +R AT + G Sbjct: 200 PNLLKKSNDWLFLNRFGEVMTRQGFWKILKKQAKEAGIEKEISPHKLRHSFATHLIENGV 259 Query: 303 TAHELMATYGWKTVDQAETYTK 324 + G + + YT Sbjct: 260 DLRLVQEMLGHSDISTTQIYTH 281 >gi|227890931|ref|ZP_04008736.1| site-specific DNA tyrosine recombinase, XerD [Lactobacillus salivarius ATCC 11741] gi|227867340|gb|EEJ74761.1| site-specific DNA tyrosine recombinase, XerD [Lactobacillus salivarius ATCC 11741] Length = 290 Score = 150 bits (380), Expect = 2e-34, Method: Composition-based stats. Identities = 49/269 (18%), Positives = 113/269 (42%), Gaps = 25/269 (9%) Query: 85 GSLAVNSRISFE---SYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI----QFL 137 L+ N+ S+ F + +R++ ++++ + I + +++ K+ + A + + Sbjct: 11 RGLSENTINSYGIDLKLFLEYLRENEIPSFKQVNKEVIVNYMQAEKNN-NKANSSILRSV 69 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPR 193 +S+R F++ +++ + +P L ++ PK+K + TKE++++ + G + R Sbjct: 70 SSLRKFFQYLAQEKIIEKDPMLLIDTPKKKQHLPQVLTKEEVEKLLHSPNTGQVLGLRDR 129 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAM----- 247 E + +GLR S+ ++ L + +++T K V + D +K + Sbjct: 130 AMLELMYATGLRISEIINLKLEDLHLTMGTLQTLGKGHKERIVPVGDEAIKWVNRYLEEA 189 Query: 248 -----TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300 F+N + KA+ KAG+ K + H +R AT + Sbjct: 190 RPKLLKQKRSNYLFLNFHGNNLTRQGVWKNLKAEVRKAGIQKNITPHTLRHSFATHILEN 249 Query: 301 GATAHELMATYGWKTVDQAETYTKGADRI 329 GA + G + + YT +++ Sbjct: 250 GADLRIVQELLGHADISTTQIYTHLSNKQ 278 >gi|56707324|ref|YP_169220.1| integrase/recombinase [Francisella tularensis subsp. tularensis SCHU S4] gi|110669794|ref|YP_666351.1| integrase/recombinase [Francisella tularensis subsp. tularensis FSC198] gi|224456388|ref|ZP_03664861.1| integrase/recombinase [Francisella tularensis subsp. tularensis MA00-2987] gi|254370002|ref|ZP_04986009.1| site-specific recombinase [Francisella tularensis subsp. tularensis FSC033] gi|254874160|ref|ZP_05246870.1| integrase/recombinase [Francisella tularensis subsp. tularensis MA00-2987] gi|54114539|gb|AAV29903.1| NT02FT0289 [synthetic construct] gi|56603816|emb|CAG44787.1| Integrase/recombinase [Francisella tularensis subsp. tularensis SCHU S4] gi|110320127|emb|CAL08170.1| Integrase/recombinase [Francisella tularensis subsp. tularensis FSC198] gi|151568247|gb|EDN33901.1| site-specific recombinase [Francisella tularensis subsp. tularensis FSC033] gi|254840159|gb|EET18595.1| integrase/recombinase [Francisella tularensis subsp. tularensis MA00-2987] gi|282158450|gb|ADA77841.1| Integrase/recombinase [Francisella tularensis subsp. tularensis NE061598] Length = 292 Score = 150 bits (380), Expect = 2e-34, Method: Composition-based stats. Identities = 44/265 (16%), Positives = 89/265 (33%), Gaps = 20/265 (7%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKI---TTKHIRSGVESRKHTPSSAIQFLTSMR 141 L+ N+ S+ + + D + S ++ S + ++++R Sbjct: 16 HGLSQNTISSYRTDLKFLQNYFAKTDLISLDFEQLYAFISYRSKNGYSSHSNARMISTLR 75 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAFE 197 + W + NP + PK + + T+ D+++ G + + E Sbjct: 76 KFYAWLISTGQTNNNPTAKLTLPKLAKKLPKDMTETDVERLLQAPDMTEDVGIRDKAMLE 135 Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-IITVELPDGFMKLLAMTPIGKE--- 253 + +GLR S+ + + NI I+ G+ V + + ++ L Sbjct: 136 LMYATGLRVSELVGLNIDDIDINIGVIQVMGKGSKERIVPIGEYALEYLQKYFAEARRSL 195 Query: 254 -------TFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATA 304 FI+ +++ F K A AG+ + S H +R AT + GA Sbjct: 196 SENFKEKAVFISKHAKRITRQSFWHRIKNYALIAGINTDISPHTLRHAFATHLLNHGADL 255 Query: 305 HELMATYGWKTVDQAETYTKGADRI 329 + G V YT + Sbjct: 256 RSVQLLLGHSNVSTTTIYTHISQNR 280 >gi|170682438|ref|YP_001743215.1| phage integrase family site specific recombinase [Escherichia coli SMS-3-5] gi|331652781|ref|ZP_08353787.1| putative integrase for prophage [Escherichia coli M718] gi|331683632|ref|ZP_08384228.1| putative integrase for prophage [Escherichia coli H299] gi|170520156|gb|ACB18334.1| site-specific recombinase, phage integrase family [Escherichia coli SMS-3-5] gi|284921955|emb|CBG35031.1| phage integrase [Escherichia coli 042] gi|331049537|gb|EGI21608.1| putative integrase for prophage [Escherichia coli M718] gi|331078584|gb|EGI49786.1| putative integrase for prophage [Escherichia coli H299] Length = 341 Score = 150 bits (380), Expect = 2e-34, Method: Composition-based stats. Identities = 61/330 (18%), Positives = 108/330 (32%), Gaps = 29/330 (8%) Query: 6 RLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65 +LPP V + Y K R ES + A L K E + R Sbjct: 12 KLPPNVYPNK------YSYVWKPTSR--------ESVTLTAIKDGLAALWKKYEETVNNR 57 Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125 + T L ++ SA++ L+ ++ + + +++ G I +HIR ++ Sbjct: 58 DRAMTFGRLWEKFLASAYYSDLSPRTQKDYLQHQKKLLAVFGKVPADSIKPEHIRRYMDK 117 Query: 126 RKH-TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 R + + A +SM ++ W + YV NPC V + K K T ++ Q S Sbjct: 118 RGEQSKTQANHEKSSMSRVYSWGYERGYVKANPCAGVSKFKAKNRERYV-TDKEYQAVLS 176 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244 +A E R SD + + N+ I+ KTG Sbjct: 177 VAPL--PVFIAMEIAYLCAARVSDVLSLKWEQIGNDGIFIQQGKTGKKQIKAWSPRLQAA 234 Query: 245 LAMTP--IGKETFFINNDKQKMNATQFSIWFKAKATKAG------VNKSAHGVRKFSATI 296 + N + F+ + +AG + + H + K Sbjct: 235 IEKAKQLPKSAYVISNQYGNRYMYKGFNEMWVDARNRAGKISGILTDFTFHDL-KAKGIS 293 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGA 326 + ++ + G KT Q Y + Sbjct: 294 DYE--GSSRDKQLFSGHKTEGQVLIYDRKV 321 >gi|253988692|ref|YP_003040048.1| site-specific tyrosine recombinase XerD [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|211637984|emb|CAR66612.1| tyrosine recombinase xerd [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253780142|emb|CAQ83303.1| tyrosine recombinase xerd [Photorhabdus asymbiotica] Length = 303 Score = 150 bits (380), Expect = 2e-34, Method: Composition-based stats. Identities = 54/284 (19%), Positives = 105/284 (36%), Gaps = 27/284 (9%) Query: 74 LISEYRKSAHW--GSLAVNSRISFE---SYFDQIIRKSGD--FDYRKITTKHIRSGVESR 126 LI ++ A W LA N+ IS+ D + G + I + + Sbjct: 12 LIEQFL-DAIWLEHDLAENTLISYRLDLQALDNWLVNYGHDLLSVQSIDLQSFLAERVDG 70 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF- 185 + SS+ + L++MR LF++ R++ A +P + PK + +++ ++ + Sbjct: 71 GYKASSSARLLSAMRQLFQYFYREKMRADDPTALLSAPKLPKRLPKDLSEKQVEALLNAP 130 Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT-------- 234 + + E L GLR S+ + + ++ G Sbjct: 131 CTDQPVELRDKAMLEVLYACGLRVSELVGLTLSDVSLRQGVVRVIGKGNKERLVPLGEEA 190 Query: 235 VELPDGFMKLLAMTPIGKETF---FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHG 288 + + +++ + T F +N ++M F K A AG++ S H Sbjct: 191 IYWLENYIEYGRDGLLNGATLDVLFPSNRGRQMTRQTFWYRIKHYALLAGIDTERLSPHV 250 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRL 331 +R AT + GA + G + + YT A +R+RL Sbjct: 251 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRL 294 >gi|241667835|ref|ZP_04755413.1| site-specific recombinase [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254876378|ref|ZP_05249088.1| site-specific recombinase [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254842399|gb|EET20813.1| site-specific recombinase [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 292 Score = 150 bits (380), Expect = 2e-34, Method: Composition-based stats. Identities = 42/265 (15%), Positives = 88/265 (33%), Gaps = 20/265 (7%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKI---TTKHIRSGVESRKHTPSSAIQFLTSMR 141 L+ N+ S+ + + + + S ++ S + ++++R Sbjct: 16 HGLSQNTISSYRTDLKFLQSYFSQVELINLDFEQLYAFISYRSKNGYSSRSNARMISTLR 75 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAFE 197 + W + NP + PK + T+ D+++ G + + E Sbjct: 76 KFYNWLISTGQATTNPTTKLTLPKLAKRLPKDMTEVDVERLLQAPDLTDDIGIRDKAMLE 135 Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-IITVELPDGFMKLLAMTPIGKE--- 253 + +GLR S+ + N+ I+ G+ V + + ++ L Sbjct: 136 LMYATGLRVSELVGLNTNDIDLNVGVIQVMGKGSKERIVPIGEYALEYLHKYFEESRESL 195 Query: 254 -------TFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATA 304 FI+ +++ F K+ A AG+ + S H +R AT + GA Sbjct: 196 AKNFKEKAVFISKHSKRITRQSFWHRIKSYALIAGINTDISPHTLRHAFATHLLNHGADL 255 Query: 305 HELMATYGWKTVDQAETYTKGADRI 329 + G V YT + Sbjct: 256 RSVQLLLGHSNVSTTTIYTHISQNR 280 >gi|319900751|ref|YP_004160479.1| tyrosine recombinase XerD subunit [Bacteroides helcogenes P 36-108] gi|319415782|gb|ADV42893.1| tyrosine recombinase XerD subunit [Bacteroides helcogenes P 36-108] Length = 317 Score = 150 bits (380), Expect = 2e-34, Method: Composition-based stats. Identities = 55/275 (20%), Positives = 104/275 (37%), Gaps = 24/275 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD-----FDYRKITTKHIRSGVESRK 127 +I +Y + SL+ N+ ++++ ++++R D + +G+ Sbjct: 16 IIRKYNQYLRLEKSLSPNTLDAYQTDLEKLLRFLEDEKIDILAVTLDDLQRFTAGLHDIG 75 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 P S + L+ ++ F + V Y+ +P +E PK + T E++ + + Sbjct: 76 IHPRSQARILSGIKSFFHFLVLAGYLENDPSELLEGPKIGFKLPEVLTVEEIDRIIAAID 135 Query: 188 ----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT-VEL----- 237 EG + R E L GLR S+ C + L N IK + G+ V + Sbjct: 136 MNTNEGQRNRAILETLYSCGLRVSELCNLKISDLYFNEGFIKVEGKGSKQRLVPISHRAI 195 Query: 238 ------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGV 289 D + + ++ F+ ++ + K A KAG+ KS H Sbjct: 196 TEITNWLDDRKERWKIKKDFEDYVFLARWGNGISRIMIFHFIKELAEKAGITKSISPHTF 255 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 R AT + GA + G +++ E YT Sbjct: 256 RHSFATHLLEGGANLRAIQCMLGHESIATTEIYTH 290 >gi|134301363|ref|YP_001121331.1| tyrosine recombinase/integrase XerD [Francisella tularensis subsp. tularensis WY96-3418] gi|187931093|ref|YP_001891077.1| tyrosine recombinase XerD [Francisella tularensis subsp. mediasiatica FSC147] gi|134049140|gb|ABO46211.1| tyrosine recombinase/integrase XerD [Francisella tularensis subsp. tularensis WY96-3418] gi|187712002|gb|ACD30299.1| tyrosine recombinase XerD [Francisella tularensis subsp. mediasiatica FSC147] Length = 292 Score = 150 bits (380), Expect = 2e-34, Method: Composition-based stats. Identities = 44/265 (16%), Positives = 89/265 (33%), Gaps = 20/265 (7%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKI---TTKHIRSGVESRKHTPSSAIQFLTSMR 141 L+ N+ S+ + + D + S ++ S + ++++R Sbjct: 16 HGLSQNTISSYRTDLKFLQNYFAKTDLISLDFEQLYAFISYRSKNGYSSHSNARMISTLR 75 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAFE 197 + W + NP + PK + + T+ D+++ G + + E Sbjct: 76 KFYAWLISTGQTNNNPTAKLTLPKLAKKLPKDMTETDVERLLQAPDMTEDVGIRDKAMLE 135 Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-IITVELPDGFMKLLAMTPIGKE--- 253 + +GLR S+ + + NI I+ G+ V + + ++ L Sbjct: 136 LMYATGLRVSELVGLNIDDIDINIGVIQVMGKGSKERIVPIGEYALEYLQKYFAEARRSL 195 Query: 254 -------TFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATA 304 FI+ +++ F K A AG+ + S H +R AT + GA Sbjct: 196 SKNFKEKAVFISKHAKRITRQSFWHRIKNYALIAGINTDISPHTLRHAFATHLLNHGADL 255 Query: 305 HELMATYGWKTVDQAETYTKGADRI 329 + G V YT + Sbjct: 256 RSVQLLLGHSNVSTTTIYTHISQNR 280 >gi|291280177|ref|YP_003497012.1| tyrosine recombinase [Deferribacter desulfuricans SSM1] gi|290754879|dbj|BAI81256.1| tyrosine recombinase [Deferribacter desulfuricans SSM1] Length = 302 Score = 150 bits (380), Expect = 2e-34, Method: Composition-based stats. Identities = 46/270 (17%), Positives = 98/270 (36%), Gaps = 25/270 (9%) Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIR--KSGDFDYRKIT---TKHIRSGVESRKHTPSS 132 Y S ++ N+ S+ + + ++ K D ++I + + + + + SS Sbjct: 13 YLISER--QVSSNTVKSYLNDLNDLVSFIKDEDKSLKEIDYFALRMFVAYLYDKGFSKSS 70 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----QQFKSFWSE 188 + + ++R FK+ +++ + NP ++ PK+ + + + + + Sbjct: 71 IERKIATLRSFFKFLIKRGLIEDNPARMIKFPKKDKKLFTVFDIDTIFSLLELPDKETPS 130 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAM 247 G + L EFL +G+R S+ + + ++ K + + L D M L+ Sbjct: 131 GIRDALILEFLYGTGVRVSELVNIKLDDIDFGGMRVRIFGKGKKMRVIPLSDYIMDLIKK 190 Query: 248 -----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294 + + FIN + KAG+ N S H R A Sbjct: 191 YLSVRENIVQKGIVNTDHLFINKFGTALTDRSVRRIVDKYLKKAGLPLNYSPHSFRHTFA 250 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTK 324 T + GA + G ++ + YT Sbjct: 251 THLLENGADLRTIQKLLGHSSLATTQKYTH 280 >gi|300941166|ref|ZP_07155675.1| site-specific recombinase, phage integrase family [Escherichia coli MS 21-1] gi|294490096|gb|ADE88852.1| putative integrase for prophage CP-933U [Escherichia coli IHE3034] gi|300454112|gb|EFK17605.1| site-specific recombinase, phage integrase family [Escherichia coli MS 21-1] Length = 341 Score = 150 bits (380), Expect = 2e-34, Method: Composition-based stats. Identities = 61/330 (18%), Positives = 107/330 (32%), Gaps = 29/330 (8%) Query: 6 RLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65 +LPP V + Y K R ES + A L K E + R Sbjct: 12 KLPPNVYPNK------YSYVWKPTSR--------ESVTLTAIKDGLAALWKKYEETVNNR 57 Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125 + T L ++ SA + L+ ++ + + +++ G I +HIR ++ Sbjct: 58 DRAMTFGRLWEKFLASACYSDLSPRTQKDYLQHQKKLLAVFGKVPADSIKPEHIRRYMDK 117 Query: 126 RKH-TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 R + + A +SM ++ W + YV NPC V + K K T ++ Q S Sbjct: 118 RGEQSKTQANHEKSSMSRVYSWGYERGYVKANPCAGVSKFKAKNRERYV-TDKEYQAVLS 176 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244 +A E R SD + + N+ I+ KTG Sbjct: 177 VAPL--PVFIAMEIAYLCAARVSDVLSLKWEQIGNDGIFIQQGKTGKKQIKAWSPRLQAA 234 Query: 245 LAMTP--IGKETFFINNDKQKMNATQFSIWFKAKATKAG------VNKSAHGVRKFSATI 296 + N + F+ + +AG + + H + K Sbjct: 235 VEKAKQLPKSAYVISNQYGNRYMYKGFNEMWVEARNRAGKVSGILTDFTFHDL-KAKGIS 293 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGA 326 + ++ + G KT Q Y + Sbjct: 294 DYE--GSSRDKQLFSGHKTEGQVLIYDRKV 321 >gi|82701881|ref|YP_411447.1| tyrosine recombinase XerD [Nitrosospira multiformis ATCC 25196] gi|82409946|gb|ABB74055.1| Tyrosine recombinase XerD [Nitrosospira multiformis ATCC 25196] Length = 303 Score = 150 bits (380), Expect = 2e-34, Method: Composition-based stats. Identities = 54/271 (19%), Positives = 101/271 (37%), Gaps = 26/271 (9%) Query: 86 SLAVNSRISFESYFDQI-----IRKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFL 137 L+ N+ S+ S +Q +K D + +T + + R S+ + L Sbjct: 23 GLSRNTMESYRSDLEQFGDWFARQKPDDSSFLTVTHSDLLGFMTGRFSAGMKASTTSREL 82 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPR 193 +S++ +++ +RQ + +P L+++ P+ T+ D++ + G + R Sbjct: 83 SSLKRFYRFLLRQGKINADPTLNIDTPRLPRNLPVSLTEADVEALLGAPDVTFPLGLRDR 142 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPI-- 250 E L SGLR S+ + ++ ++ K G L + ++ + Sbjct: 143 AMLEVLYASGLRVSELVSLESGQISLDMGVVRIMGKGGKERLTPLGEEALEWMVRYIKEI 202 Query: 251 --------GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300 F+ M F K A +AG+ K S HG+R AT + Sbjct: 203 RPGLLDGKSSNALFVTYRGAGMTRQAFWYLIKRYARQAGITKPLSPHGLRHAFATHLLNH 262 Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRL 331 GA + G + + YT A R RL Sbjct: 263 GADLRVVQLLLGHADISTTQIYTHVA-RERL 292 >gi|86133541|ref|ZP_01052123.1| phage integrase family protein [Polaribacter sp. MED152] gi|85820404|gb|EAQ41551.1| phage integrase family protein [Polaribacter sp. MED152] Length = 298 Score = 150 bits (380), Expect = 2e-34, Method: Composition-based stats. Identities = 51/279 (18%), Positives = 98/279 (35%), Gaps = 25/279 (8%) Query: 71 LKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGV---- 123 K I++Y+ L+ N+ S+ +++ + D + I Sbjct: 3 WKNAINDYQLFLKIERGLSQNTIDSYTRDLNKLTQFLNVNDIEISPIKIDKEIVQQFIYD 62 Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 ++ P S + ++ +R F + V +++ NP +E PK + +++++ Sbjct: 63 VAKGVNPRSQARIISGLRSFFDYLVFEDFRETNPTDLIEAPKIGRKLPDTLSEDEINSLI 122 Query: 184 SF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELP 238 +G + R E L GLR S+ + L + F T K V + Sbjct: 123 QSIDLSHPQGERNRTILETLYSCGLRVSELITLKISDLYFDEGFIKVTGKGNKERFVPIH 182 Query: 239 DGFMKLL---------AMTPIGK--ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--S 285 K + + P+ +T F+N + + K A K +NK S Sbjct: 183 YNAQKYITTYIHQIRNQVKPVKSFEDTLFLNRRGKGLTRQMIFTILKDLAIKIDLNKKIS 242 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R AT GA + G +++ E Y Sbjct: 243 PHTLRHSFATHLLKNGADLRAIQQMLGHESITTTEVYVH 281 >gi|325124215|gb|ADY83738.1| site-specific tyrosine recombinase [Acinetobacter calcoaceticus PHEA-2] Length = 306 Score = 150 bits (379), Expect = 2e-34, Method: Composition-based stats. Identities = 54/292 (18%), Positives = 107/292 (36%), Gaps = 20/292 (6%) Query: 57 KREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF---DQIIRKSGDFDYRK 113 K+ I SP + P L +L +R +++ ++R ++ S ++ +KS +++ Sbjct: 4 KKPRIPSPVQIPEHLSFL-QGFRDYLVAQTVSPHTRNAYLSDLIQCSELHKKSALPEWKS 62 Query: 114 ITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173 + + +P S + L+++R +K+ Q+ + NP + PK + Sbjct: 63 DDIADVLIELTKAGKSPRSIARCLSALRQFYKFLREQKLRSDNPVATHHSPKIGRALPKD 122 Query: 174 WTKEDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQK 228 ++ED++ G + R FE L GLR S+ ++ + ++ T K Sbjct: 123 LSEEDVEALIQAPDINTALGLRDRAMFEVLYACGLRVSELLNLRLELINLKQGYLRITGK 182 Query: 229 TGTIITVELPDGFMKLLAMT---------PIGKETFFINNDKQKMNATQFSIWFKAKATK 279 V L + + + F+ M+ F K A + Sbjct: 183 GNKERLVPLGQFACEWVERYLQDARPQLYKSSTDYLFLTQHGGIMSRQNFWYAIKRYALQ 242 Query: 280 AGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 A + S H +R AT + GA + G + + YT A Sbjct: 243 ANIQAELSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQVR 294 >gi|117624154|ref|YP_853067.1| putative phage integrase [Escherichia coli APEC O1] gi|115513278|gb|ABJ01353.1| putative phage integrase [Escherichia coli APEC O1] Length = 341 Score = 150 bits (379), Expect = 3e-34, Method: Composition-based stats. Identities = 61/330 (18%), Positives = 108/330 (32%), Gaps = 29/330 (8%) Query: 6 RLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65 +LPP V + Y K R ES + A L K E + R Sbjct: 12 KLPPNVYPNK------YSYVWKPTSR--------ESVTLTAIKDGLAALWKKYEETVNNR 57 Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125 + T L ++ SA++ L+ ++ + + +++ G I +HIR ++ Sbjct: 58 DRAMTFGRLWEKFLASAYYSDLSPRTQKDYLQHQKKLLAVFGKVPADSIKPEHIRRYMDK 117 Query: 126 RKH-TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 R + + A +SM ++ W + YV NPC V + K K T ++ Q S Sbjct: 118 RGEQSKTQANHEKSSMSRVYSWGYERGYVKANPCAGVSKFKAKNRERYV-TDKEYQAVLS 176 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244 +A E R SD + + N+ I+ KTG Sbjct: 177 VAPL--PVFIAMEIAYLCAARVSDVLSLKWEQIGNDGIFIQQGKTGKKQIKAWSPRLQAA 234 Query: 245 LAMTP--IGKETFFINNDKQKMNATQFSIWFKAKATKAG------VNKSAHGVRKFSATI 296 + N + F+ + +AG + + H + K Sbjct: 235 IEKAKQLPTSAYVISNQYGNRYMYKGFNEMWVDARNRAGKISGILTDFTFHDL-KAKGIS 293 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGA 326 + ++ + G KT Q Y + Sbjct: 294 DYE--GSSRDKQLFSGHKTEGQVLIYDRKV 321 >gi|46143544|ref|ZP_00135036.2| COG4974: Site-specific recombinase XerD [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126209006|ref|YP_001054231.1| site-specific tyrosine recombinase XerD [Actinobacillus pleuropneumoniae L20] gi|303253035|ref|ZP_07339187.1| site-specific tyrosine recombinase XerD [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307246462|ref|ZP_07528535.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307248587|ref|ZP_07530602.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|307255445|ref|ZP_07537252.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307257614|ref|ZP_07539374.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|307259897|ref|ZP_07541611.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|307262027|ref|ZP_07543682.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|126097798|gb|ABN74626.1| tyrosine recombinase XerD [Actinobacillus pleuropneumoniae serovar 5b str. L20] gi|302648099|gb|EFL78303.1| site-specific tyrosine recombinase XerD [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|306852666|gb|EFM84898.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306854937|gb|EFM87125.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306861629|gb|EFM93616.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306863917|gb|EFM95840.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306866067|gb|EFM97941.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306868310|gb|EFN00132.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 297 Score = 150 bits (379), Expect = 3e-34, Method: Composition-based stats. Identities = 45/284 (15%), Positives = 95/284 (33%), Gaps = 24/284 (8%) Query: 71 LKWLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGVES 125 L +I ++ + L+ N+ ++ + + G Sbjct: 4 LDPIIEQFLDTLWQEHGLSENTSAAYRLDLESFSEWLPTPKAFLTLDHFDLQAFLGGRLE 63 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----QQ 181 + +S+ + L+ +R F++ + Y +P L++ P++ + ++E + Sbjct: 64 LGYKATSSARMLSCLRKFFRFLYTENYRQDDPTLTLTSPRKPAHLPKSLSEEQVMDLLDS 123 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG 240 + + + E L +GLR S+ + +L ++ K V + + Sbjct: 124 PNTLDPIELRDKAMLELLYATGLRVSELVSLSIDNLSLRQGVVRVVGKGDKERLVPIGEE 183 Query: 241 FMKLLAMTPIGKETFFINN----------DKQKMNATQFSIWFKAKATKAGVN---KSAH 287 + +NN Q+M F K A AG++ S H Sbjct: 184 AGYWIQEFFRYGRAILLNNLQSDVVFPSRRGQQMTRQTFWHRIKHYAVLAGIDSEKLSPH 243 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 +R AT + GA + G + + YT A + RL Sbjct: 244 VLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVA-KARL 286 >gi|281601440|gb|ADA74424.1| putative phage integrase [Shigella flexneri 2002017] gi|313649784|gb|EFS14207.1| phage integrase family protein [Shigella flexneri 2a str. 2457T] gi|315618062|gb|EFU98654.1| phage integrase family protein [Escherichia coli 3431] gi|320193246|gb|EFW67884.1| Putative integrase [Escherichia coli WV_060327] gi|332091590|gb|EGI96671.1| phage integrase family protein [Shigella dysenteriae 155-74] Length = 341 Score = 150 bits (379), Expect = 3e-34, Method: Composition-based stats. Identities = 61/330 (18%), Positives = 108/330 (32%), Gaps = 29/330 (8%) Query: 6 RLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65 +LPP V + Y K R ES + A L K E + R Sbjct: 12 KLPPNVYPNK------YSYVWKPTSR--------ESVTLTAIKDGLAALWKKYEETVNNR 57 Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125 + T L ++ SA++ L+ ++ + + +++ G I +HIR ++ Sbjct: 58 DRAMTFGRLWEKFLASAYYSDLSPRTQKDYLQHQKKLLAVFGKVPADSIKPEHIRRYMDK 117 Query: 126 RKH-TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 R + + A +SM ++ W + YV NPC V + K K T ++ Q S Sbjct: 118 RGEQSKTQANHEKSSMSRVYSWGYERGYVKANPCAGVSKFKAKNRERYV-TDKEYQAVLS 176 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244 +A E R SD + + N+ I+ KTG Sbjct: 177 VAPL--PVFIAMEIAYLCAARVSDVLSLKWEQIGNDGIFIQQGKTGKKQIKAWSPRLQAA 234 Query: 245 LAMTP--IGKETFFINNDKQKMNATQFSIWFKAKATKAG------VNKSAHGVRKFSATI 296 + N + F+ + +AG + + H + K Sbjct: 235 IEKAKQLPTSAYVISNQYGNRYMYKGFNEMWVEARNRAGKISGILTDFTFHDL-KAKGIS 293 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGA 326 + ++ + G KT Q Y + Sbjct: 294 DYE--GSSRDKQLFSGHKTEGQVLIYDRKV 321 >gi|257898863|ref|ZP_05678516.1| phage integrase [Enterococcus faecium Com15] gi|293570233|ref|ZP_06681302.1| tyrosine recombinase XerD [Enterococcus faecium E980] gi|257836775|gb|EEV61849.1| phage integrase [Enterococcus faecium Com15] gi|291609640|gb|EFF38901.1| tyrosine recombinase XerD [Enterococcus faecium E980] Length = 295 Score = 150 bits (379), Expect = 3e-34, Method: Composition-based stats. Identities = 45/275 (16%), Positives = 103/275 (37%), Gaps = 26/275 (9%) Query: 75 ISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRK-------ITTKHIRSGVESR 126 I++Y + L+ N+R S+E +Q + + + + + E + Sbjct: 5 INDYLHYLNIERGLSANTRQSYERDLEQYLHFLEEQKVASWQDVDRFLVIRFLEKMHEEK 64 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 K T ++ + ++S+R ++ ++ +P ++ PK+ + T ++++ Sbjct: 65 KAT-ATVTRMISSLRRFHQFLRQERITDHDPMQHIDTPKKAQKLPSTLTLAEVEKLIEAP 123 Query: 187 S----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGF 241 G + R E + +G+R S+ + L ++ ++T K + L D Sbjct: 124 DTTKTLGIRDRAILEVMYATGMRVSELIGLKLGDLHLSLGLVQTVGKGDKERIIPLGDYA 183 Query: 242 MKLLAM----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289 ++ L + F+NN + ++ K +AG+ K + H + Sbjct: 184 IQWLERYLDEARPLLVKDASEMHVFVNNHGKGLSRQGIWKNLKQLVREAGIYKEVTPHTL 243 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 R AT + GA + G + + YT Sbjct: 244 RHSFATHLLENGADLRTVQELLGHADISTTQIYTH 278 >gi|190150873|ref|YP_001969398.1| tyrosine recombinase XerD [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|307264224|ref|ZP_07545815.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|189916004|gb|ACE62256.1| tyrosine recombinase XerD [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|306870470|gb|EFN02223.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 297 Score = 150 bits (379), Expect = 3e-34, Method: Composition-based stats. Identities = 45/284 (15%), Positives = 95/284 (33%), Gaps = 24/284 (8%) Query: 71 LKWLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGVES 125 L +I ++ + L+ N+ ++ + + G Sbjct: 4 LDPIIEQFLDTLWQEHGLSENTSAAYRLDLESFSEWLPTPKAFLTLDHFDLQAFLGGRLE 63 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----QQ 181 + +S+ + L+ +R F++ + Y +P L++ P++ + ++E + Sbjct: 64 LGYKATSSARMLSCLRKFFRFLYTENYRQDDPTLTLTSPRKPAHLPKSLSEEQVMDLLDS 123 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG 240 + + + E L +GLR S+ + +L ++ K V + + Sbjct: 124 PNTLDPIELRDKAMLELLYATGLRVSELVSLSIDNLSLRQGVVRVVGKGDKERLVPIGEE 183 Query: 241 FMKLLAMTPIGKETFFINN----------DKQKMNATQFSIWFKAKATKAGVN---KSAH 287 + +NN Q+M F K A AG++ S H Sbjct: 184 AGYWIQEFFQYGRAILLNNLQSDVVFPSRRGQQMTRQTFWHRIKHYAVLAGIDSEKLSPH 243 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 +R AT + GA + G + + YT A + RL Sbjct: 244 VLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVA-KARL 286 >gi|239827607|ref|YP_002950231.1| site-specific tyrosine recombinase XerD [Geobacillus sp. WCH70] gi|239807900|gb|ACS24965.1| tyrosine recombinase XerD [Geobacillus sp. WCH70] Length = 299 Score = 150 bits (379), Expect = 3e-34, Method: Composition-based stats. Identities = 43/266 (16%), Positives = 100/266 (37%), Gaps = 26/266 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDF-------DYRKITTKHIRSGVESRKHTPSSAIQFL 137 +LA N+ IS+E + D ++ ++ + ++P + + + Sbjct: 17 RNLAKNTIISYERDLKKYAHYLRHVEQIQSWNDVTRLHIMQFLKFLKEKGNSPKTIARHI 76 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF----KSFWSEGSQPR 193 S+R ++ +R++ +P + +E P+ + + + E+++ K+ G + + Sbjct: 77 ASIRSFHQFLLREKVAEQDPSVHIESPQMERTLPKVLSLEEVEALLEAPKTNTPIGVRDK 136 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-------------ITVELPDG 240 E L +G+R S+ + + + ++ G + V L Sbjct: 137 AMLELLYATGMRVSELVNLNLSDVHLTMGFVRCYGKGKKERIVPVGSMALNALKVYLETA 196 Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISA 298 KL+ + F+N+ +++ F K A +A + K + H +R AT Sbjct: 197 RPKLINSKKRTTDALFLNHHGERLTRQGFWKILKKLAKEANIEKELTPHTLRHSFATHLL 256 Query: 299 DAGATAHELMATYGWKTVDQAETYTK 324 + GA + G + + YT Sbjct: 257 ENGADLRAVQELLGHADISTTQIYTH 282 >gi|319789925|ref|YP_004151558.1| integrase family protein [Thermovibrio ammonificans HB-1] gi|317114427|gb|ADU96917.1| integrase family protein [Thermovibrio ammonificans HB-1] Length = 271 Score = 150 bits (379), Expect = 3e-34, Method: Composition-based stats. Identities = 48/250 (19%), Positives = 89/250 (35%), Gaps = 13/250 (5%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLF 144 L+ + + + + I+ GD D + T + +PS + ++++ F Sbjct: 16 KELSPRTVKEYRNDLNLFIKTVGDKDVSAVKTADLMLFRGRMGCSPSLINRRISALNTFF 75 Query: 145 KWAVRQEYVAINPCL-SVERPKRKTEGIRPWTKEDMQQ-FKSFWSEGSQPRLAFEFLLYS 202 + V E + NP S+ K K T E++++ ++ G + L F+ +LY Sbjct: 76 NFLVDMEIIDKNPVKPSLRIKKVKQRVPEALTPEEVEKVLEAARKRGERDYLMFKTILYC 135 Query: 203 GLRCSDSCRAGVQ---HLQNNIFSIKTQKTGTIITVELPDGFMKLL--AMTPIGKETFFI 257 GLR S+ + + K G + L F + L + E F Sbjct: 136 GLRISELLSLTKESIVEFKGRPVLKVIGKGGKERFIPLSRSFARELISYAERVEGEKLF- 194 Query: 258 NNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVD 317 ++ F + GV H +R AT+ D G + A G + + Sbjct: 195 -----PLSYQGAKYIFNRVRDETGVPIHPHKLRHTFATVLVDRGVDIRVIQAFLGHASPN 249 Query: 318 QAETYTKGAD 327 + Y K D Sbjct: 250 TSARYAKVRD 259 >gi|312110344|ref|YP_003988660.1| tyrosine recombinase XerD [Geobacillus sp. Y4.1MC1] gi|311215445|gb|ADP74049.1| tyrosine recombinase XerD [Geobacillus sp. Y4.1MC1] Length = 299 Score = 150 bits (378), Expect = 3e-34, Method: Composition-based stats. Identities = 41/266 (15%), Positives = 96/266 (36%), Gaps = 26/266 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDF-------DYRKITTKHIRSGVESRKHTPSSAIQFL 137 +LA N+ +S+E + D ++ ++ + +P + + + Sbjct: 17 RNLAKNTIVSYERDLKKYAHYLRHVEQIQSWNDVSRLHIMQFLKFLKEKGSSPKTIARHI 76 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF----KSFWSEGSQPR 193 S+R ++ +R++ +P + +E P+ + + + E+++ K+ G + + Sbjct: 77 ASIRSFHQFLLREKIADQDPSVHIESPQMERTLPKVLSLEEVEALLEAPKTNTPIGIRDK 136 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVEL----PDGFMKLLAMT 248 E L +G+R S+ + + + ++ K V + D L Sbjct: 137 AMIELLYATGMRVSELVNLNLSDVHLTMGFVRCYGKGNKERIVPIGSMALDALKAYLETA 196 Query: 249 --------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISA 298 + F+N+ ++ F K A +A + K + H +R AT Sbjct: 197 RPKLINPKKRATDALFLNHYGDRLTRQGFWKILKKLAKEANIEKELTPHTLRHSFATHLL 256 Query: 299 DAGATAHELMATYGWKTVDQAETYTK 324 + GA + G + + YT Sbjct: 257 ENGADLRAVQELLGHADISTTQIYTH 282 >gi|326791364|ref|YP_004309185.1| integrase family protein [Clostridium lentocellum DSM 5427] gi|326542128|gb|ADZ83987.1| integrase family protein [Clostridium lentocellum DSM 5427] Length = 296 Score = 150 bits (378), Expect = 3e-34, Method: Composition-based stats. Identities = 48/275 (17%), Positives = 104/275 (37%), Gaps = 27/275 (9%) Query: 75 ISEYRKSAHW-----GSLAVNSRISFES---YFDQIIRKSGDFDYRKITTKHIRSGVESR 126 + EY S + + N+ S+E YF++ + + G + + +T + I+ +E Sbjct: 1 MEEYITSFLYYLKHIKRASDNTVQSYERDLRYFERYVEEQGKIEIQSLTDQQIKVYLEHM 60 Query: 127 KH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM---- 179 K + ++ + L S+R ++ V+++ + NP + PK + + R ++E + Sbjct: 61 KDEEKSTATISRTLASIRAFCQYLVKEQVLNENPARLIALPKIEKKAPRILSQEQISSLL 120 Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD 239 +Q ++G + R E L +G+R S+ + I + T+ + Sbjct: 121 EQPNKKDTKGIRDRAMLELLYATGIRVSELISLKTTDINLQQGYIICRDAQKERTIPIGK 180 Query: 240 GF----------MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAH 287 ++ + + +T F+N + M F K A A + + H Sbjct: 181 SAISALNMYLGEVRHILIRSANDKTLFVNCNGYPMTRQGFWKILKTYANAAHIQGEITPH 240 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 +R A GA + G + + Y Sbjct: 241 MLRHSFAAHLVQNGANLKSVQQMLGHSDISTTQVY 275 >gi|307565005|ref|ZP_07627522.1| putative tyrosine recombinase XerD [Prevotella amnii CRIS 21A-A] gi|307346318|gb|EFN91638.1| putative tyrosine recombinase XerD [Prevotella amnii CRIS 21A-A] Length = 310 Score = 150 bits (378), Expect = 3e-34, Method: Composition-based stats. Identities = 45/262 (17%), Positives = 93/262 (35%), Gaps = 22/262 (8%) Query: 85 GSLAVNSRISFESYFDQII-----RKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139 + ++ ++ +++ K D R + + + S + L+ Sbjct: 23 KGYSEHTIDAYMRDIEKLSSFLEAEKIDVLDVRLEDLERFTACMSELGIGARSLSRVLSG 82 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRLA 195 +R +++ + Y+ I+P +E PK+ + ++ + EG + + Sbjct: 83 IRHFYRFLILDGYLEIDPTELLESPKQPKHLPEVLSTAEVDIILNSIDLTKWEGQRNKAI 142 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-IITVELPDGFMKLL--------- 245 E L GLR S+ + +L ++ G+ V + ++ L Sbjct: 143 IEVLFSCGLRVSELTSLKISNLYFQEQYVRIMGKGSKERLVPISPRAIEELNYWFLDRSQ 202 Query: 246 -AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302 + + F+N + T I K A AG+ K S H +R AT + GA Sbjct: 203 MKIKEGEDDYVFLNRRGSHLTRTMILIMLKRYAYAAGIKKTISPHTLRHSFATALLEGGA 262 Query: 303 TAHELMATYGWKTVDQAETYTK 324 + A G +++ E YT Sbjct: 263 DLRSIQAMLGHESIVTTELYTH 284 >gi|299538357|ref|ZP_07051640.1| tyrosine recombinase xerD [Lysinibacillus fusiformis ZC1] gi|298725944|gb|EFI66536.1| tyrosine recombinase xerD [Lysinibacillus fusiformis ZC1] Length = 300 Score = 150 bits (378), Expect = 3e-34, Method: Composition-based stats. Identities = 45/266 (16%), Positives = 98/266 (36%), Gaps = 27/266 (10%) Query: 85 GSLAVNSRISFESYFDQ----IIRKSGDFDYRKITT----KHIRSGVESRKHTPSSAIQF 136 L+VN+ S+ + + G D+ + +H+ K + + A + Sbjct: 19 RQLSVNTLASYRRDLESYVHFLKEAEGMSDFSVVERTTILRHLEQLRAQGKTSRTVA-RH 77 Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQP 192 ++S+R ++ +R++ +P + +E P + + + E+++ + +G + Sbjct: 78 ISSIRSFHQFLLREKRAETDPTVHLEMPTIEQKLPNILSIEEIEALLTAPNKSKPQGIRD 137 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIG 251 E L SG+R S+ + + + ++ K G + L + + G Sbjct: 138 LAMLELLYGSGMRISELIALDLADIHLTMGFVRVFGKGGKERIIPLGKSALSAINAYLNG 197 Query: 252 K-----------ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISA 298 + FFIN +++ K A KAG+ + H +R AT Sbjct: 198 ARGQLQGKYPKTDAFFINQRGKRLTRQGCWKLMKEHALKAGIQHELTPHTLRHSFATHLV 257 Query: 299 DAGATAHELMATYGWKTVDQAETYTK 324 + GA + G + + YT Sbjct: 258 ENGADLRAVQEMLGHADISTTQIYTH 283 >gi|194435415|ref|ZP_03067602.1| site-specific recombinase, phage integrase family [Shigella dysenteriae 1012] gi|194416345|gb|EDX32527.1| site-specific recombinase, phage integrase family [Shigella dysenteriae 1012] Length = 341 Score = 150 bits (378), Expect = 3e-34, Method: Composition-based stats. Identities = 61/330 (18%), Positives = 108/330 (32%), Gaps = 29/330 (8%) Query: 6 RLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65 +LPP V + Y K R ES + A L K E + R Sbjct: 12 KLPPNVYPNK------YSYVWKPTSR--------ESVTLTAIKDGLAALWKKYEETVNNR 57 Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125 + T L ++ SA++ L+ ++ + + +++ G I +HIR ++ Sbjct: 58 DRAMTFGRLWEKFLASAYYSDLSPRTQKDYLQHQKKLLAVFGKVPADSIKPEHIRRYMDK 117 Query: 126 RKH-TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 R + + A +SM ++ W + YV NPC V + K K T ++ Q S Sbjct: 118 RGEQSKTQANHEKSSMSRVYSWGYERGYVKANPCAGVSKFKAKNRERYV-TDKEYQAVLS 176 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244 +A E R SD + + N+ I+ KTG Sbjct: 177 VAPL--PVFIAMEIAYLCAARVSDVLSLKWEQIGNDGIFIQQGKTGKKQIKAWSPRLQAA 234 Query: 245 LAMTP--IGKETFFINNDKQKMNATQFSIWFKAKATKAG------VNKSAHGVRKFSATI 296 + N + F+ + +AG + + H + K Sbjct: 235 IEKAKQLPTSAYVISNQYGNRYMYKGFNEMWVEARNRAGKISGILTDFTFHDL-KAKGIS 293 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGA 326 + ++ + G KT Q Y + Sbjct: 294 DYE--GSSRDKQLFSGHKTEGQVLIYDRKV 321 >gi|167763873|ref|ZP_02436000.1| hypothetical protein BACSTE_02254 [Bacteroides stercoris ATCC 43183] gi|167697989|gb|EDS14568.1| hypothetical protein BACSTE_02254 [Bacteroides stercoris ATCC 43183] Length = 316 Score = 150 bits (378), Expect = 3e-34, Method: Composition-based stats. Identities = 58/281 (20%), Positives = 103/281 (36%), Gaps = 24/281 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQII-----RKSGDFDYRKITTKHIRSGVESRK 127 +I +Y++ +L+ N+ ++ + +++ D + +G+ Sbjct: 16 IIRKYQQYLKLEKALSPNTLDAYMTDLQKLLHFLEGENIEIPDVTPDDLQRFAAGLHDIG 75 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 P S + L+ ++ F + V +Y +P +E PK T E++ + S Sbjct: 76 IHPRSQARILSGIKSFFHFLVIADYQEADPSELLEGPKIGFRLPEVLTVEEIDRIISTVD 135 Query: 188 ----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-KTGTIITVELPDGFM 242 EG + R E L GLR S+ C + L IK + K G V + + Sbjct: 136 MEKKEGQRNRAILETLYSCGLRVSELCNLKISDLYFEEGFIKVEGKGGKQRLVPISPRAI 195 Query: 243 KLLAMTPIGK----------ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290 K + + + F+ ++ K A KAG+ K S H R Sbjct: 196 KEIKYWFADRNLGKIKKGYEDYVFLARWGNNISRIMVFHMIKELAEKAGITKNISPHTFR 255 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 AT + GA + G +++ E YT DR RL Sbjct: 256 HSFATHLLEGGANLRAIQCMLGHESIATTEIYTH-IDRNRL 295 >gi|194430644|ref|ZP_03063091.1| site-specific recombinase, phage integrase family [Escherichia coli B171] gi|194411310|gb|EDX27685.1| site-specific recombinase, phage integrase family [Escherichia coli B171] Length = 341 Score = 150 bits (378), Expect = 4e-34, Method: Composition-based stats. Identities = 61/330 (18%), Positives = 108/330 (32%), Gaps = 29/330 (8%) Query: 6 RLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65 +LPP V + Y K R ES + A L K E + R Sbjct: 12 KLPPNVYPNK------YSYVWKPTSR--------ESVTLTAIKDGLAALWKKYEETVNNR 57 Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125 + T L ++ SA++ L+ ++ + + +++ G I +HIR ++ Sbjct: 58 DRAMTFGRLWEKFLASAYYSDLSPRTQKDYLQHQKKLLAVFGKVPADSIKPEHIRRYMDK 117 Query: 126 RKH-TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 R + + A +SM ++ W + YV NPC V + K K T ++ Q S Sbjct: 118 RGEQSKTQANHEKSSMSRVYSWGYERGYVKGNPCAGVSKFKAKNRERYV-TDKEYQAVLS 176 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244 +A E R SD + + N+ I+ KTG Sbjct: 177 VAPL--PVFIAMEIAYLCAARVSDVLSLKWEQIGNDGIFIQQGKTGKKQIKAWSPRLQAA 234 Query: 245 LAMTP--IGKETFFINNDKQKMNATQFSIWFKAKATKAG------VNKSAHGVRKFSATI 296 + N + F+ + +AG + + H + K Sbjct: 235 IEKAKQLPTSAYVISNQYGNRYMYKGFNEMWVEARNRAGKISGILTDFTFHDL-KAKGIS 293 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGA 326 + ++ + G KT Q Y + Sbjct: 294 DYE--GSSRDKQLFSGHKTEGQVLIYDRKV 321 >gi|301299326|ref|ZP_07205611.1| tyrosine recombinase XerD [Lactobacillus salivarius ACS-116-V-Col5a] gi|300853066|gb|EFK80665.1| tyrosine recombinase XerD [Lactobacillus salivarius ACS-116-V-Col5a] Length = 290 Score = 150 bits (378), Expect = 4e-34, Method: Composition-based stats. Identities = 50/269 (18%), Positives = 113/269 (42%), Gaps = 25/269 (9%) Query: 85 GSLAVNSRISFE---SYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI----QFL 137 L+ N+ S+ F + +R++ ++++ + I + ++S K+ + A + + Sbjct: 11 RGLSENTINSYGIDLKLFLEYLRENEIPSFKQVNKEVIVNYMQSEKNN-NKANSSILRSV 69 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPR 193 +S+R F++ +++ + +P L ++ PK+K + TKE++++ + G + R Sbjct: 70 SSLRKFFQYLAQEKIIEKDPMLLIDTPKKKQHLPQVLTKEEVEKLLRSPNTGQVLGLRDR 129 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAM----- 247 E + +GLR S+ ++ L + +++T K V + D +K + Sbjct: 130 AMLELMYATGLRISEIINLKLEDLHLTMGTLQTLGKGHKERIVPVGDEAIKWVNRYLEEA 189 Query: 248 -----TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300 F+N + KA+ KAG+ K + H +R AT + Sbjct: 190 RPKLLKQKRSNYLFLNFHGNNLTRQGVWKNLKAEVRKAGIQKNITPHTLRHSFATHILEN 249 Query: 301 GATAHELMATYGWKTVDQAETYTKGADRI 329 GA + G + + YT +++ Sbjct: 250 GADLRIVQELLGHADISTTQIYTHLSNKQ 278 >gi|313202049|ref|YP_004040707.1| tyrosine recombinase xerd [Methylovorus sp. MP688] gi|312441365|gb|ADQ85471.1| tyrosine recombinase XerD [Methylovorus sp. MP688] Length = 298 Score = 150 bits (378), Expect = 4e-34, Method: Composition-based stats. Identities = 48/268 (17%), Positives = 93/268 (34%), Gaps = 23/268 (8%) Query: 86 SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK-----HTPSSAIQFLTSM 140 LA N+ S+ + + + P S + + S+ Sbjct: 21 GLARNTLESYRRDLALFAEWLWSEHAKLLNQADQGDLQQYLAFRFPTSKPRSVSRLIASL 80 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRLAF 196 R +++ +R+ ++++P L ++ PK + ++++ + G + R Sbjct: 81 RRFYRYGLREGQISVDPTLLIDTPKLPRSLPKSLNEDEVVALLNAPDIAQAIGLRDRAML 140 Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT-VELPDGFMKLLAMTPIGK--- 252 E L GLR S+ + N ++ G+ V L + + L Sbjct: 141 ETLYACGLRVSELVGLRYTEVSLNEGVVRVTGKGSKTRLVPLGEESVDWLLRYAREGRPQ 200 Query: 253 -------ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGAT 303 ++ F+ + M F K A +AG++K S H +R AT + GA Sbjct: 201 ILQQRVSDSLFVTQRGEAMTRQAFWYLIKRYALQAGIHKPLSPHVLRHAFATHLLNHGAD 260 Query: 304 AHELMATYGWKTVDQAETYTKGADRIRL 331 + G + + YT A R RL Sbjct: 261 LRVVQMLLGHSDISTTQIYTHVA-RERL 287 >gi|299771869|ref|YP_003733895.1| site-specific tyrosine recombinase [Acinetobacter sp. DR1] gi|298701957|gb|ADI92522.1| site-specific tyrosine recombinase [Acinetobacter sp. DR1] Length = 306 Score = 150 bits (378), Expect = 4e-34, Method: Composition-based stats. Identities = 54/292 (18%), Positives = 102/292 (34%), Gaps = 20/292 (6%) Query: 57 KREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITT 116 K+ I SP + P L +L +R +++ ++R ++ S Q + T+ Sbjct: 4 KKPRIPSPVQIPEHLSFL-QGFRDYLVAQTVSPHTRNAYLSDLIQCSELHQKTALPQWTS 62 Query: 117 KHIRS---GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173 I + +P S + L+++R +K+ Q+ + NP + PK + Sbjct: 63 DDIADVLIELTKAGKSPRSIARCLSALRQFYKFLREQKLRSDNPVATHHSPKIGRALPKD 122 Query: 174 WTKEDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229 ++ED++ G + R FE L GLR S+ ++ + ++ Sbjct: 123 LSEEDVEALIQAPDINTALGLRDRAMFEVLYACGLRVSELLNLRLELINLKQGYLRVTGK 182 Query: 230 G-TIITVELPDGFMKLLAMT---------PIGKETFFINNDKQKMNATQFSIWFKAKATK 279 G V L + + + F+ M+ F K A + Sbjct: 183 GNKERLVPLGQFACEWVERYLHNARPQLYKSSTDYLFLTQHGGIMSRQNFWYAIKRYALQ 242 Query: 280 AGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 A + S H +R AT + GA + G + + YT A Sbjct: 243 ANIQAELSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQVR 294 >gi|289435303|ref|YP_003465175.1| integrase/recombinase XerD [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289171547|emb|CBH28093.1| integrase/recombinase XerD [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 297 Score = 150 bits (378), Expect = 4e-34, Method: Composition-based stats. Identities = 48/288 (16%), Positives = 102/288 (35%), Gaps = 33/288 (11%) Query: 73 WLISEYRKSAHW----GSLAVNSRISFESYFDQIIRKSGDF----DYRKITTKHIRSGVE 124 LI ++ H+ L+ N+ ++E + D + I + Sbjct: 3 DLIDDFL---HFLIVEKGLSANTIKAYERDLHYFVSYINTARPLTDPNTLERSDIVGFMA 59 Query: 125 ---SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 + S +++ S+R F + + ++ +P + +E PK+ + +D++ Sbjct: 60 FARKEGKSARSVARYIASLRSFFHYLMHDGKMSHDPMIQIETPKQAQGLPKVLNLDDVEL 119 Query: 182 FK----SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE 236 + G + + E L +GLR ++ + + L + I+T K + Sbjct: 120 LLSSSDTSTPLGLRDQAMMEILYATGLRVTELVQLKMDDLHLQMGFIQTIGKGDKERIIP 179 Query: 237 L-----------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284 L + L + F+N+ Q + F K A ++G+ K Sbjct: 180 LGKTATTVLEQYLEEARPKLRRPKYRNDFVFLNHHGQGLTRQGFWKILKGIAKESGIEKP 239 Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 + H +R AT + GA + G + + YT ++RL Sbjct: 240 ITPHTLRHSFATHLLENGADLRSVQELLGHADISTTQIYTH-VTKLRL 286 >gi|254468110|ref|ZP_05081516.1| tyrosine recombinase XerD [beta proteobacterium KB13] gi|207086920|gb|EDZ64203.1| tyrosine recombinase XerD [beta proteobacterium KB13] Length = 298 Score = 150 bits (378), Expect = 4e-34, Method: Composition-based stats. Identities = 53/271 (19%), Positives = 96/271 (35%), Gaps = 20/271 (7%) Query: 86 SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPSSAIQFLTSMRVL 143 L+ N+ S+ Q+ + D IT I+ + R S + L +R Sbjct: 24 GLSKNTLDSYRYDLKQLAIWYSNRDIAHITKSEIQEYLAYRFPLSKSRSIARLLACLRRF 83 Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAFEFL 199 +++ VR+ + +P L +E PK + + ++++ + +G + R E L Sbjct: 84 YRYLVRENIIHEDPTLMIEAPKPSKALPKSLNENEVEKLLNAPNISDDQGLRDRAMLELL 143 Query: 200 LYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLA----------MT 248 GLR S+ V + N I+ T K V + + + + Sbjct: 144 YACGLRVSELITIMVTEVSLNDGVIRITGKGDKTRLVPMGEEASHWIEQYLKSSRDNLLK 203 Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHE 306 + F+ M F K A +G+ S H +R AT + GA Sbjct: 204 EKKSKYLFVTLRGAAMTRQAFWYLIKRYAVASGIKHAISPHVLRHAFATHLLNHGADLRV 263 Query: 307 LMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 + G + + YT A R RL + + Sbjct: 264 VQMLLGHSDISTTQIYTHVA-RERLKDLHQK 293 >gi|307250820|ref|ZP_07532749.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306857179|gb|EFM89306.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar 4 str. M62] Length = 297 Score = 149 bits (377), Expect = 4e-34, Method: Composition-based stats. Identities = 44/284 (15%), Positives = 94/284 (33%), Gaps = 24/284 (8%) Query: 71 LKWLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGVES 125 L +I ++ + L+ N+ ++ + + Sbjct: 4 LDPIIEQFLDTLWQEHGLSENTSAAYRLDLESFSEWLPTPKAFLTLDHFDLQAFLGERLE 63 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----QQ 181 + +S+ + L+ +R F++ + Y +P L++ P++ + ++E + Sbjct: 64 LGYKATSSARMLSCLRKFFRFLYTENYRQDDPTLTLTSPRKPAHLPKSLSEEQVMDLLDS 123 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG 240 + + + E L +GLR S+ + +L ++ K V + + Sbjct: 124 PNTLDPIELRDKAMLELLYATGLRVSELVSLSIDNLSLRQGVVRVVGKGDKERLVPIGEE 183 Query: 241 FMKLLAMTPIGKETFFINN----------DKQKMNATQFSIWFKAKATKAGVN---KSAH 287 + +NN Q+M F K A AG++ S H Sbjct: 184 AGYWIQEFFRYGRAILLNNLQSDVVFPSRRGQQMTRQTFWHRIKHYAVLAGIDSEKLSPH 243 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 +R AT + GA + G + + YT A + RL Sbjct: 244 VLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVA-KARL 286 >gi|165976973|ref|YP_001652566.1| site-specific tyrosine recombinase XerD [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|303250986|ref|ZP_07337174.1| site-specific tyrosine recombinase XerD [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307253199|ref|ZP_07535075.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|165877074|gb|ABY70122.1| integrase/recombinase XerD [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|302650143|gb|EFL80311.1| site-specific tyrosine recombinase XerD [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306859343|gb|EFM91380.1| Tyrosine recombinase xerD [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 297 Score = 149 bits (377), Expect = 4e-34, Method: Composition-based stats. Identities = 44/284 (15%), Positives = 95/284 (33%), Gaps = 24/284 (8%) Query: 71 LKWLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGVES 125 L +I ++ + L+ N+ +++ + + Sbjct: 4 LDPIIEQFLDTLWQEHGLSENTSVAYRLDLESFSEWLPTPKAFLTLDHFDLQAFLGERLE 63 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----QQ 181 + +S+ + L+ +R F++ + Y +P L++ P++ + ++E + Sbjct: 64 LGYKATSSARMLSCLRKFFRFLYTENYRQDDPTLTLTSPRKPAHLPKSLSEEQVMDLLDS 123 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG 240 + + + E L +GLR S+ + +L ++ K V + + Sbjct: 124 PNTLDPVELRDKAMLELLYATGLRVSELVSLSIDNLSLRQGVVRVVGKGDKERLVPIGEE 183 Query: 241 FMKLLAMTPIGKETFFINN----------DKQKMNATQFSIWFKAKATKAGVN---KSAH 287 + +NN Q+M F K A AG++ S H Sbjct: 184 AGYWIQEFFRYGRAILLNNLQSDVVFPSRRGQQMTRQTFWHRIKHYAVLAGIDSEKLSPH 243 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 +R AT + GA + G + + YT A + RL Sbjct: 244 VLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVA-KARL 286 >gi|259046879|ref|ZP_05737280.1| integrase/recombinase XerD [Granulicatella adiacens ATCC 49175] gi|259036502|gb|EEW37757.1| integrase/recombinase XerD [Granulicatella adiacens ATCC 49175] Length = 294 Score = 149 bits (377), Expect = 4e-34, Method: Composition-based stats. Identities = 39/279 (13%), Positives = 94/279 (33%), Gaps = 24/279 (8%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH------IRSGVESRKH 128 I + S L+ N+ S+ ++ + + ++ ++ ++ Sbjct: 4 IHYFLDSIAVQGLSDNTVSSYRRDLEKFSQFLEEQKVIRLQNVDHTTMVLFLQKLKKDEY 63 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS- 187 SS + ++ ++ F++ +++ + +P + PK K + + + +++ + Sbjct: 64 AVSSTSRMISCLKKFFQFLIQERIIDKDPTQQIHPPKPKKQLPKALSIDEVNRLLEVPDT 123 Query: 188 ---EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVEL------ 237 G + + E L +G+R S+ + L + ++T K + + Sbjct: 124 TTVLGLRDKAMLELLYATGMRVSELISIELGDLHLELGFLQTIGKGNKQRIIPIGQEATN 183 Query: 238 -----PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290 + L F+N+ F K A + K S H +R Sbjct: 184 WIQNYLEYARPALEDEKKLSNVLFLNHRGGPFTRQGFWKNLKKIVQTAMITKEVSPHTLR 243 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 AT +AGA + G + + YT + Sbjct: 244 HSFATHILEAGADLRIVQELLGHSDISTTQIYTHITNER 282 >gi|323340732|ref|ZP_08080984.1| integrase/recombinase XerD [Lactobacillus ruminis ATCC 25644] gi|323091855|gb|EFZ34475.1| integrase/recombinase XerD [Lactobacillus ruminis ATCC 25644] Length = 300 Score = 149 bits (377), Expect = 4e-34, Method: Composition-based stats. Identities = 52/286 (18%), Positives = 107/286 (37%), Gaps = 25/286 (8%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH------IRSGV 123 L+ ++++Y L+ N+ S+ Q I + + + Sbjct: 6 LQRILNDYLHYLKAERGLSENTVSSYGLDLQQFINYLSEHKITDLNDVDKQVIVDYLDYL 65 Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 ++ +S I+ +TS+R F+ + E + +P +S+E PK + + E+++ Sbjct: 66 MNKGKANASIIRCVTSLRKFFQSMKQDEKIQDDPMISIETPKGEKHLPEVLSIEEVEMLL 125 Query: 184 SFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELP 238 + G + R E + +GLR S+ ++ L ++ I+T G V + Sbjct: 126 NAPDTSQTLGIRNRAILELMYATGLRVSEVVNLKLEDLHLDVGIIQTMGKGRKERIVPIG 185 Query: 239 DGFMKLL-----AMTP-----IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SA 286 D + + P F+N +++ K + KAG++K + Sbjct: 186 DEAIVWINNYLNDARPELCKNKRSPFLFVNFHGERLTRQGIWKNLKNEVKKAGISKNVTP 245 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 H +R AT + GA + G + + YT + RL Sbjct: 246 HTLRHSFATHILENGADLRIVQELLGHSDISTTQIYTH-ISKKRLS 290 >gi|262280674|ref|ZP_06058457.1| tyrosine recombinase XerD [Acinetobacter calcoaceticus RUH2202] gi|262257574|gb|EEY76309.1| tyrosine recombinase XerD [Acinetobacter calcoaceticus RUH2202] Length = 306 Score = 149 bits (377), Expect = 5e-34, Method: Composition-based stats. Identities = 53/292 (18%), Positives = 105/292 (35%), Gaps = 20/292 (6%) Query: 57 KREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF---DQIIRKSGDFDYRK 113 K+ I SP + P L +L +R +++ ++R ++ S ++ +K+ + Sbjct: 4 KKPRIPSPVQIPEHLSFL-QGFRDYLVAQTVSPHTRNAYLSDLIQCSELHKKNALPQWSS 62 Query: 114 ITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173 + + +P S + L+++R +K+ Q+ + NP + PK + Sbjct: 63 DDIADVLIELTKAGKSPRSIARCLSTLRQFYKFLREQKLRSDNPVATHHSPKIGRALPKD 122 Query: 174 WTKEDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQK 228 ++ED++ G + R FE L GLR S+ ++ + ++ T K Sbjct: 123 LSEEDVESLIQAPDINTALGLRDRAMFEVLYACGLRVSELLNLRLELINLKQGYLRVTGK 182 Query: 229 TGTIITVELPDGFMKLLAMT---------PIGKETFFINNDKQKMNATQFSIWFKAKATK 279 V L + + + F+ M+ F K A + Sbjct: 183 GNKERLVPLGQFACEWVERYLNNARPQLYKSSTDYLFLTQHGGIMSRQNFWYAIKRYALQ 242 Query: 280 AGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 A + S H +R AT + GA + G + + YT A Sbjct: 243 ANIQAELSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQVR 294 >gi|313204480|ref|YP_004043137.1| tyrosine recombinase xerd subunit [Paludibacter propionicigenes WB4] gi|312443796|gb|ADQ80152.1| tyrosine recombinase XerD subunit [Paludibacter propionicigenes WB4] Length = 302 Score = 149 bits (377), Expect = 5e-34, Method: Composition-based stats. Identities = 46/262 (17%), Positives = 91/262 (34%), Gaps = 22/262 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITT-----KHIRSGVESRKHTPSSAIQFLTS 139 +L+ N+ ++E ++ + + + + S P S + L+S Sbjct: 16 KALSANTIDAYERDLQKLTVYLSEAHVKPEEATTEILRDFIIEISSLGIHPRSQARILSS 75 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ----QFKSFWSEGSQPRLA 195 ++ + + + ++ + +P +E PK + ++ EG + + Sbjct: 76 IKSFYHFLIYKDVIDNDPTELLESPKTGLRLPEVLSLNEIDDIVSAIDLSKPEGQRNKAI 135 Query: 196 FEFLLYSGLRCSDSCRAGVQ-HLQNNIFSIKTQKTGTIITVELPDGFMK----------L 244 E L SGLR S+ + + + + K V + MK L Sbjct: 136 IEVLYGSGLRVSELIGLQLSKMYMDEGYMLVEGKGSKQRLVPMSPQAMKQIELWKTDRNL 195 Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302 L + ++ F+N K+ K A AG+ K S H R AT + GA Sbjct: 196 LDIKKGNEDCLFLNRRGSKLTRDMIFKIVKELALLAGIRKNVSPHTFRHSFATHLLENGA 255 Query: 303 TAHELMATYGWKTVDQAETYTK 324 + G +++ E YT Sbjct: 256 NLRAIQQLLGHESITTTEIYTH 277 >gi|295399051|ref|ZP_06809033.1| tyrosine recombinase XerD [Geobacillus thermoglucosidasius C56-YS93] gi|294978517|gb|EFG54113.1| tyrosine recombinase XerD [Geobacillus thermoglucosidasius C56-YS93] Length = 299 Score = 149 bits (377), Expect = 5e-34, Method: Composition-based stats. Identities = 41/266 (15%), Positives = 97/266 (36%), Gaps = 26/266 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDF-------DYRKITTKHIRSGVESRKHTPSSAIQFL 137 +LA N+ +S+E + D ++ ++ + +P + + + Sbjct: 17 RNLAKNTIVSYERDLKKYAHYLRHVEQIQSWNDVSRLHIMQFLKFLKEKGSSPKTIARHI 76 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF----KSFWSEGSQPR 193 S+R ++ +R++ +P + +E P+ + + + E+++ K+ G + + Sbjct: 77 ASIRSFHQFLLREKIADQDPSVHIESPQMERTLPKVLSLEEVEALLEAPKTNTPIGIRDK 136 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-------------ELPDG 240 E L +G+R S+ + + + ++ G + L Sbjct: 137 AMIELLYATGMRVSELVNLNLSDVHLTMGFVRCYGKGNKERIVPVGSMALDALKAYLETA 196 Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISA 298 KL+ + F+N+ ++ F K A +A + K + H +R AT Sbjct: 197 RPKLINPKKRTTDALFLNHYGDRLTRQGFWKILKKLAKEANIEKELTPHTLRHSFATHLL 256 Query: 299 DAGATAHELMATYGWKTVDQAETYTK 324 + GA + G + + YT Sbjct: 257 ENGADLRAVQELLGHADISTTQIYTH 282 >gi|294139500|ref|YP_003555478.1| integrase/recombinase XerD [Shewanella violacea DSS12] gi|293325969|dbj|BAJ00700.1| integrase/recombinase XerD [Shewanella violacea DSS12] Length = 305 Score = 149 bits (377), Expect = 5e-34, Method: Composition-based stats. Identities = 53/276 (19%), Positives = 108/276 (39%), Gaps = 25/276 (9%) Query: 85 GSLAVNSRISFE---SYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT---PSSAIQFLT 138 L+ N+ ++ +FD+ I++ G + +++ + IR ++ R +S+ + ++ Sbjct: 27 RGLSDNTLAAYRTDLRHFDRYIQELG-AELVQVSQELIRGYLDVRFDKGFARTSSARMMS 85 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRL 194 S+R F + + ++ + +P ++ PK + ++ D+ + + R Sbjct: 86 SLRRFFGFLLLKKMITADPIARIKSPKLARKLPDSLSEADVDILLNEPDIQDPIECRDRA 145 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG--------FMKLL 245 E L +GLR ++ ++ L ++ K G V L + Sbjct: 146 MLELLYATGLRVTELVSLTMEQLSLRQGLVRVVGKGGKERLVPLGELAVSEVENYLQGAR 205 Query: 246 AMTPIGK--ETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAG 301 A GK + F + Q M F K A +AG+ + S H +R AT + G Sbjct: 206 AELLKGKLSDVLFPSKRGQMMARQTFWYRIKLYALRAGIVTHISPHTLRHAFATHLLNHG 265 Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 A + G + + YT A + RL +S Sbjct: 266 ADLRVVQLLLGHSDLSTTQIYTHVA-KARLSQLHSE 300 >gi|315282996|ref|ZP_07871279.1| tyrosine recombinase XerD [Listeria marthii FSL S4-120] gi|313613367|gb|EFR87228.1| tyrosine recombinase XerD [Listeria marthii FSL S4-120] Length = 297 Score = 149 bits (377), Expect = 5e-34, Method: Composition-based stats. Identities = 48/288 (16%), Positives = 104/288 (36%), Gaps = 33/288 (11%) Query: 73 WLISEYRKSAHW----GSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGVE 124 LI ++ H+ L+ N+ +++ + D + I + Sbjct: 3 DLIEDFL---HFLIVERGLSANTIKAYQRDLHYFVSYMETSKNLTDPNILERSDIVGFMA 59 Query: 125 ---SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 + S +++ S+R F + + ++ +P + +E PK+ + +D+++ Sbjct: 60 FARQEGKSARSVARYIASLRSFFHYLMHDGKMSHDPMIQIETPKQAQSLPKVLNLDDVEK 119 Query: 182 FK----SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE 236 + G + + E L +GLR ++ R + L ++ I+T K + Sbjct: 120 LLSSSDTSTPLGLRDQAMMEILYATGLRVTELVRLKMDDLHLHMGFIQTIGKGDKERIIP 179 Query: 237 L-----------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284 L + L + F+N+ Q + F K A ++G+ K Sbjct: 180 LGKTATTVLEQYLEEARPKLRRPKYRNDFVFLNHHGQGLTRQGFWKILKGIAKESGIEKP 239 Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 + H +R AT + GA + G + + YT ++RL Sbjct: 240 ITPHTLRHSFATHLLENGADLRSVQELLGHADISTTQIYTH-VTKLRL 286 >gi|295677507|ref|YP_003606031.1| tyrosine recombinase XerD [Burkholderia sp. CCGE1002] gi|295437350|gb|ADG16520.1| tyrosine recombinase XerD [Burkholderia sp. CCGE1002] Length = 316 Score = 149 bits (376), Expect = 6e-34, Method: Composition-based stats. Identities = 51/284 (17%), Positives = 89/284 (31%), Gaps = 25/284 (8%) Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG----VE 124 ++ L+ N+ ++ + T Sbjct: 26 ASIDAFCDALWLE---HGLSRNTLDAYRRDLRLFCEWLAHTRNASLDTASEADLSAYSAA 82 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 +K +SA + L+ R + WAVR+ A +P L + K+ ++ ++ Sbjct: 83 RQKDKATSANRRLSVFRRYYAWAVREHRAAADPTLRLRSAKQPPRFPSTLSEAQVEALLG 142 Query: 185 F----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPD 239 G + R E + SGLR ++ + N ++ T K V + Sbjct: 143 APDIDTPLGLRDRTMLELMYASGLRVTELVTLKTVEVGLNEGVVRVTGKGSKERLVPFGE 202 Query: 240 GFMKLLAM----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAH 287 + P + F+ + M QF K A AGV+ S H Sbjct: 203 EAHAWIERYLREARPALLGPRAADALFVTARAEGMTRQQFWNIIKRHAQAAGVHAPLSPH 262 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 +R AT + GA + G + + YT A R RL Sbjct: 263 TLRHAFATHLLNHGADLRVVQLLLGHTDISTTQIYTHVA-RERL 305 >gi|257887731|ref|ZP_05667384.1| phage integrase [Enterococcus faecium 1,141,733] gi|257896226|ref|ZP_05675879.1| phage integrase [Enterococcus faecium Com12] gi|293379533|ref|ZP_06625675.1| tyrosine recombinase XerD [Enterococcus faecium PC4.1] gi|257823785|gb|EEV50717.1| phage integrase [Enterococcus faecium 1,141,733] gi|257832791|gb|EEV59212.1| phage integrase [Enterococcus faecium Com12] gi|292641842|gb|EFF60010.1| tyrosine recombinase XerD [Enterococcus faecium PC4.1] Length = 295 Score = 149 bits (376), Expect = 6e-34, Method: Composition-based stats. Identities = 45/275 (16%), Positives = 103/275 (37%), Gaps = 26/275 (9%) Query: 75 ISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRK-------ITTKHIRSGVESR 126 I++Y + L+ N+R S+E +Q + + + + + E + Sbjct: 5 INDYLHYLNIERGLSANTRQSYERDLEQYLHFLEEQKVASWQDVDRFLVIRFLEKLHEEK 64 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 K T ++ + ++S+R ++ ++ +P ++ PK+ + T ++++ Sbjct: 65 KAT-ATVTRMISSLRRFHQFLRQERVTDHDPMQHIDTPKKAQKLPSTLTLAEVEKLIEAP 123 Query: 187 S----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGF 241 G + R E + +G+R S+ + L ++ ++T K + L D Sbjct: 124 DTTKTLGIRDRAILEVMYATGMRVSELIGLKLGDLHLSLGLVQTVGKGDKERIIPLGDYA 183 Query: 242 MKLLAM----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289 ++ L + F+NN + ++ K +AG+ K + H + Sbjct: 184 IQWLERYLDEARPLLVKDASEMHVFVNNHGKGLSRQGIWKNLKQLVREAGIYKEVTPHTL 243 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 R AT + GA + G + + YT Sbjct: 244 RHSFATHLLENGADLRTVQELLGHADISTTQIYTH 278 >gi|88860260|ref|ZP_01134898.1| site-specific tyrosine recombinase XerD [Pseudoalteromonas tunicata D2] gi|88817458|gb|EAR27275.1| site-specific tyrosine recombinase XerD [Pseudoalteromonas tunicata D2] Length = 301 Score = 149 bits (376), Expect = 6e-34, Method: Composition-based stats. Identities = 37/264 (14%), Positives = 91/264 (34%), Gaps = 19/264 (7%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH---TPSSAIQFLTSMR 141 ++ N+ ++ + + ++ + ++ + R P S + +++++ Sbjct: 26 QGVSENTLAAYRTDLTKFAEFILPKGLIEVEQQDVQYYLAHRLDNGFKPRSTARTVSALK 85 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAFE 197 +++ +R++ ++ NP + +PK + ++E++ + G + + E Sbjct: 86 RFYQYYLREKQLSTNPMTHIGQPKAGQSLPKTLSEEEVGRLLDAPDLEEPIGLRDKAMLE 145 Query: 198 FLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLLAM--------- 247 L +GLR S+ ++ + K V + + + + Sbjct: 146 LLYATGLRVSELVGLRIEQINLRQAVVFVKGKGNKERLVPMGEEALDCIERFIKEGRPQL 205 Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAH 305 + F + M F K A AG+ S H +R AT + GA Sbjct: 206 IKHATDFVFPSKRGIGMTRQTFWHRIKHYALVAGIESELSPHTLRHAFATHLINHGADLR 265 Query: 306 ELMATYGWKTVDQAETYTKGADRI 329 + G + + YT A Sbjct: 266 VVQMMLGHSDLSTTQIYTHVAKER 289 >gi|227551150|ref|ZP_03981199.1| site-specific DNA tyrosine recombinase [Enterococcus faecium TX1330] gi|227179712|gb|EEI60684.1| site-specific DNA tyrosine recombinase [Enterococcus faecium TX1330] Length = 300 Score = 149 bits (376), Expect = 6e-34, Method: Composition-based stats. Identities = 45/275 (16%), Positives = 103/275 (37%), Gaps = 26/275 (9%) Query: 75 ISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRK-------ITTKHIRSGVESR 126 I++Y + L+ N+R S+E +Q + + + + + E + Sbjct: 10 INDYLHYLNIERGLSANTRQSYERDLEQYLHFLEEQKVASWQDVDRFLVIRFLEKLHEEK 69 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 K T ++ + ++S+R ++ ++ +P ++ PK+ + T ++++ Sbjct: 70 KAT-ATVTRMISSLRRFHQFLRQERVTDHDPMQHIDTPKKAQKLPSTLTLAEVEKLIEAP 128 Query: 187 S----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGF 241 G + R E + +G+R S+ + L ++ ++T K + L D Sbjct: 129 DTTKTLGIRDRAILEVMYATGMRVSELIGLKLGDLHLSLGLVQTVGKGDKERIIPLGDYA 188 Query: 242 MKLLAM----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289 ++ L + F+NN + ++ K +AG+ K + H + Sbjct: 189 IQWLERYLDEARPLLVKDASEMHVFVNNHGKGLSRQGIWKNLKQLVREAGIYKEVTPHTL 248 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 R AT + GA + G + + YT Sbjct: 249 RHSFATHLLENGADLRTVQELLGHADISTTQIYTH 283 >gi|313672931|ref|YP_004051042.1| integrase family protein [Calditerrivibrio nitroreducens DSM 19672] gi|312939687|gb|ADR18879.1| integrase family protein [Calditerrivibrio nitroreducens DSM 19672] Length = 297 Score = 149 bits (376), Expect = 6e-34, Method: Composition-based stats. Identities = 43/274 (15%), Positives = 98/274 (35%), Gaps = 18/274 (6%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132 L+ ++ + SL+ NS +++ ++ R + D++ S + + + S Sbjct: 7 LVKRFQHYMKYDLSLSENSIEAYKRDLMELTRFTKDYNLTPSDLVSYMSHLRKKGLSIES 66 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF----KSFWSE 188 ++ L+ + + + ++++ NP S+ +PK+ + + E+++ Sbjct: 67 ILRNLSGISAFYDFLIQEKIFDKNPVASISKPKKWEKLPKFLNFEEVEALINAPDKSTPT 126 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-----IITVELPDGFMK 243 G + + + +G+R S+ + + + G+ I L D + Sbjct: 127 GYRDNIILKTFYSTGMRVSELVKCKTSDIDFKRGIVSVVGKGSKQRFLPIYQSLQDELKQ 186 Query: 244 LLAMTPI------GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSAT 295 + + F+N + + + K KAG+ K S H +R AT Sbjct: 187 YIEVRHRYFIKEKDNGFLFLNKNSAPLTRVYCWMLIKKYCKKAGIKKDISPHTLRHSFAT 246 Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 GA + G + E YT D Sbjct: 247 HLLTNGADLRTIQLLLGHSDIATTEIYTHITDNK 280 >gi|326692503|ref|ZP_08229508.1| tyrosine recombinase XerD [Leuconostoc argentinum KCTC 3773] Length = 298 Score = 149 bits (376), Expect = 6e-34, Method: Composition-based stats. Identities = 47/287 (16%), Positives = 95/287 (33%), Gaps = 24/287 (8%) Query: 70 TLKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGVESR 126 T+ I++Y L+ N+ S+ Q + + + + + Sbjct: 4 TINLAIADYLHYIRIERGLSDNTINSYRQDLTQFGAYLTAEKLTLEAVDHVVVLAWLNQL 63 Query: 127 KHTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 + S + +TS+R F + +++ V NP ++ PK+ T + ++ Sbjct: 64 RLVGKSNNSVIRMVTSLRKFFGYLAQEKIVLPNPMRDIQPPKKATHLPAVLSVAEIDALL 123 Query: 184 SF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELP 238 + + R E + +GLR S+ + L + I+T K + + Sbjct: 124 AVPTDTTPLDIRNRTLIEVMYATGLRVSELVNLKLSDLHLQLGLIQTIGKGDKERIIPIG 183 Query: 239 DGFMKLLAMTPI----------GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SA 286 + L F+N+ ++ K +AG+ K S Sbjct: 184 EVAADWLTRYFASSRLALLKGKASPYVFLNDRGGQLTRQGVWKIIKKLVVEAGITKDVSP 243 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 H +R AT + GA + G + + YT + RL Sbjct: 244 HTLRHSFATHILENGADLRIVQELLGHADISTTQIYTH-ISKKRLSE 289 >gi|259500665|ref|ZP_05743567.1| integrase/recombinase XerD [Lactobacillus iners DSM 13335] gi|259168049|gb|EEW52544.1| integrase/recombinase XerD [Lactobacillus iners DSM 13335] Length = 297 Score = 149 bits (376), Expect = 6e-34, Method: Composition-based stats. Identities = 46/274 (16%), Positives = 100/274 (36%), Gaps = 25/274 (9%) Query: 75 ISEYRKSAH-WGSLAVNSRISFESYFDQ---IIRKSG--DFDYRKITTKHIRSGVESRKH 128 + +Y + A L+ N+ +S+ + ++ G ++ + + + Sbjct: 6 LEDYLRFAQIERGLSNNTLLSYRQDLLEYFSFLKSLGITTWEVDALIIDSFFAQERDKGK 65 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF--- 185 +S + L+S+R ++W RQ + +P L ++ PK++ + ++ + + Sbjct: 66 AIASISRMLSSLRKFYQWLFRQNLIKQDPLLRIDSPKKEKRLPTAMSTTEVTKLINMPDT 125 Query: 186 -WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMK 243 G + R E L +G+R S+ + + IK K + + + M Sbjct: 126 TTDLGIRDRAILETLYATGMRVSEVINLNEDSIHEELHLIKVFGKGSKQRLIPISNVAMS 185 Query: 244 LLAMTPIG------------KETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289 + I ++ F+N+ K+ K AG+NK + H + Sbjct: 186 WIKKYQITVRNKTLLESGKFEKAIFLNSRGGKITRQAVWQMIKRYCQLAGINKNVTPHTL 245 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYT 323 R AT + GA + G + + YT Sbjct: 246 RHTFATHLLENGADLRIVQEILGHSDISTTQIYT 279 >gi|300767490|ref|ZP_07077402.1| tyrosine recombinase XerD [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|300495309|gb|EFK30465.1| tyrosine recombinase XerD [Lactobacillus plantarum subsp. plantarum ATCC 14917] Length = 305 Score = 149 bits (376), Expect = 6e-34, Method: Composition-based stats. Identities = 45/273 (16%), Positives = 93/273 (34%), Gaps = 25/273 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH------IRSGVESRKHTPSSAIQFLT 138 L N+ S+ ++ + ++ I ++ Sbjct: 25 RGLVENTIKSYSQDLTTFSEYLMSQQITDYRVVDRYVLLNYLQYLDEAGKSRNTIIHSVS 84 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRL 194 S+R F++ + + +P L ++ PKR + + ++++ + G + R Sbjct: 85 SLRKFFQYLAQMHAIDTDPMLKIDTPKRAQHLPQVLSPREVERLLAVPKLNTPLGLRDRT 144 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAM------ 247 E + +GLR S++ + L ++ I+T K + + D + + Sbjct: 145 LLEVMYATGLRVSETINLTMDDLHLDLGLIQTIGKGDKERIIPIGDVAIDFITRYLKTAR 204 Query: 248 -----TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300 FINN K++ KA+ AG+ K + H +R AT + Sbjct: 205 PKLVSAKRRNSYLFINNHGGKLSRQGVWKNLKAEVKAAGIEKNVTPHTLRHSFATHILEN 264 Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 GA + G + + YT + RL Sbjct: 265 GADLRVVQELLGHADISTTQIYTH-ISKKRLAE 296 >gi|261211515|ref|ZP_05925803.1| site-specific recombinase XerD [Vibrio sp. RC341] gi|260839470|gb|EEX66096.1| site-specific recombinase XerD [Vibrio sp. RC341] Length = 302 Score = 149 bits (376), Expect = 6e-34, Method: Composition-based stats. Identities = 47/278 (16%), Positives = 105/278 (37%), Gaps = 26/278 (9%) Query: 74 LISEYRKSAHW--GSLAVNSRISFESYFDQIIRKSGDFDYRKITT-----KHIRSGVESR 126 L+ ++ + W LA N+ S+ + +++ YR + +S + + Sbjct: 11 LVEQFLDTM-WLERGLAENTVASYRNDLSKLLEWMEQHHYRLDFISFSGLQEYQSWLSEQ 69 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF- 185 + PSS + L+++R LF++ R++ A +P + PK + ++ + + Sbjct: 70 NYKPSSKARMLSAIRRLFQYLHREKVRADDPSALLISPKLPIRLPKDLSEAQVDALLNAP 129 Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGF 241 + + E L +GLR ++ ++++ ++ K G V + + Sbjct: 130 DPQTPIELRDKAMLELLYATGLRVTELVSLTMENMSLRQGVVRVIGKGGKERLVPMGENA 189 Query: 242 MKLLAMTPIGKETFFI----------NNDKQKMNATQFSIWFKAKATKAGVN---KSAHG 288 ++ + + + ++ Q+M F K A AG++ S H Sbjct: 190 IEWIETFLQQGRSLLLGEQTSDIVFPSSRGQQMTRQTFWHRIKHYAVIAGIDVEKLSPHV 249 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 +R AT + GA + G + + YT A Sbjct: 250 LRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVA 287 >gi|260551079|ref|ZP_05825283.1| tyrosine recombinase XerD [Acinetobacter sp. RUH2624] gi|260405846|gb|EEW99334.1| tyrosine recombinase XerD [Acinetobacter sp. RUH2624] Length = 306 Score = 149 bits (376), Expect = 6e-34, Method: Composition-based stats. Identities = 53/294 (18%), Positives = 104/294 (35%), Gaps = 20/294 (6%) Query: 55 TPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD---QIIRKSGDFDY 111 K+ I SP + P L +L +R +++ ++R ++ S ++ +K+ + Sbjct: 2 INKKPRIPSPVQIPEHLSFL-QGFRDYLVAQTVSPHTRNAYLSDLIQCAELHKKNSLPKW 60 Query: 112 RKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171 + + +P S + L+++R +K+ Q+ + NP + PK Sbjct: 61 SSDDISDVLIELTKIGKSPRSIARCLSALRQFYKFLREQKLRSDNPVATHHSPKIGRALP 120 Query: 172 RPWTKEDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-T 226 + ++ED++ G + R FE L GLR S+ ++ + ++ T Sbjct: 121 KDLSEEDVEALIQAPDITTALGLRDRAMFEVLYACGLRVSELINLRLELINLKQGYLRIT 180 Query: 227 QKTGTIITVELPDGFMKLLAMT---------PIGKETFFINNDKQKMNATQFSIWFKAKA 277 K V L + + F+ M+ F K A Sbjct: 181 GKGNKERLVPLGQYACDWVERYLNDARPQLYKTSTDYLFLTQHGGIMSRQNFWYAIKRYA 240 Query: 278 TKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 +A + S H +R AT + GA + G + + YT A Sbjct: 241 LQANIQAELSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQVR 294 >gi|209521010|ref|ZP_03269744.1| tyrosine recombinase XerD [Burkholderia sp. H160] gi|209498544|gb|EDZ98665.1| tyrosine recombinase XerD [Burkholderia sp. H160] Length = 318 Score = 149 bits (376), Expect = 6e-34, Method: Composition-based stats. Identities = 49/286 (17%), Positives = 89/286 (31%), Gaps = 25/286 (8%) Query: 67 KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE-- 124 ++ L+ N+ ++ + T Sbjct: 26 SSASIDAFCDALWLE---HGLSRNTLDAYRRDLRLFCEWLAHTRNASLDTASEADLTAYS 82 Query: 125 --SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 ++ +SA + L+ R + WAVR+ A +P L + K+ ++ ++ Sbjct: 83 AARQQDKATSANRRLSVFRRYYAWAVREHRAAADPTLRIRSAKQPPRFPSTLSEAQVEAL 142 Query: 183 KSF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVEL 237 G + R E + SGLR ++ + N ++ T K + Sbjct: 143 LGAPDIDTPLGLRDRTMLELMYASGLRVTELVTLKTVEVGLNEGVVRVTGKGSKERLIPF 202 Query: 238 PDGFMKLLAM----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--S 285 + + P + F+ + M QF K A AGV+ S Sbjct: 203 GEEAHAWIERYLREARPALLGPRAADALFVTARAEGMTRQQFWNIIKRHAQVAGVHAPLS 262 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 H +R AT + GA + G + + YT A R RL Sbjct: 263 PHTLRHAFATHLLNHGADLRVVQLLLGHTDISTTQIYTHVA-RERL 307 >gi|302191354|ref|ZP_07267608.1| tyrosine recombinase XerD [Lactobacillus iners AB-1] gi|312871387|ref|ZP_07731482.1| tyrosine recombinase XerD [Lactobacillus iners LEAF 3008A-a] gi|311093040|gb|EFQ51389.1| tyrosine recombinase XerD [Lactobacillus iners LEAF 3008A-a] Length = 296 Score = 149 bits (376), Expect = 6e-34, Method: Composition-based stats. Identities = 46/274 (16%), Positives = 100/274 (36%), Gaps = 25/274 (9%) Query: 75 ISEYRKSAH-WGSLAVNSRISFESYFDQ---IIRKSG--DFDYRKITTKHIRSGVESRKH 128 + +Y + A L+ N+ +S+ + ++ G ++ + + + Sbjct: 5 LEDYLRFAQIERGLSNNTLLSYRQDLLEYFSFLKSLGITTWEVDALIIDSFFAQERDKGK 64 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF--- 185 +S + L+S+R ++W RQ + +P L ++ PK++ + ++ + + Sbjct: 65 AIASISRMLSSLRKFYQWLFRQNLIKQDPLLRIDSPKKEKRLPTAMSTTEVTKLINMPDT 124 Query: 186 -WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMK 243 G + R E L +G+R S+ + + IK K + + + M Sbjct: 125 TTDLGIRDRAILETLYATGMRVSEVINLNEDSIHEELHLIKVFGKGSKQRLIPISNVAMS 184 Query: 244 LLAMTPIG------------KETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289 + I ++ F+N+ K+ K AG+NK + H + Sbjct: 185 WIKKYQITVRNKTLLESGKFEKAIFLNSRGGKITRQAVWQMIKRYCQLAGINKNVTPHTL 244 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYT 323 R AT + GA + G + + YT Sbjct: 245 RHTFATHLLENGADLRIVQEILGHSDISTTQIYT 278 >gi|315122595|ref|YP_004063084.1| phage-related integrase/recombinase [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495997|gb|ADR52596.1| phage-related integrase/recombinase [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 151 Score = 149 bits (376), Expect = 7e-34, Method: Composition-based stats. Identities = 76/144 (52%), Positives = 105/144 (72%), Gaps = 1/144 (0%) Query: 1 MTPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY 60 M+ + +LP FV +E+TRHGKIIYYFRKG R RLP P + +F+PAY+SAL+G ++ Sbjct: 1 MSRNTKLP-FVVREKTRHGKIIYYFRKGKDDRTRLPIPSDPSFMPAYLSALSGIPIEQSS 59 Query: 61 INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120 I K+P T++WLI +YRKS HW SLA+ +R + F II+ SGDF+Y+KIT KHIR Sbjct: 60 IKPVIKEPQTMRWLIEQYRKSGHWASLALKTRKRIDQDFSNIIKNSGDFEYKKITAKHIR 119 Query: 121 SGVESRKHTPSSAIQFLTSMRVLF 144 G+E RK TP+SA+ FL+S+R+ + Sbjct: 120 LGLEHRKSTPASAVLFLSSIRLSY 143 >gi|28378545|ref|NP_785437.1| integrase/recombinase [Lactobacillus plantarum WCFS1] gi|254556759|ref|YP_003063176.1| integrase/recombinase [Lactobacillus plantarum JDM1] gi|308180702|ref|YP_003924830.1| integrase/recombinase [Lactobacillus plantarum subsp. plantarum ST-III] gi|28271381|emb|CAD64286.1| integrase/recombinase [Lactobacillus plantarum WCFS1] gi|254045686|gb|ACT62479.1| integrase/recombinase [Lactobacillus plantarum JDM1] gi|308046193|gb|ADN98736.1| integrase/recombinase [Lactobacillus plantarum subsp. plantarum ST-III] Length = 296 Score = 149 bits (376), Expect = 7e-34, Method: Composition-based stats. Identities = 45/273 (16%), Positives = 93/273 (34%), Gaps = 25/273 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH------IRSGVESRKHTPSSAIQFLT 138 L N+ S+ ++ + ++ I ++ Sbjct: 16 RGLVENTIKSYSQDLTTFSEYLMSQQITDYRVVDRYVLLNYLQYLDEAGKSRNTIIHSVS 75 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRL 194 S+R F++ + + +P L ++ PKR + + ++++ + G + R Sbjct: 76 SLRKFFQYLAQMHAIDTDPMLKIDTPKRAQHLPQVLSPREVERLLAVPKLNTPLGLRDRT 135 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAM------ 247 E + +GLR S++ + L ++ I+T K + + D + + Sbjct: 136 LLEVMYATGLRVSETINLTMDDLHLDLGLIQTIGKGDKERIIPIGDVAIDFITRYLKTAR 195 Query: 248 -----TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300 FINN K++ KA+ AG+ K + H +R AT + Sbjct: 196 PKLVSAKRRNSYLFINNHGGKLSRQGVWKNLKAEVKAAGIEKNVTPHTLRHSFATHILEN 255 Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 GA + G + + YT + RL Sbjct: 256 GADLRVVQELLGHADISTTQIYTH-ISKKRLAE 287 >gi|193076109|gb|ABO10716.2| site-specific tyrosine recombinase [Acinetobacter baumannii ATCC 17978] Length = 306 Score = 149 bits (376), Expect = 7e-34, Method: Composition-based stats. Identities = 54/294 (18%), Positives = 105/294 (35%), Gaps = 20/294 (6%) Query: 55 TPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF---DQIIRKSGDFDY 111 K+ I SP + P L +L +R +++ ++R ++ S ++ +K+ D+ Sbjct: 2 INKKPRIPSPVQIPEHLSFL-QGFRDYLVAQTVSPHTRNAYLSDLIQCSELHKKNRLPDW 60 Query: 112 RKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171 + + +P S + L+++R +K+ Q+ + NP + PK Sbjct: 61 TSDDISDVLIELTKVGKSPRSIARCLSALRQFYKFLREQKLRSDNPVATHHSPKIGRALP 120 Query: 172 RPWTKEDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-T 226 + ++ED++ G + R FE L GLR S+ ++ + ++ T Sbjct: 121 KDLSEEDVEALIQAPDITTALGLRDRAMFEVLYACGLRVSELLNLRLELINLKQGYLRIT 180 Query: 227 QKTGTIITVELPDGFMKLLAMT---------PIGKETFFINNDKQKMNATQFSIWFKAKA 277 K V L + + F+ M+ F K A Sbjct: 181 GKGNKERLVPLGQYACDWVERYLNEARPQLYKSSTDYLFLTQHGGIMSRQNFWYAIKHYA 240 Query: 278 TKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 +A + S H +R AT + GA + G + + YT A Sbjct: 241 LQANIQAELSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQVR 294 >gi|331673529|ref|ZP_08374292.1| putative integrase for prophage [Escherichia coli TA280] gi|331068802|gb|EGI40194.1| putative integrase for prophage [Escherichia coli TA280] Length = 341 Score = 149 bits (376), Expect = 7e-34, Method: Composition-based stats. Identities = 62/330 (18%), Positives = 109/330 (33%), Gaps = 29/330 (8%) Query: 6 RLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65 +LPP V + Y K R ES + A L K E + R Sbjct: 12 KLPPNVYPNK------YSYVWKPTSR--------ESVTLTAIKDGLAALWKKYEETVNNR 57 Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125 + T L ++ SA++ L+ ++ + + +++ G I +HIR ++ Sbjct: 58 DRAMTFGRLWEKFLASAYYSDLSPRTQKDYLQHQKKLLAVFGKVPADSIKPEHIRRYMDK 117 Query: 126 RKH-TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 R + + A +SM ++ W + YV NPC V + K K T ++ Q S Sbjct: 118 RGEQSKTQANHEKSSMSRVYSWGYERGYVKANPCAGVSKFKAKNRERYV-TDKEYQAVLS 176 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244 S +A E R SD + + N+ I+ KTG + Sbjct: 177 VASP--PVFIAMEIAYLCAARISDVLSLKWEQIGNDGIFIQQGKTGKKQIKAWSPRLQSV 234 Query: 245 LAMTP--IGKETFFINNDKQKMNATQFSIWFKAKATKAG------VNKSAHGVRKFSATI 296 + N + F+ + AG + + H + K Sbjct: 235 IEKAKQLPKSAYVISNQYGNRYMYKGFNEMWVETRNLAGQISGIATDFTFHDL-KAKGIS 293 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGA 326 + ++ + G KT Q Y + Sbjct: 294 DYE--GSSRDKQLFSGHKTEGQVLIYDRKV 321 >gi|323186667|gb|EFZ71993.1| phage integrase family protein [Escherichia coli RN587/1] Length = 300 Score = 149 bits (376), Expect = 7e-34, Method: Composition-based stats. Identities = 47/266 (17%), Positives = 88/266 (33%), Gaps = 15/266 (5%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH- 128 T L ++ SA++ L+ ++ + + +++ G I HIR ++ R Sbjct: 2 TFGRLWEKFLASAYYSDLSPRTQKDYLQHQKKLLAVFGKVPADSIKPVHIRRYMDKRGEQ 61 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 + + A +SM ++ W + YV NPC V + K K T ++ Q S Sbjct: 62 SKTQANHEKSSMSRVYSWGYERGYVKGNPCAGVSKFKAKNRERYV-TDKEYQAVLSVAPL 120 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT 248 +A E R SD + + N+ I+ KTG + Sbjct: 121 --PVFIAMEIAYLCAARVSDVLSLKWEQIGNDGIFIQQGKTGKKQIKAWSPRLQAAIEKA 178 Query: 249 P--IGKETFFINNDKQKMNATQFSIWFKAKATKAG------VNKSAHGVRKFSATISADA 300 N + F+ + +AG + + H + K + Sbjct: 179 KQLPTSAYVISNQYGNRYMYKGFNEMWVEARNRAGKISGILTDFTFHDL-KAKGISDYE- 236 Query: 301 GATAHELMATYGWKTVDQAETYTKGA 326 ++ + G KT Q Y + Sbjct: 237 -GSSRDKQLFSGHKTEGQVLIYDRKV 261 >gi|237749023|ref|ZP_04579503.1| tyrosine recombinase XerD [Oxalobacter formigenes OXCC13] gi|229380385|gb|EEO30476.1| tyrosine recombinase XerD [Oxalobacter formigenes OXCC13] Length = 312 Score = 149 bits (375), Expect = 7e-34, Method: Composition-based stats. Identities = 49/274 (17%), Positives = 97/274 (35%), Gaps = 23/274 (8%) Query: 86 SLAVNSRISFESYF----DQIIRKSGDFDYRKITTKHIRSGVESR--KHTPSSAIQFLTS 139 L+ N+ ++ + + D D K+ H+ +R + +SA + LT Sbjct: 29 GLSKNTLDAYRRDLLLFARWLEKNCPDIDLLKVDQNHLNDYFWARHAESKATSANRRLTV 88 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRLA 195 ++ ++ +R ++ NPCL ++ K+ + ++ ++ G + R Sbjct: 89 LKRFYRLQLRLGRISENPCLKLKAAKQAARFPKTLSETQVEALLGAPDQEKSLGLRDRAM 148 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT---------IITVELPDGFMKLLA 246 E + SGLR S+ + + N ++ G V L + Sbjct: 149 IELMYASGLRVSELVDLKLVEVGMNEGVLRIIGKGEKTRLVPFGEEARVWLERYMQDARS 208 Query: 247 MTPIGK--ETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGA 302 + GK + F+ M F K A K+G++ S H +R AT + GA Sbjct: 209 LILAGKMSDYLFVTARGTAMTRQMFWTLIKKYALKSGIHEPLSPHTLRHAFATHLLNHGA 268 Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336 + G + + YT A + + Sbjct: 269 DLRVVQLLLGHADISTTQIYTHVAQQRLKQLHAM 302 >gi|167627279|ref|YP_001677779.1| site-specific recombinase [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|167597280|gb|ABZ87278.1| site-specific recombinase [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 292 Score = 149 bits (375), Expect = 7e-34, Method: Composition-based stats. Identities = 41/265 (15%), Positives = 87/265 (32%), Gaps = 20/265 (7%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKI---TTKHIRSGVESRKHTPSSAIQFLTSMR 141 L+ N+ S+ + + + + S ++ S + ++++R Sbjct: 16 HGLSQNTISSYRTDLKFLQSYFSQVELINLDFEQLYAFISYRSKNGYSSRSNARMISTLR 75 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAFE 197 + W + NP + PK + T+ D+++ G + + E Sbjct: 76 KFYNWLISTGQATTNPTTKLTLPKLAKRLPKDMTEVDVERLLQAPDLTDDIGIRDKAMLE 135 Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-IITVELPDGFMKLLAMTPIGKE--- 253 + +GLR S+ + N+ I+ G+ V + + ++ L Sbjct: 136 LMYATGLRVSELVGLNTHDIDLNVGVIQVMGKGSKERIVPIGEYALEYLHKYFEESRELL 195 Query: 254 -------TFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATA 304 FI+ +++ F K+ AG+ + S H +R AT + GA Sbjct: 196 AKNFKEKAVFISKHSKRITRQSFWHRIKSYVLIAGINTDISPHTLRHAFATHLLNHGADL 255 Query: 305 HELMATYGWKTVDQAETYTKGADRI 329 + G V YT + Sbjct: 256 RSVQLLLGHSNVSTTTIYTHISQNR 280 >gi|330752024|emb|CBL80536.1| tyrosine recombinase [uncultured Flavobacteria bacterium] Length = 323 Score = 149 bits (375), Expect = 8e-34, Method: Composition-based stats. Identities = 47/264 (17%), Positives = 97/264 (36%), Gaps = 24/264 (9%) Query: 85 GSLAVNSRISFESYFDQIIR----KSGDFDYRKITTKHIRSGVE--SRKHTPSSAIQFLT 138 L+ NS ++ +++++ I + ++ + +++ P S + ++ Sbjct: 43 RGLSENSIANYTFDINKLVKWMVINDIKISPINIEKETLQEFIYTIAKELNPRSQSRIIS 102 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRL 194 ++ F + V +EY NP +E PK + + E++ S +G + R Sbjct: 103 GLKGFFNYLVFEEYRTTNPLDLIESPKIGRKLPDILSIEEIDAIISTIDLTKPQGERNRG 162 Query: 195 AFEFLLYSGLRCSDSCRAGVQH--LQNNIFSIKTQKTGTI------ITVELPDGFMKLLA 246 E L GLR S+ + + + +T++ D + + Sbjct: 163 IIEVLYGCGLRVSELINLKISDLFFDEGFIKVTGKGNKQRFVPIGSLTIKFIDIYRNEIR 222 Query: 247 ----MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300 + P ++T F+N + K KAG++K S H R AT + Sbjct: 223 VHQVIKPNAQDTLFLNRRGNGLTRAMIFHIVKELTEKAGIHKKISPHTFRHSFATHLLEN 282 Query: 301 GATAHELMATYGWKTVDQAETYTK 324 GA + G +++ E YT Sbjct: 283 GADLRAIQQMLGHESITTTEIYTH 306 >gi|257453533|ref|ZP_05618823.1| tyrosine recombinase XerD [Enhydrobacter aerosaccus SK60] gi|257448991|gb|EEV23944.1| tyrosine recombinase XerD [Enhydrobacter aerosaccus SK60] Length = 314 Score = 149 bits (375), Expect = 8e-34, Method: Composition-based stats. Identities = 49/278 (17%), Positives = 91/278 (32%), Gaps = 26/278 (9%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS---GVESRKHTP 130 I ++R+ LA N+R ++ + + + + + + + T Sbjct: 23 YIQQFRQELLTRGLATNTRNAYIRDLM-LCETTCSKAITRWDASDVLACLAALYKQGKTA 81 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----W 186 S + L+S++ F W + NPC ++ PK + ++ D+ + Sbjct: 82 RSQARALSSLKQFFLWQINANQRDDNPCEHIKTPKLGRALPKDLSESDVDALLASPDTST 141 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVEL-------- 237 G + + FE L GLR S+ + + N ++ T K V L Sbjct: 142 PLGMRDQAMFEVLYACGLRVSELIHLSLSEVNLNAGWLQVTGKGDKTRLVPLGEVAIDVL 201 Query: 238 -------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHG 288 + + F+ M F K A +AG+ S H Sbjct: 202 TDYLTLARPQLCIMKNGRESRCQAVFLTQQGGYMTRQNFWYVIKRYAKQAGIESEISPHT 261 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 +R AT + GA + G + + YT A Sbjct: 262 LRHAFATHLLNHGADLRSVQMLLGHSDLSTTQIYTHVA 299 >gi|315633750|ref|ZP_07889040.1| tyrosine recombinase XerD [Aggregatibacter segnis ATCC 33393] gi|315477792|gb|EFU68534.1| tyrosine recombinase XerD [Aggregatibacter segnis ATCC 33393] Length = 297 Score = 149 bits (375), Expect = 8e-34, Method: Composition-based stats. Identities = 45/270 (16%), Positives = 93/270 (34%), Gaps = 24/270 (8%) Query: 85 GSLAVNSRISFESYFDQII-----RKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139 L+ N+ S+ + RK D + + + + +S + L++ Sbjct: 18 KGLSPNTVQSYRLDLTALCDWLSERKLSLLDLDSVDLQTFLGERVEQGYKATSTARLLSA 77 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRLA 195 +R LF++ +++Y +P + PK + + T++ + + + + Sbjct: 78 IRKLFQYLYQEKYRTDDPSAVLSSPKLPSRLPKYLTEQQVTDLLNVQSLEQPIELRDKAM 137 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLA-----MTP 249 E L +GLR ++ + N ++ K V + + + P Sbjct: 138 LELLYATGLRVTELVSLHTDSISLNQGVVRVIGKGNKERIVPMGEEATHWVKQFMLFARP 197 Query: 250 I-----GKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAG 301 I + F + +M F K A A ++ S H +R AT + G Sbjct: 198 ILLNGQSSDVLFPSRRGTQMTRQTFWHRIKHYAVLAEIDSNMLSPHVLRHAFATHLVNHG 257 Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRL 331 A + G + + YT A + RL Sbjct: 258 ADLRVVQMLLGHSDLSTTQIYTHVA-KERL 286 >gi|260844576|ref|YP_003222354.1| integrase [Escherichia coli O103:H2 str. 12009] gi|257759723|dbj|BAI31220.1| integrase [Escherichia coli O103:H2 str. 12009] Length = 341 Score = 149 bits (375), Expect = 8e-34, Method: Composition-based stats. Identities = 60/330 (18%), Positives = 108/330 (32%), Gaps = 29/330 (8%) Query: 6 RLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65 +LPP V + Y K R ES + A L + E + R Sbjct: 12 KLPPNVYPNK------YSYVWKPTSR--------ESVTLTAIKDGLAALWKRYEETVNNR 57 Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125 + T L ++ SA++ L+ ++ + + +++ G I +HIR ++ Sbjct: 58 DRAMTFGRLWEKFLASAYYSDLSPRTQKDYLQHQKKLLAVFGKVPADSIKPEHIRRYMDK 117 Query: 126 RKH-TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 R + + A +SM ++ W + YV NPC V + K K T ++ Q S Sbjct: 118 RGEQSKTQANHEKSSMSRVYSWGYERGYVKGNPCAGVSKFKAKNRERYV-TDKEYQAVLS 176 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244 +A E R SD + + N+ I+ KTG Sbjct: 177 VAPL--PVFIAMEIAYLCAARVSDVLSLKWEQIGNDGIFIQQGKTGKKQIKAWSPRLQAA 234 Query: 245 LAMTP--IGKETFFINNDKQKMNATQFSIWFKAKATKAG------VNKSAHGVRKFSATI 296 + N + F+ + +AG + + H + K Sbjct: 235 IEKAKQLPTSAYVISNQYGNRYMYKGFNEMWVEARNRAGKISGILTDFTFHDL-KAKGIS 293 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGA 326 + ++ + G KT Q Y + Sbjct: 294 DYE--GSSRDKQLFSGHKTEGQVLIYDRKV 321 >gi|189502574|ref|YP_001958291.1| hypothetical protein Aasi_1239 [Candidatus Amoebophilus asiaticus 5a2] gi|189498015|gb|ACE06562.1| hypothetical protein Aasi_1239 [Candidatus Amoebophilus asiaticus 5a2] Length = 299 Score = 149 bits (375), Expect = 9e-34, Method: Composition-based stats. Identities = 60/282 (21%), Positives = 109/282 (38%), Gaps = 28/282 (9%) Query: 70 TLKWLISEYRKSAHW-GSLAVNSRISFESYFDQII-----RKSGDFDYRKITTKHIRSGV 123 T + I ++ SLA NS +++ S ++ R+ G + T H+R + Sbjct: 2 TWELAIQQFEIHLQLERSLAENSILAYGSDLRKLCQFIELRQLGLSPLT-LQTTHLRDFL 60 Query: 124 E---SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 +S + L+++R +++ + + Y+ +P VERP + + +++ Sbjct: 61 MYLYELGIGATSQARILSAIRGFYQFLLLEGYLETDPTKLVERPVLGRKLPHTLSVHEIE 120 Query: 181 QFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITV 235 G + R E L SGLR S+ + + ++ K V Sbjct: 121 ILFGTIDHSTAMGMRNRAMLETLYSSGLRVSELISLRMSDIYFEEMFLQVLGKGNKQRLV 180 Query: 236 ELPDGFMKLLAM--------TPIGKET---FFINNDKQKMNATQFSIWFKAKATKAGVNK 284 + +K L + PI KE F+N KM+ + K A+KAG+ + Sbjct: 181 PIGKIALKYLRIYIEEVRIHFPIKKEAANCVFLNKRGSKMSRVMVFLIIKELASKAGLQQ 240 Query: 285 --SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 S H R AT + GA + A G +++ E YT Sbjct: 241 EISPHTFRHSFATHLVEGGADLRAVQAMLGHESITTTEIYTH 282 >gi|257869544|ref|ZP_05649197.1| phage integrase [Enterococcus gallinarum EG2] gi|257803708|gb|EEV32530.1| phage integrase [Enterococcus gallinarum EG2] Length = 296 Score = 149 bits (375), Expect = 9e-34, Method: Composition-based stats. Identities = 43/264 (16%), Positives = 98/264 (37%), Gaps = 24/264 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH------IRSGVESRKHTPSSAIQFLT 138 L+ N+R S+E +Q + + + ++ + ++ I+ ++ Sbjct: 16 RGLSQNTRKSYERDLEQYLTFLTEQHIKDWQAVDRVLILSFLQQLQQSGKSSATIIRMVS 75 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRL 194 S+R ++ ++ + +P ++ PK++ + + ++++ G + R Sbjct: 76 SLRRFHQFLRQERFTDHDPMQHIDSPKKQQKLPDTLSLSEVERLIETPDTKEVLGIRDRA 135 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVEL-----------PDGFM 242 E + +GLR S+ ++ L ++ + T K V L + Sbjct: 136 ILEVMYATGLRVSELIGLQLKDLHLSMGLLQTTGKGDKERIVPLGDLAIQWIETYLEEAR 195 Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300 L + F+NN ++++ KA KAG+ K + H +R AT + Sbjct: 196 PFLTRKHPEESHLFVNNHGKQLSRQGIWKNLKALVRKAGITKNVTPHTLRHSFATHLLEN 255 Query: 301 GATAHELMATYGWKTVDQAETYTK 324 GA + G + + YT Sbjct: 256 GADLRTVQELLGHADISTTQIYTH 279 >gi|329962342|ref|ZP_08300347.1| tyrosine recombinase XerD [Bacteroides fluxus YIT 12057] gi|328530203|gb|EGF57084.1| tyrosine recombinase XerD [Bacteroides fluxus YIT 12057] Length = 317 Score = 149 bits (375), Expect = 9e-34, Method: Composition-based stats. Identities = 54/275 (19%), Positives = 102/275 (37%), Gaps = 24/275 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQII-----RKSGDFDYRKITTKHIRSGVESRK 127 +I +Y + SL+ N+ ++ + ++++ K + +G+ Sbjct: 16 IIRKYNQYLKLEKSLSPNTLDAYRTDLEKLLRFLEAEKIDILAVTLDDLQRFTAGLHDIG 75 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 P S + L+ ++ F + V +Y+ +P +E PK + T E++ + S Sbjct: 76 IHPRSQARILSGIKSFFHFLVLADYLEGDPSELLEGPKIGFKLPEVLTVEEIDKIISTVD 135 Query: 188 ----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT-VELPDGFM 242 EG + R E L GLR S+ C + L + IK + G+ V + + Sbjct: 136 LSTNEGQRNRAILETLYSCGLRVSELCNLKISDLYFDEGFIKVEGKGSKQRLVPISPRAI 195 Query: 243 KLLAMTPIGK-----------ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289 K + + + F+ ++ K A KAG+ K S H Sbjct: 196 KEIKNWFADRNEKWKIKKDFEDYVFLARWGNGISRIMIFHLIKELAEKAGITKNISPHTF 255 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 R AT + GA + G +++ E YT Sbjct: 256 RHSFATHLLEGGANLRAIQCMLGHESIATTEIYTH 290 >gi|293610050|ref|ZP_06692351.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292827282|gb|EFF85646.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 306 Score = 149 bits (375), Expect = 9e-34, Method: Composition-based stats. Identities = 55/292 (18%), Positives = 104/292 (35%), Gaps = 20/292 (6%) Query: 57 KREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITT 116 K+ I SP + P L +L +R +++ ++R ++ S Q + T+ Sbjct: 4 KKPRIPSPVQIPEHLSFL-QGFRDYLVAQTVSPHTRNAYLSDLIQCSELHKKSLLPEWTS 62 Query: 117 KHIRSGVESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173 +I + +P S + L+++R +K+ Q+ + NP + PK + Sbjct: 63 DNIADVLIELTKVGKSPRSIARCLSALRQFYKFLREQKLRSDNPVATHHSPKIGRALPKD 122 Query: 174 WTKEDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQK 228 ++ED++ G + R FE L GLR S+ ++ + ++ T K Sbjct: 123 LSEEDVEALIQAPDINTALGLRDRAMFEVLYACGLRVSELLNLRLELINLKQGYLRITGK 182 Query: 229 TGTIITVELPDGFMKLLAMT---------PIGKETFFINNDKQKMNATQFSIWFKAKATK 279 V L + + + F+ M+ F K A + Sbjct: 183 GNKERLVPLGQFACEWVERYLQDARPQLYKSSTDYLFLTQHGGIMSRQNFWYAIKRYALQ 242 Query: 280 AGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 A + S H +R AT + GA + G + + YT A Sbjct: 243 ANIQAELSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQVR 294 >gi|255320980|ref|ZP_05362153.1| tyrosine recombinase XerD [Acinetobacter radioresistens SK82] gi|262379931|ref|ZP_06073086.1| tyrosine recombinase XerD [Acinetobacter radioresistens SH164] gi|255301944|gb|EET81188.1| tyrosine recombinase XerD [Acinetobacter radioresistens SK82] gi|262298125|gb|EEY86039.1| tyrosine recombinase XerD [Acinetobacter radioresistens SH164] Length = 306 Score = 149 bits (375), Expect = 9e-34, Method: Composition-based stats. Identities = 53/290 (18%), Positives = 105/290 (36%), Gaps = 20/290 (6%) Query: 57 KREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITT 116 K+ I SP + P L +L +R +++ ++R ++ S Q + Sbjct: 4 KKPRIPSPVQIPEHLSFL-QGFRDFLIAQTVSPHTRNAYLSDLIQCSEYCPSTPLPLWNS 62 Query: 117 KHIRS---GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173 + I + + +P S + L+++R FK+ Q+ + NP + + PK + Sbjct: 63 EDIADVLFELTKQGKSPRSIARTLSALRSFFKFMREQQLRSDNPVATHKTPKLGRALPKD 122 Query: 174 WTKEDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQK 228 ++ D++ G + R E L GLR ++ ++ + ++ T K Sbjct: 123 LSELDVEHLLHAPDINTALGLRDRAMLEVLYACGLRVTELLNLRLELINLKQGYLRITGK 182 Query: 229 TGTIITVELPDGFMKLL---------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATK 279 V L ++ + + + F+ M+ F K A + Sbjct: 183 GNKERLVPLGQVAIEWVEKYLNEARPQLYKSATDYLFLTQHGGIMSRQNFWYAIKRYALQ 242 Query: 280 AGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 AG+ S H +R AT + GA + G + + YT A Sbjct: 243 AGIQAELSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQ 292 >gi|239502060|ref|ZP_04661370.1| tyrosine recombinase XerD [Acinetobacter baumannii AB900] Length = 306 Score = 149 bits (375), Expect = 9e-34, Method: Composition-based stats. Identities = 54/294 (18%), Positives = 105/294 (35%), Gaps = 20/294 (6%) Query: 55 TPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF---DQIIRKSGDFDY 111 K+ I SP + P L +L +R +++ ++R ++ S ++ +K+ D+ Sbjct: 2 INKKPRIPSPVQIPEHLSFL-QGFRDYLVAQTVSPHTRNAYLSDLIQCSELHKKNRLPDW 60 Query: 112 RKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171 + + +P S + L+++R +K+ Q+ + NP + PK Sbjct: 61 TSDDISDVLIELTKVGKSPRSIARCLSALRQFYKFLREQKLRSDNPVATHHSPKIGRALP 120 Query: 172 RPWTKEDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-T 226 + ++ED++ G + R FE L GLR S+ ++ + ++ T Sbjct: 121 KDLSEEDVEALIQAPDITTALGLRDRAMFEILYACGLRVSELLNLRLELINLKQGYLRIT 180 Query: 227 QKTGTIITVELPDGFMKLLAMT---------PIGKETFFINNDKQKMNATQFSIWFKAKA 277 K V L + + F+ M+ F K A Sbjct: 181 GKGNKERLVPLGQYACDWVERYLNEARPQLYKSSTDYLFLTQHGGIMSRQNFWYAIKRYA 240 Query: 278 TKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 +A + S H +R AT + GA + G + + YT A Sbjct: 241 LQANIQAELSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQVR 294 >gi|170693510|ref|ZP_02884669.1| tyrosine recombinase XerD [Burkholderia graminis C4D1M] gi|170141665|gb|EDT09834.1| tyrosine recombinase XerD [Burkholderia graminis C4D1M] Length = 322 Score = 149 bits (375), Expect = 9e-34, Method: Composition-based stats. Identities = 53/306 (17%), Positives = 95/306 (31%), Gaps = 27/306 (8%) Query: 49 SALTGSTPKREYINSP--RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS 106 SA G+ + SP ++ L+ N+ ++ Sbjct: 10 SADQGADASAGFAQSPLFAASSASIDAFCDALWLE---HGLSRNTLDAYRRDLRLFSEWL 66 Query: 107 GDFDYRKITTKHIRSG----VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE 162 + RK +SA + L+ R + WAVR+ ++P L + Sbjct: 67 AQTRGASLDIASEADLNAYSAARRKDKSTSANRRLSVFRRYYGWAVREHRAKVDPTLRIR 126 Query: 163 RPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ 218 K+ ++ ++ G + R E + SGLR ++ + Sbjct: 127 SAKQPPRFPSTLSEAQVEALLGAPDIDTPLGLRDRTMLELMYASGLRVTELVTLKTVEVG 186 Query: 219 NNIFSIKTQKTGT-IITVELPDGFMKLLAM----------TPIGKETFFINNDKQKMNAT 267 N ++ G+ + + + + F+ N + M Sbjct: 187 LNEGVVRVMGKGSKERLIPFGEEAHGWIERYLRDARPALLGARAADALFVTNRAEGMTRQ 246 Query: 268 QFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 QF K A AGV+ S H +R AT + GA + G + + YT Sbjct: 247 QFWNIIKRHAAAAGVHAPLSPHTLRHAFATHLLNHGADLRVVQLLLGHTDISTTQIYTHV 306 Query: 326 ADRIRL 331 A R RL Sbjct: 307 A-RERL 311 >gi|295398591|ref|ZP_06808623.1| tyrosine recombinase XerD [Aerococcus viridans ATCC 11563] gi|294973192|gb|EFG48987.1| tyrosine recombinase XerD [Aerococcus viridans ATCC 11563] Length = 309 Score = 149 bits (375), Expect = 9e-34, Method: Composition-based stats. Identities = 47/278 (16%), Positives = 99/278 (35%), Gaps = 28/278 (10%) Query: 74 LISEYRKSAHWGS-LAVNSRISFESYFDQIIRKSGDFDYRKITT-------KHIRSGVES 125 +I ++ + LA NS IS++ ++++ K+ H++ E Sbjct: 16 VIEDFLNTMRVEEGLAENSIISYKQELNRMMTYLNRQGIEKVQVISQDTVLDHLKWMDED 75 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 T S+ +++++R F++ + NP + PK+ T +++ + + Sbjct: 76 HLAT-STRSHYVSTLRHFFRYLKLDGVIEDNPMEKISLPKKTQHLPAVLTLDEVDRILAT 134 Query: 186 W----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG 240 G + R E L +G+R S+ ++ + ++ I+T K G V + + Sbjct: 135 PDITKPLGLRDRTLLETLYSTGMRVSEIIHIKLEDIHLDMGFIQTIGKGGKERLVPIGEM 194 Query: 241 FMKLLAMTPIGKE------------TFFINNDKQKMNATQFSIWFKAKATKAGVNK--SA 286 + F+NN + ++ K A + K S Sbjct: 195 AEDWINKYLTEGRPKLVKDEDETQGYLFVNNRGKPLSRQGVWKNLKKMVMMAHITKDISP 254 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R AT + GA + G + + YT Sbjct: 255 HTLRHSFATHLLENGADLRVVQELLGHSDISTTQIYTH 292 >gi|323702534|ref|ZP_08114197.1| tyrosine recombinase XerD [Desulfotomaculum nigrificans DSM 574] gi|323532508|gb|EGB22384.1| tyrosine recombinase XerD [Desulfotomaculum nigrificans DSM 574] Length = 296 Score = 149 bits (375), Expect = 9e-34, Method: Composition-based stats. Identities = 44/265 (16%), Positives = 94/265 (35%), Gaps = 26/265 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTK-------HIRSGVESRKHTPSSAIQFL 137 LA N+ S+ Q + I H+ +S K P++ + L Sbjct: 16 RGLAQNTLASYRIDLSQYLSHLKKQGVTAIDQANRNHVLTHLYKLQKSGKA-PATISRHL 74 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS----FWSEGSQPR 193 +++ +++ + V +P +++E PK + T +++ S G + + Sbjct: 75 AALKHFYRFLLADGVVTEDPTVNLESPKLGQRLPQVLTTAEVEALLSQPQLADPAGLRDK 134 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLA------ 246 E + +G+R S+ ++H++ ++ I+ K + L + Sbjct: 135 AMLELIYATGIRVSEMVTLDIEHVELDMGYIRCFGKGSKERIIPLGAVAAHYVREYLARS 194 Query: 247 -----MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299 F+N +++ F K A +A +NK + H +R AT + Sbjct: 195 RVKLTKGKTEHRALFVNAQGKRLTRQGFWKILKKYAREANINKHITPHTLRHSFATHLLE 254 Query: 300 AGATAHELMATYGWKTVDQAETYTK 324 GA + G + + YT Sbjct: 255 NGADLRSVQEMLGHADISTTQIYTH 279 >gi|37527425|ref|NP_930769.1| site-specific tyrosine recombinase XerD [Photorhabdus luminescens subsp. laumondii TTO1] gi|36786860|emb|CAE15925.1| Integrase/recombinase xerD [Photorhabdus luminescens subsp. laumondii TTO1] Length = 303 Score = 149 bits (375), Expect = 9e-34, Method: Composition-based stats. Identities = 51/284 (17%), Positives = 102/284 (35%), Gaps = 27/284 (9%) Query: 74 LISEYRKSAHW--GSLAVNSRISFE---SYFDQIIRKSGD--FDYRKITTKHIRSGVESR 126 LI ++ A W LA N+ S+ D + G + I + Sbjct: 12 LIEQFL-DAIWLEHDLAENTLASYRLDLQALDNWLIHHGHNLLSVQTIDLHSFLAERVDG 70 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF- 185 + SS+ + L++MR LF + R++ +P + PK + +++ ++ + Sbjct: 71 GYKASSSARLLSAMRQLFLYFYREKMREDDPTALLSAPKLPKRLPKDLSEKQVEDLLNAP 130 Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT-------- 234 + + E L GLR S+ + + ++ G Sbjct: 131 CTDQPVELRDKAMLEVLYACGLRVSELVGLTLSDVSLRQGVVRVIGKGNKERLVPLGEEA 190 Query: 235 VELPDGFMKLLAMTPIGKETF---FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHG 288 + + +++ + + T F +N ++M F K A AG++ S H Sbjct: 191 IYWLENYLEYGRVGLLNGATLDVLFPSNRGRQMTRQTFWYRIKHYALLAGIDTGRLSPHV 250 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRL 331 +R AT + GA + G + + YT A +R++L Sbjct: 251 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLKL 294 >gi|169797492|ref|YP_001715285.1| site-specific tyrosine recombinase [Acinetobacter baumannii AYE] gi|213155694|ref|YP_002317739.1| tyrosine recombinase XerD [Acinetobacter baumannii AB0057] gi|215484928|ref|YP_002327167.1| tyrosine recombinase XerD [Acinetobacter baumannii AB307-0294] gi|260556384|ref|ZP_05828603.1| tyrosine recombinase XerD [Acinetobacter baumannii ATCC 19606] gi|294838164|ref|ZP_06782847.1| site-specific tyrosine recombinase [Acinetobacter sp. 6013113] gi|294857848|ref|ZP_06795617.1| site-specific tyrosine recombinase [Acinetobacter sp. 6013150] gi|301346533|ref|ZP_07227274.1| site-specific tyrosine recombinase [Acinetobacter baumannii AB056] gi|301512500|ref|ZP_07237737.1| site-specific tyrosine recombinase [Acinetobacter baumannii AB058] gi|301594843|ref|ZP_07239851.1| site-specific tyrosine recombinase [Acinetobacter baumannii AB059] gi|169150419|emb|CAM88316.1| site-specific tyrosine recombinase [Acinetobacter baumannii AYE] gi|213054854|gb|ACJ39756.1| tyrosine recombinase XerD [Acinetobacter baumannii AB0057] gi|213986144|gb|ACJ56443.1| tyrosine recombinase XerD [Acinetobacter baumannii AB307-0294] gi|260410439|gb|EEX03738.1| tyrosine recombinase XerD [Acinetobacter baumannii ATCC 19606] Length = 306 Score = 148 bits (374), Expect = 1e-33, Method: Composition-based stats. Identities = 54/294 (18%), Positives = 105/294 (35%), Gaps = 20/294 (6%) Query: 55 TPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF---DQIIRKSGDFDY 111 K+ I SP + P L +L +R +++ ++R ++ S ++ +K+ D+ Sbjct: 2 INKKPRIPSPVQIPEHLSFL-QGFRDYLVAQTVSPHTRNAYLSDLIQCSELHKKNRLPDW 60 Query: 112 RKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171 + + +P S + L+++R +K+ Q+ + NP + PK Sbjct: 61 TSDDISDVLIELTKVGKSPRSIARCLSALRQFYKFLREQKLRSDNPVATHHSPKIGRALP 120 Query: 172 RPWTKEDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-T 226 + ++ED++ G + R FE L GLR S+ ++ + ++ T Sbjct: 121 KDLSEEDVEALIQAPDITTALGLRDRAMFEVLYACGLRVSELLNLRLELINLKQGYLRIT 180 Query: 227 QKTGTIITVELPDGFMKLLAMT---------PIGKETFFINNDKQKMNATQFSIWFKAKA 277 K V L + + F+ M+ F K A Sbjct: 181 GKGNKERLVPLGQYACDWVERYLNEARPQLYKSSTDYLFLTQHGGIMSRQNFWYAIKRYA 240 Query: 278 TKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 +A + S H +R AT + GA + G + + YT A Sbjct: 241 LQANIQAELSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQVR 294 >gi|296157219|ref|ZP_06840055.1| tyrosine recombinase XerD [Burkholderia sp. Ch1-1] gi|295892555|gb|EFG72337.1| tyrosine recombinase XerD [Burkholderia sp. Ch1-1] Length = 311 Score = 148 bits (374), Expect = 1e-33, Method: Composition-based stats. Identities = 49/287 (17%), Positives = 89/287 (31%), Gaps = 25/287 (8%) Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG--- 122 ++ L+ N+ ++ + T Sbjct: 18 ASSASIDAFCDALWLE---HGLSRNTLDAYRRDLRLFCEWLAQSRNASLDTASEADLNAY 74 Query: 123 -VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 +K +SA + L+ R + WAVR+ I+P + + K+ T+ ++ Sbjct: 75 SAARQKDKSTSANRRLSVFRRYYSWAVREHRTKIDPTVRIRSAKQPPRFPSTLTEAQVEA 134 Query: 182 FKSF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-IITVE 236 G + R E + SGLR ++ + N ++ G+ + Sbjct: 135 LLGAPDVDTPLGLRDRTMLELMYASGLRVTELVTLKTVEVGLNEGVVRVMGKGSKERLIP 194 Query: 237 LPDGFMKLLAM----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-- 284 + + + F+ + + M QF K A AGVN Sbjct: 195 FGEEAHGWIERYLREARPVLLGARATDALFVTSRAEGMTRQQFWNIIKRHAAAAGVNAPL 254 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 S H +R AT + GA + G + + YT A R RL Sbjct: 255 SPHTLRHAFATHLLNHGADLRVVQLLLGHTDISTTQIYTHVA-RERL 300 >gi|220904455|ref|YP_002479767.1| tyrosine recombinase XerD [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219868754|gb|ACL49089.1| tyrosine recombinase XerD [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 310 Score = 148 bits (374), Expect = 1e-33, Method: Composition-based stats. Identities = 52/271 (19%), Positives = 101/271 (37%), Gaps = 26/271 (9%) Query: 85 GSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKH-----IRSGVESRKHTPSSAIQF 136 L+ + S+ + ++ + + + +R++T + + Sbjct: 29 RGLSPQTVASYGQDLENFFLFRQELAQGEAVSPQPDEQEIFLYLAWLRARQNTGRTLARR 88 Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQP 192 L+++R F +AV++ + NP ++ PK ++++M+ + G + Sbjct: 89 LSALRAFFDFAVQENAIKNNPAQLLDNPKLPQHLPEVLSRDEMESLLARPDLRDRGGQRD 148 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLL------ 245 R E L +GLR S+ C + L ++ K V L D +L Sbjct: 149 RCILELLYAAGLRVSELCDLCLPDLDLQRGLVRVFGKGAKERLVPLHDLMQNMLENYIRD 208 Query: 246 ---AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300 A +P G + F+N + + K A +AG+ + S H R AT + Sbjct: 209 WRPAFSPTGNQ-LFVNRSGRALTRQYIWKMVKKYALEAGIRRPVSPHTFRHSFATHLLEG 267 Query: 301 GATAHELMATYGWKTVDQAETYTK-GADRIR 330 GA + G + E YT A+R+R Sbjct: 268 GADLRAVQLLLGHADISATEIYTHVQAERLR 298 >gi|226311968|ref|YP_002771862.1| tyrosine recombinase [Brevibacillus brevis NBRC 100599] gi|226094916|dbj|BAH43358.1| probable tyrosine recombinase [Brevibacillus brevis NBRC 100599] Length = 295 Score = 148 bits (374), Expect = 1e-33, Method: Composition-based stats. Identities = 45/280 (16%), Positives = 104/280 (37%), Gaps = 30/280 (10%) Query: 72 KWLISEYRKSAHW----GSLAVNSRISFES---YFDQIIRKSGDFDYRKITTKHIRSGVE 124 LI ++ H+ L+ N+ S++ F +++ G T HI + Sbjct: 2 DSLIDQF---IHFLTVEKGLSRNTLESYQRDMVAFTSYLQEQGVTRVEDSTRTHIIGYLL 58 Query: 125 SRKHTPSSAIQF---LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 + + + S+R +++ +R +Y+ +P + +E PK + + + E++++ Sbjct: 59 VLREKGRATATLSRNMASIRAFYQFLIRDKYIDKDPSIHLETPKIEKRLPKVLSVEEVER 118 Query: 182 FKS----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE 236 G + + E L +G+R S+ + ++ +K K + Sbjct: 119 LLESPPVNHPAGLRDKAMLELLYATGIRVSELVNLDSADVNLDMGFVKCLGKGSKERIIP 178 Query: 237 LPDGFMKLLA----------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-- 284 L ++++ + G F+N+ +++ F K A K+ + Sbjct: 179 LGSVAIQMVRHYLQAGRPKMVKGTGDTALFLNHLGKQITRQGFWKIIKRYAQKSNIRAEI 238 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 + H +R AT + GA + G + + YT Sbjct: 239 TPHTLRHSFATHLLENGADLRSVQEMLGHADISTTQIYTH 278 >gi|86131894|ref|ZP_01050491.1| phage integrase family protein [Dokdonia donghaensis MED134] gi|85817716|gb|EAQ38890.1| phage integrase family protein [Dokdonia donghaensis MED134] Length = 299 Score = 148 bits (374), Expect = 1e-33, Method: Composition-based stats. Identities = 45/278 (16%), Positives = 99/278 (35%), Gaps = 27/278 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDF----DYRKITTKHIRSGVE--SRKHTPSSAIQFLT 138 L+ N+ ++ ++ R + +IT + ++ + +++ S + ++ Sbjct: 18 RGLSDNTIDNYARDLKKLTRYLEQLENSINPLQITREDLQEFIYTIAKEVQARSQARVIS 77 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRL 194 ++ F + V ++Y NP +E PK + ++E++ +G + R Sbjct: 78 GLKGFFNYLVFEDYRTDNPIDLIESPKIGRKLPDTLSEEEIDALIDAIDLGKPQGERNRA 137 Query: 195 AFEFLLYSGLRCSDSCRAGVQH--LQNNIFSIKTQKTGTIITVELPD-----------GF 241 E L GLR ++ + + ++ K V + + Sbjct: 138 MLETLYSCGLRVTELISLKLSDLYFEEGFINV-VGKGDKQRFVPISEHTQKYINIYRNEL 196 Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299 + + P + F+N +++ K A KA + K S H R AT Sbjct: 197 RNHIDVKPEHVDILFLNRRGRQLTRAMIFTIIKDLAIKADIKKNISPHTFRHSFATHLLQ 256 Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 GA + G +++ E Y DR L + ++ Sbjct: 257 NGADLRSIQQMLGHESITTTEIYMH-VDRNDLAREMAK 293 >gi|313884218|ref|ZP_07817984.1| tyrosine recombinase XerD [Eremococcus coleocola ACS-139-V-Col8] gi|312620665|gb|EFR32088.1| tyrosine recombinase XerD [Eremococcus coleocola ACS-139-V-Col8] Length = 301 Score = 148 bits (374), Expect = 1e-33, Method: Composition-based stats. Identities = 48/278 (17%), Positives = 95/278 (34%), Gaps = 28/278 (10%) Query: 75 ISEYRKSA-HW----GSLAVNSRISFESYFDQIIR--KSGDFDY----RKITTKHIRSGV 123 I +Y + L+ N+ ++E + R + + D + + + Sbjct: 7 IDDYLSDFLRFLAIDKGLSQNTIANYELDLKKFFRFCQIQNMDLLSQIDTDLVRLFIASL 66 Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 + S+A + L+S+R F + + + V+ NP +E PK+ + +++ Sbjct: 67 NKAGYAASTAARILSSLRAFFHFLMVEGVVSKNPMALIESPKKARTLPHSLSMAEVEAIL 126 Query: 184 SF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELP 238 + G + R FE L +GLR S+ + L + F K V L Sbjct: 127 AAPNTDTKFGIRDRAMFETLYATGLRVSELANLSLGDLHLDLRFIQTLGKGNKERMVPLG 186 Query: 239 DGFMKLLAM----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SA 286 + + + G + F+ + + AG+ K S Sbjct: 187 EEAVFWIEKYLDQVRDGWLPKAGSDYLFLTQRGKAFTRQGIWKTLNKYVSLAGIQKKVSP 246 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R AT + GA + G + + + YT Sbjct: 247 HVLRHSFATHILENGADLRLVQELLGHENISTTQIYTH 284 >gi|317128498|ref|YP_004094780.1| tyrosine recombinase XerD [Bacillus cellulosilyticus DSM 2522] gi|315473446|gb|ADU30049.1| tyrosine recombinase XerD [Bacillus cellulosilyticus DSM 2522] Length = 296 Score = 148 bits (374), Expect = 1e-33, Method: Composition-based stats. Identities = 45/264 (17%), Positives = 98/264 (37%), Gaps = 24/264 (9%) Query: 85 GSLAVNSRISFES----YFDQIIRKSGDFDYRKITTKHIRSGVESRKHT---PSSAIQFL 137 L+ N+ ++ Y I D +I I + K P++ + + Sbjct: 16 RGLSKNTTEAYNRDLTAYIQYIESHENKKDVNEINRPAIMQYLYFLKDNGRAPTTITRNI 75 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK----SFWSEGSQPR 193 +S+R ++ +R+ + +P + + RPK++ + + + +++ + + + Sbjct: 76 SSIRAFHQFLLRERLSSSDPTIHISRPKQEKKLPKILSTTEVEALISASVKNPALNIRNK 135 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAM----- 247 E L +G+R S+ C+ + L ++ I+ K + + + K L Sbjct: 136 AMLEVLYATGIRVSELCQLSLSDLHLDMGFIRCIGKGNKERIIPIGNVATKALETYLQKS 195 Query: 248 -----TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300 F+N+ KM+ F K A +A + K + H +R AT + Sbjct: 196 RPTLLKKQAHSILFVNHHGNKMSRQGFWKIIKLLAKEANIKKELTPHTLRHSFATHLLEN 255 Query: 301 GATAHELMATYGWKTVDQAETYTK 324 GA + G + + YT Sbjct: 256 GADLRAVQEMLGHVDISTTQIYTH 279 >gi|251791941|ref|YP_003006661.1| site-specific tyrosine recombinase XerD [Aggregatibacter aphrophilus NJ8700] gi|247533328|gb|ACS96574.1| tyrosine recombinase XerD [Aggregatibacter aphrophilus NJ8700] Length = 297 Score = 148 bits (373), Expect = 1e-33, Method: Composition-based stats. Identities = 45/270 (16%), Positives = 94/270 (34%), Gaps = 24/270 (8%) Query: 85 GSLAVNSRISFESYFDQIIR-----KSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139 L+ N+ S+ + K + + + + +S + L++ Sbjct: 18 KGLSPNTVQSYRLDLTALCDWLEVHKLSLLTLDAVDLQTFLGERLQQGYKATSTARLLSA 77 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRLA 195 MR LF++ +++Y +P + PK + + T++ + + + + Sbjct: 78 MRKLFQYLYKEKYRTDDPSAVLSSPKLPSRLPKYLTEQQVTDLLNVQSLEQPVELRDKAM 137 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLA-----MTP 249 E L +GLR ++ G + N ++ K V + + + + P Sbjct: 138 LELLYATGLRVTELVTLGTDSINLNQGVVRVIGKGNKERIVPMGEEATHWIKQYILFVRP 197 Query: 250 I-----GKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAG 301 I + F + +M F K A +A ++ S H +R AT + G Sbjct: 198 ILLDGQSSDVLFPSRRGTQMTRQTFWHRIKHYAVRAEIDSDMLSPHVLRHAFATHLVNHG 257 Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRL 331 A + G + + YT A + RL Sbjct: 258 ADLRVVQMLLGHSDLSTTQIYTHVA-KERL 286 >gi|224476610|ref|YP_002634216.1| putative site-specific recombinase XerD [Staphylococcus carnosus subsp. carnosus TM300] gi|222421217|emb|CAL28031.1| putative site-specific recombinase XerD [Staphylococcus carnosus subsp. carnosus TM300] Length = 299 Score = 148 bits (373), Expect = 1e-33, Method: Composition-based stats. Identities = 47/275 (17%), Positives = 102/275 (37%), Gaps = 24/275 (8%) Query: 74 LISEYRKSAH-WGSLAVNSRISFESYFDQ-----IIRKSGDFDY-RKITTKHIRSGVESR 126 +I EY K L+ N+ ++ ++ +++K + D+ + + + Sbjct: 8 VIEEYLKFIQIEKGLSANTIGAYRRDLNKYKEYLVLKKINNIDFIDREIIQQCLGYLHDD 67 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 H+ S +F++++R ++A+R+ Y A +P + +E PK + ED+ Sbjct: 68 GHSAKSIARFISTVRSFHQFALRERYAAKDPTVLIETPKYERRLPDVLDVEDVLALLETP 127 Query: 187 SE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGF 241 G + R E L +G+R ++ V+ + + ++ K + L + Sbjct: 128 DLSKNNGYRDRTILELLYATGMRVTELIHVRVEDVNLIMGFVRVFGKGSKERIIPLGETV 187 Query: 242 MKLLAM----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289 + L + F+N + ++ K KA + K + H + Sbjct: 188 IDYLKKYIETVRPQLLKQTVTDVLFLNLHGKPLSRQGIWKLIKQYGVKANIKKKLTPHSL 247 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 R AT + GA + G + + YT Sbjct: 248 RHSFATHLLENGADLRAVQEMLGHSDISTTQLYTH 282 >gi|163750315|ref|ZP_02157556.1| integrase/recombinase XerD [Shewanella benthica KT99] gi|161329987|gb|EDQ00972.1| integrase/recombinase XerD [Shewanella benthica KT99] Length = 308 Score = 148 bits (373), Expect = 1e-33, Method: Composition-based stats. Identities = 52/276 (18%), Positives = 108/276 (39%), Gaps = 25/276 (9%) Query: 85 GSLAVNSRISFE---SYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT---PSSAIQFLT 138 L+ N+ ++ +FD+ ++K G +++ + IR ++ R +S+ + ++ Sbjct: 30 RGLSDNTLAAYRTDLRHFDRYMQKLG-GGLVQVSQQLIRDYLDVRFDKGFARTSSARLMS 88 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRL 194 S+R + + + ++ + ++P ++ PK + ++ D+ + + R Sbjct: 89 SLRRFYGFLILKKLIQVDPIARIKSPKLARKLPDSLSEADVDILLNEPDLQEPIECRDRA 148 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG--------FMKLL 245 E L +GLR ++ ++ L ++ K G V L + Sbjct: 149 MLELLYATGLRVTELVSLTMEQLSLRQGLVRVVGKGGKERLVPLGEIAVNEVEHYLEGAR 208 Query: 246 AMTPIGK--ETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAG 301 A GK + F + Q M F K A +AG+ + S H +R AT + G Sbjct: 209 AELLKGKLSDVLFPSRRGQMMTRQTFWHRIKLYALRAGIVTHISPHTMRHAFATHLLNHG 268 Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 A + G + + YT A + RL +S Sbjct: 269 ADLRVVQLLLGHSDLSTTQIYTHVA-KARLSQLHSE 303 >gi|327479757|gb|AEA83067.1| site-specific tyrosine recombinase XerD [Pseudomonas stutzeri DSM 4166] Length = 298 Score = 148 bits (373), Expect = 1e-33, Method: Composition-based stats. Identities = 56/288 (19%), Positives = 111/288 (38%), Gaps = 28/288 (9%) Query: 74 LISEYRKSAHW--GSLAVNSRISFESYF---DQIIRKSG---DFDYRKITTKHIRSGVES 125 +I Y A W LA NSR ++ + + +++ G R+I H+ + + Sbjct: 8 VIDRYL-DALWLEKGLADNSREAYRNDLASFNGWLQERGVRLAAAGREIILDHL-AWRLN 65 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + S +FL+ +R +++ +R+ ++++P L V+ P+ + ++ D++ + Sbjct: 66 NGYKARSTARFLSGLRGFYRYLLREGEISLDPTLRVDLPRLGRPLPKALSEADVEALLAA 125 Query: 186 ----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG 240 G + R E L GLR ++ ++ + ++T K V L + Sbjct: 126 PDTGDPLGLRDRAMLEVLYACGLRVTELISLTLEQVSMRQGVLRTFGKGNKERLVPLGEE 185 Query: 241 FMKLLAMTPIGK----------ETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHG 288 + L + F + ++M F K A AG+ S H Sbjct: 186 ALHWLQRYQRDARDQLLAGRPSDVLFPSQRGEQMTRQTFWHRIKLHARVAGIATGISPHT 245 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336 +R AT + GA + G + + YT A R RL ++ Sbjct: 246 LRHAFATHLLNHGADLRTVQMLLGHSDLSTTQIYTHIA-RARLQELHA 292 >gi|50083543|ref|YP_045053.1| site-specific tyrosine recombinase [Acinetobacter sp. ADP1] gi|49529519|emb|CAG67231.1| site-specific tyrosine recombinase [Acinetobacter sp. ADP1] Length = 305 Score = 148 bits (373), Expect = 1e-33, Method: Composition-based stats. Identities = 54/299 (18%), Positives = 104/299 (34%), Gaps = 20/299 (6%) Query: 57 KREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR--KSGDFDYRKI 114 K+ I +P P +L +R S++ ++R ++ S Q + + Sbjct: 4 KKPRIPAPVTIPEQFSFL-QGFRDYLVAQSVSPHTRNAYLSDLIQCAQLVVVPLPQWSSE 62 Query: 115 TTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174 T + + +P S + L+++R FK+ Q+ NP + PK + Sbjct: 63 TISDVLIELTKTGKSPRSIARSLSALRQFFKFLREQKIRDDNPVALHKSPKLGRTLPKDL 122 Query: 175 TKEDMQQFKSFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKT 229 +++D++ G + R E L GLR S+ ++ + ++ T K Sbjct: 123 SEQDVEALIHAPDTNTALGLRDRAMLEVLYACGLRVSELLNLRLELINLKQGYLRITGKG 182 Query: 230 GTIITVELPDGFMKLLAMT---------PIGKETFFINNDKQKMNATQFSIWFKAKATKA 280 V L + + F+ M+ F K A +A Sbjct: 183 NKERLVPLGQMATDWIERYLVESRPQLYKSHTDYLFLTQHGGIMSRQNFWYAIKRYALQA 242 Query: 281 GV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 + S H +R AT + GA + G + + YT A +IR+ + + Sbjct: 243 NILPEMSPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVA-QIRMQQLHEK 300 >gi|195562187|gb|ACG50169.1| putative integrase [Escherichia coli] Length = 329 Score = 148 bits (373), Expect = 1e-33, Method: Composition-based stats. Identities = 54/315 (17%), Positives = 112/315 (35%), Gaps = 30/315 (9%) Query: 24 YFRKGHGRRIRLPYPHES--TFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKS 81 Y+ K G +L + AY + G RK T L ++ S Sbjct: 23 YYWKPGGTTEKLAPADSTKAEVWVAYEKVIEG-----------RKNILTFSQLWKKFLNS 71 Query: 82 AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR-KHTPSSAIQFLTSM 140 + LA ++ + ++ ++ G+ + + I +H+R +++R K + A +SM Sbjct: 72 TDYADLAPRTQKDYLAHEKYLLAVFGEAEAKSIKPEHVRRYMDARGKKSRVQANHEHSSM 131 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP-RLAFEFL 199 +++W ++ +V NPC+ V++ K + R T E+ + + + + P + A E Sbjct: 132 SRVYRWGYQRGFVPGNPCVGVDK-YPKPQRDRYITDEE---YLAIYDCATDPVKAAMEIA 187 Query: 200 LYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL--LAMTPIGKETFFI 257 R SD + + + I+ KTG D L Sbjct: 188 YLCAARVSDVLKMDWNQIMDKGIFIQQGKTGVKQIKAWTDRLHSAVNLCRKSGEDGAVIK 247 Query: 258 NNDKQKMNATQFSIWFKAKATKAG------VNKSAHGVRKFSATISADAGATAHELMATY 311 ++ + F+ ++ A ++ + H + K + + + Sbjct: 248 TMYGERYSYKGFNEAWRKARNAAAEKIGRPLDCTFHDL-KAKGISDYE--GSGRDKQKFS 304 Query: 312 GWKTVDQAETYTKGA 326 G KT Q Y + Sbjct: 305 GHKTESQVLVYDRKV 319 >gi|91785030|ref|YP_560236.1| site-specific tyrosine recombinase XerD [Burkholderia xenovorans LB400] gi|91688984|gb|ABE32184.1| Putative phage integrase/recombinase family protein [Burkholderia xenovorans LB400] Length = 311 Score = 148 bits (373), Expect = 1e-33, Method: Composition-based stats. Identities = 48/287 (16%), Positives = 88/287 (30%), Gaps = 25/287 (8%) Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG--- 122 ++ L+ N+ ++ + T Sbjct: 18 ASSASIDAFCDALWLE---HGLSRNTLDAYRRDLRLFCEWLAQSRNASLDTASEADLNAY 74 Query: 123 -VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 +K +SA + L+ R + WAVR+ ++P + + K+ T+ ++ Sbjct: 75 SAARQKDKSTSANRRLSVFRRYYGWAVREHRAKVDPTVRIRSAKQPPRFPSTLTEAQVEA 134 Query: 182 FKSF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-- 235 G + R E + SGLR ++ + N ++ G+ + Sbjct: 135 LLGAPDVDTPLGLRDRTMLELMYASGLRVTELVTLKTVEVGLNEGVVRVMGKGSKERLIP 194 Query: 236 -------ELPDGFMKLLAMT--PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-- 284 + + + F+ + M QF K A AGVN Sbjct: 195 FGEEAHGWIERYLREARPALLGARATDALFVTGRAEGMTRQQFWNIIKRHAAAAGVNAPL 254 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 S H +R AT + GA + G + + YT A R RL Sbjct: 255 SPHTLRHAFATHLLNHGADLRVVQLLLGHTDISTTQIYTHVA-RERL 300 >gi|197285863|ref|YP_002151735.1| tyrosine recombinase [Proteus mirabilis HI4320] gi|227356364|ref|ZP_03840752.1| tyrosine recombinase [Proteus mirabilis ATCC 29906] gi|34222762|sp|O31206|XERD_PROMI RecName: Full=Tyrosine recombinase xerD gi|2645800|gb|AAB87499.1| site-specific recombinase [Proteus mirabilis] gi|194683350|emb|CAR44057.1| tyrosine recombinase [Proteus mirabilis HI4320] gi|227163474|gb|EEI48395.1| tyrosine recombinase [Proteus mirabilis ATCC 29906] Length = 313 Score = 148 bits (373), Expect = 1e-33, Method: Composition-based stats. Identities = 46/278 (16%), Positives = 96/278 (34%), Gaps = 26/278 (9%) Query: 74 LISEYRKSAHW--GSLAVNSRISFESYFDQIIR-----KSGDFDYRKITTKHIRSGVESR 126 +I ++ S W L+ N+ ++ + + K + + Sbjct: 22 IIEQFLDSI-WLEQGLSANTLSAYRLDLQALSQWLVTQKLNWLSVTTLDLHAFLATRLDE 80 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF- 185 + +SA + L+++R F++ R++ +P + PK + +++ ++ S Sbjct: 81 GYKATSAARLLSTLRRFFQYLYREKLRQDDPSALLSTPKLPKRLPKDLSEQQVENLLSAP 140 Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVEL---- 237 + + E L GLR S+ + + ++ K V L Sbjct: 141 CIDEPIELRDKAMLEVLYACGLRVSELVGLSLSDISLRQGVLRVIGKGDKERLVPLGEEA 200 Query: 238 ---PDGFMKLLAMTPIGKET---FFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHG 288 + +++ + +T F + QKM F K A AG++ S H Sbjct: 201 IYWLEQYLQYGRPALMQGKTDDIVFPSLRGQKMTRQTFWHRIKHYAVIAGIDSEKLSPHV 260 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 +R AT + GA + G + + YT A Sbjct: 261 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA 298 >gi|71064633|ref|YP_263360.1| phage integrase [Psychrobacter arcticus 273-4] gi|71037618|gb|AAZ17926.1| probable phage integrase [Psychrobacter arcticus 273-4] Length = 312 Score = 148 bits (373), Expect = 1e-33, Method: Composition-based stats. Identities = 50/277 (18%), Positives = 94/277 (33%), Gaps = 24/277 (8%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR---SGVESRKHT 129 ++E+R++ LA +R ++ + + + + + S + T Sbjct: 22 AYMTEFRQAMLARGLATRTRNAYVRDL-RSCELTNHAALTRWQPEDVLCCLSILTQDGKT 80 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS-- 187 P + + L+S+R + W + NPC ++ PK + + D+ + Sbjct: 81 PRTQARMLSSLRQFYLWMIASNLREDNPCERIKSPKLGRPLPKDLAEADVDNLLAAPDSS 140 Query: 188 --EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVEL----PDG 240 G + + E L GLR S+ ++ + N ++ T K V L D Sbjct: 141 TALGLRDKAMLEVLYACGLRVSELVNLSLEQVNLNSGWLQITGKGNKTRLVPLGEYASDA 200 Query: 241 FMKLL---------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289 L + + F+ M F K A A ++K S H + Sbjct: 201 LEDYLTHGRGDLIAHLKAGNCQAVFLTAQGGYMTRQNFWYLLKKYAKVASIDKALSPHTL 260 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 R AT + GA + G + + YT A Sbjct: 261 RHAFATHLLNHGADLRSVQLLLGHSNLSTTQIYTHVA 297 >gi|307730818|ref|YP_003908042.1| tyrosine recombinase XerD [Burkholderia sp. CCGE1003] gi|307585353|gb|ADN58751.1| tyrosine recombinase XerD [Burkholderia sp. CCGE1003] Length = 314 Score = 148 bits (373), Expect = 1e-33, Method: Composition-based stats. Identities = 49/287 (17%), Positives = 89/287 (31%), Gaps = 25/287 (8%) Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE- 124 +L L+ N+ ++ + T Sbjct: 21 ASSASLDAFCDALWLE---HGLSRNTLDAYRRDLRLFSEWLAQSRNASLDTASEADLNAY 77 Query: 125 ---SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 +K +SA + L+ R + WAVR+ ++P L + K+ ++ ++ Sbjct: 78 SAVRQKDKSTSANRRLSVFRRYYGWAVREHRAQVDPTLRIRSAKQPPRFPSTLSEAQVEA 137 Query: 182 FKSF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-IITVE 236 G + R E + SGLR ++ + N ++ G+ + Sbjct: 138 LLGAPDIDTPLGLRDRTMLELMYASGLRVTELVTLKTVEVGLNEGVVRVMGKGSKERLIP 197 Query: 237 LPDGFMKLLAM----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-- 284 + + + F+ N + M QF K A AGV+ Sbjct: 198 FGEEAHGWIERYLRDARPALLGARAADALFVTNRAEGMTRQQFWNIIKRHAAAAGVHAPL 257 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 S H +R AT + GA + G + + YT A R RL Sbjct: 258 SPHTLRHAFATHLLNHGADLRVVQLLLGHTDISTTQIYTHVA-RERL 303 >gi|254000090|ref|YP_003052153.1| tyrosine recombinase XerD [Methylovorus sp. SIP3-4] gi|253986769|gb|ACT51626.1| tyrosine recombinase XerD [Methylovorus sp. SIP3-4] Length = 298 Score = 148 bits (373), Expect = 1e-33, Method: Composition-based stats. Identities = 49/268 (18%), Positives = 93/268 (34%), Gaps = 23/268 (8%) Query: 86 SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK-----HTPSSAIQFLTSM 140 LA N+ S+ + + + P S + + S+ Sbjct: 21 GLARNTLESYRRDLALFADWLWSEHAKLLNQADQGDLQQYLAFRFPTSKPRSVSRLIASL 80 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRLAF 196 R +++ +R+ V+++P L ++ PK + ++++ + G + R Sbjct: 81 RRFYRYGLREGQVSVDPTLLIDTPKLPRSLPKSLNEDEVVALLNAPDIAQAIGLRDRAML 140 Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT-VELPDGFMKLLAMTPIGK--- 252 E L GLR S+ + N ++ G+ V L + + L Sbjct: 141 ETLYACGLRVSELVGLRYTEVSLNEGVVRVTGKGSKTRLVPLGEESVDWLLRYVREGRPQ 200 Query: 253 -------ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGAT 303 ++ F+ + M F K A +AG++K S H +R AT + GA Sbjct: 201 ILQQRVSDSLFVTQRGEAMTRQAFWYLIKRYALQAGIHKPLSPHVLRHAFATHLLNHGAD 260 Query: 304 AHELMATYGWKTVDQAETYTKGADRIRL 331 + G + + YT A R RL Sbjct: 261 LRVVQMLLGHSDISTTQIYTHVA-RERL 287 >gi|188534907|ref|YP_001908704.1| Tyrosine recombinase XerD [Erwinia tasmaniensis Et1/99] gi|188029949|emb|CAO97833.1| Tyrosine recombinase XerD [Erwinia tasmaniensis Et1/99] Length = 297 Score = 148 bits (373), Expect = 1e-33, Method: Composition-based stats. Identities = 49/284 (17%), Positives = 102/284 (35%), Gaps = 27/284 (9%) Query: 73 WLISEYRKSAHW--GSLAVNSRISFESYFDQIIR-----KSGDFDYRKITTKHIRSGVES 125 LI ++ A W +LA N+ S+ + + + I + + Sbjct: 5 DLIEQFL-DALWIERNLAQNTVASYRLDLRSLCDWLACQPLSLLNAQAIDLRAFLAQRLE 63 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS- 184 + SS+ + L++MR LF++ R++ +P + PK + ++ +++ Sbjct: 64 GGYKASSSARLLSAMRRLFQYLYREKLREDDPSALLSSPKLPQRLPKDLSEAQVERLLQS 123 Query: 185 ---FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG 240 + + E L +GLR ++ + + ++ K V + + Sbjct: 124 PCLEQPIELRDKAMLELLYATGLRVTELVGLTLSDISLRQGVVRVLGKGNKERLVPMGEE 183 Query: 241 FMKLLAMTPIGKETFFIN----------NDKQKMNATQFSIWFKAKATKAGVN---KSAH 287 + + + +N N ++M F K AT AG++ S H Sbjct: 184 AVHWIEQFIEYGRPWLLNGQTLDVLFPSNRAKQMTRQTFWHRIKHYATLAGIDSDKLSPH 243 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIR 330 +R AT + GA + G + + YT A +R+R Sbjct: 244 VLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLR 287 >gi|187925186|ref|YP_001896828.1| site-specific tyrosine recombinase XerD [Burkholderia phytofirmans PsJN] gi|187716380|gb|ACD17604.1| tyrosine recombinase XerD [Burkholderia phytofirmans PsJN] Length = 311 Score = 148 bits (373), Expect = 2e-33, Method: Composition-based stats. Identities = 48/287 (16%), Positives = 89/287 (31%), Gaps = 25/287 (8%) Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG--- 122 ++ L+ N+ ++ + T Sbjct: 18 ASSASIDAFCDALWLE---HGLSRNTLDAYRRDLRLFCEWLAQSRNASLDTASEADLNAY 74 Query: 123 -VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 RK +SA + L+ R + WAVR+ ++P + + K+ ++ ++ Sbjct: 75 SAARRKDKSTSANRRLSVFRRYYGWAVREHRTKVDPTVRIRSAKQPPRFPSTLSEAQVEA 134 Query: 182 FKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-IITVE 236 G + R E + SGLR ++ + N ++ G+ + Sbjct: 135 LLGAPDINTALGLRDRTMLELMYASGLRVTELVTLKTVEVGLNEGVVRVMGKGSKERLIP 194 Query: 237 LPDGFMKLLAM----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-- 284 + + + F+ N + M QF K A AGV+ Sbjct: 195 FGEEAHSWIERYLREARPALLGARATDALFVTNRAEGMTRQQFWNIIKRHAVVAGVHAPL 254 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 S H +R AT + GA + G + + YT A R RL Sbjct: 255 SPHTLRHAFATHLLNHGADLRVVQLLLGHTDISTTQIYTHVA-RERL 300 >gi|322515725|ref|ZP_08068691.1| tyrosine recombinase XerD [Actinobacillus ureae ATCC 25976] gi|322118197|gb|EFX90503.1| tyrosine recombinase XerD [Actinobacillus ureae ATCC 25976] Length = 297 Score = 148 bits (373), Expect = 2e-33, Method: Composition-based stats. Identities = 44/285 (15%), Positives = 96/285 (33%), Gaps = 24/285 (8%) Query: 70 TLKWLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGVE 124 +L +I ++ + L+ N+ S+ ++ + Sbjct: 3 SLDPIIEQFLDTLWQEHGLSENTSASYRLDLERFSEWLPTPKAFLTLDHFDLQSFLGERL 62 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----Q 180 + + +S+ + L+ +R F++ + Y +P L++ P++ T + ++E + Sbjct: 63 EQGYKATSSARMLSCLRKFFRFLYIENYRQDDPTLTLISPRKPTNLPKSLSEEQVMDLLD 122 Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPD 239 + + + E L +GLR ++ +L ++ K V + + Sbjct: 123 CPNTLDPVELRDKAMLELLYATGLRVTELVSLTTDNLNLRQGVMRIVGKGNKERLVPIGE 182 Query: 240 GFMKLLAMTPIGKETFFINN----------DKQKMNATQFSIWFKAKATKAGVN---KSA 286 + +NN +M F K A AG++ S Sbjct: 183 EASYWIQEFFQYGRAILLNNIQSDVVFPSRRGLQMTRQTFWHRIKHYAVLAGIDSEKLSP 242 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 H +R AT + GA + G + + YT A + RL Sbjct: 243 HVLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVA-KARL 286 >gi|239996020|ref|ZP_04716544.1| tyrosine recombinase [Alteromonas macleodii ATCC 27126] Length = 308 Score = 148 bits (373), Expect = 2e-33, Method: Composition-based stats. Identities = 47/286 (16%), Positives = 104/286 (36%), Gaps = 31/286 (10%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKI------TTKHIRSGVESRKHTPSSAIQFLT 138 L+ +++ S+ + ++ S + + I + + + + S + L+ Sbjct: 30 KGLSDHTQQSYRTDLTKLAIFSNNQGVKDIAVLTTEQLQDYLAYRHDKGLSTRSTQRALS 89 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ----QFKSFWSEGSQPRL 194 ++R F + + ++ +P ++ PK +++ ++ + + + Sbjct: 90 AIRAFFVFLISKQVRVDSPVSALSNPKTPKALPSSLSEQQVEDLLNAPLTDDPIECRDKS 149 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFMKLLA-----MT 248 E L +GLR S+ + + ++ G V L + ++ L Sbjct: 150 MLEVLYATGLRVSELIGLTMDQISLQQGVVRVVGKGNKERLVPLGEDAIEWLLTYIKTAR 209 Query: 249 PI----GKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGA 302 PI + F++ QKM F K A KAG+ + S H +R AT + GA Sbjct: 210 PILASKASDVVFLSKRGQKMTRQTFWHRIKYYAVKAGIEQHLSPHTLRHAFATHLLNHGA 269 Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348 + G + + YT A + R+ +++ S P Sbjct: 270 DLRVVQMLLGHSDLSTTQIYTHVA---------TERLQTLIHSHHP 306 >gi|258620859|ref|ZP_05715893.1| Tyrosine recombinase xerD [Vibrio mimicus VM573] gi|258586247|gb|EEW10962.1| Tyrosine recombinase xerD [Vibrio mimicus VM573] Length = 302 Score = 147 bits (372), Expect = 2e-33, Method: Composition-based stats. Identities = 47/280 (16%), Positives = 107/280 (38%), Gaps = 26/280 (9%) Query: 72 KWLISEYRKSAHW--GSLAVNSRISFESYFDQIIRKSGDFDYRKITT-----KHIRSGVE 124 + L+ ++ A W LA N+ S+ + +++ Y+ + ++ + Sbjct: 9 QGLVEQFL-DAMWLERGLAENTVASYRNDLSKLLEWMAQHQYQLDFISFSGLQEYQNWLS 67 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 + + P+S + L+++R LF++ R++ A +P + PK T + T+ ++ S Sbjct: 68 EQNYKPTSKARMLSAIRRLFQYLHREKVRADDPSALLISPKLPTRLPKDLTEAQVEALLS 127 Query: 185 F----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPD 239 + + E L +GLR ++ ++++ ++ K G V + + Sbjct: 128 APDPQTPIELRDKAMLELLYATGLRVTELVSLTMENMSLRQGVVRVIGKGGKERLVPMGE 187 Query: 240 GFMKLLAMTPIGKETFFI----------NNDKQKMNATQFSIWFKAKATKAGVN---KSA 286 ++ + + + ++ Q+M F K A A ++ S Sbjct: 188 NAIEWIETFLQQGRSLLLGEQTSDIVFPSSRGQQMTRQTFWHRIKHYAVIAEIDVELLSP 247 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 H +R AT + GA + G + + YT A Sbjct: 248 HVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVA 287 >gi|281421506|ref|ZP_06252505.1| integrase/recombinase XerD [Prevotella copri DSM 18205] gi|281404578|gb|EFB35258.1| integrase/recombinase XerD [Prevotella copri DSM 18205] Length = 318 Score = 147 bits (372), Expect = 2e-33, Method: Composition-based stats. Identities = 49/290 (16%), Positives = 106/290 (36%), Gaps = 25/290 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDY--RKITTKHIR---SGVESRK 127 +I Y + + + N+ ++ + ++ + + ++ + + + + R Sbjct: 5 IIKNYMRYLKLGRNFSKNTLDAYYHDLNFLLEYADKNNLVLTEMKLEDLENFSASLHDRG 64 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + S + L+ +R +++ V +Y+ +P + P+ + E++ ++ Sbjct: 65 VSARSQARILSGIRSFYRYLVLDDYIKDDPTELLVSPQIGKHLPEYLSVEEVDMLEAAID 124 Query: 188 ----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFM 242 EG + + E L GLR S+ + I+ K V + + Sbjct: 125 LEKWEGQRNKAIIEILFSCGLRVSELVNLKKSDVFEEEKFIRVIGKGNKERIVPISGKAL 184 Query: 243 K----------LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290 K L+ + P ++ F+N + I K A AG+ K S H +R Sbjct: 185 KEINLWYIDRNLMTIKPGEEDYVFLNRRGAHLTRNMILIMIKNAAYDAGIKKTISPHTLR 244 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK--GADRIRLGIKNSRR 338 AT GA + A G + + E YT +D R +++ R Sbjct: 245 HSFATALLKGGADLRVIQALLGHEDIGTTEIYTHLETSDLRRAILEHHPR 294 >gi|83590344|ref|YP_430353.1| tyrosine recombinase XerD subunit [Moorella thermoacetica ATCC 39073] gi|83573258|gb|ABC19810.1| tyrosine recombinase XerD subunit [Moorella thermoacetica ATCC 39073] Length = 295 Score = 147 bits (372), Expect = 2e-33, Method: Composition-based stats. Identities = 44/265 (16%), Positives = 100/265 (37%), Gaps = 27/265 (10%) Query: 85 GSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFLT 138 LA N+ S+ S Q + +G R +T + + + +P++ Q L Sbjct: 16 RGLAENTLASYNSDLQQFLLYLEGAGVKSPRDVTRGLLVAYLVKMQQDGRSPATISQHLA 75 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF----KSFWSEGSQPRL 194 +++ + + +R+ V +P +E P++ + + T ++++ ++ G + + Sbjct: 76 ALKSFYHFLLRERLVESDPTADLESPRQSKKLPQVLTVAEVEKLLNQPRTDTPAGLRDKA 135 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-------------ITVELPDGF 241 E L +GLR S+ V + ++ G+ + + +G Sbjct: 136 MLELLYATGLRVSELVSLNVDQVNLEGEFVRCLGKGSKERVVPMGQVACFYVRTYIENGR 195 Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299 KL+ + F+N+ ++++ K A + K + H +R AT + Sbjct: 196 GKLIKRAT--EPALFVNHHGRRLSRQGCWKILKGYVRAANLKKDITPHTLRHSFATHLLE 253 Query: 300 AGATAHELMATYGWKTVDQAETYTK 324 GA + G + + YT Sbjct: 254 NGADLRSVQELLGHADIGTTQIYTH 278 >gi|127511704|ref|YP_001092901.1| tyrosine recombinase XerD [Shewanella loihica PV-4] gi|126636999|gb|ABO22642.1| tyrosine recombinase XerD [Shewanella loihica PV-4] Length = 303 Score = 147 bits (372), Expect = 2e-33, Method: Composition-based stats. Identities = 51/283 (18%), Positives = 102/283 (36%), Gaps = 24/283 (8%) Query: 74 LISEYRKSA-HWGSLAVNSRISFES---YFDQIIRKSGD--FDYRKITTKHIRSGVESRK 127 LI + L+ ++ ++ S +FD+ + K G + + + Sbjct: 13 LIEPFLDDLWAAKGLSDHTLQAYRSDLSHFDRYLNKQGSSLLSTSQAEVRDYLALRVEHG 72 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-- 185 +S+ + L+S+R +K+ + ++ + ++P ++ PK + ++ D+ + S Sbjct: 73 FAKTSSARLLSSLRRFYKYLLAKKLIEVDPMAMIKPPKLARKLPDALSEADVDRLLSEPN 132 Query: 186 --WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVE------ 236 ++ R E L SGLR S+ + + ++ K V Sbjct: 133 REDPVEARDRAMLELLYASGLRVSELVGLTLDQMSLRQGVVRIVGKGSKERLVPFGEQAG 192 Query: 237 --LPDGFMKLLAMTPIGK--ETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVR 290 + D GK + F + M F K A +AG+ + S H +R Sbjct: 193 AEIEDYLKAARFELLKGKASDVVFPSKRGNMMTRQTFWHRIKLYAQRAGIAVHLSPHTLR 252 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 AT + GA + G + + YT A + RL Sbjct: 253 HAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVA-KARLAQ 294 >gi|323527182|ref|YP_004229335.1| tyrosine recombinase XerD [Burkholderia sp. CCGE1001] gi|323384184|gb|ADX56275.1| tyrosine recombinase XerD [Burkholderia sp. CCGE1001] Length = 314 Score = 147 bits (372), Expect = 2e-33, Method: Composition-based stats. Identities = 45/304 (14%), Positives = 91/304 (29%), Gaps = 24/304 (7%) Query: 54 STPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK 113 ++ + + ++ L+ N+ ++ Sbjct: 9 ASAQLSHSPLFTASSASIDAFCDALWLE---HGLSRNTLDAYRRDLRLFSEWLAQTRSAS 65 Query: 114 ITTKHIRSG----VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169 + T +K +SA + L+ R + WAVR+ ++P L + K+ Sbjct: 66 LDTASEADLNAYSAARQKDKSTSANRRLSVFRRYYGWAVREHRAKVDPTLRIRSAKQPPR 125 Query: 170 GIRPWTKEDMQQFKSF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK 225 ++ ++ G + R E + SGLR ++ + N ++ Sbjct: 126 FPSTLSEAQVEALLGAPDIETPLGLRDRTMLELMYASGLRVTELVTLKTVEVGLNEGVVR 185 Query: 226 TQKTGT-IITVELPDGFMKLLAM----------TPIGKETFFINNDKQKMNATQFSIWFK 274 G+ + + + + F+ N + M QF K Sbjct: 186 VMGKGSKERLIPFGEEAHGWIERYLRDARPALLGARAADALFVTNRAEGMTRQQFWNIIK 245 Query: 275 AKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 A AGV+ S H +R AT + GA + G + + YT A Sbjct: 246 RHAAAAGVHAPLSPHTLRHAFATHLLNHGADLRVVQLLLGHTDISTTQIYTHVARERLKS 305 Query: 333 IKNS 336 + Sbjct: 306 LHAM 309 >gi|298505931|gb|ADI84654.1| integrase/recombinase XerD [Geobacter sulfurreducens KN400] Length = 295 Score = 147 bits (372), Expect = 2e-33, Method: Composition-based stats. Identities = 46/263 (17%), Positives = 94/263 (35%), Gaps = 22/263 (8%) Query: 89 VNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT---PSSAIQFLTSMRVLFK 145 + Y + + +G D I H+ + K + S + L+++R+ + Sbjct: 24 ESYARDLSRYLGYVEQHAG-GDPAAIRPLHVADFLAHLKESGLGARSRARALSAVRMFHR 82 Query: 146 WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAFEFLLY 201 + + + Y NP +E P+ + + T +++ + + R E L Sbjct: 83 FLLVEGYAETNPTSIIEAPRVLAKLPQVLTGREVEMLLAAPAGDAPIEVRDRAMLELLYA 142 Query: 202 SGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDGFMKLLAMTPIGKET------ 254 +GLR S+ + + + + K V + + + + T Sbjct: 143 TGLRVSELVGLRTRDVNTSAGYLMTVGKGEKERLVPMGESACAAVVLYLSSARTQLGRGG 202 Query: 255 ----FFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELM 308 F++ ++M F K ++ +AG+ K S H +R AT + GA + Sbjct: 203 ESPFLFLSRLGERMTRQAFWNIIKKRSRQAGILKGISPHTLRHSFATHLLENGADLRSVQ 262 Query: 309 ATYGWKTVDQAETYTKGADRIRL 331 A G + + YT R RL Sbjct: 263 AMLGHADLSTTQIYTH-VTRERL 284 >gi|262166461|ref|ZP_06034198.1| tyrosine recombinase XerD [Vibrio mimicus VM223] gi|262170635|ref|ZP_06038313.1| tyrosine recombinase XerD [Vibrio mimicus MB-451] gi|261891711|gb|EEY37697.1| tyrosine recombinase XerD [Vibrio mimicus MB-451] gi|262026177|gb|EEY44845.1| tyrosine recombinase XerD [Vibrio mimicus VM223] Length = 302 Score = 147 bits (372), Expect = 2e-33, Method: Composition-based stats. Identities = 49/280 (17%), Positives = 107/280 (38%), Gaps = 26/280 (9%) Query: 72 KWLISEYRKSAHW--GSLAVNSRISFESYFDQIIRKSGDFDYRKITT-----KHIRSGVE 124 + L+ ++ A W LA N+ S+ + +++ YR + +S + Sbjct: 9 QGLVEQFL-DAMWLERGLAENTVASYRNDLSKLLEWMAQHQYRLDFISFSGLQEYQSWLS 67 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 + + P+S + L+++R LF++ R++ A +P + PK T + T+ ++ S Sbjct: 68 EQNYKPTSKARMLSAIRRLFQYLHREKVRADDPSALLISPKLPTRLPKDLTEAQVEALLS 127 Query: 185 F----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPD 239 + + E L +GLR ++ ++++ ++ K G V + + Sbjct: 128 APDPQTPIELRDKAMLELLYATGLRVTELVSLTMENMSLRQGVVRVIGKGGKERLVPMGE 187 Query: 240 GFMKLLAMTPIGKETFFI----------NNDKQKMNATQFSIWFKAKATKAGVN---KSA 286 ++ + + + ++ Q+M F K A A ++ S Sbjct: 188 NAIEWIETFLQQGRSLLLGEQTSDIVFPSSRGQQMTRQTFWHRIKHYAVIAEIDVELLSP 247 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 H +R AT + GA + G + + YT A Sbjct: 248 HVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVA 287 >gi|78222639|ref|YP_384386.1| tyrosine recombinase XerD subunit [Geobacter metallireducens GS-15] gi|78193894|gb|ABB31661.1| tyrosine recombinase XerD subunit [Geobacter metallireducens GS-15] Length = 295 Score = 147 bits (372), Expect = 2e-33, Method: Composition-based stats. Identities = 50/270 (18%), Positives = 94/270 (34%), Gaps = 24/270 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFD---YRKITTKHIRSGVESRKH---TPSSAIQFLT 138 LA NS S+ + + + + + + K P S + L+ Sbjct: 16 KGLAKNSLDSYGRDMIRYLDFLEKRNCGEPSAVRPVDVADFLAHLKDCGLAPRSRARALS 75 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRL 194 ++R+ ++ + + Y NP +E PK + + +++ + S + R Sbjct: 76 AVRMFHRFLLVEGYAEANPTAIIEAPKTLAKLPQILAGREVEALLAAPGSDSAQDMRDRA 135 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPI--- 250 E L +GLR S+ G++ + + K G V + + ++ Sbjct: 136 MLELLYATGLRVSELVGLGLRDVNVTAGYLMAFGKGGKERLVPMGESACAAVSRYLAEAR 195 Query: 251 -------GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAG 301 F+ +M F K +A +AG+ K S H +R AT + G Sbjct: 196 PEMDRNGDNAYLFLTRLGDRMTRQAFWNIIKKRAIEAGIRKTISPHTLRHSFATHLLENG 255 Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRL 331 A + A G + + YT R RL Sbjct: 256 ADLRSVQAMLGHADLATTQIYTH-VTRERL 284 >gi|123443576|ref|YP_001007549.1| site-specific tyrosine recombinase XerD [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122090537|emb|CAL13406.1| integrase/recombinase [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 299 Score = 147 bits (372), Expect = 2e-33, Method: Composition-based stats. Identities = 54/284 (19%), Positives = 108/284 (38%), Gaps = 27/284 (9%) Query: 74 LISEYRKSAHW--GSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGVESR--- 126 LI ++ A W +LA N+ S+ + + D D + ++ ++S + R Sbjct: 8 LIEQFL-DALWLERNLAENTLASYRLDLHALSGWLEHHDSDLLRAGSQDLQSFLAERIEG 66 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF- 185 + +S+ + L++MR LF++ R++ +P + PK + ++ ++ + Sbjct: 67 GYKATSSARLLSAMRRLFQYLYREKLREDDPTALLSSPKLPQRLPKDLSEAQVEALLNSP 126 Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGF 241 + + E L +GLR S+ + + ++ K V L + Sbjct: 127 NVDIPLELRDKAMLEVLYATGLRVSELVGLTISDVSLRQGVVRVIGKGNKERLVPLGEEA 186 Query: 242 MKLLAMTPIGKETFFIN----------NDKQKMNATQFSIWFKAKATKAGVN---KSAHG 288 + + + IN N Q+M F K A AG++ S H Sbjct: 187 VYWIENYMEHGRPWLINGQSLDVLFPSNRSQQMTRQTFWHRIKHYAILAGIDSERLSPHV 246 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRL 331 +R AT + GA + G + + YT A +R++L Sbjct: 247 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLKL 290 >gi|114566153|ref|YP_753307.1| recombinase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114337088|gb|ABI67936.1| tyrosine recombinase XerD subunit [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 296 Score = 147 bits (371), Expect = 2e-33, Method: Composition-based stats. Identities = 49/275 (17%), Positives = 99/275 (36%), Gaps = 25/275 (9%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQI-------IRKSGDFDYRKITTKHIRSGVESR 126 I ++ ++ LA NSRI+++ + R + K + + Sbjct: 5 IEDFISYLNFEKGLAANSRIAYKRDLLKFQQFLQENSRALSPQNISKHDIMAFLAWQLDQ 64 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS-- 184 SS + L+S++ +K+ + + + NP +E PK K + + + E++ + Sbjct: 65 GAAHSSIARSLSSIKSYYKFLILEGELDKNPSSDLETPKIKRKLPQVLSIEEVDKLMEQP 124 Query: 185 --FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELP--- 238 G + R E + +G+R S+ V+ L ++ G + + Sbjct: 125 NPVVPLGIRDRAMLELMYGTGIRVSELLSLQVEDLNPTAGFLRCMGKGRKERIIPVNQTS 184 Query: 239 -DGFMKLLAMTPIG------KETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289 D + LA + T F+N + ++ F KA + K + H + Sbjct: 185 IDWVQRYLARVRNSLVKNPLERTLFLNARGRPLSRQGFFKILGNYVEKAELEKEVTPHTL 244 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 R AT + GA + G + + YT Sbjct: 245 RHSFATHLLENGADLRAVQEMLGHADISTTQIYTH 279 >gi|88803246|ref|ZP_01118772.1| putative tyrosine recombinase [Polaribacter irgensii 23-P] gi|88780812|gb|EAR11991.1| putative tyrosine recombinase [Polaribacter irgensii 23-P] Length = 298 Score = 147 bits (371), Expect = 2e-33, Method: Composition-based stats. Identities = 52/279 (18%), Positives = 100/279 (35%), Gaps = 25/279 (8%) Query: 71 LKWLISEYRKSAH-WGSLAVNSRISFESYFDQII----RKSGDFDYRKITTKHIRSGVE- 124 K I EY+ L+ N+ S+ +++ + I + I+ + Sbjct: 3 WKHAIKEYQMYLKIERGLSKNTVDSYTKDIEKLCLFFCKNKITISPININSDLIKQFIYD 62 Query: 125 -SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 +++ P S + ++ +R F + + +EY +NP +E PK + +++D+ Sbjct: 63 IAKQINPRSQARIISGLRSFFDYLIFEEYRVLNPTDLLETPKIGKKLPDTLSQDDIDALF 122 Query: 184 SF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELP 238 S +G + R E + GLR S+ V L I+ K V + Sbjct: 123 SAIDLSHPQGERNRTLLETMYSCGLRVSELITLKVSDLFFEEGFIRVLGKGNKERYVPIH 182 Query: 239 DGFMKLLAMTPIG-----------KETFFINNDKQKMNATQFSIWFKAKATKAGVNK--S 285 +++ ++T F+N + + I K A K + K S Sbjct: 183 KDAESYISIYKRTIRTHIEPKKGFEDTLFLNRRGKGLTRQMIFIILKDLAFKIDLKKKIS 242 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R AT GA + G +++ E Y Sbjct: 243 PHTLRHSFATHLLQNGADLRVIQQILGHESITTTEIYVH 281 >gi|257877980|ref|ZP_05657633.1| phage integrase [Enterococcus faecium 1,230,933] gi|257881234|ref|ZP_05660887.1| phage integrase [Enterococcus faecium 1,231,502] gi|257884899|ref|ZP_05664552.1| phage integrase [Enterococcus faecium 1,231,501] gi|257889821|ref|ZP_05669474.1| phage integrase [Enterococcus faecium 1,231,410] gi|258616535|ref|ZP_05714305.1| integrase/recombinase XerD, putative [Enterococcus faecium DO] gi|260559031|ref|ZP_05831217.1| phage integrase [Enterococcus faecium C68] gi|261207565|ref|ZP_05922250.1| phage integrase [Enterococcus faecium TC 6] gi|289565077|ref|ZP_06445530.1| tyrosine recombinase XerD [Enterococcus faecium D344SRF] gi|293556722|ref|ZP_06675285.1| tyrosine recombinase XerD [Enterococcus faecium E1039] gi|293563380|ref|ZP_06677829.1| tyrosine recombinase XerD [Enterococcus faecium E1162] gi|293568038|ref|ZP_06679376.1| tyrosine recombinase XerD [Enterococcus faecium E1071] gi|294614864|ref|ZP_06694759.1| tyrosine recombinase XerD [Enterococcus faecium E1636] gi|294618694|ref|ZP_06698228.1| tyrosine recombinase XerD [Enterococcus faecium E1679] gi|294622985|ref|ZP_06701875.1| tyrosine recombinase XerD [Enterococcus faecium U0317] gi|257812208|gb|EEV40966.1| phage integrase [Enterococcus faecium 1,230,933] gi|257816892|gb|EEV44220.1| phage integrase [Enterococcus faecium 1,231,502] gi|257820737|gb|EEV47885.1| phage integrase [Enterococcus faecium 1,231,501] gi|257826181|gb|EEV52807.1| phage integrase [Enterococcus faecium 1,231,410] gi|260074788|gb|EEW63104.1| phage integrase [Enterococcus faecium C68] gi|260077948|gb|EEW65654.1| phage integrase [Enterococcus faecium TC 6] gi|289163084|gb|EFD10931.1| tyrosine recombinase XerD [Enterococcus faecium D344SRF] gi|291589259|gb|EFF21069.1| tyrosine recombinase XerD [Enterococcus faecium E1071] gi|291592326|gb|EFF23940.1| tyrosine recombinase XerD [Enterococcus faecium E1636] gi|291595077|gb|EFF26420.1| tyrosine recombinase XerD [Enterococcus faecium E1679] gi|291597613|gb|EFF28774.1| tyrosine recombinase XerD [Enterococcus faecium U0317] gi|291601054|gb|EFF31343.1| tyrosine recombinase XerD [Enterococcus faecium E1039] gi|291604641|gb|EFF34126.1| tyrosine recombinase XerD [Enterococcus faecium E1162] Length = 295 Score = 147 bits (371), Expect = 2e-33, Method: Composition-based stats. Identities = 45/275 (16%), Positives = 103/275 (37%), Gaps = 26/275 (9%) Query: 75 ISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRK-------ITTKHIRSGVESR 126 I++Y + L+ N+R S+E +Q + + + + + E + Sbjct: 5 INDYLHYLNIERGLSANTRQSYERDLEQYLHFLQEQKIASWQDVDRFLVIRFLEKLHEEK 64 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 K T ++ + ++S+R ++ ++ +P ++ PK+ + T ++++ Sbjct: 65 KAT-ATVTRMISSLRRFHQFLRQERITDHDPMQHIDTPKKAQKLPSTLTLTEVEKLIEAP 123 Query: 187 S----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGF 241 G + R E + +G+R S+ + L ++ ++T K + L D Sbjct: 124 DTTKTLGIRDRAILEVMYATGMRVSELIGLKLGDLHLSLGLVQTVGKGDKERIIPLGDYA 183 Query: 242 MKLLAM----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289 ++ L + F+NN + ++ K +AG+ K + H + Sbjct: 184 IQWLERYLDEARPLLVKDASEMHVFVNNHGKGLSRQGIWKNLKQLVREAGIYKEVTPHTL 243 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 R AT + GA + G + + YT Sbjct: 244 RHSFATHLLENGADLRTVQELLGHADISTTQIYTH 278 >gi|314939481|ref|ZP_07846715.1| tyrosine recombinase XerD [Enterococcus faecium TX0133a04] gi|314941112|ref|ZP_07848010.1| tyrosine recombinase XerD [Enterococcus faecium TX0133C] gi|314948724|ref|ZP_07852096.1| tyrosine recombinase XerD [Enterococcus faecium TX0082] gi|314951697|ref|ZP_07854740.1| tyrosine recombinase XerD [Enterococcus faecium TX0133A] gi|314993956|ref|ZP_07859283.1| tyrosine recombinase XerD [Enterococcus faecium TX0133B] gi|314997520|ref|ZP_07862465.1| tyrosine recombinase XerD [Enterococcus faecium TX0133a01] gi|313588431|gb|EFR67276.1| tyrosine recombinase XerD [Enterococcus faecium TX0133a01] gi|313591558|gb|EFR70403.1| tyrosine recombinase XerD [Enterococcus faecium TX0133B] gi|313596161|gb|EFR75006.1| tyrosine recombinase XerD [Enterococcus faecium TX0133A] gi|313600113|gb|EFR78956.1| tyrosine recombinase XerD [Enterococcus faecium TX0133C] gi|313641283|gb|EFS05863.1| tyrosine recombinase XerD [Enterococcus faecium TX0133a04] gi|313644790|gb|EFS09370.1| tyrosine recombinase XerD [Enterococcus faecium TX0082] Length = 300 Score = 147 bits (371), Expect = 2e-33, Method: Composition-based stats. Identities = 45/275 (16%), Positives = 103/275 (37%), Gaps = 26/275 (9%) Query: 75 ISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRK-------ITTKHIRSGVESR 126 I++Y + L+ N+R S+E +Q + + + + + E + Sbjct: 10 INDYLHYLNIERGLSANTRQSYERDLEQYLHFLQEQKIASWQDVDRFLVIRFLEKLHEEK 69 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 K T ++ + ++S+R ++ ++ +P ++ PK+ + T ++++ Sbjct: 70 KAT-ATVTRMISSLRRFHQFLRQERITDHDPMQHIDTPKKAQKLPSTLTLTEVEKLIEAP 128 Query: 187 S----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGF 241 G + R E + +G+R S+ + L ++ ++T K + L D Sbjct: 129 DTTKTLGIRDRAILEVMYATGMRVSELIGLKLGDLHLSLGLVQTVGKGDKERIIPLGDYA 188 Query: 242 MKLLAM----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289 ++ L + F+NN + ++ K +AG+ K + H + Sbjct: 189 IQWLERYLDEARPLLVKDASEMHVFVNNHGKGLSRQGIWKNLKQLVREAGIYKEVTPHTL 248 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 R AT + GA + G + + YT Sbjct: 249 RHSFATHLLENGADLRTVQELLGHADISTTQIYTH 283 >gi|325299547|ref|YP_004259464.1| Tyrosine recombinase xerC [Bacteroides salanitronis DSM 18170] gi|324319100|gb|ADY36991.1| Tyrosine recombinase xerC [Bacteroides salanitronis DSM 18170] Length = 316 Score = 147 bits (371), Expect = 2e-33, Method: Composition-based stats. Identities = 61/305 (20%), Positives = 116/305 (38%), Gaps = 24/305 (7%) Query: 56 PKREYINSPRKKPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRK-----SGDF 109 P++ K+ T + ++ +YR+ SL+ N+ ++ + D+++ G Sbjct: 2 PRKNSAQRYEKEMKTYEKILLKYRQYLKLERSLSGNTIDAYLTDLDKLLAYLTLEGIGIT 61 Query: 110 DYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169 D ++ +G+ P S + L+ +R F++ +Y+ +P +E P+ Sbjct: 62 DVTLQDLENFSAGLHDIGIHPRSQARILSGIRSFFRFLTLDDYIRQDPSELLESPQIGKH 121 Query: 170 GIRPWTKEDMQQF----KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK 225 T E++ EG + R E L GLR S+ C + L + IK Sbjct: 122 LPDVLTVEEIDALIGAIDETTPEGQRNRAILETLYSCGLRVSELCNLKLSDLYLDEGFIK 181 Query: 226 TQKTGTIIT-VELPDGFMKLLA----------MTPIGKETFFINNDKQKMNATQFSIWFK 274 + G+ V + + L + P ++ FI+ + ++ K Sbjct: 182 VEGKGSKQRLVPISPRAVNELKNYFTERGYAKIKPGYEDFVFISRFGKNISRIMVFHIIK 241 Query: 275 AKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 A + G+ K S H R AT + GA + A G +++ E YT DR L Sbjct: 242 ELAERIGLKKTISPHTFRHSFATHLLEGGANLRAIQAMLGHESIGTTEIYTH-IDRSMLR 300 Query: 333 IKNSR 337 + Sbjct: 301 QEIIE 305 >gi|294648993|ref|ZP_06726441.1| site-specific tyrosine recombinase XerD [Acinetobacter haemolyticus ATCC 19194] gi|292825128|gb|EFF83883.1| site-specific tyrosine recombinase XerD [Acinetobacter haemolyticus ATCC 19194] Length = 333 Score = 147 bits (371), Expect = 2e-33, Method: Composition-based stats. Identities = 55/299 (18%), Positives = 107/299 (35%), Gaps = 20/299 (6%) Query: 57 KREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF---DQIIRKSGDFDYRK 113 K+ I + P L +L +R +++ ++R ++ S ++ R + + Sbjct: 31 KKPRIPTAVSIPENLSFL-QGFRDYLVAQTVSPHTRNAYLSDLIQCSELHRTASLPQWSS 89 Query: 114 ITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173 + + +P S + L+++R +K+ Q+ NP S PK + Sbjct: 90 EDIGDVLIELTKAGKSPRSIARCLSALRQFYKFLREQKLREDNPVASHHSPKIGRALPKD 149 Query: 174 WTKEDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQK 228 +++D++ + G + R FE L GLR S+ ++ + ++ T K Sbjct: 150 LSEQDVEALINAPDISTTLGLRDRAMFEVLYACGLRVSELLNLRLELINLKQGFVRITGK 209 Query: 229 TGTIITVELP----DGFMKLLAMT-----PIGKETFFINNDKQKMNATQFSIWFKAKATK 279 V L D K LA + + F+ M+ F K A + Sbjct: 210 GNKERLVPLGQYACDWIEKYLAESRPQLYKSNTDYLFLTQHGGIMSRQNFWYAIKRYALQ 269 Query: 280 AGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336 A + S H +R AT + GA + G + + YT A + + Sbjct: 270 ANIQAELSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQHRMQALHHQ 328 >gi|218194771|gb|EEC77198.1| hypothetical protein OsI_15703 [Oryza sativa Indica Group] Length = 752 Score = 147 bits (371), Expect = 3e-33, Method: Composition-based stats. Identities = 61/361 (16%), Positives = 113/361 (31%), Gaps = 46/361 (12%) Query: 8 PPFVTKERTRHGKIIYYFRKG---HGRRIRLPYPHE-------STFIPAYMSALTGSTPK 57 P + ++ K+ RK R R+ F + Sbjct: 390 PKGLPRDVV--DKVNAGVRKALEDPAVRKRIEDTGSLIVGNTPEQFAEQIKAEFDVYKTV 447 Query: 58 REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD------Y 111 + +P + I L+ N+ ++ + G Sbjct: 448 VQNQKLSLDQPA-IDAFIDALWLED---GLSRNTLAAYRRDLVLYAQWLGQHASDTAGAL 503 Query: 112 RKITTKHIRSGVESRKH--TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169 H+++ +R +SA + LT +R F+WA+R+ +A +P + ++ ++ Sbjct: 504 DATAEHHLKAYFAARHAETRATSANRRLTVLRRYFQWALRERRIAADPTVRLQAARQPLR 563 Query: 170 GIRPWTKEDMQQFK----SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK 225 + + ++ + S G + R E + SGLR ++ H + ++ Sbjct: 564 VPKTLSAAQVEALLQAPDTSTSLGLRDRAMLELMYASGLRVTELVTLKTYHAGLSEGVLR 623 Query: 226 T-QKTGTIITVE------------LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIW 272 K G V L + +LA F+ M F + Sbjct: 624 VMGKGGKERLVPFGEVAAQWMQRYLDEARADILAGQQTDD--LFVTRRGAGMTRAMFWVV 681 Query: 273 FKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 K A AG+ S H +R AT + GA + G + YT A R R Sbjct: 682 VKKHAQAAGITVPLSPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTTIYTHVA-RER 740 Query: 331 L 331 L Sbjct: 741 L 741 >gi|288940120|ref|YP_003442360.1| tyrosine recombinase XerD [Allochromatium vinosum DSM 180] gi|288895492|gb|ADC61328.1| tyrosine recombinase XerD [Allochromatium vinosum DSM 180] Length = 297 Score = 147 bits (371), Expect = 3e-33, Method: Composition-based stats. Identities = 53/276 (19%), Positives = 92/276 (33%), Gaps = 24/276 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTK------HIRSGVESRKHTPSSAIQFLT 138 L+ N+ +++S R + + + + P S+ + L+ Sbjct: 18 RGLSRNTLTAYQSDLRAFAHWLSQERGRTLIAAERADLLDYLARLAKQGRNPRSSARLLS 77 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRL 194 +R ++ R+ + +P VE PK + ++ D++ + G + R Sbjct: 78 CLRQFYQHLRRRGLIEADPSARVEAPKLGRPLPKSLSEADVEALLNAPDTEDARGHRDRT 137 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLA------- 246 E L SGLR S+ + ++ K G V L + L Sbjct: 138 MLEVLYASGLRVSELVNLTPSQVSLTQGVVRILGKGGKERLVPLGEDACNWLRDYVRGPR 197 Query: 247 ---MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAG 301 + + F M F K A AGV K S H +R AT + G Sbjct: 198 FDILGGRASDFLFPTRRSDCMTRQAFWQLIKRYAILAGVAKPLSPHTLRHAFATHLLNHG 257 Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 A + G + + YT A R RL ++R Sbjct: 258 ADLRVVQMLLGHSDLSTTQIYTHVA-RERLKQLHAR 292 >gi|145298066|ref|YP_001140907.1| site-specific integrase/recombinase [Aeromonas salmonicida subsp. salmonicida A449] gi|142850838|gb|ABO89159.1| site-specific integrase/recombinase [Aeromonas salmonicida subsp. salmonicida A449] Length = 303 Score = 147 bits (371), Expect = 3e-33, Method: Composition-based stats. Identities = 43/273 (15%), Positives = 94/273 (34%), Gaps = 22/273 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKI-----TTKHIRSGVESRKHTPSSAIQFLTS 139 L+ N+ S+ S ++ + +H + + SS +FL++ Sbjct: 25 RGLSDNTVSSYRSDLEKFAFWLDGQGRSLLLAGMDDIQHYLAWRVDHQFAASSTARFLSA 84 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195 +R +++ R++ + +P + +E PK + ++ +++ + + Sbjct: 85 LRRFYQYLNREKLRSDDPTVLLEGPKLPKKLPSDLSEAEVEALLQSPLVDDPLELRDKAM 144 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFMKLLAMTPIGKET 254 E L +GLR S+ +H+ ++ G V + + + L T Sbjct: 145 LELLYATGLRVSELVGLTAEHVSLRQGLVRVVGKGNKERLVPMGEEAVHWLERYYREART 204 Query: 255 FFI----------NNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302 + + + M F K A +AG+ S H +R AT + GA Sbjct: 205 LLLGGTSSDVVFPSKQARMMTRQTFWHRIKLYAQRAGIRGELSPHTLRHAFATHLLNHGA 264 Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335 + G + + YT A+ + Sbjct: 265 DLRVVQMLLGHADLSTTQIYTHVANERLKALHG 297 >gi|30063432|ref|NP_837603.1| putative integrase for prophage CP-933U [Shigella flexneri 2a str. 2457T] gi|56480016|ref|NP_707880.2| putative integrase for prophage CP-933U [Shigella flexneri 2a str. 301] gi|30041685|gb|AAP17412.1| putative integrase for prophage CP-933U [Shigella flexneri 2a str. 2457T] gi|56383567|gb|AAN43587.2| putative integrase for prophage CP-933U [Shigella flexneri 2a str. 301] Length = 281 Score = 147 bits (370), Expect = 3e-33, Method: Composition-based stats. Identities = 47/266 (17%), Positives = 89/266 (33%), Gaps = 15/266 (5%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH- 128 T L ++ SA++ L+ ++ + + +++ G I +HIR ++ R Sbjct: 2 TFGRLWEKFLASAYYSDLSPRTQKDYLQHQKKLLAVFGKVPADSIKPEHIRRYMDKRGEQ 61 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 + + A +SM ++ W + YV NPC V + K K T ++ Q S Sbjct: 62 SKTQANHEKSSMSRVYSWGYERGYVKANPCAGVSKFKAKNRERYV-TDKEYQAVLSVAPL 120 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT 248 +A E R SD + + N+ I+ KTG + Sbjct: 121 --PVFIAMEIAYLCAARVSDVLSLKWEQIGNDGIFIQQGKTGKKQIKAWSPRLQAAIEKA 178 Query: 249 P--IGKETFFINNDKQKMNATQFSIWFKAKATKAG------VNKSAHGVRKFSATISADA 300 N + F+ + +AG + + H + K + Sbjct: 179 KQLPTSAYVISNQYGNRYMYKGFNEMWVEARNRAGKISGILTDFTFHDL-KAKGISDYE- 236 Query: 301 GATAHELMATYGWKTVDQAETYTKGA 326 ++ + G KT Q Y + Sbjct: 237 -GSSRDKQLFSGHKTEGQVLIYDRKV 261 >gi|331701395|ref|YP_004398354.1| Tyrosine recombinase xerC [Lactobacillus buchneri NRRL B-30929] gi|329128738|gb|AEB73291.1| Tyrosine recombinase xerC [Lactobacillus buchneri NRRL B-30929] Length = 296 Score = 147 bits (370), Expect = 3e-33, Method: Composition-based stats. Identities = 46/274 (16%), Positives = 92/274 (33%), Gaps = 24/274 (8%) Query: 75 ISEYRKSAH-WGSLAVNSRISFESYFD---QIIRKSGD--FDYRKITTKHIRSGVESRKH 128 I +Y L+ N+ S+ K D + ++ + Sbjct: 6 IEDYLHYLRVERGLSDNTIKSYRQDLQEAGAFFDKHAKSIADIDQFVILDYLETLQRQHK 65 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK----S 184 ++ I+ ++++R F++ V+ + +P L V+ PK+ T + Q + Sbjct: 66 ARNTVIRVVSTLRRFFQYLVQFHVIVDDPMLKVDSPKKAQTLPDVLTVAQVNQLLSMPDT 125 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMK 243 G + R E L +GLR S+ + L + ++T K + + D + Sbjct: 126 HKKLGLRDRAILETLYATGLRVSELVNLKLGDLHLPMNLLQTIGKGDKERIIPISDVAID 185 Query: 244 LLAMTP-----------IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290 L E F+N ++ K +AG+ + + H +R Sbjct: 186 WLNQYIQSTRVQLLSGRPNSEFLFLNAHGHQLTRQAIWQMIKKYVNQAGIKRHVTPHTLR 245 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK 324 AT + GA + G + + YT Sbjct: 246 HSFATHLLENGADLRIVQELLGHSDISTTQIYTH 279 >gi|332140209|ref|YP_004425947.1| tyrosine recombinase [Alteromonas macleodii str. 'Deep ecotype'] gi|327550231|gb|AEA96949.1| tyrosine recombinase [Alteromonas macleodii str. 'Deep ecotype'] Length = 308 Score = 147 bits (370), Expect = 3e-33, Method: Composition-based stats. Identities = 45/286 (15%), Positives = 100/286 (34%), Gaps = 31/286 (10%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKI------TTKHIRSGVESRKHTPSSAIQFLT 138 L+ +++ S+ + ++ S + + I + + + + S + L+ Sbjct: 30 KGLSEHTQQSYRTDLSKLAVFSNNQGIKDIAVLSTEQLQDYLAYRHDKGLSTRSTQRALS 89 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRL 194 ++R F + + ++ +P ++ PK +++ ++ + + R Sbjct: 90 AIRAFFVYLISKQIRVDSPVSALSNPKTPKALPASLSEQQVEDLLNAPQTDDPIECRDRS 149 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFMKLLAMTPIGKE 253 E L +GLR S+ + + ++ G V L + ++ L Sbjct: 150 MLEVLYATGLRVSELIGLTMDQISLQQGVVRVVGKGNKERLVPLGEEAIEWLLTYIKTAR 209 Query: 254 TFF---------INNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGA 302 ++ QKM F K A KAG+ + S H +R AT + GA Sbjct: 210 PILATKTSDFVYLSKRGQKMTRQTFWHRIKYYAVKAGIEQHLSPHTLRHAFATHLLNHGA 269 Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348 + G + + YT A + R+ +++ S P Sbjct: 270 DLRVVQMLLGHSDLSTTQIYTHVA---------TERLQTLIHSHHP 306 >gi|251796343|ref|YP_003011074.1| tyrosine recombinase XerD [Paenibacillus sp. JDR-2] gi|247543969|gb|ACT00988.1| tyrosine recombinase XerD [Paenibacillus sp. JDR-2] Length = 296 Score = 147 bits (370), Expect = 3e-33, Method: Composition-based stats. Identities = 41/264 (15%), Positives = 92/264 (34%), Gaps = 24/264 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKSGD---FDYRKITTKHIRSGVESRKHTPSSAI---QFLT 138 +L+ ++ S+ ++ + + H+ + K + + + Sbjct: 16 RALSSSTLESYGRDLQGLLDYLEQQSIANVADVHRHHLSHYLLRLKESGRKTSTVSRHIA 75 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQFKSFWSEGSQPRL 194 S+R F + Y+ +NP + +E PK++ + + E+ ++ + + G + + Sbjct: 76 SIRAFFHYLAVNGYIQLNPAIYIESPKQEKKEPSVLSMENAGLLLETPQPVTAAGKRDKA 135 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFMKLLA------- 246 E L +G+R S+ V + + + I+ +G + L Sbjct: 136 MLELLYATGIRVSELISLNVDSVNSQLNIIRCVGSGMKERIIPFGRMAAAALDDYLQNGR 195 Query: 247 ----MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADA 300 + F+N +M F K A +AG+ + H +R A + Sbjct: 196 AELLRQSEDEPALFLNQLGTRMTRQGFWKMVKKYAKEAGISEEITPHTLRHSFAAHLLEN 255 Query: 301 GATAHELMATYGWKTVDQAETYTK 324 GA + G + + YTK Sbjct: 256 GADLRAVQELLGHADISTTQRYTK 279 >gi|146281579|ref|YP_001171732.1| site-specific tyrosine recombinase XerD [Pseudomonas stutzeri A1501] gi|145569784|gb|ABP78890.1| integrase/recombinase XerD [Pseudomonas stutzeri A1501] Length = 298 Score = 147 bits (370), Expect = 3e-33, Method: Composition-based stats. Identities = 55/288 (19%), Positives = 111/288 (38%), Gaps = 28/288 (9%) Query: 74 LISEYRKSAHW--GSLAVNSRISFESYF---DQIIRKSG---DFDYRKITTKHIRSGVES 125 +I Y A W LA NSR ++ + + +++ G R++ H+ + + Sbjct: 8 VIDRYL-DALWLEKGLADNSREAYRNDLASFNGWLQERGVRLAAAGREVILDHL-AWRLN 65 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + S +FL+ +R +++ +R+ ++++P L V+ P+ + ++ D++ + Sbjct: 66 NGYKARSTARFLSGLRGFYRYLLREGEISLDPTLRVDLPRLGRPLPKALSEADVEALLAA 125 Query: 186 ----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG 240 G + R E L GLR ++ ++ + ++T K V L + Sbjct: 126 PDTGDPLGLRDRAMLEVLYACGLRVTELISLTLEQVSMRQGVLRTFGKGNKERLVPLGEE 185 Query: 241 FMKLLAMTPIGK----------ETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHG 288 + L + F + ++M F K A AG+ S H Sbjct: 186 ALHWLQRYQRDARDQLLAGRPSDVLFPSQRGEQMTRQTFWHRIKLHARGAGIATGISPHT 245 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336 +R AT + GA + G + + YT A R RL ++ Sbjct: 246 LRHAFATHLLNHGADLRTVQMLLGHSDLSTTQIYTHIA-RARLQELHA 292 >gi|300722127|ref|YP_003711410.1| site-specific tyrosine recombinase [Xenorhabdus nematophila ATCC 19061] gi|297628627|emb|CBJ89205.1| site-specific tyrosine recombinase [Xenorhabdus nematophila ATCC 19061] Length = 323 Score = 147 bits (370), Expect = 3e-33, Method: Composition-based stats. Identities = 49/278 (17%), Positives = 95/278 (34%), Gaps = 26/278 (9%) Query: 74 LISEYRKSAHW--GSLAVNSRISFE---SYFDQIIRKSGD--FDYRKITTKHIRSGVESR 126 LI ++ + W LA N+ S+ D + G + I + + Sbjct: 32 LIEQFLDTI-WLEKDLAENTLASYRLDLQALDNWLMNYGHDVLLVQVIELQSFLAERVDG 90 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF- 185 + SS+ + L++MR LF++ R++ +P + PK + +++ ++ + Sbjct: 91 GYKASSSARLLSAMRRLFQYLYREKMREDDPTALLSAPKLPKRLPKDLSEKQVEDLLNTP 150 Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGF 241 + + E L GLR S+ + + ++ G V L + Sbjct: 151 LTDQPIELRDKAMLEVLYACGLRVSELVGLTLSDVSLRQGVVRVVGKGNKERLVPLGEEA 210 Query: 242 MKLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAHG 288 + L + FF + +M F K A A ++ S H Sbjct: 211 VYWLEKYLEYGRPWLLNGAVSDVFFPSKRGTQMTRQTFWHRIKHYAILAEIDAERLSPHV 270 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 +R AT + GA + G + + YT A Sbjct: 271 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA 308 >gi|116494854|ref|YP_806588.1| integrase [Lactobacillus casei ATCC 334] gi|191638361|ref|YP_001987527.1| Tyrosine recombinase xerD [Lactobacillus casei BL23] gi|227535149|ref|ZP_03965198.1| site-specific DNA tyrosine recombinase [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|239631553|ref|ZP_04674584.1| tyrosine recombinase xerD [Lactobacillus paracasei subsp. paracasei 8700:2] gi|301066416|ref|YP_003788439.1| integrase [Lactobacillus casei str. Zhang] gi|116105004|gb|ABJ70146.1| tyrosine recombinase XerD subunit [Lactobacillus casei ATCC 334] gi|190712663|emb|CAQ66669.1| Tyrosine recombinase xerD [Lactobacillus casei BL23] gi|227187194|gb|EEI67261.1| site-specific DNA tyrosine recombinase [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|239526018|gb|EEQ65019.1| tyrosine recombinase xerD [Lactobacillus paracasei subsp. paracasei 8700:2] gi|300438823|gb|ADK18589.1| Integrase [Lactobacillus casei str. Zhang] gi|327382389|gb|AEA53865.1| hypothetical protein LC2W_1532 [Lactobacillus casei LC2W] gi|327385590|gb|AEA57064.1| hypothetical protein LCBD_1567 [Lactobacillus casei BD-II] Length = 293 Score = 147 bits (370), Expect = 3e-33, Method: Composition-based stats. Identities = 45/271 (16%), Positives = 98/271 (36%), Gaps = 23/271 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH--IRSGVESRKHT--PSSAIQFLTSM 140 LA ++ S++ R + I+S ++ + T P+S + ++++ Sbjct: 16 RGLAKATQTSYQQDLITFSAWLAARKRRTFPEEFGTIQSFLKEQNATKAPASVSRMISAL 75 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRLAF 196 R +++ +R+ ++ +P ++ PKR + +++ + G + R F Sbjct: 76 RKFYRFLLREGAISADPMTKIDTPKRAQHLPATLSSQEVDALMAKPDTDKPLGLRDRAIF 135 Query: 197 EFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET 254 E + +GLR S+ + HL N+ + T K V + + + Sbjct: 136 ELMYATGLRVSEVVDLRLDQLHLAMNLLQV-TGKGDKERLVPISPQATQWVDRYLQEARP 194 Query: 255 ----------FFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302 F+N M KA G+ K + H +R AT + GA Sbjct: 195 KLLKRVQPKNVFVNFHGGPMTRQGIWKNLKAYIASIGIEKDVTPHTLRHSFATRLLENGA 254 Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGI 333 + G + + YT +++ + + Sbjct: 255 DLRVVQELLGHSDISTTQIYTHLSNQHLVAV 285 >gi|323161906|gb|EFZ47780.1| phage integrase family protein [Escherichia coli E128010] Length = 281 Score = 146 bits (369), Expect = 4e-33, Method: Composition-based stats. Identities = 47/266 (17%), Positives = 89/266 (33%), Gaps = 15/266 (5%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH- 128 T L ++ SA++ L+ ++ + + +++ G I +HIR ++ R Sbjct: 2 TFGRLWEKFLASAYYSDLSPRTQKDYLQHQKKLLAVFGKVPADSIKPEHIRRYMDKRGEQ 61 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 + + A +SM ++ W + YV NPC V + K K T ++ Q S Sbjct: 62 SKTQANHEKSSMSRVYSWGYERGYVKGNPCAGVSKFKAKNRERYV-TDKEYQAVLSVAPL 120 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT 248 +A E R SD + + N+ I+ KTG + Sbjct: 121 --PVFIAMEIAYLCAARVSDVLSLKWEQIGNDGIFIQQGKTGKKQIKAWSPRLQAAIEKA 178 Query: 249 P--IGKETFFINNDKQKMNATQFSIWFKAKATKAG------VNKSAHGVRKFSATISADA 300 N + F+ + +AG + + H + K + Sbjct: 179 KQLPTSAYVISNQYGNRYMYKGFNEMWVEARNRAGKISGILTDFTFHDL-KAKGISDYE- 236 Query: 301 GATAHELMATYGWKTVDQAETYTKGA 326 ++ + G KT Q Y + Sbjct: 237 -GSSRDKQLFSGHKTEGQVLIYDRKV 261 >gi|296447647|ref|ZP_06889566.1| integrase family protein [Methylosinus trichosporium OB3b] gi|296254853|gb|EFH01961.1| integrase family protein [Methylosinus trichosporium OB3b] Length = 227 Score = 146 bits (369), Expect = 4e-33, Method: Composition-based stats. Identities = 43/222 (19%), Positives = 82/222 (36%), Gaps = 12/222 (5%) Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVE---RPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192 + ++F W + Y+A NP ++ RP+ E RPWT + Sbjct: 1 MKAVLSIIFGWGAERGYLADNPATGIKDIRRPRGAAEPNRPWTDSERHAVLDAAPA--HM 58 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPI-G 251 R A ++ +GL D+ + ++ + + KTG + +P +L P Sbjct: 59 RPAIALMMMTGLGPKDALTLPRNYWRDGEIATRRAKTGEPVFWPVPSPLDDVLKAAPRHD 118 Query: 252 KETFFINNDKQKMNATQFSIWFK------AKATKAGVNKSAHGVRKFSATISADAGATAH 305 T N+ + F ++ + G+ + +G+R A I +AG Sbjct: 119 ALTLCANSAGRPWTLDGFRASWRTLRIKLEEKDAIGLGLTLYGLRHTVAVILREAGHDER 178 Query: 306 ELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347 + G +T++ A Y+KGAD R + ++ Sbjct: 179 TIADALGQRTIEMARHYSKGADLRRKMGGVAVSFGDELNRRR 220 >gi|322419214|ref|YP_004198437.1| tyrosine recombinase XerD [Geobacter sp. M18] gi|320125601|gb|ADW13161.1| tyrosine recombinase XerD [Geobacter sp. M18] Length = 292 Score = 146 bits (369), Expect = 4e-33, Method: Composition-based stats. Identities = 48/267 (17%), Positives = 96/267 (35%), Gaps = 21/267 (7%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH---TPSSAIQFLTSMR 141 A N+ ++ + + G+ + +I + + K P S + L+++R Sbjct: 16 RGAAANTVAAYSRDLTRYLAYLGEREPDQIRPSDVTGYLGKLKGEGIAPRSRARALSALR 75 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRLAFE 197 +L ++ VR+ + +NP VE PK + + +++ + + + + E Sbjct: 76 MLHRFLVREGHCEVNPTAIVEAPKGLLKLPTVLSSREVEALLASPLDTGAIELRDKAMLE 135 Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLL----------A 246 L +GLR S+ + + T K + + + + + Sbjct: 136 LLYATGLRVSELVGLKTGDVNIAAGYLMTIGKGDKERLIPMGESACRAVGEYLEKARQEL 195 Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATA 304 + FI+ + M F K +A +AGV S H +R AT + GA Sbjct: 196 LKQKSSPLLFISRLGEGMTRQAFWNIIKKRALQAGVRSGISPHTLRHSFATHLLENGADL 255 Query: 305 HELMATYGWKTVDQAETYTKGADRIRL 331 + G + + YT R RL Sbjct: 256 RSVQIMLGHADLSTTQIYTH-VTRERL 281 >gi|294840865|ref|ZP_06785548.1| site-specific tyrosine recombinase [Acinetobacter sp. 6014059] gi|323516350|gb|ADX90731.1| site-specific recombinase XerD [Acinetobacter baumannii TCDC-AB0715] Length = 306 Score = 146 bits (369), Expect = 4e-33, Method: Composition-based stats. Identities = 54/294 (18%), Positives = 104/294 (35%), Gaps = 20/294 (6%) Query: 55 TPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF---DQIIRKSGDFDY 111 K+ I SP + P L +L +R +++ ++R ++ S ++ +K+ D+ Sbjct: 2 INKKPRIPSPVQIPEHLSFL-QGFRDYLVAQTVSPHTRNAYLSDLIQCSELHKKNRLPDW 60 Query: 112 RKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171 + + +P S + L+++R +K+ Q+ + NP + PK Sbjct: 61 TSDDISDVLIELTKVGKSPRSIARCLSALRQFYKFLREQKLRSDNPVATHHSPKIGRALP 120 Query: 172 RPWTKEDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-T 226 + +ED++ G + R FE L GLR S+ ++ + ++ T Sbjct: 121 KDLCEEDVEALIQAPDITTALGLRDRAMFEVLYACGLRVSELLNLRLELINLKQGYLRIT 180 Query: 227 QKTGTIITVELPDGFMKLLAMT---------PIGKETFFINNDKQKMNATQFSIWFKAKA 277 K V L + + F+ M+ F K A Sbjct: 181 GKGNKERLVPLGQYACDWVERYLNEARPQFYKSSTDYLFLTQHGGIMSRQNFWYAIKRYA 240 Query: 278 TKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 +A + S H +R AT + GA + G + + YT A Sbjct: 241 LQANIQAELSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQVR 294 >gi|114561848|ref|YP_749361.1| tyrosine recombinase XerD [Shewanella frigidimarina NCIMB 400] gi|114333141|gb|ABI70523.1| tyrosine recombinase XerD [Shewanella frigidimarina NCIMB 400] Length = 305 Score = 146 bits (369), Expect = 4e-33, Method: Composition-based stats. Identities = 51/288 (17%), Positives = 109/288 (37%), Gaps = 26/288 (9%) Query: 74 LISEYRKSA-HWGSLAVNSRISFESYF---DQIIRKSGDFDYRKITTKHIRSGVESRKHT 129 LI+++ L+ N+ +S+ + ++ I G D ++ +R + R Sbjct: 15 LINQFLDDLWSTNGLSDNTLVSYRTDLQNAERYILTKG-KDLLQVDQALLRDYLAERFDK 73 Query: 130 P---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF- 185 SS + L+S+R + + + ++ ++ +P ++ PK + ++ + S Sbjct: 74 QFAKSSTARLLSSLRRFYAYLLVKQKISQDPTALIKSPKLVRQLPDTLSEAQIDNLLSEP 133 Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPD-- 239 + + E L +GLR ++ ++ + ++ K G V L + Sbjct: 134 NIDDPIEHRDKAMLELLYATGLRVTELVSLTMEQISLRQGLVRVMGKGGKERLVPLGELA 193 Query: 240 --------GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289 F + ++ + F + Q M F K A +AG+ S H + Sbjct: 194 ITAVEQYIKFARAELLSMKQSDVLFPSRRGQMMTRQTFWHRIKLYAARAGIQCHLSPHTL 253 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 R AT + GA + G + + YT A ++RL +S+ Sbjct: 254 RHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVA-KVRLQQLHSQ 300 >gi|238763216|ref|ZP_04624181.1| Tyrosine recombinase xerD [Yersinia kristensenii ATCC 33638] gi|238698489|gb|EEP91241.1| Tyrosine recombinase xerD [Yersinia kristensenii ATCC 33638] Length = 299 Score = 146 bits (369), Expect = 4e-33, Method: Composition-based stats. Identities = 54/284 (19%), Positives = 107/284 (37%), Gaps = 27/284 (9%) Query: 74 LISEYRKSAHW--GSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGVESR--- 126 LI ++ A W +LA N+ S+ + + D D + ++ ++S + R Sbjct: 8 LIEQFL-DALWLERNLAENTLASYRLDLHALSGWLEHHDSDLLRAGSQDLQSFLAERIEG 66 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF- 185 + +S+ + L++MR LF++ R++ +P + PK + ++ + + Sbjct: 67 GYKATSSARLLSAMRRLFQYLYREKLREDDPTALLSSPKLPQRLPKDLSEAQVDALLNSP 126 Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGF 241 + + E L +GLR S+ + + ++ K V L + Sbjct: 127 NVDIPLELRDKAMLEVLYATGLRVSELVGLTISDVSLRQGVVRVIGKGNKERLVPLGEEA 186 Query: 242 MKLLAMTPIGKETFFIN----------NDKQKMNATQFSIWFKAKATKAGVN---KSAHG 288 + + + IN N Q+M F K A AG++ S H Sbjct: 187 VYWIENYMEHGRPWLINGQSLDVLFPSNRSQQMTRQTFWHRIKHYAILAGIDSERLSPHV 246 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRL 331 +R AT + GA + G + + YT A +R++L Sbjct: 247 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLKL 290 >gi|262404730|ref|ZP_06081285.1| site-specific recombinase XerD [Vibrio sp. RC586] gi|262349762|gb|EEY98900.1| site-specific recombinase XerD [Vibrio sp. RC586] Length = 302 Score = 146 bits (369), Expect = 4e-33, Method: Composition-based stats. Identities = 46/279 (16%), Positives = 106/279 (37%), Gaps = 24/279 (8%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITT-----KHIRSGVES 125 + L+ ++ + + LA N+ S+ + +++ YR + + + Sbjct: 9 QGLVEQFLDAMWFERGLAENTVASYRNDLSKLLGWMAQHQYRLDFISFSGLQEYQIWLTE 68 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + + P+S + L+++R LF++ R++ A +P + PK T + T+ ++ S Sbjct: 69 QDYKPTSKARMLSAIRRLFQYLHREKVRADDPSALLISPKLPTRLPKDLTEAQVEALLSA 128 Query: 186 ----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG 240 + + E L +GLR ++ ++++ ++ K G V + + Sbjct: 129 PDPQTPIELRDKAMLELLYATGLRVTELVSLTMENMSLRQGVVRVIGKGGKERLVPMGEN 188 Query: 241 FMKLLAMTPIGKETFFI----------NNDKQKMNATQFSIWFKAKATKAGVN---KSAH 287 ++ + + + ++ Q+M F K A A ++ S H Sbjct: 189 AVEWIETFLQQGRSLLLGEQTSDIVFPSSRGQQMTRQTFWHRIKHYAVIAEIDVEQLSPH 248 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 +R AT + GA + G + + YT A Sbjct: 249 VLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVA 287 >gi|120555190|ref|YP_959541.1| tyrosine recombinase XerD [Marinobacter aquaeolei VT8] gi|120325039|gb|ABM19354.1| tyrosine recombinase XerD subunit [Marinobacter aquaeolei VT8] Length = 301 Score = 146 bits (369), Expect = 4e-33, Method: Composition-based stats. Identities = 51/272 (18%), Positives = 96/272 (35%), Gaps = 25/272 (9%) Query: 86 SLAVNSRISFESYFDQII----RKSGDFDYRKITTKHIRSGVES---RKHTPSSAIQFLT 138 L +R ++ S ++ +++G R + + + S+A + L+ Sbjct: 22 GLGEKTRQAYASDLYRLSGWLEQQAGAPTLRSARRTDLLAWMSRGLSDGLKTSTAARRLS 81 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRL 194 +R +++ +R+ +A +P L ++ P+ T+ D++ + + R Sbjct: 82 GVRRFYRFLLREGIIAEDPTLRIDSPRLPRRLPDTLTEADVESLLTEPDPELPVELRDRA 141 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLL---AMTPI 250 E L GLR S+ V + ++ K G V L + + L Sbjct: 142 MLEILYGCGLRVSELTGLTVDQVNLRQGVVRIQGKGGKERLVPLGEEAVDWLLQYMRQAR 201 Query: 251 G-------KETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAG 301 G + F N M F + A + G+ K S H +R AT + G Sbjct: 202 GELLRGKTSDALFPGNRGTAMTRQAFWYRIRHYAIRCGITKHLSPHTLRHAFATHLLNHG 261 Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 A + G + + YT A R RL Sbjct: 262 ADLRVVQMLLGHSDLSTTQIYTHVA-RQRLQD 292 >gi|85859051|ref|YP_461253.1| integrase/recombinase [Syntrophus aciditrophicus SB] gi|85722142|gb|ABC77085.1| integrase/recombinase [Syntrophus aciditrophicus SB] Length = 296 Score = 146 bits (369), Expect = 4e-33, Method: Composition-based stats. Identities = 48/276 (17%), Positives = 92/276 (33%), Gaps = 24/276 (8%) Query: 73 WLISEYRKSAH-WGSLAVNSRISFESYFDQ---IIRKSGDFDYRKITTKHIRSGVESRKH 128 LI EY + N+ ++ + +I++ G + +I+ + + K Sbjct: 4 QLIDEYLNYLTVEKGASHNTLEAYGRDLSRYSGLIQERGIKEIHEISPDDVIYYMAELKR 63 Query: 129 T---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS- 184 +S + L ++R +K+ +R++ + NP +E K + E+M Q S Sbjct: 64 KGLSANSINRSLAALRGFYKFLLREKKIEQNPVAEIELAKVWMRLPDTLSHEEMDQLLSQ 123 Query: 185 ---FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDG 240 + E + +GLR S+ + + + Q G V + Sbjct: 124 PGVRTDSAIRDTAMLELMYATGLRVSELISLTTGSINWQVGYLVVQGKGNKERIVPIGQV 183 Query: 241 FMKLLAM----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHG 288 + + F+N Q M F + A KAG+ K H Sbjct: 184 AYEHVRRYFDEVRPKCIRGAQTNVLFLNKSGQGMTRQGFWKLVRKYAVKAGLQKKVHPHT 243 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 R A+ + GA + G + + YT Sbjct: 244 FRHSFASHLLEGGADLRSVQMMLGHADISTTQIYTH 279 >gi|69248064|ref|ZP_00604609.1| Phage integrase:Phage integrase, N-terminal SAM-like [Enterococcus faecium DO] gi|68194583|gb|EAN09074.1| Phage integrase:Phage integrase, N-terminal SAM-like [Enterococcus faecium DO] Length = 284 Score = 146 bits (369), Expect = 4e-33, Method: Composition-based stats. Identities = 43/264 (16%), Positives = 98/264 (37%), Gaps = 25/264 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRK-------ITTKHIRSGVESRKHTPSSAIQFL 137 L+ N+R S+E +Q + + + + + E +K T ++ + + Sbjct: 5 RGLSANTRQSYERDLEQYLHFLQEQKIASWQDVDRFLVIRFLEKLHEEKKAT-ATVTRMI 63 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPR 193 +S+R ++ ++ +P ++ PK+ + T ++++ G + R Sbjct: 64 SSLRRFHQFLRQERITDHDPMQHIDTPKKAQKLPSTLTLTEVEKLIEAPDTTKTLGIRDR 123 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAM----- 247 E + +G+R S+ + L ++ ++T K + L D ++ L Sbjct: 124 AILEVMYATGMRVSELIGLKLGDLHLSLGLVQTVGKGDKERIIPLGDYAIQWLERYLDEA 183 Query: 248 -----TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300 + F+NN + ++ K +AG+ K + H +R AT + Sbjct: 184 RPLLVKDASEMHVFVNNHGKGLSRQGIWKNLKQLVREAGIYKEVTPHTLRHSFATHLLEN 243 Query: 301 GATAHELMATYGWKTVDQAETYTK 324 GA + G + + YT Sbjct: 244 GADLRTVQELLGHADISTTQIYTH 267 >gi|184156584|ref|YP_001844923.1| site-specific recombinase XerD [Acinetobacter baumannii ACICU] gi|183208178|gb|ACC55576.1| Site-specific recombinase XerD [Acinetobacter baumannii ACICU] gi|322506471|gb|ADX01925.1| xerD [Acinetobacter baumannii 1656-2] Length = 306 Score = 146 bits (369), Expect = 4e-33, Method: Composition-based stats. Identities = 54/294 (18%), Positives = 104/294 (35%), Gaps = 20/294 (6%) Query: 55 TPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF---DQIIRKSGDFDY 111 K+ I SP + P L +L +R +++ ++R ++ S ++ +K+ D+ Sbjct: 2 INKKPRIPSPVQIPEHLSFL-QGFRDYLVAQTVSPHTRNAYLSDLIQCSELHKKNRLPDW 60 Query: 112 RKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171 + + +P S + L+++R +K+ Q+ + NP + PK Sbjct: 61 TSDDISDVLIELTKVGKSPRSIARCLSALRQFYKFLREQKLRSDNPVATHHSPKIGRALP 120 Query: 172 RPWTKEDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-T 226 + +ED++ G + R FE L GLR S+ ++ + ++ T Sbjct: 121 KDLCEEDVEALIQAPDITTALGLRDRAMFEVLYACGLRVSELLNLRLELINLKQGYLRIT 180 Query: 227 QKTGTIITVELPDGFMKLLAMT---------PIGKETFFINNDKQKMNATQFSIWFKAKA 277 K V L + + F+ M+ F K A Sbjct: 181 GKGNKERLVPLGQYACDWVERYLNEARPQLYKSSTDYLFLTQHGGIMSRQNFWYAIKRYA 240 Query: 278 TKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 +A + S H +R AT + GA + G + + YT A Sbjct: 241 LQANIQAELSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQVR 294 >gi|227513310|ref|ZP_03943359.1| site-specific DNA tyrosine recombinase XerD [Lactobacillus buchneri ATCC 11577] gi|227083511|gb|EEI18823.1| site-specific DNA tyrosine recombinase XerD [Lactobacillus buchneri ATCC 11577] Length = 295 Score = 146 bits (369), Expect = 4e-33, Method: Composition-based stats. Identities = 42/263 (15%), Positives = 89/263 (33%), Gaps = 23/263 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDF-----DYRKITTKHIRSGVESRKHTPSSAIQFLTS 139 L+ N+ S++ + I + + ++ K + ++ I+ ++S Sbjct: 16 RGLSENTIKSYQQDLSEAIHFFQKTTKDISKVDQFLILNYLENLQQEKKSRNTVIRTVSS 75 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRLA 195 +R F++ + V +P L V+ PK+ + ++ + S G + R Sbjct: 76 LRNFFRYLAQFGVVPDDPMLKVDSPKQSKTLPDVLSVSEVNKLLSMPNVSKPLGVRDRAM 135 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIITVELPDGFMKL---------- 244 E L +GLR S+ + L + K + + D + Sbjct: 136 LETLYATGLRVSELVNLRLVDLHLPMKLIQTVGKGDRERIIPIGDVAIDWITQYLKTTRI 195 Query: 245 -LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAG 301 L + F+N +++ K AG+ + + H +R AT + G Sbjct: 196 DLLRKRTNTDFVFLNAHGRRLTRQAIWQMIKKYVKLAGIKRHVTPHTLRHSFATHLLENG 255 Query: 302 ATAHELMATYGWKTVDQAETYTK 324 A + G + + YT Sbjct: 256 ADLRIVQELLGHADISTTQIYTH 278 >gi|257867648|ref|ZP_05647301.1| phage integrase [Enterococcus casseliflavus EC30] gi|257873977|ref|ZP_05653630.1| phage integrase [Enterococcus casseliflavus EC10] gi|257801731|gb|EEV30634.1| phage integrase [Enterococcus casseliflavus EC30] gi|257808141|gb|EEV36963.1| phage integrase [Enterococcus casseliflavus EC10] Length = 296 Score = 146 bits (369), Expect = 4e-33, Method: Composition-based stats. Identities = 46/265 (17%), Positives = 100/265 (37%), Gaps = 26/265 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDY-------RKITTKHIRSGVESRKHTPSSAIQFL 137 L+ N+R S++ Q + R I ++S ++ K + ++ I+ + Sbjct: 16 RGLSQNTRASYQRDLQQYLAFLQKKQVTQWQQIDRVIVLSFLQSLQDAGKSS-ATVIRMV 74 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF----KSFWSEGSQPR 193 +S+R ++ ++ +P ++ PK++ + + +++++ + G + R Sbjct: 75 SSLRRFHQYLRQERLTDHDPMQHIDSPKKQQKLPDTLSLQEVERLIETPDTRAVLGIRDR 134 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPD-----------GF 241 E + +GLR S+ + L ++ + T K V L D Sbjct: 135 AILEVMYATGLRVSELIGLKLNDLHLSMGLLQTTGKGDKERIVPLGDLAIQWIETYLSDA 194 Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299 L + F+NN +++ KA +AG+ K + H +R AT + Sbjct: 195 RPYLTRKTPDESHLFVNNHGTQLSRQGIWKNLKALVRQAGITKNVTPHTLRHSFATHLLE 254 Query: 300 AGATAHELMATYGWKTVDQAETYTK 324 GA + G + + YT Sbjct: 255 NGADLRTVQELLGHADISTTQIYTH 279 >gi|39996918|ref|NP_952869.1| integrase/recombinase XerD [Geobacter sulfurreducens PCA] gi|39983806|gb|AAR35196.1| integrase/recombinase XerD [Geobacter sulfurreducens PCA] Length = 295 Score = 146 bits (369), Expect = 4e-33, Method: Composition-based stats. Identities = 47/263 (17%), Positives = 94/263 (35%), Gaps = 22/263 (8%) Query: 89 VNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT---PSSAIQFLTSMRVLFK 145 + Y + + +G D I H+ + K + S + L+++R+ + Sbjct: 24 ESYARDLSRYLGYVEQHAG-GDPAAIRPLHVADFLAHLKESGLGARSRARALSAVRMFHR 82 Query: 146 WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAFEFLLY 201 + + + Y NP +E P+ + + T +++ + + R E L Sbjct: 83 FLLVEGYAETNPTSIIEAPRVLAKLPQVLTGREVEMLLAAPAGDAPIEVRDRAMLELLYA 142 Query: 202 SGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDG--------FMKLLAMTPIGK 252 +GLR S+ + + + + K V + + G Sbjct: 143 TGLRVSELVGLRTRDVNTSAGYLMTVGKGEKERLVPMGESACAAVVLYLSSARIQLGRGG 202 Query: 253 ET--FFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELM 308 E+ F++ ++M F K ++ +AG+ K S H +R AT + GA + Sbjct: 203 ESPFLFLSRLGERMTRQAFWNIIKKRSRQAGILKGISPHTLRHSFATHLLENGADLRSVQ 262 Query: 309 ATYGWKTVDQAETYTKGADRIRL 331 A G + + YT R RL Sbjct: 263 AMLGHADLSTTQIYTH-VTRERL 284 >gi|311030726|ref|ZP_07708816.1| site-specific tyrosine recombinase XerD [Bacillus sp. m3-13] Length = 296 Score = 146 bits (369), Expect = 4e-33, Method: Composition-based stats. Identities = 41/264 (15%), Positives = 94/264 (35%), Gaps = 24/264 (9%) Query: 85 GSLAVNSRISFES-------YFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFL 137 LA N+ +S+E Y ++ S + T + + + + + Sbjct: 16 KGLASNTVVSYERDLKSYLLYLSKVEEISSLEAVSRSTIIQFLKFLTENGKSSKTIARHI 75 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPR 193 S+R ++ +R++ +P + ++RPK++ + + + E++Q G + + Sbjct: 76 ASIRSFHQFLLREKVTTQDPTVHIDRPKQEQKLPQVMSVEEVQALLDSPDTSKVFGMRDK 135 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLA------ 246 E L +G+R S+ + + + ++ K + L + Sbjct: 136 AMLELLYATGMRVSELISLNLSDVHLTMGFVRCIGKGNKERIIPLGTMAQNAITNYIEES 195 Query: 247 ----MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300 + + F+N ++ F K +AG+ K + H +R AT + Sbjct: 196 RSQLLKKKTTDALFVNLYGNRLTRQGFWKILKKLTKEAGIEKELTPHTLRHSFATHLLEN 255 Query: 301 GATAHELMATYGWKTVDQAETYTK 324 GA + G + + YT Sbjct: 256 GADLRAVQEMLGHADISTTQIYTH 279 >gi|95929136|ref|ZP_01311880.1| Tyrosine recombinase XerD [Desulfuromonas acetoxidans DSM 684] gi|95134634|gb|EAT16289.1| Tyrosine recombinase XerD [Desulfuromonas acetoxidans DSM 684] Length = 298 Score = 146 bits (369), Expect = 4e-33, Method: Composition-based stats. Identities = 43/264 (16%), Positives = 86/264 (32%), Gaps = 24/264 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE------SRKHTPSSAIQFLT 138 L+ N+ S+ + I + + ++ + S + L Sbjct: 18 RGLSANTLESYARDLQRYIGFLEERHINDVIAIRQNDVLDFFTELKEQGMGVRSRARLLA 77 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRL 194 ++R +AV + +A NP + PK + D+ +G + Sbjct: 78 ALRGFHHYAVDEYQLANNPVARLTTPKMLQTLPDTLSPADVDALLDINDDGQALTRRDIA 137 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------ELPDGFMKLL 245 E L +G+R S+ + L N ++ G+ + L D ++ Sbjct: 138 MLELLYATGMRVSELVGLKLDDLHLNSGYLRVFGKGSKQRIIPIGEIAIDTLRDYLARVR 197 Query: 246 AMTPIGK---ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300 + F+N + + F K +A +AG+ K + H +R AT + Sbjct: 198 PELDRQRNLSPCVFLNRSGKGLTRQGFWKMIKRRALEAGITKNVTPHTLRHSFATHLLEN 257 Query: 301 GATAHELMATYGWKTVDQAETYTK 324 GA + G + + YT Sbjct: 258 GADLRVVQMLLGHVDISTTQIYTH 281 >gi|291279466|ref|YP_003496301.1| site-specific DNA tyrosine recombinase XerD [Deferribacter desulfuricans SSM1] gi|290754168|dbj|BAI80545.1| site-specific DNA tyrosine recombinase XerD [Deferribacter desulfuricans SSM1] Length = 293 Score = 146 bits (369), Expect = 5e-33, Method: Composition-based stats. Identities = 50/275 (18%), Positives = 102/275 (37%), Gaps = 30/275 (10%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIR--KSGDFDYRKITTK-HIRSGVESRKHTP 130 L+ EY L+ N+ ++ S + K +D + T + + ++ Sbjct: 12 LVEEY--------LSENTIKAYLSDVKAFLDFVKIKKYDIKSEDTVISYIKNLIKKSYSI 63 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK----SFW 186 S ++ ++S+ V + + ++++ + NP L +++PK+ + ++++ + Sbjct: 64 ESILRKISSISVYYDYLIKEKVIDKNPVLLIDKPKKWFKLPDFLNEDEILKILDTVDKST 123 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQKTGTIITVELPDGFMKL 244 G + + L SG+R S+ V + I IK K G V + ++ Sbjct: 124 PHGFRDYIIINMLYTSGMRISELVNIEVSNCDFRRGIIRIK-GKGGKERFVPIHKKLIEE 182 Query: 245 LA----------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKF 292 L + F+N K++ + A AG+ K S H R Sbjct: 183 LNKYLEIRHNYFVKGRDNGYLFLNKFGNKLSREYCWKIVRKYAEMAGIKKKVSPHVFRHT 242 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 AT GA + G ++ E YT+ D Sbjct: 243 FATHLLKNGADLRVIQMLLGHSSILTTEIYTQLDD 277 >gi|169827277|ref|YP_001697435.1| tyrosine recombinase xerD [Lysinibacillus sphaericus C3-41] gi|168991765|gb|ACA39305.1| Tyrosine recombinase xerD [Lysinibacillus sphaericus C3-41] Length = 300 Score = 146 bits (369), Expect = 5e-33, Method: Composition-based stats. Identities = 49/266 (18%), Positives = 98/266 (36%), Gaps = 27/266 (10%) Query: 85 GSLAVNS----RISFESYFDQIIRKSGDFDYRKITT----KHIRSGVESRKHTPSSAIQF 136 L+VN+ R ESY + + G ++ I +H+ K T + + Sbjct: 19 RQLSVNTLASYRRDLESYVNFLQNAEGMANFNHIERTTILRHLEQLRVQGK-TSRTIARH 77 Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQP 192 ++S+R ++ +R++ +P + +E P + + + E+++ + +G + Sbjct: 78 ISSIRSFHQFLLREKRAESDPTVHLEMPTIEQKLPNILSIEEIEALLTAPNRSKPQGIRD 137 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKL------- 244 E L SG+R S+ + L + ++ K G + L + Sbjct: 138 LAMLELLYGSGMRISELIALDLADLHLTMGFVRVFGKGGKERIIPLGKSALSAISTYLNN 197 Query: 245 ----LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISA 298 L + FFIN +++ K A KAG+ + H +R AT Sbjct: 198 ARGQLQGKYPKTDAFFINQRGKRLTRQGCWKLMKEHALKAGIQHELTPHTLRHSFATHLV 257 Query: 299 DAGATAHELMATYGWKTVDQAETYTK 324 + GA + G + + YT Sbjct: 258 ENGADLRAVQEMLGHADISTTQIYTH 283 >gi|327393403|dbj|BAK10825.1| site-specific recombinase, phage integrase family hypothetical protein [Pantoea ananatis AJ13355] Length = 337 Score = 146 bits (369), Expect = 5e-33, Method: Composition-based stats. Identities = 61/336 (18%), Positives = 109/336 (32%), Gaps = 39/336 (11%) Query: 7 LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHEST--FIPAYMSALTGSTPKREYINSP 64 +PP V + GK Y F +G +RL AY + + + + Y Sbjct: 13 MPPRVYR-----GKSAYEFHPKNGGAMRLCDLGSPQSKVWAAYEALINETPDIKNY---- 63 Query: 65 RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124 K L + KS + LA ++ + Y +++ GD I +HIR ++ Sbjct: 64 -------KSLAERFFKSPDFYELAAETQKDYRKYSLKVLSVFGDMPSDSIKPEHIRKYMD 116 Query: 125 SRK-HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 R + + A + M +F+W + V NP V++ K K T + Sbjct: 117 KRGLRSRTQANREKAFMSRVFRWGYERGLVKQNPTKGVKQFKEKARDRYV-TDAEYSSLY 175 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243 S + ++A E R +D + + IK KT Sbjct: 176 SVAPD--MVKIAMELAYLCCARQADILELKKSQIIDEGILIKQSKTSVSQIKGWSPRLQD 233 Query: 244 LLA-----MTPIGKETFFINND--KQKMNATQFSIWFKAKATKAG-------VNKSAHGV 289 ++A G + F+ + K F+ + A + + H + Sbjct: 234 VIAQASTLPLKSGMSSIFVIHQPSGAKYTRDGFNSRWLKAKQDAKAAFPELDFDFTFHDL 293 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 + + T E+ G K V Q Y + Sbjct: 294 KAKGISDLDGNIYTKQEIS---GHKDVKQTARYNRK 326 >gi|24372537|ref|NP_716579.1| integrase/recombinase XerD [Shewanella oneidensis MR-1] gi|34222794|sp|Q7ZAJ8|XERD_SHEON RecName: Full=Tyrosine recombinase xerD gi|24346549|gb|AAN54024.1|AE015540_4 integrase/recombinase XerD [Shewanella oneidensis MR-1] Length = 300 Score = 146 bits (368), Expect = 5e-33, Method: Composition-based stats. Identities = 51/289 (17%), Positives = 108/289 (37%), Gaps = 28/289 (9%) Query: 74 LISEYRKSAHW--GSLAVNSRISFE---SYFDQIIRKSGDFDYRKITTKHIRSGVESRKH 128 LI + W L+ N+ ++ +FD+ ++ G R + +R+ + R Sbjct: 10 LIDAFLDDL-WSSKGLSDNTLSAYRTDLRHFDRYLQSQG-LRLRDVGQADVRAYLAYRVE 67 Query: 129 T---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 +S+ + L+S+R + + ++ + ++ +P +E PK ++ + + + Sbjct: 68 QQFARTSSARLLSSLRRFYNYLLQTKQISGDPMAQIESPKLSRHLPDSLSESQVDRLLAE 127 Query: 186 ----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG 240 + + E L +GLR S+ ++ + ++ K G V + + Sbjct: 128 PNVDDPVECRDKAMLELLYATGLRVSELVGLTMEQMSLRQGLVRIIGKGGKERLVPMGEM 187 Query: 241 F----------MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHG 288 + + I + F + Q M F K A++AG+ S H Sbjct: 188 AITEVEHYLTSARHELLGHIQSDVVFPSKRSQMMTRQTFWHRIKLYASRAGIETELSPHT 247 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 +R AT + GA + G + + YT A R RL + + Sbjct: 248 LRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVA-RARLQELHQQ 295 >gi|59711055|ref|YP_203831.1| site-specific tyrosine recombinase XerD [Vibrio fischeri ES114] gi|197335240|ref|YP_002155204.1| tyrosine recombinase XerD [Vibrio fischeri MJ11] gi|59479156|gb|AAW84943.1| site-specific tyrosine recombinase [Vibrio fischeri ES114] gi|197316730|gb|ACH66177.1| tyrosine recombinase XerD [Vibrio fischeri MJ11] Length = 298 Score = 146 bits (368), Expect = 5e-33, Method: Composition-based stats. Identities = 43/279 (15%), Positives = 103/279 (36%), Gaps = 26/279 (9%) Query: 73 WLISEYRKSAHW--GSLAVNSRISFESYFDQIIRKSGDFDYR-----KITTKHIRSGVES 125 L+ + + W L+ N+ S+ + ++++ D Y+ + ++ + Sbjct: 6 ALMERFLDTM-WMERGLSENTLASYRNDLVKLLQWLEDNHYKCASISAMGLNEFQAYLVD 64 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 +++ +S + L+++R F++ R++ +P + PK + ++E + + Sbjct: 65 KEYKQTSRARMLSALRRFFQYLHREKIRGDDPTALLASPKLPQRLPKDLSEEQVDALLNA 124 Query: 186 ----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDG 240 + R E L +GLR ++ ++++ ++ T K V + + Sbjct: 125 PNVEDPLELRDRAMLELLYATGLRVTELVSLTMENVSLRQGVVRVTGKGDKERLVPMGEN 184 Query: 241 FMKLLAMTPIGK----------ETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAH 287 + + + F + ++M F K A AG++ S H Sbjct: 185 AVDWIEQFLTHGRPMLLGEKSSDVVFPSKRAKQMTRQTFWHRIKHYAVIAGIDSDKLSPH 244 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 +R AT + GA + G + + YT A Sbjct: 245 VLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVA 283 >gi|199598714|ref|ZP_03212128.1| Integrase [Lactobacillus rhamnosus HN001] gi|229552169|ref|ZP_04440894.1| integrase XerD [Lactobacillus rhamnosus LMS2-1] gi|258508373|ref|YP_003171124.1| tyrosine recombinase XerD [Lactobacillus rhamnosus GG] gi|258539584|ref|YP_003174083.1| tyrosine recombinase xerD [Lactobacillus rhamnosus Lc 705] gi|199590402|gb|EDY98494.1| Integrase [Lactobacillus rhamnosus HN001] gi|229314471|gb|EEN80444.1| integrase XerD [Lactobacillus rhamnosus LMS2-1] gi|257148300|emb|CAR87273.1| Tyrosine recombinase xerD [Lactobacillus rhamnosus GG] gi|257151260|emb|CAR90232.1| Tyrosine recombinase xerD [Lactobacillus rhamnosus Lc 705] gi|259649687|dbj|BAI41849.1| integrase [Lactobacillus rhamnosus GG] Length = 293 Score = 146 bits (368), Expect = 5e-33, Method: Composition-based stats. Identities = 42/271 (15%), Positives = 96/271 (35%), Gaps = 23/271 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH--IRSGVESRKHT--PSSAIQFLTSM 140 LA +++S++ + D I++ ++ + T P+S + ++++ Sbjct: 16 RGLARTTQVSYQQDLTTFMAWLSDQKQTTFPEDFGVIQAFLKHQNDTKAPASVSRMISAL 75 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRLAF 196 R +++ +R+ + +P ++ PK+ + ++ + G + R F Sbjct: 76 RKFYRFLLREGAIKSDPMTKIDTPKKAQHLPATLSGTEIDALMAKPDTTKPLGLRDRAIF 135 Query: 197 EFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKE- 253 E + +GLR S+ + HL N+ + T K V + + Sbjct: 136 ELMYATGLRVSEVVGLRLDQLHLAMNLLQV-TGKGDKERLVPISPQAADWVNRYLQESRP 194 Query: 254 ---------TFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302 F+N + KA G+ K + H +R AT + GA Sbjct: 195 RLIKHQQPKAVFVNFHGHALTRQAIWKNLKAYIASVGIEKDVTPHTLRHSFATRLLENGA 254 Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGI 333 + G + + YT +++ + + Sbjct: 255 DLRVVQELLGHSDISTTQIYTHLSNQHLVAV 285 >gi|297205885|ref|ZP_06923280.1| tyrosine recombinase XerD [Lactobacillus jensenii JV-V16] gi|297149011|gb|EFH29309.1| tyrosine recombinase XerD [Lactobacillus jensenii JV-V16] Length = 300 Score = 146 bits (368), Expect = 5e-33, Method: Composition-based stats. Identities = 45/264 (17%), Positives = 100/264 (37%), Gaps = 26/264 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRK------ITTKHIRSGVESRKHTPSSAIQFLT 138 L+ N+ S++ +Q I I ++ + K T S+ + +T Sbjct: 20 RGLSKNTVDSYQLDLNQFIEYLDKEKITDWPEDPLIIDSYLAKQRDEGKKT-STISRGIT 78 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRL 194 ++R +++ +RQ + ++P + ++ PK++ ++++++Q + G + R Sbjct: 79 TLRRFYRYLLRQHILVVDPLIQIDTPKQEKRLPLALSQKEVEQLLAQPDIKTTTGLRDRA 138 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAM------ 247 E L +G+R S+ L ++ I+ K V + D + L Sbjct: 139 ILELLYATGMRVSELINLKEADLHTDLKIIRVLGKGSKERLVPVTDFALNWLDKYLKNVR 198 Query: 248 ------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299 + + F+NN ++ K + A ++K + H +R AT + Sbjct: 199 DPALLKKGVACDFLFLNNRAGQLTRQAVWQSIKKYSKLAKIDKDITPHTLRHTFATHLLE 258 Query: 300 AGATAHELMATYGWKTVDQAETYT 323 GA + G + + YT Sbjct: 259 NGADLRVVQEILGHSDISTTQIYT 282 >gi|256851002|ref|ZP_05556391.1| tyrosine recombinase XerD [Lactobacillus jensenii 27-2-CHN] gi|260661214|ref|ZP_05862128.1| tyrosine recombinase XerD [Lactobacillus jensenii 115-3-CHN] gi|282932045|ref|ZP_06337503.1| tyrosine recombinase XerD [Lactobacillus jensenii 208-1] gi|256616064|gb|EEU21252.1| tyrosine recombinase XerD [Lactobacillus jensenii 27-2-CHN] gi|260548151|gb|EEX24127.1| tyrosine recombinase XerD [Lactobacillus jensenii 115-3-CHN] gi|281303812|gb|EFA95956.1| tyrosine recombinase XerD [Lactobacillus jensenii 208-1] Length = 300 Score = 146 bits (368), Expect = 5e-33, Method: Composition-based stats. Identities = 45/264 (17%), Positives = 100/264 (37%), Gaps = 26/264 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRK------ITTKHIRSGVESRKHTPSSAIQFLT 138 L+ N+ S++ +Q I I ++ + K T S+ + +T Sbjct: 20 RGLSKNTVDSYQLDLNQFIEYLDKEKITDWPEDPLIIDSYLAKQRDEGKKT-STISRGIT 78 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRL 194 ++R +++ +RQ + ++P + ++ PK++ ++++++Q + G + R Sbjct: 79 TLRRFYRYLLRQHILVVDPLIQIDTPKQEKRLPLALSQKEVEQLLAQPDIKTTTGLRDRA 138 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAM------ 247 E L +G+R S+ L ++ I+ K V + D + L Sbjct: 139 ILELLYATGMRVSELINLKEADLHTDLKIIRVLGKGSKERLVPVTDFALSWLDKYLKNVR 198 Query: 248 ------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299 + + F+NN ++ K + A ++K + H +R AT + Sbjct: 199 DPALLKKGVACDFLFLNNRAGQLTRQAVWQSIKKYSKLAKIDKDITPHTLRHTFATHLLE 258 Query: 300 AGATAHELMATYGWKTVDQAETYT 323 GA + G + + YT Sbjct: 259 NGADLRVVQEILGHSDISTTQIYT 282 >gi|228470587|ref|ZP_04055444.1| tyrosine recombinase XerD [Porphyromonas uenonis 60-3] gi|228307714|gb|EEK16690.1| tyrosine recombinase XerD [Porphyromonas uenonis 60-3] Length = 309 Score = 146 bits (368), Expect = 5e-33, Method: Composition-based stats. Identities = 54/283 (19%), Positives = 101/283 (35%), Gaps = 24/283 (8%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKH---IRSGVES 125 + LI Y+ L+ NS S+ D++ GD R++T +H + + Sbjct: 7 QQLIQRYKTYLRLEQHLSDNSIDSYLYDVDKLYTYIGDMGLSLREVTLQHLNNFAAHLLD 66 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ----Q 181 + S + L+ ++ F++ +E + +P ++ P + T ++ Sbjct: 67 LGISMRSLARVLSGVKSFFRFLSLEEEIERDPTDMLQTPPIPKKLPEVLTLAEIDSLLGA 126 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG 240 E S+ E L GLR S+ C + + + K V + Sbjct: 127 IDEERPEASRDTAIIEVLYSCGLRVSELCGLTYSDVFLDEGYLHVWGKGRKERLVPMSPK 186 Query: 241 FMKLLA----------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHG 288 + + P + FI+ Q ++ + A AG++K S H Sbjct: 187 AVSDVQRYLNDPCRYNAKPEYDQYIFISRRGQPISRITVFCLIRTLAELAGIHKEISPHT 246 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 +R AT + GA H + G +++ E YT DR L Sbjct: 247 LRHSFATHLLEGGADLHAIQLMMGHESIATTEIYTH-VDRTAL 288 >gi|227510303|ref|ZP_03940352.1| site-specific DNA tyrosine recombinase, XerD [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227189955|gb|EEI70022.1| site-specific DNA tyrosine recombinase, XerD [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 295 Score = 146 bits (368), Expect = 5e-33, Method: Composition-based stats. Identities = 42/263 (15%), Positives = 89/263 (33%), Gaps = 23/263 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDF-----DYRKITTKHIRSGVESRKHTPSSAIQFLTS 139 L+ N+ S++ + I + + ++ K + ++ I+ ++S Sbjct: 16 RGLSENTIKSYQQDLSEAIHFFQKTTKDISKVDQFLILNYLENLQQEKKSRNTVIRTVSS 75 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRLA 195 +R F++ + V +P L V+ PK+ + ++ + S G + R Sbjct: 76 LRNFFRYLAQFGVVPDDPMLKVDSPKQSKTLPDVLSVSEVNKLLSMPNVSKPLGVRDRAM 135 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIITVELPDGFMKL---------- 244 E L +GLR S+ + L + K + + D + Sbjct: 136 LETLYATGLRVSELVNLRLVDLHLPMKLIQTVGKGDRERIIPIGDVAIDWITKYLKTTRI 195 Query: 245 -LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAG 301 L + F+N +++ K AG+ + + H +R AT + G Sbjct: 196 DLLRKRTNTDFVFLNAHGRRLTRQAIWQMIKKYVKLAGIKRHVTPHTLRHSFATHLLENG 255 Query: 302 ATAHELMATYGWKTVDQAETYTK 324 A + G + + YT Sbjct: 256 ADLRIVQELLGHADISTTQIYTH 278 >gi|306843261|ref|ZP_07475870.1| phage integrase family protein [Brucella sp. BO2] gi|306286527|gb|EFM58110.1| phage integrase family protein [Brucella sp. BO2] Length = 235 Score = 146 bits (368), Expect = 5e-33, Method: Composition-based stats. Identities = 46/206 (22%), Positives = 79/206 (38%), Gaps = 7/206 (3%) Query: 127 KHTPSSAIQFLTSMRVLFKWAVR-QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 TP +A L ++R + +WA +E ++ +P V R+ EG +PWT E + F Sbjct: 6 ADTPGAANNLLDALRAMCRWASGPRELLSRDPTQGVAHF-RQGEGHKPWTPEQL-AFADK 63 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245 G R A+ Y+G R SD R G + + FS+ +KTG + + Sbjct: 64 NFTG-MLRRAYVLARYTGQRISDVVRLGWTDIDDGGFSLPQKKTGVRPWCPIFPELEAEM 122 Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGAT 303 + F ++ + W V HG+R + +G + Sbjct: 123 SKWEKRPGPFLYQDNGRPFTTNLMWKWLNDARKDQPVIEEVVWHGLRANAVIRLRQSGFS 182 Query: 304 AHELMATYGWKTVDQAETYTKGADRI 329 ++ G + E Y++ ADR Sbjct: 183 VPQICDAVG-MSPQMVERYSRYADRK 207 >gi|291283208|ref|YP_003500026.1| Site-specific recombinase, phage integrase family [Escherichia coli O55:H7 str. CB9615] gi|290763081|gb|ADD57042.1| Site-specific recombinase, phage integrase family [Escherichia coli O55:H7 str. CB9615] gi|320663362|gb|EFX30662.1| Site-specific recombinase, phage integrase family protein [Escherichia coli O55:H7 str. USDA 5905] Length = 341 Score = 146 bits (368), Expect = 6e-33, Method: Composition-based stats. Identities = 60/330 (18%), Positives = 108/330 (32%), Gaps = 29/330 (8%) Query: 6 RLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65 +LPP V + Y K R ES + A L K E + R Sbjct: 12 KLPPKVYPNK------YSYVWKPTSR--------ESVTLTAIEDGLAALWKKYEETVNHR 57 Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125 + T L ++ SA++ L+ ++ + + +++ G + +HIR ++ Sbjct: 58 DRAMTFGRLWEKFLASAYYSELSPRTQKDYLQHQKKLLAVFGKVLADSVKPEHIRRYMDK 117 Query: 126 RKH-TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 R + + A +SM ++ W + YV NPC V + K K T ++ Q S Sbjct: 118 RGEQSKTQANHEKSSMSRVYSWGYERGYVKANPCAGVSKFKAKNRERYV-TDKEYQAVLS 176 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244 +A E R SD + + N+ I+ KTG + Sbjct: 177 VAPV--PVFIAMEIAYLCAARISDVLSLKWEQIGNDGIFIQQGKTGKKQIKAWSPRLQSV 234 Query: 245 LAMTP--IGKETFFINNDKQKMNATQFSIWFKAKATKAG------VNKSAHGVRKFSATI 296 + N + F+ + AG + + H + K Sbjct: 235 IEKAKQLPKSAYVISNQYGNRYMYKGFNEMWVEARNLAGQISGIATDFTFHDL-KAKGIS 293 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGA 326 + ++ + G KT Q Y + Sbjct: 294 DYE--GSSRDKQLFSGHKTEGQVLIYDRKV 321 >gi|260173069|ref|ZP_05759481.1| integrase [Bacteroides sp. D2] gi|315921346|ref|ZP_07917586.1| integrase [Bacteroides sp. D2] gi|313695221|gb|EFS32056.1| integrase [Bacteroides sp. D2] Length = 319 Score = 146 bits (368), Expect = 6e-33, Method: Composition-based stats. Identities = 52/275 (18%), Positives = 102/275 (37%), Gaps = 24/275 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQI-----IRKSGDFDYRKITTKHIRSGVESRK 127 +I +Y++ SL++N+ ++ + D++ + D + +G+ Sbjct: 16 IIRKYQQYLKLEKSLSLNTLDAYLTDLDKLMSFLTLEGINVLDVCLSDLQRFAAGLHDIG 75 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 P S + L+ ++ F++ + + Y+ +P +E PK + T E++ + S Sbjct: 76 IHPRSQARILSGIKSFFRFLILENYLEADPSELLEGPKIGFKLPEVLTVEEIDRIISAVD 135 Query: 188 ----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT-VELPDGFM 242 EG + R E L GLR S+ + L + IK + G+ V + + Sbjct: 136 RSKAEGQRNRAILETLYSCGLRVSELITLKLSDLYFDEGFIKVEGKGSKQRLVPISPRAI 195 Query: 243 KLLAMTPIG-----------KETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289 + + F + ++ K A KAG+ K S H Sbjct: 196 NEIKLYITDRNQIEVKKGHEDFVFVSQRRGKGLSRIMIFHMIKELAQKAGITKNISPHTF 255 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 R AT + GA + G +++ E YT Sbjct: 256 RHSFATHLLEGGANLRAIQCMLGHESIATTEIYTH 290 >gi|126650133|ref|ZP_01722366.1| site-specific tyrosine recombinase XerD [Bacillus sp. B14905] gi|126593305|gb|EAZ87267.1| site-specific tyrosine recombinase XerD [Bacillus sp. B14905] Length = 300 Score = 146 bits (368), Expect = 6e-33, Method: Composition-based stats. Identities = 48/266 (18%), Positives = 99/266 (37%), Gaps = 27/266 (10%) Query: 85 GSLAVNS----RISFESYFDQIIRKSGDFDYRKITT----KHIRSGVESRKHTPSSAIQF 136 L+VN+ R ESY + + G D+ ++ +H+ K T + + Sbjct: 19 RQLSVNTLASYRRDLESYVNFLQNAEGMADFNRVERTTILRHLEQLRAQGK-TSRTIARH 77 Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQP 192 ++S+R ++ +R++ +P + +E P + + + E+++ + +G + Sbjct: 78 ISSIRSFHQFLLREKRAESDPTVHLEMPTIEQKLPNILSIEEIEALLTAPNRSKPQGIRD 137 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKL------- 244 E L SG+R S+ + + + ++ K G + L + Sbjct: 138 LAMLELLYGSGMRISELIALDLADIHLTMGFVRVFGKGGKERIIPLGKSALSAISTYLNN 197 Query: 245 ----LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISA 298 L + FFIN +++ K A KAG+ + H +R AT Sbjct: 198 ARGQLQGKYPKTDAFFINQRGKRLTRQGCWKLMKEHALKAGIQHELTPHTLRHSFATHLV 257 Query: 299 DAGATAHELMATYGWKTVDQAETYTK 324 + GA + G + + YT Sbjct: 258 ENGADLRAVQEMLGHADISTTQIYTH 283 >gi|301154937|emb|CBW14400.1| site-specific tyrosine recombinase [Haemophilus parainfluenzae T3T1] Length = 297 Score = 146 bits (368), Expect = 6e-33, Method: Composition-based stats. Identities = 46/270 (17%), Positives = 95/270 (35%), Gaps = 24/270 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDY-----RKITTKHIRSGVESRKHTPSSAIQFLTS 139 L+ N+ S+ + + + + + + +S + L++ Sbjct: 18 KGLSENTVQSYRLDLTALCDWLDKQNLSLETLEPLDLQQFLGSRLEQGYKATSTARMLSA 77 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS----FWSEGSQPRLA 195 MR LF++ R++Y +P + PK + + T++ + + + + Sbjct: 78 MRKLFQYLYREKYRTDDPSAVLSSPKLPSRLPKYLTEQQVTDLLNTPDVEIPLELRDKAM 137 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKL-----LAMTP 249 E L +GLR ++ ++++ ++ K V + + L P Sbjct: 138 LELLYATGLRVTELVTLTIENMNLQQGVVRVIGKGNKERIVPMGEEAAFWVRQFVLYGRP 197 Query: 250 I-----GKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAG 301 I + F + Q+M F K A AG++ S H +R AT + G Sbjct: 198 ILLNGQSSDVVFPSQRAQQMTRQTFWHRIKHYAILAGIDTDALSPHVLRHAFATHLVNHG 257 Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRL 331 A + G + + YT A + RL Sbjct: 258 ADLRVVQMLLGHSDLSTTQIYTHVA-KERL 286 >gi|297539666|ref|YP_003675435.1| tyrosine recombinase XerD [Methylotenera sp. 301] gi|297259013|gb|ADI30858.1| tyrosine recombinase XerD [Methylotenera sp. 301] Length = 302 Score = 146 bits (368), Expect = 6e-33, Method: Composition-based stats. Identities = 51/268 (19%), Positives = 98/268 (36%), Gaps = 24/268 (8%) Query: 86 SLAVNSRISFESYFDQII--RKSGDFDYRKITTKHIRSGVESR--KHTPSSAIQFLTSMR 141 L+ N+ S+ + + I+ + + + P S + + SMR Sbjct: 26 GLSKNTLESYRLDLTSFAYWLTPQNKQLLTVDQADIQQYLAVKFPQSQPRSISRLIASMR 85 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS----FWSEGSQPRLAFE 197 +++ +R ++++P + ++ PK + +E++ + + G + R E Sbjct: 86 RFYRYLMRDNKISLDPTIQIQSPKLPRSLPKSLNEEEVIALLNAPNIVEAAGLRDRAMLE 145 Query: 198 FLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGK--- 252 L GLR S+ V + + + I T K V + + + ++ Sbjct: 146 LLYACGLRVSELVGVKVTEVSVSDGVVRI-TGKGSKTRLVPMGEEAVDWISRYLSDARSA 204 Query: 253 -------ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGAT 303 + F+ N + M F K A AG+NK S H +R AT + GA Sbjct: 205 ILQKRLCDALFVTNRGEAMTRQAFWYLIKRYALLAGINKHMSPHVLRHAFATHLLNHGAD 264 Query: 304 AHELMATYGWKTVDQAETYTKGADRIRL 331 + G + + YT A R RL Sbjct: 265 LRVVQMLLGHSDISTTQIYTHVA-RERL 291 >gi|308069572|ref|YP_003871177.1| Tyrosine recombinase xerD [Paenibacillus polymyxa E681] gi|305858851|gb|ADM70639.1| Tyrosine recombinase xerD [Paenibacillus polymyxa E681] Length = 317 Score = 146 bits (368), Expect = 6e-33, Method: Composition-based stats. Identities = 42/283 (14%), Positives = 101/283 (35%), Gaps = 32/283 (11%) Query: 76 SEYRKSAHWGSLAVNSRISFESY---FDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132 +Y + L+ ++ +++ F + G + H+ + K + Sbjct: 12 VQYME--EEKGLSRSTLEAYQRDVQQFAEFAESCGIEQPDNVQRSHLVLYLGRLKEQGKA 69 Query: 133 A---IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---- 185 A + + S+R F + +R+ +P + +E PK + T++++++ Sbjct: 70 AATISRSVASIRSFFHFLIREGITIHDPSVLLELPKATKKKPSVLTQDEIERLLDAPDVT 129 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK-TGTIITVELPDGFMKL 244 +G + + E L +G+R S+ V+ ++ ++ + G V + + Sbjct: 130 APQGVRDKAMLELLYATGIRVSELIALNVRDVRTDLRFVHCGGEAGKERVVPISREASQW 189 Query: 245 LAM-----------------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKS 285 + +E F+N Q+++ F K +AG+ + + Sbjct: 190 AQAYMDEQRLLLLKSGQGEEAQVEQEAMFLNVSGQRLSRQGFWKMIKKYGQEAGISEDIT 249 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 H +R A + GA + G + + Y + A R Sbjct: 250 PHTLRHSFAVHMLEGGADLRSVQEMLGHADLSTTQVYAQTARR 292 >gi|257876556|ref|ZP_05656209.1| phage integrase [Enterococcus casseliflavus EC20] gi|257810722|gb|EEV39542.1| phage integrase [Enterococcus casseliflavus EC20] Length = 296 Score = 146 bits (368), Expect = 6e-33, Method: Composition-based stats. Identities = 42/264 (15%), Positives = 95/264 (35%), Gaps = 24/264 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH------IRSGVESRKHTPSSAIQFLT 138 L+ N+R S++ Q + + ++ + ++ I+ ++ Sbjct: 16 RGLSQNTRASYQRDLQQYLAFLQKKQVTQWQQIDRVIVLSFLQSLQEAGKSSATVIRMVS 75 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF----KSFWSEGSQPRL 194 S+R ++ ++ +P ++ PK++ + + +++++ + G + R Sbjct: 76 SLRRFHQYLRQERLTDHDPMQHIDSPKKQQKLPDTLSLQEVERLIETPDTRAVLGIRDRA 135 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPD-----------GFM 242 E + +GLR S+ + L ++ + T K V L D Sbjct: 136 ILEVMYATGLRVSELIGLKLNDLHLSMGLLQTTGKGDKERIVPLGDLAIQWIETYLSDAR 195 Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300 L + F+NN +++ KA +AG+ K + H +R AT + Sbjct: 196 PYLTRKTPDESHLFVNNHGTQLSRQGIWKNLKALVRQAGITKNVTPHTLRHSFATHLLEN 255 Query: 301 GATAHELMATYGWKTVDQAETYTK 324 GA + G + + YT Sbjct: 256 GADLRTVQELLGHADISTTQIYTH 279 >gi|15895336|ref|NP_348685.1| XerD family integrase/recombinase [Clostridium acetobutylicum ATCC 824] gi|34222991|sp|Q97HE5|XERD_CLOAB RecName: Full=Tyrosine recombinase xerD gi|15025053|gb|AAK80025.1|AE007709_9 Integrase/recombinase XerD family [Clostridium acetobutylicum ATCC 824] gi|325509481|gb|ADZ21117.1| Integrase/recombinase XerD family [Clostridium acetobutylicum EA 2018] Length = 292 Score = 145 bits (367), Expect = 6e-33, Method: Composition-based stats. Identities = 46/282 (16%), Positives = 101/282 (35%), Gaps = 20/282 (7%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF-----DYRKITTKHIRSGVESR 126 LI +Y +L++N+ ++ + + + IT ++ Sbjct: 2 DNLIEQYFAEIRKKNLSLNTIDAYRRDIKKFHEFLDEKGEKLREVDVITIMSYVQYLQKN 61 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK--- 183 SS ++ + S+R FK+ + + NP E PK + T E++++ Sbjct: 62 GRANSSIVRNIVSIRNFFKYLEIKGIMDDNPVTQYEMPKIRRNFPDILTIEEVEKLLMGP 121 Query: 184 -SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ--KTGTII------T 234 +G + + E + +G++ ++ + + + IK + K I Sbjct: 122 DGNTDKGIRDKAMLEIMYATGMKVTELLNLTIYDINLKLSYIKCRGIKNKERIIPMGSYA 181 Query: 235 VELPDGFMKLLAMTPIGK-ETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRK 291 V+ + ++K+ + + F N KM F K A ++G+ K A+ +R Sbjct: 182 VKCLEIYLKVRTKLNVQNIDYLFFNLQGDKMTRQGFWKIIKQYAQESGIKKKINAYTLRH 241 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 A GA + G + + Y+ + R+ Sbjct: 242 SFAVHLLQNGADIKTIQELLGHSDMATTQIYSGMYRKTRIAE 283 >gi|56420850|ref|YP_148168.1| site-specific tyrosine recombinase XerD [Geobacillus kaustophilus HTA426] gi|56380692|dbj|BAD76600.1| integrase/recombinase [Geobacillus kaustophilus HTA426] Length = 298 Score = 145 bits (367), Expect = 6e-33, Method: Composition-based stats. Identities = 45/266 (16%), Positives = 102/266 (38%), Gaps = 26/266 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFD-------YRKITTKHIRSGVESRKHTPSSAIQFL 137 +LA N+ +S+E + +R + ++ H + + + + + L Sbjct: 16 RNLAHNTIVSYERDLKKYVRYLRQVEQLQAWGEVERLHILHFLKFLSEQGQSARTIARHL 75 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPR 193 S+R ++ +R++ A +P + +E P+ + + + E+++ + G + + Sbjct: 76 ASIRSFHQFLLREKIAAQDPTVHIETPQFERTLPKVLSVEEVEALLAAPQVSTPFGLRDK 135 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-------------ELPDG 240 E L +G+R S+ + + + + ++ G + L G Sbjct: 136 AMLELLYATGMRVSELVQLNLSDVHLTMGFVRCYGKGRKERIVPIGRMAIEALAHYLERG 195 Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISA 298 +L+ E F+N+ Q++ F K A +AG+ K + H +R AT Sbjct: 196 RPQLVNPRRRATEALFLNHYGQRLTRQGFWKILKRLAKEAGIEKELTPHTLRHSFATHLL 255 Query: 299 DAGATAHELMATYGWKTVDQAETYTK 324 + GA + G + + YT Sbjct: 256 ENGADLRAVQELLGHADISTTQMYTH 281 >gi|56963547|ref|YP_175278.1| site-specific tyrosine recombinase [Bacillus clausii KSM-K16] gi|56909790|dbj|BAD64317.1| site-specific tyrosine recombinase [Bacillus clausii KSM-K16] Length = 297 Score = 145 bits (367), Expect = 6e-33, Method: Composition-based stats. Identities = 46/263 (17%), Positives = 99/263 (37%), Gaps = 23/263 (8%) Query: 85 GSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIRSGVESRKHTP---SSAIQFLT 138 L+ N+ S+ ++K G + K+ ++ + + K T ++ + +T Sbjct: 18 KGLSPNTIESYARDLKQYGAYLKKRGIDQFAKVDRSTLQHYLFTLKETGKSSATIARNVT 77 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRL 194 ++R L ++ R+++ +P L +E P+ + + E++ + G + + Sbjct: 78 TLRALHQFLYREKWTDHDPTLWIETPRIDKKLPGVLSIEEVDALLAAPDSSTPFGVRNKA 137 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAM------ 247 E L SG+R ++ G+ + ++ ++ K V L K L Sbjct: 138 MLELLYASGMRVTELISLGLDDVHLSMGFVRVIGKGNKERIVPLGKEATKALNTYLERGR 197 Query: 248 ----TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAG 301 + F+N+ + ++ F K A A + K S H +R AT + G Sbjct: 198 GALLKHERHDKLFVNHHGRPISRQGFWKIMKQLAKTANIEKDFSPHTLRHSFATHLLENG 257 Query: 302 ATAHELMATYGWKTVDQAETYTK 324 A + G + + YT Sbjct: 258 ADLRSVQEMLGHADLSTTQIYTH 280 >gi|138895887|ref|YP_001126340.1| site-specific tyrosine recombinase XerD [Geobacillus thermodenitrificans NG80-2] gi|196248777|ref|ZP_03147477.1| tyrosine recombinase XerD [Geobacillus sp. G11MC16] gi|134267400|gb|ABO67595.1| DNA integration/recombination/invertion protein [Geobacillus thermodenitrificans NG80-2] gi|196211653|gb|EDY06412.1| tyrosine recombinase XerD [Geobacillus sp. G11MC16] Length = 298 Score = 145 bits (367), Expect = 7e-33, Method: Composition-based stats. Identities = 45/266 (16%), Positives = 103/266 (38%), Gaps = 26/266 (9%) Query: 85 GSLAVNSRISFES-------YFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFL 137 +LA N+ IS+E Y ++ + + ++ H + + + + + L Sbjct: 16 RNLAHNTIISYERDLKKYVHYLREVEQLEAWGEVERLHILHFLKFLSEQGQSARTIARHL 75 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPR 193 S+R ++ +R++ A +P + +E P+ + + + E+++ + G + + Sbjct: 76 ASIRSFHQFLLREKMAAQDPTVHIETPQFERTLPKVLSVEEVEALLAAPQTNTPFGLRDK 135 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAM----- 247 E L +G+R S+ + + + + ++ K V + ++ LA Sbjct: 136 AMLEVLYATGMRVSELVQLNLGDVHLTMGFVRCYGKGRKERIVPIGRMALEALARYLEYG 195 Query: 248 -------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISA 298 E F+N+ Q++ F K + +AG+ K + H +R AT Sbjct: 196 RPQLVNPRKRATEALFLNHYGQRLTRQGFWKILKRLSKEAGIEKELTPHTLRHSFATHLL 255 Query: 299 DAGATAHELMATYGWKTVDQAETYTK 324 + GA + G + + YT Sbjct: 256 ENGADLRAVQELLGHADISTTQMYTH 281 >gi|34222990|sp|Q93C64|XERD_LACCA RecName: Full=Tyrosine recombinase xerD gi|15778434|gb|AAL07436.1|AF413208_1 tyrosine recombinase [Lactobacillus casei] Length = 293 Score = 145 bits (367), Expect = 7e-33, Method: Composition-based stats. Identities = 42/271 (15%), Positives = 96/271 (35%), Gaps = 23/271 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH--IRSGVESRKHT--PSSAIQFLTSM 140 LA +++S++ + D I++ ++ + T P+S + ++++ Sbjct: 16 RGLARTTQVSYQQDLTTFMAWLSDQKQTTFPEDFGVIQAFLKHQNDTKAPASVSRMISAL 75 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRLAF 196 R +++ +R+ + +P ++ PK+ + ++ + G + R F Sbjct: 76 RKFYRFLLREGAIKSDPMTKIDTPKKAQHLPATLSGTEIDALMAKPDTTKPLGLRDRAIF 135 Query: 197 EFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKE- 253 E + +GLR S+ + HL N+ + T K V + + Sbjct: 136 ELMYATGLRVSEVVGLRLDQLHLAMNLLQV-TGKGDKERLVPISPQAADWVNRYLQESRP 194 Query: 254 ---------TFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302 F+N + KA G+ K + H +R AT + GA Sbjct: 195 RLIKHQQPKAVFVNFHGHALTRQVIWKNLKAYIASVGIEKDVTPHTLRHSFATRLLENGA 254 Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGI 333 + G + + YT +++ + + Sbjct: 255 DLRVVQELLGHSDISTTQIYTHLSNQHLVAV 285 >gi|227524454|ref|ZP_03954503.1| site-specific DNA tyrosine recombinase XerD [Lactobacillus hilgardii ATCC 8290] gi|227088413|gb|EEI23725.1| site-specific DNA tyrosine recombinase XerD [Lactobacillus hilgardii ATCC 8290] Length = 295 Score = 145 bits (367), Expect = 7e-33, Method: Composition-based stats. Identities = 41/263 (15%), Positives = 88/263 (33%), Gaps = 23/263 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDF-----DYRKITTKHIRSGVESRKHTPSSAIQFLTS 139 L+ N+ ++ + I + + ++ K + ++ I+ ++S Sbjct: 16 RGLSENTIKGYQQDLSEAIHFFQKTTKDISKVDQFLILNYLENLQQEKKSRNTVIRTVSS 75 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRLA 195 +R F++ + V +P L V+ PK+ + ++ + S G + R Sbjct: 76 LRNFFRYLAQFGVVPDDPMLKVDSPKQSKTLPDVLSVSEVNKLLSMPNVSKPLGVRDRAM 135 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIITVELPDGFMKL---------- 244 E L +GLR S+ + L + K + + D + Sbjct: 136 LETLYATGLRVSELVNLRLVDLHLPMKLIQTVGKGDRERIIPIGDVAIDWITQYLKTTRI 195 Query: 245 -LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAG 301 L + F+N +++ K AG+ + + H +R AT + G Sbjct: 196 DLLRKRTNTDFVFLNAHGRRLTRQAIWQMIKKYVKLAGIKRHVTPHTLRHSFATHLLENG 255 Query: 302 ATAHELMATYGWKTVDQAETYTK 324 A + G + + YT Sbjct: 256 ADLRIVQELLGHADISTTQIYTH 278 >gi|206890528|ref|YP_002247908.1| tyrosine recombinase XerD [Thermodesulfovibrio yellowstonii DSM 11347] gi|206742466|gb|ACI21523.1| tyrosine recombinase XerD [Thermodesulfovibrio yellowstonii DSM 11347] Length = 294 Score = 145 bits (367), Expect = 7e-33, Method: Composition-based stats. Identities = 53/266 (19%), Positives = 106/266 (39%), Gaps = 20/266 (7%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDY-----RKITTKHIRSGVESRKHTPSSAIQFLTS 139 +L++N+ S+E+ ++ + + +K ++ + ++ +S + L+S Sbjct: 18 KALSINTVKSYENDLKNFLKWLTEQNILVLNCKKDDIVQYLLNLKEKAYSSTSIARILSS 77 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE---GSQPRLAF 196 ++ F++ + + +P ++ PK + +++++ S E + Sbjct: 78 LKQFFRFMIFDSIINHDPTEGLKSPKLWLRLPKALEIDEVKRLLSVMLESKYYLRDIAML 137 Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDG--------FMKLLAM 247 E + SGLR S+ R + + I+ + G V + +KL + Sbjct: 138 ELMYASGLRVSELVRLKLSDINFEAGFIRVKGKGDKERVVPIAQRSIDKIKNYLVKLRPV 197 Query: 248 T--PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAH 305 E F+NN Q M +F KA AGVN + H +R AT + GA Sbjct: 198 LLKKKASEYVFLNNRGQPMTRQRFWQNIKAIGRIAGVNVTPHMIRHSFATHLLEGGADLR 257 Query: 306 ELMATYGWKTVDQAETYTKGA-DRIR 330 L G + + YTK + DR+R Sbjct: 258 SLQKMLGHSDISTTQIYTKVSMDRLR 283 >gi|270264904|ref|ZP_06193168.1| DNA integration/recombination/invertion protein [Serratia odorifera 4Rx13] gi|270041202|gb|EFA14302.1| DNA integration/recombination/invertion protein [Serratia odorifera 4Rx13] Length = 299 Score = 145 bits (367), Expect = 7e-33, Method: Composition-based stats. Identities = 47/280 (16%), Positives = 96/280 (34%), Gaps = 26/280 (9%) Query: 72 KWLISEYRKSAHW--GSLAVNSRISFESYFDQIIRKSGDFDY-----RKITTKHIRSGVE 124 LI ++ A W +LA N+ S+ + + + + + + Sbjct: 6 SALIEQFL-DALWLERNLAENTLASYRLDLQALSAWLNHQNTSLLQAQALDLQAFLAERV 64 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 + + +S+ + L++MR LF++ R++ +P + PK + ++ + Sbjct: 65 AGGYKATSSARLLSAMRRLFQYLYREKLREDDPTALLASPKLPQRLPKDLSEAQVDALLQ 124 Query: 185 F----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPD 239 + + E L +GLR S+ + + ++ K V L + Sbjct: 125 APCVDQPLELRDKAMLEVLYATGLRVSELVGLTISDVSLRQGVVRVIGKGNKERLVPLGE 184 Query: 240 GFMKLLAMTPIGKETFFIN----------NDKQKMNATQFSIWFKAKATKAGVN---KSA 286 + + + +N N Q+M F K A AG++ S Sbjct: 185 EAVYWIENYLEHGRPWMVNGQALDVLFPSNRCQQMTRQTFWHRIKHYAILAGIDSERLSP 244 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 H +R AT + GA + G + + YT A Sbjct: 245 HVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA 284 >gi|145638777|ref|ZP_01794386.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae PittII] gi|148827463|ref|YP_001292216.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae PittGG] gi|145272372|gb|EDK12280.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae PittII] gi|148718705|gb|ABQ99832.1| tyrosine recombinase [Haemophilus influenzae PittGG] gi|309750267|gb|ADO80251.1| Site-specific, tyrosine recombinase XerD [Haemophilus influenzae R2866] Length = 297 Score = 145 bits (367), Expect = 7e-33, Method: Composition-based stats. Identities = 47/282 (16%), Positives = 98/282 (34%), Gaps = 26/282 (9%) Query: 73 WLISEYRKSAHW--GSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGVESR-- 126 LI + W L+ N+ S+ + D + H++ + R Sbjct: 5 ALIDLFLNEY-WIEKGLSENTVQSYRLDLTALCDWLDKNDLSLETLDAVHLQGFLGERLE 63 Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS- 184 + +S + L+++R LF++ R++Y +P + PK + + T++ + + Sbjct: 64 KGYKATSTARMLSAIRKLFQYLYREKYRVDDPSAVLSSPKLPSRLPKYLTEQQVSDLLNT 123 Query: 185 ---FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG 240 + + E L +GLR ++ ++++ ++ K V + + Sbjct: 124 PDVEVPLELRDKAMLELLYATGLRVTELVSLTIENMSVQQGVVRVIGKGNKERIVPMGEE 183 Query: 241 FMKL-----LAMTPI-----GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAH 287 L P+ + F + Q+M F K A A ++ S H Sbjct: 184 AAYWVRQFMLYGRPVLLNGQSSDVVFPSQRTQQMTRQTFWHRVKHYAILADIDADALSPH 243 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 +R AT + GA + G + + YT A Sbjct: 244 VLRHAFATHLVNHGADLRVVQMLLGHTDLSTTQIYTHVAKER 285 >gi|325571148|ref|ZP_08146720.1| integrase/recombinase XerD [Enterococcus casseliflavus ATCC 12755] gi|325156233|gb|EGC68419.1| integrase/recombinase XerD [Enterococcus casseliflavus ATCC 12755] Length = 296 Score = 145 bits (367), Expect = 7e-33, Method: Composition-based stats. Identities = 42/264 (15%), Positives = 96/264 (36%), Gaps = 24/264 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH------IRSGVESRKHTPSSAIQFLT 138 L+ N+R S++ Q + + ++ + ++ I+ ++ Sbjct: 16 RGLSQNTRASYQRDLQQYLAFLQKKQVTQWQQIDRVIVLSFLQSLQEAGKSSATVIRMVS 75 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF----KSFWSEGSQPRL 194 S+R ++ ++ + +P ++ PK++ + + +++++ + G + R Sbjct: 76 SLRRFHQFLRQERFTDHDPMQHIDSPKKQQKLPDTLSLQEVERLIETPDTRAVLGIRDRA 135 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPD-----------GFM 242 E + +GLR S+ + L ++ + T K V L D Sbjct: 136 ILEVMYATGLRVSELIGLKLNDLHLSMGLLQTTGKGDKERIVPLGDLAIQWIETYLSDAR 195 Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300 L + F+NN +++ KA +AG+ K + H +R AT + Sbjct: 196 PYLTRKTPDESHLFVNNHGTQLSRQGIWKNLKALVRQAGITKNVTPHTLRHSFATHLLEN 255 Query: 301 GATAHELMATYGWKTVDQAETYTK 324 GA + G + + YT Sbjct: 256 GADLRTVQELLGHADISTTQIYTH 279 >gi|115352658|ref|YP_774497.1| site-specific tyrosine recombinase XerD [Burkholderia ambifaria AMMD] gi|115282646|gb|ABI88163.1| tyrosine recombinase XerD [Burkholderia ambifaria AMMD] Length = 322 Score = 145 bits (367), Expect = 7e-33, Method: Composition-based stats. Identities = 49/268 (18%), Positives = 91/268 (33%), Gaps = 22/268 (8%) Query: 85 GSLAVNSRISFES---YFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSSAIQFLTSM 140 LA N+ ++ F Q + + D + + +R +S+ + L+ Sbjct: 45 HGLARNTLDAYRRDLVLFSQWLAATHDVPLDSADEAMLIGYIAARSDGKATSSNRRLSVF 104 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLAF 196 R + WAVR+ + + +P L + K+ ++ ++ G+ + R Sbjct: 105 RRYYGWAVREHHASADPTLRITSAKQAARFPSTLSEAQVEALLGAPDIGTPLGLRDRTML 164 Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------ELPDGFMKLLAM 247 E + SGLR S+ + N ++ G+ + + Sbjct: 165 ELMYASGLRVSELVTLKTVEVGLNEGVVRVMGKGSKERLVPFGEVAHGWIERYLRDARPA 224 Query: 248 T--PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGAT 303 + F+ M QF K A +A V + S H +R AT + GA Sbjct: 225 LLGARAADALFVTARGDGMTRQQFWNIIKRHAQQADVRAHLSPHTLRHAFATHLLNHGAD 284 Query: 304 AHELMATYGWKTVDQAETYTKGADRIRL 331 + G + + YT A R RL Sbjct: 285 LRVVQLLLGHSDISTTQIYTHVA-RERL 311 >gi|295706488|ref|YP_003599563.1| tyrosine recombinase XerD [Bacillus megaterium DSM 319] gi|294804147|gb|ADF41213.1| tyrosine recombinase XerD [Bacillus megaterium DSM 319] Length = 297 Score = 145 bits (367), Expect = 7e-33, Method: Composition-based stats. Identities = 40/272 (14%), Positives = 98/272 (36%), Gaps = 26/272 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFD-------YRKITTKHIRSGVESRKHTPSSAIQFL 137 LA N+ S+E + + ++ + + ++ + + + + Sbjct: 16 RGLAKNTIDSYERDLKNYAQYLEHVEQLKSFNEVTRLHIVNFLKYLSDQQKSSKTIARHV 75 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ----FKSFWSEGSQPR 193 S R ++ +R++ +P + ++ P+ + + + E+++ F + G + + Sbjct: 76 ASTRSFHQFLLREKAADTDPSVHIDTPQLERKLPKVLNAEEVEALLNVFDTSTPFGIRDK 135 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------ELPDGFMK- 243 E L +G+R S+ + + I+ G + + D Sbjct: 136 AMLELLYATGIRVSELVNLNIDDAHLTMGFIRCIGKGNKERIVPIGRLATEAIEDYLQHS 195 Query: 244 --LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299 +L + F+N+ +++ F K A++A + K + H +R AT + Sbjct: 196 RSVLTKQKEQDKALFVNHHGRRLTRQGFWKILKKLASEAKIEKELTPHTLRHSFATHLLE 255 Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRL 331 GA + G + + YT + RL Sbjct: 256 NGADLRAVQEMLGHADISTTQIYTH-VTKARL 286 >gi|160876749|ref|YP_001556065.1| tyrosine recombinase XerD [Shewanella baltica OS195] gi|160862271|gb|ABX50805.1| tyrosine recombinase XerD [Shewanella baltica OS195] Length = 309 Score = 145 bits (367), Expect = 8e-33, Method: Composition-based stats. Identities = 51/275 (18%), Positives = 102/275 (37%), Gaps = 23/275 (8%) Query: 85 GSLAVNSRISFE---SYFDQIIRKSGD--FDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139 L+ N+ ++ +FD+ + G + + + + +S+ + L+S Sbjct: 31 KGLSDNTLSAYRTDLRHFDRYQAQQGVTLLSVSQADVRAYLAFRVEQDFARTSSARLLSS 90 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195 +R + + V+ + ++ +P VE PK ++ + + S + + + Sbjct: 91 LRRFYTYLVQTKQISADPMALVESPKLTRHLPDSLSESQVDRLLSEPNVEDAVECRDKAM 150 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPD-------GFMKLLAM 247 E L +GLR S+ ++ + ++ K G V L + +MK Sbjct: 151 LELLYATGLRVSELVGLTMEQMSLRQGLVRIVGKGGKERLVPLGELAITEVESYMKFARQ 210 Query: 248 TPIGK---ETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGA 302 +G + F + Q M F K A +AG+ S H +R AT + GA Sbjct: 211 ELLGNKQSDVVFPSKRGQMMTRQTFWHRIKLYALRAGIETALSPHTLRHAFATHLLNHGA 270 Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 + G + + YT A R RL + + Sbjct: 271 DLRVVQLLLGHSDLSTTQIYTHVA-RARLQELHQQ 304 >gi|157692850|ref|YP_001487312.1| site-specific tyrosine recombinase XerD [Bacillus pumilus SAFR-032] gi|157681608|gb|ABV62752.1| tyrosine recombinase [Bacillus pumilus SAFR-032] Length = 296 Score = 145 bits (367), Expect = 8e-33, Method: Composition-based stats. Identities = 40/264 (15%), Positives = 104/264 (39%), Gaps = 24/264 (9%) Query: 85 GSLAVNSRISFESYFDQII------RKSGD-FDYRKITTKHIRSGVESRKHTPSSAIQFL 137 L+ N+ +S++ + + D D ++ H ++ + ++++ L Sbjct: 16 RGLSENTIVSYKRDLQNYLSFLMTHEQLSDIKDVTRLHIIHYLKQLKEEGKSSKTSVRHL 75 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPR 193 +S+R ++ +R++ +P ++E K + + + + ++++ ++ + + + Sbjct: 76 SSIRSFHQFLLREKVTKDDPSWNIETQKTERKLPKVLSLGEVEKLLDTPNQHTPFDYRDK 135 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLA------ 246 E L +G+R S+ + + + I+ K V + + + Sbjct: 136 AMLELLYATGIRVSEMLDLTLADVHLTMGFIRCFGKGRKERIVPIGEAAASAIEEYLEKG 195 Query: 247 ----MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300 + + F+N+ +KM+ F K +A +AG+ K + H +R AT + Sbjct: 196 RGKLLKKQPADALFLNHHGKKMSRQGFWKNLKKRALEAGIQKELTPHTLRHSFATHLLEN 255 Query: 301 GATAHELMATYGWKTVDQAETYTK 324 GA + G + + YT Sbjct: 256 GADLRAVQEMLGHADISTTQIYTH 279 >gi|262274923|ref|ZP_06052734.1| site-specific recombinase XerD [Grimontia hollisae CIP 101886] gi|262221486|gb|EEY72800.1| site-specific recombinase XerD [Grimontia hollisae CIP 101886] Length = 298 Score = 145 bits (366), Expect = 8e-33, Method: Composition-based stats. Identities = 48/279 (17%), Positives = 102/279 (36%), Gaps = 26/279 (9%) Query: 73 WLISEYRKSAHW--GSLAVNSRISFESYFDQII---RKSGDF--DYRKITTKHIRSGVES 125 L+ ++ A W L+ N+ S+ + ++ K G+ + + + Sbjct: 6 ALVEQFL-DAMWMERGLSENTLASYRNDLTKLCQWLDKDGELLVTVACSKLQEYQHWLFD 64 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + SS + L++MR LF++ R++ +P ++ PK + ++ ++ Sbjct: 65 LNYKQSSRARMLSAMRRLFQYLYREKLREDDPTATLISPKLPKRLPKDLSEAQVEALLDA 124 Query: 186 WS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG 240 + + + E L +GLR ++ +++ ++ K G V + + Sbjct: 125 PNVEDVIELRDKAMLELLYATGLRVTELISLTTENVSLRQGVVRVIGKGGKERLVPMGEA 184 Query: 241 FMKLL-----AMTPI-----GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAH 287 ++ L P + FF + + M F K A AG++ S H Sbjct: 185 AIEWLEHYMAHSRPALLGEQSSDVFFPSRRARMMTRQTFWHRIKFYAALAGIDGEMLSPH 244 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 +R AT + GA + G + + YT A Sbjct: 245 VLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA 283 >gi|237721804|ref|ZP_04552285.1| integrase [Bacteroides sp. 2_2_4] gi|299144803|ref|ZP_07037871.1| tyrosine recombinase XerD [Bacteroides sp. 3_1_23] gi|229448673|gb|EEO54464.1| integrase [Bacteroides sp. 2_2_4] gi|298515294|gb|EFI39175.1| tyrosine recombinase XerD [Bacteroides sp. 3_1_23] Length = 319 Score = 145 bits (366), Expect = 8e-33, Method: Composition-based stats. Identities = 52/275 (18%), Positives = 102/275 (37%), Gaps = 24/275 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQI-----IRKSGDFDYRKITTKHIRSGVESRK 127 +I +Y++ SL++N+ ++ + D++ + D + +G+ Sbjct: 16 IIRKYQQYLKLEKSLSLNTLDAYLTDLDKLMSFLTLEGINVLDVCLSDLQRFAAGLHDIG 75 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 P S + L+ ++ F++ + + Y+ +P +E PK + T E++ + S Sbjct: 76 IHPRSQARILSGIKSFFRFLILENYLEADPSELLEGPKIGFKLPEVLTVEEIDRIISAVD 135 Query: 188 ----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT-VELPDGFM 242 EG + R E L GLR S+ + L + IK + G+ V + + Sbjct: 136 RSKAEGQRNRAILETLYSCGLRVSELITLKLSDLYFDEGFIKVEGKGSKQRLVPISPRAI 195 Query: 243 KLLAMTPIG-----------KETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289 + + F + ++ K A KAG+ K S H Sbjct: 196 NEIKLYIPDRNQIEVKKGHEDFVFVSQRRGKGLSRIMIFHMIKELAEKAGITKNISPHTF 255 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 R AT + GA + G +++ E YT Sbjct: 256 RHSFATHLLEGGANLRAIQCMLGHESIATTEIYTH 290 >gi|194016964|ref|ZP_03055577.1| tyrosine recombinase XerD [Bacillus pumilus ATCC 7061] gi|194011570|gb|EDW21139.1| tyrosine recombinase XerD [Bacillus pumilus ATCC 7061] Length = 296 Score = 145 bits (366), Expect = 8e-33, Method: Composition-based stats. Identities = 42/264 (15%), Positives = 106/264 (40%), Gaps = 24/264 (9%) Query: 85 GSLAVNS----RISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH---TPSSAIQFL 137 L+ N+ + ++Y ++ D + +T HI ++ K + ++++ L Sbjct: 16 RGLSENTIVSYKRDLQNYLSFLMTHEQLTDIKDVTRLHIIHYLKKLKEEGKSSKTSVRHL 75 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPR 193 +S+R ++ +R++ +P ++E K + + + + ++++ ++ + + + Sbjct: 76 SSIRSFHQFLLREKVTTDDPSWNIETQKTERKLPKVLSLGEVEKLLDTPNQHTPFDYRDK 135 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLA------ 246 E L +G+R S+ + + + I+ K V + + + Sbjct: 136 AMLELLYATGIRVSEMLDLTLADVHLTMGFIRCFGKGRKERIVPIGEAAASAIEEYLEKG 195 Query: 247 ----MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300 + + F+N+ +KM+ F K +A +AG+ K + H +R AT + Sbjct: 196 RSKLLKKQPADALFLNHHGKKMSRQGFWKNLKKRALEAGIQKELTPHTLRHSFATHLLEN 255 Query: 301 GATAHELMATYGWKTVDQAETYTK 324 GA + G + + YT Sbjct: 256 GADLRAVQEMLGHADISTTQIYTH 279 >gi|160892553|ref|ZP_02073343.1| hypothetical protein CLOL250_00082 [Clostridium sp. L2-50] gi|156865594|gb|EDO59025.1| hypothetical protein CLOL250_00082 [Clostridium sp. L2-50] Length = 292 Score = 145 bits (366), Expect = 8e-33, Method: Composition-based stats. Identities = 45/270 (16%), Positives = 98/270 (36%), Gaps = 21/270 (7%) Query: 88 AVNSRISFESYFDQII---RKSGDFDYRKITTKH---IRSGVESRKHTPSSAIQFLTSMR 141 + N+ S+ + R++G D R I + +E + ++ + + S++ Sbjct: 19 SENTVASYRRDLVKFSDFYRENGTEDIRSINETNINTYILYLEKNGKSMATVSRSIASIK 78 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRLAFE 197 F + R++ + +P ++++ PK + + T E++ + + + R E Sbjct: 79 SFFGFLFREKILMDDPSVNIKPPKIEKKMPDILTIEEVNRLLDQPGDQSPKEIRDRAMLE 138 Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIG------ 251 L +G+R S+ + + + I+ + + D + L Sbjct: 139 LLYATGIRVSELVTLKITDVNLKMGYIECHDLRKSRIIPIEDSAQRALDNYISNVRGDMC 198 Query: 252 --KETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHEL 307 E F N M F K A KAG++K + H +R A+ + GA + Sbjct: 199 KNSEYLFSNCKGTPMTRQGFWKIIKVYADKAGIDKDITPHMIRHSFASHLVNNGADLKAV 258 Query: 308 MATYGWKTVDQAETYTKGADRIRLGIKNSR 337 G + + Y + RL + + Sbjct: 259 QEMLGHADISTTQIYLNS-KQSRLKEEYQK 287 >gi|260775484|ref|ZP_05884381.1| site-specific recombinase XerD [Vibrio coralliilyticus ATCC BAA-450] gi|260608665|gb|EEX34830.1| site-specific recombinase XerD [Vibrio coralliilyticus ATCC BAA-450] Length = 302 Score = 145 bits (366), Expect = 8e-33, Method: Composition-based stats. Identities = 44/265 (16%), Positives = 102/265 (38%), Gaps = 23/265 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITT-----KHIRSGVESRKHTPSSAIQFLTS 139 L+ N+ S+ + ++++ + +YR + +S + + + +S + L++ Sbjct: 23 RGLSENTLASYRNDLSKLLQWMTENNYRLDFISLSGLQDYQSWLMDQGYKQTSRARMLSA 82 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLA 195 +R LF++ R++ A +P + PK + ++E ++ + + + Sbjct: 83 IRRLFQYLHREKVRADDPSALLVSPKLPKRLPKDLSEEQVEALLNAPDPNDAMELRDKAM 142 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLAMTP----- 249 E L +GLR ++ ++++ ++ T K G V + + + + Sbjct: 143 LELLYATGLRVTELVSLTMENVSLRQGVVRVTGKGGKERLVPMGENAVDWIETFIQQGRS 202 Query: 250 -----IGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAG 301 + F + ++M F K A AG++ S H +R AT + G Sbjct: 203 ELLGETTSDVVFPSKRARQMTRQTFWYRIKHYAVLAGIDTEMLSPHVLRHAFATHLLNYG 262 Query: 302 ATAHELMATYGWKTVDQAETYTKGA 326 A + G + + YT A Sbjct: 263 ADLRVVQMLLGHSDLSTTQIYTHVA 287 >gi|283479632|emb|CAY75548.1| Tyrosine recombinase xerD [Erwinia pyrifoliae DSM 12163] Length = 316 Score = 145 bits (366), Expect = 8e-33, Method: Composition-based stats. Identities = 47/284 (16%), Positives = 100/284 (35%), Gaps = 27/284 (9%) Query: 73 WLISEYRKSAHW--GSLAVNSRISFESYFDQIIRKSGD-----FDYRKITTKHIRSGVES 125 LI ++ A W +LA N+ S+ + + + + Sbjct: 24 DLIEQFL-DALWIERNLAQNTVDSYRLDLRSLGDWLAHQQLSLLNVEVFNLQEFLAQRLE 82 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + +S+ + L++MR LF++ R++ +P + PK + ++ +++ Sbjct: 83 GGYKATSSARLLSAMRRLFQYLYREKLREDDPSALLSSPKLPQRLPKDLSEAQVERLLQA 142 Query: 186 ----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG 240 + + E L +GLR ++ + + ++ K V + + Sbjct: 143 PCLEQPIELRDKAMLELLYATGLRVTELVGLTLSDISLRQGVVRVIGKGNKERLVPMGEE 202 Query: 241 FMKLLAMTPIGKETFFIN----------NDKQKMNATQFSIWFKAKATKAGVN---KSAH 287 + + + +N N ++M F K AT AG++ S H Sbjct: 203 AVHWIEQYIEYGRPWLLNGQTIDVLFPSNRAKQMTRQTFWHRIKHYATLAGIDSDKLSPH 262 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIR 330 +R AT + GA + G + + YT A +R+R Sbjct: 263 VLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLR 306 >gi|228992829|ref|ZP_04152754.1| Tyrosine recombinase xerD [Bacillus pseudomycoides DSM 12442] gi|228998874|ref|ZP_04158459.1| Tyrosine recombinase xerD [Bacillus mycoides Rock3-17] gi|228760890|gb|EEM09851.1| Tyrosine recombinase xerD [Bacillus mycoides Rock3-17] gi|228766878|gb|EEM15516.1| Tyrosine recombinase xerD [Bacillus pseudomycoides DSM 12442] Length = 296 Score = 145 bits (366), Expect = 8e-33, Method: Composition-based stats. Identities = 45/271 (16%), Positives = 104/271 (38%), Gaps = 25/271 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFD----YRKITTKHIRSGVESRKHTPSSAI---QFL 137 LA N+ +S+E ++ + + ++T HI + ++ K S+ + + Sbjct: 16 KGLAKNTVVSYERDLKSYVKYLQHVEQIKTFHEVTRIHIVNFLQYLKENGKSSKTLARHI 75 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPR 193 S+R ++ +R+ V +P + +E P+ + + + + +++ E G + + Sbjct: 76 ASIRSFHQFLLRERVVEHDPSVHIETPQGERKLPKVLSVSEVEALLQTPKETSAFGIRDK 135 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLAMTPIGK 252 E L +GLR S+ ++ + + ++ K + L + + Sbjct: 136 AMLELLYATGLRVSELIALNLEDVHLTMGFVRCVGKGNKERIIPLGSLATEAIQRYIEKG 195 Query: 253 ----------ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300 + F+N+ +++ F K A +A + K + H +R AT + Sbjct: 196 RKELMGKKTVDALFLNHHGNRLSRQGFWKILKRLAKEANIEKELTPHTLRHSFATHLLEN 255 Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRL 331 GA + G + + YT + RL Sbjct: 256 GADLRAVQEMLGHADISTTQIYTH-VSKARL 285 >gi|255689937|ref|ZP_05413612.1| tyrosine recombinase XerD [Bacteroides finegoldii DSM 17565] gi|260624543|gb|EEX47414.1| tyrosine recombinase XerD [Bacteroides finegoldii DSM 17565] Length = 319 Score = 145 bits (366), Expect = 8e-33, Method: Composition-based stats. Identities = 47/275 (17%), Positives = 99/275 (36%), Gaps = 24/275 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQII-----RKSGDFDYRKITTKHIRSGVESRK 127 +I +Y++ SL+ N+ ++ + D+++ D + +G+ Sbjct: 16 IIRKYQQYLKLEKSLSPNTLEAYLTDLDKLLSFLTLEGINILDVCLADLQRFAAGLHDIG 75 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 P S + L+ ++ F++ + +Y+ +P +E P + T E++ + + Sbjct: 76 IHPRSQARILSGIKSFFRFLIMADYLEADPSELLESPNIGLKLPEVLTVEEIDRIIATVD 135 Query: 188 ----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFM 242 EG + R E L GLR S+ + L + IK + G + + + Sbjct: 136 RSKAEGQRNRAILETLYSCGLRVSELVNLKLSDLYFDEGFIKVEGKGNKQRLIPISPRAI 195 Query: 243 KLLAMTPIG-----------KETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289 + + F ++++ K A +A + K S H Sbjct: 196 NEIKLYFTDRNQIEVKSGHEDFVFISLRRGKRLSRIMIFHMIKELAQQASITKNISPHTF 255 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 R AT + GA + G +++ E YT Sbjct: 256 RHSFATHLLEGGANLRAIQCMLGHESIATTEIYTH 290 >gi|330432635|gb|AEC17694.1| site-specific tyrosine recombinase XerD [Gallibacterium anatis UMN179] Length = 297 Score = 145 bits (366), Expect = 8e-33, Method: Composition-based stats. Identities = 45/276 (16%), Positives = 96/276 (34%), Gaps = 24/276 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRK-----ITTKHIRSGVESRKHTPSSAIQFLTS 139 +L+ N+ S+ S + + + + + +S + L++ Sbjct: 18 KNLSQNTIASYRSDLKFLSEWLEKHHLTLQQVQYLDLQAFLGERLQQGYKATSYSRMLSA 77 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRLA 195 MR LF++ +++Y NPC + PK + T+ + + + + + Sbjct: 78 MRKLFQYLYQEKYREDNPCSLLTSPKLPARLPKYLTESQVTDLLNTPATENALELRDKAM 137 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG----------FMKL 244 E L +GLR S+ ++ ++ K V + + + + Sbjct: 138 LELLYATGLRVSELVSLTTNNINLQQGVVRVIGKADKERLVPIGEEANYWVQQFILYGRA 197 Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKFSATISADAG 301 + + F + + M F K A+ A ++ S H +R AT + G Sbjct: 198 ELLGGQSSDVLFPSRQGKLMTRQTFWYRIKHYASLANIDADKLSPHVLRHAFATHLVNHG 257 Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 A + G + + YT A + RL +S+ Sbjct: 258 ADLRVVQMLLGHSDLSTTQIYTHVA-KERLKQLHSK 292 >gi|313632584|gb|EFR99578.1| tyrosine recombinase XerD [Listeria seeligeri FSL N1-067] gi|313637133|gb|EFS02675.1| tyrosine recombinase XerD [Listeria seeligeri FSL S4-171] Length = 297 Score = 145 bits (366), Expect = 8e-33, Method: Composition-based stats. Identities = 49/288 (17%), Positives = 103/288 (35%), Gaps = 33/288 (11%) Query: 73 WLISEYRKSAHW----GSLAVNSRISFESYFDQIIRKSGDF----DYRKITTKHIRSGVE 124 LI ++ H+ L+ N+ ++E + D + I + Sbjct: 3 DLIDDFL---HFLIVEKGLSANTIKAYERDLHYFVSYINTARPLTDPNTLERSDIVGFMA 59 Query: 125 ---SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ- 180 + S +++ S+R F + + ++ +P + +E PK+ + +D++ Sbjct: 60 FARKEGKSARSVARYIASLRSFFHYLMHDGKMSHDPMIQIETPKQAQGLPKVLNLDDVEL 119 Query: 181 ---QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE 236 + S G + + E L +GLR ++ + + L + I+T K + Sbjct: 120 LLSSSDTSTSLGLRDQAMMEILYATGLRVTELVQLKMDDLHLQMGFIQTIGKGDKERIIP 179 Query: 237 L-----------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284 L + L + F+N+ Q + F K A ++G+ K Sbjct: 180 LGKTATTVLEQYLEEARPKLRRPKYRNDFVFLNHHGQGLTRQGFWKILKGIAKESGIEKP 239 Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 + H +R AT + GA + G + + YT ++RL Sbjct: 240 ITPHTLRHSFATHLLENGADLRSVQELLGHADISTTQIYTH-VTKLRL 286 >gi|157372126|ref|YP_001480115.1| site-specific tyrosine recombinase XerD [Serratia proteamaculans 568] gi|157323890|gb|ABV42987.1| tyrosine recombinase XerD [Serratia proteamaculans 568] Length = 299 Score = 145 bits (366), Expect = 8e-33, Method: Composition-based stats. Identities = 47/280 (16%), Positives = 96/280 (34%), Gaps = 26/280 (9%) Query: 72 KWLISEYRKSAHW--GSLAVNSRISFESYFDQI-----IRKSGDFDYRKITTKHIRSGVE 124 LI ++ A W +LA N+ S+ + + + + + + + Sbjct: 6 SALIEQFL-DALWLERNLAENTLASYRLDLQALGAWLNQQNTSLLQAQALDLQAFLADRV 64 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 + +S+ + L++MR LF++ R+ + +P + PK + ++ + Sbjct: 65 EGGYKATSSARLLSAMRRLFQYLYRENMRSDDPTALLASPKLPQRLPKDLSEAQVDALLK 124 Query: 185 F----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPD 239 + + E L +GLR S+ + + ++ K V L + Sbjct: 125 APCVDQPLELRDKAMLEVLYATGLRVSELVGLTISDVSLRQGVVRVIGKGNKERLVPLGE 184 Query: 240 GFMKLLAMTPIGKETFFIN----------NDKQKMNATQFSIWFKAKATKAGVN---KSA 286 + + + +N N Q+M F K A AG++ S Sbjct: 185 EAVYWIENYLEHGRPWMVNGQALDVLFPSNRSQQMTRQTFWHRIKHYAILAGIDSERLSP 244 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 H +R AT + GA + G + + YT A Sbjct: 245 HVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA 284 >gi|330427289|gb|AEC18623.1| site-specific tyrosine recombinase XerD [Pusillimonas sp. T7-7] Length = 282 Score = 145 bits (366), Expect = 9e-33, Method: Composition-based stats. Identities = 48/275 (17%), Positives = 93/275 (33%), Gaps = 24/275 (8%) Query: 86 SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT-----PSSAIQFLTSM 140 LA N+ ++ + + + ++A + L ++ Sbjct: 4 GLAQNTLSAYRRDLSAFALWLHAKPGKTLEQADAADIQDWFAAKHASTKATTANRRLAAL 63 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRLAF 196 + + WA+RQ VA +PCL++ K+ + +++ + G + R Sbjct: 64 KRYYLWAMRQGLVAKDPCLTLRAAKQAARFPKTMSEDQVDALLQAPDDNSPLGLRDRAML 123 Query: 197 EFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMTP----- 249 E L +GLR S+ + + + + K G V L D + + + Sbjct: 124 ETLYATGLRVSELINLELLDVSLTEGVVRVTQGKGGKDRLVPLGDEALHWIDLYAKQSRP 183 Query: 250 -----IGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGA 302 F+ M F + K A A ++ S H +R AT + GA Sbjct: 184 GLLGQRRCNALFVTARAAAMTRQSFWLIVKKYAALADIHTPLSPHVLRHAFATHLLNHGA 243 Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 + G + + YT A R RL +++ Sbjct: 244 DLRVVQMLLGHADISTTQIYTHVA-RERLKTMHAK 277 >gi|196251170|ref|ZP_03149847.1| integrase family protein [Geobacillus sp. G11MC16] gi|196209334|gb|EDY04116.1| integrase family protein [Geobacillus sp. G11MC16] Length = 310 Score = 145 bits (366), Expect = 9e-33, Method: Composition-based stats. Identities = 44/276 (15%), Positives = 97/276 (35%), Gaps = 22/276 (7%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYR--------KITTKHIRS 121 T + L+ + + +L ++ + S + I+ + + + ++I Sbjct: 13 TFEELLEIFIEDCELRNLREHTIKYYRSELNAFIKLLKEQEIELRVSEWTGETIKRNIIM 72 Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 ++ + S L ++R F + + + NP ++ K + + + + ++ Sbjct: 73 YMKEKGLKTVSINSRLRALRAFFNFLEGRNLIKSNPMKDIKLLKDRKRIVETFDNQQIKA 132 Query: 182 FKSFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITV 235 G + LL +G+R ++ + + + I+ K G V Sbjct: 133 LFKACDLRTFVGLRDYTIMMLLLETGVRVNELVGIKTTDIIWEQKVIRIRNTKGGFERFV 192 Query: 236 ELPD----GFMKLLA-MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAH 287 + D K +A + + FI D ++ Q K KAG+ S H Sbjct: 193 PIQDKMINQLKKYIAVRGSVDTDYLFITRDDTPLSKKQVQDRIKEYGKKAGIKNVRCSPH 252 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 R A + GA A +L A G +++ + Y Sbjct: 253 TFRHTFAKLCVLNGANAFQLQAILGHTSLEMTKVYV 288 >gi|226951750|ref|ZP_03822214.1| site-specific tyrosine recombinase [Acinetobacter sp. ATCC 27244] gi|226837540|gb|EEH69923.1| site-specific tyrosine recombinase [Acinetobacter sp. ATCC 27244] Length = 306 Score = 145 bits (366), Expect = 9e-33, Method: Composition-based stats. Identities = 55/299 (18%), Positives = 107/299 (35%), Gaps = 20/299 (6%) Query: 57 KREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF---DQIIRKSGDFDYRK 113 K+ I + P L +L +R +++ ++R ++ S ++ R + + Sbjct: 4 KKPRIPTAVSIPENLSFL-QGFRDYLVAQTVSPHTRNAYLSDLIQCSELHRTASLPQWSS 62 Query: 114 ITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173 + + +P S + L+++R +K+ Q+ NP S PK + Sbjct: 63 EDIGDVLIELTKAGKSPRSIARCLSALRQFYKFLREQKLREDNPVASHHSPKIGRALPKD 122 Query: 174 WTKEDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQK 228 +++D++ + G + R FE L GLR S+ ++ + ++ T K Sbjct: 123 LSEQDVEALINAPDISTTLGLRDRAMFEVLYACGLRVSELLNLRLELINLKQGFVRITGK 182 Query: 229 TGTIITVELP----DGFMKLLAMT-----PIGKETFFINNDKQKMNATQFSIWFKAKATK 279 V L D K LA + + F+ M+ F K A + Sbjct: 183 GNKERLVPLGQYACDWIEKYLAESRPQLYKSNTDYLFLTQHGGIMSRQNFWYAIKRYALQ 242 Query: 280 AGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336 A + S H +R AT + GA + G + + YT A + + Sbjct: 243 ANIQAELSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQHRMQALHHQ 301 >gi|292487142|ref|YP_003530012.1| tyrosine recombinase xerD [Erwinia amylovora CFBP1430] gi|292900477|ref|YP_003539846.1| integrase/recombinase [Erwinia amylovora ATCC 49946] gi|291200325|emb|CBJ47453.1| integrase/recombinase [Erwinia amylovora ATCC 49946] gi|291552559|emb|CBA19604.1| Tyrosine recombinase xerD [Erwinia amylovora CFBP1430] gi|312171246|emb|CBX79505.1| Tyrosine recombinase xerD [Erwinia amylovora ATCC BAA-2158] Length = 297 Score = 145 bits (366), Expect = 9e-33, Method: Composition-based stats. Identities = 48/284 (16%), Positives = 100/284 (35%), Gaps = 27/284 (9%) Query: 73 WLISEYRKSAHW--GSLAVNSRISFESYFDQIIRKSGDFDYRKITT-----KHIRSGVES 125 LI ++ A W +LA N+ S+ + + + + Sbjct: 5 DLIEQFL-DALWIERNLAQNTVDSYRLDLRSLGDWLAHQQLSLLNVEVANLQEFLAQRLE 63 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + SS+ + L++MR LF++ R++ +P + PK + ++ +++ Sbjct: 64 GGYKASSSARLLSAMRRLFQYLYREKLRDDDPSALLSSPKLPQRLPKDLSEAQVERLLQA 123 Query: 186 ----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDG 240 + + E L +GLR ++ + + ++ G V + + Sbjct: 124 PCLDLPIELRDKAMLELLYATGLRVTELVGLTLSDISLRQGVVRVMGKGNKERLVPMGEE 183 Query: 241 FMKLLAMTPIGKETFFIN----------NDKQKMNATQFSIWFKAKATKAGVN---KSAH 287 + + + +N N ++M F K AT AG++ S H Sbjct: 184 AVHWIEQFIEYGRPWLLNGQTIDVLFPSNRAKQMTRQTFWHRIKHYATLAGIDSEKLSPH 243 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIR 330 +R AT + GA + G + + YT A +R+R Sbjct: 244 VLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLR 287 >gi|153002033|ref|YP_001367714.1| tyrosine recombinase XerD [Shewanella baltica OS185] gi|151366651|gb|ABS09651.1| tyrosine recombinase XerD [Shewanella baltica OS185] Length = 309 Score = 145 bits (366), Expect = 9e-33, Method: Composition-based stats. Identities = 51/275 (18%), Positives = 102/275 (37%), Gaps = 23/275 (8%) Query: 85 GSLAVNSRISFE---SYFDQIIRKSGD--FDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139 L+ N+ ++ +FD+ + G + + + + +S+ + L+S Sbjct: 31 KGLSDNTLSAYRTDLRHFDRYQAQQGVTLLAVSQADVRAYLAFRVEQDFARTSSARLLSS 90 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195 +R + + V+ + ++ +P VE PK ++ + + S + + + Sbjct: 91 LRRFYTYLVQTKQISADPMALVESPKLTRHLPDSLSESQVDRLLSEPNVEDAVECRDKAM 150 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPD-------GFMKLLAM 247 E L +GLR S+ ++ + ++ K G V L + +MK Sbjct: 151 LELLYATGLRVSELVGLTMEQMSLRQGLVRIVGKGGKERLVPLGELAITEVESYMKFARQ 210 Query: 248 TPIGK---ETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGA 302 +G + F + Q M F K A +AG+ S H +R AT + GA Sbjct: 211 ELLGNKQSDVVFPSKRGQMMTRQTFWHRIKLYALRAGIETALSPHTLRHAFATHLLNHGA 270 Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 + G + + YT A R RL + + Sbjct: 271 DLRVVQLLLGHSDLSTTQIYTHVA-RARLQELHQQ 304 >gi|99078559|ref|YP_611817.1| phage integrase [Ruegeria sp. TM1040] gi|99035697|gb|ABF62555.1| phage integrase [Ruegeria sp. TM1040] Length = 197 Score = 145 bits (366), Expect = 9e-33, Method: Composition-based stats. Identities = 40/161 (24%), Positives = 65/161 (40%), Gaps = 4/161 (2%) Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238 + ++ L FE L +G R SD R H++ + KT + Sbjct: 30 IAAYREHAD--GLALLIFELALGTGQRASDLTRMEWGHIEVGRIWVTQGKTNVRFWIPFT 87 Query: 239 DGFMKLLAMTPIGKETFFIN-NDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATI 296 +LA K F + ++N Q AG+ + S HG+R +A Sbjct: 88 KRLSSVLAGVDTSKSRFILTDESGHQLNYDQLQKQVIRVRRAAGLMDYSLHGLRDSAAGE 147 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 A+AG T H++ A G K++ + Y+KGA + RL I+ Sbjct: 148 LAEAGCTDHQIAAITGHKSLSMVQKYSKGASQKRLAIEAQN 188 >gi|169634632|ref|YP_001708368.1| site-specific tyrosine recombinase [Acinetobacter baumannii SDF] gi|169153424|emb|CAP02561.1| site-specific tyrosine recombinase [Acinetobacter baumannii] Length = 306 Score = 145 bits (366), Expect = 9e-33, Method: Composition-based stats. Identities = 55/294 (18%), Positives = 104/294 (35%), Gaps = 20/294 (6%) Query: 55 TPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF---DQIIRKSGDFDY 111 K+ I SP + P L +L +R +++ ++R ++ S +I +K+ D+ Sbjct: 2 INKKPRIPSPVQIPEHLSFL-QGFRDYLVAQTVSPHTRNAYLSDLIQCSEIHKKNRLPDW 60 Query: 112 RKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171 + + +P S + L+++R +K Q+ + NP + PK Sbjct: 61 TSDDISDVLIELTKVGKSPRSIARCLSALRQFYKSLREQKLRSDNPVATHHSPKIGRALP 120 Query: 172 RPWTKEDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-T 226 + ++ED++ G + R FE L GLR S+ ++ + ++ T Sbjct: 121 KDLSEEDVEALIQAPDITTALGLRDRAMFEVLYACGLRVSELLNLRLELINLKQGYLRIT 180 Query: 227 QKTGTIITVELPDGFMKLLAMT---------PIGKETFFINNDKQKMNATQFSIWFKAKA 277 K V L + + F+ M+ F K A Sbjct: 181 GKGNKERLVPLGQYACDWVERYLNEARPQLYKSSTDYLFLTQHGGIMSRQNFWYAIKRYA 240 Query: 278 TKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 +A + S H +R AT + GA + G + + YT A Sbjct: 241 LQANIQAELSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQVR 294 >gi|332160506|ref|YP_004297083.1| site-specific tyrosine recombinase XerD [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|318607025|emb|CBY28523.1| tyrosine recombinase XerD [Yersinia enterocolitica subsp. palearctica Y11] gi|325664736|gb|ADZ41380.1| site-specific tyrosine recombinase XerD [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330863449|emb|CBX73568.1| tyrosine recombinase xerD [Yersinia enterocolitica W22703] Length = 299 Score = 145 bits (366), Expect = 9e-33, Method: Composition-based stats. Identities = 55/284 (19%), Positives = 110/284 (38%), Gaps = 27/284 (9%) Query: 74 LISEYRKSAHW--GSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGVESR--- 126 LI ++ A W +LA N+ S+ + + D D + ++ ++S + R Sbjct: 8 LIEQFL-DALWLERNLAENTLASYRLDLHALSGWLEHHDSDLLRAGSQDLQSFLAERIEG 66 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF- 185 + +S+ + L++MR LF++ R++ +P + PK + ++ + + Sbjct: 67 GYKSTSSARLLSAMRRLFQYLYREKLREDDPTALLSSPKLPQRLPKDLSEAQVDALLNSP 126 Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG- 240 + + E L +GLR S+ + + ++ K V L + Sbjct: 127 NVDIPLELRDKAMLEVLYATGLRVSELVGLTISDVSLRQGVVRVIGKGNKERLVPLGEEA 186 Query: 241 ------FMKLLAMTPIGKETF---FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHG 288 +M+ I ++ F +N Q+M F K A AG++ S H Sbjct: 187 VYWIENYMEYGRPWLINGQSLDVLFPSNRSQQMTRQTFWHRIKHYAILAGIDSERLSPHV 246 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRL 331 +R AT + GA + G + + YT A +R++L Sbjct: 247 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLKL 290 >gi|114046522|ref|YP_737072.1| phage integrase family protein [Shewanella sp. MR-7] gi|113887964|gb|ABI42015.1| phage integrase family protein [Shewanella sp. MR-7] Length = 338 Score = 145 bits (366), Expect = 9e-33, Method: Composition-based stats. Identities = 67/334 (20%), Positives = 111/334 (33%), Gaps = 33/334 (9%) Query: 7 LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHES--TFIPAYMSALTGSTPKREYINSP 64 +P V + R GK Y K R I L + AY +A+ S K Sbjct: 11 MPKGVYLHKVR-GKATSYIMKNSKRTITLCSASSTRAEVWTAYEAAIEKSLTK------- 62 Query: 65 RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124 T K + EY+ SA + LA S+ E + G+ + I HIR ++ Sbjct: 63 ----YTFKRMADEYQASATFKELAPRSQRDRERELAMCNKVFGEMEPDTIKPHHIRRYMD 118 Query: 125 SRKHT-PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 R +T + A L++ V+F W + + NP V++ K K+ R T + Sbjct: 119 IRGNTSRTQANHELSACSVVFGWGYERGHCKENPAKGVKKFKNKSR-DRYITDYEFNALL 177 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243 + ++A E R +D + + I+ KTG + Sbjct: 178 ECCE--QRLKIACEISYLCAARQADVLSLKWSQVMDEGIFIQQGKTGKKQIKAWSPRLHE 235 Query: 244 LLAMTPI----GKETFFIN-NDKQKMNATQFSIWFKAKATKAGVNK-------SAHGVRK 291 L+ F IN ++ A ++ K + + H + K Sbjct: 236 LINEAKTLRKGIASVFVINKTGGGRLTADGLRSSWRRAIDKLALQYPDIERTFTFHDI-K 294 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKG 325 + H+ G KTV Q Y + Sbjct: 295 AKGISDFE--GNIHDKQQFSGHKTVGQVNVYDRR 326 >gi|307289082|ref|ZP_07569038.1| tyrosine recombinase XerD [Enterococcus faecalis TX0109] gi|306499791|gb|EFM69152.1| tyrosine recombinase XerD [Enterococcus faecalis TX0109] Length = 296 Score = 145 bits (366), Expect = 1e-32, Method: Composition-based stats. Identities = 45/274 (16%), Positives = 104/274 (37%), Gaps = 27/274 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDY-------RKITTKHIRSGVESRKHTPSSAIQFL 137 L+ N+R S+E + + + R + T+ ++S E ++ + +S I+ + Sbjct: 16 RGLSNNTRRSYERDLKKYVDFLQEQGLHSWDEVDRYMITEFLQSLHEEQQAS-ASVIRMI 74 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPR 193 +S+R ++ ++ NP ++ PK+ + + +++ + G + R Sbjct: 75 SSLRGFHQFLRQERLSEHNPMQHIDSPKKVQKLPSTLSVDEVTRLIETPDTSKPLGMRNR 134 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAM----- 247 E + +GLR S+ + L +I ++T K + L D ++ + Sbjct: 135 AILEVMYATGLRVSELIEIKLGDLHLSIGLLQTIGKGDKERIIPLGDYAIQWIQRYMNEA 194 Query: 248 ------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299 + F+N+ + ++ K +A + K + H +R AT + Sbjct: 195 RPQLIKNHPNETHLFVNHHGEPLSRQGIWKNLKQIVREAQIEKNITPHTLRHSFATHLLE 254 Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 GA + G + + YT + R+ Sbjct: 255 NGADLRIVQELLGHADISTTQIYTH-ITKQRMAD 287 >gi|171320434|ref|ZP_02909468.1| tyrosine recombinase XerD [Burkholderia ambifaria MEX-5] gi|171094319|gb|EDT39392.1| tyrosine recombinase XerD [Burkholderia ambifaria MEX-5] Length = 320 Score = 145 bits (366), Expect = 1e-32, Method: Composition-based stats. Identities = 49/268 (18%), Positives = 91/268 (33%), Gaps = 22/268 (8%) Query: 85 GSLAVNSRISFES---YFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSSAIQFLTSM 140 LA N+ ++ F Q + + D + + +R +S+ + L+ Sbjct: 43 HGLARNTLDAYRRDLVLFSQWLAATHDVPLDSADEAMLIGYIAARSDGKATSSNRRLSVF 102 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLAF 196 R + WAVR+ + + +P L + K+ ++ ++ G+ + R Sbjct: 103 RRYYGWAVREHHASADPTLRITSAKQAARFPSTLSEAQVEALLGAPDIGTPLGLRDRTML 162 Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------ELPDGFMKLLAM 247 E + SGLR S+ + N ++ G+ + + Sbjct: 163 ELMYASGLRVSELVTLKTVEVGLNEGVVRVMGKGSKERLVPFGEVAHGWIERYLRDARPA 222 Query: 248 T--PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGAT 303 + F+ M QF K A +A V + S H +R AT + GA Sbjct: 223 LLGARAADALFVTARGDGMTRQQFWNIIKRHARQADVRAHLSPHTLRHAFATHLLNHGAD 282 Query: 304 AHELMATYGWKTVDQAETYTKGADRIRL 331 + G + + YT A R RL Sbjct: 283 LRVVQLLLGHSDISTTQIYTHVA-RERL 309 >gi|238759282|ref|ZP_04620448.1| Tyrosine recombinase xerD [Yersinia aldovae ATCC 35236] gi|238702443|gb|EEP94994.1| Tyrosine recombinase xerD [Yersinia aldovae ATCC 35236] Length = 299 Score = 145 bits (365), Expect = 1e-32, Method: Composition-based stats. Identities = 50/278 (17%), Positives = 97/278 (34%), Gaps = 26/278 (9%) Query: 74 LISEYRKSAHW--GSLAVNSRISFESYFDQI---IRKSGDFDYRKITT--KHIRSGVESR 126 LI ++ A W +LA N+ S+ + + G R + + + Sbjct: 8 LIEQFL-DALWLERNLAENTLASYRLDLHALTGWLECHGSDLLRAVPQDLQSFLAERIEG 66 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF- 185 + +S+ + L++MR LF++ R++ +P + PK + ++ + + Sbjct: 67 GYKATSSARLLSAMRRLFQYLYREKLREDDPTALLSSPKLPQRLPKDLSEAQVDALLNSP 126 Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGF 241 + + E L +GLR S+ + + ++ K V L + Sbjct: 127 NVDIPLELRDKAMLEVLYATGLRVSELVGLTISDVSLRQGVVRVIGKGNKERLVPLGEEA 186 Query: 242 MKLLAMTPIGKETFFIN----------NDKQKMNATQFSIWFKAKATKAGVN---KSAHG 288 + + + IN N Q+M F K A AG++ S H Sbjct: 187 VYWIENYMEHGRPWLINGQSLDVLFPSNRSQQMTRQTFWHRIKHYAILAGIDSERLSPHV 246 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 +R AT + GA + G + + YT A Sbjct: 247 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA 284 >gi|261417849|ref|YP_003251531.1| site-specific tyrosine recombinase XerD [Geobacillus sp. Y412MC61] gi|297529517|ref|YP_003670792.1| tyrosine recombinase XerD [Geobacillus sp. C56-T3] gi|319767339|ref|YP_004132840.1| tyrosine recombinase XerD [Geobacillus sp. Y412MC52] gi|261374306|gb|ACX77049.1| tyrosine recombinase XerD [Geobacillus sp. Y412MC61] gi|297252769|gb|ADI26215.1| tyrosine recombinase XerD [Geobacillus sp. C56-T3] gi|317112205|gb|ADU94697.1| tyrosine recombinase XerD [Geobacillus sp. Y412MC52] Length = 298 Score = 145 bits (365), Expect = 1e-32, Method: Composition-based stats. Identities = 45/266 (16%), Positives = 102/266 (38%), Gaps = 26/266 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFD-------YRKITTKHIRSGVESRKHTPSSAIQFL 137 +LA N+ +S+E + +R + ++ H + + + + + L Sbjct: 16 RNLAHNTIVSYERDLKKYVRYLRQVEQLQAWGEVERLHILHFLKFLSEQGQSARTIARHL 75 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPR 193 S+R ++ +R++ A +P + +E P+ + + + E+++ + G + + Sbjct: 76 ASIRSFHQFLLREKIAAQDPTVHIETPQFERTLPKVLSVEEVEALLAAPQVSTPFGLRDK 135 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-------------ELPDG 240 E L +G+R S+ + + + + ++ G + L G Sbjct: 136 AMLELLYATGMRVSELVQLNLADVHLTMGFVRCYGKGRKERIVPIGRMAIEALAHYLERG 195 Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISA 298 +L+ E F+N+ Q++ F K A +AG+ K + H +R AT Sbjct: 196 RPQLVNPRRRATEALFLNHYGQRLTRQGFWKILKRLAKEAGIEKELTPHTLRHSFATHLL 255 Query: 299 DAGATAHELMATYGWKTVDQAETYTK 324 + GA + G + + YT Sbjct: 256 ENGADLRAVQELLGHADISTTQMYTH 281 >gi|118594353|ref|ZP_01551700.1| Tyrosine recombinase XerD [Methylophilales bacterium HTCC2181] gi|118440131|gb|EAV46758.1| Tyrosine recombinase XerD [Methylophilales bacterium HTCC2181] Length = 295 Score = 145 bits (365), Expect = 1e-32, Method: Composition-based stats. Identities = 53/272 (19%), Positives = 98/272 (36%), Gaps = 31/272 (11%) Query: 86 SLAVNSRISFESYFDQII--------RKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFL 137 L+ N+ S+ FD II +K D ++ + + S + L Sbjct: 18 GLSKNTLNSYR--FDLIIFDSWLGEQKKIAMMDVSELEIQEFLAFKFP-SSKSRSISRLL 74 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPR 193 ++R F++ +R++ + +P L ++ PK + ++E+++ S G + R Sbjct: 75 ATLRRFFRYQLREKKIQKDPTLKIQTPKIPKSLPKSLSEEEVESLLDAPNLDSSSGLRDR 134 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIG 251 E L GLR ++ + + + + + T K V + + + + Sbjct: 135 SMLELLYACGLRVTELVDIQLTEVILSDGVIRV-TGKGSKTRLVPMGEEAVDWIKKYIAE 193 Query: 252 KET----------FFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299 F+ N M F K A A +NK S H +R AT + Sbjct: 194 ARDDILRKKTSKFLFVTNRGGAMTRQAFWYVIKKYAVIANINKPMSPHILRHAFATHLIN 253 Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRL 331 GA + G + + YT A R RL Sbjct: 254 HGADLRVVQMLLGHTDISTTQIYTHVA-RERL 284 >gi|323493661|ref|ZP_08098782.1| site-specific tyrosine recombinase XerD [Vibrio brasiliensis LMG 20546] gi|323312184|gb|EGA65327.1| site-specific tyrosine recombinase XerD [Vibrio brasiliensis LMG 20546] Length = 302 Score = 145 bits (365), Expect = 1e-32, Method: Composition-based stats. Identities = 44/280 (15%), Positives = 106/280 (37%), Gaps = 26/280 (9%) Query: 72 KWLISEYRKSAHW--GSLAVNSRISFE----SYFDQIIRKSGDFDYRKIT-TKHIRSGVE 124 + ++ ++ S W L+ N+ S+ + + D+ ++ + +S + Sbjct: 9 QGIVEQFLDSM-WMERGLSENTLASYRNDLVKLLQWMTANNYRLDFISLSGLQEYQSWLS 67 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 + +S + L+++R LF++ R++ + +P + PK + T++ ++ + Sbjct: 68 DSGYKQTSRARMLSAIRRLFQYLHREKIRSDDPSALLVSPKLPKRLPKDLTEDQVEALLN 127 Query: 185 FWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPD 239 + + E L +GLR ++ ++++ ++ T K G V + + Sbjct: 128 APDPNDAMELRDKAMLELLYATGLRVTELVSLTMENISLRQGVVRVTGKGGKERLVPMGE 187 Query: 240 GFMKLLAM----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSA 286 ++ + + F + ++M F K A AG++ S Sbjct: 188 NAVEWIETFLQQGRSELLGETTSDVVFPSKRARQMTRQTFWHRIKHYAVLAGIDTELLSP 247 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 H +R AT + GA + G + + YT A Sbjct: 248 HVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVA 287 >gi|318605376|emb|CBY26874.1| hypothetical protein Y11_13071 [Yersinia enterocolitica subsp. palearctica Y11] Length = 332 Score = 145 bits (365), Expect = 1e-32, Method: Composition-based stats. Identities = 51/282 (18%), Positives = 99/282 (35%), Gaps = 21/282 (7%) Query: 59 EYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH 118 E + +K +TL L+ + +S + LA ++ + Y +++ G I +H Sbjct: 45 EKFINEKKDKSTLNTLVESFFRSVDFIDLATETQKDYRKYATKLLPVFGAMHPDNIKPEH 104 Query: 119 IRSGVESRK-HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177 +R ++ R + + A + T M ++W + +V NPC V++ K ++ R T E Sbjct: 105 VRKYMDKRGLSSRTQANREKTFMSRAYRWGYERGFVKGNPCKGVKQFKEESRE-RYITDE 163 Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL 237 + + R A E R +D + + I+ KTG E Sbjct: 164 EYNALYKAAPD--IVRAAMEIAYLCLARQADVLSLRKDQFRESGIYIRQGKTGAKQIKEW 221 Query: 238 PDGFMKLLAMT------PIGKETFFINND-KQKMNATQFSIWFKAKATKAG-------VN 283 + +A+ P + I + F+ ++ A N Sbjct: 222 SERLRDAIALAESLPLQPGISSVYIIRQRTGLRYTRDGFNSRWRKAREAAKEAYPELDFN 281 Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 + H + K + + E A G K + Q Y + Sbjct: 282 FTFHDL-KAKGVSDLE--GSLSEKQAISGHKNMGQTARYDRK 320 >gi|332175380|gb|AEE24634.1| tyrosine recombinase XerD [Glaciecola agarilytica 4H-3-7+YE-5] Length = 301 Score = 145 bits (365), Expect = 1e-32, Method: Composition-based stats. Identities = 52/301 (17%), Positives = 104/301 (34%), Gaps = 35/301 (11%) Query: 73 WLISEYRKSAHW--GSLAVNSRISFESYF----DQIIRKSGDFDYRKITTKHIRSGVESR 126 +I ++ + W L+ N+ ++ S D + ++ I T+ I + R Sbjct: 9 AVIEQFLDTI-WLEKGLSENTLEAYRSDLTKFSDYLNKQLPHTHLLDIQTEDINQYMAHR 67 Query: 127 ---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 T S+ + L+S R + + +P ++ PK + +++ + Sbjct: 68 YDSGLTERSSARCLSSFRRFSGYMLAHGLREDDPVSRMQNPKLSKPLPKTLSEQQVDDLL 127 Query: 184 SF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELP 238 + + + E L +GLR ++ V L + ++ T K V L Sbjct: 128 NAPQTDDPIHLRDKAMLEVLYATGLRVTELVTLRVGQLSVSQGVVRVTGKGNKERLVPLG 187 Query: 239 DGFMKLL---------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAH 287 + + L A+ + F +N M F K A +A + + S H Sbjct: 188 EEALDWLSKYLKEARGALLRNESDVLFPSNRGTIMTRQTFWHRIKFHAAQANITSDLSPH 247 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347 +R AT + GA + G + + YT A + R+ +V + Sbjct: 248 TLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA---------TARLQELVANHH 298 Query: 348 P 348 P Sbjct: 299 P 299 >gi|311693653|gb|ADP96526.1| site-specific tyrosine recombinase XerD [marine bacterium HP15] Length = 300 Score = 145 bits (365), Expect = 1e-32, Method: Composition-based stats. Identities = 50/270 (18%), Positives = 96/270 (35%), Gaps = 25/270 (9%) Query: 86 SLAVNSRISFESYF----DQIIRKSGDFDYRKITTKHIRSGVE---SRKHTPSSAIQFLT 138 L +R ++ S + + + G R + + + + ++ S+A + L+ Sbjct: 21 GLGEKTRQAYRSDLLRLSEWLESQPGKPLLRDVRRTDLLAWMSSGLAQGVKSSTAARRLS 80 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG----SQPRL 194 +R +++ +R+ + +P L ++ P+ T+ ++ S G + + Sbjct: 81 GLRRFYRFLLREGLITEDPTLRIDSPRLPRRLPDSLTEGEVDALLSEPDPGIAIELRDKA 140 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLA------- 246 E L GLR S+ V + ++ T K V L + + L Sbjct: 141 MLEILYGCGLRVSELTELRVDQVNLRQGVVRITGKGDKERLVPLGEEAVDWLLQYMKEGR 200 Query: 247 ---MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAG 301 + + F N M F K A + G+ K S H +R AT + G Sbjct: 201 PELLKGRSCDALFPGNRAAAMTRQTFWHRIKHYAVRVGIRKHLSPHTLRHAFATHLLNHG 260 Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRL 331 A + G + + YT A R RL Sbjct: 261 ADLRVVQMLLGHSDLSTTQIYTHVA-RQRL 289 >gi|86142675|ref|ZP_01061114.1| putative tyrosine recombinase [Leeuwenhoekiella blandensis MED217] gi|85830707|gb|EAQ49165.1| putative tyrosine recombinase [Leeuwenhoekiella blandensis MED217] Length = 298 Score = 145 bits (365), Expect = 1e-32, Method: Composition-based stats. Identities = 52/273 (19%), Positives = 97/273 (35%), Gaps = 25/273 (9%) Query: 85 GSLAVNSRISF----ESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH--TPSSAIQFLT 138 L+ N+ +++ I S + IT + ++ + + T SS + ++ Sbjct: 18 RGLSENTVVNYGLDISKLIKWIDEHSVEASPISITKEQLQDFIYTYAKELTASSQARLIS 77 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRL 194 ++ F++ V ++Y NP +E PK + +++++ + +G + R Sbjct: 78 GLKGYFEYLVFEDYRKDNPTDLIEAPKVGRKLPDTLSEDEVNRIIDAVDLSRPQGERNRA 137 Query: 195 AFEFLLYSGLRCSDSCRAGVQH-LQNNIFSIKTQKTGTIITVELPDGFMKLL-------- 245 E L GLR S+ + + + + T K V + K + Sbjct: 138 ILETLYGCGLRVSEVLNLKLSDLFFDEGYILVTGKGDKQRFVPIAPITQKYIEIYRDQIR 197 Query: 246 ---AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300 A P K F+N ++ K KAG+ K S H R AT Sbjct: 198 IHEAPKPEFKNILFLNRRGAQLTRAMIFTLVKQHTQKAGIKKKISPHTFRHSFATHLLQN 257 Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 GA + G +++ E Y DR L Sbjct: 258 GADLRAIQQMLGHESITTTEVYMH-VDRSHLAD 289 >gi|163814162|ref|ZP_02205554.1| hypothetical protein COPEUT_00316 [Coprococcus eutactus ATCC 27759] gi|158450611|gb|EDP27606.1| hypothetical protein COPEUT_00316 [Coprococcus eutactus ATCC 27759] Length = 292 Score = 145 bits (365), Expect = 1e-32, Method: Composition-based stats. Identities = 39/271 (14%), Positives = 95/271 (35%), Gaps = 21/271 (7%) Query: 73 WLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTK------HIRSGVES 125 I Y + + N+ S+ + + D ++ +E Sbjct: 3 QYIDRYVEYLRNVKKSSENTIASYRRDLMKFVAYFCDKHLDRLEDITETYITSYVLDMEK 62 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK-- 183 + ++ + + S++ + + +R+ V +P +++ PK + T ++ + Sbjct: 63 NGMSMATVSRNIASIKSFYAFLLRERIVDDDPAENIKPPKIVKKVPEILTISEVNKLLSQ 122 Query: 184 --SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241 + + + + E L +G+R ++ + + + I+ + TV + + Sbjct: 123 PTNKTPKEIRDKAMLELLYATGIRVTELVTLKLTDVNMKLGFIECHDGDRVRTVPVAEVA 182 Query: 242 MKLLAMTPI--------GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRK 291 + L+ G + F N M+ F K A KAG++K + H +R Sbjct: 183 QRALSRYITEVRDDMSGGSDYLFFNCKGAPMSRQGFWKIIKYYAAKAGIDKDITPHMIRH 242 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETY 322 A+ + GA + G + + Y Sbjct: 243 SFASHMLNNGADIKSVQEMLGHVDIATTQIY 273 >gi|160934248|ref|ZP_02081635.1| hypothetical protein CLOLEP_03119 [Clostridium leptum DSM 753] gi|156866921|gb|EDO60293.1| hypothetical protein CLOLEP_03119 [Clostridium leptum DSM 753] Length = 309 Score = 145 bits (365), Expect = 1e-32, Method: Composition-based stats. Identities = 41/278 (14%), Positives = 98/278 (35%), Gaps = 26/278 (9%) Query: 76 SEYRKSAHWGSLAVNSRISFESYFDQIIRKSG------DFDYRKITTKHIRSGVESRKHT 129 +Y K+ ++ N+ S+ + +H +E + Sbjct: 19 QDYLKNQ--KCVSSNTLQSYVRDIEHFSIYLAAENIDNPASVTADDLQHYIESLEKLGRS 76 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----QQFKSF 185 S+ + + S+R +++ + + NP ++R K + + T E++ Q Sbjct: 77 ASTVTRNIASIRCFYQYLILINIASENPAKEIKREKTEKKPPSILTGEEIRLLLDQPNVM 136 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245 +G + + E L +G+R S+ +Q + + ++ + + + + L Sbjct: 137 DPKGCRDKAMIELLYATGIRVSELIDLNLQDINLKTGMLHCRRPKSDRIIPIYAEAVASL 196 Query: 246 A----------MTPIGKE--TFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRK 291 + + P+GK+ F+N + ++ F K A +A + K + H +R Sbjct: 197 SDYISRVRRIIIDPVGKDGQALFVNLNGHRLTRQGFWKIIKGYAAQARITKDITPHTLRH 256 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 A GA ++ G + + Y + Sbjct: 257 SFALHLLQNGADLKDIQEMLGHADIASTQVYANLLNNR 294 >gi|319425289|gb|ADV53363.1| tyrosine recombinase XerD [Shewanella putrefaciens 200] Length = 300 Score = 145 bits (365), Expect = 1e-32, Method: Composition-based stats. Identities = 50/288 (17%), Positives = 103/288 (35%), Gaps = 26/288 (9%) Query: 74 LISEYRKSAHW--GSLAVNSRISFE---SYFDQIIRKSGDFDYRKITT--KHIRSGVESR 126 LI + W L+ N+ ++ +FD+ ++ G + + + Sbjct: 10 LIDAFLDDL-WSSKGLSDNTLSAYRTDLRHFDRHQQRHGTTLLEATAADVRSYLALRLEQ 68 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF- 185 +S+ + L+S+R + + + + +A++P +E PK ++ + + + Sbjct: 69 HFARTSSARLLSSLRRFYTYLLLTKQIAVDPMALIESPKLTRHLPHSLSESQVDRLLAEP 128 Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGF 241 + + E L +GLR S+ ++ + ++ K G V L + Sbjct: 129 NVDDPVECRDKAMLELLYATGLRVSELVGLTMEQMSLRQGLVRIVGKGGKERLVPLGELA 188 Query: 242 MKLLAM----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGV 289 + + + F +N Q M F K A +AG+ S H + Sbjct: 189 VTEVEAYLKFARQELLGHKQSDVVFPSNRGQMMTRQTFWHRIKLYALRAGIETALSPHTL 248 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 R AT + GA + G + + YT A R RL + + Sbjct: 249 RHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVA-RARLQELHQQ 295 >gi|226328247|ref|ZP_03803765.1| hypothetical protein PROPEN_02140 [Proteus penneri ATCC 35198] gi|225202980|gb|EEG85334.1| hypothetical protein PROPEN_02140 [Proteus penneri ATCC 35198] Length = 312 Score = 145 bits (365), Expect = 1e-32, Method: Composition-based stats. Identities = 46/265 (17%), Positives = 91/265 (34%), Gaps = 23/265 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGD-----FDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139 L+ N+ S+ + + + + + + SSA + L++ Sbjct: 33 QGLSANTLSSYRLDLQALGQWLAHHQLDWLSVSTLDLQSFLATRLDEGYKASSAARLLST 92 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195 MR LF++ R++ +P + PK + +++ + + + + Sbjct: 93 MRRLFQYLYREKLRLDDPSALLSTPKLPKRLPKDLSEQQVDDLLNAPCIDEPLELRDKAM 152 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVEL-------PDGFMKLLAM 247 E L GLR S+ + + ++ K V L + +++ Sbjct: 153 LEVLYACGLRVSELVGLSLSDISLRQGVLRVIGKGDKERLVPLGEEAIYWLEQYLQYGRP 212 Query: 248 TPIGKET---FFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAG 301 T + +T F + QKM F K A AG++ S H +R AT + G Sbjct: 213 TLMQGKTDDIVFPSLRGQKMTRQTFWHRIKHYAVIAGIDTEKLSPHVLRHAFATHLLNHG 272 Query: 302 ATAHELMATYGWKTVDQAETYTKGA 326 A + G + + YT A Sbjct: 273 ADLRVVQMLLGHSDLSTTQIYTHVA 297 >gi|92115127|ref|YP_575055.1| tyrosine recombinase XerD subunit [Chromohalobacter salexigens DSM 3043] gi|91798217|gb|ABE60356.1| tyrosine recombinase XerD subunit [Chromohalobacter salexigens DSM 3043] Length = 295 Score = 144 bits (364), Expect = 1e-32, Method: Composition-based stats. Identities = 48/274 (17%), Positives = 98/274 (35%), Gaps = 22/274 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFD--YRKITTKHIRSGVESRKHT--PSSAIQFLTSM 140 L+ ++ ++ D + + + + + +R+ P S + L+ + Sbjct: 18 RGLSQHTLAAYRRDLDAWLAHLAARGACLMAPDEQALETFLAARREHYHPRSVARLLSCL 77 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAF 196 R ++WA+ + +V+++P P+ T+ + ++++ + G + R Sbjct: 78 RRFYRWALAEGHVSVDPLADARAPRAVTKLPDTLDEAEVERLLAAPDVELPLGLRDRTML 137 Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAM-------- 247 E L GLR S+ V + ++ K V L + LA Sbjct: 138 EVLYGCGLRVSELVGLTVDAVNLRQGVLRVLGKGDKERLVPLGEEATAWLARYLRQGRGD 197 Query: 248 --TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGAT 303 + F M F K A AG++K S H +R AT + GA Sbjct: 198 LMQDPTRPPLFPGRHDGFMTRQTFWHRIKRHAVSAGIDKPLSPHTLRHAFATHLLNHGAN 257 Query: 304 AHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 + G + + YT+ A + RL +++ Sbjct: 258 LRVVQMLLGHSDLSTTQIYTQVA-QARLEALHAQ 290 >gi|168752738|ref|ZP_02777760.1| site-specific recombinase, phage integrase family [Escherichia coli O157:H7 str. EC4113] gi|168757666|ref|ZP_02782673.1| site-specific recombinase, phage integrase family [Escherichia coli O157:H7 str. EC4401] gi|168770287|ref|ZP_02795294.1| site-specific recombinase, phage integrase family [Escherichia coli O157:H7 str. EC4486] gi|168784061|ref|ZP_02809068.1| site-specific recombinase, phage integrase family [Escherichia coli O157:H7 str. EC4076] gi|195940083|ref|ZP_03085465.1| putative integrase [Escherichia coli O157:H7 str. EC4024] gi|208810674|ref|ZP_03252550.1| site-specific recombinase, phage integrase family [Escherichia coli O157:H7 str. EC4206] gi|208816586|ref|ZP_03257706.1| site-specific recombinase, phage integrase family [Escherichia coli O157:H7 str. EC4045] gi|209399988|ref|YP_002271143.1| site-specific recombinase, phage integrase family [Escherichia coli O157:H7 str. EC4115] gi|254793679|ref|YP_003078516.1| putative integrase for prophage CP-933U [Escherichia coli O157:H7 str. TW14359] gi|188013544|gb|EDU51666.1| site-specific recombinase, phage integrase family [Escherichia coli O157:H7 str. EC4113] gi|188998687|gb|EDU67673.1| site-specific recombinase, phage integrase family [Escherichia coli O157:H7 str. EC4076] gi|189355394|gb|EDU73813.1| site-specific recombinase, phage integrase family [Escherichia coli O157:H7 str. EC4401] gi|189360802|gb|EDU79221.1| site-specific recombinase, phage integrase family [Escherichia coli O157:H7 str. EC4486] gi|208725190|gb|EDZ74897.1| site-specific recombinase, phage integrase family [Escherichia coli O157:H7 str. EC4206] gi|208730929|gb|EDZ79618.1| site-specific recombinase, phage integrase family [Escherichia coli O157:H7 str. EC4045] gi|209161388|gb|ACI38821.1| site-specific recombinase, phage integrase family [Escherichia coli O157:H7 str. EC4115] gi|254593079|gb|ACT72440.1| putative integrase for prophage CP-933U [Escherichia coli O157:H7 str. TW14359] Length = 359 Score = 144 bits (364), Expect = 1e-32, Method: Composition-based stats. Identities = 60/330 (18%), Positives = 107/330 (32%), Gaps = 30/330 (9%) Query: 6 RLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65 +LPP V + Y K R ES + A L K E + R Sbjct: 12 KLPPKVYPNK-------YSVWKPTSR--------ESVTLTAIEDGLAALWKKYEETVNHR 56 Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125 + T L ++ SA++ L+ ++ + + +++ G + +HIR ++ Sbjct: 57 DRAMTFGRLWEKFLASAYYSELSPRTQKDYLQHQKKLLAVFGKVLADSVKPEHIRRYMDK 116 Query: 126 RKH-TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 R + + A +SM ++ W + YV NPC V + K K T ++ Q S Sbjct: 117 RGEQSKTQANHEKSSMSRVYSWGYERGYVKANPCAGVSKFKAKNRERYV-TDKEYQAVLS 175 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244 +A E R SD + + N+ I+ KTG Sbjct: 176 VAPL--PVFIAMEIAYLCAARVSDVLSLKWEQIGNDGIFIQQGKTGKKQIKAWSPRLQAA 233 Query: 245 LAMTP--IGKETFFINNDKQKMNATQFSIWFKAKATKAG------VNKSAHGVRKFSATI 296 + N + F+ + AG + + H + K Sbjct: 234 IEKAKQLPTSAYVISNQYGNRYMYKGFNEMWVEARNHAGKISGILTDFTFHDL-KAKGIS 292 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGA 326 + ++ + G KT Q Y + Sbjct: 293 DYE--GSSRDKQLFSGHKTEGQVLIYDRKV 320 >gi|237711564|ref|ZP_04542045.1| integrase [Bacteroides sp. 9_1_42FAA] gi|237725982|ref|ZP_04556463.1| integrase [Bacteroides sp. D4] gi|265752992|ref|ZP_06088561.1| tyrosine recombinase XerD [Bacteroides sp. 3_1_33FAA] gi|229435790|gb|EEO45867.1| integrase [Bacteroides dorei 5_1_36/D4] gi|229454259|gb|EEO59980.1| integrase [Bacteroides sp. 9_1_42FAA] gi|263236178|gb|EEZ21673.1| tyrosine recombinase XerD [Bacteroides sp. 3_1_33FAA] Length = 308 Score = 144 bits (364), Expect = 1e-32, Method: Composition-based stats. Identities = 53/276 (19%), Positives = 106/276 (38%), Gaps = 23/276 (8%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQII-----RKSGDFDYRKITTKHIRSGVES 125 ++ +YR+ SL+ N+ ++ + D+++ D R + +G+ Sbjct: 8 DKILVKYRQYLKLEKSLSDNTVDAYLTDLDKLLAYLTLENINILDVRLENLEDFSAGLHD 67 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 P S + L+ +R +++ + ++Y+ +P +E P+ + T E++ Sbjct: 68 IGIHPRSQARILSGIRSFYRFLIMEDYLESDPTELLESPQTGFKLPEVMTVEEIDLLIGS 127 Query: 186 WSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT-VELPDG 240 G+ + R E L GLR S+ C + L IK + G+ V + Sbjct: 128 IDRGTKEGQRNRAILETLYSCGLRVSELCNLKLSELYFEEGFIKVEGKGSKQRLVPISPR 187 Query: 241 F----------MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHG 288 L+ + P ++ FI+N + ++ K A + G+ K S H Sbjct: 188 AIKEIRLYFTDRNLMKIKPGFEDFVFISNFGKNISRIMVFHIIKELAERIGLKKKISPHT 247 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 R AT + GA + G +++ E YT Sbjct: 248 FRHSFATHLLEGGANLRAIQCMLGHESIGTTEIYTH 283 >gi|168778124|ref|ZP_02803131.1| site-specific recombinase, phage integrase family [Escherichia coli O157:H7 str. EC4196] gi|187766816|gb|EDU30660.1| site-specific recombinase, phage integrase family [Escherichia coli O157:H7 str. EC4196] Length = 359 Score = 144 bits (364), Expect = 1e-32, Method: Composition-based stats. Identities = 60/330 (18%), Positives = 107/330 (32%), Gaps = 30/330 (9%) Query: 6 RLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65 +LPP V + Y K R ES + A L K E + R Sbjct: 12 KLPPKVYPNK-------YSVWKPTSR--------ESVTLTAIEDGLAALWKKYEETVNHR 56 Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125 + T L ++ SA++ L+ ++ + + +++ G + +HIR ++ Sbjct: 57 DRAMTFGRLWEKFLASAYYSELSPRTQKDYLQHQKKLLAVFGKVLADSVKPEHIRRYMDK 116 Query: 126 RKH-TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 R + + A +SM ++ W + YV NPC V + K K T ++ Q S Sbjct: 117 RGEQSKTQANHEKSSMSRVYSWGYERGYVKANPCAGVSKFKAKNRERYV-TDKEYQAVLS 175 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244 +A E R SD + + N+ I+ KTG Sbjct: 176 VAPL--PVFIAMEIAYLCAARVSDVLSLKWEQIGNDGIFIQQGKTGKKQIKAWSPRLQAA 233 Query: 245 LAMTP--IGKETFFINNDKQKMNATQFSIWFKAKATKAG------VNKSAHGVRKFSATI 296 + N + F+ + AG + + H + K Sbjct: 234 IEKAKQLPTSAYVISNQYGNRYMYKGFNEMWVEARNHAGKMSGILTDFTFHDL-KAKGIS 292 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGA 326 + ++ + G KT Q Y + Sbjct: 293 DYE--GSSRDKQLFSGHKTEGQVLIYDRKV 320 >gi|261868581|ref|YP_003256503.1| site-specific tyrosine recombinase XerD [Aggregatibacter actinomycetemcomitans D11S-1] gi|261413913|gb|ACX83284.1| tyrosine recombinase XerD [Aggregatibacter actinomycetemcomitans D11S-1] Length = 297 Score = 144 bits (364), Expect = 1e-32, Method: Composition-based stats. Identities = 40/268 (14%), Positives = 87/268 (32%), Gaps = 23/268 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYR-----KITTKHIRSGVESRKHTPSSAIQFLTS 139 L+ N+ S+ + + + + + +S + L++ Sbjct: 18 KGLSPNTVESYRLDLTALCDWLEARHLSLLGLDAVDLQAFLGERVEQGYKATSTARLLSA 77 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRLA 195 MR LF++ +++Y +P + PK + + T++ + + + + Sbjct: 78 MRKLFQYLYQEKYRTDDPSAVLSSPKLPSRLPKYLTEQQVTDLLNVQSLEQPIELRDKAM 137 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLA-----MTP 249 E L +GLR ++ + N ++ K V + + + P Sbjct: 138 LELLYATGLRVTELVSLNTDSINLNQGVVRVIGKGKKERIVPMGEEATHWVKQFMLFARP 197 Query: 250 I-----GKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAG 301 + + F + +M F K A A ++ S H +R AT + G Sbjct: 198 MLLDGQSSDVLFPSRRGTQMTRQTFWHRIKHYAVLAEIDSEMLSPHVLRHAFATHLVNHG 257 Query: 302 ATAHELMATYGWKTVDQAETYTKGADRI 329 A + G + + YT A Sbjct: 258 ADLRVVQMLLGHSDLSTTQIYTHVAKER 285 >gi|259909555|ref|YP_002649911.1| Tyrosine recombinase [Erwinia pyrifoliae Ep1/96] gi|224965177|emb|CAX56709.1| Tyrosine recombinase [Erwinia pyrifoliae Ep1/96] Length = 309 Score = 144 bits (364), Expect = 1e-32, Method: Composition-based stats. Identities = 47/284 (16%), Positives = 100/284 (35%), Gaps = 27/284 (9%) Query: 73 WLISEYRKSAHW--GSLAVNSRISFESYFDQIIRKSGD-----FDYRKITTKHIRSGVES 125 LI ++ A W +LA N+ S+ + + + + Sbjct: 17 DLIEQFL-DALWIERNLAQNTVDSYRLDLRSLGDWLAHQQLSLLNVEVFNLQEFLAQRLE 75 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + +S+ + L++MR LF++ R++ +P + PK + ++ +++ Sbjct: 76 GGYKATSSARLLSAMRRLFQYLYREKLREDDPSALLSSPKLPQRLPKDLSEAQVERLLQA 135 Query: 186 ----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG 240 + + E L +GLR ++ + + ++ K V + + Sbjct: 136 PCLEQPIELRDKAMLELLYATGLRVTELVGLTLSDISLRQGVVRVIGKGNKERLVPMGEE 195 Query: 241 FMKLLAMTPIGKETFFIN----------NDKQKMNATQFSIWFKAKATKAGVN---KSAH 287 + + + +N N ++M F K AT AG++ S H Sbjct: 196 AVHWIEQYIEYGRPWLLNGQTIDVLFPSNRAKQMTRQTFWHRIKHYATLAGIDSDKLSPH 255 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIR 330 +R AT + GA + G + + YT A +R+R Sbjct: 256 VLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLR 299 >gi|310766537|gb|ADP11487.1| Tyrosine recombinase xerD [Erwinia sp. Ejp617] Length = 297 Score = 144 bits (364), Expect = 1e-32, Method: Composition-based stats. Identities = 47/284 (16%), Positives = 100/284 (35%), Gaps = 27/284 (9%) Query: 73 WLISEYRKSAHW--GSLAVNSRISFESYFDQIIRKSGD-----FDYRKITTKHIRSGVES 125 LI ++ A W +LA N+ S+ + + + + Sbjct: 5 DLIEQFL-DALWIERNLAQNTVDSYRLDLRSLGDWLAHQQLSLLNVEVFNLQEFLAQRLE 63 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + +S+ + L++MR LF++ R++ +P + PK + ++ +++ Sbjct: 64 GGYKATSSARLLSAMRRLFQYLYREKLREDDPSALLSSPKLPQRLPKDLSEAQVERLLQA 123 Query: 186 ----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG 240 + + E L +GLR ++ + + ++ K V + + Sbjct: 124 PCLEQPIELRDKAMLELLYATGLRVTELVGLTLSDISLRQGVVRVIGKGNKERLVPMGEE 183 Query: 241 FMKLLAMTPIGKETFFIN----------NDKQKMNATQFSIWFKAKATKAGVN---KSAH 287 + + + +N N ++M F K AT AG++ S H Sbjct: 184 AVHWIEQYIEYGRPWLLNGQTIDVLFPSNRAKQMTRQTFWHRIKHYATLAGIDSDKLSPH 243 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIR 330 +R AT + GA + G + + YT A +R+R Sbjct: 244 VLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLR 287 >gi|315640591|ref|ZP_07895697.1| integrase/recombinase XerD [Enterococcus italicus DSM 15952] gi|315483619|gb|EFU74109.1| integrase/recombinase XerD [Enterococcus italicus DSM 15952] Length = 296 Score = 144 bits (364), Expect = 1e-32, Method: Composition-based stats. Identities = 45/264 (17%), Positives = 103/264 (39%), Gaps = 24/264 (9%) Query: 85 GSLAVNSRISFESYFDQ---IIRKSGDFDYRKITTKHIRSGVESRKH---TPSSAIQFLT 138 L++N+R S+E Q ++ +++I I + +E K + ++ + ++ Sbjct: 16 RGLSLNTRSSYERDLKQYYTFVQTKQITSWQQIDRYTILAFLEQLKKENKSTATITRMIS 75 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRL 194 S+R ++ ++ + +P ++ PK+ + + +++++ G + R Sbjct: 76 SLRRFHQFLRQERHTDHDPMQHIDTPKKVQKLPDTLSLKEVERLIDTPDTRKILGIRDRA 135 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPD-----------GFM 242 E + +GLR S+ + + + N+ ++T K V L D Sbjct: 136 ILEVMYATGLRVSELIQLQLSDIHLNMALLQTIGKGDKERIVPLGDMAIHWLEVYLSDAR 195 Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADA 300 +L + F+N+ +K+ K AG++K+ H +R AT + Sbjct: 196 PILVSKQPNETALFVNSHGKKLTRQGIWKNLKEIVRAAGIHKTVTPHTLRHSFATHLLEN 255 Query: 301 GATAHELMATYGWKTVDQAETYTK 324 GA + G + + YT Sbjct: 256 GADLRTVQELLGHADISTTQIYTH 279 >gi|253997434|ref|YP_003049498.1| tyrosine recombinase XerD [Methylotenera mobilis JLW8] gi|253984113|gb|ACT48971.1| tyrosine recombinase XerD [Methylotenera mobilis JLW8] Length = 302 Score = 144 bits (364), Expect = 1e-32, Method: Composition-based stats. Identities = 56/283 (19%), Positives = 102/283 (36%), Gaps = 25/283 (8%) Query: 72 KWLISEYRKSAHWGS--LAVNSRISFESYFDQII--RKSGDFDYRKITTKHIRSGVESR- 126 I + A W L+ N+ S+ S I ++ + + Sbjct: 11 AAAIDSFL-DAIWLEDGLSKNTLDSYRLDLTAFAIWASSQHKQLLTIDKADVQQYLAVKF 69 Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 P S + + S+R +++ +R+ +AI+P L +E PK + +E++ + Sbjct: 70 PLSKPRSIGRLIASLRRFYRYNLRENLIAIDPTLQIESPKLPRSLPKSLNEEEVMALLNA 129 Query: 186 WSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT-VELPDG 240 + G + + E L SGLR S+ + + ++ G+ V + + Sbjct: 130 PNVDDVVGLRDKAMLELLYASGLRVSELVSIKTSEVSMSDSVVRVTGKGSKTRLVPMGEN 189 Query: 241 FMKLL-----AMTP-----IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHG 288 ++ + A P + F+ N M F K A AG+ K S H Sbjct: 190 AVEWISHYLKAARPQILQNRLSDALFVTNRGDAMTRQTFWHMIKRYALLAGITKHMSPHV 249 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 +R AT + GA + G + + YT A R RL Sbjct: 250 LRHAFATHLLNHGADLRVVQMLLGHSDISTTQIYTYVA-RERL 291 >gi|224025282|ref|ZP_03643648.1| hypothetical protein BACCOPRO_02021 [Bacteroides coprophilus DSM 18228] gi|224018518|gb|EEF76516.1| hypothetical protein BACCOPRO_02021 [Bacteroides coprophilus DSM 18228] Length = 314 Score = 144 bits (364), Expect = 1e-32, Method: Composition-based stats. Identities = 56/286 (19%), Positives = 109/286 (38%), Gaps = 24/286 (8%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GD--FDYRKITTKHIRSGVES 125 +I++Y++ S + N+ ++ + D+++ G + + +G+ Sbjct: 8 GKIITKYKQYLKLEKSFSSNTIDAYLTDLDKLMAYLTLEGKDCLEVTLDDLETFSAGLHD 67 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 S + L+ +R +++ + ++Y+ +PC +E P+ T E++ + Sbjct: 68 IGINARSQARILSGVRAFYRFLLLEDYIQQDPCELLESPQTGRHLPDVLTVEEIDRLIGS 127 Query: 186 WS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT-VELPDG 240 EG + R E L GLR S+ C + L N IK + G+ V + Sbjct: 128 IDRSSREGQRNRAILETLYSCGLRVSELCNLKLSDLYLNEGFIKVEGKGSKQRLVPISPK 187 Query: 241 F----------MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHG 288 + P ++ FI+ + ++ K A AG+ K S H Sbjct: 188 AISELNNYFPNRNAGLIKPGYEDFVFISRFGKNISRIMVFHIIKELAGMAGIKKTISPHT 247 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIK 334 R AT + GA + G +++ E YT DR RL + Sbjct: 248 FRHSFATHLLEGGANLRAIQCMLGHESIGTTEIYTH-IDRNRLRQE 292 >gi|126173088|ref|YP_001049237.1| tyrosine recombinase XerD [Shewanella baltica OS155] gi|125996293|gb|ABN60368.1| tyrosine recombinase XerD [Shewanella baltica OS155] Length = 309 Score = 144 bits (364), Expect = 2e-32, Method: Composition-based stats. Identities = 50/275 (18%), Positives = 98/275 (35%), Gaps = 23/275 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKI-----TTKHIRSGVESRKHTPSSAIQFLTS 139 L+ N+ ++ + R G + + + + +S+ + L+S Sbjct: 31 KGLSDNTLSAYRTDLRHFDRYQGQQGVTLLAVSQADVRAYLAFRVEQDFARTSSARLLSS 90 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195 +R + + V+ + + +P VE PK ++ + + S + + + Sbjct: 91 LRRFYTYLVQTKQILADPMALVESPKLTRHLPDSLSESQVDRLLSEPNVEDAVECRDKAM 150 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPD-------GFMKLLAM 247 E L +GLR S+ ++ + ++ K G V L + +MK Sbjct: 151 LELLYATGLRVSELVGLTMEQMSLRQGLVRIVGKGGKERLVPLGELAITEVESYMKFARQ 210 Query: 248 TPIGK---ETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGA 302 +G + F + Q M F K A +AG+ S H +R AT + GA Sbjct: 211 ELLGNKQSDVVFPSKRGQMMTRQTFWHRIKLYALRAGIETALSPHTLRHAFATHLLNHGA 270 Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 + G + + YT A R RL + + Sbjct: 271 DLRVVQLLLGHSDLSTTQIYTHVA-RARLQELHQQ 304 >gi|152981084|ref|YP_001352164.1| integrase/recombinase [Janthinobacterium sp. Marseille] gi|151281161|gb|ABR89571.1| integrase/recombinase [Janthinobacterium sp. Marseille] Length = 301 Score = 144 bits (364), Expect = 2e-32, Method: Composition-based stats. Identities = 46/268 (17%), Positives = 87/268 (32%), Gaps = 23/268 (8%) Query: 86 SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS-----GVESRKHTPSSAIQFLTSM 140 LA NS ++ + + H + +S+ + L + Sbjct: 24 GLAKNSLEAYRRDLRLFATWLQQERGKSLLAAHTEDLNGYFFAKHATTKATSSNRRLAVL 83 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAF 196 + ++ A+RQ + +PCL + K+ + ++ ++ + G + R Sbjct: 84 KRFYQLALRQNKIKDDPCLRLRSAKQPPRMPKTLSEAQVEALLAAPDVNTPLGLRDRTML 143 Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLAMTPIG---- 251 E + SGLR ++ + N ++ T K G + + + Sbjct: 144 ELMYASGLRVTELVLLKSVEVGMNEGVLRVTGKGGKTRLIPFGEEARAWIERYLKEARGA 203 Query: 252 ------KETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGAT 303 + F+ M F K A A +N S H +R AT + GA Sbjct: 204 ILNGQMDDALFVTARGGAMTRQMFWTLIKKHAAAADINAPLSPHTLRHAFATHLLNHGAD 263 Query: 304 AHELMATYGWKTVDQAETYTKGADRIRL 331 + G + + YT A R RL Sbjct: 264 LRVVQLLLGHSDISTTQIYTHVA-RERL 290 >gi|308274298|emb|CBX30897.1| Tyrosine recombinase xerD [uncultured Desulfobacterium sp.] Length = 298 Score = 144 bits (364), Expect = 2e-32, Method: Composition-based stats. Identities = 42/280 (15%), Positives = 91/280 (32%), Gaps = 24/280 (8%) Query: 71 LKWLISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI------RSGV 123 + L+ +Y L+ + S+ S I G + I+ + Sbjct: 4 IDSLVDQYLNYLVVEKGLSKKTLESYGSDIATYIDFLGKKGIKDISEADTPTILMHIIAL 63 Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 S + L ++R +K+ VR++ + +P ++ PK T+++++ Sbjct: 64 REDGLKARSRARHLVTLRGFYKFLVREKLITTDPTRVIDLPKSGFYLPNVLTQDEVKSLL 123 Query: 184 SFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELP 238 S G + E L +GLR S+ + + + ++ K V + Sbjct: 124 SVPDVSKPAGLRDSAMIELLYAAGLRVSELVGLKLFDVNMDACFVRVFGKGSKERIVPIG 183 Query: 239 DGFMKLLAMTPIGKETFFINND----------KQKMNATQFSIWFKAKATKAGVNKS--A 286 + ++ + N+ + + F K +T + K+ Sbjct: 184 TFAKEKVSEYINTARPLILKNNMSNFLFVGRGGKPLTRQGFWKIIKRYSTLGKITKTITP 243 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 H +R AT + GA + G + + YT Sbjct: 244 HSLRHSFATHLLEGGADLRSVQLMLGHVDISTTQIYTHVV 283 >gi|312900737|ref|ZP_07760034.1| tyrosine recombinase XerD [Enterococcus faecalis TX0470] gi|295112966|emb|CBL31603.1| tyrosine recombinase XerD subunit [Enterococcus sp. 7L76] gi|311292218|gb|EFQ70774.1| tyrosine recombinase XerD [Enterococcus faecalis TX0470] gi|315169704|gb|EFU13721.1| tyrosine recombinase XerD [Enterococcus faecalis TX1342] Length = 296 Score = 144 bits (364), Expect = 2e-32, Method: Composition-based stats. Identities = 47/274 (17%), Positives = 108/274 (39%), Gaps = 27/274 (9%) Query: 85 GSLAVNSRISFESYFDQ---IIRKSG----DFDYRKITTKHIRSGVESRKHTPSSAIQFL 137 L+ N+R S+E + +++ G D R + T+ ++S E ++ + +S I+ + Sbjct: 16 RGLSNNTRRSYERDLKKYVAFLQEQGLHSWDEVDRYMITEFLQSLHEEQQAS-ASVIRMI 74 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQFKSFWSEGSQPR 193 +S+R ++ ++ NP ++ PK+ + + ++ ++ + G + R Sbjct: 75 SSLRGFHQFLRQERLSEHNPMQHIDSPKKVQKLPSTLSVDEVTRLIEAPDTSKPLGMRNR 134 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAM----- 247 E + +GLR S+ + L +I ++T K + L D ++ + Sbjct: 135 AILEVMYATGLRVSELIEIKLGDLHLSIGLLQTIGKGDKERIIPLGDYAIQWIERYMNEA 194 Query: 248 ------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299 + F+N+ + ++ K +A + K + H +R AT + Sbjct: 195 RPQLIKNHPNETHLFVNHHGEPLSRQGIWKNLKQIVREAQIEKNITPHTLRHSFATHLLE 254 Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 GA + G + + YT + R+ Sbjct: 255 NGADLRIVQELLGHADISTTQIYTH-ITKQRMAD 287 >gi|23505472|ref|NP_700401.1| Integrase protein [Salmonella phage ST64B] gi|167995270|ref|ZP_02576360.1| integrase protein [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|207857414|ref|YP_002244065.1| phage integrase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|23379219|gb|AAL25906.1| Sb28 [Salmonella phage ST64B] gi|205327035|gb|EDZ13799.1| integrase protein [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|206709217|emb|CAR33550.1| phage integrase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|261247218|emb|CBG25042.1| phage integrase [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267994049|gb|ACY88934.1| integrase protein [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301158562|emb|CBW18073.1| bacteriophage integrase [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|323130323|gb|ADX17753.1| Integrase protein [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|326623804|gb|EGE30149.1| Integrase protein [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 329 Score = 144 bits (364), Expect = 2e-32, Method: Composition-based stats. Identities = 63/325 (19%), Positives = 117/325 (36%), Gaps = 36/325 (11%) Query: 24 YFRKGHGRRIRLPYPHES--TFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKS 81 Y+ K G + + AY + G RK T L ++ S Sbjct: 23 YYWKPGGSTENIAPADATKAEVWVAYEKKVEG-----------RKNRITFTQLWRKFLAS 71 Query: 82 AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS-SAIQFLTSM 140 A + LA ++ + ++ I+ GD + + I +HIR +++R A +SM Sbjct: 72 ADYADLAPRTQKDYLAHEKYILAVFGDAEAKAIKPEHIRRYMDARGQKSRVQANHEHSSM 131 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP-RLAFEFL 199 +F+W+ ++ YV NPC+ V++ K + R T E+ +++ ++ + R A E Sbjct: 132 SRVFRWSYQRGYVPGNPCVGVDKFP-KPQRDRYITDEE---YRAIYNNATPAVRAAMEIA 187 Query: 200 LYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL--LAMTPIGKETFFI 257 R SD + + I+ KTG D + + Sbjct: 188 YLCAARVSDVLKMNWNQILEKGIFIQQGKTGVKQIKSWTDRLRDAVEICREWGEEGPVIR 247 Query: 258 NNDKQKMNATQFSIWFKAKATKAG------VNKSAHGVRKFSATISADAGATAHELMATY 311 ++ + F+ ++ AG ++ + H + K + TA + Sbjct: 248 TMYGERYSYKGFNEAWRKARKAAGDDLGRPLDCTFHDL-KAKGISDYE--GTAKDKQKYS 304 Query: 312 GWKTVDQAETYTKGA------DRIR 330 G KT Q Y + DR R Sbjct: 305 GHKTESQVLVYDRKVKMSPTLDRKR 329 >gi|149377067|ref|ZP_01894817.1| integrase/recombinase XerD [Marinobacter algicola DG893] gi|149358603|gb|EDM47075.1| integrase/recombinase XerD [Marinobacter algicola DG893] Length = 310 Score = 144 bits (364), Expect = 2e-32, Method: Composition-based stats. Identities = 51/270 (18%), Positives = 96/270 (35%), Gaps = 25/270 (9%) Query: 86 SLAVNSRISFESYFDQII----RKSGDFDYRKITTKHIRSGVES---RKHTPSSAIQFLT 138 L +R ++ S +++ + G ++ + S + S+A + L+ Sbjct: 31 GLGEKTRQAYRSDLERLAAWLQEQPGKPLLTEVRRTDLLSWISRGLSDGFKTSTAARRLS 90 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRL 194 +R F++ +R+ +A +P L ++ P+ +++D++ S + + Sbjct: 91 GLRRFFRYLLREGVIAEDPTLRIDSPRLPRRLPDSLSEDDVENLLSEPDPEVPIELRDKA 150 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLAM------ 247 E L GLR S+ V + ++ K V L + + L Sbjct: 151 MMEILYGCGLRVSELVALTVDEVNLRQGVVRIVGKGNKERLVPLGEEAVDWLVRYMREGR 210 Query: 248 ----TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAG 301 F N M F K A +AG++K S H +R AT + G Sbjct: 211 GELLKGRASNALFPGNRPTAMTRQTFWHRIKHYALRAGIHKHLSPHTLRHAFATHLLNHG 270 Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRL 331 A + G + + YT A R RL Sbjct: 271 ADLRVVQMLLGHSDLSTTQIYTHVA-RQRL 299 >gi|294501141|ref|YP_003564841.1| tyrosine recombinase XerD [Bacillus megaterium QM B1551] gi|294351078|gb|ADE71407.1| tyrosine recombinase XerD [Bacillus megaterium QM B1551] Length = 297 Score = 144 bits (364), Expect = 2e-32, Method: Composition-based stats. Identities = 39/272 (14%), Positives = 99/272 (36%), Gaps = 26/272 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFD-------YRKITTKHIRSGVESRKHTPSSAIQFL 137 LA N+ S+E + + + ++ + + ++ + + + + Sbjct: 16 RGLAKNTIDSYERDLKKYAQYLEHVEQLKSFNEVTRLHIVNFLKYLSDQQKSSKTIARHV 75 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ----FKSFWSEGSQPR 193 S R ++ +R++ +P + ++ P+ + + + E+++ F + G + + Sbjct: 76 ASTRSFHQFLLREKAADTDPSVHIDTPQLERKLPKVLNAEEVEALLNVFDTSTPFGIRDK 135 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------ELPDGFMK- 243 E L +G+R S+ + + I+ G + + + Sbjct: 136 AMLELLYATGIRVSELVNLNIDDAHLTMGFIRCIGKGNKERIVPIGRLATEAIEEYLQHS 195 Query: 244 --LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299 +L + F+N+ +++ F K A++A + K + H +R AT + Sbjct: 196 RSVLTKQKEQDKALFVNHHGRRLTRQGFWKILKKLASEAKIEKELTPHTLRHSFATHLLE 255 Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRL 331 GA + G + + YT + RL Sbjct: 256 NGADLRAVQEMLGHADISTTQIYTH-VTKARL 286 >gi|170760942|ref|YP_001787191.1| tyrosine recombinase XerD [Clostridium botulinum A3 str. Loch Maree] gi|169407931|gb|ACA56342.1| tyrosine recombinase XerD [Clostridium botulinum A3 str. Loch Maree] Length = 291 Score = 144 bits (364), Expect = 2e-32, Method: Composition-based stats. Identities = 42/282 (14%), Positives = 106/282 (37%), Gaps = 21/282 (7%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD-----FDYRKITTKHIRSGVESR 126 K +I Y K +L+ N+ ++ ++ + +T ++ Sbjct: 2 KNIIENYIKDLQKKNLSKNTLEAYRRDVEKFSEFVRNREEKMLSVDTVTIMAFVQYLQRE 61 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 SS ++ + S+R +K+ +++ ++ +P L E PK + + + E++ + + Sbjct: 62 GRATSSIVRNIVSIRNFYKYLIKKNMISEDPTLGYEIPKIERTIPKILSVEEVDKLLNSP 121 Query: 187 S---EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG--- 240 +G + + E + +G++ ++ + + IK + + + +P G Sbjct: 122 DSSKKGLRDKAMLELMYATGVKITELLNLNIYDINLKFNYIKCRGSKKRERI-IPIGSYA 180 Query: 241 ---FMKLLAMTPIGK----ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRK 291 L + P + F+N +M F K A +A ++K ++ +R Sbjct: 181 IKCLKNYLEVRPAINVYNLDYLFLNLKGTQMTRQGFWKIIKFYAKEASIDKEIDSYTLRH 240 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 A GA + G K + + Y+ + + ++ Sbjct: 241 SFAVHLLQNGADIKSVQELLGHKDLAATQIYSSISKKSKIAE 282 >gi|154498071|ref|ZP_02036449.1| hypothetical protein BACCAP_02052 [Bacteroides capillosus ATCC 29799] gi|150273061|gb|EDN00218.1| hypothetical protein BACCAP_02052 [Bacteroides capillosus ATCC 29799] Length = 298 Score = 144 bits (364), Expect = 2e-32, Method: Composition-based stats. Identities = 41/266 (15%), Positives = 95/266 (35%), Gaps = 24/266 (9%) Query: 88 AVNSRISFESYFDQIIRKSGDFDYRKITTK--------HIRSGVESRKHTPSSAIQFLTS 139 S + SY I + +G + +T + + + + ++ + L S Sbjct: 21 KKASLNTLSSYLRDIHQYAGWLEGESLTAEQANQADVERYVKHLSGKGKSVATVTRSLAS 80 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRLA 195 M+ + + + V INP + K + + + T +++ F G + + Sbjct: 81 MKSFYNFLIGAGVVTINPVRGITPAKVERKLPQILTSKEVDLFLEQPDPSDAKGCRDKAM 140 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM-------- 247 E L +G+R S+ ++H+ + ++ + L ++ L Sbjct: 141 LELLYATGIRVSELIGLNLEHVNLSAGFVRCVGRSKERIIPLYPAAVRALTAYMTQVRPQ 200 Query: 248 --TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGAT 303 ++ F+N + ++M+ F K KAG+ K + H +R A + GA Sbjct: 201 MIEHPDEKALFVNMNGERMSRQGFWKIIKHYQEKAGIRKDITPHTLRHSFAAHLLENGAD 260 Query: 304 AHELMATYGWKTVDQAETYTKGADRI 329 + G + + Y + ++ Sbjct: 261 LRSIQEMLGHADISSTQIYAQLVNQK 286 >gi|325983273|ref|YP_004295675.1| tyrosine recombinase XerD [Nitrosomonas sp. AL212] gi|325532792|gb|ADZ27513.1| tyrosine recombinase XerD [Nitrosomonas sp. AL212] Length = 303 Score = 144 bits (364), Expect = 2e-32, Method: Composition-based stats. Identities = 54/277 (19%), Positives = 105/277 (37%), Gaps = 26/277 (9%) Query: 86 SLAVNSRISFESYFDQI-----IRKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFL 137 L+ N+ S+ + R + + T + + SR K S+ + L Sbjct: 23 GLSRNTLDSYRNDLQLFSEWLKRRNPSNSMLTEATNSDLLEFLASRVAAKMKASTTSREL 82 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPR 193 +S++ +++ +RQ +AI+P L++E PK + ++++++ S G + R Sbjct: 83 SSLKRFYRFLLRQGKIAIDPSLNIETPKLQRHLPESLSEKEVELLLSAPDLAQPLGLRDR 142 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-ELPDGFMKLLAMTPIGK 252 E L SGLR S+ + ++ ++ G + + + ++ L Sbjct: 143 AMLEALYASGLRVSELINLKYSQVSMDMGVLRVMGKGRKERLAPVGEESLQWLNRYTKEA 202 Query: 253 ----------ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300 +T F+ M F K A G+ K S H +R AT + Sbjct: 203 RPLLLNGIVTDTIFVTTRGAAMTRQAFWYLIKRYAQLVGIAKQLSPHTLRHAFATHLLNH 262 Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 GA + G + + YT A R RL +++ Sbjct: 263 GADLRVVQLLLGHADISTTQIYTHIA-RERLKQLHAK 298 >gi|91776681|ref|YP_546437.1| tyrosine recombinase XerD [Methylobacillus flagellatus KT] gi|91710668|gb|ABE50596.1| Tyrosine recombinase XerD [Methylobacillus flagellatus KT] Length = 277 Score = 144 bits (363), Expect = 2e-32, Method: Composition-based stats. Identities = 53/268 (19%), Positives = 97/268 (36%), Gaps = 25/268 (9%) Query: 87 LAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS-----GVESRKHTPSSAIQFLTSMR 141 +A N+ S+ R + + P S + + S+R Sbjct: 1 MAKNTLTSYRQDLAAFAAWLQQTRRRAMLEAGPEDIQGFIAFRFPQSQPRSISRLVASLR 60 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRLAFE 197 +++A+R+ Y++ +P + +E PK + +++++++ + G + R E Sbjct: 61 RFYRFALRESYISADPSIHIESPKLPRSLPKSLSEDEVERLINAPDTNTNLGLRDRAMLE 120 Query: 198 FLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAM-------- 247 L +GLR S+ V L + + I T K V L + ++ LA Sbjct: 121 TLYATGLRVSELVGMHVTELSLTDGVVRI-TGKGSKTRLVPLGEQAVEWLARYLQEGRPS 179 Query: 248 --TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGAT 303 + F+ + M F K A AG+ S H +R AT + GA Sbjct: 180 ILQQRLSDHLFVTQRGEGMTRQAFWYLIKRYAAIAGIQASLSPHVLRHAFATHLLNHGAD 239 Query: 304 AHELMATYGWKTVDQAETYTKGADRIRL 331 + G + + YT A R RL Sbjct: 240 LRVVQMLLGHADISTTQIYTHVA-RERL 266 >gi|212638838|ref|YP_002315358.1| site-specific tyrosine recombinase XerD [Anoxybacillus flavithermus WK1] gi|212560318|gb|ACJ33373.1| Site-specific recombinase XerD [Anoxybacillus flavithermus WK1] Length = 300 Score = 144 bits (363), Expect = 2e-32, Method: Composition-based stats. Identities = 40/266 (15%), Positives = 98/266 (36%), Gaps = 26/266 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDF-------DYRKITTKHIRSGVESRKHTPSSAIQFL 137 +LA N+ +S+E + ++ D + ++ + +P + + L Sbjct: 18 RNLAHNTIVSYERDLKKYVQYLQKVEQLCHWNDVTRFHIMQFLKFLKEKGSSPKTIARHL 77 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPR 193 S+R ++ +R++ V +P + +E P+ + + +++ + + + + Sbjct: 78 ASVRSFHQFLLREKAVDQDPTVHIETPQLPRKLPNVLSMAEVEALLEAPKQNTPFSIRDK 137 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-------------ELPDG 240 E L +G+R S+ + + + + I+ G + + G Sbjct: 138 AMLELLYATGIRVSELIQLNISDVHLTMGFIRCYGKGRKERIVPIGKMATEALKRYIEQG 197 Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISA 298 +LL + F+N+ +++ K A +A + K + H +R AT Sbjct: 198 RPELLQRKKGTTDALFLNHHGERLTRQGCWKILKRLAQEANIQKQLTPHTLRHSFATHLL 257 Query: 299 DAGATAHELMATYGWKTVDQAETYTK 324 + GA + G + + YT Sbjct: 258 ENGADLRAVQEMLGHADISTTQIYTH 283 >gi|322831506|ref|YP_004211533.1| tyrosine recombinase XerD [Rahnella sp. Y9602] gi|321166707|gb|ADW72406.1| tyrosine recombinase XerD [Rahnella sp. Y9602] Length = 319 Score = 144 bits (363), Expect = 2e-32, Method: Composition-based stats. Identities = 47/271 (17%), Positives = 99/271 (36%), Gaps = 24/271 (8%) Query: 85 GSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFLTS 139 +LA N+ S+ ++ + D ++ + ++ + R + +S+ + L++ Sbjct: 40 RNLAENTLSSYRQDLKSLLGWLHHNNTDLLHVSAEDLQLFLSERIEGGYKATSSARLLSA 99 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRLA 195 MR LF++ R+ +P + PK + ++ + + + + Sbjct: 100 MRRLFQYMNRESVRQDDPTALLSSPKLPQRLPKDLSEAQVDALLASPSVDVPLELRDKAM 159 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGKET 254 E L +GLR S+ + L ++ K V + + + + Sbjct: 160 LELLYATGLRVSELVGLTLSDLSLRQGVVRVIGKGNKERLVPMGEEAVYWIENYFEHGRP 219 Query: 255 FFIN----------NDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKFSATISADAG 301 + +N N Q+M F K A AG++ S H +R AT + G Sbjct: 220 WLLNGQSLDVVFPSNRAQQMTRQTFWHRIKHYAILAGIDAERLSPHVLRHAFATHLLNHG 279 Query: 302 ATAHELMATYGWKTVDQAETYTKGA-DRIRL 331 A + G + + YT A +R++L Sbjct: 280 ADLRVVQMLLGHSDLSTTQIYTHVATERLKL 310 >gi|237717200|ref|ZP_04547681.1| integrase [Bacteroides sp. D1] gi|262405968|ref|ZP_06082518.1| tyrosine recombinase XerD [Bacteroides sp. 2_1_22] gi|294647940|ref|ZP_06725492.1| tyrosine recombinase XerD [Bacteroides ovatus SD CC 2a] gi|294806338|ref|ZP_06765185.1| tyrosine recombinase XerD [Bacteroides xylanisolvens SD CC 1b] gi|298479972|ref|ZP_06998171.1| tyrosine recombinase XerD [Bacteroides sp. D22] gi|229443183|gb|EEO48974.1| integrase [Bacteroides sp. D1] gi|262356843|gb|EEZ05933.1| tyrosine recombinase XerD [Bacteroides sp. 2_1_22] gi|292636848|gb|EFF55314.1| tyrosine recombinase XerD [Bacteroides ovatus SD CC 2a] gi|294446594|gb|EFG15214.1| tyrosine recombinase XerD [Bacteroides xylanisolvens SD CC 1b] gi|295085584|emb|CBK67107.1| tyrosine recombinase XerD subunit [Bacteroides xylanisolvens XB1A] gi|298273781|gb|EFI15343.1| tyrosine recombinase XerD [Bacteroides sp. D22] Length = 319 Score = 144 bits (363), Expect = 2e-32, Method: Composition-based stats. Identities = 52/275 (18%), Positives = 102/275 (37%), Gaps = 24/275 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQI-----IRKSGDFDYRKITTKHIRSGVESRK 127 +I +Y++ SL++N+ ++ + D++ + D + +G+ Sbjct: 16 IIRKYQQYLKLEKSLSLNTLDAYLTDLDKLMSFLTLEGIYVLDVCLSDLQRFAAGLHDIG 75 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 P S + L+ ++ F++ + + Y+ +P +E PK + T E++ + S Sbjct: 76 IHPRSQARILSGIKSFFRFLILENYLEADPSELLEGPKIGFKLPEVLTVEEIDRIISAVD 135 Query: 188 ----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT-VELPDGFM 242 EG + R E L GLR S+ + L + IK + G+ V + + Sbjct: 136 RSKAEGQRNRAILETLYSCGLRVSELITLKLSDLYFDEGFIKVEGKGSKQRLVPISPRAI 195 Query: 243 KLLAMTPIG-----------KETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289 + + F + ++ K A KAG+ K S H Sbjct: 196 NEIKLYITDRNQIEVKKGHEDFVFVSQRRGKGLSRIMIFHMIKELAQKAGITKNISPHTF 255 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 R AT + GA + G +++ E YT Sbjct: 256 RHSFATHLLEGGANLRAIQCMLGHESIATTEIYTH 290 >gi|145640252|ref|ZP_01795836.1| tyrosine recombinase [Haemophilus influenzae R3021] gi|145274838|gb|EDK14700.1| tyrosine recombinase [Haemophilus influenzae 22.4-21] Length = 297 Score = 144 bits (363), Expect = 2e-32, Method: Composition-based stats. Identities = 48/284 (16%), Positives = 98/284 (34%), Gaps = 27/284 (9%) Query: 73 WLISEYRKSAHW--GSLAVNSRISFESYFDQIIRKSGDFDYR-----KITTKHIRSGVES 125 LI + W L+ N+ S+ + D + + Sbjct: 5 ALIDLFLNEY-WIEKGLSENTVQSYRLDLTALCDWLDKNDLSLETLDSVDLQGFLGERLE 63 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS- 184 + + +S + L++MR LF++ R++Y +P + PK + + T++ + + Sbjct: 64 KGYKATSTARMLSAMRKLFQYLYREKYRVDDPSAVLSSPKLPSRLPKYLTEQQVSDLLNT 123 Query: 185 ---FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG 240 + + E L +GLR ++ ++++ ++ K V + + Sbjct: 124 PDVEVPLELRDKAMLELLYATGLRVTELVSLTIENMSVQQGVVRVIGKGNKERIVPMGEE 183 Query: 241 FMKL-----LAMTPI-----GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAH 287 L P+ + F + Q+M F K A A ++ S H Sbjct: 184 AAYWVRQFMLYGRPVLLNGQSSDVVFPSQRTQQMTRQTFWHRVKHYAILADIDADALSPH 243 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 +R AT + GA + G + + YT A + RL Sbjct: 244 VLRHAFATHLVNHGADLRVVQMLLGHTDLSTTQIYTHVA-KERL 286 >gi|319778432|ref|YP_004129345.1| Tyrosine recombinase XerD [Taylorella equigenitalis MCE9] gi|317108456|gb|ADU91202.1| Tyrosine recombinase XerD [Taylorella equigenitalis MCE9] Length = 297 Score = 144 bits (363), Expect = 2e-32, Method: Composition-based stats. Identities = 48/281 (17%), Positives = 92/281 (32%), Gaps = 25/281 (8%) Query: 74 LISEYRKSAHWGS--LAVNSRISFESYFDQIIRKSGD-FDYRKITTKHIRSGVE--SRKH 128 I + S W L+ N+ S+ + + D KI + + S Sbjct: 8 WIDRFIDSL-WLEEGLSKNTLNSYRLDLNSLNNFLKDSISILKIDSDQLNLWFMEISSSS 66 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 ++ + L ++R + W ++Q + +PCL + K + ++ +++ + Sbjct: 67 KATTINRKLATVRKFYAWCIKQNLILKDPCLGISTRKTPQRLPKSISESQVEELLNAPDL 126 Query: 189 ----GSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDG-- 240 G + + E L +G+R S+ + + + K V + + Sbjct: 127 KTASGLRDKAMLEILYATGMRVSELIAIKTNEISLDAGVVRVTMGKGSKDRLVPMGEESE 186 Query: 241 --FMKLLAM------TPIGKETFFINNDKQKMNATQFSIWFKAKAT--KAGVNKSAHGVR 290 K L+ F+N M F K A + S H +R Sbjct: 187 FYLKKYLSEGRPLLEKDKKNSFVFLNRFGDCMTRQAFWQIIKKYAKYTSIKIPLSPHVLR 246 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 AT + GA + G + + YT A R RL Sbjct: 247 HAFATHLLNHGADLRVVQMLLGHVDISTTQIYTHVA-RERL 286 >gi|315163991|gb|EFU08008.1| tyrosine recombinase XerD [Enterococcus faecalis TX1302] Length = 296 Score = 144 bits (363), Expect = 2e-32, Method: Composition-based stats. Identities = 47/274 (17%), Positives = 107/274 (39%), Gaps = 27/274 (9%) Query: 85 GSLAVNSRISFESYFDQ---IIRKSG----DFDYRKITTKHIRSGVESRKHTPSSAIQFL 137 L+ N+R S+E + +++ G D R + T+ ++S E ++ + +S I+ + Sbjct: 16 RGLSNNTRRSYERDLKKYVAFLQEQGLHSWDEVDRYMITEFLQSLHEEQQAS-ASVIRMI 74 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPR 193 +S+R ++ ++ NP ++ PK+ + + +++ + G + R Sbjct: 75 SSLRGFHQFLRQERLSEHNPMQHIDSPKKVQKLPSTLSVDEVTRLIETPDTSKPLGMRNR 134 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAM----- 247 E + +GLR S+ + L +I ++T K + L D ++ + Sbjct: 135 AILEVMYATGLRVSELIEIKLGDLHLSIGLLQTIGKGDKERIIPLGDYAIQWIQRYMNEA 194 Query: 248 ------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299 + F+N+ + ++ K +A + K + H +R AT + Sbjct: 195 RPQLIKNHPNETHLFVNHHGEPLSRQGIWKNLKQIVREAQIEKNITPHTLRHSFATHLLE 254 Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 GA + G + + YT + R+ Sbjct: 255 NGADLRIVQELLGHADISTTQIYTH-ITKQRMAD 287 >gi|120600077|ref|YP_964651.1| tyrosine recombinase XerD [Shewanella sp. W3-18-1] gi|146291994|ref|YP_001182418.1| tyrosine recombinase XerD [Shewanella putrefaciens CN-32] gi|120560170|gb|ABM26097.1| tyrosine recombinase XerD [Shewanella sp. W3-18-1] gi|145563684|gb|ABP74619.1| tyrosine recombinase XerD [Shewanella putrefaciens CN-32] Length = 300 Score = 144 bits (363), Expect = 2e-32, Method: Composition-based stats. Identities = 51/288 (17%), Positives = 103/288 (35%), Gaps = 26/288 (9%) Query: 74 LISEYRKSAHW--GSLAVNSRISFE---SYFDQIIRKSGDFDYRKITT--KHIRSGVESR 126 LI + W L+ N+ ++ +FD+ ++ G + + + Sbjct: 10 LIDAFLDDL-WSSKGLSDNTLSAYRTDLRHFDRHQQRHGTTLLEATAADVRSYLALRLEQ 68 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF- 185 +S+ + L+S+R + + + + +A++P +E PK ++ + + S Sbjct: 69 HFARTSSARLLSSLRRFYTYLLLTKQIAVDPMALIESPKLTRHLPHSLSESQVDRLLSEP 128 Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGF 241 + + E L +GLR S+ ++ + ++ K G V L + Sbjct: 129 NVDDPVECRDKAMLELLYATGLRVSELVGLTMEQMSLRQGLVRIVGKGGKERLVPLGELA 188 Query: 242 MKLLAM----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGV 289 + + + F +N Q M F K A +AG+ S H + Sbjct: 189 VTEVEAYLKFARQELLGHKQSDVVFPSNRGQMMTRQTFWHRIKLYALRAGIETALSPHTL 248 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 R AT + GA + G + + YT A R RL + + Sbjct: 249 RHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVA-RARLQELHQQ 295 >gi|315268949|gb|ADT95802.1| tyrosine recombinase XerD [Shewanella baltica OS678] Length = 300 Score = 144 bits (363), Expect = 2e-32, Method: Composition-based stats. Identities = 50/277 (18%), Positives = 100/277 (36%), Gaps = 27/277 (9%) Query: 85 GSLAVNSRISFE---SYFDQIIRKSGD--FDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139 L+ N+ ++ +FD+ + G + + + + +S+ + L+S Sbjct: 22 KGLSDNTLSAYRTDLRHFDRYQAQQGVTLLSVSQADVRAYLAFRVEQDFARTSSARLLSS 81 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195 +R + + V+ + ++ +P VE PK ++ + + S + + + Sbjct: 82 LRRFYTYLVQTKQISADPMALVESPKLTRHLPDSLSESQVDRLLSEPNVEDAVECRDKAM 141 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPD------------GFM 242 E L +GLR S+ ++ + ++ K G V L + Sbjct: 142 LELLYATGLRVSELVGLTMEQMSLRQGLVRIVGKGGKERLVPLGELAITEVESYMKFARQ 201 Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADA 300 +LL + F + Q M F K A +AG+ S H +R AT + Sbjct: 202 ELLGNK--QSDVVFPSKRGQMMTRQTFWHRIKLYALRAGIETALSPHTLRHAFATHLLNH 259 Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 GA + G + + YT A R RL + + Sbjct: 260 GADLRVVQLLLGHSDLSTTQIYTHVA-RARLQELHQQ 295 >gi|212695398|ref|ZP_03303526.1| hypothetical protein BACDOR_04947 [Bacteroides dorei DSM 17855] gi|212662033|gb|EEB22607.1| hypothetical protein BACDOR_04947 [Bacteroides dorei DSM 17855] Length = 308 Score = 144 bits (363), Expect = 2e-32, Method: Composition-based stats. Identities = 52/276 (18%), Positives = 106/276 (38%), Gaps = 23/276 (8%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQII-----RKSGDFDYRKITTKHIRSGVES 125 ++ +Y++ SL+ N+ ++ + D+++ D R + +G+ Sbjct: 8 DKILVKYKQYLKLEKSLSDNTVDAYLTDLDKLLAYLTLENINILDVRLENLEDFSAGLHD 67 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 P S + L+ +R +++ + ++Y+ +P +E P+ + T E++ Sbjct: 68 IGIHPRSQARILSGIRSFYRFLIMEDYLESDPTELLESPQTGFKLPEVMTVEEIDLLIGS 127 Query: 186 WSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT-VELPDG 240 G+ + R E L GLR S+ C + L IK + G+ V + Sbjct: 128 IDRGTKEGQRNRAILETLYSCGLRVSELCNLKLSELYFEEGFIKVEGKGSKQRLVPISPR 187 Query: 241 F----------MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHG 288 L+ + P ++ FI+N + ++ K A + G+ K S H Sbjct: 188 AIKEIRLYFTDRNLMKIKPGFEDFVFISNFGKNISRIMVFHIIKELAERIGLKKKISPHT 247 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 R AT + GA + G +++ E YT Sbjct: 248 FRHSFATHLLEGGANLRAIQCMLGHESIGTTEIYTH 283 >gi|329956554|ref|ZP_08297151.1| tyrosine recombinase XerD [Bacteroides clarus YIT 12056] gi|328524451|gb|EGF51521.1| tyrosine recombinase XerD [Bacteroides clarus YIT 12056] Length = 316 Score = 144 bits (363), Expect = 2e-32, Method: Composition-based stats. Identities = 53/274 (19%), Positives = 102/274 (37%), Gaps = 23/274 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQII-----RKSGDFDYRKITTKHIRSGVESRK 127 +I +Y++ +L+ N+ ++ + +++ D + +G+ Sbjct: 16 IIRKYQQYIRLEKALSSNTFDAYMTDLQKLLHFLDGENIDIPDVTPDDLQRFAAGLHDIG 75 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 P S + L+ ++ F + V +Y+ +P +E PK + T E++ + S Sbjct: 76 IHPRSQARILSGIKSFFHFLVIADYLEADPSELLEGPKIGFKIPEVLTIEEIDRIISTVD 135 Query: 188 ----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT-VELPDGFM 242 EG + R E L GLR S+ C + L IK + G+ V + + Sbjct: 136 MEKKEGQRNRAILETLYSCGLRVSELCNLKISDLYFEEGFIKVEGKGSKQRLVPISPRAI 195 Query: 243 KLLAMTPIGK----------ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290 K + + + F+ +++ K A KAG+ K S H R Sbjct: 196 KEIKYWFADRNLGKIKKGYEDYVFLARWGNRISRIMVFHMIKELAEKAGITKNISPHTFR 255 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK 324 AT + GA + G +++ E YT Sbjct: 256 HSFATHLLEGGANLRAIQCMLGHESIATTEIYTH 289 >gi|198245719|ref|YP_002216060.1| integrase protein [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|197940235|gb|ACH77568.1| integrase protein [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] Length = 329 Score = 144 bits (363), Expect = 2e-32, Method: Composition-based stats. Identities = 63/325 (19%), Positives = 117/325 (36%), Gaps = 36/325 (11%) Query: 24 YFRKGHGRRIRLPYPHES--TFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKS 81 Y+ K G + + AY + G RK T L ++ S Sbjct: 23 YYWKPGGSTENIAPADATKAEVWVAYEKKVEG-----------RKNRITFIQLWRKFLAS 71 Query: 82 AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS-SAIQFLTSM 140 A + LA ++ + ++ I+ GD + + I +HIR +++R A +SM Sbjct: 72 ADYADLAPRTQKDYLAHEKYILAVFGDAEAKAIKPEHIRRYMDARGQKSRVQANHEHSSM 131 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP-RLAFEFL 199 +F+W+ ++ YV NPC+ V++ K + R T E+ +++ ++ + R A E Sbjct: 132 SRVFRWSYQRGYVPGNPCVGVDKFP-KPQRDRYITDEE---YRAIYNNATPAVRAAMEIA 187 Query: 200 LYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL--LAMTPIGKETFFI 257 R SD + + I+ KTG D + + Sbjct: 188 YLCAARVSDVLKMNWNQILEKGIFIQQGKTGVKQIKSWTDRLRDAVEICREWGEEGPVIR 247 Query: 258 NNDKQKMNATQFSIWFKAKATKAG------VNKSAHGVRKFSATISADAGATAHELMATY 311 ++ + F+ ++ AG ++ + H + K + TA + Sbjct: 248 TMYGERYSYKGFNEAWRKARKAAGDDLGRPLDCTFHDL-KAKGISDYE--GTAKDKQKYS 304 Query: 312 GWKTVDQAETYTKGA------DRIR 330 G KT Q Y + DR R Sbjct: 305 GHKTESQVLVYDRKVKMSPTLDRKR 329 >gi|170698617|ref|ZP_02889685.1| tyrosine recombinase XerD [Burkholderia ambifaria IOP40-10] gi|170136470|gb|EDT04730.1| tyrosine recombinase XerD [Burkholderia ambifaria IOP40-10] Length = 320 Score = 144 bits (363), Expect = 2e-32, Method: Composition-based stats. Identities = 49/268 (18%), Positives = 90/268 (33%), Gaps = 22/268 (8%) Query: 85 GSLAVNSRISFES---YFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSSAIQFLTSM 140 LA N+ ++ F Q + + D + + +R +S+ + L+ Sbjct: 43 HGLARNTLDAYRRDLVLFSQWLAATHDAPLDSADEAMLIGYIAARSDGKATSSNRRLSVF 102 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLAF 196 R + WAVR+ + +P L + K+ ++ ++ G+ + R Sbjct: 103 RRYYGWAVREHRASADPTLRITSAKQAARFPSTLSEAQVEALLGAPDIGTPLGLRDRTML 162 Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------ELPDGFMKLLAM 247 E + SGLR S+ + N ++ G+ + + Sbjct: 163 ELMYASGLRVSELVTLKTVEVGLNEGVVRVMGKGSKERLVPFGEVAHGWIERYLRDARPA 222 Query: 248 T--PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGAT 303 + F+ M QF K A +A V + S H +R AT + GA Sbjct: 223 LLGARAADALFVTARGDGMTRQQFWNIIKRHAQQAAVRAHLSPHTLRHAFATHLLNHGAD 282 Query: 304 AHELMATYGWKTVDQAETYTKGADRIRL 331 + G + + YT A R RL Sbjct: 283 LRVVQLLLGHSDISTTQIYTHVA-RERL 309 >gi|145628659|ref|ZP_01784459.1| tyrosine recombinase [Haemophilus influenzae 22.1-21] gi|144979129|gb|EDJ88815.1| tyrosine recombinase [Haemophilus influenzae 22.1-21] gi|309972530|gb|ADO95731.1| Site-specific, tyrosine recombinase XerD [Haemophilus influenzae R2846] Length = 297 Score = 144 bits (363), Expect = 2e-32, Method: Composition-based stats. Identities = 48/284 (16%), Positives = 98/284 (34%), Gaps = 27/284 (9%) Query: 73 WLISEYRKSAHW--GSLAVNSRISFESYFDQIIRKSGDFDYR-----KITTKHIRSGVES 125 LI + W L+ N+ S+ + D + + Sbjct: 5 ALIDLFLNEY-WIEKGLSENTVQSYRLDLTALCDWLDKNDLSLETLDAVDLQGFLGERLE 63 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS- 184 + + +S + L++MR LF++ R++Y +P + PK + + T++ + + Sbjct: 64 KGYKATSTARMLSAMRKLFQYLYREKYRVDDPSAVLSSPKLPSRLPKYLTEQQVSDLLNT 123 Query: 185 ---FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG 240 + + E L +GLR ++ ++++ ++ K V + + Sbjct: 124 PDVEVPLELRDKAMLELLYATGLRVTELVSLTIENMSVQQGVVRVIGKGNKERIVPMGEE 183 Query: 241 FMKL-----LAMTPI-----GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAH 287 L P+ + F + Q+M F K A A ++ S H Sbjct: 184 AAYWVRQFMLYGRPVLLNGQSSDVVFPSQRTQQMTRQTFWHRVKHYAILADIDADALSPH 243 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 +R AT + GA + G + + YT A + RL Sbjct: 244 VLRHAFATHLVNHGADLRVVQMLLGHTDLSTTQIYTHVA-KERL 286 >gi|329848435|ref|ZP_08263463.1| phage integrase [Asticcacaulis biprosthecum C19] gi|328843498|gb|EGF93067.1| phage integrase [Asticcacaulis biprosthecum C19] Length = 397 Score = 144 bits (363), Expect = 2e-32, Method: Composition-based stats. Identities = 67/373 (17%), Positives = 124/373 (33%), Gaps = 35/373 (9%) Query: 9 PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68 V + + G YFRKG R L P + + + A+ + + K Sbjct: 14 KHVQRVKRAKGNTDLYFRKGDYREGPLSSPDGTQALKDEVDAIL-KRLEATSRAVAKPKT 72 Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH 128 TL +++Y +SA + +LA +++ ++ Y D++ GD IT I ++ Sbjct: 73 GTLAGALNDYNRSADFITLARSTQNGYQDYIDELTDDCGDVLLADITRSWIMELRDAWAV 132 Query: 129 TP-SSAIQFLTSMRVLFKWAVRQE---YVAINP---CLSVERPKRKTEGIRPWTKEDMQQ 181 +A L ++ + + + +P +V RP EG W +++ Sbjct: 133 RGYRAANMRLQLLKNALAPIIADDTDNRIKGDPFRSVENVRRPHDTPEGHPIWEDFEVEA 192 Query: 182 FKSFWSEGSQPRLAFEFLL--YSGLRCSDSCRAGV---------QHLQNNIFSIKTQKTG 230 S P LA L Y G R + L + T+K Sbjct: 193 AISAAITRKHPGLARAIALGRYGGFRKGTIITVPMRARVVGYNEDGLPERRINWITEKRK 252 Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWF--------KAKATKAGV 282 + + +L TP T N D + F +A +A + Sbjct: 253 VLADRREDERLTAVLDATPNRAYTLAYNADGMAWTSRALGHAFDRLMNSLARAGKVRADM 312 Query: 283 N--------KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIK 334 + + HG++ A + A+ +MA T A Y + A R + Sbjct: 313 DQDGELFCPLTIHGLKHSRGVELAQSNASDAGIMAQLDHATTRAAAIYRRQAQRRVMSDH 372 Query: 335 NSRRISSVVDSDD 347 ++ +V + Sbjct: 373 AQDQVDNVRELRK 385 >gi|320540116|ref|ZP_08039771.1| site-specific tyrosine recombinase [Serratia symbiotica str. Tucson] gi|320029782|gb|EFW11806.1| site-specific tyrosine recombinase [Serratia symbiotica str. Tucson] Length = 299 Score = 144 bits (362), Expect = 2e-32, Method: Composition-based stats. Identities = 43/265 (16%), Positives = 92/265 (34%), Gaps = 23/265 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDY-----RKITTKHIRSGVESRKHTPSSAIQFLTS 139 +LA N+ +S+ ++ + + + + + + +S+ + L++ Sbjct: 20 RNLAENTLVSYRLDLQALVAWLNHQNITLLQAQALDLQAFLAERVDGGYKATSSARLLSA 79 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195 MR LF++ R++ A +P + PK + ++ + + + Sbjct: 80 MRRLFQYLYREKLRADDPTTRLASPKLPQRLPKDLSEAQIDALLKAPCVDQPIELRDKAM 139 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGKET 254 E L +GLR S+ + + ++ K V L + + + Sbjct: 140 LEVLYATGLRVSELVGLTISDVSLRQGVVRVIGKGNKERLVPLGEEAVYWIENYLEHGRP 199 Query: 255 FFINNDK----------QKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAG 301 + +N+ Q+M F K A AG++ S H +R AT + G Sbjct: 200 WLVNSQALDVLFPSQRCQQMTRQTFWHRIKHYAILAGIDSERLSPHVLRHAFATHLLNHG 259 Query: 302 ATAHELMATYGWKTVDQAETYTKGA 326 A + G + + YT A Sbjct: 260 ADLRVVQMLLGHSDLSTTQIYTHVA 284 >gi|329571728|gb|EGG53409.1| tyrosine recombinase XerD [Enterococcus faecalis TX1467] Length = 305 Score = 144 bits (362), Expect = 2e-32, Method: Composition-based stats. Identities = 48/289 (16%), Positives = 109/289 (37%), Gaps = 27/289 (9%) Query: 85 GSLAVNSRISFESYFDQ---IIRKSG----DFDYRKITTKHIRSGVESRKHTPSSAIQFL 137 L+ N+R S+E + +++ G D R + T+ ++S E ++ + +S I+ + Sbjct: 16 RGLSNNTRRSYERDLKKYVAFLQEQGLHSWDEVDRYMITEFLQSLHEEQQAS-ASVIRMI 74 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPR 193 +S+R ++ ++ NP ++ PK+ + + +++ + G + R Sbjct: 75 SSLRGFHQFLRQERLSEHNPMQHIDSPKKVQKLPSTLSVDEVTRLIETPDTSKPLGMRNR 134 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAM----- 247 E + +GLR S+ + L +I ++T K + L D ++ + Sbjct: 135 AILEVMYATGLRVSELIEIKLGDLHLSIGLLQTIGKGDKERIIPLGDYAIQWIERYMNEA 194 Query: 248 ------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299 + F+N+ + ++ K +A + K + H +R AT + Sbjct: 195 RPQLIKNHPNETHLFVNHHGEPLSRQGIWKNLKQIVREAQIEKNITPHTLRHSFATHLLE 254 Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348 GA + G + + YT + R+ + P Sbjct: 255 NGADLRIVQELLGHADISTTQIYTH-ITKQRMADVYKEHFPRASFARMP 302 >gi|312795208|ref|YP_004028130.1| integrase/recombinase (XerD/RipX family) [Burkholderia rhizoxinica HKI 454] gi|312166983|emb|CBW73986.1| Integrase/recombinase (XerD/RipX family) [Burkholderia rhizoxinica HKI 454] Length = 308 Score = 144 bits (362), Expect = 2e-32, Method: Composition-based stats. Identities = 48/273 (17%), Positives = 84/273 (30%), Gaps = 21/273 (7%) Query: 85 GSLAVNSRISFESYFDQIIR---KSGDFDYRKITTKHIRSGVESRKH-TPSSAIQFLTSM 140 L+ N+ ++ + + + + R SSA + L+ Sbjct: 31 HGLSRNTLDAYRRDLSLYCDWLAATHERTLDATRESDLNGYLAVRSDGKASSANRRLSVF 90 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAF 196 R F WA+R+ VA +P L + ++ + ++ G + R Sbjct: 91 RRYFAWALREHRVAADPTLRIRSARQPPRFPSSLNEAQVEALLGAPDLDTPLGLRDRAML 150 Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFMKLLAM-------- 247 E + SGLR S+ + N ++ G V D L Sbjct: 151 ELMYASGLRVSELVTLKTVEVGLNEGVVRVMGKGAKERLVPFGDEARGWLERYLRDARAV 210 Query: 248 --TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGAT 303 G + F+ M QF K A +A ++ S H +R AT + GA Sbjct: 211 LLGARGADALFVTARGGAMTRQQFWNIIKRYALRADIHVPLSPHTLRHAFATHLLNHGAD 270 Query: 304 AHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336 + G + + YT A + Sbjct: 271 LRVVQMLLGHSDISTTQIYTHVARERLKALHAI 303 >gi|172061520|ref|YP_001809172.1| site-specific tyrosine recombinase XerD [Burkholderia ambifaria MC40-6] gi|171994037|gb|ACB64956.1| tyrosine recombinase XerD [Burkholderia ambifaria MC40-6] Length = 322 Score = 144 bits (362), Expect = 2e-32, Method: Composition-based stats. Identities = 49/268 (18%), Positives = 88/268 (32%), Gaps = 22/268 (8%) Query: 85 GSLAVNSRISFES---YFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSSAIQFLTSM 140 LA N+ ++ F Q + D + + +R +S+ + L+ Sbjct: 45 HGLARNTLDAYRRDLVLFSQWLAAMHDAPLDSADEAMLIGYIAARSDGKATSSNRRLSVF 104 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLAF 196 R + WAVR+ +P L + K+ ++ ++ G+ + R Sbjct: 105 RRYYGWAVREHRANADPTLRITSAKQAARFPSTLSEAQVEALLGAPDVGTPLGLRDRTML 164 Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------ELPDGFMKLLAM 247 E + SGLR S+ + N ++ G+ + + Sbjct: 165 ELMYASGLRVSELVTLKTVEVGLNEGVVRVMGKGSKERLVPFGEVAHGWIERYLRDARPA 224 Query: 248 T--PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGAT 303 + F+ M QF K A +A V + S H +R AT + GA Sbjct: 225 LLGARAADALFVTARGDGMTRQQFWNIIKRHAQQADVRAHLSPHTLRHAFATHLLNHGAD 284 Query: 304 AHELMATYGWKTVDQAETYTKGADRIRL 331 + G + + YT A R RL Sbjct: 285 LRVVQLLLGHSDISTTQIYTHVA-RERL 311 >gi|238787321|ref|ZP_04631120.1| Tyrosine recombinase xerD [Yersinia frederiksenii ATCC 33641] gi|238724583|gb|EEQ16224.1| Tyrosine recombinase xerD [Yersinia frederiksenii ATCC 33641] Length = 299 Score = 144 bits (362), Expect = 2e-32, Method: Composition-based stats. Identities = 50/278 (17%), Positives = 95/278 (34%), Gaps = 26/278 (9%) Query: 74 LISEYRKSAHW--GSLAVNSRISFESYFDQII---RKSGDFDYRK--ITTKHIRSGVESR 126 LI ++ A W +LA N+ S+ + G R + + Sbjct: 8 LIEQFL-DALWLERNLAENTLASYRLDLHALSGWLEHHGSDLLRAGSQDLQSFLAERIEG 66 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF- 185 + +S+ + L++MR LF++ R++ +P + PK + ++ + + Sbjct: 67 GYKATSSARLLSAMRRLFQYLYREKLREDDPTALLSSPKLPQRLPKDLSEAQVDALLNSP 126 Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGF 241 + + E L +GLR S+ + + ++ K V L + Sbjct: 127 NVDIPLELRDKAMLEVLYATGLRVSELVGLTISDVSLRQGVVRVIGKGNKERLVPLGEEA 186 Query: 242 MKLLAMTPIGKETFFIN----------NDKQKMNATQFSIWFKAKATKAGVN---KSAHG 288 + + + IN N Q+M F K A AG++ S H Sbjct: 187 VYWIENYMEHGRPWLINGQSLDVLFPSNRSQQMTRQTFWHRIKHYAILAGIDSERLSPHV 246 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 +R AT + GA + G + + YT A Sbjct: 247 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA 284 >gi|169831443|ref|YP_001717425.1| tyrosine recombinase XerD [Candidatus Desulforudis audaxviator MP104C] gi|169638287|gb|ACA59793.1| tyrosine recombinase XerD [Candidatus Desulforudis audaxviator MP104C] Length = 295 Score = 144 bits (362), Expect = 2e-32, Method: Composition-based stats. Identities = 51/272 (18%), Positives = 96/272 (35%), Gaps = 23/272 (8%) Query: 85 GSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIRSGVESRKH---TPSSAIQFLT 138 L+ N+ ++ + G D + HI + + ++K P++ + L+ Sbjct: 16 RGLSENTLAAYRGDLQQFGAFLAAQGVRDLNDLQASHITAYLLAQKRLGRRPATVARRLS 75 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRL 194 ++R K+ + V NP PK+ R +++ + + G + R Sbjct: 76 AVRAFLKFLTAEGLVTANPAEYTGSPKQAQRLPRVLRVDEVDRLLTAPDTANPMGLRDRA 135 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVEL--------PDGFMKLL 245 E L SGLR S++ V L ++ K G V + + + Sbjct: 136 LMEVLYASGLRVSEAVNLKVGDLDLRGGLVRCVGKGGRERVVPVGGEAVRLVDEYLARSR 195 Query: 246 AMTPIGKET--FFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAG 301 + G+ T F+N Q + K A +AG+ K + H +R AT + G Sbjct: 196 PLLLKGRRTRFLFVNRRGQPLTRQTVWKLLKRYAREAGIQKEITPHTLRHSFATHLLENG 255 Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 A + G + + YT R + Sbjct: 256 ADLRAVQEMLGHADIVTTQIYTHLTSRGLRAV 287 >gi|126665073|ref|ZP_01736056.1| site-specific tyrosine recombinase XerD [Marinobacter sp. ELB17] gi|126630443|gb|EBA01058.1| site-specific tyrosine recombinase XerD [Marinobacter sp. ELB17] Length = 314 Score = 144 bits (362), Expect = 2e-32, Method: Composition-based stats. Identities = 48/276 (17%), Positives = 93/276 (33%), Gaps = 25/276 (9%) Query: 86 SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR-------KHTPSSAIQFLT 138 L+ +R ++ S + + + RS + + S+A + L+ Sbjct: 35 GLSEKTREAYRSDLGGLAQWLQGQPGTPLLIATQRSDLLTWLSGGLAGGVKASTAARRLS 94 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRL 194 +R +++ +R+ + +P L +E PK T+ ++ + + + Sbjct: 95 GIRRFYRYLLREGLIPEDPTLRIESPKLTRPLPDTLTEAEVNALLTEPDPEVPIELRDKA 154 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLAMTPIGKE 253 E L GLR ++ + + ++ T K V L + + L Sbjct: 155 MLEILYGCGLRVTELTSLRLDQVNLRQGVVRITGKGDKDRLVPLGEEAIDWLQRYIKEAR 214 Query: 254 T----------FFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAG 301 F N + M F K A + G+ K S H +R AT + G Sbjct: 215 PELLKGHACDDLFPGNRPKAMTRQTFWHRIKHYAARTGIQKHLSPHTLRHAFATHLLNHG 274 Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 A + G + + YT A R RL + + Sbjct: 275 ADLRVVQMLLGHADLSTTQIYTHVA-RQRLQELHRQ 309 >gi|29376101|ref|NP_815255.1| integrase/recombinase XerD, putative [Enterococcus faecalis V583] gi|227518728|ref|ZP_03948777.1| site-specific DNA tyrosine recombinase, XerD [Enterococcus faecalis TX0104] gi|227553337|ref|ZP_03983386.1| site-specific DNA tyrosine recombinase, XerD [Enterococcus faecalis HH22] gi|255975876|ref|ZP_05426462.1| phage integrase [Enterococcus faecalis T2] gi|256619040|ref|ZP_05475886.1| integrase [Enterococcus faecalis ATCC 4200] gi|256762466|ref|ZP_05503046.1| phage integrase [Enterococcus faecalis T3] gi|256958957|ref|ZP_05563128.1| integrase [Enterococcus faecalis DS5] gi|256961950|ref|ZP_05566121.1| phage integrase [Enterococcus faecalis Merz96] gi|256965148|ref|ZP_05569319.1| phage integrase [Enterococcus faecalis HIP11704] gi|257078988|ref|ZP_05573349.1| phage integrase [Enterococcus faecalis JH1] gi|257082573|ref|ZP_05576934.1| phage integrase [Enterococcus faecalis E1Sol] gi|257085206|ref|ZP_05579567.1| phage integrase [Enterococcus faecalis Fly1] gi|257086767|ref|ZP_05581128.1| phage integrase [Enterococcus faecalis D6] gi|257416070|ref|ZP_05593064.1| integrase [Enterococcus faecalis AR01/DG] gi|257419273|ref|ZP_05596267.1| phage integrase [Enterococcus faecalis T11] gi|293383018|ref|ZP_06628936.1| tyrosine recombinase XerD [Enterococcus faecalis R712] gi|293389493|ref|ZP_06633950.1| tyrosine recombinase XerD [Enterococcus faecalis S613] gi|294781340|ref|ZP_06746683.1| tyrosine recombinase XerD [Enterococcus faecalis PC1.1] gi|300860304|ref|ZP_07106391.1| tyrosine recombinase XerD [Enterococcus faecalis TUSoD Ef11] gi|307271041|ref|ZP_07552324.1| tyrosine recombinase XerD [Enterococcus faecalis TX4248] gi|307273248|ref|ZP_07554494.1| tyrosine recombinase XerD [Enterococcus faecalis TX0855] gi|307274985|ref|ZP_07556148.1| tyrosine recombinase XerD [Enterococcus faecalis TX2134] gi|307278097|ref|ZP_07559181.1| tyrosine recombinase XerD [Enterococcus faecalis TX0860] gi|312907511|ref|ZP_07766502.1| tyrosine recombinase XerD [Enterococcus faecalis DAPTO 512] gi|312910129|ref|ZP_07768976.1| tyrosine recombinase XerD [Enterococcus faecalis DAPTO 516] gi|29343563|gb|AAO81325.1| integrase/recombinase XerD, putative [Enterococcus faecalis V583] gi|227073809|gb|EEI11772.1| site-specific DNA tyrosine recombinase, XerD [Enterococcus faecalis TX0104] gi|227177524|gb|EEI58496.1| site-specific DNA tyrosine recombinase, XerD [Enterococcus faecalis HH22] gi|255968748|gb|EET99370.1| phage integrase [Enterococcus faecalis T2] gi|256598567|gb|EEU17743.1| integrase [Enterococcus faecalis ATCC 4200] gi|256683717|gb|EEU23412.1| phage integrase [Enterococcus faecalis T3] gi|256949453|gb|EEU66085.1| integrase [Enterococcus faecalis DS5] gi|256952446|gb|EEU69078.1| phage integrase [Enterococcus faecalis Merz96] gi|256955644|gb|EEU72276.1| phage integrase [Enterococcus faecalis HIP11704] gi|256987018|gb|EEU74320.1| phage integrase [Enterococcus faecalis JH1] gi|256990603|gb|EEU77905.1| phage integrase [Enterococcus faecalis E1Sol] gi|256993236|gb|EEU80538.1| phage integrase [Enterococcus faecalis Fly1] gi|256994797|gb|EEU82099.1| phage integrase [Enterococcus faecalis D6] gi|257157898|gb|EEU87858.1| integrase [Enterococcus faecalis ARO1/DG] gi|257161101|gb|EEU91061.1| phage integrase [Enterococcus faecalis T11] gi|291079683|gb|EFE17047.1| tyrosine recombinase XerD [Enterococcus faecalis R712] gi|291081110|gb|EFE18073.1| tyrosine recombinase XerD [Enterococcus faecalis S613] gi|294451570|gb|EFG20029.1| tyrosine recombinase XerD [Enterococcus faecalis PC1.1] gi|300849343|gb|EFK77093.1| tyrosine recombinase XerD [Enterococcus faecalis TUSoD Ef11] gi|306505494|gb|EFM74680.1| tyrosine recombinase XerD [Enterococcus faecalis TX0860] gi|306508433|gb|EFM77540.1| tyrosine recombinase XerD [Enterococcus faecalis TX2134] gi|306510233|gb|EFM79257.1| tyrosine recombinase XerD [Enterococcus faecalis TX0855] gi|306512539|gb|EFM81188.1| tyrosine recombinase XerD [Enterococcus faecalis TX4248] gi|310626539|gb|EFQ09822.1| tyrosine recombinase XerD [Enterococcus faecalis DAPTO 512] gi|311289402|gb|EFQ67958.1| tyrosine recombinase XerD [Enterococcus faecalis DAPTO 516] gi|315027289|gb|EFT39221.1| tyrosine recombinase XerD [Enterococcus faecalis TX2137] gi|315033946|gb|EFT45878.1| tyrosine recombinase XerD [Enterococcus faecalis TX0017] gi|315036955|gb|EFT48887.1| tyrosine recombinase XerD [Enterococcus faecalis TX0027] gi|315144440|gb|EFT88456.1| tyrosine recombinase XerD [Enterococcus faecalis TX2141] gi|315147241|gb|EFT91257.1| tyrosine recombinase XerD [Enterococcus faecalis TX4244] gi|315150560|gb|EFT94576.1| tyrosine recombinase XerD [Enterococcus faecalis TX0012] gi|315160468|gb|EFU04485.1| tyrosine recombinase XerD [Enterococcus faecalis TX0645] gi|315169058|gb|EFU13075.1| tyrosine recombinase XerD [Enterococcus faecalis TX1341] gi|315172335|gb|EFU16352.1| tyrosine recombinase XerD [Enterococcus faecalis TX1346] gi|315575890|gb|EFU88081.1| tyrosine recombinase XerD [Enterococcus faecalis TX0309B] gi|315580542|gb|EFU92733.1| tyrosine recombinase XerD [Enterococcus faecalis TX0309A] gi|323480700|gb|ADX80139.1| tyrosine recombinase XerD [Enterococcus faecalis 62] Length = 296 Score = 144 bits (362), Expect = 3e-32, Method: Composition-based stats. Identities = 47/274 (17%), Positives = 107/274 (39%), Gaps = 27/274 (9%) Query: 85 GSLAVNSRISFESYFDQ---IIRKSG----DFDYRKITTKHIRSGVESRKHTPSSAIQFL 137 L+ N+R S+E + +++ G D R + T+ ++S E ++ + +S I+ + Sbjct: 16 RGLSNNTRRSYERDLKKYVAFLQEQGLHSWDEVDRYMITEFLQSLHEEQQAS-ASVIRMI 74 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPR 193 +S+R ++ ++ NP ++ PK+ + + +++ + G + R Sbjct: 75 SSLRGFHQFLRQERLSEHNPMQHIDSPKKVQKLPSTLSVDEVTRLIETPDTSKPLGMRNR 134 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAM----- 247 E + +GLR S+ + L +I ++T K + L D ++ + Sbjct: 135 AILEVMYATGLRVSELIEIKLGDLHLSIGLLQTIGKGDKERIIPLGDYAIQWIERYMNEA 194 Query: 248 ------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299 + F+N+ + ++ K +A + K + H +R AT + Sbjct: 195 RPQLIKNHPNETHLFVNHHGEPLSRQGIWKNLKQIVREAQIEKNITPHTLRHSFATHLLE 254 Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 GA + G + + YT + R+ Sbjct: 255 NGADLRIVQELLGHADISTTQIYTH-ITKQRMAD 287 >gi|256829239|ref|YP_003157967.1| tyrosine recombinase XerD [Desulfomicrobium baculatum DSM 4028] gi|256578415|gb|ACU89551.1| tyrosine recombinase XerD [Desulfomicrobium baculatum DSM 4028] Length = 292 Score = 144 bits (362), Expect = 3e-32, Method: Composition-based stats. Identities = 48/280 (17%), Positives = 94/280 (33%), Gaps = 21/280 (7%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYF----DQIIRKSGDFDYRKITTKHIRSGVESRKH- 128 I Y + LA + ++ S D + G T + RK Sbjct: 5 IDAYLQHLTVIRGLAEKTVEAYGSDLLFFRDFLSELGGSLHQIDEHTLFLYMVHLRRKGL 64 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF--- 185 +S + ++S+R F++ V++ ++A +P ++ PK + +++++ Sbjct: 65 KNTSMARNISSLRGFFEFLVQERHLASSPAALLDSPKLVRKLPEVLSRDEVTALLDRPAL 124 Query: 186 -WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG--- 240 G + R E L GLR S+ ++ K V L D Sbjct: 125 NTPLGFRDRTMLELLYACGLRVSELVSLTAPDFDPQAGLLRVLGKGSKERYVPLHDSAVS 184 Query: 241 -----FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFS 293 + + +T F+N ++ + A +AG+ + S H +R Sbjct: 185 FMLSFLRQWRPLFGPKTDTVFLNRSGLGLSRQGVWKLLRRYALEAGITRPVSPHTLRHSF 244 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 AT + GA + G + E YT + + Sbjct: 245 ATHLLEGGADLRTVQILLGHSDIMATEIYTHVQSARMVAL 284 >gi|262373947|ref|ZP_06067224.1| tyrosine recombinase XerD [Acinetobacter junii SH205] gi|262310958|gb|EEY92045.1| tyrosine recombinase XerD [Acinetobacter junii SH205] Length = 306 Score = 144 bits (362), Expect = 3e-32, Method: Composition-based stats. Identities = 52/300 (17%), Positives = 107/300 (35%), Gaps = 21/300 (7%) Query: 57 KREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF---DYRK 113 K+ I + K P L +L +R +++ ++R ++ S Q ++ Sbjct: 4 KKPRIPAAVKIPEHLSFL-HGFRDYLVAQTVSPHTRNAYLSDLIQCSDLHDTVVLTEWSS 62 Query: 114 ITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173 + + +P S + L+++R FK+ Q+ NP + + PK + Sbjct: 63 DDIADVLIVLTKHGKSPRSIARCLSALRQFFKFLREQKLRDDNPVATHQSPKIGRALPKD 122 Query: 174 WTKEDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQK 228 ++ D++ + G + R E L GLR ++ ++ + ++ T K Sbjct: 123 LSEHDVEALINAPDISTALGLRDRAMLEVLYACGLRVTELLNLRLELINLKQGFLRITGK 182 Query: 229 TGTIITVELPDGFMKLL---------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATK 279 V L + + + + F+ M+ F K A + Sbjct: 183 GNKERLVPLGQYACEWVEKYLSESRPQLYKSNTDYLFLTQHGGIMSRQNFWYAIKRYALQ 242 Query: 280 AGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 A + S H +R AT + GA + G + + YT A + R+ +S+ Sbjct: 243 ANISAELSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-QHRMQELHSK 301 >gi|238796542|ref|ZP_04640049.1| Tyrosine recombinase xerD [Yersinia mollaretii ATCC 43969] gi|238719520|gb|EEQ11329.1| Tyrosine recombinase xerD [Yersinia mollaretii ATCC 43969] Length = 299 Score = 144 bits (362), Expect = 3e-32, Method: Composition-based stats. Identities = 50/278 (17%), Positives = 97/278 (34%), Gaps = 26/278 (9%) Query: 74 LISEYRKSAHW--GSLAVNSRISFESYFDQI---IRKSGDFDYRK--ITTKHIRSGVESR 126 LI ++ A W +LA N+ S+ + + G R + + Sbjct: 8 LIEQFL-DALWLERNLAENTLASYRLDLHALTGWLDHHGSDLLRAGSQELQSFLAERIEG 66 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF- 185 + +S+ + L++MR LF++ R++ +P ++ PK + ++ + + Sbjct: 67 GYKATSSARLLSAMRRLFQYLYREKLRDDDPTAALSSPKLPQRLPKDLSEAQVDALLNAP 126 Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGF 241 + + E L +GLR S+ + + ++ K V L + Sbjct: 127 NVDIPLELRDKAMLEVLYATGLRVSELVGLTISDVSLRQGVVRVIGKGNKERLVPLGEEA 186 Query: 242 MKLLAMTPIGKETFFIN----------NDKQKMNATQFSIWFKAKATKAGVN---KSAHG 288 + + + IN N Q+M F K A AG++ S H Sbjct: 187 VYWIENYMEHGRPWLINGQALDVLFPSNRSQQMTRQTFWHRIKHYAILAGIDSERLSPHV 246 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 +R AT + GA + G + + YT A Sbjct: 247 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA 284 >gi|260771236|ref|ZP_05880163.1| tyrosine recombinase XerD [Vibrio furnissii CIP 102972] gi|260613833|gb|EEX39025.1| tyrosine recombinase XerD [Vibrio furnissii CIP 102972] gi|315179158|gb|ADT86072.1| site-specific tyrosine recombinase XerD [Vibrio furnissii NCTC 11218] Length = 302 Score = 144 bits (362), Expect = 3e-32, Method: Composition-based stats. Identities = 47/280 (16%), Positives = 107/280 (38%), Gaps = 26/280 (9%) Query: 72 KWLISEYRKSAHW--GSLAVNSRISFE----SYFDQIIRKSGDFDYRKIT-TKHIRSGVE 124 + L+ ++ A W L+ N+ +S+ D + R + D+ ++ + ++ + Sbjct: 9 QGLVEQFL-DAMWMERGLSENTLMSYRNDLMKLLDWMQRHNYRLDFISLSGLQEYQTWLV 67 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 + + +S + L+++R LF++ R++ A +P + PK + ++ + S Sbjct: 68 DQDYKQTSRARMLSAIRRLFQYLHREKMRADDPSALLISPKLPKRLPKDLSEAQVDALLS 127 Query: 185 F----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPD 239 + + E L +GLR ++ ++++ ++ K G V + + Sbjct: 128 APNPDDPIELRDKAMLELLYATGLRVTELVSLTMENISLRQGVVRVIGKGGKERLVPMGE 187 Query: 240 GFMKLLAMTPIGK----------ETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSA 286 ++ + + F + Q+M F K A AG++ S Sbjct: 188 NAIEWIETFLAQGRSHLLGEQTSDVVFPSKRAQQMTRQTFWHRIKHYAVIAGIDVDKLSP 247 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 H +R AT + GA + G + + YT A Sbjct: 248 HVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVA 287 >gi|196034794|ref|ZP_03102201.1| integrase/recombinase XerD [Bacillus cereus W] gi|195992333|gb|EDX56294.1| integrase/recombinase XerD [Bacillus cereus W] Length = 296 Score = 144 bits (362), Expect = 3e-32, Method: Composition-based stats. Identities = 45/271 (16%), Positives = 104/271 (38%), Gaps = 25/271 (9%) Query: 85 GSLAVNSRISFES----YFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI---QFL 137 LA N+ +S+E Y + + + ++T HI + ++ K S+ + + Sbjct: 16 KGLAKNTVVSYERDLKSYVKYLQKVEQAKSFHEVTRLHIVNFLQHLKENGKSSKTLARHI 75 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPR 193 S+R ++ +R+ V +P + +E P+ + + + + ++++ G + + Sbjct: 76 ASIRSFHQFLLRERAVEHDPSVHIETPQGERKLPKVLSVDEVEALLQTPKMTSVFGVRDK 135 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLAMTPIGK 252 E L +GLR S+ ++ + + ++ K + L + + Sbjct: 136 AMLELLYATGLRVSELIALNLEDVHLTMGFVRCVGKGNKERIIPLGSLATEAIQKYIEKG 195 Query: 253 ----------ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300 + F+N+ +++ F K A +A + K + H +R AT + Sbjct: 196 RRELMGKKVVDALFLNHHGNRLSRQGFWKILKRLAKEANIEKELTPHTLRHSFATHLLEN 255 Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRL 331 GA + G + + YT + RL Sbjct: 256 GADLRAVQEMLGHADISTTQIYTH-VSKTRL 285 >gi|255011423|ref|ZP_05283549.1| putative tyrosine recombinase [Bacteroides fragilis 3_1_12] gi|313149239|ref|ZP_07811432.1| integrase [Bacteroides fragilis 3_1_12] gi|313138006|gb|EFR55366.1| integrase [Bacteroides fragilis 3_1_12] Length = 319 Score = 144 bits (362), Expect = 3e-32, Method: Composition-based stats. Identities = 50/274 (18%), Positives = 100/274 (36%), Gaps = 23/274 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITT-----KHIRSGVESRK 127 +I +Y++ SL+ N+ ++ + D+++ D + + +G+ Sbjct: 16 IIKKYQQYLKLEKSLSKNTLDAYLTDLDKLLNFLSDEGVDILEISLKDLQRFAAGLHDIG 75 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 S + ++ ++ F + + +Y+ +P +E PK + T E++ S Sbjct: 76 IHARSQARIISGIKSFFHFLIMADYIEADPSELLEGPKIGFKLPEVLTVEEIDHIISTVD 135 Query: 188 ----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT-VELPDGF- 241 EG + R E L GLR S+ + L N IK + G+ V + Sbjct: 136 LSKNEGQRNRAILETLYSCGLRVSELTNLKLSDLYFNEGFIKVEGKGSKQRLVPISPRAI 195 Query: 242 ---------MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290 + + ++ F++ ++ K A AG+ K S H R Sbjct: 196 QEIKYYFMDRNRINIKKDYEDYLFLSRRGTHLSRIMIFHLIKELADMAGITKNISPHTFR 255 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK 324 AT + GA + G +++ E YT Sbjct: 256 HSFATHLLEGGANLRAIQCMLGHESISTTEIYTH 289 >gi|293394605|ref|ZP_06638899.1| tyrosine recombinase XerD [Serratia odorifera DSM 4582] gi|291422914|gb|EFE96149.1| tyrosine recombinase XerD [Serratia odorifera DSM 4582] Length = 299 Score = 144 bits (362), Expect = 3e-32, Method: Composition-based stats. Identities = 50/279 (17%), Positives = 101/279 (36%), Gaps = 26/279 (9%) Query: 73 WLISEYRKSAHW--GSLAVNSRISFE----SYFDQIIRKSGDF-DYRKITTKHIRSGVES 125 LI ++ A W +LA N+ S+ + + + + + D + + + Sbjct: 7 ALIEQFL-DALWLERNLAENTLASYRLDLQALVNWLAQHNSDLLQAEALDLQAFLAERVE 65 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + SS+ + L++MR LF++ R++ A +P + PK + ++ + Sbjct: 66 GGYKASSSARLLSAMRRLFQYLYREKMRADDPTALLASPKLPQRLPKDLSEAQIDALLQA 125 Query: 186 ----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG 240 + + E L +GLR S+ + + ++ K V L + Sbjct: 126 PCVDQPLELRDKAMLEVLYATGLRVSELVGLSISDVSLRQGVVRVIGKGNKERLVPLGEE 185 Query: 241 -------FMKLLAMTPIGKETF---FINNDKQKMNATQFSIWFKAKATKAGVN---KSAH 287 +++ + +T F + Q+M F K A AG++ S H Sbjct: 186 AVYWIENYLEHGRPWLVNGQTIDVLFPSQRCQQMTRQTFWHRIKHYAILAGIDSERLSPH 245 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 +R AT + GA + G + + YT A Sbjct: 246 VLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA 284 >gi|304410563|ref|ZP_07392181.1| tyrosine recombinase XerD [Shewanella baltica OS183] gi|307304656|ref|ZP_07584406.1| tyrosine recombinase XerD [Shewanella baltica BA175] gi|304351047|gb|EFM15447.1| tyrosine recombinase XerD [Shewanella baltica OS183] gi|306912058|gb|EFN42482.1| tyrosine recombinase XerD [Shewanella baltica BA175] Length = 300 Score = 144 bits (362), Expect = 3e-32, Method: Composition-based stats. Identities = 51/275 (18%), Positives = 102/275 (37%), Gaps = 23/275 (8%) Query: 85 GSLAVNSRISFE---SYFDQIIRKSGD--FDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139 L+ N+ ++ +FD+ + G + + + + +S+ + L+S Sbjct: 22 KGLSDNTLSAYRTDLRHFDRYQAQQGVTLLAVSQADVRAYLAFRVEQDFARTSSARLLSS 81 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195 +R + + V+ + ++ +P VE PK ++ + + S + + + Sbjct: 82 LRRFYTYLVQTKQISADPMALVESPKLTRHLPDSLSESQVDRLLSEPNVEDAVECRDKAM 141 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPD-------GFMKLLAM 247 E L +GLR S+ ++ + ++ K G V L + +MK Sbjct: 142 LELLYATGLRVSELVGLTMEQMSLRQGLVRIVGKGGKERLVPLGELAITEVESYMKFARQ 201 Query: 248 TPIGK---ETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGA 302 +G + F + Q M F K A +AG+ S H +R AT + GA Sbjct: 202 ELLGNKQSDVVFPSKRGQMMTRQTFWHRIKLYALRAGIETALSPHTLRHAFATHLLNHGA 261 Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 + G + + YT A R RL + + Sbjct: 262 DLRVVQLLLGHSDLSTTQIYTHVA-RARLQELHQQ 295 >gi|229545847|ref|ZP_04434572.1| site-specific DNA tyrosine recombinase, XerD [Enterococcus faecalis TX1322] gi|256853102|ref|ZP_05558472.1| phage integrase [Enterococcus faecalis T8] gi|307292019|ref|ZP_07571888.1| tyrosine recombinase XerD [Enterococcus faecalis TX0411] gi|229309046|gb|EEN75033.1| site-specific DNA tyrosine recombinase, XerD [Enterococcus faecalis TX1322] gi|256711561|gb|EEU26599.1| phage integrase [Enterococcus faecalis T8] gi|306497017|gb|EFM66565.1| tyrosine recombinase XerD [Enterococcus faecalis TX0411] gi|315029408|gb|EFT41340.1| tyrosine recombinase XerD [Enterococcus faecalis TX4000] Length = 296 Score = 144 bits (362), Expect = 3e-32, Method: Composition-based stats. Identities = 47/274 (17%), Positives = 107/274 (39%), Gaps = 27/274 (9%) Query: 85 GSLAVNSRISFESYFDQ---IIRKSG----DFDYRKITTKHIRSGVESRKHTPSSAIQFL 137 L+ N+R S+E + +++ G D R + T+ ++S E ++ + +S I+ + Sbjct: 16 RGLSNNTRRSYERDLKKYVAFLQEQGLHSWDEVDRYMITEFLQSLHEEQQAS-ASVIRMI 74 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPR 193 +S+R ++ ++ NP ++ PK+ + + +++ + G + R Sbjct: 75 SSLRGFHQFLRQERLSEHNPMQHIDSPKKIQKLPSTLSVDEVTRLIETPDTSKPLGMRNR 134 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAM----- 247 E + +GLR S+ + L +I ++T K + L D ++ + Sbjct: 135 AILEVMYATGLRVSELIEIKLGDLHLSIGLLQTIGKGDKERIIPLGDYAIQWIERYMNEA 194 Query: 248 ------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299 + F+N+ + ++ K +A + K + H +R AT + Sbjct: 195 RPQLIKNHPNETHLFVNHHGEPLSRQGIWKNLKQIVREAQIEKNITPHTLRHSFATHLLE 254 Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 GA + G + + YT + R+ Sbjct: 255 NGADLRIVQELLGHADISTTQIYTH-ITKQRMAD 287 >gi|258515282|ref|YP_003191504.1| tyrosine recombinase XerD [Desulfotomaculum acetoxidans DSM 771] gi|257778987|gb|ACV62881.1| tyrosine recombinase XerD [Desulfotomaculum acetoxidans DSM 771] Length = 296 Score = 144 bits (362), Expect = 3e-32, Method: Composition-based stats. Identities = 40/264 (15%), Positives = 94/264 (35%), Gaps = 24/264 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH------IRSGVESRKHTPSSAIQFLT 138 LA N+ ++ + D + + ++ + +P++ + L Sbjct: 16 RGLAENTLSAYRMDLQNFLSFCQDKQIKSWSDAGKNTILMYMMFLKQQAMSPATISRRLA 75 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ----QFKSFWSEGSQPRL 194 +++ F++ ++ V +P S+E PK + + +++ Q K G + + Sbjct: 76 ALKSFFRFLTSEQVVEFSPTESMESPKLSQKLPNVLSTSEVELLLMQPKISQPAGIRDKA 135 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------ELPDGFMKLL 245 E L +G+R S+ ++ + I+ G+ + + + K Sbjct: 136 MLELLYATGIRVSELVDLNLEDVSIAEQFIRCYGKGSKERIVPLGSLSASFVEEYLQKGR 195 Query: 246 AMTPIGKET---FFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300 +T F+N+ Q++ F K + ++K + H +R AT + Sbjct: 196 VKLIKKAQTTNALFLNHHGQRLTRQGFWKIIKKYGRQGKIDKPITPHTLRHSFATHLLEN 255 Query: 301 GATAHELMATYGWKTVDQAETYTK 324 GA + G + + YT Sbjct: 256 GADLRSVQEMLGHADISTTQIYTH 279 >gi|163754938|ref|ZP_02162059.1| site-specific recombinase [Kordia algicida OT-1] gi|161325005|gb|EDP96333.1| site-specific recombinase [Kordia algicida OT-1] Length = 298 Score = 144 bits (362), Expect = 3e-32, Method: Composition-based stats. Identities = 48/278 (17%), Positives = 96/278 (34%), Gaps = 27/278 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRK----ITTKHIRSGVESRKH--TPSSAIQFLT 138 L+ N+ +++ +++IR + I ++ + S + ++ Sbjct: 18 RGLSENTIVNYSHDIEKLIRFVENNAINHSPLSIDEATVQQFIYEIAKVLNARSQTRIIS 77 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRL 194 ++ F + V ++Y NP +E PK + +D+++ + EG + + Sbjct: 78 GLKSFFNYLVFEDYRKDNPTELIEAPKIGRKLPDTLALKDIEKLIAAIDLSKNEGHRNKA 137 Query: 195 AFEFLLYSGLRCSDSCRAGVQH--LQNNIFSIKTQKTGTIITVELPDGFMKLLAM----- 247 E L GLR S+ + + T K V + K + + Sbjct: 138 IIETLYGCGLRVSELVNLKISDLFFDEGFIRV-TGKGDKQRFVPISSITKKYINLYIQGQ 196 Query: 248 ------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299 P +T F+N +++ K K+G+ K S H R AT + Sbjct: 197 RQHVPYIPEFGDTVFLNRRGKQLTRVMIFTIVKRLTEKSGLKKNISPHTFRHSFATHLLE 256 Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 GA + G +++ E Y DR L + Sbjct: 257 NGADLRAIQLMLGHESITTTEIYMH-VDRSHLAKVMEK 293 >gi|307692332|ref|ZP_07634569.1| tyrosine recombinase XerD subunit [Ruminococcaceae bacterium D16] Length = 293 Score = 143 bits (361), Expect = 3e-32, Method: Composition-based stats. Identities = 43/277 (15%), Positives = 98/277 (35%), Gaps = 23/277 (8%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVE---SRKH 128 L EY + + N+ S+ Q D + ++ + + V+ + Sbjct: 7 LFEEYLTTE--KKASANTVSSYLRDMHQFETAMAEQDLELTELAVQDVELYVDGLTRKGK 64 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS- 187 + ++ + + S++ + + + NP V K + + + T ++++ F Sbjct: 65 SAATVTRSIASIKSFYNCMIALGIMDRNPAKDVVAAKVERKLPQILTGKEVELFLEQPDC 124 Query: 188 ---EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244 +G + R E L +G+R S+ V L + + G + L ++ Sbjct: 125 SDLKGFRDRAMLELLYATGIRVSELIALDVDDLNLPAGVLHCESKGRERIIPLYHTAIRA 184 Query: 245 LA----------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKF 292 L+ + + F+N ++M+ F K KAG+ K + H +R Sbjct: 185 LSDYITQVRPQLVESPEETALFVNMSGERMSRQGFWKLIKHYQEKAGIQKDITPHTLRHS 244 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 A + GA + G + + Y++ + Sbjct: 245 FAAHLLENGADLRSIQEMLGHADISSTQIYSRLVSQK 281 >gi|237807746|ref|YP_002892186.1| tyrosine recombinase XerD [Tolumonas auensis DSM 9187] gi|237500007|gb|ACQ92600.1| tyrosine recombinase XerD [Tolumonas auensis DSM 9187] Length = 297 Score = 143 bits (361), Expect = 3e-32, Method: Composition-based stats. Identities = 50/290 (17%), Positives = 107/290 (36%), Gaps = 30/290 (10%) Query: 74 LISEYRKSAHWGS--LAVNSRISFESYFDQIIRKSGDFD-----YRKITTKHIRSGVESR 126 LI ++ W L+ N+ S+ + ++ + + + Sbjct: 7 LIEQFL-DMLWLDRGLSDNTISSYRTDLYKLNDWLDSKASSYLTLDTLLLHAYLAWRIDQ 65 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF- 185 +S + L+++R +++ +R++ A +P ++++ PK + ++E ++ + Sbjct: 66 GFKATSTARLLSALRRFYQFLIREQLRADDPTVALDSPKLPLRLPKDISEEQVEALLAEP 125 Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI---------- 232 + + E L +GLR S+ + L +N+ ++ G Sbjct: 126 DVQDPIELRDKAMLELLYATGLRVSELVGLQMHQLASNMAYVRVTGKGNKDRLVPTGEEA 185 Query: 233 ---ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAH 287 I + +G M LL + F +N Q+M F K A +A + + S H Sbjct: 186 QYWIQRFMREGRMTLLHEQAS--DVLFPSNRSQQMTRQTFWHRIKLYAVRANITSDLSPH 243 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 +R AT + GA + G + + YT A + RL + Sbjct: 244 TLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA-QARLQELHQE 292 >gi|198277388|ref|ZP_03209919.1| hypothetical protein BACPLE_03600 [Bacteroides plebeius DSM 17135] gi|198269886|gb|EDY94156.1| hypothetical protein BACPLE_03600 [Bacteroides plebeius DSM 17135] Length = 303 Score = 143 bits (361), Expect = 3e-32, Method: Composition-based stats. Identities = 59/286 (20%), Positives = 115/286 (40%), Gaps = 24/286 (8%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIR---SGVES 125 K +I +YR+ SL+ N+ ++ + D++ + + ++T +++ +G+ Sbjct: 7 KSIIIKYRQYLKLEKSLSANTVEAYLTDLDKLFAFLELESIHFTEVTLENLETFSAGLRD 66 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 P S + L+ +R F++ + ++Y+ +P +E P+ T E++ + Sbjct: 67 IGIHPRSQARILSGIRSFFRFLLLEDYIQQDPSELLESPQIGKHLPDVLTVEEIDRLIGS 126 Query: 186 WS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT-VELPDG 240 EG + R E L GLR S+ C + L IK + G+ V + Sbjct: 127 IDRSTREGQRNRAILETLYSCGLRVSELCNLKLSDLYLKEKFIKVEGKGSKQRLVPISPR 186 Query: 241 FMKLLA----------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHG 288 + L + P ++ FI+ + ++ K A + G+ K S H Sbjct: 187 AIHELELYFPDRNEGLIKPGYEDFVFISRFGKNISRIMVFHIIKELAEQIGLKKTISPHT 246 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIK 334 R AT + GA + G +++ E YT DR RL + Sbjct: 247 FRHSFATHLLEGGANLRAIQCMLGHESIGTTEIYTH-LDRSRLRQE 291 >gi|113969139|ref|YP_732932.1| tyrosine recombinase XerD [Shewanella sp. MR-4] gi|113883823|gb|ABI37875.1| tyrosine recombinase XerD [Shewanella sp. MR-4] Length = 300 Score = 143 bits (361), Expect = 3e-32, Method: Composition-based stats. Identities = 48/288 (16%), Positives = 106/288 (36%), Gaps = 26/288 (9%) Query: 74 LISEYRKSAHW--GSLAVNSRISFE---SYFDQIIRKSGDFDYRKITT--KHIRSGVESR 126 LI + W L+ N+ ++ +FD+ + G + + + + Sbjct: 10 LIDAFLDDL-WSSKGLSDNTLSAYRTDLRHFDRYQQSQGLRLIEVVQADVRAYLAYRVEQ 68 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF- 185 + +S+ + L+S+R + + ++ + +A +P +E PK + ++ + + + Sbjct: 69 QFARTSSARLLSSLRRFYTYLLQTKQIAGDPMALIESPKLSRQLPDSLSESQVDRLLAEP 128 Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGF 241 + + E L +GLR S+ ++ + ++ K G V + + Sbjct: 129 NVDDPVECRDKAMLELLYATGLRVSELVGLTLEQMSLRQGLVRIVGKGGKERLVPMGELA 188 Query: 242 ----------MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGV 289 + + + + F + Q M F K A++AG+ S H + Sbjct: 189 ITEVERYLSSARHELLGNVQSDVVFPSKRSQMMTRQTFWHRIKLYASRAGIETELSPHTL 248 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 R AT + GA + G + + YT A R RL + + Sbjct: 249 RHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVA-RARLQELHQQ 295 >gi|226949108|ref|YP_002804199.1| tyrosine recombinase XerD [Clostridium botulinum A2 str. Kyoto] gi|226843555|gb|ACO86221.1| tyrosine recombinase XerD [Clostridium botulinum A2 str. Kyoto] Length = 291 Score = 143 bits (361), Expect = 3e-32, Method: Composition-based stats. Identities = 43/282 (15%), Positives = 106/282 (37%), Gaps = 21/282 (7%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD-----FDYRKITTKHIRSGVESR 126 K +I Y K +L+ N+ ++ ++ + +T ++ Sbjct: 2 KNIIENYIKDLQKKNLSKNTLEAYRRDVEKFSEFVRNREEKILSVDTVTIMAFVQYLQRE 61 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 SS ++ + S+R +K+ +++ V+ +P L E PK + + + E++ + + Sbjct: 62 GRATSSIVRNIVSIRNFYKYLIKKNMVSEDPTLGYEIPKIERTIPKILSVEEVDKLLNSP 121 Query: 187 S---EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG--- 240 +G + + E + +G++ ++ + + IK + + + +P G Sbjct: 122 DSSKKGLRDKAMLELMYATGVKITELLNLNIYDINLKFNYIKCRGSKKRERI-IPIGSYA 180 Query: 241 ---FMKLLAMTPIGK----ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRK 291 L + P + F+N +M F K A +A ++K ++ +R Sbjct: 181 IKCLKNYLEVRPAINVYNLDYLFLNLKGTQMTRQGFWKIIKFYAKEASIDKEIDSYTLRH 240 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 A GA + G K + + Y+ + + ++ Sbjct: 241 SFAVHLLQNGADIKSVQELLGHKDLAATQIYSSISKKSKIAE 282 >gi|149181661|ref|ZP_01860154.1| site-specific tyrosine recombinase XerD [Bacillus sp. SG-1] gi|148850639|gb|EDL64796.1| site-specific tyrosine recombinase XerD [Bacillus sp. SG-1] Length = 297 Score = 143 bits (361), Expect = 3e-32, Method: Composition-based stats. Identities = 38/257 (14%), Positives = 95/257 (36%), Gaps = 21/257 (8%) Query: 89 VNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI---QFLTSMRVLFK 145 + + ++Y I + + +I + K+ SA + + S+R + Sbjct: 24 DSYQRDLKNYMKFIQNVDSAESWNDVQRVNITGFLGHLKNEGKSAKTVARHVASIRSFHQ 83 Query: 146 WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRLAFEFLLY 201 + +R++ +P + +E PK + + + ++++ + G + + E L Sbjct: 84 FLLREKVTDQDPSIHIESPKMERSLPKVLSIDEVEALLEAPQESSALGIRDKAMLEVLYA 143 Query: 202 SGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAM-----------TP 249 +G+R S+ R + + + ++ K + + + +L Sbjct: 144 TGIRVSELIRLKMDDVHLKMGFVRCIGKGNKERIIPIGKAAITVLEKYLLEGRPKLVSKK 203 Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHEL 307 ++ F+N+ + ++ F K A +A + K + H +R AT + GA + Sbjct: 204 HKDDSLFLNHHGKGLSRQGFWKILKGLAAEAKITKELTPHTLRHSFATHLLENGADLRAV 263 Query: 308 MATYGWKTVDQAETYTK 324 G + + YT Sbjct: 264 QEMLGHVDISTTQIYTH 280 >gi|22127152|ref|NP_670575.1| site-specific tyrosine recombinase XerD [Yersinia pestis KIM 10] gi|45443323|ref|NP_994862.1| site-specific tyrosine recombinase XerD [Yersinia pestis biovar Microtus str. 91001] gi|51597478|ref|YP_071669.1| site-specific tyrosine recombinase XerD [Yersinia pseudotuberculosis IP 32953] gi|108806374|ref|YP_650290.1| site-specific tyrosine recombinase XerD [Yersinia pestis Antiqua] gi|108813251|ref|YP_649018.1| site-specific tyrosine recombinase XerD [Yersinia pestis Nepal516] gi|145597930|ref|YP_001162006.1| site-specific tyrosine recombinase XerD [Yersinia pestis Pestoides F] gi|150260097|ref|ZP_01916825.1| integrase/recombinase [Yersinia pestis CA88-4125] gi|153948372|ref|YP_001399863.1| site-specific tyrosine recombinase XerD [Yersinia pseudotuberculosis IP 31758] gi|162418404|ref|YP_001608154.1| site-specific tyrosine recombinase XerD [Yersinia pestis Angola] gi|165924857|ref|ZP_02220689.1| tyrosine recombinase XerD [Yersinia pestis biovar Orientalis str. F1991016] gi|165937373|ref|ZP_02225937.1| tyrosine recombinase XerD [Yersinia pestis biovar Orientalis str. IP275] gi|166010314|ref|ZP_02231212.1| tyrosine recombinase XerD [Yersinia pestis biovar Antiqua str. E1979001] gi|166212682|ref|ZP_02238717.1| tyrosine recombinase XerD [Yersinia pestis biovar Antiqua str. B42003004] gi|167399752|ref|ZP_02305270.1| tyrosine recombinase XerD [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167418760|ref|ZP_02310513.1| tyrosine recombinase XerD [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167425367|ref|ZP_02317120.1| tyrosine recombinase XerD [Yersinia pestis biovar Mediaevalis str. K1973002] gi|170023169|ref|YP_001719674.1| site-specific tyrosine recombinase XerD [Yersinia pseudotuberculosis YPIII] gi|186896598|ref|YP_001873710.1| site-specific tyrosine recombinase XerD [Yersinia pseudotuberculosis PB1/+] gi|218928065|ref|YP_002345940.1| site-specific tyrosine recombinase XerD [Yersinia pestis CO92] gi|229837578|ref|ZP_04457740.1| site-specific tyrosine recombinase [Yersinia pestis Pestoides A] gi|229840801|ref|ZP_04460960.1| site-specific tyrosine recombinase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229842640|ref|ZP_04462795.1| site-specific tyrosine recombinase [Yersinia pestis biovar Orientalis str. India 195] gi|229903707|ref|ZP_04518820.1| site-specific tyrosine recombinase [Yersinia pestis Nepal516] gi|270487486|ref|ZP_06204560.1| tyrosine recombinase XerD [Yersinia pestis KIM D27] gi|294502941|ref|YP_003567003.1| tyrosine recombinase [Yersinia pestis Z176003] gi|34222946|sp|Q8ZHK1|XERD_YERPE RecName: Full=Tyrosine recombinase xerD gi|21960213|gb|AAM86826.1|AE013928_11 site-specific recombinase [Yersinia pestis KIM 10] gi|45438192|gb|AAS63739.1| integrase/recombinase [Yersinia pestis biovar Microtus str. 91001] gi|51590760|emb|CAH22405.1| Probable site-specific integrase/recombinase [Yersinia pseudotuberculosis IP 32953] gi|108776899|gb|ABG19418.1| tyrosine recombinase XerD subunit [Yersinia pestis Nepal516] gi|108778287|gb|ABG12345.1| tyrosine recombinase XerD subunit [Yersinia pestis Antiqua] gi|115346676|emb|CAL19559.1| integrase/recombinase [Yersinia pestis CO92] gi|145209626|gb|ABP39033.1| tyrosine recombinase XerD subunit [Yersinia pestis Pestoides F] gi|149289505|gb|EDM39582.1| integrase/recombinase [Yersinia pestis CA88-4125] gi|152959867|gb|ABS47328.1| tyrosine recombinase XerD [Yersinia pseudotuberculosis IP 31758] gi|162351219|gb|ABX85167.1| tyrosine recombinase XerD [Yersinia pestis Angola] gi|165914847|gb|EDR33460.1| tyrosine recombinase XerD [Yersinia pestis biovar Orientalis str. IP275] gi|165923057|gb|EDR40208.1| tyrosine recombinase XerD [Yersinia pestis biovar Orientalis str. F1991016] gi|165990800|gb|EDR43101.1| tyrosine recombinase XerD [Yersinia pestis biovar Antiqua str. E1979001] gi|166205974|gb|EDR50454.1| tyrosine recombinase XerD [Yersinia pestis biovar Antiqua str. B42003004] gi|166962754|gb|EDR58775.1| tyrosine recombinase XerD [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167050460|gb|EDR61868.1| tyrosine recombinase XerD [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167055767|gb|EDR65551.1| tyrosine recombinase XerD [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169749703|gb|ACA67221.1| tyrosine recombinase XerD [Yersinia pseudotuberculosis YPIII] gi|186699624|gb|ACC90253.1| tyrosine recombinase XerD [Yersinia pseudotuberculosis PB1/+] gi|229679477|gb|EEO75580.1| site-specific tyrosine recombinase [Yersinia pestis Nepal516] gi|229690950|gb|EEO83004.1| site-specific tyrosine recombinase [Yersinia pestis biovar Orientalis str. India 195] gi|229697167|gb|EEO87214.1| site-specific tyrosine recombinase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229704266|gb|EEO91277.1| site-specific tyrosine recombinase [Yersinia pestis Pestoides A] gi|262360976|gb|ACY57697.1| tyrosine recombinase [Yersinia pestis D106004] gi|262364916|gb|ACY61473.1| tyrosine recombinase [Yersinia pestis D182038] gi|270335990|gb|EFA46767.1| tyrosine recombinase XerD [Yersinia pestis KIM D27] gi|294353400|gb|ADE63741.1| tyrosine recombinase [Yersinia pestis Z176003] gi|320014032|gb|ADV97603.1| site-specific tyrosine recombinase [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 299 Score = 143 bits (361), Expect = 3e-32, Method: Composition-based stats. Identities = 53/283 (18%), Positives = 108/283 (38%), Gaps = 27/283 (9%) Query: 74 LISEYRKSAHW--GSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGVESR--- 126 LI ++ A W +LA N+ S+ ++ + D + + + ++S + R Sbjct: 8 LIEQFL-DALWLERNLAENTLASYRLDLHALVGWLTHHNSDLLRASPQDLQSFLAERIEG 66 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF- 185 + +S+ + L++MR LF++ R++ +P + PK + ++ + + Sbjct: 67 GYKATSSARLLSAMRRLFQYLYREKLREDDPTALLSSPKLPQRLPKDLSEAQVDALLNSP 126 Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG- 240 + + E L +GLR S+ + + ++ K V L + Sbjct: 127 NVDIPLELRDKAMLEVLYATGLRVSELVGLTISDVSLRQGVVRVIGKGNKERLVPLGEEA 186 Query: 241 ------FMKLLAMTPIGK---ETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHG 288 +M+ + + F +N Q+M F K A AG++ S H Sbjct: 187 VYWIENYMEHGRPWLVNGASLDVLFPSNRSQQMTRQTFWHRIKHYAILAGIDSERLSPHV 246 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIR 330 +R AT + GA + G + + YT A +R+R Sbjct: 247 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLR 289 >gi|295108294|emb|CBL22247.1| tyrosine recombinase XerD subunit [Ruminococcus obeum A2-162] Length = 294 Score = 143 bits (361), Expect = 3e-32, Method: Composition-based stats. Identities = 39/262 (14%), Positives = 92/262 (35%), Gaps = 22/262 (8%) Query: 83 HWGSLAVNSRISFESYFDQIIRKSGDFDYRKI------TTKHIRSGVESRKHTPSSAIQF 136 + + N+ +S+E ++IR + D + + ++S S+ + Sbjct: 14 ETKNTSKNTEVSYERDLKKLIRYLQEQDLTSFSEVTCTDLQGYLNKIKSENLAASTISRN 73 Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS----FWSEGSQP 192 + S+R L+ + +++ VA +P + PK + + + E++ + +G + Sbjct: 74 IASIRALYHYLLKKGIVAEDPTEVLHTPKIEKKLPEILSVEEVDRLLKQPDIRTPKGIRD 133 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD-------GFMKLL 245 E L +G+R S+ + + + + + + + +M+ Sbjct: 134 NAMMELLYATGMRVSELIHLSTTDINLQMGYVVCHDSDKERIIPIGNVSRNAILQYMEHS 193 Query: 246 AMTPIGK---ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300 F N + M+ F K A AG+++ + H +R A Sbjct: 194 RGFFTKDTNESALFTNCSGKSMSRQGFWKVLKGYAADAGIHRDITPHTLRHSFAAHMLQN 253 Query: 301 GATAHELMATYGWKTVDQAETY 322 GA + G + + Y Sbjct: 254 GADVKSVQEMLGHADISSTQIY 275 >gi|271499210|ref|YP_003332235.1| tyrosine recombinase XerD [Dickeya dadantii Ech586] gi|270342765|gb|ACZ75530.1| tyrosine recombinase XerD [Dickeya dadantii Ech586] Length = 299 Score = 143 bits (361), Expect = 3e-32, Method: Composition-based stats. Identities = 50/280 (17%), Positives = 102/280 (36%), Gaps = 26/280 (9%) Query: 72 KWLISEYRKSAHW--GSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGVESR- 126 + LI ++ A W +LA N+ S+ + + D + ++ + R Sbjct: 6 QALIEQFL-DALWLERNLAENTLSSYRNDLSSLAEWLAHHDRHLLEAQPSDLQDFLAERL 64 Query: 127 --KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 + +S+ + L++MR LF++ R++ +P + PK + T+ ++ + Sbjct: 65 EGGYKATSSARLLSAMRRLFQYLYREKRRTDDPSAPLSSPKLPQRLPKDLTEAQVEALLA 124 Query: 185 F----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT------ 234 + + E L +GLR S+ + + ++ G Sbjct: 125 APVTDQPIELRDKAMLELLYATGLRVSELVGLTMSDVSLRQGVVRVVGKGNKERLVPLGE 184 Query: 235 --VELPDGFMKLLAMTPIGKETF---FINNDKQKMNATQFSIWFKAKATKAGVN---KSA 286 V + +++ + +T F +N Q+M F K AT A ++ S Sbjct: 185 EAVYWLEQYLEYSRPWLLNGQTLDVLFPSNRAQQMTRQTFWHRIKHYATLASIDSNKLSP 244 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 H +R AT + GA + G + + YT A Sbjct: 245 HVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA 284 >gi|317493832|ref|ZP_07952249.1| tyrosine recombinase XerD [Enterobacteriaceae bacterium 9_2_54FAA] gi|316918159|gb|EFV39501.1| tyrosine recombinase XerD [Enterobacteriaceae bacterium 9_2_54FAA] Length = 299 Score = 143 bits (361), Expect = 3e-32, Method: Composition-based stats. Identities = 50/280 (17%), Positives = 102/280 (36%), Gaps = 26/280 (9%) Query: 72 KWLISEYRKSAHW--GSLAVNSRISFESYF----DQIIRKSGDFDYRKITT-KHIRSGVE 124 + LI ++ A W +LA N+ S+ + + D +++ + + Sbjct: 6 QALIEQFL-DALWLERNLAENTLASYRLDLRSLAEWLAHHHSDLLLAQVSDLQDFLAERV 64 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 + +S+ + L++MR LF++ R++ + +P + PK + T+ + Sbjct: 65 DGGYKATSSARLLSAMRRLFQYFYREKMRSDDPTTLLSSPKLPQRLPKDLTEAQVDTLLQ 124 Query: 185 FW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPD 239 + + E L +GLR S+ + + ++ K V L + Sbjct: 125 TPCIENPIELRDKAMLEVLYATGLRVSELVGLTLADVSLRQGVVRVIGKGNKERLVPLGE 184 Query: 240 G-------FMKLLAMTPIGKETF---FINNDKQKMNATQFSIWFKAKATKAGVN---KSA 286 +++ + +T F +N Q+M F K A AG++ S Sbjct: 185 EAVYWIEYYLEYGRPWLLNGQTIDVLFPSNRTQQMTRQTFWHRIKHYAVLAGIDSSRLSP 244 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 H +R AT + GA + G + + YT A Sbjct: 245 HVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA 284 >gi|153939513|ref|YP_001391125.1| tyrosine recombinase XerD [Clostridium botulinum F str. Langeland] gi|170757059|ref|YP_001781413.1| tyrosine recombinase XerD [Clostridium botulinum B1 str. Okra] gi|152935409|gb|ABS40907.1| tyrosine recombinase XerD [Clostridium botulinum F str. Langeland] gi|169122271|gb|ACA46107.1| tyrosine recombinase XerD [Clostridium botulinum B1 str. Okra] gi|295319169|gb|ADF99546.1| tyrosine recombinase XerD [Clostridium botulinum F str. 230613] Length = 291 Score = 143 bits (361), Expect = 3e-32, Method: Composition-based stats. Identities = 43/282 (15%), Positives = 106/282 (37%), Gaps = 21/282 (7%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD-----FDYRKITTKHIRSGVESR 126 K +I Y K +L+ N+ ++ ++ + +T ++ Sbjct: 2 KNIIENYIKDLQKKNLSKNTLEAYRRDVEKFSEFVRNREEKILSVDTVTIMAFVQYLQRE 61 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 SS ++ + S+R +K+ +++ V+ +P L E PK + + + E++ + + Sbjct: 62 GRATSSIVRNIVSIRNFYKYLIKKNMVSEDPTLGYEIPKIERTIPKILSVEEVDKLLNSP 121 Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG--- 240 +G + + E + +G++ ++ + + IK + + + +P G Sbjct: 122 NSSKKGLRDKAMLELMYATGVKITELLNLNIYDINLKFNYIKCRGSKKRERI-IPIGSYA 180 Query: 241 ---FMKLLAMTPIGK----ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRK 291 L + P + F+N +M F K A +A ++K ++ +R Sbjct: 181 IKCLKNYLEVRPAINVYNLDYLFLNLKGTQMTRQGFWKIIKFYAKEASIDKEIDSYTLRH 240 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 A GA + G K + + Y+ + + ++ Sbjct: 241 SFAVHLLQNGADIKSVQELLGHKDLAATQIYSSISKKSKIAE 282 >gi|150009884|ref|YP_001304627.1| tyrosine type site-specific recombinase [Parabacteroides distasonis ATCC 8503] gi|256838407|ref|ZP_05543917.1| tyrosine recombinase XerD [Parabacteroides sp. D13] gi|262382840|ref|ZP_06075977.1| tyrosine recombinase XerD [Bacteroides sp. 2_1_33B] gi|298374238|ref|ZP_06984196.1| tyrosine recombinase XerD [Bacteroides sp. 3_1_19] gi|301312384|ref|ZP_07218300.1| tyrosine recombinase XerD [Bacteroides sp. 20_3] gi|149938308|gb|ABR45005.1| tyrosine type site-specific recombinase [Parabacteroides distasonis ATCC 8503] gi|256739326|gb|EEU52650.1| tyrosine recombinase XerD [Parabacteroides sp. D13] gi|262295718|gb|EEY83649.1| tyrosine recombinase XerD [Bacteroides sp. 2_1_33B] gi|298268606|gb|EFI10261.1| tyrosine recombinase XerD [Bacteroides sp. 3_1_19] gi|300829567|gb|EFK60221.1| tyrosine recombinase XerD [Bacteroides sp. 20_3] Length = 301 Score = 143 bits (361), Expect = 3e-32, Method: Composition-based stats. Identities = 48/276 (17%), Positives = 104/276 (37%), Gaps = 23/276 (8%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESRKH 128 K +I+ Y SL+ NS ++ + D+++R + D D ++I+ ++ + + Sbjct: 5 KDIINRYNTYLRLEKSLSANSIDAYLTDLDKLLRFAEDEKKDVKEISYDDLQQFIAQLRD 64 Query: 129 ---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 P S + ++ ++ +++ + Y+ +P +E PK + T ++ Sbjct: 65 IGIHPRSQARIISGIKSFYRFLLLDNYITNDPTELLESPKIGLKLPEVLTVNEINSILDT 124 Query: 186 ----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT-VELPDG 240 EG + R E L GLR S+ + I+ + G+ V + + Sbjct: 125 IDLTLPEGQRNRAMLEVLYSCGLRVSELTGLRYSDIYPKEGFIRVEGKGSKQRLVPISEV 184 Query: 241 FMKLLAMTPIGKET----------FFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHG 288 ++ + + + F++ ++ K + AG++K S H Sbjct: 185 ALREIKNYLYDRNSVVVKKGFEDILFLSRRGTALSRIMVFHIIKQQTEAAGIHKNVSPHT 244 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 R AT + GA + G + + E YT Sbjct: 245 FRHSFATHLLEGGANLRAIQEMLGHEKITTTEIYTH 280 >gi|251790996|ref|YP_003005717.1| tyrosine recombinase XerD [Dickeya zeae Ech1591] gi|247539617|gb|ACT08238.1| tyrosine recombinase XerD [Dickeya zeae Ech1591] Length = 299 Score = 143 bits (361), Expect = 3e-32, Method: Composition-based stats. Identities = 49/278 (17%), Positives = 100/278 (35%), Gaps = 26/278 (9%) Query: 74 LISEYRKSAHW--GSLAVNSRISFESYFDQIIRKSGD-----FDYRKITTKHIRSGVESR 126 LI ++ A W +LA N+ S+ + + + + + + Sbjct: 8 LIEQFL-DALWLERNLAENTLSSYRNDLCSLAEWLAHHNSDLLQAQPLDLQGFLAERLEG 66 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF- 185 + +S+ + L++MR LF++ R++ A +P + PK + T+ ++ + Sbjct: 67 GYKATSSARLLSAMRRLFQYLYREKRRADDPSAPLSSPKLPQRLPKDLTEAQVEALLAAP 126 Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT-------- 234 + + E L +GLR S+ + + ++ G Sbjct: 127 VTDQPIELRDKAMLELLYATGLRVSELVGLTISDVSLRQGVVRVVGKGNKERLVPLGEEA 186 Query: 235 VELPDGFMKLLAMTPIGKETF---FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHG 288 V + +++ + +T F +N Q+M F K AT A ++ S H Sbjct: 187 VYWLEQYLEFSRPWLLNGQTLDVLFPSNRAQQMTRQTFWHRIKHYATLASIDSNKLSPHV 246 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 +R AT + GA + G + + YT A Sbjct: 247 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA 284 >gi|145636556|ref|ZP_01792224.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae PittHH] gi|145270381|gb|EDK10316.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae PittHH] Length = 297 Score = 143 bits (361), Expect = 3e-32, Method: Composition-based stats. Identities = 46/284 (16%), Positives = 96/284 (33%), Gaps = 27/284 (9%) Query: 73 WLISEYRKSAHW--GSLAVNSRISFESYFDQIIRKSGDFDYR-----KITTKHIRSGVES 125 LI + W L+ N+ S+ + D + + Sbjct: 5 ALIDLFLNEY-WIEKGLSENTVQSYRLDLTALCDWLDKNDLSLETLDAVDLQGFLGERLE 63 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS- 184 + + +S + L++MR LF++ R++Y +P + PK + + T++ + + Sbjct: 64 KGYKATSTARMLSAMRKLFQYLYREKYRVDDPSAVLSSPKLPSRLPKYLTEQQVSDLLNT 123 Query: 185 ---FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG 240 + + E L +GLR ++ ++++ ++ K V + + Sbjct: 124 PDVEVPLELRDKAMLELLYATGLRVTELVSLTIENMSVQQGVVRVIGKGNKERIVPMGEE 183 Query: 241 FMKLLAMTPIGKETFFIN----------NDKQKMNATQFSIWFKAKATKAGVNK---SAH 287 + + +N Q+M F K A A ++ S H Sbjct: 184 AAYWVRQFILYGRPVLLNGQSSDVVFPSQRAQQMTRQTFWHRVKHYAILADIDADTLSPH 243 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 +R AT + GA + G + + YT A + RL Sbjct: 244 VLRHAFATHLVNHGADLRVVQMLLGHTDLSTTQIYTHVA-KERL 286 >gi|229174766|ref|ZP_04302290.1| Tyrosine recombinase xerD [Bacillus cereus MM3] gi|228608756|gb|EEK66054.1| Tyrosine recombinase xerD [Bacillus cereus MM3] Length = 296 Score = 143 bits (361), Expect = 4e-32, Method: Composition-based stats. Identities = 44/271 (16%), Positives = 104/271 (38%), Gaps = 25/271 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGVESRKHTPSSAI---QFL 137 LA N+ +S+E ++ + + ++T HI + ++ K S+ + + Sbjct: 16 KGLAKNTVVSYERDLKSYVKYLQNVEQAKSFHEVTRLHIVNFLQHLKENGKSSKTLARHI 75 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPR 193 S+R ++ +R+ V +P + +E P+ + + + + ++++ G + + Sbjct: 76 ASIRSFHQFLLRERAVEHDPSVHIETPQGERKLPKVLSIDEVEALLQTPKMTSAFGVRDK 135 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGK 252 E L +GLR S+ ++ + + ++ K + L + + Sbjct: 136 AMLELLYATGLRVSELIALNLEDVHLTMGFVRCIGKGNKERIIPLGSLATEAIQKYIEKG 195 Query: 253 ----------ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300 + F+N+ +++ F K A +A + K + H +R AT + Sbjct: 196 RRELMGKKVVDALFLNHHGNRLSRQGFWKILKRLAKEANIEKELTPHTLRHSFATHLLEN 255 Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRL 331 GA + G + + YT + RL Sbjct: 256 GADLRAVQEMLGHADISTTQIYTH-VSKARL 285 >gi|16272264|ref|NP_438476.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae Rd KW20] gi|260581222|ref|ZP_05849041.1| tyrosine recombinase XerD [Haemophilus influenzae RdAW] gi|1175025|sp|P44630|XERD_HAEIN RecName: Full=Tyrosine recombinase xerD gi|1573278|gb|AAC21974.1| integrase/recombinase (xerD) [Haemophilus influenzae Rd KW20] gi|260092147|gb|EEW76091.1| tyrosine recombinase XerD [Haemophilus influenzae RdAW] Length = 297 Score = 143 bits (361), Expect = 4e-32, Method: Composition-based stats. Identities = 48/284 (16%), Positives = 98/284 (34%), Gaps = 27/284 (9%) Query: 73 WLISEYRKSAHW--GSLAVNSRISFESYFDQIIRKSGDFDYR-----KITTKHIRSGVES 125 LI + W L+ N+ S+ + D + + Sbjct: 5 ALIDLFLNEY-WIEKGLSENTVQSYRLDLTALCDWLDKNDLSLETLDAVDLQGFLGERLE 63 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS- 184 + + +S + L++MR LF++ R++Y +P + PK + + T++ + + Sbjct: 64 KGYKATSTARMLSAMRKLFQYLYREKYRVDDPSAVLSSPKLPSRLPKYLTEQQVSDLLNT 123 Query: 185 ---FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG 240 + + E L +GLR ++ ++++ ++ K V + + Sbjct: 124 PNVEVPLELRDKAMLELLYATGLRVTELVSLTIENMSVQQGVVRVIGKGNKERIVPMGEE 183 Query: 241 FMKL-----LAMTPI-----GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAH 287 L P+ + F + Q+M F K A A ++ S H Sbjct: 184 AAYWVRQFMLYGRPVLLNGQSSDVVFPSQRAQQMTRQTFWHRVKHYAILADIDADALSPH 243 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 +R AT + GA + G + + YT A + RL Sbjct: 244 VLRHAFATHLVNHGADLRVVQMLLGHTDLSTTQIYTHVA-KERL 286 >gi|172057038|ref|YP_001813498.1| tyrosine recombinase XerD [Exiguobacterium sibiricum 255-15] gi|171989559|gb|ACB60481.1| tyrosine recombinase XerD [Exiguobacterium sibiricum 255-15] Length = 294 Score = 143 bits (361), Expect = 4e-32, Method: Composition-based stats. Identities = 47/269 (17%), Positives = 110/269 (40%), Gaps = 23/269 (8%) Query: 85 GSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFLT 138 ++ N+ ++ + +Q + + G ++T HI +ES + + ++ + + Sbjct: 16 RQMSANTAAAYRNDLNQYLTTLEQQGISSAEEVTRHHIVLHIESLLQAQKSRATVRRSTS 75 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS----FWSEGSQPRL 194 S+R ++ V ++ V +P ++ PK + W++ D+ + + Sbjct: 76 SIRSFHQFLVERQIVRHDPSRHLDLPKPDKKLPVVWSQTDIVRLLDSVVGNDPLVRRDAA 135 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-ELPDG-------FMKLLA 246 E L +G+R S+ + + LQ + + G + + +++L Sbjct: 136 MLELLYGTGMRVSELLQLTLSDLQLELGYLSCLGKGNKTRIIPISQTAIDSVSVYLELAR 195 Query: 247 MTPIGKET--FFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302 + G++T F+N+ +++ F K +A +AG+ K + H +R AT + GA Sbjct: 196 NSLGGRQTDYVFLNSRGDRLSRQGFWKMIKRRAKEAGIEKDITPHVLRHSFATHLLENGA 255 Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRL 331 + G + + YT ++ RL Sbjct: 256 DLRVVQEMLGHADLSTTQMYTH-VNKARL 283 >gi|78067360|ref|YP_370129.1| site-specific tyrosine recombinase XerD [Burkholderia sp. 383] gi|77968105|gb|ABB09485.1| Tyrosine recombinase XerD [Burkholderia sp. 383] Length = 316 Score = 143 bits (361), Expect = 4e-32, Method: Composition-based stats. Identities = 50/268 (18%), Positives = 92/268 (34%), Gaps = 22/268 (8%) Query: 85 GSLAVNSRISFES---YFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSSAIQFLTSM 140 LA N+ ++ F Q + ++ D + + + +R +S+ + L+ Sbjct: 39 HGLARNTLDAYRRDLVLFSQWLAETHDAPLDSVDEAMVTGYIAARSDGKATSSNRRLSVF 98 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLAF 196 R + WAVR+ V+ +P L + K+ ++ ++ G+ + R Sbjct: 99 RRYYGWAVREHRVSADPTLRITSAKQAARFPSTLSEAQVEALLGAPDIGTPLGLRDRTML 158 Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------ELPDGFMKLLAM 247 E + SGLR S+ + N ++ G+ + + Sbjct: 159 ELMYASGLRVSELVMLKTVEVGLNEGVVRVMGKGSKERLVPFGEVAHGWIERYLRDARPA 218 Query: 248 T--PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGAT 303 + F+ M QF K A A V + S H +R AT + GA Sbjct: 219 LLGARAADALFVTARGDGMTRQQFWNIIKRHAQHAEVRAHLSPHTLRHAFATHLLNHGAD 278 Query: 304 AHELMATYGWKTVDQAETYTKGADRIRL 331 + G + + YT A R RL Sbjct: 279 LRVVQLLLGHSDISTTQIYTHVA-RERL 305 >gi|293391879|ref|ZP_06636213.1| tyrosine recombinase XerD [Aggregatibacter actinomycetemcomitans D7S-1] gi|290952413|gb|EFE02532.1| tyrosine recombinase XerD [Aggregatibacter actinomycetemcomitans D7S-1] Length = 297 Score = 143 bits (361), Expect = 4e-32, Method: Composition-based stats. Identities = 40/268 (14%), Positives = 87/268 (32%), Gaps = 23/268 (8%) Query: 85 GSLAVNSRISFESYFDQII-----RKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139 L+ N+ S+ + R + + + + +S + L++ Sbjct: 18 KGLSPNTVASYRLDLTALCDWLEARHLSLLSLDAVDLQTFLGERVEQDYKATSTARLLSA 77 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRLA 195 +R LF++ +++Y +P + PK + T++ + + + + Sbjct: 78 IRKLFQYLYQEKYRTDDPSAVLSSPKLPNRLPKYLTEQQVTDLLNVQSLEQPIELRDKAM 137 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLA-----MTP 249 E L +GLR ++ + N ++ K V + + + P Sbjct: 138 LELLYATGLRVTELVSLNTNSINLNQGVVRVIGKGKKERIVPMGEEATHWVKQFMLFARP 197 Query: 250 I-----GKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAG 301 + + F + +M F K A A ++ S H +R AT + G Sbjct: 198 MLLGGQSSDVLFPSRRGTQMTRQTFWHRIKHYAVLAEIDSEMLSPHVLRHAFATHLVNHG 257 Query: 302 ATAHELMATYGWKTVDQAETYTKGADRI 329 A + G + + YT A Sbjct: 258 ADLRVVQMLLGHSDLSTTQIYTHVAKER 285 >gi|217974605|ref|YP_002359356.1| tyrosine recombinase XerD [Shewanella baltica OS223] gi|217499740|gb|ACK47933.1| tyrosine recombinase XerD [Shewanella baltica OS223] Length = 300 Score = 143 bits (361), Expect = 4e-32, Method: Composition-based stats. Identities = 49/277 (17%), Positives = 96/277 (34%), Gaps = 27/277 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKI-----TTKHIRSGVESRKHTPSSAIQFLTS 139 L+ N+ ++ + R G + + + + +S+ + L+S Sbjct: 22 KGLSDNTLSAYRTDLRHFDRYQGQQGVTLLAVSQADVRAYLAFRVEQDFARTSSARLLSS 81 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195 +R + + V+ + + +P VE PK ++ + + S + + + Sbjct: 82 LRRFYTYLVQTKQILADPMALVESPKLTRHLPDSLSESQVDRLLSEPNVEDAVECRDKAM 141 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPD------------GFM 242 E L +GLR S+ ++ + ++ K G V L + Sbjct: 142 LELLYATGLRVSELVGLTMEQMSLRQGLVRIVGKGGKERLVPLGELAITEVENYMKFARQ 201 Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADA 300 +LL + F + Q M F K A +AG+ S H +R AT + Sbjct: 202 ELLGNK--QSDVVFPSKRGQMMTRQTFWHRIKLYALRAGIETALSPHTLRHAFATHLLNH 259 Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 GA + G + + YT A R RL + + Sbjct: 260 GADLRVVQLLLGHSDLSTTQIYTHVA-RARLQELHQQ 295 >gi|253700949|ref|YP_003022138.1| tyrosine recombinase XerD [Geobacter sp. M21] gi|251775799|gb|ACT18380.1| tyrosine recombinase XerD [Geobacter sp. M21] Length = 292 Score = 143 bits (361), Expect = 4e-32, Method: Composition-based stats. Identities = 49/267 (18%), Positives = 97/267 (36%), Gaps = 21/267 (7%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH---TPSSAIQFLTSMR 141 A N+ ++ ++ + G+ + I + + K P S + L+++R Sbjct: 16 KGAAANTVAAYSRDLNRYLLFLGEREPDGIRPIDVTGFLAKLKGEGIAPRSRARALSALR 75 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-WSEGS---QPRLAFE 197 +L ++ +R+ Y +NP VE PK + + +++ S G+ + + E Sbjct: 76 MLHRFLLREGYCELNPTAIVEAPKGVRKLPAVLSGREVEALLSSPHDTGAQELRDKAMLE 135 Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAM--------- 247 L +GLR S+ + + + + T K V + + + Sbjct: 136 LLYATGLRVSELVGLKLGEVNLSAGYLMTIGKGDKERLVPIGESACRATGAYLQKARGEL 195 Query: 248 -TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATA 304 F++ M+ F K +A +AGV S H +R AT + GA Sbjct: 196 LKGKASPLLFLSRLGGGMSRQAFWNIIKKRALQAGVRASISPHTLRHSFATHLLENGADL 255 Query: 305 HELMATYGWKTVDQAETYTKGADRIRL 331 + G + + YT R R+ Sbjct: 256 RSVQIMLGHADLSSTQIYTH-VTRERM 281 >gi|225174860|ref|ZP_03728857.1| tyrosine recombinase XerD [Dethiobacter alkaliphilus AHT 1] gi|225169500|gb|EEG78297.1| tyrosine recombinase XerD [Dethiobacter alkaliphilus AHT 1] Length = 295 Score = 143 bits (361), Expect = 4e-32, Method: Composition-based stats. Identities = 51/281 (18%), Positives = 107/281 (38%), Gaps = 30/281 (10%) Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSGVES 125 TL+ I S LA N+ S+ ++++G + + +I + S Sbjct: 3 RTLRDFIH--YLSVE-KGLAKNTLESYNRDLRTYYTYLKQNGITSLEETSRSNIVGYLLS 59 Query: 126 RKHTPSSAIQF---LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 ++ + + S+R + + ++ ++ NP +E PK + + R T ++M Sbjct: 60 LQNMGKATSTLSRNMASIRSFYNYLFQERHLVENPAAELESPKLEKKLPRVLTPQEMDLL 119 Query: 183 KSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV--- 235 + G + + E + +G+R S+ + + + I+ G+ + Sbjct: 120 LEQPDQTQVTGIRDKAMLEVIYATGIRVSELMSLDIGDVNLDAGFIRCLGKGSKERIIPL 179 Query: 236 ----------ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284 L +G KL+ G+ + F+N ++ F K AT+AG+ K Sbjct: 180 GSVAIRNVGRYLNEGRPKLVRQA--GEASLFVNQHGNRLTRQGFWKILKKYATRAGITKE 237 Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 + H +R AT + GA + G + + YT+ Sbjct: 238 ITPHTMRHSFATHLLENGADLRSVQEMLGHADISTTQIYTQ 278 >gi|258593730|emb|CBE70071.1| Tyrosine recombinase xerD [NC10 bacterium 'Dutch sediment'] Length = 295 Score = 143 bits (360), Expect = 4e-32, Method: Composition-based stats. Identities = 47/277 (16%), Positives = 102/277 (36%), Gaps = 24/277 (8%) Query: 72 KWLISEYRKSAH-WGSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSGVESRK 127 LI +Y + LA NS ++ +I ++ G +R+++ + + + + Sbjct: 2 DNLIEDYLRYLAVEKGLAENSLAAYGRDLRRIVGYFKQGGVGSFREVSRGQVARLLLTLR 61 Query: 128 HT---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 P + + +S+R L+++ + Q++V +P +E ++E++++ + Sbjct: 62 EAGLAPRTVSRHTSSLRGLYRYLLTQDHVKEDPTAHLESSSPWVRLPGVLSQEEVERLLA 121 Query: 185 FW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPD 239 G + + E L +GLR S+ + + + + K G V L Sbjct: 122 APLTSNPLGLRDKAMLELLYAAGLRVSEMVTLRLSEVDLEVGYVHCQGKGGKDRVVPLGR 181 Query: 240 GFMKLLAM----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAH 287 + T F+N + F +A A AG+++ + H Sbjct: 182 DAQTAVRRYLETSRPYLQRGWSSSTLFLNRFGYPLTRQGFWKLLRAYAIAAGIDRRVTPH 241 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 +R AT + GA + G + + YT Sbjct: 242 TLRHSFATHLLERGADLRAVQMMLGHADISTTQIYTH 278 >gi|71274794|ref|ZP_00651082.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella fastidiosa Dixon] gi|71897599|ref|ZP_00679844.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella fastidiosa Ann-1] gi|71902531|ref|ZP_00684453.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella fastidiosa Ann-1] gi|71164526|gb|EAO14240.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella fastidiosa Dixon] gi|71727745|gb|EAO30016.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella fastidiosa Ann-1] gi|71732502|gb|EAO34555.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella fastidiosa Ann-1] Length = 324 Score = 143 bits (360), Expect = 4e-32, Method: Composition-based stats. Identities = 54/274 (19%), Positives = 97/274 (35%), Gaps = 30/274 (10%) Query: 85 GSLAVNSRISFESYFDQIIR----KSGDFD-YRKITTKHIRSGVESRKHTPSSAIQFLTS 139 L+ ++ S+ + + R ++G + + ++P S + L+ Sbjct: 38 HGLSRHTLNSYRRDLEGLARWNNGRAGPLATLTPPALLDYLTWRTQQHYSPLSNARLLSV 97 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195 +R F +AV + NP + P + T+ ++ + EG + R Sbjct: 98 LRTFFSYAVECGWRNDNPSTLLAHPVLPHPLPKALTESQIEALLAAPSIETPEGLRNRAM 157 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLA-------- 246 E + +GLR S+ V L ++ T K G V L + L Sbjct: 158 LELMYAAGLRVSELVTLPVAMLNRRQGVLRITGKGGKERLVPLGEESQHWLQRYLEQARP 217 Query: 247 ---------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSA 294 G FIN + ++++ QF W K A AG+ S H +R A Sbjct: 218 SLAADKPIPADSDGDVPLFINTNLKRLSRQQFWRWIKHYAALAGIAPNKVSPHVLRHSFA 277 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADR 328 T + GA L G +++ + YT A + Sbjct: 278 THLLNHGADLRALQMLLGHRSISTTQIYTLIARQ 311 >gi|30264167|ref|NP_846544.1| site-specific tyrosine recombinase XerD [Bacillus anthracis str. Ames] gi|47778274|ref|YP_020956.2| site-specific tyrosine recombinase XerD [Bacillus anthracis str. 'Ames Ancestor'] gi|49186997|ref|YP_030249.1| site-specific tyrosine recombinase XerD [Bacillus anthracis str. Sterne] gi|49480325|ref|YP_038149.1| site-specific tyrosine recombinase XerD [Bacillus thuringiensis serovar konkukian str. 97-27] gi|65321483|ref|ZP_00394442.1| COG4974: Site-specific recombinase XerD [Bacillus anthracis str. A2012] gi|118479292|ref|YP_896443.1| site-specific tyrosine recombinase XerD [Bacillus thuringiensis str. Al Hakam] gi|165871247|ref|ZP_02215897.1| integrase/recombinase XerD [Bacillus anthracis str. A0488] gi|167633747|ref|ZP_02392071.1| integrase/recombinase XerD [Bacillus anthracis str. A0442] gi|167639424|ref|ZP_02397695.1| integrase/recombinase XerD [Bacillus anthracis str. A0193] gi|170687265|ref|ZP_02878483.1| integrase/recombinase XerD [Bacillus anthracis str. A0465] gi|170705812|ref|ZP_02896275.1| integrase/recombinase XerD [Bacillus anthracis str. A0389] gi|177652642|ref|ZP_02935058.1| integrase/recombinase XerD [Bacillus anthracis str. A0174] gi|190565945|ref|ZP_03018864.1| integrase/recombinase XerD [Bacillus anthracis Tsiankovskii-I] gi|196038584|ref|ZP_03105892.1| integrase/recombinase XerD [Bacillus cereus NVH0597-99] gi|196047216|ref|ZP_03114432.1| integrase/recombinase XerD [Bacillus cereus 03BB108] gi|218905229|ref|YP_002453063.1| integrase/recombinase XerD [Bacillus cereus AH820] gi|225866075|ref|YP_002751453.1| integrase/recombinase XerD [Bacillus cereus 03BB102] gi|227816868|ref|YP_002816877.1| integrase/recombinase XerD [Bacillus anthracis str. CDC 684] gi|228929139|ref|ZP_04092166.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228947809|ref|ZP_04110096.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229093151|ref|ZP_04224269.1| Tyrosine recombinase xerD [Bacillus cereus Rock3-42] gi|229123612|ref|ZP_04252807.1| Tyrosine recombinase xerD [Bacillus cereus 95/8201] gi|229186335|ref|ZP_04313500.1| Tyrosine recombinase xerD [Bacillus cereus BGSC 6E1] gi|229604915|ref|YP_002868390.1| integrase/recombinase XerD [Bacillus anthracis str. A0248] gi|254683858|ref|ZP_05147718.1| site-specific tyrosine recombinase XerD [Bacillus anthracis str. CNEVA-9066] gi|254721693|ref|ZP_05183482.1| site-specific tyrosine recombinase XerD [Bacillus anthracis str. A1055] gi|254736205|ref|ZP_05193911.1| site-specific tyrosine recombinase XerD [Bacillus anthracis str. Western North America USA6153] gi|254744094|ref|ZP_05201777.1| site-specific tyrosine recombinase XerD [Bacillus anthracis str. Kruger B] gi|254754126|ref|ZP_05206161.1| site-specific tyrosine recombinase XerD [Bacillus anthracis str. Vollum] gi|254758184|ref|ZP_05210211.1| site-specific tyrosine recombinase XerD [Bacillus anthracis str. Australia 94] gi|301055587|ref|YP_003793798.1| tyrosine recombinase [Bacillus anthracis CI] gi|30258812|gb|AAP28030.1| integrase/recombinase XerD [Bacillus anthracis str. Ames] gi|47551979|gb|AAT33431.2| integrase/recombinase XerD [Bacillus anthracis str. 'Ames Ancestor'] gi|49180924|gb|AAT56300.1| integrase/recombinase XerD [Bacillus anthracis str. Sterne] gi|49331881|gb|AAT62527.1| integrase/recombinase (tyrosine recombinase) [Bacillus thuringiensis serovar konkukian str. 97-27] gi|118418517|gb|ABK86936.1| tyrosine recombinase XerD subunit [Bacillus thuringiensis str. Al Hakam] gi|164713166|gb|EDR18693.1| integrase/recombinase XerD [Bacillus anthracis str. A0488] gi|167512483|gb|EDR87858.1| integrase/recombinase XerD [Bacillus anthracis str. A0193] gi|167531153|gb|EDR93840.1| integrase/recombinase XerD [Bacillus anthracis str. A0442] gi|170129352|gb|EDS98216.1| integrase/recombinase XerD [Bacillus anthracis str. A0389] gi|170668882|gb|EDT19627.1| integrase/recombinase XerD [Bacillus anthracis str. A0465] gi|172081977|gb|EDT67045.1| integrase/recombinase XerD [Bacillus anthracis str. A0174] gi|190562864|gb|EDV16830.1| integrase/recombinase XerD [Bacillus anthracis Tsiankovskii-I] gi|196021965|gb|EDX60656.1| integrase/recombinase XerD [Bacillus cereus 03BB108] gi|196030307|gb|EDX68906.1| integrase/recombinase XerD [Bacillus cereus NVH0597-99] gi|218535959|gb|ACK88357.1| integrase/recombinase XerD [Bacillus cereus AH820] gi|225786005|gb|ACO26222.1| integrase/recombinase XerD [Bacillus cereus 03BB102] gi|227002405|gb|ACP12148.1| integrase/recombinase XerD [Bacillus anthracis str. CDC 684] gi|228597129|gb|EEK54784.1| Tyrosine recombinase xerD [Bacillus cereus BGSC 6E1] gi|228659747|gb|EEL15392.1| Tyrosine recombinase xerD [Bacillus cereus 95/8201] gi|228690125|gb|EEL43919.1| Tyrosine recombinase xerD [Bacillus cereus Rock3-42] gi|228811796|gb|EEM58130.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228830429|gb|EEM76039.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|229269323|gb|ACQ50960.1| integrase/recombinase XerD [Bacillus anthracis str. A0248] gi|300377756|gb|ADK06660.1| tyrosine recombinase [Bacillus cereus biovar anthracis str. CI] Length = 296 Score = 143 bits (360), Expect = 4e-32, Method: Composition-based stats. Identities = 45/271 (16%), Positives = 104/271 (38%), Gaps = 25/271 (9%) Query: 85 GSLAVNSRISFES----YFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI---QFL 137 LA N+ +S+E Y + + + ++T HI + ++ K S+ + + Sbjct: 16 KGLAKNTVVSYERDLKSYVKYLQKVEQAKSFHEVTRLHIVNFLQHLKENGKSSKTLARHI 75 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPR 193 S+R ++ +R+ V +P + +E P+ + + + + ++++ G + + Sbjct: 76 ASIRSFHQFLLRERAVEHDPSVHIETPQGERKLPKVLSVDEVEALLQTPKMTSAFGVRDK 135 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLAMTPIGK 252 E L +GLR S+ ++ + + ++ K + L + + Sbjct: 136 AMLELLYATGLRVSELIALNLEDVHLTMGFVRCVGKGNKERIIPLGSLATEAIQKYIEKG 195 Query: 253 ----------ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300 + F+N+ +++ F K A +A + K + H +R AT + Sbjct: 196 RRELMGKKVVDALFLNHHGNRLSRQGFWKILKRLAKEANIEKELTPHTLRHSFATHLLEN 255 Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRL 331 GA + G + + YT + RL Sbjct: 256 GADLRAVQEMLGHADISTTQIYTH-VSKTRL 285 >gi|229019302|ref|ZP_04176128.1| Tyrosine recombinase xerD [Bacillus cereus AH1273] gi|229025548|ref|ZP_04181956.1| Tyrosine recombinase xerD [Bacillus cereus AH1272] gi|228735730|gb|EEL86317.1| Tyrosine recombinase xerD [Bacillus cereus AH1272] gi|228741987|gb|EEL92161.1| Tyrosine recombinase xerD [Bacillus cereus AH1273] Length = 296 Score = 143 bits (360), Expect = 4e-32, Method: Composition-based stats. Identities = 45/271 (16%), Positives = 108/271 (39%), Gaps = 25/271 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFD----YRKITTKHIRSGVESRKHTPSSAI---QFL 137 LA N+ +S+E ++ + + + ++T HI + ++ K S+ + + Sbjct: 16 KGLAKNTVVSYERDLKSYVKYLQNVEQTKTFHEVTRIHIVNFLQYLKENGKSSKTLARHI 75 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF----KSFWSEGSQPR 193 S+R ++ +R+ V +P + +E P+ + + + + ++++ K+ + G + + Sbjct: 76 ASIRSFHQFLLRERAVEHDPSVHIETPQGERKLPKVLSIDEVEALLQTPKAVSAFGIRDK 135 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGK 252 E L +GLR S+ ++ + + ++ K + L + + Sbjct: 136 AMLELLYATGLRVSELIALNLEDVHLTMGFVRCIGKGNKERIIPLGSLATEAIQKYIEKG 195 Query: 253 ----------ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300 + F+N+ +++ F K A +A + K + H +R AT + Sbjct: 196 RRELMGKKAVDALFLNHHGNRLSRQGFWKILKRLAKEANIEKELTPHTLRHSFATHLLEN 255 Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRL 331 GA + G + + YT + RL Sbjct: 256 GADLRAVQEMLGHADISTTQIYTH-VSKARL 285 >gi|304311873|ref|YP_003811471.1| Phage integrase/ Tyrosine recombinase XerD [gamma proteobacterium HdN1] gi|301797606|emb|CBL45827.1| Phage integrase/ Tyrosine recombinase XerD [gamma proteobacterium HdN1] Length = 316 Score = 143 bits (360), Expect = 4e-32, Method: Composition-based stats. Identities = 49/269 (18%), Positives = 89/269 (33%), Gaps = 23/269 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDY-----RKITTKHIRSGVESRKHTPSSAIQFLTS 139 L+ + ++ +Q R + T + S + L+ Sbjct: 38 KGLSSRTLEAYRQDLEQWCRWCSEQAVLLEQVDADTVQRYLQARAQHGTHSRSLARMLSC 97 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195 +R F + VR + +P VE PK R ++ D+ + + R Sbjct: 98 LRGFFAYQVRAGALTQDPTALVEAPKSGRPLPRSISEADVSALLAAPNLEDPLELRDRAM 157 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-IITVELPDGF----------MKL 244 E L +GLR S+ + + ++ G+ V L + + Sbjct: 158 LEVLYATGLRVSELIGLRLAQINRRQGVVRVMGKGSKERLVPLGEEALFWLERYFLQARA 217 Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGA 302 L ++ + F +M F K A +AG+ + S H +R AT + GA Sbjct: 218 LLLSSSDDDIVFPGRRGTEMTRQAFWYRIKYHAQQAGLRVHLSPHTLRHAFATHLINHGA 277 Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRL 331 + G + + YT A R+RL Sbjct: 278 DLRVVQMLLGHSDLSTTQIYTHVA-RLRL 305 >gi|85059151|ref|YP_454853.1| phage integrase [Sodalis glossinidius str. 'morsitans'] gi|84779671|dbj|BAE74448.1| phage integrase [Sodalis glossinidius str. 'morsitans'] Length = 338 Score = 143 bits (360), Expect = 4e-32, Method: Composition-based stats. Identities = 60/336 (17%), Positives = 109/336 (32%), Gaps = 39/336 (11%) Query: 7 LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHE--STFIPAYMSALTGSTPKREYINSP 64 LPP V + GK Y F G I L Y A ++ Sbjct: 13 LPPRVYR-----GKTQYEFHPASGGSISLCPLDSLIPVVWAKYEQANNYRNERK------ 61 Query: 65 RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124 L+ LI+++ SA + +LA ++ ++ +++ G + +HIR ++ Sbjct: 62 -----NLEHLINQFFLSADFMALAAETQKDYKRNSTRLLPVFGKMHPDNVKPQHIRKYMD 116 Query: 125 SRKHT-PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 R + A + +++W + NPC V + K + R T + + Sbjct: 117 KRGTKSKTQANHEKRFLSRVYRWGYERGITKGNPCSGVRQFKEEAR-DRYITDAEYEALY 175 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243 S R+A E R SD L ++ I KTG + K Sbjct: 176 SVAPA--TVRIAMEIAYLCCARQSDVLSLTKSQLLDDGIFICQGKTGKKQIKAWTERLKK 233 Query: 244 LL-------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-------NKSAHGV 289 ++ A + + + F+ + KA V + + H + Sbjct: 234 VIDLADSLPASQGVNSIYVLHQPNGNRYTRDGFNSSWAKARAKASVLHPELTFDFTFHDL 293 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 K + + E A G K++ Q Y + Sbjct: 294 -KAKGISDLE--GSLSEKQAISGHKSIGQTARYNRK 326 >gi|145632561|ref|ZP_01788295.1| tyrosine recombinase [Haemophilus influenzae 3655] gi|148825411|ref|YP_001290164.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae PittEE] gi|229845011|ref|ZP_04465148.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae 6P18H1] gi|260582592|ref|ZP_05850382.1| tyrosine recombinase XerD [Haemophilus influenzae NT127] gi|144986756|gb|EDJ93308.1| tyrosine recombinase [Haemophilus influenzae 3655] gi|148715571|gb|ABQ97781.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae PittEE] gi|229812145|gb|EEP47837.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae 6P18H1] gi|260094403|gb|EEW78301.1| tyrosine recombinase XerD [Haemophilus influenzae NT127] gi|301169019|emb|CBW28616.1| site-specific tyrosine recombinase [Haemophilus influenzae 10810] Length = 297 Score = 143 bits (360), Expect = 4e-32, Method: Composition-based stats. Identities = 46/282 (16%), Positives = 95/282 (33%), Gaps = 26/282 (9%) Query: 73 WLISEYRKSAHW--GSLAVNSRISFESYFDQIIRKSGDFDYR-----KITTKHIRSGVES 125 LI + W L+ N+ S+ + D + + Sbjct: 5 ALIDLFLNEY-WIEKGLSENTVQSYRLDLTALCDWLDKNDLSLETLDAVDLQGFLGERLE 63 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS- 184 + + +S + L++MR LF++ R++Y +P + PK + + T++ + + Sbjct: 64 KGYKATSTARMLSAMRKLFQYLYREKYRVDDPSAVLSSPKLPSRLPKYLTEQQVSDLLNT 123 Query: 185 ---FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG 240 + + E L +GLR ++ ++++ ++ K V + + Sbjct: 124 PDVEVPLELRDKAMLELLYATGLRVTELVSLTIENMSVQQGVVRVIGKGNKERIVPMGEE 183 Query: 241 FMKL-----LAMTPI-----GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAH 287 L P+ + F + Q+M F K A A ++ S H Sbjct: 184 AAYWVRQFMLYGRPVLLNGQSSDVVFPSQRAQQMTRQTFWHRVKHYAILADIDADALSPH 243 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 +R AT + GA + G + + YT A Sbjct: 244 VLRHAFATHLVNHGADLRVVQMLLGHTDLSTTQIYTHVAKER 285 >gi|253578510|ref|ZP_04855782.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251850828|gb|EES78786.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 294 Score = 143 bits (360), Expect = 4e-32, Method: Composition-based stats. Identities = 43/260 (16%), Positives = 91/260 (35%), Gaps = 22/260 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGD------FDYRKITTKHIRSGVESRKHTPSSAIQFLT 138 + N+ IS++ ++ + D +++ + S +E K SS + + Sbjct: 16 KKTSANTEISYQRDLKKMAEFLKERGIRNYKDVKELELEGYISYMEREKFASSSISRSVA 75 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRL 194 SMR F++ ++ +A +P +++ PK + T E++ + +G + Sbjct: 76 SMRAFFQYLWKEGVIAEDPADNLKPPKVEKRAPEILTIEEVDKLLQQPKLDTPKGIRDSA 135 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET 254 E L +G+R S+ + + + + G + + K + T Sbjct: 136 MLELLYATGMRVSEMLHLQIFDVNLQFGYVVCNENGKERIIPIGIPCKKAMERYLQTART 195 Query: 255 FFI----------NNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGA 302 F+ N + M+ F K A AG+ + H +R A GA Sbjct: 196 VFVKDEKETALFTNCSGKAMSRQGFWKVLKGYADDAGIKRDIAPHTLRHSFAVHMLQNGA 255 Query: 303 TAHELMATYGWKTVDQAETY 322 + G + + Y Sbjct: 256 DIRSVQEMLGHSDISTTQVY 275 >gi|205373757|ref|ZP_03226559.1| site-specific tyrosine recombinase XerD [Bacillus coahuilensis m4-4] Length = 297 Score = 143 bits (360), Expect = 4e-32, Method: Composition-based stats. Identities = 38/265 (14%), Positives = 96/265 (36%), Gaps = 25/265 (9%) Query: 85 GSLAVNSRISFESYFDQII------RKSGDFD-YRKITTKHIRSGVESRKHTPSSAIQFL 137 L+ N+ +S+E + D + + + ++ + + + + + Sbjct: 16 RGLSSNTLVSYERDLKSYCNHLKNTEQIEDLNHVVRGNIIEFLAFLKDQGKSSKTIARHI 75 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPR 193 S+R ++ +R++ +P + ++ PK + + + ++++ G + + Sbjct: 76 ASIRSFHQFLLREKITDHDPTVHIDTPKAERSLPKVLSLDEVETLLDSPNLQKPSGIRDK 135 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVEL-----------PDGF 241 E L +G+R S+ ++ + + ++ K + L + Sbjct: 136 AMLEILYATGIRVSELIELNLEDVHLTMGFVRCIGKGNKERIIPLGNHAITILKEYLEKA 195 Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299 L + + F+N+ ++ F K ATKA + K + H +R AT + Sbjct: 196 RPKLRSSKYRTDALFLNHHGNRLTRQGFWKILKGLATKANIQKELTPHTLRHSFATHLLE 255 Query: 300 AGATAHELMATYGWKTVDQAETYTK 324 GA + G + + YT Sbjct: 256 NGADLRAVQEMLGHADISTTQIYTH 280 >gi|254492686|ref|ZP_05105857.1| tyrosine recombinase XerD [Methylophaga thiooxidans DMS010] gi|224462207|gb|EEF78485.1| tyrosine recombinase XerD [Methylophaga thiooxydans DMS010] Length = 303 Score = 143 bits (360), Expect = 4e-32, Method: Composition-based stats. Identities = 45/267 (16%), Positives = 87/267 (32%), Gaps = 22/267 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDY-----RKITTKHIRSGVESRKHTPSSAIQFLTS 139 L+ N+ ++ D + + +S S + L++ Sbjct: 25 AGLSQNTVEAYRRDLLAFAAWLAKLDVDLAAATQHDIQRYQSQRMREGRKVRSEARLLST 84 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRLA 195 +R +++ +R++ +P +E P+ T++D++ + G + R Sbjct: 85 LRRFYRYLLREDIRDSDPTAQLESPRLGKPLPDSLTEQDVEDLLAQPDITDLLGLRDRTM 144 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVEL----PDGFMKLLAMTPI 250 E L SGLR S+ + + ++ K V L D + + Sbjct: 145 LELLYASGLRVSELVGLKQEQINMRQGLVRCIGKGNKERLVPLGEVALDWLQQYFYESRP 204 Query: 251 G------KETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302 G + F + M F K A +A + K S H +R AT + GA Sbjct: 205 GLLNGKVTDDVFPTRRGKAMTRQAFWYIIKRYAKQAQIQKTLSPHTLRHAFATHLLNHGA 264 Query: 303 TAHELMATYGWKTVDQAETYTKGADRI 329 + G + + YT A Sbjct: 265 DLRVVQLLLGHSDLSTTQIYTHVAKER 291 >gi|149372788|ref|ZP_01891809.1| site-specific recombinase [unidentified eubacterium SCB49] gi|149354485|gb|EDM43050.1| site-specific recombinase [unidentified eubacterium SCB49] Length = 299 Score = 143 bits (360), Expect = 4e-32, Method: Composition-based stats. Identities = 50/265 (18%), Positives = 93/265 (35%), Gaps = 26/265 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGVESRKHT--PSSAIQFLT 138 L+ N+ ++ ++ + + I+ K I+ + T PSS + ++ Sbjct: 18 RGLSDNTIANYALDILKLTKWLEENEMAISPIDISEKTIQEFIYEIAKTVAPSSQSRVIS 77 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRL 194 ++ F + V +EY NP +E PK + +++++ S +G + R Sbjct: 78 GLKGFFNYLVFEEYRTTNPLELMESPKIGRKLPDTLSEKEIDLLISEIDLSSPQGERNRA 137 Query: 195 AFEFLLYSGLRCSDSCRAGVQH--LQNNIFSIKTQKTGTIITVELPD-----------GF 241 E L GLR S+ + + + T K V + D Sbjct: 138 ILETLYGCGLRVSEIINLKISDLFFEEGFIKV-TGKGDKERFVPIGDNTIKFINIYRNEI 196 Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299 + P +T F+N + + K K G+ K S H R AT + Sbjct: 197 RVHEPIKPEASDTLFLNRRGKGLTRAMIFTIIKRLLEKTGIQKNVSPHTFRHSFATHLLE 256 Query: 300 AGATAHELMATYGWKTVDQAETYTK 324 GA + G +++ E YT Sbjct: 257 RGADLRAIQQMLGHESITTTEIYTH 281 >gi|68248917|ref|YP_248029.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae 86-028NP] gi|68057116|gb|AAX87369.1| Site-specific recombinase XerD [Haemophilus influenzae 86-028NP] Length = 297 Score = 143 bits (360), Expect = 4e-32, Method: Composition-based stats. Identities = 46/282 (16%), Positives = 95/282 (33%), Gaps = 26/282 (9%) Query: 73 WLISEYRKSAHW--GSLAVNSRISFESYFDQIIRKSGDFDYR-----KITTKHIRSGVES 125 LI + W L+ N+ S+ + D + + Sbjct: 5 ALIDLFLNEY-WIEKGLSENTVQSYRLDLTALCDWLDKNDLSLETLDAVDLQGFLGERLE 63 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS- 184 + + +S + L++MR LF++ R++Y +P + PK + + T++ + + Sbjct: 64 KGYKATSTARMLSAMRKLFQYLYREKYRVDDPSAVLSSPKLPSRLPKYLTEQQVSDLLNT 123 Query: 185 ---FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG 240 + + E L +GLR ++ ++++ ++ K V + + Sbjct: 124 PDVKVPLELRDKAMLELLYATGLRVTELVSLTIENMSVQQGVVRVIGKGNKERIVPMGEE 183 Query: 241 FMKL-----LAMTPI-----GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAH 287 L P+ + F + Q+M F K A A ++ S H Sbjct: 184 AAYWVRQFMLYGRPVLLNGQSSDVVFPSQRAQQMTRQTFWHRVKHYAILADIDADALSPH 243 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 +R AT + GA + G + + YT A Sbjct: 244 VLRHAFATHLVNHGADLRVVQMLLGHTDLSTTQIYTHVAKER 285 >gi|15614092|ref|NP_242395.1| integrase/recombinase [Bacillus halodurans C-125] gi|34223074|sp|Q9KCP0|XERD_BACHD RecName: Full=Tyrosine recombinase xerD gi|10174146|dbj|BAB05248.1| integrase/recombinase [Bacillus halodurans C-125] Length = 299 Score = 143 bits (360), Expect = 4e-32, Method: Composition-based stats. Identities = 38/264 (14%), Positives = 94/264 (35%), Gaps = 24/264 (9%) Query: 85 GSLAVNSRISFES-------YFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFL 137 L+ N+ S+ Y +++ + + T H + + +S + + Sbjct: 19 RGLSNNTIQSYGRDLKQYIQYVERVEEIRSARNITRETILHYLYHLREQGRAETSIARAV 78 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS----FWSEGSQPR 193 ++R ++ +R++ +P + VE PK + T E+++ + + + Sbjct: 79 AAIRSFHQFLLREKLSDSDPTVHVEIPKATKRLPKALTIEEVEALLNSPQGRDPFSLRNK 138 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLA------ 246 E L +G+R S+ + + ++ ++ K + + + + Sbjct: 139 AMLELLYATGMRVSELIGLTLSDIHLSMGFVRCLGKGNKERIIPIGQVATEAVESYLANG 198 Query: 247 ----MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300 M + F+N+ + ++ F K A ++K + H +R AT + Sbjct: 199 RGKLMKKQSHDHVFVNHHGRPLSRQGFWKMLKQLAKNVNIDKPLTPHTLRHSFATHLLEN 258 Query: 301 GATAHELMATYGWKTVDQAETYTK 324 GA + G + + YT Sbjct: 259 GADLRAVQEMLGHADISTTQIYTH 282 >gi|148379825|ref|YP_001254366.1| tyrosine recombinase XerD [Clostridium botulinum A str. ATCC 3502] gi|153931147|ref|YP_001384123.1| tyrosine recombinase XerD [Clostridium botulinum A str. ATCC 19397] gi|153934877|ref|YP_001387663.1| tyrosine recombinase XerD [Clostridium botulinum A str. Hall] gi|148289309|emb|CAL83405.1| tyrosine recombinase [Clostridium botulinum A str. ATCC 3502] gi|152927191|gb|ABS32691.1| tyrosine recombinase XerD [Clostridium botulinum A str. ATCC 19397] gi|152930791|gb|ABS36290.1| tyrosine recombinase XerD [Clostridium botulinum A str. Hall] Length = 291 Score = 143 bits (360), Expect = 5e-32, Method: Composition-based stats. Identities = 43/282 (15%), Positives = 106/282 (37%), Gaps = 21/282 (7%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD-----FDYRKITTKHIRSGVESR 126 K +I Y K +L+ N+ ++ ++ + +T ++ Sbjct: 2 KNIIENYIKDLQKKNLSKNTLEAYRRDVEKFSEFVRNREERILSVDTVTIMAFVQYLQRE 61 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 SS ++ + S+R +K+ +++ V+ +P L E PK + + + E++ + + Sbjct: 62 GRATSSIVRNIVSVRNFYKYLIKKNMVSEDPTLGYEIPKIERTIPKILSVEEVDKLLNSP 121 Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG--- 240 +G + + E + +G++ ++ + + IK + + + +P G Sbjct: 122 NSSKKGLRDKAMLELMYATGVKITELLNLNIYDINLKFNYIKCRGSKKRERI-IPIGSYA 180 Query: 241 ---FMKLLAMTPIGK----ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRK 291 L + P + F+N +M F K A +A ++K ++ +R Sbjct: 181 IKCLKNYLEVRPAINVYNLDYLFLNLKGTQMTRQGFWKIIKFYAKEASIDKEIDSYTLRH 240 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 A GA + G K + + Y+ + + ++ Sbjct: 241 SFAVHLLQNGADIKSVQELLGHKDLAATQIYSSISKKSKIAE 282 >gi|53715763|ref|YP_101755.1| tyrosine type site-specific recombinase [Bacteroides fragilis YCH46] gi|60683694|ref|YP_213838.1| putative tyrosine recombinase [Bacteroides fragilis NCTC 9343] gi|265767295|ref|ZP_06094961.1| tyrosine recombinase XerD [Bacteroides sp. 2_1_16] gi|52218628|dbj|BAD51221.1| tyrosine type site-specific recombinase [Bacteroides fragilis YCH46] gi|60495128|emb|CAH09949.1| putative tyrosine recombinase [Bacteroides fragilis NCTC 9343] gi|263252600|gb|EEZ24112.1| tyrosine recombinase XerD [Bacteroides sp. 2_1_16] Length = 317 Score = 143 bits (360), Expect = 5e-32, Method: Composition-based stats. Identities = 47/274 (17%), Positives = 100/274 (36%), Gaps = 23/274 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQII-----RKSGDFDYRKITTKHIRSGVESRK 127 +I +Y++ SL+ N+ ++ + ++++ + + +G+ Sbjct: 16 IIKKYQQYLKLEKSLSKNTLEAYLTDLEKLLSFLSAEGVEILEVSLTDLQRFAAGLHDIG 75 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 S + ++ ++ F + + +Y+ +P +E PK + T E++ + S Sbjct: 76 IHARSQARIISGIKSFFHFLIIADYIEADPSELLEGPKIGFKLPEVLTVEEIDRIISTID 135 Query: 188 ----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT-VELPDGF- 241 EG + R E L GLR S+ + L + IK + G+ V + Sbjct: 136 LSKNEGQRNRAILETLYSCGLRVSELTGLKLSDLYFDEGFIKVEGKGSKQRLVPISPKAI 195 Query: 242 ---------MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290 + + ++ F++ ++ K A AG+ K S H R Sbjct: 196 QEIKLYFLDRNRINIKKDHEDYLFLSRRGTHLSRIMIFHLIKELADMAGITKNISPHTFR 255 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK 324 AT + GA + G +++ E YT Sbjct: 256 HSFATHLLEGGANLRAIQCMLGHESISTTEIYTH 289 >gi|328957336|ref|YP_004374722.1| site-specific tyrosine recombinase XerD [Carnobacterium sp. 17-4] gi|328673660|gb|AEB29706.1| site-specific tyrosine recombinase XerD [Carnobacterium sp. 17-4] Length = 299 Score = 143 bits (360), Expect = 5e-32, Method: Composition-based stats. Identities = 48/264 (18%), Positives = 104/264 (39%), Gaps = 24/264 (9%) Query: 85 GSLAVNSRISFESYFDQ---IIRKSGDFDYRKITTKHIRSGVESRKHTPSSA---IQFLT 138 L+ N+ S++ Q I + + +I + S ++ K SA I+ ++ Sbjct: 19 RGLSKNTIESYKRDIRQYLVFIEQIKVTKWDQIDRYTVLSFLQDLKEKEKSAGTIIRMIS 78 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF----KSFWSEGSQPRL 194 +R ++ +++ +P L ++ PK+ + + + +++ + + + G + R Sbjct: 79 CLRQFHQFLKQEQISQSDPMLHIDTPKKAQKLPKVLSIKEVDRLIETPNTGETLGLRDRA 138 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLA------M 247 E + +GLR S+ + L ++ I+T K + L D + + Sbjct: 139 MLEVMYATGLRVSELTELKLDDLHLSLGLIQTIGKGDKERIIPLGDLAITWIEKYLRYSR 198 Query: 248 TPIGKE-----TFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300 T + K+ F+N+ +K+ K KAG+ K + H +R AT + Sbjct: 199 TKLEKDGQRSPHLFLNHHGRKLTRQGVWKNLKIIVKKAGIEKEVTPHTLRHSFATHLLEN 258 Query: 301 GATAHELMATYGWKTVDQAETYTK 324 GA + G + + YT Sbjct: 259 GADLRVVQELLGHSDISTTQIYTH 282 >gi|219871550|ref|YP_002475925.1| site-specific tyrosine recombinase XerD [Haemophilus parasuis SH0165] gi|219691754|gb|ACL32977.1| site-specific tyrosine recombinase XerD [Haemophilus parasuis SH0165] Length = 297 Score = 143 bits (360), Expect = 5e-32, Method: Composition-based stats. Identities = 40/279 (14%), Positives = 96/279 (34%), Gaps = 23/279 (8%) Query: 71 LKWLISEYRKSA-HWGSLAVNSRISFESYFD----QIIRKSGDFDYRKITTKHIRSGVES 125 L +I ++ + L+ N+ S+ + + + + + Sbjct: 4 LDPIIEQFLDTLWQEQGLSENTVASYRLDLESFTQWLSEPNAFLKVDYVDLQTFLGERLE 63 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----QQ 181 + + +S+ + L+ +R F++ ++Y +P ++ P++ + ++E + Sbjct: 64 QGYKATSSSRMLSCLRKFFRFLYLEKYRDDDPTATLTSPRKPAHLPKSLSEEQVLDLLNI 123 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG 240 + + + E L +GLR ++ + +L ++ K V L + Sbjct: 124 PNTQDPLELRDKAMLELLYATGLRVTELVSLTLDNLSLRQGLVRIIGKGDKERLVPLGEE 183 Query: 241 FMKLLAMTP----------IGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAH 287 + + + F + +M F K A AG++ S H Sbjct: 184 ASYWIQQFFEYGRSSLLNGMQSDVVFPSRLGNQMTRQTFWHRIKHYALLAGIDSNKLSPH 243 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 +R AT + GA + G + + YT+ A Sbjct: 244 VLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTQVA 282 >gi|238752994|ref|ZP_04614453.1| Tyrosine recombinase xerD [Yersinia rohdei ATCC 43380] gi|238708782|gb|EEQ01041.1| Tyrosine recombinase xerD [Yersinia rohdei ATCC 43380] Length = 299 Score = 143 bits (360), Expect = 5e-32, Method: Composition-based stats. Identities = 50/278 (17%), Positives = 97/278 (34%), Gaps = 26/278 (9%) Query: 74 LISEYRKSAHW--GSLAVNSRISFESYFDQI---IRKSGDFDYRK--ITTKHIRSGVESR 126 LI ++ A W +LA N+ S+ + + +G R + + Sbjct: 8 LIEQFL-DALWLERNLAENTLASYRLDLHALTGWLEHNGSDLLRAGSQDLQSFLAERIEG 66 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF- 185 + +S+ + L++MR LF++ R++ +P + PK + ++ + + Sbjct: 67 GYKATSSARLLSAMRRLFQYLYREKLREDDPTALLSSPKLPQRLPKDLSEAQVDALLNSP 126 Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGF 241 + + E L +GLR S+ + + ++ K V L + Sbjct: 127 NVDIPLELRDKAMLEVLYATGLRVSELVGLTISDVSLRQGVVRVIGKGNKERLVPLGEEA 186 Query: 242 MKLLAMTPIGKETFFIN----------NDKQKMNATQFSIWFKAKATKAGVN---KSAHG 288 + + + IN N Q+M F K A AG++ S H Sbjct: 187 VYWIENYMEHGRPWLINGHSLDVLFPSNRSQQMTRQTFWHRIKHYAILAGIDSERLSPHV 246 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 +R AT + GA + G + + YT A Sbjct: 247 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA 284 >gi|150003451|ref|YP_001298195.1| integrase [Bacteroides vulgatus ATCC 8482] gi|254881251|ref|ZP_05253961.1| integrase [Bacteroides sp. 4_3_47FAA] gi|294777667|ref|ZP_06743118.1| tyrosine recombinase XerD [Bacteroides vulgatus PC510] gi|319640253|ref|ZP_07994978.1| integrase [Bacteroides sp. 3_1_40A] gi|149931875|gb|ABR38573.1| integrase [Bacteroides vulgatus ATCC 8482] gi|254834044|gb|EET14353.1| integrase [Bacteroides sp. 4_3_47FAA] gi|294448735|gb|EFG17284.1| tyrosine recombinase XerD [Bacteroides vulgatus PC510] gi|317388028|gb|EFV68882.1| integrase [Bacteroides sp. 3_1_40A] Length = 313 Score = 143 bits (360), Expect = 5e-32, Method: Composition-based stats. Identities = 53/276 (19%), Positives = 106/276 (38%), Gaps = 23/276 (8%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQII-----RKSGDFDYRKITTKHIRSGVES 125 ++ +Y++ SL+ N+ ++ + D+++ D R + +G+ Sbjct: 8 DKILVKYKQYLKLEKSLSDNTVDAYLTDLDKLLAYLTLENINILDVRLENLEDFSAGLHD 67 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF--- 182 P S + L+ +R +++ + ++Y+ +P +E P+ + T E++ Sbjct: 68 IGIHPRSQARILSGIRSFYRFLIMEDYLKADPTELLESPQTGFKLPEVMTVEEIDLLIGS 127 Query: 183 -KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT-VELPDG 240 EG + R E L GLR S+ C + L IK + G+ V + Sbjct: 128 IDRSTKEGQRNRAILETLYSCGLRVSELCNLKLSELYFEEGFIKVEGKGSKQRLVPISPR 187 Query: 241 F----------MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHG 288 L+ + P ++ FI+N + ++ K A + G+ K S H Sbjct: 188 AIKEIRLYFTDRNLMKIKPGFEDFVFISNFGKNISRIMVFHIIKELAARIGLKKKISPHT 247 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 R AT + GA + G +++ E YT Sbjct: 248 FRHSFATHLLEGGANLRAIQCMLGHESIGTTEIYTH 283 >gi|238792839|ref|ZP_04636470.1| Tyrosine recombinase xerD [Yersinia intermedia ATCC 29909] gi|238727947|gb|EEQ19470.1| Tyrosine recombinase xerD [Yersinia intermedia ATCC 29909] Length = 299 Score = 143 bits (360), Expect = 5e-32, Method: Composition-based stats. Identities = 50/278 (17%), Positives = 97/278 (34%), Gaps = 26/278 (9%) Query: 74 LISEYRKSAHW--GSLAVNSRISFESYFDQI---IRKSGDFDYRK--ITTKHIRSGVESR 126 LI ++ A W +LA N+ S+ + + G R + + Sbjct: 8 LIEQFL-DALWLERNLAENTLASYRLDLHALTGWLEHHGSDLLRAGSQDLQSFLAERIEG 66 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF- 185 + +S+ + L++MR LF++ R++ +P + PK + ++ + + + Sbjct: 67 GYKATSSARLLSAMRRLFQYLYREKLREDDPTALLSSPKLPQRLPKDLSEAQVDRLLNSP 126 Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGF 241 + + E L +GLR S+ + + ++ K V L + Sbjct: 127 NVDIPLELRDKAMLEVLYATGLRVSELVGLTISDVSLRQGVVRVIGKGNKERLVPLGEEA 186 Query: 242 MKLLAMTPIGKETFFIN----------NDKQKMNATQFSIWFKAKATKAGVN---KSAHG 288 + + + IN N Q+M F K A AG++ S H Sbjct: 187 VYWIENYMEHGRPWLINGQSLDVLFPSNRSQQMTRQTFWHRIKHYAILAGIDSERLSPHV 246 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 +R AT + GA + G + + YT A Sbjct: 247 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA 284 >gi|145631442|ref|ZP_01787212.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae R3021] gi|144982979|gb|EDJ90488.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae R3021] Length = 297 Score = 143 bits (360), Expect = 5e-32, Method: Composition-based stats. Identities = 46/282 (16%), Positives = 95/282 (33%), Gaps = 26/282 (9%) Query: 73 WLISEYRKSAHW--GSLAVNSRISFESYFDQIIRKSGDFDYR-----KITTKHIRSGVES 125 LI + W L+ N+ S+ + D + + Sbjct: 5 ALIDLFLNEY-WIEKGLSENTVQSYRLDLTALCDWLDKNDLSLETLDAVDLQGFLGERLE 63 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + + +S + L++MR LF++ R++Y +P + PK + + T++ + + Sbjct: 64 KGYKATSTARMLSAMRKLFQYLYREKYRVDDPSAVLSSPKLPSRLPKYLTEQQVSDLLNT 123 Query: 186 W----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG 240 + + E L +GLR ++ ++++ ++ K V + + Sbjct: 124 PDVDVPLELRDKAMLELLYATGLRVTELVSLTIENMSVQQGVVRVIGKGNKERIVPMGEE 183 Query: 241 FMKL-----LAMTPI-----GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAH 287 L P+ + F + Q+M F K A A ++ S H Sbjct: 184 AAYWVRQFMLYGRPVLLNGQSSDVVFPSQRAQQMTRQTFWHRVKHYAILADIDADALSPH 243 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 +R AT + GA + G + + YT A Sbjct: 244 VLRHAFATHLVNHGADLRVVQMLLGHTDLSTTQIYTHVAKER 285 >gi|238754564|ref|ZP_04615918.1| Tyrosine recombinase xerD [Yersinia ruckeri ATCC 29473] gi|238707195|gb|EEP99558.1| Tyrosine recombinase xerD [Yersinia ruckeri ATCC 29473] Length = 299 Score = 143 bits (360), Expect = 5e-32, Method: Composition-based stats. Identities = 48/278 (17%), Positives = 95/278 (34%), Gaps = 26/278 (9%) Query: 74 LISEYRKSAHW--GSLAVNSRISFESYFDQI-----IRKSGDFDYRKITTKHIRSGVESR 126 LI ++ A W +LA N+ S+ + + + + Sbjct: 8 LIEQFL-DALWLERNLAENTLASYRLDLQALAGWLQRHNKSLLLADPLDLQSFLAERIEG 66 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF- 185 + +S+ + L++MR F++ R++ +P + PK + ++ + + Sbjct: 67 GYKATSSARLLSAMRRFFQYLYREKLREDDPTALLSSPKLPQRLPKDLSEAQVDALLNSP 126 Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG- 240 + + E L +GLR S+ + + ++ K V L + Sbjct: 127 NVDIPLELRDKAMLEVLYATGLRVSELVGLTISDVSLRQGVVRVIGKGNKERLVPLGEEA 186 Query: 241 ------FMKLLAMTPIGK---ETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHG 288 +M+ I + F +N Q+M F K A AG++ S H Sbjct: 187 VYWIENYMEYGRPWLINGQALDVLFPSNRSQQMTRQTFWHRIKHYAILAGIDSERLSPHV 246 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 +R AT + GA + G + + YT A Sbjct: 247 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA 284 >gi|323697881|ref|ZP_08109793.1| tyrosine recombinase XerD [Desulfovibrio sp. ND132] gi|323457813|gb|EGB13678.1| tyrosine recombinase XerD [Desulfovibrio desulfuricans ND132] Length = 307 Score = 142 bits (359), Expect = 5e-32, Method: Composition-based stats. Identities = 50/280 (17%), Positives = 99/280 (35%), Gaps = 24/280 (8%) Query: 74 LISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKH---IRSGVESRK 127 + Y + L+ NS + + ++ + F + +T + + + +R Sbjct: 17 WVDRYLEHLLIEKGLSENSLTGYANDLGSLLAFLEERSFPLKDLTDQTLFLYLTHLRARG 76 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-- 185 S + L+S+R F +AV +++ +P +E PK + ++E++ + + Sbjct: 77 LKSRSLARHLSSLRGFFAFAVGEKWYKEDPGQLLENPKLPRKLPEFLSREEISRVLALPD 136 Query: 186 --WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFM 242 G + ++ E L +GLR S+ V + +K K + + Sbjct: 137 TSTPLGMRDKVMLELLYAAGLRVSELIGMKVLDYDPQVGMLKVFGKGSKDRLIPIHYTAQ 196 Query: 243 KLLAM---------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRK 291 L P F N + + K A AG+ +S H R Sbjct: 197 DYLNRYLEFTRPGFKPREDFMFL-NRSGKGLTRQGVWKLIKKYAEAAGIKRSISPHTFRH 255 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIR 330 AT + GA + G + E YT A+R++ Sbjct: 256 SFATHLLEGGADLRTVQILLGHADISATEIYTHVEANRLK 295 >gi|307129430|ref|YP_003881446.1| site-specific tyrosine recombinase [Dickeya dadantii 3937] gi|306526959|gb|ADM96889.1| site-specific tyrosine recombinase [Dickeya dadantii 3937] Length = 299 Score = 142 bits (359), Expect = 5e-32, Method: Composition-based stats. Identities = 51/283 (18%), Positives = 103/283 (36%), Gaps = 27/283 (9%) Query: 74 LISEYRKSAHW--GSLAVNSRISFESYFDQIIRKSGDFDYRKITTK-----HIRSGVESR 126 LI ++ A W +LA N+ S+ + + D + + + Sbjct: 8 LIEQFL-DALWLERNLAENTLSSYRNDLRSLADWLAHHDSSLLQAQPSDLQDFLAERLEG 66 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF- 185 + +S+ + L++MR LF++ R++ +P + PK + T+ ++ + Sbjct: 67 GYKATSSARLLSAMRRLFQYLYREKQRPDDPSAPLSSPKLPQRLPKDLTEAQVEALLAAP 126 Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT-------- 234 + + E L +GLR S+ + + ++ G Sbjct: 127 VTDQPIELRDKAMLELLYATGLRVSELVGLTISDVSLRQGVVRVIGKGNKERLVPLGEEA 186 Query: 235 VELPDGFMKLLAMTPIGKETF---FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHG 288 V + +++ + +T F +N Q+M F K AT A ++ S H Sbjct: 187 VYWLEQYLEYSRPWLLNGQTLDVLFPSNRAQQMTRQTFWHRIKHYATLASIDSNKLSPHV 246 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIR 330 +R AT + GA + G + + YT A +R+R Sbjct: 247 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLR 289 >gi|229031733|ref|ZP_04187726.1| Tyrosine recombinase xerD [Bacillus cereus AH1271] gi|228729617|gb|EEL80604.1| Tyrosine recombinase xerD [Bacillus cereus AH1271] Length = 296 Score = 142 bits (359), Expect = 5e-32, Method: Composition-based stats. Identities = 44/271 (16%), Positives = 104/271 (38%), Gaps = 25/271 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGVESRKHTPSSAI---QFL 137 LA N+ +S+E ++ + + ++T HI + ++ K S+ + + Sbjct: 16 KGLAKNTVVSYERDLKSYVKYLQNVEQAKSFHEVTRLHIVNFLQHLKENGKSSKTLARHI 75 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPR 193 S+R ++ +R+ V +P + +E P+ + + + + ++++ G + + Sbjct: 76 ASIRSFHQFLLRERAVEHDPSVHIETPQGERKLPKVLSIDEVEALLQTPKMTSAFGVRDK 135 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGK 252 E L +GLR S+ ++ + + ++ K + L + + Sbjct: 136 AMLELLYATGLRVSELIALNLEDIHLTMGFVRCIGKGNKERIIPLGSLATEAIQKYIEKG 195 Query: 253 ----------ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300 + F+N+ +++ F K A +A + K + H +R AT + Sbjct: 196 RRELMGKRVVDALFLNHHGNRLSRQGFWKILKRLAKEANIEKELTPHTLRHSFATHLLEN 255 Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRL 331 GA + G + + YT + RL Sbjct: 256 GADLRAVQEMLGHADISTTQIYTH-VSKARL 285 >gi|170729959|ref|YP_001775392.1| site-specific tyrosine recombinase XerD [Xylella fastidiosa M12] gi|167964752|gb|ACA11762.1| integrase/recombinase [Xylella fastidiosa M12] Length = 324 Score = 142 bits (359), Expect = 5e-32, Method: Composition-based stats. Identities = 54/274 (19%), Positives = 97/274 (35%), Gaps = 30/274 (10%) Query: 85 GSLAVNSRISFESYFDQIIR----KSGDFD-YRKITTKHIRSGVESRKHTPSSAIQFLTS 139 L+ ++ S+ + + R ++G + + ++P S + L+ Sbjct: 38 HGLSRHTLNSYRRDLEGLARWNNGRAGPLATLTPPALLDYLTWRTQQHYSPLSNARLLSV 97 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195 +R F +AV + NP + P + T+ ++ + EG + R Sbjct: 98 LRTFFSYAVECGWRNDNPSTLLAHPVLPHPLPKALTESQIEALLAAPSIETPEGLRNRAM 157 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLA-------- 246 E + +GLR S+ V L ++ T K G V L + L Sbjct: 158 LELMYAAGLRVSELITLPVAMLNRRQGVLRITGKGGKERLVPLGEESQHWLQRYLEQARP 217 Query: 247 ---------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSA 294 G FIN + ++++ QF W K A AG+ S H +R A Sbjct: 218 SLAADKPIPADSDGDVPLFINTNLKRLSRQQFWRWIKHYAALAGIAPNKVSPHVLRHSFA 277 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADR 328 T + GA L G +++ + YT A + Sbjct: 278 THLLNHGADLRALQMLLGHRSISTTQIYTLIARQ 311 >gi|161611265|ref|YP_294803.2| site-specific tyrosine recombinase XerD [Ralstonia eutropha JMP134] Length = 305 Score = 142 bits (359), Expect = 5e-32, Method: Composition-based stats. Identities = 48/269 (17%), Positives = 92/269 (34%), Gaps = 24/269 (8%) Query: 86 SLAVNSRISFESYFDQIIR---KSGDFDYRKITTKHIRSGVESR--KHTPSSAIQFLTSM 140 L+ N+ ++ + R +S + I + + +R + SS+ + L Sbjct: 27 GLSRNTMDAYRRDLSMLARWLHQSSNGGLLGIGDTELNAYFLARHPETRASSSNRRLAVF 86 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAF 196 R ++WA+R++ + +PC+ + K+ + ++ ++ G + R Sbjct: 87 RRFYQWALREQMIEADPCILLRPAKQPPRVPKTLSEAQVEALLEAPDTTTPLGLRDRTML 146 Query: 197 EFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDGFMKLLAM------- 247 E + SGLR S+ + + + + K V L Sbjct: 147 ELMYASGLRVSELTQMKTVEIGLNEGVARVVGGKGDKERLVPFGMQASDWLRRYLGSARP 206 Query: 248 ---TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGA 302 + F+ + M F K A AG+ S H +R AT + GA Sbjct: 207 ALLAGRACDALFVTQRGEGMTRQAFWHLIKRHARDAGITAPLSPHTLRHAFATHLLNHGA 266 Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRL 331 + G + + YT A R RL Sbjct: 267 DLRVVQLLLGHADISTTQIYTHVA-RERL 294 >gi|91789051|ref|YP_550003.1| tyrosine recombinase XerD subunit [Polaromonas sp. JS666] gi|91698276|gb|ABE45105.1| tyrosine recombinase XerD subunit [Polaromonas sp. JS666] Length = 300 Score = 142 bits (359), Expect = 5e-32, Method: Composition-based stats. Identities = 52/272 (19%), Positives = 96/272 (35%), Gaps = 29/272 (10%) Query: 86 SLAVNSRISFESYFDQIIR------KSGDFDYRKITTKHIRSGVESRKHT-PSSAIQFLT 138 L+ N+ ++ + G + T R T +SA + LT Sbjct: 21 GLSKNTLAAYRRDLSLFAAWLAAPAQQGRRLDDTVETDLNRYFSTRHATTKATSANRRLT 80 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRL 194 + F+WA+R+ + ++P L ++ K+ + ++ ++ + G + R Sbjct: 81 VFKRYFRWALRERLITVDPTLKLQSAKQALRVPKVMSEAQVEALLAAPSESTPLGQRDRA 140 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-------------ITVELPDGF 241 E + SGLR S+ H+ N ++ G+ + + L + Sbjct: 141 MLELMYASGLRVSELVGLKTFHVGLNEGVLRVMGKGSKERLVPFGQVAREWVVLYLAEAR 200 Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISAD 299 +L F+ N M+ F + K A AG++ S H +R AT + Sbjct: 201 PAILGGQQTDD--LFVTNRGSGMSRVMFWMLVKKYAQLAGIHSPLSPHTLRHAFATHLLN 258 Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRL 331 GA + G + YT A R RL Sbjct: 259 HGADLRAVQMLLGHADISTTTIYTHVA-RERL 289 >gi|167856576|ref|ZP_02479280.1| tyrosine recombinase XerD [Haemophilus parasuis 29755] gi|167852293|gb|EDS23603.1| tyrosine recombinase XerD [Haemophilus parasuis 29755] Length = 297 Score = 142 bits (359), Expect = 6e-32, Method: Composition-based stats. Identities = 40/279 (14%), Positives = 96/279 (34%), Gaps = 23/279 (8%) Query: 71 LKWLISEYRKSA-HWGSLAVNSRISFESYFD----QIIRKSGDFDYRKITTKHIRSGVES 125 L +I ++ + L+ N+ S+ + + + + + Sbjct: 4 LDPIIEQFLDTLWQEQGLSENTVASYRLDLESFTQWLSEPNAFLKVDYVDLQTFLGERLE 63 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----QQ 181 + + +S+ + L+ +R F++ ++Y +P ++ P++ + ++E + Sbjct: 64 QGYKATSSSRMLSCLRKFFRFLYLEKYRDDDPTATLTSPRKPAHLPKSLSEEQVLDLLNI 123 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG 240 + + + E L +GLR ++ + +L ++ K V L + Sbjct: 124 PDTQDPLELRDKAMLELLYATGLRVTELVSLTLDNLSLRQGLVRIIGKGDKERLVPLGEE 183 Query: 241 FMKLLAMTP----------IGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAH 287 + + + F + +M F K A AG++ S H Sbjct: 184 ASYWIQQFFEYGRSSLLNGMQSDVVFPSRLGNQMTRQTFWHRIKHYALLAGIDSNKLSPH 243 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 +R AT + GA + G + + YT+ A Sbjct: 244 VLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTQVA 282 >gi|297584490|ref|YP_003700270.1| tyrosine recombinase XerD [Bacillus selenitireducens MLS10] gi|297142947|gb|ADH99704.1| tyrosine recombinase XerD [Bacillus selenitireducens MLS10] Length = 296 Score = 142 bits (359), Expect = 6e-32, Method: Composition-based stats. Identities = 51/276 (18%), Positives = 104/276 (37%), Gaps = 27/276 (9%) Query: 75 ISEY--RKSAHWGSLAVNSRISF----ESYFDQIIRKSGDFDYRKITTKH---IRSGVES 125 I Y S L+ + ++ Y + G F ++ + KH + Sbjct: 5 IDTYTHYLSVE-KGLSTKTIEAYAGDLSGYLTFLQDTYGIFSWKDVNKKHVLHYLQWMNQ 63 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 SS + L++++ L + + ++ + NP + +ERP++ + +++ S Sbjct: 64 SGKASSSISRTLSAIKSLHVFLMLEKEMDENPAVHIERPRKPAILPKTLAISEVEALFSA 123 Query: 186 W----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDG 240 + E L +G+R S+ C ++ L + +K T K T + L + Sbjct: 124 AEGNRPIDIRTVAMLEVLYSTGMRVSELCALELKDLNLEMGFVKCTGKGNTERIIPLGEF 183 Query: 241 FMKLLA-----MTPI-----GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHG 288 + + P+ F+N+ +++ F ++ ATKAG+ K S H Sbjct: 184 ATEAIRIYLDHARPVMMKDKEHHDLFVNHHGHRISRQGFWKLIRSLATKAGIQKEISPHT 243 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 +R AT + GA + G + + YT Sbjct: 244 LRHSFATHLLENGADLRSVQEMLGHSDISTTQIYTH 279 >gi|88813548|ref|ZP_01128781.1| tyrosine recombinase [Nitrococcus mobilis Nb-231] gi|88789177|gb|EAR20311.1| tyrosine recombinase [Nitrococcus mobilis Nb-231] Length = 313 Score = 142 bits (359), Expect = 6e-32, Method: Composition-based stats. Identities = 54/284 (19%), Positives = 99/284 (34%), Gaps = 20/284 (7%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130 L L E SAH S + +++ + + +G + + P Sbjct: 28 LDTLWMERGLSAHTLSAYRSDLVAYARWLE--RHGTGLLRAGRDGPTAYLAERVRSGVRP 85 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---- 186 + + L+++R ++ +R +A +P ++ PK +++++++ + Sbjct: 86 RTTARLLSTLRCFYRLQLRDGRLAEDPTAQLDSPKLDRPLPATLSEQEVEELLAAPDCQN 145 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLL 245 G + R E +GLR S+ + L + K V L D L Sbjct: 146 PIGLRDRTMLEVAYATGLRVSELVSLRLGQLNLRQGMARIIGKADKERLVPLGDEAQAWL 205 Query: 246 A----------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFS 293 +T FI + M F K A AG++K S H +R Sbjct: 206 EDYLQDARSVLLTHPSASVLFITRRGEAMTRQAFWYRIKYYAQVAGISKPLSPHTLRHSF 265 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 AT + GA + G + + YT A R RL ++R Sbjct: 266 ATHLLNHGADLRVVQLLLGHSDLTTTQIYTHVA-RQRLQELHAR 308 >gi|28211202|ref|NP_782146.1| integrase/recombinase [Clostridium tetani E88] gi|28203642|gb|AAO36083.1| integrase/recombinase [Clostridium tetani E88] Length = 303 Score = 142 bits (359), Expect = 6e-32, Method: Composition-based stats. Identities = 46/285 (16%), Positives = 107/285 (37%), Gaps = 20/285 (7%) Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISF----ESYFDQIIRKSGD-FDYRKITTKHIRSGV 123 T LI++Y L+ N+ ++ + D + + D D ++T + Sbjct: 10 RTRDELINKYVSRLMDKGLSKNTLDAYIRDVNRFLDFLKEREEDILDVEEVTIMAYVQSL 69 Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 + + SS ++ + S+R +K+ ++ Y+ +P ++ E PK K + T E++ Sbjct: 70 QKSRKANSSIVRNVVSIRNFYKFLYKKGYIDEDPVINYELPKVKRNIPKVLTVEEVDILL 129 Query: 184 SF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE--- 236 + +G + + E + +G++ ++ V + + IK + + + Sbjct: 130 NAPNISEEKGIRDKAMLEVMYATGVKVTELLNMTVFDVNLKLSYIKCRGSKNKERIIPIG 189 Query: 237 ------LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HG 288 L D + + F+N +M F K A +G+ KS + Sbjct: 190 AYAVNCLDDYLSVRPNINIYNLDYLFLNLKGTQMTRQGFWKIVKKYAKISGIKKSINSYT 249 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 +R A GA + G + + Y+ +++ ++ Sbjct: 250 LRHSFAVHLLQNGADMKSVQELLGHSDLAATQIYSTISNKSKIAE 294 >gi|325285115|ref|YP_004260905.1| Tyrosine recombinase xerC [Cellulophaga lytica DSM 7489] gi|324320569|gb|ADY28034.1| Tyrosine recombinase xerC [Cellulophaga lytica DSM 7489] Length = 298 Score = 142 bits (359), Expect = 6e-32, Method: Composition-based stats. Identities = 47/259 (18%), Positives = 90/259 (34%), Gaps = 23/259 (8%) Query: 96 ESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYV 153 E + +K+ I+ + + + + P S + ++ ++ F + + ++Y Sbjct: 33 EKLITFLNKKNITESPISISKETTQQFIYEISASINPRSQARIISGLKSFFNYLIFEDYR 92 Query: 154 AINPCLSVERPKRKTEGIRPWTKEDM----QQFKSFWSEGSQPRLAFEFLLYSGLRCSDS 209 A NP +E PK + + E++ EG + R E L GLR S+ Sbjct: 93 ADNPMDLIEAPKIGRKLPDTLSVEEINDLIDAIDLSKPEGERNRAMLETLYGCGLRVSEL 152 Query: 210 CRAGVQH--LQNNIFSIKTQKTGTIITVELP-----------DGFMKLLAMTPIGKETFF 256 + + + + T K V + D L + ++ F Sbjct: 153 TNLRLSDLFFKEDFIRV-TGKGDKQRFVPISNINKKYINIYKDEIRNHLNIKKGFEDILF 211 Query: 257 INNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWK 314 +N +++ K A G+ K S H +R AT + GA + G + Sbjct: 212 LNRRGRQLTRAMIFTIIKQLAETIGLKKTISPHTLRHSFATHLLENGADLRAIQQMLGHE 271 Query: 315 TVDQAETYTKGADRIRLGI 333 ++ E Y DR L Sbjct: 272 SITTTEVYVH-IDRKHLSQ 289 >gi|317049380|ref|YP_004117028.1| tyrosine recombinase XerD [Pantoea sp. At-9b] gi|316950997|gb|ADU70472.1| tyrosine recombinase XerD [Pantoea sp. At-9b] Length = 297 Score = 142 bits (359), Expect = 6e-32, Method: Composition-based stats. Identities = 49/288 (17%), Positives = 103/288 (35%), Gaps = 27/288 (9%) Query: 70 TLKWLISEYRKSAHW--GSLAVNSRISFESYFDQIIRKSGD-----FDYRKITTKHIRSG 122 T LI ++ + W +LA N+ S+ + + + + Sbjct: 2 TDSDLIEQFLDTL-WIERNLAQNTLASYRQDLQTLTGWLHHHERTLLTLEALDLQQFLAE 60 Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 + +S+ + L+++R LF++ R++ + +P + PK + ++ +++ Sbjct: 61 RVEGGYKATSSARTLSAIRRLFQYLYREKLRSDDPSALLSAPKLPQRLPKDLSESQVERL 120 Query: 183 K----SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVEL 237 + + + E L +GLR S+ + + ++ K V + Sbjct: 121 LQAPSTEIPLELRDKAMLELLYATGLRVSELVGLTLSDVSLRQGVVRVIGKGNKERLVPM 180 Query: 238 PDGFMKLLAMTPIGKETFFIN----------NDKQKMNATQFSIWFKAKATKAGVN---K 284 + + + + +N N QKM F K A AG++ Sbjct: 181 GEEAIYWIEHYMTHGRPWLLNGQTLDVLFPSNRAQKMTRQTFWHRIKHYALLAGIDSEKL 240 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRL 331 S H +R AT + GA + G + + YT A +R+RL Sbjct: 241 SPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRL 288 >gi|319896642|ref|YP_004134835.1| site-specific recombinase xerd [Haemophilus influenzae F3031] gi|317432144|emb|CBY80495.1| Site-specific recombinase XerD [Haemophilus influenzae F3031] Length = 297 Score = 142 bits (359), Expect = 6e-32, Method: Composition-based stats. Identities = 47/284 (16%), Positives = 97/284 (34%), Gaps = 27/284 (9%) Query: 73 WLISEYRKSAHW--GSLAVNSRISFESYFDQIIRKSGD-----FDYRKITTKHIRSGVES 125 LI + W L+ N+ S+ + + + Sbjct: 5 ALIDLFLNEY-WIEKGLSENTVQSYRLDLTALCDWLDKNGLSLETLDAVDLQGFLGERLE 63 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS- 184 + + +S + L++MR LF++ R++Y +P + PK + + T++ + + Sbjct: 64 KGYKATSTARMLSAMRKLFQYLYREKYRVDDPSAVLSSPKLPSRLPKYLTEQQVSDLLNT 123 Query: 185 ---FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG 240 + + E L +GLR ++ ++++ ++ K V + + Sbjct: 124 PDVEVPLELRDKAMLELLYATGLRVTELVSLTIENMSVQQGVVRVIGKGNKERIVPMGEE 183 Query: 241 FMKL-----LAMTPI-----GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAH 287 L P+ + F + Q+M F K A A ++ S H Sbjct: 184 AAYWVRQFMLYGRPVLLNGQSSDVVFPSQRTQQMTRQTFWHRVKHYAILADIDADALSPH 243 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 +R AT + GA + G + + YT A + RL Sbjct: 244 VLRHAFATHLVNHGADLRVVQMLLGHTDLSTTQIYTHVA-KERL 286 >gi|311030547|ref|ZP_07708637.1| hypothetical protein Bm3-1_08391 [Bacillus sp. m3-13] Length = 280 Score = 142 bits (359), Expect = 6e-32, Method: Composition-based stats. Identities = 48/271 (17%), Positives = 102/271 (37%), Gaps = 12/271 (4%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK--H 128 L + +Y+ + + ++ ++ ++R GD + +TT ++ + Sbjct: 3 LSQVWEKYQLDKKIEGYSPLTLKTYCFQYNMLLRYFGDIELNILTTDQLKEYLIKGSTHL 62 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 PSS + +R LFKWA + ++ NP ++ PK + T+ +++ + + Sbjct: 63 KPSSLGHRVRCIRSLFKWANDEGFIKKNPAAKLKEPKLGKRIPKFLTELEIEHLRESC-Q 121 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVE----LPDGFMK 243 S FEF +G R + + + + I K V + Sbjct: 122 NSMENALFEFFYSTGCRIGEVVKLNRDDINFASNSVIVHGKGDKEREVYFNTRCSLWLKR 181 Query: 244 LLAMTPIGKETFFINND--KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299 L ++ FI K++M+ K ++ AG+ K H +R AT + Sbjct: 182 YLDERDDQDQSLFITERRPKRRMSIDLIRYIIKRISSGAGIKKNIHPHQLRHSYATHMIN 241 Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIR 330 GA + + G + + Y + + ++R Sbjct: 242 NGAPLEVIQSLLGHEKSETTRIYAQLSGKLR 272 >gi|325577298|ref|ZP_08147782.1| tyrosine recombinase XerD [Haemophilus parainfluenzae ATCC 33392] gi|325160880|gb|EGC73001.1| tyrosine recombinase XerD [Haemophilus parainfluenzae ATCC 33392] Length = 297 Score = 142 bits (359), Expect = 6e-32, Method: Composition-based stats. Identities = 45/270 (16%), Positives = 94/270 (34%), Gaps = 24/270 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYR-----KITTKHIRSGVESRKHTPSSAIQFLTS 139 L+ N+ S+ + + + + + + +S + L++ Sbjct: 18 KGLSENTVQSYRLDLTALCDWLDKQNLSLETLDPLDLQQFLGSRLEQGYKATSTARMLSA 77 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS----FWSEGSQPRLA 195 MR LF++ R++Y +P + PK + + T++ + + + + Sbjct: 78 MRKLFQYLYREKYRTDDPSAVLNSPKLPSRLPKYLTEQQVTDLLNTPDVEIPLELRDKAM 137 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKL-----LAMTP 249 E L +GLR ++ ++++ ++ K V + + L P Sbjct: 138 LELLYATGLRVTELVTLTIENMNLQQGVVRVIGKGNKERIVPMGEEAAFWVRQFVLYGRP 197 Query: 250 I-----GKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAG 301 I + F + Q+M F K A A ++ S H +R AT + G Sbjct: 198 ILLNGQSSDVVFPSQRAQQMTRQTFWHRIKHYAVLAEIDTDALSPHVLRHAFATHLVNHG 257 Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRL 331 A + G + + YT A + RL Sbjct: 258 ADLRVVQMLLGHSDLSTTQIYTHVA-KERL 286 >gi|42783204|ref|NP_980451.1| site-specific tyrosine recombinase XerD [Bacillus cereus ATCC 10987] gi|206976263|ref|ZP_03237171.1| integrase/recombinase XerD [Bacillus cereus H3081.97] gi|217961583|ref|YP_002340153.1| site-specific tyrosine recombinase XerD [Bacillus cereus AH187] gi|229140825|ref|ZP_04269370.1| Tyrosine recombinase xerD [Bacillus cereus BDRD-ST26] gi|229198213|ref|ZP_04324921.1| Tyrosine recombinase xerD [Bacillus cereus m1293] gi|42739132|gb|AAS43059.1| integrase/recombinase XerD [Bacillus cereus ATCC 10987] gi|206745459|gb|EDZ56858.1| integrase/recombinase XerD [Bacillus cereus H3081.97] gi|217064224|gb|ACJ78474.1| integrase/recombinase XerD [Bacillus cereus AH187] gi|228585232|gb|EEK43342.1| Tyrosine recombinase xerD [Bacillus cereus m1293] gi|228642615|gb|EEK98901.1| Tyrosine recombinase xerD [Bacillus cereus BDRD-ST26] gi|324327997|gb|ADY23257.1| site-specific tyrosine recombinase XerD [Bacillus thuringiensis serovar finitimus YBT-020] Length = 296 Score = 142 bits (359), Expect = 6e-32, Method: Composition-based stats. Identities = 44/271 (16%), Positives = 104/271 (38%), Gaps = 25/271 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGVESRKHTPSSAI---QFL 137 LA N+ +S+E ++ + + ++T HI + ++ K S+ + + Sbjct: 16 KGLAKNTVVSYERDLKSYVKYLQNVEQAKSFHEVTRLHIVNFLQHLKENGKSSKTLARHI 75 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPR 193 S+R ++ +R+ V +P + +E P+ + + + + ++++ G + + Sbjct: 76 ASIRSFHQFLLRERAVEHDPSVHIETPQGERKLPKVLSVDEVEALLQTPKMTSAFGVRDK 135 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGK 252 E L +GLR S+ ++ + + ++ K + L + + Sbjct: 136 AMLELLYATGLRVSELIALNLEDVHLTMGFVRCIGKGNKERIIPLGSLATEAIQKYIEKG 195 Query: 253 ----------ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300 + F+N+ +++ F K A +A + K + H +R AT + Sbjct: 196 RRELMGKKVVDALFLNHHGNRLSRQGFWKILKRLAKEANIEKELTPHTLRHSFATHLLEN 255 Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRL 331 GA + G + + YT + RL Sbjct: 256 GADLRAVQEMLGHADISTTQIYTH-VSKTRL 285 >gi|291548057|emb|CBL21165.1| tyrosine recombinase XerD subunit [Ruminococcus sp. SR1/5] Length = 294 Score = 142 bits (358), Expect = 7e-32, Method: Composition-based stats. Identities = 42/260 (16%), Positives = 95/260 (36%), Gaps = 22/260 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDF------DYRKITTKHIRSGVESRKHTPSSAIQFLT 138 + N+ +S++ ++ D D ++ + S +E + S+ + + Sbjct: 16 KRTSHNTEVSYQRDLKKMAVYFADRGIYDIRDVGELELEGYLSYMERGQFASSTISRNVA 75 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRL 194 S+R LF++ ++ + +P L ++ PK + T +++ + +G + Sbjct: 76 SIRALFQYLYQENRIERDPSLELKPPKVEKRMPEILTVDEVDRLLKQPDLNTPKGIRDSA 135 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM---TPIG 251 E L +G+R S+ R ++ L + + + + + + G Sbjct: 136 MLELLYATGMRVSELLRLNLEDLNLRLGYVVCHDEDKERVIPIGNVCKTAMEKYLKEARG 195 Query: 252 K-------ETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGA 302 K E+ F N + M+ F K A +AG+ + + H +R A GA Sbjct: 196 KFVKENETESLFTNCSGKSMSRQGFWKVLKGYAEEAGIQHDITPHTLRHSFAAHMLQNGA 255 Query: 303 TAHELMATYGWKTVDQAETY 322 + G + + Y Sbjct: 256 DVKSVQEMLGHSDISTTQVY 275 >gi|29348252|ref|NP_811755.1| integrase [Bacteroides thetaiotaomicron VPI-5482] gi|253569382|ref|ZP_04846792.1| integrase [Bacteroides sp. 1_1_6] gi|298386055|ref|ZP_06995612.1| tyrosine recombinase XerD [Bacteroides sp. 1_1_14] gi|29340155|gb|AAO77949.1| integrase [Bacteroides thetaiotaomicron VPI-5482] gi|251841401|gb|EES69482.1| integrase [Bacteroides sp. 1_1_6] gi|298261283|gb|EFI04150.1| tyrosine recombinase XerD [Bacteroides sp. 1_1_14] Length = 319 Score = 142 bits (358), Expect = 7e-32, Method: Composition-based stats. Identities = 50/275 (18%), Positives = 99/275 (36%), Gaps = 24/275 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQI-----IRKSGDFDYRKITTKHIRSGVESRK 127 +I +Y++ SL+ N+ ++ + D++ + + + +G+ Sbjct: 16 IIRKYQQYLKLEKSLSPNTLDAYLTDLDKLMSFLTLEGIDVLEVCLSDLQRFAAGLHDIG 75 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 P S + L+ ++ F++ + +Y+ +P +E PK + T E++ S Sbjct: 76 IHPRSQARILSGIKSFFRFLIMADYLEADPSELLEGPKIGLKLPEVLTVEEIDNIISSVD 135 Query: 188 ----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT-VELPDGFM 242 EG + R E L GLR S+ + L + IK + G+ V + + Sbjct: 136 RSKAEGQRNRAILETLYSCGLRVSELVSLKLSDLYFDEGFIKVEGKGSKQRLVPISPRAI 195 Query: 243 -----------KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289 ++ F + ++ K A AG+ K S H Sbjct: 196 NEIKLYFLDRNRIEVKKDYEDFVFVSQRRGKSLSRIMIFHMIKELAQNAGITKNISPHTF 255 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 R AT + GA + G +++ E YT Sbjct: 256 RHSFATHLLEGGANLRAIQCMLGHESIATTEIYTH 290 >gi|229163028|ref|ZP_04290984.1| Tyrosine recombinase xerD [Bacillus cereus R309803] gi|228620434|gb|EEK77304.1| Tyrosine recombinase xerD [Bacillus cereus R309803] Length = 296 Score = 142 bits (358), Expect = 7e-32, Method: Composition-based stats. Identities = 44/271 (16%), Positives = 105/271 (38%), Gaps = 25/271 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFD----YRKITTKHIRSGVESRKHTPSSAI---QFL 137 LA N+ +S+E ++ + + + ++T HI + ++ K S+ + + Sbjct: 16 KGLAKNTVVSYERDLKSYVKYLQNVEQTKTFHEVTRLHIVNFLQHLKENGKSSKTLARHI 75 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPR 193 S+R ++ +R+ V +P + +E P+ + + + + ++++ G + + Sbjct: 76 ASIRSFHQFLLRERAVEHDPSVHIETPQGERKLPKVLSVDEVEALLQTPKMTSAFGVRDK 135 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGK 252 E L +GLR S+ ++ + + ++ K + L + + Sbjct: 136 AMLELLYATGLRVSELIALNLEDVHLTMGFVRCIGKGNKERIIPLGSLATEAIQKYIEKG 195 Query: 253 ----------ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300 + F+N+ +++ F K A +A + K + H +R AT + Sbjct: 196 RRELMGKKVVDALFLNHHGNRLSRQGFWKILKRLAKEANIEKELTPHTLRHSFATHLLEN 255 Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRL 331 GA + G + + YT + RL Sbjct: 256 GADLRAVQEMLGHADISTTQIYTH-VSKTRL 285 >gi|237734604|ref|ZP_04565085.1| tyrosine recombinase xerC [Mollicutes bacterium D7] gi|229382424|gb|EEO32515.1| tyrosine recombinase xerC [Coprobacillus sp. D7] Length = 304 Score = 142 bits (358), Expect = 7e-32, Method: Composition-based stats. Identities = 46/286 (16%), Positives = 94/286 (32%), Gaps = 33/286 (11%) Query: 68 PTTLKWLISEYRKSAHWGS-LAVNSRISFESYFDQI--------IRKSGDFDYRKITTKH 118 TTL +Y + A + S++ D I D Y + + Sbjct: 4 KTTLDNYFRQYLDYLQYQRHYADKTIESYKRQIDHFKQFLIEESIDDYNDVSYAML--RG 61 Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 + + + + ++ L+++R F + +++E + NP L +E K E+ Sbjct: 62 YLTKLYEKNLSKTTINHKLSALRSFFNYLLKEELINDNPFLLIESQKVAKRNPDFLFPEE 121 Query: 179 M----QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTII 233 + ++ G + + E + SGLRCS+ + ++ N + K Sbjct: 122 ILGLLDSIETKDDLGIRNKAMMELMYASGLRCSEVVNLQLSNIDFNQMVLFIHGKGNKDR 181 Query: 234 TVELPD-----------GFMKLLAMTPIGKETFFINNDKQKMNATQFSIW----FKAKAT 278 V D + L + G F+N + + + Sbjct: 182 YVPFHDYAGEWLIKYIQEARENLMIKNEGHNFVFVNKFGNPLTNRGVENIVDRIMRLYDS 241 Query: 279 KAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 ++ H +R AT +AGA + G + + + YT Sbjct: 242 TKKIH--PHTIRHSFATHLLNAGADIRTVQELLGHENLSTTQIYTH 285 >gi|145634691|ref|ZP_01790400.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae PittAA] gi|145268236|gb|EDK08231.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae PittAA] Length = 297 Score = 142 bits (358), Expect = 7e-32, Method: Composition-based stats. Identities = 46/282 (16%), Positives = 95/282 (33%), Gaps = 26/282 (9%) Query: 73 WLISEYRKSAHW--GSLAVNSRISFESYFDQIIRKSGDFDYR-----KITTKHIRSGVES 125 LI + W L+ N+ S+ + D + + Sbjct: 5 ALIDLFLNEY-WIEKGLSENTVQSYRLDLTALCDWLDKNDLSLETLDAVDLQGFLGERLE 63 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS- 184 + + +S + L++MR LF++ R++Y +P + PK + + T++ + + Sbjct: 64 KGYKATSTARMLSAMRKLFQYLYREKYRVDDPSAVLSSPKLPSRLPKYLTEQQVSDLLNT 123 Query: 185 ---FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG 240 + + E L +GLR ++ ++++ ++ K V + + Sbjct: 124 PDVEVPLELRDKAMLELLYATGLRVTELVSLTIENMSVQQGVVRVIGKGNKERIVPMGEE 183 Query: 241 FMKL-----LAMTPI-----GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAH 287 L P+ + F + Q+M F K A A ++ S H Sbjct: 184 AAYWVRQFMLYGRPVLLNRQSSDVVFPSQRAQQMTRQTFWHRVKHYAILADIDADTLSPH 243 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 +R AT + GA + G + + YT A Sbjct: 244 VLRHAFATHLVNHGADLRVVQMLLGHTDLSTTQIYTHVAKER 285 >gi|150026059|ref|YP_001296885.1| tyrosine recombinase XerD [Flavobacterium psychrophilum JIP02/86] gi|149772600|emb|CAL44083.1| Tyrosine recombinase XerD [Flavobacterium psychrophilum JIP02/86] Length = 299 Score = 142 bits (358), Expect = 7e-32, Method: Composition-based stats. Identities = 53/274 (19%), Positives = 99/274 (36%), Gaps = 27/274 (9%) Query: 85 GSLAVNSRISFESYFD----QIIRKSGDFDYRKITTKHIRSGVE--SRKHTPSSAIQFLT 138 L+ NS ++ + + + I + I+ + S+ P S + ++ Sbjct: 18 RGLSKNSVANYVLDIEKLNHYLSDNNIHVSPVNINEQTIQQFIYEISKSVNPRSQARTIS 77 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRL 194 ++ F + + ++Y NP +E P+ + ED+ + + +EG + R Sbjct: 78 GLKSFFSYLIFEDYRPDNPLALIETPRLGRKLPDTLNIEDIDKLIAAINLTTNEGERNRA 137 Query: 195 AFEFLLYSGLRCSDSCRAGVQH--LQNNIFSIKTQKTGTIITVELPDGFMK--------- 243 E L GLR S+ + I T K V + + K Sbjct: 138 MLETLYACGLRVSELVSLKISDLFFAEGFIKI-TGKGNKQRFVPISEYTQKYIEIYKNTD 196 Query: 244 --LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299 LL++ ++T F+N +++ K A + G+NK S H R AT + Sbjct: 197 RNLLSIQKGHEDTLFLNRRGRQLTRAMIFTIIKNLAVEIGLNKVISPHTFRHSFATHLLE 256 Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 GA + G +++ E Y DR L Sbjct: 257 NGADLRSIQLMLGHESITTTEIYMH-VDRKHLSQ 289 >gi|114048718|ref|YP_739268.1| tyrosine recombinase XerD [Shewanella sp. MR-7] gi|113890160|gb|ABI44211.1| tyrosine recombinase XerD [Shewanella sp. MR-7] Length = 300 Score = 142 bits (358), Expect = 7e-32, Method: Composition-based stats. Identities = 50/288 (17%), Positives = 104/288 (36%), Gaps = 26/288 (9%) Query: 74 LISEYRKSAHW--GSLAVNSRISFESYFDQIIRKSGDFDYRKITT-----KHIRSGVESR 126 LI + W L+ N+ ++ + R R I + + + Sbjct: 10 LIDAFLDDL-WSSKGLSDNTLSAYRTDLRHFDRYQQSQGLRLIEVGQADVRAYLAYRVQQ 68 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF- 185 + +S+ + L+S+R + + ++ + +A +P +E PK + ++ + + + Sbjct: 69 QFARTSSARLLSSLRRFYTYLLQTKQIAGDPMALIESPKLSRQLPDSLSESQVDRLLAEP 128 Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPD-- 239 + + E L +GLR S+ ++ + ++ K G V + + Sbjct: 129 NVDDPVECRDKAMLELLYATGLRVSELVGLTMEQMSLRQGLVRIVGKGGKERLVPMGELA 188 Query: 240 --------GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGV 289 F + + I + F + Q M F K A++AG+ S H + Sbjct: 189 ITEVERYLSFARHELLGNIQSDVVFPSKRSQMMTRQTFWHRIKLYASRAGIETELSPHTL 248 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 R AT + GA + G + + YT A R RL + + Sbjct: 249 RHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVA-RARLQELHQQ 295 >gi|327438335|dbj|BAK14700.1| integrase [Solibacillus silvestris StLB046] Length = 280 Score = 142 bits (358), Expect = 8e-32, Method: Composition-based stats. Identities = 45/271 (16%), Positives = 102/271 (37%), Gaps = 12/271 (4%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-- 128 L +Y++ + + ++ ++ ++R GD D +T+ ++ + + Sbjct: 3 LSEAWKKYQQDKKIEGYSTLTLKTYCFQYNLLLRFFGDIDMNGFSTEKLKEYLIQSGNHL 62 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 PSS + ++ LF+W+ + Y+ NP ++ PK + ++ +++ + Sbjct: 63 KPSSLGHRIRCVKSLFRWSHEEGYILKNPAAKLKEPKLGKRIPKFLSELEIEHLREACQT 122 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVE----LPDGFMK 243 + FEF+ +G R + + + I K V + Sbjct: 123 -TMENALFEFMYSTGCRIGEVVKLDRHDIDFRTNSVIVQGKGDKEREVYFNTRCSIWLKR 181 Query: 244 LLAMTPIGKETFFINND--KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299 L FI + K++M+ K + +AG+ K H +R AT + Sbjct: 182 YLDEREDDDPCLFITDRKPKRRMSIDNLRYIIKRVSNRAGIKKCIHPHQLRHSYATHMIN 241 Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIR 330 GA + + G + + + Y + + +IR Sbjct: 242 NGAPIDVIQSLLGHEKSETTKIYAQLSGKIR 272 >gi|52141402|ref|YP_085426.1| site-specific tyrosine recombinase XerD [Bacillus cereus E33L] gi|228987282|ref|ZP_04147403.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229157674|ref|ZP_04285749.1| Tyrosine recombinase xerD [Bacillus cereus ATCC 4342] gi|51974871|gb|AAU16421.1| integrase/recombinase (tyrosine recombinase) [Bacillus cereus E33L] gi|228625631|gb|EEK82383.1| Tyrosine recombinase xerD [Bacillus cereus ATCC 4342] gi|228772511|gb|EEM20956.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 296 Score = 142 bits (358), Expect = 8e-32, Method: Composition-based stats. Identities = 45/271 (16%), Positives = 104/271 (38%), Gaps = 25/271 (9%) Query: 85 GSLAVNSRISFES----YFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI---QFL 137 LA N+ +S+E Y + + + ++T HI + ++ K S+ + + Sbjct: 16 KGLAKNTVVSYERDLKSYVKYLQKVEQAKSFHEVTRLHIVNFLQHLKENGKSSKTLARHI 75 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPR 193 S+R ++ +R+ V +P + +E P+ + + + + ++++ G + + Sbjct: 76 ASIRSFHQFLLRERAVEHDPSVHIETPQGERKLPKVLSVDEVEALLQTPKMTSAFGVRDK 135 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGK 252 E L +GLR S+ ++ + + ++ K + L + + Sbjct: 136 AMLELLYATGLRVSELIALNLEDVHLTMGFVRCIGKGNKERIIPLGSLATEAIQKYIEKG 195 Query: 253 ----------ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300 + F+N+ +++ F K A +A + K + H +R AT + Sbjct: 196 RRELMGKKVVDALFLNHHGNRLSRQGFWKILKRLAKEANIEKELTPHTLRHSFATHLLEN 255 Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRL 331 GA + G + + YT + RL Sbjct: 256 GADLRAVQEMLGHADISTTQIYTH-VSKTRL 285 >gi|189465186|ref|ZP_03013971.1| hypothetical protein BACINT_01531 [Bacteroides intestinalis DSM 17393] gi|189437460|gb|EDV06445.1| hypothetical protein BACINT_01531 [Bacteroides intestinalis DSM 17393] Length = 316 Score = 142 bits (358), Expect = 8e-32, Method: Composition-based stats. Identities = 52/274 (18%), Positives = 99/274 (36%), Gaps = 23/274 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQII-----RKSGDFDYRKITTKHIRSGVESRK 127 +I +Y++ +L+ N+ ++ + ++++ + +G+ Sbjct: 16 IIRKYQQYLKLEKALSANTLDAYLTDLNKLLCFLKTENIDMLAVTLDDLQRFAAGLHDIG 75 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 P S + L+ ++ F + V +Y +P +E PK + T E++ S Sbjct: 76 IHPRSQARILSGIKSFFHFLVMADYREDDPSELLEGPKIGFKLPEVLTVEEIDTIISTVD 135 Query: 188 ----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT-VELPDGF- 241 EG + R E L GLR S+ C + L + IK + G+ V + Sbjct: 136 MSKKEGQRNRAILETLYSCGLRVSELCNLKLSELYFDEGFIKVEGKGSKQRLVPISPRAI 195 Query: 242 ---------MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290 L + ++ F+ ++ K A KAG+ K S H R Sbjct: 196 KEIKYWLLDRNLGKIKKGFEDYVFLARWGNSISRIMVFHLIKELAEKAGITKNISPHTFR 255 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK 324 AT + GA + G +++ E YT Sbjct: 256 HSFATHLLEGGANLRAIQCMLGHESIATTEIYTH 289 >gi|85059199|ref|YP_454901.1| putative phage integrase [Sodalis glossinidius str. 'morsitans'] gi|84779719|dbj|BAE74496.1| putative phage integrase [Sodalis glossinidius str. 'morsitans'] Length = 340 Score = 142 bits (358), Expect = 8e-32, Method: Composition-based stats. Identities = 64/337 (18%), Positives = 113/337 (33%), Gaps = 39/337 (11%) Query: 6 RLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHE---STFIPAYMSALTGSTPKREYIN 62 +L V + GK YF+ + I L P + S Y L Sbjct: 12 KLSKNVYR-----GKYKTYFKPSQNQTIAL-GPKDMSISETWRQYEVEL----------- 54 Query: 63 SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG 122 S K T L + SA++ L ++ + + ++I G+ I +H+R+ Sbjct: 55 SELTKVITFSRLWHSFLGSAYFSELKPRTQKDYLQHQKKLIAVFGEVKADNIKPEHVRTF 114 Query: 123 VESRK-HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 ++ R + + A + SM ++KW + YV NPC V + K R T E+ Sbjct: 115 MDKRGLQSKTQANHEMASMSHVYKWGYERGYVKGNPCAGVMKFKAVKR-DRYITDEEYTA 173 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241 + + + A E R SD Q + I+ KTG Sbjct: 174 IYNAADD--VVKAAMEIAYLCAARLSDVLGMKWQQITEQGIFIQQVKTGIKQIKAWTPRL 231 Query: 242 MKLLAM-----TPIGKET-FFINNDKQKMNATQFSIWFKAKATKAG------VNKSAHGV 289 + + + P +T + K FS + +KA ++ + H + Sbjct: 232 REAIEIAKSSSAPAQADTPVIMGQHKGHYTKRGFSNRWTEARSKASAQLGYELDCTFHDL 291 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 K +D + + G K+ Q Y + Sbjct: 292 -KAKG--ISDYKGSTKDKQLFSGHKSESQVLVYDRKV 325 >gi|157374032|ref|YP_001472632.1| tyrosine recombinase XerD [Shewanella sediminis HAW-EB3] gi|157316406|gb|ABV35504.1| tyrosine recombinase XerD [Shewanella sediminis HAW-EB3] Length = 304 Score = 142 bits (358), Expect = 8e-32, Method: Composition-based stats. Identities = 49/275 (17%), Positives = 103/275 (37%), Gaps = 23/275 (8%) Query: 85 GSLAVNSRISFE---SYFDQIIRKSGD--FDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139 L+ N+ ++ ++FD+ I++SG + + + + +S+ + ++S Sbjct: 26 RGLSDNTLSAYRTDLNHFDRHIQRSGQQLTEVSQEGIRGYLDIRFEQGFARTSSARLVSS 85 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195 +R + + V + + INP ++ PK + ++ D+ + S S + + Sbjct: 86 LRRFYGFLVICKKIEINPTAQIKSPKIARKLPGSLSEFDVDRLLSEPDVEDSIECRDKAM 145 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGF----------MKL 244 E L +GLR ++ ++ L ++ K G V + + + Sbjct: 146 LELLYATGLRVTELVSLTMEQLSLRQGLVRVIGKGGKERLVPMGELAVDNIEYYLQGARA 205 Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGA 302 + + F + M F K A ++GV S H +R AT + GA Sbjct: 206 ELLKQKQSDVLFPSKRGVMMTRQTFWHRIKLYALRSGVSTELSPHTLRHAFATHLLNHGA 265 Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 + G + + YT A + RL +S Sbjct: 266 DLRVVQLLLGHSDLSTTQIYTHVA-KARLSQLHSE 299 >gi|238783654|ref|ZP_04627674.1| Tyrosine recombinase xerD [Yersinia bercovieri ATCC 43970] gi|238715367|gb|EEQ07359.1| Tyrosine recombinase xerD [Yersinia bercovieri ATCC 43970] Length = 299 Score = 142 bits (358), Expect = 8e-32, Method: Composition-based stats. Identities = 50/278 (17%), Positives = 96/278 (34%), Gaps = 26/278 (9%) Query: 74 LISEYRKSAHW--GSLAVNSRISFESYFDQI---IRKSGDFDYRK--ITTKHIRSGVESR 126 LI ++ A W +LA N+ S+ + + G R + + Sbjct: 8 LIEQFL-DALWLERNLAENTLASYRLDLHALTGWLDHHGSDLLRAGSQELQSFLAERIEG 66 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF- 185 + +S+ + L++MR LF++ R++ +P + PK + ++ + + Sbjct: 67 GYKATSSARLLSAMRRLFQYLYREKLRDDDPTAILSSPKLPQRLPKDLSEAQVDTLLNSP 126 Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGF 241 + + E L +GLR S+ + + ++ K V L + Sbjct: 127 NVDIPLELRDKAMLEVLYATGLRVSELVGLTISDVSLRQGVVRVIGKGNKERLVPLGEEA 186 Query: 242 MKLLAMTPIGKETFFIN----------NDKQKMNATQFSIWFKAKATKAGVN---KSAHG 288 + + + IN N Q+M F K A AG++ S H Sbjct: 187 VYWIENYMDHGRPWLINGQSLDVLFPSNRSQQMTRQTFWHRIKHYAILAGIDSERLSPHV 246 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 +R AT + GA + G + + YT A Sbjct: 247 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA 284 >gi|187779532|ref|ZP_02996005.1| hypothetical protein CLOSPO_03128 [Clostridium sporogenes ATCC 15579] gi|187773157|gb|EDU36959.1| hypothetical protein CLOSPO_03128 [Clostridium sporogenes ATCC 15579] Length = 291 Score = 142 bits (358), Expect = 8e-32, Method: Composition-based stats. Identities = 44/282 (15%), Positives = 106/282 (37%), Gaps = 21/282 (7%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS-GD----FDYRKITTKHIRSGVESR 126 K +I Y K +L+ N+ ++ ++ G +T ++ Sbjct: 2 KNIIEIYIKDLQKKNLSKNTLEAYRRDVEKFSEFVKGREEKILSVDTVTIMAFVQYLQRE 61 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 SS ++ + S+R +K+ +++ V+ +P L E PK + + + E++ + + Sbjct: 62 GRATSSIVRNIVSIRNFYKYLIKKNMVSEDPTLGYEIPKIERTIPKILSVEEVDKLLNSP 121 Query: 187 S---EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG--- 240 +G + + E + +G++ ++ + + IK + + + +P G Sbjct: 122 DSSKKGLRDKAMLELMYATGVKITELLNLNIYDINLKFNYIKCRGSKKRERI-IPIGSYA 180 Query: 241 ---FMKLLAMTPIGK----ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRK 291 L + P + F+N +M F K A +A ++K ++ +R Sbjct: 181 VKCLKNYLEVRPAINVYNLDYLFLNLKGTQMTRQGFWKIIKFYAKEASIDKEIDSYTLRH 240 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 A GA + G K + + Y+ + + ++ Sbjct: 241 SFAVHLLQNGADIKSVQELLGHKDLAATQIYSSISKKSKIAE 282 >gi|153001893|ref|YP_001367574.1| phage integrase family protein [Shewanella baltica OS185] gi|151366511|gb|ABS09511.1| phage integrase family protein [Shewanella baltica OS185] Length = 338 Score = 142 bits (358), Expect = 8e-32, Method: Composition-based stats. Identities = 63/336 (18%), Positives = 109/336 (32%), Gaps = 33/336 (9%) Query: 7 LPPFVTKERTRHGKIIYYF-RKGHGRRIRLPYPHES-TFIPAYMSALTGSTPKREYINSP 64 LPP V R R GK I Y ++ + ++ AY A+ + + Sbjct: 11 LPPSVYIHR-RAGKPICYVIKRPNSTKVLCKITASKAEVWTAYEKAVAEFSLE------- 62 Query: 65 RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124 T+ L EY SA++ LA ++ + + + G +I HIR ++ Sbjct: 63 ----YTVNRLAMEYLDSANFKELAPRTQRDRDRELNVFSKVFGSMLPDRIEPHHIRRYMD 118 Query: 125 SRK-HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 R + + A L + V+F W + NP V++ K K R T + Sbjct: 119 LRGQSSKTQANHELAAASVMFAWGYERGRCKSNPAKGVKKFKVKAR-DRYITDAEFNALL 177 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243 S + ++A E R D + + + I+ KTG K Sbjct: 178 SCAEI--RLKIACEISYLCAARQGDVLQLTWSQVNEDGLFIQQGKTGKKQIKAWSPRLRK 235 Query: 244 LLAMTPIGKE-----TFFINNDKQKMNATQFSIWFKAKATKAGVNK-------SAHGVRK 291 +A + K+ +K K ++ + H + K Sbjct: 236 AIAEARTLHSGIASIYVINKHPSGKLTQDGLRSAWKRAMAKMEMDYPQIERTFTFHDI-K 294 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 + T E G KT+ Q TY + + Sbjct: 295 AKGVSDFE--GTLSEKQQYSGHKTLAQVNTYDRKVE 328 >gi|107023497|ref|YP_621824.1| site-specific tyrosine recombinase XerD [Burkholderia cenocepacia AU 1054] gi|116690579|ref|YP_836202.1| site-specific tyrosine recombinase XerD [Burkholderia cenocepacia HI2424] gi|170733919|ref|YP_001765866.1| site-specific tyrosine recombinase XerD [Burkholderia cenocepacia MC0-3] gi|105893686|gb|ABF76851.1| Tyrosine recombinase XerD [Burkholderia cenocepacia AU 1054] gi|116648668|gb|ABK09309.1| tyrosine recombinase XerD [Burkholderia cenocepacia HI2424] gi|169817161|gb|ACA91744.1| tyrosine recombinase XerD [Burkholderia cenocepacia MC0-3] Length = 318 Score = 142 bits (358), Expect = 8e-32, Method: Composition-based stats. Identities = 49/268 (18%), Positives = 90/268 (33%), Gaps = 22/268 (8%) Query: 85 GSLAVNSRISFES---YFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSSAIQFLTSM 140 LA N+ ++ F Q + + D + + +R +S+ + L+ Sbjct: 41 HGLARNTLDAYRRDLALFSQWLAATHDAPLDSADEAMVTGYIAARSDGKATSSNRRLSVF 100 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLAF 196 R + WAVR+ + +P L + K+ ++ ++ G+ + R Sbjct: 101 RRYYGWAVREHRASADPTLRITSAKQGARFPSTLSEAQVEALLGAPDIGTPLGLRDRTML 160 Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------ELPDGFMKLLAM 247 E + SGLR S+ + N ++ G+ + + Sbjct: 161 ELMYASGLRVSELVTLKTVEVGLNEGVVRVMGKGSKERLVPFGEVAHGWIERYLRDARPA 220 Query: 248 T--PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGAT 303 + F+ M QF K A +A V + S H +R AT + GA Sbjct: 221 LLGARAADALFVTARGDGMTRQQFWNIIKRHAQQADVRAHLSPHTLRHAFATHLLNHGAD 280 Query: 304 AHELMATYGWKTVDQAETYTKGADRIRL 331 + G + + YT A R RL Sbjct: 281 LRVVQLLLGHSDISTTQIYTHVA-RERL 307 >gi|209694155|ref|YP_002262083.1| site-specific tyrosine recombinase XerD [Aliivibrio salmonicida LFI1238] gi|208008106|emb|CAQ78247.1| tyrosine recombinase XerD [Aliivibrio salmonicida LFI1238] Length = 300 Score = 142 bits (358), Expect = 9e-32, Method: Composition-based stats. Identities = 44/279 (15%), Positives = 102/279 (36%), Gaps = 26/279 (9%) Query: 73 WLISEYRKSAHW--GSLAVNSRISFESYFDQIIRKSGDFDYR-----KITTKHIRSGVES 125 LI + + W L+ N+ S+ + +++ + Y+ + ++ + Sbjct: 8 ALIERFLDTM-WMERGLSENTLSSYRNDLMKLLNWLDENHYKCASISAMGLNEYQAYLVD 66 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----QQ 181 +++ +S + L+++R F++ R++ +P + PK + ++E + + Sbjct: 67 KQYKQTSRARMLSALRRFFQYLHREKIRGDDPTALLMSPKLPQRLPKDLSEEQVNDLLEA 126 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDG 240 + R E L +GLR ++ +++L ++ T K V + + Sbjct: 127 PNVDDPLELRDRAMLELLYATGLRVTELVSLTMENLSLRQGVVRVTGKGDKERLVPMGEN 186 Query: 241 FMKLLAMTPIGK----------ETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAH 287 + + + F + ++M F K A AG++ S H Sbjct: 187 AVYWIQTFLDQGRSTLLGEKSSDVVFPSRRARQMTRQTFWHRIKHYAVIAGIDTDKLSPH 246 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 +R AT + GA + G + + YT A Sbjct: 247 VLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVA 285 >gi|294340185|emb|CAZ88557.1| Tyrosine recombinase xerD [Thiomonas sp. 3As] Length = 317 Score = 142 bits (358), Expect = 9e-32, Method: Composition-based stats. Identities = 56/308 (18%), Positives = 109/308 (35%), Gaps = 33/308 (10%) Query: 59 EYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD---QIIRKSGDFDYRKIT 115 E+ +P TT+ L+ N+ ++ + + S + T Sbjct: 9 EWPPAPEACATTIDRFCDALWLED---GLSPNTLAAYRRDLTLMARWLAFSQRQPLIEAT 65 Query: 116 TKHIRSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173 + +++ + +R + +S+ + L +R ++WA+R+ +P L ++ ++ + Sbjct: 66 LRDVQAYIAARFMQSKATSSNRRLVVLRRFYRWALREHLRTDDPTLQLDTARQPPRRPKT 125 Query: 174 WTKEDMQQFKSF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQK 228 ++ ++ + G + R E L SGLR S+ V + + ++ K Sbjct: 126 LSEAQVEALLAAPEVDTPLGLRDRAMLELLYASGLRVSELVALPVVRVSLDQGVVQIAGK 185 Query: 229 TGTIITVELP----DGFMKLLAMT------PIGKETFFINND-------KQKMNATQFSI 271 G V D L F+ M F + Sbjct: 186 GGKERLVPFGSAAQDWLQNYLRTARHELLQGRDSPFLFVTARSGQSARETTGMTRQMFWM 245 Query: 272 WFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 KA A KAG++ S H +R AT + GA + G + + YT A R Sbjct: 246 RIKAYARKAGIDVPLSPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHIA-RE 304 Query: 330 RLGIKNSR 337 RL ++R Sbjct: 305 RLKTLHAR 312 >gi|229075797|ref|ZP_04208774.1| Tyrosine recombinase xerD [Bacillus cereus Rock4-18] gi|229098560|ref|ZP_04229501.1| Tyrosine recombinase xerD [Bacillus cereus Rock3-29] gi|229104696|ref|ZP_04235358.1| Tyrosine recombinase xerD [Bacillus cereus Rock3-28] gi|229117586|ref|ZP_04246958.1| Tyrosine recombinase xerD [Bacillus cereus Rock1-3] gi|228665906|gb|EEL21376.1| Tyrosine recombinase xerD [Bacillus cereus Rock1-3] gi|228678760|gb|EEL32975.1| Tyrosine recombinase xerD [Bacillus cereus Rock3-28] gi|228684882|gb|EEL38819.1| Tyrosine recombinase xerD [Bacillus cereus Rock3-29] gi|228707349|gb|EEL59545.1| Tyrosine recombinase xerD [Bacillus cereus Rock4-18] Length = 296 Score = 142 bits (358), Expect = 9e-32, Method: Composition-based stats. Identities = 44/271 (16%), Positives = 105/271 (38%), Gaps = 25/271 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFD----YRKITTKHIRSGVESRKHTPSSAI---QFL 137 LA N+ +S+E ++ + + + ++T HI + ++ K S+ + + Sbjct: 16 KGLAKNTVVSYERDLKSYVKYLQNVEQMKTFHEVTRLHIVNFLQYLKENGKSSKTLARHI 75 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPR 193 S+R ++ +R+ V +P + +E P+ + + + + ++++ G + + Sbjct: 76 ASIRSFHQFLLRERAVEHDPSVHIETPQGERKLPKVLSIDEVEALLQTPKMTSAFGIRDK 135 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGK 252 E L +GLR S+ ++ + + ++ K + L + + Sbjct: 136 AMLELLYATGLRVSELIALNLEDVHLTMGFVRCIGKGNKERIIPLGSLATEAIQKYIEKG 195 Query: 253 ----------ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300 + F+N+ +++ F K A +A + K + H +R AT + Sbjct: 196 RRELMGKKVVDALFLNHHGNRLSRQGFWKILKRLAKEANIEKELTPHTLRHSFATHLLEN 255 Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRL 331 GA + G + + YT + RL Sbjct: 256 GADLRAVQEMLGHADISTTQIYTH-VSKARL 285 >gi|261250247|ref|ZP_05942823.1| site-specific recombinase XerD [Vibrio orientalis CIP 102891] gi|260939363|gb|EEX95349.1| site-specific recombinase XerD [Vibrio orientalis CIP 102891] Length = 302 Score = 142 bits (357), Expect = 9e-32, Method: Composition-based stats. Identities = 41/265 (15%), Positives = 95/265 (35%), Gaps = 23/265 (8%) Query: 85 GSLAVNSRISFE----SYFDQIIRKSGDFDYRKIT-TKHIRSGVESRKHTPSSAIQFLTS 139 L+ N+ S+ + + D+ ++ + ++ + + +S + L++ Sbjct: 23 RGLSENTLASYRTDLVKLLRWMSTNNYKLDFISLSGLQEYQAWLVDEGYKQTSRARMLSA 82 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLA 195 +R LF++ R++ +P + PK + ++E + + + Sbjct: 83 IRRLFQYLHREKVRGDDPSALLVSPKLPKRLPKDLSEEQVDALLDAPDPNDAMELRDKAM 142 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLAM------- 247 E L +GLR ++ ++++ ++ T K G V + + + + Sbjct: 143 LELLYATGLRVTELVSLTMENVSLRQGVVRVTGKGGKERLVPMGENAVDWIETFLQQGRS 202 Query: 248 ---TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAG 301 + F + ++M F K A AG++ S H +R AT + G Sbjct: 203 ELLGETTSDVVFPSKRARQMTRQTFWHRIKHYAVVAGIDTEQLSPHVLRHAFATHLLNYG 262 Query: 302 ATAHELMATYGWKTVDQAETYTKGA 326 A + G + + YT A Sbjct: 263 ADLRVVQMLLGHSDLSTTQIYTHVA 287 >gi|253566424|ref|ZP_04843877.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_2_5] gi|251944596|gb|EES85071.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_2_5] gi|301165207|emb|CBW24778.1| putative tyrosine recombinase [Bacteroides fragilis 638R] Length = 317 Score = 142 bits (357), Expect = 9e-32, Method: Composition-based stats. Identities = 47/274 (17%), Positives = 100/274 (36%), Gaps = 23/274 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQII-----RKSGDFDYRKITTKHIRSGVESRK 127 +I +Y++ SL+ N+ ++ + ++++ + + +G+ Sbjct: 16 IIKKYQQYLKLEKSLSKNTLEAYLTDLEKLLSFLSAEGVEILEVSLTDLQRFAAGLHDIG 75 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 S + ++ ++ F + + +Y+ +P +E PK + T E++ + S Sbjct: 76 IHARSQARIISGIKSFFHFLIIADYIEADPSELLEGPKIGFKLPEVLTVEEIDRIISTID 135 Query: 188 ----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT-VELPDGF- 241 EG + R E L GLR S+ + L + IK + G+ V + Sbjct: 136 LSKNEGQRNRAILETLYSCGLRVSELTGLKLSDLYFDEGFIKVEGKGSKQRLVPISPKAI 195 Query: 242 ---------MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVR 290 + + ++ F++ ++ K A AG+ N S H R Sbjct: 196 QEIKLYFLDRNRINIKKDHEDYLFLSRRGTHLSRIMIFHLIKELADMAGITQNISPHTFR 255 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK 324 AT + GA + G +++ E YT Sbjct: 256 HSFATHLLEGGANLRAIQCMLGHESISTTEIYTH 289 >gi|242279423|ref|YP_002991552.1| tyrosine recombinase XerD [Desulfovibrio salexigens DSM 2638] gi|242122317|gb|ACS80013.1| tyrosine recombinase XerD [Desulfovibrio salexigens DSM 2638] Length = 304 Score = 142 bits (357), Expect = 9e-32, Method: Composition-based stats. Identities = 47/274 (17%), Positives = 88/274 (32%), Gaps = 23/274 (8%) Query: 73 WLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131 I Y + L+ NS + S + D KI ++ + + S Sbjct: 13 QWIDRYLEYLLIERGLSENSLSGYLSDLESFQSFLEDRS-AKIEDATSQTLLLYLTYLRS 71 Query: 132 SA------IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 A + L+S+R F + + ++ +P +E PK + + E++ + + Sbjct: 72 KALKSTSLARHLSSLRGFFAFCTSRGFIKEDPATLLENPKLPRKIPEFLSPEEIGRMLAL 131 Query: 186 ----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG 240 G + R E L +G+R S+ ++ + K V + Sbjct: 132 PKLTEKLGFRDRTMLELLYAAGMRVSELINLNIEDFDPQTGVLIIFGKGSKERLVPIHYV 191 Query: 241 FM--------KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVR 290 + F+N + + K A +AG+ +S H R Sbjct: 192 AQNFLNQYIKDWRPAFNPKVKNIFLNRSGKGLTRQGVWKLIKKFALEAGIKRSISPHTFR 251 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK 324 AT D GA + G ++ E YT Sbjct: 252 HSFATHLLDGGADLRTVQLLLGHSDINATEIYTH 285 >gi|229086660|ref|ZP_04218828.1| Tyrosine recombinase xerD [Bacillus cereus Rock3-44] gi|228696607|gb|EEL49424.1| Tyrosine recombinase xerD [Bacillus cereus Rock3-44] Length = 296 Score = 142 bits (357), Expect = 9e-32, Method: Composition-based stats. Identities = 48/271 (17%), Positives = 111/271 (40%), Gaps = 25/271 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFD----YRKITTKHIRSGVESRKHTPSSAI---QFL 137 LA N+ +S+E ++ + + + ++T HI + ++ K S+ + + Sbjct: 16 KGLAKNTVVSYERDLKSYVKYLQNVEQIKTFHEVTRIHIVNFLQYLKENGKSSKTLARHI 75 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF----KSFWSEGSQPR 193 S+R ++ +R+ V +P + +E P+ + + + + +++ K+ + G + + Sbjct: 76 ASIRSFHQFLLRERVVEHDPSVHIETPQGERKLPKVLSVGEVEALLQTPKATSAFGIRDK 135 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLL------- 245 E L +GLR S+ ++ + + ++ K + L + + Sbjct: 136 AMLELLYATGLRVSELIALNLEDVHLTMGFVRCIGKGNKERIIPLGSLATEAIQRYIEKG 195 Query: 246 AMTPIGKET---FFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300 +GK+T F+N+ +++ F K A +A + K + H +R AT + Sbjct: 196 RRELVGKKTVDALFLNHHGNRLSRQGFWKILKRLAKEANIEKELTPHTLRHSFATHLLEN 255 Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRL 331 GA + G + + YT + RL Sbjct: 256 GADLRAVQEMLGHADISTTQIYTH-VSKTRL 285 >gi|228922841|ref|ZP_04086139.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228836896|gb|EEM82239.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 296 Score = 142 bits (357), Expect = 9e-32, Method: Composition-based stats. Identities = 45/271 (16%), Positives = 105/271 (38%), Gaps = 25/271 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFD----YRKITTKHIRSGVESRKHTPSSAI---QFL 137 LA N+ +S+E I+ + + + ++T HI + ++ K S+ + + Sbjct: 16 KGLAKNTVVSYERDLKSYIKYLQNVEQTKTFHEVTRLHIVNFLQYLKENGKSSKTLARHI 75 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPR 193 S+R ++ +R+ V +P + +E P+ + + + + ++++ G + + Sbjct: 76 ASIRSFHQFLLRERAVEHDPSVHIETPQGERKLPKVLSVDEVEALLQTPKMTSAFGIRDK 135 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGK 252 E L +GLR S+ ++ + + ++ K + L + + Sbjct: 136 AMLELLYATGLRVSELIALNLEDVHLTMGFVRCIGKGNKERIIPLGSLATEAIQKYIEKG 195 Query: 253 ----------ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300 + F+N+ +++ F K A +A + K + H +R AT + Sbjct: 196 RRELMGKKVVDALFLNHHGNRLSRQGFWKILKRLAKEANIEKELTPHTLRHSFATHLLEN 255 Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRL 331 GA + G + + YT + RL Sbjct: 256 GADLRAVQEMLGHADISTTQIYTH-VSKTRL 285 >gi|300775316|ref|ZP_07085178.1| tyrosine recombinase XerD [Chryseobacterium gleum ATCC 35910] gi|300506056|gb|EFK37192.1| tyrosine recombinase XerD [Chryseobacterium gleum ATCC 35910] Length = 304 Score = 142 bits (357), Expect = 9e-32, Method: Composition-based stats. Identities = 54/281 (19%), Positives = 97/281 (34%), Gaps = 26/281 (9%) Query: 70 TLKWLISEYRKSAHW-GSLAVNSRISFESYFDQI-------IRKSGDFDYRKITTKHIRS 121 T I ++ + + + N+ ++ ++ + G + Sbjct: 2 TWDEKIKDFEIFLRFERNFSENTLDAYVRDIKKLKDYAEEDLENVGPDSIAYENLQEYIF 61 Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 + +K + S ++++S++ FK+ + EY NP +E PK + D+ + Sbjct: 62 NLSKQKFSERSQARWISSIKAFFKFLLEDEYREDNPAALLEGPKLGLYLPDTLSLPDINK 121 Query: 182 FKSF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII-TVE 236 + G + + E L GLR S+ + ++ IK G V Sbjct: 122 IIAAIEVNTDLGKRNQCIIEVLYGCGLRVSELIDLKISNINFKEQYIKVHGKGNKTRFVP 181 Query: 237 LPDGFMKLLAMTPIG-----------KETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284 L D LL ++T F+N+ M+ + K KAGVNK Sbjct: 182 LADYTADLLDSYIKEVRSKGKINKKYEDTLFLNSRGTSMSRVIVFLIIKELTDKAGVNKK 241 Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 S H R AT GA + G ++ E YT Sbjct: 242 ISPHTFRHSFATHLLQNGADLRYIQEMLGHSSITTTEIYTH 282 >gi|212702793|ref|ZP_03310921.1| hypothetical protein DESPIG_00823 [Desulfovibrio piger ATCC 29098] gi|212673655|gb|EEB34138.1| hypothetical protein DESPIG_00823 [Desulfovibrio piger ATCC 29098] Length = 312 Score = 142 bits (357), Expect = 9e-32, Method: Composition-based stats. Identities = 50/266 (18%), Positives = 92/266 (34%), Gaps = 22/266 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH------IRSGVESRKHTPSSAIQFLT 138 L++ + +S+ + + D T+ + + +RK+ + + L+ Sbjct: 33 RGLSMRTVVSYRQDLENFFLFLDELDAGDKTSLDEHDLFLYLAWLRARKNAGRTLARRLS 92 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRL 194 ++R F++ V + + NP +E P+ +K +M + G + R Sbjct: 93 ALRGFFEYTVEEGLLESNPASLLESPRLPQYLPEVLSKAEMDRLLQLPDMREKCGRRDRC 152 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-ITVELPDGFMKLLAMT----- 248 E L +GLR S+ C V + + G V L + LL Sbjct: 153 LLEMLYAAGLRVSEVCNLLVADVDMQRGLVLVSGKGAKDRLVPLHSLVLDLLQQWLSFWR 212 Query: 249 ---PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGAT 303 F+N + ++ K A AG+ +S H R AT + GA Sbjct: 213 DDFSPQSRYLFLNRSGKGLSRQYVWKMVKKYALLAGIRRSISPHTFRHSFATHLLEGGAD 272 Query: 304 AHELMATYGWKTVDQAETYTK-GADR 328 + G + E YT A+R Sbjct: 273 LRAVQLLLGHADISATEIYTHVQAER 298 >gi|15802459|ref|NP_288485.1| putative integrase for prophage CP-933U [Escherichia coli O157:H7 EDL933] gi|15832027|ref|NP_310800.1| integrase [Escherichia coli O157:H7 str. Sakai] gi|168765371|ref|ZP_02790378.1| site-specific recombinase, phage integrase family [Escherichia coli O157:H7 str. EC4501] gi|168789398|ref|ZP_02814405.1| site-specific recombinase, phage integrase family [Escherichia coli O157:H7 str. EC869] gi|168802960|ref|ZP_02827967.1| site-specific recombinase, phage integrase family [Escherichia coli O157:H7 str. EC508] gi|217329608|ref|ZP_03445687.1| site-specific recombinase, phage integrase family [Escherichia coli O157:H7 str. TW14588] gi|261226506|ref|ZP_05940787.1| putative integrase for prophage CP-933U [Escherichia coli O157:H7 str. FRIK2000] gi|261254686|ref|ZP_05947219.1| putative integrase for prophage CP-933U [Escherichia coli O157:H7 str. FRIK966] gi|12516149|gb|AAG57039.1|AE005423_1 putative integrase for prophage CP-933U [Escherichia coli O157:H7 str. EDL933] gi|13362241|dbj|BAB36196.1| putative integrase [Escherichia coli O157:H7 str. Sakai] gi|189364882|gb|EDU83298.1| site-specific recombinase, phage integrase family [Escherichia coli O157:H7 str. EC4501] gi|189371014|gb|EDU89430.1| site-specific recombinase, phage integrase family [Escherichia coli O157:H7 str. EC869] gi|189375237|gb|EDU93653.1| site-specific recombinase, phage integrase family [Escherichia coli O157:H7 str. EC508] gi|217317376|gb|EEC25805.1| site-specific recombinase, phage integrase family [Escherichia coli O157:H7 str. TW14588] gi|320189647|gb|EFW64304.1| Putative integrase [Escherichia coli O157:H7 str. EC1212] gi|326340080|gb|EGD63885.1| Putative integrase [Escherichia coli O157:H7 str. 1044] gi|326346464|gb|EGD70200.1| Putative integrase [Escherichia coli O157:H7 str. 1125] Length = 340 Score = 142 bits (357), Expect = 9e-32, Method: Composition-based stats. Identities = 60/330 (18%), Positives = 107/330 (32%), Gaps = 30/330 (9%) Query: 6 RLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65 +LPP V + Y K R ES + A L K E + R Sbjct: 12 KLPPKVYPNK-------YSVWKPTSR--------ESVTLTAIEDGLAALWKKYEETVNHR 56 Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125 + T L ++ SA++ L+ ++ + + +++ G + +HIR ++ Sbjct: 57 DRAMTFGRLWEKFLASAYYSELSPRTQKDYLQHQKKLLAVFGKVLADSVKPEHIRRYMDK 116 Query: 126 RKH-TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 R + + A +SM ++ W + YV NPC V + K K T ++ Q S Sbjct: 117 RGEQSKTQANHEKSSMSRVYSWGYERGYVKANPCAGVSKFKAKNRERYV-TDKEYQAVLS 175 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244 +A E R SD + + N+ I+ KTG Sbjct: 176 VAPL--PVFIAMEIAYLCAARVSDVLSLKWEQIGNDGIFIQQGKTGKKQIKAWSPRLQAA 233 Query: 245 LAMTP--IGKETFFINNDKQKMNATQFSIWFKAKATKAG------VNKSAHGVRKFSATI 296 + N + F+ + AG + + H + K Sbjct: 234 IEKAKQLPTSAYVISNQYGNRYMYKGFNEMWVEARNHAGKISGILTDFTFHDL-KAKGIS 292 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGA 326 + ++ + G KT Q Y + Sbjct: 293 DYE--GSSRDKQLFSGHKTEGQVLIYDRKV 320 >gi|189459721|ref|ZP_03008506.1| hypothetical protein BACCOP_00349 [Bacteroides coprocola DSM 17136] gi|189433568|gb|EDV02553.1| hypothetical protein BACCOP_00349 [Bacteroides coprocola DSM 17136] Length = 312 Score = 142 bits (357), Expect = 9e-32, Method: Composition-based stats. Identities = 55/284 (19%), Positives = 111/284 (39%), Gaps = 24/284 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIR---SGVESRK 127 +I +Y++ SL+ N+ ++ + D++ + DY ++T + + +G+ Sbjct: 10 IIIKYKQYLKLEKSLSENTVQAYLTDLDKLFAYLTLENIDYTQVTLQDLETFSAGLHDIG 69 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 P S + L+ +R + + V +Y+ +P +E P+ + E++ Sbjct: 70 IHPRSQARILSGIRSFYHFLVLDDYIQQDPTELLESPQIGKHLPDVLSVEEIDALIGSID 129 Query: 188 ----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT-VELPDGFM 242 EG + E L GLR S+ C + L + IK + G+ V + + Sbjct: 130 RSTREGQRNCAILETLYSCGLRVSELCNLKISDLYFDEGFIKVEGKGSKQRLVPISPRAI 189 Query: 243 KLLA----------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290 + + P ++ FI+ + ++ K A+ G+ K S H R Sbjct: 190 NEIRNYFIERNQGLIKPEYEDFVFISRFGKNISRIMVFHIIKELASLIGLKKKISPHTFR 249 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIK 334 AT + GA + G +++ E YT D+ RL + Sbjct: 250 HSFATHLLEGGANLRAIQCMLGHESIGTTEIYTH-IDKNRLRQE 292 >gi|109900015|ref|YP_663270.1| tyrosine recombinase XerD [Pseudoalteromonas atlantica T6c] gi|109702296|gb|ABG42216.1| tyrosine recombinase XerD [Pseudoalteromonas atlantica T6c] Length = 301 Score = 142 bits (357), Expect = 9e-32, Method: Composition-based stats. Identities = 51/287 (17%), Positives = 101/287 (35%), Gaps = 32/287 (11%) Query: 85 GSLAVNSRISFESYF----DQIIRKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFL 137 L+ N+ ++ S D + +S + I T+ I + R + S+ + L Sbjct: 22 KGLSENTLDAYRSDLTKFSDFLRAQSSVVNLLDIQTEDINQYMAERFDNGLSERSSARCL 81 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPR 193 +S+R + + +P ++ PK + +++ + + + + Sbjct: 82 SSLRRFSGYMLAHGLREDDPVSRMQNPKLSKPLPKTLSEQQVDDLLNAPQTDDPIQLRDK 141 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLL------- 245 E L +GLR ++ V L + ++ T K V L + + L Sbjct: 142 AMLEVLYATGLRVTELVTLRVGQLSISQGVVRVTGKGNKERLVPLGEEALDWLTTYMKEA 201 Query: 246 --AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAG 301 A+ + F +N M F K AT+A + + S H +R AT + G Sbjct: 202 RGALLRNESDVLFPSNRGTIMTRQTFWHRIKFHATQANITSDLSPHTLRHAFATHLLNHG 261 Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348 A + G + + YT A + R+ +V + P Sbjct: 262 ADLRVVQMLLGHSDLSTTQIYTHVA---------TARLQELVAAHHP 299 >gi|254693685|ref|ZP_05155513.1| Phage integrase [Brucella abortus bv. 3 str. Tulya] gi|261213956|ref|ZP_05928237.1| conserved hypothetical protein [Brucella abortus bv. 3 str. Tulya] gi|260915563|gb|EEX82424.1| conserved hypothetical protein [Brucella abortus bv. 3 str. Tulya] Length = 260 Score = 142 bits (357), Expect = 1e-31, Method: Composition-based stats. Identities = 46/251 (18%), Positives = 82/251 (32%), Gaps = 13/251 (5%) Query: 104 RKSGDFDYRKIT-----TKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVR-QEYVAINP 157 +K GD + IR P +A + + + +AV ++ NP Sbjct: 9 KKFGDLSIAQFDLPQKIRPVIRKWRGEFADKPRTADYGMQVLSRVLSYAVDPLGKISQNP 68 Query: 158 CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL 217 C +++ + WT +D+ + K+ S + A + ++GLR D R H+ Sbjct: 69 CEGIKQLYKNDRAAIIWTDQDIARLKTKCSP--EVAWAVDLAAHTGLRAGDLLRLSWSHI 126 Query: 218 QNNIFSIKTQKTG--TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKA 275 +N + T K+ + L LL P N K F F Sbjct: 127 TDNAIILPTGKSRHTKEAVIPLYAELRALLQTIPRRSPIVLTNTRKAPWTVNGFGSSFSD 186 Query: 276 KATKAGV---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 +A + + H R +AT AG + + GW+ + R Sbjct: 187 CREEAKLGDRDLHFHDFRGTAATKFYIAGLSERVIAEIMGWEEETVRNIIRRYVSRTAAI 246 Query: 333 IKNSRRISSVV 343 ++I Sbjct: 247 EATIKQIDEAR 257 >gi|153805793|ref|ZP_01958461.1| hypothetical protein BACCAC_00029 [Bacteroides caccae ATCC 43185] gi|149130470|gb|EDM21676.1| hypothetical protein BACCAC_00029 [Bacteroides caccae ATCC 43185] Length = 316 Score = 142 bits (357), Expect = 1e-31, Method: Composition-based stats. Identities = 50/275 (18%), Positives = 100/275 (36%), Gaps = 24/275 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQI-----IRKSGDFDYRKITTKHIRSGVESRK 127 +I +Y++ SL+ N+ ++ + D++ + + + +G+ Sbjct: 16 IIRKYQQYLKLEKSLSPNTLEAYLTDLDKLMSFLTLEGINVLEVCLSDLQRFTAGLHDIG 75 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 P S + L+ ++ F++ + +Y+ +P +E PK + T E++ + S Sbjct: 76 IHPRSQARILSGIKSFFRFLLMADYLEADPSELLEGPKIGFKLPEVLTVEEIDRIISAVD 135 Query: 188 ----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT-VELPDGFM 242 EG + R E L GLR S+ + L + IK + G+ V + + Sbjct: 136 RSKAEGQRNRAILETLYSCGLRVSELVNLKLSDLYFDEGFIKVEGKGSKQRLVPISPRAI 195 Query: 243 KLLAMTPIG-----------KETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGV 289 + + F + ++ K A AG+ N S H Sbjct: 196 NEIKLYFTDRNRIEVKKEYEDFVFVSQRRGKGLSRIMIFHMIKELAQTAGIIKNISPHTF 255 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 R AT + GA + G +++ E YT Sbjct: 256 RHSFATHLLEGGANLRAIQCMLGHESIATTEIYTH 290 >gi|222151393|ref|YP_002560549.1| site-specific tyrosine recombinase XerD [Macrococcus caseolyticus JCSC5402] gi|222120518|dbj|BAH17853.1| site-specific tyrosine recombinase XerD [Macrococcus caseolyticus JCSC5402] Length = 295 Score = 142 bits (357), Expect = 1e-31, Method: Composition-based stats. Identities = 45/263 (17%), Positives = 95/263 (36%), Gaps = 23/263 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH------IRSGVESRKHTPSSAIQFLT 138 L+ N+ ++ + + + I ++ + + + Sbjct: 16 KGLSENTIAAYRRDLNHYKKFLEESHIGSIDNIDRFTISLFLGKLKDDGKSSKTLARVTA 75 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRL 194 S+R ++A+R++Y +P + +E PK + + T E++ F S G + + Sbjct: 76 SVRGFHQFALREKYAVKDPTIILEPPKFERKLPGILTVEEVDIFLSSPDTSKVTGRRDQA 135 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLAMTPIGK- 252 E L +G+R S+ V + + +K T K V + +KL+ Sbjct: 136 MLELLYATGMRVSELINLDVADVNTIMGFVKVTGKGNKERIVPIGTHMIKLMDAYIANTR 195 Query: 253 ---------ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAG 301 ++ F+N ++M F K ++G+ K + H +R AT + G Sbjct: 196 HKMLKKEMTDSLFLNFHGKRMTRQGFWKIMKQVQAESGIQKKLTPHTLRHSFATHLLENG 255 Query: 302 ATAHELMATYGWKTVDQAETYTK 324 A + G + + YT Sbjct: 256 ADLRAVQEMLGHADISSTQLYTH 278 >gi|47568147|ref|ZP_00238851.1| integrase/recombinase XerD [Bacillus cereus G9241] gi|222097540|ref|YP_002531597.1| site-specific tyrosine recombinase xerd [Bacillus cereus Q1] gi|47555137|gb|EAL13484.1| integrase/recombinase XerD [Bacillus cereus G9241] gi|221241598|gb|ACM14308.1| integrase/recombinase (tyrosine recombinase) [Bacillus cereus Q1] Length = 285 Score = 142 bits (357), Expect = 1e-31, Method: Composition-based stats. Identities = 44/271 (16%), Positives = 104/271 (38%), Gaps = 25/271 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGVESRKHTPSSAI---QFL 137 LA N+ +S+E ++ + + ++T HI + ++ K S+ + + Sbjct: 5 KGLAKNTVVSYERDLKSYVKYLQNVEQAKSFHEVTRLHIVNFLQHLKENGKSSKTLARHI 64 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPR 193 S+R ++ +R+ V +P + +E P+ + + + + ++++ G + + Sbjct: 65 ASIRSFHQFLLRERAVEHDPSVHIETPQGERKLPKVLSVDEVEALLQTPKMTSAFGVRDK 124 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGK 252 E L +GLR S+ ++ + + ++ K + L + + Sbjct: 125 AMLELLYATGLRVSELIALNLEDVHLTMGFVRCIGKGNKERIIPLGSLATEAIQKYIEKG 184 Query: 253 ----------ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300 + F+N+ +++ F K A +A + K + H +R AT + Sbjct: 185 RRELMGKKVVDALFLNHHGNRLSRQGFWKILKRLAKEANIEKELTPHTLRHSFATHLLEN 244 Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRL 331 GA + G + + YT + RL Sbjct: 245 GADLRAVQEMLGHADISTTQIYTH-VSKTRL 274 >gi|52080868|ref|YP_079659.1| site-specific tyrosine recombinase XerD [Bacillus licheniformis ATCC 14580] gi|52786240|ref|YP_092069.1| site-specific tyrosine recombinase XerD [Bacillus licheniformis ATCC 14580] gi|319645175|ref|ZP_07999408.1| RipX protein [Bacillus sp. BT1B_CT2] gi|52004079|gb|AAU24021.1| site-specific integrase/recombinase [Bacillus licheniformis ATCC 14580] gi|52348742|gb|AAU41376.1| RipX [Bacillus licheniformis ATCC 14580] gi|317392984|gb|EFV73778.1| RipX protein [Bacillus sp. BT1B_CT2] Length = 296 Score = 142 bits (357), Expect = 1e-31, Method: Composition-based stats. Identities = 45/264 (17%), Positives = 104/264 (39%), Gaps = 24/264 (9%) Query: 85 GSLAVNSRISFESYFD----QIIRKSGDFDYRKITTKHIRSGVESRKH---TPSSAIQFL 137 L+ N+ +S+E + + + + ++T HI ++ K + + + L Sbjct: 16 RGLSHNTVVSYERDLNSYAAYLEEQEQLSSFDQVTRLHIIQFLKHLKDAGKSGKTVARHL 75 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPR 193 S+R ++ +R++ A +P + +E K + + + ++++ G + + Sbjct: 76 ASIRSFHQFLLREKVTAQDPSVHIESQKTERTLPKVLSLQEVETLLDTPKLTGPFGYRDK 135 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLL------- 245 E L +G+R S+ + + ++ I+ K V L + + Sbjct: 136 AMLELLYATGIRVSEMIALKLSDVHLSMGFIRCFGKGRKERIVPLGEAASHAVGEYLSKA 195 Query: 246 ---AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300 + ++ F+N+ ++M+ F K A +AG+NK + H +R AT + Sbjct: 196 RGKLLKKNTEDALFLNHHGRQMSRQGFWKNLKKIALEAGINKELTPHTLRHSFATHLLEN 255 Query: 301 GATAHELMATYGWKTVDQAETYTK 324 GA + G + + YT Sbjct: 256 GADLRAVQEMLGHADISTTQIYTH 279 >gi|149920280|ref|ZP_01908751.1| integrase/recombinase XerD [Plesiocystis pacifica SIR-1] gi|149818867|gb|EDM78307.1| integrase/recombinase XerD [Plesiocystis pacifica SIR-1] Length = 302 Score = 142 bits (357), Expect = 1e-31, Method: Composition-based stats. Identities = 49/280 (17%), Positives = 106/280 (37%), Gaps = 27/280 (9%) Query: 71 LKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR 126 L+ L+ +Y + +L+ N+ ++ + +++ G +++ + + S Sbjct: 7 LEDLVEDYLQHLKVERNLSPNTLEAYGNDLRRLLDALSGAGVERASQVSPAALLGFLRSL 66 Query: 127 KH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 + S + ++R LF+W ++ V ++P + PK + ++E++ + Sbjct: 67 AEAGLSARSQARRWVAVRGLFRWLRSEQLVEVDPTQGIALPKAVNKLPELLSREEVVRLI 126 Query: 184 SF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELP 238 + G + EF+ +G R S++C + L + + T K V L Sbjct: 127 AAPGVDTPLGLRDTALLEFMYATGCRVSEACDLELSSLHLDQGLVVLTGKGSKQRMVPLG 186 Query: 239 D------------GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-- 284 D G +L+A P F+N +++ + A AG+ + Sbjct: 187 DCALVALLAWLEEGRPELVARAPREA-HVFVNKRGSRLSRQGCFFRLRQHAVSAGITRDI 245 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 S H +R AT + GA + G + + YT Sbjct: 246 SPHKLRHSFATHLIEGGADLRAVQTLLGHADISTTQVYTH 285 >gi|149910171|ref|ZP_01898817.1| tyrosine recombinase [Moritella sp. PE36] gi|149806757|gb|EDM66721.1| tyrosine recombinase [Moritella sp. PE36] Length = 296 Score = 142 bits (357), Expect = 1e-31, Method: Composition-based stats. Identities = 45/287 (15%), Positives = 98/287 (34%), Gaps = 24/287 (8%) Query: 74 LISEYRKSA-HWGSLAVNSRISFESYFDQ-----IIRKSGDFDYRKITTKHIRSGVESRK 127 +I ++ H L+ N+ S+ + +Q + K ++ + + Sbjct: 6 IIEQFLDIMWHERGLSDNTLSSYRNDLNQYHHWLVQHKQQLLTVDRLEIQAFMASRFDLG 65 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-- 185 + SS + L+++R +++ R++ +P + PK ++ ++ + Sbjct: 66 YKASSTARQLSAIRRFYQYLYREQMRDDDPTALLISPKLPQRLPDDLSEAEVNALLAAPE 125 Query: 186 --WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFM 242 + + E L +GLR S+ ++ + ++ T K G V + + + Sbjct: 126 LDDPIQLRDKAMMEVLYATGLRVSELVGLSMESVSLRQGLVRVTGKGGKERLVPMGEEAV 185 Query: 243 KLLAMTPIGK----------ETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVR 290 + F + M F K + AG+ + S H +R Sbjct: 186 YWTERFIAEGRATLLKGLTSDVVFPSRRGNFMTRQTFWHRLKHYSQVAGITTHLSPHTLR 245 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 AT + GA + G + + YT A RL +S Sbjct: 246 HAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVAT-ARLEQLHSE 291 >gi|319775822|ref|YP_004138310.1| Site-specific recombinase XerD [Haemophilus influenzae F3047] gi|329123666|ref|ZP_08252226.1| tyrosine recombinase XerD [Haemophilus aegyptius ATCC 11116] gi|317450413|emb|CBY86629.1| Site-specific recombinase XerD [Haemophilus influenzae F3047] gi|327469865|gb|EGF15330.1| tyrosine recombinase XerD [Haemophilus aegyptius ATCC 11116] Length = 297 Score = 142 bits (357), Expect = 1e-31, Method: Composition-based stats. Identities = 47/284 (16%), Positives = 97/284 (34%), Gaps = 27/284 (9%) Query: 73 WLISEYRKSAHW--GSLAVNSRISFESYFDQIIRKSGD-----FDYRKITTKHIRSGVES 125 LI + W L+ N+ S+ + + + Sbjct: 5 ALIDLFLNEY-WIEKGLSENTVQSYRLDLTALCDWLDKNGLSLETLDAVDLQGFLGERLE 63 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS- 184 + + +S + L++MR LF++ R++Y +P + PK + + T++ + + Sbjct: 64 KGYKATSTARMLSAMRKLFQYLYREKYRVDDPSAVLSSPKLPSRLPKYLTEQQVSDLLNT 123 Query: 185 ---FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG 240 + + E L +GLR ++ ++++ ++ K V + + Sbjct: 124 PDVEVPLELRDKAMLELLYATGLRVTELVSLTIENMSVQQGVVRVIGKGNKERIVPMGEE 183 Query: 241 FMKL-----LAMTPI-----GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAH 287 L P+ + F + Q+M F K A A ++ S H Sbjct: 184 AAYWVRQFMLYGRPVLLNGQSSDVVFPSQRAQQMTRQTFWHRVKHYAILADIDAEALSPH 243 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 +R AT + GA + G + + YT A + RL Sbjct: 244 VLRHAFATHLVNHGADLRVVQMLLGHTDLSTTQIYTHVA-KERL 286 >gi|332169022|gb|AEE18277.1| tyrosine recombinase XerD [Krokinobacter diaphorus 4H-3-7-5] Length = 300 Score = 142 bits (357), Expect = 1e-31, Method: Composition-based stats. Identities = 48/272 (17%), Positives = 93/272 (34%), Gaps = 25/272 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFD----YRKITTKHIRSGVE--SRKHTPSSAIQFLT 138 L+ N+ ++ ++ R D IT I+ + +++ S + ++ Sbjct: 18 RGLSENTIDNYARDLKKLTRHLEQLDSAPDPITITKDDIQDFIYTIAKEVQARSQARIIS 77 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRL 194 ++ F + + ++Y NP +E P+ + +E++ + +G + R Sbjct: 78 GLKGFFNYLIFEDYRKDNPLDLIESPRLGRKLPDTLAEEEIDALITAIDLSNPQGERNRA 137 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPD-----------GFM 242 E L GLR ++ + L I K V + + Sbjct: 138 MLETLYSCGLRVTELISLKLSDLYFEEGFINVIGKGDKQRFVPISEHTQKYINIYRNEIR 197 Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADA 300 + P + F+N +++ K A KAG+ KS H R AT Sbjct: 198 THTDVKPEYVDILFLNRRGRQLTRAMIFTIIKDLAVKAGIKKSISPHTFRHSFATHLLQN 257 Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRLG 332 GA + G +++ E Y DR L Sbjct: 258 GADLRSIQQMLGHESITTTEIYMH-VDRSDLA 288 >gi|160876615|ref|YP_001555931.1| integrase family protein [Shewanella baltica OS195] gi|160862137|gb|ABX50671.1| integrase family protein [Shewanella baltica OS195] gi|315268811|gb|ADT95664.1| integrase family protein [Shewanella baltica OS678] Length = 338 Score = 142 bits (357), Expect = 1e-31, Method: Composition-based stats. Identities = 62/336 (18%), Positives = 107/336 (31%), Gaps = 33/336 (9%) Query: 7 LPPFVTKERTRHGKIIYYF-RKGHGRRIRLPYPHES-TFIPAYMSALTGSTPKREYINSP 64 LPP V R R GK I Y ++ + ++ AY A+ Sbjct: 11 LPPSVYIHR-RAGKPICYVIKRPNSTKVLCKITASKAEVWTAYEKAVA-----------E 58 Query: 65 RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124 T+ L EY SA++ LA ++ + + + G +I HIR ++ Sbjct: 59 LSLEYTVNRLAMEYLDSANFKELAPRTQRDRDRELNVFSKVFGSMLPDRIEPHHIRRYMD 118 Query: 125 SRK-HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 R + + A L + V+F W + NP +++ K K R T + Sbjct: 119 LRGQSSKTQANHELAAASVMFAWGYERGRCKSNPAKGIKKFKVKAR-DRYITDSEFDALL 177 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243 S + ++A E R D + + + I+ KTG K Sbjct: 178 SCAEI--RLKIACEISYLCAARQGDVLQLTWSQVNEDGLFIQQGKTGKKQIKAWSPRLRK 235 Query: 244 LLAMTPIGKE-----TFFINNDKQKMNATQFSIWFKAKATKAGVNK-------SAHGVRK 291 +A + K+ +K K ++ + H + K Sbjct: 236 AIAEARTLHSGIASIYVINKHPSGKLTQDGLRSAWKRAMAKMEMDYPQIERTFTFHDI-K 294 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 + T E G KT+ Q TY + + Sbjct: 295 AKGVSDFE--GTLSEKQQYSGHKTLAQVNTYDRKVE 328 >gi|227328397|ref|ZP_03832421.1| site-specific tyrosine recombinase XerD [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 299 Score = 141 bits (356), Expect = 1e-31, Method: Composition-based stats. Identities = 44/280 (15%), Positives = 98/280 (35%), Gaps = 26/280 (9%) Query: 72 KWLISEYRKSAHW--GSLAVNSRISFESYFDQIIR-----KSGDFDYRKITTKHIRSGVE 124 + LI ++ A W +LA N+ S+ + ++G + + + + Sbjct: 6 QALIEQFL-DALWLERNLAENTLASYRLDLRTLAEWVAHHENGLLQAQSLDLQAFLADRV 64 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 + +S+ + L++MR F++ R++ + +P + PK + ++ + + Sbjct: 65 EGGYKATSSARLLSAMRRFFQYLYREKLRSDDPSAVLSSPKLPQRLPKDLSEAQVDALLN 124 Query: 185 F----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPD 239 + + E L +GLR S+ + + ++ K V L + Sbjct: 125 APSIEQPLELRDKAMLEVLYATGLRVSELVSLTMSDVSLRQGVVRVLGKGNKERLVPLGE 184 Query: 240 GFMKLLAMTPIGKETFFIN----------NDKQKMNATQFSIWFKAKATKAGVN---KSA 286 + + + +N + ++M F K A A ++ S Sbjct: 185 EAVYWIEYYLEHGRPWLLNGQTLDVLFPSSRARQMTRQTFWHRIKHYAVLASIDSEKLSP 244 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 H +R AT + GA + G + + YT A Sbjct: 245 HVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA 284 >gi|228916729|ref|ZP_04080294.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228935411|ref|ZP_04098229.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228824163|gb|EEM69977.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228842916|gb|EEM87999.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 296 Score = 141 bits (356), Expect = 1e-31, Method: Composition-based stats. Identities = 45/271 (16%), Positives = 103/271 (38%), Gaps = 25/271 (9%) Query: 85 GSLAVNSRISFES----YFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI---QFL 137 LA N+ +S+E Y + + + ++T HI + ++ K S+ + + Sbjct: 16 KGLAKNTVVSYERDLKSYVKYLQKVEQAKSFHEVTRLHIVNFLQHLKENGKSSKTLARHI 75 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPR 193 S+R ++ +R+ V +P + +E P+ + + + + +++ G + + Sbjct: 76 ASIRSFHQFLLRERAVEHDPSVHIETPQGERKLPKVLSVNEVEALLQTPKMTSAFGVRDK 135 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLAMTPIGK 252 E L +GLR S+ ++ + + ++ K + L + + Sbjct: 136 AMLELLYATGLRVSELIALNLEDVHLTMGFVRCVGKGNKERIIPLGSLATEAIQKYIEKG 195 Query: 253 ----------ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300 + F+N+ +++ F K A +A + K + H +R AT + Sbjct: 196 RRELMGKKVVDALFLNHHGNRLSRQGFWKILKRLAKEANIEKELTPHTLRHSFATHLLEN 255 Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRL 331 GA + G + + YT + RL Sbjct: 256 GADLRAVQEMLGHADISTTQIYTH-VSKTRL 285 >gi|229550039|ref|ZP_04438764.1| site-specific DNA tyrosine recombinase, XerD [Enterococcus faecalis ATCC 29200] gi|255972820|ref|ZP_05423406.1| phage integrase [Enterococcus faecalis T1] gi|257089862|ref|ZP_05584223.1| phage integrase [Enterococcus faecalis CH188] gi|257422642|ref|ZP_05599632.1| phage integrase [Enterococcus faecalis X98] gi|312951470|ref|ZP_07770366.1| tyrosine recombinase XerD [Enterococcus faecalis TX0102] gi|229304845|gb|EEN70841.1| site-specific DNA tyrosine recombinase, XerD [Enterococcus faecalis ATCC 29200] gi|255963838|gb|EET96314.1| phage integrase [Enterococcus faecalis T1] gi|256998674|gb|EEU85194.1| phage integrase [Enterococcus faecalis CH188] gi|257164466|gb|EEU94426.1| phage integrase [Enterococcus faecalis X98] gi|310630436|gb|EFQ13719.1| tyrosine recombinase XerD [Enterococcus faecalis TX0102] gi|315152507|gb|EFT96523.1| tyrosine recombinase XerD [Enterococcus faecalis TX0031] gi|315155785|gb|EFT99801.1| tyrosine recombinase XerD [Enterococcus faecalis TX0043] gi|315158048|gb|EFU02065.1| tyrosine recombinase XerD [Enterococcus faecalis TX0312] gi|315577730|gb|EFU89921.1| tyrosine recombinase XerD [Enterococcus faecalis TX0630] gi|327535109|gb|AEA93943.1| tyrosine recombinase XerD [Enterococcus faecalis OG1RF] Length = 296 Score = 141 bits (356), Expect = 1e-31, Method: Composition-based stats. Identities = 47/274 (17%), Positives = 107/274 (39%), Gaps = 27/274 (9%) Query: 85 GSLAVNSRISFESYFDQ---IIRKSG----DFDYRKITTKHIRSGVESRKHTPSSAIQFL 137 L+ N+R S+E + +++ G D R + T+ ++S E ++ + +S I+ + Sbjct: 16 RGLSNNTRRSYERDLKKYVAFLQEQGLHSWDEVDRYMITEFLQSLHEEQQAS-ASVIRMI 74 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPR 193 +S+R ++ ++ NP ++ PK+ + + +++ + G + R Sbjct: 75 SSLRGFHQFLRQERLSEHNPMQHIDSPKKVQKLPSTLSVDEVTRLIETPDTSKPLGMRNR 134 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMT---- 248 E + +GLR S+ + L +I ++T K + L D ++ + Sbjct: 135 AILEVMYATGLRVSELIEIKLGDLHLSIGLLQTIGKGDKERIIPLGDYAIQWIERYMNEA 194 Query: 249 -------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299 + F+N+ + ++ K +A + K + H +R AT + Sbjct: 195 RPQLIKNHPNETHLFVNHHGEPLSRQGIWKNLKQIVREARIEKNITPHTLRHSFATHLLE 254 Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 GA + G + + YT + R+ Sbjct: 255 NGADLRIVQELLGHADISTTQIYTH-ITKQRMAD 287 >gi|254508834|ref|ZP_05120944.1| tyrosine recombinase XerD [Vibrio parahaemolyticus 16] gi|219548220|gb|EED25235.1| tyrosine recombinase XerD [Vibrio parahaemolyticus 16] Length = 298 Score = 141 bits (356), Expect = 1e-31, Method: Composition-based stats. Identities = 45/280 (16%), Positives = 104/280 (37%), Gaps = 26/280 (9%) Query: 72 KWLISEYRKSAHW--GSLAVNSRISFESYFDQIIRKSGDFDYRKITT-----KHIRSGVE 124 + L+ ++ A W L+ N+ S+ + ++++ +YR + ++ + Sbjct: 5 QGLVEQFL-DAMWMERGLSENTLASYRNDLSKLLQWMSKHNYRLDFISLSGLQEYQTWLA 63 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 + +S + L+++R LF++ R++ A +P + PK + ++ + Sbjct: 64 DEGYKQTSRARMLSAIRRLFQYLHREKIRADDPSALLVSPKLPKRLPKDLSEAQVDALLD 123 Query: 185 FWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPD 239 + + E L +GLR ++ ++++ ++ T K G V + + Sbjct: 124 APDPNDPMELRDKAMLELLYATGLRVTELVSLTMENISLRQGVVRVTGKGGKERLVPMGE 183 Query: 240 GFMKLLAMTPIGK----------ETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSA 286 + + + F + ++M F K A AG++ S Sbjct: 184 NAVDWIETFLEQGRSELLGENTSDVVFPSKRARQMTRQTFWHRIKHYAVIAGIDSEKLSP 243 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 H +R AT + GA + G + + YT A Sbjct: 244 HVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVA 283 >gi|148981819|ref|ZP_01816536.1| site-specific tyrosine recombinase XerD [Vibrionales bacterium SWAT-3] gi|145960727|gb|EDK26067.1| site-specific tyrosine recombinase XerD [Vibrionales bacterium SWAT-3] Length = 304 Score = 141 bits (356), Expect = 1e-31, Method: Composition-based stats. Identities = 46/278 (16%), Positives = 102/278 (36%), Gaps = 26/278 (9%) Query: 74 LISEYRKSAHW--GSLAVNSRISFESYFDQIIRKSGDFDYRKITT-----KHIRSGVESR 126 L+ ++ A W L+ N+ +S+ + +++ +YR + +S + Sbjct: 13 LVEQFL-DAMWMERGLSENTLVSYRTDLSKLLTWMEQNNYRLDFISLSGLQDYQSWLVDA 71 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF- 185 +S + L+++R LF++ R++ A +P + PK + ++E + Sbjct: 72 DFKQTSRARMLSAIRRLFQYLHREKVRADDPSALLISPKLPQRLPKDLSEEQVDALLDAP 131 Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGF 241 + + E L +GLR ++ ++++ ++ K G V + + Sbjct: 132 DPNDPIELRDKAMLELLYATGLRVTELVSLTMENISLRQGVVRVIGKGGKERLVPMGENA 191 Query: 242 MKLLAMTPIGK----------ETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHG 288 + + + F + ++M F K A AG++ S H Sbjct: 192 VDWIESFIEQGRPQLLGENSSDVVFPSKRAKQMTRQTFWYRIKHYAVIAGIDTELLSPHV 251 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 +R AT + GA + G + + YT A Sbjct: 252 LRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVA 289 >gi|167756895|ref|ZP_02429022.1| hypothetical protein CLORAM_02444 [Clostridium ramosum DSM 1402] gi|167703070|gb|EDS17649.1| hypothetical protein CLORAM_02444 [Clostridium ramosum DSM 1402] Length = 302 Score = 141 bits (356), Expect = 1e-31, Method: Composition-based stats. Identities = 46/286 (16%), Positives = 94/286 (32%), Gaps = 33/286 (11%) Query: 68 PTTLKWLISEYRKSAHWGS-LAVNSRISFESYFDQI--------IRKSGDFDYRKITTKH 118 TTL +Y + A + S++ D I D Y + + Sbjct: 2 KTTLDKYFRQYLDYLQYQRHYADKTIESYKRQIDHFKQFLIEESIDDYNDVSYAML--RG 59 Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 + + + + ++ L+++R F + +++E + NP L +E K E+ Sbjct: 60 YLTKLYEKNLSKTTINHKLSALRSFFNYLLKEELINDNPFLLIESQKVAKRNPDFLFPEE 119 Query: 179 M----QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTII 233 + ++ G + + E + SGLRCS+ + ++ N + K Sbjct: 120 ILGLLDSIETKDDLGIRNKAMMELMYASGLRCSEVVNLQLSNIDFNQMVLFIHGKGNKDR 179 Query: 234 TVELPD-----------GFMKLLAMTPIGKETFFINNDKQKMNATQFSIW----FKAKAT 278 V D + L + G F+N + + + Sbjct: 180 YVPFHDYAGEWLIKYIQEARENLMIKNEGHNFVFVNKFGNPLTNRGVENIVDRIMRLYDS 239 Query: 279 KAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 ++ H +R AT +AGA + G + + + YT Sbjct: 240 TKKIH--PHTIRHSFATHLLNAGADIRTVQELLGHENLSTTQIYTH 283 >gi|212636945|ref|YP_002313470.1| Phage integrase:Phage integrase,SAM-like protein [Shewanella piezotolerans WP3] gi|212558429|gb|ACJ30883.1| Phage integrase:Phage integrase,SAM-like protein [Shewanella piezotolerans WP3] Length = 300 Score = 141 bits (356), Expect = 1e-31, Method: Composition-based stats. Identities = 46/275 (16%), Positives = 98/275 (35%), Gaps = 23/275 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYR-----KITTKHIRSGVESRKHTPSSAIQFLTS 139 L+ N+ ++ + R + + + + + +S+ + ++S Sbjct: 22 KGLSDNTLSAYRTDLRHFDRHQQLKGLKLVESSQFDVRDYLATRFDKGFAKTSSARMMSS 81 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK----SFWSEGSQPRLA 195 +R F + V + ++ +P +E PK + +++D+ + + + + Sbjct: 82 LRRFFGYLVVNKQISTDPMALLESPKLARKLPDSLSEDDIDRLLSEPQADDPIECRDKAM 141 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPD----------GFMKL 244 E L +GLR S+ ++ L ++ K G V L + F ++ Sbjct: 142 LELLYATGLRVSELVGLTMEQLSLRQGLVRIVGKGGKERLVPLGELAVGEVENYLKFARV 201 Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGA 302 + + F + Q+M F K A +A + S H +R AT + GA Sbjct: 202 ELLKGKQSDVLFPSKRAQQMTRQTFWHRIKLYALRANISTELSPHTLRHAFATHLLNHGA 261 Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 + G + + YT A RL +S Sbjct: 262 DLRVVQLLLGHSDLSTTQIYTHVAT-ARLASLHSE 295 >gi|311745586|ref|ZP_07719371.1| tyrosine recombinase XerD [Algoriphagus sp. PR1] gi|126578148|gb|EAZ82368.1| tyrosine recombinase XerD [Algoriphagus sp. PR1] Length = 301 Score = 141 bits (356), Expect = 1e-31, Method: Composition-based stats. Identities = 51/281 (18%), Positives = 108/281 (38%), Gaps = 26/281 (9%) Query: 70 TLKWLISEYRKSAHW-GSLAVNSRISFESYFDQI----IRKSGDFDYRKITTKHIRSGVE 124 T + I ++R SL+ NS ++ +++ + D + + +H+R V Sbjct: 4 TWENHIKQFRHYLKLERSLSENSIEAYTRDVEKLAAYSSKNFPDKNPLNLELEHLRKFVN 63 Query: 125 SRKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 + + + ++ ++ +++ + ++ + +P +E PK + + +++ Q Sbjct: 64 ELAQLEISDYTQARIISGIKAFYRFLMYEDKITEDPAQLLEAPKLGRKLPDTLSYQEIVQ 123 Query: 182 FKSFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE 236 EG + R E L SGLR S+ + +I ++ K V Sbjct: 124 LLEAIPLGEPEGHRNRAMLEMLYSSGLRVSELIELKKGQIFEDIGFLRVIGKGNKERLVP 183 Query: 237 LPDGFMKLL-----------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284 + +K L ++ +E F+N +K++ + K A AG+ K Sbjct: 184 IGKDALKYLNIYKDEVRVHQSIAKGHEEFVFLNRRGKKLSRVMIFLIIKKTAELAGIEKN 243 Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 S H R AT + GA + G +++ E YT Sbjct: 244 ISPHTFRHSFATHLIEGGADLRAVQEMLGHESITTTEIYTH 284 >gi|119478678|ref|ZP_01618568.1| tyrosine recombinase [marine gamma proteobacterium HTCC2143] gi|119448404|gb|EAW29656.1| tyrosine recombinase [marine gamma proteobacterium HTCC2143] Length = 300 Score = 141 bits (356), Expect = 1e-31, Method: Composition-based stats. Identities = 51/280 (18%), Positives = 101/280 (36%), Gaps = 25/280 (8%) Query: 74 LISEYRKSAHW--GSLAVNSRISFESYFDQIIRKSGD-----FDYRKITTKHIRSGVESR 126 LI + W ++ N+ S+ Q + D RK + + R Sbjct: 10 LIDAFL-DGIWMERGVSENTLSSYRQDLMQFNQWLLDQQTTMLAVRKNDIEAYLAFRLMR 68 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF- 185 K + S + L+ +R +++ +R+ ++++P L ++ PK + +++D++ + Sbjct: 69 KISARSTARLLSCLRGFYQYQLRESRISLDPTLDIDSPKMGRPLPKSLSEQDVEALLNAP 128 Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-----EL 237 + + E L SGLR ++ V L N ++ G+ + E Sbjct: 129 DTDEPLELRDKAMLELLYASGLRVTELITLQVGQLSVNQGVVRVMGKGSKERLVPTGEEA 188 Query: 238 PDGFMKLLA------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGV 289 D + + + +T F + M F K A +AG+ S H + Sbjct: 189 LDWLQRYMKDGRPALLGARMSDTMFPSRRGAVMTRQTFWYRIKIYAQRAGIRQSLSPHTL 248 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 R AT + GA + G + + YT A Sbjct: 249 RHAFATHLINHGADLRVVQLLLGHSDLSTTQIYTHVAKER 288 >gi|218708546|ref|YP_002416167.1| site-specific tyrosine recombinase XerD [Vibrio splendidus LGP32] gi|218321565|emb|CAV17517.1| Tyrosine recombinase xerD [Vibrio splendidus LGP32] Length = 320 Score = 141 bits (356), Expect = 1e-31, Method: Composition-based stats. Identities = 44/278 (15%), Positives = 101/278 (36%), Gaps = 26/278 (9%) Query: 74 LISEYRKSAHW--GSLAVNSRISFESYFDQIIRKSGDFDYRKITT-----KHIRSGVESR 126 L+ ++ A W L+ N+ +S+ + +++ +YR + + + Sbjct: 29 LVEQFL-DAMWMERGLSENTLVSYRTDLSKLLTWMEKNNYRLDFISLSGLQDYQGWLADA 87 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF- 185 +S + L+++R LF++ R++ A +P + PK + ++E + Sbjct: 88 DFKQTSRARMLSAIRRLFQYLHREKVRADDPSALLISPKLPKRLPKDLSEEQVDSLLEAP 147 Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGF 241 + + E L +GLR ++ ++++ ++ K G V + + Sbjct: 148 DPNDPIELRDKAMLELLYATGLRVTELVSLTMENISLRQGVVRVIGKGGKERLVPMGENA 207 Query: 242 MKLLAM----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHG 288 + + + F + ++M F K + AG++ S H Sbjct: 208 VDWIETFIEQGRPQLLGDNSSDVVFPSKRAKQMTRQTFWYRIKHYSVIAGIDTELLSPHV 267 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 +R AT + GA + G + + YT A Sbjct: 268 LRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVA 305 >gi|197105650|ref|YP_002131027.1| phage integrase [Phenylobacterium zucineum HLK1] gi|196479070|gb|ACG78598.1| phage integrase [Phenylobacterium zucineum HLK1] Length = 420 Score = 141 bits (356), Expect = 1e-31, Method: Composition-based stats. Identities = 65/359 (18%), Positives = 104/359 (28%), Gaps = 43/359 (11%) Query: 9 PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR--- 65 +V + + G I Y RK +RLP AL + P Sbjct: 2 KYVNRVQRPDGTIQLYLRKRGLPAVRLPDDLPP-------RALEQHVARLIRDLVPGGTG 54 Query: 66 KKPTTLKWLISEY-RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI-RSGV 123 TL + Y +S + +LA +++ + + G T + R Sbjct: 55 ALRGTLAAAVRVYELESPEFRALAKSTQYEYRLILKEFDEDLGSVAISAFTPAFVDRLKT 114 Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINP---CLSVERPKRKTEGIRPWTKEDMQ 180 K +A L ++ + K + + +P V RP+ E W+ E + Sbjct: 115 SWAKRGYRAANLRLQVLKNVLKPCLVSGLLEKDPFPLVGQVRRPRALREPHLIWSDEMFE 174 Query: 181 QFKSFWSEGSQPRLAFEFLL--YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238 + +P LA + Y G R D QN F + K + V Sbjct: 175 VVAQAALDAGKPGLARALAIARYVGARRGDLVAIPRTARQNGRFRFMSGKRRVRVDVAED 234 Query: 239 DGFMKLLAMTP-------------------IGKETFFINNDKQKMNATQFS-------IW 272 + L TP T N + + Sbjct: 235 PQLTRWLERTPDAPEQRPRRGRKVPPGAEPAATTTIVYNVAGRPYTEDGLALELRKLLAR 294 Query: 273 FKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 A+ HG+R A AG + E A G + Y + ADR+RL Sbjct: 295 LHAQGRIDSDRYDLHGLRHTCGVELALAGCSDAEGAAMMGHGSPSSFVQYRRQADRVRL 353 >gi|188026224|ref|ZP_02961334.2| hypothetical protein PROSTU_03358 [Providencia stuartii ATCC 25827] gi|188022113|gb|EDU60153.1| hypothetical protein PROSTU_03358 [Providencia stuartii ATCC 25827] Length = 307 Score = 141 bits (356), Expect = 1e-31, Method: Composition-based stats. Identities = 50/284 (17%), Positives = 100/284 (35%), Gaps = 27/284 (9%) Query: 74 LISEYRKSAHW--GSLAVNSRISFE---SYFDQIIR--KSGDFDYRKITTKHIRSGVESR 126 LI ++ + W LA N+ S+ D+ + + + I + + Sbjct: 16 LIEQFLDTI-WLEQDLAENTLASYRLDLQLLDKWLEANQLDLESVQSIDLQSFLAERIEG 74 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ----QF 182 + +S+ + L++MR LF++ R++ +P + PK + +++ ++ Sbjct: 75 GYKAASSARLLSAMRRLFQYFYREKIRLDDPSAVIAAPKIPQRLPKDLSEQQVEDLLNAP 134 Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDG- 240 + + + E L GLR S+ + I+ G + L + Sbjct: 135 ATEDPLELRDKAMLEVLYACGLRVSELVGLTFSDISLRQGVIRVVGKGNKERLIPLGEEA 194 Query: 241 -------FMKLLAMTPIGK--ETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHG 288 + GK + F + KM F K A A ++ S H Sbjct: 195 IYWVEKYLEEGRPDLLNGKASDVLFPSKRGTKMTRQTFWHRIKHYAVIANIDSEALSPHV 254 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRL 331 +R AT + GA + G + + YT A +R+R+ Sbjct: 255 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRM 298 >gi|257784507|ref|YP_003179724.1| integrase family protein [Atopobium parvulum DSM 20469] gi|257473014|gb|ACV51133.1| integrase family protein [Atopobium parvulum DSM 20469] Length = 305 Score = 141 bits (356), Expect = 1e-31, Method: Composition-based stats. Identities = 55/279 (19%), Positives = 106/279 (37%), Gaps = 27/279 (9%) Query: 85 GSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGVESRKHTPSSA---IQFLTS 139 +L+ N+ S+++ + + D ++ K++R + K SA + L++ Sbjct: 22 RNLSENTLRSYQTDLLSFAQWCSRENVDLTQVDHKNLRLYLAYLKQAQYSAKTLNRHLSA 81 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRLA 195 +R +KW R++ +A +P L++ P+ T D+ + G + R Sbjct: 82 LRGFYKWMQREKLIATDPALALSNPRAPRNLPHTMTDSDVNRLLESCDVSTAAGLRDRAF 141 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVEL----PDGFMKLLA---- 246 EFL +G R S+ ++ + +++ K V L + K L Sbjct: 142 LEFLYATGARISEVATLRLEQVDLQNGTVRLFGKGSKERIVPLYESAIEWLKKYLRSSRP 201 Query: 247 ------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISA 298 T FI+ M+A F + T AG++ S H +R AT Sbjct: 202 TLLLKDKTGRVHSALFISVRGNNMSADSLRKVFSSYLTAAGLDSSLSPHAMRHTYATELL 261 Query: 299 DAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNS 336 GA + G +++ + YT DR++ K + Sbjct: 262 GGGADLRIVQELLGHESLSTTQVYTHLSVDRLKEAAKAA 300 >gi|221310269|ref|ZP_03592116.1| site-specific tyrosine recombinase XerD [Bacillus subtilis subsp. subtilis str. 168] gi|221314592|ref|ZP_03596397.1| site-specific tyrosine recombinase XerD [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221319515|ref|ZP_03600809.1| site-specific tyrosine recombinase XerD [Bacillus subtilis subsp. subtilis str. JH642] gi|221323791|ref|ZP_03605085.1| site-specific tyrosine recombinase XerD [Bacillus subtilis subsp. subtilis str. SMY] gi|255767509|ref|NP_390232.2| site-specific tyrosine recombinase XerD [Bacillus subtilis subsp. subtilis str. 168] gi|321311827|ref|YP_004204114.1| site-specific tyrosine recombinase XerD [Bacillus subtilis BSn5] gi|251757430|sp|P46352|XERD_BACSU RecName: Full=Tyrosine recombinase xerD gi|225185137|emb|CAB14283.2| site-specific tyrosine recombinase for chromosome partitioning [Bacillus subtilis subsp. subtilis str. 168] gi|320018101|gb|ADV93087.1| site-specific tyrosine recombinase XerD [Bacillus subtilis BSn5] Length = 296 Score = 141 bits (356), Expect = 1e-31, Method: Composition-based stats. Identities = 45/264 (17%), Positives = 98/264 (37%), Gaps = 24/264 (9%) Query: 85 GSLAVNSRISFESYFD----QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI---QFL 137 L+ N+ +S+E + D+ +T HI ++ K + S + L Sbjct: 16 RGLSQNTIVSYERDLKSYSLYLTETLHVTDWNHVTRIHIIQYLKHLKDSGKSGKTSARHL 75 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPR 193 S+R ++ +R++ +P + +E K + + ++++ G + + Sbjct: 76 ASIRSFHQFLLREKVTDKDPSVHIETQKTERALPKVLALNEVERLLDTPKLTSPFGYRDK 135 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLL---AMTP 249 E L +G+R S+ + ++ I+ K V + + + Sbjct: 136 AMLELLYATGIRVSEMIELKTADVHLSMGFIRCFGKGRKERIVPIGEAAASAIEEYMTKA 195 Query: 250 IGK-------ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300 GK + F+N+ ++++ F K A +AG+ K + H +R AT + Sbjct: 196 RGKLLKNNVSDALFLNHHGKQISRQGFWKNLKKIALEAGIKKELTPHTLRHSFATHLLEN 255 Query: 301 GATAHELMATYGWKTVDQAETYTK 324 GA + G + + YT Sbjct: 256 GADLRAVQEMLGHADISTTQIYTH 279 >gi|148264429|ref|YP_001231135.1| tyrosine recombinase XerD [Geobacter uraniireducens Rf4] gi|146397929|gb|ABQ26562.1| tyrosine recombinase XerD subunit [Geobacter uraniireducens Rf4] Length = 295 Score = 141 bits (356), Expect = 1e-31, Method: Composition-based stats. Identities = 48/270 (17%), Positives = 100/270 (37%), Gaps = 24/270 (8%) Query: 85 GSLAVNSRISFES----YFDQI--IRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLT 138 L N+ ++ Y D + +++ + + + ++ P S + L+ Sbjct: 16 KGLTKNTLEAYSRDLSVYLDFLAERKRTNPENVTALDVVEHVTRLKDSGLAPRSRARALS 75 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS-EGS---QPRL 194 ++R+ ++ + + Y NP +E PK + +++ + +G+ + R Sbjct: 76 AIRMFHRFLLVENYSVSNPTAIIETPKTVNRLPEVLSGREVESLLATAKGDGTFEVRDRA 135 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFM----------K 243 E L +GLR S+ ++ + + + T G V + + + Sbjct: 136 MLEVLYATGLRVSELVSLKLRDVNIDAGYLLTMGKGEKERLVPMGESARTAIGEYLAGIR 195 Query: 244 LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAG 301 +L E F++ KM+ F K ++ AG+ K S H +R AT + G Sbjct: 196 ILLDRKGDNEYLFLSRLGGKMSRQAFWNIIKKRSGAAGIRKNISPHTLRHSFATHLLENG 255 Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRL 331 A + G + + YT R RL Sbjct: 256 ADLRSVQIMLGHADLSSTQIYTH-VTRERL 284 >gi|168180442|ref|ZP_02615106.1| tyrosine recombinase XerD [Clostridium botulinum NCTC 2916] gi|168184537|ref|ZP_02619201.1| tyrosine recombinase XerD [Clostridium botulinum Bf] gi|237795269|ref|YP_002862821.1| tyrosine recombinase XerD [Clostridium botulinum Ba4 str. 657] gi|182668654|gb|EDT80632.1| tyrosine recombinase XerD [Clostridium botulinum NCTC 2916] gi|182672365|gb|EDT84326.1| tyrosine recombinase XerD [Clostridium botulinum Bf] gi|229260695|gb|ACQ51728.1| tyrosine recombinase XerD [Clostridium botulinum Ba4 str. 657] Length = 291 Score = 141 bits (356), Expect = 1e-31, Method: Composition-based stats. Identities = 43/282 (15%), Positives = 106/282 (37%), Gaps = 21/282 (7%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD-----FDYRKITTKHIRSGVESR 126 K +I Y K +L+ N+ ++ ++ + +T ++ Sbjct: 2 KNIIENYIKDLQKKNLSKNTLEAYRRDVEKFSEFVRNREEKILSVDTVTIMAFVQYLQRE 61 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 SS ++ + S+R +K+ +++ V+ +P L E PK + + + E++ + + Sbjct: 62 GRATSSIVRNIVSIRNFYKYLIKKNMVSEDPTLGYEIPKIERTIPKILSVEEVDKLLNSP 121 Query: 187 S---EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG--- 240 +G + + E + +G++ ++ + + IK + + + +P G Sbjct: 122 DSSKKGLRDKAMLELMYATGVKITELLNLNIYDINLKFNYIKCRGSKKRERI-IPIGSYA 180 Query: 241 ---FMKLLAMTPIGK----ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRK 291 L + P + F+N +M F K A +A ++K ++ +R Sbjct: 181 IKCLKNYLEVRPAINVYNLDYLFLNLKGTQMTRQGFWKIIKFYAKEAFIDKEIDSYTLRH 240 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 A GA + G K + + Y+ + + ++ Sbjct: 241 SFAVHLLQNGADIKSVQELLGHKDLAATQIYSSISKKSKIAE 282 >gi|229168834|ref|ZP_04296553.1| Tyrosine recombinase xerD [Bacillus cereus AH621] gi|228614682|gb|EEK71788.1| Tyrosine recombinase xerD [Bacillus cereus AH621] Length = 296 Score = 141 bits (356), Expect = 1e-31, Method: Composition-based stats. Identities = 45/271 (16%), Positives = 108/271 (39%), Gaps = 25/271 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFD----YRKITTKHIRSGVESRKHTPSSAI---QFL 137 LA N+ +S+E ++ + + + ++T HI + ++ K S+ + + Sbjct: 16 KGLAKNTVVSYERDLKSYVKYLQNVEQTKTFHEVTRLHIVNFLQHLKENGKSSKTLARHI 75 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF----KSFWSEGSQPR 193 S+R ++ +R+ V +P + +E P+ + + + + ++++ K+ + G + + Sbjct: 76 ASIRSFHQFLLRERAVEHDPSVHIETPQGERKLPKVLSIDEVEALLQTPKTASAFGIRDK 135 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGK 252 E L +GLR S+ ++ + + ++ K + L + + Sbjct: 136 AMLELLYATGLRVSELIALNLEDVHLTMGFVRCIGKGNKERIIPLGSLATEAIQKYIEKG 195 Query: 253 ----------ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300 + F+N+ +++ F K A +A + K + H +R AT + Sbjct: 196 RRELMGKKAVDALFLNHHGNRLSRQGFWKILKRLAKEANIAKELTPHTLRHSFATHLLEN 255 Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRL 331 GA + G + + YT + RL Sbjct: 256 GADLRAVQEMLGHADISTTQIYTH-VSKARL 285 >gi|254247398|ref|ZP_04940719.1| Phage integrase [Burkholderia cenocepacia PC184] gi|124872174|gb|EAY63890.1| Phage integrase [Burkholderia cenocepacia PC184] Length = 316 Score = 141 bits (356), Expect = 1e-31, Method: Composition-based stats. Identities = 49/268 (18%), Positives = 90/268 (33%), Gaps = 22/268 (8%) Query: 85 GSLAVNSRISFES---YFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSSAIQFLTSM 140 LA N+ ++ F Q + + D + + +R +S+ + L+ Sbjct: 39 RGLARNTLDAYRRDLALFSQWLAATHDAPLDSADEAMVTGYIAARSDGKATSSNRRLSVF 98 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLAF 196 R + WAVR+ + +P L + K+ ++ ++ G+ + R Sbjct: 99 RRYYGWAVREHRASADPTLRITSAKQGARFPSTLSEAQVEALLGAPDIGTPLGLRDRTML 158 Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------ELPDGFMKLLAM 247 E + SGLR S+ + N ++ G+ + + Sbjct: 159 ELMYASGLRVSELVTLKTVEVGLNEGVVRVMGKGSKERLVPFGEVAHGWIERYLRDARPA 218 Query: 248 T--PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGAT 303 + F+ M QF K A +A V + S H +R AT + GA Sbjct: 219 LLGARAADALFVTARGDGMTRQQFWNIIKRHAQQADVRAHLSPHTLRHAFATHLLNHGAD 278 Query: 304 AHELMATYGWKTVDQAETYTKGADRIRL 331 + G + + YT A R RL Sbjct: 279 LRVVQLLLGHSDISTTQIYTHVA-RERL 305 >gi|145588480|ref|YP_001155077.1| tyrosine recombinase XerD [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145046886|gb|ABP33513.1| tyrosine recombinase XerD subunit [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 305 Score = 141 bits (356), Expect = 1e-31, Method: Composition-based stats. Identities = 50/269 (18%), Positives = 87/269 (32%), Gaps = 24/269 (8%) Query: 86 SLAVNSRISFESYF----DQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMR 141 LA NS ++ + ++SG Y R ++A + LT + Sbjct: 27 GLAKNSLSAYRRDLLLLAQWLYQQSGVDLYAVTEKDLTAYIAHRRADKATTANRRLTVFK 86 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAFE 197 ++ A+R V +PC+ + K+ + +++ + + G + R E Sbjct: 87 RFYRHALRINLVKSDPCIGLRAAKQALRFPKTLSEDQVTALLNAPDIETPLGLRDRTMLE 146 Query: 198 FLLYSGLRCSDSCRAGV--QHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF 255 + SGLR S+ L + + K G V + L T Sbjct: 147 LMYASGLRVSEIVSLKTVALGLNEGVVRVVNGKGGKERLVPFGGEAGQWLRRYLAEARTP 206 Query: 256 FI-----------NNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGA 302 + + + F K AT A + S H +R AT + GA Sbjct: 207 LLEGKTTDAVFVGRHTGTGLTRQAFWALIKRYATVANIPVALSPHTLRHAFATHLLNHGA 266 Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRL 331 + G + + YT A R RL Sbjct: 267 DLRVVQLLLGHADISTTQIYTHVA-RERL 294 >gi|229846398|ref|ZP_04466506.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae 7P49H1] gi|229810491|gb|EEP46209.1| site-specific tyrosine recombinase XerD [Haemophilus influenzae 7P49H1] Length = 297 Score = 141 bits (356), Expect = 1e-31, Method: Composition-based stats. Identities = 46/282 (16%), Positives = 95/282 (33%), Gaps = 26/282 (9%) Query: 73 WLISEYRKSAHW--GSLAVNSRISFESYFDQIIRKSGDFDYR-----KITTKHIRSGVES 125 LI + W L+ N+ S+ + D + + Sbjct: 5 ALIDLFLNEY-WIEKGLSENTVQSYRLDLTALCDWLDKNDLSLETLDAVDLQGFLGERLE 63 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + + +S + L++MR LF++ R++Y +P + PK + + T++ + + Sbjct: 64 KGYKVTSTARMLSAMRKLFQYLYREKYRVDDPSAVLSSPKLPSRLPKYLTEQQVSDLLNT 123 Query: 186 W----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG 240 + + E L +GLR ++ ++++ ++ K V + + Sbjct: 124 PDVDVPLELRDKAMLELLYATGLRVTELVSLTIENMSVQQGVVRVIGKGNKERIVPMGEE 183 Query: 241 FMKL-----LAMTPI-----GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAH 287 L P+ + F + Q+M F K A A ++ S H Sbjct: 184 AAYWVRQFMLYGRPVLLNRQSSDVVFPSQRAQQMTRQTFWHRVKHYAILADIDADALSPH 243 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 +R AT + GA + G + + YT A Sbjct: 244 VLRHAFATHLVNHGADLRVVQMLLGHTDLSTTQIYTHVAKER 285 >gi|312903284|ref|ZP_07762464.1| tyrosine recombinase XerD [Enterococcus faecalis TX0635] gi|310633160|gb|EFQ16443.1| tyrosine recombinase XerD [Enterococcus faecalis TX0635] Length = 296 Score = 141 bits (356), Expect = 1e-31, Method: Composition-based stats. Identities = 47/274 (17%), Positives = 107/274 (39%), Gaps = 27/274 (9%) Query: 85 GSLAVNSRISFESYFDQ---IIRKSG----DFDYRKITTKHIRSGVESRKHTPSSAIQFL 137 L+ N+R S+E + +++ G D R + T+ ++S E ++ + +S I+ + Sbjct: 16 RGLSNNTRRSYERDLKKYVAFLQEQGLHSWDEVDRYMITEFLQSLHEEQQAS-ASVIRMI 74 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPR 193 +S+R ++ ++ NP ++ PK+ + + +++ + G + R Sbjct: 75 SSLRGFHQFLRQERLSEHNPMQHIDSPKKVQKLPSTLSVDEVTRLIETPDTSKPLGMRNR 134 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAM----- 247 E + +GLR S+ + L +I ++T K + L D ++ + Sbjct: 135 AILEVMYATGLRVSELIEIKLGDLHLSIGLLQTIGKGDKERIIPLGDYAIQWIERYMNEA 194 Query: 248 ------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299 + F+N+ + ++ K +A + K + H +R AT + Sbjct: 195 RPQLIKNHPNETHLFVNHHGEPLSRQGIWKNLKRIVREARIEKNITPHTLRHSFATHLLE 254 Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 GA + G + + YT + R+ Sbjct: 255 NGADLRIVQELLGHADISTTQIYTH-ITKQRMAD 287 >gi|187477407|ref|YP_785431.1| site-specific tyrosine recombinase XerD [Bordetella avium 197N] gi|115421993|emb|CAJ48515.1| tyrosine recombinase [Bordetella avium 197N] Length = 314 Score = 141 bits (355), Expect = 1e-31, Method: Composition-based stats. Identities = 49/312 (15%), Positives = 100/312 (32%), Gaps = 29/312 (9%) Query: 51 LTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR---KSG 107 + + P + I LA N+ ++ R ++G Sbjct: 1 MAAFPHSLSAMPDPLLAQADIDAFIDALWLED---GLAANTLAAYRRDLSAFARWLQQTG 57 Query: 108 DFDYRKITTK---HIRSGVE--SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE 162 ++ I + + P++A + L ++R + WA+R++ +PCL + Sbjct: 58 QAASGQLCEASGGDIEAWFAVLHQDSRPATANRRLATLRRFYAWALREKRTGTDPCLKLA 117 Query: 163 RPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQ 218 ++ + ++ ++ G+ + R E L +GLR S+ + Sbjct: 118 AARQPLRVPKTLSEAQVEALLGAPDLGTPRGLRDRAMLETLYATGLRVSELVELQTLDVS 177 Query: 219 --NNIFSIKTQKTGTIITVELPDGFMKLLAM----------TPIGKETFFINNDKQKMNA 266 + + + K G V + L + F+ Q M+ Sbjct: 178 LSDGVVRVVQGKGGKDRLVPMGAEAAHWLQRYLNQARPVLVGARQSDALFVTGRAQAMSR 237 Query: 267 TQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 F K A +A V+ S H +R AT + GA + G + + YT Sbjct: 238 QAFWQLVKKYAQRADVHAPLSPHVLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTH 297 Query: 325 GADRIRLGIKNS 336 A + + Sbjct: 298 VARERLKALHAA 309 >gi|317476478|ref|ZP_07935727.1| tyrosine recombinase XerD [Bacteroides eggerthii 1_2_48FAA] gi|316907504|gb|EFV29209.1| tyrosine recombinase XerD [Bacteroides eggerthii 1_2_48FAA] Length = 316 Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats. Identities = 52/274 (18%), Positives = 99/274 (36%), Gaps = 23/274 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQII-----RKSGDFDYRKITTKHIRSGVESRK 127 +I +Y++ SLA N+ ++ + +++ + + +G+ Sbjct: 16 IIRKYQQYLKLEKSLAPNTFDAYMTDLQKLLHFLEGENIEVGNVTPDDLQRFAAGLHDIG 75 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 P S + L+ ++ F + +Y+ +P +E PK + T E++ + S Sbjct: 76 IHPRSQARILSGIKSFFHFLTVADYLETDPSELLEGPKIGFKIPEVLTVEEIDRIISAVD 135 Query: 188 ----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT-VELPDGFM 242 EG + R E L GLR S+ C + L IK + G+ V + + Sbjct: 136 MDKKEGQRNRAILETLYSCGLRVSELCNLKLSDLYFEEGFIKVEGKGSKQRLVPISPRAI 195 Query: 243 KLLAMTPIGK----------ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290 K + + + F+ ++ K A K G+ K S H R Sbjct: 196 KEIKYWLTDRNLGKIKKGYEDYVFLARWGNNISRIMVFHMIKELAEKTGITKNISPHTFR 255 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK 324 AT + GA + G +++ E YT Sbjct: 256 HSFATHLLEGGANLRAIQCMLGHESIATTEIYTH 289 >gi|291484781|dbj|BAI85856.1| site-specific tyrosine recombinase XerD [Bacillus subtilis subsp. natto BEST195] Length = 296 Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats. Identities = 44/264 (16%), Positives = 98/264 (37%), Gaps = 24/264 (9%) Query: 85 GSLAVNSRISFESYFD----QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI---QFL 137 L+ N+ +S+E + D+ +T HI ++ K + S + L Sbjct: 16 RGLSQNTIVSYERDLKSYSLYLTETLHVTDWNHVTRIHIIQYLKHLKDSGKSGKTSARHL 75 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPR 193 S+R ++ +R++ +P + +E K + + ++++ G + + Sbjct: 76 ASIRSFHQFLLREKVTDKDPSVHIETQKTERALPKVLALNEVERLLDTPKLTSPFGYRDK 135 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLL---AMTP 249 E L +G+R S+ + ++ ++ K V + + + Sbjct: 136 AMLELLYATGIRVSEMIELKTTDVHLSMGFVRCFGKGRKERIVPIGEAAASAIEEYMTKA 195 Query: 250 IGK-------ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300 GK + F+N+ ++++ F K A +AG+ K + H +R AT + Sbjct: 196 RGKLLKNNVSDALFLNHHGKQISRQGFWKNLKKIALEAGIKKELTPHTLRHSFATHLLEN 255 Query: 301 GATAHELMATYGWKTVDQAETYTK 324 GA + G + + YT Sbjct: 256 GADLRAVQEMLGHADISTTQIYTH 279 >gi|224537518|ref|ZP_03678057.1| hypothetical protein BACCELL_02397 [Bacteroides cellulosilyticus DSM 14838] gi|224520831|gb|EEF89936.1| hypothetical protein BACCELL_02397 [Bacteroides cellulosilyticus DSM 14838] Length = 316 Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats. Identities = 50/274 (18%), Positives = 99/274 (36%), Gaps = 23/274 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQII-----RKSGDFDYRKITTKHIRSGVESRK 127 +I +Y++ +L+ N+ ++ + D+++ + +G+ Sbjct: 16 IIRKYQQYLKLEKALSANTLDAYLTDLDKLLRFLKAENIDMLSVTLDDLQRFAAGLHDIG 75 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 P S + ++ ++ F + + +Y +P +E PK + T E++ + Sbjct: 76 IHPRSQARIMSGIKSFFHFLIMADYREDDPSELLEGPKIGFKLPEVLTVEEIDTIIATVD 135 Query: 188 ----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT-VELPDGF- 241 EG + R E L GLR S+ C + L + IK + G+ V + Sbjct: 136 MSKKEGQRNRAILETLYSCGLRVSELCNLKLSELYFDEGFIKVEGKGSKQRLVPISPRAI 195 Query: 242 ---------MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290 L + ++ F+ ++ K A KAG+ K S H R Sbjct: 196 KEIKYWLLDRNLGKIKKGFEDYVFLARWGNSISRIMVFHLIKELAEKAGITKNISPHTFR 255 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK 324 AT + GA + G +++ E YT Sbjct: 256 HSFATHLLEGGANLRAIQCMLGHESIATTEIYTH 289 >gi|121604082|ref|YP_981411.1| tyrosine recombinase XerD [Polaromonas naphthalenivorans CJ2] gi|120593051|gb|ABM36490.1| tyrosine recombinase XerD subunit [Polaromonas naphthalenivorans CJ2] Length = 300 Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats. Identities = 49/292 (16%), Positives = 94/292 (32%), Gaps = 28/292 (9%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQI-------IRKSGDFDYRKITTKHIRSG 122 ++ I L+ N+ ++ ++ D Sbjct: 8 SIDAFIDALWLED---GLSRNTLAAYRRDLSLYAGWLHAKEQQHRKLDDTDEDDLKAYFS 64 Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 +SA + LT + F+WA+R+ +A +P L ++ K+ + ++ + Sbjct: 65 FRHAATKATSANRCLTVFKRYFRWALRENLIAADPTLKLQSAKQALRVPKVMSEAQVDAL 124 Query: 183 KSF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-IITVEL 237 + G + R E + SGLR S+ H+ N +++ G+ V Sbjct: 125 LAAPDDDTPLGLRDRAMLELMYASGLRVSELVGLKTFHVGLNEGALRVMGKGSAERLVPF 184 Query: 238 PDGFMKLLAMTPIGKET----------FFINNDKQKMNATQFSIWFKAKATKAGVN--KS 285 + + F+ M+ F + K A AG++ S Sbjct: 185 GQVAREWIVRYIAESRPAILGGQQTDDLFVTGHGHGMSRVMFWMLVKKYALLAGIHSPLS 244 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 H +R AT + GA + G + YT A R RL ++ Sbjct: 245 PHTLRHAFATHLLNHGADLRAVQMLLGHADISTTTIYTHVA-RERLKSIHAE 295 >gi|313674963|ref|YP_004052959.1| tyrosine recombinase xerd [Marivirga tractuosa DSM 4126] gi|312941661|gb|ADR20851.1| tyrosine recombinase XerD [Marivirga tractuosa DSM 4126] Length = 299 Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats. Identities = 49/281 (17%), Positives = 95/281 (33%), Gaps = 28/281 (9%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISF-------ESYFDQIIRKSGDFDYRKITTKHIRSG 122 ++EY+ SLA N+ ++ + + D R + Sbjct: 3 WDVFLTEYKNYLQLERSLAENTVAAYVHDVIKLKQFLDISNRNVDPLQVSSTDLHNFLEY 62 Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 V T + + ++ ++ +K+ V ++ + NP +E PK + + ++++Q Sbjct: 63 VNELGMTVHTQARVVSGIKGFYKYLVFEDIIEDNPAELLEAPKLGRKLPDVLSFDEIEQI 122 Query: 183 KSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQH--LQNNIFSIKTQKTGTIITVE 236 S G + E L SGLR ++ + + I K V Sbjct: 123 ISSIDRSTANGQRDLTMLEVLYSSGLRVTELTSLKISNTYFDLGFLRII-GKGSKERLVP 181 Query: 237 LPDGFMKLLAM-----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284 + K L + P ++ F+N ++ K + AG+ K Sbjct: 182 MGKSAAKQLKIYLTEVRVHQKPKPEARDIVFLNRFGGAISRISVFTMIKKQCVMAGIRKN 241 Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 S H R AT + GA + G +++ E YT Sbjct: 242 VSPHTFRHSFATHLIEGGADLRAVQEMLGHESITTTEIYTH 282 >gi|229192302|ref|ZP_04319267.1| Tyrosine recombinase xerD [Bacillus cereus ATCC 10876] gi|228591252|gb|EEK49106.1| Tyrosine recombinase xerD [Bacillus cereus ATCC 10876] Length = 296 Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats. Identities = 44/271 (16%), Positives = 105/271 (38%), Gaps = 25/271 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFD----YRKITTKHIRSGVESRKHTPSSAI---QFL 137 LA N+ +S+E ++ + + + ++T HI + ++ K S+ + + Sbjct: 16 KGLAKNTVVSYERDLKSYVKYLQNVEQTKTFHEVTRLHIVNFLQYLKENGKSSKTLARHI 75 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPR 193 S+R ++ +R+ V +P + +E P+ + + + + ++++ G + + Sbjct: 76 ASIRSFHQFLLRERAVEHDPSVHIETPQGERKLPKVLSVDEVEALLQTPKMTSAFGIRDK 135 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGK 252 E L +GLR S+ ++ + + ++ K + L + + Sbjct: 136 AMLELLYATGLRVSELIALNLEDVHLTMGFVRCIGKGNKERIIPLGSLATEAIQKYIEKG 195 Query: 253 ----------ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300 + F+N+ +++ F K A +A + K + H +R AT + Sbjct: 196 RRELIGKKVVDALFLNHHGNRLSRQGFWKILKRLAKEANIEKELTPHTLRHSFATHLLEN 255 Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRL 331 GA + G + + YT + RL Sbjct: 256 GADLRAVQEMLGHADISTTQIYTH-VSKTRL 285 >gi|83644610|ref|YP_433045.1| tyrosine recombinase XerD [Hahella chejuensis KCTC 2396] gi|83632653|gb|ABC28620.1| tyrosine recombinase XerD [Hahella chejuensis KCTC 2396] Length = 284 Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats. Identities = 49/275 (17%), Positives = 104/275 (37%), Gaps = 23/275 (8%) Query: 85 GSLAVNSRISFESYFDQIIR-KSGD----FDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139 L+ N+R+S+ ++ G D + + + +S+ + L++ Sbjct: 6 QGLSENTRMSYRCDLLRLAEWLMGRGRTLVDASREDLFSFLAVRMQKGAKGASSARMLST 65 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195 +R +++ +R+ V +P L +E PK ++ +++Q + ++ ++ Sbjct: 66 LRKFYRYLLREGVVQEDPTLRIEHPKVGRLLPGAISEMEVEQLLAEPDASQPIEARDKVM 125 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAM------- 247 E L SGLR S+ + + ++ K G L + ++ L Sbjct: 126 LEVLYASGLRVSELVSLRLYQVNLRQGVLRVVGKGGKERLTPLGEQAVEQLEAYIKGVRP 185 Query: 248 ---TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302 F + +M F K A+++G++K + H +R AT + GA Sbjct: 186 QLLAGREDGVLFPSMRGSEMTRQTFWHRIKLYASRSGISKNITPHTLRHAFATHLLNHGA 245 Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 + G + + YT A + RL +SR Sbjct: 246 DLRVVQLLLGHSDLSTTQIYTHVA-KARLQQLHSR 279 >gi|30022176|ref|NP_833807.1| site-specific tyrosine recombinase XerD [Bacillus cereus ATCC 14579] gi|206971233|ref|ZP_03232184.1| integrase/recombinase XerD [Bacillus cereus AH1134] gi|218235095|ref|YP_002368894.1| site-specific tyrosine recombinase XerD [Bacillus cereus B4264] gi|218899252|ref|YP_002447663.1| integrase/recombinase XerD [Bacillus cereus G9842] gi|228902600|ref|ZP_04066751.1| Tyrosine recombinase xerD [Bacillus thuringiensis IBL 4222] gi|228909920|ref|ZP_04073741.1| Tyrosine recombinase xerD [Bacillus thuringiensis IBL 200] gi|228941242|ref|ZP_04103795.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228954374|ref|ZP_04116400.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228960355|ref|ZP_04122008.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar pakistani str. T13001] gi|228974174|ref|ZP_04134744.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228980765|ref|ZP_04141070.1| Tyrosine recombinase xerD [Bacillus thuringiensis Bt407] gi|229047783|ref|ZP_04193363.1| Tyrosine recombinase xerD [Bacillus cereus AH676] gi|229071595|ref|ZP_04204813.1| Tyrosine recombinase xerD [Bacillus cereus F65185] gi|229081347|ref|ZP_04213850.1| Tyrosine recombinase xerD [Bacillus cereus Rock4-2] gi|229111564|ref|ZP_04241115.1| Tyrosine recombinase xerD [Bacillus cereus Rock1-15] gi|229129370|ref|ZP_04258341.1| Tyrosine recombinase xerD [Bacillus cereus BDRD-Cer4] gi|229146665|ref|ZP_04275032.1| Tyrosine recombinase xerD [Bacillus cereus BDRD-ST24] gi|229152292|ref|ZP_04280485.1| Tyrosine recombinase xerD [Bacillus cereus m1550] gi|229180370|ref|ZP_04307713.1| Tyrosine recombinase xerD [Bacillus cereus 172560W] gi|296504585|ref|YP_003666285.1| site-specific tyrosine recombinase XerD [Bacillus thuringiensis BMB171] gi|29897733|gb|AAP11008.1| DNA integration/recombination/invertion protein [Bacillus cereus ATCC 14579] gi|206734005|gb|EDZ51176.1| integrase/recombinase XerD [Bacillus cereus AH1134] gi|218163052|gb|ACK63044.1| integrase/recombinase XerD [Bacillus cereus B4264] gi|218543889|gb|ACK96283.1| integrase/recombinase XerD [Bacillus cereus G9842] gi|228603117|gb|EEK60595.1| Tyrosine recombinase xerD [Bacillus cereus 172560W] gi|228631254|gb|EEK87890.1| Tyrosine recombinase xerD [Bacillus cereus m1550] gi|228636835|gb|EEK93298.1| Tyrosine recombinase xerD [Bacillus cereus BDRD-ST24] gi|228653975|gb|EEL09842.1| Tyrosine recombinase xerD [Bacillus cereus BDRD-Cer4] gi|228671946|gb|EEL27239.1| Tyrosine recombinase xerD [Bacillus cereus Rock1-15] gi|228701969|gb|EEL54452.1| Tyrosine recombinase xerD [Bacillus cereus Rock4-2] gi|228711531|gb|EEL63488.1| Tyrosine recombinase xerD [Bacillus cereus F65185] gi|228723575|gb|EEL74940.1| Tyrosine recombinase xerD [Bacillus cereus AH676] gi|228778934|gb|EEM27196.1| Tyrosine recombinase xerD [Bacillus thuringiensis Bt407] gi|228785514|gb|EEM33523.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228799379|gb|EEM46343.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar pakistani str. T13001] gi|228805306|gb|EEM51899.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228818401|gb|EEM64473.1| Tyrosine recombinase xerD [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228849755|gb|EEM94588.1| Tyrosine recombinase xerD [Bacillus thuringiensis IBL 200] gi|228857041|gb|EEN01550.1| Tyrosine recombinase xerD [Bacillus thuringiensis IBL 4222] gi|296325637|gb|ADH08565.1| site-specific tyrosine recombinase XerD [Bacillus thuringiensis BMB171] gi|326941864|gb|AEA17760.1| site-specific tyrosine recombinase XerD [Bacillus thuringiensis serovar chinensis CT-43] Length = 296 Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats. Identities = 44/271 (16%), Positives = 105/271 (38%), Gaps = 25/271 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFD----YRKITTKHIRSGVESRKHTPSSAI---QFL 137 LA N+ +S+E ++ + + + ++T HI + ++ K S+ + + Sbjct: 16 KGLAKNTVVSYERDLKSYVKYLQNVEQTKTFHEVTRLHIVNFLQYLKENGKSSKTLARHI 75 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPR 193 S+R ++ +R+ V +P + +E P+ + + + + ++++ G + + Sbjct: 76 ASIRSFHQFLLRERAVEHDPSVHIETPQGERKLPKVLSVDEVEALLQTPKMTSAFGIRDK 135 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGK 252 E L +GLR S+ ++ + + ++ K + L + + Sbjct: 136 AMLELLYATGLRVSELIALNLEDVHLTMGFVRCIGKGNKERIIPLGSLATEAIQKYIEKG 195 Query: 253 ----------ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300 + F+N+ +++ F K A +A + K + H +R AT + Sbjct: 196 RRELMGKKVVDALFLNHHGNRLSRQGFWKILKRLAKEANIEKELTPHTLRHSFATHLLEN 255 Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRL 331 GA + G + + YT + RL Sbjct: 256 GADLRAVQEMLGHADISTTQIYTH-VSKTRL 285 >gi|23099302|ref|NP_692768.1| integrase:recombinase [Oceanobacillus iheyensis HTE831] gi|34222800|sp|Q7ZAM3|XERD_OCEIH RecName: Full=Tyrosine recombinase xerD gi|22777531|dbj|BAC13803.1| integrase : recombinase [Oceanobacillus iheyensis HTE831] Length = 297 Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats. Identities = 47/271 (17%), Positives = 99/271 (36%), Gaps = 25/271 (9%) Query: 85 GSLAVNSRISFES----YFDQIIRKSGDFDYRKITTKHIRSGVESRKH---TPSSAIQFL 137 L+ N+ S++ Y + + KI+ I + K + ++ + + Sbjct: 17 RGLSDNTLSSYKRDLTNYLQYMKDHDKTATWDKISRTDIMGFLYMLKDQGKSTATISRHI 76 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---WSEGSQPRL 194 +S+R ++ +R++ + +P L +E PK+ + +++++ + + + Sbjct: 77 SSIRSFHQFLIREQITSNDPSLHIETPKKDRKLPDILSQDEVDRLLEIKMNTKLSVRNKA 136 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGK- 252 E L +GLR S+ V L + ++ K V L D L Sbjct: 137 MLELLYATGLRVSELISLNVSDLHLMMGFVQCFGKGSKERIVPLGDTAKHYLEKYISEAR 196 Query: 253 ----------ETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADA 300 + F+N +++ F K +AG+ K+ H +R AT + Sbjct: 197 DSLIKKNNREDALFVNQHGRRLTRQGFWKILKGLTLEAGILKTITPHTLRHSFATHLLEN 256 Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRL 331 GA + G + + YT + RL Sbjct: 257 GADLRLVQEMLGHADISTTQVYTH-VTKARL 286 >gi|117921769|ref|YP_870961.1| tyrosine recombinase XerD [Shewanella sp. ANA-3] gi|117614101|gb|ABK49555.1| tyrosine recombinase XerD [Shewanella sp. ANA-3] Length = 300 Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats. Identities = 50/288 (17%), Positives = 104/288 (36%), Gaps = 26/288 (9%) Query: 74 LISEYRKSAHW--GSLAVNSRISFESYFDQIIRKSGDFDYRKITT-----KHIRSGVESR 126 LI + W L+ N+ ++ + R R I + + + Sbjct: 10 LIDAFLDDL-WSSKGLSDNTLSAYRTDLRHFDRYQQGQGLRLIEVGQADVRAYLAYRVEQ 68 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF- 185 + +S+ + L+S+R + + ++ + +A +P +E PK + ++ + + + Sbjct: 69 QFARTSSARLLSSLRRFYTYLLQTKQIAGDPMALIESPKLSRQLPDSLSESQVDRLLAEP 128 Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPD-- 239 + + E L +GLR S+ ++ + ++ K G V + + Sbjct: 129 NVDDPVECRDKAMLELLYATGLRVSELVGLTMEQMSLRQGLVRIVGKGGKERLVPMGELA 188 Query: 240 --------GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGV 289 F + + I + F + Q M F K A++AG+ S H + Sbjct: 189 ITEVERYLSFARYELLGNIQSDVVFPSKRAQMMTRQTFWHRIKLYASRAGIETELSPHTL 248 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 R AT + GA + G + + YT A R RL + + Sbjct: 249 RHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVA-RARLQELHQQ 295 >gi|78484996|ref|YP_390921.1| tyrosine recombinase XerD [Thiomicrospira crunogena XCL-2] gi|78363282|gb|ABB41247.1| tyrosine recombinase XerD subunit [Thiomicrospira crunogena XCL-2] Length = 297 Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats. Identities = 43/267 (16%), Positives = 100/267 (37%), Gaps = 22/267 (8%) Query: 86 SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFLTSMRV 142 L+ N+ +++ + G D + + + + + + PSS + L++++ Sbjct: 21 GLSDNTLQAYQRDLKKTQLALGKTDLSQASREQLEDYLFQLHVDQVNPSSIARCLSALKR 80 Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAFEF 198 + + + + +P ++ P+ + ++ ++ + G + + E Sbjct: 81 FYLFLILHNRIQQDPAAQLKAPQLIKKIPSVISEAQVEALLNAPDLTTPLGVRDKAILEL 140 Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT--------IITVELPDGFMKLLAMTPI 250 + SGLR S+ + L + ++ G + +E + ++K + Sbjct: 141 MYASGLRVSELVNLPYEQLNLSAGLVQVTGKGNKERIVPIGQMAIEAIEAYLKSARPALV 200 Query: 251 GKE----TFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATA 304 GK+ T F++ + M K A +A + S HG+R AT + GA Sbjct: 201 GKQKWVSTLFVSRIGRTMTRQTLWHRIKNLALQADIRSQLSPHGLRHAFATHLINHGADL 260 Query: 305 HELMATYGWKTVDQAETYTKGADRIRL 331 + G + + YT A + RL Sbjct: 261 RTVQLLLGHSDLSTTQIYTHVA-KERL 286 >gi|313206906|ref|YP_004046083.1| tyrosine recombinase xerd [Riemerella anatipestifer DSM 15868] gi|312446222|gb|ADQ82577.1| tyrosine recombinase XerD [Riemerella anatipestifer DSM 15868] gi|325335657|gb|ADZ11931.1| XerD [Riemerella anatipestifer RA-GD] Length = 303 Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats. Identities = 52/276 (18%), Positives = 96/276 (34%), Gaps = 26/276 (9%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQI-------IRKSGDFDYRKITTKHIRSGVESR 126 I ++ + + +L+ N+ ++ ++ + + D + + Sbjct: 7 IQDFANALKFEKNLSNNTIDAYTRDIKKLQYFAENKLNDTSALDISYEQIQEYLYQISKN 66 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ----QF 182 S ++++S++ FK+ E A NP +E PK + E+++ Sbjct: 67 YTNERSQSRWISSIKAFFKFLHEDELRADNPARLLETPKLGLYLPDTLSFEEIESLIEAI 126 Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELP--- 238 S G + E L GLR S+ + +L F I K G V L Sbjct: 127 DKTTSLGKRNHTIIETLYGCGLRVSELVELKISNLNFEEEFIIVDGKGGKTRLVPLAQYT 186 Query: 239 -----DGFMKL---LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHG 288 D +++ + + P + F+N K+ I K A +A + K S H Sbjct: 187 AELIKDYLLEVRSEIKINPKHSDILFLNRRGSKLTRVMVFIIIKDLALQANIKKNISPHT 246 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 R AT GA + G ++ E YT Sbjct: 247 FRHSFATHLLKNGADLRYIQEMLGHSSITTTEIYTH 282 >gi|300718203|ref|YP_003743006.1| Tyrosine recombinase [Erwinia billingiae Eb661] gi|299064039|emb|CAX61159.1| Tyrosine recombinase [Erwinia billingiae Eb661] Length = 297 Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats. Identities = 49/285 (17%), Positives = 102/285 (35%), Gaps = 27/285 (9%) Query: 72 KWLISEYRKSAHW--GSLAVNSRISFESYFDQII-----RKSGDFDYRKITTKHIRSGVE 124 LI ++ A W +LA N+ S+ + +S + + + Sbjct: 4 SDLIEQFL-DALWIERNLAENTVASYRLDLLSLAGWLQHNESNLLRVDAVDLQGFLAERV 62 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 + +S+ + L++MR LF++ R++ +P + PK + ++ + + Sbjct: 63 EGGYKATSSARLLSAMRRLFQYLYREKLREDDPSALLASPKLPQRLPKDLSEAQIDRLLQ 122 Query: 185 F----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPD 239 + + E L +GLR ++ + ++ ++ K V L + Sbjct: 123 APSVEQPIELRDKAMLELLYATGLRVTELVSLTLNNVSLRQGVVRVIGKGDKERLVPLGE 182 Query: 240 GFMKLLAMTPIGKETFFIN----------NDKQKMNATQFSIWFKAKATKAGVN---KSA 286 + + + +N + Q+M F K AT AG++ S Sbjct: 183 EAVHWIEQYLEYGRPWLLNGQTLDVLFPSSRAQQMTRQTFWHRIKHYATLAGIDSAKLSP 242 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIR 330 H +R AT + GA + G + + YT A +R+R Sbjct: 243 HVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLR 287 >gi|113461426|ref|YP_719495.1| site-specific tyrosine recombinase XerD [Haemophilus somnus 129PT] gi|170718469|ref|YP_001783684.1| site-specific tyrosine recombinase XerD [Haemophilus somnus 2336] gi|112823469|gb|ABI25558.1| tyrosine recombinase XerD subunit [Haemophilus somnus 129PT] gi|168826598|gb|ACA31969.1| tyrosine recombinase XerD [Haemophilus somnus 2336] Length = 297 Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats. Identities = 48/290 (16%), Positives = 103/290 (35%), Gaps = 27/290 (9%) Query: 73 WLISEYRKSAHW--GSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESR-- 126 LI + W L+ N+ S+ + + + +++ + R Sbjct: 5 ALIDLFLNEL-WLEKGLSENTVQSYRLDLTALSQWLEPQGLSLETLDVVDLQTFLGERLT 63 Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK-- 183 + +S + L+++R LF++ R++Y + +P + PK + + T++ + Sbjct: 64 QGYKATSTARMLSALRKLFQYLYREKYRSDDPSAVLSSPKLPSRLPKYLTEQQVTDLLNT 123 Query: 184 --SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG 240 + + + E L +GLR ++ + + N ++ K V + + Sbjct: 124 PNTEIPLELRDKAMLEMLYATGLRVTELVSLSLDSININQGVVRVIGKGKKERIVPMGEE 183 Query: 241 FMKLLAMTPIGKETFFI----------NNDKQKMNATQFSIWFKAKATKAGVN---KSAH 287 L + +F + + +M F K A A ++ S H Sbjct: 184 ANYWLRQFILYGRSFLLAGQSSDVVFPSRRGTQMTRQTFWHRVKYYAILAEIDTSALSPH 243 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 +R AT + GA + G + + YT A + RL I + R Sbjct: 244 VLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVA-KERLKILHER 292 >gi|296104556|ref|YP_003614702.1| site-specific tyrosine recombinase XerD [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295059015|gb|ADF63753.1| site-specific tyrosine recombinase XerD [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 298 Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats. Identities = 50/284 (17%), Positives = 100/284 (35%), Gaps = 27/284 (9%) Query: 73 WLISEYRKSAHW--GSLAVNSRISFESYFDQIIRKSGDFDY-----RKITTKHIRSGVES 125 LI ++ A W +LA N+ ++ ++ + + + Sbjct: 6 ALIEQFL-DALWLEKNLAQNTLSAYRRDLTMLVEWLAHRGLSLESAQSDDLQALLGERME 64 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + +S+ + L++MR LF+ R++ A +P + PK + ++ +++ Sbjct: 65 GGYKATSSARLLSAMRRLFQHLYREKIRADDPSALLASPKLPQRLPKDLSEAQVERLLQS 124 Query: 186 ----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG 240 + + E L +GLR S+ + + ++ K V L + Sbjct: 125 PAVDLPLELRDKAMLELLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEE 184 Query: 241 FMKLLAMTPIGKETFFIN----------NDKQKMNATQFSIWFKAKATKAGVN---KSAH 287 + L + +N Q+M F K AT AG++ S H Sbjct: 185 AVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYATLAGIDSEKLSPH 244 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIR 330 +R AT + GA + G + + YT A +R+R Sbjct: 245 VLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLR 288 >gi|15838026|ref|NP_298714.1| site-specific tyrosine recombinase XerD [Xylella fastidiosa 9a5c] gi|34223080|sp|Q9PDF4|XERD_XYLFA RecName: Full=Tyrosine recombinase xerD gi|9106440|gb|AAF84234.1|AE003973_2 integrase/recombinase [Xylella fastidiosa 9a5c] Length = 324 Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats. Identities = 53/274 (19%), Positives = 95/274 (34%), Gaps = 30/274 (10%) Query: 85 GSLAVNSRISFESYFDQIIR----KSGDFD-YRKITTKHIRSGVESRKHTPSSAIQFLTS 139 L+ ++ S+ + + R ++G + + ++P S + L+ Sbjct: 38 HGLSQHTLNSYRRDLEGLARWNNGRAGPLATLTPPALLDYLTWRTQQHYSPLSNARLLSV 97 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195 +R F +AV + NP + P + T+ ++ + EG + R Sbjct: 98 LRTFFSYAVECGWRNDNPSTLLAHPVLPHPLPKALTESQIEALLAAPSIETPEGLRNRAM 157 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLA-------- 246 E + +GLR S+ V L ++ K G V L + L Sbjct: 158 LELMYAAGLRVSELVTLPVAMLNRRQGVLRIIGKGGKERLVPLGEESQHWLQRYLEQARP 217 Query: 247 ---------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSA 294 G FIN ++++ QF W K A AG+ S H +R A Sbjct: 218 SLAADKPIPADSDGDVPLFINTTLKRLSRQQFWRWIKHYAALAGIAPNKVSPHVLRHSFA 277 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADR 328 T + GA L G +++ + YT A + Sbjct: 278 THLLNHGADLRALQMLLGHRSISTTQIYTFIARQ 311 >gi|238921200|ref|YP_002934715.1| tyrosine recombinase XerD, putative [Edwardsiella ictaluri 93-146] gi|238870769|gb|ACR70480.1| tyrosine recombinase XerD, putative [Edwardsiella ictaluri 93-146] Length = 299 Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats. Identities = 51/285 (17%), Positives = 103/285 (36%), Gaps = 27/285 (9%) Query: 72 KWLISEYRKSAHW--GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH-----IRSGVE 124 + LI ++ A W +LA N+ S+ + D +T H + Sbjct: 6 QALIEQFL-DALWLEKNLAENTLASYRQDLRTLAEWLACHDLTLLTAAHGDLQDFFAQRM 64 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 + SS+ + L+++R +++ R+ +P + PK + ++ + Sbjct: 65 DGGYKASSSARLLSALRRCYQYLYRETLRGDDPSALLASPKLPQRLPKDLSEAQVDALLQ 124 Query: 185 FWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPD 239 S + + + E L +GLR S+ + + ++ K V L + Sbjct: 125 APSIDTPLELRDKAMLELLYATGLRVSELVGLAQEDISLRQGVVRVIGKGNKERLVPLGE 184 Query: 240 G-------FMKLLAMTPIGKET---FFINNDKQKMNATQFSIWFKAKATKAGVNK---SA 286 +++ + +T F +N ++M F K A AG++ S Sbjct: 185 EAIYWIEYYLEYGRPWLVNGQTVAALFPSNRARQMTRQTFWHRIKHYAVLAGIDGDRLSP 244 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIR 330 H +R AT + GA + G + + YT A +R+R Sbjct: 245 HVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLR 289 >gi|113866617|ref|YP_725106.1| site-specific tyrosine recombinase XerD [Ralstonia eutropha H16] gi|113525393|emb|CAJ91738.1| Site-specific recombinase XerD [Ralstonia eutropha H16] Length = 312 Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats. Identities = 52/269 (19%), Positives = 88/269 (32%), Gaps = 24/269 (8%) Query: 86 SLAVNSRISFESYFDQII-----RKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSM 140 L+ N+ ++ + G+ + SSA + L Sbjct: 34 GLSRNTIDAYRRDLTLLARWLQHEHRGELPGADDGALSAYFNARHTQSRASSANRRLAVF 93 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAF 196 R ++WA+R+ V +PCL + K+ + T+ + G + R Sbjct: 94 RRFYQWALREHLVEADPCLLLRPAKQPPRYPKTLTESQVDALLEAPDTDTPLGLRDRTML 153 Query: 197 EFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELP----DGFMKLLA---- 246 E + SGLR S+ + + + + K V D + LA Sbjct: 154 ELMYASGLRVSELTQMKTIEIGLNEGVARVVGGKGDKERLVPFGQQAGDWLRRYLASARP 213 Query: 247 --MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302 + + F+ + M F K A AGV+ S H +R AT + GA Sbjct: 214 ALLAGRACDALFVTQRGEGMTRQAFWHLIKRHARDAGVHAPLSPHTLRHAFATHLLNHGA 273 Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRL 331 + G + + YT A R RL Sbjct: 274 DLRVVQLLLGHADISTTQIYTHVA-RERL 301 >gi|238790806|ref|ZP_04634564.1| Phage integrase [Yersinia frederiksenii ATCC 33641] gi|238721121|gb|EEQ12803.1| Phage integrase [Yersinia frederiksenii ATCC 33641] Length = 336 Score = 140 bits (354), Expect = 2e-31, Method: Composition-based stats. Identities = 60/336 (17%), Positives = 116/336 (34%), Gaps = 39/336 (11%) Query: 7 LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHES--TFIPAYMSALTGSTPKREYINSP 64 +PP RT G+ + F+ G IRL S AY + + Sbjct: 13 MPP-----RTCRGRSAFEFKPKLGGTIRLCGFDASPAQVWAAYEALIN-----------D 56 Query: 65 RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124 ++ WL+S + SA + LAV ++ + Y +++ G+ I +HIR ++ Sbjct: 57 KQNENVFNWLVSRFFLSADFIELAVETQKDYRKYAVKVLSVFGEVHPDAIKPEHIRKYMD 116 Query: 125 SRK-HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 R + + A + +F+WA + V +NPC V++ K + R T ++ Sbjct: 117 KRGVKSRTQANREKAFTSRVFRWAYERGMVKMNPCKGVKQFKETSR-TRYITNKEYDALY 175 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243 ++A E R +D L ++ I+ KTG Sbjct: 176 QVSPP--VVQVAMELAYLCCARQADILGMKKNQLIDDGILIQQSKTGISQIKAWGPRLTA 233 Query: 244 LLAMTP-----IGKETFFI--NNDKQKMNATQFSIWFKAKATKAGVNK-------SAHGV 289 ++ + G + F+ + F+ + +A + H + Sbjct: 234 VIKLASQLPLNRGMSSIFVIHQQSGARYTRDGFNSRWLKAKAEAKEKYPELEFNFTFHDL 293 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 + + + + +E A G K Q Y + Sbjct: 294 KAKGISDLS---GSLYEKQAISGHKNAAQTARYDRK 326 >gi|134298963|ref|YP_001112459.1| tyrosine recombinase XerD [Desulfotomaculum reducens MI-1] gi|134051663|gb|ABO49634.1| tyrosine recombinase XerD subunit [Desulfotomaculum reducens MI-1] Length = 296 Score = 140 bits (354), Expect = 2e-31, Method: Composition-based stats. Identities = 46/265 (17%), Positives = 100/265 (37%), Gaps = 26/265 (9%) Query: 85 GSLAVNSRISFE----SYFDQIIRKSGDFDYRKITTKHIRS---GVESRKHTPSSAIQFL 137 LA N+ S+ Y D + ++ G + HI S ++ P++ + L Sbjct: 16 RGLAQNTLASYRIDLSQYLDHLKKQ-GVSSLTQADRNHILSHLYKLQKDGKAPATISRHL 74 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ----QFKSFWSEGSQPR 193 +++ +++ V V+ + +S+E PK K + E+++ Q + G + + Sbjct: 75 AALKHFYRFLVSDGAVSEDYTVSLESPKLKQRLPHVLSTEEVENLLCQPQLSDPAGLRDK 134 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLA------ 246 E + +G+R S+ + ++ ++ IK K + L ++ + Sbjct: 135 AMLELIYATGIRVSEMVSLNLPDVELDMGYIKCFGKGAKERIIPLGSVAIRYIREYLERS 194 Query: 247 -----MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299 + F+N +++ F K A + +NK + H +R AT + Sbjct: 195 RVKLTKGKTEHQALFVNVQGKRLTRQGFWKIIKKYAKEGRINKPITPHTLRHSFATHLLE 254 Query: 300 AGATAHELMATYGWKTVDQAETYTK 324 GA + G + + YT Sbjct: 255 NGADLRAVQEMLGHADISTTQIYTH 279 >gi|297616683|ref|YP_003701842.1| tyrosine recombinase XerD [Syntrophothermus lipocalidus DSM 12680] gi|297144520|gb|ADI01277.1| tyrosine recombinase XerD [Syntrophothermus lipocalidus DSM 12680] Length = 296 Score = 140 bits (354), Expect = 2e-31, Method: Composition-based stats. Identities = 40/264 (15%), Positives = 96/264 (36%), Gaps = 24/264 (9%) Query: 85 GSLAVNSRISFESYFDQII----RKSGDFDYRKITTKHIRSGVESRKHTPSSAI---QFL 137 L+ N+ ++ + ++ G D ++ + + + + L Sbjct: 16 RGLSENTLQAYRRDIGSFLVYCEKERGISDISQVKRHDVVDFLGWLLKGGRAYSSLARTL 75 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPR 193 ++++ F++ ++ Y+ NP ++E P+ R + ++++ + G + R Sbjct: 76 SALKSFFRFMQKERYILTNPTDNIESPQVVRRLPRVLSVSEVEKLLEQPNPVTVRGIRDR 135 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-----------TIITVELPDGFM 242 E + +GLR S+ ++ + ++ G ++ VE Sbjct: 136 AMLELMYATGLRVSELLALQLEDINLVAGFVRCLGKGRKERIVPVNKTSVFWVERYISRS 195 Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300 + + + T F+N +K++ F A +AG+ K H +R AT + Sbjct: 196 RNHLVKSSLERTLFVNAKGKKLSRQGFWKILNGYARQAGIEKEIHPHTLRHSFATHLLEN 255 Query: 301 GATAHELMATYGWKTVDQAETYTK 324 GA + G + + YT Sbjct: 256 GADLRAVQEMLGHADISTTQIYTH 279 >gi|269140272|ref|YP_003296973.1| site-specific tyrosine recombinase [Edwardsiella tarda EIB202] gi|267985933|gb|ACY85762.1| site-specific tyrosine recombinase [Edwardsiella tarda EIB202] gi|304560099|gb|ADM42763.1| Site-specific recombinase XerD [Edwardsiella tarda FL6-60] Length = 299 Score = 140 bits (354), Expect = 2e-31, Method: Composition-based stats. Identities = 48/280 (17%), Positives = 101/280 (36%), Gaps = 26/280 (9%) Query: 72 KWLISEYRKSAHW--GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH-----IRSGVE 124 + LI ++ A W +LA N+ S+ + D +T H + Sbjct: 6 QALIEQFL-DALWLEKNLAENTLASYRQDLRTLAEWLAYHDLTLLTAAHGDLQDFFAQRM 64 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 + SS+ + L+++R +++ R++ + +P + PK + ++ + Sbjct: 65 DGGYKASSSARLLSALRRCYQYLYREKLRSDDPSALLASPKLPQRLPKDLSEAQVDALLQ 124 Query: 185 FWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPD 239 + + + + E L +GLR S+ + + ++ K V L + Sbjct: 125 APAIDTPLELRDKAMLELLYATGLRVSELVGLAQEDISLRQGVVRVIGKGNKERLVPLGE 184 Query: 240 G-------FMKLLAMTPIGKET---FFINNDKQKMNATQFSIWFKAKATKAGVNK---SA 286 +++ + +T F +N ++M F K A AG++ S Sbjct: 185 EAIYWIEYYLEYGRPWLVNGQTVAALFPSNRARQMTRQTFWHRIKHYAVLAGIDAERLSP 244 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 H +R AT + GA + G + + YT A Sbjct: 245 HVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA 284 >gi|149192204|ref|ZP_01870421.1| site-specific tyrosine recombinase XerD [Vibrio shilonii AK1] gi|148833962|gb|EDL50982.1| site-specific tyrosine recombinase XerD [Vibrio shilonii AK1] Length = 304 Score = 140 bits (354), Expect = 2e-31, Method: Composition-based stats. Identities = 43/280 (15%), Positives = 105/280 (37%), Gaps = 26/280 (9%) Query: 72 KWLISEYRKSAHW--GSLAVNSRISFESYFDQIIRKSGDFDYRKITT-----KHIRSGVE 124 + L+ ++ S W L+ N+ S+ + ++++ + +YR + ++ + Sbjct: 11 QGLVEQFLDSM-WMERGLSENTLSSYRNDLFKLLKWMNEHNYRLDFISLSGLQEYQTWLM 69 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 + + SS + L+++R LF++ R++ + +P + PK + T++ + Sbjct: 70 DQNYQQSSRARMLSAIRRLFQYLHREKLRSDDPTALLVSPKLPKRLPKDLTEDQVTALLE 129 Query: 185 F----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPD 239 + + E L +GLR ++ ++++ ++ K V + + Sbjct: 130 APDPNDPIELRDKAMLELLYATGLRVTELVSLTMENISLRQGVVRVIGKGNKERLVPMGE 189 Query: 240 GFMKLLAMTPIGK----------ETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSA 286 + ++ + F + ++M F K A A ++ S Sbjct: 190 NAIDWISEFIEKGRPALLGDKTSDVVFPSKRARQMTRQTFWHRIKFYAVLADIDTELLSP 249 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 H +R AT + GA + G + + YT A Sbjct: 250 HVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVA 289 >gi|282889659|ref|ZP_06298199.1| hypothetical protein pah_c003o054 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281500486|gb|EFB42765.1| hypothetical protein pah_c003o054 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 304 Score = 140 bits (354), Expect = 2e-31, Method: Composition-based stats. Identities = 54/287 (18%), Positives = 107/287 (37%), Gaps = 31/287 (10%) Query: 66 KKPTTLKWLISEYRKSAHW-------GSLAVNSRISFESYFDQIIR---KSGDFDYRKIT 115 + +TLK L +R+ + L+ N+ ++ + Y+ + Sbjct: 3 PEESTLKALF--FREIKDFLVFIRSEKGLSSNTIEAYMRDVQNFANYAWQQEVRRYQAVE 60 Query: 116 TKHIRSGVESRKHT---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172 +H+ + + S K S+ + L S++V F + R+ + NP + +E PK Sbjct: 61 PEHLIAFLGSLKSADYATSTISRTLVSLKVFFGFLKREGTIEQNPSMLLESPKLWQLLPD 120 Query: 173 PWTKEDMQ----QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228 E++ Q + ++G + R FE L SGLR S+ C + + + + K Sbjct: 121 ILDIEEVDLLMNQPDNKTAKGVRDRAIFELLYGSGLRVSEVCTLTIYSIDDQYIRVY-GK 179 Query: 229 TGTIITVELPDGFMKLLAM---------TPIGKETFFINNDKQKMNATQFSIWFKAKATK 279 V + + + +++ F+ + M+ K A + Sbjct: 180 GSKERIVPIGSQALMAVDQYLSLYRWQWDSEKEQSLFVTLRGKSMDRISIWRSIKEYAQQ 239 Query: 280 AGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 AG+ K S H +R AT + GA + G + + YT+ Sbjct: 240 AGITKTISPHTLRHSFATHLLNNGADLRVIQDLLGHANISSTDRYTR 286 >gi|229134899|ref|ZP_04263706.1| Tyrosine recombinase xerD [Bacillus cereus BDRD-ST196] gi|228648574|gb|EEL04602.1| Tyrosine recombinase xerD [Bacillus cereus BDRD-ST196] Length = 296 Score = 140 bits (354), Expect = 2e-31, Method: Composition-based stats. Identities = 45/271 (16%), Positives = 108/271 (39%), Gaps = 25/271 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFD----YRKITTKHIRSGVESRKHTPSSAI---QFL 137 LA N+ +S+E ++ + + + ++T HI + ++ K S+ + + Sbjct: 16 KGLAKNTVVSYERDLKSYVKYLQNVEQTKTFHEVTRLHIVNFLQHLKENGKSSKTLARHI 75 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF----KSFWSEGSQPR 193 S+R ++ +R+ V +P + +E P+ + + + + ++++ K+ + G + + Sbjct: 76 ASIRSFHQFLLRERAVEHDPSVHIETPQGERKLPKVLSIDEVEALLQTTKTASAFGIRDK 135 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGK 252 E L +GLR S+ ++ + + ++ K + L + + Sbjct: 136 AMLELLYATGLRVSELIALNLEDVHLTMGFVRCIGKGNKERIIPLGSLATEAIQKYIEKG 195 Query: 253 ----------ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300 + F+N+ +++ F K A +A + K + H +R AT + Sbjct: 196 RRELMGKKAVDALFLNHHGNRLSRQGFWKILKRLAKEANIAKELTPHTLRHSFATHLLEN 255 Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRL 331 GA + G + + YT + RL Sbjct: 256 GADLRAVQEMLGHADISTTQIYTH-VSKTRL 285 >gi|152971840|ref|YP_001336949.1| site-specific tyrosine recombinase XerD [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238896434|ref|YP_002921172.1| site-specific tyrosine recombinase XerD [Klebsiella pneumoniae NTUH-K2044] gi|262042535|ref|ZP_06015692.1| tyrosine recombinase XerD [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|330010972|ref|ZP_08306937.1| tyrosine recombinase XerD [Klebsiella sp. MS 92-3] gi|150956689|gb|ABR78719.1| tyrosine recombinase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238548754|dbj|BAH65105.1| tyrosine recombinase [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|259040095|gb|EEW41209.1| tyrosine recombinase XerD [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|328534349|gb|EGF60959.1| tyrosine recombinase XerD [Klebsiella sp. MS 92-3] Length = 298 Score = 140 bits (354), Expect = 2e-31, Method: Composition-based stats. Identities = 46/284 (16%), Positives = 102/284 (35%), Gaps = 27/284 (9%) Query: 73 WLISEYRKSAHW--GSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESRKH 128 LI ++ A W +LA N+ ++ ++ + + +++ + R+ Sbjct: 6 ALIEQFL-DALWLERNLAENTLSAYRRDLTMLVEWLHHRGLSLASVGSDDLQALLAERQS 64 Query: 129 ---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 +S + L+++R F+ R++ +P + PK + ++ +++ Sbjct: 65 GGYKATSTARLLSAVRRFFQHLYREKIRPDDPSALLASPKLPQRLPKDLSEAQVERLLQA 124 Query: 186 ----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDG 240 + + E L +GLR S+ + + ++ G V L + Sbjct: 125 PLVEQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVLRVVGKGNKERLVPLGEE 184 Query: 241 FMKLLA----------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAH 287 + + + + + F + Q+M F K A AG++ S H Sbjct: 185 AVLWVENYLEYGRPWLLNGVASDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPH 244 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIR 330 +R AT + GA + G + + YT A +R+R Sbjct: 245 VLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLR 288 >gi|94309464|ref|YP_582674.1| site-specific tyrosine recombinase XerD [Cupriavidus metallidurans CH34] gi|93353316|gb|ABF07405.1| tyrosine-based site-specific recombinase [Cupriavidus metallidurans CH34] Length = 302 Score = 140 bits (354), Expect = 2e-31, Method: Composition-based stats. Identities = 52/269 (19%), Positives = 92/269 (34%), Gaps = 24/269 (8%) Query: 86 SLAVNSRISFES---YFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPSSAIQFLTSM 140 LA N+ ++ + + +SG + + +R + SSA + LT Sbjct: 24 GLARNTIDAYRRDLAMLARWLHESGTTALLGVDDTALSGYFAARHLETRASSANRRLTVF 83 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAF 196 R ++WA+R+ + +PCL + K+ + ++ + G + R Sbjct: 84 RRFYQWALREHMIEADPCLLLRPAKQPPRFPKTLSEAQVVALLEAPDIETPLGLRDRTML 143 Query: 197 EFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVE--------LPDGFMKLLA 246 E + SGLR S+ + + + K V L Sbjct: 144 ELMYASGLRVSELTNMKTIEVGLNEGVARVVGGKGNKERLVPFGAQAGDWLHRYLSDARP 203 Query: 247 MTPIGK--ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302 G+ + F+ + M F K A AG++ S H +R AT + GA Sbjct: 204 TLLAGRACDELFVTQRGEGMTRQTFWHLIKKHARDAGIHAPLSPHTLRHAFATHLLNHGA 263 Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRL 331 + G + + YT A R RL Sbjct: 264 DLRVVQLLLGHADISTTQIYTHVA-RERL 291 >gi|56421448|ref|YP_148766.1| integrase/recombinase [Geobacillus kaustophilus HTA426] gi|56381290|dbj|BAD77198.1| integrase/recombinase [Geobacillus kaustophilus HTA426] Length = 337 Score = 140 bits (354), Expect = 2e-31, Method: Composition-based stats. Identities = 41/276 (14%), Positives = 97/276 (35%), Gaps = 22/276 (7%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYR--------KITTKHIRS 121 T + L+ + + +L ++ + S + ++ + + + +++ Sbjct: 40 TFEELLEIFIEDCELRNLREHTIKYYRSELNAFVKLLKEQEIELRVSEWTGETIKRNVIM 99 Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 ++ + S L ++R F + + + NP ++ + + + + + ++ Sbjct: 100 YMKEKGLKTVSINSRLRALRAFFNFLEGRNLIKSNPMKDIKLLRDRKRIVETFDNQQIKA 159 Query: 182 FKSFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITV 235 G + LL +G+R ++ + + + I+ K G V Sbjct: 160 LFKACDLRTFVGLRDYTIMMLLLETGVRVNELVSIKTTDIIWEQKVIRIRNTKGGFERFV 219 Query: 236 ELPD----GFMKLLA-MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAH 287 + D K +A + + FI D ++ Q K KAG+ S H Sbjct: 220 PIQDKMINQLKKYIAVRGSVDTDYLFITRDDTPLSKKQVQDRIKEYGKKAGIKNVRCSPH 279 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 R A + GA A +L A G +++ + Y Sbjct: 280 TFRHTFAKLCVLNGANAFQLQAILGHTSLEMTKVYV 315 >gi|225077168|ref|ZP_03720367.1| hypothetical protein NEIFLAOT_02223 [Neisseria flavescens NRL30031/H210] gi|224951516|gb|EEG32725.1| hypothetical protein NEIFLAOT_02223 [Neisseria flavescens NRL30031/H210] Length = 292 Score = 140 bits (354), Expect = 2e-31, Method: Composition-based stats. Identities = 45/277 (16%), Positives = 100/277 (36%), Gaps = 19/277 (6%) Query: 70 TLKWLISEYRKSAHWGS-LAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESR 126 ++ LI + +S L+ N+ S+ ++ + G D+ + V + Sbjct: 2 SMDDLIDKLLESLWLQDRLSHNTLQSYRRDLVKVAARLAEGGQDWLSADEFALSDAVYAE 61 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF- 185 +S + L++ + ++ W A NP ++ PK + + T+ + + Sbjct: 62 GEKSTSQARALSACKRMYVWLEETGQRADNPTRFLKAPKSERKLPTLITEAQIDALLAAP 121 Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT-VELPDGF 241 G + + E + +GLR +++ + + + + SI+T G + V L Sbjct: 122 DVETPHGLRDKALLEVMYATGLRVTEAVKLTLSDIDLHRGSIRTIGKGDKLRLVPLGQEA 181 Query: 242 MKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVR 290 + F++ + ++ + K A AG+ S HG+R Sbjct: 182 AYWVERYCNESRPLLLKNKICDEVFVSQKRSGISRQLAWMIVKEYAEAAGIASLSPHGLR 241 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 AT + G + G ++ + YT A+ Sbjct: 242 HAFATHLVNHGVDLRSVQMMLGHSDINTTQIYTHVAN 278 >gi|163941832|ref|YP_001646716.1| site-specific tyrosine recombinase XerD [Bacillus weihenstephanensis KBAB4] gi|229013300|ref|ZP_04170441.1| Tyrosine recombinase xerD [Bacillus mycoides DSM 2048] gi|229061763|ref|ZP_04199096.1| Tyrosine recombinase xerD [Bacillus cereus AH603] gi|163864029|gb|ABY45088.1| tyrosine recombinase XerD [Bacillus weihenstephanensis KBAB4] gi|228717509|gb|EEL69173.1| Tyrosine recombinase xerD [Bacillus cereus AH603] gi|228748067|gb|EEL97931.1| Tyrosine recombinase xerD [Bacillus mycoides DSM 2048] Length = 296 Score = 140 bits (354), Expect = 2e-31, Method: Composition-based stats. Identities = 45/271 (16%), Positives = 108/271 (39%), Gaps = 25/271 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFD----YRKITTKHIRSGVESRKHTPSSAI---QFL 137 LA N+ +S+E ++ + + + ++T HI + ++ K S+ + + Sbjct: 16 KGLAKNTVVSYERDLKSYVKYLQNVEQTKTFHEVTRLHIVNFLQHLKENGKSSKTLARHI 75 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF----KSFWSEGSQPR 193 S+R ++ +R+ V +P + +E P+ + + + + ++++ K+ + G + + Sbjct: 76 ASIRSFHQFLLRERAVEHDPSVHIETPQGERKLPKVLSIDEVEALLQTPKTASAFGIRDK 135 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGK 252 E L +GLR S+ ++ + + ++ K + L + + Sbjct: 136 AMLELLYATGLRVSELIALNLEDVHLTMGFVRCIGKGNKERIIPLGSLATEAIQKYIEKG 195 Query: 253 ----------ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300 + F+N+ +++ F K A +A + K + H +R AT + Sbjct: 196 RRELMGKKAVDALFLNHHGNRLSRQGFWKILKRLAKEANIAKELTPHTLRHSFATHLLEN 255 Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRL 331 GA + G + + YT + RL Sbjct: 256 GADLRAVQEMLGHADISTTQIYTH-VSKTRL 285 >gi|167994916|ref|ZP_02576006.1| site-specific recombinase, phage integrase family [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|194444962|ref|YP_002040289.1| site-specific recombinase, phage integrase family [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194403625|gb|ACF63847.1| site-specific recombinase, phage integrase family [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|205327312|gb|EDZ14076.1| site-specific recombinase, phage integrase family [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] Length = 339 Score = 140 bits (354), Expect = 2e-31, Method: Composition-based stats. Identities = 67/336 (19%), Positives = 118/336 (35%), Gaps = 33/336 (9%) Query: 5 LRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP 64 ++LPP V+K RTR YY++ + L P T MSAL + S Sbjct: 11 VKLPPRVSKTRTR-----YYYKPTSRETVTL-GPITLT-----MSALWKRYEEERRNYSD 59 Query: 65 RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124 T + L + KSA++ LA+ ++ + + +++ G I + +R ++ Sbjct: 60 V---MTFEKLWKMFLKSAYYTELAIRTQRDYLQHQKKLLAVFGKVKADVIKPEDVRQFMD 116 Query: 125 SRK-HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 R + + A Q ++SM +++W + YV NPC V + K + T ED Sbjct: 117 RRGLQSKNQANQEMSSMSRVYRWGYERGYVKGNPCAGVSKFSLKARE-QYITDEDYLAIY 175 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243 R A E R +D + + I+ KTG + Sbjct: 176 KHADH--VVRAAMEISYLCAARQADVLALRWMQISDKGIFIQQGKTGKKQIKVWTPRLQQ 233 Query: 244 LLAMTPIG------KETFFINNDKQKMNATQFSIWFKAKATKA------GVNKSAHGVRK 291 L NND+ + F+ + A ++ + H + K Sbjct: 234 ALKTAQTECPKLSPDALVLYNNDRGQFIRKTFNNRWLKAVRAAQSELGRQLDYTFHDI-K 292 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 A + ++ + G KT Q Y + Sbjct: 293 AKAISDFE--GSSRDKQIFSGHKTESQVLIYDRKVQ 326 >gi|72117696|gb|AAZ59959.1| tyrosine recombinase XerD subunit [Ralstonia eutropha JMP134] Length = 327 Score = 140 bits (354), Expect = 2e-31, Method: Composition-based stats. Identities = 48/269 (17%), Positives = 92/269 (34%), Gaps = 24/269 (8%) Query: 86 SLAVNSRISFESYFDQIIR---KSGDFDYRKITTKHIRSGVESR--KHTPSSAIQFLTSM 140 L+ N+ ++ + R +S + I + + +R + SS+ + L Sbjct: 49 GLSRNTMDAYRRDLSMLARWLHQSSNGGLLGIGDTELNAYFLARHPETRASSSNRRLAVF 108 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAF 196 R ++WA+R++ + +PC+ + K+ + ++ ++ G + R Sbjct: 109 RRFYQWALREQMIEADPCILLRPAKQPPRVPKTLSEAQVEALLEAPDTTTPLGLRDRTML 168 Query: 197 EFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDGFMKLLAM------- 247 E + SGLR S+ + + + + K V L Sbjct: 169 ELMYASGLRVSELTQMKTVEIGLNEGVARVVGGKGDKERLVPFGMQASDWLRRYLGSARP 228 Query: 248 ---TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGA 302 + F+ + M F K A AG+ S H +R AT + GA Sbjct: 229 ALLAGRACDALFVTQRGEGMTRQAFWHLIKRHARDAGITAPLSPHTLRHAFATHLLNHGA 288 Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRL 331 + G + + YT A R RL Sbjct: 289 DLRVVQLLLGHADISTTQIYTHVA-RERL 316 >gi|260223080|emb|CBA33286.1| Tyrosine recombinase xerD [Curvibacter putative symbiont of Hydra magnipapillata] Length = 297 Score = 140 bits (354), Expect = 2e-31, Method: Composition-based stats. Identities = 52/272 (19%), Positives = 96/272 (35%), Gaps = 28/272 (10%) Query: 86 SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH--TPSSAIQFLTSMRVL 143 L+ N+ ++ ++ +R ++A + LT ++ Sbjct: 19 GLSKNTLQAYRRDLTLFAGHLAPKPLYGAQEHDLQGYFAARHAETKATTANRRLTVLKRF 78 Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRLAFEFL 199 F+WA+R+ ++A +P L ++ K+ + T+ ++ + G + + E L Sbjct: 79 FRWALREGHIAQDPTLKLQAAKQALRVPKTLTEAQVEALLNAPDTNEALGIRDKAMLELL 138 Query: 200 LYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-------------ITVELPDGFMKLLA 246 SGLR S+ + L N ++ G+ ++ L +LLA Sbjct: 139 YASGLRVSELVTLRMVQLGLNEGVLRVTGKGSKERLVPFGEVAGLWLSRYLAGPRAELLA 198 Query: 247 MTPIGKETFFINNDKQK----MNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADA 300 F+ K M+ F K A +AG+ S H +R AT + Sbjct: 199 AKQSAD--VFVTVRGSKSGTAMSRIMFWGLVKRYALQAGIRVPLSPHTLRHAFATHLLNH 256 Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRLG 332 GA + G + YT A R RL Sbjct: 257 GADLRSVQMLLGHADISTTTIYTHIA-RDRLA 287 >gi|256424447|ref|YP_003125100.1| tyrosine recombinase XerD [Chitinophaga pinensis DSM 2588] gi|256039355|gb|ACU62899.1| tyrosine recombinase XerD [Chitinophaga pinensis DSM 2588] Length = 316 Score = 140 bits (353), Expect = 3e-31, Method: Composition-based stats. Identities = 48/279 (17%), Positives = 101/279 (36%), Gaps = 28/279 (10%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI-------RSGVESRKHTPSSAIQFL 137 SL+ NS ++ +++++ + + + + + T +S + + Sbjct: 35 RSLSANSIEAYLRDVEKLVQYLQSVNIQPPPDQVSLSDLQSCVRWIATLGMTATSQARII 94 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF----KSFWSEGSQPR 193 + ++ +++ ++ V +P + +E PK K + + E+++Q K+ EG + R Sbjct: 95 SGIKAFYRYLALEDVVRQDPTILLEAPKTKRQLPDVLSFEEIEQIIGQIKAGTPEGQRNR 154 Query: 194 LAFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQKTGTIITVEL-----------PDG 240 E + GLR S+ + H + K V + D Sbjct: 155 AILETMYSCGLRVSEVTNLQISQLHFDAGFIRV-VGKGDKERLVPIGSDAVKYINIYKDE 213 Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISA 298 + + ++ F+N + + K AG++K S H R AT Sbjct: 214 VRVHVPVKKGQEDILFLNRRGSALTRVMIFLVIKELTAAAGIDKQVSPHTFRHSFATHLV 273 Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 + GA + G +++ E YT DR L R Sbjct: 274 EGGADLRAVQEMLGHESITTTEIYTH-LDREYLRDTLQR 311 >gi|163791502|ref|ZP_02185908.1| integrase/recombinase XerD, putative [Carnobacterium sp. AT7] gi|159873225|gb|EDP67323.1| integrase/recombinase XerD, putative [Carnobacterium sp. AT7] Length = 296 Score = 140 bits (353), Expect = 3e-31, Method: Composition-based stats. Identities = 47/269 (17%), Positives = 104/269 (38%), Gaps = 24/269 (8%) Query: 85 GSLAVNSRISFESYFDQ---IIRKSGDFDYRKITTKHIRSGVESRKHTPSSA---IQFLT 138 L+ N+ S++ Q I ++ ++ +I + S ++ K SA I+ ++ Sbjct: 16 RGLSKNTIESYKRDISQYLTFIEENKLTEWVQIDRYVVLSFLQKLKENQKSAGTIIRMIS 75 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF----KSFWSEGSQPRL 194 +R ++ +++ +P L ++ PK+ + + + +++ + + + G + R Sbjct: 76 CLRQFHQFLKQEQLSLTDPMLHIDTPKKAQKLPKVLSIKEVDRLIETPNTGETLGLRDRA 135 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPI--- 250 E L +GLR S+ + L ++ I+T K + L D ++ + Sbjct: 136 MLEVLYATGLRVSELTELKLNDLHLSLGLIQTIGKGDKERILPLGDMAIEWIEKYRRYSR 195 Query: 251 --------GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300 F+N+ +K+ K KAG+ K + H +R AT + Sbjct: 196 SKLEKEGHRSPYLFLNHHGRKLTRQGVWKNLKILVKKAGIEKEVTPHTLRHSFATHLLEN 255 Query: 301 GATAHELMATYGWKTVDQAETYTKGADRI 329 GA + G + + YT + Sbjct: 256 GADLRVVQELLGHSDISTTQIYTHITKQR 284 >gi|154483615|ref|ZP_02026063.1| hypothetical protein EUBVEN_01319 [Eubacterium ventriosum ATCC 27560] gi|149735525|gb|EDM51411.1| hypothetical protein EUBVEN_01319 [Eubacterium ventriosum ATCC 27560] Length = 295 Score = 140 bits (353), Expect = 3e-31, Method: Composition-based stats. Identities = 41/270 (15%), Positives = 85/270 (31%), Gaps = 24/270 (8%) Query: 85 GSLAVNSRISFESYFDQIIR--KSGDFD-YRKITTKHIRSGVESRKHTPSSAIQF---LT 138 + N+ IS++ + G + + IT + ++ + + Sbjct: 16 KDTSSNTEISYKRDLTKFFEYLNIGSIEEIKNITKHDLEGYIKHLSDIGRATTTISRNVA 75 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRL 194 S++ F + +E + NP + ++ PK + T + S+ S + + Sbjct: 76 SIKAFFAYLYDEEIMKSNPSVGLKAPKIIKKVPEILTVSQVDALLEQPSKNSPKELRDKA 135 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET 254 E L +G+R ++ + + + V K L Sbjct: 136 MLELLYATGMRVTELITLKMDDVNLAQEYVVCHDRKKERIVPFGSDAKKALVRYITDGRE 195 Query: 255 FFI-----------NNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAG 301 + + N M+ F K KAG+ + H +R A+ + G Sbjct: 196 YLLGDNEDSVIMFPNCQGGAMSRQGFWKLIKMYGKKAGIETELTPHTLRHSFASHLVENG 255 Query: 302 ATAHELMATYGWKTVDQAETY-TKGADRIR 330 A + G + + Y T G R+R Sbjct: 256 ADLKSVQEMLGHSDISTTQIYMTSGNKRVR 285 >gi|84393959|ref|ZP_00992699.1| tyrosine recombinase [Vibrio splendidus 12B01] gi|84375403|gb|EAP92310.1| tyrosine recombinase [Vibrio splendidus 12B01] Length = 304 Score = 140 bits (353), Expect = 3e-31, Method: Composition-based stats. Identities = 43/278 (15%), Positives = 100/278 (35%), Gaps = 26/278 (9%) Query: 74 LISEYRKSAHW--GSLAVNSRISFESYFDQIIRKSGDFDYRKITT-----KHIRSGVESR 126 L+ ++ A W L+ N+ +S+ + +++ +YR + + + Sbjct: 13 LVEQFL-DAMWMERGLSENTLVSYRTDLSKLLTWMEKNNYRLDFISLSGLQDYQGWLADA 71 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF- 185 +S + L+++R LF++ R++ +P + PK + ++E + Sbjct: 72 DFKQTSRARMLSAIRRLFQYLHREKVRGDDPSALLISPKLPQRLPKDLSEEQVNALLEAP 131 Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGF 241 + + E L +GLR ++ ++++ ++ K G V + + Sbjct: 132 DPNDPIELRDKAMLELLYATGLRVTELVSLTMENISLRQGVVRVIGKGGKERLVPMGENA 191 Query: 242 MKLLAMTPIGK----------ETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHG 288 + + + F + ++M F K + AG++ S H Sbjct: 192 VDWIETFIEQGRPQLLGENSSDVVFPSKRAKQMTRQTFWYRIKHYSVVAGIDTELLSPHV 251 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 +R AT + GA + G + + YT A Sbjct: 252 LRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVA 289 >gi|296135962|ref|YP_003643204.1| tyrosine recombinase XerD [Thiomonas intermedia K12] gi|295796084|gb|ADG30874.1| tyrosine recombinase XerD [Thiomonas intermedia K12] Length = 317 Score = 140 bits (353), Expect = 3e-31, Method: Composition-based stats. Identities = 55/308 (17%), Positives = 108/308 (35%), Gaps = 33/308 (10%) Query: 59 EYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG---DFDYRKIT 115 E+ +P T+ L+ N+ ++ + R + T Sbjct: 9 EWPPAPEACAATIDRFCDALWLED---GLSPNTLAAYRRDLTLMARWLAFSRRPPLIEAT 65 Query: 116 TKHIRSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173 + +++ + +R + +S+ + L +R ++WA+R+ + +P L ++ ++ + Sbjct: 66 LRDVQAYIAARFVQSKATSSNRRLVVLRRFYRWALREHLRSDDPTLQLDTARQPPRRPKT 125 Query: 174 WTKEDMQQFKSF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQK 228 ++ ++ + G + R E L SGLR S+ V + + ++ K Sbjct: 126 LSEAQVEALLAAPEVDTPLGLRDRAMLELLYASGLRVSELVALPVVRVSLDQGVVQIAGK 185 Query: 229 TGTIITVELP----DGFMKLLAMT------PIGKETFFINND-------KQKMNATQFSI 271 G V D L F+ M F + Sbjct: 186 GGKERLVPFGSAAQDWLQNYLRTARHELLQGRDSPFLFVTARSGQSARETTGMTRQMFWM 245 Query: 272 WFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 KA A KAG++ S H +R AT + GA + G + + YT A R Sbjct: 246 RIKAYARKAGIDVPLSPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHIA-RE 304 Query: 330 RLGIKNSR 337 RL ++R Sbjct: 305 RLKTLHAR 312 >gi|28897283|ref|NP_796888.1| site-specific tyrosine recombinase XerD [Vibrio parahaemolyticus RIMD 2210633] gi|260363587|ref|ZP_05776407.1| tyrosine recombinase XerD [Vibrio parahaemolyticus K5030] gi|260876248|ref|ZP_05888603.1| tyrosine recombinase XerD [Vibrio parahaemolyticus AN-5034] gi|260896426|ref|ZP_05904922.1| tyrosine recombinase XerD [Vibrio parahaemolyticus Peru-466] gi|260902723|ref|ZP_05911118.1| tyrosine recombinase XerD [Vibrio parahaemolyticus AQ4037] gi|28805492|dbj|BAC58772.1| integrase/recombinase XerD [Vibrio parahaemolyticus RIMD 2210633] gi|308088405|gb|EFO38100.1| tyrosine recombinase XerD [Vibrio parahaemolyticus Peru-466] gi|308092863|gb|EFO42558.1| tyrosine recombinase XerD [Vibrio parahaemolyticus AN-5034] gi|308107651|gb|EFO45191.1| tyrosine recombinase XerD [Vibrio parahaemolyticus AQ4037] gi|308113317|gb|EFO50857.1| tyrosine recombinase XerD [Vibrio parahaemolyticus K5030] Length = 305 Score = 140 bits (353), Expect = 3e-31, Method: Composition-based stats. Identities = 46/279 (16%), Positives = 102/279 (36%), Gaps = 26/279 (9%) Query: 73 WLISEYRKSAHW--GSLAVNSRISFESYFDQIIRKSGDFDYRKITT-----KHIRSGVES 125 L+ ++ A W L+ N+ S+ + +++ YR + ++ + Sbjct: 13 ALVEQFL-DAMWMERGLSENTLASYRNDLMKLLTWMDHHRYRLDFISLSGLQEYQTYLVD 71 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + +S + L+++R LF++ R++ A +P + PK + ++E + Sbjct: 72 LDYKQTSRARMLSAIRRLFQYLHREKVRADDPSALLVSPKLPQRLPKDISEEQVDALLDA 131 Query: 186 ----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDG 240 + + E L +GLR ++ ++++ ++ T K G V + + Sbjct: 132 PDPNDPVELRDKAMLELLYATGLRVTELVSLTMENISLRQGVVRVTGKGGKERLVPMGEN 191 Query: 241 FMKLLAMTP----------IGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAH 287 + + + F + ++M F K A AG++ S H Sbjct: 192 AVDWIETFIQQGRPALLGETSSDVVFPSKRARQMTRQTFWHRIKYYAVIAGIDTDQLSPH 251 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 +R AT + GA + G + + YT A Sbjct: 252 VLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVA 290 >gi|255534331|ref|YP_003094702.1| Integrase [Flavobacteriaceae bacterium 3519-10] gi|255340527|gb|ACU06640.1| Integrase [Flavobacteriaceae bacterium 3519-10] Length = 302 Score = 140 bits (353), Expect = 3e-31, Method: Composition-based stats. Identities = 49/265 (18%), Positives = 93/265 (35%), Gaps = 25/265 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKS-------GDFDYRKITTKHIRSGVESRKHTPSSAIQFL 137 + + N+ ++ ++ + G + + + +K + S +++ Sbjct: 19 RNFSDNTLDAYLRDIRKLSDYAEFHLDGTGPLEISYENIQEYLFQLSKQKFSERSQARWI 78 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPR 193 +S++ FK+ E NP +E PK + ED+++ G + + Sbjct: 79 SSIKAFFKYLAEDEAREDNPTTLLESPKLGLYLPDTLSFEDVERIIKAINISTDLGRRNQ 138 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELP--------DGFMKL 244 E L GLR S+ + ++ +K K V L + ++ Sbjct: 139 CMIEVLYGCGLRVSELIDLKISNINFKELYLKVDGKGDKSRFVPLATYTAKLIKEYIQEI 198 Query: 245 LAMTPIGK---ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299 + I K + F+N+ M+ I K KAG+NK S H R AT Sbjct: 199 RSKYKINKKCEDVLFLNSRGSAMSRVIVFIIIKELTEKAGINKKISPHTFRHSFATHLLQ 258 Query: 300 AGATAHELMATYGWKTVDQAETYTK 324 GA + G ++ E YT Sbjct: 259 NGADLRYIQEMLGHSSITTTEIYTH 283 >gi|260062440|ref|YP_003195520.1| putative tyrosine recombinase [Robiginitalea biformata HTCC2501] gi|88784003|gb|EAR15174.1| putative tyrosine recombinase [Robiginitalea biformata HTCC2501] Length = 300 Score = 140 bits (353), Expect = 3e-31, Method: Composition-based stats. Identities = 48/289 (16%), Positives = 92/289 (31%), Gaps = 28/289 (9%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFD----QIIRKSGDFDYRKITTKHIRSGVES 125 + I++Y L+ NS S+ + + I K I + + Sbjct: 3 WEEAITDYLHYLRLERGLSENSVRSYRRDVRKLAGYLAENEPGITPKSIDRKDIEAFIHH 62 Query: 126 RK--HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 S + ++ ++ F + + + Y NP +E PK + + E++ + Sbjct: 63 VGTDLKARSQARLISGLKGFFGYLIFEGYRKDNPMDLIEAPKLGRKLPDTLSVEEIDRLV 122 Query: 184 SF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH--LQNNIFSIKTQKTGTIITVEL 237 + EG + E L GLR S+ + + T K V + Sbjct: 123 AEIDRSAPEGERNLAILETLYGCGLRVSELLGLRLSDLFFDEGFIKV-TGKGSKDRFVPI 181 Query: 238 PDGFMKLLAMTPIG-----------KETFFINNDKQKMNATQFSIWFKAKATKAGVNK-- 284 + + ++ F+N + ++ + A +AG+ K Sbjct: 182 GPYNRECILRYIREVRPHQQPQAGFEDVVFLNRRGRGLSRAMIFTIIRDLAARAGLRKNV 241 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 S H R AT GA + G +++ E Y DR L Sbjct: 242 SPHTFRHSFATHLLQNGADIRAIQQMLGHESITTTEVYMH-VDRTHLAE 289 >gi|261342297|ref|ZP_05970155.1| tyrosine recombinase XerD [Enterobacter cancerogenus ATCC 35316] gi|288315638|gb|EFC54576.1| tyrosine recombinase XerD [Enterobacter cancerogenus ATCC 35316] Length = 298 Score = 140 bits (353), Expect = 3e-31, Method: Composition-based stats. Identities = 51/284 (17%), Positives = 101/284 (35%), Gaps = 27/284 (9%) Query: 73 WLISEYRKSAHW--GSLAVNSRISFESYFDQI-----IRKSGDFDYRKITTKHIRSGVES 125 L+ ++ A W +LA N+ ++ + RK + + + Sbjct: 6 ALVEQFL-DALWLEKNLAENTLSAYRRDLTMLVEWLSRRKLSLETVQHDDLQALLGERVD 64 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + +S+ + L++MR LF+ R++ A +P + PK + ++ +++ Sbjct: 65 GGYKATSSARLLSAMRRLFQHLFREKIRADDPSALLASPKLPQRLPKDLSEAQVERLLQS 124 Query: 186 ----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG 240 + + E L +GLR S+ + + ++ K V L + Sbjct: 125 PAVDLPLELRDKAMLELLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEE 184 Query: 241 FMKLLAMTPIGKETFFIN----------NDKQKMNATQFSIWFKAKATKAGVN---KSAH 287 + L + +N Q+M F K AT AG++ S H Sbjct: 185 AVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYATLAGIDSEKLSPH 244 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIR 330 +R AT + GA + G + + YT A +R+R Sbjct: 245 VLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLR 288 >gi|86147402|ref|ZP_01065715.1| tyrosine recombinase [Vibrio sp. MED222] gi|85834830|gb|EAQ52975.1| tyrosine recombinase [Vibrio sp. MED222] Length = 304 Score = 140 bits (353), Expect = 3e-31, Method: Composition-based stats. Identities = 44/278 (15%), Positives = 101/278 (36%), Gaps = 26/278 (9%) Query: 74 LISEYRKSAHW--GSLAVNSRISFESYFDQIIRKSGDFDYRKITT-----KHIRSGVESR 126 L+ ++ A W L+ N+ +S+ + +++ +YR + + + Sbjct: 13 LVEQFL-DAMWMERGLSENTLVSYRTDLSKLLTWMEKNNYRLDFISLSGLQDYQGWLADA 71 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF- 185 +S + L+++R LF++ R++ A +P + PK + ++E + Sbjct: 72 DFKQTSRARMLSAIRRLFQYLHREKVRADDPSALLISPKLPKRLPKDLSEEQVDSLLEAP 131 Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGF 241 + + E L +GLR ++ ++++ ++ K G V + + Sbjct: 132 DPNDPIELRDKAMLELLYATGLRVTELVSLTMENISLRQGVVRVIGKGGKERLVPMGENA 191 Query: 242 MKLLAMTPIGK----------ETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHG 288 + + + F + ++M F K + AG++ S H Sbjct: 192 VDWIETFIEQGRPQLLGDNSSDVVFPSKRAKQMTRQTFWYRIKHYSVIAGIDTDLLSPHV 251 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 +R AT + GA + G + + YT A Sbjct: 252 LRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVA 289 >gi|153839359|ref|ZP_01992026.1| tyrosine recombinase XerD [Vibrio parahaemolyticus AQ3810] gi|149747107|gb|EDM58095.1| tyrosine recombinase XerD [Vibrio parahaemolyticus AQ3810] gi|328472047|gb|EGF42924.1| site-specific tyrosine recombinase XerD [Vibrio parahaemolyticus 10329] Length = 305 Score = 140 bits (353), Expect = 3e-31, Method: Composition-based stats. Identities = 46/279 (16%), Positives = 102/279 (36%), Gaps = 26/279 (9%) Query: 73 WLISEYRKSAHW--GSLAVNSRISFESYFDQIIRKSGDFDYRKITT-----KHIRSGVES 125 L+ ++ A W L+ N+ S+ + +++ YR + ++ + Sbjct: 13 ALVEQFL-DAMWMERGLSENTLASYRNDLMKLLTWMEHHRYRLDFISLSGLQEYQTYLVD 71 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + +S + L+++R LF++ R++ A +P + PK + ++E + Sbjct: 72 LDYKQTSRARMLSAIRRLFQYLHREKVRADDPSALLVSPKLPQRLPKDISEEQVDALLDA 131 Query: 186 ----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDG 240 + + E L +GLR ++ ++++ ++ T K G V + + Sbjct: 132 PDPNDPVELRDKAMLELLYATGLRVTELVSLTMENISLRQGVVRVTGKGGKERLVPMGEN 191 Query: 241 FMKLLAMTP----------IGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAH 287 + + + F + ++M F K A AG++ S H Sbjct: 192 AIDWIETFIQQGRPALLGETSSDVVFPSKRARQMTRQTFWHRIKYYAVIAGIDTDQLSPH 251 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 +R AT + GA + G + + YT A Sbjct: 252 VLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVA 290 >gi|91792109|ref|YP_561760.1| tyrosine recombinase XerD [Shewanella denitrificans OS217] gi|91714111|gb|ABE54037.1| Tyrosine recombinase XerD [Shewanella denitrificans OS217] Length = 303 Score = 140 bits (353), Expect = 3e-31, Method: Composition-based stats. Identities = 46/275 (16%), Positives = 96/275 (34%), Gaps = 23/275 (8%) Query: 85 GSLAVNSRISFESYFDQIIR-----KSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139 L+ N+ S+ + R + D + T + + + + SS+ + ++S Sbjct: 25 KGLSNNTLASYGTDLRHFQRYLAAQQLNLLDASQETVRQYLAWRQEQGFAKSSSARLMSS 84 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK----SFWSEGSQPRLA 195 +R + + + + +AI+PC + PK ++ ++ + + + Sbjct: 85 LRRFYAYWLSLKRIAIDPCAKLASPKLSRGLPAALSEAEVDALLSEPAADDPIEIRDKAM 144 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPD----------GFMKL 244 E L +GLR ++ + + ++ T K G V L + + Sbjct: 145 LELLYATGLRVTELVSLTMDQISLRQGLVRITGKGGKERLVPLGELAVAEVDTYLSLARS 204 Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGA 302 + E F + M F K A +A + S H +R AT + GA Sbjct: 205 ELLKGKQSEVLFPSKRGTMMTRQTFWHRIKHYALRASIATELSPHTLRHAFATHLLNHGA 264 Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 + G + + YT A + RL + + Sbjct: 265 DLRVVQLLLGHSDLSTTQIYTHVA-KARLQDLHRQ 298 >gi|194288692|ref|YP_002004599.1| site-specific tyrosine recombinase xerd [Cupriavidus taiwanensis LMG 19424] gi|193222527|emb|CAQ68530.1| site-specific tyrosine recombinase [Cupriavidus taiwanensis LMG 19424] Length = 312 Score = 140 bits (353), Expect = 3e-31, Method: Composition-based stats. Identities = 51/269 (18%), Positives = 91/269 (33%), Gaps = 24/269 (8%) Query: 86 SLAVNSRISFESYFDQII-----RKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSM 140 L+ N+ ++ + + G+ + SSA + L Sbjct: 34 GLSRNTIDAYRRDLTLLARWLQHEQRGELLDADDGALSAYFSARHTQTRASSANRRLAVF 93 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAF 196 R ++WA+R+ V ++PCL + K+ + ++ ++ G + R Sbjct: 94 RRFYQWALREHLVQVDPCLLLRPAKQPPRHPKTLSEAQVEALLEAPDTETPLGLRDRTML 153 Query: 197 EFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELP----DGFMKLLA---- 246 E + SGLR S+ + + + + K V D + LA Sbjct: 154 ELMYASGLRVSELTQMKTVEIGLNEGVARVVGGKGDKERLVPFGQQAGDWLRRYLASARP 213 Query: 247 --MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302 + + F+ + M F K A AGV+ S H +R AT + GA Sbjct: 214 VLLAGRACDALFVTQRGEGMTRQAFWHLIKRHARDAGVHAPLSPHTLRHAFATHLLNHGA 273 Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRL 331 + G + + YT A R RL Sbjct: 274 DLRVVQLLLGHADISTTQIYTHVA-RERL 301 >gi|186475291|ref|YP_001856761.1| site-specific tyrosine recombinase XerD [Burkholderia phymatum STM815] gi|184191750|gb|ACC69715.1| tyrosine recombinase XerD [Burkholderia phymatum STM815] Length = 315 Score = 140 bits (353), Expect = 3e-31, Method: Composition-based stats. Identities = 47/284 (16%), Positives = 85/284 (29%), Gaps = 25/284 (8%) Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE---- 124 ++ LA N+ ++ + + Sbjct: 25 ASIDAFCDALWLE---HGLARNTLDAYRRDLRLFSEWLAERRDASLDAASEADLTAYSAA 81 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 +SA + L+ R + WAVR+ + +P L + K+ T+ ++ Sbjct: 82 RSADKSTSANRRLSVFRRYYAWAVREHRASADPTLRIRSAKQPPRFPSTLTEAQVEALLG 141 Query: 185 F----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-IITVELPD 239 G + R E + SGLR S+ + N ++ G+ + + Sbjct: 142 APDVTTPLGLRDRTMLELMYASGLRVSELVTLKTVEVGLNEGVVRVMGKGSKERLIPFGE 201 Query: 240 GFMKLLAM----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAH 287 + + F+ + M QF K A A V+ S H Sbjct: 202 EAHAWIERYLRESRPALLGQRSADALFVTARAEGMTRQQFWNIIKRHALTAHVHAPLSPH 261 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 +R AT + GA + G + + YT A R RL Sbjct: 262 TLRHAFATHLLNHGADLRVVQLLLGHTDISTTQIYTHVA-RERL 304 >gi|121593407|ref|YP_985303.1| tyrosine recombinase XerD [Acidovorax sp. JS42] gi|222110117|ref|YP_002552381.1| tyrosine recombinase xerd [Acidovorax ebreus TPSY] gi|120605487|gb|ABM41227.1| tyrosine recombinase XerD [Acidovorax sp. JS42] gi|221729561|gb|ACM32381.1| tyrosine recombinase XerD [Acidovorax ebreus TPSY] Length = 303 Score = 140 bits (352), Expect = 3e-31, Method: Composition-based stats. Identities = 48/274 (17%), Positives = 93/274 (33%), Gaps = 23/274 (8%) Query: 86 SLAVNSRISFESYF----DQIIRKSGDFDYRKITTKHIRSGVESR--KHTPSSAIQFLTS 139 L+ N+ ++ + +++ H++ +R + +SA + LT Sbjct: 25 GLSRNTLAAYRRDLTLYAQWLAQQNPPLALDATAEHHLQGYFAARHAQTRATSANRRLTV 84 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195 +R F WA+R+ +A +P + ++ ++ + T+ ++ G + R Sbjct: 85 LRRYFHWALRERRIAADPTVRLQAARQPLRVPKTLTQAQVEALLHAPDDATPLGLRDRTM 144 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGK-- 252 E + SGLR S+ HL ++ K G V + + L Sbjct: 145 LELMYASGLRVSELVTLKTFHLGLAEGVLRVMGKGGKERLVPFGEEAHRWLQRYLAEGRG 204 Query: 253 --------ETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGA 302 + F+ M+ F + K A AG+ S H +R AT + GA Sbjct: 205 AILGGQQTDDLFVTQRGAAMSRVMFWVIVKKCAQAAGITAPLSPHTLRHAFATHLLNHGA 264 Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336 + G + YT A + Sbjct: 265 DLRVVQLLLGHADISTTTIYTHVARERLKALHAQ 298 >gi|311068948|ref|YP_003973871.1| site-specific tyrosine recombinase XerD [Bacillus atrophaeus 1942] gi|310869465|gb|ADP32940.1| site-specific tyrosine recombinase XerD [Bacillus atrophaeus 1942] Length = 296 Score = 140 bits (352), Expect = 4e-31, Method: Composition-based stats. Identities = 43/264 (16%), Positives = 99/264 (37%), Gaps = 24/264 (9%) Query: 85 GSLAVNSRISFESYFDQ----IIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI---QFL 137 L+ N+ +S+E + + ++T HI ++ K + S + L Sbjct: 16 RGLSQNTMMSYERDLKSYSLFLTETLQVTSWNEVTRIHIIQYLKHLKDSGKSGKTSARHL 75 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPR 193 S+R ++ +R++ +P + +E K + + + ++++ G + + Sbjct: 76 ASIRSFHQFLLREKVTDKDPSVHIETQKTERTLPKVLSLKEVELLLDTPKLTSPFGYRDK 135 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLA---MTP 249 E L +G+R S+ + ++ ++ K V + + + Sbjct: 136 AMLELLYATGIRVSEMIDLKTSDVHLSMGFVRCFGKGRKERIVPIGETAAHAIEEYLAKA 195 Query: 250 IGK-------ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300 GK + F+N+ ++++ F K A +AG+ K + H +R AT + Sbjct: 196 RGKLLKKNVSDALFLNHHGKQISRQGFWKNLKKIALEAGIKKELTPHTLRHSFATHLLEN 255 Query: 301 GATAHELMATYGWKTVDQAETYTK 324 GA + G + + YT Sbjct: 256 GADLRAVQEMLGHADISTTQIYTH 279 >gi|241758661|ref|ZP_04756775.1| tyrosine recombinase XerD [Neisseria flavescens SK114] gi|241321172|gb|EER57368.1| tyrosine recombinase XerD [Neisseria flavescens SK114] Length = 293 Score = 140 bits (352), Expect = 4e-31, Method: Composition-based stats. Identities = 44/277 (15%), Positives = 100/277 (36%), Gaps = 19/277 (6%) Query: 70 TLKWLISEYRKSAHWGS-LAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR--SGVESR 126 ++ LI + +S L+ N+ S+ ++ + + ++ V + Sbjct: 3 SMDDLIDKLLESLWLQDRLSHNTLQSYRRDLVKVAARLAECGQDWLSADEFALSDSVYAE 62 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF- 185 +S + L++ + ++ W A NP ++ PK + + T+ + + Sbjct: 63 GEKSTSQARALSACKRMYGWLEETGQRADNPTRFLKAPKSERKLPTLITEAQIDALLAAP 122 Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT-VELPDGF 241 S G + + E + +GLR +++ + + + + SI+T G + V L Sbjct: 123 DVETSHGLRDKALLEVMYATGLRVTEAVKLTLSDIDLHRGSIRTIGKGDKLRLVPLGQEA 182 Query: 242 MKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVR 290 + F++ + ++ + K A AG+ S HG+R Sbjct: 183 AYWVERYCNESRPLLLKNKICDEVFVSQKRSGISRQLAWMIVKEYAEAAGIASLSPHGLR 242 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 AT + G + G ++ + YT A+ Sbjct: 243 HAFATHLVNHGVDLRSVQMMLGHSDINTTQIYTHVAN 279 >gi|331082291|ref|ZP_08331417.1| hypothetical protein HMPREF0992_00341 [Lachnospiraceae bacterium 6_1_63FAA] gi|330400777|gb|EGG80378.1| hypothetical protein HMPREF0992_00341 [Lachnospiraceae bacterium 6_1_63FAA] Length = 294 Score = 140 bits (352), Expect = 4e-31, Method: Composition-based stats. Identities = 43/257 (16%), Positives = 101/257 (39%), Gaps = 22/257 (8%) Query: 88 AVNSRISFESYF---DQIIRKSGDFDYRKITTK---HIRSGVESRKHTPSSAIQFLTSMR 141 + N+ +S+E +Q +++ G ++ +++ +E + SS + + S+R Sbjct: 19 SRNTEVSYERDLKKLEQFLKQEGILEWHQVSAVLLNSYIMYLERKNFAASSISRSVASIR 78 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ----QFKSFWSEGSQPRLAFE 197 F++ ++E NP ++ PK + + T +++ Q K ++G + R E Sbjct: 79 AFFQYLCQRECWRENPAEGLKAPKIEKKAPGILTVDEVDLLLSQPKENTAKGVRDRAMLE 138 Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP-------DGFMKLLAMTPI 250 L +G+R S+ ++ + + + ++ + + +M + Sbjct: 139 LLYATGIRVSELIHLTLRDVNLKLGYLTCSQSERERVIPFGATAKTAVEAYMAWARAELL 198 Query: 251 GKET---FFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAH 305 G+ + F+N + M+ F K A AG+ + + H +R A GA Sbjct: 199 GENSSEWLFVNCSGKSMSRQGFWKILKGYAVSAGIQQDITPHTLRHSFAAHLVQNGADLK 258 Query: 306 ELMATYGWKTVDQAETY 322 + G + + Y Sbjct: 259 SVQEMMGHSDISTTQIY 275 >gi|146329514|ref|YP_001210015.1| tyrosine recombinase XerD [Dichelobacter nodosus VCS1703A] gi|146232984|gb|ABQ13962.1| tyrosine recombinase XerD [Dichelobacter nodosus VCS1703A] Length = 297 Score = 140 bits (352), Expect = 4e-31, Method: Composition-based stats. Identities = 40/265 (15%), Positives = 90/265 (33%), Gaps = 21/265 (7%) Query: 86 SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI---RSGVESRKHTPSSAIQFLTSMRV 142 L+ + ++ Q+ + D + T + + + R ++ +S + +S+ Sbjct: 21 GLSDATLSAYRGDLQQVQKILADVPLKSATIEQMMQVLAQFHDRGYSHTSMARMRSSLNR 80 Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRLAFEF 198 F + + Q+ NP + R K + + ++ D++ S G + R E Sbjct: 81 FFSYQIEQKERTENPMHFLGRTKIRRHLPQTMSESDVEALLSAPDVQTILGLRDRAMLEL 140 Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVEL----PDGFMKLLAMTPIG-- 251 L GLR S+ + + ++ ++ K V + + + Sbjct: 141 LYACGLRVSELVGLTLHQIALDVGYVQILGKGDKERLVPFGEIAHEWLQRYIQEARPQLL 200 Query: 252 ----KETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATA 304 + F++ ++ F K G++ S H +R A+ GA Sbjct: 201 GQKMSDYVFVSQRGAALSRQAFWYRLKVYVCAVGLDSNKISPHTLRHAFASHLLAHGADL 260 Query: 305 HELMATYGWKTVDQAETYTKGADRI 329 + G + + YT AD+ Sbjct: 261 RSIQMLLGHSDLSTTQIYTHIADQR 285 >gi|261820181|ref|YP_003258287.1| site-specific tyrosine recombinase XerD [Pectobacterium wasabiae WPP163] gi|261604194|gb|ACX86680.1| tyrosine recombinase XerD [Pectobacterium wasabiae WPP163] Length = 299 Score = 140 bits (352), Expect = 4e-31, Method: Composition-based stats. Identities = 45/280 (16%), Positives = 96/280 (34%), Gaps = 26/280 (9%) Query: 72 KWLISEYRKSAHW--GSLAVNSRISFESYFDQIIRKSGDFD-----YRKITTKHIRSGVE 124 + LI ++ A W +LA N+ S+ + D + + + + Sbjct: 6 QALIEQFL-DALWLERNLAENTLASYRLDLRTLAEWLAHRDNDFLQVQALDLQAFLADRV 64 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 + +S+ + L++MR F++ R++ + +P + PK + ++ + Sbjct: 65 DGGYKATSSARLLSAMRRFFQYLYREKLRSDDPSAVLSSPKLPLRLPKDLSEAQVGALLD 124 Query: 185 F----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPD 239 + + E L +GLR S+ + + ++ K V L + Sbjct: 125 APSIEQPLELRDKAMLEVLYATGLRVSELVGLTMSDVSLRQGVVRVLGKGNKERLVPLGE 184 Query: 240 GFMKLLAMTPIGKETFFIN----------NDKQKMNATQFSIWFKAKATKAGVN---KSA 286 + + + +N N ++M F K A +A ++ S Sbjct: 185 EAVYWIEYYLEHGRPWLLNGQTLDVLFPSNRARQMTRQTFWHRIKHYAVQASIDSEKLSP 244 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 H +R AT + GA + G + + YT A Sbjct: 245 HVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA 284 >gi|114331486|ref|YP_747708.1| phage integrase family protein [Nitrosomonas eutropha C91] gi|114308500|gb|ABI59743.1| phage integrase family protein [Nitrosomonas eutropha C91] Length = 341 Score = 140 bits (352), Expect = 4e-31, Method: Composition-based stats. Identities = 63/344 (18%), Positives = 116/344 (33%), Gaps = 34/344 (9%) Query: 7 LPPFVTKE-------RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKRE 59 PP++ K R R KI YY+ G R + + Y A+ Sbjct: 3 RPPYIHKNLPARMRARQRGKKIYYYYDTGGKPRKEISLGTD------YAIAVKKWAELEI 56 Query: 60 YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTK 117 + T +++ Y + A ++ S + + R D +I Sbjct: 57 DAKPKHNQIITFRYVAERYMREIMATK-APRTQKDNLSEIEWLYRFFDDPPAPLEEIEPI 115 Query: 118 HIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVA-INPCLSVERPKRKTEGIRPWTK 176 HIR ++ R+ + A + ++ A Y + NPC ++ + K Sbjct: 116 HIRQYLDQRQAK-TRANREKALFSHIWNKAREWGYTSLPNPCAGIKGNREKGRKDVYIED 174 Query: 177 EDMQQFKSFWSEGSQP-RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235 + + + + S P R A + +G R +D L + ++K QKTG + + Sbjct: 175 ---EIYMAVYKVASHPLRDAMDMAYLTGQRPADILALRESDLTDGRINVKQQKTGKKLRI 231 Query: 236 ELPDGFMKLLAMTPIGK-------ETFFINNDKQKMNATQFSIWFKAKATKAGVNK---S 285 +L L+ K ++ QK++ T F AG+ K Sbjct: 232 KLEGELAALIDRIKSRKVKHTIRSLYLIVDETGQKLSYTTLRSHFDKARELAGIKKEEFQ 291 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 +R + T A++ + G + ETY + DR Sbjct: 292 FRDLRAKAGTDKAESSGDIRQAQKQLGHANITMTETYIR--DRK 333 >gi|256847147|ref|ZP_05552593.1| tyrosine recombinase XerD [Lactobacillus coleohominis 101-4-CHN] gi|256715811|gb|EEU30786.1| tyrosine recombinase XerD [Lactobacillus coleohominis 101-4-CHN] Length = 296 Score = 140 bits (352), Expect = 4e-31, Method: Composition-based stats. Identities = 39/273 (14%), Positives = 98/273 (35%), Gaps = 24/273 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH------TPSSAIQFLT 138 L+ N+ S+++ + + + + H + ++ + ++ Sbjct: 16 RGLSNNTIQSYQNDLKKAAEYFTSQNLSSWGDIDRYAVLNLLAHLTNLGQSRTTIGRQVS 75 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRL 194 S+R +++ +RQ V +P V PK + T++++++ + G + R Sbjct: 76 SLRQFYQYLLRQHRVMNDPMALVTIPKGQRHLPTVLTQDEVRRMLAVPDTGKKMGIRDRA 135 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFMKLLA------- 246 E + +G+R S+ + L ++ ++ + G + + + L Sbjct: 136 ILEVMYATGMRVSELTNLRLNDLHLDVHLVQPRGKGDKERIIPIGEVAESWLNRYLHSVR 195 Query: 247 ----MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300 + F+N +++ K A A ++K + H +R AT + Sbjct: 196 APQLANKPASDFVFLNARAKQLTRQAIWQLIKKTAQAAKIDKDVTPHTMRHSFATHLLEN 255 Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 GA + G + + YT + + L + Sbjct: 256 GADLRVVQELLGHSDITTTQIYTHVSQKRLLTV 288 >gi|315023982|gb|EFT36984.1| tyrosine recombinase XerD [Riemerella anatipestifer RA-YM] Length = 303 Score = 140 bits (352), Expect = 4e-31, Method: Composition-based stats. Identities = 52/276 (18%), Positives = 95/276 (34%), Gaps = 26/276 (9%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQI-------IRKSGDFDYRKITTKHIRSGVESR 126 I ++ + + +L+ N+ ++ ++ + + D + + Sbjct: 7 IQDFANALKFEKNLSNNTIDAYTRDIKKLQYFAENKLNDTSALDISYEQIQEYLYQISKN 66 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ----QF 182 S ++++S++ FK+ E A NP +E PK E+++ Sbjct: 67 YTNERSQSRWISSIKAFFKFLHEDELRADNPARLLETPKLGLYLPDTLNFEEIESLIEAI 126 Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELP--- 238 S G + E L GLR S+ + +L F I K G V L Sbjct: 127 DKTTSLGKRNHTIIETLYGCGLRVSELVELKISNLNFEEEFIIVDGKGGKTRLVPLAQYT 186 Query: 239 -----DGFMKL---LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHG 288 D +++ + + P + F+N K+ I K A +A + K S H Sbjct: 187 AELIKDYLLEVRSEIKINPKHSDILFLNRRGSKLTRVMVFIIIKDLALQANIKKNISPHT 246 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 R AT GA + G ++ E YT Sbjct: 247 FRHSFATHLLKNGADLRYIQEMLGHSSITTTEIYTH 282 >gi|296332285|ref|ZP_06874747.1| site-specific tyrosine recombinase XerD [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305674986|ref|YP_003866658.1| site-specific tyrosine recombinase for chromosome partitioning [Bacillus subtilis subsp. spizizenii str. W23] gi|296150599|gb|EFG91486.1| site-specific tyrosine recombinase XerD [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305413230|gb|ADM38349.1| site-specific tyrosine recombinase for chromosome partitioning [Bacillus subtilis subsp. spizizenii str. W23] Length = 296 Score = 140 bits (352), Expect = 4e-31, Method: Composition-based stats. Identities = 41/264 (15%), Positives = 96/264 (36%), Gaps = 24/264 (9%) Query: 85 GSLAVNSRISFESYFD----QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI---QFL 137 L+ N+ +S+E + D+ +T HI ++ K + S + L Sbjct: 16 RGLSQNTVVSYERDLKSYSLYLTETLHVTDWNHVTRIHIIQYLKHLKDSGKSGKTSARHL 75 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPR 193 S+R ++ +R++ +P + +E K + + ++++ G + + Sbjct: 76 ASIRSFHQFLLREKVTDKDPSVHIETQKTERALPKVLALNEVERLLDTPKLTSPFGYRDK 135 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGK 252 E L +G+R S+ + ++ ++ K V + + + Sbjct: 136 AMLELLYATGIRVSEMIELKTADVHLSMGFVRCFGKGRKERIVPIGEAAASAIEEYITKA 195 Query: 253 ----------ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300 + F+N+ ++++ F K A +AG+ K + H +R A+ + Sbjct: 196 RGKLLKNNVSDALFLNHHGKQISRQGFWKNLKKIALEAGIKKELTPHTLRHSFASHLLEN 255 Query: 301 GATAHELMATYGWKTVDQAETYTK 324 GA + G + + YT Sbjct: 256 GADLRAVQEMLGHADISTTQIYTH 279 >gi|284008429|emb|CBA74880.1| tyrosine recombinase [Arsenophonus nasoniae] Length = 303 Score = 140 bits (352), Expect = 4e-31, Method: Composition-based stats. Identities = 48/283 (16%), Positives = 95/283 (33%), Gaps = 27/283 (9%) Query: 74 LISEYRKSAHW--GSLAVNSRISFESYFDQI-----IRKSGDFDYRKITTKHIRSGVESR 126 LI ++ + W LA N+ S+ + + + + + + Sbjct: 12 LIEQFLDTI-WLEHDLAANTLSSYRTDLQTLVGWLSRQGYDLLTVGVMDLQSFLAERVEG 70 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF- 185 + +S+ + L++MR LF++ R++ +P + PK + ++ ++ Sbjct: 71 GYKATSSARLLSAMRRLFQYFYREKLRTDDPTAQLSAPKLPKRLPKDLNEKQVEDLLHAP 130 Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGF 241 + + E L GLR S+ + + I+ G V L + Sbjct: 131 TTQDPIELRDKTMLEVLYACGLRVSELVGLTLTDISLRQGVIRVVGKGNKERLVPLGEEA 190 Query: 242 MKLLAMTPIGKETFFIN----------NDKQKMNATQFSIWFKAKATKAGVN---KSAHG 288 + L +N +M F K A AG++ S H Sbjct: 191 IYWLETYLTESRPILLNGLTNDVLFPSKRGTQMTRQTFWHRIKYYAAIAGIDSAKLSPHV 250 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIR 330 +R AT + GA + G + + YT A +R+R Sbjct: 251 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLR 293 >gi|329296874|ref|ZP_08254210.1| tyrosine recombinase XerD [Plautia stali symbiont] Length = 297 Score = 140 bits (352), Expect = 4e-31, Method: Composition-based stats. Identities = 51/285 (17%), Positives = 106/285 (37%), Gaps = 27/285 (9%) Query: 72 KWLISEYRKSAHW--GSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGVESR- 126 LI ++ A W +LA N+ S+ + + + ++ + R Sbjct: 4 SDLIEQFL-DALWTERNLAQNTLASYRQDLQTLTAWLHHHERTLLSLEAADLQQFLAERI 62 Query: 127 --KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 + +S+ + L++MR LF++ R++ + +P + PK + ++ +++ Sbjct: 63 EGGYKATSSARTLSAMRRLFQYLYREKLRSDDPSALLSAPKLPQRLPKDLSENQVERLLQ 122 Query: 185 F----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT------ 234 + + E L +GLR S+ + + ++ G Sbjct: 123 APATDIPLELRDKAMLELLYATGLRVSELVGLTLSDVSLRQGVVRVIGKGNKERLVPLGE 182 Query: 235 --VELPDGFMKLLAMTPIGKETF---FINNDKQKMNATQFSIWFKAKATKAGVN---KSA 286 + + +M+ + +T F +N Q+M F K AT AG++ S Sbjct: 183 EAIYWLEHYMEHGRPWLLNGQTIDVLFPSNRAQQMTRQTFWHRIKHYATLAGIDSEKLSP 242 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIR 330 H +R AT + GA + G + + YT A +R+R Sbjct: 243 HVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLR 287 >gi|288926604|ref|ZP_06420520.1| integrase/recombinase XerD [Prevotella buccae D17] gi|288336626|gb|EFC74996.1| integrase/recombinase XerD [Prevotella buccae D17] Length = 304 Score = 140 bits (352), Expect = 4e-31, Method: Composition-based stats. Identities = 45/278 (16%), Positives = 98/278 (35%), Gaps = 24/278 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTK-----HIRSGVESRKHTPSSAIQFLTS 139 + + N+ ++ ++ + + + + + + + S + L+ Sbjct: 23 RNYSENTVEAYRHDLGYLMAFLKERGLAAVDAELSDMEEFAATLHEKNVSARSQSRILSG 82 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRLA 195 +R +++ Y+ +P + P+ + E++ + EG + + Sbjct: 83 VRSFYRFLRLDGYMETDPTELLGSPQTGEHLPEYLSTEEVDLLEGSIDLSKWEGQRNKAI 142 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMK----------L 244 E L GLR S+ L ++ K V + ++ L Sbjct: 143 IEVLFSCGLRVSELVNLKFSDLFPEEKFVRVIGKGNKERLVPISSSALRQLELWYMDRNL 202 Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302 + + P ++ F+N + T I K +A AG+ K S H +R AT GA Sbjct: 203 MTIKPGEEDYVFLNRRGHHLTRTMILIMIKRQAVAAGIKKTISPHTLRHSFATALLKGGA 262 Query: 303 TAHELMATYGWKTVDQAETYTK--GADRIRLGIKNSRR 338 + A G +++ E YT +D R +++ R Sbjct: 263 DLRAIQAMLGHESIGTTEVYTHLETSDLRREILEHHPR 300 >gi|315607090|ref|ZP_07882094.1| integrase/recombinase XerD [Prevotella buccae ATCC 33574] gi|315251144|gb|EFU31129.1| integrase/recombinase XerD [Prevotella buccae ATCC 33574] Length = 313 Score = 140 bits (352), Expect = 4e-31, Method: Composition-based stats. Identities = 45/278 (16%), Positives = 98/278 (35%), Gaps = 24/278 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTK-----HIRSGVESRKHTPSSAIQFLTS 139 + + N+ ++ ++ + + + + + + + S + L+ Sbjct: 32 RNYSENTVEAYRHDLGYLMAFLKERGLAAVDAELSDMEEFAATLHEKNVSARSQSRILSG 91 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRLA 195 +R +++ Y+ +P + P+ + E++ + EG + + Sbjct: 92 VRSFYRFLRLDGYMETDPTELLGSPQTGEHLPEYLSTEEVDLLEGSIDLSKWEGQRNKAI 151 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMK----------L 244 E L GLR S+ L ++ K V + ++ L Sbjct: 152 IEVLFSCGLRVSELVNLKFSDLFPEEKFVRVIGKGNKERLVPISSSALRQLELWYMDRNL 211 Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302 + + P ++ F+N + T I K +A AG+ K S H +R AT GA Sbjct: 212 MTIKPGEEDYVFLNRRGHHLTRTMILIMIKRQAVAAGIKKTISPHTLRHSFATALLKGGA 271 Query: 303 TAHELMATYGWKTVDQAETYTK--GADRIRLGIKNSRR 338 + A G +++ E YT +D R +++ R Sbjct: 272 DLRAIQAMLGHESIGTTEVYTHLETSDLRREILEHHPR 309 >gi|170725258|ref|YP_001759284.1| tyrosine recombinase XerD [Shewanella woodyi ATCC 51908] gi|169810605|gb|ACA85189.1| tyrosine recombinase XerD [Shewanella woodyi ATCC 51908] Length = 308 Score = 140 bits (352), Expect = 4e-31, Method: Composition-based stats. Identities = 46/275 (16%), Positives = 100/275 (36%), Gaps = 23/275 (8%) Query: 85 GSLAVNSRISFES---YFDQIIRKSG--DFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139 L+ N+ ++ + +F+ + KSG D + T + + +S+ + ++S Sbjct: 30 RGLSSNTLSAYRTDLCHFEHYLIKSGIALCDATQGTIRDYLDVRFEKGFARTSSARLISS 89 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195 +R + + V Q + ++P ++ P+ + ++ D+ S + + Sbjct: 90 LRRFYGFLVIQNRIEVDPTAQIKSPQLARKLPDSLSEADVDSLLSEPNLDDPIECRDKAM 149 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSI---------KTQKTGTIITVELPDGFMKLLA 246 E L +GLR ++ ++ + + + G + E+ + Sbjct: 150 LELLYATGLRVTELVSLTMEQISLRQGVVRVVGKGGKERLVPLGEMAISEVESYLVAARG 209 Query: 247 MTPIGKET--FFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGA 302 K + F + M F K A +AG+ + S H +R AT + GA Sbjct: 210 ELLKQKMSDVLFPSKRGSMMTRQTFWHRIKHYALRAGISTDLSPHTLRHAFATHLLNHGA 269 Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 + G + + YT A + RL +S Sbjct: 270 DLRVVQLLLGHSDLSTTQIYTHVA-KARLSQLHSE 303 >gi|290475797|ref|YP_003468688.1| putative integrase [Xenorhabdus bovienii SS-2004] gi|289175121|emb|CBJ81924.1| putative integrase [Xenorhabdus bovienii SS-2004] Length = 326 Score = 140 bits (352), Expect = 4e-31, Method: Composition-based stats. Identities = 67/336 (19%), Positives = 114/336 (33%), Gaps = 39/336 (11%) Query: 7 LPPFVTKERTRHGKIIYYFRKGHGRRIRLPY--PHESTFIPAYMSALTGSTPKREYINSP 64 +PP V + G+ Y F+ GR IRL +S Y + Sbjct: 1 MPPRVFR-----GRSAYEFKHPDGRTIRLCALIVDKSVVWNHYEQLVNEE---------- 45 Query: 65 RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124 K T L+ ++ SA + LA +++ + Y +++ G + I HIR ++ Sbjct: 46 -KATFTYGSLVDDFLHSADFIELAKDTQSDYRKYSKKVVPVFGKMNPNNIRPDHIRKYMD 104 Query: 125 SRK-HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 R + + A + + M +F+W + V NPC V++ + + R T + Q Sbjct: 105 KRGLQSRTQANREKSFMSRVFRWGYERGLVKKNPCQGVKQYRENSRE-RYITDAEYQALY 163 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243 + ++A E R D L IK KTG + K Sbjct: 164 EVSP--TVIQVAMEIAYLCCARQKDILALSKSQLMEAGIYIKQHKTGKSQIKGWSERLRK 221 Query: 244 LLAMT-------PIGKETFFINNDKQKMNATQF-SIWFKAKATKAG------VNKSAHGV 289 + + + + + + F S W KAK A N + H + Sbjct: 222 AIKLANSLPLKEGLHSLYVIHQANGKIYSRDGFNSRWLKAKEIAAQKYPELRFNFTFHDL 281 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 K + T E A G K + Q Y + Sbjct: 282 -KAKGISDLE--GTLQEKQAISGHKDIGQTARYDRK 314 >gi|156740074|ref|YP_001430203.1| integrase family protein [Roseiflexus castenholzii DSM 13941] gi|254799355|sp|A7NFG3|XERC_ROSCS RecName: Full=Tyrosine recombinase xerC gi|156231402|gb|ABU56185.1| integrase family protein [Roseiflexus castenholzii DSM 13941] Length = 314 Score = 140 bits (352), Expect = 4e-31, Method: Composition-based stats. Identities = 40/276 (14%), Positives = 96/276 (34%), Gaps = 26/276 (9%) Query: 75 ISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDF------DYRKITTKHIRSGVESRK 127 + + + A +L+ N+ ++ + +Q D + R+ Sbjct: 5 VEAFLRHLADERNLSANTIAAYRTDLEQFCEFLHGRRLFAWHDVTHDDVLAFLIDLRERR 64 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF----- 182 + S+ + + +++ F + + V +P ++ PK + R T + + Sbjct: 65 YASSTVARRVAAVKSFFTFLTGRGIVQRDPTERIDSPKVDRDLPRALTPRQVDELLELPL 124 Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGF 241 +S E + + E L +G+R S+ V + ++ K G + + + Sbjct: 125 RSPTPERIRDKAMLELLYATGVRVSELVALNVNDVDLERNEVRCIGKNGRVRVLPINGSA 184 Query: 242 MKLL------------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHG 288 L + E F+N+ +++ F + K A + G+ + + H Sbjct: 185 ATALEEYFDISRNQLARGSGSSTEALFLNHRGKRLTRQGFWLILKQYAEELGLSDLTPHV 244 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 +R A +AG + G ++ + YT Sbjct: 245 LRHSFAVHMLNAGFDLRAVQELLGHTSISTTQIYTH 280 >gi|153810458|ref|ZP_01963126.1| hypothetical protein RUMOBE_00839 [Ruminococcus obeum ATCC 29174] gi|149833637|gb|EDM88718.1| hypothetical protein RUMOBE_00839 [Ruminococcus obeum ATCC 29174] Length = 296 Score = 139 bits (351), Expect = 4e-31, Method: Composition-based stats. Identities = 40/283 (14%), Positives = 100/283 (35%), Gaps = 25/283 (8%) Query: 77 EYRKSAHWGSLAVNSRISFESYFDQIIRKSGD------FDYRKITTKHIRSGVESRKHTP 130 Y + A + N+ IS+E ++ R + + K + ++ Sbjct: 12 AYMREA--KKASQNTEISYERDLKKLARYLRNQKIMDFSEVTKTDLQGYLKELQKENLAL 69 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----W 186 S+ + + S+R L+ + +R + +P +++ PK + + + E++ + Sbjct: 70 STISRNIASIRALYHYMIRTGKMQEDPSETLKPPKLEKKMPEILSVEEVDRLLKQPNLNT 129 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD------- 239 +G + E + +G+R S+ + + + + + + + + Sbjct: 130 PKGIRDNAMMELMYATGMRVSELIHLQITDINLQMGYVICHDSEKERIIPIGNVSRNAIL 189 Query: 240 GFMKLLAMTPIGK---ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSA 294 +M+ + + F N + M+ F K A AG+++ + H +R A Sbjct: 190 QYMEHSRGFFVKNKKESSLFTNCSGKSMSRQGFWKVLKGYAVDAGIHRDITPHTLRHSFA 249 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 GA + G + + Y G + R+ + Sbjct: 250 VHMLQNGADVKSVQEMLGHSDISSTQIYL-GMNVARMRDVYMK 291 >gi|329905896|ref|ZP_08274277.1| site-specific tyrosine recombinase [Oxalobacteraceae bacterium IMCC9480] gi|327547427|gb|EGF32250.1| site-specific tyrosine recombinase [Oxalobacteraceae bacterium IMCC9480] Length = 304 Score = 139 bits (351), Expect = 4e-31, Method: Composition-based stats. Identities = 46/273 (16%), Positives = 98/273 (35%), Gaps = 23/273 (8%) Query: 86 SLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSGVESR--KHTPSSAIQFLTSM 140 LA NS ++ + ++ +T I + +R ++A + L + Sbjct: 27 GLAKNSLEAYRRDLTAFALWLAQASQTGLLAVTGADINAYFAARHDASKATTANRRLAVL 86 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAF 196 + ++ A+R + ++ +PCL + K+ + ++ +++ + G + R Sbjct: 87 KRFYQLALRNKQISDDPCLKLHSAKQPPRFPKTLSEANVEALLAAPDVSTPLGLRDRTML 146 Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT-VELPDGFMKLLAMTPIG---- 251 E + SGLR ++ L N ++ G V + + + Sbjct: 147 ELMYASGLRVTELVLLKSIELSLNDGVVRVTGKGNKTRLVPFGEEARSWIERYLLEARAQ 206 Query: 252 ------KETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGAT 303 + F+ M F + K A +A ++ S H +R AT + GA Sbjct: 207 ILDGQMDDALFVTARGGPMTRQMFWVVVKKCAVRADIHAPLSPHTLRHAFATHLLNHGAD 266 Query: 304 AHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336 + G + + YT A R RL + ++ Sbjct: 267 LRVVQLLLGHADISTTQIYTHVA-RERLKVLHA 298 >gi|261364728|ref|ZP_05977611.1| tyrosine recombinase XerD [Neisseria mucosa ATCC 25996] gi|288567026|gb|EFC88586.1| tyrosine recombinase XerD [Neisseria mucosa ATCC 25996] Length = 291 Score = 139 bits (351), Expect = 4e-31, Method: Composition-based stats. Identities = 45/273 (16%), Positives = 101/273 (36%), Gaps = 19/273 (6%) Query: 74 LISEYRKSAHWGS-LAVNSRISFESYFDQIIRKSGDFDYRKI--TTKHIRSGVESRKHTP 130 LI + +S L+ N+ + ++I + + Y + + V + Sbjct: 5 LIDKLLESLWLQDRLSHNTLQGYRRDLEKIAARLEEGGYTWLNAEVADLADAVYAADEKH 64 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----W 186 SS + L++ + L+ W E NP ++ PK+ + T+ +++ + Sbjct: 65 SSQARALSACKRLYAWLEETERRTDNPTRFLKAPKQTQKLPTLITEAQIEKLLAAPDTET 124 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-ELPDGFMKLL 245 G + + E + +GLR +++ + + L N I+T G + + + + + + Sbjct: 125 PHGLRDKALLEVMYATGLRVTEAVKLQLGDLDLNRGCIRTIGKGDKLRIVPMGEEAVYWV 184 Query: 246 AMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSA 294 F++ + ++ + K A AG+ S HG+R A Sbjct: 185 ERYCAESRPLLLKNKICDEVFVSQKRSGISRQLAWMIVKNYAETAGITSLSPHGLRHAFA 244 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGAD 327 T + G + G ++ + YT A+ Sbjct: 245 THLVNHGVDLRAVQLMLGHANINTTQIYTHVAN 277 >gi|261345596|ref|ZP_05973240.1| tyrosine recombinase XerD [Providencia rustigianii DSM 4541] gi|282566076|gb|EFB71611.1| tyrosine recombinase XerD [Providencia rustigianii DSM 4541] Length = 300 Score = 139 bits (351), Expect = 5e-31, Method: Composition-based stats. Identities = 48/283 (16%), Positives = 100/283 (35%), Gaps = 27/283 (9%) Query: 74 LISEYRKSAHW--GSLAVNSRISFESYFDQI-----IRKSGDFDYRKITTKHIRSGVESR 126 LI ++ + W LA N+ S+ + + ++ + + I + + Sbjct: 9 LIEQFLDTI-WLEQDLAENTLASYRNDLQSLDRWLDAQQLHLENVQSIDLQSFLAERIDS 67 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ----QF 182 + +S+ + L++MR LF++ R++ +P + PK + +++ ++ Sbjct: 68 GYKAASSARLLSAMRRLFQYLYREKIRLDDPSAVIAAPKIPQRLPKDLSEKQVEDLLNAP 127 Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGF 241 + S + + E L GLR S+ + I+ K + L + Sbjct: 128 ATEDSLELRDKAMLEVLYACGLRVSELIGLTFSDISLRQGVIRVVGKGDKERLIPLGEEA 187 Query: 242 MKLLAM----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAHG 288 + + + F + KM F K A A ++ S H Sbjct: 188 IYWVEKYLEYGRPDLLNGKASDVLFPSKRGTKMTRQTFWHRIKYYAVLANIDGESLSPHV 247 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIR 330 +R AT + GA + G + + YT A +R+R Sbjct: 248 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLR 290 >gi|227833151|ref|YP_002834858.1| integrase/recombinase [Corynebacterium aurimucosum ATCC 700975] gi|262182358|ref|ZP_06041779.1| site-specific tyrosine recombinase XerD [Corynebacterium aurimucosum ATCC 700975] gi|227454167|gb|ACP32920.1| integrase/recombinase [Corynebacterium aurimucosum ATCC 700975] Length = 292 Score = 139 bits (351), Expect = 5e-31, Method: Composition-based stats. Identities = 54/268 (20%), Positives = 95/268 (35%), Gaps = 28/268 (10%) Query: 90 NSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT--PSSAIQFLTSMRVLFKWA 147 N R Y D + SG D R++T H+ + + + + SSA + L R L K+A Sbjct: 16 NYRRDINRYVDWLAE-SGITDLRRVTRAHVENYLVFLRESLAQSSASRALIVARGLHKFA 74 Query: 148 VRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF-------KSFWSEGSQPRLAFEFLL 200 + + + + V PKR + +D++ +S + R E L Sbjct: 75 LAEGMIEEDVAAEVSPPKRAQALPETLSVQDVEALLNAIPTDESATPIDIRDRALLEMLY 134 Query: 201 YSGLRCSDSCRAGVQHLQNNI------FSIKTQKTGTIITVEL--------PDGFMKLLA 246 +G R S+ V + + + K V L + ++ Sbjct: 135 GTGARISEVISLSVDDVTGEGPASVRDILVLSGKGDKQRLVPLGSHAVTAVENYLVRARP 194 Query: 247 MTPIGKET-FFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGAT 303 + G F+N + ++ K A +A + S H +R AT + GA Sbjct: 195 VLATGASHSLFLNTRGKALSRQSAWAAIKTAAQRAHLSTKISPHTLRHSFATHLLEGGAD 254 Query: 304 AHELMATYGWKTVDQAETYTK-GADRIR 330 + G +V + YT AD +R Sbjct: 255 VRTVQELLGHSSVTTTQIYTHVTADSLR 282 >gi|312883960|ref|ZP_07743677.1| site-specific tyrosine recombinase XerD [Vibrio caribbenthicus ATCC BAA-2122] gi|309368418|gb|EFP95953.1| site-specific tyrosine recombinase XerD [Vibrio caribbenthicus ATCC BAA-2122] Length = 302 Score = 139 bits (351), Expect = 5e-31, Method: Composition-based stats. Identities = 41/265 (15%), Positives = 97/265 (36%), Gaps = 23/265 (8%) Query: 85 GSLAVNSRISFE----SYFDQIIRKSGDFDYRKIT-TKHIRSGVESRKHTPSSAIQFLTS 139 L+ N+ S+ + + ++ I+ + +S + + +S + L++ Sbjct: 23 RGLSENTLSSYRNDLFKLLKWMFENNYRLNFISISGLQDFQSWLVDEGYKQTSRARMLSA 82 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK----SFWSEGSQPRLA 195 +R LF++ R+ + +P + PK + +++ + + + + Sbjct: 83 LRRLFQYMHRERLRSDDPSALLVSPKLPKRLPKDLSEQQVDALLSAPDANNPIELRDKAM 142 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLAMTPIGK-- 252 E L +GLR ++ ++++ ++ T K G V + + ++ + Sbjct: 143 LELLYATGLRVTELVSLTMENMSLRQGVVRVTGKGGKERLVPMGEDAIEWIETFLHQGRS 202 Query: 253 --------ETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAG 301 + F + ++M F K A AG++ S H +R AT + G Sbjct: 203 ELLGEKTSDVVFPSKRAKQMTRQTFWHRIKYYAMLAGIDSELLSPHVLRHAFATHLLNHG 262 Query: 302 ATAHELMATYGWKTVDQAETYTKGA 326 A + G + + YT A Sbjct: 263 ADLRVVQMLLGHSDLSTTQIYTHVA 287 >gi|254710057|ref|ZP_05171868.1| Phage integrase [Brucella pinnipedialis B2/94] gi|256031552|ref|ZP_05445166.1| Phage integrase [Brucella pinnipedialis M292/94/1] Length = 247 Score = 139 bits (351), Expect = 5e-31, Method: Composition-based stats. Identities = 45/244 (18%), Positives = 80/244 (32%), Gaps = 8/244 (3%) Query: 106 SGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVR-QEYVAINPCLSVERP 164 FD + IR P +A + + + +AV ++ NPC +++ Sbjct: 3 IAQFDLPQKIRPVIRKWRGEFADKPRTADYGMQVLSRVLSYAVDPLGKISQNPCEGIKQL 62 Query: 165 KRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224 + WT +D+ + K+ S + A + ++GLR D R H+ +N + Sbjct: 63 YKNDRAAIIWTDQDIARLKTKCSP--EVAWAVDLAAHTGLRAGDLLRLSWSHITDNAIIL 120 Query: 225 KTQKTG--TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282 T K+ + L LL P N K F F +A + Sbjct: 121 PTGKSRHTKEAVIPLYAELRALLQTIPRRSPIVLTNTRKAPWTVNGFGSSFSDCREEAKL 180 Query: 283 ---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339 + H R +AT AG + + GW+ + R ++I Sbjct: 181 GDRDLHFHDFRGTAATKFYIAGLSERVIAEIMGWEEETVRNIIRRYVSRTAAIEATIKQI 240 Query: 340 SSVV 343 Sbjct: 241 DEAR 244 >gi|294634844|ref|ZP_06713366.1| tyrosine recombinase XerD [Edwardsiella tarda ATCC 23685] gi|291091717|gb|EFE24278.1| tyrosine recombinase XerD [Edwardsiella tarda ATCC 23685] Length = 299 Score = 139 bits (351), Expect = 5e-31, Method: Composition-based stats. Identities = 50/285 (17%), Positives = 103/285 (36%), Gaps = 27/285 (9%) Query: 72 KWLISEYRKSAHW--GSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGVESR- 126 + LI ++ A W +LA N+ S+ + D + +++ R Sbjct: 6 QALIEQFL-DALWLEKNLAENTLASYRQDLRTLAEWLAYHDLSLLTASPGDLQNFFAQRV 64 Query: 127 --KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 + SS+ + L+++R +++ R+ +P + PK + ++ + Sbjct: 65 DGGYKASSSARLLSALRRCYQYLYRETLRTDDPSAQLAAPKLPQRLPKDLSEAQVDALLQ 124 Query: 185 FW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPD 239 + + E L +GLR S+ G + + ++ K V L + Sbjct: 125 APAIDNPLELRDKAMLELLYATGLRVSELVGLGQEDVSLRQGVVRVIGKGNKERLVPLGE 184 Query: 240 G-------FMKLLAMTPIGKET---FFINNDKQKMNATQFSIWFKAKATKAGVN---KSA 286 +++ + +T F +N ++M F K A AG++ S Sbjct: 185 EAIYWIEYYLEYGRPWLVNGQTVAALFPSNRARQMTRQTFWHRIKHYAVLAGIDTQRLSP 244 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIR 330 H +R AT + GA + G + + YT A +R+R Sbjct: 245 HVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLR 289 >gi|1303994|dbj|BAA12649.1| YqkM [Bacillus subtilis] Length = 296 Score = 139 bits (351), Expect = 5e-31, Method: Composition-based stats. Identities = 45/264 (17%), Positives = 98/264 (37%), Gaps = 24/264 (9%) Query: 85 GSLAVNSRISFESYFD----QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI---QFL 137 L+ N+ +S+E + D+ +T HI ++ K + S + L Sbjct: 16 RGLSQNTIVSYERDLKSYSLYLTETLHVTDWNHVTRIHIIQYLKHLKDSGKSGKTSARHL 75 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPR 193 S+R ++ +R++ +P + +E K + + ++++ G + + Sbjct: 76 ASIRSFHQFLLREKVTDKDPSVHIETQKTERALPKVLALNEVERLLDTPKLTSPFGYRDK 135 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLL---AMTP 249 E L +G+R S+ + ++ I+ K V + + + Sbjct: 136 AMLELLYATGIRVSEMIELKTADVHLSMGFIRCFGKGRKERIVPIGEAAASAIEEYMTKA 195 Query: 250 IGK-------ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300 GK + F+N+ ++++ F K A +AG+ K + H +R AT + Sbjct: 196 RGKLLKNNVSDALFLNHHGKQISRQGFWKNLKKIALEAGIKKELTPHTLRHSFATHLLED 255 Query: 301 GATAHELMATYGWKTVDQAETYTK 324 GA + G + + YT Sbjct: 256 GADLRAVQEMLGHADISTTQIYTH 279 >gi|310821627|ref|YP_003953985.1| Tyrosine recombinase XerD [Stigmatella aurantiaca DW4/3-1] gi|309394699|gb|ADO72158.1| Tyrosine recombinase XerD [Stigmatella aurantiaca DW4/3-1] Length = 310 Score = 139 bits (351), Expect = 5e-31, Method: Composition-based stats. Identities = 48/271 (17%), Positives = 103/271 (38%), Gaps = 26/271 (9%) Query: 85 GSLAVNSRISFES----YFDQIIRKSGDFDYRKITTKHIRS---GVESRKHTPSSAIQFL 137 L+ + ++ + YF+ + + G D ++ + + + + +R + S + L Sbjct: 16 RGLSGKTVDAYAADLTVYFEDLRAR-GVLDVARVKQEDVTAHLMQLGARGLSKRSQARHL 74 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS----FWSEGSQPR 193 ++R ++ + +++ +P ++ P+ + T E+++Q + G + + Sbjct: 75 AAVRGFHRFLIAEKHAEKDPTEDLDTPRSARKLPSFLTLEEVEQLLAAPDERHPTGMRDK 134 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-IITVELPDGFMKLLAM----- 247 E L +GLR S+ C G+ +Q + + G+ V + ++ + Sbjct: 135 AMLELLYATGLRVSELCSLGINDVQLGAGYLVAKGKGSKERVVPVGSVAVEKVQAYLGGP 194 Query: 248 -----TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300 + FI F K A KAG+ K S H +R AT + Sbjct: 195 RQHLLGKRQSRSLFITPRGGAFTRQGFWKLLKRYALKAGIRKPISPHKLRHSFATHLVER 254 Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRL 331 GA + A G + + YT + RL Sbjct: 255 GADLRAVQAMLGHADLATTQIYTH-VNSARL 284 >gi|171463113|ref|YP_001797226.1| tyrosine recombinase XerD [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171192651|gb|ACB43612.1| tyrosine recombinase XerD [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 307 Score = 139 bits (351), Expect = 5e-31, Method: Composition-based stats. Identities = 51/269 (18%), Positives = 87/269 (32%), Gaps = 24/269 (8%) Query: 86 SLAVNSRISFESYF----DQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMR 141 LA NS ++ + + SG Y R ++A + LT + Sbjct: 28 GLAQNSLAAYRRDLLLLAQWLYKDSGGDLYGVTEKDLTAYIAYRRADKATTANRRLTVFK 87 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRLAFE 197 ++ A+R V +PC+ + K+ + +++ + + G + R E Sbjct: 88 RFYRHALRMNLVKSDPCMGLRAAKQALRFPKTLSEDQVTALLNAPDIETSLGLRDRTMLE 147 Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKT--QKTGTIITVELPDGFMKLLAMTPIGKETF 255 + SGLR S+ L N ++ K G V + L T Sbjct: 148 LMYASGLRVSEIVSLKTAALGLNEGVVRVVNGKGGKERLVPFGGEAGQWLRRYLAEARTP 207 Query: 256 FI-----------NNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGA 302 + + + F K AT A + S H +R AT + GA Sbjct: 208 LLEGKTSDAVFVGRHTGTGLTRQAFWALIKRYATVANISVALSPHTLRHAFATHLLNHGA 267 Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRL 331 + G + + YT A R RL Sbjct: 268 DLRVVQLLLGHADISTTQIYTHVA-RERL 295 >gi|313887306|ref|ZP_07820997.1| phage integrase, N-terminal SAM domain protein [Porphyromonas asaccharolytica PR426713P-I] gi|312923225|gb|EFR34043.1| phage integrase, N-terminal SAM domain protein [Porphyromonas asaccharolytica PR426713P-I] gi|332176305|gb|AEE11995.1| Tyrosine recombinase xerC [Porphyromonas asaccharolytica DSM 20707] Length = 314 Score = 139 bits (351), Expect = 6e-31, Method: Composition-based stats. Identities = 52/283 (18%), Positives = 99/283 (34%), Gaps = 24/283 (8%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKH---IRSGVES 125 + LI Y+ L+ NS S+ D++ D R++ +H + + Sbjct: 7 QQLILRYKTYLRLEQHLSDNSIDSYLYDVDKLYTYIEDMGLSLREVELQHLNNFAAHLLD 66 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + S + L+ ++ F++ +E + +P ++ P + T ++ Sbjct: 67 LGISMRSLARVLSGVKSFFRFLTLEEEIERDPTDMLQTPPIHKKLPEVLTLAEIDSLLGA 126 Query: 186 WSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG 240 E S+ E L GLR S+ C + + + K V + Sbjct: 127 IDEDRIEASRDTAIIEVLYSCGLRVSELCGLTYSDVFLDEGYLHVWGKGRKERLVPMSPK 186 Query: 241 FMKLLA----------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHG 288 + + P + FI+ Q ++ + A +AG+ K S H Sbjct: 187 AVADVQRYLNDPYRYNAKPEYDQYLFISRRGQPISRITVFCLIRTLAEQAGIQKEISPHT 246 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 +R AT + GA H + G +++ E YT DR L Sbjct: 247 LRHSFATHLLEGGADLHAIQLMMGHESIATTEVYTH-VDRSAL 288 >gi|260588143|ref|ZP_05854056.1| integrase/recombinase XerD [Blautia hansenii DSM 20583] gi|260541670|gb|EEX22239.1| integrase/recombinase XerD [Blautia hansenii DSM 20583] Length = 294 Score = 139 bits (350), Expect = 6e-31, Method: Composition-based stats. Identities = 43/257 (16%), Positives = 102/257 (39%), Gaps = 22/257 (8%) Query: 88 AVNSRISFESYF---DQIIRKSGDFDYRKITTK---HIRSGVESRKHTPSSAIQFLTSMR 141 + N+ +S+E +Q +++ G ++ +++ +E + SS + + S+R Sbjct: 19 SRNTEVSYERDLKKLEQFLKQEGILEWHQVSAVLLNSYIMYLERKNFAASSISRSVASIR 78 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ----QFKSFWSEGSQPRLAFE 197 F++ ++E NP ++ PK + + T +++ Q K ++G + R E Sbjct: 79 AFFQYLCQRECWRENPAEGLKAPKIEKKAPGILTVDEVDLLLSQPKENTAKGVRDRAMLE 138 Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP-------DGFMKLLAMTPI 250 L +G+R S+ ++ + + + ++ + + +M + + Sbjct: 139 LLYATGIRVSELIHLTLRDVNLKLGYLTCSQSERERVIPFGATAKTAVEAYMAWARVELL 198 Query: 251 GKET---FFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAH 305 G+ + F+N + M+ F K A AG+ + + H +R A GA Sbjct: 199 GENSSEWLFVNCSGKSMSRQGFWKILKGYAVSAGIQQDITPHTLRHSFAAHLVQNGADLK 258 Query: 306 ELMATYGWKTVDQAETY 322 + G + + Y Sbjct: 259 SVQEMMGHSDISTTQIY 275 >gi|126640334|ref|YP_001083318.1| site-specific tyrosine recombinase [Acinetobacter baumannii ATCC 17978] Length = 250 Score = 139 bits (350), Expect = 6e-31, Method: Composition-based stats. Identities = 43/236 (18%), Positives = 79/236 (33%), Gaps = 16/236 (6%) Query: 110 DYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169 D+ + + +P S + L+++R +K+ Q+ + NP + PK Sbjct: 3 DWTSDDISDVLIELTKVGKSPRSIARCLSALRQFYKFLREQKLRSDNPVATHHSPKIGRA 62 Query: 170 GIRPWTKEDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK 225 + ++ED++ G + R FE L GLR S+ ++ + ++ Sbjct: 63 LPKDLSEEDVEALIQAPDITTALGLRDRAMFEVLYACGLRVSELLNLRLELINLKQGYLR 122 Query: 226 -TQKTGTIITVELPDGFMKLLAMT---------PIGKETFFINNDKQKMNATQFSIWFKA 275 T K V L + + F+ M+ F K Sbjct: 123 ITGKGNKERLVPLGQYACDWVERYLNEARPQLYKSSTDYLFLTQHGGIMSRQNFWYAIKH 182 Query: 276 KATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 A +A + S H +R AT + GA + G + + YT A Sbjct: 183 YALQANIQAELSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQVR 238 >gi|206561110|ref|YP_002231875.1| site-specific tyrosine recombinase XerD [Burkholderia cenocepacia J2315] gi|198037152|emb|CAR53073.1| putative integrase/recombinase [Burkholderia cenocepacia J2315] Length = 316 Score = 139 bits (350), Expect = 6e-31, Method: Composition-based stats. Identities = 48/268 (17%), Positives = 89/268 (33%), Gaps = 22/268 (8%) Query: 85 GSLAVNSRISFES---YFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSSAIQFLTSM 140 LA N+ ++ F Q + + + + +R +S+ + L+ Sbjct: 39 HGLARNTLDAYRRDLVLFSQWLAATHAAPLDGADEAMVTGYIAARSDGKATSSNRRLSVF 98 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLAF 196 R + WAVR+ + +P L + K+ ++ ++ G+ + R Sbjct: 99 RRYYGWAVREHRASADPTLRITSAKQAARFPSTLSEAQVEALLGAPDIGTPLGLRDRTML 158 Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------ELPDGFMKLLAM 247 E + SGLR S+ + N ++ G+ + + Sbjct: 159 ELMYASGLRVSELVTLKTVEVGLNEGVVRVMGKGSKERLVPFGEVAHGWIERYLRDARPA 218 Query: 248 T--PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGAT 303 + F+ M QF K A +A V + S H +R AT + GA Sbjct: 219 LLGARAADALFVTARGDGMTRQQFWNIIKRHAQQADVRAHLSPHTLRHAFATHLLNHGAD 278 Query: 304 AHELMATYGWKTVDQAETYTKGADRIRL 331 + G + + YT A R RL Sbjct: 279 LRVVQLLLGHSDISTTQIYTHVA-RERL 305 >gi|218131523|ref|ZP_03460327.1| hypothetical protein BACEGG_03142 [Bacteroides eggerthii DSM 20697] gi|217986455|gb|EEC52792.1| hypothetical protein BACEGG_03142 [Bacteroides eggerthii DSM 20697] Length = 316 Score = 139 bits (350), Expect = 6e-31, Method: Composition-based stats. Identities = 52/274 (18%), Positives = 99/274 (36%), Gaps = 23/274 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQII-----RKSGDFDYRKITTKHIRSGVESRK 127 +I +Y++ SLA N+ ++ + +++ + + +G+ Sbjct: 16 IIRKYQQYLKLEKSLASNTFDAYMTDLQKLLHFLEGENIEVGNVTPDDLQRFAAGLHDIG 75 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 P S + L+ ++ F + +Y+ +P +E PK + T E++ + S Sbjct: 76 IHPRSQARILSGIKSFFHFLTVADYLETDPSELLEGPKIGFKIPEVLTVEEIDRIISAVD 135 Query: 188 ----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT-VELPDGFM 242 EG + R E L GLR S+ C + L IK + G+ V + + Sbjct: 136 MDKKEGQRNRAILETLYSCGLRVSELCNLKLSDLYFEEGFIKVEGKGSKQRLVPISPRAI 195 Query: 243 KLLAMTPIGK----------ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290 K + + + F+ ++ K A K G+ K S H R Sbjct: 196 KEIKYWLTDRNLGKIKKGYEDYVFLARWGNNISRIMVFHMIKELAEKTGITKNISPHTFR 255 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK 324 AT + GA + G +++ E YT Sbjct: 256 HSFATHLLEGGANLRAIQCMLGHESIATTEIYTH 289 >gi|262043692|ref|ZP_06016801.1| phage integrase family site-specific recombinase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259039030|gb|EEW40192.1| phage integrase family site-specific recombinase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 302 Score = 139 bits (350), Expect = 6e-31, Method: Composition-based stats. Identities = 49/298 (16%), Positives = 97/298 (32%), Gaps = 30/298 (10%) Query: 41 STFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD 100 S Y + + T T L + KSA++ L ++ + + Sbjct: 4 SQLWARYEALIDEQTNV-----------MTFSKLWGLFLKSAYYLELKPRTQKDYLQHQK 52 Query: 101 QIIRKSGDFDYRKITTKHIRSGVESRK-HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCL 159 +++ G KI T+ IR ++ R + + A ++SM +F+W + V NPC Sbjct: 53 KLLAVFGKITADKIKTEDIRMFMDRRGLQSKTQANHEMSSMSRVFRWGFERGMVKGNPCQ 112 Query: 160 SVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN 219 V + K G R T + + + R A E R +D + + Sbjct: 113 GVSKFKAVARG-RYITDAEYEAIYKEADD--VVRTAMEIAYLCAARLADVLGMQWRQVTP 169 Query: 220 NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET------FFINNDKQKMNATQFSIWF 273 I+ K + D + + + + + + FS + Sbjct: 170 EGIFIQQGKNNVSQIKQWTDRLKQAFELAKTFSNSGNPGAFVLMGSHGSGFSKRGFSHRW 229 Query: 274 KAKATKAG------VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 + KA ++ + H + K + ++ + G KT Q Y + Sbjct: 230 EEARHKASVKLGYVLDCTFHDL-KAKGISDYE--GSSRDKQLFSGHKTESQVLIYDRK 284 >gi|298208960|ref|YP_003717139.1| putative tyrosine recombinase [Croceibacter atlanticus HTCC2559] gi|83848887|gb|EAP86756.1| putative tyrosine recombinase [Croceibacter atlanticus HTCC2559] Length = 298 Score = 139 bits (350), Expect = 6e-31, Method: Composition-based stats. Identities = 46/265 (17%), Positives = 95/265 (35%), Gaps = 30/265 (11%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYR--------KITTKHIRSGVESRKHTPSSAIQF 136 L++NS S+ +++++ D + IT + + S + Sbjct: 18 RGLSLNSIKSYSYDVEKLMKFLEKNDLKTSPLKIDANITKAFVYDVAKHMNE--RSQARL 75 Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQP 192 ++ ++ F + V ++Y NP +E P+ + + E++ + EG + Sbjct: 76 ISGLKSFFNYLVFEDYRETNPVDLIESPRIGRKLPDTLSLEEIDNLIAHIDLSKPEGERN 135 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQH--LQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPI 250 R + L GLR S+ + + + T K V + + KL+++ Sbjct: 136 RAMIDTLYSCGLRVSELITLNLSDLFFEEGFIKV-TGKGNKQRFVPIAEHTQKLISIYKT 194 Query: 251 G-----------KETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS 297 ++T F+N + + K + K G+ K S H R AT Sbjct: 195 EIRNHQDIKKGHEDTLFLNRRGRGLTRAMIFTIVKNLSEKCGLQKTISPHTFRHSFATHL 254 Query: 298 ADAGATAHELMATYGWKTVDQAETY 322 + GA + G +++ E Y Sbjct: 255 LENGADLRAIQQMLGHESITTTEIY 279 >gi|297537324|ref|YP_003673093.1| integrase family protein [Methylotenera sp. 301] gi|297256671|gb|ADI28516.1| integrase family protein [Methylotenera sp. 301] Length = 333 Score = 139 bits (350), Expect = 6e-31, Method: Composition-based stats. Identities = 68/340 (20%), Positives = 120/340 (35%), Gaps = 26/340 (7%) Query: 2 TPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYI 61 T +L LPP + +HG YYF + IRL + A + L G P Sbjct: 6 TNNLDLPPHMQ---IKHG--AYYFVGRDKKWIRLSE--DKALALAKWAELEGEIPFPPNE 58 Query: 62 NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121 P K +L LI Y A ++ + + + + R + HI Sbjct: 59 EKPIK--GSLGELIMRYMIEIA-PHKAKSTYQGNKLEAENLKKVFSKVQARAVLPTHIAK 115 Query: 122 GVESRKHT-PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 +++R T A + + + ++ + +R V NPC+ V + K K R + + Sbjct: 116 YLDTRGITSQVRANREIALLSHIYTYGMRWGVVNSNPCIGVAKHKEKGR-DRYIMDNEFE 174 Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240 K+ SE + + + LR D ++ + + IK KTG E G Sbjct: 175 GVKNIASE--LIAIVMDMAYITALRKGDILSLKLEQVTDEGIWIKQNKTGAKQLYEWSIG 232 Query: 241 FMKLLAMT-----PIGKETFFINNDKQKMNATQFSIWF----KAKATKAGVNKSAHGVRK 291 ++ PI F + + + F + A + G + H +R Sbjct: 233 LHDVVDRAKALKRPIRGLYLFCTRQGKPYSDSGFKAMWNRVQVKWAEQGGSRFTFHDIRA 292 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 + T + + G A + G + E Y K + R+ Sbjct: 293 KALTDAKNLGMDA---QSLAGHSSAAMTEHYIKQREFKRV 329 >gi|317153262|ref|YP_004121310.1| tyrosine recombinase XerD [Desulfovibrio aespoeensis Aspo-2] gi|316943513|gb|ADU62564.1| tyrosine recombinase XerD [Desulfovibrio aespoeensis Aspo-2] Length = 307 Score = 139 bits (350), Expect = 6e-31, Method: Composition-based stats. Identities = 54/267 (20%), Positives = 96/267 (35%), Gaps = 21/267 (7%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYR--KITTKH---IRSGVESRKHTPSSAIQFLTS 139 L+ NS + + ++ + +R +T + + + +R S + L+S Sbjct: 29 KGLSENSLSGYSADLASLLAFLEEKSFRLEDLTERTLFLYLTYLRARGLQSRSLARHLSS 88 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195 +R F +A+ Q + +P +E PK + T+E+M + + G + + Sbjct: 89 LRGFFAFALDQRWYKEDPGHLLENPKLPKKLPEFLTREEMSRVLALPETATKLGMRDQAM 148 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMK-----LLAMTP 249 E L +GLR S+ V ++ K V + LL P Sbjct: 149 LELLYAAGLRVSELIEMKVLDYDAQTGLLRVFGKGAKERLVPIHYVAQDVLSRYLLNTRP 208 Query: 250 IGKETF---FINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATA 304 + F+N + + K A KAG+ +S H R AT + GA Sbjct: 209 AFRPAVDFMFLNRSGKGLTRQGVWKLIKTYADKAGIKRSISPHTFRHSFATHLLEGGADL 268 Query: 305 HELMATYGWKTVDQAETYTK-GADRIR 330 + G + E YT A R+R Sbjct: 269 RTVQMLLGHSDISATEIYTHIQAGRLR 295 >gi|242240703|ref|YP_002988884.1| tyrosine recombinase XerD [Dickeya dadantii Ech703] gi|242132760|gb|ACS87062.1| tyrosine recombinase XerD [Dickeya dadantii Ech703] Length = 299 Score = 139 bits (350), Expect = 6e-31, Method: Composition-based stats. Identities = 44/265 (16%), Positives = 92/265 (34%), Gaps = 23/265 (8%) Query: 85 GSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFLTS 139 +LA N+ S+ + ++S + R + +S+ + L++ Sbjct: 20 RNLAENTLQSYRRDLRTLAAWLAHHHASLSDARPDDLQSFLAERVDGGYKATSSARLLSA 79 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195 MR LF++ R++ +P + PK + T+ ++ + + + Sbjct: 80 MRRLFQYLYREKVRPDDPSAVLSSPKLPQRLPKDLTEAQVESLLAAPATDQPLELRDKAM 139 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG-------FMKLLAM 247 E L +GLR S+ + + ++ K V L + +++ Sbjct: 140 LEVLYATGLRVSELVGLTMSDVSLRQGVVRVIGKGNKERLVPLGEEAVYWVEQYLEYGRP 199 Query: 248 TPIGKETF---FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAG 301 + +T F + ++M F K A A ++ S H +R AT + G Sbjct: 200 WLLDGQTLDVMFPSTRGRQMTRQTFWHRIKHYAVLASIDSARLSPHVLRHAFATHLLNHG 259 Query: 302 ATAHELMATYGWKTVDQAETYTKGA 326 A + G + + YT A Sbjct: 260 ADLRVVQMLLGHSDLSTTQIYTHVA 284 >gi|291618684|ref|YP_003521426.1| XerD [Pantoea ananatis LMG 20103] gi|291153714|gb|ADD78298.1| XerD [Pantoea ananatis LMG 20103] Length = 297 Score = 139 bits (350), Expect = 7e-31, Method: Composition-based stats. Identities = 51/271 (18%), Positives = 100/271 (36%), Gaps = 24/271 (8%) Query: 85 GSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFLTS 139 +LA N+ S+ + ++ ++ + R + SS+ + L++ Sbjct: 18 RNLAQNTLSSYRQDLQTLTGWLAHHGLTLTTLSAPDLQQFLAERLEGGYKASSSARLLSA 77 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRLA 195 MR LF++ R++ +P + PK + ++ + + + + Sbjct: 78 MRRLFQYLYREKMRTDDPSAMLAAPKLPQRLPKDLSEAQVDRLLQAPDVNVPLELRDKAM 137 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVEL-------PDGFMKLLAM 247 E L +GLR S+ + + ++ K V L + +M+ Sbjct: 138 LELLYATGLRVSELVGLTLNDVSLRQGVVRVIGKGNKERLVPLGEEAVHWLEYYMEHGRP 197 Query: 248 TPIGKET---FFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAG 301 + +T FF +N Q+M F K A AG++ S H +R AT + G Sbjct: 198 WLLNGQTLDVFFPSNRAQQMTRQTFWHRIKHYAMLAGIDSEKLSPHVLRHAFATHLLNHG 257 Query: 302 ATAHELMATYGWKTVDQAETYTKGA-DRIRL 331 A + G + + YT A +R+RL Sbjct: 258 ADLRVVQMLLGHSDLSTTQIYTHVATERLRL 288 >gi|254251586|ref|ZP_04944904.1| Site-specific recombinase XerD [Burkholderia dolosa AUO158] gi|124894195|gb|EAY68075.1| Site-specific recombinase XerD [Burkholderia dolosa AUO158] Length = 316 Score = 139 bits (350), Expect = 7e-31, Method: Composition-based stats. Identities = 49/268 (18%), Positives = 88/268 (32%), Gaps = 22/268 (8%) Query: 85 GSLAVNSRISFES---YFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSSAIQFLTSM 140 LA N+ ++ F Q + + D + + +R +S+ + L+ Sbjct: 39 HGLARNTLDAYRRDLMLFSQWLAATHDAPLDAADEAMVTGYIAARSDGKATSSNRRLSVF 98 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAF 196 R + WAVR+ + +P L + K+ ++ ++ G + R Sbjct: 99 RRYYGWAVREHRASADPTLRITSAKQAARFPSTLSEAQVEALLGAPDIDTPLGLRDRTML 158 Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------ELPDGFMKLLAM 247 E + SGLR S+ + N ++ G+ + + Sbjct: 159 ELMYASGLRVSELVTLKTVEVGLNEGVVRVMGKGSKERLVPFGEVAHGWIERYLRDARPA 218 Query: 248 T--PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGAT 303 + F+ M QF K A A V + S H +R AT + GA Sbjct: 219 LLGARAADALFVTARGDGMTRQQFWNIIKRHARHADVRAHLSPHTLRHAFATHLLNHGAD 278 Query: 304 AHELMATYGWKTVDQAETYTKGADRIRL 331 + G + + YT A R RL Sbjct: 279 LRVVQLLLGHSDISTTQIYTHVA-RERL 305 >gi|218701603|ref|YP_002409232.1| site-specific tyrosine recombinase XerD [Escherichia coli IAI39] gi|254037938|ref|ZP_04871996.1| site-specific tyrosine recombinase [Escherichia sp. 1_1_43] gi|218371589|emb|CAR19428.1| site-specific tyrosine recombinase [Escherichia coli IAI39] gi|226839562|gb|EEH71583.1| site-specific tyrosine recombinase [Escherichia sp. 1_1_43] Length = 298 Score = 139 bits (350), Expect = 7e-31, Method: Composition-based stats. Identities = 44/270 (16%), Positives = 98/270 (36%), Gaps = 24/270 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESR---KHTPSSAIQFLTS 139 +LA N+ ++ ++ + + +++ + R + +S+ + L++ Sbjct: 19 KNLAENTLNAYRRDLSMMVEWLHHRGLTLATVQSDDLQALLAERLEGGYKATSSARLLSA 78 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195 +R LF++ R+++ +P + PK + ++ +++ + + Sbjct: 79 VRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLIDQPLELRDKAM 138 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGKET 254 E L +GLR S+ + + ++ K V L + + L Sbjct: 139 LEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVYWLETYLEHGRP 198 Query: 255 FFIN----------NDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAG 301 + +N Q+M F K A AG++ S H +R AT + G Sbjct: 199 WLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHAFATHLLNHG 258 Query: 302 ATAHELMATYGWKTVDQAETYTKGA-DRIR 330 A + G + + YT A +R+R Sbjct: 259 ADLRVVQMLLGHSDLSTTQIYTHVATERLR 288 >gi|238855202|ref|ZP_04645521.1| tyrosine recombinase XerD [Lactobacillus jensenii 269-3] gi|260664565|ref|ZP_05865417.1| tyrosine recombinase XerD [Lactobacillus jensenii SJ-7A-US] gi|282932504|ref|ZP_06337929.1| tyrosine recombinase XerD [Lactobacillus jensenii 208-1] gi|313471969|ref|ZP_07812461.1| tyrosine recombinase XerD [Lactobacillus jensenii 1153] gi|238832094|gb|EEQ24412.1| tyrosine recombinase XerD [Lactobacillus jensenii 269-3] gi|260561630|gb|EEX27602.1| tyrosine recombinase XerD [Lactobacillus jensenii SJ-7A-US] gi|281303453|gb|EFA95630.1| tyrosine recombinase XerD [Lactobacillus jensenii 208-1] gi|313449040|gb|EFR61308.1| tyrosine recombinase XerD [Lactobacillus jensenii 1153] Length = 300 Score = 139 bits (350), Expect = 7e-31, Method: Composition-based stats. Identities = 42/263 (15%), Positives = 99/263 (37%), Gaps = 24/263 (9%) Query: 85 GSLAVNSRISFESYFDQIIR-----KSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139 L+ N+ S++ +Q + K D+ + + S+ + +T+ Sbjct: 20 RGLSKNTVNSYQLDLNQFVEYLDKEKISDWPEDPLVIDSYLAKQRDEGKKTSTISRGITT 79 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195 +R +++ +RQ + ++P + ++ PK++ +++++ + + + G + R Sbjct: 80 LRRFYRYLLRQHILVVDPLIQIDTPKQEKRLPLALSQKEVSELLAQPNLNTATGLRDRAI 139 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFM------------ 242 E L +G+R S+ L ++ I+ K V + D + Sbjct: 140 LELLYATGMRVSELINLKETDLHTDLKIIRVLGKGSKERLVPVTDFALNWVDKYLKEVRD 199 Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300 L + + F+NN ++ K + A ++K + H +R AT + Sbjct: 200 PALLKKGVACDFLFLNNRAGQLTRQAVWQSIKKYSKLARIDKDITPHTLRHTFATHLLEN 259 Query: 301 GATAHELMATYGWKTVDQAETYT 323 GA + G + + YT Sbjct: 260 GADLRVVQEILGHSDISTTQIYT 282 >gi|290476402|ref|YP_003469307.1| site-specific tyrosine recombinase [Xenorhabdus bovienii SS-2004] gi|289175740|emb|CBJ82543.1| site-specific tyrosine recombinase [Xenorhabdus bovienii SS-2004] Length = 318 Score = 139 bits (349), Expect = 7e-31, Method: Composition-based stats. Identities = 52/307 (16%), Positives = 108/307 (35%), Gaps = 30/307 (9%) Query: 51 LTGSTPKREYINSPRKKPTTLKWLISEYRKSAHW--GSLAVNSRISFE---SYFDQIIRK 105 L+ + ++ + P + LI ++ + W LA N+ S+ + + Sbjct: 7 LSENYASQDKSSEPAPPANS---LIEQFLDTI-WLEKDLAENTLSSYRLDLQALNNWLVY 62 Query: 106 SGD--FDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER 163 SG I + + + SS+ + L++MR LF++ R++ +P + Sbjct: 63 SGHDLLSVESIELQLFLAERVDSGYKASSSARLLSAMRRLFQYLYREKMRLDDPTALLSA 122 Query: 164 PKRKTEGIRPWTKEDM----QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN 219 PK + +++ + + + + E L GLR S+ + + Sbjct: 123 PKLPKRLPKDLSEKQVGDLLNTPLTDQPIELRDKAMLEVLYACGLRVSELVGLTLSDMSL 182 Query: 220 NIFSIKTQKTG-TIITVELPDGFMKLLAMT----------PIGKETFFINNDKQKMNATQ 268 ++ G V L + + L + FF + +M Sbjct: 183 RQGVVRVVGKGNKERLVPLGEEALYWLEKYLEYGRPWLLNGSASDVFFPSKRGTQMTRQT 242 Query: 269 FSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 F K A +G++ S H +R AT + GA + G + + YT Sbjct: 243 FWHRIKHYAVLSGIDTERLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTYV 302 Query: 326 A-DRIRL 331 A +R+++ Sbjct: 303 ATERLKM 309 >gi|134296744|ref|YP_001120479.1| site-specific tyrosine recombinase XerD [Burkholderia vietnamiensis G4] gi|134139901|gb|ABO55644.1| tyrosine recombinase XerD [Burkholderia vietnamiensis G4] Length = 320 Score = 139 bits (349), Expect = 8e-31, Method: Composition-based stats. Identities = 45/268 (16%), Positives = 89/268 (33%), Gaps = 22/268 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH---IRSGVESRKH-TPSSAIQFLTSM 140 L+ N+ ++ + + + + + + +R +S+ + L+ Sbjct: 43 HGLSRNTLDAYRRDLMLFSQWLAATHHAALDSADEAMVTGYIAARSDGKATSSNRRLSVF 102 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLAF 196 R + WAVR+ + +P L + K+ ++ ++ G+ + R Sbjct: 103 RRYYGWAVREHRASADPTLRIASAKQGARFPSTLSEAQVEALLGAPDIGTPLGLRDRTML 162 Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------ELPDGFMKLLAM 247 E + SGLR S+ + N ++ G+ + + Sbjct: 163 ELMYASGLRVSELVTLKTVEVGLNEGVVRVMGKGSKERLVPFGEVAHGWIERYLRDARPA 222 Query: 248 T--PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGAT 303 + F+ M QF K A +A V + S H +R AT + GA Sbjct: 223 LLGARAADALFVTARGDGMTRQQFWNIIKRHAQRADVRAHLSPHTLRHAFATHLLNHGAD 282 Query: 304 AHELMATYGWKTVDQAETYTKGADRIRL 331 + G + + YT A R RL Sbjct: 283 LRVVQLLLGHSDISTTQIYTHVA-RERL 309 >gi|78043995|ref|YP_360612.1| tyrosine recombinase XerC [Carboxydothermus hydrogenoformans Z-2901] gi|77996110|gb|ABB15009.1| tyrosine recombinase XerC [Carboxydothermus hydrogenoformans Z-2901] Length = 297 Score = 139 bits (349), Expect = 8e-31, Method: Composition-based stats. Identities = 42/258 (16%), Positives = 86/258 (33%), Gaps = 18/258 (6%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG---VESRKHTPSSAIQFLTSMR 141 + + N+ ++E + + ++ + + + +A + + ++R Sbjct: 16 RNYSPNTIAAYERDILDFQEFLQGKSFLSVNEVDLKQFLVDILRKNRSRRTAARKMVALR 75 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQFKSFWSEGSQPRLAFE 197 +++ R ++ NP LS+E PK T ++ ++ ++ G + R E Sbjct: 76 SFYRFLKRCGFIKENPALSLEIPKIPKTLPEVLTVDEVFKVIEGQENSTPTGLRNRALLE 135 Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-EL----PDGFMKLLAMT---- 248 +GLR + + L ++ G + L D L Sbjct: 136 LFYGAGLRIGEIAGLTLNDLDLTQGYVRVTGKGRRQRIVPLGKYALDSLKLYLEAGRPAF 195 Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHE 306 E F+N + KAG+N+ + H R AT + GA Sbjct: 196 KPKSEKLFLNQQGAGLTVRGIRYLISQIVKKAGLNRKITPHTFRHSYATHLLEGGADIRA 255 Query: 307 LMATYGWKTVDQAETYTK 324 + G K + E YT Sbjct: 256 VQELLGHKRLSTTEIYTH 273 >gi|253687046|ref|YP_003016236.1| tyrosine recombinase XerD [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251753624|gb|ACT11700.1| tyrosine recombinase XerD [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 299 Score = 139 bits (349), Expect = 8e-31, Method: Composition-based stats. Identities = 45/280 (16%), Positives = 96/280 (34%), Gaps = 26/280 (9%) Query: 72 KWLISEYRKSAHW--GSLAVNSRISFESYFDQIIRKSGDFD-----YRKITTKHIRSGVE 124 + LI ++ A W +LA N+ S+ + D + + + + Sbjct: 6 QALIEQFL-DALWLERNLAENTLASYRLDLRTLAEWLAHHDNDLLQAQALDLQAFLADRV 64 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 + +S+ + L++MR F++ R++ + +P + PK + ++ + + Sbjct: 65 DGGYKATSSARLLSAMRRFFQYLYREKLRSDDPSAVLSSPKLPQRLPKDLSEAQVDALLN 124 Query: 185 F----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPD 239 + + E L +GLR S+ + + ++ K V L + Sbjct: 125 APSIEQPLELRDKAMLEVLYATGLRVSELVGLTMSDVSLRQGVVRVLGKGNKERLVPLGE 184 Query: 240 GFMKLLAMTPIGKETFFIN----------NDKQKMNATQFSIWFKAKATKAGVN---KSA 286 + + + +N N ++M F K A A ++ S Sbjct: 185 EAVYWIEYYLEHGRPWLLNGQTLDVLFPSNRARQMTRQTFWHRIKYYAVLASIDSEKLSP 244 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 H +R AT + GA + G + + YT A Sbjct: 245 HVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA 284 >gi|157829635|pdb|1A0P|A Chain A, Site-Specific Recombinase, Xerd Length = 290 Score = 139 bits (349), Expect = 8e-31, Method: Composition-based stats. Identities = 43/270 (15%), Positives = 95/270 (35%), Gaps = 24/270 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDY-----RKITTKHIRSGVESRKHTPSSAIQFLTS 139 +LA N+ ++ ++ + + + + + +S+ + L++ Sbjct: 17 KNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGYKATSSARLLSA 76 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195 +R LF++ R+++ +P + PK + ++ +++ + + Sbjct: 77 VRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLIDQPLELRDKAM 136 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGKET 254 E L +GLR S+ + + ++ K V L + + L Sbjct: 137 LEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVYWLETYLEHGRP 196 Query: 255 FFIN----------NDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAG 301 + +N Q+M F K A AG++ S H +R AT + G Sbjct: 197 WLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHAFATHLLNHG 256 Query: 302 ATAHELMATYGWKTVDQAETYTKGA-DRIR 330 A + G + + YT A +R+R Sbjct: 257 ADLRVVQMLLGHSDLSTTQIYTHVATERLR 286 >gi|284799628|ref|ZP_05984435.2| tyrosine recombinase XerD [Neisseria subflava NJ9703] gi|284797559|gb|EFC52906.1| tyrosine recombinase XerD [Neisseria subflava NJ9703] Length = 292 Score = 139 bits (349), Expect = 8e-31, Method: Composition-based stats. Identities = 45/277 (16%), Positives = 100/277 (36%), Gaps = 19/277 (6%) Query: 70 TLKWLISEYRKSAHWGS-LAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESR 126 ++ LI + +S L+ N+ S+ ++ + G D+ + V + Sbjct: 2 SMDDLIDKLLESLWLQDRLSYNTLQSYRRDLVKVAARLTEGGQDWLSADEFALSDAVYAE 61 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 +S + L++ + ++ W A NP ++ PK + + T+ + + Sbjct: 62 GEKNTSQARALSACKRMYGWLEETGQRADNPTRFLKAPKSERKLPTLITEAQIDALLAEP 121 Query: 187 S----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT-VELPDGF 241 G + + E + +GLR +++ + + + + SI+T G + V L Sbjct: 122 DVETLHGLRDKALLEVMYATGLRVTEAVKLTLSDIDLHRGSIRTIGKGDKLRLVPLGQEA 181 Query: 242 MKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVR 290 + F++ + ++ + K A AG+ S HG+R Sbjct: 182 AYWVERYCNESRPLLLKNKICDEVFVSQKRSGISRQLAWMIVKEYAEAAGIASLSPHGLR 241 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 AT + G + G ++ + YT A+ Sbjct: 242 HAFATHLVNHGVDLRSVQMMLGHSDINTTQIYTHVAN 278 >gi|240949807|ref|ZP_04754136.1| site-specific tyrosine recombinase XerD [Actinobacillus minor NM305] gi|240295724|gb|EER46419.1| site-specific tyrosine recombinase XerD [Actinobacillus minor NM305] Length = 297 Score = 139 bits (349), Expect = 8e-31, Method: Composition-based stats. Identities = 47/286 (16%), Positives = 95/286 (33%), Gaps = 26/286 (9%) Query: 70 TLKWLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH-----IRSGV 123 +L ++ ++ + L+ N+ S+ D +T H Sbjct: 3 SLDPIVEQFLDTLWQEHGLSDNTVSSYRLDLSLFTEWL-DEPRAFLTVDHHTLQEFLGYR 61 Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 + + SS+++ L+ +R F++ + Y +P + P++ + + +E + Sbjct: 62 FDQGYKASSSLRMLSCLRKFFRFLYLENYRKDDPTAMLISPRKPSRLPKTLNEEQVMDLL 121 Query: 184 S----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELP 238 + + E L +GLR ++ ++L ++ K V L Sbjct: 122 ECPNPLDPIELRDKAMLELLYATGLRVTELISLTTENLSLRQGVVRIIGKGDKERLVPLG 181 Query: 239 DGFMKLLAMTPIGKETFFINN----------DKQKMNATQFSIWFKAKATKAGVN---KS 285 + + +NN Q M F K A AG++ S Sbjct: 182 EEASYWIQEFFQYGRGILLNNEPSNVVFPSKRGQMMTRQTFWHRIKHYAVLAGIDSEKLS 241 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 H +R AT + GA + G + + YT A + RL Sbjct: 242 PHVLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVA-KARL 286 >gi|227503694|ref|ZP_03933743.1| site-specific tyrosine recombinase XerD [Corynebacterium accolens ATCC 49725] gi|227075730|gb|EEI13693.1| site-specific tyrosine recombinase XerD [Corynebacterium accolens ATCC 49725] Length = 296 Score = 139 bits (349), Expect = 8e-31, Method: Composition-based stats. Identities = 48/261 (18%), Positives = 91/261 (34%), Gaps = 22/261 (8%) Query: 90 NSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS--SAIQFLTSMRVLFKWA 147 N R Y D + + D R++T + + ++ + T + SA + L R L K+A Sbjct: 28 NYRRDIRRYVDWL-AVNEVQDLRQVTRPMVEAYLKDLRETMAVSSANRALIVARGLHKFA 86 Query: 148 VRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSG 203 V + + + V P + +++ Q + + R E L +G Sbjct: 87 VAEGEIDSDVAAEVSPPSTGQHLPETLSVDEVTQLIEATPTETPVDLRDRALLEVLYGTG 146 Query: 204 LRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDGFMKLLAM---------TPIGK 252 R S+ V + +++ + K V L + + Sbjct: 147 ARISEVISLNVDDVATGDDVLVLH-GKGDKERLVPLGSHARQAIDAYLVRARPVLGKGKT 205 Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMAT 310 F+N ++ K A ++ ++KS H +R AT + GA + Sbjct: 206 AALFLNTRGGALSRQSAWSIIKTAAQRSQLDKSISPHTLRHSFATHLLEGGADVRTVQEL 265 Query: 311 YGWKTVDQAETYTK-GADRIR 330 G +V + YT AD +R Sbjct: 266 LGHSSVTTTQIYTHVTADSLR 286 >gi|327402648|ref|YP_004343486.1| tyrosine recombinase XerD subunit [Fluviicola taffensis DSM 16823] gi|327318156|gb|AEA42648.1| tyrosine recombinase XerD subunit [Fluviicola taffensis DSM 16823] Length = 301 Score = 139 bits (349), Expect = 9e-31, Method: Composition-based stats. Identities = 51/285 (17%), Positives = 95/285 (33%), Gaps = 28/285 (9%) Query: 68 PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIR---SG 122 T+K + Y K SLA NS +++ ++ I T H++ + Sbjct: 5 ERTIKQFVH-YLKIER--SLAENSIFAYQQDIAKLRDFCESYTLSPEHIQTGHLKQFVAE 61 Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 + + S + ++ + F + V +E +P ++E PK + T E++ Sbjct: 62 LYDMGLSARSQARIISGWKQFFDFLVLEEIRKDDPSEALELPKIGRKLPEVLTIEEIDAL 121 Query: 183 KSFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQH--LQNNIFSIKTQKTGTIITVE 236 EG + + E L G+R S+ + + + K V Sbjct: 122 IDAIDLSSNEGQRNKAILETLYSCGIRVSELVSLRFEDCFFEEGFIRVI-GKGNKERLVP 180 Query: 237 LPDGF-----------MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284 + L + ++ F+N ++ K A AG+ K Sbjct: 181 VSPSVIEEVGEYVEHDRSNLLIKKGHEQFVFLNRRGAQLTRVMIFTIIKRLADLAGIKKN 240 Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 S H R AT + GA + G +++ E YT R Sbjct: 241 ISPHTFRHSFATHLIEGGANLRAIQDMLGHESITTTEIYTHLDQR 285 >gi|146312952|ref|YP_001178026.1| site-specific tyrosine recombinase XerD [Enterobacter sp. 638] gi|145319828|gb|ABP61975.1| tyrosine recombinase XerD subunit [Enterobacter sp. 638] Length = 298 Score = 139 bits (349), Expect = 9e-31, Method: Composition-based stats. Identities = 47/279 (16%), Positives = 94/279 (33%), Gaps = 26/279 (9%) Query: 73 WLISEYRKSAHW--GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH-----IRSGVES 125 LI ++ A W +LA N+ ++ + + + + Sbjct: 6 ALIEQFL-DALWLEKNLAENTLSAYRRDLTMLAEWLAHRGLSLEQAQRDDLQTLLAERMD 64 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + +S+ + L++MR LF+ R++ A +P + PK + ++ + + Sbjct: 65 GGYKATSSARLLSAMRRLFQHLYREKLRADDPSALLASPKLPQRLPKDLSEAQVDRLLQS 124 Query: 186 W----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG 240 + + E L +GLR S+ + + ++ K V L + Sbjct: 125 PTVDVPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEE 184 Query: 241 FMKLLAMTPIGKETFFIN----------NDKQKMNATQFSIWFKAKATKAGVN---KSAH 287 + + + +N Q+M F K AT AG++ S H Sbjct: 185 AVYWVETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYATLAGIDSEKLSPH 244 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 +R AT + GA + G + + YT A Sbjct: 245 VLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA 283 >gi|291286773|ref|YP_003503589.1| integrase family protein [Denitrovibrio acetiphilus DSM 12809] gi|290883933|gb|ADD67633.1| integrase family protein [Denitrovibrio acetiphilus DSM 12809] Length = 312 Score = 139 bits (349), Expect = 9e-31, Method: Composition-based stats. Identities = 35/264 (13%), Positives = 83/264 (31%), Gaps = 24/264 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITT------KHIRSGVESRKHTPSSAIQFLT 138 + ++ ++ + D I + + + + S+ + + Sbjct: 27 KGASDHTIKNYSRDLADLCMYLEDSAIDDIQDADFFTLRGFVAMLFDKGLAKSTIERKIA 86 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----QQFKSFWSEGSQPRL 194 ++ F + ++ + NP ++ PK++ + + + + + G + L Sbjct: 87 CLKSFFAFMQKKNHTDDNPARMLKFPKKEQKAFKVFNIDSIIALLDAPDKDKPAGMRDAL 146 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVEL-----------PDGFM 242 E + +G+R S+ + + I K V + D M Sbjct: 147 IQELMYGTGVRVSELVGLNLSDIDFGGMRILVRGKGKKERIVPIADMHIEMINDYLDVKM 206 Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300 + E FIN ++ + AG+ S H R AT + Sbjct: 207 DICNGYLPDNEAIFINKFGSRLTDRSVRRIVEKYLKIAGLPMDFSPHSFRHSYATHLLEG 266 Query: 301 GATAHELMATYGWKTVDQAETYTK 324 GA + + G +++ + YT Sbjct: 267 GADLRTIQSLLGHESLTTTQKYTH 290 >gi|255036556|ref|YP_003087177.1| tyrosine recombinase XerD [Dyadobacter fermentans DSM 18053] gi|254949312|gb|ACT94012.1| tyrosine recombinase XerD [Dyadobacter fermentans DSM 18053] Length = 298 Score = 139 bits (349), Expect = 9e-31, Method: Composition-based stats. Identities = 49/266 (18%), Positives = 97/266 (36%), Gaps = 27/266 (10%) Query: 85 GSLAVNSRISFESYFDQIIRKSG----DFDYRKITTKH---IRSGVESRKHTPSSAIQFL 137 SL+ NS ++ +++ D ++ +H + S + L Sbjct: 17 RSLSGNSVEAYVRDVEKLEEYLELSKADLAPARVQEEHLSAFLKYIAELGLAAHSQARML 76 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ----QFKSFWSEGSQPR 193 + ++ FK+ + + + +P +E P+ + + E+++ EG++ R Sbjct: 77 SGIKAFFKYLLLENEITEDPTELLESPRLPRKLPDVLSYEEIETMLSAIDHSTPEGTRNR 136 Query: 194 LAFEFLLYSGLRCSDS--CRAGVQHLQNNIFSIKTQKTGTIITVEL-----------PDG 240 E L SGLR S+ + H I K + V + D Sbjct: 137 AIMEVLYSSGLRVSELTDLQLTNCHFDIGFLRI-LGKGDKMRLVPIGREAIKYTQIYLDH 195 Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISA 298 +A ++ F+N +++ + K A KAG++K S H R AT Sbjct: 196 IRNDIAPQKGSEDIVFLNRRGGQLSRVMIFLMIKDTAEKAGIHKNVSPHTFRHSFATHLI 255 Query: 299 DAGATAHELMATYGWKTVDQAETYTK 324 + GA+ + G +++ E YT Sbjct: 256 EGGASLRAVQEMLGHESITTTEIYTH 281 >gi|212710035|ref|ZP_03318163.1| hypothetical protein PROVALCAL_01088 [Providencia alcalifaciens DSM 30120] gi|212687242|gb|EEB46770.1| hypothetical protein PROVALCAL_01088 [Providencia alcalifaciens DSM 30120] Length = 300 Score = 139 bits (349), Expect = 9e-31, Method: Composition-based stats. Identities = 47/285 (16%), Positives = 98/285 (34%), Gaps = 26/285 (9%) Query: 74 LISEYRKSAHW--GSLAVNSRISFESYFDQI-----IRKSGDFDYRKITTKHIRSGVESR 126 LI ++ + W LA N+ S+ + + ++ + I + + Sbjct: 9 LIEQFLDTI-WLEQDLAENTLASYRNDLQSLDRWLDKQQLHLETVQSIDLQSFLAERIDG 67 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ----QF 182 + +S+ + L+S+R LF++ R++ + +P + PK + +++ ++ Sbjct: 68 GYKAASSARLLSSIRRLFQYFYREKIRSDDPSAVIAAPKIPQRLPKDLSEKQVEDLLNAP 127 Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG- 240 + S + + E L GLR S+ + ++ K + L + Sbjct: 128 ATEDSLELRDKAMLEVLYACGLRVSELTGLTFSDISLRQGVVRVVGKGDKERLIPLGEEA 187 Query: 241 ---FMKLLAMTPIG------KETFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAHG 288 K +A + F + KM F K A A ++ S H Sbjct: 188 IYWLEKYIAEGRPDLLNGKTSDVLFPSKRGTKMTRQTFWHRIKYYAVLANIDGEALSPHV 247 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 +R AT + GA + G + + YT A + Sbjct: 248 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRAL 292 >gi|152979420|ref|YP_001345049.1| site-specific tyrosine recombinase XerD [Actinobacillus succinogenes 130Z] gi|150841143|gb|ABR75114.1| tyrosine recombinase XerD [Actinobacillus succinogenes 130Z] Length = 297 Score = 139 bits (349), Expect = 9e-31, Method: Composition-based stats. Identities = 45/270 (16%), Positives = 96/270 (35%), Gaps = 24/270 (8%) Query: 85 GSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFLTS 139 L+ N+ S+ + + + ++S + R + +S + L++ Sbjct: 18 KGLSENTIQSYRLDLAALCDWLNAHSLSLISLDAVDLQSFLGQRVEAGYKATSTARLLSA 77 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRLA 195 MR LF++ R+ Y +P ++ PK T + T++ + S + + Sbjct: 78 MRKLFQYLYRENYRPDDPSATLSSPKLPTRLPKYLTEQQVNDLLSVPSTDVPLELRDKAM 137 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFM----------KL 244 E L +GLR ++ + ++ + ++ K V + + + Sbjct: 138 LELLYATGLRVTELVSLSMDNISLSQGVVRVIGKGNKERIVPMGEEAAYWVGEFIRYGRA 197 Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKFSATISADAG 301 + + + F + +M F K A A ++ S H +R AT + G Sbjct: 198 MLLNGQSSDVVFPSRRALQMTRQTFWHRIKYYAVLADIDGDSLSPHVLRHAFATHLVNHG 257 Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRL 331 A + G + + YT A + RL Sbjct: 258 ADLRVVQMLLGHSDLSTTQIYTHVA-KERL 286 >gi|295133714|ref|YP_003584390.1| tyrosine recombinase [Zunongwangia profunda SM-A87] gi|294981729|gb|ADF52194.1| tyrosine recombinase [Zunongwangia profunda SM-A87] Length = 299 Score = 139 bits (349), Expect = 9e-31, Method: Composition-based stats. Identities = 54/277 (19%), Positives = 102/277 (36%), Gaps = 25/277 (9%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIR----KSGDFDYRKITTKHIRSGVE- 124 ++++ +Y L+VNS S+E ++I KS I + ++ + Sbjct: 3 WEYILKDYLTYLKLERGLSVNSISSYELDLIKLINFLKVKSISASPLTIDQETLQLFLYE 62 Query: 125 -SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 +++ S + ++ ++ F + + ++Y NP +E PK + + E++ + Sbjct: 63 IAKELNSRSRARIISGLKSFFNYLIFEDYRKDNPTDLIEAPKIGRKLPETISVEEIDELI 122 Query: 184 SFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELP 238 + EG + R E L GLR S+ + L IK T K V + Sbjct: 123 AAIDLTKTEGERNRAIIETLYGCGLRVSELTNLRISDLYFEEGFIKVTGKGDKQRFVPIS 182 Query: 239 D-----------GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--S 285 D + P +T F+N ++ + A KA + K S Sbjct: 183 DYNIKYITIYKDQVRAHQEIKPEASDTLFLNRRGAQLTRAMIFTIIRQLAEKANIRKKIS 242 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 H R AT + GA + G +++ E Y Sbjct: 243 PHTFRHSFATHLLENGADLRAIQQMLGHESITTTEIY 279 >gi|288555956|ref|YP_003427891.1| integrase/recombinase [Bacillus pseudofirmus OF4] gi|288547116|gb|ADC50999.1| integrase/recombinase [Bacillus pseudofirmus OF4] Length = 295 Score = 139 bits (349), Expect = 9e-31, Method: Composition-based stats. Identities = 42/263 (15%), Positives = 95/263 (36%), Gaps = 23/263 (8%) Query: 85 GSLAVNSRISFESYF---DQIIRKSGDFDYRKITTKHIRSG----VESRKHTPSSAIQFL 137 LA N+ S+ + ++ D K T+H+ ++ + ++ + + Sbjct: 16 RGLAENTIQSYRRDLLNYAKFLQNVIDIQTFKDVTRHMIVDYLFFLKEQGRAEATIARTI 75 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS---QPRL 194 S+R ++ +R++ +P + ++ PK + + E+++ + + + R Sbjct: 76 ASIRAFHQFLLREKLSEQDPSVHLDIPKASKRLPKVLSLEEVEALLTISGQDHLSIRNRA 135 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAM------ 247 E L +G+R S+ + ++ ++ K + L K L + Sbjct: 136 MMETLYATGMRVSELINLKLTDTHLSMGFVRCIGKGNKERIIPLGQQATKALQLYLEQAR 195 Query: 248 ----TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAG 301 E F+N+ + + F K A A + K + H +R AT + G Sbjct: 196 STMLKKNRHEYVFVNHYGRPLTRQGFWKIVKKLAEAAKIEKELTPHTLRHSFATHLLENG 255 Query: 302 ATAHELMATYGWKTVDQAETYTK 324 A + G + + YT Sbjct: 256 ADLRAVQEMLGHVDISTTQIYTH 278 >gi|254229667|ref|ZP_04923077.1| tyrosine recombinase XerD [Vibrio sp. Ex25] gi|262395210|ref|YP_003287064.1| site-specific recombinase XerD [Vibrio sp. Ex25] gi|151937788|gb|EDN56636.1| tyrosine recombinase XerD [Vibrio sp. Ex25] gi|262338804|gb|ACY52599.1| site-specific recombinase XerD [Vibrio sp. Ex25] Length = 305 Score = 139 bits (349), Expect = 9e-31, Method: Composition-based stats. Identities = 47/278 (16%), Positives = 102/278 (36%), Gaps = 26/278 (9%) Query: 74 LISEYRKSAHW--GSLAVNSRISFESYFDQIIRKSGDFDYRKITT-----KHIRSGVESR 126 L+ ++ A W L+ N+ S+ + +++ YR + +S + Sbjct: 14 LVEQFL-DAMWMERGLSENTLASYRNDLMKLLTWMEKHRYRLDFISLSGLQEYQSYLVDL 72 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF- 185 + +S + L+++R LF++ R++ A +P + PK + ++E + Sbjct: 73 DYKQTSRARMLSAIRRLFQYLHREKVRADDPSALLVSPKLPQRLPKDISEEQVDALLEAP 132 Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGF 241 + + E L +GLR ++ ++++ ++ T K G V + + Sbjct: 133 DPNDPVELRDKAMLELLYATGLRVTELVSLTMENISLRQGVVRVTGKGGKERLVPMGENA 192 Query: 242 MKLLAM----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHG 288 + + + F + ++M F K A AG++ S H Sbjct: 193 VDWIETFIQQGRPALLGDTSSDIVFPSKRARQMTRQTFWHRIKYYALIAGIDTEQLSPHV 252 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 +R AT + GA + G + + YT A Sbjct: 253 LRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVA 290 >gi|152976499|ref|YP_001376016.1| site-specific tyrosine recombinase XerD [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152025251|gb|ABS23021.1| tyrosine recombinase XerD [Bacillus cytotoxicus NVH 391-98] Length = 296 Score = 139 bits (349), Expect = 9e-31, Method: Composition-based stats. Identities = 39/271 (14%), Positives = 97/271 (35%), Gaps = 25/271 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFD-------YRKITTKHIRSGVESRKHTPSSAIQFL 137 LA N+ +S+E ++ + ++ + + + + + + Sbjct: 16 KGLAKNTVVSYERDLKSYVKYLQKVEQMKTFHEVTRMQIVNFLQHLRENGKSSKTLARHI 75 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPR 193 S+R ++ +R+ V +P + +E P+ + + + + +++ G + + Sbjct: 76 ASIRSFHQFLLRERAVEHDPSVHIETPQGERKLPKVLSVSEVEALLQTPKTTSAYGIRDK 135 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLAMTPIGK 252 E L +GLR S+ ++ + + ++ K + L + + Sbjct: 136 AMLELLYATGLRVSELIALNLEDVHLTMGFVRCVGKGNKERIIPLGSLATEAIQRYIEKG 195 Query: 253 ----------ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300 + F+N+ +++ F K A +A + K + H +R AT + Sbjct: 196 RKELMGKKAVDALFLNHHGNRLSRQGFWKILKRLAKEANIEKELTPHTLRHSFATHLLEN 255 Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRL 331 GA + G + + YT + RL Sbjct: 256 GADLRAVQEMLGHADISTTQIYTH-VSKTRL 285 >gi|283835346|ref|ZP_06355087.1| tyrosine recombinase XerD [Citrobacter youngae ATCC 29220] gi|291068511|gb|EFE06620.1| tyrosine recombinase XerD [Citrobacter youngae ATCC 29220] Length = 298 Score = 138 bits (348), Expect = 1e-30, Method: Composition-based stats. Identities = 42/265 (15%), Positives = 89/265 (33%), Gaps = 23/265 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDY-----RKITTKHIRSGVESRKHTPSSAIQFLTS 139 +LA N+ ++ ++ + + + + + +S+ + L++ Sbjct: 19 RNLAENTLSAYRRDLSMLVEWLHHRGVSLATAQSDDLQALLAERMDGGYKATSSARLLSA 78 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195 R F+ R++Y +P S+ PK + ++ +++ + + Sbjct: 79 TRRFFQHLYREKYREDDPSASLASPKLPQRLPKDLSEAQVERLLQAPLIEQPLELRDKAM 138 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGKET 254 E L +GLR S+ + + ++ K V L + + L Sbjct: 139 LEVLYATGLRVSELVGLTMSDVSLRQGVVRVIGKGNKERLVPLGEEAVYWLETYLEHGRP 198 Query: 255 FFIN----------NDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAG 301 + +N Q+M F K A AG++ S H +R AT + G Sbjct: 199 WLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHAFATHLLNHG 258 Query: 302 ATAHELMATYGWKTVDQAETYTKGA 326 A + G + + YT A Sbjct: 259 ADLRVVQMLLGHSDLSTTQIYTHVA 283 >gi|154494032|ref|ZP_02033352.1| hypothetical protein PARMER_03377 [Parabacteroides merdae ATCC 43184] gi|154086292|gb|EDN85337.1| hypothetical protein PARMER_03377 [Parabacteroides merdae ATCC 43184] Length = 301 Score = 138 bits (348), Expect = 1e-30, Method: Composition-based stats. Identities = 47/275 (17%), Positives = 96/275 (34%), Gaps = 27/275 (9%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQII-------RKSGDFDYRKITTKHIRSGVESR 126 I Y+ +L+ NS ++ + D++ +K D Y + + + Sbjct: 8 IERYKTYLRLEKALSANSIDAYLTDLDKLTNFVESEGKKYADVTYDDLQQ--FVARLHDI 65 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF- 185 P S + ++ ++ +++ +Y+ +P +E PK + T ++ Sbjct: 66 GIHPRSQARIISGIKSFYRFLFLDDYITTDPTELLESPKIGLKLPEVLTVNEINSILDTI 125 Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT-VELPDGF 241 EG + R E L GLR S+ + + IK + G+ V + + Sbjct: 126 DLTLPEGQRNRAMLEVLYSCGLRVSELVSLRFTDVYFDEGFIKVEGKGSKQRLVPISETA 185 Query: 242 ----------MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289 +A+ ++ F++ ++ K + AG+ K S H Sbjct: 186 IKEIKNYLYDRNHVAVKKGFEDILFLSRRGTALSRIMVFHIIKQQTEMAGIKKNVSPHTF 245 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 R AT + GA + G + + E YT Sbjct: 246 RHSFATHLLEGGANLLAIQEMLGHEKITTTEIYTH 280 >gi|206576348|ref|YP_002236649.1| tyrosine recombinase XerD [Klebsiella pneumoniae 342] gi|290511308|ref|ZP_06550677.1| tyrosine recombinase XerD [Klebsiella sp. 1_1_55] gi|206565406|gb|ACI07182.1| tyrosine recombinase XerD [Klebsiella pneumoniae 342] gi|289776301|gb|EFD84300.1| tyrosine recombinase XerD [Klebsiella sp. 1_1_55] Length = 298 Score = 138 bits (348), Expect = 1e-30, Method: Composition-based stats. Identities = 42/270 (15%), Positives = 96/270 (35%), Gaps = 24/270 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESR---KHTPSSAIQFLTS 139 +LA N+ ++ ++ + + +++ + R + +S + L++ Sbjct: 19 RNLAENTLSAYRRDLTMLVEWLHHRGLSLASVGSDDLQALLAERQTGGYKATSTARLLSA 78 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195 +R F+ R++ +P + PK + ++ +++ + + Sbjct: 79 VRRFFQHLYREKIRPDDPSALLASPKLPQRLPKDLSEAQVERLLQAPLVEQPLELRDKAM 138 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLA-------- 246 E L +GLR S+ + + ++ K V L + + + Sbjct: 139 LEVLYATGLRVSELVGLTMSDISLRQGVLRVIGKGNKERLVPLGEEAVMWVENYLEYGRP 198 Query: 247 --MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAG 301 + + + F + Q+M F K A AG++ S H +R AT + G Sbjct: 199 WLLNGVASDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSAKLSPHVLRHAFATHLLNHG 258 Query: 302 ATAHELMATYGWKTVDQAETYTKGA-DRIR 330 A + G + + YT A +R+R Sbjct: 259 ADLRVVQMLLGHSDLSTTQIYTHVATERLR 288 >gi|167753897|ref|ZP_02426024.1| hypothetical protein ALIPUT_02182 [Alistipes putredinis DSM 17216] gi|167658522|gb|EDS02652.1| hypothetical protein ALIPUT_02182 [Alistipes putredinis DSM 17216] Length = 298 Score = 138 bits (348), Expect = 1e-30, Method: Composition-based stats. Identities = 45/260 (17%), Positives = 92/260 (35%), Gaps = 20/260 (7%) Query: 85 GSLAVNSRISFESYFD---QIIRKSGDFDYRKITT---KHIRSGVESRKHTPSSAIQFLT 138 L+ N+ S+ I + D RK+ + + + + +S + L+ Sbjct: 23 KRLSENTVESYMRDLRQFAHFILRFYDVPPRKVEAPMIERYLALLYDQGREKTSQARALS 82 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRL 194 +R + + + + + P ++ PK T E++ + + +G + Sbjct: 83 GIRSFYNYLMLTDVIDSTPTQFIDTPKFGRHLPDILTVEEIDRIVAAVDTSTVKGRRDSA 142 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLL-------A 246 E L GLR S+ + L I+ T K V + + + A Sbjct: 143 MLEVLYSCGLRVSELTSLRLGDLFFGEGYIRVTGKGDKQRLVPVSGAAREKIQRYLDDRA 202 Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATA 304 + F+NN ++ + +AG++K S H R AT + GA+ Sbjct: 203 TKTSASDVVFLNNRGTQLTRVMVFTILREAVHRAGIDKHISPHTFRHSFATHLLEGGASI 262 Query: 305 HELMATYGWKTVDQAETYTK 324 ++ G +++ E YT Sbjct: 263 RQVQEMLGHESILTTEIYTH 282 >gi|120436224|ref|YP_861910.1| tyrosine recombinase [Gramella forsetii KT0803] gi|117578374|emb|CAL66843.1| tyrosine recombinase [Gramella forsetii KT0803] Length = 298 Score = 138 bits (348), Expect = 1e-30, Method: Composition-based stats. Identities = 51/280 (18%), Positives = 94/280 (33%), Gaps = 28/280 (10%) Query: 77 EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE------SRKHTP 130 +Y L+ NS ++ ++I + + K ++ S+ Sbjct: 11 QYYLKLE-RGLSENSIANYSLDVIKLINYLDVNEIQISPDKISEKWIQEFIYSVSKDLNA 69 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS--- 187 S + ++ +R F + + ++Y NP +E PK + + ++ + + Sbjct: 70 RSQSRLISGLRSFFSYLLFEDYRKDNPLDLMESPKIGRKLPDTISIAEVDKIIAAIDLSK 129 Query: 188 -EGSQPRLAFEFLLYSGLRCSDSCRAGVQH--LQNNIFSIKTQKTGTIITVELP------ 238 EG + R E L GLR S+ + + + T K V + Sbjct: 130 NEGERNRAIIETLYGCGLRVSELTDLKISDLFFKEGFIKV-TGKGDKQRFVPISEYTVKF 188 Query: 239 -----DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRK 291 D + P +T F+N K+ K AG++K S H R Sbjct: 189 INLYKDQVRNHQDIKPEATDTLFLNRRGNKLTRAMIFTIVKKLTEVAGISKKVSPHTFRH 248 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 AT + GA + G +++ E Y DR L Sbjct: 249 SFATHLLENGADLRAIQQMLGHESITTTEVYVH-VDRSHL 287 >gi|163803381|ref|ZP_02197257.1| tyrosine recombinase [Vibrio sp. AND4] gi|159172843|gb|EDP57685.1| tyrosine recombinase [Vibrio sp. AND4] Length = 305 Score = 138 bits (348), Expect = 1e-30, Method: Composition-based stats. Identities = 44/278 (15%), Positives = 104/278 (37%), Gaps = 26/278 (9%) Query: 74 LISEYRKSAHW--GSLAVNSRISFESYFDQII----RKSGDFDYRKIT-TKHIRSGVESR 126 L+ ++ A W L+ N+ S+ + +++ + + ++ + +S + Sbjct: 14 LVEQFL-DAMWMERGLSENTLASYRNDLMKLLVWMEQHCYHLSFISLSGLQEYQSYLVDL 72 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF- 185 + +S + L+++R LF++ R++ + +P + PK + ++E + Sbjct: 73 DYKQTSRARMLSAIRRLFQYIHREKVRSDDPSALLVSPKLPQRLPKDISEEQVDALLDAP 132 Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGF 241 + + E L +GLR ++ ++++ ++ T K G V + + Sbjct: 133 DPNDPIELRDKAMLELLYATGLRVTELVSLTMENVSLRQGVVRVTGKGGKERLVPMGENA 192 Query: 242 MKLLAMTPIGK----------ETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHG 288 + + + F + ++M F K A AG++ S H Sbjct: 193 VDWIETFIKQGRPALLGEKTSDVVFPSKRARQMTRQTFWHRIKHYAVIAGIDTGHLSPHV 252 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 +R AT + GA + G + + YT A Sbjct: 253 LRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVA 290 >gi|323173892|gb|EFZ59521.1| tyrosine recombinase XerD [Escherichia coli LT-68] Length = 298 Score = 138 bits (348), Expect = 1e-30, Method: Composition-based stats. Identities = 43/270 (15%), Positives = 95/270 (35%), Gaps = 24/270 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDY-----RKITTKHIRSGVESRKHTPSSAIQFLTS 139 +LA N+ ++ ++ + + + + + +S+ + L++ Sbjct: 19 KNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGYKATSSARLLSA 78 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195 +R LF++ R+++ +P + PK + ++ +++ + + Sbjct: 79 VRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLIDQPLELRDKAM 138 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGKET 254 E L +GLR S+ + + ++ K V L + + L Sbjct: 139 LEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVYWLETYLEHGRP 198 Query: 255 FFIN----------NDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAG 301 + +N Q+M F K A AG++ S H +R AT + G Sbjct: 199 WLLNCVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHAFATHLLNHG 258 Query: 302 ATAHELMATYGWKTVDQAETYTKGA-DRIR 330 A + G + + YT A +R+R Sbjct: 259 ADLRVVQMLLGHSDLSTTQIYTHVATERLR 288 >gi|300870084|ref|YP_003784955.1| tyrosine recombinase XerD [Brachyspira pilosicoli 95/1000] gi|300687783|gb|ADK30454.1| tyrosine recombinase, XerD [Brachyspira pilosicoli 95/1000] Length = 288 Score = 138 bits (348), Expect = 1e-30, Method: Composition-based stats. Identities = 56/262 (21%), Positives = 97/262 (37%), Gaps = 22/262 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESRKH---TPSSAIQFLTS 139 L+ N+ S+ + G K T K I + RK + + S Sbjct: 3 KGLSQNTLESYRRDIVIYLDFLGRNKKTILKATRKDIEKFLSERKEQGSKSRTVARNKVS 62 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRLA 195 + L+K+ V + Y++ NP ++E + K T E++ S +G + + Sbjct: 63 IVNLYKFLVMENYISKNPTDNLEVIRLKRVLPESLTTEEVDDLLSVHNEKTDKGLRDKAI 122 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLAMTP----- 249 FE + SGLR S+ C ++ + + +K K V + D + +L Sbjct: 123 FELMYSSGLRVSEICSLKIEDIFFDEKYLKICGKGKRERIVPINDKALDILKRYIQTSRV 182 Query: 250 ---IGKET--FFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGA 302 GK+T F+N K++ K K+G+ K+ H +R AT GA Sbjct: 183 VMVKGKKTSELFLNFRGDKISRVGIWKIVKEAMKKSGIEKNVYPHTLRHSFATHLIQHGA 242 Query: 303 TAHELMATYGWKTVDQAETYTK 324 + G + E YT Sbjct: 243 DLRSVQRMLGHSDITTTEIYTH 264 >gi|283788448|ref|YP_003368313.1| tyrosine recombinase [Citrobacter rodentium ICC168] gi|282951902|emb|CBG91620.1| tyrosine recombinase [Citrobacter rodentium ICC168] Length = 298 Score = 138 bits (348), Expect = 1e-30, Method: Composition-based stats. Identities = 41/265 (15%), Positives = 89/265 (33%), Gaps = 23/265 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDY-----RKITTKHIRSGVESRKHTPSSAIQFLTS 139 +LA N+ ++ ++ + + + + + +S + L++ Sbjct: 19 KNLAENTLSAYRRDLTMLVEWLAHRKASLETAQSEDLQALLAERMDGGYKATSTARLLSA 78 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195 +R LF+ R++ +P ++ PK + ++ +++ + + Sbjct: 79 VRRLFQHLYREKIRPDDPSAALASPKLPQRLPKDLSEAQVERLLQAPVVDQPLELRDKAM 138 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGKET 254 E L +GLR S+ + + ++ K V L + + L Sbjct: 139 LEILYATGLRVSELVGLTMSDVSLRQGVVRVIGKGNKERLVPLGEEAVYWLETYLEHGRP 198 Query: 255 FFIN----------NDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAG 301 + +N Q+M F K A AG++ S H +R AT + G Sbjct: 199 WLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHAFATHLLNHG 258 Query: 302 ATAHELMATYGWKTVDQAETYTKGA 326 A + G + + YT A Sbjct: 259 ADLRVVQMLLGHSDLSTTQIYTHVA 283 >gi|238786426|ref|ZP_04630347.1| Phage integrase [Yersinia bercovieri ATCC 43970] gi|238712669|gb|EEQ04760.1| Phage integrase [Yersinia bercovieri ATCC 43970] Length = 270 Score = 138 bits (348), Expect = 1e-30, Method: Composition-based stats. Identities = 57/271 (21%), Positives = 97/271 (35%), Gaps = 25/271 (9%) Query: 7 LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66 +PP R R GK Y FR GR IRL S A E + +K Sbjct: 13 MPP-----RVRKGKSAYEFRAIDGRTIRLCSFECSQ--ADVWIAF-------EKLMISQK 58 Query: 67 KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126 + +T LI+E+ S + LA +++ + Y +II G I +HIR ++ R Sbjct: 59 EDSTFAGLINEFLLSGDFCELAFDTQKDYRKYSSKIIAVFGKMSPDNIKPEHIRKYMDKR 118 Query: 127 KHTPS-SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 A + + M +F+W V +NPC V++ K K R T ++ Sbjct: 119 GAKSRVQANREKSFMSRVFRWGYEHGKVKLNPCQGVKQFKEKAR-TRYITDDEYIALYDV 177 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245 ++A E R +D + + + I+ KTG +++ Sbjct: 178 APA--VVKVAMELAYLCCTRQADILDMKIGQILESGILIQQSKTGVAQIKAWTPRLHEVI 235 Query: 246 AMTPI-----GKETFFI--NNDKQKMNATQF 269 + G + ++ + F Sbjct: 236 RLASTLPLNSGVMSIYLLHQQSGSRFTRDSF 266 >gi|319651425|ref|ZP_08005554.1| tyrosine recombinase [Bacillus sp. 2_A_57_CT2] gi|317396956|gb|EFV77665.1| tyrosine recombinase [Bacillus sp. 2_A_57_CT2] Length = 297 Score = 138 bits (347), Expect = 1e-30, Method: Composition-based stats. Identities = 41/265 (15%), Positives = 97/265 (36%), Gaps = 25/265 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKS-------GDFDYRKITTKHIRSGVESRKHTPSSAIQFL 137 LA N+ +S+E ++ ++ ++ + + + + + Sbjct: 16 KGLAKNTIVSYERDLKSYLKYLKSEEKISSLESVQRTQIVQFLGFLKKQGKSSKTLARHI 75 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPR 193 S+R ++ +R++ V +P + +E P+ + + ++++ F G + + Sbjct: 76 ASIRAFHQFLLREKAVGHDPSVHIETPQMERSLPKVLNMQEVETLLDFPEIKDHFGLRDK 135 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLL------- 245 E L +G+R S+ + + + ++ K V + + L Sbjct: 136 AMLELLYATGIRVSELIGLNIGDVHLTMGFVRCIGKGNKERIVPIGKTASEALEKYLNEG 195 Query: 246 ----AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299 A E F+N+ ++++ F K A +AG+ K + H +R AT + Sbjct: 196 RGKFAPKKHKDEALFLNHHGKRLSRQGFWKILKRLAQEAGIEKELTPHTLRHSFATHLLE 255 Query: 300 AGATAHELMATYGWKTVDQAETYTK 324 GA + G + + YT Sbjct: 256 NGADLRAVQEMLGHADISTTQIYTH 280 >gi|325971096|ref|YP_004247287.1| tyrosine recombinase xerC [Spirochaeta sp. Buddy] gi|324026334|gb|ADY13093.1| Tyrosine recombinase xerC [Spirochaeta sp. Buddy] Length = 300 Score = 138 bits (347), Expect = 1e-30, Method: Composition-based stats. Identities = 50/276 (18%), Positives = 98/276 (35%), Gaps = 20/276 (7%) Query: 74 LISEYRKSAHWGS-LAVNSRISFESYFDQIIRKSGDFDY--RKITTKHIRSGVESRKHTP 130 LI +Y L+ ++ + + D++ + +I V++R + Sbjct: 10 LIEDYTDYLAMQRRLSEATQSVYAHELALFLAAGSDYETITASLIEAYIVIQVQTRHLSE 69 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS--- 187 S + L+++R F + + NP L ++R ++K + + + Sbjct: 70 RSVAKLLSALRSFFSFLQMSKIREDNPVLLIQRGRQKQSLPQVASVAQVDALLESIDTSD 129 Query: 188 -EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP-------D 239 G + R FE + GLR S++C V Q + K I + + D Sbjct: 130 LLGFRDRTLFELIYSCGLRISEACTLQVSDYQKTSIRV-VGKRHKIRIIPVGEIARMWVD 188 Query: 240 GFMKLLAMTPIG----KETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSAT 295 ++K + IG + F+ ++ F A AG++ H +R AT Sbjct: 189 AYLKDIRPKLIGMRLSTKALFVGRRGHQLTRQAMYKRFIAYCDVAGLDAKVHTLRHSFAT 248 Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 + GA + G + + YT D +L Sbjct: 249 HLLEGGADLRSVQELLGHSDIKTTQIYTH-VDTKQL 283 >gi|187250579|ref|YP_001875061.1| integrase family protein [Elusimicrobium minutum Pei191] gi|186970739|gb|ACC97724.1| Integrase family protein [Elusimicrobium minutum Pei191] Length = 295 Score = 138 bits (347), Expect = 1e-30, Method: Composition-based stats. Identities = 44/279 (15%), Positives = 107/279 (38%), Gaps = 20/279 (7%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD------YRKITTKHIRSGVES 125 LI+++ S + + ++ ++ + + + + + + Sbjct: 5 ASLINKFILSLQSKNFSRHTLRAYTADLKDVENYMAEHNLTAAEFFTHTKLRGYLGVTSE 64 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + ++ ++ ++ MR K+ ++ E + NP + PKR+ + T+E+ + Sbjct: 65 GDYKKNTVLRKISVMRSFAKYLLKHEVIKNNPFKLLPLPKREKLLPKFLTQEETDRLIDT 124 Query: 186 W----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-IITVELPD- 239 ++ + FE + SGLR S+ ++ + N+ ++ G+ V + D Sbjct: 125 AANQGKLPARDKALFELIYSSGLRRSEVTGLSIKDIDLNLGVVRVMGKGSKERLVPITDL 184 Query: 240 ---GFMKLLAMTPI--GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKF 292 + L+ + + F+N ++ + K KA + + +AH +R Sbjct: 185 AIEALKEYLSTRGVYNSGDPLFLNRLGGRLTGDGLAYLVKNITIKANLARKVTAHSLRHS 244 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTK-GADRIR 330 AT + G L G K++ + YT DR++ Sbjct: 245 FATHMLNNGCDLRSLQEMLGHKSLSATQVYTHVSLDRLK 283 >gi|225013068|ref|ZP_03703483.1| integrase family protein [Flavobacteria bacterium MS024-2A] gi|225002796|gb|EEG40777.1| integrase family protein [Flavobacteria bacterium MS024-2A] Length = 289 Score = 138 bits (347), Expect = 1e-30, Method: Composition-based stats. Identities = 44/250 (17%), Positives = 87/250 (34%), Gaps = 23/250 (9%) Query: 94 SFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYV 153 + ++I D + + ++ +P + + L+ +R F + + + Y Sbjct: 25 QYFLINEKIEESPTDCSLDSVQKFIYET---AKILSPHTQARRLSGLRSFFDYLIFESYR 81 Query: 154 AINPCLSVERPKRKTEGIRPWTKEDMQ----QFKSFWSEGSQPRLAFEFLLYSGLRCSDS 209 NP +E PK + + E+++ Q +G + R E L SG+R S+ Sbjct: 82 TSNPTDLIEAPKLGRKLPDVLSTEEIELMINQINLSHPQGQRNRAILEILYGSGIRVSEL 141 Query: 210 CRAGVQH--LQNNIFSIKTQKTGTIITVEL----PDGFMKLLAMTPI-------GKETFF 256 + + + ++ + K V + + + + T K+ F Sbjct: 142 TNLSLSNLFFEEDMIRVH-GKGNKQRLVPMGGISKEFLEEYITETRKNQKISVKDKDIVF 200 Query: 257 INNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWK 314 +N + K A KA V K H R AT + GA + G + Sbjct: 201 LNRRGNGLTRQMIFTLIKDLAIKANVKKQVGPHTFRHSFATHLLENGADLRTIQILMGHE 260 Query: 315 TVDQAETYTK 324 ++ E YT Sbjct: 261 SITTTEIYTH 270 >gi|126663469|ref|ZP_01734466.1| site-specific recombinase [Flavobacteria bacterium BAL38] gi|126624417|gb|EAZ95108.1| site-specific recombinase [Flavobacteria bacterium BAL38] Length = 299 Score = 138 bits (347), Expect = 1e-30, Method: Composition-based stats. Identities = 52/290 (17%), Positives = 99/290 (34%), Gaps = 28/290 (9%) Query: 70 TLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYR----KITTKHIRSGVE 124 T + I EY+ L+ N+ ++ ++++ D + I+ + I+ + Sbjct: 3 TWQSYIKEYQNYLRLERGLSKNTIENYTFDIEKLVVFLNTHDIQVSPIHISEETIQQFIY 62 Query: 125 SRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 S + ++ ++ F + V ++Y P +E PK + E++ Sbjct: 63 EIASKVNARSQSRLISGLKSFFNYLVFEDYRKDTPLELIEVPKTGRKLPDTLATEEIDAL 122 Query: 183 KSF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH--LQNNIFSIKTQKTGTIITVE 236 + EG + R E L GLR S+ + + I T K V Sbjct: 123 IAAIDLSTPEGERNRAMLETLYSCGLRVSELVGLKISDLFFEEGFIKI-TGKGNKQRFVP 181 Query: 237 L-----------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284 + + + ++T F+N +++ K A K +NK Sbjct: 182 VGGSTIKYITSYMNLIRVHYTVQKGHEDTLFLNRRGKQLTRAMVFTIIKDLAVKINLNKT 241 Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 S H R AT + GA + G +++ E Y DR L Sbjct: 242 ISPHTFRHSFATHLLENGADLRSIQLMLGHESITTTEVYMH-LDRKFLSE 290 >gi|293606638|ref|ZP_06688993.1| phage integrase family site-specific recombinase [Achromobacter piechaudii ATCC 43553] gi|292814922|gb|EFF74048.1| phage integrase family site-specific recombinase [Achromobacter piechaudii ATCC 43553] Length = 329 Score = 138 bits (347), Expect = 1e-30, Method: Composition-based stats. Identities = 57/327 (17%), Positives = 108/327 (33%), Gaps = 37/327 (11%) Query: 7 LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHE-STFIPAYMSALTGSTPKREYINSPR 65 LPP V ++ HG YY + G R+ P + + + + G E + + Sbjct: 11 LPPCVYEK---HG-AYYYVKAGKWTRLAADLPAALTEYARRFDNPRGGMPELVEKVLTHI 66 Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125 L+ N+ ++ +I +F +I KH+ + Sbjct: 67 S------------------PKLSKNTIHQYKIAAARIKDSFAEFAPDQIRPKHVAALKMD 108 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 TP+ A + L+ ++ +F AV + V NPC+ + R + + R T ++ + Sbjct: 109 MADTPNMANRVLSFLKTVFAHAVEWQLVDSNPCVGIRR-HAEGKRQRYITDDEYAAIYA- 166 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245 + ++ + L +G R D + + QKTG + V + Sbjct: 167 -KANPRMQVIMDLLYLTGQRVGDVIAIKRADMNEEGIAFDQQKTGAKLLVRWTPELRDAI 225 Query: 246 AMTPIGKETF----FINNDKQKMNATQFSI---WFKAKATKAGV-NKSAHGVRKFSATIS 297 + A + +K AGV + H +R S T + Sbjct: 226 SRANALNGNVLGPTLFRTRSHGKTAPSYGATRDQWKDAVDAAGVPDAHIHDLRAKSLTDA 285 Query: 298 ADAGATAHELMATYGWKTVDQAETYTK 324 G A L G + + Y + Sbjct: 286 KRQGKDAQMLA---GHTSPTMTDRYIR 309 >gi|254258575|ref|ZP_04949629.1| tyrosine recombinase XerD [Burkholderia pseudomallei 1710a] gi|254217264|gb|EET06648.1| tyrosine recombinase XerD [Burkholderia pseudomallei 1710a] Length = 333 Score = 138 bits (347), Expect = 1e-30, Method: Composition-based stats. Identities = 53/307 (17%), Positives = 97/307 (31%), Gaps = 28/307 (9%) Query: 52 TGSTPKREYINSPRKKPTTLKWLISE----YRKSAHW--GSLAVNSRISFESYFDQIIRK 105 G P + + WL S A W L+ N+ ++ + Sbjct: 17 AGRAPAQPADRPVDALAASPAWLDSRASIDLFCDAMWLEHGLSRNTLDAYRRDLQLFAQW 76 Query: 106 SGDFDYRKIT---TKHIRSGVESRKH-TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV 161 + + + +R +S+ + L+ R + WAVR+ A++P L + Sbjct: 77 LAARHVASVDHASEPTLTEYIAARSDGKATSSNRRLSVFRRYYGWAVREHRAAVDPTLRI 136 Query: 162 ERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL 217 K+ ++ ++ + G + R E + SGLR S+ + Sbjct: 137 ASAKQAPRFPSTLSEAQVEALLAAPDVDTPLGLRDRTMLELMYASGLRVSELVTLKTVEV 196 Query: 218 QNNIFSIKTQKTGTIITV---------ELPDGFMKLLAMT--PIGKETFFINNDKQKMNA 266 N ++ G+ + + + F+ M Sbjct: 197 GLNEGVVRVTGKGSKERLVPFGEVAHGWIERYLRDARPALLGARAADALFVTARGDGMTR 256 Query: 267 TQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 QF K A +A V + S H +R AT + GA + G + + YT Sbjct: 257 QQFWNIIKRHAQQADVRVHLSPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTH 316 Query: 325 GADRIRL 331 A R RL Sbjct: 317 VA-RERL 322 >gi|118579574|ref|YP_900824.1| tyrosine recombinase XerD [Pelobacter propionicus DSM 2379] gi|118502284|gb|ABK98766.1| tyrosine recombinase XerD subunit [Pelobacter propionicus DSM 2379] Length = 295 Score = 138 bits (347), Expect = 1e-30, Method: Composition-based stats. Identities = 50/270 (18%), Positives = 101/270 (37%), Gaps = 24/270 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKH---TPSSAIQFLT 138 LA N+R ++ + + G + ++T I S + + P+S + L+ Sbjct: 16 RGLATNTRQAYSRDLGRYLDFLAERGKNEPAEVTAADIASFLVRLRDEGLAPASRARCLS 75 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRL 194 ++R+ K+ + ++Y NP +E P+ + ++ + S + E + R Sbjct: 76 AIRMFHKFLMIEKYCDDNPSAILEAPRTLHKLPAFLEPAEVDRLFSACAGTSGEDLRDRA 135 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDGFM---------KL 244 E L +GLR S+ ++ + ++ + K V + + Sbjct: 136 MLELLYATGLRVSELVTITLRQVNLDVGYLMVVGKGDKERLVPIGESARGRVRRYIEEAR 195 Query: 245 LAMTPIGK-ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAG 301 + P G+ F++ M+ F + +A A + K S H +R AT + G Sbjct: 196 YRLDPQGRTPHLFLSRLGDAMSRQAFWNLIRKRAKLAAIAKDISPHTLRHSFATHLLENG 255 Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRL 331 A + G + + YT R RL Sbjct: 256 ADLRSVQIMLGHADLSSTQIYTH-VTRERL 284 >gi|304396715|ref|ZP_07378595.1| tyrosine recombinase XerD [Pantoea sp. aB] gi|304355511|gb|EFM19878.1| tyrosine recombinase XerD [Pantoea sp. aB] Length = 297 Score = 138 bits (347), Expect = 1e-30, Method: Composition-based stats. Identities = 48/270 (17%), Positives = 97/270 (35%), Gaps = 24/270 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGD-----FDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139 +LA N+ S+ + + + + + +S+ + L++ Sbjct: 18 RNLAQNTLSSYRQDLQTLTGWLAHHQLTLLSVTPLDLQQFLAERLEGGYKATSSARLLSA 77 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195 MR LF++ R++ +P + PK + ++ +++ + + Sbjct: 78 MRRLFQYLYREKLRPDDPSALLSAPKLPQRLPKDLSEAQVERLLQAPNIDIPLELRDKAM 137 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVEL-------PDGFMKLLAM 247 E L +GLR S+ + + ++ K V L + +M+ Sbjct: 138 LELLYATGLRVSELIGLTLSDISLRQGVVRVIGKGDKERLVPLGEEAVYWLEQYMEHGRP 197 Query: 248 TPIGKETF---FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAG 301 + +T F +N Q+M F K AT AG++ S H +R AT + G Sbjct: 198 WLLNGQTLDVMFPSNRAQQMTRQTFWHRIKHYATLAGIDSEKLSPHVMRHAFATHLLNHG 257 Query: 302 ATAHELMATYGWKTVDQAETYTKGA-DRIR 330 A + G + + YT A +R+R Sbjct: 258 ADLRVVQMLLGHSDLSTTQIYTHVATERLR 287 >gi|332086819|gb|EGI91955.1| tyrosine recombinase XerD [Shigella boydii 5216-82] Length = 298 Score = 138 bits (347), Expect = 1e-30, Method: Composition-based stats. Identities = 43/270 (15%), Positives = 95/270 (35%), Gaps = 24/270 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDY-----RKITTKHIRSGVESRKHTPSSAIQFLTS 139 +LA N+ ++ ++ + + + + + +S+ + L++ Sbjct: 19 KNLAENTLNAYRRDLSMMVEWLHHRGVTLATAQSDDLQALLAERLEGGYKATSSARLLSA 78 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195 +R LF++ R+++ +P + PK + ++ +++ + + Sbjct: 79 VRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLIDQPLELRDKAM 138 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGKET 254 E L +GLR S+ + + ++ K V L + + L Sbjct: 139 LEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVYWLETYLEHGRP 198 Query: 255 FFIN----------NDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAG 301 + +N Q+M F K A AG++ S H +R AT + G Sbjct: 199 WLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHAFATHLLNHG 258 Query: 302 ATAHELMATYGWKTVDQAETYTKGA-DRIR 330 A + G + + YT A +R+R Sbjct: 259 ADLRVVQMLLGHSDLSTTQIYTHVATERLR 288 >gi|324115089|gb|EGC09054.1| tyrosine recombinase XerD [Escherichia fergusonii B253] Length = 298 Score = 138 bits (347), Expect = 1e-30, Method: Composition-based stats. Identities = 43/270 (15%), Positives = 94/270 (34%), Gaps = 24/270 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDY-----RKITTKHIRSGVESRKHTPSSAIQFLTS 139 +LA N+ ++ ++ + + + + + +S+ + L++ Sbjct: 19 KNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGYKATSSARLLSA 78 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195 +R LF++ R+ + +P + PK + ++ +++ + + Sbjct: 79 VRRLFQYLYRENFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLIDQPLELRDKAM 138 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGKET 254 E L +GLR S+ + + ++ K V L + + L Sbjct: 139 LEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVYWLETYLEHGRP 198 Query: 255 FFIN----------NDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAG 301 + +N Q+M F K A AG++ S H +R AT + G Sbjct: 199 WLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHAFATHLLNHG 258 Query: 302 ATAHELMATYGWKTVDQAETYTKGA-DRIR 330 A + G + + YT A +R+R Sbjct: 259 ADLRVVQMLLGHSDLSTTQIYTHVATERLR 288 >gi|284048544|ref|YP_003398883.1| tyrosine recombinase XerD [Acidaminococcus fermentans DSM 20731] gi|283952765|gb|ADB47568.1| tyrosine recombinase XerD [Acidaminococcus fermentans DSM 20731] Length = 301 Score = 138 bits (347), Expect = 1e-30, Method: Composition-based stats. Identities = 48/265 (18%), Positives = 93/265 (35%), Gaps = 22/265 (8%) Query: 86 SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK---HTPSSAIQFLTSMRV 142 LA N+R S+ ++ + + I + + K + P+SA + L +++ Sbjct: 26 GLAYNTRESYGRDL-RLFAGWIKKPLEDVKREDILAYMRMLKVHQYAPTSASRKLAALKA 84 Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAFEF 198 F++ + ++ +P VE R + + E+++Q S EG + R E Sbjct: 85 FFRFMTAEGFLEEDPSEVVEAGTRGVVLPKVMSLEEVKQLFSAPDLTQPEGFRDRTMLEV 144 Query: 199 LLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVEL-----------PDGFMKLLA 246 + +G+R S+ + + I K + L L Sbjct: 145 MYATGMRVSELLSLKRASVNLETRYVIAYGKGAKERLIPLGQYAIQYLKKYLAQVRPLFV 204 Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATA 304 ++ F+ M +F +A KAG+ K + H +R AT D GA Sbjct: 205 KNGKDDDSLFLTIRGTGMTRQRFWQIIRAYGVKAGLQKPLTPHILRHSFATHMLDNGADL 264 Query: 305 HELMATYGWKTVDQAETYTKGADRI 329 + G + + YT + Sbjct: 265 RTVQELLGHADISTTQIYTHLTNNR 289 >gi|157162354|ref|YP_001459672.1| site-specific tyrosine recombinase XerD [Escherichia coli HS] gi|157068034|gb|ABV07289.1| tyrosine recombinase XerD [Escherichia coli HS] Length = 298 Score = 138 bits (347), Expect = 1e-30, Method: Composition-based stats. Identities = 43/270 (15%), Positives = 95/270 (35%), Gaps = 24/270 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDY-----RKITTKHIRSGVESRKHTPSSAIQFLTS 139 +LA N+ ++ ++ + + + + + +S+ + L++ Sbjct: 19 KNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGYKATSSARLLSA 78 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195 +R LF++ R+++ +P + PK + ++ +++ + + Sbjct: 79 VRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLIDQPLELRDKAM 138 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGKET 254 E L +GLR S+ + + ++ K V L + + L Sbjct: 139 LEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVYWLETYLEHGRP 198 Query: 255 FFIN----------NDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAG 301 + +N Q+M F K A AG++ S H +R AT + G Sbjct: 199 WLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHAFATHLLNHG 258 Query: 302 ATAHELMATYGWKTVDQAETYTKGA-DRIR 330 A + G + + YT A +R+R Sbjct: 259 ADLRVVQMLLGHSDLSTTQIYTHVATERLR 288 >gi|323495869|ref|ZP_08100937.1| site-specific tyrosine recombinase XerD [Vibrio sinaloensis DSM 21326] gi|323319085|gb|EGA72028.1| site-specific tyrosine recombinase XerD [Vibrio sinaloensis DSM 21326] Length = 302 Score = 138 bits (347), Expect = 1e-30, Method: Composition-based stats. Identities = 42/265 (15%), Positives = 98/265 (36%), Gaps = 23/265 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITT-----KHIRSGVESRKHTPSSAIQFLTS 139 L+ N+ S+ + ++++ +YR + ++ + + +S + L++ Sbjct: 23 RGLSENTLASYRNDLMKLLQWMSSHNYRLDFISLSGLQEYQTWLVDEGYKQTSRARMLSA 82 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLA 195 +R LF++ R++ A +P + PK + +++ + + + Sbjct: 83 IRRLFQYLHREKRRADDPSALLVSPKLPKRLPKDLSEQQVDALLDAPDPNDPMELRDKAM 142 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLAMTPIGK-- 252 E L +GLR ++ ++++ ++ T K G V + + + + Sbjct: 143 LELLYATGLRVTELVSLTMENISLRQGVVRVTGKGGKERLVPMGENAVDWIETFLQQGRS 202 Query: 253 --------ETFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKFSATISADAG 301 + F + ++M F K A AG++ S H +R AT + G Sbjct: 203 ELLGENTSDVVFPSKRARQMTRQTFWHRIKHYAVIAGIDADKLSPHVLRHAFATHLLNYG 262 Query: 302 ATAHELMATYGWKTVDQAETYTKGA 326 A + G + + YT A Sbjct: 263 ADLRVVQMLLGHSDLSTTQIYTHVA 287 >gi|269959610|ref|ZP_06173991.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269835668|gb|EEZ89746.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 305 Score = 138 bits (347), Expect = 1e-30, Method: Composition-based stats. Identities = 47/278 (16%), Positives = 102/278 (36%), Gaps = 26/278 (9%) Query: 74 LISEYRKSAHW--GSLAVNSRISFESYFDQIIRKSGDFDYRKITT-----KHIRSGVESR 126 L+ ++ A W L+ N+ S+ + +++ YR + +S + Sbjct: 14 LVEQFL-DAMWMERGLSENTLASYRNDLMKLLAWMEQHSYRLDFISLSGLQEYQSYLVDL 72 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF- 185 + +S + L+++R LF++ R++ A +P + PK + ++E + Sbjct: 73 DYKQTSRARMLSAIRRLFQYIHREKVRADDPSALLVSPKLPQRLPKDISEEQVDALLDAP 132 Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGF 241 + + E L +GLR ++ ++++ ++ T K G V + + Sbjct: 133 DPNDPVELRDKAMLELLYATGLRVTELVSLTMENVSLRQGVVRVTGKGGKERLVPMGENA 192 Query: 242 MKLLAMTP----------IGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHG 288 + + + F + ++M F K A AG++ S H Sbjct: 193 VDWIETFIQQGRSALLGETTSDVVFPSKRARQMTRQTFWHRIKYYAVIAGIDTDQLSPHV 252 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 +R AT + GA + G + + YT A Sbjct: 253 LRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVA 290 >gi|197118261|ref|YP_002138688.1| integrase/recombinase XerD [Geobacter bemidjiensis Bem] gi|197087621|gb|ACH38892.1| integrase/recombinase XerD [Geobacter bemidjiensis Bem] Length = 292 Score = 138 bits (347), Expect = 1e-30, Method: Composition-based stats. Identities = 48/267 (17%), Positives = 99/267 (37%), Gaps = 21/267 (7%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH---TPSSAIQFLTSMR 141 A N+ ++ ++ + G+ + I + + K P S + L+++R Sbjct: 16 KGAAANTVSAYSRDLNRYLLFLGEREPDGIRPSDVTGFLAKLKGEGIAPRSRARALSALR 75 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRLAFE 197 +L ++ +R+ Y +NP +E PK + + +++ S ++ + + E Sbjct: 76 MLHRFLLREGYSELNPTAIIEAPKGVRKLPAVLSGREVEALLSSPLDTGAQELRDKAMLE 135 Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG--------FMKLLAMT 248 L +GLR S+ + + + + T K V + + + Sbjct: 136 LLYATGLRVSELVGLKLSEVNLSAGYLMTIGKGDKERLVPMGESACHATGVYLQQARGEL 195 Query: 249 PIGKET--FFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATA 304 K + F++ M+ F K +A +AGV S H +R AT + GA Sbjct: 196 LKEKASTLLFLSRLGGGMSRQAFWNIIKKRALQAGVRTSISPHTLRHSFATHLLENGADL 255 Query: 305 HELMATYGWKTVDQAETYTKGADRIRL 331 + G + + YT R R+ Sbjct: 256 RSVQIMLGHADLSSTQIYTH-VTRERM 281 >gi|146297890|ref|YP_001192481.1| phage integrase family protein [Flavobacterium johnsoniae UW101] gi|146152308|gb|ABQ03162.1| phage integrase family protein [Flavobacterium johnsoniae UW101] Length = 298 Score = 138 bits (347), Expect = 1e-30, Method: Composition-based stats. Identities = 50/279 (17%), Positives = 99/279 (35%), Gaps = 25/279 (8%) Query: 71 LKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSG----DFDYRKITTKHIRSGVES 125 I +Y+ L+ N+ ++ +++ + KIT + I+ + + Sbjct: 3 WNNYIKDYQSYLRIERGLSKNTIENYSFDIERLCLFLETNQIEVSPLKITDETIQQFIYA 62 Query: 126 --RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 ++ P S + ++ ++ F + V ++Y +P +E PK + +++ Sbjct: 63 ISKEVNPRSQARIISGLKSFFSYLVFEDYRNDSPLELIESPKTGRKLPDTLAVKEIDALI 122 Query: 184 SFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELP 238 EG + R E L GLR S+ + L + F T K V + Sbjct: 123 DAIDLSSNEGERNRAILESLYGCGLRVSELVSLKISDLYFDEGFIKITGKGNKERFVPIG 182 Query: 239 -----------DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS-- 285 + L + ++T F+N ++ K A K +NKS Sbjct: 183 KLTQKYIQIYQNEVRVHLNIKKGCEDTLFLNRRGNQLTRAMIFTIIKDLAVKINLNKSIS 242 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R AT + GA + G +++ E Y Sbjct: 243 PHTLRHSFATHLLENGADLRSIQLMLGHESITTTEIYVH 281 >gi|17547263|ref|NP_520665.1| site-specific tyrosine recombinase XerD [Ralstonia solanacearum GMI1000] gi|34222936|sp|Q8XWD0|XERD_RALSO RecName: Full=Tyrosine recombinase xerD gi|17429565|emb|CAD16251.1| probable integrase/recombinase protein [Ralstonia solanacearum GMI1000] Length = 308 Score = 138 bits (347), Expect = 1e-30, Method: Composition-based stats. Identities = 51/306 (16%), Positives = 93/306 (30%), Gaps = 38/306 (12%) Query: 54 STPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI----------I 103 + E + P ++ LA N+ ++ + Sbjct: 2 TQAAPETLPLPPSSTEAIQRFCDALWLED---GLARNTLDAYRRDLTLYAQWLAGRGKAL 58 Query: 104 RKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER 163 ++ D D + S+A + T + F+WA+R+ V+ +P + Sbjct: 59 DQTEDVDLSDYFAARHEDSL------ASTANRRRTVFKRFFQWALREHLVSADPTRLLST 112 Query: 164 PKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN 219 K+ + ++ ++ + G + R E + SGLR S+ + Sbjct: 113 AKQPPRVPKTLSEAQVEALIAAPDVDAPLGLRDRAMIELMYASGLRVSEIVALKTVEVGL 172 Query: 220 NIFSIKT--QKTGTIITVELPDGFMKLLAMTPIGKET----------FFINNDKQKMNAT 267 N ++ K G V L T F+ M Sbjct: 173 NEGVVRVIGGKGGKDRLVPFGAEAGDWLRRYLRDGRTALLGERTADALFVTARGDGMTRQ 232 Query: 268 QFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 F K A +A ++ S H +R AT + GA + G + + YT Sbjct: 233 AFWYLIKRYAQRADIHAPLSPHTLRHAFATHLLNHGADLRVVQMLLGHADISTTQIYTHV 292 Query: 326 ADRIRL 331 A R RL Sbjct: 293 A-RERL 297 >gi|66046081|ref|YP_235922.1| Phage integrase:Phage integrase, N-terminal SAM-like [Pseudomonas syringae pv. syringae B728a] gi|63256788|gb|AAY37884.1| Phage integrase:Phage integrase, N-terminal SAM-like [Pseudomonas syringae pv. syringae B728a] Length = 344 Score = 138 bits (347), Expect = 1e-30, Method: Composition-based stats. Identities = 59/332 (17%), Positives = 119/332 (35%), Gaps = 28/332 (8%) Query: 11 VTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSAL--TGSTPKREYINSPRKKP 68 + K + R G + YY+ G R +P + Y A+ K ++ ++ Sbjct: 14 LRKRKQRSGVVYYYYDIGGSPRKEIPLGSD------YGMAIVEYAKLEKSRTSSALVQQV 67 Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESR 126 T ++ +Y + + ++ Q+++ D I +H+ + R Sbjct: 68 LTFAYVAEKYMIEVV-PTKSPATQKDNARELKQLLKFFDDPPAPLEAIEPQHVVQYLRQR 126 Query: 127 KHT-PSSAIQFLTSMRVLFKWAVRQEYVA-INPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 T P A + + ++ +A+ Y A NPC V+ K + + F Sbjct: 127 GKTAPVRANREKALLSAIWNFAMSAGYTALANPCAGVKGHKEVGRDHYI----EDEMFAL 182 Query: 185 FWSEGSQP-RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243 +S QP R A + +G R +D+ + + +++ ++ KT +E+ Sbjct: 183 VYSHAEQPLRDALDLFYLTGQRIADTLKMDERDIRDGRLWVQQGKTNAKRRIEITGELKV 242 Query: 244 LLAMTPIGKE-------TFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKFS 293 ++ KE + ++ Q M ++ F A AGV K +R + Sbjct: 243 VIDRIMTRKEGHRIRTSRLIVMDNGQPMTSSMLRERFDAAREAAGVEKGEFQMRDLRAKA 302 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKG 325 T A++ + G TV E Y + Sbjct: 303 GTDKAESSGDILQARDQLGHTTVVMTENYIRK 334 >gi|15601958|ref|NP_245030.1| site-specific tyrosine recombinase XerD [Pasteurella multocida subsp. multocida str. Pm70] gi|31563286|sp|Q9CPF0|XERD_PASMU RecName: Full=Tyrosine recombinase xerD gi|12720303|gb|AAK02177.1| XerD [Pasteurella multocida subsp. multocida str. Pm70] Length = 297 Score = 138 bits (347), Expect = 1e-30, Method: Composition-based stats. Identities = 46/285 (16%), Positives = 99/285 (34%), Gaps = 27/285 (9%) Query: 72 KWLISEYRKSAHW--GSLAVNSRISFESYFDQIIRKSGD-----FDYRKITTKHIRSGVE 124 LI + W L+ N+ S+ +I+ + I + Sbjct: 4 SALIELFLNEI-WIEKQLSQNTIASYRLDLTALIQWLEKQQLTLINLDAIDLQTFLGERL 62 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 ++ + +S + L++MR LF++ R++Y +P + PK + + T++ + + Sbjct: 63 NQGYKATSTARLLSAMRKLFQYLYREKYRTDDPSAVLSSPKLPSRLPKYLTEQQVTDLLN 122 Query: 185 F----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPD 239 + + E L +GLR ++ ++++ N ++ G V + + Sbjct: 123 SPDVDIPLELRDKAMMELLYATGLRVTELVSLTIENININQGIVRVVGKGNKERIVPIGE 182 Query: 240 GFMKLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSA 286 + + F + +M F K A + ++ S Sbjct: 183 EATYWIRQFMLYGRPFLLHGQSSDVVFPSKRALQMTRQTFWHRIKHYALLSDIDINSLSP 242 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 H +R AT + GA + G + + YT A + RL Sbjct: 243 HVLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVA-KERL 286 >gi|300088077|ref|YP_003758599.1| tyrosine recombinase XerD [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299527810|gb|ADJ26278.1| tyrosine recombinase XerD [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 303 Score = 138 bits (347), Expect = 1e-30, Method: Composition-based stats. Identities = 44/282 (15%), Positives = 102/282 (36%), Gaps = 30/282 (10%) Query: 85 GSLAVNSRISFESYFDQI-------IRKSGDFDY-RKITTKHIRSGVESRKHT---PSSA 133 + N+R ++ + Q+ +R+ GD D + + S + K ++ Sbjct: 16 KGFSGNTRDAYHNDLYQLADFSTRCLRQRGDQDLWDNFNRQDMLSYLLDLKERNYAVTTV 75 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-----SE 188 ++ L + + F + + + + NP ++E PK + + ++ E Sbjct: 76 VRKLAAAKSFFSFLLEENKIRQNPTDNIESPKVGKPLPDAISVQQVKALLEQPTLAGGPE 135 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLA- 246 + R E L SG+R S+ + + + ++ K + + ++++ Sbjct: 136 AKRDRAMLELLYASGMRVSELIGLDLADVDCDEEQVRCFGKGNKERIIPIHPQAARIVSE 195 Query: 247 ---------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSAT 295 + ++ F+N +++ K A AG+N + H +R AT Sbjct: 196 YIEEVRPRLVRSNDEKALFLNRRGERLTRQGLWQILKEYAVAAGLNGQVTPHTLRHSFAT 255 Query: 296 ISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNS 336 + GA + G + + YT +D IR ++ Sbjct: 256 HMLNGGADLRSVQELLGHANISTTQIYTHLTSDHIRRAYDSA 297 >gi|227112633|ref|ZP_03826289.1| site-specific tyrosine recombinase XerD [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 299 Score = 138 bits (347), Expect = 1e-30, Method: Composition-based stats. Identities = 45/280 (16%), Positives = 96/280 (34%), Gaps = 26/280 (9%) Query: 72 KWLISEYRKSAHW--GSLAVNSRISFESYFDQIIRKSGDFD-----YRKITTKHIRSGVE 124 + LI ++ A W +LA N+ S+ + D + + + + Sbjct: 6 QALIEQFL-DALWLERNLAENTLASYRLDLRTLAEWLAHHDNDLLQAQSLDLQAFLADRV 64 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 + +S+ + L++MR F++ R++ + +P + PK + ++ + + Sbjct: 65 EGGYKATSSARLLSAMRRFFQYLYREKCRSDDPSAVLSSPKLPQRLPKDLSEAQVDTLLN 124 Query: 185 F----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPD 239 + + E L +GLR S+ + + ++ K V L + Sbjct: 125 APSIEQPLELRDKAMLEVLYATGLRVSELVSLTMSDVSLRQGVVRVLGKGNKERLVPLGE 184 Query: 240 GFMKLLAMTPIGKETFFIN----------NDKQKMNATQFSIWFKAKATKAGVN---KSA 286 + + + +N N ++M F K A A ++ S Sbjct: 185 EAVYWIEYYLEHGRPWLLNGQTLDVLFPSNRARQMTRQTFWHRIKHYAVLASIDSEKLSP 244 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 H +R AT + GA + G + + YT A Sbjct: 245 HVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA 284 >gi|218258194|ref|ZP_03474596.1| hypothetical protein PRABACTJOHN_00250 [Parabacteroides johnsonii DSM 18315] gi|218225689|gb|EEC98339.1| hypothetical protein PRABACTJOHN_00250 [Parabacteroides johnsonii DSM 18315] Length = 301 Score = 138 bits (347), Expect = 2e-30, Method: Composition-based stats. Identities = 48/275 (17%), Positives = 97/275 (35%), Gaps = 27/275 (9%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQII-------RKSGDFDYRKITTKHIRSGVESR 126 + Y+ +L+ NS ++ + D++ +K D Y + + + Sbjct: 8 VERYKTYLRLEKALSANSIDAYLTDLDKLTNFVESEGKKYADVTYDDLQQ--FVARLHDI 65 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF- 185 P S + ++ ++ +++ Y+ +P +E PK + T ++ Sbjct: 66 GIHPRSQARIISGIKSFYRFLFLDNYITTDPTELLESPKIGLKLPEVLTVNEINSILDTI 125 Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT-VELPDGF 241 EG + R E L GLR S+ + + IK + G+ V + + Sbjct: 126 DLTLPEGQRNRAMLEVLYSCGLRVSELVSLRFTDVYFDEGFIKVEGKGSKQRLVPISETA 185 Query: 242 MKLLA-------MTPIGK---ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289 +K + P+ K + F++ ++ K + AG+ K S H Sbjct: 186 IKEIKNYLYDRNHVPVKKGFEDILFLSRRGTALSRIMVFHIIKQQTEMAGIKKNVSPHTF 245 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 R AT + GA + G + + E YT Sbjct: 246 RHSFATHLLEGGANLLAIQEMLGHEKITTTEIYTH 280 >gi|312972864|ref|ZP_07787037.1| tyrosine recombinase XerD [Escherichia coli 1827-70] gi|310332806|gb|EFQ00020.1| tyrosine recombinase XerD [Escherichia coli 1827-70] Length = 283 Score = 138 bits (347), Expect = 2e-30, Method: Composition-based stats. Identities = 43/270 (15%), Positives = 95/270 (35%), Gaps = 24/270 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDY-----RKITTKHIRSGVESRKHTPSSAIQFLTS 139 +LA N+ ++ ++ + + + + + +S+ + L++ Sbjct: 4 KNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGYKATSSARLLSA 63 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195 +R LF++ R+++ +P + PK + ++ +++ + + Sbjct: 64 VRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLIDQPLELRDKAM 123 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGKET 254 E L +GLR S+ + + ++ K V L + + L Sbjct: 124 LEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVYWLETYLEHGRP 183 Query: 255 FFIN----------NDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAG 301 + +N Q+M F K A AG++ S H +R AT + G Sbjct: 184 WLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHAFATHLLNHG 243 Query: 302 ATAHELMATYGWKTVDQAETYTKGA-DRIR 330 A + G + + YT A +R+R Sbjct: 244 ADLRVVQMLLGHSDLSTTQIYTHVATERLR 273 >gi|169350427|ref|ZP_02867365.1| hypothetical protein CLOSPI_01195 [Clostridium spiroforme DSM 1552] gi|169292747|gb|EDS74880.1| hypothetical protein CLOSPI_01195 [Clostridium spiroforme DSM 1552] Length = 298 Score = 138 bits (347), Expect = 2e-30, Method: Composition-based stats. Identities = 53/281 (18%), Positives = 94/281 (33%), Gaps = 29/281 (10%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQI--------IRKSGDFDYRKITTKHIRS 121 L LI+EY + + + N+ S+ I D DY + + + Sbjct: 3 LDKLINEYLDCLKYERNYSNNTIASYRREIMHFKVYLVQEGISDYNDVDY--LMLRGYLT 60 Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM-- 179 + + SS L+++R F + +++E++ NP +E K +E+M Sbjct: 61 KLYDKNLAKSSINHRLSALRSFFDYLLKEEFIKDNPFKLIESQKVGQRNPDFLFQEEMID 120 Query: 180 --QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVE 236 ++ G + + E + SGLRCS+ + + N + + K G V Sbjct: 121 LLDSIETKDDLGIRNKAMLELMYASGLRCSEVANLQISDIDFNQMVVLVHGKGGKDRYVP 180 Query: 237 LP-----------DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK--AGVN 283 D L + G F+N + K A Sbjct: 181 FHEYARDWLVKYIDEARNNLMIKNAGHNFIFVNKLGNPLTNRGIENIVDRVTFKYDATKK 240 Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R AT +AGA + G K + + YT Sbjct: 241 IHPHTIRHSFATHLLNAGADIRTVQELLGHKNLATTQVYTH 281 >gi|156932654|ref|YP_001436570.1| site-specific tyrosine recombinase XerD [Cronobacter sakazakii ATCC BAA-894] gi|156530908|gb|ABU75734.1| hypothetical protein ESA_00437 [Cronobacter sakazakii ATCC BAA-894] Length = 319 Score = 138 bits (347), Expect = 2e-30, Method: Composition-based stats. Identities = 45/270 (16%), Positives = 96/270 (35%), Gaps = 24/270 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESR---KHTPSSAIQFLTS 139 +LA NS ++ ++ + + +++ + R + +S + L++ Sbjct: 40 RNLAENSLSAYRRDLSMVVEWLHHRGLSLATVQSGDLQTLLAERVEGGYKATSTARMLSA 99 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195 +R LF+ R++ +P + PK + ++ +++ + + Sbjct: 100 VRRLFQHLYREKIRDDDPSALLASPKLPQRLPKDLSEAQVERLLQAPTVEEPIELRDKAM 159 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGKET 254 E L +GLR S+ + + ++ K V L + + L Sbjct: 160 LEVLYATGLRVSELVGLTMSDVSLRQGVVRVIGKGNKERLVPLGEEAVYWLEQYLTHGRP 219 Query: 255 FFIN----------NDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAG 301 + +N N ++M F K A AG++ S H +R AT + G Sbjct: 220 WLLNGQSLDILFPSNRARQMTRQTFWHRIKHYAQLAGIDSEKLSPHVLRHAFATHLLNHG 279 Query: 302 ATAHELMATYGWKTVDQAETYTKGA-DRIR 330 A + G + + YT A +R+R Sbjct: 280 ADLRVVQMLLGHSDLSTTQIYTHVATERLR 309 >gi|317132368|ref|YP_004091682.1| integrase family protein [Ethanoligenens harbinense YUAN-3] gi|315470347|gb|ADU26951.1| integrase family protein [Ethanoligenens harbinense YUAN-3] Length = 294 Score = 137 bits (346), Expect = 2e-30, Method: Composition-based stats. Identities = 47/280 (16%), Positives = 107/280 (38%), Gaps = 27/280 (9%) Query: 76 SEYRKSAHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKHTPSS 132 S Y + S++ ++ S++ Q ++ G+ D +T + ++ + S Sbjct: 9 SAYLRDQ--KSVSASTLQSYQRDLKQFVQYLQQRGNEDPADVTAAELEMYLDVLRGKGRS 66 Query: 133 ---AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS-- 187 +F S+R F++ + + ++ NP L + + K T ++ + Sbjct: 67 EATISRFTASVRGFFQYLLLEGIISENPALLLHVERGKRCLPDILTSGEVDLLFAQPVCN 126 Query: 188 --EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL-------- 237 +G + + E L +G+R S+ V + + ++ + ++ + Sbjct: 127 DFKGYRDKAMLELLYATGIRVSELIALDVGDINLGLCTLFCRGPEKNRSIPIYNEAVQSI 186 Query: 238 ---PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKF 292 D L M G++ F+N ++++ F K+ A +AG+ K + H +R Sbjct: 187 SLYLDNARSTLRMLH-GEKALFVNAGGRRLSRQGFWKIVKSYAGQAGIQKRITPHTLRHS 245 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRL 331 A + GA + G + + Y + +R RL Sbjct: 246 FAAHLLENGADLKSIQEMLGHSDISSTQIYEQIVQNRCRL 285 >gi|288933626|ref|YP_003437685.1| tyrosine recombinase XerD [Klebsiella variicola At-22] gi|288888355|gb|ADC56673.1| tyrosine recombinase XerD [Klebsiella variicola At-22] Length = 298 Score = 137 bits (346), Expect = 2e-30, Method: Composition-based stats. Identities = 41/270 (15%), Positives = 96/270 (35%), Gaps = 24/270 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESR---KHTPSSAIQFLTS 139 +LA N+ ++ ++ + + +++ + R + +S + +++ Sbjct: 19 RNLAENTLSAYRRDLTMLVEWLHHRGLSLASVGSDDLQALLAERQTGGYKATSTARLISA 78 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195 +R F+ R++ +P + PK + ++ +++ + + Sbjct: 79 VRRFFQHLYREKIRPDDPSALLASPKLPQRLPKDLSEAQVERLLQAPLVEQPLELRDKAM 138 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLA-------- 246 E L +GLR S+ + + ++ K V L + + + Sbjct: 139 LEVLYATGLRVSELVGLTMSDISLRQGVLRVIGKGNKERLVPLGEEAVMWVENYLEYGRP 198 Query: 247 --MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAG 301 + + + F + Q+M F K A AG++ S H +R AT + G Sbjct: 199 WLLNGVASDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSAKLSPHVLRHAFATHLLNHG 258 Query: 302 ATAHELMATYGWKTVDQAETYTKGA-DRIR 330 A + G + + YT A +R+R Sbjct: 259 ADLRVVQMLLGHSDLSTTQIYTHVATERLR 288 >gi|24114148|ref|NP_708658.1| site-specific tyrosine recombinase XerD [Shigella flexneri 2a str. 301] gi|30064206|ref|NP_838377.1| site-specific tyrosine recombinase XerD [Shigella flexneri 2a str. 2457T] gi|91212272|ref|YP_542258.1| site-specific tyrosine recombinase XerD [Escherichia coli UTI89] gi|218559887|ref|YP_002392800.1| site-specific tyrosine recombinase XerD [Escherichia coli S88] gi|237706462|ref|ZP_04536943.1| tyrosine recombinase xerD [Escherichia sp. 3_2_53FAA] gi|34222799|sp|Q7ZAM0|XERD_SHIFL RecName: Full=Tyrosine recombinase xerD gi|24053288|gb|AAN44365.1| site-specific recombinase [Shigella flexneri 2a str. 301] gi|30042463|gb|AAP18187.1| site-specific recombinase [Shigella flexneri 2a str. 2457T] gi|91073846|gb|ABE08727.1| site-specific recombinase [Escherichia coli UTI89] gi|218366656|emb|CAR04410.1| site-specific tyrosine recombinase [Escherichia coli S88] gi|226899502|gb|EEH85761.1| tyrosine recombinase xerD [Escherichia sp. 3_2_53FAA] gi|294492679|gb|ADE91435.1| tyrosine recombinase XerD [Escherichia coli IHE3034] gi|307625533|gb|ADN69837.1| site-specific tyrosine recombinase XerD [Escherichia coli UM146] gi|313647934|gb|EFS12380.1| tyrosine recombinase XerD [Shigella flexneri 2a str. 2457T] gi|315289443|gb|EFU48838.1| tyrosine recombinase XerD [Escherichia coli MS 110-3] gi|323951667|gb|EGB47542.1| tyrosine recombinase XerD [Escherichia coli H252] gi|323957385|gb|EGB53107.1| tyrosine recombinase XerD [Escherichia coli H263] Length = 298 Score = 137 bits (346), Expect = 2e-30, Method: Composition-based stats. Identities = 43/270 (15%), Positives = 95/270 (35%), Gaps = 24/270 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDY-----RKITTKHIRSGVESRKHTPSSAIQFLTS 139 +LA N+ ++ ++ + + + + + +S+ + L++ Sbjct: 19 KNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGYKATSSARLLSA 78 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195 +R LF++ R+++ +P + PK + ++ +++ + + Sbjct: 79 VRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLIDQPLELRDKAM 138 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGKET 254 E L +GLR S+ + + ++ K V L + + L Sbjct: 139 LEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVYWLETYLEHGRP 198 Query: 255 FFIN----------NDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAG 301 + +N Q+M F K A AG++ S H +R AT + G Sbjct: 199 WLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHAFATHLLNHG 258 Query: 302 ATAHELMATYGWKTVDQAETYTKGA-DRIR 330 A + G + + YT A +R+R Sbjct: 259 ADLRVVQMLLGHSDLSTTQIYTHVATERLR 288 >gi|116625461|ref|YP_827617.1| tyrosine recombinase XerD subunit [Candidatus Solibacter usitatus Ellin6076] gi|116228623|gb|ABJ87332.1| tyrosine recombinase XerD subunit [Candidatus Solibacter usitatus Ellin6076] Length = 302 Score = 137 bits (346), Expect = 2e-30, Method: Composition-based stats. Identities = 49/266 (18%), Positives = 93/266 (34%), Gaps = 20/266 (7%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRKHTPSSAIQFLTSMRV 142 L+ NS ++ + + ++ +GD + + + S + LT++R Sbjct: 27 KGLSPNSISAYSADLARFVQFTGDVQEPPGVPEIRQYIDHLYQTGLSNRSVGRHLTTLRN 86 Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRLAFEF 198 + + +R+ VA +P + P++ + E++++ G + R E Sbjct: 87 FYGFLLREGKVATDPTEHLRTPRQWQTIPKYLNLEEIERIIQAPDLAKPLGLRDRAMMEV 146 Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFMKLLAM---------- 247 L SGLR S+ C+ G+ L ++T G V + + + Sbjct: 147 LYASGLRVSELCKLGIGDLDLEYQVLRTTGKGNKQRLVPVGKAAVLAVRAYLESGRPGLL 206 Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAH 305 F+ M F A KAG+ + H +R AT + GA Sbjct: 207 KGRASRYLFVTARGGCMTRQGFWKLLAAYGRKAGIFHGLTPHVLRHSFATHLLEGGADLR 266 Query: 306 ELMATYGWKTVDQAETYTKGADRIRL 331 + G + + YT R RL Sbjct: 267 SVQVMLGHADISTTQIYTH-VMRSRL 291 >gi|16130796|ref|NP_417370.1| site-specific tyrosine recombinase [Escherichia coli str. K-12 substr. MG1655] gi|26249309|ref|NP_755349.1| site-specific tyrosine recombinase XerD [Escherichia coli CFT073] gi|74313452|ref|YP_311871.1| site-specific tyrosine recombinase XerD [Shigella sonnei Ss046] gi|82545483|ref|YP_409430.1| site-specific tyrosine recombinase XerD [Shigella boydii Sb227] gi|82778340|ref|YP_404689.1| site-specific tyrosine recombinase XerD [Shigella dysenteriae Sd197] gi|89109673|ref|AP_003453.1| site-specific tyrosine recombinase [Escherichia coli str. K-12 substr. W3110] gi|110643042|ref|YP_670772.1| site-specific tyrosine recombinase XerD [Escherichia coli 536] gi|110806797|ref|YP_690317.1| site-specific tyrosine recombinase XerD [Shigella flexneri 5 str. 8401] gi|157158312|ref|YP_001464231.1| site-specific tyrosine recombinase XerD [Escherichia coli E24377A] gi|168747627|ref|ZP_02772649.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4113] gi|168753832|ref|ZP_02778839.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4401] gi|168766887|ref|ZP_02791894.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4486] gi|168775771|ref|ZP_02800778.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4196] gi|168778907|ref|ZP_02803914.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4076] gi|168785740|ref|ZP_02810747.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC869] gi|168800027|ref|ZP_02825034.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC508] gi|170082455|ref|YP_001731775.1| site-specific tyrosine recombinase [Escherichia coli str. K-12 substr. DH10B] gi|170681991|ref|YP_001745047.1| site-specific tyrosine recombinase XerD [Escherichia coli SMS-3-5] gi|187732006|ref|YP_001881663.1| site-specific tyrosine recombinase XerD [Shigella boydii CDC 3083-94] gi|188496120|ref|ZP_03003390.1| tyrosine recombinase XerD [Escherichia coli 53638] gi|191166010|ref|ZP_03027846.1| tyrosine recombinase XerD [Escherichia coli B7A] gi|191173237|ref|ZP_03034768.1| tyrosine recombinase XerD [Escherichia coli F11] gi|193063471|ref|ZP_03044560.1| tyrosine recombinase XerD [Escherichia coli E22] gi|193070556|ref|ZP_03051495.1| tyrosine recombinase XerD [Escherichia coli E110019] gi|194426297|ref|ZP_03058852.1| tyrosine recombinase XerD [Escherichia coli B171] gi|194431675|ref|ZP_03063966.1| tyrosine recombinase XerD [Shigella dysenteriae 1012] gi|194436800|ref|ZP_03068900.1| tyrosine recombinase XerD [Escherichia coli 101-1] gi|195936512|ref|ZP_03081894.1| site-specific tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4024] gi|208806438|ref|ZP_03248775.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4206] gi|208814608|ref|ZP_03255937.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4045] gi|208820065|ref|ZP_03260385.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4042] gi|209398903|ref|YP_002272368.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4115] gi|209920348|ref|YP_002294432.1| site-specific tyrosine recombinase XerD [Escherichia coli SE11] gi|215488194|ref|YP_002330625.1| site-specific tyrosine recombinase XerD [Escherichia coli O127:H6 str. E2348/69] gi|218555442|ref|YP_002388355.1| site-specific tyrosine recombinase XerD [Escherichia coli IAI1] gi|218691019|ref|YP_002399231.1| site-specific tyrosine recombinase XerD [Escherichia coli ED1a] gi|218696489|ref|YP_002404156.1| site-specific tyrosine recombinase XerD [Escherichia coli 55989] gi|227888443|ref|ZP_04006248.1| site-specific tyrosine recombinase [Escherichia coli 83972] gi|238902019|ref|YP_002927815.1| site-specific tyrosine recombinase [Escherichia coli BW2952] gi|253772265|ref|YP_003035096.1| site-specific tyrosine recombinase XerD [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254162806|ref|YP_003045914.1| site-specific tyrosine recombinase XerD [Escherichia coli B str. REL606] gi|254794844|ref|YP_003079681.1| site-specific tyrosine recombinase XerD [Escherichia coli O157:H7 str. TW14359] gi|256019308|ref|ZP_05433173.1| site-specific tyrosine recombinase XerD [Shigella sp. D9] gi|256024596|ref|ZP_05438461.1| site-specific tyrosine recombinase XerD [Escherichia sp. 4_1_40B] gi|260845562|ref|YP_003223340.1| site-specific tyrosine recombinase XerD [Escherichia coli O103:H2 str. 12009] gi|260857017|ref|YP_003230908.1| site-specific tyrosine recombinase XerD [Escherichia coli O26:H11 str. 11368] gi|260869571|ref|YP_003235973.1| site-specific tyrosine recombinase XerD [Escherichia coli O111:H- str. 11128] gi|261226207|ref|ZP_05940488.1| site-specific tyrosine recombinase [Escherichia coli O157:H7 str. FRIK2000] gi|261256538|ref|ZP_05949071.1| site-specific tyrosine recombinase XerD [Escherichia coli O157:H7 str. FRIK966] gi|291284213|ref|YP_003501031.1| Tyrosine recombinase xerD [Escherichia coli O55:H7 str. CB9615] gi|293412253|ref|ZP_06654976.1| tyrosine recombinase XerD [Escherichia coli B354] gi|293416147|ref|ZP_06658787.1| tyrosine recombinase XerD [Escherichia coli B185] gi|293449216|ref|ZP_06663637.1| tyrosine recombinase XerD [Escherichia coli B088] gi|297521422|ref|ZP_06939808.1| site-specific tyrosine recombinase XerD [Escherichia coli OP50] gi|300815654|ref|ZP_07095878.1| tyrosine recombinase XerD [Escherichia coli MS 107-1] gi|300820698|ref|ZP_07100849.1| tyrosine recombinase XerD [Escherichia coli MS 119-7] gi|300906556|ref|ZP_07124247.1| tyrosine recombinase XerD [Escherichia coli MS 84-1] gi|300921226|ref|ZP_07137599.1| tyrosine recombinase XerD [Escherichia coli MS 115-1] gi|300925125|ref|ZP_07141039.1| tyrosine recombinase XerD [Escherichia coli MS 182-1] gi|300928170|ref|ZP_07143712.1| tyrosine recombinase XerD [Escherichia coli MS 187-1] gi|300936040|ref|ZP_07150988.1| tyrosine recombinase XerD [Escherichia coli MS 21-1] gi|300947617|ref|ZP_07161788.1| tyrosine recombinase XerD [Escherichia coli MS 116-1] gi|300954266|ref|ZP_07166729.1| tyrosine recombinase XerD [Escherichia coli MS 175-1] gi|300980312|ref|ZP_07174966.1| tyrosine recombinase XerD [Escherichia coli MS 45-1] gi|300995674|ref|ZP_07181202.1| tyrosine recombinase XerD [Escherichia coli MS 200-1] gi|301027808|ref|ZP_07191113.1| tyrosine recombinase XerD [Escherichia coli MS 196-1] gi|301049322|ref|ZP_07196292.1| tyrosine recombinase XerD [Escherichia coli MS 185-1] gi|301303052|ref|ZP_07209179.1| tyrosine recombinase XerD [Escherichia coli MS 124-1] gi|301327295|ref|ZP_07220551.1| tyrosine recombinase XerD [Escherichia coli MS 78-1] gi|301643756|ref|ZP_07243794.1| tyrosine recombinase XerD [Escherichia coli MS 146-1] gi|307139581|ref|ZP_07498937.1| site-specific tyrosine recombinase XerD [Escherichia coli H736] gi|307310487|ref|ZP_07590135.1| tyrosine recombinase XerD [Escherichia coli W] gi|309785299|ref|ZP_07679930.1| tyrosine recombinase XerD [Shigella dysenteriae 1617] gi|312964846|ref|ZP_07779086.1| tyrosine recombinase XerD [Escherichia coli 2362-75] gi|331643584|ref|ZP_08344715.1| tyrosine recombinase XerD [Escherichia coli H736] gi|331648640|ref|ZP_08349728.1| tyrosine recombinase XerD [Escherichia coli M605] gi|331659024|ref|ZP_08359966.1| tyrosine recombinase XerD [Escherichia coli TA206] gi|331664467|ref|ZP_08365373.1| tyrosine recombinase XerD [Escherichia coli TA143] gi|331669629|ref|ZP_08370475.1| tyrosine recombinase XerD [Escherichia coli TA271] gi|331674379|ref|ZP_08375139.1| tyrosine recombinase XerD [Escherichia coli TA280] gi|331678881|ref|ZP_08379555.1| tyrosine recombinase XerD [Escherichia coli H591] gi|331684520|ref|ZP_08385112.1| tyrosine recombinase XerD [Escherichia coli H299] gi|67475548|sp|P0A8P8|XERD_ECOLI RecName: Full=Tyrosine recombinase xerD gi|67475549|sp|P0A8P9|XERD_ECOL6 RecName: Full=Tyrosine recombinase xerD gi|26109717|gb|AAN81922.1|AE016766_10 Integrase/recombinase xerD [Escherichia coli CFT073] gi|147548|gb|AAA62787.1| xprB [Escherichia coli] gi|887844|gb|AAA83075.1| site-specific integrase/recombinase, with xerC [Escherichia coli] gi|1789261|gb|AAC75932.1| site-specific tyrosine recombinase [Escherichia coli str. K-12 substr. MG1655] gi|73856929|gb|AAZ89636.1| site-specific recombinase [Shigella sonnei Ss046] gi|81242488|gb|ABB63198.1| site-specific recombinase [Shigella dysenteriae Sd197] gi|81246894|gb|ABB67602.1| site-specific recombinase [Shigella boydii Sb227] gi|85675706|dbj|BAE76959.1| site-specific tyrosine recombinase [Escherichia coli str. K12 substr. W3110] gi|110344634|gb|ABG70871.1| integrase/recombinase XerD [Escherichia coli 536] gi|110616345|gb|ABF05012.1| site-specific recombinase [Shigella flexneri 5 str. 8401] gi|157080342|gb|ABV20050.1| tyrosine recombinase XerD [Escherichia coli E24377A] gi|169890290|gb|ACB03997.1| site-specific tyrosine recombinase [Escherichia coli str. K-12 substr. DH10B] gi|170519709|gb|ACB17887.1| tyrosine recombinase XerD [Escherichia coli SMS-3-5] gi|187428998|gb|ACD08272.1| tyrosine recombinase XerD [Shigella boydii CDC 3083-94] gi|187768812|gb|EDU32656.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4196] gi|188017752|gb|EDU55874.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4113] gi|188491319|gb|EDU66422.1| tyrosine recombinase XerD [Escherichia coli 53638] gi|189003626|gb|EDU72612.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4076] gi|189358670|gb|EDU77089.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4401] gi|189363773|gb|EDU82192.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4486] gi|189373936|gb|EDU92352.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC869] gi|189377626|gb|EDU96042.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC508] gi|190903958|gb|EDV63671.1| tyrosine recombinase XerD [Escherichia coli B7A] gi|190906488|gb|EDV66096.1| tyrosine recombinase XerD [Escherichia coli F11] gi|192930748|gb|EDV83353.1| tyrosine recombinase XerD [Escherichia coli E22] gi|192956139|gb|EDV86603.1| tyrosine recombinase XerD [Escherichia coli E110019] gi|194415605|gb|EDX31872.1| tyrosine recombinase XerD [Escherichia coli B171] gi|194420031|gb|EDX36109.1| tyrosine recombinase XerD [Shigella dysenteriae 1012] gi|194424282|gb|EDX40269.1| tyrosine recombinase XerD [Escherichia coli 101-1] gi|208726239|gb|EDZ75840.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4206] gi|208735885|gb|EDZ84572.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4045] gi|208740188|gb|EDZ87870.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4042] gi|209160303|gb|ACI37736.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4115] gi|209760578|gb|ACI78601.1| site-specific recombinase [Escherichia coli] gi|209760582|gb|ACI78603.1| site-specific recombinase [Escherichia coli] gi|209760584|gb|ACI78604.1| site-specific recombinase [Escherichia coli] gi|209760586|gb|ACI78605.1| site-specific recombinase [Escherichia coli] gi|209913607|dbj|BAG78681.1| site-specific recombinase [Escherichia coli SE11] gi|215266266|emb|CAS10695.1| site-specific tyrosine recombinase [Escherichia coli O127:H6 str. E2348/69] gi|218353221|emb|CAU99139.1| site-specific tyrosine recombinase [Escherichia coli 55989] gi|218362210|emb|CAQ99828.1| site-specific tyrosine recombinase [Escherichia coli IAI1] gi|218428583|emb|CAR09510.2| site-specific tyrosine recombinase [Escherichia coli ED1a] gi|222034589|emb|CAP77331.1| Tyrosine recombinase xerD [Escherichia coli LF82] gi|227834712|gb|EEJ45178.1| site-specific tyrosine recombinase [Escherichia coli 83972] gi|238863557|gb|ACR65555.1| site-specific tyrosine recombinase [Escherichia coli BW2952] gi|242378425|emb|CAQ33206.1| site-specific recombinase, subunit of Xer site-specific recombination system [Escherichia coli BL21(DE3)] gi|253323309|gb|ACT27911.1| tyrosine recombinase XerD [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253974707|gb|ACT40378.1| site-specific tyrosine recombinase XerD [Escherichia coli B str. REL606] gi|253978873|gb|ACT44543.1| site-specific tyrosine recombinase XerD [Escherichia coli BL21(DE3)] gi|254594244|gb|ACT73605.1| site-specific tyrosine recombinase [Escherichia coli O157:H7 str. TW14359] gi|257755666|dbj|BAI27168.1| site-specific tyrosine recombinase XerD [Escherichia coli O26:H11 str. 11368] gi|257760709|dbj|BAI32206.1| site-specific tyrosine recombinase XerD [Escherichia coli O103:H2 str. 12009] gi|257765927|dbj|BAI37422.1| site-specific tyrosine recombinase XerD [Escherichia coli O111:H- str. 11128] gi|260448060|gb|ACX38482.1| tyrosine recombinase XerD [Escherichia coli DH1] gi|281179899|dbj|BAI56229.1| site-specific recombinase [Escherichia coli SE15] gi|284922842|emb|CBG35931.1| tyrosine recombinase [Escherichia coli 042] gi|290764086|gb|ADD58047.1| Tyrosine recombinase xerD [Escherichia coli O55:H7 str. CB9615] gi|291322306|gb|EFE61735.1| tyrosine recombinase XerD [Escherichia coli B088] gi|291432336|gb|EFF05318.1| tyrosine recombinase XerD [Escherichia coli B185] gi|291469024|gb|EFF11515.1| tyrosine recombinase XerD [Escherichia coli B354] gi|299879070|gb|EFI87281.1| tyrosine recombinase XerD [Escherichia coli MS 196-1] gi|300298921|gb|EFJ55306.1| tyrosine recombinase XerD [Escherichia coli MS 185-1] gi|300304782|gb|EFJ59302.1| tyrosine recombinase XerD [Escherichia coli MS 200-1] gi|300318727|gb|EFJ68511.1| tyrosine recombinase XerD [Escherichia coli MS 175-1] gi|300401595|gb|EFJ85133.1| tyrosine recombinase XerD [Escherichia coli MS 84-1] gi|300409320|gb|EFJ92858.1| tyrosine recombinase XerD [Escherichia coli MS 45-1] gi|300411832|gb|EFJ95142.1| tyrosine recombinase XerD [Escherichia coli MS 115-1] gi|300418727|gb|EFK02038.1| tyrosine recombinase XerD [Escherichia coli MS 182-1] gi|300452792|gb|EFK16412.1| tyrosine recombinase XerD [Escherichia coli MS 116-1] gi|300458832|gb|EFK22325.1| tyrosine recombinase XerD [Escherichia coli MS 21-1] gi|300463810|gb|EFK27303.1| tyrosine recombinase XerD [Escherichia coli MS 187-1] gi|300526962|gb|EFK48031.1| tyrosine recombinase XerD [Escherichia coli MS 119-7] gi|300531583|gb|EFK52645.1| tyrosine recombinase XerD [Escherichia coli MS 107-1] gi|300841716|gb|EFK69476.1| tyrosine recombinase XerD [Escherichia coli MS 124-1] gi|300846158|gb|EFK73918.1| tyrosine recombinase XerD [Escherichia coli MS 78-1] gi|301077855|gb|EFK92661.1| tyrosine recombinase XerD [Escherichia coli MS 146-1] gi|306909382|gb|EFN39877.1| tyrosine recombinase XerD [Escherichia coli W] gi|307554870|gb|ADN47645.1| site-specific tyrosine recombinase XerD [Escherichia coli ABU 83972] gi|308926419|gb|EFP71895.1| tyrosine recombinase XerD [Shigella dysenteriae 1617] gi|309703254|emb|CBJ02589.1| tyrosine recombinase [Escherichia coli ETEC H10407] gi|312290402|gb|EFR18282.1| tyrosine recombinase XerD [Escherichia coli 2362-75] gi|312947427|gb|ADR28254.1| site-specific tyrosine recombinase XerD [Escherichia coli O83:H1 str. NRG 857C] gi|315062198|gb|ADT76525.1| site-specific tyrosine recombinase [Escherichia coli W] gi|315137493|dbj|BAJ44652.1| tyrosine recombinase xerD [Escherichia coli DH1] gi|315256777|gb|EFU36745.1| tyrosine recombinase XerD [Escherichia coli MS 85-1] gi|315293873|gb|EFU53225.1| tyrosine recombinase XerD [Escherichia coli MS 153-1] gi|315295682|gb|EFU55002.1| tyrosine recombinase XerD [Escherichia coli MS 16-3] gi|315614950|gb|EFU95588.1| tyrosine recombinase XerD [Escherichia coli 3431] gi|320175918|gb|EFW50996.1| Tyrosine recombinase XerD [Shigella dysenteriae CDC 74-1112] gi|320182203|gb|EFW57106.1| Tyrosine recombinase XerD [Shigella boydii ATCC 9905] gi|320184562|gb|EFW59363.1| Tyrosine recombinase XerD [Shigella flexneri CDC 796-83] gi|320189238|gb|EFW63897.1| Tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC1212] gi|320195013|gb|EFW69642.1| Tyrosine recombinase XerD [Escherichia coli WV_060327] gi|320202554|gb|EFW77124.1| Tyrosine recombinase XerD [Escherichia coli EC4100B] gi|320640537|gb|EFX10076.1| site-specific tyrosine recombinase XerD [Escherichia coli O157:H7 str. G5101] gi|320645784|gb|EFX14769.1| site-specific tyrosine recombinase XerD [Escherichia coli O157:H- str. 493-89] gi|320651084|gb|EFX19524.1| site-specific tyrosine recombinase XerD [Escherichia coli O157:H- str. H 2687] gi|320656580|gb|EFX24476.1| site-specific tyrosine recombinase XerD [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320662100|gb|EFX29501.1| site-specific tyrosine recombinase XerD [Escherichia coli O55:H7 str. USDA 5905] gi|320667175|gb|EFX34138.1| site-specific tyrosine recombinase XerD [Escherichia coli O157:H7 str. LSU-61] gi|323162515|gb|EFZ48365.1| tyrosine recombinase XerD [Escherichia coli E128010] gi|323167900|gb|EFZ53590.1| tyrosine recombinase XerD [Shigella sonnei 53G] gi|323180338|gb|EFZ65890.1| tyrosine recombinase XerD [Escherichia coli 1180] gi|323183448|gb|EFZ68845.1| tyrosine recombinase XerD [Escherichia coli 1357] gi|323188707|gb|EFZ73992.1| tyrosine recombinase XerD [Escherichia coli RN587/1] gi|323377218|gb|ADX49486.1| tyrosine recombinase XerD [Escherichia coli KO11] gi|323935874|gb|EGB32173.1| tyrosine recombinase XerD [Escherichia coli E1520] gi|323941585|gb|EGB37765.1| tyrosine recombinase XerD [Escherichia coli E482] gi|323946620|gb|EGB42643.1| tyrosine recombinase XerD [Escherichia coli H120] gi|323960809|gb|EGB56430.1| tyrosine recombinase XerD [Escherichia coli H489] gi|323966695|gb|EGB62127.1| tyrosine recombinase XerD [Escherichia coli M863] gi|323971668|gb|EGB66897.1| tyrosine recombinase XerD [Escherichia coli TA007] gi|323978814|gb|EGB73895.1| tyrosine recombinase XerD [Escherichia coli TW10509] gi|324005546|gb|EGB74765.1| tyrosine recombinase XerD [Escherichia coli MS 57-2] gi|324011756|gb|EGB80975.1| tyrosine recombinase XerD [Escherichia coli MS 60-1] gi|324119935|gb|EGC13814.1| tyrosine recombinase XerD [Escherichia coli E1167] gi|325498455|gb|EGC96314.1| site-specific tyrosine recombinase [Escherichia fergusonii ECD227] gi|326343096|gb|EGD66864.1| Tyrosine recombinase XerD [Escherichia coli O157:H7 str. 1125] gi|327251657|gb|EGE63343.1| tyrosine recombinase XerD [Escherichia coli STEC_7v] gi|330908926|gb|EGH37440.1| tyrosine recombinase XerD [Escherichia coli AA86] gi|331037055|gb|EGI09279.1| tyrosine recombinase XerD [Escherichia coli H736] gi|331042387|gb|EGI14529.1| tyrosine recombinase XerD [Escherichia coli M605] gi|331053606|gb|EGI25635.1| tyrosine recombinase XerD [Escherichia coli TA206] gi|331058398|gb|EGI30379.1| tyrosine recombinase XerD [Escherichia coli TA143] gi|331063297|gb|EGI35210.1| tyrosine recombinase XerD [Escherichia coli TA271] gi|331068473|gb|EGI39868.1| tyrosine recombinase XerD [Escherichia coli TA280] gi|331073711|gb|EGI45032.1| tyrosine recombinase XerD [Escherichia coli H591] gi|331078135|gb|EGI49341.1| tyrosine recombinase XerD [Escherichia coli H299] gi|332087665|gb|EGI92792.1| tyrosine recombinase XerD [Shigella dysenteriae 155-74] gi|332090893|gb|EGI95984.1| tyrosine recombinase XerD [Shigella boydii 3594-74] gi|332102774|gb|EGJ06120.1| tyrosine recombinase xerD [Shigella sp. D9] Length = 298 Score = 137 bits (346), Expect = 2e-30, Method: Composition-based stats. Identities = 43/270 (15%), Positives = 95/270 (35%), Gaps = 24/270 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDY-----RKITTKHIRSGVESRKHTPSSAIQFLTS 139 +LA N+ ++ ++ + + + + + +S+ + L++ Sbjct: 19 KNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGYKATSSARLLSA 78 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195 +R LF++ R+++ +P + PK + ++ +++ + + Sbjct: 79 VRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLIDQPLELRDKAM 138 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGKET 254 E L +GLR S+ + + ++ K V L + + L Sbjct: 139 LEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVYWLETYLEHGRP 198 Query: 255 FFIN----------NDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAG 301 + +N Q+M F K A AG++ S H +R AT + G Sbjct: 199 WLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHAFATHLLNHG 258 Query: 302 ATAHELMATYGWKTVDQAETYTKGA-DRIR 330 A + G + + YT A +R+R Sbjct: 259 ADLRVVQMLLGHSDLSTTQIYTHVATERLR 288 >gi|162210085|ref|YP_332479.2| site-specific tyrosine recombinase XerD [Burkholderia pseudomallei 1710b] Length = 305 Score = 137 bits (346), Expect = 2e-30, Method: Composition-based stats. Identities = 46/268 (17%), Positives = 88/268 (32%), Gaps = 22/268 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKIT---TKHIRSGVESRKH-TPSSAIQFLTSM 140 L+ N+ ++ + + + + +R +S+ + L+ Sbjct: 28 HGLSRNTLDAYRRDLQLFAQWLAARHVASVDHASEPTLTEYIAARSDGKATSSNRRLSVF 87 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAF 196 R + WAVR+ A++P L + K+ ++ ++ + G + R Sbjct: 88 RRYYGWAVREHRAAVDPTLRIASAKQAPRFPSTLSEAQVEALLAAPDVDTPLGLRDRTML 147 Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------ELPDGFMKLLAM 247 E + SGLR S+ + N ++ G+ + + Sbjct: 148 ELMYASGLRVSELVTLKTVEVGLNEGVVRVTGKGSKERLVPFGEVAHGWIERYLRDARPA 207 Query: 248 T--PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGAT 303 + F+ M QF K A +A V + S H +R AT + GA Sbjct: 208 LLGARAADALFVTARGDGMTRQQFWNIIKRHAQQADVRVHLSPHTLRHAFATHLLNHGAD 267 Query: 304 AHELMATYGWKTVDQAETYTKGADRIRL 331 + G + + YT A R RL Sbjct: 268 LRVVQLLLGHSDISTTQIYTHVA-RERL 294 >gi|296536869|ref|ZP_06898916.1| integrase family protein [Roseomonas cervicalis ATCC 49957] gi|296262840|gb|EFH09418.1| integrase family protein [Roseomonas cervicalis ATCC 49957] Length = 388 Score = 137 bits (346), Expect = 2e-30, Method: Composition-based stats. Identities = 55/341 (16%), Positives = 113/341 (33%), Gaps = 34/341 (9%) Query: 3 PSLRLPPFV--TKERTRHGKII-YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKRE 59 P+ +P + ++R G YYF + G + ++ + E Sbjct: 7 PAEDVPAGLKPIRKRLADGSFRTYYFDRRTGTAL---------GTDRAVAIERLRDMREE 57 Query: 60 YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119 + P +P + + L+S +R S + +R + +++R IT + Sbjct: 58 ALAPPAVEPGSFEALVSAFRASPEYLDKRATTRQQYAYEMTELLRDLHGSLLSDITPAVV 117 Query: 120 RSGVESRKH--TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177 + + A + +R+LF +A R+ A P V + WT + Sbjct: 118 YAIRDRTAAAGHRHKANSLIRMLRILFGFAKRRGLAATKPTDDVPLIAVEPR-TAVWTPQ 176 Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN------IFSIKTQKTGT 231 ++ F + Q +A LLY+ R SD ++L N ++ +KT Sbjct: 177 QIEAFLTGARPSLQAGMA--LLLYTVQRLSDVMALTRENLHENPADGRLWIGLRQRKTSA 234 Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFK-------AKATKAGVNK 284 ++ +L P + + F+ + + + G+ Sbjct: 235 LVWTPCHQRLAAILRALPPEQHHLVPSPTGLPWPKRNFARSWDAHLQRRNKQLAEQGLPL 294 Query: 285 SA----HGVRKFSATISADAGATAHELMATYGWKTVDQAET 321 +R+ A AGAT +++ A G + Sbjct: 295 IPALQRRDLRRTGMVQMALAGATPNQIAAVSGHSIDQTMKI 335 >gi|221068555|ref|ZP_03544660.1| tyrosine recombinase XerD [Comamonas testosteroni KF-1] gi|220713578|gb|EED68946.1| tyrosine recombinase XerD [Comamonas testosteroni KF-1] Length = 318 Score = 137 bits (346), Expect = 2e-30, Method: Composition-based stats. Identities = 59/316 (18%), Positives = 109/316 (34%), Gaps = 28/316 (8%) Query: 45 PAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR 104 A A P+ P+ + L I L+ N+ ++ R Sbjct: 3 EALKKARKSQIPEDWPQPLPQSQDA-LDEFIDALLLED---GLSHNTLSAYRRDLTAAAR 58 Query: 105 KSGDFDYRKITTKHIRSGVESR------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPC 158 K+ + + ++ +S+ + LT +R F WA+R++ +A +P Sbjct: 59 WLAQLQPPKVLDAALEADLQGYFTARVEGTKATSSNRRLTVLRRYFHWALREKRIAADPT 118 Query: 159 LSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSC--RA 212 + + K+ + T+E ++ G + R E + SGLR S+ R Sbjct: 119 VRMLAAKQPPRTPKTLTQEQVEALLDAPDVETALGLRDRAMLELMYASGLRVSELVGVRM 178 Query: 213 GVQHLQNNIFSIKTQKTGTIITVE-------LPDGFMKLLAMTPIGKET--FFINNDKQK 263 L++ + + + + L + A G++T F+ Sbjct: 179 HELDLRSGVLRVTGKGRKERLVPFGQEAQHWLERYLQQARAAILGGQQTEEVFVTQRGAG 238 Query: 264 MNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321 M+ F + K A AG+N S H +R AT + GA + G + Sbjct: 239 MSRVMFWVIVKKCAQIAGINSPLSPHTLRHAFATHLLNHGADLRVVQMLLGHADISTTTI 298 Query: 322 YTKGADRIRLGIKNSR 337 YT A R RL ++ Sbjct: 299 YTHVA-RERLKALHAE 313 >gi|306812204|ref|ZP_07446402.1| site-specific tyrosine recombinase XerD [Escherichia coli NC101] gi|305854242|gb|EFM54680.1| site-specific tyrosine recombinase XerD [Escherichia coli NC101] Length = 298 Score = 137 bits (346), Expect = 2e-30, Method: Composition-based stats. Identities = 43/270 (15%), Positives = 95/270 (35%), Gaps = 24/270 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDY-----RKITTKHIRSGVESRKHTPSSAIQFLTS 139 +LA N+ ++ ++ + + + + + +S+ + L++ Sbjct: 19 KNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGYKATSSARLLSA 78 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195 +R LF++ R+++ +P + PK + ++ +++ + + Sbjct: 79 VRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLIDQPLELRDKAM 138 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGKET 254 E L +GLR S+ + + ++ K V L + + L Sbjct: 139 LEVLYATGLRVSELVGLTMSDISLPQGVVRVIGKGNKERLVPLGEEAVYWLETYLEHGRP 198 Query: 255 FFIN----------NDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAG 301 + +N Q+M F K A AG++ S H +R AT + G Sbjct: 199 WLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHAFATHLLNHG 258 Query: 302 ATAHELMATYGWKTVDQAETYTKGA-DRIR 330 A + G + + YT A +R+R Sbjct: 259 ADLRVVQMLLGHSDLSTTQIYTHVATERLR 288 >gi|331654392|ref|ZP_08355392.1| tyrosine recombinase XerD [Escherichia coli M718] gi|331047774|gb|EGI19851.1| tyrosine recombinase XerD [Escherichia coli M718] Length = 298 Score = 137 bits (346), Expect = 2e-30, Method: Composition-based stats. Identities = 44/270 (16%), Positives = 95/270 (35%), Gaps = 24/270 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTK-----HIRSGVESRKHTPSSAIQFLTS 139 +LA N+ ++ ++ T + + + + +S+ + L++ Sbjct: 19 KNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQCDDLQALLAERLEGGYKATSSARLLSA 78 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195 +R LF++ R+++ +P + PK + ++ +++ + + Sbjct: 79 VRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLIDQPLELRDKAM 138 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGKET 254 E L +GLR S+ + + ++ K V L + + L Sbjct: 139 LEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVYWLETYLEHGRP 198 Query: 255 FFIN----------NDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAG 301 + +N Q+M F K A AG++ S H +R AT + G Sbjct: 199 WLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHAFATHLLNHG 258 Query: 302 ATAHELMATYGWKTVDQAETYTKGA-DRIR 330 A + G + + YT A +R+R Sbjct: 259 ADLRVVQMLLGHSDLSTTQIYTHVATERLR 288 >gi|193212286|ref|YP_001998239.1| tyrosine recombinase XerD [Chlorobaculum parvum NCIB 8327] gi|193085763|gb|ACF11039.1| tyrosine recombinase XerD [Chlorobaculum parvum NCIB 8327] Length = 304 Score = 137 bits (346), Expect = 2e-30, Method: Composition-based stats. Identities = 51/265 (19%), Positives = 95/265 (35%), Gaps = 25/265 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESRKHT---PSSAIQFLTS 139 + + N+R S+ + + + + T HIR +E SS + +++ Sbjct: 23 RNFSGNTRESYLNDLGRYLAHLQGQQVKPEEATPDHIRQFIEELHDIGLEASSVARNISA 82 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----QQFKSFWSEGS---QP 192 +R K+ + + NP ++ +PK T E+M + GS + Sbjct: 83 IRSYHKFLLAERIAQANPAENIHQPKLARTLPSVLTVEEMMALLEAPLRRHPPGSFMLRD 142 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAM---- 247 + E L +G+R S+ G +L + I+ K V + K L Sbjct: 143 KAMLELLYATGIRVSELIGLGKLNLYLDEGFIRVFGKGSKERLVPVGRNATKWLKRYLEE 202 Query: 248 ------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299 + K+ F+N+ K++ + A AG+ K S H R AT + Sbjct: 203 LRPGMVSATSKDVLFLNSRGGKLSRMSAWNIVRQHAIIAGIEKPISPHTFRHSFATHLLE 262 Query: 300 AGATAHELMATYGWKTVDQAETYTK 324 GA + G ++ + YT Sbjct: 263 GGADLRAVQEMLGHSSIIATQIYTH 287 >gi|156973275|ref|YP_001444182.1| site-specific tyrosine recombinase XerD [Vibrio harveyi ATCC BAA-1116] gi|156524869|gb|ABU69955.1| hypothetical protein VIBHAR_00956 [Vibrio harveyi ATCC BAA-1116] Length = 305 Score = 137 bits (346), Expect = 2e-30, Method: Composition-based stats. Identities = 47/278 (16%), Positives = 102/278 (36%), Gaps = 26/278 (9%) Query: 74 LISEYRKSAHW--GSLAVNSRISFESYFDQIIRKSGDFDYRKITT-----KHIRSGVESR 126 L+ ++ A W L+ N+ S+ + +++ YR + +S + Sbjct: 14 LVEQFL-DAMWMERGLSENTLASYRNDLMKLLAWMEQHSYRLDFISLSGLQEYQSYLVDL 72 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF- 185 + +S + L+++R LF++ R++ A +P + PK + ++E + Sbjct: 73 DYKQTSRARMLSAIRRLFQYIHREKVRADDPSALLVSPKLPQRLPKDISEEQVDALLDAP 132 Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGF 241 + + E L +GLR ++ ++++ ++ T K G V + + Sbjct: 133 DPNDPVELRDKAMLELLYATGLRVTELVSLTMENVSLRQGLVRVTGKGGKERLVPMGENA 192 Query: 242 MKLLAMTP----------IGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHG 288 + + + F + ++M F K A AG++ S H Sbjct: 193 VDWIETFIQQGRSALLGETTSDVVFPSKRARQMTRQTFWHRIKYYAVIAGIDTDQLSPHV 252 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 +R AT + GA + G + + YT A Sbjct: 253 LRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVA 290 >gi|293372055|ref|ZP_06618451.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] gi|19068096|gb|AAL29907.1| putative integrase [Bacteroides fragilis] gi|292632989|gb|EFF51573.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] Length = 407 Score = 137 bits (346), Expect = 2e-30, Method: Composition-based stats. Identities = 59/359 (16%), Positives = 116/359 (32%), Gaps = 33/359 (9%) Query: 8 PPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYI----NS 63 P F K R + Y R + + + Sbjct: 58 PKFAVKHNRRKENLSLYL--IDKPRTPAERQQNKETLELATKIRAEREQEFKESMLGYRL 115 Query: 64 PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG----DFDYRKITTKHI 119 + + Y S + + +I+ + D + + IT + + Sbjct: 116 KKDRTVNFLDYFQAYINSYTKKDIRMV-QIALSRFKDFLKEQYPMNEFSIKPELITKEMM 174 Query: 120 RSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR--PWT 175 V + A + + ++A+ + + +PC SV K ++ +R + Sbjct: 175 EQFVAYLQSRSVGEGAKSIYQRFKKVIRYAIDHDVMLKDPCKSVT-CKVDSQMLRKDVLS 233 Query: 176 KEDMQQFKSFWSEGSQP--RLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTG- 230 E++Q+ + + P R AF F LY GLR D +++ N + + KT Sbjct: 234 PEEIQKLAACHYDNENPNVRRAFIFCLYCGLRFCDVKDLTYKNVDYANRLLKFEQSKTKG 293 Query: 231 ----TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-- 284 + + + L DG + ++ P+ K N K +AG++K Sbjct: 294 HSASSGVVIPLNDGLLSIIGEAPVDKNCLIFNLP----TYESCCKSVKRWVKRAGIDKHI 349 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343 S H R A + GA + + G + E YT+ D +L + + + Sbjct: 350 SWHCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYTRAVD--KLKEEAINSLPELK 406 >gi|331269460|ref|YP_004395952.1| tyrosine recombinase XerD [Clostridium botulinum BKT015925] gi|329126010|gb|AEB75955.1| tyrosine recombinase XerD [Clostridium botulinum BKT015925] Length = 292 Score = 137 bits (346), Expect = 2e-30, Method: Composition-based stats. Identities = 47/269 (17%), Positives = 97/269 (36%), Gaps = 20/269 (7%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYF----DQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130 +S+Y + L+ N+ +++ + + ++ D + + ++ Sbjct: 5 LSKYIEDMLKKELSKNTIEAYKRDLIKFGEFLNKRHEDILDSDMVSIMAYVQTLKKERKA 64 Query: 131 -SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS-- 187 SS I+ L ++R +K+ ++ NP ++ E PK K T +++ +F S Sbjct: 65 DSSIIRSLVAIRNFYKFLIKTGQNIDNPLINYEVPKNKRTLPETLTVDEVDKFLSAPDCN 124 Query: 188 --EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK-TGTIITVE-------- 236 +G + + E + +G++ S+ R + + + IK + + Sbjct: 125 EYKGIRDKAMLELMYATGMKVSELLRITIFDVNLKLSYIKCKGAKDKERIIPIGSYAVNC 184 Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSA 294 L + M E F N KM F K A A +NK + +R A Sbjct: 185 LNEYLKVRDRMNADNLELLFCNLRGGKMTRQGFWKIVKKYAKDANINKKIDSYTLRHSFA 244 Query: 295 TISADAGATAHELMATYGWKTVDQAETYT 323 GA + G T+ + Y+ Sbjct: 245 VHLLQNGADMKSVQELLGHNTIATTQIYS 273 >gi|300310183|ref|YP_003774275.1| site specific integrase/recombinase [Herbaspirillum seropedicae SmR1] gi|300072968|gb|ADJ62367.1| site specific integrase/recombinase protein [Herbaspirillum seropedicae SmR1] Length = 307 Score = 137 bits (346), Expect = 2e-30, Method: Composition-based stats. Identities = 52/268 (19%), Positives = 97/268 (36%), Gaps = 23/268 (8%) Query: 86 SLAVNSRISFESYFDQIIRKSGDFDYRKI---TTKHIRSGVESRKH--TPSSAIQFLTSM 140 L+ N+ ++ + + + + + + +R PSS+ + L + Sbjct: 30 GLSKNTLEAYRRDMTRYAHWLYQERAKALYETQAEDLNAYFAARHDQTKPSSSNRRLAVL 89 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAF 196 + F+ A+RQ +VA +PCL + ++ + ++ ++ + G + R Sbjct: 90 KRFFQLALRQHHVAADPCLKLRSARQPQRFPKTLSEGQVEALLAAPDVSTPLGLRDRAMI 149 Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-----ELPDGFMKLLAMTPIG 251 E + SGLR S+ + N ++ G+ + E M+ LA Sbjct: 150 ELMYASGLRVSELVLLKSIEVGMNEGVLRVTGKGSKTRLVPFGEEAGSWLMRYLAEARAQ 209 Query: 252 ------KETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGAT 303 + F+ M F K A +AGV S H +R AT + GA Sbjct: 210 ILQGQVDDALFVTARGGPMTRQMFWTLIKKYALQAGVTARLSPHTLRHAFATHLLNHGAD 269 Query: 304 AHELMATYGWKTVDQAETYTKGADRIRL 331 + G + + YT A R RL Sbjct: 270 LRVVQLLLGHADISTTQIYTHVA-RERL 296 >gi|37197590|dbj|BAC93429.1| site-specific recombinase XerD [Vibrio vulnificus YJ016] Length = 307 Score = 137 bits (346), Expect = 2e-30, Method: Composition-based stats. Identities = 45/265 (16%), Positives = 98/265 (36%), Gaps = 23/265 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITT-----KHIRSGVESRKHTPSSAIQFLTS 139 LA N+ S+ + ++++ YR + +S + + + +S + L++ Sbjct: 28 RGLAENTLASYRNDLMKLLQWMEANHYRLDFISLSGLQQYQSYLVDQDYKQTSRARMLSA 87 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195 +R LF++ R++ A +P + PK + ++E + + + Sbjct: 88 IRRLFQYLHREKVRADDPSALLVSPKLPQRLPKDISEEQVDALLDAPDPNDPVELRDKAM 147 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLAMTP----- 249 E L +GLR ++ ++++ ++ T K G V + + + + Sbjct: 148 LELLYATGLRVTELVSLTMENISLRQGVVRVTGKGGKERLVPMGENAIDWIETFIKQGRP 207 Query: 250 -----IGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAG 301 + F + ++M F K A AG++ S H +R AT + G Sbjct: 208 ALLGETSSDVVFPSKRARQMTRQTFWHRIKFYAVIAGIDTDHLSPHVLRHAFATHLLNYG 267 Query: 302 ATAHELMATYGWKTVDQAETYTKGA 326 A + G + + YT A Sbjct: 268 ADLRVVQMLLGHSDLSTTQIYTHVA 292 >gi|320355009|ref|YP_004196348.1| tyrosine recombinase XerD [Desulfobulbus propionicus DSM 2032] gi|320123511|gb|ADW19057.1| tyrosine recombinase XerD [Desulfobulbus propionicus DSM 2032] Length = 306 Score = 137 bits (346), Expect = 2e-30, Method: Composition-based stats. Identities = 52/270 (19%), Positives = 94/270 (34%), Gaps = 24/270 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFD---YRKITTKHIRSGV---ESRKHTPSSAIQFLT 138 LA N+ ++++ + R D D +I +H++ R+ S + L Sbjct: 27 RRLARNTVAAYQADLEFFFRFFSDADAILIERIDKEHVQQFFQYCHQRRIGARSNARRLA 86 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRL 194 ++R F++ + +A NP ++ PK + T ++ S + + Sbjct: 87 ALRAFFRFLQDRGVLAGNPLAEIDAPKIGRSLPKVLTIAEVDALLRPPSPPTPLAIRNHA 146 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLA------- 246 L SGLR S+ V + ++ K V +L Sbjct: 147 MLHLLYASGLRVSELVNLPVNGCNLHTGHLRILGKGNKERIVPFSAVAGTILRDYIERVR 206 Query: 247 ---MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAG 301 + G F +N + M +F + A AG+ K S H +R AT G Sbjct: 207 PLLLKGKGSPLLFCSNRGEAMTRHRFWQIVREIALIAGIRKAISPHVLRHSFATHLVAGG 266 Query: 302 ATAHELMATYGWKTVDQAETYTK-GADRIR 330 A + G + + YT ADR++ Sbjct: 267 ADLRSVQMMLGHSDIATTQIYTHVDADRLK 296 >gi|90413180|ref|ZP_01221176.1| tyrosine recombinase [Photobacterium profundum 3TCK] gi|90325871|gb|EAS42323.1| tyrosine recombinase [Photobacterium profundum 3TCK] Length = 298 Score = 137 bits (346), Expect = 2e-30, Method: Composition-based stats. Identities = 42/265 (15%), Positives = 98/265 (36%), Gaps = 23/265 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITT-----KHIRSGVESRKHTPSSAIQFLTS 139 L+ N+ +S+ + ++ + S D +YR +T + + + +S + +++ Sbjct: 19 RGLSENTLMSYRNDLTKLRKWSEDKNYRLVTLSSDDLQRYQQWLFDADFKQTSRARMVSA 78 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----QQFKSFWSEGSQPRLA 195 +R LF++ R++ +P + P+ + T+E + + + + Sbjct: 79 IRRLFQYLYREKMRDDDPSSMMVSPRLPKRLPKDLTEEQVGALLDAPDTNNPIELRDKAM 138 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFMKLLAMTPIGK-- 252 E L +GLR ++ ++++ ++ G V + + + + Sbjct: 139 LELLYATGLRVTELVSLTMENVSLRQGVVRVMGKGDKERLVPMGESAIDWIEEFIDSGRP 198 Query: 253 --------ETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAG 301 + F + ++M F K A AG++ S H +R AT + G Sbjct: 199 QLLGEKSSDVLFPSKRARQMTRQTFWHRIKHYAVIAGIDTDTLSPHVMRHAFATHLLNYG 258 Query: 302 ATAHELMATYGWKTVDQAETYTKGA 326 A + G + + YT A Sbjct: 259 ADLRVVQMLLGHSDLSTTQIYTHVA 283 >gi|225388004|ref|ZP_03757728.1| hypothetical protein CLOSTASPAR_01737 [Clostridium asparagiforme DSM 15981] gi|225045926|gb|EEG56172.1| hypothetical protein CLOSTASPAR_01737 [Clostridium asparagiforme DSM 15981] Length = 283 Score = 137 bits (346), Expect = 2e-30, Method: Composition-based stats. Identities = 41/261 (15%), Positives = 84/261 (32%), Gaps = 22/261 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTK------HIRSGVESRKHTPSSAIQFLT 138 + N+ IS++ Q+ + +E ++ + L Sbjct: 16 KKASKNTVISYQRDLVQLAAYLEAKGITEAEKVTKTSLNSYILYLEKEGKATTTISRELA 75 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK----SFWSEGSQPRL 194 S++ F + +R+ + +P ++ PK + + T ++ + + + Sbjct: 76 SIKAFFHYELREGRIRRDPAEFIKAPKVEKKAPVILTVNEVNALLCQPGDRTPKELRDKA 135 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET 254 E L +G+R S+ + + + I + V + L T Sbjct: 136 MLELLYATGIRVSELISLKLTDVNMQVGYITCRDRSKERMVPFGKNARQALVQYMGEART 195 Query: 255 ----------FFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGA 302 F N + Q M+ F K KAG+ + + H +R A +GA Sbjct: 196 ELLKGKNSDWLFTNCNGQAMSRQGFWKLIKQYGEKAGIKSDITPHTLRHSFAAHLIRSGA 255 Query: 303 TAHELMATYGWKTVDQAETYT 323 H + A G + YT Sbjct: 256 DIHAVQAMLGHSDTATTQIYT 276 >gi|297374655|emb|CBL42942.1| phage integrase family protein [Candidatus Magnetobacterium bavaricum] Length = 324 Score = 137 bits (346), Expect = 2e-30, Method: Composition-based stats. Identities = 52/323 (16%), Positives = 109/323 (33%), Gaps = 18/323 (5%) Query: 22 IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKS 81 ++Y L + ++ AL K + + R +L+ + Y Sbjct: 10 VWYVEVKRNVVRSLQTRDDREARQRFV-ALQREAVKGKLVVLDRTPTMSLQEFVKAYL-- 66 Query: 82 AHW--GSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGVESRKHTPSSAIQ 135 W + A + E ++ G D +K + S K+ P++ Sbjct: 67 -EWCQSNRAGRTCERAELALRKLTEVVGKNKLIADIKKKNMDDYVAYCTSIKNKPTTINI 125 Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA 195 + ++ F WAV +EY+ NP ++ K + R ++ +Q + + RL Sbjct: 126 EIRHIKAAFSWAVEREYLKTNPFAGYKQLKYQNTIPRFLSENQIQDVYTAIGDNKTYRLI 185 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF 255 F +++G R ++ ++ + + KT + G +L+ G Sbjct: 186 FALYIHTGARRNEIQNIKWSDIKPDGIIFEKTKTYRSRKIPTSKGLKAILSEYDRGIGQI 245 Query: 256 FINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWK 314 F + + S K KAG+ H +R A++ AG + G Sbjct: 246 F------NITPSHISHVMKDYFKKAGIGHFKLHDLRHTFASLLVQAGIDLRTIQVLLGHT 299 Query: 315 TVDQAETYTK-GADRIRLGIKNS 336 + Y ++++ I + Sbjct: 300 SYSTTLIYAHLSQNQLQDAIDHI 322 >gi|313673072|ref|YP_004051183.1| integrase family protein [Calditerrivibrio nitroreducens DSM 19672] gi|312939828|gb|ADR19020.1| integrase family protein [Calditerrivibrio nitroreducens DSM 19672] Length = 300 Score = 137 bits (346), Expect = 2e-30, Method: Composition-based stats. Identities = 39/263 (14%), Positives = 100/263 (38%), Gaps = 23/263 (8%) Query: 85 GSLAVNSRISFESYFDQIIR--KSGDFDYRKIT---TKHIRSGVESRKHTPSSAIQFLTS 139 + + ++ S+ + ++I K D ++I + + + R + SS + +++ Sbjct: 18 KNASDHTIRSYMNDLVELINFVKDESIDIKEIDFFALRGYITTLYDRSLSKSSIERKIST 77 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----QQFKSFWSEGSQPRLA 195 ++ FK+ ++ Y+ N ++ PK++ + + + +D+ + +G + L Sbjct: 78 IKSFFKFLTQKGYLEENHARMLKFPKKEKKLFKVFNIDDLFTLLELPDKNTPQGIRDALL 137 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-IITVELPD-----------GFMK 243 E + +G+R S+ + + ++ + G + L + Sbjct: 138 MELMYGTGVRVSELVGIKIDDIDFQGLRVRVRGKGKKERMIPLAEFHIDFIKKYLATRDD 197 Query: 244 LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAG 301 + I + FIN + ++ + AG+ S H R AT ++G Sbjct: 198 IPKSRTIKTDKLFINKNGTSLSDRSVRRIVEKYLKMAGLPLDFSPHSFRHSFATHMLESG 257 Query: 302 ATAHELMATYGWKTVDQAETYTK 324 A + + G ++ + YT Sbjct: 258 ADLRTIQSLLGHSSLSTTQKYTH 280 >gi|157148431|ref|YP_001455750.1| site-specific tyrosine recombinase XerD [Citrobacter koseri ATCC BAA-895] gi|157085636|gb|ABV15314.1| hypothetical protein CKO_04256 [Citrobacter koseri ATCC BAA-895] Length = 298 Score = 137 bits (346), Expect = 2e-30, Method: Composition-based stats. Identities = 42/270 (15%), Positives = 92/270 (34%), Gaps = 24/270 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGD-----FDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139 +LA N+ ++ ++ + + + + + +S+ + L++ Sbjct: 19 RNLAENTLSAYRRDLSMVVEWLHHRGKTLATVQSDDLQTLLAERMDGGYKATSSARLLSA 78 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195 R F+ R+++ +P + PK + ++ +++ + + Sbjct: 79 TRRFFQHLYREKFREDDPSAQLASPKLPQRLPKDLSEAQVERLLQSPVVDQPLELRDKAM 138 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGKET 254 E L +GLR S+ + + ++ K V L + + L Sbjct: 139 LEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVYWLETYLEHGRP 198 Query: 255 FFIN----------NDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAG 301 + +N Q+M F K A AG++ S H +R AT + G Sbjct: 199 WLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHAFATHLLNHG 258 Query: 302 ATAHELMATYGWKTVDQAETYTKGA-DRIR 330 A + G + + YT A +R+R Sbjct: 259 ADLRVVQMLLGHSDLSTTQIYTHVATERLR 288 >gi|218550141|ref|YP_002383932.1| site-specific tyrosine recombinase XerD [Escherichia fergusonii ATCC 35469] gi|218357682|emb|CAQ90323.1| site-specific tyrosine recombinase [Escherichia fergusonii ATCC 35469] Length = 298 Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats. Identities = 41/265 (15%), Positives = 91/265 (34%), Gaps = 23/265 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDY-----RKITTKHIRSGVESRKHTPSSAIQFLTS 139 +LA N+ ++ ++ + + + + + +S+ + L++ Sbjct: 19 KNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGYKATSSARLLSA 78 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195 +R LF++ R+++ +P + PK + ++ +++ + + Sbjct: 79 VRRLFQYLYRKKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLIDQPLELRDKAM 138 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGKET 254 E L +GLR S+ + + ++ K V L + + L Sbjct: 139 LEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVYWLETYLEHGRP 198 Query: 255 FFIN----------NDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAG 301 + +N Q+M F K A AG++ S H +R AT + G Sbjct: 199 WLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHAFATHLLNHG 258 Query: 302 ATAHELMATYGWKTVDQAETYTKGA 326 A + G + + YT A Sbjct: 259 ADLRVVQMLLGHSDLSTTQIYTHVA 283 >gi|326204549|ref|ZP_08194406.1| integrase family protein [Clostridium papyrosolvens DSM 2782] gi|325985342|gb|EGD46181.1| integrase family protein [Clostridium papyrosolvens DSM 2782] Length = 297 Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats. Identities = 48/261 (18%), Positives = 99/261 (37%), Gaps = 21/261 (8%) Query: 97 SYFDQIIRKSGDFD-YRKITTKHIRSGVE----SRKHTPSSAIQFLTSMRVLFKWAVRQE 151 S F + G ITT +R +K+ + + + S+R F + + QE Sbjct: 33 SIFSSFVESQGIKPTVDAITTPLLRKYTTFLKIDKKYEVETIRRKINSLRSFFSFLISQE 92 Query: 152 YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP-----RLAFEFLLYSGLRC 206 Y+ NP + PK+ ++++ S + S+ + E L+++GLR Sbjct: 93 YIDKNPMAPITAPKKPDRLPIYLKPDEIKLLISMPMKHSRDNKLRDKCIIETLVFTGLRR 152 Query: 207 SDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLL-----AMTPIGKETFFINN 259 S+ Q++ +N ++ K V + + + L P+ FI+ Sbjct: 153 SELLSLNWQNIDFGSNTITVLNGKGKKQRVVPITEPLISDLWAYLQTRLPLHDNAVFISG 212 Query: 260 DKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSATISADAGATAHELMATYGWKTV 316 + +++ T + F+ AG+ + H +R T+ GA + + G + Sbjct: 213 NGTRLSTTPLNQLFRRYLKLAGLTGKGYTIHKLRHSYGTLLLQNGADLISIQSLMGHNDL 272 Query: 317 DQAETYTKGADRIRLGIKNSR 337 + + YT D L + + Sbjct: 273 NTTKIYTH-VDMKHLKQEVKK 292 >gi|28198560|ref|NP_778874.1| site-specific tyrosine recombinase XerD [Xylella fastidiosa Temecula1] gi|182681239|ref|YP_001829399.1| site-specific tyrosine recombinase XerD [Xylella fastidiosa M23] gi|73920482|sp|Q87DN0|XERD_XYLFT RecName: Full=Tyrosine recombinase xerD gi|28056644|gb|AAO28523.1| integrase/recombinase [Xylella fastidiosa Temecula1] gi|182631349|gb|ACB92125.1| tyrosine recombinase XerD [Xylella fastidiosa M23] gi|307579687|gb|ADN63656.1| site-specific tyrosine recombinase XerD [Xylella fastidiosa subsp. fastidiosa GB514] Length = 324 Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats. Identities = 52/274 (18%), Positives = 95/274 (34%), Gaps = 30/274 (10%) Query: 85 GSLAVNSRISFESYFDQIIR----KSGDFD-YRKITTKHIRSGVESRKHTPSSAIQFLTS 139 L+ ++ S+ + + R ++G + + ++P S + + Sbjct: 38 HGLSRHTLNSYRRDLEGLARWNNGRAGPLATLTPPALLDYLTWRTQQHYSPLSNARLRSV 97 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195 +R F +AV + NP + P + T+ ++ + EG + R Sbjct: 98 LRTFFSYAVECGWRNDNPSTLLAHPVLPHPLPKALTESQIEALLAAPSIETPEGLRNRAM 157 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLA-------- 246 E + +GLR S+ V L ++ T K G V L + L Sbjct: 158 LELMYAAGLRVSELVTLPVAMLNQRQGVLRITGKGGKERLVPLGEESQHWLQRYLEQARP 217 Query: 247 ---------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSA 294 G FIN + ++++ QF W K A G+ S H +R A Sbjct: 218 SLAADKPIPADSDGDVPLFINTNLKRLSRQQFWRWIKHYAALVGIAPNKVSPHVLRHSFA 277 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADR 328 T + GA L G +++ + YT A + Sbjct: 278 THLLNHGADLRALQMLLGHRSISTTQIYTLIARQ 311 >gi|46580064|ref|YP_010872.1| phage integrase family site specific recombinase [Desulfovibrio vulgaris str. Hildenborough] gi|46449480|gb|AAS96131.1| site-specific recombinase, phage integrase family [Desulfovibrio vulgaris str. Hildenborough] Length = 294 Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats. Identities = 48/267 (17%), Positives = 91/267 (34%), Gaps = 21/267 (7%) Query: 85 GSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSGVESRKHTP--SSAIQFLTS 139 LA N+ ++ + ++ + + G V+ R+ + + L + Sbjct: 12 RGLAENTLAAYSADLIELQVFLEERGCLLAEVDEQTLFMHVVDLRRRGMAGRTLARHLAT 71 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRLA 195 +R F +AV + + +P L +E PK T+++M + G + R Sbjct: 72 LRGFFAFAVGEGELEADPALFLENPKLARNLPDVLTRDEMATILARPDLSDRLGFRDRTM 131 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------ELPDGFMKLLA 246 E + +GLR S+ C ++ G + + Sbjct: 132 LELMYAAGLRVSELCALRPLDFDAQAGVVRVFGKGAKERIVPVHHVSCALVTAYLRDWRP 191 Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATA 304 + F+N + ++ K +AG++K S H R AT + GA Sbjct: 192 AFSPVEPAMFLNRSGKGLSRQAVWKVVKRHVAEAGIHKDISPHTFRHSFATHLLEGGADL 251 Query: 305 HELMATYGWKTVDQAETYTK-GADRIR 330 + G + E YT ADR+R Sbjct: 252 RSVQLLLGHADISATEIYTHVQADRLR 278 >gi|124383411|ref|YP_001028462.1| site-specific tyrosine recombinase XerD [Burkholderia mallei NCTC 10229] gi|254177062|ref|ZP_04883719.1| tyrosine recombinase XerD [Burkholderia mallei ATCC 10399] gi|254187507|ref|ZP_04894019.1| tyrosine recombinase XerD [Burkholderia pseudomallei Pasteur 52237] gi|124291431|gb|ABN00700.1| tyrosine recombinase XerD [Burkholderia mallei NCTC 10229] gi|157935187|gb|EDO90857.1| tyrosine recombinase XerD [Burkholderia pseudomallei Pasteur 52237] gi|160698103|gb|EDP88073.1| tyrosine recombinase XerD [Burkholderia mallei ATCC 10399] Length = 329 Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats. Identities = 53/307 (17%), Positives = 96/307 (31%), Gaps = 28/307 (9%) Query: 52 TGSTPKREYINSPRKKPTTLKWLISE----YRKSAHW--GSLAVNSRISFESYFDQIIRK 105 G P + WL S A W L+ N+ ++ + Sbjct: 13 AGRAPAPPADRPVDALAASPAWLDSRASIDLFCDAMWLEHGLSRNTLDAYRRDLQLFAQW 72 Query: 106 SGDFDYRKIT---TKHIRSGVESRKH-TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV 161 + + + +R +S+ + L+ R + WAVR+ A++P L + Sbjct: 73 LAARHAASVDHASEPTLTEYIAARSDGKATSSNRRLSVFRRYYGWAVREHRAAVDPTLRI 132 Query: 162 ERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL 217 K+ ++ ++ + G + R E + SGLR S+ + Sbjct: 133 ASAKQAPRFPSTLSEAQVEALLAAPDVDTPLGLRDRTMLELMYASGLRVSELVTLKTVEV 192 Query: 218 QNNIFSIKTQKTGTIITV---------ELPDGFMKLLAMT--PIGKETFFINNDKQKMNA 266 N ++ G+ + + + F+ M Sbjct: 193 GLNEGVVRVTGKGSKERLVPFGEVAHGWIERYLRDARPALLGARAADALFVTARGDGMTR 252 Query: 267 TQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 QF K A +A V + S H +R AT + GA + G + + YT Sbjct: 253 QQFWNIIKRHAQQADVRVHLSPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTH 312 Query: 325 GADRIRL 331 A R RL Sbjct: 313 VA-RERL 318 >gi|254451180|ref|ZP_05064617.1| tyrosine recombinase XerD [Octadecabacter antarcticus 238] gi|198265586|gb|EDY89856.1| tyrosine recombinase XerD [Octadecabacter antarcticus 238] Length = 313 Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats. Identities = 47/284 (16%), Positives = 95/284 (33%), Gaps = 28/284 (9%) Query: 74 LISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV---ESRKHT 129 I + ++ A A N+++++ D + + H+ + +++ Sbjct: 11 WIQAFLEAQAAELDAATNTQLAYARDLMDFSDWLADTHFAAVAQDHVEKYLIWCDAQGLA 70 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 ++ + L++++ LF++A + + NP + + P R + + ++ + + Sbjct: 71 KATRARRLSAIKQLFRFAFEEGWRVDNPAIQISGPGRDKRLPKTLSHSEVDALLNAARDA 130 Query: 190 SQPRLA----FEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFMKL 244 + L E L +G+R ++ V + + + K V L Sbjct: 131 KKDPLRTTCLMELLYATGMRVTELVSLPVSAARGDPRMLLVRGKGDKERMVPLSPPARAA 190 Query: 245 LAM----------------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--- 285 A+ TP K F + F K AT GV +S Sbjct: 191 TAVWLKTRDKAEDATFKDGTPRSKFLFPSRGKLGHLTRQSFFNLIKDLATAGGVTRSKVT 250 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 H +R AT + GA + G V E YT D Sbjct: 251 PHTLRHAFATHLLEGGADLRSIQTLLGHVDVATTEIYTHVLDER 294 >gi|27363993|ref|NP_759521.1| site-specific tyrosine recombinase XerD [Vibrio vulnificus CMCP6] gi|161486657|ref|NP_933458.2| site-specific tyrosine recombinase XerD [Vibrio vulnificus YJ016] gi|320157372|ref|YP_004189751.1| tyrosine recombinase XerD [Vibrio vulnificus MO6-24/O] gi|34222790|sp|Q7ZAJ0|XERD_VIBVU RecName: Full=Tyrosine recombinase xerD gi|71153415|sp|Q7MNQ0|XERD_VIBVY RecName: Full=Tyrosine recombinase xerD gi|27360110|gb|AAO09048.1| tyrosine recombinase XerD [Vibrio vulnificus CMCP6] gi|319932684|gb|ADV87548.1| tyrosine recombinase XerD [Vibrio vulnificus MO6-24/O] Length = 305 Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats. Identities = 45/265 (16%), Positives = 98/265 (36%), Gaps = 23/265 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITT-----KHIRSGVESRKHTPSSAIQFLTS 139 LA N+ S+ + ++++ YR + +S + + + +S + L++ Sbjct: 26 RGLAENTLASYRNDLMKLLQWMEANHYRLDFISLSGLQQYQSYLVDQDYKQTSRARMLSA 85 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195 +R LF++ R++ A +P + PK + ++E + + + Sbjct: 86 IRRLFQYLHREKVRADDPSALLVSPKLPQRLPKDISEEQVDALLDAPDPNDPVELRDKAM 145 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLAMTP----- 249 E L +GLR ++ ++++ ++ T K G V + + + + Sbjct: 146 LELLYATGLRVTELVSLTMENISLRQGVVRVTGKGGKERLVPMGENAIDWIETFIKQGRP 205 Query: 250 -----IGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAG 301 + F + ++M F K A AG++ S H +R AT + G Sbjct: 206 ALLGETSSDVVFPSKRARQMTRQTFWHRIKFYAVIAGIDTDHLSPHVLRHAFATHLLNYG 265 Query: 302 ATAHELMATYGWKTVDQAETYTKGA 326 A + G + + YT A Sbjct: 266 ADLRVVQMLLGHSDLSTTQIYTHVA 290 >gi|325280456|ref|YP_004252998.1| Tyrosine recombinase xerC [Odoribacter splanchnicus DSM 20712] gi|324312265|gb|ADY32818.1| Tyrosine recombinase xerC [Odoribacter splanchnicus DSM 20712] Length = 307 Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats. Identities = 52/284 (18%), Positives = 102/284 (35%), Gaps = 26/284 (9%) Query: 70 TLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFD----YRKITTKHIRSGVE 124 T + I Y+ SL+ NS ++ + ++ + D I+ H++ + Sbjct: 2 TWEDAIESYKTYLILEKSLSSNSVEAYLNDIKKLAKYCADKHHVTTPDAISYDHLKDYLM 61 Query: 125 ---SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 T + + ++S+R +K+ V + NP +E PK + T E++ Sbjct: 62 FINEVGVTNRTQARCISSIRSFYKFLVFDGQLENNPTKLLEAPKIGRKLPNILTTEEIDA 121 Query: 182 FKS----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVE 236 + + E + + E L GLR S+ + ++ +K + G + Sbjct: 122 MLNSVEMYKPEAQRNKAIIEMLYSCGLRVSELISIKLSNINFRQGIVKIEGKGNKERMIP 181 Query: 237 LPDG-----------FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284 L + L + ++ F+N ++ K AT+AG+ K Sbjct: 182 LSKNAKQEIKQYMKVYRDYLEIEKGYEDVLFLNKRGTALSRVMVFNIIKHLATRAGIKKN 241 Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 S H R A+ GA + G +++ E YT D Sbjct: 242 VSPHTFRHSFASHLVSGGADLRAVQDMLGHESILTTEIYTHLDD 285 >gi|298528177|ref|ZP_07015581.1| tyrosine recombinase XerD [Desulfonatronospira thiodismutans ASO3-1] gi|298511829|gb|EFI35731.1| tyrosine recombinase XerD [Desulfonatronospira thiodismutans ASO3-1] Length = 310 Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats. Identities = 49/269 (18%), Positives = 87/269 (32%), Gaps = 21/269 (7%) Query: 85 GSLAVNSRISF----ESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP-SSAIQFLTS 139 LA + ++ ++ + + K D + RK S + + S Sbjct: 22 KGLAHQTVAAYTEDLSTFLEFLQEKGKDVLDINDQVLLVYLMFLRRKGLQSRSLARHMAS 81 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195 +R + + Q + NP +E PK R + +++ S G++ + Sbjct: 82 LRGFYAYLHEQGLLKDNPAEMLENPKLPQLLPRVLSIPEVESILSQPSTGDKLGARDKTM 141 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-ITVELPDG--------FMKLLA 246 E L +GLR S+ V I+ G V L + Sbjct: 142 LEMLYAAGLRVSELINLKVLDFDPQAGIIRVWGKGARERLVPLHFSCMQWLDFYLQHWRS 201 Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATA 304 + FIN + ++ K AG+ K S H +R AT + GA Sbjct: 202 SFSPRVDKVFINRSGKALSRQGVWKIIKKYTVMAGIKKDVSPHTLRHSFATHLLEGGADL 261 Query: 305 HELMATYGWKTVDQAETYTK-GADRIRLG 332 + G + E YT +DR++ Sbjct: 262 RTVQVLLGHSDITATEIYTHVQSDRLKSA 290 >gi|300690586|ref|YP_003751581.1| site-specific tyrosine recombinase [Ralstonia solanacearum PSI07] gi|299077646|emb|CBJ50282.1| site-specific tyrosine recombinase [Ralstonia solanacearum PSI07] Length = 308 Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats. Identities = 50/297 (16%), Positives = 92/297 (30%), Gaps = 20/297 (6%) Query: 54 STPKREYINSPRKKPTTLKWLISE-YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYR 112 + E + R T++ + + + R Y + + D Sbjct: 2 TKAAPEVLAPARLSAETIQRFCDALWLEDGLARNTLDAYRRDLTLYAQWLAERGKAIDQT 61 Query: 113 KITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172 + + SSA + T + F+WA+R+ ++ +P + K+ + Sbjct: 62 EDGDLADYFAARHAESRASSANRRRTVFKRFFQWALREHVISADPSRLLSTAKQPPRIPK 121 Query: 173 PWTKEDMQQFKSF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-- 226 ++ ++ + G + R E + SGLR S+ + N ++ Sbjct: 122 TLSEAQVEALIAAPDIDTPLGLRDRAMIELMYASGLRVSEIVALKTVEVGLNEGVVRVVS 181 Query: 227 QKTGTIITVELPDGFMKLLAMTPIGKET----------FFINNDKQKMNATQFSIWFKAK 276 K G V L T F+ M F K Sbjct: 182 GKGGKDRLVPFGAEAGDWLRRYLRDGRTALLGERTADALFVTARGDGMTRQAFWHLIKRY 241 Query: 277 ATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 A +A ++ S H +R AT + GA + G + + YT A R RL Sbjct: 242 ALRADLHAPLSPHTLRHAFATHLLNHGADLRVVQMLLGHADISTTQIYTHVA-RERL 297 >gi|229015245|ref|ZP_04172280.1| hypothetical protein bmyco0001_55910 [Bacillus mycoides DSM 2048] gi|228746047|gb|EEL96015.1| hypothetical protein bmyco0001_55910 [Bacillus mycoides DSM 2048] Length = 280 Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats. Identities = 44/271 (16%), Positives = 100/271 (36%), Gaps = 12/271 (4%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-- 128 L Y+ + + ++ ++ ++R GD + + TT+ ++ + Sbjct: 3 LSEAWERYQLDKKIEGYSPLTLKTYCFQYNLLLRYFGDINMSEFTTEKLKGYLIEAGEHL 62 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 PSS + ++ LF+W + ++ NP ++ PK + + ++ +++ + Sbjct: 63 KPSSLGHRVRCIKSLFRWTHDEGFILKNPAAKLKEPKLGKKIPKFLSELEIEHLREAC-H 121 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-----ITVELPDGFMK 243 S FEFL +G R + + + + S+ G + Sbjct: 122 NSMENALFEFLYSTGCRIGEVVKLNRVDINFSTNSVIVHGKGDKEREVYFNTRCTIWLKR 181 Query: 244 LLAMTPIGKETFFINND--KQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISAD 299 L + FI K++M+ K + +A + KS H +R AT + Sbjct: 182 YLDERDDEEPCLFITERRPKRRMSIDNLRFIIKRISNRARIKKSIHPHQLRHSYATHMIN 241 Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIR 330 GA + + G + + Y + + ++R Sbjct: 242 NGAPLEVIQSLLGHEKSETTRIYAQLSGKLR 272 >gi|124267211|ref|YP_001021215.1| tyrosine recombinase XerD subunit [Methylibium petroleiphilum PM1] gi|124259986|gb|ABM94980.1| tyrosine recombinase XerD subunit [Methylibium petroleiphilum PM1] Length = 309 Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats. Identities = 56/306 (18%), Positives = 101/306 (33%), Gaps = 26/306 (8%) Query: 54 STPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR---KSGDFD 110 + P E P + + L+ N+ ++ R + Sbjct: 3 AEPHDELPPLPADSAVAIDAFLEALWVED---GLSDNTLAAYRRDLTLYARWLVHASGKP 59 Query: 111 YRKITTKHIRSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168 +R+ R +SA + LT R F+WA+R+ ++ +P L + K+ Sbjct: 60 LDGSGEADLRAYALERHAGTRATSANRRLTVFRRYFRWALREHRLSADPTLKLLAAKQPL 119 Query: 169 EGIRPWTKEDMQQFKSF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224 + ++ ++ G + R E L SGLR S+ ++ + ++ Sbjct: 120 RVPKTLSEAQVEALLEAPDVDTPLGLRDRAMLEILYASGLRVSELVTLKSVNVGYSEAAL 179 Query: 225 K-TQKTGTIITVELPDG--------FMKLLAMTPIGK--ETFFINNDKQKMNATQFSIWF 273 + T K V + + A G+ + F+ M F Sbjct: 180 RVTGKGSKERLVPFGEEAHGWLMRYLAEARAAILGGQASDALFVTARGGPMTRQAFWQLI 239 Query: 274 KAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 K A AG+ S H +R AT + GA + G + YT A R RL Sbjct: 240 KRHAGAAGIQVPLSPHTLRHAFATHLLNHGADLRAVQMLLGHADISTTTIYTHVA-RERL 298 Query: 332 GIKNSR 337 +S+ Sbjct: 299 KQLHSQ 304 >gi|212550679|ref|YP_002308996.1| site-specific recombinase XerD [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] gi|212548917|dbj|BAG83585.1| site-specific recombinase XerD [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] Length = 299 Score = 137 bits (345), Expect = 3e-30, Method: Composition-based stats. Identities = 48/277 (17%), Positives = 95/277 (34%), Gaps = 25/277 (9%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVE---S 125 LI YR +L+ NS ++ S +++++ D + ++ Sbjct: 4 SSLIKSYRMYLLLEKALSHNSVNAYMSDLEKLLKYLDSIGKDLLNVELSDLQKMFTTLCE 63 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 P S + ++ ++ + + ++ + NP +E PK + T ++ + Sbjct: 64 MGIHPRSQARIISGIKSFYYFLELEDQITNNPTEYLESPKVGRKLPEFLTVNEINSIIAT 123 Query: 186 W----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPD 239 G + R E L GLR S+ + I K V + + Sbjct: 124 IDLSKPNGQRNRAIIETLYSCGLRISELVKLSFSDFFPDEGFLKIN-GKGNKQRIVPISN 182 Query: 240 GFMKLLAMTPIGKET----------FFINNDKQKMNATQFSIWFKAKATKAGVNK--SAH 287 +K + + I ++ F+N +++ K +AG+ K S H Sbjct: 183 SAIKEIQLYLIDRQRSSIEKEFENIIFLNRRGTRLSRVMVFYLVKGCTVQAGIKKNVSPH 242 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 R AT + GA + A G + + E YT Sbjct: 243 TFRHSFATHLLEGGANLRAIQAMLGHENITTTEIYTH 279 >gi|306836032|ref|ZP_07469022.1| tyrosine recombinase XerD [Corynebacterium accolens ATCC 49726] gi|304568059|gb|EFM43634.1| tyrosine recombinase XerD [Corynebacterium accolens ATCC 49726] Length = 296 Score = 137 bits (345), Expect = 3e-30, Method: Composition-based stats. Identities = 48/261 (18%), Positives = 90/261 (34%), Gaps = 22/261 (8%) Query: 90 NSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS--SAIQFLTSMRVLFKWA 147 N R Y D + G D R++T + + ++ + + SA + L R L K+A Sbjct: 28 NYRRDIRRYVDWLADN-GVQDLRQVTRPMVEAYLKDLREKMAVSSANRALIVARGLHKFA 86 Query: 148 VRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSG 203 V + V + V P + +++ + + + R E L +G Sbjct: 87 VAEGEVDSDVAAEVSPPSTGQHLPETLSVDEVSRLIESTPTETPVDLRDRALLEVLYGTG 146 Query: 204 LRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAM---------TPIGK 252 R S+ V + +++ + K V L + + Sbjct: 147 ARISEVISLNVDDVATADDVLMLH-GKGDKERLVPLGSHARQAIDAYLVRARPVLGKGKT 205 Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMAT 310 F+N ++ K A ++ ++KS H +R AT + GA + Sbjct: 206 AALFLNTRGGALSRQSAWSIIKTAAQRSQLDKSISPHTLRHSFATHLLEGGADVRTVQEL 265 Query: 311 YGWKTVDQAETYTK-GADRIR 330 G +V + YT AD +R Sbjct: 266 LGHSSVTTTQIYTHVTADSLR 286 >gi|91226786|ref|ZP_01261439.1| tyrosine recombinase [Vibrio alginolyticus 12G01] gi|269964519|ref|ZP_06178759.1| tyrosine recombinase [Vibrio alginolyticus 40B] gi|91188917|gb|EAS75201.1| tyrosine recombinase [Vibrio alginolyticus 12G01] gi|269830756|gb|EEZ84975.1| tyrosine recombinase [Vibrio alginolyticus 40B] Length = 305 Score = 137 bits (345), Expect = 3e-30, Method: Composition-based stats. Identities = 47/278 (16%), Positives = 102/278 (36%), Gaps = 26/278 (9%) Query: 74 LISEYRKSAHW--GSLAVNSRISFESYFDQIIRKSGDFDYRKITT-----KHIRSGVESR 126 L+ ++ A W L+ N+ S+ + +++ YR + +S + Sbjct: 14 LVEQFL-DAMWMERGLSENTLASYRNDLMKLLVWMEKHRYRLDFISLSGLQEYQSHLVDL 72 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF- 185 + +S + L+++R LF++ R++ A +P + PK + ++E + Sbjct: 73 DYKQTSRARMLSAIRRLFQYLHREKVRADDPSALLVSPKLPQRLPKDISEEQVDALLEAP 132 Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGF 241 + + E L +GLR ++ ++++ ++ T K G V + + Sbjct: 133 DPNDPIELRDKAMLELLYATGLRVTELVSLTMENVSLRQGVVRVTGKGGKERLVPMGENA 192 Query: 242 MKLLAM----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHG 288 + + + F + ++M F K A AG++ S H Sbjct: 193 VDWIETFIQQGRPALLGDTSSDIVFPSKRARQMTRQTFWHRIKYYALIAGIDTDQLSPHV 252 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 +R AT + GA + G + + YT A Sbjct: 253 LRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVA 290 >gi|305667659|ref|YP_003863946.1| putative tyrosine recombinase [Maribacter sp. HTCC2170] gi|88709709|gb|EAR01942.1| putative tyrosine recombinase [Maribacter sp. HTCC2170] Length = 298 Score = 137 bits (345), Expect = 3e-30, Method: Composition-based stats. Identities = 49/278 (17%), Positives = 96/278 (34%), Gaps = 27/278 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFD----YRKITTKHIRSGVESRKHT--PSSAIQFLT 138 L+ NS ++ ++++ D KI + +++ + T P S + ++ Sbjct: 18 RGLSDNSIKNYVWDVEKLVGFLDVNDMVISPIKIDKETVQAFIYEIAKTINPRSQARIIS 77 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRL 194 ++ F + ++Y NP +E PK + +++++ Q EG + R Sbjct: 78 GLKSFFNYLNFEDYRQDNPMDLLESPKIGRKLPDTLSEDEINQLIDAIDLSKPEGERNRA 137 Query: 195 AFEFLLYSGLRCSDSCRAGVQH--LQNNIFSIKTQKTGTIITVELPD-----------GF 241 E L GLR S+ + + + + T K V + D Sbjct: 138 MLETLYGCGLRVSELIGLKISDLFFEEDFIKV-TGKGNKQRFVPISDFNKKYINIYRKEI 196 Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISAD 299 + + F+N +++ K A K + KS H R AT Sbjct: 197 RVHQKIQKGFDDILFLNRRGKQLTRAMIFTIIKQLAVKIDLGKSISPHTFRHSFATHLLQ 256 Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 GA + G +++ E Y DR L ++ Sbjct: 257 NGADLRAIQQMLGHESITTTEVYMH-VDRTHLADVMNK 293 >gi|74318396|ref|YP_316136.1| tyrosine recombinase XerD [Thiobacillus denitrificans ATCC 25259] gi|74057891|gb|AAZ98331.1| tyrosine recombinase XerD [Thiobacillus denitrificans ATCC 25259] Length = 296 Score = 137 bits (345), Expect = 3e-30, Method: Composition-based stats. Identities = 51/285 (17%), Positives = 101/285 (35%), Gaps = 27/285 (9%) Query: 72 KWLISEYRKSAHWGS-LAVNSRISFESYFDQIIRKSGDFDYRKITT------KHIRSGVE 124 LI + LA + ++ R + + Sbjct: 3 DALIDRFCDHLWLEDGLAELTLAAYRRDLRSFAGWLDKTRARSLDAVAPGDVEAYLGWRF 62 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 + P SA ++ ++++ +++ +R+ +A +P L+++RPK ++ D+++ Sbjct: 63 AHHVGPRSAARYTSALKRFYRYLLRENLIAADPTLNLDRPKLPRALPASLSETDVERLLE 122 Query: 185 FW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQKTGTIITVELP 238 +G + R E L +GLR S+ + +L + + + T K V L Sbjct: 123 RADSDTPQGLRDRAMLETLYATGLRVSELVGLKLNALNLDDGVLRV-TGKGNKDRLVPLG 181 Query: 239 DGFMKLLAMTPIGK----------ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SA 286 + ++ L + F+ M F K +A AGV + S Sbjct: 182 EEAVRRLRHYLAEARSQLLRRQVSDAVFVTPRGAAMTRQAFWYLIKRRAAAAGVTRQLSP 241 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 H +R AT + GA + G + + YT A R R+ Sbjct: 242 HTLRHAFATHLLNHGADLRVVQMLLGHSDISTTQIYTHVA-RERM 285 >gi|308174137|ref|YP_003920842.1| site-specific tyrosine recombinase [Bacillus amyloliquefaciens DSM 7] gi|307607001|emb|CBI43372.1| site-specific tyrosine recombinase for chromosome partitioning [Bacillus amyloliquefaciens DSM 7] gi|328554079|gb|AEB24571.1| site-specific tyrosine recombinase XerD [Bacillus amyloliquefaciens TA208] gi|328912472|gb|AEB64068.1| site-specific tyrosine recombinase for chromosome partitioning [Bacillus amyloliquefaciens LL3] Length = 296 Score = 137 bits (345), Expect = 3e-30, Method: Composition-based stats. Identities = 46/271 (16%), Positives = 101/271 (37%), Gaps = 25/271 (9%) Query: 85 GSLAVNSRISFESYFDQ----IIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI---QFL 137 L+ N+ +S+E + + +T HI ++ K + S + L Sbjct: 16 RGLSQNTMMSYERDLKSYSLFLTETLQITSWNDVTRLHIIQYLKHLKDSGKSGKTSARHL 75 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPR 193 S+R ++ +R++ +P + +E K + + +++++ G + + Sbjct: 76 ASIRSFHQFLLREKAADKDPSVHIETQKTERALPKVLALQEVERLLDTPKLDSPFGLRDK 135 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAM---TP 249 E L +G+R S+ + + + ++ K V + + + Sbjct: 136 AMLELLYATGIRVSEMIELKLSDVHLTMGFVRCFGKGRKERIVPIGEAASHAIEAYIEKA 195 Query: 250 IGK-------ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300 GK E F+N+ ++++ F K A +AG+ K + H +R AT + Sbjct: 196 RGKLLKKNVTEALFLNHHGRQISRQGFWKNLKKIALEAGIKKELTPHTLRHSFATHLLEN 255 Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRL 331 GA + G + + YT + RL Sbjct: 256 GADLRAVQEMLGHADISTTQIYTH-VSKTRL 285 >gi|237729834|ref|ZP_04560315.1| site-specific tyrosine recombinase XerD [Citrobacter sp. 30_2] gi|226908440|gb|EEH94358.1| site-specific tyrosine recombinase XerD [Citrobacter sp. 30_2] Length = 298 Score = 137 bits (345), Expect = 3e-30, Method: Composition-based stats. Identities = 42/265 (15%), Positives = 89/265 (33%), Gaps = 23/265 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDF-----DYRKITTKHIRSGVESRKHTPSSAIQFLTS 139 +LA N+ ++ ++ + + + + + +S+ + L++ Sbjct: 19 RNLAENTLSAYRRDLTMLVEWLHHRGASLATAQSDDLQALLAERMDGGYKATSSARLLSA 78 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195 R F+ R++Y +P S+ PK + ++ +++ + + Sbjct: 79 TRRFFQHLYREKYREDDPSASLASPKLPQRLPKDLSEAQVERLLQAPLIEQPLELRDKAM 138 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGKET 254 E L +GLR S+ + + ++ K V L + + L Sbjct: 139 LEVLYATGLRVSELVGLTMSDVSLRQGVVRVIGKGNKERLVPLGEEAVYWLETYLEHGRP 198 Query: 255 FFIN----------NDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAG 301 + +N Q+M F K A AG++ S H +R AT + G Sbjct: 199 WLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHAFATHLLNHG 258 Query: 302 ATAHELMATYGWKTVDQAETYTKGA 326 A + G + + YT A Sbjct: 259 ADLRVVQMLLGHSDLSTTQIYTHVA 283 >gi|218706400|ref|YP_002413919.1| site-specific tyrosine recombinase XerD [Escherichia coli UMN026] gi|293406393|ref|ZP_06650319.1| xerD [Escherichia coli FVEC1412] gi|298382129|ref|ZP_06991726.1| tyrosine recombinase xerD [Escherichia coli FVEC1302] gi|300896210|ref|ZP_07114759.1| tyrosine recombinase XerD [Escherichia coli MS 198-1] gi|301027413|ref|ZP_07190750.1| tyrosine recombinase XerD [Escherichia coli MS 69-1] gi|218433497|emb|CAR14400.1| site-specific tyrosine recombinase [Escherichia coli UMN026] gi|291426399|gb|EFE99431.1| xerD [Escherichia coli FVEC1412] gi|298277269|gb|EFI18785.1| tyrosine recombinase xerD [Escherichia coli FVEC1302] gi|300359944|gb|EFJ75814.1| tyrosine recombinase XerD [Escherichia coli MS 198-1] gi|300394921|gb|EFJ78459.1| tyrosine recombinase XerD [Escherichia coli MS 69-1] Length = 298 Score = 137 bits (345), Expect = 3e-30, Method: Composition-based stats. Identities = 43/270 (15%), Positives = 95/270 (35%), Gaps = 24/270 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGD-----FDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139 +LA N+ ++ ++ + + + + + +S+ + L++ Sbjct: 19 KNLAENTLNAYRRDLSMMVEWLHHRGSTLATAQSDDLQALLAERLEGGYKATSSARLLSA 78 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195 +R LF++ R+++ +P + PK + ++ +++ + + Sbjct: 79 VRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLIDQPLELRDKAM 138 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGKET 254 E L +GLR S+ + + ++ K V L + + L Sbjct: 139 LEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVYWLETYLEHGRP 198 Query: 255 FFIN----------NDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAG 301 + +N Q+M F K A AG++ S H +R AT + G Sbjct: 199 WLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHAFATHLLNHG 258 Query: 302 ATAHELMATYGWKTVDQAETYTKGA-DRIR 330 A + G + + YT A +R+R Sbjct: 259 ADLRVVQMLLGHSDLSTTQIYTHVATERLR 288 >gi|78357014|ref|YP_388463.1| tyrosine recombinase XerD subunit [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78219419|gb|ABB38768.1| tyrosine recombinase XerD subunit [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 309 Score = 137 bits (345), Expect = 3e-30, Method: Composition-based stats. Identities = 43/260 (16%), Positives = 83/260 (31%), Gaps = 20/260 (7%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDF-----DYRKITTKHIRSGVESRKHTPSSAIQFLTS 139 L+ N+ S+ + + D + + R + S + L + Sbjct: 29 RGLSENTLSSYGTDLQSFLDFLHHKKSRLEDVTDQSLLLYIMHLRRRGLSSKSLARQLAA 88 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS----FWSEGSQPRLA 195 +R LF++ Q ++ NPC +E PK +++++ + + G + R Sbjct: 89 LRGLFRYGTEQNLLSENPCRFLENPKIPKSLPEYLSQQEIAEVLAQPDLKEKLGFRDRTM 148 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG--------FMKLLA 246 E L +GLR S+ ++ K TV + Sbjct: 149 LELLYAAGLRVSELITLKPLDFDPLTGLVRVFGKGAKERTVPVHATAARFLGAYLRDWRP 208 Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATA 304 + F+N + + + AG+++ S H R AT + GA Sbjct: 209 AFKPVENILFLNRSGKGLTRQAVWKIVRRHVADAGIHRQISPHTFRHSFATHLLEGGADL 268 Query: 305 HELMATYGWKTVDQAETYTK 324 + G + E YT Sbjct: 269 RTVQLLLGHADIAATEIYTH 288 >gi|223041687|ref|ZP_03611883.1| site-specific recombinase XerD [Actinobacillus minor 202] gi|223017496|gb|EEF15911.1| site-specific recombinase XerD [Actinobacillus minor 202] Length = 301 Score = 137 bits (345), Expect = 3e-30, Method: Composition-based stats. Identities = 46/289 (15%), Positives = 95/289 (32%), Gaps = 24/289 (8%) Query: 66 KKPTTLKWLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH----IR 120 K +L ++ ++ + L+ N+ S+ + + H Sbjct: 3 KSAPSLDPIVEQFLDTLWQEHGLSDNTVSSYRLDLILFMEWLDESRAFLTIDHHALQEFL 62 Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 + + SS+++ L+ +R F++ + Y +P + P++ + + +E + Sbjct: 63 GYRFDQGYKASSSLRMLSCLRKFFRFLYLENYRKDDPTAMLVAPRKPSRLPKTLNEEQVM 122 Query: 181 QFKS----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITV 235 + + E L +GLR ++ ++L ++ K V Sbjct: 123 DLLDCPNPLDPIELRDKAMLELLYATGLRVTELISLTTENLSLRQGVVRIIGKGDKERLV 182 Query: 236 ELPDGFMKLLAMTPIGKETFFINN----------DKQKMNATQFSIWFKAKATKAGVN-- 283 L + + +NN Q M F K A AG++ Sbjct: 183 PLGEEASYWIQEFFQYGRGILLNNEPSSIVFPSKRGQMMTRQTFWHRIKHYAVLAGIDSE 242 Query: 284 -KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 S H +R AT + GA + G + + YT A + RL Sbjct: 243 KLSPHVLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVA-KARL 290 >gi|238920128|ref|YP_002933643.1| site-specific recombinase, phage integrase family [Edwardsiella ictaluri 93-146] gi|238869697|gb|ACR69408.1| site-specific recombinase, phage integrase family [Edwardsiella ictaluri 93-146] Length = 336 Score = 137 bits (344), Expect = 3e-30, Method: Composition-based stats. Identities = 65/334 (19%), Positives = 112/334 (33%), Gaps = 35/334 (10%) Query: 7 LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66 +PP V G+ Y F +G IRL + +A +R Sbjct: 13 MPPRVYM-----GRSAYEFHPINGGNIRLCDKTATQ--AQVWAAWEALINERPD------ 59 Query: 67 KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126 TTL L+ + KSA + LAV ++ + Y +I+ G I +H+R ++ R Sbjct: 60 -TTTLAGLVERFLKSADFFGLAVETQKDYHKYSQKILSVFGKMPPDAIRPEHVRRYMDKR 118 Query: 127 KHTPSS-AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + A + + M +++WA + YV NP V + K R T ++ Sbjct: 119 GLRSHTQANREKSFMSRVYRWAYERGYVKGNPTKGVRQFKEPGR-DRYITHQEYLALYGV 177 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245 S+ R+A E R D IK KT + + Sbjct: 178 TSD--VVRVAMELAYLCCARQKDVLNMMKSQFLPEGILIKQSKTAVGQIKAWSPRLREAI 235 Query: 246 AMTPI-----GKETFFI--NNDKQKMNATQFSIWFKAKATKAG-------VNKSAHGVRK 291 + G+ T ++ K + F+ ++ A N + H ++ Sbjct: 236 KLASTLPLDSGRSTLYVIHQRSGDKYSRHGFNSRWRQAKKAAKKRYPELDFNFTFHDLKA 295 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKG 325 + +E A G K V+Q Y + Sbjct: 296 KGISDLK---GNIYEKQAISGHKNVEQTARYNRK 326 >gi|283798528|ref|ZP_06347681.1| integrase/recombinase XerD [Clostridium sp. M62/1] gi|291073790|gb|EFE11154.1| integrase/recombinase XerD [Clostridium sp. M62/1] gi|295090134|emb|CBK76241.1| tyrosine recombinase XerD subunit [Clostridium cf. saccharolyticum K10] Length = 287 Score = 137 bits (344), Expect = 3e-30, Method: Composition-based stats. Identities = 44/263 (16%), Positives = 89/263 (33%), Gaps = 22/263 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDF------DYRKITTKHIRSGVESRKHTPSSAIQFLT 138 ++ N+ +S+ Q D K + +E ++ + L Sbjct: 16 KKMSQNTILSYRRDLLQFASYMADRGVAEAGKVTKTSLDSYILFLEREGKAAATISRMLA 75 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS----FWSEGSQPRL 194 S++ F + + Y+ NP + PK + + + E++ + + + + + Sbjct: 76 SIKAFFHYESTEGYIKRNPAEMIRAPKIEKKAPSILSVEEVTRLLNQPGGRTPKEIRDKA 135 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE--------LPDGFMKLLA 246 E L +G+R S+ + H+ I I +G T+ L D Sbjct: 136 MLELLYATGIRVSELMNLNLHHINMTIGFITCSDSGRERTIPFGRVAKKALDDYLKNSRP 195 Query: 247 MTPIGKET--FFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGA 302 KE+ F+N +M+ F K KAG+ + + H +R A +GA Sbjct: 196 ELTKKKESDWLFVNCSGGQMSRQGFWKIIKYYGEKAGIQTDITPHTLRHSFAAHLISSGA 255 Query: 303 TAHELMATYGWKTVDQAETYTKG 325 + G + + Y Sbjct: 256 DMKAVQQILGHSDMATTQMYAAY 278 >gi|167041136|gb|ABZ05896.1| putative Phage integrase family protein [uncultured marine microorganism HF4000_001A02] Length = 298 Score = 137 bits (344), Expect = 3e-30, Method: Composition-based stats. Identities = 49/265 (18%), Positives = 91/265 (34%), Gaps = 25/265 (9%) Query: 85 GSLAVNSRISFESYFD----QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQF---L 137 +LA NS S+E + + R +T HIRS V + +A + Sbjct: 16 RNLARNSLESYERDLQQYHQYLKTELKLKTIRNVTLGHIRSFVRKLSNRGLAANSIKRAV 75 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPR 193 +S+R + + ++ NP ++ PK + T +++ + E + + Sbjct: 76 SSIRTYHNFLSAEGHMKDNPAQLLDTPKIPRKLPNVLTIQEIDKILGIIPENAPMAQRDL 135 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLL------- 245 FE + GLR ++ C + ++ K V + + L Sbjct: 136 AIFEMMYSCGLRVTELCDFKTSDILWDSEMIRVQGKGSKQRFVPIGPIARENLKNYLNHE 195 Query: 246 AMTPIGKET----FFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299 T K F++ + +K+ + K A V K S H +R AT + Sbjct: 196 RNTLADKNPNVAEVFLSRNGRKLTRMMIWVLLKKWTESAEVKKEVSPHTLRHSFATHLLE 255 Query: 300 AGATAHELMATYGWKTVDQAETYTK 324 GA + G + + YT Sbjct: 256 GGADLRSVQEMLGHTDITTTQVYTH 280 >gi|52424801|ref|YP_087938.1| site-specific tyrosine recombinase XerD [Mannheimia succiniciproducens MBEL55E] gi|52306853|gb|AAU37353.1| XerC protein [Mannheimia succiniciproducens MBEL55E] Length = 298 Score = 137 bits (344), Expect = 3e-30, Method: Composition-based stats. Identities = 46/285 (16%), Positives = 99/285 (34%), Gaps = 27/285 (9%) Query: 72 KWLISEYRKSAHW--GSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGVESR- 126 LI + W L+ N+ S+ + + + + + +++ + R Sbjct: 5 SALIELFLNEL-WLGKGLSDNTVQSYRLDLTALSQWLQGQGKSLETLDSSDLQAFLGERV 63 Query: 127 --KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----Q 180 + +S + L++MR LF++ ++ Y +P + PK + T++ + Sbjct: 64 DQGYKATSTARMLSAMRKLFQYLYQESYRTDDPSAILSSPKLPGRLPKYLTEQQVGDLLN 123 Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPD 239 + + + E L +GLR ++ ++ ++ K V + + Sbjct: 124 APSTDIPLELRDKAMLELLYATGLRVTELVTLSTDNINLEQGVVRVIGKGNKERIVPMGE 183 Query: 240 GF-----MKLLAMTPI-----GKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSA 286 +L P+ + F + +M F K A A ++ S Sbjct: 184 EASYWVGQFILYGRPMLLNGQSSDVIFPSKRALQMTRQTFWHRIKHYAILADIDTDSLSP 243 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 H +R AT + GA + G + + YT A + RL Sbjct: 244 HVLRHAFATHLVNHGADLRVVQMLLGHSDLSTTQIYTHVA-KERL 287 >gi|221211426|ref|ZP_03584405.1| tyrosine recombinase XerD [Burkholderia multivorans CGD1] gi|221168787|gb|EEE01255.1| tyrosine recombinase XerD [Burkholderia multivorans CGD1] Length = 316 Score = 137 bits (344), Expect = 3e-30, Method: Composition-based stats. Identities = 49/268 (18%), Positives = 90/268 (33%), Gaps = 22/268 (8%) Query: 85 GSLAVNSRISFES---YFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSSAIQFLTSM 140 LA N+ ++ F Q + + D + + +R +S+ + L+ Sbjct: 39 HGLARNTLDAYRRDLTLFSQWLAATHDAALDAADETMLTGYIAARSDGKATSSNRRLSVF 98 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAF 196 R + WAVR+ + +P L + K+ ++ ++ G + R Sbjct: 99 RRYYGWAVREHRASADPTLRIASAKQAARFPSTLSEAQVEALLGAPDIATPLGLRDRTML 158 Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------ELPDGFMKLLAM 247 E + SGLR S+ + N ++ G+ + + + Sbjct: 159 ELMYASGLRVSELVTLKTVEVGLNEGVVRVMGKGSKERLVPFGEVAHGWIERYLREARPA 218 Query: 248 T--PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGAT 303 + F+ M QF K A +A V + S H +R AT + GA Sbjct: 219 LLGARAADALFVTARGDGMTRQQFWNIIKRHAQQADVRAHLSPHTLRHAFATHLLNHGAD 278 Query: 304 AHELMATYGWKTVDQAETYTKGADRIRL 331 + G + + YT A R RL Sbjct: 279 LRVVQLLLGHADISTTQIYTHVA-RERL 305 >gi|261856623|ref|YP_003263906.1| tyrosine recombinase XerD [Halothiobacillus neapolitanus c2] gi|261837092|gb|ACX96859.1| tyrosine recombinase XerD [Halothiobacillus neapolitanus c2] Length = 311 Score = 137 bits (344), Expect = 3e-30, Method: Composition-based stats. Identities = 44/273 (16%), Positives = 86/273 (31%), Gaps = 22/273 (8%) Query: 86 SLAVNSRISFES-----YFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSM 140 L+ N++ ++ S D + + S + S + +S+ Sbjct: 34 GLSKNTQSAYRSDLRLAALDWQRAGLRLNEVSAEDLPRLLGERMSSGQSARSIARLRSSL 93 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAF 196 + F W +Q +P ++ P+ ++ ++++ + G + R Sbjct: 94 KRFFGWLRQQNLRTDDPTTALAAPRLPRALPYALSENEVERLLAAPDVSEPIGLRDRAML 153 Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLAMTPIGKET- 254 E L SGLR ++ + ++ T K V + D + L+ + Sbjct: 154 ELLYASGLRVTELIGLQFGQINLVQGVLRITGKGNKDRLVPIGDEAIVWLSRYLREARSG 213 Query: 255 ---------FFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGAT 303 F+ M F K A AG+ + S H +R AT + GA Sbjct: 214 LLGRRESANVFVTERGDGMTRQAFWYRIKHHALAAGLARLPSPHTLRHAFATHLLNHGAD 273 Query: 304 AHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336 L G + + YT A + Sbjct: 274 LRVLQMLLGHADLSTTQIYTHVATTRLKALHAQ 306 >gi|206896382|ref|YP_002246413.1| tyrosine recombinase XerD [Coprothermobacter proteolyticus DSM 5265] gi|206738999|gb|ACI18077.1| tyrosine recombinase XerD [Coprothermobacter proteolyticus DSM 5265] Length = 288 Score = 137 bits (344), Expect = 3e-30, Method: Composition-based stats. Identities = 57/278 (20%), Positives = 99/278 (35%), Gaps = 26/278 (9%) Query: 59 EYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH 118 EY+ K P T+K IS+ + W + + +I + Sbjct: 7 EYLVKKGKSPHTIKNYISDLMQFQKWFEESTG-------------EQFSPGKITEIDVRS 53 Query: 119 IRSG-VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177 RS + R+ PSS + L ++R W V+Q+ ++ NP VE P T R +++ Sbjct: 54 YRSYLINIRQLKPSSIKRKLEAIRKFLDWTVKQDIISKNPAKEVEAPASVTLPPRSLSEK 113 Query: 178 DMQQFKSFWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGT 231 + + + + + R FE L +G+R S+ C + + + ++ K Sbjct: 114 EFLRLRRSFYKEGNERDIAIFEVLANTGIRVSELCSLKLSDVQISERKGKLIVRYGKGQK 173 Query: 232 IITVELPDGFMKLL-----AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA 286 V L K L + E F+ + + K A AGV S Sbjct: 174 YREVPLNSDARKALNEYLKSRADENNERLFLGERG-PLTPSGVFRIIKRYARDAGVEVSP 232 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R A +GA + G ++ Y K Sbjct: 233 HQLRHTFARRLLQSGADIVTVQQILGHANLNTTAVYLK 270 >gi|241766196|ref|ZP_04764098.1| tyrosine recombinase XerD [Acidovorax delafieldii 2AN] gi|241363726|gb|EER59095.1| tyrosine recombinase XerD [Acidovorax delafieldii 2AN] Length = 299 Score = 137 bits (344), Expect = 3e-30, Method: Composition-based stats. Identities = 49/275 (17%), Positives = 99/275 (36%), Gaps = 24/275 (8%) Query: 86 SLAVNSRISFESYFD----QIIRKSGDFDYRKITTKHIRSGVESR--KHTPSSAIQFLTS 139 LA N+ ++ + ++ H+++ R + +SA + LT Sbjct: 21 GLARNTLAAYRRDLTLYATWLAQQQPALALDSTAEHHLQAYFAERHAQTRATSANRRLTV 80 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLA 195 +R F WA+R+ ++ +P + ++ ++ + ++ ++ + GS + R Sbjct: 81 LRRYFHWALRERRISADPTVRLQAARQPLRVPKTLSQAQVEALLNAPDVGSALGLRDRTM 140 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------ELPDGFMKLLA 246 E + SGLR ++ L ++ G+ + + + Sbjct: 141 LELMYASGLRVTELVTLKTYQLGLAEGVLRVMGKGSKERLVPFGEEARNWIERYLHEARG 200 Query: 247 MTPIGKET--FFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGA 302 G++T F+ + M F + K A AG+ S H +R AT + GA Sbjct: 201 AILGGQQTDDLFVTHRGAGMTRVMFWVIVKKWAAVAGITVPLSPHTLRHAFATHLLNHGA 260 Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 + G + YT A R RL + R Sbjct: 261 DLRVVQLLLGHVDISTTTIYTHVA-RERLKALHER 294 >gi|288553931|ref|YP_003425866.1| site-specific integrase [Bacillus pseudofirmus OF4] gi|288545091|gb|ADC48974.1| site-specific integrase [Bacillus pseudofirmus OF4] Length = 348 Score = 137 bits (344), Expect = 3e-30, Method: Composition-based stats. Identities = 58/314 (18%), Positives = 104/314 (33%), Gaps = 40/314 (12%) Query: 51 LTGSTPKREYINSP-RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF----DQIIRK 105 G + K E RK L L +Y S A + S+ + + + Sbjct: 4 RAGKSVKNERSGIEWRKSIYDLDALFEKYYDSKVAEGRAEGTLKSYRRVYGVFSEYLTNN 63 Query: 106 SGDFDYRKITTKHIRS----------GVESRKHTP----------SSAIQFLTSMRVLFK 145 D R I T +R + KH P S + +++ F Sbjct: 64 DVQLDIRAIETDTVRGFVAWLLRERIRWDGHKHKPEYVQTKGLSPRSVNDHIKTLKTFFS 123 Query: 146 WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF----KSFWSEGSQPRLAFEFLLY 201 + V ++ NP V++ ++ + I T ++++ + + FLL Sbjct: 124 FLVDEDLADFNPVSKVKKVRQIEKEIDVLTVDELKALMSVPYHRKYADFRDYVIMTFLLD 183 Query: 202 SGLRCSDSCRAGVQHLQ--NNIFSIKTQ--KTGTIITVELPDGFMKLLAMTPI-----GK 252 + R ++ C + + +N I+ + KT V +LL Sbjct: 184 TMCRINEVCTLRKRDIDFKDNTVHIRAEITKTRKGRHVPFQKRTARLLKELIKEVDVFDS 243 Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMAT 310 E F++N +++ F K A KAG+ + H R AT+ +AG L Sbjct: 244 EYIFLSNYGEQLEPNHFRSRLKGFAKKAGIERNVHPHLFRHTGATMFLEAGGDIRHLQLI 303 Query: 311 YGWKTVDQAETYTK 324 G + YT Sbjct: 304 LGHADLRMTTRYTH 317 >gi|33600646|ref|NP_888206.1| integrase [Bordetella bronchiseptica RB50] gi|33568246|emb|CAE32158.1| integrase [Bordetella bronchiseptica RB50] Length = 319 Score = 137 bits (344), Expect = 3e-30, Method: Composition-based stats. Identities = 55/326 (16%), Positives = 107/326 (32%), Gaps = 35/326 (10%) Query: 7 LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66 +PP V ++ HG YY + G R+ P T EY Sbjct: 1 MPPCVYEK---HG-AYYYVKGGKWTRLAADLP----------------TALAEYARRFDN 40 Query: 67 KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126 + L+ + L+ N+ ++ +I +F ++ KH+ + Sbjct: 41 PRGGMADLVEKVLTQVS-PKLSPNTIQQYKIAAARIKDAFAEFAPDQVRPKHVAALKVDM 99 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 TP+ A + L+ ++ +F +AV + V NPC+ ++R R T + + Sbjct: 100 ADTPNMANRVLSFLKTVFVYAVEWQLVDSNPCIGIKRHNEGKRK-RYITDAEYAAI--YH 156 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL-L 245 + ++ + L +G R D L + + +KTG + V + Sbjct: 157 HANPRMQVIMDLLYLTGQRVGDVLAIKRSDLTEDGIVFEQEKTGAKLLVRWVPELRDAVV 216 Query: 246 AMTPIGKETF---FINNDKQKMNATQFSI---WFKAKATKAGV-NKSAHGVRKFSATISA 298 + A + ++ AGV + + H +R S T + Sbjct: 217 RANALNGNVLAPTLFRTRSHGKGAPSYGTTRDRWREAVEAAGVQDANIHDIRAKSLTDAK 276 Query: 299 DAGATAHELMATYGWKTVDQAETYTK 324 G A G + + Y + Sbjct: 277 RQGKDA---QLLAGHASPAMTDRYIR 299 >gi|206900840|ref|YP_002251182.1| tyrosine recombinase XerD [Dictyoglomus thermophilum H-6-12] gi|206739943|gb|ACI19001.1| tyrosine recombinase XerD [Dictyoglomus thermophilum H-6-12] Length = 296 Score = 137 bits (344), Expect = 3e-30, Method: Composition-based stats. Identities = 43/264 (16%), Positives = 92/264 (34%), Gaps = 19/264 (7%) Query: 85 GSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGVES--RKHTPSSAIQFLTSM 140 +++ + S+ + I + + + + + + + + +K+ S + ++S+ Sbjct: 16 KNMSSATIDSYRRDLEDFINFLQKEGINIKNLKREEWQRYLVALYKKYKIKSIARKISSI 75 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRLAF 196 R K+ +R+ Y+ N + PK ++++ F G + Sbjct: 76 RSFIKFLLREGYINKNYSNFMLIPKIPMYLPEVLDPKEIESFLKIPDPLSPLGIRNMAIL 135 Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAM-------- 247 E +G+R S+ +Q++ ++ K V L D ++ L Sbjct: 136 ETFYATGIRVSELVNLNIQNVDLEEKYVRCFGKGEKERIVPLGDYAVESLKRYLSVRHLF 195 Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAH 305 P KE F+N +++ KA + G+ K S H R AT GA Sbjct: 196 NPKDKEALFLNKKGERITRQGVWFIIKAYSKILGLPKKVSPHTFRHSFATHLLSNGADIR 255 Query: 306 ELMATYGWKTVDQAETYTKGADRI 329 + G + + YT Sbjct: 256 IVQELLGHSDIATTQIYTHIVSSK 279 >gi|253990617|ref|YP_003041973.1| phage integrase [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253782067|emb|CAQ85231.1| Putative phage integrase [Photorhabdus asymbiotica] Length = 345 Score = 137 bits (344), Expect = 3e-30, Method: Composition-based stats. Identities = 65/335 (19%), Positives = 119/335 (35%), Gaps = 37/335 (11%) Query: 6 RLPPFVTKERTRHGKIIYYFRKGHGRRIRL-PYPHESTFIPAYMSALTGSTPKREYINSP 64 +LP V+K K YY + + I L P + + G ++ I Sbjct: 12 KLPTRVSKT-----KYSYYLKTKDNKTIMLGPLTMS---MTELWAKYDGEIANKKIIM-- 61 Query: 65 RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124 T L + S + L+ S+ I++ G + I ++IR ++ Sbjct: 62 -----TFSKLWGMHLNSPAFTELSARSQKDKLQGAKNILKVFGHINVDNIKPEYIRQYMD 116 Query: 125 SRK-HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 R + + A L+ M V F W + Y INPC V++ K + T E+ ++ Sbjct: 117 IRGTQSKTQANHELSYMSVAFGWGYERGYCKINPCSGVKKFSLKNR-DKYITDEE---YQ 172 Query: 184 SFWSEGSQ-PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242 + GS ++A E R D + + IK KTG + D Sbjct: 173 ITYDVGSPIVKIAMEISYLCASRIGDILKLKHSQISEQGIYIKQGKTGAKQIKQWTDRLH 232 Query: 243 KLLA-----MTPIGKETF-FINNDKQKMNATQFSIWFKAKATKA------GVNKSAHGVR 290 + + P +++ +N D + + F ++ KA ++ + H + Sbjct: 233 ETINYAVELFPPTSTQSYVILNADGNQFTKSGFDNHWREAKEKAAELLGRKIDFTFHDI- 291 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 K A + + +L G KT Q + Y + Sbjct: 292 KAKAISDFEGSSKDKQL--FSGHKTESQVKVYDRK 324 >gi|229543943|ref|ZP_04433002.1| tyrosine recombinase XerD [Bacillus coagulans 36D1] gi|229325082|gb|EEN90758.1| tyrosine recombinase XerD [Bacillus coagulans 36D1] Length = 297 Score = 137 bits (344), Expect = 3e-30, Method: Composition-based stats. Identities = 43/272 (15%), Positives = 98/272 (36%), Gaps = 26/272 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFD-------YRKITTKHIRSGVESRKHTPSSAIQFL 137 LA N+ S++ +R + + H + ++ + + + + + Sbjct: 16 KGLAENTIASYKRDLHSYLRYLQKVELVTSWNEVTRFHILHFLNFLKQQGKSSKTIARHV 75 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPR 193 S+R ++ +R+++ +P + +E PK + + + ++++ + + Sbjct: 76 ASIRSFHQFLLREKFAGQDPTVHIETPKPERTLPKVLSVQEVEALLAAPKGDTPLHMRDG 135 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAM----- 247 E L +G+R S+ + L ++ IK K + + L Sbjct: 136 AMLELLYATGMRVSEMTGLNLDDLHLSMGFIKCIGKGDKERIIPIGRTASAALERYLKEG 195 Query: 248 ------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299 + F+N+ +++ F KA A KA + K + H +R AT + Sbjct: 196 RPKLVSKTNRTDALFLNHHGARLSRQGFWKILKALAKKANIEKDITPHTLRHSFATHLIE 255 Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRL 331 GA + G + + YT + RL Sbjct: 256 NGADLRAVQEMLGHADISTTQIYTH-VSKTRL 286 >gi|319954373|ref|YP_004165640.1| tyrosine recombinase xerc [Cellulophaga algicola DSM 14237] gi|319423033|gb|ADV50142.1| Tyrosine recombinase xerC [Cellulophaga algicola DSM 14237] Length = 298 Score = 137 bits (344), Expect = 3e-30, Method: Composition-based stats. Identities = 48/274 (17%), Positives = 95/274 (34%), Gaps = 27/274 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGVE--SRKHTPSSAIQFLT 138 L+ NS S+ +++ +I ++ + S+ P S + ++ Sbjct: 18 RGLSENSISSYSLDIQKLLLFLETNKIVTSPIQIDKHIVQQFIYEISKDVNPRSQARIIS 77 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRL 194 ++ F + V ++Y NP +E PK + +++++ + EG + R Sbjct: 78 GLKSFFNYLVFEDYRIDNPLELIESPKTGRKLPDTLSEDEINDLIAAINLSTPEGERNRA 137 Query: 195 AFEFLLYSGLRCSDSCRAGVQH--LQNNIFSIKTQKTGTIITVELPD-----------GF 241 E L G+R S+ + + + + T K V + D Sbjct: 138 ILETLYGCGVRVSELINLKISDLFFEEDFIKV-TGKGDKQRFVPISDINKKYINLYKNEI 196 Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299 L + ++ F+N +++ K A K + K S H R AT + Sbjct: 197 RVHLNIQKGFEDILFLNRRGRQLTRAMIFTIIKQLAIKIDLKKTISPHTFRHSFATHLLE 256 Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 GA + G +++ E Y DR L Sbjct: 257 NGADLRAIQQMLGHESITTTEVYMH-VDRSHLAQ 289 >gi|221633040|ref|YP_002522265.1| tyrosine recombinase xerD [Thermomicrobium roseum DSM 5159] gi|221155467|gb|ACM04594.1| tyrosine recombinase xerD [Thermomicrobium roseum DSM 5159] Length = 331 Score = 137 bits (344), Expect = 3e-30, Method: Composition-based stats. Identities = 48/290 (16%), Positives = 112/290 (38%), Gaps = 25/290 (8%) Query: 65 RKKPTTLKWLISEYR-KSAHWGSLAVNSRISFESYFD----QIIRKSGDFDYRKITTKHI 119 R + ++ I E+ L+ N+ ++ + + + + G D+ ++ ++H+ Sbjct: 12 RVEAGPMQQAIEEFLTGVVRERGLSPNTIAAYRNDLEQFANYVAERFGLRDWSELVSEHL 71 Query: 120 RSGVESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176 + + + ++A + L +++ + VR + NP + P+ R Sbjct: 72 EAFLGYLRDRQYAETTAARKLAAIKSFCHYLVRAGLIGANPADGLPVPRVGRFAPRAIGP 131 Query: 177 EDMQQFKS-----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK-TG 230 ++++Q + EG + R L +GLR S+ V+ + + + ++ G Sbjct: 132 KEVEQLIAAASSDRTPEGLRDRAMLITLATTGLRVSELTALDVRDVDLDRGELIVRRPNG 191 Query: 231 TIITVELPDGFMKLLA----------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKA 280 V L ++ L T G++ F+N+ ++ F + K A A Sbjct: 192 RERVVPLAREAIEALRDYLERGRPGFTTLKGEQALFLNHRGSRLTRQGFWLILKNYAAAA 251 Query: 281 GVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 G+ + + H +R A + G +L G + + Y + +RI Sbjct: 252 GLPEVTPHTLRHSFAVRALVDGWDLRDLQRVLGHVSPATTQVYRQLLERI 301 >gi|167580058|ref|ZP_02372932.1| site-specific tyrosine recombinase XerD [Burkholderia thailandensis TXDOH] Length = 323 Score = 137 bits (344), Expect = 3e-30, Method: Composition-based stats. Identities = 44/272 (16%), Positives = 87/272 (31%), Gaps = 21/272 (7%) Query: 85 GSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIRSGVESRKH-TPSSAIQFLTSM 140 L+ N+ ++ Q + + + + +R +S+ + L+ Sbjct: 46 HGLSRNTLDAYRRDLQLFAQWLAARHAVSLDRTEKPMLEGYIAARSDGKATSSNRRLSVF 105 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAF 196 R + WAVR+ A++P L + K+ ++ ++ + G + R Sbjct: 106 RRYYGWAVREHRAAVDPTLRIASAKQAPRFPSTLSEAQVEALLAAPDVDTPLGLRDRTML 165 Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------ELPDGFMKLLAM 247 E + SGLR S+ + N ++ G+ + + Sbjct: 166 ELMYASGLRVSELVTLKTVEVGLNEGVVRVTGKGSKERLVPFGEVAHGWIERYLRDARPA 225 Query: 248 T--PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGAT 303 + F+ M QF K A +A V + S H +R AT + GA Sbjct: 226 LLGARAADALFVTARGDGMTRQQFWNIIKRHAQQADVRAHLSPHTLRHAFATHLLNHGAD 285 Query: 304 AHELMATYGWKTVDQAETYTKGADRIRLGIKN 335 + G + + YT A + Sbjct: 286 LRVVQLLLGHSDISTTQIYTHVARERLKALHA 317 >gi|284008874|emb|CBA75687.1| phage integrase [Arsenophonus nasoniae] Length = 326 Score = 137 bits (344), Expect = 3e-30, Method: Composition-based stats. Identities = 51/271 (18%), Positives = 98/271 (36%), Gaps = 21/271 (7%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK-H 128 + K L S Y S H+ L++ S+ I++ G+ I +HIR ++ R Sbjct: 50 SFKELWSMYLNSPHFSELSIRSQKDKHQGGKNILKVFGNIHVNNIKPEHIRKYMDIRGTQ 109 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 + + A L+ M V F W + Y NPCL +++ K + T E+ + + Sbjct: 110 SKTQANHELSYMSVTFSWGYERGYCKNNPCLGIKKFSLKNR-DKYITDEE---YNVTYDS 165 Query: 189 GSQ-PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK---- 243 SQ ++A E R D + I+ KTG + + Sbjct: 166 ASQIVKIAMEISYLCASRIGDILELKHNQILEEGIYIRQGKTGVKQIKQWTPRLKETIDY 225 Query: 244 LLAMTPIGK--ETFFINNDKQKMNATQFSIWFKAKATKA------GVNKSAHGVRKFSAT 295 + + P N++ K + F ++ +KA ++ + H ++ + Sbjct: 226 AINLFPPQNIESYVIRNSNGTKFTKSGFDNHWREAKSKATKTLGRNLDFTFHDIKAKGIS 285 Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGA 326 ++ + G KT Q + Y + Sbjct: 286 DFD---GSSKDKQLFSGHKTESQVQIYDRKV 313 >gi|268591702|ref|ZP_06125923.1| tyrosine recombinase XerD [Providencia rettgeri DSM 1131] gi|291312661|gb|EFE53114.1| tyrosine recombinase XerD [Providencia rettgeri DSM 1131] Length = 300 Score = 137 bits (344), Expect = 3e-30, Method: Composition-based stats. Identities = 48/284 (16%), Positives = 99/284 (34%), Gaps = 27/284 (9%) Query: 74 LISEYRKSAHW--GSLAVNSRISFESYFDQI-----IRKSGDFDYRKITTKHIRSGVESR 126 LI ++ + W LA N+ S+ + + + + I + + Sbjct: 9 LIEQFLDTI-WLEQDLAENTLASYRNDLQLLDKWLDAHQLHLESVQSIDLQSFFAERIDC 67 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ----QF 182 + +S+ + L++MR LF++ R++ +P + PK + +++ ++ Sbjct: 68 GYKATSSARLLSAMRRLFQYLYREKIRLDDPSAVIAAPKIPQRLPKDLSEKQVEDLLNAP 127 Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG- 240 + + + + E L GLR S+ + I+ K + L + Sbjct: 128 ATEDALELRDKAMLEVLYACGLRVSELIGLTFSDISLRQGVIRVVGKGDKERLIPLGEEA 187 Query: 241 ---FMKLLAMTPIG------KETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHG 288 K + + F + KM F K A A ++ S H Sbjct: 188 IYWLEKYIDEGRPDLLNGKTSDILFPSKRGTKMTRQTFWHRIKYYAVLAHIDSELLSPHV 247 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRL 331 +R AT + GA + G + + YT A +R+R+ Sbjct: 248 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRV 291 >gi|85059971|ref|YP_455673.1| site-specific tyrosine recombinase XerD [Sodalis glossinidius str. 'morsitans'] gi|84780491|dbj|BAE75268.1| phage integrase [Sodalis glossinidius str. 'morsitans'] Length = 299 Score = 137 bits (344), Expect = 3e-30, Method: Composition-based stats. Identities = 46/284 (16%), Positives = 100/284 (35%), Gaps = 27/284 (9%) Query: 74 LISEYRKSAHW--GSLAVNSRISFESYFDQII-----RKSGDFDYRKITTKHIRSGVESR 126 +I ++ S W +LA N+ S+ + ++ + + + Sbjct: 8 IIEQFLDSL-WLERNLAENTLASYRLDLQALSAWLQSQQRDSLNASSADLQAFLADRLDH 66 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----QQF 182 + +S+ + L++ R F++ R++ +P + PK + ++ + Sbjct: 67 GYKATSSARLLSATRRFFQYLYREKRRGNDPSAGISAPKLPQRLPKDLSEAQVGDLLAAP 126 Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG- 240 + + E L +GLR S+ + + ++ K V L + Sbjct: 127 AIADPVELRDKAMLEVLYATGLRVSELVGLTLSDVSLRQGVVRVIGKGDKERLVPLGEEA 186 Query: 241 ------FMKLLAMTPIGKETF---FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHG 288 +++ ++ F +N +KM F K A AG++ S H Sbjct: 187 VYWIEYYLEHGRPALTHGQSLDILFPSNRSRKMTRQTFWHRIKHYAILAGIDSERLSPHV 246 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRL 331 +R AT + GA + G + + YT A +R++L Sbjct: 247 LRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVATERLKL 290 >gi|291287439|ref|YP_003504255.1| integrase family protein [Denitrovibrio acetiphilus DSM 12809] gi|290884599|gb|ADD68299.1| integrase family protein [Denitrovibrio acetiphilus DSM 12809] Length = 295 Score = 137 bits (344), Expect = 3e-30, Method: Composition-based stats. Identities = 40/265 (15%), Positives = 97/265 (36%), Gaps = 21/265 (7%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA---IQFLTSMR 141 LA NS ++ + I + + + + + + + +S + ++ + Sbjct: 18 MGLAENSVKAYHQDIENYIA-FTLKPLVECGAQELVAYMTHLRKSGASIETVQRRISGIS 76 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRLAFE 197 + + + ++ ++ NP V +P + + +++++ + G + R+ FE Sbjct: 77 RFYDFLIMEKIISSNPVGFVSKPSKWEKLPVFLNFDEVEKLINSPDMSSGLGYRDRIIFE 136 Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLAM--------- 247 + +G+R S+ V + + +K T K V + + + Sbjct: 137 TMYSTGMRISELVGLKVLDMDMHREIMKVTGKGSKQRFVPMYGSLAEKMKTYLDIRHDSL 196 Query: 248 -TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATA 304 + F++ + +K++ + K +AG+ K S H +R AT GA Sbjct: 197 VKERDEGWLFLSRNGKKLDREYVWMIIKKYCERAGIKKNVSPHTLRHSFATHLLTNGADL 256 Query: 305 HELMATYGWKTVDQAETYTKGADRI 329 + G + E YT+ D Sbjct: 257 RTIQVLLGHVDLSTTERYTQVTDNK 281 >gi|167585653|ref|ZP_02378041.1| site-specific tyrosine recombinase XerD [Burkholderia ubonensis Bu] Length = 315 Score = 137 bits (344), Expect = 4e-30, Method: Composition-based stats. Identities = 46/268 (17%), Positives = 86/268 (32%), Gaps = 22/268 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH---IRSGVESRKH-TPSSAIQFLTSM 140 LA N+ ++ + + + + +R +S+ + L+ Sbjct: 38 HGLARNTLDAYRRDLALFAQWLAATHDASLDVADEMMVTGYIAARSDGKATSSNRRLSVF 97 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAF 196 R + WAVR+ + +P L + K+ ++ ++ G + R Sbjct: 98 RRYYGWAVREHRASADPTLRITSAKQAARFPSTLSEAQVEALLGAPDVDTPLGLRDRTML 157 Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------ELPDGFMKLLAM 247 E + SGLR S+ + N ++ G+ + + Sbjct: 158 ELMYASGLRVSELVTLKTVEVGLNEGVVRVMGKGSKERLVPFGEVAHGWIERYLRHARPA 217 Query: 248 T--PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGAT 303 + F+ M QF K A +A V + S H +R AT + GA Sbjct: 218 LLGARAADALFVTARGDGMTRQQFWNIIKRHARQADVRAHLSPHTLRHAFATHLLNHGAD 277 Query: 304 AHELMATYGWKTVDQAETYTKGADRIRL 331 + G + + YT A R RL Sbjct: 278 LRVVQMLLGHSDISTTQIYTHVA-RERL 304 >gi|327253769|gb|EGE65398.1| phage integrase family protein [Escherichia coli STEC_7v] Length = 295 Score = 137 bits (344), Expect = 4e-30, Method: Composition-based stats. Identities = 50/267 (18%), Positives = 91/267 (34%), Gaps = 17/267 (6%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK-H 128 T+ L + S + LA ++ + + ++ G + + +R ++ R Sbjct: 20 TVAKLWHMFMDSPAFTELAPRTQKDYRQHQRALLAVFGKMLADNVKIEQVRIFMDKRGLE 79 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 + + A L S+ ++ W + YV NPC V + K + T E + Sbjct: 80 SKTQANHELASLSRVYGWGYERGYVKNNPCKGVRKFTLKARTVYI-TDEQYAAIYA--EA 136 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT 248 Q R+A E R D Q + + I+ KTGT E + + Sbjct: 137 IPQLRIAMEISYLCAARLGDVLELKWQDIMDKGIYIEQNKTGTKQIKEWSPRLRTAIQLA 196 Query: 249 ----PIGKETFFINNDKQKMNATQFSIWF----KAKATKAGVN--KSAHGVRKFSATISA 298 E K+ A + W+ +A KAGV + H + K Sbjct: 197 RNVSSGTCEYVINTTKGGKVIAKTLNNWWNQAKRAAEQKAGVPFGCNFHDI-KAKGISDY 255 Query: 299 DAGATAHELMATYGWKTVDQAETYTKG 325 + ++ + G KT +Q Y + Sbjct: 256 E--GSSRDKQIFSGHKTENQVLIYDRK 280 >gi|118444203|ref|YP_878098.1| tyrosine recombinase XerD [Clostridium novyi NT] gi|118134659|gb|ABK61703.1| tyrosine recombinase XerD [Clostridium novyi NT] Length = 292 Score = 137 bits (344), Expect = 4e-30, Method: Composition-based stats. Identities = 49/278 (17%), Positives = 103/278 (37%), Gaps = 20/278 (7%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQII-----RKSGDFDYRKITTKHIRSGVESRKH 128 + +Y + L+ N+ ++ + R+ D ++ ++ K Sbjct: 4 YLKQYIEDMRKKELSKNTIEAYNRDIIKFCKFLKEREEDILDADMVSIMAYVQTLKKEKK 63 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS- 187 SS I+ + S+R +K+ +R NP ++ E PK K T +++++F + Sbjct: 64 ADSSIIRSIVSIRNFYKYLIRMGKDVDNPLINYEVPKNKRTIPEILTVDEVEKFLNAPDC 123 Query: 188 ---EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK-TGTIITVE------- 236 +G + + E + +G++ S+ R + + + +K + + Sbjct: 124 SEYKGIRDKAMLELMYATGMKVSELLRVTIFDINLKLCYVKCKGVKDKERIIPIGSYAVN 183 Query: 237 -LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFS 293 L + M+ ET F N KM F K A AG+NK + +R Sbjct: 184 CLNEYLNVRDKMSAANSETLFCNLRGGKMTRQGFWKIVKKYAKDAGINKKIDSYTLRHSF 243 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 A GA + G T+ + Y+ + + ++ Sbjct: 244 AVHLLQNGADIKSVQELLGHNTIATTQIYSSISKQNKI 281 >gi|297620964|ref|YP_003709101.1| Tyrosine recombinase XerD [Waddlia chondrophila WSU 86-1044] gi|297376265|gb|ADI38095.1| Tyrosine recombinase XerD [Waddlia chondrophila WSU 86-1044] Length = 292 Score = 137 bits (344), Expect = 4e-30, Method: Composition-based stats. Identities = 55/268 (20%), Positives = 94/268 (35%), Gaps = 24/268 (8%) Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE------SRKHTPS 131 Y S L N+ +++ I + V+ SR+ S Sbjct: 11 YLGSE--KGLTQNTIEAYQRDVFSFISHLESKGIQGFNEVGQEEIVDFLSYLKSRQLAVS 68 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS----FWS 187 + + L +++V F++ R+ V N L ++ PK T E+M+ + S Sbjct: 69 TISRHLIAIKVFFRFLKREGVVENNVSLYLQSPKGWQIIPDVLTMEEMEILLNQPDPETS 128 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL-- 245 EG + R E L GLR S+ C+ ++ L+ + K V L + + Sbjct: 129 EGVRDRAILELLYACGLRVSELCQMKIEDLEEETVRV-FGKGRKERIVPLGSHASQAINR 187 Query: 246 -------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATI 296 + F+N + MN K +AG+ KS H +R AT Sbjct: 188 YLAKRADCKSIDEAGYLFVNKRGKPMNRVLIWKMIKEYGAQAGITKSLSPHTMRHSFATH 247 Query: 297 SADAGATAHELMATYGWKTVDQAETYTK 324 D GA + G ++ + YT Sbjct: 248 LLDNGAELRVIQEMLGHASISSTDRYTH 275 >gi|324017291|gb|EGB86510.1| tyrosine recombinase XerD [Escherichia coli MS 117-3] Length = 298 Score = 136 bits (343), Expect = 4e-30, Method: Composition-based stats. Identities = 43/270 (15%), Positives = 95/270 (35%), Gaps = 24/270 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDY-----RKITTKHIRSGVESRKHTPSSAIQFLTS 139 +LA N+ ++ ++ + + + + + +S+ + L++ Sbjct: 19 KNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGYKATSSARLLSA 78 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195 +R LF++ R+++ +P + PK + ++ +++ + + Sbjct: 79 VRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLIDQPLELRDKAM 138 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGKET 254 E L +GLR S+ + + ++ K V L + + L Sbjct: 139 LEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVYWLETYLEHGRP 198 Query: 255 FFIN----------NDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAG 301 + +N Q+M F K A AG++ S H +R AT + G Sbjct: 199 WLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHAFATHLLNHG 258 Query: 302 ATAHELMATYGWKTVDQAETYTKGA-DRIR 330 A + G + + YT A +R+R Sbjct: 259 ADLRVVQILLGHSDLSTTQIYTHVATERLR 288 >gi|254181547|ref|ZP_04888144.1| tyrosine recombinase XerD [Burkholderia pseudomallei 1655] gi|254298194|ref|ZP_04965646.1| tyrosine recombinase XerD [Burkholderia pseudomallei 406e] gi|157808367|gb|EDO85537.1| tyrosine recombinase XerD [Burkholderia pseudomallei 406e] gi|184212085|gb|EDU09128.1| tyrosine recombinase XerD [Burkholderia pseudomallei 1655] Length = 329 Score = 136 bits (343), Expect = 4e-30, Method: Composition-based stats. Identities = 53/307 (17%), Positives = 96/307 (31%), Gaps = 28/307 (9%) Query: 52 TGSTPKREYINSPRKKPTTLKWLISE----YRKSAHW--GSLAVNSRISFESYFDQIIRK 105 G P + WL S A W L+ N+ ++ + Sbjct: 13 AGRAPAPPADRPVDALAASPAWLDSRASIDLFCDAMWLEHGLSRNTLDAYRRDLQLFAQW 72 Query: 106 SGDF---DYRKITTKHIRSGVESRKH-TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV 161 + + + +R +S+ + L+ R + WAVR+ A++P L + Sbjct: 73 LAARYAASVDHASEPTLTEYIAARSDGKATSSNRRLSVFRRYYGWAVREHRAAVDPTLRI 132 Query: 162 ERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL 217 K+ ++ ++ + G + R E + SGLR S+ + Sbjct: 133 ASAKQAPRFPSTLSEAQVEALLAAPDVDTPLGLRDRTMLELMYASGLRVSELVTLKTVEV 192 Query: 218 QNNIFSIKTQKTGTIITV---------ELPDGFMKLLAMT--PIGKETFFINNDKQKMNA 266 N ++ G+ + + + F+ M Sbjct: 193 GLNEGVVRVTGKGSKERLVPFGEVAHGWIERYLRDARPALLGARAADALFVTARGDGMTR 252 Query: 267 TQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 QF K A +A V + S H +R AT + GA + G + + YT Sbjct: 253 QQFWNIIKRHAQQADVRVHLSPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTH 312 Query: 325 GADRIRL 331 A R RL Sbjct: 313 VA-RERL 318 >gi|254467274|ref|ZP_05080685.1| phage integrase [Rhodobacterales bacterium Y4I] gi|206688182|gb|EDZ48664.1| phage integrase [Rhodobacterales bacterium Y4I] Length = 392 Score = 136 bits (343), Expect = 4e-30, Method: Composition-based stats. Identities = 62/341 (18%), Positives = 113/341 (33%), Gaps = 24/341 (7%) Query: 25 FRKGHGRRIRLPYPHESTFIPAYMSA-------LTGSTPKREYINSPRKKPTTLKWLISE 77 +RKG R H + + E I+ RK P T+ L Sbjct: 45 YRKGGRTRRVSVGRHGKITVDEARKLAKEIMGQVAKGENPAEEISQHRKAP-TVAALCER 103 Query: 78 YRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQF 136 + ++ +++ + D I+ G F + + I + P A + Sbjct: 104 FFEAHAKERCKPSTQKEYRRAIDLFIVPALGSFKVVDVERRDIAELHHKFRDKPYQANRT 163 Query: 137 LTSMRVLFKWAVRQEYVAI--NPCLSVERPKRKTEGIRPWTKEDMQQF-------KSFWS 187 L + +F A NPC V + + R ++ ++Q+ + S Sbjct: 164 LGVLSKMFNLAEIWGLRPDGSNPCRHVPKYREVKRE-RFLSQPELQRLGQVLSEVEREGS 222 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM 247 E AF L+ +G R + ++ N + KTG + LP +LA Sbjct: 223 ETPHMVAAFRLLILTGCRLGEIQTLKWDYITANGMELPDSKTGAR-RIPLPQPARDVLAR 281 Query: 248 TPIGKETFFINNDKQK-MNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAH 305 P ++ K AT ++ +AG+ H +R A+ + AG Sbjct: 282 LPRSPGNPYVIEGKLPGQYATDLQHPWRRIRDRAGLAGVRIHDLRHTYASNAVSAGMPIQ 341 Query: 306 ELMATYGWKTVDQAETYTKGAD--RIRLGIKNSRRISSVVD 344 + G + Y AD + +N+ R+ S+V Sbjct: 342 MVGRLLGHTQIQTTMRYAHLADDPVRQAAEENAARLGSLVG 382 >gi|169830712|ref|YP_001716694.1| phage integrase family protein [Candidatus Desulforudis audaxviator MP104C] gi|169637556|gb|ACA59062.1| phage integrase family protein [Candidatus Desulforudis audaxviator MP104C] Length = 300 Score = 136 bits (343), Expect = 4e-30, Method: Composition-based stats. Identities = 46/291 (15%), Positives = 99/291 (34%), Gaps = 24/291 (8%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRK--------ITTKHIRS 121 L+ +I E+ + + + ++ S + + ++ Sbjct: 4 LQEVIREFLRYLRAEKDASPETLAAYRSDLRPLEDFLFRERIAPELANLTTPVLRRYFIW 63 Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 E RK +S + + R F++ QEY+ +P + PK +E+++ Sbjct: 64 LQEERKLKAASLRRKIHCFRSFFRYLAEQEYIPGDPMRKIRPPKEPDRVPIYLKEEELKW 123 Query: 182 FKSFW-----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-ITV 235 + + +L L Y GLR S+ R + +++ + G + Sbjct: 124 LLTAPGHLGGPYHLRDKLILHLLAYCGLRRSELLRLDWDDVDLGAGTLRVRGKGKRERLI 183 Query: 236 ELPDGFMKLL-----AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAH 287 L ++L P+ F+ + +MN + FK AG++ + H Sbjct: 184 PLIPELQQILWEYLQTRLPLENRALFLGREGGRMNKDALTRLFKRYVRMAGLDPAVITPH 243 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNSR 337 +R AT+ + G + G + Y + R+R ++ R Sbjct: 244 KLRHSFATLLLEKGTDVFTIQELMGHADLASTRIYAHCSSKRLREAVERIR 294 >gi|126455125|ref|YP_001065195.1| site-specific tyrosine recombinase XerD [Burkholderia pseudomallei 1106a] gi|167737435|ref|ZP_02410209.1| site-specific tyrosine recombinase XerD [Burkholderia pseudomallei 14] gi|167823028|ref|ZP_02454499.1| site-specific tyrosine recombinase XerD [Burkholderia pseudomallei 9] gi|167909818|ref|ZP_02496909.1| site-specific tyrosine recombinase XerD [Burkholderia pseudomallei 112] gi|226192850|ref|ZP_03788463.1| tyrosine recombinase XerD [Burkholderia pseudomallei Pakistan 9] gi|242316366|ref|ZP_04815382.1| tyrosine recombinase XerD [Burkholderia pseudomallei 1106b] gi|126228767|gb|ABN92307.1| tyrosine recombinase XerD [Burkholderia pseudomallei 1106a] gi|225935100|gb|EEH31074.1| tyrosine recombinase XerD [Burkholderia pseudomallei Pakistan 9] gi|242139605|gb|EES26007.1| tyrosine recombinase XerD [Burkholderia pseudomallei 1106b] Length = 333 Score = 136 bits (343), Expect = 4e-30, Method: Composition-based stats. Identities = 53/307 (17%), Positives = 97/307 (31%), Gaps = 28/307 (9%) Query: 52 TGSTPKREYINSPRKKPTTLKWLISE----YRKSAHW--GSLAVNSRISFESYFDQIIRK 105 G P + + WL S A W L+ N+ ++ + Sbjct: 17 AGRAPAQPADRPVDALAASPAWLDSRASIDLFCDAMWLEHGLSRNTLDAYRRDLQLFAQW 76 Query: 106 SGDFDYRKIT---TKHIRSGVESRKH-TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV 161 + + + +R +S+ + L+ R + WAVR+ A++P L + Sbjct: 77 LAARHAASVDHASEPTLTEYIAARSDGKATSSNRRLSVFRRYYGWAVREHRAAVDPTLRI 136 Query: 162 ERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL 217 K+ ++ ++ + G + R E + SGLR S+ + Sbjct: 137 ASAKQAPRFPSTLSEAQVEALLAAPDVDTPLGLRDRTMLELMYASGLRVSELVTLKTVEV 196 Query: 218 QNNIFSIKTQKTGTIITV---------ELPDGFMKLLAMT--PIGKETFFINNDKQKMNA 266 N ++ G+ + + + F+ M Sbjct: 197 GLNEGVVRVTGKGSKERLVPFGEVAHGWIERYLRDARPALLGARAADALFVTARGDGMTR 256 Query: 267 TQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 QF K A +A V + S H +R AT + GA + G + + YT Sbjct: 257 QQFWNIIKRHAQQADVRVHLSPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTH 316 Query: 325 GADRIRL 331 A R RL Sbjct: 317 VA-RERL 322 >gi|116333414|ref|YP_794941.1| integrase [Lactobacillus brevis ATCC 367] gi|116098761|gb|ABJ63910.1| tyrosine recombinase XerD subunit [Lactobacillus brevis ATCC 367] Length = 298 Score = 136 bits (343), Expect = 4e-30, Method: Composition-based stats. Identities = 45/270 (16%), Positives = 86/270 (31%), Gaps = 24/270 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH------IRSGVESRKHTPSSAIQFLT 138 LA NS S+ + S + + + +S I ++ Sbjct: 19 QGLAANSVTSYTQELRNLGTYLAQQHLTSFKDADRLTIMAYLSNLTATGKSRNSVIHAVS 78 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRL 194 ++R +++ V+ + NP +V PK T ++ + + G + R Sbjct: 79 ALRKFYRYLVQTHQMTTNPMANVAAPKHAEHLPAVLTVAEVDRLLAAPDTTTKYGLRDRA 138 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAM------ 247 E + +GLR S+ + L + I+T K + + D + Sbjct: 139 ILEVMYATGLRVSELVHLKLADLHLEMGLIQTLGKGDKERIIPIGDVATDWINRYLQTSR 198 Query: 248 ----TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAG 301 F+N ++ K A +NK + H +R AT + G Sbjct: 199 PVLLKQRTSPYLFLNAHGGGLSRQAIWQKIKQYVAVAQINKDVTPHTLRHSFATHILENG 258 Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRL 331 A + G + + YT + RL Sbjct: 259 ADLRVVQELLGHADITTTQIYTH-ISKKRL 287 >gi|33592631|ref|NP_880275.1| site-specific tyrosine recombinase XerD [Bordetella pertussis Tohama I] gi|33572277|emb|CAE41829.1| integrase/recombinase [Bordetella pertussis Tohama I] Length = 310 Score = 136 bits (343), Expect = 4e-30, Method: Composition-based stats. Identities = 49/306 (16%), Positives = 98/306 (32%), Gaps = 35/306 (11%) Query: 62 NSPRKKPTTLKWLISE-YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD---------- 110 ++P L I + + LA N+ ++ + + Sbjct: 4 SAPLASQADLDAFIDAVWLEDG----LAANTLAAYRRDLSAFAQWLENLACHPGLATGAS 59 Query: 111 YRKITTKHIRSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168 R+ I + +R + ++A + L ++R + WA+R+ +PCL++ K+ Sbjct: 60 LREAGKGDIEAWFAARHAESRATTANRRLAALRRFYAWALRERLTPSDPCLTLVTAKQPP 119 Query: 169 EGIRPWTKEDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224 + ++ + G + R E L +GLR S+ + N + Sbjct: 120 RLPKTLSEAQVDALLQAPDLDTARGLRDRAMLETLYATGLRVSELVSVKALDVSLNEGVV 179 Query: 225 KT--QKTGTIITVELPDGFMKLLAM----------TPIGKETFFINNDKQKMNATQFSIW 272 + K G V L + + F+ + M+ F Sbjct: 180 RVVMGKGGKDRLVPLGAEAAHWIERYAGSARPELLGARVADALFVTARAEPMSRQAFWQL 239 Query: 273 FKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 K A A ++ S H +R AT + GA + G + + YT A Sbjct: 240 VKKYALAADIHAPLSPHVLRHAFATHLLNHGADLRVVQMLLGHADISTTQIYTHVARERL 299 Query: 331 LGIKNS 336 + + Sbjct: 300 KALHAA 305 >gi|126438545|ref|YP_001057962.1| site-specific tyrosine recombinase XerD [Burkholderia pseudomallei 668] gi|126451016|ref|YP_001079697.1| site-specific tyrosine recombinase XerD [Burkholderia mallei NCTC 10247] gi|134279602|ref|ZP_01766314.1| tyrosine recombinase XerD [Burkholderia pseudomallei 305] gi|166998458|ref|ZP_02264318.1| tyrosine recombinase XerD [Burkholderia mallei PRL-20] gi|167814554|ref|ZP_02446234.1| site-specific tyrosine recombinase XerD [Burkholderia pseudomallei 91] gi|167844587|ref|ZP_02470095.1| site-specific tyrosine recombinase XerD [Burkholderia pseudomallei B7210] gi|167901578|ref|ZP_02488783.1| site-specific tyrosine recombinase XerD [Burkholderia pseudomallei NCTC 13177] gi|217419758|ref|ZP_03451264.1| tyrosine recombinase XerD [Burkholderia pseudomallei 576] gi|254196593|ref|ZP_04903017.1| tyrosine recombinase XerD [Burkholderia pseudomallei S13] gi|254360098|ref|ZP_04976368.1| tyrosine recombinase XerD [Burkholderia mallei 2002721280] gi|52208916|emb|CAH34855.1| putative integrase/recombinase [Burkholderia pseudomallei K96243] gi|126218038|gb|ABN81544.1| tyrosine recombinase XerD [Burkholderia pseudomallei 668] gi|126243886|gb|ABO06979.1| tyrosine recombinase XerD [Burkholderia mallei NCTC 10247] gi|134248802|gb|EBA48884.1| tyrosine recombinase XerD [Burkholderia pseudomallei 305] gi|148029338|gb|EDK87243.1| tyrosine recombinase XerD [Burkholderia mallei 2002721280] gi|169653336|gb|EDS86029.1| tyrosine recombinase XerD [Burkholderia pseudomallei S13] gi|217397062|gb|EEC37078.1| tyrosine recombinase XerD [Burkholderia pseudomallei 576] gi|243065512|gb|EES47698.1| tyrosine recombinase XerD [Burkholderia mallei PRL-20] Length = 333 Score = 136 bits (343), Expect = 4e-30, Method: Composition-based stats. Identities = 53/307 (17%), Positives = 96/307 (31%), Gaps = 28/307 (9%) Query: 52 TGSTPKREYINSPRKKPTTLKWLISE----YRKSAHW--GSLAVNSRISFESYFDQIIRK 105 G P + WL S A W L+ N+ ++ + Sbjct: 17 AGRAPAPPADRPVDALAASPAWLDSRASIDLFCDAMWLEHGLSRNTLDAYRRDLQLFAQW 76 Query: 106 SGDFDYRKIT---TKHIRSGVESRKH-TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV 161 + + + +R +S+ + L+ R + WAVR+ A++P L + Sbjct: 77 LAARHAASVDHASEPTLTEYIAARSDGKATSSNRRLSVFRRYYGWAVREHRAAVDPTLRI 136 Query: 162 ERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL 217 K+ ++ ++ + G + R E + SGLR S+ + Sbjct: 137 ASAKQAPRFPSTLSEAQVEALLAAPDVDTPLGLRDRTMLELMYASGLRVSELVTLKTVEV 196 Query: 218 QNNIFSIKTQKTGTIITV---------ELPDGFMKLLAMT--PIGKETFFINNDKQKMNA 266 N ++ G+ + + + F+ M Sbjct: 197 GLNEGVVRVTGKGSKERLVPFGEVAHGWIERYLRDARPALLGARAADALFVTARGDGMTR 256 Query: 267 TQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 QF K A +A V + S H +R AT + GA + G + + YT Sbjct: 257 QQFWNIIKRHAQQADVRVHLSPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTH 316 Query: 325 GADRIRL 331 A R RL Sbjct: 317 VA-RERL 322 >gi|325954400|ref|YP_004238060.1| Tyrosine recombinase xerC [Weeksella virosa DSM 16922] gi|323437018|gb|ADX67482.1| Tyrosine recombinase xerC [Weeksella virosa DSM 16922] Length = 294 Score = 136 bits (343), Expect = 4e-30, Method: Composition-based stats. Identities = 47/260 (18%), Positives = 90/260 (34%), Gaps = 21/260 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK--HTPSSAIQFLTSMRV 142 +A N+ S+ ++ ++ ++ T + V + ++ S + L+ ++ Sbjct: 18 KHMANNTIESYMRDIKKL-QQFSPLLPQEHTYDSLVEFVHAMAKEYSQRSQARILSGLKS 76 Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRLAFEF 198 F + +E NP +E PK T+ T++++ + EG + R E Sbjct: 77 YFNYLQYEEIRQDNPTELLESPKIGTKLPDVLTEKEIDRLVDVIDLSKPEGERNRAIIEM 136 Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPD-----------GFMKLLA 246 L GLR ++ + L I+ K V + K Sbjct: 137 LYGCGLRVTELVNLRISDLFFEEGYIRVLGKGNKERLVPISPYTIKYIDLYRNEIRKHQP 196 Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATA 304 + P ++ F+N + + K + AG+ K S H R AT GA Sbjct: 197 IQPGYEDILFLNRRGRNITRVMIFTIIKELSIIAGIQKNISPHTFRHSFATHLLKNGADL 256 Query: 305 HELMATYGWKTVDQAETYTK 324 + G + + E YT Sbjct: 257 RAIQQMLGHENIVTTEVYTH 276 >gi|331672503|ref|ZP_08373293.1| putative integrase for prophage [Escherichia coli TA280] gi|331070409|gb|EGI41774.1| putative integrase for prophage [Escherichia coli TA280] Length = 300 Score = 136 bits (343), Expect = 4e-30, Method: Composition-based stats. Identities = 50/267 (18%), Positives = 91/267 (34%), Gaps = 17/267 (6%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK-H 128 T+ L + S + LA ++ + + ++ G + + +R ++ R Sbjct: 25 TVAKLWHMFMDSPAFTELAPRTQKDYRQHQRALLAVFGKVLADNVKIEQVRIFMDKRGLE 84 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 + + A L S+ ++ W + YV NPC V + K + T E + Sbjct: 85 SKTQANHELASLSRVYGWGYERGYVKNNPCKGVRKFTLKARTVYI-TDEQYAAIYA--EA 141 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT 248 Q R+A E R D Q + + I+ KTGT E + + Sbjct: 142 IPQLRIAMEISYLCAARLGDVLELKWQDIMDKGIYIEQNKTGTKQIKEWSPRLRTAIQLA 201 Query: 249 ----PIGKETFFINNDKQKMNATQFSIWF----KAKATKAGVN--KSAHGVRKFSATISA 298 E K+ A + W+ +A KAGV + H + K Sbjct: 202 RNVSSGTCEYVINTTKGGKVIAKTLNNWWNQAKRAAEQKAGVPFGCNFHDI-KAKGISDY 260 Query: 299 DAGATAHELMATYGWKTVDQAETYTKG 325 + ++ + G KT +Q Y + Sbjct: 261 E--GSSRDKQIFSGHKTENQVLIYDRK 285 >gi|332180706|gb|AEE16394.1| Tyrosine recombinase xerC [Treponema brennaborense DSM 12168] Length = 308 Score = 136 bits (343), Expect = 4e-30, Method: Composition-based stats. Identities = 54/282 (19%), Positives = 97/282 (34%), Gaps = 24/282 (8%) Query: 67 KPTTLKWLISEYRK-SAHWGSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIR--- 120 P TL+ E+ + +LA+N+ + + ++ R G +T +R Sbjct: 4 APATLQEACEEFLLYESSVRNLALNTIAGYRNDLARLCRLLGGASLPLTSVTVTDLRFCI 63 Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 + +K SS +F+ ++R LF + R EY+ NP + K+ R T+ ++ Sbjct: 64 GELSRKKSAASSVNRFIAAVRSLFAYCRRFEYIKSNPATELHTVKQPRHLPRFMTESEVD 123 Query: 181 QF-----KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIIT 234 + ++ FE L SG R S+ + + ++ T K G Sbjct: 124 ALCSQPERKTLLWQTRDTAIFEMLYSSGCRVSELASLRLSDFSADFRSAVVTGKGGKDRR 183 Query: 235 VELPDG--------FMKLLAMTPIGK--ETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284 V + + A P + FIN + + G +K Sbjct: 184 VFFSEQAGKALAGYLRERAARIPKNRTVSAVFINMQGTPLTTRGIRYIVSRYSGLEGTDK 243 Query: 285 --SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 S H R AT GA + G ++ + YT Sbjct: 244 PVSPHAFRHTFATSMLSHGADVRVVQELLGHSSISTTQRYTH 285 >gi|238561655|ref|ZP_00441610.2| tyrosine recombinase XerD [Burkholderia mallei GB8 horse 4] gi|254208847|ref|ZP_04915195.1| tyrosine recombinase XerD [Burkholderia mallei JHU] gi|147750723|gb|EDK57792.1| tyrosine recombinase XerD [Burkholderia mallei JHU] gi|238524066|gb|EEP87501.1| tyrosine recombinase XerD [Burkholderia mallei GB8 horse 4] Length = 329 Score = 136 bits (343), Expect = 4e-30, Method: Composition-based stats. Identities = 53/307 (17%), Positives = 96/307 (31%), Gaps = 28/307 (9%) Query: 52 TGSTPKREYINSPRKKPTTLKWLISE----YRKSAHW--GSLAVNSRISFESYFDQIIRK 105 G P + WL S A W L+ N+ ++ + Sbjct: 13 AGRAPAPPADRLVDALAASPAWLDSRASIDLFCDAMWLEHGLSRNTLDAYRRDLQLFAQW 72 Query: 106 SGDFDYRKIT---TKHIRSGVESRKH-TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV 161 + + + +R +S+ + L+ R + WAVR+ A++P L + Sbjct: 73 LAARHAASVDHASEPTLTEYIAARSDGKATSSNRRLSVFRRYYGWAVREHRAAVDPTLRI 132 Query: 162 ERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL 217 K+ ++ ++ + G + R E + SGLR S+ + Sbjct: 133 ASAKQAPRFPSTLSEAQVEALLAAPDVDTPLGLRDRTMLELMYASGLRVSELVTLKTVEV 192 Query: 218 QNNIFSIKTQKTGTIITV---------ELPDGFMKLLAMT--PIGKETFFINNDKQKMNA 266 N ++ G+ + + + F+ M Sbjct: 193 GLNEGVVRVTGKGSKERLVPFGEVAHGWIERYLRDARPALLGARAADALFVTARGDGMTR 252 Query: 267 TQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 QF K A +A V + S H +R AT + GA + G + + YT Sbjct: 253 QQFWNIIKRHAQQADVRVHLSPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTH 312 Query: 325 GADRIRL 331 A R RL Sbjct: 313 VA-RERL 318 >gi|99078558|ref|YP_611816.1| phage integrase [Ruegeria sp. TM1040] gi|99035696|gb|ABF62554.1| phage integrase [Ruegeria sp. TM1040] Length = 411 Score = 136 bits (343), Expect = 4e-30, Method: Composition-based stats. Identities = 62/341 (18%), Positives = 113/341 (33%), Gaps = 24/341 (7%) Query: 25 FRKGHGRRIRLPYPHESTFIPAYMSA-------LTGSTPKREYINSPRKKPTTLKWLISE 77 +RKG R H + + E I+ RK P T+ L Sbjct: 64 YRKGGRTRRVSVGRHGKITVDEARKLAKEIMGQVAKGENPAEEISQHRKAP-TVAALCER 122 Query: 78 YRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQF 136 + ++ +++ + D I+ G F + + I + P A + Sbjct: 123 FFEAHAKERCKPSTQKEYRRAIDLFIVPALGSFKVVDVERRDIAELHHKFRDKPHQANRT 182 Query: 137 LTSMRVLFKWAVRQEYVAI--NPCLSVERPKRKTEGIRPWTKEDMQQF-------KSFWS 187 L + +F A NPC V + + R ++ ++Q+ + S Sbjct: 183 LGVLSKMFNLAEIWGLRPDGSNPCRHVPKYREVKRE-RFLSQSELQRLGQVLTEVEREGS 241 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM 247 E AF L+ +G R + ++ N + KTG + LP +LA Sbjct: 242 ETPHMVAAFRLLILTGCRLGEIQTLKWGYITANGMELPDSKTGAR-RIPLPQPARDVLAR 300 Query: 248 TPIGKETFFINNDKQK-MNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAH 305 P ++ K AT ++ +AG+ H +R A+ + AG Sbjct: 301 LPRTPGHPYVIEGKLPGQYATDLQHPWRRIRDRAGLCGVRIHDLRHTYASNAVSAGMPIQ 360 Query: 306 ELMATYGWKTVDQAETYTKGAD--RIRLGIKNSRRISSVVD 344 + G + Y AD + +N+ R+ S+V Sbjct: 361 MVGRLLGHTQIQTTMRYAHLADDPVRQAAEENAARLGSMVG 401 >gi|221199203|ref|ZP_03572247.1| tyrosine recombinase XerD [Burkholderia multivorans CGD2M] gi|221206600|ref|ZP_03579612.1| tyrosine recombinase XerD [Burkholderia multivorans CGD2] gi|221173255|gb|EEE05690.1| tyrosine recombinase XerD [Burkholderia multivorans CGD2] gi|221180488|gb|EEE12891.1| tyrosine recombinase XerD [Burkholderia multivorans CGD2M] Length = 316 Score = 136 bits (343), Expect = 4e-30, Method: Composition-based stats. Identities = 49/268 (18%), Positives = 91/268 (33%), Gaps = 22/268 (8%) Query: 85 GSLAVNSRISFES---YFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSSAIQFLTSM 140 LA N+ ++ F Q + + D + + +R+ +S+ + L+ Sbjct: 39 HGLARNTLDAYRRDLTLFSQWLAATHDAALDAADETMLTGYIAARRDGKATSSNRRLSVF 98 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAF 196 R + WAVR+ + +P L + K+ ++ ++ G + R Sbjct: 99 RRYYGWAVREHRASADPTLRIASAKQAARFPSTLSEAQVEALLGAPDIATPLGLRDRTML 158 Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------ELPDGFMKLLAM 247 E + SGLR S+ + N ++ G+ + + + Sbjct: 159 ELMYASGLRVSELVTLKTVEVGLNEGVVRVMGKGSKERLVPFGEVAHGWIERYLREARPA 218 Query: 248 T--PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGAT 303 + F+ M QF K A +A V + S H +R AT + GA Sbjct: 219 LLGARAADALFVTARGDGMTRQQFWNIIKRHAQQADVRAHLSPHTLRHAFATHLLNHGAD 278 Query: 304 AHELMATYGWKTVDQAETYTKGADRIRL 331 + G + + YT A R RL Sbjct: 279 LRVVQLLLGHADISTTQIYTHVA-RERL 305 >gi|254203866|ref|ZP_04910226.1| tyrosine recombinase XerD [Burkholderia mallei FMH] gi|147745378|gb|EDK52458.1| tyrosine recombinase XerD [Burkholderia mallei FMH] Length = 333 Score = 136 bits (343), Expect = 4e-30, Method: Composition-based stats. Identities = 51/321 (15%), Positives = 97/321 (30%), Gaps = 39/321 (12%) Query: 49 SALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGS-----------------LAVNS 91 A+ ++ R L+ S W L+ N+ Sbjct: 3 RAVHACAADTAGGDAGRAPAPPADRLVDALAASPAWLDSRASIDLFCDAMWLEHGLSRNT 62 Query: 92 RISFESYFDQIIRKSGDFDYRKIT---TKHIRSGVESRKH-TPSSAIQFLTSMRVLFKWA 147 ++ + + + + +R +S+ + L+ R + WA Sbjct: 63 LDAYRRDLQLFAQWLAARHAASVDHASEPTLTEYIAARSDGKATSSNRRLSVFRRYYGWA 122 Query: 148 VRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAFEFLLYSG 203 VR+ A++P L + K+ ++ ++ + G + R E + SG Sbjct: 123 VREHRAAVDPTLRIASAKQAPRFPSTLSEAQVEALLAAPDVDTPLGLRDRTMLELMYASG 182 Query: 204 LRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------ELPDGFMKLLAMT--PIGK 252 LR S+ + N ++ G+ + + Sbjct: 183 LRVSELVTLKTVEVGLNEGVVRVTGKGSKERLVPFGEVAHGWIERYLRDARPALLGARAA 242 Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMAT 310 + F+ M QF K A +A V + S H +R AT + GA + Sbjct: 243 DALFVTARGDGMTRQQFWNIIKRHAQQADVRVHLSPHTLRHAFATHLLNHGADLRVVQLL 302 Query: 311 YGWKTVDQAETYTKGADRIRL 331 G + + YT A R RL Sbjct: 303 LGHSDISTTQIYTHVA-RERL 322 >gi|299065844|emb|CBJ37023.1| site-specific tyrosine recombinase [Ralstonia solanacearum CMR15] Length = 311 Score = 136 bits (343), Expect = 5e-30, Method: Composition-based stats. Identities = 52/309 (16%), Positives = 97/309 (31%), Gaps = 41/309 (13%) Query: 54 STPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI----------I 103 + E + +P ++ LA N+ ++ + Sbjct: 2 TQAAPETLPTPPSSTEAIQRFCDALWLED---GLARNTLDAYRRDLTLYAQWLAGRGKAL 58 Query: 104 RKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER 163 ++ D D + S+A + T + F+WA+R+ V +P + Sbjct: 59 DQTEDADLSDYFAARHEDSL------ASTANRRRTVFKRFFQWALREHVVNADPTRLLPT 112 Query: 164 PKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN 219 K+ + ++ ++ + G + R E + SGLR S+ + Sbjct: 113 AKQPPRVPQTLSEAQVEALIAAPDVDAPLGLRDRAMIELMYASGLRVSEIVALKTVEVGL 172 Query: 220 NIFSIKT--QKTGTIITVELP----DGFMKLLAMTPIGK---------ETFFINNDKQKM 264 N ++ K G V D + L G+ + F+ M Sbjct: 173 NEGVVRVIGGKGGKDRLVPFGAEAGDWLRRYLQDGHKGRTALLGQRTADALFVTARGDGM 232 Query: 265 NATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 F K A +A ++ S H +R AT + GA + G + + Y Sbjct: 233 TRQAFWYLIKRYAQRADIHAPLSPHTLRHAFATHLLNHGADLRVVQMLLGHADISTTQIY 292 Query: 323 TKGADRIRL 331 T A R RL Sbjct: 293 THVA-RERL 300 >gi|297621664|ref|YP_003709801.1| Site-specific tyrosine recombinase XerC [Waddlia chondrophila WSU 86-1044] gi|297376965|gb|ADI38795.1| Site-specific tyrosine recombinase XerC [Waddlia chondrophila WSU 86-1044] Length = 301 Score = 136 bits (343), Expect = 5e-30, Method: Composition-based stats. Identities = 47/266 (17%), Positives = 93/266 (34%), Gaps = 26/266 (9%) Query: 85 GSLAVNSRISF-------ESYFDQIIRKSGDFDYRKITTKHIR---SGVESRKHTPSSAI 134 + + ++ ++ + + +Q + DF +I + IR + + S+ + + + Sbjct: 19 KNASEHTIRNYAIDLNIFKQHLEQEWQSDEDFALNRIERRQIRGFLAMMNSKGASKRTIL 78 Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GS 190 + L+S+R FKWA + + NP +E PK + P + ++ S GS Sbjct: 79 RRLSSLRTFFKWAFANQLITSNPIEEIESPKLEKTIPTPLSYTQVEHLFSLPEIETLLGS 138 Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELP----DGFMKLL 245 + R E SGLR S+ + K + + K L Sbjct: 139 RDRCMMELFYSSGLRVSELVGLNKNDVDITTRLMKVRGKGKKERVIPVTHNAVYWIQKYL 198 Query: 246 AMTPIG-----KETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISA 298 F+N +++ FK K+G+ + H +R AT Sbjct: 199 RHPERKFSCEENHAIFLNKLGTRLSVRSVDRNFKRYLIKSGLGGNVTPHTIRHTIATHWL 258 Query: 299 DAGATAHELMATYGWKTVDQAETYTK 324 + G + G +++ YT Sbjct: 259 ENGMDLKTIQTLLGHESLSSTTIYTH 284 >gi|326331272|ref|ZP_08197564.1| tyrosine recombinase XerD [Nocardioidaceae bacterium Broad-1] gi|325950905|gb|EGD42953.1| tyrosine recombinase XerD [Nocardioidaceae bacterium Broad-1] Length = 298 Score = 136 bits (343), Expect = 5e-30, Method: Composition-based stats. Identities = 51/268 (19%), Positives = 91/268 (33%), Gaps = 29/268 (10%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITT----------KHIRSGVESR-KHTPSSA 133 LA N+ S+ + D +T H+R G E + +SA Sbjct: 12 RGLAANTLSSYRRDLRRYAEFLAQQDVDDLTAVSEATVSGFLAHLREGSEEHPALSATSA 71 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-----SE 188 + + ++R K+AV V NP V+ P+ + + D++ Sbjct: 72 ARTVVAVRGFHKFAVADGLVEANPAGHVKPPRAEKRLPKALPLSDVEAILEAAGAPGTPL 131 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIITVELPDGFMKLLAM 247 + R E L +G R S++ V L ++ K G V + ++ + Sbjct: 132 ALRDRALLEVLYGTGARISEAVGLDVDDLDRVDHVALLRGKGGKERIVPVGSYAIEAVEA 191 Query: 248 ----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSAT 295 + F+N +++ A +AG++K S H +R AT Sbjct: 192 YLTRARPDLASARSGGALFLNARGGRLSRQSAWTVLTRAAERAGIDKDVSPHTLRHSFAT 251 Query: 296 ISADAGATAHELMATYGWKTVDQAETYT 323 D GA + G +V + YT Sbjct: 252 HLLDGGADVRVVQELLGHASVTTTQIYT 279 >gi|323154775|gb|EFZ40973.1| tyrosine recombinase XerD [Escherichia coli EPECa14] Length = 298 Score = 136 bits (343), Expect = 5e-30, Method: Composition-based stats. Identities = 43/270 (15%), Positives = 95/270 (35%), Gaps = 24/270 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDY-----RKITTKHIRSGVESRKHTPSSAIQFLTS 139 +LA N+ ++ ++ + + + + + +S+ + L++ Sbjct: 19 KNLAENTLNAYRRDLSMMVEWLYHRGLTLATAQSDDLQALLAERLEGGYKATSSARLLSA 78 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195 +R LF++ R+++ +P + PK + ++ +++ + + Sbjct: 79 VRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLIDQPLELRDKAM 138 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGKET 254 E L +GLR S+ + + ++ K V L + + L Sbjct: 139 LEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVYWLETYLEHGRP 198 Query: 255 FFIN----------NDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAG 301 + +N Q+M F K A AG++ S H +R AT + G Sbjct: 199 WLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHAFATHLLNHG 258 Query: 302 ATAHELMATYGWKTVDQAETYTKGA-DRIR 330 A + G + + YT A +R+R Sbjct: 259 ADLRVVQMLLGHSDLSTTQIYTHVATERLR 288 >gi|304315042|ref|YP_003850189.1| site-specific recombinase/integrase [Methanothermobacter marburgensis str. Marburg] gi|302588501|gb|ADL58876.1| predicted site-specific recombinase/integrase [Methanothermobacter marburgensis str. Marburg] Length = 311 Score = 136 bits (342), Expect = 5e-30, Method: Composition-based stats. Identities = 48/272 (17%), Positives = 97/272 (35%), Gaps = 25/272 (9%) Query: 74 LISEYRKSAHWGSLAVNSRISFESY----FDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129 LI +Y + + N+ ++ S ++ ++ + +D R++ R ++ Sbjct: 26 LIEDYLVELEIRNYSPNTIKTYRSIVKNFYEFLMEEDDLYDDRRVLRSFKRYIQYLKRDK 85 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS-- 187 + V+ K+ E+ I+ V+ PKR + ++++ + + Sbjct: 86 NVTQNYIYLVTVVIKKF---FEFSEIDCLQEVKAPKRTKSLPKSLNEDEVMRLINAVELS 142 Query: 188 ---------EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238 ++ RL L SGLR S+ V + +I+ + G + L Sbjct: 143 DDGSPIKRFIKTRDRLILSLLYSSGLRVSELVSLKVNDIDMGDRTIRIRGKGDKDRIVLF 202 Query: 239 DG-----FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRK 291 D ++ L+ E F+N + + K A KAG+NK + H +R Sbjct: 203 DESTRDLLVEYLSRRIHESEYLFLNRFGDPLTPRYVQMMIKNYARKAGINKKVTPHILRH 262 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYT 323 AT G + G + + YT Sbjct: 263 SFATHLLKNGVDIRAIQQLLGHSNLSTTQIYT 294 >gi|167718388|ref|ZP_02401624.1| site-specific tyrosine recombinase XerD [Burkholderia pseudomallei DM98] Length = 299 Score = 136 bits (342), Expect = 5e-30, Method: Composition-based stats. Identities = 46/268 (17%), Positives = 88/268 (32%), Gaps = 22/268 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKIT---TKHIRSGVESRKH-TPSSAIQFLTSM 140 L+ N+ ++ + + + + +R +S+ + L+ Sbjct: 22 HGLSRNTLDAYRRDLQLFAQWLAARHAASVDHASEPTLTEYIAARSDGKATSSNRRLSVF 81 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAF 196 R + WAVR+ A++P L + K+ ++ ++ + G + R Sbjct: 82 RRYYGWAVREHRAAVDPTLRIASAKQAPRFPSTLSEAQVEALLAAPDVDTPLGLRDRTML 141 Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------ELPDGFMKLLAM 247 E + SGLR S+ + N ++ G+ + + Sbjct: 142 ELMYASGLRVSELVTLKTVEVGLNEGVVRVTGKGSKERLVPFGEVAHGWIERYLRDARPA 201 Query: 248 T--PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGAT 303 + F+ M QF K A +A V + S H +R AT + GA Sbjct: 202 LLGARAADALFVTARGDGMTRQQFWNIIKRHAQQADVRVHLSPHTLRHAFATHLLNHGAD 261 Query: 304 AHELMATYGWKTVDQAETYTKGADRIRL 331 + G + + YT A R RL Sbjct: 262 LRVVQLLLGHSDISTTQIYTHVA-RERL 288 >gi|167618124|ref|ZP_02386755.1| site-specific tyrosine recombinase XerD [Burkholderia thailandensis Bt4] Length = 312 Score = 136 bits (342), Expect = 5e-30, Method: Composition-based stats. Identities = 51/309 (16%), Positives = 97/309 (31%), Gaps = 26/309 (8%) Query: 50 ALTGSTPKREYINSP--RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD---QIIR 104 A + P E SP R T++ L+ N+ ++ Q + Sbjct: 1 APSADRPADELAASPAWRDSRTSIDLFCDAMWLE---HGLSRNTLDAYRRDLQLFAQWLA 57 Query: 105 KSGDFDYRKITTKHIRSGVESRKH-TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER 163 + + + +R +S+ + L+ R + WAVR+ A++P L + Sbjct: 58 ARHAVSLDRTERPMLEGYIAARSDGKATSSNRRLSVFRRYYGWAVREHRAAVDPTLRIAS 117 Query: 164 PKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN 219 K+ ++ ++ + G + R E + SGLR S+ + Sbjct: 118 AKQAPRFPSTLSEAQVEALLAAPDVDTPLGLRDRTMLELMYASGLRVSELVTLKTVEVGL 177 Query: 220 NIFSIKTQKTGTIITV---------ELPDGFMKLLAMT--PIGKETFFINNDKQKMNATQ 268 N ++ G+ + + + F+ M Q Sbjct: 178 NEGVVRVTGKGSKERLVPFGEVAHGWIERYLRDARPALLGARAADALFVTARGDGMTRQQ 237 Query: 269 FSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 F K A +A V + S H +R AT + GA + G + + YT A Sbjct: 238 FWNIIKRHAQQADVRAHLSPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVA 297 Query: 327 DRIRLGIKN 335 + Sbjct: 298 RERLKALHA 306 >gi|284037325|ref|YP_003387255.1| tyrosine recombinase XerD [Spirosoma linguale DSM 74] gi|283816618|gb|ADB38456.1| tyrosine recombinase XerD [Spirosoma linguale DSM 74] Length = 305 Score = 136 bits (342), Expect = 5e-30, Method: Composition-based stats. Identities = 49/280 (17%), Positives = 105/280 (37%), Gaps = 26/280 (9%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISF----ESYFDQIIRKSGDFDYRKITTK---HIRSG 122 + I+ ++ SLA NS ++ E ++ I+ ++T K + Sbjct: 2 WQSYINAFKNYLKLERSLAENSVEAYLHDAEKLYEYILLTDPARTPMQVTEKELMNFLKY 61 Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 + + S + L+ ++ FK+ + + + +P +E PK + + +++ Sbjct: 62 LGELGLSAHSQARMLSGIKSFFKYLLLEGLIERDPTQLLESPKLGRKLPDTLSFPEIEDM 121 Query: 183 KSF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT-VEL 237 + G++ R E L SGLR S+ + + ++ G + V + Sbjct: 122 LAAIDLSTPGGTRDRAMLEVLYSSGLRVSELLNLRLTNCFFTEGFVRVLGKGDKVRLVPI 181 Query: 238 PDGFMKL-----------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-- 284 + M L + ++T F+N ++++ K A++ G+ K Sbjct: 182 GEDAMHYTRIYVEHVRQKLDVQKGDEDTIFLNLRGKQLSRISVFTTIKKLASEVGIKKTI 241 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 S H R AT + GA + G +++ E YT Sbjct: 242 SPHTFRHSFATHLIEGGADLRAVQQMLGHESITTTEIYTH 281 >gi|162452703|ref|YP_001615070.1| site-specific recombinase [Sorangium cellulosum 'So ce 56'] gi|161163285|emb|CAN94590.1| site-specific recombinase [Sorangium cellulosum 'So ce 56'] Length = 323 Score = 136 bits (342), Expect = 5e-30, Method: Composition-based stats. Identities = 51/280 (18%), Positives = 98/280 (35%), Gaps = 23/280 (8%) Query: 71 LKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH------IRSGV 123 L + Y +LA + ++ +++ + + + Sbjct: 30 LATWVDAYLDHLRVERALAPLTLEAYGHDLAKLVAHAEASGITTVEGLDQSLIGTYLVAL 89 Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 + SSA + L+++R ++ +R+ + +PC VERP+ + + +++ Sbjct: 90 GQAGISASSAARHLSAVRGFVRFLLRERRIERDPCALVERPRVGRRLPKVLSFDEIALLI 149 Query: 184 SFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQN-NIFSIKTQKTGTIITVELP 238 +G+ + R + +GLR S+ R + + + K G V L Sbjct: 150 EAPEQGTFKGLRDRAMLHVMYAAGLRVSEVVRLKLADIDRRKGIVMALGKGGKRRLVPLG 209 Query: 239 -------DGFMKLLAMTPIGKET--FFINNDKQKMNATQFSIWFKAKATKAGVNK--SAH 287 D +++L A P T F++ + A G+ K S H Sbjct: 210 EPALAAIDAYLELRATHPRSAATQVLFLSPRGGPLTRQAVWKLLGGYARAVGIAKPSSPH 269 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 +R AT + GA + A G V E YT AD Sbjct: 270 KLRHSFATHLLEGGADLRSVQALLGHANVVTTEIYTHLAD 309 >gi|300114666|ref|YP_003761241.1| tyrosine recombinase XerD [Nitrosococcus watsonii C-113] gi|299540603|gb|ADJ28920.1| tyrosine recombinase XerD [Nitrosococcus watsonii C-113] Length = 305 Score = 136 bits (342), Expect = 5e-30, Method: Composition-based stats. Identities = 46/274 (16%), Positives = 94/274 (34%), Gaps = 23/274 (8%) Query: 86 SLAVNSRISFESYFDQIIRKSGDFDYRKITTKH-----IRSGVESRKHTPSSAIQFLTSM 140 LA N+ ++ + R I + + S + ++S+ Sbjct: 28 GLAENTLAAYRRDLEGFSRWLDSQGRALIRAQREDVLAYLAHRLEGGGKSRSVARSVSSL 87 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAF 196 R +++ +R++ +P VE P+ ++ +++ + S G + R Sbjct: 88 RRFYRYLMREKIRDSDPSDRVELPRLGRLLPESLSEGEVEALLAAPKTNDSLGLRDRTML 147 Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT--------IITVELPDGFMKLLAMT 248 E L +GLR S+ + L + ++ G + + D + Sbjct: 148 ETLYATGLRVSELVNLTLSQLNSRQGVVRLSGKGNKERLVPLGEVALSWLDRYCHEARPG 207 Query: 249 PIGKET---FFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGAT 303 + + F+ M+ F K A ++G+ K S H +R AT + GA Sbjct: 208 LVRGQLNEILFLTRRGGAMSRQAFWYLIKRYARQSGIQKTLSPHTLRHAFATHLLNHGAD 267 Query: 304 AHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 + G + + YT A R RL + + Sbjct: 268 LRVVQILLGHADLSTTQIYTHVA-RARLQQLHQQ 300 >gi|209919452|ref|YP_002293536.1| putative phage integrase [Escherichia coli SE11] gi|209912711|dbj|BAG77785.1| putative phage integrase [Escherichia coli SE11] Length = 342 Score = 136 bits (342), Expect = 5e-30, Method: Composition-based stats. Identities = 63/333 (18%), Positives = 114/333 (34%), Gaps = 36/333 (10%) Query: 6 RLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHE---STFIPAYMSALTGSTPKREYIN 62 +LPP V K K YYF+ I L ++ + Y L + Sbjct: 12 KLPPRVYKN-----KYSYYFKPTPRECITLGKINDLSIAQVWVKYEEILNDAIDV----- 61 Query: 63 SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG 122 T L +++ S ++ L ++ + + +++ G I H+R Sbjct: 62 ------MTFSKLWNKFLNSTYYLELGQRTQKDYLQHQKKLLAAFGKMKADNIKPAHVRLY 115 Query: 123 VESRKHT-PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 ++ R + A SM +F+W + YV NPC V + K +T E+ Sbjct: 116 MDKRGLKSKTQANHEKASMSRVFRWGYERGYVKGNPCQGVSKFSLKPRDYY-FTDEE--- 171 Query: 182 FKSFWSEGSQP-RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240 + + + E S + A E R D + + + I+ KTG + + Sbjct: 172 YIAIYQEASPVLQCAMEIAYLCATRIGDIRKLTWDQVMSKGLFIQQGKTGKKQIKQYSER 231 Query: 241 FM-KLLAMTPIGKETF-FINNDKQKMNATQFSIWFKAKATKAG------VNKSAHGVRKF 292 L +G + F N + + T F+ ++ A + + H + K Sbjct: 232 LTFALEQAKSLGGQHFVVCNKYGGQYSYTGFNDIWRKARAAASEKLGYPITGTFHDL-KA 290 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKG 325 D ++ E G KT Q TY + Sbjct: 291 KGISDYD--GSSKEKQLFSGHKTEAQVLTYDRK 321 >gi|167835679|ref|ZP_02462562.1| site-specific tyrosine recombinase XerD [Burkholderia thailandensis MSMB43] Length = 320 Score = 136 bits (342), Expect = 5e-30, Method: Composition-based stats. Identities = 48/268 (17%), Positives = 89/268 (33%), Gaps = 22/268 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH---IRSGVESRKH-TPSSAIQFLTSM 140 L+ N+ ++ + + + + +R +S+ + L+ Sbjct: 43 HGLSRNTLDAYRRDLQLFAQWLAARHAASLDRAERPMLEGYIAARSDGKATSSNRRLSVF 102 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAF 196 R + WAVR+ A++P L + K+ ++ ++ + G + R Sbjct: 103 RRYYGWAVREHRTAVDPTLRIASAKQAPRFPSTLSEAQVEALLAAPDVDTPLGLRDRTML 162 Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLAM-------- 247 E + SGLR S+ + N ++ T K V + + Sbjct: 163 ELMYASGLRVSELVTLKTVEVGLNEGVVRVTGKGSKERLVPFGEVAHGWIERYLRGARPA 222 Query: 248 --TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGAT 303 + F+ M QF K A +A V + S H +R AT + GA Sbjct: 223 LLGARAADALFVTARGDGMTRQQFWNIIKRHAQQADVRVHLSPHTLRHAFATHLLNHGAD 282 Query: 304 AHELMATYGWKTVDQAETYTKGADRIRL 331 + G + + YT A R RL Sbjct: 283 LRVVQLLLGHSDISTTQIYTHVA-RERL 309 >gi|91202903|emb|CAJ72542.1| similar to site-specific tyrosine recombinase [Candidatus Kuenenia stuttgartiensis] Length = 298 Score = 136 bits (342), Expect = 5e-30, Method: Composition-based stats. Identities = 38/272 (13%), Positives = 94/272 (34%), Gaps = 18/272 (6%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYF-DQIIRKSGD-----FDYRKITTKHIRSGV 123 ++ I Y + + + ++ + + G+ ++ + + + Sbjct: 10 IQRFIDRYLAYIENDRNYSPQTLRAYRNDLGQYLSFLKGEGCTDLAGVTRLQLRKYLAFL 69 Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 + + + ++ + L S+R L+K+ + + NP ++ PK + + D + Sbjct: 70 KKKNPSKTTVARKLASIRSLYKFLCQHGILEYNPVEQIKTPKTDKKLPGFMSVNDTEILL 129 Query: 184 SFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---- 235 + G + + E L +G+R S+ + + + +K + G+ + Sbjct: 130 NQPDTCNLSGLRDKAIMETLYSTGMRVSELVGINIADIDFHSGIVKVRGKGSKERILPVG 189 Query: 236 -ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKF 292 + L E F+N ++ + + KA ++ S H R Sbjct: 190 NHALNAIQLYLEKRKADNEALFLNKFHGRLTERSVARMIEKYMKKAAMHLRVSPHTFRHS 249 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTK 324 AT D GA + G ++ + YT Sbjct: 250 FATHLLDNGADLRAVQEFLGHSSLSTTQIYTH 281 >gi|53725157|ref|YP_102186.1| site-specific tyrosine recombinase XerD [Burkholderia mallei ATCC 23344] gi|121601112|ref|YP_992015.1| site-specific tyrosine recombinase XerD [Burkholderia mallei SAVP1] gi|161723208|ref|YP_107488.2| site-specific tyrosine recombinase XerD [Burkholderia pseudomallei K96243] gi|52428580|gb|AAU49173.1| tyrosine recombinase XerD [Burkholderia mallei ATCC 23344] gi|121229922|gb|ABM52440.1| tyrosine recombinase XerD [Burkholderia mallei SAVP1] Length = 305 Score = 136 bits (342), Expect = 5e-30, Method: Composition-based stats. Identities = 46/268 (17%), Positives = 88/268 (32%), Gaps = 22/268 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKIT---TKHIRSGVESRKH-TPSSAIQFLTSM 140 L+ N+ ++ + + + + +R +S+ + L+ Sbjct: 28 HGLSRNTLDAYRRDLQLFAQWLAARHAASVDHASEPTLTEYIAARSDGKATSSNRRLSVF 87 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAF 196 R + WAVR+ A++P L + K+ ++ ++ + G + R Sbjct: 88 RRYYGWAVREHRAAVDPTLRIASAKQAPRFPSTLSEAQVEALLAAPDVDTPLGLRDRTML 147 Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------ELPDGFMKLLAM 247 E + SGLR S+ + N ++ G+ + + Sbjct: 148 ELMYASGLRVSELVTLKTVEVGLNEGVVRVTGKGSKERLVPFGEVAHGWIERYLRDARPA 207 Query: 248 T--PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGAT 303 + F+ M QF K A +A V + S H +R AT + GA Sbjct: 208 LLGARAADALFVTARGDGMTRQQFWNIIKRHAQQADVRVHLSPHTLRHAFATHLLNHGAD 267 Query: 304 AHELMATYGWKTVDQAETYTKGADRIRL 331 + G + + YT A R RL Sbjct: 268 LRVVQLLLGHSDISTTQIYTHVA-RERL 294 >gi|307942321|ref|ZP_07657672.1| putative integrase family protein [Roseibium sp. TrichSKD4] gi|307774607|gb|EFO33817.1| putative integrase family protein [Roseibium sp. TrichSKD4] Length = 356 Score = 136 bits (342), Expect = 5e-30, Method: Composition-based stats. Identities = 61/347 (17%), Positives = 114/347 (32%), Gaps = 26/347 (7%) Query: 17 RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP-TTLKWLI 75 R GK Y+R ++ + + ++++ E + P+ K TL L Sbjct: 14 RRGKWYVYYRANRHALVQ-GFDGTREELDKHLASPAILKLYSEIADRPKNKGFGTLGGLF 72 Query: 76 SEYRKSAHWGSLAVNSRISFESYFDQIIRKSG-DFDYRKITTKHIRSGVESRKHT--PSS 132 Y+ W LA ++ ++ D + ++ I I + P Sbjct: 73 EFYKTKERWKKLAPRTKADYQKVIDWLEERNRLKTPVIVIRPADIAMTRDKAAQDKFPKF 132 Query: 133 AIQFLTSMRVLFKWAVRQEY--VAINPCLSVERPKRKTEG-IRPWTKEDMQQFKSFWSEG 189 + + L + F V Y + N L + R + ++ R WT E+ + S + Sbjct: 133 SNETLALLSAAFSTGVEYGYAGLKTNSVLGIRRLHKNSKAANRRWTIEEWNRVWSVTPD- 191 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-----IFSIKTQKTGTIITVELPDGFMKL 244 ++ ++G R D HL+ +K VE+P L Sbjct: 192 -HLKMVLGLARWTGARGQDIAVLRWDHLERQGETYTFLEYIAKKNQAECVVEIPASLNAL 250 Query: 245 LAMTPIGKETFFINNDKQKMNAT--QFSIW--------FKAKATKAGVNKSAHGVRKFSA 294 L T N+ + + +W FK G + + HG+R A Sbjct: 251 LQSETRLTLTICKNSKGRPYPSENAMRKVWQEFKASAEFKEACPS-GQDLTLHGLRVTYA 309 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341 + + T E+ G K+ + Y +GAD + K + Sbjct: 310 SELREKDFTDEEIARAIGDKSTAMGKHYGRGADARKFARKVREAMDR 356 >gi|120602477|ref|YP_966877.1| tyrosine recombinase XerD [Desulfovibrio vulgaris DP4] gi|120562706|gb|ABM28450.1| tyrosine recombinase XerD subunit [Desulfovibrio vulgaris DP4] gi|311233936|gb|ADP86790.1| tyrosine recombinase XerD [Desulfovibrio vulgaris RCH1] Length = 321 Score = 136 bits (342), Expect = 5e-30, Method: Composition-based stats. Identities = 48/267 (17%), Positives = 91/267 (34%), Gaps = 21/267 (7%) Query: 85 GSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSGVESRKHTP--SSAIQFLTS 139 LA N+ ++ + ++ + + G V+ R+ + + L + Sbjct: 39 RGLAENTLAAYSADLIELQVFLEERGCLLAEVDEQTLFMHVVDLRRRGMAGRTLARHLAT 98 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRLA 195 +R F +AV + + +P L +E PK T+++M + G + R Sbjct: 99 LRGFFAFAVGEGELEADPALFLENPKLARNLPDVLTRDEMATILARPDLSDRLGFRDRTM 158 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------ELPDGFMKLLA 246 E + +GLR S+ C ++ G + + Sbjct: 159 LELMYAAGLRVSELCALRPLDFDAQAGVVRVFGKGAKERIVPVHHVSCALVTAYLRDWRP 218 Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATA 304 + F+N + ++ K +AG++K S H R AT + GA Sbjct: 219 AFSPVEPAMFLNRSGKGLSRQAVWKVVKRHVAEAGIHKDISPHTFRHSFATHLLEGGADL 278 Query: 305 HELMATYGWKTVDQAETYTK-GADRIR 330 + G + E YT ADR+R Sbjct: 279 RSVQLLLGHADISATEIYTHVQADRLR 305 >gi|78045063|ref|YP_359695.1| phage integrase family site specific recombinase [Carboxydothermus hydrogenoformans Z-2901] gi|77997178|gb|ABB16077.1| site-specific recombinase, phage integrase family [Carboxydothermus hydrogenoformans Z-2901] Length = 320 Score = 136 bits (342), Expect = 5e-30, Method: Composition-based stats. Identities = 44/284 (15%), Positives = 97/284 (34%), Gaps = 15/284 (5%) Query: 56 PKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT 115 PK + P T + L+ E+ + + + + ++ + + Sbjct: 2 PKSNVLRLPLSLKITWQDLLDEFILVKEAEGRSARTIHDYRFHIERFFNRFPHALESYTS 61 Query: 116 TKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175 + + K +PS+ + L ++ F W ++ Y+ NP ++R K IR + Sbjct: 62 LRQSVLKYFTEKASPSTRNKRLAHLKAFFSWCAKEGYIPANPAEGIKRAKEDITNIRHVS 121 Query: 176 KEDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN--IFSIKTQ-- 227 E++++ + G + + +G+R + + L I+ + Sbjct: 122 LEEVKKLLQQPDKKTYTGLRDYCLMLVQIDTGVRPGELLQVRGSDLSLESREIRIRPEVA 181 Query: 228 KTGTIITVELPD----GFMKLLAMTP---IGKETFFINNDKQKMNATQFSIWFKAKATKA 280 KT T+ + + L + P F + + +N ++ + KA Sbjct: 182 KTRIGRTLIITPFTAQQIARFLRIRPEHWGDDVPLFASENGITLNENDWAKRVRQYCKKA 241 Query: 281 GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 GV + +G+R A AG L G + Y + Sbjct: 242 GVKVTPYGLRHTFAIEFLKAGGDPFSLQRILGHTDLTMTRRYVR 285 >gi|260599234|ref|YP_003211805.1| site-specific tyrosine recombinase XerD [Cronobacter turicensis z3032] gi|260218411|emb|CBA33498.1| Tyrosine recombinase xerD [Cronobacter turicensis z3032] Length = 298 Score = 136 bits (342), Expect = 5e-30, Method: Composition-based stats. Identities = 44/270 (16%), Positives = 95/270 (35%), Gaps = 24/270 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESR---KHTPSSAIQFLTS 139 +LA NS ++ ++ + + +++ + R + +S + L++ Sbjct: 19 RNLAENSLSAYRRDLSMVVEWLHHRGLSLATVQSGDLQTLLAERVEGGYKATSTARMLSA 78 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195 +R LF+ R++ +P + PK + ++ + + + + Sbjct: 79 VRRLFQHLYREKIRDDDPSALLASPKLPQRLPKDLSEAQVDRLLQAPTVEEPIELRDKAM 138 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGKET 254 E L +GLR S+ + + ++ K V L + + + Sbjct: 139 LEVLYATGLRVSELVGLTMSDVSLRQGVVRVIGKGNKERLVPLGEEAVYWVEQYLTHGRP 198 Query: 255 FFIN----------NDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAG 301 + +N N ++M F K A AG++ S H +R AT + G Sbjct: 199 WLLNGQSLDILFPSNRARQMTRQTFWHRIKHYAQLAGIDSEKLSPHVLRHAFATHLLNHG 258 Query: 302 ATAHELMATYGWKTVDQAETYTKGA-DRIR 330 A + G + + YT A +R+R Sbjct: 259 ADLRVVQMLLGHSDLSTTQIYTHVATERLR 288 >gi|269213994|ref|ZP_05983350.2| tyrosine recombinase XerD [Neisseria cinerea ATCC 14685] gi|269144753|gb|EEZ71171.1| tyrosine recombinase XerD [Neisseria cinerea ATCC 14685] Length = 308 Score = 136 bits (342), Expect = 5e-30, Method: Composition-based stats. Identities = 52/278 (18%), Positives = 101/278 (36%), Gaps = 23/278 (8%) Query: 73 WLISEYRKSAHWGS--LAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRKH 128 LI ++ W L+ N+ S+ ++I R+ R + + V Sbjct: 21 DLIDRLLETL-WLDRRLSRNTLESYRRDLEKIARRLSLCGQTLRDADESDLAAAVYVAGE 79 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF--- 185 SS + L++ + L+ W R+ NP ++ PK T++ + + S Sbjct: 80 ERSSQARALSACKRLYIWMEREGMRTDNPTRLLKPPKIDKNIPTLITEQQISRLLSAPDT 139 Query: 186 -WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244 G + + E + +GLR S++ R +L + I T G + +P G + Sbjct: 140 DTPHGLRDKALLELMYATGLRVSEAVRLSFGNLDLDRGCITTLGKGNKQRI-VPMGRESV 198 Query: 245 ------------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRK 291 L + + F++ K ++ + K A++AG+ S H +R Sbjct: 199 YWVERYYKEARPLLLKGRSCDALFVSQKKTGISRQLAWMIVKEYASQAGIEHISPHSLRH 258 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 AT G + G ++ + YT A+ Sbjct: 259 AFATHLVQHGLDLRVVQDMLGHADLNTTQIYTHVANVR 296 >gi|15803430|ref|NP_289463.1| site-specific tyrosine recombinase XerD [Escherichia coli O157:H7 EDL933] gi|15833020|ref|NP_311793.1| site-specific tyrosine recombinase XerD [Escherichia coli O157:H7 str. Sakai] gi|168760022|ref|ZP_02785029.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4501] gi|217327493|ref|ZP_03443576.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. TW14588] gi|34222933|sp|Q8X574|XERD_ECO57 RecName: Full=Tyrosine recombinase xerD gi|12517420|gb|AAG58022.1|AE005519_8 site-specific recombinase [Escherichia coli O157:H7 str. EDL933] gi|13363238|dbj|BAB37189.1| site-specific recombinase [Escherichia coli O157:H7 str. Sakai] gi|189369440|gb|EDU87856.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. EC4501] gi|209760580|gb|ACI78602.1| site-specific recombinase [Escherichia coli] gi|217319860|gb|EEC28285.1| tyrosine recombinase XerD [Escherichia coli O157:H7 str. TW14588] gi|326339022|gb|EGD62837.1| Tyrosine recombinase XerD [Escherichia coli O157:H7 str. 1044] Length = 298 Score = 136 bits (342), Expect = 6e-30, Method: Composition-based stats. Identities = 40/265 (15%), Positives = 90/265 (33%), Gaps = 23/265 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDY-----RKITTKHIRSGVESRKHTPSSAIQFLTS 139 +LA N+ ++ ++ + + + + + +S+ + L++ Sbjct: 19 KNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGYKATSSARLLSA 78 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195 +R LF++ R+++ +P + PK + ++ +++ + + Sbjct: 79 VRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLIDQPLELRDKAM 138 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGKET 254 E L +GLR S+ + + ++ K V L + + L Sbjct: 139 LEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVYWLETYLEHGRP 198 Query: 255 FFIN----------NDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAG 301 + +N Q+M K A AG++ S H +R AT + G Sbjct: 199 WLLNGVSIDVLFPSQRAQQMTRQTLWHRIKHYAVLAGIDSEKLSPHVLRHAFATHLLNHG 258 Query: 302 ATAHELMATYGWKTVDQAETYTKGA 326 A + G + + YT A Sbjct: 259 ADLRVVQMLLGHSDLSTTQIYTHVA 283 >gi|225620975|ref|YP_002722233.1| site-specific recombinase XerD [Brachyspira hyodysenteriae WA1] gi|225215795|gb|ACN84529.1| site-specific recombinase XerD [Brachyspira hyodysenteriae WA1] Length = 297 Score = 136 bits (342), Expect = 6e-30, Method: Composition-based stats. Identities = 55/265 (20%), Positives = 96/265 (36%), Gaps = 28/265 (10%) Query: 85 GSLAVNSRISFES----YFDQIIRKSGDFDYRKITTKHIRSGVESRKH---TPSSAIQFL 137 L+ N+ S++ Y D + R K T K I + RK + + Sbjct: 10 KGLSSNTLESYKRDIVIYLDFLSRN--KKSILKATRKDIEKFLSERKEQGSKSRTVARNK 67 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPR 193 S+ L+K+ V + Y++ NP ++E + K T ++ + +G + + Sbjct: 68 VSIVNLYKFLVMENYISKNPTDNLEVIRLKRVLPESLTDTEVDDLLAVHNEKTDKGLRDK 127 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDGFMKLLAMTP-- 249 FE + SGLR S+ C + + + I K V + D + +L Sbjct: 128 AIFELMYSSGLRVSEICSLKIDDIFFEGKYLKI-CGKGKRERIVPINDRALDILQRYIQT 186 Query: 250 ------IGKET--FFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISAD 299 GK+T F+N K++ K K+ + K+ H +R AT Sbjct: 187 SRVIMVKGKKTSELFLNFRGDKISRVGIWKIVKEAMKKSKIEKNIYPHTLRHSFATHLIQ 246 Query: 300 AGATAHELMATYGWKTVDQAETYTK 324 GA + G + E YT Sbjct: 247 HGADLRAVQRMLGHSDITTTEIYTH 271 >gi|229170493|ref|ZP_04298144.1| Site-specific recombinase, phage integrase [Bacillus cereus AH621] gi|228612963|gb|EEK70137.1| Site-specific recombinase, phage integrase [Bacillus cereus AH621] Length = 352 Score = 136 bits (342), Expect = 6e-30, Method: Composition-based stats. Identities = 60/320 (18%), Positives = 117/320 (36%), Gaps = 43/320 (13%) Query: 53 GSTPKREYINSPRK----KPTTLKWLISEYRKSAHWGSLAVNSRISFE---SYFDQIIRK 105 G+ KR+ ++ T+ L ++ + A + ++ YF + Sbjct: 7 GTVSKRKGKRVKKELRTFTTHTIDDLFEKFYHAKVAEGRAERTLHQYKENFRYFTYFLDY 66 Query: 106 SG-DFDYRKITTKHIRSGVESRKH--------------------TPSSAIQFLTSMRVLF 144 G + ITT IR+ V K+ +PS+ L ++RV+F Sbjct: 67 KGLSRNIDTITTDVIRNYVVFMKNEKIQFEDHNYKPSDCKKVGLSPSTINTRLKTLRVMF 126 Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLL 200 ++ + +E + NP V+ E I T +++++ ++ S + + LL Sbjct: 127 RFLIDEELMESNPMKQVKDVNEPQEEIAVLTVDELRRLLDVPNKRSYSDFRNYVIMNLLL 186 Query: 201 YSGLRCSDSCRAGVQHLQ--NNIFSIK--TQKTGTIITVELPDGFMKLLAMTPIGKE--- 253 + LR S++ V + + +++ K+ V + + LL E Sbjct: 187 DTFLRISEALSLTVNDIDLSTKVITVRATVAKSRKARIVPIKNTTANLLKDLIKENEEFE 246 Query: 254 --TFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMA 309 FI N +++M+ F K A + G+ K H R AT+ +AG L Sbjct: 247 TDHVFITNYEEQMDRNHFRKRLKGYAKETGITKNVHPHLFRHTGATMFLEAGGDIRHLQM 306 Query: 310 TYGWKTVDQAETYTKGADRI 329 G + YT + + Sbjct: 307 LLGHADLRMVMRYTHLSKQA 326 >gi|308234475|ref|ZP_07665212.1| integrase family protein [Atopobium vaginae DSM 15829] gi|328944068|ref|ZP_08241533.1| tyrosine recombinase XerD [Atopobium vaginae DSM 15829] gi|327492037|gb|EGF23811.1| tyrosine recombinase XerD [Atopobium vaginae DSM 15829] Length = 337 Score = 136 bits (342), Expect = 6e-30, Method: Composition-based stats. Identities = 42/294 (14%), Positives = 101/294 (34%), Gaps = 34/294 (11%) Query: 65 RKKPTTLKWLISEYRKS-----AHWGSLAVNSRISFE----SYFDQIIRKSGDF-DYRKI 114 + + + + +S +L+ N+ ++E +Y +I+ S D D Sbjct: 27 KPDDDSYSAYVQQLMESFIQHLMTTQNLSPNTTRAYETDLKAYVRWLIKNSYDLLDISHK 86 Query: 115 TTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174 + + + + ++ + + L+++R +KW VR+ + ++ PK Sbjct: 87 QLRSYLAQLYAARYASRTINRHLSAIRAWYKWLVRKGLTKKDSAAALASPKIPKTLPHVL 146 Query: 175 TKEDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKT 229 ++ +++ + E G + R E L +G R S++ V + + ++ K Sbjct: 147 SESSIEKLLATCQEDTVCGLRDRALLELLYATGCRISEAAHLCVSDISFDSKQVRLFGKG 206 Query: 230 GTIITVELPDGFMKLLA-----------------MTPIGKETFFINNDKQKMNATQFSIW 272 V + ++L + FI+ + M+ Sbjct: 207 SKERIVPIYPECARILHMYLTTARPVLLSKQKNQAQAQTNQHVFISTRGKAMSDQALRYV 266 Query: 273 FKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 F+ + + + H +R AT GA + G ++ + YT Sbjct: 267 FEHYMRLSHLQEIATPHTMRHSFATELLSHGADLRSVQELLGHASLATTQIYTH 320 >gi|254884996|ref|ZP_05257706.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] gi|254837789|gb|EET18098.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] Length = 407 Score = 136 bits (342), Expect = 6e-30, Method: Composition-based stats. Identities = 46/224 (20%), Positives = 87/224 (38%), Gaps = 20/224 (8%) Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR--PWTKEDMQQFKSFWSEGS 190 A + + ++A+ + + +PC SV K ++ +R + E++Q+ + + Sbjct: 190 AKSIYQRFKKVIRYAIDHDVMLKDPCKSVT-CKVDSQMLRKDVLSPEEIQKLAACHYDNE 248 Query: 191 QP--RLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTG-----TIITVELPDGF 241 P R AF F LY GLR D +++ N + + KT + + + L DG Sbjct: 249 NPNVRRAFIFCLYCGLRFCDVKDLTYKNVDYANRLLKFEQSKTKGHSASSGVVIPLNDGL 308 Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299 + ++ TP K + K +AG++K S H R A + Sbjct: 309 LSIIGETPADKNCLIFDLP----TYESCCKSVKRWVKRAGIDKHISWHCARHSFAVNILN 364 Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343 GA + + G + E YT+ D +L + + + Sbjct: 365 NGANIKTVASLLGHSGLKHTEKYTRAVD--KLKEEAINSLPELK 406 >gi|303236694|ref|ZP_07323275.1| site-specific recombinase, phage integrase family [Prevotella disiens FB035-09AN] gi|302483198|gb|EFL46212.1| site-specific recombinase, phage integrase family [Prevotella disiens FB035-09AN] Length = 407 Score = 136 bits (342), Expect = 6e-30, Method: Composition-based stats. Identities = 58/312 (18%), Positives = 107/312 (34%), Gaps = 45/312 (14%) Query: 34 RLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWG-SLAVNSR 92 RL F+ Y + + T K + + K + EY + + ++ Sbjct: 114 RLKKDRSINFLDYYQAYIDSYTKK--DLRMIKIALNRFKDFLKEYYPLYEFSIKPDLITK 171 Query: 93 ISFESYFDQI-IRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQE 151 E + + + R G+ A + + ++A+ E Sbjct: 172 EMMERFVEYLQSRSVGE-----------------------GAKSIYQRFKKVVRYAIDHE 208 Query: 152 YVAINPCLSVERPKRKTEGIR--PWTKEDMQQFKSFWSEGSQP--RLAFEFLLYSGLRCS 207 + +PC V K + +R + +++Q E P R AF LY GLR Sbjct: 209 VMLKDPCKGV-VCKVDEQILRKDVLSMDEIQSLIQCHYENENPNVRRAFILCLYCGLRFC 267 Query: 208 DSCRAGVQHLQ--NNIFSIKTQKTG-----TIITVELPDGFMKLLAMTPIGKETFFINND 260 D +++ N++ + KT + + + L DG + L+ P +T N Sbjct: 268 DVKDLTYKNIDYTNHLLKFEQNKTKGHSANSGVVIPLNDGLLSLIGEAPEDLDTSIFNLP 327 Query: 261 KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318 K +AG+NK S H R A + GA + + G + Sbjct: 328 ----TYESCCKSVKRWVKRAGINKHISWHCARHSFAVNILNNGANIKTVASLLGHSGLKH 383 Query: 319 AETYTKGADRIR 330 E YT+ D+++ Sbjct: 384 TEKYTRAVDKLK 395 >gi|66046068|ref|YP_235909.1| Phage integrase:Phage integrase, N-terminal SAM-like [Pseudomonas syringae pv. syringae B728a] gi|63256775|gb|AAY37871.1| Phage integrase:Phage integrase, N-terminal SAM-like [Pseudomonas syringae pv. syringae B728a] Length = 344 Score = 135 bits (341), Expect = 6e-30, Method: Composition-based stats. Identities = 57/331 (17%), Positives = 117/331 (35%), Gaps = 26/331 (7%) Query: 11 VTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSAL--TGSTPKREYINSPRKKP 68 + K + R G + YY+ G R +P + Y A+ K ++ ++ Sbjct: 14 LRKRKQRSGVVYYYYDIGGSPRKEIPLGSD------YGMAIVEYAKLEKSRTSSALVQQV 67 Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESR 126 T ++ +Y + + ++ Q+++ D I +H+ + R Sbjct: 68 LTFAYVAQKYMIEV-VPTKSPATQKDNARELKQLLKFFDDPPAPLEAIEPQHVVQYLRQR 126 Query: 127 KHT-PSSAIQFLTSMRVLFKWAVRQEYVA-INPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 T P A + + ++ +A Y A NPC V+ K +++M Sbjct: 127 GKTAPVRANREKALLSAIWNFARSAGYTALANPCAGVKGHKEVGRDHYI--EDEMFALVY 184 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244 +E R A + +G R +D+ + + +++ ++ KT +E+ + Sbjct: 185 GHAE-QPLRDALDLFYLTGQRIADTLKMDERDIRDGRLWVQQGKTNAKRRIEITGELKVV 243 Query: 245 LAMTPIGKE-------TFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKFSA 294 + KE + ++ Q M ++ F A AGV K +R + Sbjct: 244 IDRIMTRKEGHRIRTSRLIVMDNGQPMTSSMLRGRFDAAREAAGVEKGEFQMRDLRAKAG 303 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKG 325 T A++ + G TV E Y + Sbjct: 304 TDKAESSGDILQARDQLGHTTVVMTENYIRK 334 >gi|16761825|ref|NP_457442.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|16766345|ref|NP_461960.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|29143312|ref|NP_806654.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|62181554|ref|YP_217971.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161615991|ref|YP_001589956.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167550072|ref|ZP_02343829.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167994107|ref|ZP_02575199.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168231149|ref|ZP_02656207.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168236103|ref|ZP_02661161.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168261794|ref|ZP_02683767.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168463788|ref|ZP_02697705.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|194446221|ref|YP_002042295.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194470177|ref|ZP_03076161.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194471635|ref|ZP_03077619.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194738371|ref|YP_002115993.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197249597|ref|YP_002147956.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197265258|ref|ZP_03165332.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|198244272|ref|YP_002217021.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200387943|ref|ZP_03214555.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205353968|ref|YP_002227769.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207858307|ref|YP_002244958.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|213051988|ref|ZP_03344866.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213425823|ref|ZP_03358573.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213646964|ref|ZP_03377017.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213857737|ref|ZP_03384708.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|224584833|ref|YP_002638631.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|238909843|ref|ZP_04653680.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|60416276|sp|P0A2P6|XERD_SALTY RecName: Full=Tyrosine recombinase xerD gi|60416277|sp|P0A2P7|XERD_SALTI RecName: Full=Tyrosine recombinase xerD gi|25299270|pir||AB0872 site-specific integrase/recombinase [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16421595|gb|AAL21919.1| site-specific recombinase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|16504127|emb|CAD02874.1| site-specific integrase/recombinase [Salmonella enterica subsp. enterica serovar Typhi] gi|29138946|gb|AAO70514.1| site-specific integrase/recombinase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|62129187|gb|AAX66890.1| recombinase, site-specific [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161365355|gb|ABX69123.1| hypothetical protein SPAB_03791 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194404884|gb|ACF65106.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194456541|gb|EDX45380.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194457999|gb|EDX46838.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194713873|gb|ACF93094.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195633587|gb|EDX52001.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197213300|gb|ACH50697.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197243513|gb|EDY26133.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197290855|gb|EDY30209.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197938788|gb|ACH76121.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199605041|gb|EDZ03586.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205273749|emb|CAR38744.1| site-specific integrase/recombinase [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205324693|gb|EDZ12532.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205327977|gb|EDZ14741.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205334414|gb|EDZ21178.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205349044|gb|EDZ35675.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206710110|emb|CAR34465.1| site-specific integrase/recombinase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224469360|gb|ACN47190.1| tyrosine recombinase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|261248176|emb|CBG26012.1| Tyrosine recombinase xerD [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267995198|gb|ACY90083.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301159600|emb|CBW19119.1| Tyrosine recombinase xerD [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312914065|dbj|BAJ38039.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321225719|gb|EFX50773.1| Tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322613442|gb|EFY10383.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322621034|gb|EFY17892.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322624098|gb|EFY20932.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322628163|gb|EFY24952.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322633282|gb|EFY30024.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322636140|gb|EFY32848.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322639478|gb|EFY36166.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322647589|gb|EFY44078.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322648773|gb|EFY45220.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322653828|gb|EFY50154.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322657934|gb|EFY54202.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322664037|gb|EFY60236.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322668952|gb|EFY65103.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322673054|gb|EFY69161.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322677955|gb|EFY74018.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322681131|gb|EFY77164.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322687939|gb|EFY83906.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|322716035|gb|EFZ07606.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323131400|gb|ADX18830.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323194865|gb|EFZ80052.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323196616|gb|EFZ81764.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323202684|gb|EFZ87724.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323207829|gb|EFZ92775.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323212619|gb|EFZ97436.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323214898|gb|EFZ99646.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323222629|gb|EGA06994.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323225092|gb|EGA09344.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323230614|gb|EGA14732.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323235035|gb|EGA19121.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323239074|gb|EGA23124.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323244568|gb|EGA28574.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323247183|gb|EGA31149.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323253334|gb|EGA37163.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323256359|gb|EGA40095.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323262465|gb|EGA46021.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323267439|gb|EGA50923.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323269157|gb|EGA52612.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|326624789|gb|EGE31134.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326629082|gb|EGE35425.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 298 Score = 135 bits (341), Expect = 6e-30, Method: Composition-based stats. Identities = 43/265 (16%), Positives = 90/265 (33%), Gaps = 23/265 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESR---KHTPSSAIQFLTS 139 +LA N+ ++ ++ +++ + R + +S+ + L++ Sbjct: 19 RNLAENTLSAYRRDLSMVVAWLHHRGKTLATAQADDLQTLLAERVEGGYKATSSARLLSA 78 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195 MR F+ R++Y +P + PK + ++ +++ + + Sbjct: 79 MRRFFQHLYREKYREDDPSAQLASPKLPQRLPKDLSEAQVERLLQAPLIDQPLELRDKAM 138 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGKET 254 E L +GLR S+ + + ++ K V L + + L Sbjct: 139 LEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVYWLETYLEHGRP 198 Query: 255 FFIN----------NDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAG 301 + +N Q+M F K A AG++ S H +R AT + G Sbjct: 199 WLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHAFATHLLNHG 258 Query: 302 ATAHELMATYGWKTVDQAETYTKGA 326 A + G + + YT A Sbjct: 259 ADLRVVQMLLGHSDLSTTQIYTHVA 283 >gi|167893119|ref|ZP_02480521.1| site-specific tyrosine recombinase XerD [Burkholderia pseudomallei 7894] gi|167917844|ref|ZP_02504935.1| site-specific tyrosine recombinase XerD [Burkholderia pseudomallei BCC215] gi|237811111|ref|YP_002895562.1| tyrosine recombinase XerD [Burkholderia pseudomallei MSHR346] gi|254296371|ref|ZP_04963828.1| tyrosine recombinase XerD [Burkholderia pseudomallei 406e] gi|157805883|gb|EDO83053.1| tyrosine recombinase XerD [Burkholderia pseudomallei 406e] gi|237504621|gb|ACQ96939.1| tyrosine recombinase XerD [Burkholderia pseudomallei MSHR346] Length = 333 Score = 135 bits (341), Expect = 6e-30, Method: Composition-based stats. Identities = 53/307 (17%), Positives = 96/307 (31%), Gaps = 28/307 (9%) Query: 52 TGSTPKREYINSPRKKPTTLKWLISE----YRKSAHW--GSLAVNSRISFESYFDQIIRK 105 G P + WL S A W L+ N+ ++ + Sbjct: 17 AGRAPAPPADRPVDALAASPAWLDSRASIDLFCDAMWLEHGLSRNTLDAYRRDLQLFAQW 76 Query: 106 SGDF---DYRKITTKHIRSGVESRKH-TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV 161 + + + +R +S+ + L+ R + WAVR+ A++P L + Sbjct: 77 LAARYAASVDHASEPTLTEYIAARSDGKATSSNRRLSVFRRYYGWAVREHRAAVDPTLRI 136 Query: 162 ERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL 217 K+ ++ ++ + G + R E + SGLR S+ + Sbjct: 137 ASAKQAPRFPSTLSEAQVEALLAAPDVDTPLGLRDRTMLELMYASGLRVSELVTLKTVEV 196 Query: 218 QNNIFSIKTQKTGTIITV---------ELPDGFMKLLAMT--PIGKETFFINNDKQKMNA 266 N ++ G+ + + + F+ M Sbjct: 197 GLNEGVVRVTGKGSKERLVPFGEVAHGWIERYLRDARPALLGARAADALFVTARGDGMTR 256 Query: 267 TQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 QF K A +A V + S H +R AT + GA + G + + YT Sbjct: 257 QQFWNIIKRHAQQADVRVHLSPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTH 316 Query: 325 GADRIRL 331 A R RL Sbjct: 317 VA-RERL 322 >gi|313159128|gb|EFR58503.1| tyrosine recombinase XerD [Alistipes sp. HGB5] Length = 298 Score = 135 bits (341), Expect = 7e-30, Method: Composition-based stats. Identities = 51/261 (19%), Positives = 98/261 (37%), Gaps = 22/261 (8%) Query: 85 GSLAVNSRISFESYFDQ----IIRKSGDFDYRKIT---TKHIRSGVESRKHTPSSAIQFL 137 L+ N+ S+ Q I+R+ D RK+ + + + R +S + L Sbjct: 23 KRLSQNTVESYMRDLRQFAHFILRQY-DVAPRKVEGTMIERYMAWLYDRGREKTSQARCL 81 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS----FWSEGSQPR 193 +R F + + + + +P V+ PK T +++ + ++G + Sbjct: 82 CGIRSFFNFLLVNDQIETSPAEFVDTPKFGRPLPDILTTDEIDSIIATVDMRSTKGLRDS 141 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPD-------GFMKLL 245 E L GLR S+ + L I+ K V + + +++ Sbjct: 142 AMLEVLYSCGLRVSELTSLRLSDLFFGEGYIRVIGKGNKQRLVPISNTARDKIQRYLEER 201 Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGAT 303 G+ET F+NN ++ K +AG++K S H R AT + GA+ Sbjct: 202 RSARSGEETVFLNNRGGQLTRVMVFTILKRAVERAGIDKHISPHTFRHSFATHLLEGGAS 261 Query: 304 AHELMATYGWKTVDQAETYTK 324 ++ G +++ E YT Sbjct: 262 IRQVQEMLGHESILTTEIYTH 282 >gi|325299560|ref|YP_004259477.1| integrase family protein [Bacteroides salanitronis DSM 18170] gi|324319113|gb|ADY37004.1| integrase family protein [Bacteroides salanitronis DSM 18170] Length = 407 Score = 135 bits (341), Expect = 7e-30, Method: Composition-based stats. Identities = 44/224 (19%), Positives = 86/224 (38%), Gaps = 20/224 (8%) Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR--PWTKEDMQQFKSFWSEGS 190 A + + ++A+ + + +PC V K ++ +R + E++Q+ + + Sbjct: 190 AKSIFQRFKKVVRYAIDHDVMLKDPCKGVT-CKVDSQILRKDVLSPEEIQKLIACHYDNE 248 Query: 191 QP--RLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTG-----TIITVELPDGF 241 P R AF F LY GLR D +++ N + + KT + + + L DG Sbjct: 249 NPTVRRAFIFCLYCGLRFCDVKDLTYKNVDYANRLLKFEQSKTKGHSASSGVVIPLNDGL 308 Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299 + ++ P K + + K +AG++K S H R A + Sbjct: 309 LSIIGEAPADKNCLIFDLP----SYESCCKSVKRWVKRAGIDKHISWHCARHSFAVNILN 364 Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343 GA + + G + E YT+ D +L + + + Sbjct: 365 NGANIKTVASLLGHSGLKHTEKYTRAVD--KLKEEAINSLPELK 406 >gi|170018860|ref|YP_001723814.1| site-specific tyrosine recombinase XerD [Escherichia coli ATCC 8739] gi|169753788|gb|ACA76487.1| tyrosine recombinase XerD [Escherichia coli ATCC 8739] Length = 298 Score = 135 bits (341), Expect = 7e-30, Method: Composition-based stats. Identities = 43/270 (15%), Positives = 95/270 (35%), Gaps = 24/270 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDY-----RKITTKHIRSGVESRKHTPSSAIQFLTS 139 +LA N+ ++ ++ + + + + + +S+ + L++ Sbjct: 19 KNLAENTLNAYCRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGYKATSSARLLSA 78 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195 +R LF++ R+++ +P + PK + ++ +++ + + Sbjct: 79 VRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLIDQPLELRDKAM 138 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGKET 254 E L +GLR S+ + + ++ K V L + + L Sbjct: 139 LEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVYWLETYLEHGRP 198 Query: 255 FFIN----------NDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAG 301 + +N Q+M F K A AG++ S H +R AT + G Sbjct: 199 WLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHAFATHLLNHG 258 Query: 302 ATAHELMATYGWKTVDQAETYTKGA-DRIR 330 A + G + + YT A +R+R Sbjct: 259 ADLRVVQMLLGHSDLSTTQIYTHVATERLR 288 >gi|327312659|ref|YP_004328096.1| site-specific recombinase, phage integrase family [Prevotella denticola F0289] gi|326944074|gb|AEA19959.1| site-specific recombinase, phage integrase family [Prevotella denticola F0289] Length = 407 Score = 135 bits (341), Expect = 7e-30, Method: Composition-based stats. Identities = 60/361 (16%), Positives = 124/361 (34%), Gaps = 52/361 (14%) Query: 16 TRHGKIIYYF--RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73 +G + Y + ++ + + + Y+ A + +R+ + ++ Sbjct: 41 DDNGNPVLYETGKMIGKPKVHIKHNRRKENLQLYLIAKPRTPAERQQNKETLELAAKIRA 100 Query: 74 LISE--------YR----KSAHWGSLAVN-----SRISFE-------SYFDQIIRKSGDF 109 + YR +S ++ ++ + D + + + Sbjct: 101 EREQQFKESMLGYRLKKDRSINFLDYYQAYIDSYTKKDLRMIKIALNRFKDFLKEQYPVY 160 Query: 110 DY-------RKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE 162 ++ K KH ++SR A + + ++A+ E + +PC V Sbjct: 161 EFSIKPELITKDMMKHFVEYLQSRSVG-EGAKSIYQRFKKVVRYAIDHEVMQKDPCKGV- 218 Query: 163 RPKRKTEGIR--PWTKEDMQQFKSFWSEGSQP--RLAFEFLLYSGLRCSDSCRAGVQHLQ 218 K + +R + +++Q E P R AF LY GLR D +++ Sbjct: 219 VCKVDDQVLRKDVLSMDEIQSLIQCHYENENPNVRRAFILCLYCGLRFCDVKDLTYKNVD 278 Query: 219 --NNIFSIKTQKTG-----TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI 271 N + + KT + + + L DG + L+ P + N + S Sbjct: 279 YTNRLLKFEQNKTKGHSAHSGVIIPLNDGLLSLIGEAPEDLSSSIFNLP----SYESCSK 334 Query: 272 WFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 K +AG+NK S H R A + GA + + G + E YT+ D++ Sbjct: 335 SVKRWVKRAGINKHISWHCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYTRAVDKL 394 Query: 330 R 330 + Sbjct: 395 K 395 >gi|308187997|ref|YP_003932128.1| Tyrosine recombinase xerD [Pantoea vagans C9-1] gi|308058507|gb|ADO10679.1| Tyrosine recombinase xerD [Pantoea vagans C9-1] Length = 297 Score = 135 bits (341), Expect = 7e-30, Method: Composition-based stats. Identities = 48/270 (17%), Positives = 99/270 (36%), Gaps = 24/270 (8%) Query: 85 GSLAVNSRISFESYFDQI-----IRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139 +LA N+ S+ + + + + + + +S+ + L++ Sbjct: 18 RNLAQNTLSSYRQDLQTLTGWLTHHQLTLLSVTPLDLQQFLAERLEGGYKATSSARLLSA 77 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK----SFWSEGSQPRLA 195 MR LF++ R++ +P + PK + ++ +++ + + + Sbjct: 78 MRRLFQYLYREKLRPDDPSALLSAPKLPQRLPKDLSEAQVERLLQAPDTNIPLELRDKAM 137 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVEL-------PDGFMKLLAM 247 E L +GLR S+ + + ++ K V L + +M+ Sbjct: 138 LEVLYATGLRVSELTGLTLSDISLRQGVVRVIGKGDKERLVPLGEEAVYWLEQYMEHGRP 197 Query: 248 TPIGKETF---FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAG 301 + +T F +N Q+M F K AT AG++ S H +R AT + G Sbjct: 198 WLLNGQTLDVMFPSNRAQQMTRQTFWHRIKHYATLAGIDSEKLSPHVMRHAFATHLLNHG 257 Query: 302 ATAHELMATYGWKTVDQAETYTKGA-DRIR 330 A + G + + YT A +R+R Sbjct: 258 ADLRVVQMLLGHSDLSTTQIYTHVATERLR 287 >gi|326799953|ref|YP_004317772.1| Tyrosine recombinase xerC [Sphingobacterium sp. 21] gi|326550717|gb|ADZ79102.1| Tyrosine recombinase xerC [Sphingobacterium sp. 21] Length = 298 Score = 135 bits (341), Expect = 7e-30, Method: Composition-based stats. Identities = 53/279 (18%), Positives = 104/279 (37%), Gaps = 25/279 (8%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVE-- 124 + I ++++ SLA NS ++ +++ + + D I T+ IR +E Sbjct: 3 WESAIKDFKQYLRLERSLAKNSIEAYLHDVEKLRQHALYSHKKDPNAILTQDIRDFLEWI 62 Query: 125 -SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 S + S + L+ ++ + + + + NP +E P+ + + ++ Sbjct: 63 YSLGMSAHSQARVLSGIKTFYHYLTLEGAMEHNPAALIEAPRLGRKLPDTLSIVEIDALI 122 Query: 184 SF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELP 238 EG + + E L GLR S+ + +L I I+ T K + + Sbjct: 123 GAIDLSTPEGLRNKAMLEVLYSCGLRVSELVNLKISNLFLEIEFIRVTGKGNKERLIPIG 182 Query: 239 DGFMKLLAM-----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--S 285 +K L + P ++ F+N ++ + K A K G+ K S Sbjct: 183 HSAIKHLQIYLQHTRKEGPQKPGMEDYVFLNRRGSPLSRVMVFLIIKELAIKVGLKKTIS 242 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H R AT + GA + G +++ E YT Sbjct: 243 PHTFRHSFATHLIEGGADLRAVQDMLGHESISTTEIYTH 281 >gi|313199950|ref|YP_004038608.1| tyrosine recombinase xerc [Methylovorus sp. MP688] gi|312439266|gb|ADQ83372.1| tyrosine recombinase XerC [Methylovorus sp. MP688] Length = 298 Score = 135 bits (341), Expect = 7e-30, Method: Composition-based stats. Identities = 44/270 (16%), Positives = 95/270 (35%), Gaps = 18/270 (6%) Query: 73 WLISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR---SGVESRKH 128 + +Y +H L+ +R +++ ++ +G+ + +T HIR + + R Sbjct: 3 DYLVQYLDHLSHERRLSPLTRENYQRDLKVLLELNGEVPLQNMTGTHIRRHVATLHGRNL 62 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 S + L++ R F++ +++ + NPC + PK + + Q S E Sbjct: 63 GGRSIARMLSAWRGFFEFLIQRHGFSANPCQGIRAPKSPKSLPHALSPDQAVQLVSIDDE 122 Query: 189 GS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-ELPDGFMKL 244 + + E SGLR ++ + L +I G + + M Sbjct: 123 DTLAQRDHAMLELFYSSGLRLAELVNLNLDALNLGEGTITVTGKGNKTRIVPVGQHAMNA 182 Query: 245 LAM-------TPIGK-ETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSA 294 L PI F++ ++++ + A + G+N H +R A Sbjct: 183 LQAWLAIRSGLPIQDTSALFLSRLGKRLSRRAVQYRLQQWAIRQGINIRVHPHMLRHSFA 242 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTK 324 + + + G + + YT Sbjct: 243 SHVLQSSGDLRAVQEMLGHANISTTQVYTH 272 >gi|319655065|ref|ZP_08009133.1| hypothetical protein HMPREF1013_05756 [Bacillus sp. 2_A_57_CT2] gi|317393243|gb|EFV74013.1| hypothetical protein HMPREF1013_05756 [Bacillus sp. 2_A_57_CT2] Length = 279 Score = 135 bits (341), Expect = 7e-30, Method: Composition-based stats. Identities = 48/259 (18%), Positives = 99/259 (38%), Gaps = 11/259 (4%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH--TPSS 132 + Y+ + + ++ +I+ GD ITT+ I+ + SS Sbjct: 7 WNLYKADKQIQGYSSQTLKVYKVQMSLLIKYFGDIKITDITTESIKLYLGEVAAELKASS 66 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192 + ++ LFKWA ++YV++NP +++ PK ++ + T+E+++ + + Sbjct: 67 LCHRIRFIKSLFKWAQEEKYVSVNPVSTIKEPKPESRIPKFLTEEEIELLREACKT-TFE 125 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE----LPDGFMKLLAM 247 + FEF+ +G R + + + S+ K V + L Sbjct: 126 KALFEFMYSTGCRIGEVVKLDRHSINMAEQSVIVFGKGKKEREVYFNTRCSIWLKRYLEE 185 Query: 248 TPIGKETFFINNDK-QKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATA 304 ++ F+ +M+ Q K + +AG+NK H +R AT + GA Sbjct: 186 RYDDQQALFVTIRAPHRMSIAQMRYVIKQISKRAGINKCIHPHQLRHSYATTLINNGAPL 245 Query: 305 HELMATYGWKTVDQAETYT 323 + G + + Y Sbjct: 246 EVIQNLMGHEKSETTRVYA 264 >gi|257080952|ref|ZP_05575313.1| prophage lambdaba03 [Enterococcus faecalis E1Sol] gi|256988982|gb|EEU76284.1| prophage lambdaba03 [Enterococcus faecalis E1Sol] Length = 301 Score = 135 bits (341), Expect = 7e-30, Method: Composition-based stats. Identities = 47/278 (16%), Positives = 106/278 (38%), Gaps = 24/278 (8%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGVESRKH 128 + +I E+ + + +++S KS + + +I KHI+S + + Sbjct: 3 WEDIILEFCMDVTVKGFSKITIKNYKSKLRNTANFFKSINVEPSQIEKKHIKSWIIDMQE 62 Query: 129 T---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 S+ ++ ++ LF + + ++Y+ NP + +ER K + + I P +++Q + Sbjct: 63 KEMQASTINVSVSRLKKLFDYMLIEKYIEYNPFVDIERLKEQRKVIYPLNDYEIKQMLTV 122 Query: 186 WSEGSQPRLA------FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD 239 + +A ++ GLR S+ C + + NN I+ K V + Sbjct: 123 AKKHPYKHIAQRNVVILMLMIECGLRISEVCEIRDEDIMNNQIIIRKSKNNKDRAVAVSP 182 Query: 240 GFMKLLAMTPI---------GKETFFINNDKQKMNATQFSIWFKAKATKAGV-NK---SA 286 K + TF ++N +K+N + + + + S Sbjct: 183 ILKKEIIKYHRIKKRKYGLLEGNTFIVSNLGKKLNEKSIWQIMQEIKKQIDIRDCVRFSG 242 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R A++ G + L G +++ + Y + Sbjct: 243 HTLRHTYASMQLRNGLDIYTLSLNMGHSSIEMTQRYVQ 280 >gi|134299829|ref|YP_001113325.1| tyrosine recombinase XerC [Desulfotomaculum reducens MI-1] gi|134052529|gb|ABO50500.1| tyrosine recombinase XerC subunit [Desulfotomaculum reducens MI-1] Length = 298 Score = 135 bits (341), Expect = 7e-30, Method: Composition-based stats. Identities = 42/247 (17%), Positives = 82/247 (33%), Gaps = 15/247 (6%) Query: 98 YFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINP 157 ++ I K + + + + + ++ + L S R FK+ + NP Sbjct: 40 VLNKPIEKMDHASINSSLVREFLAYLRQKNLSRATVARKLASWRAFFKFLYNERLAYTNP 99 Query: 158 CLSVERPKRKTEGIRPWTKEDMQQFKS---FWSEGSQPRLAFEFLLYSGLRCSDSCRAGV 214 L V PKR+ + +E+ +Q G + R E L +G+R S+ + Sbjct: 100 MLRVANPKREKRLPKFLYQEETKQLVEAPDHSPLGIRDRALLELLYATGIRVSELVALDL 159 Query: 215 QHLQNNIFSIKTQKTGT-IITVELPDGFMKLLA---------MTPIGKETFFINNDKQKM 264 ++ I+ G+ V + + M E F+N ++ Sbjct: 160 SNIDLARGYIRVMGKGSKERVVPFHQSAVAAMKEYCRNARPKMVIKDCEAVFVNYKGTRL 219 Query: 265 NATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 + + G+ S H +R AT D GA + G ++ + Y Sbjct: 220 SDRGIRKIVDKYCQRLGMKLNVSPHTIRHSFATHLLDNGADLRSVQELLGHVSLSTTQIY 279 Query: 323 TKGADRI 329 T + Sbjct: 280 THVTKKK 286 >gi|269926944|ref|YP_003323567.1| integrase family protein [Thermobaculum terrenum ATCC BAA-798] gi|269790604|gb|ACZ42745.1| integrase family protein [Thermobaculum terrenum ATCC BAA-798] Length = 310 Score = 135 bits (341), Expect = 8e-30, Method: Composition-based stats. Identities = 48/286 (16%), Positives = 111/286 (38%), Gaps = 31/286 (10%) Query: 88 AVNSRISFESYF----DQIIRKSGDFDYRKITTKHIRSGV------ESRKHTPSSAIQFL 137 + N+ ++++ D + K + +T+ I+ + + R + PS+ + + Sbjct: 22 SNNTTAAYKNDILQFHDWLQGKDHINSWAAVTSSDIQDYLLYLKGNQDRAYAPSTQARKM 81 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-----SEGSQP 192 +++ F++ V + V NP + P+ + + + +++ + EG + Sbjct: 82 AAIKSFFQFLVAKSVVDQNPASDLISPRVQKYWPKAISVQEVNMLLAAASDSETPEGIRD 141 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA------ 246 R E L +GLR S+ V + + +K G V L + +L Sbjct: 142 RAMLEVLYRTGLRVSELVSLNVDDINLDESHLKCIGRGKTRKVPLSQPAVDVLKLYLERS 201 Query: 247 ----MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAG 301 + ++ F+N+ Q++ F + KA A++AG+ + H +R A D G Sbjct: 202 RPLLVRGQDEQALFVNHRGQRLTRQGFWLILKAYASEAGIKGITPHTLRHSFAAHMIDGG 261 Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347 ++ G ++ + Y R +S +I + ++ Sbjct: 262 IDLRQVQEWLGHASITTTQVY-----RQIKSNSHSEKIIDIKSREE 302 >gi|34541361|ref|NP_905840.1| integrase/recombinase XerD [Porphyromonas gingivalis W83] gi|34397678|gb|AAQ66739.1| integrase/recombinase XerD [Porphyromonas gingivalis W83] Length = 308 Score = 135 bits (341), Expect = 8e-30, Method: Composition-based stats. Identities = 50/267 (18%), Positives = 97/267 (36%), Gaps = 23/267 (8%) Query: 87 LAVNSRISFESYFDQI-----IRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMR 141 L NS ++ ++ + +H + + + S + ++ ++ Sbjct: 20 LTPNSVDAYLKDLSKLDSYLTAENISFREVSYENLQHFVAELYDLGISARSIARIISGVK 79 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLAFE 197 F++ V +EY+ +P +E P+ T E++ + + + R E Sbjct: 80 SFFRFLVLEEYIEADPTELLEGPRIGVHLPTVLTIEEVDRLIGSIDPAAQGAQRNRAILE 139 Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPD----GFMKLL----AMT 248 L GLR S+ +L N ++ G V + + + L T Sbjct: 140 ILYSCGLRVSELTSLKFSNLFLNESFLRIDGKGRKQRLVPMSETAITELKRYLSDPERPT 199 Query: 249 PI--GKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATA 304 P+ +E F++N + ++ + K A +AG+ KS H R AT + GA Sbjct: 200 PVLGQEEYVFLSNRGKAISRIMVFVMIKKLAEEAGITKSISPHTFRHSFATHLLEGGANL 259 Query: 305 HELMATYGWKTVDQAETYTKGADRIRL 331 + G + + E YT DR L Sbjct: 260 QAIQLMLGHENIATTEIYTH-IDRETL 285 >gi|170765975|ref|ZP_02900786.1| tyrosine recombinase XerD [Escherichia albertii TW07627] gi|170125121|gb|EDS94052.1| tyrosine recombinase XerD [Escherichia albertii TW07627] Length = 298 Score = 135 bits (341), Expect = 8e-30, Method: Composition-based stats. Identities = 40/265 (15%), Positives = 91/265 (34%), Gaps = 23/265 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDY-----RKITTKHIRSGVESRKHTPSSAIQFLTS 139 +LA N+ ++ ++ + + + + + +S+ + L++ Sbjct: 19 KNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGYKATSSARLLSA 78 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195 +R LF++ R+++ +P + P+ + ++ +++ + + Sbjct: 79 VRRLFQYLYREKFREDDPSAYLASPRLPQRLPKDLSEAQVERLLQAPLIDQPLELRDKAM 138 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGKET 254 E L +GLR S+ + + ++ K V L + + L Sbjct: 139 LEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVYWLETYLEHGRP 198 Query: 255 FFIN----------NDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAG 301 + +N Q+M F K A AG++ S H +R AT + G Sbjct: 199 WLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHAFATHLLNHG 258 Query: 302 ATAHELMATYGWKTVDQAETYTKGA 326 A + G + + YT A Sbjct: 259 ADLRVVQMLLGHSDLSTTQIYTHVA 283 >gi|222055852|ref|YP_002538214.1| tyrosine recombinase XerD [Geobacter sp. FRC-32] gi|221565141|gb|ACM21113.1| tyrosine recombinase XerD [Geobacter sp. FRC-32] Length = 295 Score = 135 bits (341), Expect = 8e-30, Method: Composition-based stats. Identities = 49/270 (18%), Positives = 95/270 (35%), Gaps = 24/270 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIR---SGVESRKHTPSSAIQFLT 138 L N+ ++ + G D IT + +G++ R +P S + L+ Sbjct: 16 KGLTKNTLEAYSRDLSVYLDFLAGQGRLDLDHITAMDVIEHLAGLKERGLSPRSRARALS 75 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRL 194 ++++ ++ + + + NP + +E P+ + +++ + Sbjct: 76 AVKMFHRFLMVENHCPNNPAVIIEAPRSLNRLPDVLSGREVELLLDSARSADLNDVRDLA 135 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFM----------K 243 E L +GLR S+ ++ + + + T G V L + + Sbjct: 136 MLEVLYATGLRVSELVALKLRDVNLDAGYLLTMGKGEKERLVPLGETARLATAEYLRSAR 195 Query: 244 LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAG 301 + A E FI+ M F K +A AG+ KS H +R AT + G Sbjct: 196 VKADRKGDCEILFISRLGDGMTRQAFWNIIKKRAAAAGIRKSISPHSLRHSFATHLLENG 255 Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRL 331 A + G + + YT R RL Sbjct: 256 ADLRSVQIMLGHADLSSTQIYTH-VTRERL 284 >gi|309793966|ref|ZP_07688391.1| tyrosine recombinase XerD [Escherichia coli MS 145-7] gi|308122373|gb|EFO59635.1| tyrosine recombinase XerD [Escherichia coli MS 145-7] Length = 298 Score = 135 bits (341), Expect = 8e-30, Method: Composition-based stats. Identities = 43/270 (15%), Positives = 95/270 (35%), Gaps = 24/270 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDY-----RKITTKHIRSGVESRKHTPSSAIQFLTS 139 +LA N+ ++ ++ + + + + + +S+ + L++ Sbjct: 19 KNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGYKATSSARLLSA 78 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195 +R LF++ R+++ +P + PK + ++ +++ + + Sbjct: 79 VRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLIDQPLELRDKAM 138 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGKET 254 E L +GLR S+ + + ++ K V L + + L Sbjct: 139 LEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVSLGEEAVYWLETYLEHGRP 198 Query: 255 FFIN----------NDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAG 301 + +N Q+M F K A AG++ S H +R AT + G Sbjct: 199 WLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHAFATHLLNHG 258 Query: 302 ATAHELMATYGWKTVDQAETYTKGA-DRIR 330 A + G + + YT A +R+R Sbjct: 259 ADLRVVQMLLGHSDLSTTQIYTHVATERLR 288 >gi|240141172|ref|YP_002965652.1| putative phage integrase [Methylobacterium extorquens AM1] gi|240011149|gb|ACS42375.1| putative phage integrase [Methylobacterium extorquens AM1] Length = 389 Score = 135 bits (341), Expect = 8e-30, Method: Composition-based stats. Identities = 62/392 (15%), Positives = 114/392 (29%), Gaps = 71/392 (18%) Query: 7 LPPFVTKERTRHGKIIYYFRKGHGRRIRLP------YPHESTFIPAYMSALTGSTPKREY 60 LP V + + +GK YY+ G G + P F + Sbjct: 3 LPSEVRRVKKPNGKCYYYWHPGRGTKREGKAIALGSDPSSPEFWE---------RIRGLR 53 Query: 61 INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII--RKSGDFDYRKITTKH 118 I ++ W++ YR+S + S A +++ S+ + ++ G + +H Sbjct: 54 IAGTTAPAGSIAWVVGLYRESEAFRSCAESTQASYAVHLNRFANPEGWGHLPAEALEPRH 113 Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAI---NPCLSVERPKRKTEGIRPWT 175 + + +S K TP A Q L L WA ++ NP V G PW Sbjct: 114 VLALRDSMKETPVMANQMLAVGGTLCSWAAPFGHLGRRPFNPFEVVPGLDIPDRGHVPWP 173 Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS---IKTQKTGTI 232 + + + + + R SD R G H +KT+K Sbjct: 174 VWAQEYVLAKGPADLVRLVRLGVM--TCQRESDLVRMGPVHRDGAAIWCRPVKTRKKRRA 231 Query: 233 ITVELP-------------DGFMKLLAMTPIGKET----FFINNDKQKMNATQFSIWFKA 275 + L + T + Q + + Sbjct: 232 FRIPLTTTDALLLEQWTGEPILFENTRWKAPIARTHPDLYLFTPRAQAYTPDRIRARWTR 291 Query: 276 K-ATKAGVNK---------------------------SAHGVRKFSATISADAGATAHEL 307 T+AG + HG+R + AG ++ Sbjct: 292 WLETEAGTELCGKWRKWLATQVERYDWDIEPEEARGPTIHGLRGTGVLVRLSAGHDPQQV 351 Query: 308 MATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339 G ++ + Y + D++ + RR+ Sbjct: 352 SNDIG-MSLPMVQRYIRFRDQVEVAEAGRRRL 382 >gi|188994249|ref|YP_001928501.1| putative integrase/recombinase XerD [Porphyromonas gingivalis ATCC 33277] gi|188593929|dbj|BAG32904.1| putative integrase/recombinase XerD [Porphyromonas gingivalis ATCC 33277] Length = 308 Score = 135 bits (341), Expect = 8e-30, Method: Composition-based stats. Identities = 50/267 (18%), Positives = 97/267 (36%), Gaps = 23/267 (8%) Query: 87 LAVNSRISFESYFDQI-----IRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMR 141 L NS ++ ++ + +H + + + S + ++ ++ Sbjct: 20 LTPNSVDAYLKDLSKLDSYLTAENISFREVSYENLQHFVAELYDLGISARSIARIISGVK 79 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLAFE 197 F++ V +EY+ +P +E P+ T E++ + + + R E Sbjct: 80 SFFRFLVLEEYIEADPTELLEGPRIGVHLPTVLTIEEVDRLIGAIDPAAQGAQRNRAILE 139 Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPD----GFMKLL----AMT 248 L GLR S+ +L N ++ G V + + + L T Sbjct: 140 ILYSCGLRVSELTSLKFSNLFLNESFLRIDGKGRKQRLVPMSETAITELKRYLSDPERPT 199 Query: 249 PI--GKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATA 304 P+ +E F++N + ++ + K A +AG+ KS H R AT + GA Sbjct: 200 PVLGQEEYVFLSNRGKAISRIMVFVMIKKLAEEAGITKSISPHTFRHSFATHLLEGGANL 259 Query: 305 HELMATYGWKTVDQAETYTKGADRIRL 331 + G + + E YT DR L Sbjct: 260 QAIQLMLGHENIATTEIYTH-IDRETL 285 >gi|83720485|ref|YP_441282.1| site-specific tyrosine recombinase XerD [Burkholderia thailandensis E264] gi|257140051|ref|ZP_05588313.1| site-specific tyrosine recombinase XerD [Burkholderia thailandensis E264] gi|83654310|gb|ABC38373.1| tyrosine recombinase XerD [Burkholderia thailandensis E264] Length = 333 Score = 135 bits (341), Expect = 8e-30, Method: Composition-based stats. Identities = 55/329 (16%), Positives = 105/329 (31%), Gaps = 26/329 (7%) Query: 30 GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP--RKKPTTLKWLISEYRKSAHWGSL 87 R R+P P ++ +A + P E SP R T++ L Sbjct: 2 ARAARIPAPGPASGGAGRGAAPSADRPADELAASPAWRDSRTSIDLFCDAMWLE---HGL 58 Query: 88 AVNSRISFESYFD---QIIRKSGDFDYRKITTKHIRSGVESRKH-TPSSAIQFLTSMRVL 143 + N+ ++ Q + + + + +R +S+ + L+ R Sbjct: 59 SRNTLDAYRRDLQLFAQWLAARHAVSLDRTERPMLEGYIAARSDGKATSSNRRLSVFRRY 118 Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAFEFL 199 + WAVR+ A++P L + K+ ++ ++ + G + R E + Sbjct: 119 YGWAVREHRAAVDPTLRIASAKQAPRFPSTLSEAQVEALLAAPDVDTPLGLRDRTMLELM 178 Query: 200 LYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------ELPDGFMKLLAMT-- 248 SGLR S+ + N ++ G+ + + Sbjct: 179 YASGLRVSELVTLKTVEVGLNEGVVRVTGKGSKERLVPFGEVAHGWIERYLRDARPALLG 238 Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHE 306 + F+ M QF K A +A V + S H +R AT + GA Sbjct: 239 ARAADALFVTARGDGMTRQQFWNIIKRHAQQADVRAHLSPHTLRHAFATHLLNHGADLRV 298 Query: 307 LMATYGWKTVDQAETYTKGADRIRLGIKN 335 + G + + YT A + Sbjct: 299 VQLLLGHSDISTTQIYTHVARERLKALHA 327 >gi|149276499|ref|ZP_01882643.1| site-specific recombinase [Pedobacter sp. BAL39] gi|149233019|gb|EDM38394.1| site-specific recombinase [Pedobacter sp. BAL39] Length = 292 Score = 135 bits (341), Expect = 8e-30, Method: Composition-based stats. Identities = 48/265 (18%), Positives = 94/265 (35%), Gaps = 25/265 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDF----DYRKITTKH---IRSGVESRKHTPSSAIQFL 137 +L+VNS ++ S ++ D +++ T S V P + + + Sbjct: 11 RALSVNSISAYISDVKKLFEYFDSTGKSYDIQEVNTSDLKLFISWVNELGMLPVTQARVI 70 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPR 193 + ++ F + ++ ++ +P S+E P+ + E++ EG + R Sbjct: 71 SGIKSYFSFLSLEQLISSDPASSLETPRLNKKLPDTLNIEEINAMIQAIDHSKAEGLRSR 130 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLA------ 246 E L GLR S+ + + ++ N IK K + + +K + Sbjct: 131 AMLEVLYGCGLRVSELIQMKISNIFINSEFIKVVGKGDKERIIPIGSAALKYIMMYINEV 190 Query: 247 -----MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299 + ++ F+N + K A AG+ K S H R AT + Sbjct: 191 RIEVPIKKGQEDFVFLNRRGTALTRMLIFNMIKGLAKDAGIQKNISPHTFRHSFATHLIE 250 Query: 300 AGATAHELMATYGWKTVDQAETYTK 324 GA + G ++ E YT Sbjct: 251 GGADLRAVQEMLGHSSITTTEIYTH 275 >gi|329960376|ref|ZP_08298801.1| site-specific recombinase, phage integrase family [Bacteroides fluxus YIT 12057] gi|328532814|gb|EGF59596.1| site-specific recombinase, phage integrase family [Bacteroides fluxus YIT 12057] Length = 407 Score = 135 bits (340), Expect = 8e-30, Method: Composition-based stats. Identities = 60/352 (17%), Positives = 116/352 (32%), Gaps = 31/352 (8%) Query: 8 PPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYI----NS 63 P F K R + Y R + M + + Sbjct: 58 PKFAVKHNRRKENLSLYL--IDKPRTPAERQQNKETLELAMRIRAEREQEFKESMLGYRL 115 Query: 64 PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG----DFDYRKITTKHI 119 + + Y S + + +I+ + D + + IT + + Sbjct: 116 KKDRAVNFLDYFQAYINSYTKKDIRMV-QIALSRFKDFLKEQYPMNEFSIKPELITKEMM 174 Query: 120 RSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR--PWT 175 V + A + + ++A+ + + +PC SV K ++ +R + Sbjct: 175 EKFVAYLQSRSVGEGAKSIYQRFKKVIRYAIDHDVMLKDPCKSVT-CKVDSQMLRKDVLS 233 Query: 176 KEDMQQFKSFWSEGSQP--RLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTG- 230 E++Q+ + + P R AF F LY GLR D +++ N + + KT Sbjct: 234 PEEIQKLIACHYDNENPTIRRAFIFCLYCGLRFCDVKDLTYKNVDYANRLLKFEQSKTKG 293 Query: 231 ----TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-- 284 + + + L DG + ++ P K + K +AG++K Sbjct: 294 HSASSGVVIPLNDGLLSIIGEAPADKNCLIFDLP----TYESCCKSVKRWVKRAGIDKHI 349 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336 S H R A + GA + + G + E YT+ D+++ NS Sbjct: 350 SWHCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYTRAVDKLKEEAINS 401 >gi|114778675|ref|ZP_01453487.1| tyrosine recombinase XerD [Mariprofundus ferrooxydans PV-1] gi|114551037|gb|EAU53599.1| tyrosine recombinase XerD [Mariprofundus ferrooxydans PV-1] Length = 299 Score = 135 bits (340), Expect = 8e-30, Method: Composition-based stats. Identities = 41/265 (15%), Positives = 83/265 (31%), Gaps = 19/265 (7%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTK-----HIRSGVESRKHTPSSAIQFLTS 139 + + S+ S D + + + P++ + ++ Sbjct: 23 RGWSPQTTSSYRSDLLHADSYFVDHHTSLMQADGKAILDYLAKLGRDGMKPTTIQRRRSA 82 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195 + F W Q +P + + ++ + ++ D+++ + G + R Sbjct: 83 LSTWFTWLQDQNLREDHPARHLPKLRKSRPLPKMMSEHDVERLLAAPETEDPVGLRDRCM 142 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMK------LLAMT 248 E L +G+R S+ ++ + ++ K + + + LL Sbjct: 143 LELLYATGVRVSELVSLTRGQVEMDAGLLRVIGKGDKERLIPFGEEAGQWLQQWLLLRPA 202 Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHE 306 F M F + K AT AG+ S H +R AT + GA Sbjct: 203 KPASPYLFAGRGGHAMTRQNFWLRIKRYATMAGIMPLPSPHTLRHAFATHLLNHGADLRA 262 Query: 307 LMATYGWKTVDQAETYTKGADRIRL 331 + G V E YT R R+ Sbjct: 263 VQMLLGHAHVTTTEIYTH-VSRARM 286 >gi|323190786|gb|EFZ76055.1| phage integrase family protein [Escherichia coli RN587/1] Length = 339 Score = 135 bits (340), Expect = 8e-30, Method: Composition-based stats. Identities = 60/335 (17%), Positives = 104/335 (31%), Gaps = 39/335 (11%) Query: 7 LPPFVTKERTRHGKIIYYFRKGHGR-----RIRLPYPHESTFIPAYMSALTGSTPKREYI 61 LPP V Y K G R+ + Y E Sbjct: 13 LPPRVRS------NGYSYVWKPEGSTRTIGLGRVRETSVAKVWQNY-----------ELE 55 Query: 62 NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121 + T+ L + S + LA ++ + + ++ G + + +R Sbjct: 56 KAKLHNIMTVAKLWHMFMDSPAFTELAPRTQKDYRQHQRALLAVFGKVLADNVKIEQVRI 115 Query: 122 GVESRK-HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 ++ R + + A L S+ ++ W + YV NPC V + K + T E Sbjct: 116 FMDKRGLESKTQANHELASLSRVYGWGYERGYVKNNPCKGVRKFTLKARTVYI-TDEQYA 174 Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240 + Q R+A E R D Q + + I+ KTG E Sbjct: 175 AIYA--EAIPQLRIAMEISYLCAARLGDVLELKWQDIMDKGIYIEQNKTGAKQIKEWSPR 232 Query: 241 FMKLLA----MTPIGKETFFINNDKQKMNATQFSIWF----KAKATKAGVN--KSAHGVR 290 + +T E K+ A + W+ +A KAGV + H + Sbjct: 233 LRTAIQLARNVTSGTCEYVINTTKGGKVIAKTLNNWWNQAKRAAEQKAGVPFGCNFHDI- 291 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 K + ++ + G KT +Q Y + Sbjct: 292 KAKGISDYE--GSSRDKQIFSGHKTENQVLIYDRK 324 >gi|303242648|ref|ZP_07329122.1| integrase family protein [Acetivibrio cellulolyticus CD2] gi|302589787|gb|EFL59561.1| integrase family protein [Acetivibrio cellulolyticus CD2] Length = 298 Score = 135 bits (340), Expect = 8e-30, Method: Composition-based stats. Identities = 44/255 (17%), Positives = 95/255 (37%), Gaps = 19/255 (7%) Query: 89 VNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA----IQFLTSMRVLF 144 N F+ + + + +TT IR + K + A + + + + Sbjct: 26 DNYTSDFKQFLNFLRVNGIQPKLNTVTTPIIRRYLAHLKTDKNYAVETIRRRVHCLSSYY 85 Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS-----QPRLAFEFL 199 K+ + QEY+ NP ++ PK + + E++Q + + S + FE Sbjct: 86 KFLMEQEYIMKNPMFAIHAPKSPETIPKYLSIEEIQLLLTMPQKYSPDSVLRNLCIFECF 145 Query: 200 LYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLL-----AMTPIGK 252 L +G+R + + I +++ K + + + + L P+ Sbjct: 146 LMTGMRRQELLDLNWDDIDFGEKIITVRNGKGKKQRVIPMTEPLISDLWKYLQTRLPLTN 205 Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKFSATISADAGATAHELMA 309 FI+ +++AT F+ K+G++K + H +R A+ A GA+ + Sbjct: 206 HALFISAKGNRLSATPLEQTFRLYMRKSGLDKKGYTIHTLRHTYASHLALNGASILSIQK 265 Query: 310 TYGWKTVDQAETYTK 324 G ++ + Y Sbjct: 266 LLGHSDLNSTQIYAH 280 >gi|262382819|ref|ZP_06075956.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] gi|262295697|gb|EEY83628.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] Length = 407 Score = 135 bits (340), Expect = 8e-30, Method: Composition-based stats. Identities = 46/224 (20%), Positives = 86/224 (38%), Gaps = 20/224 (8%) Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR--PWTKEDMQQFKSFWSEGS 190 A + + ++A+ + + NPC SV K ++ +R + E++Q+ + + Sbjct: 190 AKSIYQRFKKVIRYAIEHDVMLKNPCKSVT-CKVDSQMLRKDVLSPEEIQKLVACHYDNE 248 Query: 191 QP--RLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTG-----TIITVELPDGF 241 P R AF F LY GLR D +++ N + + KT + + + L DG Sbjct: 249 NPNVRRAFVFCLYCGLRFCDVKDLTYKNVDYANRLLKFEQSKTKGHSASSGVVIPLNDGL 308 Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299 + ++ P K + K +AG++K S H R A + Sbjct: 309 LSIIGEAPADKNCLIFDLP----TYESCCKSVKRWVKRAGIDKHISWHCARHSFAVNILN 364 Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343 GA + + G + E YT+ D +L + + + Sbjct: 365 NGANIKTVASLLGHSGLKHTEKYTRAVD--KLKEEAINSLPELK 406 >gi|255065181|ref|ZP_05317036.1| tyrosine recombinase XerD [Neisseria sicca ATCC 29256] gi|255050602|gb|EET46066.1| tyrosine recombinase XerD [Neisseria sicca ATCC 29256] Length = 291 Score = 135 bits (340), Expect = 8e-30, Method: Composition-based stats. Identities = 45/273 (16%), Positives = 100/273 (36%), Gaps = 19/273 (6%) Query: 74 LISEYRKSAHWGS-LAVNSRISFESYFDQI--IRKSGDFDYRKITTKHIRSGVESRKHTP 130 LI + +S L+ N+ + ++I ++G + + V + Sbjct: 5 LIDKLLESLWLQDRLSHNTLQGYRRDLEKIAARLEAGGHTWLDAEAADLADAVYAADEKH 64 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----W 186 SS + L++ + L+ W E NP ++ PK+ + T+ ++ + Sbjct: 65 SSQARALSACKRLYAWLEETERRTDNPTRFLKAPKQTQKLPTLITEAQIENLLAAPDTDT 124 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-ELPDGFMKLL 245 G + + E + +GLR +++ + + L N I+T G + + + + + + Sbjct: 125 PHGLRDKALLEVMYATGLRVTEAVKLQLGDLDLNRGCIRTIGKGDKLRIVPMGEEAVYWV 184 Query: 246 AMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSA 294 F++ + ++ + K A AG+ S HG+R A Sbjct: 185 ERYCAESRPLLLKNKICDEVFVSQKRSGISRQLAWMIVKNYAEAAGITSLSPHGLRHAFA 244 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGAD 327 T + G + G ++ + YT A+ Sbjct: 245 THLVNHGVDLRAVQLMLGHANINTTQIYTHVAN 277 >gi|1916335|gb|AAC45774.1| site-specific recombinase [Salmonella enterica subsp. enterica serovar Typhimurium] Length = 298 Score = 135 bits (340), Expect = 8e-30, Method: Composition-based stats. Identities = 42/265 (15%), Positives = 90/265 (33%), Gaps = 23/265 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESR---KHTPSSAIQFLTS 139 +LA N+ ++ ++ +++ + R + +++ + L++ Sbjct: 19 RNLAENTLSAYRRDLSMVVAWLHHRGKTLATAQADDLQTLLAERVEGGYKATTSARLLSA 78 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195 MR F+ R++Y +P + PK + ++ +++ + + Sbjct: 79 MRRFFQHLYREKYREDDPSAQLASPKLPQRLPKDLSEAQVERLLQAPLIDQPLELRDKAM 138 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGKET 254 E L +GLR S+ + + ++ K V L + + L Sbjct: 139 LEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVYWLETYLEHGRP 198 Query: 255 FFIN----------NDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAG 301 + +N Q+M F K A AG++ S H +R AT + G Sbjct: 199 WLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHAFATHLLNHG 258 Query: 302 ATAHELMATYGWKTVDQAETYTKGA 326 A + G + + YT A Sbjct: 259 ADLRVVQMLLGHSDLSTTQIYTHVA 283 >gi|161523917|ref|YP_001578929.1| site-specific tyrosine recombinase XerD [Burkholderia multivorans ATCC 17616] gi|189351322|ref|YP_001946950.1| site-specific tyrosine recombinase XerD [Burkholderia multivorans ATCC 17616] gi|160341346|gb|ABX14432.1| tyrosine recombinase XerD [Burkholderia multivorans ATCC 17616] gi|189335344|dbj|BAG44414.1| tyrosine recombinase [Burkholderia multivorans ATCC 17616] Length = 316 Score = 135 bits (340), Expect = 9e-30, Method: Composition-based stats. Identities = 49/268 (18%), Positives = 89/268 (33%), Gaps = 22/268 (8%) Query: 85 GSLAVNSRISFES---YFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSSAIQFLTSM 140 LA N+ ++ F Q + + D + + +R +S+ + L+ Sbjct: 39 HGLARNTLDAYRRDLTLFSQWLAATHDAALDAADETMLTGYIAARSDGKATSSNRRLSVF 98 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAF 196 R + WAVR+ + +P L + K+ ++ ++ G + R Sbjct: 99 RRYYGWAVREHRASADPTLRIASAKQAARFPSTLSEAQVEALLGAPDIATPLGLRDRTML 158 Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------ELPDGFMKLLAM 247 E + SGLR S+ + N ++ G+ + + + Sbjct: 159 ELMYASGLRVSELVTLKTVEVGLNEGVVRVMGKGSKERLVPFGEVAHGWIERYLREARPA 218 Query: 248 T--PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGAT 303 + F+ M QF K A A V + S H +R AT + GA Sbjct: 219 LLGARAADALFVTARGDGMTRQQFWNIIKRHAQHADVRAHLSPHTLRHAFATHLLNHGAD 278 Query: 304 AHELMATYGWKTVDQAETYTKGADRIRL 331 + G + + YT A R RL Sbjct: 279 LRVVQLLLGHADISTTQIYTHVA-RERL 305 >gi|167569023|ref|ZP_02361897.1| site-specific tyrosine recombinase XerD [Burkholderia oklahomensis C6786] Length = 325 Score = 135 bits (340), Expect = 9e-30, Method: Composition-based stats. Identities = 53/270 (19%), Positives = 93/270 (34%), Gaps = 26/270 (9%) Query: 85 GSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIRSGVESRKH-TPSSAIQFLTSM 140 L+ N+ ++ Q + + + + +R +S+ + L+ Sbjct: 48 HGLSRNTLDAYRRDLQLFAQWLAAQHAENVDHANEAMLTGYIAARSDGKATSSNRRLSVF 107 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAF 196 R + WAVR+ A++P L + K+ ++ ++ + G + R Sbjct: 108 RRYYGWAVREHRAAVDPTLRIASAKQAPRFPSTLSEAQVEALLAAPDVDTPLGLRDRTML 167 Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-------------ITVELPDGFMK 243 E + SGLR S+ + N ++ G+ I L DG Sbjct: 168 ELMYASGLRVSELVTLKSVEVGLNEGVVRVTGKGSKERLVPFGEVAHGWIERYLRDGRPA 227 Query: 244 LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAG 301 LL + F+ M QF K A +A V + S H +R AT + G Sbjct: 228 LLGA--RAADALFVTARGDGMTRQQFWNIIKRHAQQADVRAHLSPHTLRHAFATHLLNHG 285 Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRL 331 A + G + + YT A R RL Sbjct: 286 ADLRVVQLLLGHSDISTTQIYTHVA-RERL 314 >gi|188578603|ref|YP_001915532.1| site-specific tyrosine recombinase XerD [Xanthomonas oryzae pv. oryzae PXO99A] gi|58425056|gb|AAW74093.1| integrase-recombinase XerD [Xanthomonas oryzae pv. oryzae KACC10331] gi|188523055|gb|ACD61000.1| tyrosine recombinase XerD [Xanthomonas oryzae pv. oryzae PXO99A] Length = 336 Score = 135 bits (340), Expect = 9e-30, Method: Composition-based stats. Identities = 51/317 (16%), Positives = 107/317 (33%), Gaps = 38/317 (11%) Query: 47 YMSALTGSTPKREYINSPRKKP------TTLKWLISEYRKSAHWGSLAVNSRISFESYFD 100 Y A++ S+P + + P ++ + + +A + S+ + Sbjct: 10 YAVAMSASSPAERRQLAQQLPPLQAADAGVIERFLDRFWAE---QGVARQTLESYRRDLE 66 Query: 101 QIIR-----KSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAI 155 + R G ++ ++P S + L+++R + W +R + Sbjct: 67 GLARWRAGAGGGLLGIDRVALFDYLRWRAQANYSPRSTARLLSTLRAFYGWCLRDGVRSD 126 Query: 156 NPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAFEFLLYSGLRCSDSCR 211 +P ++ P+ + T+ ++ + G + R E + +GLR S+ Sbjct: 127 DPTALIDPPQLPRSLPKALTESQIEALLAAPEVDTPAGLRDRAMLELMYAAGLRVSELVN 186 Query: 212 AGVQHLQNNIFSIKTQKTGTI-ITVELPDGFMKLLA----------------MTPIGKET 254 + ++ G+ V L + L G+ Sbjct: 187 LPAVGVNLRQGVLRVTGKGSKDRLVPLGEESQHWLERYLREARPLLAANKPVAAVDGQVP 246 Query: 255 FFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHELMATY 311 FI+ +Q ++ F K A AG++ S HG+R AT + GA L Sbjct: 247 LFIDAARQALSRQHFWALVKRYAAVAGIDPAMVSPHGLRHSFATHLLNHGADLRALQMLL 306 Query: 312 GWKTVDQAETYTKGADR 328 G ++ + YT A + Sbjct: 307 GHSSLSTTQIYTLVARQ 323 >gi|154686593|ref|YP_001421754.1| site-specific tyrosine recombinase XerD [Bacillus amyloliquefaciens FZB42] gi|154352444|gb|ABS74523.1| XerD [Bacillus amyloliquefaciens FZB42] Length = 296 Score = 135 bits (340), Expect = 1e-29, Method: Composition-based stats. Identities = 44/264 (16%), Positives = 97/264 (36%), Gaps = 24/264 (9%) Query: 85 GSLAVNSRISFESYFDQ----IIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI---QFL 137 L+ N+ +S+E + + +T HI ++ K + S + L Sbjct: 16 RGLSQNTMMSYERDLKSYSLFLTETLQITSWNDVTRLHIIQYLKHIKDSGKSGKTSARHL 75 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPR 193 S+R ++ +R++ +P + +E K + + ++++ G + + Sbjct: 76 ASIRSFHQFLLREKAADKDPSVHIETQKTERTLPKVLALHEVERLLDTPKLDSPFGLRDK 135 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAM---TP 249 E L +G+R S+ + + + ++ K V + + + Sbjct: 136 AMLELLYATGIRVSEMIELKLSDVHLTMGFVRCFGKGRKERIVPIGEAASHAIEAYIEKA 195 Query: 250 IGK-------ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300 GK E F+N+ ++++ F K A +AG+ K + H +R AT + Sbjct: 196 RGKLLKKNVTEALFLNHHGRQISRQGFWKNLKKIALEAGIKKELTPHTLRHSFATHLLEN 255 Query: 301 GATAHELMATYGWKTVDQAETYTK 324 GA + G + + YT Sbjct: 256 GADLRAVQEMLGHADISTTQIYTH 279 >gi|256391647|ref|YP_003113211.1| tyrosine recombinase XerD [Catenulispora acidiphila DSM 44928] gi|256357873|gb|ACU71370.1| tyrosine recombinase XerD [Catenulispora acidiphila DSM 44928] Length = 306 Score = 135 bits (340), Expect = 1e-29, Method: Composition-based stats. Identities = 46/271 (16%), Positives = 98/271 (36%), Gaps = 25/271 (9%) Query: 85 GSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIRSGVESRKHTPSS-AIQFLTSM 140 L+ N+ ++ + ++ I + + + S + +S A + ++++ Sbjct: 23 RGLSANTLAAYRRDLSRYRVFLDTRDRANFSDIDRADVSAFLASLQDGAASSAARTMSAV 82 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRLAF 196 R L ++AV + +V ++ V P+ + +D+++ + + R Sbjct: 83 RGLHRFAVAEGWVGVDVSDDVAPPQVPMRLPKALPLDDIERLLAATEIDEPMALRDRALL 142 Query: 197 EFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVEL--------PDGFMKLLAM 247 EFL +G R S++ V + + + K G V + D ++L Sbjct: 143 EFLYSTGARVSEAVALDVDDIDREDRTVVLDGKGGKQRLVPVGSYACRAVDDYLVRLRPE 202 Query: 248 TPIGKET-----FFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300 + F+N ++ A A + G+ S H +R AT D Sbjct: 203 LTRKARSGNGGALFLNARGGRLTRQGAWTVLGAVAERVGLAGRVSPHTLRHSFATHLLDG 262 Query: 301 GATAHELMATYGWKTVDQAETYTK-GADRIR 330 GA + G + + YT+ DR+R Sbjct: 263 GADIRTVQELLGHSSATTTQIYTRVTVDRLR 293 >gi|33595884|ref|NP_883527.1| site-specific tyrosine recombinase XerD [Bordetella parapertussis 12822] gi|33565963|emb|CAE36514.1| integrase/recombinase [Bordetella parapertussis] Length = 310 Score = 135 bits (340), Expect = 1e-29, Method: Composition-based stats. Identities = 49/306 (16%), Positives = 97/306 (31%), Gaps = 35/306 (11%) Query: 62 NSPRKKPTTLKWLISE-YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD---------- 110 ++P L I + + LA N+ ++ + + Sbjct: 4 SAPLASQADLDAFIDAVWLEDG----LAANTLAAYRRDLSAFAQWLENPACHPGLATGHS 59 Query: 111 YRKITTKHIRSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168 R+ I + +R + ++A + L ++R + WA+R+ +PCL++ K+ Sbjct: 60 LREAGKGDIEAWFAARHAESRATTANRRLAALRRFYAWALRERLTPSDPCLTLVTAKQPP 119 Query: 169 EGIRPWTKEDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224 + ++ + G + R E L +GLR S+ + N + Sbjct: 120 RLPKTLSEAQVDALLQAPDLDTARGLRDRAMLETLYATGLRVSELVSVKALDVSLNEGVV 179 Query: 225 KT--QKTGTIITVELPDGFMKLLAM----------TPIGKETFFINNDKQKMNATQFSIW 272 + K G V L + + F+ + M+ F Sbjct: 180 RVVMGKGGKDRLVPLGAEAAHWIERYAGSARPELLGARVADALFVTARAEPMSRQAFWQL 239 Query: 273 FKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 K A A + S H +R AT + GA + G + + YT A Sbjct: 240 VKKYALAADIRAPLSPHVLRHAFATHLLNHGADLRVVQMLLGHADISTTQIYTHVACERL 299 Query: 331 LGIKNS 336 + + Sbjct: 300 KALHAA 305 >gi|253681771|ref|ZP_04862568.1| tyrosine recombinase XerD [Clostridium botulinum D str. 1873] gi|253561483|gb|EES90935.1| tyrosine recombinase XerD [Clostridium botulinum D str. 1873] Length = 292 Score = 135 bits (340), Expect = 1e-29, Method: Composition-based stats. Identities = 45/269 (16%), Positives = 95/269 (35%), Gaps = 20/269 (7%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK-----HIRSGVESRKHT 129 +S+Y + L+ N+ +++ + + + + ++ + Sbjct: 5 LSKYIEDMLKKELSKNTIEAYKRDLLKFAKFLNKRHENILESDMVSIMAYVQILKKERKA 64 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS-- 187 SS I+ L ++R +K+ ++ NP ++ E PK K T +++ +F S Sbjct: 65 DSSIIRSLVAIRNFYKFLIKTGENVDNPLINYEVPKNKRTLPEILTVDEVDKFLSAPDCS 124 Query: 188 --EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK-TGTIITVE-------- 236 +G + + E + +G++ S+ + + + + IK + + Sbjct: 125 EYKGIRDKAMLELMYATGMKVSELLKITIFDVNLKLSYIKCKGAKDKERIIPIGSYAVNC 184 Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSA 294 L + M E F N KM F K A A +NK + +R A Sbjct: 185 LNEYLKVRDKMNADNSELLFCNLRGGKMTRQGFWKIVKKYAKDANINKKIDSYTLRHSFA 244 Query: 295 TISADAGATAHELMATYGWKTVDQAETYT 323 GA + G T+ + Y+ Sbjct: 245 VHLLQNGADMKSVQELLGHNTIATTQIYS 273 >gi|168242831|ref|ZP_02667763.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|194449828|ref|YP_002047028.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194408132|gb|ACF68351.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|205338181|gb|EDZ24945.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] Length = 298 Score = 135 bits (340), Expect = 1e-29, Method: Composition-based stats. Identities = 43/265 (16%), Positives = 90/265 (33%), Gaps = 23/265 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESR---KHTPSSAIQFLTS 139 +LA N+ ++ ++ +++ + R + +S+ + L++ Sbjct: 19 RNLAENTLSAYRRDLSMVVAWLHHRGKTLATAQADDLQTLLAERVEGGYKATSSARLLSA 78 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195 MR F+ R++Y +P + PK + ++ +++ + + Sbjct: 79 MRRFFQHLYREKYREDDPSAQLASPKLPQRLPKDLSEAQVERLLQAPLIDQPLELRDKAM 138 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGKET 254 E L +GLR S+ + + ++ K V L + + L Sbjct: 139 LEVLYATGLRVSELVGLTMSDISLRQGMVRVIGKGNKERLVPLGEEAVYWLETYLEHGRP 198 Query: 255 FFIN----------NDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAG 301 + +N Q+M F K A AG++ S H +R AT + G Sbjct: 199 WLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHAFATHLLNHG 258 Query: 302 ATAHELMATYGWKTVDQAETYTKGA 326 A + G + + YT A Sbjct: 259 ADLRVVQMLLGHSDLSTTQIYTHVA 283 >gi|157158542|ref|YP_001463323.1| phage integrase family site specific recombinase [Escherichia coli E24377A] gi|157080572|gb|ABV20280.1| site-specific recombinase, phage integrase family [Escherichia coli E24377A] Length = 342 Score = 135 bits (340), Expect = 1e-29, Method: Composition-based stats. Identities = 62/333 (18%), Positives = 114/333 (34%), Gaps = 36/333 (10%) Query: 6 RLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHE---STFIPAYMSALTGSTPKREYIN 62 +LPP V K K YYF+ I L ++ + Y L + Sbjct: 12 KLPPRVYKN-----KYSYYFKPTPRECITLGKINDLSIAQVWVKYEEILNDAIDV----- 61 Query: 63 SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG 122 T L +++ S ++ L ++ + + +++ G + H+R Sbjct: 62 ------MTFSKLWNKFLNSTYYLELGQRTQKDYLQHQKKLLAAFGKMKADNVKPAHVRLY 115 Query: 123 VESRKHT-PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 ++ R + A SM +F+W + YV NPC V + K +T E+ Sbjct: 116 MDKRGLKSKTQANHEKASMSRVFRWGYERGYVKGNPCQGVSKFSLKPRDYY-FTDEE--- 171 Query: 182 FKSFWSEGSQP-RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240 + + + E S + A E R D + + + I+ KTG + + Sbjct: 172 YIAIYQEASPVLQCAMEIAYLCATRIGDIRKLTWDQVMSKGLFIQQGKTGKKQIKQYSER 231 Query: 241 FM-KLLAMTPIGKETF-FINNDKQKMNATQFSIWFKAKATKAG------VNKSAHGVRKF 292 L +G + F N + + T F+ ++ A + + H + K Sbjct: 232 LTFALEQAKSLGGQHFVVCNKYGGQYSYTGFNDIWRKARAAASEKLGYPITGTFHDL-KA 290 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKG 325 D ++ E G KT Q TY + Sbjct: 291 KGISDYD--GSSKEKQLFSGHKTEAQVLTYDRK 321 >gi|296126655|ref|YP_003633907.1| tyrosine recombinase XerD [Brachyspira murdochii DSM 12563] gi|296018471|gb|ADG71708.1| tyrosine recombinase XerD [Brachyspira murdochii DSM 12563] Length = 310 Score = 135 bits (340), Expect = 1e-29, Method: Composition-based stats. Identities = 56/265 (21%), Positives = 98/265 (36%), Gaps = 28/265 (10%) Query: 85 GSLAVNSRISFES----YFDQIIRKSGDFDYRKITTKHIRSGVESRKH---TPSSAIQFL 137 L+ N+ S++ Y D + R K T K I + RK + + Sbjct: 23 KGLSSNTLESYKRDIVIYLDFLTRN--KKTILKATRKDIEKFLSERKEQGSKSRTVARNK 80 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPR 193 S+ L+K+ V + Y++ NP ++E + K T ++ S +G + + Sbjct: 81 VSIVNLYKFLVMENYISKNPTDNLEVIRLKRVLPESLTTTEVDDLLSVHNEKTDKGLRDK 140 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDGFMKLLAMTP-- 249 FE + SGLR S+ C + + + I+ + I V + D + +L Sbjct: 141 AIFELMYSSGLRVSEICSLRIDDIFFEGKYLKIRGKGNKERI-VPINDRALDILQRYIQT 199 Query: 250 ------IGKET--FFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISAD 299 GK+T F+N K++ K K+ + K+ H +R AT Sbjct: 200 SRVIMVKGKKTSELFLNFRGDKISRVGIWKIVKETMKKSNITKNVYPHTLRHSFATHLIQ 259 Query: 300 AGATAHELMATYGWKTVDQAETYTK 324 GA + G + E YT Sbjct: 260 HGADLRAVQRMLGHSDITTTEIYTH 284 >gi|291514262|emb|CBK63472.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301] Length = 407 Score = 135 bits (340), Expect = 1e-29, Method: Composition-based stats. Identities = 58/359 (16%), Positives = 115/359 (32%), Gaps = 33/359 (9%) Query: 8 PPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYI----NS 63 P F K R + Y R + + + Sbjct: 58 PKFAVKHNRRKENLSLYL--IDKPRTPAERQQNKETLELATKIRAEREQEFKESMLGYRL 115 Query: 64 PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG----DFDYRKITTKHI 119 + + Y S + + +I+ + D + + IT + + Sbjct: 116 KKDRTVNFLDYFQAYINSYTKKDIRMV-QIALSRFKDFLKEQYPMNEFSIKPELITKEMM 174 Query: 120 RSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR--PWT 175 V + A + + ++A+ + + +PC SV K ++ +R + Sbjct: 175 EQFVAYLQSRSVGEGAKSIYQRFKKVIRYAIDHDVMLKDPCKSVT-CKVDSQMLRKDVLS 233 Query: 176 KEDMQQFKSFWSEGSQP--RLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTG- 230 E++Q+ + + P R AF F LY GLR D +++ N + + KT Sbjct: 234 PEEIQKLAACHYDNENPNVRRAFIFCLYCGLRFCDVKDLTYKNVDYGNRLLKFEQSKTKG 293 Query: 231 ----TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-- 284 + + + L DG + ++ P K + K +AG++K Sbjct: 294 HSASSGVVIPLNDGLLSIIGEAPADKNCLIFDLP----TYESCCKSVKRWVKRAGIDKHI 349 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343 S H R A + GA + + G + E YT+ D +L + + + Sbjct: 350 SWHCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYTRAVD--KLKEEAINSLPELK 406 >gi|302188726|ref|ZP_07265399.1| Phage integrase:Phage integrase, N-terminal SAM-like protein [Pseudomonas syringae pv. syringae 642] Length = 344 Score = 135 bits (340), Expect = 1e-29, Method: Composition-based stats. Identities = 59/332 (17%), Positives = 117/332 (35%), Gaps = 28/332 (8%) Query: 11 VTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSAL--TGSTPKREYINSPRKKP 68 + K + R G + YY+ G R +P + Y A+ K ++ ++ Sbjct: 14 LRKRKQRSGVVYYYYDLGGSPRKEIPLGSD------YGMAIVEYAKLEKSRTSSALVQQV 67 Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESR 126 T ++ +Y + + ++ Q+++ D I +H+ + R Sbjct: 68 LTFAYVAEKYMAEV-VPTKSPATQKDNARELKQLLKFFDDPPAPLEAIEPQHVVQYLRQR 126 Query: 127 KHT-PSSAIQFLTSMRVLFKWAVRQEYVA-INPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 T P A + + ++ +A Y A NPC V+ K + + F Sbjct: 127 GKTAPVRANREKALLSAIWNFARSAGYTALANPCAGVKGHKEVGRDHYI----EDEMFAL 182 Query: 185 FWSEGSQP-RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243 +S QP R A + +G R +D+ + + ++ ++ KT +E+ Sbjct: 183 VYSHAEQPLRDALDLFYLTGQRIADTLKMDERDIREGRLWVQQGKTNAKRRIEITGELKV 242 Query: 244 LLAMTPIGKE-------TFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKFS 293 ++ KE + ++ Q M ++ F A AGV K +R + Sbjct: 243 VIDRIMTRKEGHRIRTSRLIVMDNGQPMTSSMLRGRFDAAREAAGVEKGEFQMRDLRAKA 302 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKG 325 T A++ + G TV E Y + Sbjct: 303 GTDKAESSGDILQARDQLGHTTVVMTENYIRK 334 >gi|300824138|ref|ZP_07104257.1| site-specific recombinase, phage integrase family [Escherichia coli MS 119-7] gi|331667354|ref|ZP_08368219.1| putative integrase for prophage [Escherichia coli TA271] gi|300523314|gb|EFK44383.1| site-specific recombinase, phage integrase family [Escherichia coli MS 119-7] gi|331065710|gb|EGI37603.1| putative integrase for prophage [Escherichia coli TA271] Length = 300 Score = 135 bits (340), Expect = 1e-29, Method: Composition-based stats. Identities = 50/267 (18%), Positives = 90/267 (33%), Gaps = 17/267 (6%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK-H 128 T+ L + S + LA ++ + + ++ G + + +R ++ R Sbjct: 25 TVAKLWHMFMDSPAFTELAPRTQKDYRQHQRALLAVFGKVLADNVKIEQVRIFMDKRGLE 84 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 + + A L S+ ++ W + YV NPC V + K + T E + Sbjct: 85 SKTQANHELASLSRVYGWGYERGYVKNNPCKGVRKFTLKARTVYI-TDEQYAAIYA--EA 141 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT 248 Q R+A E R D Q + I+ KTGT E + + Sbjct: 142 IPQLRIAMEISYLCAARLGDVLELKWQDIMEKGIYIEQNKTGTKQIKEWSPRLRTAIQLA 201 Query: 249 ----PIGKETFFINNDKQKMNATQFSIWF----KAKATKAGVN--KSAHGVRKFSATISA 298 E K+ A + W+ +A KAGV + H + K Sbjct: 202 RNVSSGTCEYVINTTKGGKVIAKTLNNWWNQAKRAAEQKAGVPFGCNFHDI-KAKGISDY 260 Query: 299 DAGATAHELMATYGWKTVDQAETYTKG 325 + ++ + G KT +Q Y + Sbjct: 261 E--GSSRDKQIFSGHKTENQVLIYDRK 285 >gi|50119715|ref|YP_048882.1| site-specific tyrosine recombinase XerD [Pectobacterium atrosepticum SCRI1043] gi|49610241|emb|CAG73684.1| integrase/recombinase [Pectobacterium atrosepticum SCRI1043] Length = 299 Score = 135 bits (340), Expect = 1e-29, Method: Composition-based stats. Identities = 45/278 (16%), Positives = 94/278 (33%), Gaps = 26/278 (9%) Query: 74 LISEYRKSAHW--GSLAVNSRISFESYFDQIIRKSGDFD-----YRKITTKHIRSGVESR 126 LI ++ A W +LA N+ S+ + D + + + + Sbjct: 8 LIEQFL-DALWLERNLAENTLASYRLDLRSLAEWLAHHDNDLLHAQALDLQAFLADRIDG 66 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF- 185 + +S+ + L++MR F++ R++ + +P + PK + ++ + Sbjct: 67 GYKATSSARLLSAMRRFFQYLYREKQRSDDPSAVLSSPKLPQRLPKDLSEAQVSALLDAP 126 Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGF 241 + + E L +GLR S+ + + ++ K V L + Sbjct: 127 SIEQPLELRDKAMLEVLYATGLRVSELVGLTMSDVSLRQGVVRVLGKGNKERLVPLGEEA 186 Query: 242 MKLLAMTPIGKETFFIN----------NDKQKMNATQFSIWFKAKATKAGVN---KSAHG 288 + + + +N N ++M F K A A ++ S H Sbjct: 187 VYWIEYYLEHGRPWLLNGQTLDVLFPSNRARQMTRQTFWHRIKHYAVLASIDSAKLSPHV 246 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 +R AT + GA + G + + YT A Sbjct: 247 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA 284 >gi|315230922|ref|YP_004071358.1| phage integrase [Thermococcus barophilus MP] gi|315183950|gb|ADT84135.1| phage integrase [Thermococcus barophilus MP] Length = 276 Score = 135 bits (339), Expect = 1e-29, Method: Composition-based stats. Identities = 48/282 (17%), Positives = 106/282 (37%), Gaps = 20/282 (7%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134 I E+ + N+ + Y + + + D + R + ++ ++ S Sbjct: 3 IEEFEMYLELEGKSQNTVRMYSYYVKKFLEEGNDLNARS--ALRFLAVLKRSGYSNKSLN 60 Query: 135 QFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-GSQP 192 + +++ F++ + +E ++ PK + TKE++++ S + Sbjct: 61 LVVQALKAYFRFEGLEEE------AKKIKSPKVPRSLPKSLTKEEVKKLLSVIPPTRKRD 114 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMK----LLA 246 RL L SGLR S+ C + + ++ ++ K G V +P +K L Sbjct: 115 RLIVLLLYGSGLRVSELCNLKINDVDFKRSLIIVRGGKGGKDRIVPVPGALLKEIEDYLK 174 Query: 247 MTPIGKETFFI---NNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGAT 303 M E + + K +++ KAG+ + H +R AT + G Sbjct: 175 MRNDDSEYLLVEERRSRKDRLSPKTVWYILNKYGKKAGIKVTPHMLRHSFATHMLENGID 234 Query: 304 AHELMATYGWKTVDQAETYTK-GADRIRLGIKNSRRISSVVD 344 + G + + YTK + +R + ++ I S+++ Sbjct: 235 IRVIQEILGHSNLSTTQIYTKVTVEHLRRAQEKAKLIESLIE 276 >gi|189465362|ref|ZP_03014147.1| hypothetical protein BACINT_01711 [Bacteroides intestinalis DSM 17393] gi|189437636|gb|EDV06621.1| hypothetical protein BACINT_01711 [Bacteroides intestinalis DSM 17393] Length = 407 Score = 135 bits (339), Expect = 1e-29, Method: Composition-based stats. Identities = 60/350 (17%), Positives = 115/350 (32%), Gaps = 27/350 (7%) Query: 8 PPFVTKERTRHGKIIYY-FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKR-EYINSPR 65 P F K R + Y K R + + + Sbjct: 58 PKFAVKHNRRKENLSLYLIDKPRTPAERQRNKETLELATKIRAEREQEFKESMLGYRLKK 117 Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG----DFDYRKITTKHIRS 121 + Y S + + +I+ + D + + IT + + Sbjct: 118 DRTVNFLDYFQAYINSYTKKDIRMV-QIALSRFKDFLKEQYPMNEFSIKPELITKEMMEQ 176 Query: 122 GVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR--PWTKE 177 V + A + + ++A+ + + +PC SV K ++ +R + E Sbjct: 177 FVAYLQSRSVGEGAKSIYQRFKKVIRYAIDHDVMLKDPCKSVT-CKVDSQMLRKDVLSPE 235 Query: 178 DMQQFKSFWSEGSQP--RLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTG--- 230 ++Q+ + + P R AF F LY GLR D +++ N + + KT Sbjct: 236 EIQKLAACHYDNENPNVRRAFIFCLYCGLRFCDVKDLTYKNVDYANRLLKFEQSKTKGHS 295 Query: 231 --TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SA 286 + + + L DG + ++ P K + K +AG++K S Sbjct: 296 ASSGVVIPLNDGLLSIIGEAPADKNCLIFDLP----TYESCCKSVKRWVKRAGIDKHISW 351 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336 H R A + GA + + G + E YT+ D+++ NS Sbjct: 352 HCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYTRAVDKLKEEAINS 401 >gi|284008137|emb|CBA74367.1| phage integrase [Arsenophonus nasoniae] Length = 338 Score = 135 bits (339), Expect = 1e-29, Method: Composition-based stats. Identities = 62/338 (18%), Positives = 110/338 (32%), Gaps = 43/338 (12%) Query: 7 LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKR----EYIN 62 +PP V + G+ Y F+ +GR IRL AL E Sbjct: 13 MPPRVFR-----GRSAYEFKHPNGRTIRLC-------------ALNADKSVVWSHYEQYV 54 Query: 63 SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG 122 + K + LI+++ SA + L+ +++ ++ Y ++I G + I +HIR Sbjct: 55 NDEKHIFNYESLINQFLCSADFIELSKDTQNDYQKYSKKVIPVFGKMNPDNIKPEHIRKY 114 Query: 123 VESRKHT-PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 ++ R + A + + M +F+W + V NPC V++ K T + Sbjct: 115 MDKRGLKSRTQANREKSFMSRVFRWGYERGLVKNNPCKGVKQYKEIARDRYV-TDTEYHA 173 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241 S Q +A E R D L IK KTG + Sbjct: 174 LYSISPLIVQ--IAMELAYLCCARQGDILALRKDQLMEAGIYIKQGKTGKSQIKGWSERL 231 Query: 242 MKLLAMTP-------IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-------SAH 287 K + + + + + F+ + +A + H Sbjct: 232 TKTIKLAKQLPLKEGVNSLYVLHQANGKLYTRDGFNSRWLKAKEEAAKKYPELDFNFTFH 291 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 ++ + T E A G K + Q Y + Sbjct: 292 DLKAKGISDLD---GTLQEKQAISGHKNIGQTARYDRK 326 >gi|33600415|ref|NP_887975.1| site-specific tyrosine recombinase XerD [Bordetella bronchiseptica RB50] gi|33568014|emb|CAE31927.1| integrase/recombinase [Bordetella bronchiseptica RB50] Length = 310 Score = 135 bits (339), Expect = 1e-29, Method: Composition-based stats. Identities = 49/306 (16%), Positives = 97/306 (31%), Gaps = 35/306 (11%) Query: 62 NSPRKKPTTLKWLISE-YRKSAHWGSLAVNSRISFESYFDQIIRKSGD----------FD 110 ++P L I + + LA N+ ++ + + Sbjct: 4 SAPLASQADLDAFIDAVWLEDG----LAANTLAAYRRDLSAFAQWLENPACHPGLATGAS 59 Query: 111 YRKITTKHIRSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168 R+ I + +R + ++A + L ++R + WA+R+ +PCL++ K+ Sbjct: 60 LREAGKGDIEAWFAARHAESRATTANRRLAALRRFYAWALRERLTPSDPCLTLVTAKQPP 119 Query: 169 EGIRPWTKEDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224 + ++ + G + R E L +GLR S+ + N + Sbjct: 120 RLPKTLSEAQVDALLQAPDLDTARGLRDRAMLETLYATGLRVSELVSVKALDVSLNEGVV 179 Query: 225 KT--QKTGTIITVELPDGFMKLLAM----------TPIGKETFFINNDKQKMNATQFSIW 272 + K G V L + + F+ + M+ F Sbjct: 180 RVVMGKGGKDRLVPLGAEAAHWIERYAGSARPELLGARVADALFVTARAEPMSRQAFWQL 239 Query: 273 FKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 K A A + S H +R AT + GA + G + + YT A Sbjct: 240 VKKYALAADIRAPLSPHVLRHAFATHLLNHGADLRVVQMLLGHADISTTQIYTHVARERL 299 Query: 331 LGIKNS 336 + + Sbjct: 300 KALHAA 305 >gi|319944411|ref|ZP_08018685.1| tyrosine recombinase XerD [Lautropia mirabilis ATCC 51599] gi|319742372|gb|EFV94785.1| tyrosine recombinase XerD [Lautropia mirabilis ATCC 51599] Length = 342 Score = 135 bits (339), Expect = 1e-29, Method: Composition-based stats. Identities = 51/322 (15%), Positives = 101/322 (31%), Gaps = 35/322 (10%) Query: 44 IPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAH---------WGS--LAVNSR 92 + + G+ PK+ + + + R++ W L+ N+ Sbjct: 11 MEGATAGRQGARPKKADAPAASGGEAQIDAVAQRIRQADADIQSFSDALWLEDGLSKNTL 70 Query: 93 ISFESYFDQIIR-KSGDFDYRKITTKHIRSGVESRKH-----TPSSAIQFLTSMRVLFKW 146 ++ Q+ R + + + PSSA + LT ++ ++ Sbjct: 71 QAYRRDLVQLARWLAPSTRGVALAEASEADLLAYLADAHGHGKPSSANRRLTVIKRFYRH 130 Query: 147 AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRLAFEFLLYS 202 +R+ +P L + ++ ++ ++ + G + R E L + Sbjct: 131 LLREGRRQDDPTLRIRAMRQPARFPATLSEAQVEALLAAPDVETALGLRDRAMLEVLYAT 190 Query: 203 GLRCSDSCRAGVQHLQN-NIFSIKTQKTGTIITVELPDGFMKLLAM----------TPIG 251 GLR S+ + + + K V L + L Sbjct: 191 GLRVSELVGLKLSEVSMVDSLVRIVGKGSKERLVPLGEEARAWLVRYLQEARPRLLGARQ 250 Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMA 309 E F+ M F + + A +AG+ S H +R AT + GA + Sbjct: 251 AEAVFVTQRATGMTRQMFWVLIRRHALRAGIEAQLSPHTLRHAFATHLLNHGADLRVVQV 310 Query: 310 TYGWKTVDQAETYTKGADRIRL 331 G + + YT A R RL Sbjct: 311 LLGHADISTTQIYTHVA-RARL 331 >gi|153949027|ref|YP_001401219.1| phage integrase family site specific recombinase [Yersinia pseudotuberculosis IP 31758] gi|152960522|gb|ABS47983.1| site-specific recombinase, phage integrase family [Yersinia pseudotuberculosis IP 31758] Length = 338 Score = 135 bits (339), Expect = 1e-29, Method: Composition-based stats. Identities = 63/336 (18%), Positives = 106/336 (31%), Gaps = 39/336 (11%) Query: 7 LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHES--TFIPAYMSALTGSTPKREYINSP 64 LPP V + GK Y F G I L Y E +N Sbjct: 13 LPPRVYR-----GKSKYEFHPARGGSISLCPLDAPISQVWSDY-----------EKVNDR 56 Query: 65 RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124 + TL L ++ S + LA+ ++ + Y +++ G+ I +HIR ++ Sbjct: 57 LPEKVTLNKLTEQFLHSMDFCELAIETQKDYRKYSLKLLPVFGEMSPDNIRPEHIRKYMD 116 Query: 125 SRKHT-PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 R T + A + T + +++W + V NPC V++ K R T E+ Sbjct: 117 KRGITSRTQANREKTFLSRVYRWGYERGMVKGNPCRGVKQFTEKAR-DRYITDEEYDAVY 175 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243 + R+A E R +D L+ IK KT + Sbjct: 176 QVAPD--VVRVAMEIAYLCLARQADVLALRRDQLREPGIYIKQGKTAARQIKAWSERLRD 233 Query: 244 LLAMT-------PIGKETFFINNDKQKMNATQFSIWFKAKATKAG-------VNKSAHGV 289 + + I + F+ ++ A N + H + Sbjct: 234 AITLAESLPLKSGISSVYIIHQRTGLRYTRDGFNSKWRKAREVAKKTYPELDFNFTFHDL 293 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 K + T E A G K + Q Y + Sbjct: 294 -KAKGVSDLE--GTLSEKQAISGHKNMGQTARYDRK 326 >gi|18978240|ref|NP_579597.1| integrase-recombinase protein [Pyrococcus furiosus DSM 3638] gi|73920477|sp|Q8TZV9|XERC_PYRFU RecName: Full=Probable tyrosine recombinase xerC-like gi|18894057|gb|AAL81992.1| integrase-recombinase protein [Pyrococcus furiosus DSM 3638] Length = 286 Score = 135 bits (339), Expect = 1e-29, Method: Composition-based stats. Identities = 37/284 (13%), Positives = 105/284 (36%), Gaps = 18/284 (6%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133 ++ E+ + N+ + + + + + + + + ++ ++ S Sbjct: 10 VLEEFATYLELEGKSKNTIRMYTYFLSKFLEEG--YSPTARDALRFLAKLRAKGYSIRSI 67 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS-QP 192 + +++ FK+ + + PK + T+E++++ + + Sbjct: 68 NLVVQALKAYFKF---EGLNEE--AERLRNPKIPKTLPKSLTEEEVKKLIEVIPKDKIRD 122 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDGF----MKLLA 246 RL L +GLR S+ C ++ + + +++ K G T+ +P L Sbjct: 123 RLIVLLLYGTGLRVSELCNLKIEDINFEKGFLTVRGGKGGKDRTIPIPQPLLTEIKNYLR 182 Query: 247 MTPIGKETFFINNDKQ---KMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGAT 303 F+ + ++ K++ K KAG+ + H +R AT + G Sbjct: 183 RRTDDSPYLFVESRRKNKEKLSPKTVWRILKEYGRKAGIKVTPHQLRHSFATHMLERGID 242 Query: 304 AHELMATYGWKTVDQAETYTK-GADRIRLGIKNSRRISSVVDSD 346 + G ++ + YT+ A ++ ++ + + +++ + Sbjct: 243 IRIIQELLGHASLSTTQIYTRVTAKHLKEAVERANLLENLIGGE 286 >gi|319761793|ref|YP_004125730.1| tyrosine recombinase xerd [Alicycliphilus denitrificans BC] gi|317116354|gb|ADU98842.1| tyrosine recombinase XerD [Alicycliphilus denitrificans BC] Length = 299 Score = 135 bits (339), Expect = 1e-29, Method: Composition-based stats. Identities = 51/269 (18%), Positives = 91/269 (33%), Gaps = 24/269 (8%) Query: 86 SLAVNSRISFESYFD----QIIRKSGDFDYRKITTKHIRSGVESR--KHTPSSAIQFLTS 139 L+ N+ ++ + + H+ +R + +SA + LT Sbjct: 21 GLSRNTLAAYRRDLSLYAGWLAAQQPPLALDATAEHHLSGYFAARHAQTRATSANRRLTV 80 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRLA 195 +R F WA+R+ +A +P + + ++ + T+ ++ G + R Sbjct: 81 LRRYFHWALRERRIAQDPTVRLLAARQPLRVPKTLTQAQVEALLHAPDTATALGLRDRTM 140 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLAM------- 247 E + SGLR S+ L ++ T K G V + + L Sbjct: 141 LELMYASGLRVSELVTLKTFQLGLTEGVLRITGKGGKERLVPFGEEARRWLERYLAEGRG 200 Query: 248 ---TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGA 302 + F+ M+ F + K A AG+ S H +R AT + GA Sbjct: 201 AILAGRQTDDLFVTQRGSAMSRVMFWVIVKKCAQLAGITAPLSPHTLRHAFATHLLNHGA 260 Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRL 331 + G + YT A R RL Sbjct: 261 DLRVVQLLLGHADISTTTIYTHVA-RERL 288 >gi|229916183|ref|YP_002884829.1| tyrosine recombinase XerD [Exiguobacterium sp. AT1b] gi|229467612|gb|ACQ69384.1| tyrosine recombinase XerD [Exiguobacterium sp. AT1b] Length = 295 Score = 135 bits (339), Expect = 1e-29, Method: Composition-based stats. Identities = 46/269 (17%), Positives = 102/269 (37%), Gaps = 23/269 (8%) Query: 85 GSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSGVESRKHTPSSA---IQFLT 138 ++ N+R ++ S Q + + G ++ ++T HI +E ++ + ++ Sbjct: 17 KRMSANTRQAYASDLTQYASTLTQLGVEEWNEVTRSHIVKHIEELSQAGRASSSLRRAVS 76 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK----SFWSEGSQPRL 194 S+R+ +P L +E PK + + W++ ++++ + + R Sbjct: 77 SIRMFHHHLKMTGVTTTDPSLYLESPKAEKQLPDTWSQTEVERLLDSVPTSDPLSLRDRA 136 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-ELPDGFMKLLAM------ 247 E L +G+R S+ + LQ + ++ + G + + + Sbjct: 137 MLELLYGTGMRVSELLGLDLDDLQFELGYLQCEGKGERARIIPVSSVAQSFVERYIQQAR 196 Query: 248 ---TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302 E F+N +++ F K +A AG+ K + H +R AT + GA Sbjct: 197 NGLGGRETEALFLNGRGGRLSRQGFWKMIKRRAKLAGIEKEITPHVLRHSFATHLLENGA 256 Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRL 331 + G + + YT ++ RL Sbjct: 257 DLRAIQQMLGHADLATTQVYTH-VNKSRL 284 >gi|261227474|ref|ZP_05941755.1| putative integrase from prophage [Escherichia coli O157:H7 str. FRIK2000] gi|320188707|gb|EFW63367.1| Putative integrase [Escherichia coli O157:H7 str. EC1212] gi|323157131|gb|EFZ43254.1| phage integrase family protein [Escherichia coli EPECa14] gi|323159604|gb|EFZ45584.1| phage integrase family protein [Escherichia coli E128010] gi|326341722|gb|EGD65510.1| Putative integrase [Escherichia coli O157:H7 str. 1044] Length = 300 Score = 135 bits (339), Expect = 1e-29, Method: Composition-based stats. Identities = 49/267 (18%), Positives = 89/267 (33%), Gaps = 17/267 (6%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK-H 128 T+ L + S + LA ++ + + ++ G + T+ +R ++ R Sbjct: 25 TVAKLWHMFMDSPAFTELAPRTQKDYRQHQKALLMVFGKVLADNVKTEQVRIFMDKRGLE 84 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 + + A L S+ ++ W + YV NPC V + K + T E + Sbjct: 85 SKTQANHELASLSRVYGWGYERGYVKNNPCKGVRKFSLKARTVYI-TDEQYAAIYA--EA 141 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT 248 Q R+A E R D Q + + I+ KTGT E + + Sbjct: 142 IPQLRIAMEISYLCAARLGDVLELKWQDIMDKGIYIEQNKTGTKQIKEWSPRLRTAIQLA 201 Query: 249 ----PIGKETFFINNDKQKMNATQFSIWFKAKATKA----GVN--KSAHGVRKFSATISA 298 E K+ A + W+ A GV + H + K Sbjct: 202 RNVSSCTCEYVINTTKGGKVIAKTLNNWWNQAKRAAEQKVGVPFGCNFHDI-KAKGISDY 260 Query: 299 DAGATAHELMATYGWKTVDQAETYTKG 325 + ++ + G KT +Q Y + Sbjct: 261 E--GSSRDKQIFSGHKTENQVLIYDRK 285 >gi|302387936|ref|YP_003823758.1| integrase family protein [Clostridium saccharolyticum WM1] gi|302198564|gb|ADL06135.1| integrase family protein [Clostridium saccharolyticum WM1] Length = 295 Score = 135 bits (339), Expect = 1e-29, Method: Composition-based stats. Identities = 45/271 (16%), Positives = 91/271 (33%), Gaps = 25/271 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTK------HIRSGVESRKHTPSSAIQFLT 138 + N+ +S++ Q+ R++ +E ++ + L Sbjct: 16 KKTSKNTEVSYQRDLMQLASFLEQQGIREVDKVTKTSLTSYILHLEKEGKATTTISRCLA 75 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS----FWSEGSQPRL 194 SM+ F + ++ + +P ++ PK + + T +++ S + + R Sbjct: 76 SMKAFFHFECKEGRIQKDPAELLKAPKVEKKAPTILTVDEVNSLLSQPGGETPKELRDRA 135 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET 254 E L +G+R S+ + +I I + V L+ Sbjct: 136 MLELLYATGIRVSELIHLKKTDVNLSIGYITCRDEHKERMVPFGKVAKLALSAYMERGRV 195 Query: 255 FFI----------NNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302 +F+ N + + M+ F K KAG+ + H +R A GA Sbjct: 196 YFLRDQESPWLFTNCNGKSMSRQGFWKIIKFYGDKAGIKADITPHTLRHSFAAHLLRNGA 255 Query: 303 TAHELMATYGWKTVDQAET---YTKGADRIR 330 H + A G + + YT+G D R Sbjct: 256 DIHAVQAMLGHSDMATTQMYMNYTQGEDLRR 286 >gi|330447418|ref|ZP_08311067.1| tyrosine recombinase XerD [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328491609|dbj|GAA05564.1| tyrosine recombinase XerD [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 298 Score = 135 bits (339), Expect = 1e-29, Method: Composition-based stats. Identities = 37/265 (13%), Positives = 92/265 (34%), Gaps = 23/265 (8%) Query: 85 GSLAVNSRISFESYFDQII-----RKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139 L+ N+ S+ + +++ + + + + + + +S + +++ Sbjct: 19 RGLSENTLASYRNDLMKLLNWLKQESRNVINVSVDDLQRYQQWLFDKDYKQTSRARMVSA 78 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195 +R LF++ R++ +P + PK + ++ + + + Sbjct: 79 IRRLFQYLHREKMRDDDPSAMLVTPKLPKRLPKDLSEAQVDALLDAPDVNDPIELRDKAM 138 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLAMTP----- 249 E L +GLR ++ ++++ ++ T K V + + + + Sbjct: 139 LELLYATGLRVTELVTLTMENISLRQGVVRITGKGDKERLVPMGENAIDWIEQFIETGRP 198 Query: 250 -----IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKFSATISADAG 301 + F + ++M F K A AG++ S H +R AT + G Sbjct: 199 QLLGEKSSDVLFPSRRARQMTRQTFWHRIKHYAVLAGIDAETLSPHVMRHAFATHLLNYG 258 Query: 302 ATAHELMATYGWKTVDQAETYTKGA 326 A + G + + YT A Sbjct: 259 ADLRVVQMLLGHSDLSTTQIYTHVA 283 >gi|327398928|ref|YP_004339797.1| Tyrosine recombinase xerC [Hippea maritima DSM 10411] gi|327181557|gb|AEA33738.1| Tyrosine recombinase xerC [Hippea maritima DSM 10411] Length = 279 Score = 135 bits (339), Expect = 1e-29, Method: Composition-based stats. Identities = 43/271 (15%), Positives = 89/271 (32%), Gaps = 18/271 (6%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130 + LI + S + N+ S+ + + D + + + + P Sbjct: 3 IDRLIDRFLFSLKVRGFSDNTISSYANDLSLVSNFFKDKMLDDNGVGNFVLWLSQKNYKP 62 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 SS + L+S R K+ ++ I+ S++ K + R E +++ G Sbjct: 63 SSFNRKLSSFRSFLKFLTKEGLCNID-VSSIKNKKYSRKVPRYIPFETIKKVMEDKKTG- 120 Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVEL----PDGFMKL 244 L E + SGLR S+ V + ++ K V + Sbjct: 121 ---LFVELIYSSGLRVSELVNLRVSDIIFDAGFIRVR-GKGSKERLVPVGNGTLKRLKSY 176 Query: 245 LAMT------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISA 298 + + F+++ + + K K G++ H +R AT Sbjct: 177 IENARKNIKNSSNNDYLFLSSWGRPFSRQGLWKLIKRSFKKEGIDVHPHMLRHMFATHMI 236 Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRI 329 + GA + G +++ + YT D+ Sbjct: 237 ENGANIRAVQEMLGHRSITTTQIYTDITDKA 267 >gi|117928448|ref|YP_872999.1| tyrosine recombinase XerD [Acidothermus cellulolyticus 11B] gi|117648911|gb|ABK53013.1| tyrosine recombinase XerD [Acidothermus cellulolyticus 11B] Length = 311 Score = 135 bits (339), Expect = 1e-29, Method: Composition-based stats. Identities = 54/288 (18%), Positives = 103/288 (35%), Gaps = 33/288 (11%) Query: 69 TTLKWLISEYRKSAH-WGSLAVNSRISFESYFDQ---IIRKSGDFDYRKITTKHIRSGVE 124 T+ L+ Y LA N+ + + + + G D R +T +HI + + Sbjct: 4 RTVGDLVEAYLAHVAVEKGLAKNTVAGYRRDLRRYQEFLEQRGTTDPRAVTEEHITAFLA 63 Query: 125 SR----KHTP----SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176 + P SS+ + + ++R L ++A A +P V P + T Sbjct: 64 ALRTGDADHPPLAVSSSARAVVAVRGLHRFAAMDGITADDPSRDVRPPTPGRRLPKAITV 123 Query: 177 EDMQQFKS----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232 ++++ + + R E L +G R S++ + L + ++ + G+ Sbjct: 124 AEVERLLAAVDGHAPRELRDRALLEVLYGTGARISEAVGLAIDDLDLDAGLVRLRGKGSK 183 Query: 233 ITV-------------ELPDGFMKLLAMTPIG--KETFFINNDKQKMNATQFSIWFKAKA 277 V L G LLA G + F+N +++ + A Sbjct: 184 QRVVPLGGYARSALREYLTAGRPALLAAARSGSARGAVFLNARGGRLSRQSAWTVLRRAA 243 Query: 278 TKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 +AG+ S H +R AT + GA + G +V + YT Sbjct: 244 LRAGLATVISPHTLRHSFATHLLEGGADIRVVQELLGHASVTTTQIYT 291 >gi|325925497|ref|ZP_08186888.1| tyrosine recombinase XerD subunit [Xanthomonas perforans 91-118] gi|325544089|gb|EGD15481.1| tyrosine recombinase XerD subunit [Xanthomonas perforans 91-118] Length = 323 Score = 135 bits (339), Expect = 1e-29, Method: Composition-based stats. Identities = 48/273 (17%), Positives = 96/273 (35%), Gaps = 29/273 (10%) Query: 85 GSLAVNSRISFESYFDQIIR-----KSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139 +A + S+ + + R G + ++P S + L++ Sbjct: 38 QGVARQTLESYRRDLEGLARWRDGAHGGLLGIDRAALFDYLRWRTQANYSPRSTARLLST 97 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195 +R + +R + +P ++ P+ + T+ ++ + G + R Sbjct: 98 LRAFYGLCLRDGVRSDDPTTLIDPPQLPRSLPKALTESQIEALLAAPDVDTPAGLRDRAM 157 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-------------ELPDGFM 242 E + +GLR S+ + ++ G+ + L + Sbjct: 158 LELMYAAGLRVSELVNLPAVGVNLRQGVLRVTGKGSKDRLVPLGEESQHWLERYLREARP 217 Query: 243 KLLAMTPI----GKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSAT 295 L A TP+ G+ FI+ +Q ++ QF K A AG++ S HG+R AT Sbjct: 218 LLAANTPVAAVDGQVPLFIDAARQPLSRQQFWALVKRYAAVAGIDPDTVSPHGLRHSFAT 277 Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADR 328 + GA L G ++ + YT A + Sbjct: 278 HLLNHGADLRALQMLLGHSSLSTTQIYTLVARQ 310 >gi|302389650|ref|YP_003825471.1| tyrosine recombinase XerC [Thermosediminibacter oceani DSM 16646] gi|302200278|gb|ADL07848.1| tyrosine recombinase XerC [Thermosediminibacter oceani DSM 16646] Length = 298 Score = 135 bits (339), Expect = 1e-29, Method: Composition-based stats. Identities = 41/300 (13%), Positives = 94/300 (31%), Gaps = 35/300 (11%) Query: 75 ISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDF---------DYRKITTKHIRSGVE 124 I + + + + N+ ++ + Q I D + + + ++ Sbjct: 6 IDSFLTYISAAKNQSPNTLKAYANDLGQFIEYLEQNKISKTKTLNDITHLDIRGFLAYLK 65 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 + + + L+++R F++ + V+ +P V+ K + +++ S Sbjct: 66 ESGASKKTIARKLSAIRSFFRYLSTEGLVSEDPTKMVQGMKLPKKLPLFLYPAEIEALLS 125 Query: 185 FWS---EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL---- 237 G + R E L +G+R S+ ++ + I G+ V Sbjct: 126 APGQDVLGIRDRAIMELLYATGMRVSELVSLKLKDVNLGANFIIVFGKGSKERVVFFGSK 185 Query: 238 -PDGFMKLLAMTPI------GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHG 288 + + L + + F+N + ++ +N S H Sbjct: 186 AAESLEEYLRKSRPYLVKNLTCDYLFLNKNGTRLTDRSVRRIIDKYVKLLSLNAKISPHT 245 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348 +R AT + GA + G ++ + YT R+ V D P Sbjct: 246 LRHTFATHMLNNGADLKTVQELLGHVSLSTTQIYTHV---------TKERLKEVYDKAFP 296 >gi|237718794|ref|ZP_04549275.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] gi|229451926|gb|EEO57717.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] Length = 407 Score = 135 bits (339), Expect = 1e-29, Method: Composition-based stats. Identities = 59/352 (16%), Positives = 115/352 (32%), Gaps = 31/352 (8%) Query: 8 PPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYI----NS 63 P F K R + Y R + + + Sbjct: 58 PKFAVKHNRRKENLSLYL--IDKPRTPAERQQNKETLELATKIRAEREQEFKESMLGYRL 115 Query: 64 PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG----DFDYRKITTKHI 119 + + Y S + + +I+ + D + + IT + + Sbjct: 116 KKDRTVNFLDYFQAYINSYTKKDIRMV-QIALSRFKDFLKEQYPMNEFSIKPELITKEMM 174 Query: 120 RSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR--PWT 175 V + A + + ++A+ + + +PC SV K ++ +R + Sbjct: 175 EQFVAYLQSRSVGEGAKSIYQRFKKVIRYAIDHDVMLKDPCKSVT-CKVDSQMLRKDVLS 233 Query: 176 KEDMQQFKSFWSEGSQP--RLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTG- 230 E++Q+ + + P R AF F LY GLR D +++ N + + KT Sbjct: 234 PEEIQKLAACHYDNENPNVRRAFIFCLYCGLRFCDVKDLTYKNVDYANRLLKFEQSKTKG 293 Query: 231 ----TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-- 284 + + + L DG + ++ P K + K +AG++K Sbjct: 294 HSASSGVVIPLNDGLLSIIGEAPADKNCLIFDLP----TYESCCKSVKRWVKRAGIDKHI 349 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336 S H R A + GA + + G + E YT+ D+++ NS Sbjct: 350 SWHCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYTRAVDKLKEEAINS 401 >gi|21673437|ref|NP_661502.1| integrase/recombinase XerD [Chlorobium tepidum TLS] gi|34222899|sp|Q8KET0|XERD_CHLTE RecName: Full=Tyrosine recombinase xerD gi|21646539|gb|AAM71844.1| integrase/recombinase XerD [Chlorobium tepidum TLS] Length = 304 Score = 135 bits (339), Expect = 1e-29, Method: Composition-based stats. Identities = 40/265 (15%), Positives = 90/265 (33%), Gaps = 25/265 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITT-----KHIRSGVESRKHTPSSAIQFLTS 139 + + N+R S+ + + + + + + + SS + +++ Sbjct: 23 RNFSGNTRASYLNDLGRYLAWLHECGVKPEEAAPGDIRKFIQELHEIGLEASSIARNISA 82 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----QQFKSFWSEGS---QP 192 +R K+ + + +NP ++ +PK T E+M + + Sbjct: 83 IRSFHKFLLTERLATMNPAENIHQPKLARYLPSVLTIEEMATLLDAPLKRHPTSTFMLRD 142 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAM---- 247 + EFL +G+R S+ +L + ++ K V + + + Sbjct: 143 KAMLEFLYATGVRVSELLGLSRLNLHMDDGFVRVFGKGSKERLVPVGQTAISWMKRYLDE 202 Query: 248 ------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299 + +T F+N+ ++ + A AG+ K S H R AT + Sbjct: 203 LRPGMMSATSHDTIFLNSRGGPLSRMAAWNIVREHAVIAGIEKPISPHTFRHSFATHLLE 262 Query: 300 AGATAHELMATYGWKTVDQAETYTK 324 GA + G ++ + YT Sbjct: 263 GGADLRVVQEMLGHSSIIATQIYTH 287 >gi|260913748|ref|ZP_05920224.1| tyrosine recombinase XerD [Pasteurella dagmatis ATCC 43325] gi|260632287|gb|EEX50462.1| tyrosine recombinase XerD [Pasteurella dagmatis ATCC 43325] Length = 301 Score = 135 bits (339), Expect = 1e-29, Method: Composition-based stats. Identities = 45/286 (15%), Positives = 99/286 (34%), Gaps = 30/286 (10%) Query: 73 WLISEYRKSAHW--GSLAVNSRISFE----SYFDQIIRKSGDFDYR-----KITTKHIRS 121 LI + W L+ N+ S+ + + ++S + I + Sbjct: 5 ALIELFLNDV-WIERKLSQNTVQSYRLDLTALLQWLEKQSEEQPLTLITLDAIDLQTFLG 63 Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 ++ + +S + L+++R LF++ R++Y +P + PK + + T++ + Sbjct: 64 ERLTQGYKATSTARLLSAIRKLFQYLYREKYRTDDPSAVLSSPKLPSRLPKYLTEQQVTD 123 Query: 182 FKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE 236 + + + E L +GLR ++ V+++ N ++ K V Sbjct: 124 LLNAPDVDVPLELRDKAMMELLYATGLRVTELVSLTVENININQGIVRVIGKGNKERIVP 183 Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQ----------KMNATQFSIWFKAKATKAGVNK-- 284 + + + + T +N +M F K A + ++ Sbjct: 184 IGEEATYWIRQFVLYGRTTLLNGQSSDVLFPSKRAVQMTRQTFWHRIKHYALISEIDLNS 243 Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 S H +R AT + GA + G + + YT A Sbjct: 244 LSPHVLRHAFATHLINHGADLRVVQMLLGHSDLSTTQIYTHVAKER 289 >gi|301311630|ref|ZP_07217556.1| putative truncated integrase [Bacteroides sp. 20_3] gi|300830371|gb|EFK61015.1| putative truncated integrase [Bacteroides sp. 20_3] Length = 312 Score = 135 bits (339), Expect = 1e-29, Method: Composition-based stats. Identities = 45/224 (20%), Positives = 86/224 (38%), Gaps = 20/224 (8%) Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR--PWTKEDMQQFKSFWSEGS 190 A + + ++A+ + + +PC SV K ++ +R + E++Q+ + + Sbjct: 95 AKSIYQRFKKVIRYAIDHDVMLKDPCKSVT-CKVDSQMLRKDVLSPEEIQKLIACHYDNE 153 Query: 191 QP--RLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTG-----TIITVELPDGF 241 P R AF F LY GLR D +++ N + + KT + + + L DG Sbjct: 154 NPTIRRAFIFCLYCGLRFCDVKDLTYKNVDYANRLLKFEQSKTKGHSASSGVVIPLNDGL 213 Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299 + ++ P K + K +AG++K S H R A + Sbjct: 214 LSIIGEAPADKNCLIFDLP----TYESCCKSVKRWVKRAGIDKHISWHCARHSFAVNILN 269 Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343 GA + + G + E YT+ D +L + + + Sbjct: 270 NGANIKTVASLLGHSGLKHTEKYTRAVD--KLKEEAINSLPELK 311 >gi|218441747|ref|YP_002380076.1| integrase [Cyanothece sp. PCC 7424] gi|218174475|gb|ACK73208.1| integrase family protein [Cyanothece sp. PCC 7424] Length = 294 Score = 135 bits (339), Expect = 1e-29, Method: Composition-based stats. Identities = 46/248 (18%), Positives = 97/248 (39%), Gaps = 11/248 (4%) Query: 88 AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLT----SMRVL 143 + S+ ++ S+ Q + G +++ + ++ V S +++ L +++ L Sbjct: 35 SKTSQNTYASHIKQFLEYVG-KPLKELKLEDMQLWVSSLENSQRYKTATLKLKINTVKSL 93 Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGI-RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS 202 + + Y+ N +V+ P K E R ++ ++ ++ + R+ + + Sbjct: 94 LTFGQKVGYLQFNIGSAVKPPNPKNELSSRMLSETEVTTLIEKANQNQRDRIILKLMYVC 153 Query: 203 GLRCSDSCRAGVQHL---QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINN 259 G+R S+ + L N +I K G V +P+ + P + FI+ Sbjct: 154 GMRVSEVVGLNWRDLVPNNNGGLAIVLGKGGKTRVVLIPEKLWLDIQQLPKTDDAVFISR 213 Query: 260 DKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVD 317 K +++ K A +AG+N S H +R AT S + G H L + G + Sbjct: 214 KKNRISRKTVHYMIKQYAKQAGINGNVSPHWLRHSHATHSIERGCNLHLLQQSLGHSNLS 273 Query: 318 QAETYTKG 325 Y Sbjct: 274 ITSRYLHA 281 >gi|221194870|ref|ZP_03567927.1| tyrosine recombinase XerD [Atopobium rimae ATCC 49626] gi|221185774|gb|EEE18164.1| tyrosine recombinase XerD [Atopobium rimae ATCC 49626] Length = 313 Score = 135 bits (339), Expect = 1e-29, Method: Composition-based stats. Identities = 42/278 (15%), Positives = 101/278 (36%), Gaps = 32/278 (11%) Query: 77 EYRKSAHWGSLAVNSRISFESYFDQI-----IRKSGDFDYRKITTKHIRSGVESRKHTPS 131 Y ++ +L+ N+ ++ + + + S ++ +++ Sbjct: 19 AYLRTVR--NLSDNTTRAYSVDLASYISWCKREELDPLQATHRSLRAYLSYLDQARYSAR 76 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS---- 187 + + L+++R +KW +++Y+ ++P L + P+ + + ED+Q+ Sbjct: 77 TLNRHLSALRGFYKWLNKEKYLEVDPSLILTSPRTSRRLPQTMSDEDVQKLLLSCDTDTA 136 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVEL----PDGFM 242 G + R E + +G R S+ + + + ++ K V L D Sbjct: 137 VGLRDRAILECMYATGARISEISHLDREDVDMSQGVVRLFGKGSKERDVPLYKTARDWLE 196 Query: 243 KLLAMT--------------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSA 286 + P ++ F++ +M+A F+ KAG++ + Sbjct: 197 AYMYGARSQLIGKGRKSLRNPREEKALFVSIRGHRMSADVLRKMFETYVKKAGLDPMLTP 256 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R AT GA + G +++ + YT Sbjct: 257 HAMRHTFATELLSGGADLRVVQELLGHQSLSTTQIYTH 294 >gi|134093692|ref|YP_001098767.1| site-specific tyrosine recombinase [Herminiimonas arsenicoxydans] gi|133737595|emb|CAL60638.1| tyrosine recombinase XerD [Herminiimonas arsenicoxydans] Length = 309 Score = 135 bits (339), Expect = 1e-29, Method: Composition-based stats. Identities = 47/268 (17%), Positives = 87/268 (32%), Gaps = 23/268 (8%) Query: 86 SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS-----GVESRKHTPSSAIQFLTSM 140 LA NS ++ + + H +S+ + L + Sbjct: 32 GLAKNSLEAYRRDLRLFAVWLQAERGKTLLAAHADDVNAYFFARHEVTKATSSNRRLAVL 91 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAF 196 + ++ A+RQ ++ +PCL + K+ + ++ ++ + G + R Sbjct: 92 KRFYQLALRQNRISDDPCLKMRSAKQPLRIPKTLSEAQVEALLAAPDVTTPLGLRDRTML 151 Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLAMTPIG---- 251 E + SGLR ++ + N ++ T K G V + + Sbjct: 152 ELMYASGLRVTELVLLKSIEVGMNEGVLRITGKGGKTRLVPFGEEARVWIERYLKEARPL 211 Query: 252 ------KETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGAT 303 + F+ M F K A A +N S H +R AT + GA Sbjct: 212 ILDGQIDDALFVTARGAAMTRQMFWTLIKKHAAAAEINAPLSPHTLRHAFATHLLNHGAD 271 Query: 304 AHELMATYGWKTVDQAETYTKGADRIRL 331 + G + + YT A R RL Sbjct: 272 LRVVQMLLGHSDISTTQIYTHVA-RERL 298 >gi|162447539|ref|YP_001620671.1| site-specific tyrosine recombinase [Acholeplasma laidlawii PG-8A] gi|161985646|gb|ABX81295.1| site-specific tyrosine recombinase [Acholeplasma laidlawii PG-8A] Length = 301 Score = 135 bits (339), Expect = 1e-29, Method: Composition-based stats. Identities = 53/271 (19%), Positives = 102/271 (37%), Gaps = 24/271 (8%) Query: 81 SAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI---QFL 137 S + + +ES+ D+ + D I +KHI ++S K SA + L Sbjct: 19 SKNTIDAYMRDLKDYESFLDKYHKL---KDVDNIQSKHIEGYLKSIKKKGLSAKTISRKL 75 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----QQFKSFWSEGSQPR 193 TS++ K+ + ++ V + + RPK + + +++ + + G + Sbjct: 76 TSIKSFHKFLLMEKEVDEDVTHKIARPKIEKTLPTVLSVDEVISILEVIDKSTTLGLRNM 135 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMKLLA------ 246 E + SGLR S+ ++ + I T K V + D + + Sbjct: 136 ALLELIYGSGLRVSELLNIKLKDIHMQQSYVIVTGKGSKERMVPISDMAIIAIRNYLVKA 195 Query: 247 ---MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADA 300 + + FINN + ++ F K A++A ++ S H +R AT + Sbjct: 196 RDDLIKEKTDYLFINNQGKTLSRVGFFKVLKKLASEANLDPEKVSPHTLRHSFATHLLEN 255 Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRL 331 G L G + + + YT + RL Sbjct: 256 GMDLRSLQNLLGHEDISTTQIYTH-ISQSRL 285 >gi|299530798|ref|ZP_07044213.1| tyrosine recombinase XerD [Comamonas testosteroni S44] gi|298721314|gb|EFI62256.1| tyrosine recombinase XerD [Comamonas testosteroni S44] Length = 318 Score = 134 bits (338), Expect = 1e-29, Method: Composition-based stats. Identities = 53/275 (19%), Positives = 99/275 (36%), Gaps = 24/275 (8%) Query: 86 SLAVNSRISFESYF----DQIIRKSGDFDYRKITTKHIRSGVESR--KHTPSSAIQFLTS 139 L+ N+ ++ + R ++ +R +S+ + LT Sbjct: 40 GLSRNTLSAYRRDLTATARWLARLQPPKALDAALEGDLQGYFTARVEGTKATSSNRRLTV 99 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRLA 195 +R F WA+R++ +A +P + + K+ + T+E ++ G + R Sbjct: 100 LRRYFHWALREKRIAADPTVRMLAAKQPPRMPKTLTQEQVEALLDAPDVDSPLGLRDRAM 159 Query: 196 FEFLLYSGLRCSDSC--RAGVQHLQNNIFSIKTQKTGTIITVE-------LPDGFMKLLA 246 E + SGLR S+ R L++ + + + + L + A Sbjct: 160 LELMYASGLRVSELVGVRMHELDLRSGVLRVTGKGRKERLVPFGQEAQHWLERYLQQARA 219 Query: 247 MTPIGKET--FFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGA 302 G++T F+ M+ F + K A AG+N S H +R AT + GA Sbjct: 220 AILGGQQTEEVFVTQRGAGMSRVMFWVIVKKCAQIAGINSPLSPHTLRHAFATHLLNHGA 279 Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 + G + YT A R RL ++ Sbjct: 280 DLRVVQMLLGHADISTTTIYTHVA-RERLKALHAE 313 >gi|254172394|ref|ZP_04879069.1| integrase/recombinase [Thermococcus sp. AM4] gi|214033323|gb|EEB74150.1| integrase/recombinase [Thermococcus sp. AM4] Length = 283 Score = 134 bits (338), Expect = 1e-29, Method: Composition-based stats. Identities = 42/288 (14%), Positives = 100/288 (34%), Gaps = 20/288 (6%) Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH 128 +I E+ + N+ + Y + + + G D+R + + + Sbjct: 3 GEHSTVIEEFATYLDLEGKSPNTIRMYTYYVRRYLEQGGGLDFRS--ALRFLARLRREGY 60 Query: 129 TPSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + S + ++R F++ + +E ++ PK + T E++++ S Sbjct: 61 SNRSLNLVVQALRAYFRFEGLDEE------AEKLKPPKVPKSLPKALTPEEVRKILSVIP 114 Query: 188 E-GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKL 244 + RL L +GLR S+ C + I +++ K V + + Sbjct: 115 LTRRRDRLIVLLLYGAGLRVSELCNLKRGDVDLDRGIITVRGGKGAKDRVVPISPALAEE 174 Query: 245 LAM----TPIGKETFFINNDKQ---KMNATQFSIWFKAKATKAGVNKSAHGVRKFSATIS 297 + E + + +++ KAGV + H +R AT Sbjct: 175 IRAYLRERKDNSEYLLVEVRRGTKDRLSPKTVWYLLNRYGKKAGVKVTPHMLRHSFATHM 234 Query: 298 ADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNSRRISSVVD 344 + G + G + + YTK + ++ + ++ + S+++ Sbjct: 235 LERGVDIRAIQELLGHSNLSTTQIYTKVTVEHLKKAQEKAKLLESLME 282 >gi|330826574|ref|YP_004389877.1| Tyrosine recombinase xerC [Alicycliphilus denitrificans K601] gi|329311946|gb|AEB86361.1| Tyrosine recombinase xerC [Alicycliphilus denitrificans K601] Length = 299 Score = 134 bits (338), Expect = 1e-29, Method: Composition-based stats. Identities = 51/269 (18%), Positives = 91/269 (33%), Gaps = 24/269 (8%) Query: 86 SLAVNSRISFESYFD----QIIRKSGDFDYRKITTKHIRSGVESR--KHTPSSAIQFLTS 139 L+ N+ ++ + + H+ +R + +SA + LT Sbjct: 21 GLSRNTLAAYRRDLSLYAGWLAAQQPPLALDATAEHHLSGYFAARHAQTRATSANRRLTV 80 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRLA 195 +R F WA+R+ +A +P + + ++ + T+ ++ G + R Sbjct: 81 LRRYFHWALRERRIAQDPTVRLLAARQPLRVPKTLTQAQVEALLHAPDTATALGLRDRTM 140 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLAM------- 247 E + SGLR S+ L ++ T K G V + + L Sbjct: 141 LELMYASGLRVSELVTLKTFQLGLAEGVLRITGKGGKERLVPFGEEARRWLERYLAEGRG 200 Query: 248 ---TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGA 302 + F+ M+ F + K A AG+ S H +R AT + GA Sbjct: 201 AILAGRQTDDLFVTQRGSAMSRVMFWVIVKKCAQLAGITAPLSPHTLRHAFATHLLNHGA 260 Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRL 331 + G + YT A R RL Sbjct: 261 DLRVVQLLLGHADISTTTIYTHVA-RERL 288 >gi|77165718|ref|YP_344243.1| tyrosine recombinase XerD [Nitrosococcus oceani ATCC 19707] gi|254433312|ref|ZP_05046820.1| tyrosine recombinase XerD [Nitrosococcus oceani AFC27] gi|76884032|gb|ABA58713.1| Tyrosine recombinase XerD [Nitrosococcus oceani ATCC 19707] gi|207089645|gb|EDZ66916.1| tyrosine recombinase XerD [Nitrosococcus oceani AFC27] Length = 305 Score = 134 bits (338), Expect = 1e-29, Method: Composition-based stats. Identities = 48/274 (17%), Positives = 92/274 (33%), Gaps = 23/274 (8%) Query: 86 SLAVNSRISFESYFDQIIRKSGDFDYRKITTKH-----IRSGVESRKHTPSSAIQFLTSM 140 LA N+ ++ ++ R I + + S + ++S+ Sbjct: 28 GLAENTLAAYRRDLERFSRWLHSQGRTLIGAQREDLLAYLAHRLEGGDKSRSVARSVSSL 87 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAF 196 R +++ + ++ +P VE P+ ++E+++ + S G + R Sbjct: 88 RRFYRYLMGEKIRDNDPSDRVESPRLGRLLPESLSEEEVEALLAAPKTEDSLGLRDRTML 147 Query: 197 EFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET- 254 E L +GLR S+ + L + K V L + + L Sbjct: 148 ETLYATGLRVSELVNLTLPQLNPRQGVVYLSGKGNKERLVPLGEVALSWLDRYCREARLG 207 Query: 255 ---------FFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGAT 303 F+ M+ F K A ++G+ K S H +R AT + GA Sbjct: 208 LVRSQVNEILFLTRRGGAMSRQAFWYLIKRYARQSGIQKALSPHTLRHAFATHLLNHGAD 267 Query: 304 AHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 + G + + YT A R RL + + Sbjct: 268 LRVVQILLGHADLSTTQIYTHVA-RARLQQLHQQ 300 >gi|294664569|ref|ZP_06729911.1| tyrosine recombinase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292605653|gb|EFF48962.1| tyrosine recombinase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 323 Score = 134 bits (338), Expect = 1e-29, Method: Composition-based stats. Identities = 45/273 (16%), Positives = 92/273 (33%), Gaps = 29/273 (10%) Query: 85 GSLAVNSRISFESYFDQIIR-----KSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139 +A + S+ + + R G + ++P S + L++ Sbjct: 38 QGVARQTLESYRRDLEGLARWRDGAGGGLLGIDRAALFDYLRWRTRANYSPRSTARLLST 97 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195 +R + +R + +P ++ P+ + T+ ++ + G + R Sbjct: 98 LRAFYGLCLRDGVRSDDPTALIDPPQLPRSLPKALTESQIEALLAAPDLDTPAGLRDRAM 157 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-ITVEL---------------PD 239 E + +GLR S+ + ++ G+ V L Sbjct: 158 LELMYAAGLRVSELVNLPAVGVNLRQGVLRVTGKGSKDRLVPLGEESQHWLERYLREARP 217 Query: 240 GFMKLLAMTPIGKET-FFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSAT 295 +T + + FI+ +Q ++ QF K A AG++ S HG+R AT Sbjct: 218 LLAANKPVTAVDGQVPLFIDVSRQPLSRQQFWALVKRYAAAAGIDPVTVSPHGLRHSFAT 277 Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADR 328 + GA L G ++ + YT A + Sbjct: 278 HLLNHGADLRALQMLLGHSSLSTTQIYTLVARQ 310 >gi|161506408|ref|YP_001573520.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160867755|gb|ABX24378.1| hypothetical protein SARI_04606 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 298 Score = 134 bits (338), Expect = 1e-29, Method: Composition-based stats. Identities = 44/265 (16%), Positives = 90/265 (33%), Gaps = 23/265 (8%) Query: 85 GSLAVNSRISFESYFD---QIIRKSGD--FDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139 +LA N+ ++ +R G + + + + + +S+ + L++ Sbjct: 19 RNLAENTLSAYRRDLSMVVAWLRHRGKTLATAQADDLQTLLAERVEGGYKATSSARLLSA 78 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195 MR F+ R++Y +P + PK + ++ +++ + + Sbjct: 79 MRRFFQHLYREKYREDDPSAQLASPKLPQRLPKDLSEAQVERLLQAPLIEQPLELRDKAM 138 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGKET 254 E L +GLR S+ + + ++ K V L + + L Sbjct: 139 LEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVYWLETYLEHGRP 198 Query: 255 FFIN----------NDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAG 301 + +N Q+M F K A AG++ S H +R AT + G Sbjct: 199 WLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHAFATHLLNHG 258 Query: 302 ATAHELMATYGWKTVDQAETYTKGA 326 A + G + + YT A Sbjct: 259 ADLRVVQMLLGHSDLSTTQIYTHVA 283 >gi|255011581|ref|ZP_05283707.1| putative integrase [Bacteroides fragilis 3_1_12] gi|313149409|ref|ZP_07811602.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] gi|313138176|gb|EFR55536.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] Length = 407 Score = 134 bits (338), Expect = 2e-29, Method: Composition-based stats. Identities = 61/352 (17%), Positives = 117/352 (33%), Gaps = 31/352 (8%) Query: 8 PPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYI----NS 63 P F K R + Y R + M + + Sbjct: 58 PKFAVKHNRRKENLSLYL--IDKPRTPAERQQNKETLELAMRIRAEREQEFKESMLGYRL 115 Query: 64 PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG----DFDYRKITTKHI 119 + + Y S + + +I+F + D + + IT + + Sbjct: 116 KKDRAVNFLDYFQAYINSYTKKDIRMV-QIAFSRFKDFLKEQYPMNEFSIKPELITKEMM 174 Query: 120 RSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR--PWT 175 V + A + + ++A+ + + +PC SV K ++ +R + Sbjct: 175 EQFVAYLQSRSVGEGAKSIYQRFKKVIRYAIDHDVMLKDPCKSVT-CKVDSQMLRKDVLS 233 Query: 176 KEDMQQFKSFWSEGSQP--RLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTG- 230 E++Q+ + + P R AF F LY GLR D +++ N + + KT Sbjct: 234 PEEIQKLMACHYDNENPTIRRAFIFCLYCGLRFCDVKDLTYKNVDYANRLLKFEQSKTKG 293 Query: 231 ----TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-- 284 + + + L DG + ++ P K + K +AG++K Sbjct: 294 HSASSGVVIPLNDGLLSIIGEAPADKNCLIFDLP----TYESCCKSVKRWVKRAGIDKHI 349 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336 S H R A + GA + + G + E YT+ D+++ NS Sbjct: 350 SWHCARHSFAVNILNNGANIKTVASLLGHNGLKHTEKYTRAVDKLKEEAINS 401 >gi|218885463|ref|YP_002434784.1| tyrosine recombinase XerD [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218756417|gb|ACL07316.1| tyrosine recombinase XerD [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 290 Score = 134 bits (338), Expect = 2e-29, Method: Composition-based stats. Identities = 53/228 (23%), Positives = 82/228 (35%), Gaps = 16/228 (7%) Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 + R T + + L+++R LF V Q +A +P +E PK T+++ Sbjct: 51 YIVDLRRRGLTSRTLSRHLSALRGLFAHGVAQGQLAADPLRYLENPKLPRTLPDVLTRDE 110 Query: 179 MQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTII 233 M + G + R E L SGLR S+ C ++ K Sbjct: 111 MAAVLARPDLSDRLGFRDRTMLELLYASGLRVSELCGLRPLDFDPMTGLVRVFGKGSKER 170 Query: 234 TVELPDGFMKLLAMTPIG--------KETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284 V + D KLL+ ++ F+N + + K +AG+ K Sbjct: 171 IVPVHDTAAKLLSAYIRDWRPAFRPVEDALFLNRSGKGLTRQAVWKVVKRHVAEAGIRKD 230 Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIR 330 S H R AT D GA + G + E YT ADR+R Sbjct: 231 ISPHTFRHSFATHLLDGGADLRTVQMLLGHADIAATEIYTHVQADRLR 278 >gi|260856279|ref|YP_003230170.1| integrase [Escherichia coli O26:H11 str. 11368] gi|260868958|ref|YP_003235360.1| putative integrase [Escherichia coli O111:H- str. 11128] gi|257754928|dbj|BAI26430.1| integrase [Escherichia coli O26:H11 str. 11368] gi|257765314|dbj|BAI36809.1| putative integrase [Escherichia coli O111:H- str. 11128] gi|323156505|gb|EFZ42659.1| integrase [Escherichia coli EPECa14] gi|323176845|gb|EFZ62435.1| integrase [Escherichia coli 1180] Length = 356 Score = 134 bits (338), Expect = 2e-29, Method: Composition-based stats. Identities = 61/341 (17%), Positives = 113/341 (33%), Gaps = 23/341 (6%) Query: 7 LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHE---STFIPAYMSALTGSTPKREYINS 63 LPP + R+ Y G+ L + I A + L+G+ + Sbjct: 12 LPPNLY---IRNNGYYCYRDPRTGKEFGLGRDRRIAITEAIQANIELLSGNRRESLIDRI 68 Query: 64 PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123 TL + Y + + + + S I RK D I+TK + + + Sbjct: 69 KGADAITLHAWLDRYETILSERGIRPKTLLDYASKIRAIRRKLPDKPLADISTKEVAAML 128 Query: 124 ESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 + + +SA +++ +F+ A+ + +VA NP + K + R E + Sbjct: 129 NTYVAEGKAASAKLIRSTLVDVFREAIAEGHVATNPVTATRTAKSEVRRSRLTANEYVAI 188 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241 + + RLA + + +G R D CR + +N I+ KTG + + L Sbjct: 189 YHAAEPLPIWLRLAMDLAVVTGQRVGDLCRMKWSDINDNHLHIEQGKTGAKLAIPLTLTI 248 Query: 242 MKL---------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-----NKSAH 287 L G ET + + ++ S +F +G+ + H Sbjct: 249 DALNISLADTLQKCREASGSETIIASTHHEPLSPKTVSKYFTKARNASGLSFDGDPPTFH 308 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 +R + G K+ A Y R Sbjct: 309 ELR-SLSARLYRNQIGDKFAQRLLGHKSDSMAARYRDSRGR 348 >gi|253576347|ref|ZP_04853677.1| tyrosine recombinase XerD [Paenibacillus sp. oral taxon 786 str. D14] gi|251844240|gb|EES72258.1| tyrosine recombinase XerD [Paenibacillus sp. oral taxon 786 str. D14] Length = 323 Score = 134 bits (338), Expect = 2e-29, Method: Composition-based stats. Identities = 43/264 (16%), Positives = 92/264 (34%), Gaps = 26/264 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDF---DYRKITTKHIRSGVESRKH---TPSSAIQFLT 138 L+ +R S+ Q I DYR++T I K P++ + Sbjct: 16 RGLSEATRESYARDLKQYISYLQSKQISDYRQVTRAGILLYFAYLKDLGKAPATIQRVSV 75 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRL 194 ++R F++ +++ + +P + +E PK + + + T E+ ++ G + + Sbjct: 76 TLRAFFRYLLQERRIEQDPFIMLEMPKVEKKPPQTLTVEETERLLEAPKPDTPLGLRDKA 135 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK-------------TGTIITVELPDGF 241 E L +G+R S+ + + ++ T + + L +G Sbjct: 136 MLELLYATGIRVSELISLNKDDVNLELHFLRCTGERGKERILPFGGVTAEWLDLYLREGR 195 Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISAD 299 L+ F N +++ F K +AG+ + + H +R A + Sbjct: 196 SHLILDE-RENPALFPNRRGGRISRQGFWKLMKKYGQEAGITSDITPHTLRHSFAVHLLE 254 Query: 300 AGATAHELMATYGWKTVDQAETYT 323 GA + G + Y Sbjct: 255 RGADVRSVQELLGHSDASTIQMYV 278 >gi|167561800|ref|ZP_02354716.1| site-specific tyrosine recombinase XerD [Burkholderia oklahomensis EO147] Length = 325 Score = 134 bits (338), Expect = 2e-29, Method: Composition-based stats. Identities = 53/270 (19%), Positives = 93/270 (34%), Gaps = 26/270 (9%) Query: 85 GSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIRSGVESRKH-TPSSAIQFLTSM 140 L+ N+ ++ Q + + + + +R +S+ + L+ Sbjct: 48 HGLSRNTLDAYRRDLQLFAQWLAAQHAENVDHANEAMLTGYIAARSDGKATSSNRRLSVF 107 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAF 196 R + WAVR+ A++P L + K+ ++ ++ + G + R Sbjct: 108 RRYYGWAVREHRAAVDPTLRIASAKQAPRFPSTLSEAQVEALLAAPDVDTPLGLRDRTML 167 Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-------------ITVELPDGFMK 243 E + SGLR S+ + N ++ G+ I L DG Sbjct: 168 ELMYASGLRVSELVTVKSVEVGLNEGVVRVTGKGSKERLVPFGEVAHGWIERYLRDGRPA 227 Query: 244 LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAG 301 LL + F+ M QF K A +A V + S H +R AT + G Sbjct: 228 LLGA--RAADALFVTARGDGMTRQQFWNIIKRHAQQADVRAHLSPHTLRHAFATHLLNHG 285 Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRL 331 A + G + + YT A R RL Sbjct: 286 ADLRVVQLLLGHSDISTTQIYTHVA-RERL 314 >gi|254453341|ref|ZP_05066778.1| putative integrase for prophage CP-933U [Octadecabacter antarcticus 238] gi|198267747|gb|EDY92017.1| putative integrase for prophage CP-933U [Octadecabacter antarcticus 238] Length = 358 Score = 134 bits (338), Expect = 2e-29, Method: Composition-based stats. Identities = 62/345 (17%), Positives = 115/345 (33%), Gaps = 33/345 (9%) Query: 3 PSLRLPPFVTKER--TRHGKIIYYFRKGHGRRI---RLPYPHESTFIPAYMSALTGSTPK 57 P LP V + R G +++ G + + P P E F A+ Sbjct: 2 PRSNLPKGVHRVRRKVVSGVRYHFYAWRGGPKFWEGKEPNPKEPEFFHAFSQC------- 54 Query: 58 REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK 117 SP + TT L+ ++ SA A S+ + + ++ + Sbjct: 55 -GMPLSPAEYLTTH--LVDDFFSSASLPK-AERSKADIRKWLEFFRQEFEADPVAMFEER 110 Query: 118 HIRSGVESRK----HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173 R V S + H+P T L WAV + + + C +++ + Sbjct: 111 ASRGEVNSWRKKWLHSPKQHDMAGTHATRLLNWAVEEGKLKEHHCHKLKKLYQSNRTEII 170 Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN----NIFSIKTQKT 229 WT D+ QF + Q +GLR +D + + ++ +T K Sbjct: 171 WTNGDIAQFNKHAPKWVQ--RILAAGCETGLRAADLVQVKMDQFEDTPHGKRLRFRTSKR 228 Query: 230 GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN------ 283 G I + +L++ TP +E ++ + + A S +A + Sbjct: 229 GQIAYIPATSALEQLISETPEEQEILLVSELGRPLTARWASNQITKWRREAQIPPWIDGR 288 Query: 284 -KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 K+ R +AT +A + ++ GW A+ A Sbjct: 289 EKTLSDTRGTAATRLLNADLSLRQIAVLMGWSVRYAAQVIEHYAQ 333 >gi|254440057|ref|ZP_05053551.1| site-specific recombinase, phage integrase family protein [Octadecabacter antarcticus 307] gi|198255503|gb|EDY79817.1| site-specific recombinase, phage integrase family protein [Octadecabacter antarcticus 307] Length = 315 Score = 134 bits (338), Expect = 2e-29, Method: Composition-based stats. Identities = 47/284 (16%), Positives = 93/284 (32%), Gaps = 28/284 (9%) Query: 74 LISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV---ESRKHT 129 I + ++ A A N+++++ + + +T H+ + ++ Sbjct: 11 WIQAFLEAQAAELDAATNTQLAYARDLIDFSERLKGIHFAAVTQDHVEKYLIWCDAHGLA 70 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW--- 186 S+ + L++++ LF++A + + NP + V P R + + +++ + Sbjct: 71 KSTRARRLSAIKQLFRFAFEEGWRVDNPAIQVSGPGRDKRLPKTLSHDEVDALLNAARDA 130 Query: 187 -SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFMKL 244 E + E L +G+R ++ V + + + K V L Sbjct: 131 KKEPLRTTCLMELLYATGMRVTELVSLPVSAARGDPRMLLVRGKGDKERMVPLSPPARAA 190 Query: 245 LAM----------------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKS 285 A+ TP K F + F K A GV + Sbjct: 191 TAIWLKTRDRTEDEAFKDGTPRSKFLFPSRGKLGHLTRQSFFNLIKDLALAGGVPPFKAT 250 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 H +R AT + GA + G V E YT D Sbjct: 251 PHTMRHAFATHLLEGGADLRSIQTLLGHADVATTEIYTHVLDER 294 >gi|298368470|ref|ZP_06979788.1| tyrosine recombinase XerD [Neisseria sp. oral taxon 014 str. F0314] gi|298282473|gb|EFI23960.1| tyrosine recombinase XerD [Neisseria sp. oral taxon 014 str. F0314] Length = 292 Score = 134 bits (338), Expect = 2e-29, Method: Composition-based stats. Identities = 46/263 (17%), Positives = 97/263 (36%), Gaps = 18/263 (6%) Query: 85 GSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRV 142 L+ N+ S+ +++ + G D+ + + + + + SS + L++ + Sbjct: 18 HRLSQNTLQSYRRDLEKVAARLRQGGKDWFGAAAEDLAAAIYVPEEKASSQARALSACKR 77 Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAFEF 198 L+ W E A NP + P ++ T+ +++ + G + + E Sbjct: 78 LYAWLEETEKRADNPTRFLTSPHKEQPLPGLITEAQIEKLLAAPDVDTPHGLRDKTLLEV 137 Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGKETF-- 255 + +GLR +++ + + L N I T K V L + + + Sbjct: 138 MYATGLRVTEAVKLKMSDLDLNKGWINTIGKGDKQRYVPLGEEAVYWIERYCAESRPLLL 197 Query: 256 --------FINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHE 306 F++ K ++ + K A AG+ S HG+R AT + GA Sbjct: 198 KNKICDELFVSQKKSGISRQLAWMIVKEYADAAGIRSLSPHGLRHAFATHLVNHGADLRV 257 Query: 307 LMATYGWKTVDQAETYTKGADRI 329 + G + + YT A++ Sbjct: 258 VQMLLGHADISTTQIYTHVANQR 280 >gi|115380783|ref|ZP_01467658.1| integrase [Stigmatella aurantiaca DW4/3-1] gi|115362213|gb|EAU61573.1| integrase [Stigmatella aurantiaca DW4/3-1] Length = 253 Score = 134 bits (338), Expect = 2e-29, Method: Composition-based stats. Identities = 43/227 (18%), Positives = 85/227 (37%), Gaps = 18/227 (7%) Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 + +R + S + L ++R ++ + +++ +P ++ P+ + T E+++Q Sbjct: 2 QLGARGLSKRSQARHLAAVRGFHRFLIAEKHAEKDPTEDLDTPRSARKLPSFLTLEEVEQ 61 Query: 182 FKS----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-IITVE 236 + G + + E L +GLR S+ C G+ +Q + + G+ V Sbjct: 62 LLAAPDERHPTGMRDKAMLELLYATGLRVSELCSLGINDVQLGAGYLVAKGKGSKERVVP 121 Query: 237 LPDGFMKLLAM----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-- 284 + ++ + + FI F K A KAG+ K Sbjct: 122 VGSVAVEKVQAYLGGPRQHLLGKRQSRSLFITPRGGAFTRQGFWKLLKRYALKAGIRKPI 181 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 S H +R AT + GA + A G + + YT + RL Sbjct: 182 SPHKLRHSFATHLVERGADLRAVQAMLGHADLATTQIYTH-VNSARL 227 >gi|198284552|ref|YP_002220873.1| tyrosine recombinase XerD [Acidithiobacillus ferrooxidans ATCC 53993] gi|218667700|ref|YP_002427220.1| tyrosine recombinase XerD [Acidithiobacillus ferrooxidans ATCC 23270] gi|198249073|gb|ACH84666.1| tyrosine recombinase XerD [Acidithiobacillus ferrooxidans ATCC 53993] gi|218519913|gb|ACK80499.1| tyrosine recombinase XerD [Acidithiobacillus ferrooxidans ATCC 23270] Length = 302 Score = 134 bits (338), Expect = 2e-29, Method: Composition-based stats. Identities = 44/275 (16%), Positives = 99/275 (36%), Gaps = 23/275 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITT-----KHIRSGVESRKHTPSSAIQFLTS 139 +L N+ ++ Q+ ++D T I S ++ L+S Sbjct: 24 KNLGENTLTAYRQDLLQVAAALAEWDLTLTTADDGALARILGQRLQSGAALRSVVRLLSS 83 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195 +R + +A R+ +V+ +P +++ P+ ++ +++ + G + Sbjct: 84 VRRFYGYAEREGWVSRDPSRNLQSPRIGRVLPHVLSETEIEALLAAPDCTHPLGLRDAAM 143 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIITVELPD-------GFMKLLAM 247 E + GLR S+ + + + + K V + + ++++ Sbjct: 144 LELMYACGLRVSELVNLETRQVDLSADMVVVFGKGRKERLVPMGEVAAGRVTQYLQMGRP 203 Query: 248 TPIGKE---TFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302 +G+ F+ M +F + A AG+ + S H +R AT + GA Sbjct: 204 QILGQRISAALFVTGRGAAMTRQRFWQNIERYARSAGITQTVSPHSLRHAFATHLLNHGA 263 Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 + G + E YT A + RL +++ Sbjct: 264 DLRSVQLMLGHAALSTTEIYTHVA-QARLKALHAK 297 >gi|206603937|gb|EDZ40417.1| Integrase [Leptospirillum sp. Group II '5-way CG'] Length = 388 Score = 134 bits (338), Expect = 2e-29, Method: Composition-based stats. Identities = 55/316 (17%), Positives = 99/316 (31%), Gaps = 15/316 (4%) Query: 19 GKIIYYFR-KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISE 77 G I++ G+RIR ++ Y T S RK L + Sbjct: 17 GSGIWWVDFWHEGKRIRKKVGPKAQARAVYERLKTESRLGTLVPKPVRKHEPLFGELAEQ 76 Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTPSSAI 134 Y + + L + + GD + + +E + P++ Sbjct: 77 YIR---YADLHHKRKGDDTPRLKWWLDAFGDKLALTLKPYMVEEVMEKMNKEGYKPATIA 133 Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194 + L ++ ++ AV+ E + NP V PK +R T + ++ E P Sbjct: 134 RCLVVLKAVYNRAVKNEIIERNPIARVFAPKFDNSLVRYLTTDQEERLFEALPERLHP-- 191 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMTP--- 249 L++G R + + + + ++ K+G V + ++L P Sbjct: 192 IVTVALHTGCRQGELLKLVWEDVDFNAGTIFLRDTKSGDSRRVLMNSKVQEVLLALPGRD 251 Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELM 308 F + M F KAG+ H +R A+ A GA L Sbjct: 252 TPGAPVFTDTLGGPMEGRNLRRDFDRAIKKAGLAPFRFHDLRHTFASRLAMMGANDRTLQ 311 Query: 309 ATYGWKTVDQAETYTK 324 G K+ Y Sbjct: 312 TLLGHKSQRMILRYAH 327 >gi|188496064|ref|ZP_03003334.1| integrase [Escherichia coli 53638] gi|188491263|gb|EDU66366.1| integrase [Escherichia coli 53638] Length = 357 Score = 134 bits (338), Expect = 2e-29, Method: Composition-based stats. Identities = 62/341 (18%), Positives = 113/341 (33%), Gaps = 23/341 (6%) Query: 7 LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHE---STFIPAYMSALTGSTPKREYINS 63 LPP + R+ Y G+ L S I A + L+ + + Sbjct: 12 LPPNLY---IRNNGYYCYRDPRTGKEFGLGRDRRIAVSEAIQANIELLSENRRESLIDRI 68 Query: 64 PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123 TL + Y + + + + S I RK D I+TK + + + Sbjct: 69 KGADAITLHAWLDRYETILSERGIRPKTLLDYASKIRAIRRKLPDKPLNDISTKEVAAML 128 Query: 124 ESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 + + +SA +++ +F+ A+ + +VA NP + K + R E ++ Sbjct: 129 NTYVAEGKAASAKLIRSTLVDVFREAIAEGHVATNPVTATRTAKSEVRRSRLTANEYIEI 188 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241 + + RLA + + +G R D CR + +N I+ KTG I + L Sbjct: 189 YHAAEPLPIWLRLAMDLAVITGQRVGDLCRMKWSDINDNHLHIEQGKTGAKIAIPLTLTI 248 Query: 242 MKL---------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-----NKSAH 287 L G ET + + ++ S +F +G+ + H Sbjct: 249 DALNISLVDTLQKCREASGSETVIASTHHEPLSPKTVSKYFTKARNASGLSFDGDPPTFH 308 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 +R + G K+ A Y R Sbjct: 309 ELR-SLSARLYRNQIGDKFAQRLLGHKSDSMAARYRDSRGR 348 >gi|254454844|ref|ZP_05068281.1| phage integrase [Octadecabacter antarcticus 238] gi|198269250|gb|EDY93520.1| phage integrase [Octadecabacter antarcticus 238] Length = 395 Score = 134 bits (338), Expect = 2e-29, Method: Composition-based stats. Identities = 62/341 (18%), Positives = 119/341 (34%), Gaps = 24/341 (7%) Query: 25 FRKGH-GRRIRLPYPHESTFIPAYMSA------LTGSTPKREYINSPRKKPTTLKWLISE 77 +RKG RRI L T A + A + E I RK P T+ L Sbjct: 45 YRKGGRTRRISLGRHGTLTVEQARLLAKEVLGDVAKGENPAEDIAQHRKAP-TVAALCER 103 Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIR-KSGDFDYRKITTKHIRSGVESRKHTPSSAIQF 136 + ++ +++ + D I G F + K + + P A + Sbjct: 104 FFQAHVMERCKPSTQGEYRRAIDMFINPALGSFKLVDLERKDVAELHHKFRDKPYQANRT 163 Query: 137 LTSMRVLFKWAVRQEYVAI--NPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG----- 189 L + +F A NPC V + R+ + R ++ ++Q+ + ++ Sbjct: 164 LGVLSKMFNLAEIWGLRPDGSNPCRHVPK-YREHKRERYLSQVELQRLGNVLADAELNGT 222 Query: 190 --SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM 247 AF L+ +G R + + + + KTG + LP +L+ Sbjct: 223 ETPHIIAAFRLLILTGCRLGEIQTLQWGFITDQGMELPDTKTGAR-RIPLPSAARAVLST 281 Query: 248 TP-IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAH 305 + + I +AT F ++ +AG+ H +R A+ + +G Sbjct: 282 LARVDGNPYVIVGKVAGKHATDFQHPWRRIRERAGLTGVRIHDLRHTYASNAVSSGMPIQ 341 Query: 306 ELMATYGWKTVDQAETYTKGAD--RIRLGIKNSRRISSVVD 344 + G + Y AD + +N+ R++++V Sbjct: 342 MVGRLLGHTQIQTTMRYAHLADDPVKKAAEENAERLNALVG 382 >gi|114320644|ref|YP_742327.1| tyrosine recombinase XerD [Alkalilimnicola ehrlichii MLHE-1] gi|114227038|gb|ABI56837.1| tyrosine recombinase XerD [Alkalilimnicola ehrlichii MLHE-1] Length = 304 Score = 134 bits (337), Expect = 2e-29, Method: Composition-based stats. Identities = 51/275 (18%), Positives = 97/275 (35%), Gaps = 23/275 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH-----IRSGVESRKHTPSSAIQFLTS 139 L + ++ S R G ++ + G + P S + LTS Sbjct: 26 QGLGERTLSAYRSDLLGFQRWLGGQGGSLLSARRDQVLAYLGGRLGQGAKPRSVARLLTS 85 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195 +R +++ +R+ VA +P VE P+ ++ ++++ + G + R Sbjct: 86 LRRFYRYQLREGRVAEDPTRDVESPRLGRPLPGGLSESEVERLLAAPDPETPLGQRDRCM 145 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGK-- 252 E L SGLR S+ + L + ++ K G V L + ++ + Sbjct: 146 LEVLYASGLRVSELVGLSLSELSLSQGLVRVVGKGGRERLVPLGETALEQVQQWLREGRP 205 Query: 253 --------ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302 + F+ + + F K A G+ + S H +R AT + GA Sbjct: 206 ALLGRRVSDAVFVTGRGEGLTRQAFWYRVKKHARSVGITRPISPHTLRHAFATHLLNHGA 265 Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 + G + + YT A R RL ++ Sbjct: 266 DLRVVQLLLGHSDLSTTQIYTHVA-RQRLQTLHAE 299 >gi|114771054|ref|ZP_01448494.1| tyrosine recombinase XerD [alpha proteobacterium HTCC2255] gi|114548336|gb|EAU51222.1| tyrosine recombinase XerD [alpha proteobacterium HTCC2255] Length = 308 Score = 134 bits (337), Expect = 2e-29, Method: Composition-based stats. Identities = 45/287 (15%), Positives = 100/287 (34%), Gaps = 33/287 (11%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH-----IRSGVESRK 127 LI + ++ H + + N+ ++++ + R +++ Sbjct: 7 LIDNFLETIHAERNASKNTLLAYKRDLEAFTRFLSKKRIDLYKANRKDIENYIISLDNHG 66 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK-SFW 186 + S+ + L++++ ++++ + + NP ++ PK K + ++ ++ + + Sbjct: 67 MSESTRARHLSTIKQIYRYGYDESLIKDNPSNEIKGPKSKRKLPNYLSENEINKLLDTST 126 Query: 187 SEGSQPR------LAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPD 239 G PR L +G+R S+ V ++ N + K G V L Sbjct: 127 QIGRSPRDKKRNTCLMHVLYATGMRVSELVSLPVISVRGNPEMLLIKGKGGKERLVPLST 186 Query: 240 GFMKLLAMTPIG---------------KETFFINNDK-QKMNATQFSIWFKAKATKAGV- 282 +A + + F ++ K + +F ++ K KAG+ Sbjct: 187 PAKMAIAAYLVDWNSQQEINKKKGLQESKFLFPSHSKLGHITRVRFYVFIKELCIKAGIS 246 Query: 283 --NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 S H +R A+ GA + G V E YT D Sbjct: 247 PNKVSPHTLRHAFASHLLANGADLRVIQMLLGHADVATTEIYTHVLD 293 >gi|145219991|ref|YP_001130700.1| tyrosine recombinase XerD [Prosthecochloris vibrioformis DSM 265] gi|145206155|gb|ABP37198.1| tyrosine recombinase XerD [Chlorobium phaeovibrioides DSM 265] Length = 306 Score = 134 bits (337), Expect = 2e-29, Method: Composition-based stats. Identities = 45/265 (16%), Positives = 92/265 (34%), Gaps = 25/265 (9%) Query: 85 GSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGVESRKHT---PSSAIQFLTS 139 + + N+R S+ + + ++ + G I I ++ T SS + +++ Sbjct: 25 RNFSPNTRDSYRNDLQRYLQAMQEGCGSLEAINPDSINRFLDELHKTGLEASSIARNVSA 84 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-------WSEGSQP 192 +R L ++ + + NP ++ +PK T ++ + + Sbjct: 85 IRSLHRFLINDRVLESNPAENLHQPKLPKYLPSVLTLDETMRILQAPAQKVPPEKLYLRD 144 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLA----- 246 + E L +G+R S+ Q+L I+ K V + + L Sbjct: 145 QAILELLYATGMRVSELVNLKQQNLYLPEQFIRVFGKGSKERLVPVGSSAVNSLTLYRQK 204 Query: 247 -----MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299 ++ F+N +KM+ K A AG+ K S H R AT + Sbjct: 205 LRIQLAGAQSEDCLFLNARGKKMSRMAVFTIVKEYAMLAGIPKTVSPHTFRHTFATHLLE 264 Query: 300 AGATAHELMATYGWKTVDQAETYTK 324 GA + G ++ + Y+ Sbjct: 265 GGADLRAVQEMLGHSSIVATQIYSH 289 >gi|170769153|ref|ZP_02903606.1| integrase protein [Escherichia albertii TW07627] gi|170121805|gb|EDS90736.1| integrase protein [Escherichia albertii TW07627] Length = 339 Score = 134 bits (337), Expect = 2e-29, Method: Composition-based stats. Identities = 60/335 (17%), Positives = 104/335 (31%), Gaps = 39/335 (11%) Query: 7 LPPFVTKERTRHGKIIYYFRKGHGR-----RIRLPYPHESTFIPAYMSALTGSTPKREYI 61 LPP V Y K G R+ + Y E Sbjct: 13 LPPRVRS------NGYSYVWKPEGSTRTIGLGRVRETSVAKVWQNY-----------ELE 55 Query: 62 NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121 + T+ L + S + LA ++ + + ++ G + + +R Sbjct: 56 KAKLHNIMTVAKLWHMFMDSPAFTELAPRTQKDYRQHQRALLAVFGKVLADNVKIEQVRI 115 Query: 122 GVESRK-HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 ++ R + + A L S+ ++ W + YV NPC V + K + T E Sbjct: 116 FMDKRGLESKTQANHELASLSRVYGWGYERGYVKNNPCKGVRKFTLKARTVYI-TDEQYA 174 Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240 + Q R+A E R D Q + + I+ KTGT E Sbjct: 175 AIYA--EAIPQLRIAMEISYLCAARLGDVLELKWQDIMDKGIYIEQNKTGTKQIKEWSPR 232 Query: 241 FMKLLAMT----PIGKETFFINNDKQKMNATQFSIWF----KAKATKAGVN--KSAHGVR 290 + + E K+ A + W+ +A KAGV + H + Sbjct: 233 LRTAIQLARNVSSGTCEYVISTTKGGKVIAKTLNNWWNQAKRAAEQKAGVPFGCNFHDI- 291 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 K + ++ + G KT +Q Y + Sbjct: 292 KAKGISDYE--GSSRDKQIFSGHKTENQVLIYDRK 324 >gi|218442353|ref|YP_002380677.1| integrase family protein [Cyanothece sp. PCC 7424] gi|218175457|gb|ACK74184.1| integrase family protein [Cyanothece sp. PCC 7424] Length = 273 Score = 134 bits (337), Expect = 2e-29, Method: Composition-based stats. Identities = 49/242 (20%), Positives = 96/242 (39%), Gaps = 8/242 (3%) Query: 88 AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT--PSSAIQFLTSMRVLFK 145 + + IS++ + Q + G R +T + V T P + + +++ LF Sbjct: 22 SKTTIISYQCHIKQFLEFVG-KPLRDVTLDDLSLWVNRLNLTYQPVTVANKILTVKSLFS 80 Query: 146 WAVRQEYVAINPCLSVERPKRK-TEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGL 204 +A R Y+ +N ++ PK K T R K ++++ + + + + GL Sbjct: 81 FACRVGYLTVNVGSFIKSPKLKDTLAERILEKAEVKRLINATP-NERDSVLLSLMYGCGL 139 Query: 205 RCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM 264 R S+ C L+N ++ + T + + +P L P E F++ ++ Sbjct: 140 RVSEVCGLNWSDLRNGKATVFGKGAKTRVVI-IPPNLWDRLMQLPRDGEAVFMSRRGNRL 198 Query: 265 NATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 T K K+GV S+H +R A+ + +AG L + G ++ E Y Sbjct: 199 ERTYIHKMIKECCHKSGVSEKASSHWLRHSHASHAVEAGCNLRLLQQSLGHSKLETTEKY 258 Query: 323 TK 324 Sbjct: 259 LH 260 >gi|264677254|ref|YP_003277160.1| tyrosine recombinase XerD [Comamonas testosteroni CNB-2] gi|262207766|gb|ACY31864.1| tyrosine recombinase XerD [Comamonas testosteroni CNB-2] Length = 318 Score = 134 bits (337), Expect = 2e-29, Method: Composition-based stats. Identities = 58/312 (18%), Positives = 106/312 (33%), Gaps = 28/312 (8%) Query: 49 SALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF----DQIIR 104 A P P+ + L I L+ N+ ++ + R Sbjct: 7 KARESQIPDDWPPPLPQSQ-HALDQFIDALLLED---GLSRNTLSAYRRDLTATARWLAR 62 Query: 105 KSGDFDYRKITTKHIRSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE 162 ++ +R +S+ + LT +R F WA+R++ +A +P + + Sbjct: 63 LQPPKALDAALEGDLQGYFTARVEGTKATSSNRRLTVLRRYFHWALREKRIAADPTVRML 122 Query: 163 RPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRLAFEFLLYSGLRCSDSCR--AGVQH 216 K+ + T+E ++ G + R E + SGLR S+ Sbjct: 123 AAKQPPRMPKTLTQEQVEALLDAPDVDSPLGLRDRAMLELMYASGLRVSELVGVCMHELD 182 Query: 217 LQNNIFSIKTQKTGTIITVE-------LPDGFMKLLAMTPIGKET--FFINNDKQKMNAT 267 L++ + + + + L + A+ G++T F+ M+ Sbjct: 183 LRSGVLRVTGKGRKERLVPFGQEAQHWLERYLQQARAVILGGQQTEEVFVTQRGAGMSRV 242 Query: 268 QFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 F + K A AGVN S H +R AT + GA + G + YT Sbjct: 243 MFWVIVKKCAQIAGVNSPLSPHTLRHAFATHLLNHGADLRVVQMLLGHADISTTTIYTHV 302 Query: 326 ADRIRLGIKNSR 337 A R RL ++ Sbjct: 303 A-RERLKALHAE 313 >gi|193215186|ref|YP_001996385.1| tyrosine recombinase XerD [Chloroherpeton thalassium ATCC 35110] gi|193088663|gb|ACF13938.1| tyrosine recombinase XerD [Chloroherpeton thalassium ATCC 35110] Length = 305 Score = 134 bits (337), Expect = 2e-29, Method: Composition-based stats. Identities = 49/271 (18%), Positives = 102/271 (37%), Gaps = 27/271 (9%) Query: 85 GSLAVNSRISFE----SYFDQIIRKSGDFD-YRKITTKHIRSGVESRKHTPSSAIQFLTS 139 +L+ N++ S+ Y + + D R + + + SS + +++ Sbjct: 23 RNLSENTKASYAHDLTRYLLYVQDSHENLDEVRAEDVRKFITELHDLGLEASSISRNISA 82 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS--FWSEGSQPRLA-- 195 +R L K+ ++ + N V PK ++++ + E +P+LA Sbjct: 83 IRSLHKFLSAEKKIRKNVAEEVILPKLGKYLPTVLNQQEVDKLLEMPLHPENPKPKLAIR 142 Query: 196 ----FEFLLYSGLRCSDSCRAGVQH-LQNNIFSIKTQKTGTIITVELP-------DGFMK 243 EFL +G+R S+ Q+ ++ F+ K V + + + K Sbjct: 143 DKAILEFLYATGVRVSELVELKQQNLFFDSGFARIFGKGAKERLVPVGSSAIHAVETYQK 202 Query: 244 LLAMTPIGKET---FFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISA 298 + + + + + F+N +K+ + A +AG+ KS H +R AT Sbjct: 203 TIRIKLVNRASADFLFLNARGKKLTRMSIYNIVQEYAQQAGIEKSISPHTLRHSFATHLL 262 Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRI 329 + GA + G ++ + YT DR Sbjct: 263 EGGADLRSVQEMLGHSSIKATQIYTH-VDRA 292 >gi|325919208|ref|ZP_08181257.1| tyrosine recombinase XerD subunit [Xanthomonas gardneri ATCC 19865] gi|325550308|gb|EGD21113.1| tyrosine recombinase XerD subunit [Xanthomonas gardneri ATCC 19865] Length = 323 Score = 134 bits (337), Expect = 2e-29, Method: Composition-based stats. Identities = 45/272 (16%), Positives = 95/272 (34%), Gaps = 29/272 (10%) Query: 86 SLAVNSRISFESYFDQIIR-----KSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSM 140 +A + S+ + + R G + +++P S + L+++ Sbjct: 39 GVARQTLDSYRRDLEGLARWRDGAGGGLLGVDRAAVFDYLRWRSEARYSPRSTARLLSTL 98 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRLAF 196 R + +R+ + +P ++ P + T+ ++ + G + R Sbjct: 99 RAFYGLCLREGLRSDDPTALIDPPHLPRSLPKALTESQIEALLAAPDIDSPLGLRDRAML 158 Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-------------ELPDGFMK 243 E + +GLR S+ + ++ G+ + L + Sbjct: 159 ELMYAAGLRVSELVNLPAVGVNLRQGVLRVTGKGSKDRLVPLGEESQHWLERYLHEARPL 218 Query: 244 LLAMTPI----GKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATI 296 L + P+ G+ F++ +Q + QF K A AG++ S HG+R AT Sbjct: 219 LASHKPVASVDGQVPLFVDAARQPPSRQQFWALVKRYAAVAGIDPDTVSPHGLRHSFATH 278 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADR 328 + GA L G ++ + YT A + Sbjct: 279 LLNHGADLRALQMLLGHSSLSTTQIYTLVARQ 310 >gi|237746874|ref|ZP_04577354.1| tyrosine recombinase XerD [Oxalobacter formigenes HOxBLS] gi|229378225|gb|EEO28316.1| tyrosine recombinase XerD [Oxalobacter formigenes HOxBLS] Length = 303 Score = 134 bits (337), Expect = 2e-29, Method: Composition-based stats. Identities = 43/267 (16%), Positives = 93/267 (34%), Gaps = 23/267 (8%) Query: 86 SLAVNSRISFESYFD----QIIRKSGDFDYRKITTKHIRSGVESR--KHTPSSAIQFLTS 139 L+ N+ ++ + + ++T + S +R + +SA + LT Sbjct: 15 GLSQNTLDAYRRDMQLFAQWLEKNGPGTRLLEVTPDILNSYFLARHSESKATSANRRLTV 74 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ----QFKSFWSEGSQPRLA 195 ++ ++ R +A+NPC + K+ ++ ++ + G + R Sbjct: 75 LKRFYRLQFRLGRLAVNPCQKMHAAKQPARFPGTLSETQVESLLIAPRVENPLGLRDRTM 134 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT---------IITVELPDGFMKLLA 246 E + SGLR S+ + + N ++ G+ + + + Sbjct: 135 IELMYASGLRVSELVTLKLVEVGMNEGVLRILGKGSKTRLVPFGEEARIWIERYMRESRP 194 Query: 247 MTPIGK--ETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGA 302 GK + F+ M F + A ++G++ S H +R AT + GA Sbjct: 195 FILAGKVSDYLFVTARGTSMTRQMFWTLIRKYALQSGIHEPLSPHTLRHAFATHLLNHGA 254 Query: 303 TAHELMATYGWKTVDQAETYTKGADRI 329 + G + + YT A + Sbjct: 255 DLRVVQLLLGHADISTTQIYTHVAQQR 281 >gi|255532069|ref|YP_003092441.1| tyrosine recombinase XerD [Pedobacter heparinus DSM 2366] gi|255345053|gb|ACU04379.1| tyrosine recombinase XerD [Pedobacter heparinus DSM 2366] Length = 299 Score = 134 bits (337), Expect = 2e-29, Method: Composition-based stats. Identities = 48/265 (18%), Positives = 94/265 (35%), Gaps = 25/265 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFD-------YRKITTKHIRSGVESRKHTPSSAIQFL 137 SL+ NS ++ +++ + D KH S + PS+ + + Sbjct: 18 RSLSGNSIEAYLGDLNKLSQYFESVDQTPQVKEITGDDLKHFVSWINELGMLPSTQARVV 77 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ----QFKSFWSEGSQPR 193 + ++ F + + +E + +P +E P++ + +++ + EG + + Sbjct: 78 SGLKAFFSFLMLEEIITTDPSALLESPRQVKHLPDTLSIQEINGMIGAIDASKPEGMRNK 137 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG--------FMKL 244 E L GLR S+ + + I+ K V + + Sbjct: 138 AILETLYGCGLRVSELSNLKISDVFEENEFIRIFGKGNKERLVPIGQTALKYINIYLRES 197 Query: 245 LAMTPIGK---ETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISAD 299 PI K + F+N +++ KA A K+G+ KS H R AT + Sbjct: 198 RVHVPIKKGHEDYIFLNRSGTRLSRISVFSIIKALALKSGIKKSISPHTFRHSFATHLIE 257 Query: 300 AGATAHELMATYGWKTVDQAETYTK 324 GA + G ++ E YT Sbjct: 258 GGADLRAVQEMLGHSSITTTEIYTH 282 >gi|311278186|ref|YP_003940417.1| tyrosine recombinase XerD [Enterobacter cloacae SCF1] gi|308747381|gb|ADO47133.1| tyrosine recombinase XerD [Enterobacter cloacae SCF1] Length = 298 Score = 134 bits (337), Expect = 2e-29, Method: Composition-based stats. Identities = 45/270 (16%), Positives = 92/270 (34%), Gaps = 24/270 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTK-----HIRSGVESRKHTPSSAIQFLTS 139 +LA N+ ++ + T + ++ + + +S+ + L++ Sbjct: 19 KNLAENTLSAYRRDLTMVAAWLQHRGLSLETAQPGDLQNLLAERVDGGYKATSSARLLSA 78 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195 MR LF+ R++ +P + PK + ++ + + + + Sbjct: 79 MRRLFQHLYREKIRPDDPSAQLASPKLPQRLPKDLSEAQVDRLLQAPLVDQPLELRDKAM 138 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGKET 254 E L +GLR S+ + + ++ K V L + + L Sbjct: 139 LEVLYATGLRVSELVGLSMSDISLRQGVVRVIGKGNKERLVPLGEEAVYWLENYLEHGRP 198 Query: 255 FFIN----------NDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAG 301 + +N Q+M F K A AG++ S H +R AT + G Sbjct: 199 WLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYARLAGIDSEKLSPHVLRHAFATHLLNHG 258 Query: 302 ATAHELMATYGWKTVDQAETYTKGA-DRIR 330 A + G + + YT A +R+R Sbjct: 259 ADLRVVQMLLGHSDLSTTQIYTHVATERLR 288 >gi|284044544|ref|YP_003394884.1| tyrosine recombinase XerD [Conexibacter woesei DSM 14684] gi|283948765|gb|ADB51509.1| tyrosine recombinase XerD [Conexibacter woesei DSM 14684] Length = 320 Score = 134 bits (337), Expect = 2e-29, Method: Composition-based stats. Identities = 45/295 (15%), Positives = 96/295 (32%), Gaps = 33/295 (11%) Query: 67 KPTTLKWLISEYRKSAHW-GSLAVNSRISFESYF------------DQIIRKSGDFDYRK 113 + + + L+ ++ L+ N+ ++ S D + + GD Sbjct: 11 RTGSFEDLVLDFIAYLELERGLSRNTLEAYRSDLLQYGAYLDRAGKDALRVEHGD--LAA 68 Query: 114 ITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173 G ++ + + +R ++ R+E + +P ++ P R + + Sbjct: 69 FVGALAAGGDGRAPAAATTVQRKVACLRSFYRHLRREEILDRDPTAELKGPPRGKKLPKV 128 Query: 174 WTKEDMQ----QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQK 228 +++++Q Q + + R E + GLR S++ + L ++ K Sbjct: 129 LSRDEVQHLLSQPRGTGPAALRDRALLELMYACGLRASEAVDMQLDELDVDDGILRANGK 188 Query: 229 TGTIITVEL----PDGFMKLLAMTP------IGKETFFINNDKQKMNATQFSIWFKAKAT 278 V + D L ++ F+N + + A Sbjct: 189 GNKERLVPIGSKALDALRHYLTRGRPQMVGLREEKRVFVNQRGHGLTRQGLYKIVQRHAR 248 Query: 279 KAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIR 330 AG+ S H +R AT G L G + + YT A+R+R Sbjct: 249 TAGLGDKMSPHTLRHTFATHLLAGGCDLRSLQEMLGHADIATTQIYTHLSAERLR 303 >gi|56414990|ref|YP_152065.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197363919|ref|YP_002143556.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|56129247|gb|AAV78753.1| site-specific integrase/recombinase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197095396|emb|CAR60955.1| site-specific integrase/recombinase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 298 Score = 134 bits (337), Expect = 2e-29, Method: Composition-based stats. Identities = 43/265 (16%), Positives = 89/265 (33%), Gaps = 23/265 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESR---KHTPSSAIQFLTS 139 LA N+ ++ ++ +++ + R + +S+ + L++ Sbjct: 19 RDLAENTLSAYRRDLSMVVAWLHHRGKTLATAQADDLQTLLAERVEGGYKATSSARLLSA 78 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195 MR F+ R++Y +P + PK + ++ +++ + + Sbjct: 79 MRRFFQHLYREKYREDDPSAQLASPKLPQRLPKDLSEVQVERLLQAPLIDQPLELRDKAM 138 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGKET 254 E L +GLR S+ + + ++ K V L + + L Sbjct: 139 LEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVYWLETYLEHGRP 198 Query: 255 FFIN----------NDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAG 301 + +N Q+M F K A AG++ S H +R AT + G Sbjct: 199 WLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHAFATHLLNHG 258 Query: 302 ATAHELMATYGWKTVDQAETYTKGA 326 A + G + + YT A Sbjct: 259 ADLRVVQMLLGHSDLSTTQIYTHVA 283 >gi|224824183|ref|ZP_03697291.1| tyrosine recombinase XerC [Lutiella nitroferrum 2002] gi|224603602|gb|EEG09777.1| tyrosine recombinase XerC [Lutiella nitroferrum 2002] Length = 323 Score = 134 bits (337), Expect = 2e-29, Method: Composition-based stats. Identities = 48/292 (16%), Positives = 100/292 (34%), Gaps = 19/292 (6%) Query: 51 LTGSTPKREYINSPRKKPTTLKW--LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD 108 ++ S + + P++ W I+ Y +S + ++R ++ + G Sbjct: 1 MSTSPQDVPDPSPEQSVPSSTSWEQRIAGYDQSLQLAGKSPHTRSAYRRDLQALAALQGA 60 Query: 109 FDYRKITTKHIR---SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK 165 D +T + IR + + ++ H S + L++ R F W + QE + NPC + PK Sbjct: 61 QDPATLTAQQIRLAVARLHAKGHIGRSLARMLSAWRGFFDWLIEQEKLPANPCHGIRPPK 120 Query: 166 RKTEGIRPWTKEDMQQFKSF-----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN 220 + + + + FE L GLR S+ + L Sbjct: 121 SPKTLPKALPVDATSALLDAPIDPEDDLALRDQAMFELLYSCGLRLSELTGLDLADLDLG 180 Query: 221 IFSIKTQKTGTIITV-----ELPDGFMKLLAMTP--IGKETFFINNDKQKMNATQFSIWF 273 + G + + + LA+ P G+ F ++++ Q Sbjct: 181 EGLLTAHGKGNKTRILPIGRQARQALERWLAIRPSQPGEGAVFTGKSGRRLSGRQVEKRL 240 Query: 274 KAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 + A + G ++ H +R A+ + + G + + YT Sbjct: 241 EQWAQRHGSDRHVHPHMLRHSFASHLLQSSGDLRAVQELLGHANLSTTQIYT 292 >gi|33151294|ref|NP_872647.1| site-specific tyrosine recombinase XerD [Haemophilus ducreyi 35000HP] gi|71153413|sp|Q7VPN8|XERD_HAEDU RecName: Full=Tyrosine recombinase xerD gi|33147514|gb|AAP95036.1| integrase/recombinase XerD [Haemophilus ducreyi 35000HP] Length = 297 Score = 134 bits (337), Expect = 2e-29, Method: Composition-based stats. Identities = 41/280 (14%), Positives = 102/280 (36%), Gaps = 25/280 (8%) Query: 71 LKWLISEYRKSAHW--GSLAVNSRISFESYFD----QIIRKSGDFDYRKITTKHIRSGVE 124 L +I ++ + W SL+ N+ +S+ + ++ + Sbjct: 4 LDPIIEQFLDTL-WLEQSLSHNTLLSYRLDLELFSAWLVEPRAFLTLTHTDLQLFLGDRL 62 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----Q 180 + + SS+ + ++ +R F++ ++Y +P + P+++ + + ++E + Sbjct: 63 DKGYKSSSSARIISCLRKFFRFLCLEKYRLDDPTSMLISPRKRVQLPKSLSEEQVMDLLD 122 Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPD 239 + + E L +GLR ++ + +L ++ K V + + Sbjct: 123 APNPLDPIELRDKAMLELLYATGLRVTELISLTIDNLNLRQGVVRVIGKGDKERLVPIGE 182 Query: 240 G----------FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK---SA 286 + +++ ++ + F + ++M F K A AG++ S Sbjct: 183 EASYWIQEFFDYGRMILLSDQQSDVLFPSRRAKQMTRQTFWHRIKYYAILAGIDAEKLSP 242 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 H +R AT + GA + G + + YT A Sbjct: 243 HVLRHAFATHLINHGADLRVVQMLLGHSDLSTTQIYTHVA 282 >gi|166713420|ref|ZP_02244627.1| site-specific tyrosine recombinase XerD [Xanthomonas oryzae pv. oryzicola BLS256] Length = 323 Score = 134 bits (337), Expect = 2e-29, Method: Composition-based stats. Identities = 46/273 (16%), Positives = 92/273 (33%), Gaps = 29/273 (10%) Query: 85 GSLAVNSRISFESYFDQIIR-----KSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139 +A + S+ + + R G + ++P S + L++ Sbjct: 38 QGVARQTLESYRRDLEGLARWRDGAGGGLLGIDRAALFDYLRWRAQATYSPRSTARLLST 97 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195 +R + W +R + +P ++ P+ + T+ ++ + G + R Sbjct: 98 LRAFYGWCLRDGVRSDDPTALIDPPQLPRSLPKALTESQIEALLAAPEVDTPAGLRDRAM 157 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-ITVELPDGFMKLLA-------- 246 E + +GLR S+ + ++ G+ V L + L Sbjct: 158 LELMYAAGLRVSELVNLPAVGVNLRQGVLRVTGKGSKDRLVPLGEESQHWLERYLRQARP 217 Query: 247 --------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSAT 295 G+ FI+ +Q ++ F K A AG++ S HG+R AT Sbjct: 218 LLAANKPVAAVDGQVPLFIDAARQALSRQHFWALVKRYAAVAGIDPATVSPHGLRHSFAT 277 Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADR 328 + GA L G ++ + YT A + Sbjct: 278 HLLNHGADLRALQMLLGHSSLSTTQIYTLVARQ 310 >gi|163857876|ref|YP_001632174.1| site-specific tyrosine recombinase XerD [Bordetella petrii DSM 12804] gi|163261604|emb|CAP43906.1| integrase/recombinase [Bordetella petrii] Length = 310 Score = 134 bits (337), Expect = 2e-29, Method: Composition-based stats. Identities = 50/281 (17%), Positives = 90/281 (32%), Gaps = 30/281 (10%) Query: 86 SLAVNSRISFESYFDQIIR------KSGDFDYRKITTK----HIRSGVESR--KHTPSSA 133 LA N+ ++ R + G + I + +R ++A Sbjct: 25 GLAANTLAAYRRDLSAFARWLETPAEHGGAATASLLRDAGTGDIEAWFAARHADSRATTA 84 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----G 189 + L ++R + WA+R+ +PCL++ K+ + ++ + G Sbjct: 85 NRRLAALRRFYAWALREHRTGHDPCLTLSAAKQPPRMPKTLSEAQVDALLRAPDLNTARG 144 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT--QKTGTIITVELPDGFMKLLA- 246 + R E L +GLR S+ V + N ++ K G V L + Sbjct: 145 LRDRAMLETLYATGLRVSELVNIKVLEVSLNEGVVRVVMGKGGKDRLVPLGAEAAHWIDR 204 Query: 247 ---------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSAT 295 + F+ Q M F K A +GV S H +R AT Sbjct: 205 YLKEARPDLAGARVSDALFLTARAQPMTRQAFWQLIKKYAVVSGVRAPLSPHVLRHAFAT 264 Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336 + GA + G + + YT A + + Sbjct: 265 HLLNHGADLRVVQMLLGHADISTTQIYTHVARERLKALHAA 305 >gi|323141913|ref|ZP_08076774.1| tyrosine recombinase XerD [Phascolarctobacterium sp. YIT 12067] gi|322413660|gb|EFY04518.1| tyrosine recombinase XerD [Phascolarctobacterium sp. YIT 12067] Length = 297 Score = 134 bits (337), Expect = 2e-29, Method: Composition-based stats. Identities = 45/284 (15%), Positives = 105/284 (36%), Gaps = 28/284 (9%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKHT 129 L EY LA N+++++ +++ D + +++ + + + + K Sbjct: 6 ALFQEYLTVE--LGLAKNTQLAYMRDLRLLMKSLQLKADEELLQVSRQQLIAYLVRLKQE 63 Query: 130 PSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 +A + L S++ +++ + Y+ NP +E R + + +++++ Sbjct: 64 GRAASTVARKLASIKAFYRFLTAERYIRRNPAEVLEAASRGLHLPKVLSVQEVERLLDEP 123 Query: 187 SEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV------- 235 + G+ + + E L +G+R S+ V+++ + + G+ + Sbjct: 124 NLGTLDGYRDKTMLELLYATGMRVSELVNVPVKNVDMKMQYVIVMGKGSKERMLPLGRTA 183 Query: 236 ------ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAH 287 L +LL P F+ M +F A AG++K + H Sbjct: 184 LHYLEHYLSVVRPQLLHGKPDTAAELFVTGWGGPMTRERFYEIIVAYGKSAGISKRVTPH 243 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIR 330 +R AT + G + G + + YT +R+R Sbjct: 244 MLRHSFATHLLNNGTDLRIVQELLGHADISTTQIYTHLDVERLR 287 >gi|84622421|ref|YP_449793.1| site-specific tyrosine recombinase XerD [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|161899015|ref|YP_199478.2| site-specific tyrosine recombinase XerD [Xanthomonas oryzae pv. oryzae KACC10331] gi|84366361|dbj|BAE67519.1| integrase-recombinase XerD [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 323 Score = 134 bits (337), Expect = 2e-29, Method: Composition-based stats. Identities = 46/273 (16%), Positives = 93/273 (34%), Gaps = 29/273 (10%) Query: 85 GSLAVNSRISFESYFDQIIR-----KSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139 +A + S+ + + R G ++ ++P S + L++ Sbjct: 38 QGVARQTLESYRRDLEGLARWRAGAGGGLLGIDRVALFDYLRWRAQANYSPRSTARLLST 97 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195 +R + W +R + +P ++ P+ + T+ ++ + G + R Sbjct: 98 LRAFYGWCLRDGVRSDDPTALIDPPQLPRSLPKALTESQIEALLAAPEVDTPAGLRDRAM 157 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-ITVELPDGFMKLLA-------- 246 E + +GLR S+ + ++ G+ V L + L Sbjct: 158 LELMYAAGLRVSELVNLPAVGVNLRQGVLRVTGKGSKDRLVPLGEESQHWLERYLREARP 217 Query: 247 --------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSAT 295 G+ FI+ +Q ++ F K A AG++ S HG+R AT Sbjct: 218 LLAANKPVAAVDGQVPLFIDAARQALSRQHFWALVKRYAAVAGIDPAMVSPHGLRHSFAT 277 Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADR 328 + GA L G ++ + YT A + Sbjct: 278 HLLNHGADLRALQMLLGHSSLSTTQIYTLVARQ 310 >gi|258544388|ref|ZP_05704622.1| tyrosine recombinase XerD [Cardiobacterium hominis ATCC 15826] gi|258520347|gb|EEV89206.1| tyrosine recombinase XerD [Cardiobacterium hominis ATCC 15826] Length = 289 Score = 134 bits (337), Expect = 2e-29, Method: Composition-based stats. Identities = 44/268 (16%), Positives = 89/268 (33%), Gaps = 22/268 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI---QFLTSMR 141 LA S S+ ++ + + +++ + A + S+R Sbjct: 14 AGLAEASVASYRRDL-RLAERLCAKPLSDFSAADVQAVLAQLLDLQRKASSLARMRVSLR 72 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAFE 197 F W V + A +P + +E + + R ++ ++++ + G + E Sbjct: 73 RFFAWMVEERLRADDPTVLLEAVRHEKPLPRSLSEAEVERLLAAPDLATPAGLRDAAMLE 132 Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT-VELPDGFMKL----------LA 246 L GLR S+ + + ++ + G + V + + ++ L Sbjct: 133 LLYACGLRVSELVGLPLSAVFLQEAVLRVRGKGDKVRLVPMGEQAAEMVERYCREARPLL 192 Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATA 304 + + FI MN F A G+ S H +R AT + GA Sbjct: 193 LEGRVSDVLFIAARGGAMNRRTFWKLIHDYAIAVGIRTAVSPHTLRHAFATHLVNHGADL 252 Query: 305 HELMATYGWKTVDQAETYTKGADRIRLG 332 + G + + YT A+ RL Sbjct: 253 RVVQMLLGHSNLSTTQIYTHVAE-ARLA 279 >gi|108758883|ref|YP_632026.1| tyrosine recombinase XerD [Myxococcus xanthus DK 1622] gi|108462763|gb|ABF87948.1| tyrosine recombinase XerD [Myxococcus xanthus DK 1622] Length = 310 Score = 134 bits (337), Expect = 2e-29, Method: Composition-based stats. Identities = 45/270 (16%), Positives = 88/270 (32%), Gaps = 24/270 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS------GVESRKHTPSSAIQFLT 138 L+ + ++ + + +T + R S + L Sbjct: 16 RGLSGKTVDAYAADINVYFEDLRSRGVSDVTQARQEDVSAHLSALGKRGLGKRSQARHLA 75 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRL 194 ++R ++ V + +P ++ P+ + T E+++Q + E G + + Sbjct: 76 ALRGFHRFLVAERMADKDPTEDLDTPRSARKLPSFLTLEEVEQLLAAPDERTSTGVRDKA 135 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFMKLLAM------ 247 E L +GLR S+ C G+ +Q + + G V L ++ + Sbjct: 136 MLEVLYATGLRVSELCGLGINDVQLTAGYLVAKGKGAKERLVPLGSVAIEKVQAYLAESR 195 Query: 248 ----TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAG 301 + F+ F K A KAG+ S H +R AT + G Sbjct: 196 PAVLGRRKSQALFVTPRGSGFTRQGFWKLLKRYALKAGILKPLSPHKLRHSFATHLVERG 255 Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRL 331 A + G + + YT + RL Sbjct: 256 ADLRAVQQMLGHADLATTQIYTH-VNAARL 284 >gi|168703879|ref|ZP_02736156.1| integrase/recombinase [Gemmata obscuriglobus UQM 2246] Length = 301 Score = 134 bits (337), Expect = 2e-29, Method: Composition-based stats. Identities = 54/272 (19%), Positives = 101/272 (37%), Gaps = 27/272 (9%) Query: 85 GSLAVNSRISFESYFD------QIIRKSGDFDYRKITTKHIRS---GVESRKHTPSSAIQ 135 + + + S+ + K G TT+ +RS + + + S+ + Sbjct: 18 KNSSDKTVKSYREDLTQALGFVRDRTKKGHVAVGDWTTRTVRSFVSWLHEQGYAKSTIAR 77 Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQ 191 L ++R K+ R + +NP L++ PK+ + T D+Q+ + G + Sbjct: 78 RLAAVRSFSKYLCRAGVLDVNPALALRGPKQDKKLPHFLTLADVQKLLTAPPATDWAGRR 137 Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQKTGTIITVELPDGFMK------ 243 R E L SG+R S+ + L + + +++ + + + PD Sbjct: 138 DRAVLETLYASGIRVSELVGLDLLAVDLNDGVITVRGKGKKERLALLGPDAVKAITLWYE 197 Query: 244 ----LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATIS 297 LLA T E F+NN ++ AG++ S H +R AT Sbjct: 198 DRSALLARTGQETEAVFLNNKGGRLTTRSVGRLLSHHLKVAGLDPRTSPHTLRHSFATHM 257 Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRI 329 DAGA + G K++ + YT + Sbjct: 258 LDAGADIRGVQELLGHKSLATTQVYTHVTTQR 289 >gi|227541999|ref|ZP_03972048.1| site-specific tyrosine recombinase XerD [Corynebacterium glucuronolyticum ATCC 51866] gi|227182214|gb|EEI63186.1| site-specific tyrosine recombinase XerD [Corynebacterium glucuronolyticum ATCC 51866] Length = 360 Score = 134 bits (337), Expect = 2e-29, Method: Composition-based stats. Identities = 45/270 (16%), Positives = 88/270 (32%), Gaps = 24/270 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT---PSSAIQFLTSMR 141 A N+ S+ + G+ I I + ++S +S + L+++R Sbjct: 81 RGKARNTIASYRRDLASYLDFVGERSLDSIAATDIEAFLQSLGRHGLAVTSVRRMLSTIR 140 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRLAFE 197 +A + VA + + P + +++ + + + E Sbjct: 141 GFHAFARDEGIVADDVAHDITPPAMPQHLPDTLSVDEINTLIESQAGDSAVALRNKALLE 200 Query: 198 FLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKE 253 L +G R S+ V + + + + T K V + + + + Sbjct: 201 LLYGTGARISEVLSLAVDDITALEETDGILVLTGKGDKQRIVPVGSHARQAVDAYLVRGR 260 Query: 254 ----------TFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAG 301 F + M+ K AT+AG+ K S H +R AT + G Sbjct: 261 PQLNKGKSAALFLNVRGGKAMSRQSAWQVVKQAATEAGITKDISPHTLRHSFATHLLEGG 320 Query: 302 ATAHELMATYGWKTVDQAETYTK-GADRIR 330 A + G +V + YT AD +R Sbjct: 321 ADVRSVQELLGHASVTTTQIYTHITADSLR 350 >gi|19552635|ref|NP_600637.1| site-specific tyrosine recombinase XerD [Corynebacterium glutamicum ATCC 13032] gi|62390303|ref|YP_225705.1| site-specific tyrosine recombinase XerD [Corynebacterium glutamicum ATCC 13032] gi|34222909|sp|Q8NQL5|XERD_CORGL RecName: Full=Tyrosine recombinase xerD gi|21324187|dbj|BAB98812.1| Integrase [Corynebacterium glutamicum ATCC 13032] gi|41325640|emb|CAF21429.1| INTEGRASE/RECOMBINASE XERD [Corynebacterium glutamicum ATCC 13032] Length = 304 Score = 134 bits (337), Expect = 2e-29, Method: Composition-based stats. Identities = 53/277 (19%), Positives = 97/277 (35%), Gaps = 31/277 (11%) Query: 85 GSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIRSGVESRKH--------TPSSA 133 L+ N+ ++ ++ +G D R ITT H+ S V+ + + SSA Sbjct: 18 RGLSANTLSNYRRDVERYCDWLEAAGLDDIRDITTAHVESYVKDLRRGIDGQQALSASSA 77 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----- 188 + L R L K+A+ + VA + V P + ++ Sbjct: 78 GRALIVARGLHKFALMEGEVAADVAADVSPPAMGRHLPDTLSINEVALLIDAIPHSDIAT 137 Query: 189 --GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------EL 237 + R E L +G R S++ V + ++ G+ + + Sbjct: 138 PVDLRDRALVELLYGTGARISEAIGLAVDDVSEMPEVLRITGKGSKQRIVPFGSMAQQAV 197 Query: 238 PDGFMKLLAMTPIGKET-FFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSA 294 + ++ GK F+N ++ K +AG++K S H +R A Sbjct: 198 REYLVRARPALSKGKSHALFLNQRGGPLSRQSAWAVLKKTVERAGLDKDISPHTLRHSFA 257 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTK-GADRIR 330 T + GA + G +V + YT AD +R Sbjct: 258 THLLEGGADVRVVQELLGHSSVTTTQIYTHITADSLR 294 >gi|89072532|ref|ZP_01159104.1| tyrosine recombinase [Photobacterium sp. SKA34] gi|89051636|gb|EAR57089.1| tyrosine recombinase [Photobacterium sp. SKA34] Length = 298 Score = 134 bits (337), Expect = 2e-29, Method: Composition-based stats. Identities = 37/265 (13%), Positives = 92/265 (34%), Gaps = 23/265 (8%) Query: 85 GSLAVNSRISFESYFDQII-----RKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139 L+ N+ S+ + +++ + + + + + +S + +++ Sbjct: 19 RGLSENTLSSYRNDLTKLLRWLKQESRNVISVSVDDLQRYQQWLFDKDYKQTSRARMVSA 78 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195 +R LF++ R++ +P + + PK + ++ + + + Sbjct: 79 IRRLFQYLHREKMRDDDPSVMLVTPKLPKRLPKDLSEAQVDALLEAPDVNDPIELRDKAM 138 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLAMTP----- 249 E L +GLR ++ ++++ ++ T K V + + + + Sbjct: 139 LELLYATGLRVTELVTLTMENISLRQGVVRITGKGDKERLVPMGENAVDWIEQFIETGRP 198 Query: 250 -----IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKFSATISADAG 301 + F + ++M F K A AG++ S H +R AT + G Sbjct: 199 QLLGEKSSDVLFPSRRARQMTRQTFWHRIKHYAVLAGIDADTLSPHVMRHAFATHLLNYG 258 Query: 302 ATAHELMATYGWKTVDQAETYTKGA 326 A + G + + YT A Sbjct: 259 ADLRVVQMLLGHSDLSTTQIYTHVA 283 >gi|319654625|ref|ZP_08008706.1| hypothetical protein HMPREF1013_05328 [Bacillus sp. 2_A_57_CT2] gi|317393691|gb|EFV74448.1| hypothetical protein HMPREF1013_05328 [Bacillus sp. 2_A_57_CT2] Length = 328 Score = 134 bits (337), Expect = 2e-29, Method: Composition-based stats. Identities = 49/266 (18%), Positives = 99/266 (37%), Gaps = 12/266 (4%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSSA 133 I + + L+ + S+ + +K ITT IR + S +H SS Sbjct: 55 IQLFLSAKKLEGLSKVTLDSYLLELNTFSKKV-KKRVEDITTAEIRVFLGSFEHLKLSSV 113 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193 + L+ ++ F W +E++ +P ++ PK++ + + E+++ + + R Sbjct: 114 SRKLSVLKSFFGWLTAEEFLQRDPTTKIKPPKKEKRLPKALSIEELELLRESCKTN-RQR 172 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG----FMKLLAMT 248 E L +G R S+ + N S + K V K L Sbjct: 173 AFLEILYATGCRLSEVHALNKSGINNRTASCRVIGKGNKEREVYFSPKAMYHLRKYLMNR 232 Query: 249 PIGKETFFINNDK--QKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATA 304 E + K ++++ A +AG++K S H +R AT++ + GA Sbjct: 233 TDDCEALMVTERKPYRRLSQRGIQREISIIAKQAGLDKKISPHTMRHTFATLTLNNGADI 292 Query: 305 HELMATYGWKTVDQAETYTKGADRIR 330 + A G + + Y + + + Sbjct: 293 AAVQALLGHEDPATTQIYAQLTEEKK 318 >gi|163788788|ref|ZP_02183233.1| 3-dehydroquinate dehydratase [Flavobacteriales bacterium ALC-1] gi|159876025|gb|EDP70084.1| 3-dehydroquinate dehydratase [Flavobacteriales bacterium ALC-1] Length = 302 Score = 134 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 54/293 (18%), Positives = 97/293 (33%), Gaps = 32/293 (10%) Query: 71 LKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGV---- 123 + I++YR L+ NS ++ ++I + ITT + Sbjct: 3 WQQAITDYRHYLQIERGLSKNSIENYCYDIKKLIVYLEENALIVSPITTDNAIVKQFIYT 62 Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 S+ S + ++ +R F + + + Y NP +E P+ + + +D+ Sbjct: 63 ISKSLNARSQARLISGLRNFFDYLIFENYRETNPLDLIESPRIGRKLPDTLSIDDIDNLV 122 Query: 184 SFWSE---------GSQPRLAFEFLLYSGLRCSDSCRAGVQH--LQNNIFSIKTQKTGTI 232 + G + R E L GLR S+ + + T K Sbjct: 123 NNIDLSYQYNGVNLGERNRAIIETLYSCGLRVSELIELKISDLFFDEGFIKV-TGKGDKQ 181 Query: 233 ITVELP----------DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282 V + G + + P K+ F+N +K+ K K+G+ Sbjct: 182 RFVPIGLTTQNYIAIWIGIRNHIEVQPNSKDNLFLNYKGKKLTRAMIFTIIKKLVEKSGI 241 Query: 283 NK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 K S H R AT + GA + G +++ E Y DR L Sbjct: 242 TKNVSPHTFRHSFATHLLENGADLRAIQMMLGHESITTTEIYMH-VDRSHLSD 293 >gi|227504282|ref|ZP_03934331.1| site-specific tyrosine recombinase XerD [Corynebacterium striatum ATCC 6940] gi|227199121|gb|EEI79169.1| site-specific tyrosine recombinase XerD [Corynebacterium striatum ATCC 6940] Length = 298 Score = 134 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 48/263 (18%), Positives = 89/263 (33%), Gaps = 23/263 (8%) Query: 90 NSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSM--RVLFKWA 147 N R Y + G D + + ++ + ++A + R L K+ Sbjct: 27 NYRRDVRRYLGWLADN-GIDDLADVDRGMVEEYLKFLRGGLAAASASRALIVARGLHKFG 85 Query: 148 VRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS-------QPRLAFEFLL 200 V + + ++ V PK +++++ +G + R E L Sbjct: 86 VAEGVLDVDVAGEVAPPKNAAHLPETLRVDEVEKLIDSVPDGETATPIDIRDRALLEMLY 145 Query: 201 YSGLRCSDSCRAGVQHLQN-NIFSIKTQKTGTIITVELPDGFMK-----LLAMTPI---- 250 +G R S+ V + + + + T K V + K L+ P+ Sbjct: 146 GTGARISEVIALSVDDMSDNDGILVLTGKGNKQRMVPVGSQAQKAVEEYLVRARPVLSKG 205 Query: 251 GKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELM 308 F+N ++ K +AG+NKS H +R AT + GA + Sbjct: 206 KSHALFLNTRGGALSRQSAWAALKLAVQRAGLNKSISPHTLRHSFATHLLEGGADVRTVQ 265 Query: 309 ATYGWKTVDQAETYTK-GADRIR 330 G +V + YT AD +R Sbjct: 266 ELLGHSSVTTTQIYTHVTADSLR 288 >gi|255282461|ref|ZP_05347016.1| tyrosine recombinase XerD [Bryantella formatexigens DSM 14469] gi|255267045|gb|EET60250.1| tyrosine recombinase XerD [Bryantella formatexigens DSM 14469] Length = 304 Score = 134 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 42/286 (14%), Positives = 96/286 (33%), Gaps = 31/286 (10%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTK------HIRSGVESRKHTPSSAIQFLT 138 + + ++ +S++ ++ K+ +E + SS + + Sbjct: 26 KNASNSTVMSYQRDLKKLFHYLSGKGVEKVQDVTATSLNSYILQMEKEGFSTSSVSRTIA 85 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQFKSFWSEGSQPRL 194 S+R F + V+ + V +P +++ P + + T E+ + Q + ++G + + Sbjct: 86 SIRAFFHFLVKTKAVTEDPSDNLKAPHVEKKTPEILTLEETVQLLNQPELDSAKGIRDKA 145 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM------- 247 E L +G+R S+ + + + + + + + K L Sbjct: 146 MLELLYATGMRVSELISMKLTDVNMAMGYVLCRDSDKERVIPFGTEAEKALKRYLEESRS 205 Query: 248 ---TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302 E F+N + M+ F K + +AG+ K + H +R GA Sbjct: 206 VLLKGKESEFLFVNCSGKSMSRQGFWKIIKFYSAQAGITKDITPHTLRHSFGAHLVQNGA 265 Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348 + G + + Y N RR+ + P Sbjct: 266 DLRAVQEMMGHSDISTTQIY---------MDMNVRRVREIYAKAHP 302 >gi|148655021|ref|YP_001275226.1| phage integrase family protein [Roseiflexus sp. RS-1] gi|254799356|sp|A5URM3|XERC_ROSS1 RecName: Full=Tyrosine recombinase xerC gi|148567131|gb|ABQ89276.1| phage integrase family protein [Roseiflexus sp. RS-1] Length = 313 Score = 134 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 42/276 (15%), Positives = 97/276 (35%), Gaps = 26/276 (9%) Query: 75 ISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDF------DYRKITTKHIRSGVESRK 127 + + + A +LA N+ ++ + DQ D + R+ Sbjct: 5 VEAFLRHLADERNLAANTIAAYRTDLDQFCDFVSARNRREWRDVSHDDILSFMLYLRERR 64 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF----- 182 + S+ + + +++ F + V +P ++ PK + R T + + Sbjct: 65 YASSTVARRVAAVKSFFAFLTGSGAVPHDPTERIDSPKVDRDLPRALTPHQVDELLELPL 124 Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGF 241 +S E + + E L +G+R S+ + + +++ T K G + + + Sbjct: 125 RSPTPERIRDKAMLELLYATGMRVSELVALNMTDIDLVHSTVRCTGKNGRVRVLPINGSA 184 Query: 242 MKLL------------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHG 288 L + + F+N+ +++ F + K A + G+ + H Sbjct: 185 ATALEEYCDNSRSQLARGSDAPIDALFLNHRGKRLTRQGFWLILKQYAEEMGLGELTPHM 244 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 +R A +AGA + G ++ + YT Sbjct: 245 LRHSFAVHMLNAGADLRAVQELLGHTSISTTQIYTH 280 >gi|116748125|ref|YP_844812.1| tyrosine recombinase XerD [Syntrophobacter fumaroxidans MPOB] gi|116697189|gb|ABK16377.1| tyrosine recombinase XerD subunit [Syntrophobacter fumaroxidans MPOB] Length = 294 Score = 134 bits (336), Expect = 3e-29, Method: Composition-based stats. Identities = 51/275 (18%), Positives = 100/275 (36%), Gaps = 23/275 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGD---FDYRKITTKHIRSGVES--RKHTPSSAIQFLTS 139 L+ N+ + +++ G + ++ + I S +ES + + S + L + Sbjct: 16 KGLSPNTVAGYGGDLQEMLGYFGKHGVSSWEAVSREDIVSYLESVSGRLSHRSKARRLAA 75 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLA 195 +R FK+ R ++ +P V PK + T ++ + + G+ + R Sbjct: 76 LRAFFKYLERTGKMSGSPAALVRFPKFNPGLPKTLTGREVDALLAAPAAGTPLGQRDRAM 135 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFMKLLAMTPIGKET 254 E L +GLR S+ + + + + G V + + + L + Sbjct: 136 LELLYATGLRVSELADLQLDQVHLEAGYLVARGKGDKERPVPMGEPAGEALQIYLRDGRR 195 Query: 255 ----------FFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGA 302 F+N K+ K A K+G+ N + H +R AT + GA Sbjct: 196 RLLKDGRSREVFLNRRAVKLTRQGIWKIIKQYALKSGIRQNLTPHVLRHSFATHLLENGA 255 Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 L A G + + YT A + RL + + Sbjct: 256 DLRSLQAMLGHADISTTQIYTHVA-KKRLKEVHLK 289 >gi|304383186|ref|ZP_07365659.1| probable integrase [Prevotella marshii DSM 16973] gi|304335657|gb|EFM01914.1| probable integrase [Prevotella marshii DSM 16973] Length = 407 Score = 134 bits (336), Expect = 3e-29, Method: Composition-based stats. Identities = 55/311 (17%), Positives = 105/311 (33%), Gaps = 43/311 (13%) Query: 34 RLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWG-SLAVNSR 92 RL F+ Y + + T K + + K + EY + + ++ Sbjct: 114 RLKKDRNINFLDYYQAYIDSYTKK--DLRMIKIALNRFKDFLKEYYPLYEFSIKPDLITK 171 Query: 93 ISFESYFDQI-IRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQE 151 E + + + R G+ A + + ++A+ E Sbjct: 172 EMMERFVEYLQSRSVGE-----------------------GAKSIYQRFKKVVRYAIDHE 208 Query: 152 YVAINPCLSV-ERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP--RLAFEFLLYSGLRCSD 208 + +PC V + + + +++Q + P R AF LY GLR D Sbjct: 209 VMLKDPCKGVVCKVGEQILRKDVLSMDEIQSLIQCHYDNENPNVRRAFILCLYCGLRFCD 268 Query: 209 SCRAGVQHLQ--NNIFSIKTQKTG-----TIITVELPDGFMKLLAMTPIGKETFFINNDK 261 +++ N++ + KT + + + L DG + L+ P +T N Sbjct: 269 VKDLTYKNIDYTNHLLKFEQNKTKGHSANSGVVIPLNDGLLSLIGEAPEDLDTSIFNLP- 327 Query: 262 QKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319 K +AG+NK S H R A + GA + + G + Sbjct: 328 ---TYESCCKSVKRWVKRAGINKHISWHCARHSFAVNILNNGANIKTVASLLGHSGLKHT 384 Query: 320 ETYTKGADRIR 330 E YT+ D+++ Sbjct: 385 EKYTRAVDKLK 395 >gi|317504561|ref|ZP_07962535.1| integrase [Prevotella salivae DSM 15606] gi|315664332|gb|EFV04025.1| integrase [Prevotella salivae DSM 15606] Length = 407 Score = 134 bits (336), Expect = 3e-29, Method: Composition-based stats. Identities = 59/367 (16%), Positives = 128/367 (34%), Gaps = 52/367 (14%) Query: 16 TRHGKIIYYF--RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73 ++G ++ Y + ++ + + + Y+ A + +R+ + + Sbjct: 41 DKNGNLVLYETGKMAGKPKVHIKHNRRKENLQLYLIAKPRTPVERQQNKETLELAAKIHA 100 Query: 74 LISE--------YR----KSAHWGSLAVN-----SRISFE-------SYFDQIIRKSGDF 109 + YR ++ ++ ++ + D + + + Sbjct: 101 EREQQFKESMLGYRLKKDRNVNFLDYYQAYIDSYTKKDLRMVKIALNRFKDFLKEQYPLY 160 Query: 110 DY-------RKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE 162 ++ K +H ++SR A + + ++A+ E + +PC V Sbjct: 161 EFSIKPDLITKDMMEHFVEYLQSRSVG-EGAKSIYQRFKKVVRYAIDHEVMQKDPCKGV- 218 Query: 163 RPKRKTEGIR--PWTKEDMQQFKSFWSEGSQP--RLAFEFLLYSGLRCSDSCRAGVQHLQ 218 K + +R + +++Q E P R AF LY GLR D +++ Sbjct: 219 VCKVDDQVLRKDVLSMDEIQALIQCHYENENPNVRRAFILCLYCGLRFCDVKDLTYKNVD 278 Query: 219 --NNIFSIKTQKTG-----TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI 271 N++ + KT + + + L +G + L+ P + N + S Sbjct: 279 YTNHLLKFEQNKTKGHSAHSGVIIPLNEGLLSLIGEAPEDLSSSIFNLP----SYESCSK 334 Query: 272 WFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 K +AG+NK S H R A + GA + + G + E YT+ D++ Sbjct: 335 SVKRWVKRAGINKHISWHCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYTRAVDKL 394 Query: 330 RLGIKNS 336 + NS Sbjct: 395 KEDAINS 401 >gi|90580583|ref|ZP_01236388.1| tyrosine recombinase [Vibrio angustum S14] gi|90438241|gb|EAS63427.1| tyrosine recombinase [Photobacterium angustum S14] Length = 298 Score = 134 bits (336), Expect = 3e-29, Method: Composition-based stats. Identities = 37/265 (13%), Positives = 91/265 (34%), Gaps = 23/265 (8%) Query: 85 GSLAVNSRISFESYFDQII-----RKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139 L+ N+ S+ + +++ + + + + + +S + +++ Sbjct: 19 RGLSENTLSSYRNDLTKLLRWLKQESRNVISVSVDDLQRYQQWLFDKDYKQTSRARMVSA 78 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195 +R LF++ R++ +P + PK + ++ + + + Sbjct: 79 IRRLFQYLHREKMRDDDPSAMLVTPKLPKRLPKDLSEAQVDALLEAPDVNDPIELRDKAM 138 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLAMTP----- 249 E L +GLR ++ ++++ ++ T K V + + + + Sbjct: 139 LELLYATGLRVTELVTLTMENISLRQGVVRITGKGDKERLVPMGENAVDWIEQFIETGRP 198 Query: 250 -----IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKFSATISADAG 301 + F + ++M F K A AG++ S H +R AT + G Sbjct: 199 QLLGEKSSDVLFPSRRARQMTRQTFWHRIKHYAVLAGIDADTLSPHVMRHAFATHLLNYG 258 Query: 302 ATAHELMATYGWKTVDQAETYTKGA 326 A + G + + YT A Sbjct: 259 ADLRVVQMLLGHSDLSTTQIYTHVA 283 >gi|15800830|ref|NP_286846.1| putative integrase for cryptic prophage CP-933M [Escherichia coli O157:H7 EDL933] gi|15830309|ref|NP_309082.1| integrase [Escherichia coli O157:H7 str. Sakai] gi|189404497|ref|ZP_03007478.1| site-specific recombinase, phage integrase family [Escherichia coli O157:H7 str. EC4501] gi|189404969|ref|ZP_02812411.2| site-specific recombinase, phage integrase family [Escherichia coli O157:H7 str. EC869] gi|193066773|ref|ZP_03047793.1| site-specific recombinase, phage integrase family [Escherichia coli E22] gi|194430215|ref|ZP_03062714.1| site-specific recombinase, phage integrase family [Escherichia coli B171] gi|217326229|ref|ZP_03442313.1| site-specific recombinase, phage integrase family [Escherichia coli O157:H7 str. TW14588] gi|218694447|ref|YP_002402114.1| putative integrase from prophage [Escherichia coli 55989] gi|260844435|ref|YP_003222213.1| integrase [Escherichia coli O103:H2 str. 12009] gi|260844509|ref|YP_003222287.1| integrase [Escherichia coli O103:H2 str. 12009] gi|260854263|ref|YP_003228154.1| integrase [Escherichia coli O26:H11 str. 11368] gi|261256103|ref|ZP_05948636.1| integrase [Escherichia coli O157:H7 str. FRIK966] gi|12514159|gb|AAG55457.1|AE005287_4 putative integrase for cryptic prophage CP-933M [Escherichia coli O157:H7 str. EDL933] gi|13360515|dbj|BAB34478.1| putative integrase [Escherichia coli O157:H7 str. Sakai] gi|189365242|gb|EDU83658.1| site-specific recombinase, phage integrase family [Escherichia coli O157:H7 str. EC4501] gi|189372689|gb|EDU91105.1| site-specific recombinase, phage integrase family [Escherichia coli O157:H7 str. EC869] gi|192925584|gb|EDV80258.1| site-specific recombinase, phage integrase family [Escherichia coli E22] gi|194411751|gb|EDX28074.1| site-specific recombinase, phage integrase family [Escherichia coli B171] gi|217322450|gb|EEC30874.1| site-specific recombinase, phage integrase family [Escherichia coli O157:H7 str. TW14588] gi|218351179|emb|CAU96883.1| putative integrase from prophage [Escherichia coli 55989] gi|257752912|dbj|BAI24414.1| integrase [Escherichia coli O26:H11 str. 11368] gi|257759582|dbj|BAI31079.1| integrase [Escherichia coli O103:H2 str. 12009] gi|257759656|dbj|BAI31153.1| integrase [Escherichia coli O103:H2 str. 12009] Length = 339 Score = 134 bits (336), Expect = 3e-29, Method: Composition-based stats. Identities = 59/335 (17%), Positives = 102/335 (30%), Gaps = 39/335 (11%) Query: 7 LPPFVTKERTRHGKIIYYFRKGHGR-----RIRLPYPHESTFIPAYMSALTGSTPKREYI 61 LPP V Y K G R+ + Y E Sbjct: 13 LPPRVRS------NGYSYVWKPEGSTRSIGLGRVRKTSVAKVWQNY-----------ELE 55 Query: 62 NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121 + T+ L + S + LA ++ + + ++ G + T+ +R Sbjct: 56 KAKLHNIMTVAKLWHMFMDSPAFTELAPRTQKDYRQHQKALLMVFGKVLADNVKTEQVRI 115 Query: 122 GVESRK-HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 ++ R + + A L S+ ++ W + YV NPC V + K + T E Sbjct: 116 FMDKRGLESKTQANHELASLSRVYGWGYERGYVKNNPCKGVRKFSLKARTVYI-TDEQYA 174 Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240 + Q R+A E R D Q + + I+ KTGT E Sbjct: 175 AIYA--EAIPQLRIAMEISYLCAARLGDVLELKWQDIMDKGIYIEQNKTGTKQIKEWSPR 232 Query: 241 FMKLLAMT----PIGKETFFINNDKQKMNATQFSIWFKAKATKA----GVN--KSAHGVR 290 + + E K+ A + W+ A GV + H + Sbjct: 233 LRTAIQLARNVSSCTCEYVINTTKGGKVIAKTLNNWWNQAKRAAEQKVGVPFGCNFHDI- 291 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 K + ++ + G KT +Q Y + Sbjct: 292 KAKGISDYE--GSSRDKQIFSGHKTENQVLIYDRK 324 >gi|302342643|ref|YP_003807172.1| tyrosine recombinase XerD [Desulfarculus baarsii DSM 2075] gi|301639256|gb|ADK84578.1| tyrosine recombinase XerD [Desulfarculus baarsii DSM 2075] Length = 311 Score = 134 bits (336), Expect = 3e-29, Method: Composition-based stats. Identities = 54/295 (18%), Positives = 104/295 (35%), Gaps = 27/295 (9%) Query: 55 TPKREYINSPRKKPTTLKWLISEYRKS-AHWGSLAVNSRISFESYFDQII---RKSGDFD 110 + R P P L ++ Y A LA N+ ++ I +G Sbjct: 2 SQARPSSQPPAALP--LHGMVDVYLDHLAGERGLARNTLAAYADDLADICGFLHDNGVQG 59 Query: 111 YRKITTKHIRSGVESRKHTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167 + ++ H+ + + +A + L++ R L + +R+E ++ +P ++ PK+ Sbjct: 60 WEQVDELHMVAYLAHAAKEGLAANSRARRLSAARGLVGYLLRREKLSADPLATLRGPKKT 119 Query: 168 TEGIRPWTKEDM----QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS 223 ++E+M + + G + R E + +GLR S+ GV +Q I Sbjct: 120 AGLPHFLSQEEMLRLLETPAADSDLGRRDRAMLEAMYGAGLRVSEVIDLGVGQIQFQIGC 179 Query: 224 IKTQKTG-TIITVELPDGF-----------MKLLAMTPIGKETFFINNDKQKMNATQFSI 271 + + G V L + L +T F+N K++ Sbjct: 180 LLVRGKGAKERLVPLHQVAIQRLEDYLRGPRQNLLRGQKASDTVFLNARGGKLSRMGVWK 239 Query: 272 WFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 AG++ S H +R AT + GA + G + + YT Sbjct: 240 ILAKHVAAAGIDHHVSPHTLRHTFATHLLEGGADLRSVQLMLGHADIGTTQIYTH 294 >gi|228473046|ref|ZP_04057803.1| tyrosine recombinase XerD [Capnocytophaga gingivalis ATCC 33624] gi|228275628|gb|EEK14405.1| tyrosine recombinase XerD [Capnocytophaga gingivalis ATCC 33624] Length = 301 Score = 134 bits (336), Expect = 3e-29, Method: Composition-based stats. Identities = 48/264 (18%), Positives = 94/264 (35%), Gaps = 24/264 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKSG----DFDYRKITTKHIRSGV--ESRKHTPSSAIQFLT 138 ++ NS S+ +++ + I+ + +R V +S++ S + ++ Sbjct: 21 RGMSPNSVQSYLFDLEKLSDYINLHQIEERPENISAETLREFVYQQSKELQARSQSRLIS 80 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS----FWSEGSQPRL 194 S++ FK+ + + Y P ++ PK + + E++ + SEG + R Sbjct: 81 SLKSFFKYLLLENYREDFPMEYIDTPKYGMKLPDTLSVEEIDALIAGIDLSTSEGHRNRA 140 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLL-------- 245 E L GLR S+ + L I+ K V + + K + Sbjct: 141 IIETLYGCGLRVSELVNLHLSDLFFEEGFIRVLGKGDKQRLVPISEYTQKQINNYIQHQR 200 Query: 246 ---AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300 + F+N +++ K A G+ K S H R AT + Sbjct: 201 KEVPQVKEFTDIVFLNRRGKQLTRAMIFTIIKQTAAAIGLTKTISPHTFRHSFATHLLEN 260 Query: 301 GATAHELMATYGWKTVDQAETYTK 324 GA + G +++ E YT Sbjct: 261 GANLRAIQLMLGHESITTTEIYTH 284 >gi|299538027|ref|ZP_07051313.1| hypothetical protein BFZC1_18515 [Lysinibacillus fusiformis ZC1] gi|298726609|gb|EFI67198.1| hypothetical protein BFZC1_18515 [Lysinibacillus fusiformis ZC1] Length = 278 Score = 134 bits (336), Expect = 3e-29, Method: Composition-based stats. Identities = 39/251 (15%), Positives = 90/251 (35%), Gaps = 11/251 (4%) Query: 90 NSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV---ESRKHTPSSAIQFLTSMRVLFKW 146 + + ++ ++I +++ITT+ IR + E + P++ + L +R+ +K+ Sbjct: 21 KTSVLYQRTVSEMI-TYCSIPFQEITTRDIRKWLCHLEEKGRAPATISKKLFGLRLFYKY 79 Query: 147 AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRC 206 + ++ +A NP ++ P+ + + + R E L +G+R Sbjct: 80 CLEEQLIAHNPVKAIRLPEINDRMPHYLLPNQLLLLQRMTETNKRERAIVEVLYTTGVRL 139 Query: 207 SDSCRAGVQHLQ--NNIFSIKTQKTGTIITV----ELPDGFMKLLAMTPIGKETFFINND 260 S+ ++ + + I+ K V + L F+N Sbjct: 140 SELVAIQLKDIDWSERLIHIRKGKGKKARIVLFTRMCAEYLQAYLQERDSSCPYLFLNMR 199 Query: 261 K-QKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319 + + F + + G+ S H +R A A G + + G + Q Sbjct: 200 GTKPLGVRGIQHKFSDYSEELGIPFSPHTLRHTFAAHLAMKGMSLDCIQTLLGHEDPHQT 259 Query: 320 ETYTKGADRIR 330 + Y + + R Sbjct: 260 QIYARLYNHAR 270 >gi|300703191|ref|YP_003744793.1| site-specific tyrosine recombinase [Ralstonia solanacearum CFBP2957] gi|299070854|emb|CBJ42155.1| site-specific tyrosine recombinase [Ralstonia solanacearum CFBP2957] Length = 308 Score = 134 bits (336), Expect = 3e-29, Method: Composition-based stats. Identities = 48/268 (17%), Positives = 85/268 (31%), Gaps = 23/268 (8%) Query: 86 SLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESR--KHTPSSAIQFLTSMR 141 LA N+ ++ + + + +R S+A + T + Sbjct: 31 GLARNTLDAYRRDLTLYAQWLAGRGKAIDQTEDDDLADYFAARHEASRASTANRRRTVFK 90 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAFE 197 F+WA+R+ V +P + K+ + ++ ++ + G + R E Sbjct: 91 RFFQWALREHVVGADPSRLLSTAKQPPRIPKTLSEAQVEALIAAPDVDTPLGLRDRAMIE 150 Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKT--QKTGTIITVELPDGFMKLLAMTPIGKET- 254 + SGLR S+ + N ++ K G V L T Sbjct: 151 LMYASGLRVSEIVALKSVEVGLNEGVVRVIGGKGGKDRLVPFGAEAGDWLRRYLRDGRTA 210 Query: 255 ---------FFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGAT 303 F+ M F K A +A ++ S H +R AT + GA Sbjct: 211 LLGKRTADALFVTARGDGMTRQAFWHLIKRYALRADIHAPLSPHTLRHAFATHLLNHGAD 270 Query: 304 AHELMATYGWKTVDQAETYTKGADRIRL 331 + G + + YT A R RL Sbjct: 271 LRVVQMLLGHADISTTQIYTHVA-RERL 297 >gi|330818124|ref|YP_004361829.1| Tyrosine recombinase XerD [Burkholderia gladioli BSR3] gi|327370517|gb|AEA61873.1| Tyrosine recombinase XerD [Burkholderia gladioli BSR3] Length = 392 Score = 134 bits (336), Expect = 3e-29, Method: Composition-based stats. Identities = 46/268 (17%), Positives = 96/268 (35%), Gaps = 22/268 (8%) Query: 85 GSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIRSGVESRKH-TPSSAIQFLTSM 140 L+ N+ ++ Q + ++ + ++ + + + +R +S+ + L+ Sbjct: 115 HGLSKNTLDAYRRDLTLFAQWLAQTHEASLDVVSEPILTAYIAARSDGKATSSNRRLSVF 174 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF----KSFWSEGSQPRLAF 196 R + WA+R+ A +P L V K+ ++ ++ + + G + R Sbjct: 175 RRYYGWALREHRAAADPTLRVLSAKQAPRFPSTLSEGQVEALLGAPEVETALGLRDRTML 234 Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------ELPDGFMKLLAM 247 E + SGLR S+ + N ++ G+ + + + Sbjct: 235 ELMYASGLRVSELVTLKTVEVGLNDGVVRVMGKGSKERLVPFGEVAHGWIERYLREARPA 294 Query: 248 T--PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGAT 303 + F+ + M QF K A +A + + S H +R AT + GA Sbjct: 295 LLGARASDALFVTARGEGMTRQQFWNIIKRHALRAEIRAHLSPHTLRHAFATHLLNHGAD 354 Query: 304 AHELMATYGWKTVDQAETYTKGADRIRL 331 + G + + YT A R RL Sbjct: 355 LRVVQMLLGHSDISTTQIYTHVA-RERL 381 >gi|194440057|ref|ZP_03072113.1| site-specific recombinase, phage integrase family [Escherichia coli 101-1] gi|194421021|gb|EDX37052.1| site-specific recombinase, phage integrase family [Escherichia coli 101-1] Length = 339 Score = 134 bits (336), Expect = 3e-29, Method: Composition-based stats. Identities = 60/335 (17%), Positives = 103/335 (30%), Gaps = 39/335 (11%) Query: 7 LPPFVTKERTRHGKIIYYFRKGHGR-----RIRLPYPHESTFIPAYMSALTGSTPKREYI 61 LPP V Y K G RL + Y E Sbjct: 13 LPPRVRS------NGYSYVWKPEGSTRTIGLGRLRETSVAKVWQNY-----------ELE 55 Query: 62 NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121 + T+ L + S + LA ++ + + ++ G + + +R Sbjct: 56 KAKLHNIMTVAKLWHMFMDSPAFTELAPRTQKDYRQHQRALLAVFGKVLADNVKIEQVRI 115 Query: 122 GVESRK-HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 ++ R + + A L S+ ++ W + YV NPC V + K + T E Sbjct: 116 FMDKRGLESKTQANHELASLSRVYGWGYERGYVKNNPCKGVRKFTLKARTVYI-TDEQYA 174 Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240 + Q R+A E R D Q + + I+ KTGT E Sbjct: 175 AIYA--EAIPQLRIAMEISYLCAARLGDVLELKWQDIMDKGIYIEQNKTGTKQIKEWSPR 232 Query: 241 FMKLLAMT----PIGKETFFINNDKQKMNATQFSIWF----KAKATKAGVN--KSAHGVR 290 + + E K+ A + W+ +A KA V + H + Sbjct: 233 LRTAIQLARNVSSGTCEYVINTTKGGKVIAKTLNNWWNQAKRAAEQKADVPFGCNFHDI- 291 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 K + ++ + G KT +Q Y + Sbjct: 292 KAKGISDYE--GSSRDKQIFSGHKTENQVLIYDRK 324 >gi|319792815|ref|YP_004154455.1| tyrosine recombinase xerd [Variovorax paradoxus EPS] gi|315595278|gb|ADU36344.1| tyrosine recombinase XerD [Variovorax paradoxus EPS] Length = 303 Score = 134 bits (336), Expect = 3e-29, Method: Composition-based stats. Identities = 48/270 (17%), Positives = 95/270 (35%), Gaps = 25/270 (9%) Query: 86 SLAVNSRISFESYFDQIIRKSGDFD-------YRKITTKHIRSGVESRKHTPSSAIQFLT 138 L+ N+ ++ + G ++ + S K +SA + LT Sbjct: 24 GLSKNTLAAYRRDLALFSQWLGKQRSGIALDTAQESDVQAYMGVRLSTKGKATSANRRLT 83 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRL 194 + ++WA+R+ + +P + + ++ I+ +++ + + G + R Sbjct: 84 VFKRYYRWALRERRITADPTIRLAPARQMPRAIKTLSEKQVDDLLAAPDVETPLGLRDRA 143 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------ELPDGFMKLL 245 E + SGLR S+ V + N ++ G + + + Sbjct: 144 MLEVMYASGLRVSELVALKVIDMSLNDGVLRVLGKGNKERLVPFGGEARRWIERYLEESR 203 Query: 246 AMTPIGKET--FFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAG 301 + G++T F+ M F I K +A AG++ S H +R AT + G Sbjct: 204 PVILDGQQTPDLFVTARGAGMTRVMFWIIVKKQAAAAGIHVPLSPHTLRHAFATHLLNHG 263 Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRL 331 + G + YT A R RL Sbjct: 264 VDLRAVQLLLGHADISTTTIYTHVA-RERL 292 >gi|307591252|ref|YP_003900461.1| integrase family protein [Cyanothece sp. PCC 7822] gi|306986817|gb|ADN18692.1| integrase family protein [Cyanothece sp. PCC 7822] Length = 275 Score = 134 bits (336), Expect = 3e-29, Method: Composition-based stats. Identities = 48/243 (19%), Positives = 99/243 (40%), Gaps = 10/243 (4%) Query: 88 AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT---PSSAIQFLTSMRVLF 144 + + ++ + Q I + +IT + V T P+ A + L ++ LF Sbjct: 24 SKTTVKTYVCHVKQFIDFM-NQPLAEITLDDLVLWVNRLNLTYTPPTVANKIL-CIKSLF 81 Query: 145 KWAVRQEYVAINPCLSVERPK-RKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSG 203 + V+ Y++ N ++ PK R + + D+++ + G + R+ + +G Sbjct: 82 SFCVKVGYLSFNIGALIKPPKTRDKRAEKILDQGDVKRLIEQATPG-RDRVLLCLIYTTG 140 Query: 204 LRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQK 263 LR S++ L+ N ++ K + + +PD ++ L P E F + + Sbjct: 141 LRVSEAVNLTWSDLKGNKLAV-YGKGSKLRFIIVPDWLLEQLQTLPKISEFIFATSTGKP 199 Query: 264 MNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321 ++ K A KAG++ SAH +R A+ + + G L + G ++ E Sbjct: 200 IDRIFTHRMIKKCAEKAGIDPKTSAHWLRHSHASHAINNGCNVRLLQESLGHSKLETTEK 259 Query: 322 YTK 324 Y Sbjct: 260 YLH 262 >gi|119357566|ref|YP_912210.1| tyrosine recombinase XerD [Chlorobium phaeobacteroides DSM 266] gi|119354915|gb|ABL65786.1| tyrosine recombinase XerD [Chlorobium phaeobacteroides DSM 266] Length = 304 Score = 134 bits (336), Expect = 3e-29, Method: Composition-based stats. Identities = 45/265 (16%), Positives = 100/265 (37%), Gaps = 25/265 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESRKHT---PSSAIQFLTS 139 + + N+R+S+ + + + + +T IR + T P++ + +++ Sbjct: 23 RNFSQNTRVSYRNDLHRYLLTVQETMKPITSVTASDIRQFISELHETGLEPATIARNISA 82 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQFKSFWSEG---SQP 192 +R LF++ V + + NP ++ +PK+ T E+ ++ G + Sbjct: 83 IRSLFRFLVIEHLLEANPAENIHQPKQAKNLPSVLTIEETLRLLEAPILQHPPGKYLLRD 142 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLAMTPI- 250 + EFL +G+R S+ Q L ++ K V + + + Sbjct: 143 KAILEFLYATGVRVSELTELQQQSLFLEAGFVRILGKGSKERLVPIGLSAINSINRYRTE 202 Query: 251 ---------GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299 ++ F+N +K++ + A+ +G+ K S H +R AT + Sbjct: 203 LRIGLINRNSQDYVFLNARGKKLSRMAIYSMVQEYASLSGIEKKISPHTLRHTFATHLLE 262 Query: 300 AGATAHELMATYGWKTVDQAETYTK 324 GA + G ++ + YT Sbjct: 263 GGADLRAVQEMLGHSSILATQLYTH 287 >gi|193070069|ref|ZP_03051016.1| site-specific recombinase, phage integrase family [Escherichia coli E110019] gi|192956666|gb|EDV87122.1| site-specific recombinase, phage integrase family [Escherichia coli E110019] Length = 339 Score = 134 bits (336), Expect = 3e-29, Method: Composition-based stats. Identities = 59/335 (17%), Positives = 102/335 (30%), Gaps = 39/335 (11%) Query: 7 LPPFVTKERTRHGKIIYYFRKGHGR-----RIRLPYPHESTFIPAYMSALTGSTPKREYI 61 LPP V Y K G R+ + Y E Sbjct: 13 LPPRVRS------NGYSYVWKPEGSTRTIGLGRVRKTSVAKVWQNY-----------ELE 55 Query: 62 NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121 + T+ L + S + LA ++ + + ++ G + T+ +R Sbjct: 56 KAKLHNIMTVAKLWHMFMDSPAFTELAPRTQKDYRQHQKALLMVFGKVLADNVKTEQVRI 115 Query: 122 GVESRK-HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 ++ R + + A L S+ ++ W + YV NPC V + K + T E Sbjct: 116 FMDKRGLESKTQANHELASLSRVYGWGYERGYVKNNPCKGVRKFSLKARTVYI-TDEQYA 174 Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240 + Q R+A E R D Q + + I+ KTGT E Sbjct: 175 AIYA--EAIPQLRIAMEISYLCAARLGDVLELKWQDIMDKGIYIEQNKTGTKQIKEWSPR 232 Query: 241 FMKLLAMT----PIGKETFFINNDKQKMNATQFSIWFKAKATKA----GVN--KSAHGVR 290 + + E K+ A + W+ A GV + H + Sbjct: 233 LRTAIQLARNVSSCTCEYVINTTKGGKVIAKTLNNWWNQAKRAAEQKVGVPFGCNFHDI- 291 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 K + ++ + G KT +Q Y + Sbjct: 292 KAKGISDYE--GSSRDKQIFSGHKTENQVLIYDRK 324 >gi|319937629|ref|ZP_08012033.1| tyrosine recombinase xerC [Coprobacillus sp. 29_1] gi|319807271|gb|EFW03883.1| tyrosine recombinase xerC [Coprobacillus sp. 29_1] Length = 301 Score = 133 bits (335), Expect = 3e-29, Method: Composition-based stats. Identities = 43/284 (15%), Positives = 90/284 (31%), Gaps = 26/284 (9%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD------FDYRKITTKHIRSGV 123 + EY + + + + ++ + I D R + + + Sbjct: 4 FDKYVQEYLDVLKYQKNYSSLTIDGYKREIEHFIVYLNKENICDFKDVRYPFLRGYLAQL 63 Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM---- 179 S +P + ++S+R L+++ Q Y+ NP L ++ K+ ++M Sbjct: 64 HSENLSPKTINHKMSSLRGLYRYLQTQGYIDDNPFLLIDSLKQPLRNPDFLYIDEMMDLL 123 Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELP 238 + G + + E + SGLRCS+ + + + K V Sbjct: 124 DSIDTQTLLGRRNKALLELMYASGLRCSEVVELTLSQIDFERQLLLIHGKGNKDRYVPFH 183 Query: 239 D------------GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK--AGVNK 284 D +L+A+ + + F+N + KM + A Sbjct: 184 DYAADWLKTYIEEDRPELMAVKHLEHQFVFVNKNGAKMTNRGIEDIVNRVTQRYDATKKV 243 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 H R AT + G + G + + YT ++ Sbjct: 244 HPHTFRHSFATHLLEQGVDIRVVQELLGHSNLSTTQIYTHVTNQ 287 >gi|212692864|ref|ZP_03300992.1| hypothetical protein BACDOR_02364 [Bacteroides dorei DSM 17855] gi|212664653|gb|EEB25225.1| hypothetical protein BACDOR_02364 [Bacteroides dorei DSM 17855] Length = 407 Score = 133 bits (335), Expect = 3e-29, Method: Composition-based stats. Identities = 60/352 (17%), Positives = 116/352 (32%), Gaps = 31/352 (8%) Query: 8 PPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYI----NS 63 P F K R + Y R + + + Sbjct: 58 PKFAVKHNRRKENLSLYL--IDKPRTPAERQQNKETLELATKIRAEREQEFKESMLGYRL 115 Query: 64 PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG----DFDYRKITTKHI 119 + + Y S + + +I+ + D + + IT + + Sbjct: 116 KKDRTVNFLDYFQAYINSYTKKDIRMV-QIALSRFKDFLKEQYPMNEFSIKPELITKEMM 174 Query: 120 RSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR--PWT 175 V + A + + ++A+ + + +PC SV K ++ +R + Sbjct: 175 EQFVAYLQSRSVGEGAKSIYQRFKKVIRYAIDHDVMLKDPCKSVT-CKVDSQMLRKDVLS 233 Query: 176 KEDMQQFKSFWSEGSQP--RLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTG- 230 E++Q+ + + P R AF F LYSGLR D +++ N + + KT Sbjct: 234 PEEIQKLAACHYDNENPNVRRAFIFCLYSGLRFCDVKDLTYKNVDYANRLLKFEQSKTKG 293 Query: 231 ----TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-- 284 + + + L DG + ++ P K + K +AG++K Sbjct: 294 HSASSGVVIPLNDGLLSIIGEAPADKNCLIFDLP----TYESCCKSVKRWVKRAGIDKHI 349 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336 S H R A + GA + + G + E YT+ D+++ NS Sbjct: 350 SWHCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYTRAVDKLKEEAINS 401 >gi|78049232|ref|YP_365407.1| site-specific tyrosine recombinase XerD [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78037662|emb|CAJ25407.1| integrase-recombinase XerD [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 323 Score = 133 bits (335), Expect = 3e-29, Method: Composition-based stats. Identities = 44/273 (16%), Positives = 92/273 (33%), Gaps = 29/273 (10%) Query: 85 GSLAVNSRISFESYFDQIIR-----KSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139 +A + S+ + + R G + ++P S + L++ Sbjct: 38 QGVARQTLESYRRDLEGLARWRDGAHGGLLGIDRAALFDYLRWRTQANYSPRSTARLLST 97 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195 +R + +R + +P ++ P+ + T+ ++ + G + R Sbjct: 98 LRAFYGLCLRDGVRSDDPTTLIDPPQLPRSLPKALTESQIEALLAAPDVDTPAGLRNRAM 157 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-ITVELPDG--------FMKLLA 246 E + +GLR S+ + ++ G+ V L + + Sbjct: 158 LELMYAAGLRVSELVNLPAVGVNLRQGVLRVTGKGSKDRLVPLGEESQHWLERYLREARP 217 Query: 247 MTPIGKET--------FFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSAT 295 + K FI+ ++ ++ QF K A AG++ S HG+R AT Sbjct: 218 LLAANKPVAAVDGQVPLFIDAARRPLSRQQFWALVKRYAAVAGIDPDTVSPHGLRHSFAT 277 Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADR 328 + GA L G ++ + YT A + Sbjct: 278 HLLNHGADLRALQMLLGHSSLSTTQIYTLVARQ 310 >gi|83749114|ref|ZP_00946119.1| Integrase/recombinase (XerD/RipX family) [Ralstonia solanacearum UW551] gi|207721732|ref|YP_002252171.1| integrase/recombinase protein [Ralstonia solanacearum MolK2] gi|207742496|ref|YP_002258888.1| integrase/recombinase protein [Ralstonia solanacearum IPO1609] gi|83724235|gb|EAP71408.1| Integrase/recombinase (XerD/RipX family) [Ralstonia solanacearum UW551] gi|206586895|emb|CAQ17480.1| integrase/recombinase protein [Ralstonia solanacearum MolK2] gi|206593887|emb|CAQ60814.1| integrase/recombinase protein [Ralstonia solanacearum IPO1609] Length = 308 Score = 133 bits (335), Expect = 3e-29, Method: Composition-based stats. Identities = 48/268 (17%), Positives = 87/268 (32%), Gaps = 23/268 (8%) Query: 86 SLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESR--KHTPSSAIQFLTSMR 141 LA N+ ++ + + + +R + S+A + T + Sbjct: 31 GLARNTLDAYRRDLTLYAQWLAGRGKAIDQTEDDDLADYFAARHEESRASTANRRRTVFK 90 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAFE 197 F+WA+R+ V +P + K+ + ++ ++ + G + R E Sbjct: 91 RFFQWALREHVVGADPSRLLSTAKQPPRIPKTLSEAQVEALIAAPDVDTPLGLRDRAMIE 150 Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKT--QKTGTIITVELPDGFMKLLAMTPIGKET- 254 + SGLR S+ + N ++ K G V L T Sbjct: 151 LMYASGLRVSEIVALKTVEVGLNEGVVRVIGGKGGKDRLVPFGAEAGDWLRRYLRDGRTA 210 Query: 255 ---------FFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGAT 303 F+ + M F K A +A ++ S H +R AT + GA Sbjct: 211 LLGKRTADALFVTARGEGMTRQAFWHLIKRYALRADIHAPLSPHTLRHAFATHLLNHGAD 270 Query: 304 AHELMATYGWKTVDQAETYTKGADRIRL 331 + G + + YT A R RL Sbjct: 271 LRVVQMLLGHADISTTQIYTHVA-RERL 297 >gi|332042840|gb|EGI79039.1| integrase family protein [Lacinutrix algicola 5H-3-7-4] Length = 298 Score = 133 bits (335), Expect = 3e-29, Method: Composition-based stats. Identities = 47/262 (17%), Positives = 94/262 (35%), Gaps = 24/262 (9%) Query: 85 GSLAVNSRISF----ESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP--SSAIQFLT 138 L+ NS ++ + + + I + I+ + + T S + ++ Sbjct: 18 RGLSNNSIDNYSFDVKKLIKHLEENNIVSSPVNIQKQTIQEFIYAISKTINSRSQSRLIS 77 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRL 194 ++ F + V ++Y NP +++ PK + +++++ S +G + R Sbjct: 78 GLKGFFNYLVFEDYRFDNPLDTIDAPKIGRKLPDTLSEQEINNLISAVDLSTPQGERNRC 137 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPD-----------GFM 242 E L GLR S+ + L + IK T K V + Sbjct: 138 ILELLYGCGLRVSELTHLKISDLFFDEGYIKVTGKGDKQRFVPIVPATQKFINIYRNEVR 197 Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300 + + K+T F+N +++ K+ A K + K S H R AT + Sbjct: 198 NHMVIPSEYKDTLFLNRRGKQLTRAMIFTIVKSLAIKINLGKTISPHTFRHSFATHLLEN 257 Query: 301 GATAHELMATYGWKTVDQAETY 322 GA + G +++ E Y Sbjct: 258 GADLRAIQLMLGHESITTTEIY 279 >gi|189347316|ref|YP_001943845.1| tyrosine recombinase XerD [Chlorobium limicola DSM 245] gi|189341463|gb|ACD90866.1| tyrosine recombinase XerD [Chlorobium limicola DSM 245] Length = 306 Score = 133 bits (335), Expect = 3e-29, Method: Composition-based stats. Identities = 46/265 (17%), Positives = 102/265 (38%), Gaps = 25/265 (9%) Query: 85 GSLAVNSRISFESYFDQ--IIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQF---LTS 139 + +VN+R S+ + + + + + + T IR + T A +++ Sbjct: 25 RNFSVNTRESYRNDLKRYLLFMQDENKAIGAVETADIRKFISELHATGLEASTLGRNISA 84 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----QQFKSFWSEG---SQP 192 +R L K+ + + + NP ++++PK + ++ + G + Sbjct: 85 IRSLHKFLLIERTLETNPAETIQQPKLAKNLPDVLSLSEVMSLLEAPLQQNPPGKFLLRD 144 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLL------ 245 + EFL +G+R S+ QHL + ++ K V + + ++ + Sbjct: 145 KAILEFLYAAGVRVSELTALQQQHLYFDAGFVRILGKGSKERLVPVGNAAIEAITQYQNQ 204 Query: 246 ----AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299 +T ++ F+N +K++ + + A AG+ K S H +R AT + Sbjct: 205 LRIGMVTKESEDCLFLNARGKKLSRMAVYLMVREYAALAGIRKNISPHTLRHTFATHLLE 264 Query: 300 AGATAHELMATYGWKTVDQAETYTK 324 GA + G ++ + YT Sbjct: 265 GGADLRAVQEMLGHSSILATQIYTH 289 >gi|54307771|ref|YP_128791.1| site-specific tyrosine recombinase XerD [Photobacterium profundum SS9] gi|46912194|emb|CAG18989.1| putative integrase/recombinase XerD [Photobacterium profundum SS9] Length = 292 Score = 133 bits (335), Expect = 3e-29, Method: Composition-based stats. Identities = 41/265 (15%), Positives = 96/265 (36%), Gaps = 23/265 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITT-----KHIRSGVESRKHTPSSAIQFLTS 139 L+ N+ +S+ + ++ R S + YR +T + + + +S + +++ Sbjct: 13 RGLSENTLMSYRNDLTKLRRWSDEKSYRLVTLSSDDLQRYQQWLFDADFKQTSRARMVSA 72 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----QQFKSFWSEGSQPRLA 195 +R L+++ R++ +P + P+ + T+E + + + + Sbjct: 73 IRRLYQYLYREKVRDDDPSSMMISPRLPKRLPKDLTEEQVGALLDAPDTNNPIELRDKAM 132 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGKET 254 E L +GLR ++ +++ ++ K G V + + + + Sbjct: 133 LELLYATGLRVTELVSLTMENTNLRQGVVRVLGKGGKERLVPMGENAIDWIEEFIDSGRP 192 Query: 255 FFI----------NNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAG 301 + + ++M F K A AG++ S H +R AT + G Sbjct: 193 LLLGEKSSDVLFPSKRARQMTRQTFWHRIKYYAVIAGIDTDTLSPHVMRHAFATHLLNHG 252 Query: 302 ATAHELMATYGWKTVDQAETYTKGA 326 A + G + + YT A Sbjct: 253 ADLRVVQMLLGHSDLSTTQIYTHVA 277 >gi|303245447|ref|ZP_07331731.1| tyrosine recombinase XerD [Desulfovibrio fructosovorans JJ] gi|302493296|gb|EFL53158.1| tyrosine recombinase XerD [Desulfovibrio fructosovorans JJ] Length = 307 Score = 133 bits (335), Expect = 3e-29, Method: Composition-based stats. Identities = 46/269 (17%), Positives = 93/269 (34%), Gaps = 20/269 (7%) Query: 85 GSLAVNSRISFESYFDQII----RKSGDFDYRKITTKHIRSG-VESRKHTPSSAIQFLTS 139 LA +S ++ + + +G + T + + SR S + L++ Sbjct: 27 KGLAEHSIKAYSTDITDFLIFLNDHAGSLETVTDDTLFLYLMHLRSRGLASRSLARHLSA 86 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK----SFWSEGSQPRLA 195 +R F +A + ++ +P +E PK +++D+ + + G + R Sbjct: 87 LRGFFAYAAGEGWLPESPAALIENPKLPRLLPDVLSRDDVARLLDAPDTATPLGYRDRTM 146 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLA-------- 246 E L +GLR S+ + ++ K + + + L+ Sbjct: 147 LELLYAAGLRVSELIGLALTDFDAQAGLLRVFGKGSKERLIPIHALAQEFLSTYIQTIRG 206 Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATA 304 ++ F+N + ++ K A AG+ + S H +R AT D GA Sbjct: 207 AFHPKEQFVFLNRSGRGLSRQAVWKGIKRHALVAGISLHISPHSLRHSFATHLLDGGADL 266 Query: 305 HELMATYGWKTVDQAETYTKGADRIRLGI 333 + G + E YT L + Sbjct: 267 RTVQTLLGHADISATEIYTHVQAERLLAV 295 >gi|225025686|ref|ZP_03714878.1| hypothetical protein EIKCOROL_02588 [Eikenella corrodens ATCC 23834] gi|224941579|gb|EEG22788.1| hypothetical protein EIKCOROL_02588 [Eikenella corrodens ATCC 23834] Length = 344 Score = 133 bits (335), Expect = 3e-29, Method: Composition-based stats. Identities = 64/334 (19%), Positives = 123/334 (36%), Gaps = 32/334 (9%) Query: 11 VTKERTRH-GK--IIYYFR-KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66 + + RTR GK + YY+ + GRR +P + Y++A+ K E P+ Sbjct: 16 LARRRTRKNGKTTVYYYYDGREDGRRKEIPLGTD------YIAAVQ-EWSKLEAAKLPKS 68 Query: 67 KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG---DFDYRKITTKHIRSGV 123 T Y ++ + N+ S + ++ + G +I H+R + Sbjct: 69 ARVTFPVAAERYLQNII-SHRSRNTISSANNAVRKLSKFFGGENPAPLDEIEPAHVRRYL 127 Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAI-NPCLSVERPKRKTEGIRPWTKEDMQQF 182 + RK TP A + + +F +A Q + + NPC +V++ +K + + + Sbjct: 128 DWRKDTPGGANNEIGYLSAIFNYAREQGWTSKENPCRNVKKHSKKRREVYI----EDYLY 183 Query: 183 KSFWSEGSQP-RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241 ++ + SQ R + +G R D H+ I I QKTG + E+ Sbjct: 184 QAVYQAASQQMRDLMDIAYITGQRPVDIVGIHSSHIHEGILHISQQKTGAKLRFEISGKL 243 Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWF-------KAKATKAGVNKSA---HGVRK 291 +++ F+N+ + ++ S F + + SA +R Sbjct: 244 KEIIDRIHQDNGYLFLNSHGKPLSRAALSRQFLELRKTVMQQRPELAEELSAFQFRDLRA 303 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKG 325 +AT A A G + + Y + Sbjct: 304 KAATDIYLA-ADTRSASDQLGHASEQMTKIYIRR 336 >gi|291536378|emb|CBL09490.1| tyrosine recombinase XerD subunit [Roseburia intestinalis M50/1] gi|291538752|emb|CBL11863.1| tyrosine recombinase XerD subunit [Roseburia intestinalis XB6B4] Length = 294 Score = 133 bits (335), Expect = 3e-29, Method: Composition-based stats. Identities = 43/269 (15%), Positives = 88/269 (32%), Gaps = 23/269 (8%) Query: 85 GSLAVNSRISFESYFDQIIRK------SGDFDYRKITTKHIRSGVESRKHTPSSAIQFLT 138 + N+ +S+E ++ G + +E P++ + + Sbjct: 16 KQTSKNTEVSYERDLRKMNEYLEAQNVYGVSAVTETNLNAYVMFLEREGRKPATVSRSIA 75 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----QQFKSFWSEGSQPRL 194 SM+ F + ++ + +P ++ PK + R T E++ +Q + + + Sbjct: 76 SMKAFFHFLEKERRIESDPAWRLKAPKIEKTMPRILTTEEVTLLLEQPSGNTPKELRDKA 135 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM------- 247 E L +G+R S+ V L + + + + + L Sbjct: 136 MLELLYATGIRVSELISLKVSDLNLQMEYVICTDIHKERIIPFGNVAREALTRYMQDGRD 195 Query: 248 ---TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGA 302 + F N M+ F K KAG+ + H +R A GA Sbjct: 196 HLISQADCPWLFTNCTGGAMSRQGFWKLIKFYGKKAGIESEITPHTLRHSFAAHLISNGA 255 Query: 303 TAHELMATYGWKTVDQAETYTK-GADRIR 330 + G + + Y++ G RIR Sbjct: 256 DLKSVQEMLGHSDISTTQIYSQMGQGRIR 284 >gi|82777635|ref|YP_403984.1| integrase [Shigella dysenteriae Sd197] gi|81241783|gb|ABB62493.1| integrase [Shigella dysenteriae Sd197] Length = 351 Score = 133 bits (335), Expect = 3e-29, Method: Composition-based stats. Identities = 62/337 (18%), Positives = 114/337 (33%), Gaps = 30/337 (8%) Query: 10 FVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69 + ++ R GK F G RRI + + I A + L+ S + Sbjct: 18 YCYRD-PRTGKE---FGLGRDRRIAI-----TEAIQANIELLSDSGRESLIDRIKGADSI 68 Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--K 127 TL + Y + + + + S I RK D I+TK + + + + + Sbjct: 69 TLHAWLDRYETILSERGIRPKTLLDYASKIRAIRRKLPDKPLTDISTKEVAAMLNTYVAE 128 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 +SA +++ +F+ A+ + +VA NP + K + R E ++ + + Sbjct: 129 GKAASAKLIRSTLVDVFREAIAEGHVATNPVTATRTAKSEVRRSRLTANEYVEIYHAAEP 188 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP--------- 238 RLA + + +G R D CR + +N I+ KTG + + L Sbjct: 189 LPIWLRLAMDLAVITGQRVGDLCRMKWSDINDNHLHIEQGKTGAKLAIPLTLTIDALNIS 248 Query: 239 --DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-----NKSAHGVRK 291 D K ET + ++ S +F +G+ + H +R Sbjct: 249 LVDTLQK--CREASSSETIIASKHHDPLSPKTVSKYFTKARNASGLSFDGDPPTFHELR- 305 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 + G K+ A Y R Sbjct: 306 SLSARLYRNQIGDKFAQRLLGHKSDSMAARYRDSRGR 342 >gi|168823065|ref|ZP_02835065.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|204927994|ref|ZP_03219194.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|204322316|gb|EDZ07513.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205340622|gb|EDZ27386.1| tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|320087473|emb|CBY97238.1| Tyrosine recombinase xerD [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 298 Score = 133 bits (335), Expect = 4e-29, Method: Composition-based stats. Identities = 42/265 (15%), Positives = 89/265 (33%), Gaps = 23/265 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESR---KHTPSSAIQFLTS 139 +LA N+ ++ ++ +++ + R + +S+ + L++ Sbjct: 19 RNLAENTLSAYRRDLSMVVAWLHHRGKTLATAQADDLQTLLAERVEGGYKATSSARLLSA 78 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195 MR F+ R++ +P + PK + ++ +++ + + Sbjct: 79 MRRFFQHLYREKCREDDPSAQLASPKLPQRLPKDLSEAQVERLLQAPLIDQPLELRDKAM 138 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGKET 254 E L +GLR S+ + + ++ K V L + + L Sbjct: 139 LEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVYWLETYLEHGRP 198 Query: 255 FFIN----------NDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAG 301 + +N Q+M F K A AG++ S H +R AT + G Sbjct: 199 WLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHAFATHLLNHG 258 Query: 302 ATAHELMATYGWKTVDQAETYTKGA 326 A + G + + YT A Sbjct: 259 ADLRVVQMLLGHSDLSTTQIYTHVA 283 >gi|260893180|ref|YP_003239277.1| tyrosine recombinase XerD [Ammonifex degensii KC4] gi|260865321|gb|ACX52427.1| tyrosine recombinase XerD [Ammonifex degensii KC4] Length = 302 Score = 133 bits (335), Expect = 4e-29, Method: Composition-based stats. Identities = 41/265 (15%), Positives = 88/265 (33%), Gaps = 26/265 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG-------VESRKHTPSSAIQFL 137 LA N+ ++ + + + +R + + + S+ + L Sbjct: 17 RGLADNTIAAYRTDLKHFCAFVARRQF-SLDPSSLRDACLCYLYELNAAGYLASTVARRL 75 Query: 138 TSMRVLFKW-AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF----KSFWSEGSQP 192 +++ + A + Y+ +P + PK + E++++ ++ +G + Sbjct: 76 AALKSFCAYLATQAGYLPWDPAEELSSPKIPERLPKVLRPEEVERLLTAPRTNTPQGLRD 135 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLA----- 246 R E +G+R S+ V HL ++ K G V + L Sbjct: 136 RALLELAYATGMRVSELVGLDVDHLNLEAGYVRVLGKGGKERIVPVGRVAQHYLREYLEK 195 Query: 247 -----MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299 + F+N ++ K A +AG+ S H +R AT + Sbjct: 196 AWPRLVKDRRTSALFVNRRGGRLTRQAVFKLLKDYARQAGLTSAPSPHTLRHSFATHLLE 255 Query: 300 AGATAHELMATYGWKTVDQAETYTK 324 GA + G ++ + YT Sbjct: 256 NGADLRVVQELLGHVSISTTQIYTH 280 >gi|158521685|ref|YP_001529555.1| tyrosine recombinase XerD [Desulfococcus oleovorans Hxd3] gi|158510511|gb|ABW67478.1| tyrosine recombinase XerD [Desulfococcus oleovorans Hxd3] Length = 297 Score = 133 bits (335), Expect = 4e-29, Method: Composition-based stats. Identities = 46/275 (16%), Positives = 96/275 (34%), Gaps = 24/275 (8%) Query: 74 LISEYRKSA-HWGSLAVNSRISFES----YFDQIIRKSGDF--DYRKITTKHIRSGVESR 126 L+ +Y LA NS ++ S Y D + ++ D + + R Sbjct: 7 LVDQYMSYLLIEKGLAENSLEAYGSDLAAYLDYLKAQNIDRVSETDMPVLLKYLIFLRDR 66 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 S + L ++R +++ +++ +A +P +++ PK+ + +++++ + Sbjct: 67 GLNKRSRSRHLVTLRGFYRYLAQEKVLAFSPAETIDLPKKGLRLPDVLSVDEVKKLLAAP 126 Query: 187 S----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGF 241 G + E + +GLR S+ VQ + + ++ K V + Sbjct: 127 DTTTARGMRDAAMIELMYAAGLRVSELVAMKVQDVNTEVCFVRVFGKGAKERVVPMGAYA 186 Query: 242 MKLLAMTPIGKETFFINN----------DKQKMNATQFSIWFKAKATKAGVNKS--AHGV 289 + L G + N + M F K AG+ KS H + Sbjct: 187 KEKLEAYLSGARPALLKNYASLFLFVAWRGRPMTRQGFWKALKKYGLAAGIRKSIKPHTL 246 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 R A+ + GA + G + + YT Sbjct: 247 RHSFASHLLEGGADLRSVQIMLGHSDISTTQIYTH 281 >gi|325103648|ref|YP_004273302.1| tyrosine recombinase XerD [Pedobacter saltans DSM 12145] gi|324972496|gb|ADY51480.1| tyrosine recombinase XerD [Pedobacter saltans DSM 12145] Length = 299 Score = 133 bits (335), Expect = 4e-29, Method: Composition-based stats. Identities = 49/265 (18%), Positives = 102/265 (38%), Gaps = 25/265 (9%) Query: 85 GSLAVNSRISFESYFDQIIR----KSGDFDYRKITTKHIR---SGVESRKHTPSSAIQFL 137 SL+ NS ++ + D++++ +S K+ T+ +R + S+ + + Sbjct: 18 RSLSPNSVNAYVNDVDKLVQFLSVQSNPKSLLKVNTQDLRNFIKWINEFGLIASTQSRII 77 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPR 193 + ++ +K+ + ++ + +P +E PK + + T ++ + E + + Sbjct: 78 SGIKSFYKYLLLEDLIEHDPADIIESPKIRRKLPEVLTVHEINTMLDGFDLSKPENIRNK 137 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFMKLLAM----- 247 E L SGLR S+ + L + +K G V + +K L + Sbjct: 138 AMLEILYSSGLRVSELTNLKLSDLYRELEFVKVVGKGNKERLVPVGSSALKHLEIYLENI 197 Query: 248 ------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299 ++ F+N K++ + K AT G+ K S H R AT + Sbjct: 198 RNKLNIQKGNEDIIFLNKRGSKLSRVMVFMIIKDLATAVGIKKNISPHTFRHSFATHLIE 257 Query: 300 AGATAHELMATYGWKTVDQAETYTK 324 GA + G +++ E YT Sbjct: 258 GGADLRAIQEMLGHESITTTEIYTH 282 >gi|294787717|ref|ZP_06752961.1| tyrosine recombinase XerD [Simonsiella muelleri ATCC 29453] gi|294484010|gb|EFG31693.1| tyrosine recombinase XerD [Simonsiella muelleri ATCC 29453] Length = 290 Score = 133 bits (335), Expect = 4e-29, Method: Composition-based stats. Identities = 41/262 (15%), Positives = 91/262 (34%), Gaps = 18/262 (6%) Query: 86 SLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVL 143 LA N+ ++ ++ ++ D+ + S + P S + L++ + L Sbjct: 17 RLAHNTLEAYRRDLSKLAQRLDTQHADFWTADAVALASAIYVSDEQPRSQARSLSACKRL 76 Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAFEFL 199 + W V +P ++ K + T++ ++ + G + + E + Sbjct: 77 YAWLVETGQREDDPTRDLKATKLPHTLPKIITEQQIENLLNMPDCDTPHGLRDKALLELM 136 Query: 200 LYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLL----------AMT 248 +GLR +++ + + + N + T K V L + + + + Sbjct: 137 YATGLRVTEAVKLRMNEINLNHGLVNTIGKGDKQRIVPLGEEAVHWIGQYVQFSRPQLLK 196 Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHEL 307 + F++ K M + K A G+ S H +R AT + GA + Sbjct: 197 GRRCDELFVSQKKSGMTRQLAWLIVKQYADLVGIKSLSPHSLRHAFATHLVNHGADLRTV 256 Query: 308 MATYGWKTVDQAETYTKGADRI 329 G + + YT A+ Sbjct: 257 QMLLGHADIATTQIYTHVANER 278 >gi|281424449|ref|ZP_06255362.1| putative integrase [Prevotella oris F0302] gi|281401435|gb|EFB32266.1| putative integrase [Prevotella oris F0302] Length = 407 Score = 133 bits (335), Expect = 4e-29, Method: Composition-based stats. Identities = 57/361 (15%), Positives = 125/361 (34%), Gaps = 52/361 (14%) Query: 16 TRHGKIIYYF--RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73 ++G + Y + ++ + + + Y+ A + +R+ + T ++ Sbjct: 41 DKNGNPVLYETGKMAGKPKVHIKHNRRKENLQLYLIAKPRTPVERQQNKETLELATKIRA 100 Query: 74 LISE--------YR----KSAHWGSLAVN-----SRISFE-------SYFDQIIRKSGDF 109 + YR ++ ++ ++ + D + + + Sbjct: 101 EREQQFKESMLGYRLKKDRNVNFLDYYQAYIDSYTKKDLRMIKIALNRFKDFLKEQYPLY 160 Query: 110 DYRKITTKHIRSGVESR-------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE 162 ++ I I + R + A + + ++A+ E + +PC V Sbjct: 161 EF-SIKPDLIIKDMMERFVEYLQSRSVGEGAKSIYQRFKKVVRYAIDHEVMLKDPCKGV- 218 Query: 163 RPKRKTEGIR--PWTKEDMQQFKSFWSEGSQP--RLAFEFLLYSGLRCSDSCRAGVQHLQ 218 K + +R + +++Q + P R AF LY GLR D +++ Sbjct: 219 VCKVDEQILRKDVLSMDEIQSLIQCHYDNENPNVRRAFILCLYCGLRFCDVKDLTYKNID 278 Query: 219 --NNIFSIKTQKTG-----TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI 271 N++ + KT + + + L DG + L+ P + N + S Sbjct: 279 YTNHLLKFEQNKTKGHSANSGVIIPLNDGLLSLIGEAPEDLNSSIFNLP----SYESCSK 334 Query: 272 WFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 K +AG+NK S H R A + GA + + G + E YT+ D++ Sbjct: 335 SVKRWVKRAGINKHISWHCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYTRAVDKL 394 Query: 330 R 330 + Sbjct: 395 K 395 >gi|242399198|ref|YP_002994622.1| Probable tyrosine recombinase xerC-like protein [Thermococcus sibiricus MM 739] gi|242265591|gb|ACS90273.1| Probable tyrosine recombinase xerC-like protein [Thermococcus sibiricus MM 739] Length = 278 Score = 133 bits (335), Expect = 4e-29, Method: Composition-based stats. Identities = 44/282 (15%), Positives = 107/282 (37%), Gaps = 20/282 (7%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134 I E++ + + + Y ++ ++ + +YR + ++ ++ S Sbjct: 5 IEEFKTYLELEGKSPQTVRMYTYYVERFLKDVENPNYRS--ALRFLAKLKKEGYSNKSLN 62 Query: 135 QFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK-SFWSEGSQP 192 + +++ F++ + ++ ++ PK + T+ED+++ + + Sbjct: 63 LVVQALKSYFRFEGLDED------AEKLKSPKVPRSLPKSLTREDVKRLLNAVPPTRKRD 116 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVEL----PDGFMKLLA 246 RL L +GLR S+ C ++ + + +++ K V L K L Sbjct: 117 RLIILLLYGTGLRVSEVCNLKIKDIDFNRGVLTVEGGKGAKDRIVPLSGSLLKEIEKYLE 176 Query: 247 MTPIGKETFFI---NNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGAT 303 G E F+ K K++ K KA V+ + H +R AT + G Sbjct: 177 TRKDGSEYLFVEIRREKKDKISPKTVWYLLKKYGNKANVSVTPHMLRHSFATHMLERGVD 236 Query: 304 AHELMATYGWKTVDQAETYTK-GADRIRLGIKNSRRISSVVD 344 + G ++ + YTK + ++ + ++ I +++ Sbjct: 237 IRVIQEILGHSSLSTTQIYTKVTVEHLKKAQEKAKLIDELIE 278 >gi|311279140|ref|YP_003941371.1| integrase family protein [Enterobacter cloacae SCF1] gi|308748335|gb|ADO48087.1| integrase family protein [Enterobacter cloacae SCF1] Length = 338 Score = 133 bits (335), Expect = 4e-29, Method: Composition-based stats. Identities = 62/335 (18%), Positives = 110/335 (32%), Gaps = 35/335 (10%) Query: 7 LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66 PP V + GK + + G I L ++ K E ++ Sbjct: 13 FPPRVYR-----GKSKFEYHPAGGGSISLCPLDSP---------VSLVWAKYEEAKMKKE 58 Query: 67 KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126 + L+ L E+ +SA + L+ ++R + Y ++++ G + +HIR ++ R Sbjct: 59 QSANLQSLALEFFESADFNKLSQDTRKDYTKYSNKLMPVFGKMAPDLVKPQHIRQYMDKR 118 Query: 127 K-HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + + A + + L+ WA + V NPC V + K T E+ S Sbjct: 119 GVASQTQANREKAFLSRLYSWAYERGKVKANPCKGVRQFKEVERDRYT-TDEEYDALYSV 177 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245 ++A E R D L I+ KTG D + Sbjct: 178 SPV--VVQVAMEIAYLCLARQKDVLTLKKSELLEPGIFIEQHKTGKKQIKAWSDRLRAAI 235 Query: 246 AMTP-------IGKETFFINNDKQKMNATQFSIWFKAKATKA-------GVNKSAHGVRK 291 A+ + D QK F+ ++A +A + + H + K Sbjct: 236 ALAKELQLKAGMSSIYVLHKADGQKYTRDGFNSRWEAAREEARKKFPHLSFDFTFHDL-K 294 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 + T E G KT+ Q Y + Sbjct: 295 AKGVSDLE--GTLQEKQQISGHKTITQTARYDRKV 327 >gi|81428597|ref|YP_395597.1| site-specific DNA-tyrosine recombinase, XerC [Lactobacillus sakei subsp. sakei 23K] gi|78610239|emb|CAI55288.1| Site-specific DNA-tyrosine recombinase, XerC [Lactobacillus sakei subsp. sakei 23K] Length = 303 Score = 133 bits (335), Expect = 4e-29, Method: Composition-based stats. Identities = 43/278 (15%), Positives = 108/278 (38%), Gaps = 29/278 (10%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK---ITTKHIRSGVESRK 127 L++LI + S + +++ D + G +++ + + + ++ +K Sbjct: 12 LQYLIVDRHYSPETQK---AYQADIKAFVDFLAANGGLTSFKQVGTLEVQTYLNEMDQKK 68 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-- 185 ++ + + ++S+R +++ +R E++ +P +V+ K++ + R + +++M + Sbjct: 69 YSGETIARRISSLRSFYRYLIRNEFLQTDPFETVQLKKQRHKLPRFFYEKEMDALFAAIV 128 Query: 186 --WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVE------ 236 + R E L +G+R S+ + + + + K V Sbjct: 129 GQEPLTQRNRAILELLYATGMRVSECAQLTIGQIDFGLRVILVHGKGNKDRYVPFGNHAT 188 Query: 237 ------LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWF----KAKATKAGVNKSA 286 L DG ++L+A + F+N+ + + K +G++ Sbjct: 189 KALQDYLNDGRVQLMAKRQQEHDVVFVNHLGNPITSRGIEYALDQVDKKTCLTSGIH--P 246 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R AT D GA + G ++ + YT Sbjct: 247 HMIRHTFATHLLDHGADLRTVQELLGHSSLSTTQIYTH 284 >gi|308176942|ref|YP_003916348.1| tyrosine recombinase subunit XerD [Arthrobacter arilaitensis Re117] gi|307744405|emb|CBT75377.1| tyrosine recombinase subunit XerD [Arthrobacter arilaitensis Re117] Length = 307 Score = 133 bits (334), Expect = 4e-29, Method: Composition-based stats. Identities = 50/292 (17%), Positives = 93/292 (31%), Gaps = 32/292 (10%) Query: 75 ISEYRKS-AHWGSLAVNSRISFESYFDQIIR-----------KSGDFDYRKITTKHIRSG 122 + Y + A LA N+ S+ + + K + R Sbjct: 9 LKRYLQHLAIERGLAENTLASYRRDLLRYVDTMQAAGVEQPQKITELAISGYLQDLSRGN 68 Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 + + + S + ++R L K+ + NP ++ P + + + + Sbjct: 69 EKHKALSARSVARHSVAIRQLHKYWELEGICVPNPAREIQPPAIGQSLPKAISIDQVTSI 128 Query: 183 KS----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT--QKTGTIITVE 236 G + R EFL +G R S+ V L ++ K V Sbjct: 129 LESVSIETPAGLRDRAILEFLYSTGARISEVVDLDVDDLHFAQDAVVRLFGKGSKERVVP 188 Query: 237 L--------PDGFMKL---LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--N 283 + D ++ LA G F+N +++ + A +AG+ Sbjct: 189 VGGYAQRAVSDYLVRARPSLAAKGKGTPALFLNQRGGRLSRQSVWLLLSKAAERAGITTE 248 Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIK 334 S H +R AT + GA + G +V + YTK D +R + Sbjct: 249 VSPHTLRHSFATHLLEGGADVRVVQELLGHASVTTTQIYTKVTVDSLREAYQ 300 >gi|269103442|ref|ZP_06156139.1| site-specific recombinase XerD [Photobacterium damselae subsp. damselae CIP 102761] gi|268163340|gb|EEZ41836.1| site-specific recombinase XerD [Photobacterium damselae subsp. damselae CIP 102761] Length = 298 Score = 133 bits (334), Expect = 4e-29, Method: Composition-based stats. Identities = 37/265 (13%), Positives = 90/265 (33%), Gaps = 23/265 (8%) Query: 85 GSLAVNSRISFESYFDQI-----IRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139 L+ N+ S+ + ++ K + + + + + +S + +++ Sbjct: 19 RGLSENTLASYRNDLTKLMMWMKEHKLVLESISADDLQRYQQWLFDQDYKQTSRARMVSA 78 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195 +R +F++ R++ +P + PK + ++ + + + Sbjct: 79 IRRVFQYLHREKIRVDDPSAMLISPKLPKRLPKDISEAQVDALLDAPNVDDPIELRDKAM 138 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGK-- 252 E L +GLR ++ ++++ ++ K V + + + + Sbjct: 139 LELLYATGLRVTELVSLTMENISLRQGVVRVVGKGDKERLVPMGENAVDWIEQFLAQGRP 198 Query: 253 --------ETFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKFSATISADAG 301 + F + Q+M F K A AG++ S H +R AT + G Sbjct: 199 MLLGEKSSDVVFPSKRAQQMTRQTFWHRIKHYAVLAGIDADTLSPHVMRHAFATHLLNYG 258 Query: 302 ATAHELMATYGWKTVDQAETYTKGA 326 A + G + + YT A Sbjct: 259 ADLRVVQMLLGHSDLSTTQIYTHVA 283 >gi|218688807|ref|YP_002397019.1| putative integrase from prophage [Escherichia coli ED1a] gi|218426371|emb|CAR07196.1| putative integrase from prophage [Escherichia coli ED1a] Length = 339 Score = 133 bits (334), Expect = 4e-29, Method: Composition-based stats. Identities = 59/335 (17%), Positives = 102/335 (30%), Gaps = 39/335 (11%) Query: 7 LPPFVTKERTRHGKIIYYFRKGHGR-----RIRLPYPHESTFIPAYMSALTGSTPKREYI 61 LPP V Y K G R+ + Y E Sbjct: 13 LPPRVRS------NGYSYVWKPEGSTRTIGLGRVRKTSVAKVWQNY-----------ELE 55 Query: 62 NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121 + T+ L + S + LA ++ + + ++ G + T+ +R Sbjct: 56 KAKLHNIMTVAKLWHMFMDSPAFTELAPRTQKDYRQHQKALLMVFGKVLADNVKTEQVRI 115 Query: 122 GVESRK-HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 ++ R + + A L S+ ++ W + YV NPC V + K + T E Sbjct: 116 FMDKRGLESKTQANHELASLSRVYGWGYERGYVKNNPCKGVRKFSLKARTVYI-TDEQYA 174 Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240 + Q R+A E R D Q + + I+ KTGT E Sbjct: 175 AIYA--EAIPQLRIAMEISYLCAARLGDVLELKWQDIMDKGIYIEQNKTGTKQIKEWSPR 232 Query: 241 FMKLLAMT----PIGKETFFINNDKQKMNATQFSIWFKAKATKA----GVN--KSAHGVR 290 + + E K+ A + W+ A GV + H + Sbjct: 233 LRTAIQLARNVSSCTCEYVINTTKGGKVIAKTLNNWWNQAKRSAEQKVGVPFGCNFHDI- 291 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 K + ++ + G KT +Q Y + Sbjct: 292 KAKGISDYE--GSSRDKQIFSGHKTENQVLIYDRK 324 >gi|237785449|ref|YP_002906154.1| integrase/recombinase [Corynebacterium kroppenstedtii DSM 44385] gi|237758361|gb|ACR17611.1| integrase/recombinase [Corynebacterium kroppenstedtii DSM 44385] Length = 326 Score = 133 bits (334), Expect = 4e-29, Method: Composition-based stats. Identities = 42/308 (13%), Positives = 98/308 (31%), Gaps = 35/308 (11%) Query: 51 LTGSTPKREYINSPRKKPTTLKW---LISEYRKSAH-WGSLAVNSRISFESYFDQIIR-- 104 ++ S P + PR+ + +++ Y + + N+ +++ ++ + Sbjct: 1 MSSSGPLTPSADEPREGQHSGADASHMVAAYIDHLAVEKNASPNTLSNYQRDLNKYVAWL 60 Query: 105 KSGDFDYRKITTKHIRSGVESRKHT----------PSSAIQFLTSMRVLFKWAVRQEYVA 154 D + + I + + SSA + ++R L +++ + +A Sbjct: 61 DQHDLNIDSVDEPDIEQFIADLRRGDSTLGWSPLAASSAARATVAVRSLHRFSHEEGQLA 120 Query: 155 INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS-------EGSQPRLAFEFLLYSGLRCS 207 + V + T E + + + R E L +G+R S Sbjct: 121 RDVAAGVTVLRSGQSLPHALTVEQVNRLIEACPVNESSNPIALRDRAVIELLYGTGMRIS 180 Query: 208 DSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFMKLLAMT---------PIGKETFFI 257 ++ + + N ++ G V + + + + F+ Sbjct: 181 EALNLDIDSIDRNHAYVRVVGKGRKERLVPIGAPALHAIDAWLVRGRPSMVKRSDKALFL 240 Query: 258 NNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKT 315 N ++ + A A + G+ S H +R AT GA + G + Sbjct: 241 NARGNRLGRQSVWKFLHAAAERCGLGDSVGPHTLRHSYATHLLQGGADIRAVQELLGHAS 300 Query: 316 VDQAETYT 323 V + YT Sbjct: 301 VTTTQIYT 308 >gi|57234468|ref|YP_181457.1| tyrosine recombinase XerC [Dehalococcoides ethenogenes 195] gi|57224916|gb|AAW39973.1| tyrosine recombinase XerC [Dehalococcoides ethenogenes 195] Length = 307 Score = 133 bits (334), Expect = 4e-29, Method: Composition-based stats. Identities = 40/264 (15%), Positives = 91/264 (34%), Gaps = 25/264 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE------SRKHTPSSAIQFLT 138 +++ + ++ + + + + + S + L+ Sbjct: 16 KNVSAYTLRNYRTDLIGFVNYLIEKKVSSFDKVDRYILRDYMSSLIEKGIVKGSIARKLS 75 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRL 194 ++R +++ +R+ + NP L+ P+ T ++ + +G + + Sbjct: 76 AVRSFYRYLMREGLIQKNPTLNASSPRLDKRLPEFLTTAEVNKLLRIPDSSTPQGLRDKA 135 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL---------- 244 E L SGLR S+ + +++L + I+ G+ + + G + Sbjct: 136 FMELLYASGLRVSELVKLDIENLDLHSHQIRVWGKGSKERI-VLMGLPAIQSIQTYLNLG 194 Query: 245 --LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADA 300 L F+N + +++A F A +AG+ K H +R AT D Sbjct: 195 RPLLKGKRNTPALFLNPNGGRLSARSFQERLDKLAHQAGIEKHVHPHMLRHTFATHLLDG 254 Query: 301 GATAHELMATYGWKTVDQAETYTK 324 GA + G + + YT Sbjct: 255 GADLRVVQELLGHSNLSTTQIYTH 278 >gi|294625207|ref|ZP_06703848.1| tyrosine recombinase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292600481|gb|EFF44577.1| tyrosine recombinase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 323 Score = 133 bits (334), Expect = 4e-29, Method: Composition-based stats. Identities = 45/273 (16%), Positives = 92/273 (33%), Gaps = 29/273 (10%) Query: 85 GSLAVNSRISFESYFDQIIR-----KSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139 +A + S+ + + R G + ++P S + L++ Sbjct: 38 QGVARQTLESYRRDLEGLARWRDGAGGGLLGIDRAVLFDYLRWRTRANYSPRSTARLLST 97 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRLA 195 +R + +R + +P ++ P+ + T+ ++ + G + R Sbjct: 98 LRAFYGLCLRDGVRSDDPTALIDPPQLPRSLPKALTESQIEALLAAPDLDTLAGLRDRAM 157 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-ITVEL---------------PD 239 E + +GLR S+ + ++ G+ V L Sbjct: 158 LELMYAAGLRVSELVNLPAVGVNLRQGVLRVTGKGSKDRLVPLGEESQHWLERYLREARP 217 Query: 240 GFMKLLAMTPIGKET-FFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSAT 295 +T + + FI+ +Q ++ QF K A AG++ S HG+R AT Sbjct: 218 LLAANKPVTAVDGQVPLFIDVSRQPLSRQQFWALVKRYAAAAGIDPATVSPHGLRHSFAT 277 Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADR 328 + GA L G ++ + YT A + Sbjct: 278 HLLNHGADLRALQMLLGHSSLSTTQIYTLVARQ 310 >gi|212224162|ref|YP_002307398.1| integrase/recombinase [Thermococcus onnurineus NA1] gi|254799323|sp|B6YWN8|XERCL_THEON RecName: Full=Probable tyrosine recombinase xerC-like gi|212009119|gb|ACJ16501.1| integrase/recombinase [Thermococcus onnurineus NA1] Length = 282 Score = 133 bits (334), Expect = 5e-29, Method: Composition-based stats. Identities = 47/286 (16%), Positives = 101/286 (35%), Gaps = 20/286 (6%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130 + +I EY + N+ + Y + + G+ R + + ++ Sbjct: 4 INEVIEEYETYLDLEGKSPNTIRMYSYYVRRYLEGGGELKARS--ALRFLAKLRREGYSN 61 Query: 131 SSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 S + ++R F++ +E + PK + T+E++++ S Sbjct: 62 KSLNLVVQALRSYFRFEGYDEE------AEKLRPPKVPKSLPKSLTREEVRKILSVIPPT 115 Query: 190 S-QPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMK--- 243 + RL F L +GLR S+ C + ++ ++ K V +P ++ Sbjct: 116 KKRDRLIFLLLYGAGLRVSELCNLKKSDVDFERSLIIVRGGKGAKDRVVPIPAFLLEGIK 175 Query: 244 -LLAMTPIGKETFFI---NNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISAD 299 L E + K K++ K +AG+ + H +R AT + Sbjct: 176 AYLETRDDDSEYLIVEDRRERKDKLSPKTVWYLLKKYGDRAGIRVTPHMLRHSFATHMLE 235 Query: 300 AGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNSRRISSVVD 344 G + G + + YTK + +R + +R I +++ Sbjct: 236 NGVDIRAIQELLGHSNLSTTQIYTKVTVEHLRKAQEKARLIEGLIE 281 >gi|167756958|ref|ZP_02429085.1| hypothetical protein CLORAM_02507 [Clostridium ramosum DSM 1402] gi|167703133|gb|EDS17712.1| hypothetical protein CLORAM_02507 [Clostridium ramosum DSM 1402] Length = 312 Score = 133 bits (334), Expect = 5e-29, Method: Composition-based stats. Identities = 53/282 (18%), Positives = 100/282 (35%), Gaps = 23/282 (8%) Query: 71 LKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDF----DYRKITTKHIRSGVES 125 +K +SEY++ L+ N+ S+ G+ I +HI ++ Sbjct: 13 IKDALSEYKQYLIVEKGLSKNTIYSYLRDLIAFSNFIGEEYEINQIENINKEHIHLYLKE 72 Query: 126 RKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM---- 179 T +S + L S+R+L+ + V++ V N S PKR + ++E+M Sbjct: 73 LSKTNCTNSISRKLVSLRMLYIFLVKENIVKENLMSSFTLPKRDKKLPIVLSQEEMIEIL 132 Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELP 238 + S+ R E L +G+R S+ ++ L + IK K + + Sbjct: 133 DGIIVCDAISSRNRCMVELLYATGMRISELLNLTLKDLNIKMGFIKVIGKGNKERMIPIG 192 Query: 239 DGFMKLLAMTPIG---------KETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAH 287 ++L F N Q+++ +F + + K S H Sbjct: 193 SYVGEILEQYINDYRAEFNIKNDSLLFFNKHGQRLSREEFYSILQTIVNSTSITKKVSPH 252 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 R AT + GA + G + YT +++ Sbjct: 253 TFRHTFATHLLENGADLRSIQELLGHSDISTTTIYTHISNQK 294 >gi|189425748|ref|YP_001952925.1| tyrosine recombinase XerD [Geobacter lovleyi SZ] gi|189422007|gb|ACD96405.1| tyrosine recombinase XerD [Geobacter lovleyi SZ] Length = 295 Score = 133 bits (334), Expect = 5e-29, Method: Composition-based stats. Identities = 55/284 (19%), Positives = 98/284 (34%), Gaps = 19/284 (6%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130 L WL E SA+ S + Y +++ R + D + R P Sbjct: 9 LAWLTVEKGLSANTRSAYAADLGRYLDYLERLQRDTPD-SIQPSDIAEFLGKERERGLAP 67 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---- 186 S + L+++R+L ++ + + Y NP +E P+ + + ++ + Sbjct: 68 RSRARLLSAIRMLHRFLLIERYAVTNPSAIIEAPRPLKKLPTFLSMAEVDRLLGATHGSR 127 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVEL-------- 237 SE + R E L +GLR S+ + + I + T K + + Sbjct: 128 SEDIRDRAMLELLYATGLRVSELVNLKQREVNLEIGYLMTIGKGNKERLIPIGAAACHRV 187 Query: 238 PDGFMKLLAMTPIGK--ETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFS 293 D ++ + F++ + M F K +A AGV S H +R Sbjct: 188 ADYLEQVRSKQDPEGLQPQLFLSRLGEAMTRQAFWNIIKKRALLAGVRTSISPHTLRHSF 247 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 AT GA + G + + YT R RL + Sbjct: 248 ATHLLANGADLRSVQIMLGHADLSTTQIYTH-VTRERLKQLHRE 290 >gi|307269737|ref|ZP_07551067.1| phage integrase, SAM-like domain protein [Enterococcus faecalis TX4248] gi|306513847|gb|EFM82449.1| phage integrase, SAM-like domain protein [Enterococcus faecalis TX4248] Length = 301 Score = 133 bits (334), Expect = 5e-29, Method: Composition-based stats. Identities = 43/281 (15%), Positives = 103/281 (36%), Gaps = 24/281 (8%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYR--KITTKHIRSGVESRKH 128 + +I E+ + + +++S + ++ KHI+S + + Sbjct: 3 WEDIILEFCMDITVRGFSKITIKNYKSKLRNTANFFKSINVEPLQLEKKHIKSWIIDMQE 62 Query: 129 T---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 S+ ++ ++ LF + + ++Y+ NP + +ER K + + I P +++Q + Sbjct: 63 KEMQASTINVSVSRLKKLFDYMLIEKYIDYNPFVDIERLKEQRKVIYPLNDYEIKQMLTV 122 Query: 186 WSEGSQPRLA------FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD 239 + +A ++ GLR S+ C + + NN I+ K V + Sbjct: 123 AKKHPYKHIAQRNVVILMLMIECGLRISEVCEIRDEDIMNNQIIIRKSKNNKDRAVAVSP 182 Query: 240 GFMKLLAMTPI---------GKETFFINNDKQKMNATQFSIWFKAKATKAGV-NK---SA 286 K + F ++N +K+N + + + + S Sbjct: 183 ILKKEIIKYQRIKKRKYGLLEGNLFIVSNLGKKLNEKSIWQIMQEIKKQIDIRDCVRFSG 242 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 H +R A++ G + L G +++ + Y + + Sbjct: 243 HTLRHTYASMQLRNGLDIYTLSLNMGHSSIEMTQRYVQTLN 283 >gi|240103689|ref|YP_002959998.1| xerC/D integrase/recombinase protein (xerC/xerD) [Thermococcus gammatolerans EJ3] gi|239911243|gb|ACS34134.1| xerC/D integrase/recombinase protein (xerC/xerD) [Thermococcus gammatolerans EJ3] Length = 283 Score = 133 bits (334), Expect = 5e-29, Method: Composition-based stats. Identities = 43/282 (15%), Positives = 101/282 (35%), Gaps = 20/282 (7%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134 I E+ + N+ + Y + + G D+R + + ++ S Sbjct: 9 IEEFATYLDLEGKSPNTIRMYTYYVRRYLEHGGGLDFRS--ALRFLARLRREGYSNRSLN 66 Query: 135 QFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-GSQP 192 + ++R F++ + +E ++ P+ + T+ED+++ S + Sbjct: 67 LVVQALRAYFRFEGLDEE------AEKLKPPRVPKSLPKALTQEDVRKLLSVIPLTRRRD 120 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAM--- 247 RL L +GLR S+ C + + I +++ K V +P + + Sbjct: 121 RLIVLLLYGAGLRVSELCNLKKEDIDLDRGIITVRGGKGAKDRVVPIPPALTEEIKAYLS 180 Query: 248 -TPIGKETFFINNDKQ---KMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGAT 303 E + + +++ KAGV + H +R AT + G Sbjct: 181 ERDDDSEYLLVEVRRGTKDRLSPKTVWYLLNRYGKKAGVKVTPHMLRHSFATHMLERGVD 240 Query: 304 AHELMATYGWKTVDQAETYTK-GADRIRLGIKNSRRISSVVD 344 + G + + YTK + ++ + ++ + S+++ Sbjct: 241 IRAIQELLGHSNLSTTQIYTKVTVEHLKKAQEKAKLLESLME 282 >gi|227549328|ref|ZP_03979377.1| site-specific tyrosine recombinase XerD [Corynebacterium lipophiloflavum DSM 44291] gi|227078647|gb|EEI16610.1| site-specific tyrosine recombinase XerD [Corynebacterium lipophiloflavum DSM 44291] Length = 301 Score = 133 bits (334), Expect = 5e-29, Method: Composition-based stats. Identities = 49/275 (17%), Positives = 97/275 (35%), Gaps = 30/275 (10%) Query: 85 GSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIRSGVESRKH--------TPSSA 133 +A N+ ++ ++ I +G ++T H+ + V + + SSA Sbjct: 18 RGVAANTLSNYRRDVERYIAWLEAAGISRLDDVSTNHVEAYVADLRRGVGRAKPLSASSA 77 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS--- 190 + L R L K+AV + + +V P + + +++ + + Sbjct: 78 GRALVVARGLHKFAVAEGLTQADVASAVAPPSAGEKLPDTLSIDEVARLLDACPTRTPCD 137 Query: 191 -QPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDGFMKLLAM 247 + + E L +G R S+ V + ++ ++ T K V L + + Sbjct: 138 LRDKALLEVLYATGARVSEVLGLVVDDVASDADVLTV-TGKGSKQRLVPLGSHAREAVDA 196 Query: 248 TPIGKE---------TFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATI 296 + F+N ++ K A +AG+ K S H +R AT Sbjct: 197 YLVRGRPVLAKGSTYALFLNRRGTALSRQSAWGIIKDAAERAGLAKDISPHTLRHSFATH 256 Query: 297 SADAGATAHELMATYGWKTVDQAETYTK-GADRIR 330 + GA + G +V + YT AD +R Sbjct: 257 LLEGGADVRTVQELLGHASVTTTQIYTHITADNLR 291 >gi|217967855|ref|YP_002353361.1| tyrosine recombinase XerD [Dictyoglomus turgidum DSM 6724] gi|217336954|gb|ACK42747.1| tyrosine recombinase XerD [Dictyoglomus turgidum DSM 6724] Length = 296 Score = 133 bits (334), Expect = 5e-29, Method: Composition-based stats. Identities = 42/264 (15%), Positives = 90/264 (34%), Gaps = 19/264 (7%) Query: 85 GSLAVNSRISFESYFDQ--IIRKSGDFDYRKITTKHIRSGVESR--KHTPSSAIQFLTSM 140 +++ N+ S+ + I + + + + + + + S ++ S + ++S+ Sbjct: 16 KNMSPNTIDSYRRDLEDFIIFLQKEKVNIKNLKREEWQRYLVSLYNRYKIKSIARKISSI 75 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRLAF 196 R K+ +R+ Y+ N + PK ++++ F G + Sbjct: 76 RSFLKFLLREGYINRNYSSFMIIPKIPMYLPEILDNKEIENFLKIPDPLSPLGIRNIAIL 135 Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAM-------- 247 E +G+R S+ VQ + ++ K + L D ++ L Sbjct: 136 ETFYATGMRVSELVNLDVQSINLEEKYVRCFGKGDKERIIPLGDYAVESLKKYLLVRDSF 195 Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAH 305 P ++ F+N +++ K + G+ K S H R AT GA Sbjct: 196 NPKDEKALFLNKKGERITRQGVWFIIKTYSKILGLPKKVSPHTFRHSFATHLLSNGADIR 255 Query: 306 ELMATYGWKTVDQAETYTKGADRI 329 + G V + YT Sbjct: 256 IVQELLGHSDVATTQIYTHIVSSK 279 >gi|225573518|ref|ZP_03782273.1| hypothetical protein RUMHYD_01711 [Blautia hydrogenotrophica DSM 10507] gi|225039115|gb|EEG49361.1| hypothetical protein RUMHYD_01711 [Blautia hydrogenotrophica DSM 10507] Length = 294 Score = 133 bits (334), Expect = 5e-29, Method: Composition-based stats. Identities = 43/260 (16%), Positives = 88/260 (33%), Gaps = 22/260 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSG------DFDYRKITTKHIRSGVESRKHTPSSAIQFLT 138 + N+ IS+E +++ + S + K S+ + + Sbjct: 16 KQTSNNTEISYERDLNKMAAYLERQGVYNPLKVTETDLNGYLSYLRRNKFAASTISRSVA 75 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRL 194 S+R +++ R + +P +++ PK + + T E++ S G + + Sbjct: 76 SIRAFYQFLFRAHQIVQDPSENLKPPKVEKKTPEILTVEEVDLLLRQPSLDTAKGLRDKA 135 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL--------A 246 E L +G+R S+ V + N+ + + + + + L Sbjct: 136 MLELLYATGMRVSELMHLKVSDVNLNLGYVDCSEGARERVIPFGNVCKRALVQYLEQGRE 195 Query: 247 MTPIGKET--FFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGA 302 ET F N + M+ F K A+ AG+ + + H +R A GA Sbjct: 196 AFQRKGETDILFPNCSGKMMSRQGFWKVLKGYASAAGITTDITPHTLRHSFAAHMLQNGA 255 Query: 303 TAHELMATYGWKTVDQAETY 322 L G + + Y Sbjct: 256 DIKSLQEMLGHSDISTTQMY 275 >gi|145295553|ref|YP_001138374.1| site-specific tyrosine recombinase XerD [Corynebacterium glutamicum R] gi|140845473|dbj|BAF54472.1| hypothetical protein [Corynebacterium glutamicum R] Length = 304 Score = 133 bits (334), Expect = 5e-29, Method: Composition-based stats. Identities = 53/277 (19%), Positives = 97/277 (35%), Gaps = 31/277 (11%) Query: 85 GSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIRSGVESRKH--------TPSSA 133 L+ N+ ++ ++ +G D R ITT H+ S V+ + + SSA Sbjct: 18 RGLSANTLSNYRRDVERYCDWLEAAGLDDIRDITTAHVESYVKDLRRGIDGQQALSASSA 77 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----- 188 + L R L K+A+ + VA + V P + ++ Sbjct: 78 GRALIVARGLHKFALMEGEVAADVAADVSPPAMGRHLPDTLSINEVALLIDAIPHSDIAT 137 Query: 189 --GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------EL 237 + R E L +G R S++ V + ++ G+ + + Sbjct: 138 PVDLRDRALVELLYGTGARISEAIGLAVDDVSEMPEVLRITGKGSKKRIVPFGSMAQQAV 197 Query: 238 PDGFMKLLAMTPIGKET-FFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSA 294 + ++ GK F+N ++ K +AG++K S H +R A Sbjct: 198 REYLIRARPALSKGKSHALFLNQRGGPLSRQSAWAVLKKTVERAGLDKDISPHTLRHSFA 257 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTK-GADRIR 330 T + GA + G +V + YT AD +R Sbjct: 258 THLLEGGADVRVVQELLGHSSVTTTQIYTHITADSLR 294 >gi|15678913|ref|NP_276030.1| integrase-recombinase protein [Methanothermobacter thermautotrophicus str. Delta H] gi|73920472|sp|O26979|XERCL_METTH RecName: Full=Probable tyrosine recombinase xerC-like gi|2621988|gb|AAB85391.1| integrase-recombinase protein [Methanothermobacter thermautotrophicus str. Delta H] Length = 311 Score = 133 bits (334), Expect = 5e-29, Method: Composition-based stats. Identities = 51/288 (17%), Positives = 100/288 (34%), Gaps = 33/288 (11%) Query: 74 LISEYRKSAHWGSLAVNSRISFESY----FDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129 LI +Y + + N+ +++S ++ ++ + +D R++ R ++ Sbjct: 26 LIEDYLIELEIRNYSPNTIKTYKSIVKNFYEFLMNEDDLYDDRRVLRSFKRYIQYLKRDK 85 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 + V+ K+ E+ I+ V+ PKR + +++++ + Sbjct: 86 KVTQNYIYLVTVVVKKF---FEFSGIDCLEEVKAPKRTKSLPKSLNEDEVKSLINAVEVA 142 Query: 190 -----------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238 ++ RL L SGLR S+ + + + +I+ + G + L Sbjct: 143 DDGSVIRRFIKTRDRLILSLLYSSGLRVSELVSLRINDIDPDERTIRIRGKGDKDRIVLF 202 Query: 239 DG-----FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRK 291 D M L E F+N + + K A KAG+ K + H +R Sbjct: 203 DENTRDLLMDYLKRRIHESEYLFLNRFGDPLTPRYVQMMIKNYARKAGIKKKVTPHILRH 262 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGA--------DRIRL 331 AT G + G + + YT DR RL Sbjct: 263 SFATHLLKNGVDIRAIQQLLGHSNLSTTQIYTSVDMQTLKNVYDRARL 310 >gi|169826674|ref|YP_001696832.1| integrase-recombinase protein [Lysinibacillus sphaericus C3-41] gi|168991162|gb|ACA38702.1| integrase-recombinase protein [Lysinibacillus sphaericus C3-41] Length = 277 Score = 132 bits (333), Expect = 5e-29, Method: Composition-based stats. Identities = 38/254 (14%), Positives = 92/254 (36%), Gaps = 10/254 (3%) Query: 86 SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE---SRKHTPSSAIQFLTSMRV 142 + + S++ Q +S + +Y ++ K IR+ + + S LT+++ Sbjct: 16 QFSSETIRSYKISLSQFFSES-EKNYDEVRAKDIRNWLATLSEKGLKIRSIQLKLTALKS 74 Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS 202 +++ + + + NP V+ PK + K + + + + R E L + Sbjct: 75 FYQYCIEENKINHNPTKKVKTPKSEDLLPYYLNKRQLALLQELTKDNLRERAIVEVLYAT 134 Query: 203 GLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITV----ELPDGFMKLLAMTPIGKETFF 256 G+R ++ ++ + I+ K V E L + + F Sbjct: 135 GVRINELLNIKLEDIKWDTRQIWIRKGKGNKDRFVLFSHECALRLKNYLHVRYENSDFLF 194 Query: 257 INNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTV 316 + + ++ ++F+ + + G + H +R A A+ G + G + Sbjct: 195 SSPRGKHISCDLVQLFFRKYSKELGFKVTPHTLRHTFAAHLAEKGMEFIYIQDLLGHANI 254 Query: 317 DQAETYTKGADRIR 330 + YT+ + R Sbjct: 255 NSTRIYTRLMNHAR 268 >gi|224824765|ref|ZP_03697872.1| tyrosine recombinase XerD [Lutiella nitroferrum 2002] gi|224603258|gb|EEG09434.1| tyrosine recombinase XerD [Lutiella nitroferrum 2002] Length = 296 Score = 132 bits (333), Expect = 5e-29, Method: Composition-based stats. Identities = 43/267 (16%), Positives = 91/267 (34%), Gaps = 22/267 (8%) Query: 86 SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR-----KHTPSSAIQFLTSM 140 L+ N+ ++ ++ + + + + + + ++ + +++M Sbjct: 20 GLSRNTLSAYRRDLLKLGARLDEEGGVHLVEAGVADLQRALLLGVEQEKATTRARLVSAM 79 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----QQFKSFWSEGSQPRLAF 196 R +++ +P ++ERPK + +++ + + G + R Sbjct: 80 RRFYQYLHASGQRPDDPSAALERPKHGQPLPKSLSEKHVVALLEAPDVATPLGLRDRAML 139 Query: 197 EFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLLAM-------- 247 E L +GLR S+ +Q + + + K G V + + L Sbjct: 140 EVLYATGLRVSELVGLTLQQVDLTSGVVMTLGKGGKERLVPMGEVAQDWLGRYLATGRPA 199 Query: 248 --TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATA 304 T + E F+ K M A + G+ S H +R AT + GA Sbjct: 200 LLTGVPCEQVFVTRLKAGMTRQMAWHLISGYARRQGLPPVSPHTLRHAFATHLVNHGADL 259 Query: 305 HELMATYGWKTVDQAETYTKGADRIRL 331 + G + + YT A R RL Sbjct: 260 RVVQLLLGHSDISTTQIYTHVA-RERL 285 >gi|309785081|ref|ZP_07679714.1| integrase [Shigella dysenteriae 1617] gi|308927451|gb|EFP72925.1| integrase [Shigella dysenteriae 1617] Length = 339 Score = 132 bits (333), Expect = 5e-29, Method: Composition-based stats. Identities = 62/337 (18%), Positives = 114/337 (33%), Gaps = 30/337 (8%) Query: 10 FVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69 + ++ R GK F G RRI + + I A + L+ S + Sbjct: 6 YCYRD-PRTGKE---FGLGRDRRIAI-----TEAIQANIELLSDSGRESLIDRIKGADSI 56 Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--K 127 TL + Y + + + + S I RK D I+TK + + + + + Sbjct: 57 TLHAWLDRYETILSERGIRPKTLLDYASKIRAIRRKLPDKPLTDISTKEVAAMLNTYVAE 116 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 +SA +++ +F+ A+ + +VA NP + K + R E ++ + + Sbjct: 117 GKAASAKLIRSTLVDVFREAIAEGHVATNPVTATRTAKSEVRRSRLTANEYVEIYHAAEP 176 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP--------- 238 RLA + + +G R D CR + +N I+ KTG + + L Sbjct: 177 LPIWLRLAMDLAVITGQRVGDLCRMKWSDINDNHLHIEQGKTGAKLAIPLTLTIDALNIS 236 Query: 239 --DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-----NKSAHGVRK 291 D K ET + ++ S +F +G+ + H +R Sbjct: 237 LVDTLQK--CREASSSETIIASKHHDPLSPKTVSKYFTKARNASGLSFDGDPPTFHELR- 293 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 + G K+ A Y R Sbjct: 294 SLSARLYRNQIGDKFAQRLLGHKSDSMAARYRDSRGR 330 >gi|324114504|gb|EGC08473.1| bacteriophage lambda integrase domain-containing protein [Escherichia fergusonii B253] Length = 357 Score = 132 bits (333), Expect = 6e-29, Method: Composition-based stats. Identities = 61/341 (17%), Positives = 113/341 (33%), Gaps = 23/341 (6%) Query: 7 LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHE---STFIPAYMSALTGSTPKREYINS 63 LPP + R+ Y G+ L S I A + L+ + + Sbjct: 12 LPPNLY---IRNNGYYCYRDPRTGKEFGLGRDRRIAVSEAIQANIELLSENRRESLIDRI 68 Query: 64 PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123 TL + Y + + + + S I RK D I+TK + + + Sbjct: 69 KGADVITLHAWLDRYETILSERGIRPKTLLDYASKIRAIRRKLPDKPLADISTKEVAAML 128 Query: 124 ESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 + + +SA +++ +F+ A+ + +VA NP + K + R E ++ Sbjct: 129 NTYVAEGKAASAKLIRSTLVDVFREAIAEGHVATNPVTATRTAKSEVRRSRLTANEYVEI 188 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241 + + RLA + + +G R D CR + +N I+ KTG + + L Sbjct: 189 YHAAEPLPIWLRLAMDLAVVTGQRVGDLCRMKWSDINDNHLHIEQGKTGAKLAIPLTLRI 248 Query: 242 MKL---------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-----NKSAH 287 L G ET + + ++ S +F +G+ + H Sbjct: 249 DALNISLADTLQKCRKASGSETIIASTHHEPLSPKTVSKYFTKARNASGLSFDGDPPTFH 308 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 +R + G K+ A Y R Sbjct: 309 ELR-SLSARLYRNQIGDKFAQRLLGHKSDSMAARYRDSRGR 348 >gi|157265417|ref|YP_001467975.1| phage XerD-like integrase [Thermus phage P74-26] gi|156905312|gb|ABU96955.1| phage XerD-like integrase [Thermus phage P74-26] Length = 327 Score = 132 bits (333), Expect = 6e-29, Method: Composition-based stats. Identities = 49/290 (16%), Positives = 97/290 (33%), Gaps = 14/290 (4%) Query: 67 KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126 + T++ + E+ K + +ES ++++ +T + ++ Sbjct: 39 EAMTIEQALKEFLKEKRLEGKREKTLRWYESTVRYLLKEHLHKPLDALTRNLVVEVLDKP 98 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + A ++R W + EY+ NP +RPK + T ++++ Sbjct: 99 VAPATLANYD-RALRGFVNWLIGVEYLEHNPFKGRKRPKEEFYLKDVLTLDEIKALFKAA 157 Query: 187 SEGSQPR----LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG-- 240 + R L SGLR ++ CR V + + +++ V + Sbjct: 158 MRDPRYRYRNASILALALGSGLRAAEICRLQVADILWDEMAVRVHGKTGHGVVPVTRETL 217 Query: 241 --FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATI 296 L + + + + + S W K +A AG+NK H +R AT Sbjct: 218 RYLRLYLDRERKATSPYLFVHRNRPLTSEVLSHWIKRQAKVAGINKKVGMHLLRHTFATN 277 Query: 297 SADAGATAHELMATYGWKTVDQAETYTK--GAD-RIRLGIKNSRRISSVV 343 +G L K+ Y AD R RL + ++ Sbjct: 278 YLKSGGDPFTLQRILRHKSPAMTSRYLHFLTADLRERLEPIDLVSLARKR 327 >gi|159901208|ref|YP_001547455.1| integrase family protein [Herpetosiphon aurantiacus ATCC 23779] gi|254799344|sp|A9B1E0|XERC_HERA2 RecName: Full=Tyrosine recombinase xerC gi|159894247|gb|ABX07327.1| integrase family protein [Herpetosiphon aurantiacus ATCC 23779] Length = 306 Score = 132 bits (333), Expect = 6e-29, Method: Composition-based stats. Identities = 44/278 (15%), Positives = 104/278 (37%), Gaps = 24/278 (8%) Query: 85 GSLAVNSRISFESYFDQ-----IIRKSGD-FDYRKITTKHIRSGVESRKHTPSSAIQFLT 138 L N+ ++ + DQ + R +G + + ++ +++ S+ + Sbjct: 16 RGLTGNTIAAYRTDLDQFVNFIVERNTGSWSNVSRDDLLAFLLFLKEKRYATSTIARRTA 75 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-----SEGSQPR 193 +++ F++ Q + NP +++ PK + T + + EG + + Sbjct: 76 AIKSFFEYLQGQHSITTNPTENLDSPKVDRFLPKAITVAQVDELLELPLTTSGPEGLRDK 135 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVEL-------PDGFMKLL 245 E L +G+R S+ V + I I+ K + + + ++ + Sbjct: 136 AMLEVLYATGMRVSELVALDVGDVDLAIHQIRCLGKANKERNLPIVGSASTALEEYLDIA 195 Query: 246 AMTPI---GKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAG 301 G F+N+ +++ F + K A + G+ + + H +R AT + G Sbjct: 196 RGQISRNGGDPALFLNHRGKRLTRQGFWLILKGYAERLGLSDLTPHTLRHSFATHMLNRG 255 Query: 302 ATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKNSRR 338 E+ G ++ + YT + DR + ++R Sbjct: 256 KDLREVQELLGHASISTTQIYTHVSNDRAVKYDQAAQR 293 >gi|237732945|ref|ZP_04563426.1| site-specific tyrosine recombinase xerD [Mollicutes bacterium D7] gi|229384014|gb|EEO34105.1| site-specific tyrosine recombinase xerD [Coprobacillus sp. D7] Length = 302 Score = 132 bits (333), Expect = 6e-29, Method: Composition-based stats. Identities = 53/282 (18%), Positives = 100/282 (35%), Gaps = 23/282 (8%) Query: 71 LKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDF----DYRKITTKHIRSGVES 125 +K +SEY++ L+ N+ S+ G+ I +HI ++ Sbjct: 3 IKDALSEYKQYLIVEKGLSKNTIYSYLRDLIAFSNFIGEEYEINQIENINKEHIHLYLKE 62 Query: 126 RKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM---- 179 T +S + L S+R+L+ + V++ V N S PKR + ++E+M Sbjct: 63 LSKTNCTNSISRKLVSLRMLYIFLVKENIVKENLMSSFTLPKRDKKLPIILSQEEMIEIL 122 Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELP 238 + S+ R E L +G+R S+ ++ L + IK K + + Sbjct: 123 DGIIVCDAISSRNRCMVELLYATGMRISELLNLTLKDLNIKMGFIKVIGKGNKERMIPIG 182 Query: 239 DGFMKLLAMTPIG---------KETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAH 287 ++L F N Q+++ +F + + K S H Sbjct: 183 SYVGEILEQYINDYRAEFNIKNDSLLFFNKHGQRLSREEFYSILQTIVNSTSITKKVSPH 242 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 R AT + GA + G + YT +++ Sbjct: 243 TFRHTFATHLLENGADLRSIQELLGHSDISTTTIYTHISNQK 284 >gi|194432422|ref|ZP_03064709.1| integrase [Shigella dysenteriae 1012] gi|194419309|gb|EDX35391.1| integrase [Shigella dysenteriae 1012] gi|332095959|gb|EGJ00966.1| integrase [Shigella dysenteriae 155-74] Length = 357 Score = 132 bits (333), Expect = 6e-29, Method: Composition-based stats. Identities = 60/341 (17%), Positives = 111/341 (32%), Gaps = 23/341 (6%) Query: 7 LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHE---STFIPAYMSALTGSTPKREYINS 63 LPP + R+ Y G+ L + I A + L+ S + Sbjct: 12 LPPNLY---IRNNGYYCYRDPRTGKEFGLGRDRRIAITEAIQANIELLSDSGRESLIDRI 68 Query: 64 PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123 TL + Y + + + + S I RK D I+TK + + + Sbjct: 69 KGADSITLHAWLDRYETILSERGIRPKTLLDYASKIRAIRRKLPDKPLTDISTKEVAAML 128 Query: 124 ESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 + + +SA +++ +F+ A+ + +VA NP + K + R E ++ Sbjct: 129 NTYVAEGKAASAKLIRSTLVDVFREAIAEGHVATNPVTATRTAKSEVRRSRLTANEYVEI 188 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241 + + RLA + + +G R D CR + +N I+ KTG + + L Sbjct: 189 YHAAEPLPIWLRLAMDLAVITGQRVGDLCRMKWSDINDNHLHIEQGKTGAKLAIPLTLTI 248 Query: 242 MKL---------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-----NKSAH 287 L ET + ++ S +F +G+ + H Sbjct: 249 DALNISLVDTLQKCREASSSETIIASKHHDPLSPKTVSKYFTKARNASGLSFDGDPPTFH 308 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 +R + G K+ A Y R Sbjct: 309 ELR-SLSARLYRNQIGDKFAQRLLGHKSDSMAARYRDSRGR 348 >gi|78043985|ref|YP_361456.1| phage integrase family site specific recombinase [Carboxydothermus hydrogenoformans Z-2901] gi|77996100|gb|ABB14999.1| site-specific recombinase, phage integrase family [Carboxydothermus hydrogenoformans Z-2901] Length = 312 Score = 132 bits (333), Expect = 6e-29, Method: Composition-based stats. Identities = 45/282 (15%), Positives = 96/282 (34%), Gaps = 16/282 (5%) Query: 58 REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK 117 + I + L L E+ + LA + + + ++ + +G + + Sbjct: 2 PKPIPFKKSLEVNLSQLKEEFLIARQADGLAPRTLEDYRWHIEKFMELTG-ANPTYEAVR 60 Query: 118 HIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177 S +P L ++ F W VR+ Y+ NP + + K +R + E Sbjct: 61 KAILQHLSEPSSPRYRNIKLQYLKAFFNWCVREGYLPANPTDGIRKAKEDISNVRHVSIE 120 Query: 178 DMQQFKSFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIK--TQKT 229 +++ + G + + +G R S+ + L ++ KT Sbjct: 121 AVKKLLAQPDKKTYAGLRDYCLMLVQIDTGARPSELLQIKPDDLNLDAREIYVRADVAKT 180 Query: 230 GTIITVELPD----GFMKLLAMTPI---GKETFFINNDKQKMNATQFSIWFKAKATKAGV 282 T+ + M+ L + P + F + + +++ A ++S K +AGV Sbjct: 181 RIGRTLVISPFTVQALMRFLKIRPSWWSNEVPLFASENGRQLTAQRWSRIVKRYCEEAGV 240 Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 + +G+R A G L G + Y + Sbjct: 241 KVTPYGLRHTFAIEFLKGGGDPFSLQRILGHTDLTMTRRYVR 282 >gi|46446417|ref|YP_007782.1| XerD protein [Candidatus Protochlamydia amoebophila UWE25] gi|46400058|emb|CAF23507.1| probable XerD protein [Candidatus Protochlamydia amoebophila UWE25] Length = 291 Score = 132 bits (333), Expect = 6e-29, Method: Composition-based stats. Identities = 50/274 (18%), Positives = 97/274 (35%), Gaps = 24/274 (8%) Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP------S 131 Y S LA N+ ++ + H+++ ++ + Sbjct: 11 YLASE--KGLAQNTLEAYRRDLFSFATFLKQRSVNNWSQIHLQAIIDYLALKQQQHYASA 68 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE--- 188 S + L +++VLF++ R+ + N L +E PK + E++ + + + Sbjct: 69 SICRALIAIKVLFRFLKREGMITTNILLLMETPKLWQLIPDVLSLEEIDRILAIPNIQTW 128 Query: 189 -GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM 247 G++ + E L GLR S+ C+ + + + + K G V + + + Sbjct: 129 RGARDKAILETLYACGLRVSELCQLKIYDVDDTFVRV-LGKGGKERIVPIGQQAIAAIDG 187 Query: 248 TPI--------GKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATIS 297 E FI + + K A +A + KS H R AT Sbjct: 188 YLSFREGGENSRNEFLFITKKSKPLTRALVWKLVKFYARQASIFKSISPHTFRHTFATHL 247 Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 D GA + G +++ + YT +IRL Sbjct: 248 LDHGADLRVIQDMLGHASINSTDRYTH-VSQIRL 280 >gi|34222917|sp|Q8PGR5|XERD_XANAC RecName: Full=Tyrosine recombinase xerD gi|21109924|gb|AAM38394.1| integrase-recombinase XerD [Xanthomonas axonopodis pv. citri str. 306] Length = 305 Score = 132 bits (333), Expect = 6e-29, Method: Composition-based stats. Identities = 45/273 (16%), Positives = 91/273 (33%), Gaps = 29/273 (10%) Query: 85 GSLAVNSRISFESYFDQIIR-----KSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139 +A + S+ + + R G + ++P S + L++ Sbjct: 20 QGVARQTLESYRRDLEGLARWRDGAGGGLLGIDRAALFDYLRWRTRANYSPRSTARLLST 79 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195 +R + +R + +P ++ P + T+ ++ + G + R Sbjct: 80 LRAFYGLCLRDGARSDDPTALIDPPHLPRSLPKALTESQIEALLAAPDLDTPAGLRDRAM 139 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-ITVELPDG--------FMKLLA 246 E + +GLR S+ + ++ G+ V L + + Sbjct: 140 LELMYAAGLRVSELVNLPAVGVNLRQGVLRVTGKGSKDRLVPLGEESQHWLERYLREARP 199 Query: 247 MTPIGKET--------FFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSAT 295 + K FI+ +Q ++ QF K A AG++ S HG+R AT Sbjct: 200 LLAANKPVAAVDGQVPLFIDVSRQPLSRQQFWALVKRYAAVAGIDPATVSPHGLRHSFAT 259 Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADR 328 + GA L G ++ + YT A + Sbjct: 260 HLLNHGADLRALQMLLGHSSLSTTQIYTLVARQ 292 >gi|296117987|ref|ZP_06836570.1| tyrosine recombinase XerD [Corynebacterium ammoniagenes DSM 20306] gi|295969218|gb|EFG82460.1| tyrosine recombinase XerD [Corynebacterium ammoniagenes DSM 20306] Length = 322 Score = 132 bits (333), Expect = 6e-29, Method: Composition-based stats. Identities = 50/309 (16%), Positives = 99/309 (32%), Gaps = 29/309 (9%) Query: 50 ALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF 109 A + +P WL + + N R + Y + + Sbjct: 5 AKASKSKIDHAEPAPELVSVAQGWLDHLAVEKGASKNTVSNYRRDLKRYVSWL-TTANIS 63 Query: 110 DYRKITTKHIRSGVESRKHTP--------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSV 161 ++++ H+ S V + +S + L R L K+A+ + + ++ V Sbjct: 64 TLSEVSSHHVESYVADLRRGWDGQKPLSSASTSRALIVARGLHKFALSEGLIDVDVAAEV 123 Query: 162 ERPKRKTEGIRPWTKEDMQQFKSFWSEGS-------QPRLAFEFLLYSGLRCSDSCRAGV 214 P + +++ + G + + E L +G R S+ V Sbjct: 124 APPSPGKHLPDSLSIDEVTRLIDSVPAGEVATAVDIRDKALLEMLYGTGARVSELLDLAV 183 Query: 215 QHLQNN-IFSIKTQKTGTIITVEL--------PDGFMKLLAMTPIGKET-FFINNDKQKM 264 + ++ T K V L + ++ GK F+N + + Sbjct: 184 DDVADSPEILTVTGKGSKQRLVPLGSHARTAIEEYLVRARPQLSRGKSHALFLNTLGKPL 243 Query: 265 NATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 + + +AG++K S H +R AT GA + G +V + Y Sbjct: 244 SRQSAWAVIQQAVQRAGLDKKVSPHTLRHSFATHLLQGGADVRTVQELLGHSSVTTTQIY 303 Query: 323 TK-GADRIR 330 T AD +R Sbjct: 304 THVTADSLR 312 >gi|223985629|ref|ZP_03635679.1| hypothetical protein HOLDEFILI_02985 [Holdemania filiformis DSM 12042] gi|223962396|gb|EEF66858.1| hypothetical protein HOLDEFILI_02985 [Holdemania filiformis DSM 12042] Length = 323 Score = 132 bits (333), Expect = 6e-29, Method: Composition-based stats. Identities = 44/277 (15%), Positives = 82/277 (29%), Gaps = 28/277 (10%) Query: 88 AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE-----------SRKHTPSSAIQF 136 + + S+ ++ + + + K + SS + Sbjct: 33 SPATADSYGRDLERFAAYLAEKKITDFSQVDKAVMFDYVTLLRSGKITRCKISDSSFSRM 92 Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----QQFKSFWSEGSQP 192 L+++R + + +R + V +NP + PK T + M F + Sbjct: 93 LSTLRSFYHYLIRYKGVKVNPTRGLRAPKLNRTIPEFLTFDQMMTLFDSFDLNDPAALRN 152 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIG 251 R E + GLR S+ C + L N T K V LL Sbjct: 153 RAILETMYACGLRVSEVCSLTLAELDLNERILTVTGKGDKQRIVPFYKRLRTLLTRYLRD 212 Query: 252 KETF---------FINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADA 300 F++ + + AG+N H +R AT D Sbjct: 213 SRALYLKEEHGFVFVSQRGAPITPRAVQLILAQAGQDAGLNQPLHPHILRHSFATHLLDN 272 Query: 301 GATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNS 336 G + G ++ + YT DR++ + + Sbjct: 273 GVDLRTVQELLGHSSLSTTQIYTHVTVDRLKQSVDAA 309 >gi|168186262|ref|ZP_02620897.1| tyrosine recombinase XerD [Clostridium botulinum C str. Eklund] gi|169295813|gb|EDS77946.1| tyrosine recombinase XerD [Clostridium botulinum C str. Eklund] Length = 292 Score = 132 bits (333), Expect = 6e-29, Method: Composition-based stats. Identities = 47/278 (16%), Positives = 102/278 (36%), Gaps = 20/278 (7%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQI-----IRKSGDFDYRKITTKHIRSGVESRKH 128 + +Y + L+ N+ ++ + R + ++ ++ K Sbjct: 4 YLRQYIEDMRKKELSKNTIEAYNRDIIKFGKFLKERDENILNADMVSIMAYVQTLKKEKK 63 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS- 187 SS I+ + S+R +K+ +R NP ++ E PK K T +++++F + Sbjct: 64 ADSSIIRSIVSIRNFYKYLIRIGKDVDNPLINYEVPKNKRNIPEVLTIDEVEKFLNAPEC 123 Query: 188 ---EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK-TGTIITVE------- 236 +G + + E + +G++ S+ R + + + +K + + Sbjct: 124 NEYKGIRDKAMLELMYATGMKVSELLRVTIFDINLKLCYVKCRGAKDKERIIPIGSYAVN 183 Query: 237 -LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFS 293 L + M+ E F N KM F K A +AG+NK + +R Sbjct: 184 CLNEYLNVRDKMSAANSEILFCNLRGGKMTRQGFWKIVKKYAKEAGINKKIDSYTLRHSF 243 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 A GA + G T+ + Y+ + + ++ Sbjct: 244 AVHLLQNGADIKSVQELLGHNTIATTQIYSSISKQNKI 281 >gi|320161519|ref|YP_004174743.1| putative site-specific recombinase [Anaerolinea thermophila UNI-1] gi|319995372|dbj|BAJ64143.1| putative site-specific recombinase [Anaerolinea thermophila UNI-1] Length = 300 Score = 132 bits (333), Expect = 6e-29, Method: Composition-based stats. Identities = 52/280 (18%), Positives = 100/280 (35%), Gaps = 24/280 (8%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130 L + I E+ + L+ + + +E+ + R+ GDFD I K I + S + Sbjct: 4 LSYCIDEFLEFKRAQRLSRWTLLDYETVLRRFNREIGDFDIDHIERKTIAHYLASLDLSK 63 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----------- 179 T++ L+ WAV Y ++ ++ PK + I P+T++ + Sbjct: 64 KRVKNIYTALSSLWTWAVEMGYCTVHIIRQIKPPKPEKRPILPFTRDQIMNMLASTDASK 123 Query: 180 -------QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232 + ++ G + R LL +G+R S+ C V+ ++ + I K Sbjct: 124 EYTRPGKRACRNRLKTGVRDRAIILLLLDTGIRASELCGIKVKDIKPHGIYIH-GKGSKD 182 Query: 233 ITVELPD----GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAH 287 V + + + ++ F ++ + + +AGV + H Sbjct: 183 RLVPISETTRSALCDYIGEQKDIEKYVFKTEQGNVLSRDALRLIIRRIGDRAGVNDAHPH 242 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 R A G L A G +T+D Y A Sbjct: 243 RFRHTFAINFLRNGGDVFTLQAILGHETLDMVRRYLAIAQ 282 >gi|110639086|ref|YP_679295.1| site-specific recombinase [Cytophaga hutchinsonii ATCC 33406] gi|110281767|gb|ABG59953.1| site-specific recombinase [Cytophaga hutchinsonii ATCC 33406] Length = 299 Score = 132 bits (333), Expect = 7e-29, Method: Composition-based stats. Identities = 50/281 (17%), Positives = 95/281 (33%), Gaps = 28/281 (9%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFES-------YFDQIIRKSGDFDYRKITTKHIRSG 122 K LI ++R SL+ NS ++E + + G + + Sbjct: 3 WKILIRQFRDYLKLERSLSGNSVEAYEHDVIKFMQFLELTEPSVGPLQVKGKHIQLFLEY 62 Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 + + S + L+ ++ F++ + +E +P ++ PK + + +++Q Sbjct: 63 ITELGMSAYSQARILSGIKSFFRFLLMEEIRDEDPSSLIDSPKLGRKLPDTLSFPEIEQI 122 Query: 183 KSF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH--LQNNIFSIKTQKTGTIITVE 236 EG + R E L GLR S+ + + + + K V Sbjct: 123 LLAIDLSTPEGMRNRAMLETLYSCGLRVSELTDLKISNLFFDDGFVKV-LGKGNKERLVP 181 Query: 237 LPDGFMK-----------LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284 + K L + + F+N K++ K A K G+ K Sbjct: 182 IGRDARKYIGMYRNEVRCHLDIVKGAENYVFLNRRGNKLSRVMVFTIIKNLAVKIGLKKT 241 Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 S H R AT + GA + G +++ E YT Sbjct: 242 VSPHTFRHSFATHLIEGGADLRAVQEMLGHESITTTEIYTH 282 >gi|121608682|ref|YP_996489.1| tyrosine recombinase XerD [Verminephrobacter eiseniae EF01-2] gi|121553322|gb|ABM57471.1| tyrosine recombinase XerD [Verminephrobacter eiseniae EF01-2] Length = 303 Score = 132 bits (333), Expect = 7e-29, Method: Composition-based stats. Identities = 53/284 (18%), Positives = 95/284 (33%), Gaps = 21/284 (7%) Query: 68 PTTLKWLISE-YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126 P + + + + + R Y + + H+++ +R Sbjct: 4 PDAIDAFLDALWLEDGLARNTLAAYRSDLTRYAQWLHAQQPAVALDDTAEHHLQAYFAAR 63 Query: 127 --KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 + +SA + LT +R F WA+R+ ++ +P + + + T+ ++ Sbjct: 64 HAQTRATSANRRLTVLRRYFHWALRERRISADPTARLAAARVPLRVPKTMTETQVEALLQ 123 Query: 185 FWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVE--- 236 G+ + R E + SGLR ++ HL + T K G + Sbjct: 124 APDPGTPLGLRDRAMLELMYASGLRVTELVGLKTFHLALDENLLRVTGKGGKERLLPFGV 183 Query: 237 -----LPDGFMKLLAMTPIGKET--FFINNDKQKMNATQFSIWFKAKATKAGV--NKSAH 287 L + + G+ T F+ M F I K A AG+ S H Sbjct: 184 EAGQWLERYLQQARGVILGGQRTDDLFVTRRGCGMTRVMFWIIVKQWARVAGITVPLSPH 243 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 +R AT + GA + G + YT A R RL Sbjct: 244 TLRHAFATHLLNHGADLRVVQLLLGHADISTTTIYTHVA-RQRL 286 >gi|227496090|ref|ZP_03926396.1| tyrosine recombinase [Actinomyces urogenitalis DSM 15434] gi|226834324|gb|EEH66707.1| tyrosine recombinase [Actinomyces urogenitalis DSM 15434] Length = 316 Score = 132 bits (332), Expect = 7e-29, Method: Composition-based stats. Identities = 49/272 (18%), Positives = 94/272 (34%), Gaps = 32/272 (11%) Query: 85 GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVES--------RKHTPSSA 133 L+ N+ ++E + R G D +T + + +E+ R SSA Sbjct: 26 RGLSPNTLAAYERDLTRYCRFLLARGVQDLAAVTEADVAAFLEAIRTGDDGGRALAASSA 85 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-----SE 188 + +T++R K+ + + ++P +V P+ + + E++Q Sbjct: 86 SRTVTAVRGWHKFLLDEGNTDVDPSAAVHPPQVGRRLPKALSVEEVQALLEAASTDDSPR 145 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVEL---------- 237 + R E L +G R S++ + L I+ K V + Sbjct: 146 SLRDRALLELLYATGARISEAVGLVIDDLDRESGCIRLFGKGRKERIVPVGQYAWDALDA 205 Query: 238 -PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK----SAHGVRKF 292 +LA G F+N + ++ + + +AG+ S H +R Sbjct: 206 YLVQARPVLAAKGRGVPEVFLNTLGRPLSRQSAWGVLRQASARAGLGADKHVSPHTLRHS 265 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTK 324 AT GA + G +V + YTK Sbjct: 266 FATHLLAGGADVRVVQEMLGHASVTTTQIYTK 297 >gi|319405344|emb|CBI78962.1| phage-related integrase/recombinase (fragment) [Bartonella sp. AR 15-3] Length = 140 Score = 132 bits (332), Expect = 7e-29, Method: Composition-based stats. Identities = 39/127 (30%), Positives = 70/127 (55%), Gaps = 2/127 (1%) Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT--GTIIT 234 ED+ Q+ W+ + R+ + LLY+GLR D+ R + +++NI +KT+K+ T + Sbjct: 4 EDIDQYYHCWAHATHERVWIDVLLYTGLRRDDAVRIAWKCVKDNIIHLKTEKSQFKTDVF 63 Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSA 294 + + + L + PIG ETF + +++ F F+ A + KSAHG+RK +A Sbjct: 64 LSILPKLAETLKIGPIGNETFIRSKGNKQLTKESFGKLFRGACNIASIKKSAHGLRKLAA 123 Query: 295 TISADAG 301 T + ++G Sbjct: 124 TSAENSG 130 >gi|225025733|ref|ZP_03714925.1| hypothetical protein EIKCOROL_02637 [Eikenella corrodens ATCC 23834] gi|224941514|gb|EEG22723.1| hypothetical protein EIKCOROL_02637 [Eikenella corrodens ATCC 23834] Length = 301 Score = 132 bits (332), Expect = 8e-29, Method: Composition-based stats. Identities = 46/265 (17%), Positives = 99/265 (37%), Gaps = 22/265 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRV 142 LA N+ + +++ R+ D+++ + + V + P+S ++ L++++ Sbjct: 27 RRLAANTLAGYRRDLEKVARRLHAQGLDWQQADADALANAVYAPDEKPASQVRALSAVKQ 86 Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRLAFEF 198 L+ + Q + NP + P++ + + + G + + E Sbjct: 87 LYGFLQLQNRRSDNPAQHLRPPRQGRALPPLIGEAQIDALLAAPDTETIFGLRDKAVLET 146 Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-------------ELPDGFMKLL 245 L +GLR S++ + +Q L + G + L +LL Sbjct: 147 LYATGLRVSEAAQMQLQDLDLQRGVVTVIGKGNKQRIVPLGAEAVYWLERYLKTARGELL 206 Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATA 304 TP + F+ + ++ K A +AG+ S HG+R AT + GA Sbjct: 207 KHTP--CDFVFVGQKRSGISRQLVWQMVKRYAAEAGISELSPHGLRHAFATHLVNHGADL 264 Query: 305 HELMATYGWKTVDQAETYTKGADRI 329 + G +++ + YT A+ Sbjct: 265 RSVQMMLGHASLNTTQIYTHVANER 289 >gi|134298831|ref|YP_001112327.1| phage integrase family protein [Desulfotomaculum reducens MI-1] gi|134051531|gb|ABO49502.1| phage integrase family protein [Desulfotomaculum reducens MI-1] Length = 324 Score = 132 bits (332), Expect = 8e-29, Method: Composition-based stats. Identities = 42/269 (15%), Positives = 97/269 (36%), Gaps = 16/269 (5%) Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFL 137 + S L+ + + + + ++ITT IR+ + +R S+ L Sbjct: 55 FLLSKKMEGLSEKTIDKYRKTILDFAKYV-NKPLKRITTADIRTWLSNRDIKISTVRYRL 113 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFE 197 +R + + + +E VA++P ++ PK + + ++++ + + + + E Sbjct: 114 AVLRSFYNYLLAEEIVAVDPTRRIKSPKLEKRIPKALNNDELEVLREGCNT-LREKALLE 172 Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFS---IKTQKTGTIITVELPDG----FMKLLAMTPI 250 +G R + G + N + K V + K L Sbjct: 173 IFYATGCRIGEV--FGANKIDINWQERSLVVLGKGNKERIVFIGARAAHSLKKYLNSRQD 230 Query: 251 GKETFFINNDKQ--KMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHE 306 ++ F+ + +++ + FK A + ++K+ H R AT + GA + Sbjct: 231 NEDALFVTEKGKIQRLSVRSIQLIFKKIANRVVIHKNIYPHIFRHTLATALLNHGARLED 290 Query: 307 LMATYGWKTVDQAETYTKGA-DRIRLGIK 334 + G + Y K + +R +L Sbjct: 291 VQDLLGHTNPSTTQIYCKVSPERKKLAYN 319 >gi|251773301|gb|EES53851.1| phage integrase family protein [Leptospirillum ferrodiazotrophum] Length = 347 Score = 132 bits (332), Expect = 8e-29, Method: Composition-based stats. Identities = 57/338 (16%), Positives = 119/338 (35%), Gaps = 14/338 (4%) Query: 17 RHGKIIY-YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75 + G + + F + R E + G + ++ + + TL L Sbjct: 5 KRGALWWMRFSVQGKQIRRSTGTSERKLADKVYKKVLGEIAEGDWFDRLPGEEKTLSELF 64 Query: 76 SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK---HIRSGVESRKHTPSS 132 +Y + + + S I ++ +++++ GD +I T+ + P+S Sbjct: 65 DKYLEEHSKPNKSSKSYIRDKAISLRMLKEFGDVTLIEIGTEQIFDYKKKRREENLAPAS 124 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192 + + +R F+ AV ++ +NP + R K K R T E+ ++ E + Sbjct: 125 LNKEIAFLRHAFEMAVLWGWLEVNPVSRIPREKVKNRMERWLTGEEEERLLKACPEWLRD 184 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQKTGTIITVELP----DGFMKLLA 246 + F L +G R ++ QK TV + D ++ Sbjct: 185 MVIF--ALNTGFRQNEMLSLTWNQVDWDRKAILFWDQKNNGRDTVPVNEKAIDVLKRIGK 242 Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAH 305 + + F+ ++ A F KA + N H +R AT AG + Sbjct: 243 VKSLSSGHVFLTSNGTPFIARNVVRSFSLALEKAKITNFRWHDLRHTFATRLVHAGVDLY 302 Query: 306 ELMATYGWKTVDQAETYT-KGADRIRLGIKNSRRISSV 342 + W+++ Y + +R G++ R++S Sbjct: 303 TVQRLGRWRSLSMVMRYAHHNLESLRTGMEAVNRLAST 340 >gi|73748515|ref|YP_307754.1| tyrosine recombinase XerC [Dehalococcoides sp. CBDB1] gi|147669296|ref|YP_001214114.1| tyrosine recombinase XerC subunit [Dehalococcoides sp. BAV1] gi|289432563|ref|YP_003462436.1| tyrosine recombinase XerC [Dehalococcoides sp. GT] gi|73660231|emb|CAI82838.1| tyrosine recombinase XerC [Dehalococcoides sp. CBDB1] gi|146270244|gb|ABQ17236.1| tyrosine recombinase XerC subunit [Dehalococcoides sp. BAV1] gi|288946283|gb|ADC73980.1| tyrosine recombinase XerC [Dehalococcoides sp. GT] Length = 307 Score = 132 bits (332), Expect = 8e-29, Method: Composition-based stats. Identities = 40/285 (14%), Positives = 98/285 (34%), Gaps = 24/285 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE------SRKHTPSSAIQFLT 138 +++ + ++ + + + + ++ S + L+ Sbjct: 16 KNVSPYTLRNYRTDLIGFVNYLIEKKVSSFDRVDRYILRDYMSSLIAKGIVKGSIARKLS 75 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRL 194 ++R +++ +R+ + NP L+ P+ T ++ + +G + + Sbjct: 76 AVRSFYRYLMREGLIQKNPTLNASSPRLDKRLPEFLTVTEVNKLLRVPDSSTPQGLRDKA 135 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT--IITVELPDGFMKL-------- 244 E L SGLR S+ + ++++ + I+ G+ + + + Sbjct: 136 FMELLYASGLRVSELVKLDIENMDLHSHQIRVWGKGSKERVVLAGLPAIQSIQNYLNLGR 195 Query: 245 -LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAG 301 L F+N +++A F A +AG+ K H +R AT D G Sbjct: 196 PLLKGKRNTPALFLNPTGGRLSARSFQERLDKLAKQAGIEKHVHPHMLRHTFATHLLDGG 255 Query: 302 ATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNSRRISSVVDS 345 A + G + + YT + R +S ++ ++ Sbjct: 256 ADLRVVQELLGHSNLSTTQIYTHVTKSQARKVYMSSHPLARPQNN 300 >gi|157265299|ref|YP_001467858.1| XerD-like integrase [Thermus phage P23-45] gi|156905194|gb|ABU96838.1| XerD-like integrase [Thermus phage P23-45] Length = 327 Score = 132 bits (332), Expect = 8e-29, Method: Composition-based stats. Identities = 49/290 (16%), Positives = 98/290 (33%), Gaps = 14/290 (4%) Query: 67 KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126 + T++ + E+ K + +ES ++++ + +T + ++ Sbjct: 39 EAMTIEQALKEFLKEKRLEGKREKTLRWYESTVRYLLKEHLNKPLDALTRNLVVEVLDKP 98 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + A ++R W + EY+ NP +RPK + T ++++ Sbjct: 99 VAPATLANYD-RALRGFVNWLIGVEYLEHNPFKGRKRPKEEFYLKDVLTLDEIKALFKAA 157 Query: 187 SEGSQPR----LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG-- 240 + R L SGLR ++ CR V + + +++ V + Sbjct: 158 MRDPRYRYRNASILALALGSGLRAAEICRLQVADILWDEMAVRVHGKTGHGVVPVTRETL 217 Query: 241 --FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATI 296 L + + + + + S W K +A AG+NK H +R AT Sbjct: 218 RYLRLYLDRERKATSPYLFVHRNRPLTSEVLSHWIKRQAKVAGINKKVGMHLLRHTFATN 277 Query: 297 SADAGATAHELMATYGWKTVDQAETYTK--GAD-RIRLGIKNSRRISSVV 343 +G L K+ Y AD R RL + ++ Sbjct: 278 YLKSGGDPFTLQRILRHKSPAMTSRYLHFLTADLRERLEPIDLVSLARKR 327 >gi|222053854|ref|YP_002536216.1| tyrosine recombinase XerC [Geobacter sp. FRC-32] gi|221563143|gb|ACM19115.1| tyrosine recombinase XerC [Geobacter sp. FRC-32] Length = 294 Score = 132 bits (332), Expect = 9e-29, Method: Composition-based stats. Identities = 52/274 (18%), Positives = 105/274 (38%), Gaps = 22/274 (8%) Query: 72 KWLISEYRKS-AHWGSLAVNSRISFES-------YFDQIIRKSGDFDYRKITTKHIRSGV 123 K LI ++ + A +++ ++ + S + D+ ++ + + +G+ Sbjct: 2 KKLIDQFCRYLAIERNVSPHTVAGYRSDLTFFLSFLDREKVQADVGSISHLLIRRYIAGL 61 Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM---- 179 H SS + L ++R LFK+ +RQ V+ NP V PK++ + T +++ Sbjct: 62 YKD-HQKSSIGRQLAAIRALFKYLLRQGLVSKNPAELVSTPKKEKKIPYHLTIDEVTTLV 120 Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVEL- 237 + + + R E L G+R S+ V ++ N I+ K V + Sbjct: 121 EAPQQEDLLSLRDRAILELLYSCGIRVSELTALNVGEVEMNERLIRVCGKGNKERIVPIG 180 Query: 238 ---PDGFMKLLAM--TPIGKETFFINNDKQKMNATQFSIWFKAKATK-AGVNK-SAHGVR 290 + L+ TP + +N ++ + + K A + K S H +R Sbjct: 181 RKALEALADYLSARNTPPEEAPLILNARGTRLTSRSVARIVDRYIVKIATMKKISPHTLR 240 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK 324 AT + GA + G ++ + YT Sbjct: 241 HTFATHMLEGGADLRAIQELLGHASLSTTQKYTH 274 >gi|257056527|ref|YP_003134359.1| tyrosine recombinase XerD subunit [Saccharomonospora viridis DSM 43017] gi|256586399|gb|ACU97532.1| tyrosine recombinase XerD subunit [Saccharomonospora viridis DSM 43017] Length = 311 Score = 132 bits (332), Expect = 9e-29, Method: Composition-based stats. Identities = 49/261 (18%), Positives = 89/261 (34%), Gaps = 27/261 (10%) Query: 89 VNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT--------PSSAIQFLTSM 140 Y + +G D R++ H+ S +H PSSA + L+++ Sbjct: 32 DGYARDLRRYLAHLAD-AGVTDLRQVARDHVVGFAASLRHGEGDRPPLAPSSAARALSAV 90 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAF 196 R L ++A + + +P V P + D+ + + + + R Sbjct: 91 RGLHRFAHAEGWTEEDPARDVRPPPLTRRLPKALPVADVLRLLNTPTGDDARSLRDRALL 150 Query: 197 EFLLYSGLRCSDSCRAGVQHLQN-NIFSIKTQKTGTIITVELPDGFMKLL---------- 245 E L +G R S++ V + + K G V + ++ L Sbjct: 151 ELLYSTGARISEATGLDVDDVDRAERTVVLDGKGGRQRLVPVGRPALEALDAYLIRARPA 210 Query: 246 -AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGA 302 A G F+N +++ K A +AG+ S H +R AT + GA Sbjct: 211 LAAKGRGTGAVFLNARGGRLSRQGAWQVLKVAAERAGISTPVSPHTLRHSFATHLLEGGA 270 Query: 303 TAHELMATYGWKTVDQAETYT 323 + G +V + YT Sbjct: 271 DVRVVQELLGHASVTTTQVYT 291 >gi|183221728|ref|YP_001839724.1| tyrosine recombinase xerD [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189911803|ref|YP_001963358.1| site-specific recombinase XerD [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167776479|gb|ABZ94780.1| Site-specific recombinase XerD [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167780150|gb|ABZ98448.1| Tyrosine recombinase xerD [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 302 Score = 132 bits (331), Expect = 9e-29, Method: Composition-based stats. Identities = 44/266 (16%), Positives = 98/266 (36%), Gaps = 22/266 (8%) Query: 85 GSLAVNSRISFESYFDQ--IIRKSGDFDYRKITTKHIRSGVES---RKHTPSSAIQFLTS 139 L+ NS S+ ++ I + ++ ++ I +E RK + + + + + Sbjct: 24 KGLSDNSIYSYGYDLNKFAIFLEKEHINFLEVKANDIMRFLEEERERKISAKTLAREVVA 83 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRLA 195 +R +K+ ++ + NP +E P+ T+ ++++ E + + Sbjct: 84 IRQFYKYLRDEKRLDSNPTEKIETPEVARTIPDYLTQAEIEELFRNIKEDNLYELRDKCI 143 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-KTGTIITVELPDGFMKLLAMTPIGKET 254 FE L SGLR S++C + + +I + K G V + +++L + T Sbjct: 144 FELLYSSGLRISEACNLKMTDIDMENMTITVEGKGGRQRLVPFGEKSLEILKRYLVESRT 203 Query: 255 ----------FFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302 F++ +N + + K + H +R AT + A Sbjct: 204 EILKKRTCDFVFVSKKGSYINRKSVWRLLNHYIKRTKIKKKVTPHTLRHSFATHLLENHA 263 Query: 303 TAHELMATYGWKTVDQAETYTKGADR 328 + G + + YT A++ Sbjct: 264 DLKSVQELLGHIDISTTQIYTHMANK 289 >gi|147668730|ref|YP_001213548.1| phage integrase family protein [Dehalococcoides sp. BAV1] gi|146269678|gb|ABQ16670.1| phage integrase family protein [Dehalococcoides sp. BAV1] Length = 319 Score = 132 bits (331), Expect = 9e-29, Method: Composition-based stats. Identities = 43/298 (14%), Positives = 113/298 (37%), Gaps = 16/298 (5%) Query: 44 IPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI- 102 + +Y +GS + + L ++ + + L+ ++ + + Sbjct: 1 MLSYHLTTSGSHEQPQAKTYHLTNFKNLSGRLNAFVLTCKVARLSPHTIRYYTYALNSFL 60 Query: 103 --IRKSGDFDYRKITTKHIRSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPC 158 + G +I H+R + + P+S + + +++ F W + + ++ +P Sbjct: 61 GYCQTLGINTVEEIEANHVRLYLVKLQERNNPTSVLDYYKAVKRFFNWLIEEGVLSKSPL 120 Query: 159 LSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQ 215 +++ P+ + + IRP+T++ ++ + G + + +L +GLR S+ ++ Sbjct: 121 ATIKPPRTEQKIIRPFTRQQIEDLLATCGDSPIGLRNKAMILTMLDTGLRVSEMSAIQLK 180 Query: 216 HLQNNIFSIKTQKTGTIITV-----ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFS 270 + + +I G V + + ++ L +++ ++ Sbjct: 181 DVDFDKETIIVMGKGAKQRVVRIGHKAQETILRYLLTRQDECPALWMSTTGSGLSTEGIK 240 Query: 271 IWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 + + +AG+ S H R AT + GA E+ + G T+ + YT Sbjct: 241 VVVRELGKRAGLTGVRCSPHTFRHTFATQALINGAGEFEVQSLLGHSTLVMTKRYTAS 298 >gi|307546449|ref|YP_003898928.1| site-specific tyrosine recombinase XerD [Halomonas elongata DSM 2581] gi|307218473|emb|CBV43743.1| site-specific tyrosine recombinase XerD [Halomonas elongata DSM 2581] Length = 300 Score = 132 bits (331), Expect = 9e-29, Method: Composition-based stats. Identities = 42/288 (14%), Positives = 95/288 (32%), Gaps = 25/288 (8%) Query: 72 KWLISEYRKSAHWGSL--AVNSRISFESYFDQIIRKSGDFDYRKITT--KHIRSGVESRK 127 LI + W + N+ ++ + + + + + ++ R+ Sbjct: 8 SALIDAFL-DGLWLERGASDNTLAAYRHDLNTWQARLAGLGATLLAPPPRALPDWLDERR 66 Query: 128 H---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 S + L+S+R + WA+ + + +P ++ P+ + ++++ Sbjct: 67 EAGYKLRSNARLLSSLRRFYHWALGEGRIEYDPLAEIKLPRVTPSLPNTLEEGEVERLLE 126 Query: 185 FWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPD 239 G + R E L +GLR ++ L ++ + G V L + Sbjct: 127 APDVDTELGLRDRAMLEVLYGAGLRVTELVGLTTDALNLRQGVVRVRGKGDKERLVPLGE 186 Query: 240 GFMKLLAMTPIGKETFFINNDKQK----------MNATQFSIWFKAKATKAGVNKS--AH 287 + L++ + + + + F KA A AG+++S H Sbjct: 187 EAVDWLSLYLRSARGALMRDVTRPALFPGRGDACLTRQAFWYRIKAHARSAGIDRSLSPH 246 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335 +R AT + GA + G + + YT A + Sbjct: 247 TLRHAFATHLLNHGANLRVVQLLLGHSDLSTTQIYTHVAQVRLEALHA 294 >gi|312891380|ref|ZP_07750897.1| tyrosine recombinase XerD [Mucilaginibacter paludis DSM 18603] gi|311296074|gb|EFQ73226.1| tyrosine recombinase XerD [Mucilaginibacter paludis DSM 18603] Length = 299 Score = 132 bits (331), Expect = 9e-29, Method: Composition-based stats. Identities = 52/266 (19%), Positives = 99/266 (37%), Gaps = 27/266 (10%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKI--------TTKHIRSGVESRKHTPSSAIQF 136 SL+ NS ++ D++I + D K+ + V PSS + Sbjct: 18 KSLSANSVGAYLGDLDKLI-QFADSKLIKLYPDTIGMNDLREFIMWVNELGMIPSSQARI 76 Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQP 192 ++ ++ +K+ + ++ +P +E PK + + D+ + EG + Sbjct: 77 ISGIKAFYKYLLMDNQLSYDPSELLEAPKLMRKLPDTLSIVDIDKLIDAIDLSKPEGMRN 136 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE--------LPDGFMK 243 + E L GLR ++ + +L +I IK K V L + Sbjct: 137 KTMIEVLYGCGLRVTELVNLRISNLYLDIEFIKVLGKGNKERLVPIGAQAIKFLKIWLQE 196 Query: 244 LLAMTPIG---KETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISA 298 + TP+ ++ F+N +++ + K A K G+ KS H R AT Sbjct: 197 VRVHTPVKMGEEDIVFLNRRGNRLSRVYVFMMIKELAEKIGLKKSISPHTFRHSFATHLI 256 Query: 299 DAGATAHELMATYGWKTVDQAETYTK 324 + GA + G +++ E YT Sbjct: 257 EGGADLRAVQEMLGHESITTTEIYTH 282 >gi|253997885|ref|YP_003049948.1| tyrosine recombinase XerC [Methylovorus sp. SIP3-4] gi|253984564|gb|ACT49421.1| tyrosine recombinase XerC [Methylovorus sp. SIP3-4] Length = 292 Score = 132 bits (331), Expect = 9e-29, Method: Composition-based stats. Identities = 44/270 (16%), Positives = 95/270 (35%), Gaps = 18/270 (6%) Query: 73 WLISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR---SGVESRKH 128 + +Y +H L+ +R +++ ++ +G+ + +T HIR + + R Sbjct: 3 DYLVQYLDHLSHERRLSPLTRENYQRDLRVLLELNGEVPLQNMTGTHIRRHVATLHGRNL 62 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 S + L++ R F++ +++ + NPC + PK + + Q S E Sbjct: 63 GGRSIARMLSAWRGFFEFLIQRHGFSANPCQGIRAPKSPKSLPHALSPDQAVQLVSIDDE 122 Query: 189 GS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-ELPDGFMKL 244 + + E SGLR ++ + L +I G + + M Sbjct: 123 DTLAQRDHAMLELFYSSGLRLAELVNLDLDALNLGEGTITVTGKGNKTRIVPVGQHAMNA 182 Query: 245 LAM-------TPIGK-ETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSA 294 L PI F++ ++++ + A + G+N H +R A Sbjct: 183 LQAWLAIRSGLPIQDTSALFLSRLGKRLSRRAVQYRLQQWAIRQGINIRVHPHMLRHSFA 242 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTK 324 + + + G + + YT Sbjct: 243 SHVLQSSGDLRAVQEMLGHANISTTQVYTH 272 >gi|270308039|ref|YP_003330097.1| site-specific recombinase [Dehalococcoides sp. VS] gi|270153931|gb|ACZ61769.1| site-specific recombinase [Dehalococcoides sp. VS] Length = 307 Score = 132 bits (331), Expect = 9e-29, Method: Composition-based stats. Identities = 40/264 (15%), Positives = 92/264 (34%), Gaps = 25/264 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE------SRKHTPSSAIQFLT 138 +++ + ++ + + + + ++ S + L+ Sbjct: 16 KNVSAYTLRNYRTDLIGFVNYLIEKKVSSFDRVDRYILRDYMSSLIAKGIVKGSIARKLS 75 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRL 194 ++R +++ +R+ + NP L+ P+ T ++ + +G + + Sbjct: 76 AVRSFYRYLMREGLIQKNPTLNASSPRLDKRLPEFLTTAEVSKLLRMPDSSTPQGLRDKA 135 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL---------- 244 E L SGLR S+ + +++L + I+ G+ + + G + Sbjct: 136 FMELLYASGLRVSELVKLDIENLDLHSHQIRVWGKGSKERI-VLMGLPAIQSIQTYLNLG 194 Query: 245 --LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADA 300 L F+N + +++A F A +AG+ K H +R AT D Sbjct: 195 RPLLKGKRNTPALFLNPNGGRLSARSFQERLDKLAHQAGIEKHVHPHMLRHTFATHLLDG 254 Query: 301 GATAHELMATYGWKTVDQAETYTK 324 GA + G + + YT Sbjct: 255 GADLRVVQELLGHSNLSTTQIYTH 278 >gi|289663723|ref|ZP_06485304.1| site-specific tyrosine recombinase XerD [Xanthomonas campestris pv. vasculorum NCPPB702] gi|289668605|ref|ZP_06489680.1| site-specific tyrosine recombinase XerD [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 323 Score = 132 bits (331), Expect = 1e-28, Method: Composition-based stats. Identities = 46/273 (16%), Positives = 91/273 (33%), Gaps = 29/273 (10%) Query: 85 GSLAVNSRISFESYFDQIIR-----KSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139 +A + S+ + + R G + ++P S + L++ Sbjct: 38 QGVARQTLESYRRDLEGLARWRAGAGGGLLGIDRAALFDYLRLRAKANYSPRSTARLLST 97 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195 +R + +R + +P ++ P+ + T+ ++ + G + R Sbjct: 98 LRAFYGLCLRDGMRSDDPTALIDPPQLPRSLPKALTESQIEALLAAPEVDTPAGLRDRAM 157 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-ITVELPDGFMKLLAMTPIGKET 254 E + +GLR S+ + ++ G+ V L + L G Sbjct: 158 LELMYAAGLRVSELVNLPAVGVNLRQGVLRVTGKGSKDRLVPLGEESQHWLERYLRGARP 217 Query: 255 F----------------FINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSAT 295 FI+ +Q ++ QF K A AG++ S HG+R AT Sbjct: 218 LLAANKPVAAVDGQVPLFIDAARQPLSRQQFWALVKRYAAVAGIDPATVSPHGLRHSFAT 277 Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADR 328 + GA L G ++ + YT A + Sbjct: 278 HLLNHGADLRALQMLLGHSSLSTTQIYTLVARQ 310 >gi|312795648|ref|YP_004028570.1| hypothetical protein RBRH_01051 [Burkholderia rhizoxinica HKI 454] gi|312167423|emb|CBW74426.1| unnamed protein product [Burkholderia rhizoxinica HKI 454] Length = 396 Score = 132 bits (331), Expect = 1e-28, Method: Composition-based stats. Identities = 51/377 (13%), Positives = 107/377 (28%), Gaps = 54/377 (14%) Query: 5 LRLPPFVTKERTRHGKIIYYF--RKGHGRRIRLPYPHES--TFIPAYMSALTGSTPKREY 60 ++P + ++ ++ + R + Y A Sbjct: 33 RKIPSHLPARVYEKHGTWWFVDIKRKWHKLCRTTEGIACLYEKLAKYTRA---------- 82 Query: 61 INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF-DYRKITTKHI 119 +S R T+ LI ++ + A +R ++ I ++ G + + Sbjct: 83 SDSSRSAANTMPALIDDWVQ-KKLPDYAPKTRSNYAKMLSLIRQEFGPQWLIEDVRPADV 141 Query: 120 RSGVES-RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 ++ P+S+ ++ + ++F A+R+ NP + K K R T + Sbjct: 142 ARFLDKHFHDKPNSSNKYKALLSLIFMHAIRKGLRDRNPAREIGAAKEKKR-DRYITDAE 200 Query: 179 MQQFKS--------FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT- 229 ++ ++ S + + R D Q + + KT Sbjct: 201 LEAIRAAIVESGKNLHSSSRSILCLIDLAYQTAQRIGDLLALNWQDVTDEGIYFHPSKTV 260 Query: 230 ---GTIITVELPDGFMKLLAMTPIGKET----FFINNDKQKMNATQFSIWFKAKATKA-- 280 G + +E+ L + GK T + + +K +A Sbjct: 261 NSSGVRLLIEMTPELKDTLDLARGGKVTAIGPVICTHKGSRFTYIGAYSGWKRGCQRARK 320 Query: 281 -----------------GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 + H +R + T A A G T YT Sbjct: 321 AYEDGCNEKGIAPDPKYLIGLHFHDLRAKALTDL-KRLKGAATAQALAGHTTEGMTAHYT 379 Query: 324 KGADRIRLGIKNSRRIS 340 K + R+ +R S Sbjct: 380 KAREVERVSPVPIKRAS 396 >gi|218289606|ref|ZP_03493826.1| tyrosine recombinase XerD [Alicyclobacillus acidocaldarius LAA1] gi|218240256|gb|EED07439.1| tyrosine recombinase XerD [Alicyclobacillus acidocaldarius LAA1] Length = 294 Score = 132 bits (331), Expect = 1e-28, Method: Composition-based stats. Identities = 46/262 (17%), Positives = 97/262 (37%), Gaps = 22/262 (8%) Query: 85 GSLAVNSRISFESYFDQI-----IRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139 L+ N+ S+ + D + S ++ R ++ + +++ Sbjct: 16 RGLSENTATSYARDLADFSQYLACEQRTMRDADRTVVLRYLSDLKRRGMKSTTIARRMSA 75 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF----KSFWSEGSQPRLA 195 +R F++ +R+ + +P ++E R ++ED+++ + + G + R Sbjct: 76 LRSFFRYLLREGILQADPTANIEVAAPDEHLPRVVSEEDVERLIGAVRRPDAMGLRDRAM 135 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLL--------- 245 E L +G+R S+ ++ ++ I+ K V L + L Sbjct: 136 LETLYATGVRVSELLALSLEDVELAAGFIRVFGKGKKERVVPLGEIAQDALGLYLRYGRP 195 Query: 246 -AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302 + G+ F+N ++M F K A +AGV+ + H +R AT + GA Sbjct: 196 LLVRDRGESAVFLNRLGRRMTRQGFWNILKGYARQAGVSAEVTPHTLRHSFATHLLEGGA 255 Query: 303 TAHELMATYGWKTVDQAETYTK 324 + G + E YT Sbjct: 256 DLRVVQELLGHADISTTERYTH 277 >gi|311030138|ref|ZP_07708228.1| site-specific tyrosine recombinase XerC [Bacillus sp. m3-13] Length = 302 Score = 132 bits (331), Expect = 1e-28, Method: Composition-based stats. Identities = 48/257 (18%), Positives = 96/257 (37%), Gaps = 23/257 (8%) Query: 91 SRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAV 148 + E +FD + ++ + + + + +K+ S + +S+R +K+ + Sbjct: 29 YQKDIEDFFDFMKEEAISSINEVTHTEARMYLTRLHQKKYARKSVARKTSSLRSFYKFLL 88 Query: 149 RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAFEFLLYSGL 204 R+E V NP SV PK++ + E++ + + G + + E L +G+ Sbjct: 89 REEKVEQNPFTSVSLPKQEKRLPQFLYSEELDKLFAVSDLETPLGQRNQAILELLYATGI 148 Query: 205 RCSDSCRAGVQHLQNNIFSIKTQKTGTI-------------ITVELPDGFMKLL--AMTP 249 R S+ C + + + +I G I + L DG LL TP Sbjct: 149 RISECCHIQIHDIDFQVGTILVTGKGNKQRYIPFGSFAQDAIKIYLEDGRKSLLEKQKTP 208 Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKA--GVNKSAHGVRKFSATISADAGATAHEL 307 + F+N + + +A ++ S H +R AT + GA + Sbjct: 209 NSTKHLFLNFRGGALTPRGVRLILNDMVQQACSTLHISPHMLRHTFATHMLNEGADLRVV 268 Query: 308 MATYGWKTVDQAETYTK 324 G ++ + YT Sbjct: 269 QELLGHASLSSTQIYTH 285 >gi|238028460|ref|YP_002912691.1| site-specific tyrosine recombinase XerD [Burkholderia glumae BGR1] gi|237877654|gb|ACR29987.1| Tyrosine recombinase XerD [Burkholderia glumae BGR1] Length = 341 Score = 132 bits (331), Expect = 1e-28, Method: Composition-based stats. Identities = 49/316 (15%), Positives = 104/316 (32%), Gaps = 26/316 (8%) Query: 38 PHESTFIPAYMSALTGSTPKREYINSPRKKPTT-LKWLISEYRKSAHWGSLAVNSRISFE 96 P + +A + + + + R+ T ++ L+ N+ ++ Sbjct: 19 PRGAAGRKPRTAAGSANGAEPLGASPEREASRTSIELFCDALWLE---HGLSQNTLDAYR 75 Query: 97 SYFDQIIRKSGDFDYRKITTKH---IRSGVESRKH-TPSSAIQFLTSMRVLFKWAVRQEY 152 + I + + +R +S+ + L+ R + WA+R+ Sbjct: 76 RDLTLFAQWLATVHGASIDAVDEAMLTGYIAARSDGKATSSNRRLSVFRRYYGWALREHR 135 Query: 153 VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSD 208 A++P L + K+ ++ ++ + G+ + R E + SGLR S+ Sbjct: 136 AALDPTLRLLSAKQPARFPATLSEAQVEALLAAPEVGTALGLRDRTMLELMYASGLRVSE 195 Query: 209 SCRAGVQHLQNNIFSIKTQKTGTIITV---------ELPDGFMKLLAMT--PIGKETFFI 257 + N ++ G+ + + + + F+ Sbjct: 196 LVMLKTVEVGLNDGVVRVMGKGSKERLVPFGEVAHGWIERYLREARPALLGARTSDALFV 255 Query: 258 NNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKT 315 + M QF K A +A + + S H +R AT + GA + G Sbjct: 256 TARGEGMTRQQFWNIIKRHAMRAEIRAHLSPHTLRHAFATHLLNHGADLRVVQMLLGHSD 315 Query: 316 VDQAETYTKGADRIRL 331 + + YT A R RL Sbjct: 316 ISTTQIYTHVA-RERL 330 >gi|328952112|ref|YP_004369446.1| Tyrosine recombinase xerC [Desulfobacca acetoxidans DSM 11109] gi|328452436|gb|AEB08265.1| Tyrosine recombinase xerC [Desulfobacca acetoxidans DSM 11109] Length = 295 Score = 132 bits (331), Expect = 1e-28, Method: Composition-based stats. Identities = 45/277 (16%), Positives = 93/277 (33%), Gaps = 24/277 (8%) Query: 72 KWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIR---SGVE 124 + ++ + LA + ++ + G + + T + ++ + +E Sbjct: 2 DAAVEQFFQHLIVERGLAPLTVEAYAHDLAGLRSFLTGLGRSRWDETTLEDLQFFLNHLE 61 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 + P S + L+++R L+++ +RQ + NP ++ PK E++ + + Sbjct: 62 EQGVGPRSRARKLSAVRQLYRFLLRQGTTSHNPLEWLDSPKLPKGLPTVLGLEEVDRLLA 121 Query: 185 F----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPD 239 G + E L +G+R S+ L + K G + + Sbjct: 122 APDPTTPLGQRDDAMLELLYATGMRVSELVGLTASQLDLRRGVVLVRGKGGKERLIPMVM 181 Query: 240 GFMKLLAM----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAH 287 ++ L + F+N + F K A + G+ K S H Sbjct: 182 RAVEKLQLYLQYVRPVLLKRQKTPELFLNRSGTGLTRQGFWKILKGYARQTGLPKDLSPH 241 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 +R AT GA L G + + YT Sbjct: 242 TLRHSFATHLLWQGADLRALQLLLGHADISTTQIYTH 278 >gi|281357729|ref|ZP_06244215.1| tyrosine recombinase XerD [Victivallis vadensis ATCC BAA-548] gi|281315676|gb|EFA99703.1| tyrosine recombinase XerD [Victivallis vadensis ATCC BAA-548] Length = 299 Score = 132 bits (331), Expect = 1e-28, Method: Composition-based stats. Identities = 46/291 (15%), Positives = 100/291 (34%), Gaps = 29/291 (9%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIR---KSGDFDYRKITTKHIRSGVESRKHT 129 L +Y + L+ N+ ++ S ++ + G ++ ++ + I +++ + Sbjct: 7 NLFIDYLVTER--GLSSNTTAAYRSDLEEFRDWLTERGFKEWSQVDREAILDYLDAERDL 64 Query: 130 PSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + L ++++L ++ + + + ++ PK ++ ++ F + Sbjct: 65 GRETATLARRLVAVKMLSRFLTEEGILKKDVTAVMDSPKLWRILPDFLSEAEVDAFLKAF 124 Query: 187 SE------GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVEL-- 237 + R E L SGLR S+ R + + +N K V + Sbjct: 125 PASVKEPFEMRNRAILEVLYSSGLRVSELARLPLTAVDFDNELLRVVGKGSKTRIVPIGK 184 Query: 238 ---------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SA 286 LLA F++ + +N K A +AG++K Sbjct: 185 VALRTLRRYLADVRPLLAEKNPRSPYVFLSKSGRPLNREWIWNVVKVAAARAGIHKNIHP 244 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 H +R A+ GA + G + E YT D RL + + Sbjct: 245 HTLRHSFASHLLAHGADLRVIQEMLGHADISTTEIYTH-IDSNRLAAIHHK 294 >gi|229496921|ref|ZP_04390628.1| tyrosine recombinase XerD [Porphyromonas endodontalis ATCC 35406] gi|229316168|gb|EEN82094.1| tyrosine recombinase XerD [Porphyromonas endodontalis ATCC 35406] Length = 313 Score = 132 bits (331), Expect = 1e-28, Method: Composition-based stats. Identities = 45/274 (16%), Positives = 96/274 (35%), Gaps = 23/274 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESR---K 127 L +++ +L+ NS ++ ++I + D ++ +H+ + V S Sbjct: 20 LAEAFKRHLQLEQALSPNSISAYLMDLGKLIAYAEDCALPLDQVEYEHLETFVASLYDCG 79 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 S + + ++ +++ +Y+ +P +E PK + ++ E++ Sbjct: 80 IAARSIARIIAGVKSFYRFLYVDQYIQKDPTELLESPKLELHLPTVFSVEEIDHILEAID 139 Query: 188 ----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFM 242 + + R E L GLR S+ C + + + G V + + Sbjct: 140 YSKNDALRNRAIIEVLYSCGLRVSELCHLKLGDVHPEEAFVHVYGKGCKERLVPISPVAL 199 Query: 243 KLLA----------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290 LA ++ F++ + + +A + AG+ K S H R Sbjct: 200 DALAQYLASPHRPVPKAGQEDYIFLSRLGKAIARNSVFDLIRALSEAAGITKTVSPHTFR 259 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK 324 AT D GA + G + + E YT Sbjct: 260 HSFATHLLDGGANLQAIRLMLGHEDISTTEIYTH 293 >gi|163738156|ref|ZP_02145572.1| phage integrase [Phaeobacter gallaeciensis BS107] gi|161388772|gb|EDQ13125.1| phage integrase [Phaeobacter gallaeciensis BS107] Length = 392 Score = 132 bits (331), Expect = 1e-28, Method: Composition-based stats. Identities = 59/345 (17%), Positives = 109/345 (31%), Gaps = 23/345 (6%) Query: 25 FRKGHGRR---IRLPYPHESTFIPAYMSALTGSTPKREYIN---SPRKKPTTLKWLISEY 78 +RKG R + + G K E S +K T+ L + Sbjct: 45 YRKGGRTRRVSVGRHGKITVEEARKLAKEIMGQVAKGENPAEELSQHRKTPTVAALCERF 104 Query: 79 RKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFL 137 ++ +++ + D I+ G F + + I + P A + L Sbjct: 105 FEAHAKERCKPSTQKEYRRAIDLFIVPAIGSFKVVDVERRDIAELHHRFRDKPYQANRTL 164 Query: 138 TSMRVLFKWAVRQEYVAI--NPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR-- 193 + +F A NPC V + R+ + R + ++Q+ SE + Sbjct: 165 GVLSKMFNLAEIWGLRPDGSNPCRHVPK-YREIKRERYLNQNELQRLGHVLSEVEREGTE 223 Query: 194 -----LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT 248 AF L+ +G R + ++ + + KTG + LP +L Sbjct: 224 TPFVVAAFRLLILTGCRLGEIQTLKWDYITDTGMELPDTKTGAR-RIPLPQPARDVLTHL 282 Query: 249 PI--GKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHE 306 P G + W + +A H +R A+ + +G Sbjct: 283 PRTPGNPYVIEGKLAGQYATDLQHPWRRIRARAGLAGVRIHDLRHTYASNAVSSGMPIQM 342 Query: 307 LMATYGWKTVDQAETYTKGAD--RIRLGIKNSRRISSVV-DSDDP 348 + G + Y AD + +N+ R+ S+V D P Sbjct: 343 VGRLLGHSQIQTTMRYAHLADDPVRQAAEENAARLGSIVGDLRRP 387 >gi|326316149|ref|YP_004233821.1| tyrosine recombinase XerD [Acidovorax avenae subsp. avenae ATCC 19860] gi|323372985|gb|ADX45254.1| tyrosine recombinase XerD [Acidovorax avenae subsp. avenae ATCC 19860] Length = 303 Score = 131 bits (330), Expect = 1e-28, Method: Composition-based stats. Identities = 45/278 (16%), Positives = 91/278 (32%), Gaps = 29/278 (10%) Query: 86 SLAVNSRISFESYFDQIIRKSGDFD------YRKITTKHIRSGVESRKH--TPSSAIQFL 137 L+ N+ ++ + G H+++ +R +SA + L Sbjct: 23 GLSRNTLAAYRRDLALYAQWLGQHAPDTAGALDATAEHHLKAYFSARHAETRATSANRRL 82 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK----SFWSEGSQPR 193 T +R F+WA+R+ + +P + ++ ++ + + ++ + G + R Sbjct: 83 TVLRRYFQWALRERRIGADPTVRLQAARQPLRVPKTLSAAQVEALLQAPDTSTPLGLRDR 142 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-------------ELPDG 240 E + SGLR ++ H + ++ G+ + L + Sbjct: 143 AMLELMYASGLRVTELVTLKTYHASLSEGVLRVMGKGSKERLVPFGEVAAQWMQRYLNEA 202 Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISA 298 +LA F+ M F + K A AG+ S H +R AT Sbjct: 203 RADILAGQQTDD--LFVTRRGAGMTRAMFWVVVKKHAQAAGITVPLSPHTLRHAFATHLL 260 Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336 + GA + G + YT A + Sbjct: 261 NHGADLRVVQLLLGHADISTTTIYTHVARERLKALHAQ 298 >gi|160938560|ref|ZP_02085913.1| hypothetical protein CLOBOL_03456 [Clostridium bolteae ATCC BAA-613] gi|158438489|gb|EDP16247.1| hypothetical protein CLOBOL_03456 [Clostridium bolteae ATCC BAA-613] Length = 331 Score = 131 bits (330), Expect = 1e-28, Method: Composition-based stats. Identities = 41/254 (16%), Positives = 90/254 (35%), Gaps = 12/254 (4%) Query: 82 AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE----SRKHTPSSAIQFL 137 + + + ++ ++ + ++ G ++IT + + + R+ + S+ Sbjct: 63 MRFENYSASTVNQYQRFLTDLLVYVG-KPVQEITGEDVVECLNYYEQVRQISTSTKDHKR 121 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFE 197 F + + Y+ NP +V+ K E T ++++ + + E Sbjct: 122 RIASSFFAFLHDRGYIRKNPMATVDPIKYVAEIREALTSREVEKLRIACGGNVRDNAVLE 181 Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGKE--T 254 L +G R S+ V+ + + +K K V D M+ L G+ Sbjct: 182 LFLATGCRVSEVVGMHVEDIDMQVGCVKVLGKGQKERIVFFGDRAMEYLERYLDGRRAGA 241 Query: 255 FFINND--KQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMAT 310 +++ Q + + A +AG+ K H +R AT + + G L Sbjct: 242 VILSSRAPHQGLKKNALENIIRRIANQAGLGKRVFPHLLRHTFATRALNKGMPLPTLCDL 301 Query: 311 YGWKTVDQAETYTK 324 G +V+ Y K Sbjct: 302 MGHASVETTRIYAK 315 >gi|13488397|ref|NP_109404.1| hypothetical protein mlr9537 [Mesorhizobium loti MAFF303099] gi|14028151|dbj|BAB54743.1| mlr9537 [Mesorhizobium loti MAFF303099] Length = 183 Score = 131 bits (330), Expect = 1e-28, Method: Composition-based stats. Identities = 41/137 (29%), Positives = 65/137 (47%), Gaps = 1/137 (0%) Query: 212 AGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI 271 G Q+ + S + +KTG + + + D +L + P + F + + T F Sbjct: 4 LGRQNFREGRISYRRRKTGGEVDLPILDELFDVLRLLPADRMLFLTHTGDRPYKPTTFGN 63 Query: 272 WFKAKATKAGVNKSA-HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 WF + AG+ A HG+RK AT A+AGAT E+MA G +T D+A T K +R Sbjct: 64 WFHDQCIAAGLPHCASHGLRKAGATRLANAGATELEIMAYLGHRTPDEARTDVKKLNRKL 123 Query: 331 LGIKNSRRISSVVDSDD 347 LG +++S + Sbjct: 124 LGDTGMEKVASKKRTRF 140 >gi|147918869|ref|YP_687405.1| integrase [uncultured methanogenic archaeon RC-I] gi|110622801|emb|CAJ38079.1| integrase [uncultured methanogenic archaeon RC-I] Length = 278 Score = 131 bits (330), Expect = 1e-28, Method: Composition-based stats. Identities = 41/260 (15%), Positives = 92/260 (35%), Gaps = 21/260 (8%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD--YRKITTKHIRSGVESRKH-TPS 131 I E R S+ + + + ++ + +G + + + KH + + Sbjct: 14 IDEKRLSS-----SPGTIRQYGMILNRFYKYTGKQPEMVVRPEIVRYLNYLMFEKHLSKT 68 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191 + L+ ++ + + + YV+ NP + K + T +M + ++ Sbjct: 69 TVANVLSVLKSFYSFMLDNGYVSSNPTRGINNIKLDKKAPVYLTVSEMNDLLDT-AIDTR 127 Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLL---AM 247 R+ L +G+R S+ + + + +IK K V +P+ +K + A Sbjct: 128 DRIIVRLLYATGVRVSELVNIRKKDIDFDRCTIKVFGKGAKERIVLVPETVVKEMYDYAA 187 Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAH 305 + + F + K A +A +NK + H +R AT G Sbjct: 188 SLSNDDRLF------NLTPRTVQRDIKQLARRAKINKNVTPHKLRHSFATHMLQNGGNVV 241 Query: 306 ELMATYGWKTVDQAETYTKG 325 + G +++ + YT Sbjct: 242 AIQKLLGHSSLNTTQIYTHY 261 >gi|323483868|ref|ZP_08089245.1| integrase/recombinase XerD [Clostridium symbiosum WAL-14163] gi|323692871|ref|ZP_08107096.1| integrase/recombinase XerD [Clostridium symbiosum WAL-14673] gi|323402822|gb|EGA95143.1| integrase/recombinase XerD [Clostridium symbiosum WAL-14163] gi|323503046|gb|EGB18883.1| integrase/recombinase XerD [Clostridium symbiosum WAL-14673] Length = 282 Score = 131 bits (330), Expect = 1e-28, Method: Composition-based stats. Identities = 47/267 (17%), Positives = 91/267 (34%), Gaps = 22/267 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDF------DYRKITTKHIRSGVESRKHTPSSAIQFLT 138 ++ N+ +S+ Q+ G+ K + +E ++ + L Sbjct: 16 KKMSRNTVLSYHRDLLQMASYMGERGITEAGKVTKTSLTSYILFMEKEGKATTTISRMLA 75 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRL 194 SM+ F + + + NP V PK + + + E++ S S + + Sbjct: 76 SMKAFFHYEFSEGKIRRNPAELVHAPKIEKKAPVILSVEEVTSLLKQPSGRSSKEIRDKA 135 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE--------LPDGFMKLLA 246 E L +G+R S+ + + NI I + G T+ + D + Sbjct: 136 MLELLYATGIRVSELTSLKLTDINMNIGFITCRDGGKDRTIPFSRVAKGAMEDYIENARS 195 Query: 247 MTPIGKET--FFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGA 302 KE+ F+N + +M+ F K KAG+ + + H +R A GA Sbjct: 196 ELTRKKESDWLFVNCNGGQMSRQGFWKIIKFYGDKAGIESDITPHTLRHSFAAHLIGGGA 255 Query: 303 TAHELMATYGWKTVDQAETYTKGADRI 329 + G V + Y + Sbjct: 256 DMKAVQVILGHSDVATTQMYAAYVGKR 282 >gi|222032710|emb|CAP75449.1| integrase [Escherichia coli LF82] gi|312945501|gb|ADR26328.1| putative integrase [Escherichia coli O83:H1 str. NRG 857C] Length = 357 Score = 131 bits (330), Expect = 1e-28, Method: Composition-based stats. Identities = 61/341 (17%), Positives = 112/341 (32%), Gaps = 23/341 (6%) Query: 7 LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHE---STFIPAYMSALTGSTPKREYINS 63 LPP + R+ Y G+ L S I A + L+ + + Sbjct: 12 LPPNLY---IRNNGYYCYRDPRTGKEFGLGRDRRIAVSEAIQANIELLSENRRESLIDRI 68 Query: 64 PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123 TL + Y + + + + S I RK D I+TK + + + Sbjct: 69 KGADAITLHAWLDRYETILSERGIRPKTLLDYASKIRVIRRKLPDKPLTDISTKEVAAML 128 Query: 124 ESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 + + +SA +++ +F+ A+ + +V NP + K + R E + Sbjct: 129 NTYVAEGKAASAKLIRSTLVDVFREAIAEGHVETNPVTATRTAKSEVRRSRLTANEYVAI 188 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE----- 236 + + RLA + + +G R D CR + +N I+ KTGT + + Sbjct: 189 YHAAEPLPIWLRLAMDLAVVTGQRVGDLCRMKWSDINDNHLHIEQGKTGTKLAIPLMLTI 248 Query: 237 --LPDGFMKLL--AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-----NKSAH 287 L L G ET + + ++ S +F +G+ + H Sbjct: 249 DALNISLADTLQKCREASGSETIIASTHHEPLSPKTVSKYFTKARNVSGLSFDGDPPTFH 308 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 +R + G K+ A Y R Sbjct: 309 ELR-SLSARLYRNQIGDKFAQRLLGHKSDSMAARYRDSRGR 348 >gi|332111079|gb|EGJ11111.1| tyrosine recombinase XerD subunit [Rubrivivax benzoatilyticus JA2] Length = 310 Score = 131 bits (330), Expect = 1e-28, Method: Composition-based stats. Identities = 48/274 (17%), Positives = 92/274 (33%), Gaps = 23/274 (8%) Query: 86 SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE-----SRKHTPSSAIQFLTSM 140 LA + ++ +++ + ++A + LT Sbjct: 33 GLAPLTLAAYRRDLTLYAGWLARRHAKRLDDSREADLLAYIAERHTATRATTANRRLTVF 92 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAF 196 + F+WA+R+ VA +P L ++ ++ + ++ ++ + + G + R Sbjct: 93 KRYFRWALREHLVAADPTLRLQSARQPLRVPKSLSERQVEALLAAPETDTALGLRDRAML 152 Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-----ELPDGFMKLLAMTPIG 251 E + SGLR S+ HL ++ G+ + E + L Sbjct: 153 ELMYGSGLRVSELVGLKSVHLGLAEGVLRVVGKGSKERIVPFGEEAHGWLQRYLGEARAA 212 Query: 252 ------KETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGAT 303 + F+ M F + K A AG+ S H +R AT + GA Sbjct: 213 ILGGQASDALFVTARGGAMTRQAFWLLVKKYARAAGILVPLSPHTLRHAFATHLLNHGAD 272 Query: 304 AHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 + G + YT A R RL ++R Sbjct: 273 LRAVQMLLGHADIGTTTIYTHVA-RERLRQLHAR 305 >gi|9634144|ref|NP_037686.1| integrase [Enterobacteria phage HK022] gi|138560|sp|P16407|VINT_BPHK0 RecName: Full=Integrase gi|6863136|gb|AAF30377.1|AF069308_25 integrase [Enterobacteria phage HK022] gi|15760|emb|CAA36221.1| unnamed protein product [Enterobacteria phage HK022] gi|16209083|gb|AAL09856.1| integrase [CRIM helper plasmid pAH69] gi|16209095|gb|AAL09864.1| integrase [CRIM helper plasmid pAH83] Length = 357 Score = 131 bits (330), Expect = 1e-28, Method: Composition-based stats. Identities = 59/341 (17%), Positives = 109/341 (31%), Gaps = 23/341 (6%) Query: 7 LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMS---ALTGSTPKREYINS 63 LPP + R+ Y G+ L A + L+G+ + Sbjct: 12 LPPNLY---IRNNGYYCYRDPRTGKEFGLGRDRRIAITEAIQANIELLSGNRRESLIDRI 68 Query: 64 PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123 TL + Y + + + + S I RK D I+TK + + + Sbjct: 69 KGADAITLHAWLDRYETILSERGIRPKTLLDYASKIRAIRRKLPDKPLADISTKEVAAML 128 Query: 124 ESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 + + +SA +++ +F+ A+ + +VA NP + K + R E + Sbjct: 129 NTYVAEGKSASAKLIRSTLVDVFREAIAEGHVATNPVTATRTAKSEVRRSRLTANEYVAI 188 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP--- 238 + + RLA + + +G R D CR + +N I+ KTG + + L Sbjct: 189 YHAAEPLPIWLRLAMDLAVVTGQRVGDLCRMKWSDINDNHLHIEQSKTGAKLAIPLTLTI 248 Query: 239 ----DGFMKLL--AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-----NKSAH 287 L ET + ++ S +F +G+ + H Sbjct: 249 DALNISLADTLQQCREASSSETIIASKHHDPLSPKTVSKYFTKARNASGLSFDGNPPTFH 308 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 +R + G K+ A Y R Sbjct: 309 ELR-SLSARLYRNQIGDKFAQRLLGHKSDSMAARYRDSRGR 348 >gi|294054307|ref|YP_003547965.1| tyrosine recombinase XerD [Coraliomargarita akajimensis DSM 45221] gi|293613640|gb|ADE53795.1| tyrosine recombinase XerD [Coraliomargarita akajimensis DSM 45221] Length = 312 Score = 131 bits (330), Expect = 1e-28, Method: Composition-based stats. Identities = 51/274 (18%), Positives = 104/274 (37%), Gaps = 23/274 (8%) Query: 85 GSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSGVESRK--HTPSSAIQFLTS 139 LA N+ S+ Q + ++G ++ + + + + + SS + L++ Sbjct: 28 RGLATNTVQSYAQDLCQFASFLHRAGIGSWQAVEAEQVSAWTAELAVGYARSSQARKLSA 87 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195 +R+ + VR++ A + V PK++ ++E++ + G + R Sbjct: 88 VRMFARHLVREQIRADDFTELVSAPKQRRSLPEVLSREEVDLLLNAPSMSTPHGLRDRAI 147 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAM-TPIGKE 253 E SGLR S+ C +Q + + ++ K V + + L +G+ Sbjct: 148 LELFYSSGLRVSELCGLPLQSVNLDEGFLRVYGKGSKERVVPIGAAAVAALKDYLAVGRS 207 Query: 254 TF---------FINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302 F F++ Q ++ + K ATK G+ K H +R AT + GA Sbjct: 208 QFVQAKTGSEVFLSQRGQAISRKMVWVMIKQHATKVGIKKPIKPHLLRHSFATHLLEGGA 267 Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336 + G + + YT RL +++ Sbjct: 268 DLRAIQEMLGHADISTTQIYT-AVQANRLADEHA 300 >gi|325860247|ref|ZP_08173372.1| site-specific recombinase, phage integrase family [Prevotella denticola CRIS 18C-A] gi|325482334|gb|EGC85342.1| site-specific recombinase, phage integrase family [Prevotella denticola CRIS 18C-A] Length = 407 Score = 131 bits (330), Expect = 1e-28, Method: Composition-based stats. Identities = 59/360 (16%), Positives = 123/360 (34%), Gaps = 50/360 (13%) Query: 16 TRHGKIIYYFRKG--HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73 +GK + Y ++ + + + Y+ A + +R+ K ++ Sbjct: 41 DENGKPVLYETGKMMGKPKVHIKHNRRKENLQLYLIAKPRTPAERQQNKETLKLAAKIRA 100 Query: 74 LISE--------YR----KSAHWGSLAVN-----SRISFE-------SYFDQIIRKSGDF 109 + YR ++ ++ ++ + D + + + Sbjct: 101 EREQQFKESMLGYRLKKDRNVNFLDYYQAYIDSYTKKDLRMIKIALNRFKDFLKEQYPVY 160 Query: 110 DY----RKITTKHIRSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER 163 ++ IT + VE + A + + ++A+ E + +PC V Sbjct: 161 EFGIKPDLITKDMMEQFVEYLQSRSVGEGAKSIYQRFKKVVRYAIDHEVMLKDPCKGV-V 219 Query: 164 PKRKTEGIR--PWTKEDMQQFKSFWSEGSQP--RLAFEFLLYSGLRCSDSCRAGVQHLQ- 218 K + +R + +++Q + P R AF LY GLR D +++ Sbjct: 220 CKVDEQILRKDVLSMDEIQSLIQCHYDNENPNVRRAFILCLYCGLRFCDVKDLTYKNVDY 279 Query: 219 -NNIFSIKTQKTG-----TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIW 272 N + + KT + + + L DG + L+ P + N + S Sbjct: 280 TNRLLKFEQNKTKGHSAHSGVIIPLNDGLLSLIGEAPEDLNSSIFNLP----SYESCSKS 335 Query: 273 FKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 K +AG+NK S H R A + GA + + G + E YT+ D+++ Sbjct: 336 VKRWIKRAGINKHISWHCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYTRAVDKLK 395 >gi|89901430|ref|YP_523901.1| tyrosine recombinase XerD [Rhodoferax ferrireducens T118] gi|89346167|gb|ABD70370.1| tyrosine recombinase XerD subunit [Rhodoferax ferrireducens T118] Length = 306 Score = 131 bits (330), Expect = 1e-28, Method: Composition-based stats. Identities = 47/294 (15%), Positives = 103/294 (35%), Gaps = 29/294 (9%) Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFD----QIIRKSGDFDYRKITTKHIRSGVE 124 ++ I L+ N+ ++ + + + + Sbjct: 12 ASIDAFIDALWLE---EGLSKNTLAAYRRDLTLYGAWLQPQHKALPATLEHDLNGYFAAQ 68 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 S+A + LT + F+WA+R+ ++ +P L ++ K+ + ++ ++ + Sbjct: 69 HSATKASTANRRLTVFKRYFRWALREHLISADPTLKLQAAKQALRVPKTLSEFQVEALLA 128 Query: 185 F----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTII----- 233 G + R E + SGLR S+ V ++ +N+ + + + Sbjct: 129 APDEQTPLGVRDRTMLELMYASGLRVSELVTLKVFNVSLSDNVLRVFGKGNKERLVPFGE 188 Query: 234 --TVELPDGFMKLLAMTPIGKET--FFINNDK----QKMNATQFSIWFKAKATKAGV--N 283 ++ + + GK+T F+ + M+ F + K A AG+ Sbjct: 189 VASLWIKRYLAQARPELLAGKQTEDLFVTHRGATPGTAMSRVMFWMIVKKYALSAGITAP 248 Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 S H +R AT + G + G + YT A R RL + +++ Sbjct: 249 LSPHTLRHAFATHLLNHGVDLRAVQMLLGHVDISTTTIYTHVA-RERLKVLHAQ 301 >gi|161485706|ref|NP_643858.2| site-specific tyrosine recombinase XerD [Xanthomonas axonopodis pv. citri str. 306] Length = 323 Score = 131 bits (330), Expect = 1e-28, Method: Composition-based stats. Identities = 46/273 (16%), Positives = 91/273 (33%), Gaps = 29/273 (10%) Query: 85 GSLAVNSRISFESYFDQIIR-----KSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139 +A + S+ + + R G + ++P S + L++ Sbjct: 38 QGVARQTLESYRRDLEGLARWRDGAGGGLLGIDRAALFDYLRWRTRANYSPRSTARLLST 97 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195 +R + +R + +P ++ P + T+ ++ + G + R Sbjct: 98 LRAFYGLCLRDGARSDDPTALIDPPHLPRSLPKALTESQIEALLAAPDLDTPAGLRDRAM 157 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-ITVELPDGFMKLLA-------- 246 E + +GLR S+ + ++ G+ V L + L Sbjct: 158 LELMYAAGLRVSELVNLPAVGVNLRQGVLRVTGKGSKDRLVPLGEESQHWLERYLREARP 217 Query: 247 --------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSAT 295 G+ FI+ +Q ++ QF K A AG++ S HG+R AT Sbjct: 218 LLAANKPVAAVDGQVPLFIDVSRQPLSRQQFWALVKRYAAVAGIDPATVSPHGLRHSFAT 277 Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADR 328 + GA L G ++ + YT A + Sbjct: 278 HLLNHGADLRALQMLLGHSSLSTTQIYTLVARQ 310 >gi|302872232|ref|YP_003840868.1| tyrosine recombinase XerD [Caldicellulosiruptor obsidiansis OB47] gi|302575091|gb|ADL42882.1| tyrosine recombinase XerD [Caldicellulosiruptor obsidiansis OB47] Length = 291 Score = 131 bits (330), Expect = 1e-28, Method: Composition-based stats. Identities = 41/280 (14%), Positives = 100/280 (35%), Gaps = 25/280 (8%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK-----HIRSGVES 125 ++ +K + + N+ S+ + I + + T ++ Sbjct: 4 IEAFCDHLQKQNRF---SQNTISSYLRDAKKYIEFLDNMKIKLENTSQATLIAYIISMQK 60 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + S+ + + S++V + + Q+ + I + +E PK + + T++++++ S Sbjct: 61 SGKSNSTIARAIVSLKVFYDFLKTQKIIDIG-KIEIEPPKLEKNPPQILTRDEVEKLLSC 119 Query: 186 WSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241 E G + + E L +G+R S+ + + I + + + Sbjct: 120 PKEEDIKGIRDKAMLEVLYATGIRVSELINLNLDDINLEHGYIICKNKKRDRVIPIGSYA 179 Query: 242 MKLLA----------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289 + + +E F+N + ++M F K A AG++K + H + Sbjct: 180 ISAVEKYLRHSRPYLAKSKNEEALFLNFNGERMTRQGFWKIVKFYAQSAGIDKEITPHVL 239 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 R A + GA + G + + Y + A+ Sbjct: 240 RHSFAIHLIENGADVRAVQQMLGHADISTTQRYLQVANVK 279 >gi|149927220|ref|ZP_01915477.1| Tyrosine recombinase XerD [Limnobacter sp. MED105] gi|149824159|gb|EDM83380.1| Tyrosine recombinase XerD [Limnobacter sp. MED105] Length = 299 Score = 131 bits (330), Expect = 1e-28, Method: Composition-based stats. Identities = 55/278 (19%), Positives = 103/278 (37%), Gaps = 24/278 (8%) Query: 72 KWLISEYRKSAHWGS--LAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRS-GVES 125 LI E+ + W LA + ++ Q+ + + + + + +HIR+ + Sbjct: 5 ADLIDEFCTTL-WLEEGLAKATLQAYRGDLQQLGNWLDEHFAENLLQASNEHIRNHVHDL 63 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + PSS + L+S + + W NPC ++ KR + +++ + S Sbjct: 64 LELKPSSLNRKLSSYKRFYLWLNTTRQREDNPCSQLQSAKRGLRIPKTLSEKQVLDLLSA 123 Query: 186 WS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG 240 G + + EF+ SGLR S+ ++ + N+ ++K K V + + Sbjct: 124 PDLSNAAGQRDKAMLEFMYASGLRVSELVNMPLRAVDLNVGAVKVLGKGKKERLVPMGEP 183 Query: 241 --------FMKLLAMTPIGKET--FFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHG 288 + GK + F+ + M F K A AG+N S H Sbjct: 184 ARLAIQLYLQQARGELLKGKTSDFLFVTHFGTPMTRQGFWKNTKRLALIAGINTTVSPHV 243 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 +R AT + GA + G + + YT A Sbjct: 244 LRHAFATHLINHGADLRVVQLLLGHADIGTTQIYTHVA 281 >gi|110598394|ref|ZP_01386667.1| Tyrosine recombinase XerD [Chlorobium ferrooxidans DSM 13031] gi|110340003|gb|EAT58505.1| Tyrosine recombinase XerD [Chlorobium ferrooxidans DSM 13031] Length = 304 Score = 131 bits (330), Expect = 1e-28, Method: Composition-based stats. Identities = 44/265 (16%), Positives = 94/265 (35%), Gaps = 25/265 (9%) Query: 85 GSLAVNSRISFESYFDQ--IIRKSGDFDYRKITTKHIRSGVESRKHT---PSSAIQFLTS 139 + + N+R+S+ + ++ + + IT IR + T SS + +++ Sbjct: 23 RNFSENTRVSYRNDLERYLLFMQQNAISLESITPNQIREFITELYLTGLEASSLARNISA 82 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-------SEGSQP 192 +R L K+ + + +INP ++ +PK+ T ++ + + Sbjct: 83 IRSLHKFLLSERTTSINPAENLHQPKQARYLPTVLTIDETLRLLEAPLLQNPQSKYFLRD 142 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPI- 250 + E L +G+R S+ Q+L ++ K V + + + Sbjct: 143 KTIVELLYATGVRVSELISIQQQNLYLEAGFVRIFGKGSKERLVPVGSAATEWITRYQRE 202 Query: 251 ---------GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299 + F+N + ++ + A AG+ K S H R AT + Sbjct: 203 LRQGLSGRNSGDYLFLNARGKPLSRMAIFSMVRQYAIIAGIEKQISPHTFRHTFATHLLE 262 Query: 300 AGATAHELMATYGWKTVDQAETYTK 324 GA + G ++ + YT Sbjct: 263 GGADLRAVQEMLGHSSISTTQIYTH 287 >gi|300773591|ref|ZP_07083460.1| tyrosine recombinase XerD [Sphingobacterium spiritivorum ATCC 33861] gi|300759762|gb|EFK56589.1| tyrosine recombinase XerD [Sphingobacterium spiritivorum ATCC 33861] Length = 297 Score = 131 bits (330), Expect = 1e-28, Method: Composition-based stats. Identities = 46/266 (17%), Positives = 97/266 (36%), Gaps = 29/266 (10%) Query: 85 GSLAVNSRISFESYFDQIIR-----KSGDFDYRKITTKHIRS---GVESRKHTPSSAIQF 136 LA S E+Y + I + + +++ H++ + + +P + + Sbjct: 18 RGLAP---HSIEAYLNDISKLEVFCTNQQLTVNQLSVDHLQEFLVWLNTFNISPYTQSRL 74 Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQP 192 ++ ++ F + + + NP ++ P+ + E++ Q G + Sbjct: 75 ISGLKAFFGYLQLEGLITKNPAELIQSPRLSRKIPVVLNIEEIDQLIGALDLSTTDGMRN 134 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFMKLLAM---- 247 + E L GLR S+ + +L +I IK + G + + +K L + Sbjct: 135 KAILEILYGCGLRVSELVNLRISNLFLHIDFIKVEGKGNKERLIPIGQHAIKYLNIYLNE 194 Query: 248 ----TPIGK---ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISA 298 P+ + F+N ++ + K A K G+ K S H R A+ Sbjct: 195 IRVQQPVKAGFEDYVFLNKRGTSLSRVMIFLIIKDLAAKTGLQKEISPHTFRHSFASHLV 254 Query: 299 DAGATAHELMATYGWKTVDQAETYTK 324 + GA + G +++ E YT Sbjct: 255 EGGADLRAVQDMLGHESITTTEIYTH 280 >gi|308271884|emb|CBX28492.1| hypothetical protein N47_G38160 [uncultured Desulfobacterium sp.] Length = 311 Score = 131 bits (330), Expect = 2e-28, Method: Composition-based stats. Identities = 46/252 (18%), Positives = 101/252 (40%), Gaps = 13/252 (5%) Query: 90 NSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVR 149 E+ +++ G + I + + + S+K +P+ A + L ++ LF+ AV Sbjct: 61 RYYKENENLIKGLVKIWGGKNV--INREDVEVYINSKK-SPTQANKELKMIKRLFQHAVE 117 Query: 150 QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDS 209 ++++ NP +++ + +ED+ +F + R F ++Y+ R + Sbjct: 118 RDWLETNPAKNIKLLPVSKKRKYIPPQEDIIKFMV---SAGKDRFYFLTIVYTLARMREI 174 Query: 210 CRAGVQHLQNNIFSIKTQKTG----TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMN 265 + + ++ +KT+K T + + + +L P E F N+ + Sbjct: 175 NYLKWEDVYSDYLILKTRKARNSDLTERRIPINEILKYILEQLPKKGEYVFCQNNGKPY- 233 Query: 266 ATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 +AG+ + S H +R + A+ A+AGA + A G +TY + Sbjct: 234 -DCRKRLMAGICKRAGIKRFSFHSLRHYGASKLAEAGAPLTAIQAILGHSRATTTDTYLQ 292 Query: 325 GADRIRLGIKNS 336 + + NS Sbjct: 293 SLGMKKTEVMNS 304 >gi|257094620|ref|YP_003168261.1| tyrosine recombinase XerD [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257047144|gb|ACV36332.1| tyrosine recombinase XerD [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 304 Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats. Identities = 52/275 (18%), Positives = 98/275 (35%), Gaps = 24/275 (8%) Query: 86 SLAVNSRISFESYFDQIIRKSGDFDYRK---ITTKHIRSGVESRKHT--PSSAIQFLTSM 140 LA S S+ S Q+ + I + V + T SS ++L+++ Sbjct: 26 GLAKASLSSYRSDLGQLAGWLAEQRLGSLCGIDEATLLRFVATLAQTLRASSQARYLSTL 85 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK----SFWSEGSQPRLAF 196 R ++ V + +P L + P + + + ++ +++ S G + R Sbjct: 86 RRFYRHQVAHGRRSSDPTLRIAMPVKPSRLPKVLSELQVERLLGAPPSETPLGQRDRAML 145 Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAM-------- 247 E L +GLR S+ + + ++ ++ K V L + L Sbjct: 146 ETLYATGLRVSELVGLKLHEVSLDMGVVRVFGKGAKERLVPLGEEARDWLRRHLADGRLA 205 Query: 248 --TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGA 302 + F+ M F K A +AG++ S H +R AT + GA Sbjct: 206 LLAGRQSDDVFVTARGAAMTRQAFWQLIKRYALQAGMDPARLSPHVLRHAFATHLLNHGA 265 Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 + G + + YT A R RL I +++ Sbjct: 266 DLRVVQLLLGHSDISTTQIYTHVA-RERLKILHAQ 299 >gi|71906177|ref|YP_283764.1| tyrosine recombinase XerD subunit [Dechloromonas aromatica RCB] gi|71845798|gb|AAZ45294.1| tyrosine recombinase XerD subunit [Dechloromonas aromatica RCB] Length = 302 Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats. Identities = 45/269 (16%), Positives = 92/269 (34%), Gaps = 24/269 (8%) Query: 86 SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS-----GVESRKHTPSSAIQFLTSM 140 LA + S+ S ++ + + H + +++ +S ++L+++ Sbjct: 24 GLAKATLDSYRSDLSRLALWLANNASEPLLDLHETTLTAFIAHLAKQTRATSQARYLSTL 83 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAF 196 R ++W + + + +P L + P R + + +++ ++ G + R Sbjct: 84 RRFYRWQLGRGRIVADPTLKLANPSRPSRLPKVMSEKQVEALLDAPDLDTPLGLRDRAML 143 Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGKET- 254 E + +GLR S+ + + ++ K V L ++ + Sbjct: 144 ETIYATGLRVSELVNLRLHEVSLADGVLRALGKGSKERLVPLGQLAIEWIKRYLNEARPD 203 Query: 255 ---------FFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSATISADAGA 302 FI M F K A AG+ S H +R AT + GA Sbjct: 204 ILNGQHSDDLFITARGGGMTRQAFWQLIKRYALIAGIAPDKLSPHVLRHAFATHLLNHGA 263 Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRL 331 + G + + YT A R RL Sbjct: 264 DLRVVQLLLGHADISTTQIYTHVA-RERL 291 >gi|213965974|ref|ZP_03394164.1| tyrosine recombinase XerD [Corynebacterium amycolatum SK46] gi|213951388|gb|EEB62780.1| tyrosine recombinase XerD [Corynebacterium amycolatum SK46] Length = 312 Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats. Identities = 45/272 (16%), Positives = 98/272 (36%), Gaps = 33/272 (12%) Query: 85 GSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIRSGVESRKHT----------PS 131 L+ N+ S++ ++ R+ G + ++T + + + P+ Sbjct: 19 KGLSANTLASYKRDLEKYRTYLREIGRTELAQVTEQDVSEFLAYLARGDKSEGRPALAPT 78 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF-KSFWSEGS 190 S + L+++R K+AV + + ++ V PK+ + + + +++ + +S +G+ Sbjct: 79 SVTRSLSAVRSFHKFAVGEGALDVDVAKRVAPPKQPSRYPKALSIDEVTRLIESIPDDGT 138 Query: 191 ------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIITVELPDGFMK 243 + R EFL +G R S+ + + + K G V + M Sbjct: 139 AVVTDLRNRALVEFLYSTGARVSEVTGLDIDDVDRETNLVLLRGKGGKERIVPVGSPAMA 198 Query: 244 LLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRK 291 L FIN+ ++++ +AG+ S H +R Sbjct: 199 ALDAWLTRGRPSWVRANSGPALFINSLGRRLSRQSAGNTLAELGERAGLKVKISPHTLRH 258 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYT 323 T + GA + G +V + YT Sbjct: 259 SFGTHLIEGGADVRVVQELLGHASVTTTQIYT 290 >gi|168467636|ref|ZP_02701473.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|195629975|gb|EDX48635.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Newport str. SL317] Length = 300 Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats. Identities = 43/259 (16%), Positives = 89/259 (34%), Gaps = 19/259 (7%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITT------KHIRSGVESRKHTPSSAIQFLT 138 L+ + +++ D II +G+ + + + P+S L+ Sbjct: 21 RQLSPITLQNYQRQLDAIIALAGETGLKSWQQCDAAIVRSFAVRSRRKGLGPASLALRLS 80 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---WSEGSQPRLA 195 ++R F W V Q + NP V PK + +D+ + + R Sbjct: 81 ALRSFFDWLVSQGELKANPAKGVSAPKAPRHLPKNIDVDDVNRLLDIDLNDPLAVRDRAM 140 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT--------VELPDGFMKLLAM 247 E + +GLR S+ ++HL + + G+ V + ++ L + Sbjct: 141 LEVMYGAGLRLSELVGLDIKHLDLDTGEVWVMGKGSKERRLPIGRNAVTWIEHWLDLRGL 200 Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAH 305 +E F++ ++++ F K G+N H +R AT ++ Sbjct: 201 FASDEEALFLSKLGKRISVRNVQKRFAEWGIKQGLNSHVHPHKLRHSFATHMLESSGDLR 260 Query: 306 ELMATYGWKTVDQAETYTK 324 + G + + YT Sbjct: 261 GVQELLGHANLSTTQIYTH 279 >gi|294787053|ref|ZP_06752307.1| tyrosine recombinase XerD [Parascardovia denticolens F0305] gi|315226701|ref|ZP_07868489.1| tyrosine recombinase XerD [Parascardovia denticolens DSM 10105] gi|294485886|gb|EFG33520.1| tyrosine recombinase XerD [Parascardovia denticolens F0305] gi|315120833|gb|EFT83965.1| tyrosine recombinase XerD [Parascardovia denticolens DSM 10105] Length = 310 Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats. Identities = 47/270 (17%), Positives = 95/270 (35%), Gaps = 30/270 (11%) Query: 85 GSLAVNSRISFESYFDQ---IIRKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFLT 138 L+ +R ++ES + + + G +I + + + V S + S + L Sbjct: 23 KGLSEATRRAYESDLKKYMAWLARHGIDRPDQIRQEDVETFVASLSQEGESSRSIARRLA 82 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF-------KSFWSEGSQ 191 S+ ++ + + V+ PK + T E++++ + + Sbjct: 83 SIHEYHRFLTSRGMAQADVSQGVKPPKAASVLPDVLTIEEVRRLLEKTSNERDTDPVVLR 142 Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVEL------------- 237 R EFL +G R S++ A + + ++ F+ T K V L Sbjct: 143 DRALLEFLYATGARVSEAVGANLTDVDLDDHFARLTGKGNKQRLVPLGSYACQAMERYLD 202 Query: 238 -PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSA 294 P ++ A F+N ++++ + A +AG+ K H +R A Sbjct: 203 GPRAQLQAKAAKGAEVNAIFLNKKGKRLSRQSVWEIVQKAADRAGITKEVHPHTLRHSCA 262 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTK 324 T GA + G +V + YT Sbjct: 263 THLIQGGADVRMVQELLGHASVTTTQIYTH 292 >gi|298373800|ref|ZP_06983789.1| tyrosine recombinase XerD [Bacteroidetes oral taxon 274 str. F0058] gi|298274852|gb|EFI16404.1| tyrosine recombinase XerD [Bacteroidetes oral taxon 274 str. F0058] Length = 307 Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats. Identities = 45/269 (16%), Positives = 97/269 (36%), Gaps = 29/269 (10%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRKH---TPSSAIQFLTS 139 S++ N+ +++ + DYR+ T ++++ + + S + ++ Sbjct: 20 KSMSENTVVAYIRDLHTLSEYLDGIGIDYRQATLTNLKNLIVELTDLGISGRSRARMISG 79 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF-----------KSFWSE 188 ++ +++ + + +P +E+P+ + E++ + + + Sbjct: 80 IKSFYRFCIIDRLLEADPTEQLEQPQLPLYLPDVLSVEEIDRIIVTIDLSEVDKYTKLNI 139 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGF------ 241 G + E L SG+R S+ A + + + F K V L D Sbjct: 140 GHRNLAIVEVLYGSGVRVSELVYAKISDINFDEKFIKILGKGNKERLVPLSDPAIRAINN 199 Query: 242 ----MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSAT 295 ++L P ++ F+N +M + K KAG+ K S H R AT Sbjct: 200 WFLARRVLTPKPKHEDYIFLNRRGARMTRQMVFLAIKNMVEKAGITKTVSPHTFRHSFAT 259 Query: 296 ISADAGATAHELMATYGWKTVDQAETYTK 324 + GA + G ++ E YT Sbjct: 260 HLLENGANLRAIQQLLGHASITTTEIYTH 288 >gi|258511717|ref|YP_003185151.1| tyrosine recombinase XerD [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257478443|gb|ACV58762.1| tyrosine recombinase XerD [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 294 Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats. Identities = 46/262 (17%), Positives = 97/262 (37%), Gaps = 22/262 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGD-----FDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139 L+ N+ S+ + D + S ++ R ++ + +++ Sbjct: 16 RGLSENTATSYARDLADFSQYLAREQRTMRDADRTAVLRYLSDLKRRGMKSTTIARRMSA 75 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF----KSFWSEGSQPRLA 195 +R F++ +R+ + +P ++E R ++ED+++ + + G + R Sbjct: 76 LRSFFRYLLREGVLQADPTANIEVAAPDEHLPRVVSEEDVERLIGAVRRPDAMGLRDRAM 135 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLL--------- 245 E L +G+R S+ ++ ++ I+ K V L + L Sbjct: 136 LETLYATGVRVSELLALSLEDVELAAGFIRVFGKGKKERVVPLGEIAQDALGLYLRYGRP 195 Query: 246 -AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302 + G+ F+N ++M F K A +AGV+ + H +R AT + GA Sbjct: 196 LLVRDRGESAVFLNRLGRRMTRQGFWNILKGYARQAGVSAEVTPHTLRHSFATHLLEGGA 255 Query: 303 TAHELMATYGWKTVDQAETYTK 324 + G + E YT Sbjct: 256 DLRVVQELLGHADISTTERYTH 277 >gi|161617068|ref|YP_001591033.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|168238402|ref|ZP_02663460.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168244638|ref|ZP_02669570.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168263161|ref|ZP_02685134.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|194447983|ref|YP_002047961.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194736121|ref|YP_002116878.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|161366432|gb|ABX70200.1| hypothetical protein SPAB_04901 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194406287|gb|ACF66506.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194711623|gb|ACF90844.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197288766|gb|EDY28141.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|205336497|gb|EDZ23261.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205348233|gb|EDZ34864.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] Length = 300 Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats. Identities = 44/259 (16%), Positives = 90/259 (34%), Gaps = 19/259 (7%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITT------KHIRSGVESRKHTPSSAIQFLT 138 L+ + +++ D II +G+ + + + P+S L+ Sbjct: 21 RQLSPITLQNYQRQLDAIIALAGETGLKSWQQCDAAIVRSFAVRSRRKGLGPASLALRLS 80 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---WSEGSQPRLA 195 ++R F W V Q + NP V PK + +D+ + + R Sbjct: 81 ALRSFFDWLVSQGELKANPAKGVSAPKAPRHLPKNIDVDDVNRLLDIDLNDPLAVRDRAM 140 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT--------VELPDGFMKLLAM 247 E + +GLR S+ ++HL + + G+ V + ++ L + Sbjct: 141 LEVMYGAGLRLSELVGLDIKHLDLDTGEVWVMGKGSKERRLPIGRNAVTWIEHWLDLRGL 200 Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAH 305 +E F++ ++++A F K G+N H +R AT ++ Sbjct: 201 FASDEEALFLSKLGKRISARNVQKRFAEWGIKQGLNSHVHPHKLRHSFATHMLESSGDLR 260 Query: 306 ELMATYGWKTVDQAETYTK 324 + G + + YT Sbjct: 261 GVQELLGHANLSTTQIYTH 279 >gi|194445824|ref|YP_002043179.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|200387005|ref|ZP_03213617.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|194404487|gb|ACF64709.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|199604103|gb|EDZ02648.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Virchow str. SL491] Length = 300 Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats. Identities = 44/259 (16%), Positives = 90/259 (34%), Gaps = 19/259 (7%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITT------KHIRSGVESRKHTPSSAIQFLT 138 L+ + +++ D II +G+ + + + P+S L+ Sbjct: 21 RQLSPITLQNYQRQLDAIIALAGETGLKSWQQCDAAIVRSFAVRSRRKGLGPASLALRLS 80 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---WSEGSQPRLA 195 ++R F W V Q + NP V PK + +D+ + + R Sbjct: 81 ALRSFFDWLVSQGELKANPAKGVSAPKAPRHLPKNIDVDDVNRLLDIDLNDPLAVRDRAM 140 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT--------VELPDGFMKLLAM 247 E + +GLR S+ ++HL + + G+ V + ++ L + Sbjct: 141 LEVMYGAGLRLSELVGLDIKHLDLDTGEVWVMGKGSKERRLPIGRNAVTWIEHWLDLRGL 200 Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAH 305 +E F++ ++++A F K G+N H +R AT ++ Sbjct: 201 FASDEEALFLSKLGKRISARNVQKRFAEWGIKQGLNSHVHPHKLRHSFATHMLESSGDLR 260 Query: 306 ELMATYGWKTVDQAETYTK 324 + G + + YT Sbjct: 261 GVQELLGHANLSTTQIYTH 279 >gi|16762185|ref|NP_457802.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29143674|ref|NP_807016.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213162145|ref|ZP_03347855.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213425411|ref|ZP_03358161.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213649576|ref|ZP_03379629.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213854889|ref|ZP_03383129.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|289829107|ref|ZP_06546781.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|34222945|sp|Q8Z3A8|XERC_SALTI RecName: Full=Tyrosine recombinase xerC gi|25299264|pir||AI0918 integrase/recombinase [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16504489|emb|CAD09371.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar Typhi] gi|29139309|gb|AAO70876.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 300 Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats. Identities = 44/259 (16%), Positives = 90/259 (34%), Gaps = 19/259 (7%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITT------KHIRSGVESRKHTPSSAIQFLT 138 L+ + +++ D II +G+ + + + P+S L+ Sbjct: 21 RQLSPITLQNYQRQLDAIIALAGETGLKSWQQCDAAIVRSFAVRSRRKGLGPASLALRLS 80 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---WSEGSQPRLA 195 ++R F W V Q + NP V PK + +D+ + + R Sbjct: 81 ALRSFFDWLVSQGELKANPAKGVSAPKAPRHLPKNIDVDDVNRLLDIDLNDPLAVRDRAM 140 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT--------VELPDGFMKLLAM 247 E + +GLR S+ ++HL + + G+ V + ++ L + Sbjct: 141 LEVMYGAGLRLSELVGLDIKHLDLDTGEVWVMGKGSKERRLPIGRNAVTWIEHWLDLRGL 200 Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAH 305 +E F++ ++++A F K G+N H +R AT ++ Sbjct: 201 FASDEEALFLSKLGKRISARNVQKRFAEWGIKQGLNSHVHPHKLRHSFATHMLESSGDLR 260 Query: 306 ELMATYGWKTVDQAETYTK 324 + G + + YT Sbjct: 261 GVQELLGHANLSTTQIYTH 279 >gi|171915713|ref|ZP_02931183.1| hypothetical protein VspiD_31120 [Verrucomicrobium spinosum DSM 4136] Length = 297 Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats. Identities = 54/289 (18%), Positives = 102/289 (35%), Gaps = 27/289 (9%) Query: 75 ISEYRKS-AHWGSLAVNSRISFESYFD----QIIRKSGDFDYRKITTKHIRSGVESRKHT 129 I + A L+VN ++ + + R+ D +TT+HI + RK Sbjct: 5 IDAFLLHLATERGLSVNYQLLVRRVLETFASWLHREHDSDDIADVTTQHISGFLGHRKGD 64 Query: 130 ---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS-- 184 PSS L ++++ F+W + +P V P+ + + ++++ Sbjct: 65 GLIPSSLRVELVALKIFFRWLAARGRRLGDPAEPVLPPRVEQSLPDTLNEPEVRRLLESV 124 Query: 185 --FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT-VELPDGF 241 + R E SGLR S+ A V++L ++ G V + Sbjct: 125 TGQEPLDLRDRAILEIFYASGLRISEVTGARVENLSLEEGWVRVTGKGNKTRLVPVGGAA 184 Query: 242 MKLLAM----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS---AHG 288 ++ P K F+N + ++ + K +A AG++ H Sbjct: 185 RDAISRYLDSARPQLVKPKTKSFIFLNRNGGQLTTARVWQIVKERAAAAGMDADRIYPHL 244 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 +R AT GA + G + + YT D+ RL + + Sbjct: 245 LRHSFATHLLGNGADLRVIQEMLGHADIATTQIYTH-VDQKRLKDTHRK 292 >gi|227489005|ref|ZP_03919321.1| site-specific tyrosine recombinase XerD [Corynebacterium glucuronolyticum ATCC 51867] gi|227091081|gb|EEI26393.1| site-specific tyrosine recombinase XerD [Corynebacterium glucuronolyticum ATCC 51867] Length = 360 Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats. Identities = 45/270 (16%), Positives = 88/270 (32%), Gaps = 24/270 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT---PSSAIQFLTSMR 141 A N+ S+ + G+ I I + ++S +S + L+++R Sbjct: 81 RGKARNTIASYRRDLASYLDFVGERSLDSIAATDIEAFLQSLGRHGLAVTSVRRMLSTIR 140 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRLAFE 197 +A + VA + + P + +++ + + + E Sbjct: 141 GFHAFARDEGIVADDVAHDITPPAMPQHLPDTLSVDEINTLIESQAGDSAVALRNKALLE 200 Query: 198 FLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKE 253 L +G R S+ V + + + + T K V + + + + Sbjct: 201 LLYGTGARISEVLSLAVDDITALEETDGILVLTGKGDKQRIVPVGSHARQAVDAYLVRGR 260 Query: 254 ----------TFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAG 301 F + M+ K AT+AG+ K S H +R AT + G Sbjct: 261 PQLNKGKSAALFLNVRGGKAMSRQSAWQVVKQAATEAGITKDISPHTLRHSFATHLLEGG 320 Query: 302 ATAHELMATYGWKTVDQAETYTK-GADRIR 330 A + G +V + YT AD +R Sbjct: 321 ADVRSVQELLGHASVTTTQIYTHITADSLR 350 >gi|154489817|ref|ZP_02030078.1| hypothetical protein PARMER_00045 [Parabacteroides merdae ATCC 43184] gi|154089259|gb|EDN88303.1| hypothetical protein PARMER_00045 [Parabacteroides merdae ATCC 43184] Length = 407 Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats. Identities = 59/353 (16%), Positives = 114/353 (32%), Gaps = 31/353 (8%) Query: 7 LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYI----N 62 P F K R + Y R + M + + Sbjct: 57 RPKFAIKHHRRKENLSLYL--IDKPRTPAERQQNKETLELAMRIRAEREQEFKESMLGYR 114 Query: 63 SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG----DFDYRKITTKH 118 + + Y S + + +I+ + D + K IT + Sbjct: 115 LKKDRAVNFLDYFQAYINSYTKKDIRMV-QIALSRFKDFLKEKYPMNECSIKPELITKEM 173 Query: 119 IRSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR--PW 174 + V + A + + ++A+ + + +PC V K ++ +R Sbjct: 174 MEQFVAYLQSRSVGEGAKSIYQRFKKVIRYAIEHDVMLKDPCKDVT-CKVDSQMLRKDVL 232 Query: 175 TKEDMQQFKSFWSEGSQP--RLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTG 230 + E++Q+ + + P R F F LY GLR D +++ N + + KT Sbjct: 233 SLEEIQKLMACHYDNENPIVRRTFIFCLYCGLRFCDVKDLTYRNVDYANRLLKFEQSKTK 292 Query: 231 -----TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284 + + + L DG + ++ P K + K +AG++K Sbjct: 293 GHSASSGVVIPLNDGLLSIIGEAPADKNCLIFDLP----TYESCCKSVKRWVKRAGIDKH 348 Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336 S H R A + GA + + G + E YT+ D+++ NS Sbjct: 349 ISWHCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYTRAVDKLKEEAINS 401 >gi|119026081|ref|YP_909926.1| site-specific tyrosine recombinase XerC [Bifidobacterium adolescentis ATCC 15703] gi|118765665|dbj|BAF39844.1| probable integrase [Bifidobacterium adolescentis ATCC 15703] Length = 329 Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats. Identities = 55/283 (19%), Positives = 100/283 (35%), Gaps = 36/283 (12%) Query: 76 SEYRKSAHWGSLAVNSRISFESYFDQ---IIRKSGDFDYRKITTKHIRSGVE--SRKHTP 130 Y K L+ N+R ++ S ++ +RK G D ++T + +R + S+ H Sbjct: 32 DAYLK--ANRGLSANTRRAYRSDVEECLVALRKQGCVDLNEVTIEDLRLWMAESSKNHAR 89 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-- 188 SS + ++R F WA + + NP S++ PK + QQ E Sbjct: 90 SSMARKTVAVRGFFAWAYDHDMASANPAASLQTPKIPDTLPAVLNETQAQQLMDRVDEDG 149 Query: 189 ---------------GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII 233 + E L +G+R ++ V + ++K G Sbjct: 150 MEARSQEPNMKKQAIALRDAAMLELLYATGMRVAELVGLDVADVTFGNRTVKVTGKGDKQ 209 Query: 234 TV-----ELPDGFMKLLA------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282 V L + + FF+ + +++ +A +AGV Sbjct: 210 RVMPFGAPADKALRDWLEHGRPVLCGDMSDDAFFLGSQGGRIDQRMVRKVVHDRAREAGV 269 Query: 283 -NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 + S H +R +AT D GA E+ G ++ + YT Sbjct: 270 PDISPHALRHSAATHMLDGGADLREVQEMLGHSSLKTTQRYTH 312 >gi|326790035|ref|YP_004307856.1| integrase family protein [Clostridium lentocellum DSM 5427] gi|326540799|gb|ADZ82658.1| integrase family protein [Clostridium lentocellum DSM 5427] Length = 374 Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats. Identities = 47/291 (16%), Positives = 97/291 (33%), Gaps = 36/291 (12%) Query: 89 VNSRISFESYFDQIIRK--SGDFDYRKITTKHIRSGVESRKHTPSSAIQFLT-SMRVLFK 145 ++ + S ++ I+ G I I++ S+ + ++ + ++R +F+ Sbjct: 84 ASTFERYMSIYNTHIKNSVIGKTSITDINQIDIQNFFNSKNDMATGVLKIMRYTIRRVFE 143 Query: 146 WAVRQEYVAINPCLSVERP--KRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSG 203 +A + + + NPC+ ++ P K KT I T ++ ++F S + F L++G Sbjct: 144 YAKKHDVIRENPCIGIKIPPSKAKTRDIIIMTLDEQEKFIEAASTRD-NKALFLTALFTG 202 Query: 204 LRCSDSCRAGVQHLQNNIFSIKT--------------------------QKTGTIITVEL 237 LR + +++ +I K G I V + Sbjct: 203 LRMGELIALKWENVDLKNGTINVCESYKRVRAYTDNGDSEYIIDKKAPKTKNGNRI-VPI 261 Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATI 296 P + +L E F N Q M K +A + + H +R AT Sbjct: 262 PTKLLPILKEIRTDNELVFCNAKGQPMTEITIRREQKRICEQAQIRYINFHALRHTYATR 321 Query: 297 SADAGATAHELMATYGWKTVDQA-ETYTKGA-DRIRLGIKNSRRISSVVDS 345 + G + G + Y D + + + + Sbjct: 322 LIENGIDVKTVSMLVGHADIQTTLNIYVHSTDDTKKNAVNTLDKFFNCKSY 372 >gi|161505543|ref|YP_001572655.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160866890|gb|ABX23513.1| hypothetical protein SARI_03708 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 300 Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats. Identities = 44/259 (16%), Positives = 92/259 (35%), Gaps = 19/259 (7%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYR------KITTKHIRSGVESRKHTPSSAIQFLT 138 L+ + ++++ D II +G+ + + + + P+S L+ Sbjct: 21 RQLSPITLLNYQRQLDAIIALAGEAGLKSWQQCDAVMVRGFAVRSRRKGLGPASLALRLS 80 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---WSEGSQPRLA 195 ++R F W V Q + NP V PK + +D+ + + R Sbjct: 81 ALRSFFDWLVSQGELKANPAKGVSAPKAPRHLPKNIDVDDVNRLLDIDLNDPLAVRDRAM 140 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT--------VELPDGFMKLLAM 247 E + +GLR S+ ++HL + + G+ V + ++ L + Sbjct: 141 LEVMYGAGLRLSELVGLDIKHLDLDTGEVWVMGKGSKERRLPIGRNAVTWIEHWLDLRGL 200 Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAH 305 +E F++ ++++A F K G+N H +R AT ++ Sbjct: 201 FASDEEALFLSKLGKRISARNVQKRFAEWGIKQGLNSHVHPHKLRHSFATHMLESSGDLR 260 Query: 306 ELMATYGWKTVDQAETYTK 324 + G + + YT Sbjct: 261 GVQELLGHANLSTTQIYTH 279 >gi|24215183|ref|NP_712664.1| integrase/recombinase XerD [Leptospira interrogans serovar Lai str. 56601] gi|45657354|ref|YP_001440.1| putative integrase/recombinase protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|34222802|sp|Q7ZAM7|XERD_LEPIN RecName: Full=Tyrosine recombinase xerD gi|73920480|sp|Q72SA5|XERD_LEPIC RecName: Full=Tyrosine recombinase xerD gi|24196257|gb|AAN49682.1| integrase/recombinase XerD [Leptospira interrogans serovar Lai str. 56601] gi|45600593|gb|AAS70077.1| putative integrase/recombinase protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 298 Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats. Identities = 43/266 (16%), Positives = 95/266 (35%), Gaps = 22/266 (8%) Query: 85 GSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGVES---RKHTPSSAIQFLTS 139 L+ NS S+ ++ + D+ K+ I + RK + + + + + Sbjct: 20 KGLSDNSIYSYGYDLNKFKNFLEKEHIDFLKVQADDIMRFLNEEKDRKISSKTIAREVVA 79 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRLA 195 +R +K+ ++ + NP +E P+ T++++++ + E + + Sbjct: 80 IRQFYKFLKDEKKLDTNPTEKIETPEVMRSIPDYLTQDEIEELFASIKEDNLYELRDKCI 139 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-KTGTIITVEL----PDGFMKLLA---- 246 FE L SGLR S++C + + ++ + K G V D + L Sbjct: 140 FELLYSSGLRISEACNLRLNDMDLEGMTLTVEGKGGRQRLVPFGEKSLDILNRYLKQSRP 199 Query: 247 --MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGA 302 + E F++ +N + + + H +R AT + A Sbjct: 200 FILKSRNCEYLFVSKKGSYINRKSVWRLLNHYIKRTSILKKVTPHTLRHSFATHLLENHA 259 Query: 303 TAHELMATYGWKTVDQAETYTKGADR 328 + G + + YT A++ Sbjct: 260 DLKSVQELLGHIDIATTQIYTHMANK 285 >gi|121998438|ref|YP_001003225.1| tyrosine recombinase XerD [Halorhodospira halophila SL1] gi|121589843|gb|ABM62423.1| tyrosine recombinase XerD [Halorhodospira halophila SL1] Length = 254 Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats. Identities = 43/235 (18%), Positives = 79/235 (33%), Gaps = 18/235 (7%) Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 + + P + + L+S+R ++ V + +P VE P+ T+ Sbjct: 15 YLAERVAAGARPRTTARLLSSLRRFYRRLVSTGERSDDPTAEVEAPRLGQPLPGALTERQ 74 Query: 179 MQQFKSF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-I 233 ++ + G + R E L +GLR S+ V + ++ G Sbjct: 75 VEALLAAPDTGDPLGLRDRCLLEVLYATGLRVSELVALRVDGVSLRQGVVRVIGKGDRER 134 Query: 234 TVELPDGFMKLLAM----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283 V L + + + E F+ + + F K A AG++ Sbjct: 135 LVPLGEEAVDWVRRYLEEVRPLLLDGRAAEALFVTRRGEGLTRQAFWYRVKRYAAAAGID 194 Query: 284 --KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336 S H +R AT + GA + G + + YT A R RL ++ Sbjct: 195 PAISPHTLRHSFATHLINHGADLRVVQMLLGHADLSTTQIYTHVA-RQRLQQLHA 248 >gi|325136023|gb|EGC58633.1| tyrosine recombinase XerD [Neisseria meningitidis M0579] gi|325202450|gb|ADY97904.1| tyrosine recombinase XerD [Neisseria meningitidis M01-240149] gi|325207798|gb|ADZ03250.1| tyrosine recombinase XerD [Neisseria meningitidis NZ-05/33] Length = 291 Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats. Identities = 46/280 (16%), Positives = 98/280 (35%), Gaps = 21/280 (7%) Query: 74 LISEYRKSAHWGS--LAVNSRISFESYFDQIIRKSGDFD--YRKITTKHIRSGVESRKHT 129 LI ++ W L+ N+ + ++I R+ + + + V Sbjct: 5 LIDRLLETL-WLDRRLSQNTLNGYRRDLEKIARRLSQSGRMLKDADEADLAAAVYVDGEQ 63 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---- 185 SS + L++ + L+ W R+ NP ++ PK T++ + + + Sbjct: 64 RSSQARALSACKRLYIWMEREGIRTDNPTRLLKPPKIDKNIPTLITEQQISRLLATPDTD 123 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG---- 240 G + + E + +GLR S++ ++ + I K V + Sbjct: 124 TPHGLRDKALLELMYATGLRVSEAVGLNFGNVDLDRGCITALGKGDKQRMVPMGQESAYW 183 Query: 241 ------FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFS 293 + L + + F++ K ++ + K A++AG+ S H +R Sbjct: 184 VERYYTEARPLLLKGRNCDALFVSQKKTGISRQLAWMIVKEYASQAGIGHISPHSLRHAF 243 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 AT G + G ++ + YT A+ G+ Sbjct: 244 ATHLVQHGLDLRVVQDMLGHADLNTTQIYTHVANVWLQGV 283 >gi|291286626|ref|YP_003503442.1| integrase family protein [Denitrovibrio acetiphilus DSM 12809] gi|290883786|gb|ADD67486.1| integrase family protein [Denitrovibrio acetiphilus DSM 12809] Length = 342 Score = 130 bits (328), Expect = 2e-28, Method: Composition-based stats. Identities = 55/338 (16%), Positives = 116/338 (34%), Gaps = 13/338 (3%) Query: 17 RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76 +H YY + L +++ + + K+ + +K T+ + Sbjct: 5 KHSNGTYYVIIDRNHKRSLGTKNKAEAERIFKALKKSDFQKK---IADLEKTETISEFFA 61 Query: 77 EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTPSSA 133 + + + + S + G+ +T K + R + +S Sbjct: 62 DCLEDYKYKK-EKATYTSMSYSLNAFEGFIGEKLLNGVTKKDLSDFTTHRLKAGYAKTSI 120 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193 + +++ F AV E +A NP ++ K + T +D+ +F + + R Sbjct: 121 NIDIRNIKAAFSKAVEWEKLAQNPLNGFKQLKIDKNLPKFLTFDDLDKFANILGDN-PLR 179 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIG 251 AF F + +G R S++ + + I+ K + + D +LL Sbjct: 180 HAFFFYVLTGCRRSEALVLTWDDIDFTRMVVHIRKTKNHEARDIPICDSLYELLNGITPK 239 Query: 252 KETFFINN-DKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMA 309 + F ++ + K T+AG + H +R A++ A +G T + Sbjct: 240 QGYLFPGKIKGTHLDKDTMTHNIKDCLTEAGFPDMRLHDLRHTFASLLALSGETLQTIRD 299 Query: 310 TYGWKTVDQAETYTK-GADRIRLGIKNSRRISSVVDSD 346 G + E Y AD ++ + + S D D Sbjct: 300 LLGHSDIRTTEIYAHLTADHLKAAVNKLKVNVSTTDKD 337 >gi|150020077|ref|YP_001305431.1| phage integrase family protein [Thermosipho melanesiensis BI429] gi|149792598|gb|ABR30046.1| phage integrase family protein [Thermosipho melanesiensis BI429] Length = 282 Score = 130 bits (328), Expect = 2e-28, Method: Composition-based stats. Identities = 51/281 (18%), Positives = 106/281 (37%), Gaps = 23/281 (8%) Query: 76 SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK------HT 129 S+Y + N+ ++ + + + ++I K I + +++ ++ Sbjct: 8 SDYLAHVRRH--SENTLKAYLKDVRKFLEYI-NKPIKEIERKDIETFLKALSKGEITENS 64 Query: 130 PS--SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 P + ++++S+ F + ++ NP ++ P+ + + T+E++++ + Sbjct: 65 PRETTISRYISSLNSFFNYLELSGTISNNPMERIKHPRLRRKIPDFLTEEEIKKLIDVFD 124 Query: 188 EGS--QPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMK 243 E + + +LA L Y+GLR S+ C + I+ K V LPD + Sbjct: 125 EETEMKKKLAISLLYYAGLRISELCNLRTTDISFIPPFLRIEMGKGRKDRLVPLPDKVLP 184 Query: 244 LLAM---TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISA 298 LL K F N K +T F W K +A + K H +R AT Sbjct: 185 LLQKYLELKNPKIYVFENEAKHVHPSTVF-RWLKDGVKRAKIKKQVHPHTLRHSYATHLI 243 Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339 G + G + Y AD+ + +++ Sbjct: 244 RKGVNIKVVQELLGHTNLSTTSIYLHVADQEK--FDAVKKL 282 >gi|325127862|gb|EGC50768.1| tyrosine recombinase XerD [Neisseria meningitidis N1568] Length = 291 Score = 130 bits (328), Expect = 2e-28, Method: Composition-based stats. Identities = 46/280 (16%), Positives = 99/280 (35%), Gaps = 21/280 (7%) Query: 74 LISEYRKSAHWGS--LAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESRKHT 129 LI ++ W L+ N+ + ++I R+ + + + V Sbjct: 5 LIDRLLETL-WLDRRLSQNTLNGYRRDLEKIARRLSQSGRTLKDADEADLAAAVYVDGEQ 63 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---- 185 SS + L++ + L+ W R+ NP ++ PK T++ + + + Sbjct: 64 RSSQARALSACKRLYIWMEREGIRTDNPTCLLKPPKIDKNIPTLITEQQISRLLAAPDTD 123 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG---- 240 G + + E + +GLR S++ ++ + I K V + Sbjct: 124 TPHGLRDKALLELMYATGLRVSEAVGLNFGNVDLDRGCITALGKGDKQRMVPMGQESAYW 183 Query: 241 ----FMKLLAMTPIGK--ETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFS 293 + + G+ + F++ K ++ + K A++AG+ S H +R Sbjct: 184 VGRYYTEARPALLKGRSCDALFVSQKKTGISRQLAWMIVKEYASQAGIGHISPHSLRHAF 243 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 AT G + G ++ + YT A+ G+ Sbjct: 244 ATHLVQHGLDLRVVQDMLGHADLNTTQIYTHVANVWLQGV 283 >gi|215486111|ref|YP_002328542.1| predicted integrase [Escherichia coli O127:H6 str. E2348/69] gi|312968948|ref|ZP_07783155.1| integrase [Escherichia coli 2362-75] gi|215264183|emb|CAS08527.1| predicted integrase [Escherichia coli O127:H6 str. E2348/69] gi|312286350|gb|EFR14263.1| integrase [Escherichia coli 2362-75] Length = 357 Score = 130 bits (328), Expect = 2e-28, Method: Composition-based stats. Identities = 61/341 (17%), Positives = 109/341 (31%), Gaps = 23/341 (6%) Query: 7 LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMS---ALTGSTPKREYINS 63 LPP + R+ Y G+ L A + L+ S K Sbjct: 12 LPPNLY---IRNNGYYCYRDPRTGKEFGLGRDRRIAITEAIQANIELLSDSGRKSLIDRI 68 Query: 64 PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123 TL + Y + + + + S I RK D I+TK + + + Sbjct: 69 KGGDAITLHVWLDRYETILTERGIRPKTLLDYASKIRAIRRKLPDKPLTDISTKEVAAML 128 Query: 124 ESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 + + +SA +++ +F+ A+ + +VA NP + K + R E ++ Sbjct: 129 NTYVAEGKAASAKLIRSTLVDVFREAIAEGHVATNPVTATRTAKSEVRRSRLTANEYVEI 188 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241 + + RLA + + +G R D CR + +N IK KTG + + L Sbjct: 189 YHAAEPLPIWLRLAMDLAVVTGQRVGDLCRMKWSDINDNHLHIKQSKTGAKLAIPLTLTI 248 Query: 242 MKL---------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-----NKSAH 287 L ET + ++ S +F +G+ + H Sbjct: 249 DALNISLADTLQKCREASSSETIIASKHHDPLSPKTVSKYFTKARNASGLSFDGNPPTFH 308 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 +R + G K+ A Y R Sbjct: 309 ELR-SLSARLYRNQIGDKFAQRLLGHKSDSMAARYRDSRGR 348 >gi|119716715|ref|YP_923680.1| tyrosine recombinase XerD [Nocardioides sp. JS614] gi|119537376|gb|ABL81993.1| tyrosine recombinase XerD subunit [Nocardioides sp. JS614] Length = 318 Score = 130 bits (328), Expect = 2e-28, Method: Composition-based stats. Identities = 44/275 (16%), Positives = 89/275 (32%), Gaps = 36/275 (13%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITT-----------KHIRSGVESRKHTPSSA 133 LA N+ S+ + + + + + + +SA Sbjct: 24 RGLATNTLTSYRRDLRRYQEYLAECGVEHLADVTEGTVAAFLVRLREGDRDHPALSATSA 83 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ-FKSFWSEGS-- 190 + + ++R ++AV A +P +V+ P + D++ ++ + G+ Sbjct: 84 ARTVVAVRGFHRFAVADGLAATDPASAVKPPTPAKRLPKALPLADVEAILEAAGAPGTTL 143 Query: 191 --QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-----TQKTGTIITVELPDGFMK 243 + R E L +G R S++ V L ++ K G V + + Sbjct: 144 ALRDRALLEVLYGTGARISEAVGLDVDDLDWGESGVEGTVLLRGKGGKERLVPVGSYARE 203 Query: 244 LLAM-------------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHG 288 + + F+N +++ A +AGV + S H Sbjct: 204 AVDAYLVRGRPELVAASARVTGGALFLNARGGRLSRQSAWAVLVRAAERAGVTRDVSPHT 263 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 +R AT D GA + G +V + YT Sbjct: 264 LRHSFATHLLDGGADVRVVQELLGHASVTTTQVYT 298 >gi|308050773|ref|YP_003914339.1| tyrosine recombinase XerD [Ferrimonas balearica DSM 9799] gi|307632963|gb|ADN77265.1| tyrosine recombinase XerD [Ferrimonas balearica DSM 9799] Length = 295 Score = 130 bits (328), Expect = 2e-28, Method: Composition-based stats. Identities = 47/275 (17%), Positives = 93/275 (33%), Gaps = 23/275 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESRK---HTPSSAIQFLTS 139 L+ N+ ++ S + D + + IR + RK +S + L++ Sbjct: 18 RGLSDNTLAAYRSDLCRFAEFLSERDTPLARADSLDIRDYLAHRKSIGAAKTSTARSLSA 77 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195 +R F VR+ +P + +PK + ++ +++ + + Sbjct: 78 LRRFFADLVRRGEREADPMALIAQPKMDRKLPDSLSEAEVEALLDAPECDDPIQLRDKAM 137 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGK-- 252 E L +GLR S+ ++ + K G V + + L + Sbjct: 138 LELLYATGLRVSELTGLQMEQVSLRQGVVRVVGKGGKERLVPMGEQAQHQLEVYLREARG 197 Query: 253 --------ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302 + F + +M F K A ++G+ K S H +R AT + GA Sbjct: 198 MLLGVNRSDVLFPSKRGVQMTRQTFWHRVKFYAQQSGITKPLSPHTLRHAFATHLLNHGA 257 Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 + G + + YT A + RL + Sbjct: 258 DLRVVQLLLGHSDLSTTQIYTHVA-QARLTELHRE 291 >gi|257892241|ref|ZP_05671894.1| phage integrase [Enterococcus faecium 1,231,408] gi|257828620|gb|EEV55227.1| phage integrase [Enterococcus faecium 1,231,408] Length = 223 Score = 130 bits (328), Expect = 2e-28, Method: Composition-based stats. Identities = 34/206 (16%), Positives = 76/206 (36%), Gaps = 17/206 (8%) Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQ 191 ++S+R ++ ++ +P ++ PK+ + T ++++ G + Sbjct: 1 MISSLRRFHQFLRQERITDHDPMQHIDTPKKAQKLPSTLTLTEVEKLIEAPDTTKTLGIR 60 Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAM--- 247 R E + +G+R S+ + L ++ ++T K + L D ++ L Sbjct: 61 DRAILEVMYATGMRVSELIGLKLGDLHLSLGLVQTVGKGDKERIIPLGDYAIQWLERYLD 120 Query: 248 -------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISA 298 + F+NN + ++ K +AG+ K + H +R AT Sbjct: 121 EARPLLVKDASEMHVFVNNHGKGLSRQGIWKNLKQLVREAGIYKEVTPHTLRHSFATHLL 180 Query: 299 DAGATAHELMATYGWKTVDQAETYTK 324 + GA + G + + YT Sbjct: 181 ENGADLRTVQELLGHADISTTQIYTH 206 >gi|85859869|ref|YP_462071.1| integrase [Syntrophus aciditrophicus SB] gi|85722960|gb|ABC77903.1| integrase [Syntrophus aciditrophicus SB] Length = 334 Score = 130 bits (328), Expect = 2e-28, Method: Composition-based stats. Identities = 48/256 (18%), Positives = 102/256 (39%), Gaps = 16/256 (6%) Query: 93 ISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS-SAIQFLTSMRVLFKWAVRQE 151 +S F+++I G+ +KI K + + + A + L ++ LF V ++ Sbjct: 71 KENKSLFEKLILAWGNK--KKIERKDVDDYLSRVANNSHYVANKELRFIKALFNHGVERD 128 Query: 152 YVAINPCLSVER-PKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSC 210 + NP ++ P K + P +ED+++ F + +L +L + R ++ Sbjct: 129 MINSNPAEKIKFFPIEKNKKYIP-PEEDIRKVFEFC--NDEQKLYLTAVLCTMARINEIN 185 Query: 211 RAGVQHLQNNIFSIKTQKTG----TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNA 266 + + + + +KT+K+ T + L + ++ P E F + D + Sbjct: 186 KLKWEDIHKDYLILKTRKSKNSDLTERIIPLNETLKEVFDTVPRIAEYVFCHEDGKPYFY 245 Query: 267 TQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 + K AGV H +R + A+ A++G ++ A G + + Y + Sbjct: 246 RS--KFLKTACRMAGVRYFGYHALRHYGASRLANSGVPITDIQALLGHQRPTTTDIYLQS 303 Query: 326 ADRIRLGIKNSRRISS 341 R L I + + S Sbjct: 304 I-RKSL-IGAMKNLES 317 >gi|46446092|ref|YP_007457.1| site-specific tyrosine recombinase XerC [Candidatus Protochlamydia amoebophila UWE25] gi|46399733|emb|CAF23182.1| putative XerC Protein [Candidatus Protochlamydia amoebophila UWE25] Length = 329 Score = 130 bits (328), Expect = 2e-28, Method: Composition-based stats. Identities = 48/262 (18%), Positives = 91/262 (34%), Gaps = 25/262 (9%) Query: 94 SFESYFDQIIRKSGDFDYRKITTKHIR---SGVESRKHTPSSAIQFLTSMRVLFKWAVRQ 150 + ESY + G I K IR + + + + + + L+S+R F++ Q Sbjct: 57 ARESYQQRQSCHDGILKLEDIDRKTIRGFLAWLSANQQNKRTIARRLSSLRSFFRYLQTQ 116 Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKEDM----QQFKSFWSEGSQPRLAFEFLLYSGLRC 206 + INP +E PK + + E + +Q + G + R E SGLR Sbjct: 117 NLIQINPTEELESPKLNKKLPVSLSYEQVSLLFEQPDTTSYLGFRDRTIMELFYSSGLRV 176 Query: 207 SDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLL---------------AMTPI 250 S+ Q + +IK K + + K + Sbjct: 177 SELVSLDRQDFDYSNLTIKLKGKGKKQRLIPITKNAAKWIQSYLLHIERYQNLETHSAES 236 Query: 251 GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELM 308 F+N ++ F TK+G+ + H +R AT + G + Sbjct: 237 DSNAIFLNKWGTRLTTRSVDRKFDLYLTKSGLAGKVTPHTIRHTIATHWLENGMDLKTIQ 296 Query: 309 ATYGWKTVDQAETYTKGADRIR 330 G +++ YT+ + +++ Sbjct: 297 LLLGHRSLSTTTIYTQVSTKLK 318 >gi|42526714|ref|NP_971812.1| integrase/recombinase XerD [Treponema denticola ATCC 35405] gi|41817029|gb|AAS11723.1| integrase/recombinase XerD [Treponema denticola ATCC 35405] Length = 274 Score = 130 bits (328), Expect = 3e-28, Method: Composition-based stats. Identities = 41/254 (16%), Positives = 88/254 (34%), Gaps = 26/254 (10%) Query: 96 ESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAI 155 E D +I + + D SG+ ++ + + + ++ F++ + + Sbjct: 6 EHMSDSLIENATEADCIDFILHRSESGIMAK-----TIAKDIAALNSFFRFLIIEGVRKD 60 Query: 156 NPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCR 211 NP S+ERPKR+ R + +++ + S + R FE + +GLR S+ Sbjct: 61 NPSESIERPKREKTLPRVLSPDEVDSLFAAIPLDSPNNIRDRALFELIYSAGLRVSEIVN 120 Query: 212 AGVQHL--QNNIFSIKTQKTGTIITVE-----------LPDGFMKLLAMTPIGK----ET 254 ++ + ++ + + I + + +LL + Sbjct: 121 LKMEDIFYDEDLIKVTGKGNKERIVPFGSAAKYWLKQYILEARTELLKPKHPENTLISGS 180 Query: 255 FFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWK 314 F+NN + + +G+ H +R AT GA + G Sbjct: 181 VFLNNRGAVLTRKGIWKRINELSNFSGIETKVHTLRHSYATHLLAGGADLRSVQCLLGHS 240 Query: 315 TVDQAETYTKGADR 328 + + YT D+ Sbjct: 241 DISTTQVYTHIEDK 254 >gi|312130418|ref|YP_003997758.1| tyrosine recombinase xerd [Leadbetterella byssophila DSM 17132] gi|311906964|gb|ADQ17405.1| tyrosine recombinase XerD [Leadbetterella byssophila DSM 17132] Length = 296 Score = 130 bits (328), Expect = 3e-28, Method: Composition-based stats. Identities = 48/270 (17%), Positives = 92/270 (34%), Gaps = 25/270 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKS-GDFDYRKITTKHIRSGVE---SRKHTPSSAIQFLTSM 140 LA NS S+ + G + H+ + +E + S+ + L+ + Sbjct: 18 RGLAPNSVESYLRDLGALASFLDGKVAPNTVEEDHLYAFIETISEMGLSSSTQARMLSGI 77 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS----FWSEGSQPRLAF 196 + F++ ++ +P + PK + ++++ EG++ R Sbjct: 78 KAFFEFLRLEKIRDTDPTALLVGPKLIRKLPEVLQVKEVEALLEGIDLSTPEGTRNRAML 137 Query: 197 EFLLYSGLRCSDSCRAGVQH--LQNNIFSIKTQKTGTIITVELPDGF-----------MK 243 E L SGLR S+ + + ++ K V + Sbjct: 138 EVLYSSGLRVSEVVNLQISRCFFEEGYLQVR-GKGSKTRLVPIGKQAIHYTEIYKTLVRP 196 Query: 244 LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAG 301 L + ++ F+N ++ K A AG+ K S H +R AT + G Sbjct: 197 SLDIKKGYEDHLFLNRRGAALSRVMVFYVVKNAAEAAGIQKTISPHTLRHSFATHLVEGG 256 Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRL 331 A + G +++ E YT DR L Sbjct: 257 ADLRAVQEMLGHESILTTEIYTH-LDRAFL 285 >gi|91202076|emb|CAJ75136.1| similar to site-specific tyrosine recombinase [Candidatus Kuenenia stuttgartiensis] Length = 351 Score = 130 bits (328), Expect = 3e-28, Method: Composition-based stats. Identities = 56/266 (21%), Positives = 101/266 (37%), Gaps = 14/266 (5%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH- 128 T K L+ + K H +++N + S+ + ++ GD IT K + SRK+ Sbjct: 57 TFKDLMERFMKE-HAPKVSLNMQKSYTTSAKHLLSFFGDLSLLAITPKKVNDYKVSRKNL 115 Query: 129 --TPSSAIQFLTSMRVLFKWAV-RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 P++ + L + F AV E++ NP + + K E R + ++ ++ Sbjct: 116 GKKPATINKELAMLSKAFCLAVKEWEWIRDNPASKISKEKEANERDRWLSDDEEKRLLEN 175 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVEL----PD 239 E + F+ L++GLR + + + I+ K G T+ L D Sbjct: 176 SPEWLSDIIVFD--LHTGLRQDELLSLTWDRVDLFRKVIIIQESKNGKPRTIPLNQISLD 233 Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISA 298 M+ + + + F ++ KMN F KA + N H VR AT A Sbjct: 234 ILMEKTKVRSLKGDFVFPSSVMTKMNRRNLVRAFDIAKEKASIQNFHFHDVRHCFATRLA 293 Query: 299 DAGATAHELMATYGWKTVDQAETYTK 324 G + + G + + Y Sbjct: 294 QRGVDIYRISKLLGHLNITMTQRYAH 319 >gi|224369851|ref|YP_002604015.1| site-specific recombinase XerD (DNA replication, recombination and repair) [Desulfobacterium autotrophicum HRM2] gi|223692568|gb|ACN15851.1| site-specific recombinase XerD (DNA replication, recombination and repair) [Desulfobacterium autotrophicum HRM2] Length = 297 Score = 130 bits (328), Expect = 3e-28, Method: Composition-based stats. Identities = 44/279 (15%), Positives = 96/279 (34%), Gaps = 28/279 (10%) Query: 74 LISEYRKS-AHWGSLAVNSRISFESYFDQIIR-KSGDFDYRKITT--------------- 116 +++++ ++ + + ++ ++ + IT Sbjct: 2 VVTQFLQTLSSEKGYSPHTIRAYGGDLTAFLGFCFPGKPVAAITDEQLLKEIRDSETNPV 61 Query: 117 KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176 + + +K T + + L++++ F + V + +NP V PK + T Sbjct: 62 RGFLMDLAKKKVTRRTISRRLSALKSFFNYLVVVGKIEVNPAQGVSAPKLPRSIPQFLTV 121 Query: 177 EDM----QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232 +++ K+ + R FE +G+R S+ V + ++ + G Sbjct: 122 DELFTLLDSIKTRTVVDKRNRAVFELFYSTGMRVSELSNLNVGDIDRESHLVRVRGKGNR 181 Query: 233 -ITVELPDGFMKLLA--MTPIGKE--TFFINNDKQKMNATQFSIWFKAKATKAGV--NKS 285 V + D +K + T I E F+N D + + + G+ S Sbjct: 182 ERLVPVGDRALKAVDDYRTCIDGEFGALFLNRDAHRFSDSSIRRVLSVLVKACGLGVPVS 241 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R AT DAGA + G ++ + YT Sbjct: 242 PHTLRHSFATHMLDAGADLRGIQEILGHASLSSTQIYTH 280 >gi|312876773|ref|ZP_07736752.1| tyrosine recombinase XerD [Caldicellulosiruptor lactoaceticus 6A] gi|311796504|gb|EFR12854.1| tyrosine recombinase XerD [Caldicellulosiruptor lactoaceticus 6A] Length = 291 Score = 130 bits (327), Expect = 3e-28, Method: Composition-based stats. Identities = 43/278 (15%), Positives = 100/278 (35%), Gaps = 23/278 (8%) Query: 74 LISEYRKSAHWGSL-AVNSRISFESYFDQIIRKSGDFDYRKITTK-----HIRSGVESRK 127 +I + + + N+ S+ + I + + T ++ Sbjct: 3 IIEAFGNHLQRQNRFSQNTISSYLRDAKKYIEFLDNIKIKLENTSQATLIAYIISMQKSG 62 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + S+ ++ + S++V + + Q V I + +E PK + + T++++++ S Sbjct: 63 KSNSTIVRAIVSLKVFYDFLKTQNIVDIG-KIEIEPPKLEKSPPQILTRDEVEKLLSCPK 121 Query: 188 E----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243 E G + + E L +G+R S+ + + I + + + + Sbjct: 122 EDDIKGIRDKAMLELLYATGIRVSELINLNLDDINLEHGYIICKNKKRDRVIPIGSYAIS 181 Query: 244 LLAMTPI----------GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRK 291 + +E F+N + ++M F K A AG++K + H +R Sbjct: 182 AVERYLRHSRPYLAKNKDEEALFLNFNGERMTRQGFWKIVKFYAQSAGIDKEITPHVLRH 241 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 AT + GA + G + + Y + A+ Sbjct: 242 SFATHLIENGADVRAVQQMLGHADISTTQRYLQVANVK 279 >gi|259046718|ref|ZP_05737119.1| integrase/recombinase XerC [Granulicatella adiacens ATCC 49175] gi|259036614|gb|EEW37869.1| integrase/recombinase XerC [Granulicatella adiacens ATCC 49175] Length = 318 Score = 130 bits (327), Expect = 3e-28, Method: Composition-based stats. Identities = 41/265 (15%), Positives = 89/265 (33%), Gaps = 25/265 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRK------ITTKHIRSGVESRKHTPSSAIQFLT 138 + + ++E + + + + + SS +FL+ Sbjct: 17 RRYSPETIHAYERDIQHFCDYLTEVPITSWNDVSVVDVRIYLGVLHRENYNRSSISRFLS 76 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRL 194 S+R + + V ++ V NP SV K K + ++++++F + + + Sbjct: 77 SLRSFYHFLVERKAVESNPFASVSYKKGKMLLPEFFYEDEIEKFINSIDGNQSLDQRNKA 136 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPD------------GF 241 E L +G+R S+ ++ L +N + K V + D G Sbjct: 137 LVEVLYATGMRVSELTNLTLEQLDLDNSIILVIGKGSKERYVPIGDFARTALETYLEEGR 196 Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISAD 299 L+A F+N+ + + ++G+ H +R AT + Sbjct: 197 KDLMAKERKEHFFVFVNHLGDPLTTNGVRYILEKLIQESGLTLKIHPHMLRHTFATHLLN 256 Query: 300 AGATAHELMATYGWKTVDQAETYTK 324 GA + G ++ + YT Sbjct: 257 NGADMRTVQELLGHVSLSSTQIYTH 281 >gi|116328373|ref|YP_798093.1| site-specific recombinase XerD [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116331099|ref|YP_800817.1| site-specific recombinase XerD [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116121117|gb|ABJ79160.1| Site-specific recombinase XerD [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116124788|gb|ABJ76059.1| Site-specific recombinase XerD [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 298 Score = 130 bits (327), Expect = 3e-28, Method: Composition-based stats. Identities = 42/266 (15%), Positives = 95/266 (35%), Gaps = 22/266 (8%) Query: 85 GSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGVES---RKHTPSSAIQFLTS 139 L+ NS S+ ++ + D+ K+ I + RK + + + + + Sbjct: 20 KGLSDNSIYSYGYDLNKFKNFLEKEHIDFLKVQANDIMRFLNEERDRKISSKTIAREVVA 79 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRLA 195 +R +K+ ++ + NP +E P+ T++++++ + E + + Sbjct: 80 IRQFYKFLKDEKKLDTNPTEKIETPEVMRNIPDYLTQDEIEELFASIREDNLYELRDKCI 139 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLLAM------- 247 FE L SGLR S++C + + + K G V + + ++ Sbjct: 140 FELLYSSGLRISEACNLRLSDMDLEGMILTVEGKGGRQRLVPFGEKSLDIMNRYLKQSRP 199 Query: 248 ---TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302 E F++ +N + ++K + H +R AT + A Sbjct: 200 FILKARNCEYLFVSKKGSYINRKSVWRLLNHYIKRTSISKKVTPHTLRHSFATHLLENHA 259 Query: 303 TAHELMATYGWKTVDQAETYTKGADR 328 + G + + YT A++ Sbjct: 260 DLKSVQELLGHIDISTTQIYTHMANK 285 >gi|297516448|ref|ZP_06934834.1| Phage integrase family protein [Escherichia coli OP50] Length = 356 Score = 130 bits (327), Expect = 3e-28, Method: Composition-based stats. Identities = 63/343 (18%), Positives = 116/343 (33%), Gaps = 25/343 (7%) Query: 7 LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHE---STFIPAYMSALTGSTPKREYINS 63 LPP + R+ Y G+ L + I A + +G K Sbjct: 12 LPPNLY---IRNNGYYCYRDPRTGKEFGLGRDRRIAITEAIQANIELFSGHKHKPLTARI 68 Query: 64 PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123 TL + Y K + + I++ S I R D ITTK I + + Sbjct: 69 NSDNSVTLHSWLDRYEKILASREIKQKTLINYMSKIKAIRRGLPDAPLEDITTKEIAAML 128 Query: 124 ESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 K +SA +++ F+ A+ + ++ NP + K + R E ++ Sbjct: 129 NGYIDKGKAASAKLIRSTLSDAFREAIAEGHITTNPVAATRAAKSEVRRSRLTADEYLKI 188 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE----- 236 +++ S RLA E + +G R D C + + ++ KTG I + Sbjct: 189 YQAAESSPCWLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAIPTTLHV 248 Query: 237 ----LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-----NKSAH 287 + +G ET + ++ +++ S +F +G+ + H Sbjct: 249 DALGISMKETLDKCKEILGGETIIASTRREPLSSGTVSRYFMRARKASGLSFEGDPPTFH 308 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 +R + + + G K+ A Y DR R Sbjct: 309 ELR-SLSARLYEKQISDKFAQHLLGHKSDTMASQY--RDDRGR 348 >gi|323701841|ref|ZP_08113511.1| tyrosine recombinase XerC [Desulfotomaculum nigrificans DSM 574] gi|323533145|gb|EGB23014.1| tyrosine recombinase XerC [Desulfotomaculum nigrificans DSM 574] Length = 300 Score = 130 bits (327), Expect = 3e-28, Method: Composition-based stats. Identities = 42/271 (15%), Positives = 93/271 (34%), Gaps = 26/271 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKS--------GDFDYRKITTKHIRSGVESRKHT---PSSA 133 + + ++ +++ + I +I ++ R+ + + S+ Sbjct: 16 KNFSDHTIEAYQKDLFEGIDFFSTVLNVCDEKLHPSQIDSRLFRNFLSHMQERNLQRSTI 75 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS---FWSEGS 190 + L + R F++ R+ V NP L + PK++ + +++ ++ G Sbjct: 76 ARRLAAWRTFFRFLYREGLVQTNPLLRMANPKQEKRLPKFLYQDEAKELVESPGNTPLGV 135 Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAM-- 247 + R E L +G+R S+ + HL + ++ K V + D + L Sbjct: 136 RDRSLLELLYATGIRVSELVALDLYHLDLSRGYLRVWGKGSKERLVPIHDRAVAALKRYL 195 Query: 248 -------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISA 298 F+N +++ + G+ K S H +R AT Sbjct: 196 TEARPKLAQPDCPAVFVNYKGSRLSDRGVRKLIDKYCQQVGLTKNISPHVIRHSFATHLL 255 Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRI 329 D GA + G ++ + YT + Sbjct: 256 DNGADLRSVQELLGHVSLSTTQIYTHVTKQK 286 >gi|157144439|ref|YP_001451758.1| site-specific tyrosine recombinase XerC [Citrobacter koseri ATCC BAA-895] gi|157081644|gb|ABV11322.1| hypothetical protein CKO_00153 [Citrobacter koseri ATCC BAA-895] Length = 300 Score = 130 bits (327), Expect = 3e-28, Method: Composition-based stats. Identities = 41/259 (15%), Positives = 86/259 (33%), Gaps = 19/259 (7%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITT------KHIRSGVESRKHTPSSAIQFLT 138 L+ + ++++ D II +G+ + + + P+S L+ Sbjct: 21 RQLSPITLLNYQRQLDAIIALAGETGLQSWQQCDAAMVRAFAVRSRRKGLGPASLALRLS 80 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQPRLA 195 ++R F W V Q + NP V PK + +D+ + + R Sbjct: 81 ALRSFFDWLVSQGELNANPAKGVSAPKAPRHLPKNIDVDDINRLLDIDLNDPLAVRDRAM 140 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMKLLAMT------ 248 E + +GLR S+ ++HL + K + + + + Sbjct: 141 LEVMYGAGLRLSELVGLDIKHLDLDTGEVWVMGKGSKERRLPIGRNAVAWIEHWLDLRGL 200 Query: 249 -PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAH 305 + F++ ++++A F K G+N H +R AT ++ Sbjct: 201 FGSDDDALFLSKLGKRISARNVQKRFAEWGIKQGLNSHVHPHKLRHSFATHMLESSGDLR 260 Query: 306 ELMATYGWKTVDQAETYTK 324 + G + + YT Sbjct: 261 GVQELLGHANLSTTQIYTH 279 >gi|254293092|ref|YP_003059115.1| integrase family protein [Hirschia baltica ATCC 49814] gi|254041623|gb|ACT58418.1| integrase family protein [Hirschia baltica ATCC 49814] Length = 381 Score = 130 bits (327), Expect = 3e-28, Method: Composition-based stats. Identities = 65/346 (18%), Positives = 123/346 (35%), Gaps = 24/346 (6%) Query: 15 RTRH-GKIIYYF--R-KGHGRRIRLPYPHESTFIPAYMSALT-----GSTPKREYINSPR 65 R R G+ Y+ R KG RRI + T A A + S + Sbjct: 31 RIRKSGRKSYFVMSRYKGRMRRITIGQHGPLTAEDARKQAKSILHDLSSGIDPTEDKTKI 90 Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVE 124 ++ T+K L + L ++ ++ + I+ K G + ++ + I + Sbjct: 91 RQSGTVKKLCERFMIEYVPQHLKPSTASEYKRSIEIFILPKLGRLIVKDVSRQDIIALHH 150 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVA--INPCLSVERPKRKTEGIRPWTKEDMQQF 182 + TP A + L + +LF A NPC +++ + + R + E++Q+ Sbjct: 151 DMRGTPYQANRTLGVLSILFSQAEVWGLRDEFTNPCRGIKKFREEKRE-RFLSLEELQRL 209 Query: 183 -KSFWSE---GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTIITVE 236 ++ E + L+ +G R + + H+ + + KTG T+ Sbjct: 210 GRALHEETALAPSAVACIKLLILTGCRLGEIQKLKWVHVDLDRQLLLLPDSKTGKK-TIY 268 Query: 237 LPDGFMKLLAMTPIG-KETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSA 294 L + LL TP F I KQ T ++ A + + H +R A Sbjct: 269 LGTSAVDLLKSTPRQLDNPFVIAGYKQGQYLTDLQKPWRRIRKAANLEDVRIHDLRHTYA 328 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340 + + G + + G Y AD ++ + +IS Sbjct: 329 STAVANGESLPMIGKLLGHSQPQTTARYAHLADIQ--AVEVADKIS 372 >gi|239627800|ref|ZP_04670831.1| phage integrase [Clostridiales bacterium 1_7_47_FAA] gi|239517946|gb|EEQ57812.1| phage integrase [Clostridiales bacterium 1_7_47FAA] Length = 331 Score = 130 bits (327), Expect = 3e-28, Method: Composition-based stats. Identities = 47/260 (18%), Positives = 92/260 (35%), Gaps = 13/260 (5%) Query: 83 HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE----SRKHTPSSAIQFLT 138 + + +V++ ++ + ++ G ++I + + + +RK + S+ Sbjct: 64 RFENYSVSTVNQYQRFLTDLLIYVG-KPVQEIAGEDVVECLNYYEQARKISSSTKDHKRR 122 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEF 198 F + + Y++ NP +V+ K E T ++++ + + E Sbjct: 123 IASSFFTFLHERGYISKNPMSTVDPIKYVAEIREALTSREVEKLRIACGTNIRDNAVLEL 182 Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAM--TPIGKETF 255 L SG R S+ V+ + K K V D M+ L Sbjct: 183 FLASGCRVSEVVSMRVEDMDLQAGCGKVLGKGKKERMVFFNDRAMEYLERYLGDRRSGAV 242 Query: 256 FINND--KQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMATY 311 ++ Q + + A KAG+ K H +R AT + + G L Sbjct: 243 ILSKRAPYQGLKKNALENIIRKIAKKAGLGKRVFPHLLRHTFATRALNKGMPLPTLCDLM 302 Query: 312 GWKTVDQAETYTK-GADRIR 330 G +V+ Y K GA +IR Sbjct: 303 GHSSVETTRIYAKNGAGKIR 322 >gi|218961949|ref|YP_001741724.1| site-specific recombinase, phage integrase family [Candidatus Cloacamonas acidaminovorans] gi|167730606|emb|CAO81518.1| site-specific recombinase, phage integrase family [Candidatus Cloacamonas acidaminovorans] Length = 298 Score = 130 bits (327), Expect = 3e-28, Method: Composition-based stats. Identities = 48/276 (17%), Positives = 96/276 (34%), Gaps = 25/276 (9%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIR------KSGDFDYRKITTKHIRSGVESRK 127 I+++ + + +++ +Q ++G+ D + IT +IR Sbjct: 4 YIADFCNYLALEGKSPRTITAYKLDLEQFHSFIQRYFENGEVDIKGITVLNIRDFFRFLN 63 Query: 128 HTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 P S + ++ F++ R ++ NP ++RPK + + +T+E+++ S Sbjct: 64 EKPDCNRSLARKSAALNSFFRYCKRSGFIQNNPMEKIKRPKYEVPLPKCFTEEEVRTLLS 123 Query: 185 FW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-ELPD 239 G + + E L SGLR S+ +Q + ++ G + L Sbjct: 124 IPDTDSPFGIRNKAILETLYSSGLRISELAGIRLQDIDLKRGLVRVTGKGNKQRIVPLGS 183 Query: 240 GFMKLLAMTPIGKETF---------FINNDKQKMNATQFSIWFKAK--ATKAGVNKSAHG 288 ++ + + F F+ + + Q I K S H Sbjct: 184 YAIEAINNYLKVRPQFMRENSPDLLFLTKSGKAFDTKQLDIILKRYFELVAKAKGYSPHS 243 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 +R AT GA + G + ETYT Sbjct: 244 LRHSFATHLLSRGADLRAIQELLGHSLLSTTETYTH 279 >gi|38233776|ref|NP_939543.1| site-specific tyrosine recombinase XerD [Corynebacterium diphtheriae NCTC 13129] gi|38200037|emb|CAE49713.1| integrase/recombinase [Corynebacterium diphtheriae] Length = 311 Score = 130 bits (327), Expect = 3e-28, Method: Composition-based stats. Identities = 51/299 (17%), Positives = 101/299 (33%), Gaps = 37/299 (12%) Query: 69 TTLKWLISEYRKSAH-WGSLAVNSRISFESYFDQ---IIRKSGDFDYRKITTKHIRSGVE 124 ++ + ++ ++ N+ ++ ++ ++ G D I+ + I V+ Sbjct: 2 GSISNIARQWLTHLAVEKGVSDNTLSNYRRDLERYTRWLQVQGITDIENISAQDIERYVQ 61 Query: 125 SRKHTPSSAIQFLT----------SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174 + S + R L ++A+ + V + V P Sbjct: 62 ELRKGDSDTGKKPLAASSAARALIVARGLHRFALLENLVENDVSADVSPPAMGRHLPDTL 121 Query: 175 TKEDMQQF-------KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL----QNNIFS 223 + E++ + + E + EFL +G R S++ V + +N Sbjct: 122 SVEEVNRLIEAIPIDDAASPENLRDCALLEFLYATGARISEAVGLVVDDVAAIVENEGIV 181 Query: 224 IKTQKTGTIITVELPDGFMKLL---------AMTPIGKETFFINNDKQKMNATQFSIWFK 274 T K V + D + L AM+ F+N +++ K Sbjct: 182 RITGKGNKQRIVPVGDQCLSALERYVVRSRPAMSKGKSHALFLNKRGGQLSRQSAWQILK 241 Query: 275 AKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIR 330 A +AG+ K S H +R AT + GA + G +V + YT AD +R Sbjct: 242 NSAQRAGIEKDISPHTLRHSFATHLLEGGADVRVVQELLGHSSVTTTQIYTHVTADNLR 300 >gi|197262705|ref|ZP_03162779.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197240960|gb|EDY23580.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] Length = 300 Score = 130 bits (327), Expect = 3e-28, Method: Composition-based stats. Identities = 43/259 (16%), Positives = 90/259 (34%), Gaps = 19/259 (7%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITT------KHIRSGVESRKHTPSSAIQFLT 138 L+ + ++++ D II +G+ + + + P+S L+ Sbjct: 21 RQLSPITLLNYQRQLDAIIALAGETGLKSWQQCDAAIVRSFAVRSRRKGLGPASLALRLS 80 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---WSEGSQPRLA 195 ++R F W V Q + NP V PK + +D+ + + R Sbjct: 81 ALRSFFDWLVSQGELKANPAKGVSAPKAPRHLPKNIDVDDVNRLLDIDLNDPLAVRDRAM 140 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT--------VELPDGFMKLLAM 247 E + +GLR S+ ++HL + + G+ V + ++ L + Sbjct: 141 LEVMYGAGLRLSELVGLDIKHLDLDTGEVWVMGKGSKERRLPIGRNAVTWIEHWLDLRGL 200 Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAH 305 +E F++ ++++ F K G+N H +R AT ++ Sbjct: 201 FASDEEALFLSKLGKRISVRNVQKRFAEWGIKQGLNSHVHPHKLRHSFATHMLESSGDLR 260 Query: 306 ELMATYGWKTVDQAETYTK 324 + G + + YT Sbjct: 261 GVQELLGHANLSTTQIYTH 279 >gi|289578559|ref|YP_003477186.1| integrase [Thermoanaerobacter italicus Ab9] gi|289528272|gb|ADD02624.1| integrase family protein [Thermoanaerobacter italicus Ab9] Length = 398 Score = 130 bits (327), Expect = 3e-28, Method: Composition-based stats. Identities = 71/353 (20%), Positives = 126/353 (35%), Gaps = 50/353 (14%) Query: 26 RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWG 85 RK + + I++ ES + L + E T K I ++ K Sbjct: 27 RKRYTKTIKVYGKSESAKLKEAEKELAKFVAEIEGNLFVEPSKLTFKAFIEKWLKEYAEN 86 Query: 86 SLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH------------TPSS 132 +LA + ++ + +II G KI H+ + K +P + Sbjct: 87 NLAPKTLHRYKEMLEKRIIPALGHLKLDKIKPIHVLEFLNMLKEDGARLDGKEGGLSPQT 146 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF-KSFWSEGSQ 191 + +F+ AV+ + + NP ++E PK + + +E++++ K+ +E + Sbjct: 147 IKHHYRLIHAIFEDAVKWQLIPSNPASNIEPPKVPKKEAGYYNEEEVRKLIKALENEKLK 206 Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQ--------------KTG-TIIT 234 ++A L +GLR + +H+ NNI I+ KT + Sbjct: 207 YKVAVMVTLAAGLRIGELMGLKWEHIDFENNIIKIEQANQYLPGEGTFTKNPKTETSKRL 266 Query: 235 VELPDGFMKLLAMTP--------------IGKETFFINNDKQKMNATQFSIWFKAKATKA 280 + +P M LL I F + Q M F+ WF K Sbjct: 267 IAMPKEIMDLLREYKKEQNIERLKKGSMWIDTGYVFTQWNGQPMYPYTFTKWFPKFLEKH 326 Query: 281 GVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYT---KGADR 328 G+ + + H +R SAT+ +AG + A G Y K ADR Sbjct: 327 GLRRITFHQLRHTSATLLINAGENVRTVSARLGHSNTSTTMNIYAHALKSADR 379 >gi|218442340|ref|YP_002380665.1| hypothetical protein PCC7424_5613 [Cyanothece sp. PCC 7424] gi|218175444|gb|ACK74172.1| hypothetical protein PCC7424_5613 [Cyanothece sp. PCC 7424] Length = 273 Score = 130 bits (327), Expect = 3e-28, Method: Composition-based stats. Identities = 48/242 (19%), Positives = 94/242 (38%), Gaps = 8/242 (3%) Query: 88 AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT--PSSAIQFLTSMRVLFK 145 + + IS++ + Q + G R +T + V T P + + +++ LF Sbjct: 22 SKTTVISYQCHVKQFLEFVG-KPLRDVTLDDLSLWVNRLNLTYQPVTVANKILTVKSLFS 80 Query: 146 WAVRQEYVAINPCLSVERPKRK-TEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGL 204 +A R Y+ +N ++ PK K T R ++++ + + + + GL Sbjct: 81 FACRVGYLTVNVGSFIKSPKLKDTLAERILDPSEVKRLINAAP-NERDSVLLSLMYGCGL 139 Query: 205 RCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM 264 R S+ C L+N ++ + T I + +P L P E F++ ++ Sbjct: 140 RVSEVCGLNWSDLKNGKATVFGKGAKTRIVI-IPPNLWDRLMKLPRDGEAVFMSRRGNRL 198 Query: 265 NATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 T K +GV S+H +R A+ + +AG L + G ++ E Y Sbjct: 199 ERTYIHKMIKECCHLSGVSEKASSHWLRHSHASHAVEAGCNLRLLQQSLGHSKLETTEKY 258 Query: 323 TK 324 Sbjct: 259 LH 260 >gi|87307014|ref|ZP_01089160.1| integrase/recombinase [Blastopirellula marina DSM 3645] gi|87290387|gb|EAQ82275.1| integrase/recombinase [Blastopirellula marina DSM 3645] Length = 300 Score = 130 bits (327), Expect = 3e-28, Method: Composition-based stats. Identities = 45/266 (16%), Positives = 93/266 (34%), Gaps = 26/266 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDF--------DYRKITTKHIRSGVESRKHTPSSAIQF 136 + + + S+ + ++ + + + + + V + ++ + Sbjct: 16 RNASDLTIKSYGEDLEALVDYLEELYAAPASTGEVSTLDLRGYVAAVSDAGYAETTVSRR 75 Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQP 192 L SMR F++A R+E + +P + P+RK + T +++ + S G + Sbjct: 76 LASMRSFFRFAQREELIDRSPAKPLRNPRRKRKLPHFLTGDEISKLLSAPPANTSAGLRD 135 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------ELPDGFMK 243 R FE +GLR S+ + I+ + G + L D + Sbjct: 136 RAIFETTYSAGLRVSELVGLNDSDIDAEQGLIRIRGKGKRERLGPLGSYAIKALHDWLSQ 195 Query: 244 ---LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISA 298 ++ F N ++ + AG++ S H +R AT Sbjct: 196 RTLSARAAAAKEKPVFTNKFGNRLTTRSVGRMLEKYIAIAGLDTRTSPHTLRHSFATHLL 255 Query: 299 DAGATAHELMATYGWKTVDQAETYTK 324 DAGA + G K++ + YT Sbjct: 256 DAGADIRSVQELLGHKSLVTTQIYTH 281 >gi|16767219|ref|NP_462834.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|167553868|ref|ZP_02347612.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167993887|ref|ZP_02574980.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168233881|ref|ZP_02658939.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168822681|ref|ZP_02834681.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194470289|ref|ZP_03076273.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|197251815|ref|YP_002148873.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|224585764|ref|YP_002639563.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|238912952|ref|ZP_04656789.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|2497413|sp|P55888|XERC_SALTY RecName: Full=Tyrosine recombinase xerC gi|1916339|gb|AAC45778.1| site-specific recombinase [Salmonella enterica subsp. enterica serovar Typhimurium] gi|6960253|gb|AAF33443.1| S. typhimurium site-specific recombinase (XERC) (SP:P55888); contains similarity to Pfam family PF00589 ('Phage' integrase family), score=227.1, E=2.5e-64, N=1 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|16422513|gb|AAL22793.1| putative site-specific integrase/recombinase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|194456653|gb|EDX45492.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|197215518|gb|ACH52915.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|205321790|gb|EDZ09629.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205328137|gb|EDZ14901.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205332099|gb|EDZ18863.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205340961|gb|EDZ27725.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|224470292|gb|ACN48122.1| tyrosine recombinase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|261249072|emb|CBG26933.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267996228|gb|ACY91113.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301160464|emb|CBW19994.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312915067|dbj|BAJ39041.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320088359|emb|CBY98119.1| Tyrosine recombinase xerC [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321225467|gb|EFX50524.1| Tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323132296|gb|ADX19726.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] Length = 300 Score = 130 bits (327), Expect = 3e-28, Method: Composition-based stats. Identities = 44/259 (16%), Positives = 91/259 (35%), Gaps = 19/259 (7%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITT------KHIRSGVESRKHTPSSAIQFLT 138 L+ + ++++ D II +G+ + + + P+S L+ Sbjct: 21 RQLSPITLLNYQRQLDAIIALAGETGLKSWQQCDAAIVRSFAVRSRRKGLGPASLALRLS 80 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---WSEGSQPRLA 195 ++R F W V Q + NP V PK + +D+ + + R Sbjct: 81 ALRSFFDWLVSQGELKANPAKGVSAPKAPRHLPKNIDVDDVNRLLDIDLNDPLAVRDRAM 140 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT--------VELPDGFMKLLAM 247 E + +GLR S+ ++HL + + G+ V + ++ L + Sbjct: 141 LEVMYGAGLRLSELVGLDIKHLDLDTGEVWVMGKGSKERRLPIGRNAVTWIEHWLDLRGL 200 Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAH 305 +E F++ ++++A F K G+N H +R AT ++ Sbjct: 201 FASDEEALFLSKLGKRISARNVQKRFAEWGIKQGLNSHVHPHKLRHSFATHMLESSGDLR 260 Query: 306 ELMATYGWKTVDQAETYTK 324 + G + + YT Sbjct: 261 GVQELLGHANLSTTQIYTH 279 >gi|56415803|ref|YP_152878.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197364733|ref|YP_002144370.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|56130060|gb|AAV79566.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197096210|emb|CAR61807.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 300 Score = 130 bits (327), Expect = 3e-28, Method: Composition-based stats. Identities = 44/259 (16%), Positives = 91/259 (35%), Gaps = 19/259 (7%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITT------KHIRSGVESRKHTPSSAIQFLT 138 L+ + ++++ D II +G+ + + + P+S L+ Sbjct: 21 RQLSPITLLNYQRQLDAIIALAGETGLKSWQQCDAAIVRSFAVRSRRKGLGPASLALRLS 80 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---WSEGSQPRLA 195 ++R F W V Q + NP V PK + +D+ + + R Sbjct: 81 ALRSFFDWLVSQGELKANPAKGVSAPKAPRHLPKNIDVDDVNRLLDIDLNDPLAVRDRAM 140 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT--------VELPDGFMKLLAM 247 E + +GLR S+ ++HL + + G+ V + ++ L + Sbjct: 141 LEVMYGAGLRLSELVGLDIKHLDLDTGEVWVMGKGSKERRLPIGRNAVTWIEHWLDLRGL 200 Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAH 305 +E F++ ++++A F K G+N H +R AT ++ Sbjct: 201 FASDEEALFLSKLGKRISARNVQKRFAEWGIKQGLNSHVHPHKLRHSFATHMLESSGDLR 260 Query: 306 ELMATYGWKTVDQAETYTK 324 + G + + YT Sbjct: 261 GVQELLGHANLSTTQIYTH 279 >gi|312622379|ref|YP_004023992.1| integrase family protein [Caldicellulosiruptor kronotskyensis 2002] gi|312202846|gb|ADQ46173.1| integrase family protein [Caldicellulosiruptor kronotskyensis 2002] Length = 328 Score = 130 bits (326), Expect = 3e-28, Method: Composition-based stats. Identities = 47/286 (16%), Positives = 97/286 (33%), Gaps = 43/286 (15%) Query: 85 GSLAVNSRISFESYFDQI-----------------IRKSGDFDYRKITTKHIRSGVESR- 126 + + N+ + I + D + +++ S Sbjct: 21 KNKSPNTIKEYYYDLRNFLRYLKAKDLNMLSQIEKIEDLENIDVSNFEIEKLKALTLSNL 80 Query: 127 -----------KHTPSSAIQFLTSMRVLFKWAV-RQEYVAINPCLSVERPKRKTEGIRPW 174 + P + + + S+R FK+ + + + NP +E PK R Sbjct: 81 YEYFSFLATHFNNGPYARARKVASIRSFFKYLYSKAKLIPDNPAKDLESPKLGKRNPRYL 140 Query: 175 TKEDMQQFKSFWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232 T ++ ++ S ++ R L GLR S+ + +++++ I + Sbjct: 141 TLDESKKLLSAIDGENKERDFAIITIFLNCGLRLSELVNINLSDIKDDMLRIVGKGNKER 200 Query: 233 ITV---ELPDGFMKLLAMTPI----GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284 I D L + P K+ F++ K++++ + AG+N+ Sbjct: 201 IIYLNKACKDAIENYLKVRPTEGVKDKDALFLSERKKRISRRTVQYIVEKYVKMAGINQK 260 Query: 285 --SAHGVRKFSATISADAGA-TAHELMATYGWKTVDQAETYTKGAD 327 SAH +R +AT+ G L G +++ E YT D Sbjct: 261 KISAHKLRHTAATLMYRHGKVDIRSLQTILGHQSISTTEIYTHVND 306 >gi|167628445|ref|YP_001678944.1| tyrosine recombinase xerd, putative [Heliobacterium modesticaldum Ice1] gi|167591185|gb|ABZ82933.1| tyrosine recombinase xerd, putative [Heliobacterium modesticaldum Ice1] Length = 328 Score = 130 bits (326), Expect = 3e-28, Method: Composition-based stats. Identities = 44/287 (15%), Positives = 96/287 (33%), Gaps = 34/287 (11%) Query: 85 GSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSGVE---SRKHTPSSAIQFLT 138 L+ N+ ++ + + + G D +T ++ + R + ++ + L Sbjct: 38 RGLSGNTIDAYRRDLADLAAFLAERGIGDPADVTRSDLQDYLYHTYRRGLSAATRARRLA 97 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS---EGSQPRLA 195 +++ F + + +P ++ P+ + E++ G + R Sbjct: 98 AIKGYFGFLFDEAIRRDDPTELIDGPRLQRLLPDVLNVEEVAALLQAPPRTIVGLRDRAM 157 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFMKLLA-------- 246 E + GLR S+ + ++ ++ ++ G V L + Sbjct: 158 LETMYACGLRVSELIALTLDQVRLDLGLVRVVGKGMKERIVPLGGLAAAAIEEYLSRTRG 217 Query: 247 --MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302 ++ F+N + + F KA A +AG+ K + H +R AT GA Sbjct: 218 TLAGHGAEKHLFLNQRGKPLTRQGFWKILKAYAAEAGIAKEVTPHTLRHSFATHLLSNGA 277 Query: 303 TAHELMATYGWKTVDQAETYT------------KGADRIRLGIKNSR 337 + G V + YT + R RL ++ R Sbjct: 278 DLRAVQEMLGHADVSTTQIYTHLTMGRLREVYDRSHPRARLAVRAQR 324 >gi|313837516|gb|EFS75230.1| tyrosine recombinase XerD [Propionibacterium acnes HL037PA2] gi|314927276|gb|EFS91107.1| tyrosine recombinase XerD [Propionibacterium acnes HL044PA1] gi|314972722|gb|EFT16819.1| tyrosine recombinase XerD [Propionibacterium acnes HL037PA3] gi|328907874|gb|EGG27637.1| site-specific tyrosine recombinase XerD [Propionibacterium sp. P08] Length = 306 Score = 130 bits (326), Expect = 3e-28, Method: Composition-based stats. Identities = 41/268 (15%), Positives = 86/268 (32%), Gaps = 29/268 (10%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKI------TTKHIRSGVESRKHTPSSAIQFLT 138 L+ N+ ++ + + R + + R ++ P+S + + Sbjct: 20 RGLSDNTVQAYRRDLLRYQKYLDSRGIRSLAEVTRVDVEEFRRYLDQLGLAPASVTRCVV 79 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRL 194 ++R L +AV + + R + T E ++ + EG + Sbjct: 80 AVRNLHHFAVESGQAKTDVTAGISPGTRSRRLPKALTMEQVEALLAAPDTSTVEGLRDTA 139 Query: 195 AFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKT-QKTGTIITVELPDGFMKLLAMTP 249 E L +G R S+ C V + + ++ K V L + + Sbjct: 140 LLELLYGTGARVSEVCALDVDDIRPVLDDPDLGLRLIGKGDKERIVPLGSYAAQAVDAWL 199 Query: 250 I-----------GKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSAT 295 + G+ +N ++++ + AG++ S H +R AT Sbjct: 200 VRGRPAWAQLGNGEHALLLNTRGRRLSRQSAWTVIRRAGEAAGLDVEHLSPHSLRHSYAT 259 Query: 296 ISADAGATAHELMATYGWKTVDQAETYT 323 D GA + G +V + YT Sbjct: 260 HLLDGGADIRVVQELLGHSSVTTTQIYT 287 >gi|225375588|ref|ZP_03752809.1| hypothetical protein ROSEINA2194_01213 [Roseburia inulinivorans DSM 16841] gi|225212567|gb|EEG94921.1| hypothetical protein ROSEINA2194_01213 [Roseburia inulinivorans DSM 16841] Length = 286 Score = 130 bits (326), Expect = 4e-28, Method: Composition-based stats. Identities = 38/262 (14%), Positives = 85/262 (32%), Gaps = 22/262 (8%) Query: 85 GSLAVNSRISFESYFDQII---RKSGDFDYRKITTK---HIRSGVESRKHTPSSAIQFLT 138 + N+ +S+E ++I G +T + +E P++ + + Sbjct: 18 KQTSENTEVSYERDLKKMILYLTAHGVDRIDAVTPEVLNSYVIELEQSGLKPATVSRSVA 77 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRL 194 SM+ F + ++ + +P ++ PK + + T E + + + G + + Sbjct: 78 SMKAFFHYEELEQRTSADPAFELKAPKVEKKAPTILTTEQTNRLLAQPKDNSAKGLRDKA 137 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET 254 E L +G+R S+ + + + I + + + L Sbjct: 138 MLELLYATGIRVSELISLKLTDVNFDTGYITCVDSHKGRMIPMTPVAKDALVRYIRDGRP 197 Query: 255 ----------FFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGA 302 F N M+ F K+ +AG+ + H +R A +GA Sbjct: 198 QLVKDENSIWLFTNCSGDAMSRQGFWKLIKSYGKRAGIESEITPHMLRHSFAAHLVCSGA 257 Query: 303 TAHELMATYGWKTVDQAETYTK 324 + G + + Y Sbjct: 258 DLKSVQEILGHSDISTTQMYAH 279 >gi|330910760|gb|EGH39270.1| phage integrase [Escherichia coli AA86] Length = 357 Score = 130 bits (326), Expect = 4e-28, Method: Composition-based stats. Identities = 61/341 (17%), Positives = 109/341 (31%), Gaps = 23/341 (6%) Query: 7 LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMS---ALTGSTPKREYINS 63 LPP + R+ Y G+ L A + L+ S K Sbjct: 12 LPPNLY---IRNNGYYCYRDPRTGKEFGLGRDRRIAITEAIQANIELLSDSGRKSLIDRI 68 Query: 64 PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123 TL + Y + + + + S I RK D I+TK + + + Sbjct: 69 KGGDAITLHVWLDRYETILTERGIRPKTLLDYASKIRAIRRKLPDKPLTDISTKEVAAMI 128 Query: 124 ESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 + + +SA +++ +F+ A+ + +VA NP + K + R E ++ Sbjct: 129 NTYVAEGKAASAKLIRSTLVDVFREAIAEGHVATNPVTATRTAKSEVRRSRLTANEYVEI 188 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241 + + RLA + + +G R D CR + +N IK KTG + + L Sbjct: 189 YHAAKPLPIWLRLAMDLAVVTGQRVGDLCRMKWSDINDNHLHIKQSKTGAKLAIPLTLTI 248 Query: 242 MKL---------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-----NKSAH 287 L ET + ++ S +F +G+ + H Sbjct: 249 DALNISLADTLQKCREASSSETIIASKHHDPLSPKTVSKYFTKARNASGLSFDGNPPTFH 308 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 +R + G K+ A Y R Sbjct: 309 ELR-SLSARLYRNQIGDKFAQRLLGHKSDSMAARYRDSRGR 348 >gi|284920553|emb|CBG33615.1| integrase [Escherichia coli 042] Length = 356 Score = 130 bits (326), Expect = 4e-28, Method: Composition-based stats. Identities = 61/343 (17%), Positives = 113/343 (32%), Gaps = 25/343 (7%) Query: 7 LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMS---ALTGSTPKREYINS 63 LPP + R+ Y G+ L A + +G K Sbjct: 12 LPPNLY---IRNNGYYCYRDPRTGKEFGLGRDRRIAITEAIQANIELFSGHKHKPLTARI 68 Query: 64 PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123 TL + Y K + + I++ S I R D ITTK I + + Sbjct: 69 NSDNSVTLHSWLDRYEKILANRGIKQKTLINYMSKIKAIRRGLPDAPLENITTKEIAAML 128 Query: 124 ESRKH--TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 +SA +++ F+ A+ + ++ NP + K + R E ++ Sbjct: 129 NGYIDEGKAASAKLIRSTLSDAFREAIAEGHITTNPVAATRAAKSEVRRSRLTADEYLKI 188 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE----- 236 +++ S RLA E + +G R D C + + ++ KTG I + Sbjct: 189 YQAAESSPCWLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAIPTTLHV 248 Query: 237 ----LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-----NKSAH 287 + +G ET + ++ +++ S +F +G+ + H Sbjct: 249 DALGISMKETLDKCKEILGGETIIASTRREPLSSGTVSRYFMRARKASGLSFEGDPPTFH 308 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 +R + + + G K+ A Y DR R Sbjct: 309 ELR-SLSARLYEKQISDKFAQHLLGHKSDTMASQY--RDDRGR 348 >gi|25028109|ref|NP_738163.1| site-specific tyrosine recombinase XerD [Corynebacterium efficiens YS-314] gi|259507166|ref|ZP_05750066.1| tyrosine recombinase XerD [Corynebacterium efficiens YS-314] gi|34222804|sp|Q7ZAN4|XERD_COREF RecName: Full=Tyrosine recombinase xerD gi|23493393|dbj|BAC18363.1| putative integrase/recombinase [Corynebacterium efficiens YS-314] gi|259165247|gb|EEW49801.1| tyrosine recombinase XerD [Corynebacterium efficiens YS-314] Length = 304 Score = 130 bits (326), Expect = 4e-28, Method: Composition-based stats. Identities = 49/270 (18%), Positives = 88/270 (32%), Gaps = 30/270 (11%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTK----------HIRSGVESRKH-TPSSA 133 L+ N+ S+ ++ I+ +R GV+ R + SSA Sbjct: 18 RGLSSNTLSSYRRDIERYCDWLEAARIGDISEIATATVEAYVMDLRRGVDGRAPLSASSA 77 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-------W 186 + L +R L K+A+ + V ++ V P + +++ Sbjct: 78 GRALIVVRGLHKFALAEGLVGVDVAADVSPPSTGRHLPDTLSVPEVETLIDAIPTSDIAT 137 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL-QNNIFSIKTQKTGTIITVE--------L 237 + R E L +G R S++ V + T K V + Sbjct: 138 PVDIRDRALLEVLYGTGARISEAVGLMVDDVTHTPEVLRITGKGSKQRMVPYGSMARAAV 197 Query: 238 PDGFMKLLAMTPIGK-ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSA 294 D ++ G+ F+N ++ K A +AG+ K S H +R A Sbjct: 198 DDYLVRARPALSKGRTPVLFLNQRGGPLSRQSAWAALKKAAGRAGIAKDISPHTLRHSFA 257 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTK 324 T + GA + G +V + YT Sbjct: 258 THLLEGGADVRVVQELLGHSSVTTTQIYTH 287 >gi|191166609|ref|ZP_03028438.1| integrase [Escherichia coli B7A] gi|190903414|gb|EDV63134.1| integrase [Escherichia coli B7A] Length = 357 Score = 130 bits (326), Expect = 4e-28, Method: Composition-based stats. Identities = 61/341 (17%), Positives = 112/341 (32%), Gaps = 23/341 (6%) Query: 7 LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHE---STFIPAYMSALTGSTPKREYINS 63 LPP + R+ Y G+ L + I A + L+ S K Sbjct: 12 LPPNLY---IRNNGYYCYRDPRTGKEFGLGRDRRIAITEAIQANIELLSDSGRKSLIDRI 68 Query: 64 PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123 TL + Y + + + + + S I RK D I+TK + + + Sbjct: 69 KGGDAITLHVWLDRYERILTERGIRPKTLLDYASKIRAIRRKLPDKPLTDISTKEVAAML 128 Query: 124 ESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 + + +SA +++ +F+ A+ + +VA NP + K + R E ++ Sbjct: 129 NTYVAEGKAASAKLIRSTLVDVFREAIAEGHVATNPVTATRTAKSEVRRSRLTANEYVEI 188 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241 + + RLA + + +G R D CR + +N I+ KTG + + L Sbjct: 189 YHAAEPLPIWLRLAMDLAVVTGQRVGDLCRMKWSDINDNHLHIEQSKTGAKLAIPLTLTI 248 Query: 242 MKL---------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-----NKSAH 287 L ET + ++ S +F +G+ + H Sbjct: 249 DALNISLADTLQKCREASSSETIIASKHHDPLSPKTVSKYFTKARNASGLSFDGNPPTFH 308 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 +R + G K+ A Y R Sbjct: 309 ELR-SLSARLYRNQIGDKFAQRLLGHKSDSMAARYRDSRGR 348 >gi|62182418|ref|YP_218835.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|62130051|gb|AAX67754.1| putative integrase/recombinase, site-specific [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|322716911|gb|EFZ08482.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 300 Score = 130 bits (326), Expect = 4e-28, Method: Composition-based stats. Identities = 44/259 (16%), Positives = 91/259 (35%), Gaps = 19/259 (7%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITT------KHIRSGVESRKHTPSSAIQFLT 138 L+ + ++++ D II +G+ + + + P+S L+ Sbjct: 21 RQLSPITLLNYQRQLDAIIALAGEAGLKSWQQCDAAIVRSFAVRSRRKGLGPASLALRLS 80 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---WSEGSQPRLA 195 ++R F W V Q + NP V PK + +D+ + + R Sbjct: 81 ALRSFFDWLVSQGELKANPAKGVSAPKAPRHLPKNIDVDDVNRLLDIDLNDPLAVRDRAM 140 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT--------VELPDGFMKLLAM 247 E + +GLR S+ ++HL + + G+ V + ++ L + Sbjct: 141 LEVMYGAGLRLSELVGLDIKHLDLDTGEVWVMGKGSKERRLPIGRNAVTWIEHWLDLRGL 200 Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAH 305 +E F++ ++++A F K G+N H +R AT ++ Sbjct: 201 FASDEEALFLSKLGKRISARNVQKRFAEWGIKQGLNSHVHPHKLRHSFATHMLESSGDLR 260 Query: 306 ELMATYGWKTVDQAETYTK 324 + G + + YT Sbjct: 261 GVQELLGHANLSTTQIYTH 279 >gi|312875927|ref|ZP_07735917.1| integrase family protein [Caldicellulosiruptor lactoaceticus 6A] gi|311797408|gb|EFR13747.1| integrase family protein [Caldicellulosiruptor lactoaceticus 6A] Length = 325 Score = 130 bits (326), Expect = 4e-28, Method: Composition-based stats. Identities = 52/284 (18%), Positives = 105/284 (36%), Gaps = 22/284 (7%) Query: 66 KKPTTLKWL---ISEYRKSAHWGSLAVNSRISFESYFDQI-IRKSGDFDYRKITTKHIRS 121 K P T+K + + + L + S+I + I + + +T ++ Sbjct: 23 KSPNTIKEYYYDLRTFLRYLKAKDLNILSQIEKIEDLENIDVSNFEIEKLKTLTLSNLYE 82 Query: 122 GVE----SRKHTPSSAIQFLTSMRVLFKWAV-RQEYVAINPCLSVERPKRKTEGIRPWTK 176 + P + + + S+R FK+ + + + NP +E PK R T Sbjct: 83 YFSFLATRFNNGPYARARKVASIRSFFKYLYSKAKLIPDNPAKDLESPKLGKRNPRYLTL 142 Query: 177 EDMQQFKSFWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT 234 ++ ++ S ++ R L GLR S+ + +++++ I + I Sbjct: 143 DESKKLLSSIDGENKERDFAIITLFLNCGLRLSELVNINLSDIKDDMLRIVGKGNKERII 202 Query: 235 V---ELPDGFMKLLAMTPI----GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--- 284 D L + P K+ F++ K++++ + AG+N+ Sbjct: 203 YLNKACKDAIENYLKVRPTEGVKDKDALFLSERKKRISRRTVQYIVEKYVKMAGINQKKI 262 Query: 285 SAHGVRKFSATISADAGA-TAHELMATYGWKTVDQAETYTKGAD 327 SAH +R +AT+ G L G +++ E YT D Sbjct: 263 SAHKLRHTAATLMYRHGKVDIRSLQTILGHQSISTTEIYTHVND 306 >gi|198244691|ref|YP_002217878.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205354490|ref|YP_002228291.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207859151|ref|YP_002245802.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|197939207|gb|ACH76540.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205274271|emb|CAR39290.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|206710954|emb|CAR35322.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|326625666|gb|EGE32011.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326629624|gb|EGE35967.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 300 Score = 130 bits (326), Expect = 4e-28, Method: Composition-based stats. Identities = 44/259 (16%), Positives = 90/259 (34%), Gaps = 19/259 (7%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITT------KHIRSGVESRKHTPSSAIQFLT 138 L+ + +++ D II +G+ + + + P+S L+ Sbjct: 21 RQLSPITVQNYQRQLDAIIALAGETGLKSWQQCDAAIVRSFAVRSRRKGLGPASLALRLS 80 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---WSEGSQPRLA 195 ++R F W V Q + NP V PK + +D+ + + R Sbjct: 81 ALRSFFDWLVSQGELKANPAKGVSAPKAPRHLPKNIDVDDVNRLLDIDLNDPLAVRDRAM 140 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT--------VELPDGFMKLLAM 247 E + +GLR S+ ++HL + + G+ V + ++ L + Sbjct: 141 LEVMYGAGLRLSELVGLDIKHLDLDTGEVWVMGKGSKERRLPIGRNAVTWIEHWLDLRGL 200 Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAH 305 +E F++ ++++A F K G+N H +R AT ++ Sbjct: 201 FASDEEALFLSKLGKRISARNVQKRFAEWGIKQGLNSHVHPHKLRHSFATHMLESSGDLR 260 Query: 306 ELMATYGWKTVDQAETYTK 324 + G + + YT Sbjct: 261 GVQELLGHANLSTTQIYTH 279 >gi|120610000|ref|YP_969678.1| tyrosine recombinase XerD [Acidovorax citrulli AAC00-1] gi|120588464|gb|ABM31904.1| tyrosine recombinase XerD [Acidovorax citrulli AAC00-1] Length = 309 Score = 130 bits (326), Expect = 4e-28, Method: Composition-based stats. Identities = 46/276 (16%), Positives = 94/276 (34%), Gaps = 25/276 (9%) Query: 86 SLAVNSRISFESYF----DQIIRKSGDFD--YRKITTKHIRSGVESR--KHTPSSAIQFL 137 L+ N+ ++ + D H+++ +R + +SA + L Sbjct: 29 GLSRNTLAAYRRDLALYAQWLGEHVPDTAGMLDATMEHHLQAYFAARHAQTRATSANRRL 88 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK----SFWSEGSQPR 193 T +R F+WA+R+ +AI+P + ++ ++ + + ++ + + G + R Sbjct: 89 TVLRRYFQWALRERRIAIDPTVRLQAARQPLRVPKTLSAAQVEALLQSPDTSTALGLRDR 148 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-IITVELPDGFMKLLAM----- 247 E + SGLR ++ H ++ G+ V + + L Sbjct: 149 AMLELMYASGLRVTELVTLKTYHAGLAEGVLRVMGKGSKERLVPFGEVAAQWLQRYLDHA 208 Query: 248 -----TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADA 300 + F+ M F + K A AG++ S H +R AT + Sbjct: 209 RADILAGQRTDDLFVTRRGAGMTRAMFWVVVKKHAQSAGIHVPLSPHTLRHAFATHLLNH 268 Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336 GA + G + YT A + Sbjct: 269 GADLRVVQLLLGHADISTTTIYTHVARERLKALHAQ 304 >gi|325473776|gb|EGC76964.1| integrase/recombinase XerD [Treponema denticola F0402] Length = 267 Score = 130 bits (326), Expect = 4e-28, Method: Composition-based stats. Identities = 40/250 (16%), Positives = 87/250 (34%), Gaps = 26/250 (10%) Query: 100 DQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCL 159 D +I + + D SG+ ++ + + + ++ F++ + + NP Sbjct: 3 DSLIENATEADCIDFILHRSESGIMAK-----TIAKDIAALNSFFRFLIIEGVRKDNPSE 57 Query: 160 SVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQ 215 S+ERPKR+ R + +++ + S + R FE + +GLR S+ ++ Sbjct: 58 SIERPKREKTLPRVLSPDEVDSLFAAIPLDSPNNIRDRALFELIYSAGLRVSEIVNLKME 117 Query: 216 HL--QNNIFSIKTQKTGTIITVE-----------LPDGFMKLLAMTPIGK----ETFFIN 258 + ++ + + I + + +LL + F+N Sbjct: 118 DIFYDEDLIKVTGKGNKERIVPFGSAAKYWLKQYILEARTELLKPKHPENTLISGSVFLN 177 Query: 259 NDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318 N + + +G+ H +R AT GA + G + Sbjct: 178 NRGAVLTRKGIWKRINELSNFSGIETKVHTLRHSYATHLLAGGADLRSVQCLLGHSDIST 237 Query: 319 AETYTKGADR 328 + YT D+ Sbjct: 238 TQVYTHIEDK 247 >gi|312793099|ref|YP_004026022.1| tyrosine recombinase xerd [Caldicellulosiruptor kristjanssonii 177R1B] gi|312180239|gb|ADQ40409.1| tyrosine recombinase XerD [Caldicellulosiruptor kristjanssonii 177R1B] Length = 291 Score = 130 bits (326), Expect = 4e-28, Method: Composition-based stats. Identities = 43/278 (15%), Positives = 99/278 (35%), Gaps = 23/278 (8%) Query: 74 LISEYRKSAHWGSL-AVNSRISFESYFDQIIRKSGDFDYRKITTK-----HIRSGVESRK 127 +I + + + N+ S+ + I + + T ++ Sbjct: 3 IIEAFGNHLQRQNRFSQNTISSYLRDAKKYIEFLDNIKIKLENTSQATLIAYIISMQKSG 62 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + S+ + + S++V + + Q V I + +E PK + + T++++++ S Sbjct: 63 KSNSTIARAIVSLKVFYDFLKTQNIVDIG-KIEIEPPKLEKSPPQILTRDEVEKLLSCPK 121 Query: 188 E----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243 E G + + E L +G+R S+ + + I + + + + Sbjct: 122 EDDIKGIRDKAMLELLYATGIRVSELINLNLDDINLEHGYIICKNKKRDRVIPIGSYAIS 181 Query: 244 LLAMTPI----------GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRK 291 + +E F+N + ++M F K A AG++K + H +R Sbjct: 182 AVERYLRHSRPYLAKNKDEEALFLNFNGERMTRQGFWKIVKFYAQSAGIDKEITPHVLRH 241 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 AT + GA + G + + Y + A+ Sbjct: 242 SFATHLIENGADVRAVQQMLGHADISTTQRYLQVANVK 279 >gi|55981508|ref|YP_144805.1| putative phage integrase/recombinase [Thermus thermophilus HB8] gi|55772921|dbj|BAD71362.1| putative phage integrase/recombinase [Thermus thermophilus HB8] Length = 293 Score = 130 bits (326), Expect = 4e-28, Method: Composition-based stats. Identities = 45/273 (16%), Positives = 101/273 (36%), Gaps = 14/273 (5%) Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--- 125 T+ + L+ N+ + +++ GD ++T +R+ + Sbjct: 3 GTITDWAEAWLLDCRARGLSPNTIGYYRDAVKAMVKVVGDKPMAELTADDLRAFLVKSFE 62 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 +P + R +WAV++ + ++P + PK + + ++++ + Sbjct: 63 DGLSPGGVAARWRAARAFVRWAVKEGALGVDPTGKIRPPKVPEADLPVVREWEVKKLLAA 122 Query: 186 WSEGSQPRL--AFEFLLY-SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL-PDGF 241 G P A +L+ +GLR S+ V ++ ++ +K G + V + + Sbjct: 123 AEMGKNPLRDKALVMVLWDTGLRASEVLGLRVSDVKAEAVRVR-RKGGAVQWVPVSLPTY 181 Query: 242 MKLLA-----MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSAT 295 +LA P + F+ + + + A AG+ K H R+ +A Sbjct: 182 RAILAYARAERPPSDHDALFLTRSGLPLAYDGLKMVLRRLAEYAGLPPKPPHAFRRGAAV 241 Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADR 328 G ++ L A G K+ Y + A++ Sbjct: 242 AMVKNGMPSYALQAMLGHKSPVMTAHYVRLAEK 274 >gi|154488853|ref|ZP_02029702.1| hypothetical protein BIFADO_02161 [Bifidobacterium adolescentis L2-32] gi|154082990|gb|EDN82035.1| hypothetical protein BIFADO_02161 [Bifidobacterium adolescentis L2-32] Length = 308 Score = 130 bits (326), Expect = 4e-28, Method: Composition-based stats. Identities = 55/283 (19%), Positives = 99/283 (34%), Gaps = 36/283 (12%) Query: 76 SEYRKSAHWGSLAVNSRISFESYFDQ---IIRKSGDFDYRKITTKHIRSGVES--RKHTP 130 Y K+ L+ N+R ++ S ++ +RK G D ++T + +R + + H Sbjct: 11 DAYLKANR--GLSANTRRAYRSDVEECLVALRKQGCVDLNEVTIEDLRLWMAKSSKNHAR 68 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-- 188 SS + ++R F WA + + NP S++ PK + QQ E Sbjct: 69 SSMARKTVAVRGFFAWAYDHDMASANPAASLQTPKIPDTLPAVLNETQAQQLMDRVDEDG 128 Query: 189 ---------------GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII 233 + E L +G+R ++ V + ++K G Sbjct: 129 MEARSQEPNMKKQAIALRDAAMLELLYATGMRVAELVGLDVADVTFGNRTVKVTGKGDKQ 188 Query: 234 TV-----ELPDGFMKLLA------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282 V L + + FF+ + ++ +A KAGV Sbjct: 189 RVMPFGAPADKALRDWLEHGRPVLCGDMSDDAFFLGSQGGRIGQRMVRKVVHDRARKAGV 248 Query: 283 -NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 + S H +R +AT D GA E+ G ++ + YT Sbjct: 249 PDISPHALRHSAATHMLDGGADLREVQEMLGHSSLKTTQRYTH 291 >gi|119899508|ref|YP_934721.1| integrase/recombinase [Azoarcus sp. BH72] gi|119671921|emb|CAL95835.1| integrase/recombinase [Azoarcus sp. BH72] Length = 305 Score = 130 bits (326), Expect = 4e-28, Method: Composition-based stats. Identities = 52/274 (18%), Positives = 95/274 (34%), Gaps = 23/274 (8%) Query: 86 SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS----GVESRKHTPSSAIQFLTSMR 141 LA N+ + S Q + I + SR+ P+S + +++ R Sbjct: 28 GLAANTIAGYRSDLAQFGAWLASRGTQLIEADESQLTAYLAEFSRRAKPASQRRLMSAWR 87 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRLAFE 197 ++ + Q +A +P + ++ P R ++ ++ + G + R E Sbjct: 88 RFYRGLLGQRRIAQDPTVQLDAPVTGERFPRTLSEAQVESLLAAPDVDTIHGLRDRSMLE 147 Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------ELPDGFMKLLAMT 248 L SGLR S+ + + I+ G+ + L + Sbjct: 148 LLYASGLRVSELVELKLFAISTGEGVIRVFGKGSKERLVPTGDIALEWLGRYLREARPAL 207 Query: 249 PIGK--ETFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKFSATISADAGAT 303 G+ + F++ M F K A KAG+ S H +R AT + GA Sbjct: 208 LRGRTCDEVFVSQRGAGMTRQMFWRIIKQYAPKAGIPAQRISPHTLRHAFATHLINHGAD 267 Query: 304 AHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 + G + + YT A R RL ++R Sbjct: 268 LRVVQLLLGHADISTTQIYTHVA-RERLKQLHAR 300 >gi|260575109|ref|ZP_05843110.1| integrase family protein [Rhodobacter sp. SW2] gi|259022731|gb|EEW26026.1| integrase family protein [Rhodobacter sp. SW2] Length = 313 Score = 130 bits (326), Expect = 4e-28, Method: Composition-based stats. Identities = 51/270 (18%), Positives = 96/270 (35%), Gaps = 32/270 (11%) Query: 90 NSRISFESYF----DQIIRKSGDFDYRKITTKHIRSGV-ESRKHTPSSAIQFLTSMRVLF 144 N+++ + D + R+ GDF T ++ ++ + L+S+R L+ Sbjct: 25 NTQLGYGRDLADFADWLARQGGDFATASRATVEAYLVFCGAQGLAAATRARRLSSIRQLY 84 Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-------SEGSQPRLAFE 197 ++AV + + A NP L ++ P + + + ++++ +E ++ E Sbjct: 85 RFAVEEGWRADNPALRLKGPAQAQHLPQVLSLAEVERLLQAARDKGRTGAEQARNAALLE 144 Query: 198 FLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFMKLLA---------- 246 L +G+R S+ V ++ + + K G V L LA Sbjct: 145 LLYATGMRVSELVGLPVAAVRGDPRMILVRGKGGKERMVPLSPPARAALADWLAQRDTAE 204 Query: 247 ------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATIS 297 P K F + + F K A +AGV+ + H +R AT Sbjct: 205 AVAVKAGKPASKHLFPNRSAAGHLGREVFYALIKDIAVRAGVDPSKVTPHTLRHAFATHL 264 Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGAD 327 GA + G + E YT D Sbjct: 265 LAGGADLRVIQTLLGHADIATTEIYTHVLD 294 >gi|261400435|ref|ZP_05986560.1| tyrosine recombinase XerD [Neisseria lactamica ATCC 23970] gi|313668771|ref|YP_004049055.1| integrase/recombinase [Neisseria lactamica ST-640] gi|269209883|gb|EEZ76338.1| tyrosine recombinase XerD [Neisseria lactamica ATCC 23970] gi|313006233|emb|CBN87695.1| putative integrase/recombinase [Neisseria lactamica 020-06] Length = 291 Score = 130 bits (326), Expect = 4e-28, Method: Composition-based stats. Identities = 42/263 (15%), Positives = 92/263 (34%), Gaps = 18/263 (6%) Query: 85 GSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRV 142 L+ N+ S+ ++I R+ + + V + SS + L++ + Sbjct: 17 RRLSRNTLDSYRRDLEKIARRLSLCGKTLADAEETDLAAAVYADGEQRSSQARALSACKR 76 Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK----SFWSEGSQPRLAFEF 198 L+ W + A NP ++ PK T++ + + + G + + E Sbjct: 77 LYAWMEWEGMRADNPTRLLKPPKTDRNIPPLITEQQVSRLLDAPDTETPHGLRDKALLEL 136 Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG----------FMKLLAM 247 + +GLR S++ ++ + I K V + + + + Sbjct: 137 MYATGLRVSEAVGLNFGNVDLDRGCITALGKGDKQRMVPMGQESAYWVGRYYTEARPVLL 196 Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHE 306 + F++ K ++ + K A++AG+ S H +R AT G Sbjct: 197 KGRSCDALFVSQKKTGISRQLAWMIVKEYASQAGIGHISPHSLRHAFATHLVQHGLDLRV 256 Query: 307 LMATYGWKTVDQAETYTKGADRI 329 + G ++ + YT A+ Sbjct: 257 VQDMLGHADLNTTQIYTHIANVR 279 >gi|312793576|ref|YP_004026499.1| integrase family protein [Caldicellulosiruptor kristjanssonii 177R1B] gi|312180716|gb|ADQ40886.1| integrase family protein [Caldicellulosiruptor kristjanssonii 177R1B] Length = 327 Score = 130 bits (326), Expect = 4e-28, Method: Composition-based stats. Identities = 52/284 (18%), Positives = 105/284 (36%), Gaps = 22/284 (7%) Query: 66 KKPTTLKWL---ISEYRKSAHWGSLAVNSRISFESYFDQI-IRKSGDFDYRKITTKHIRS 121 K P T+K + + + L + S+I + I + + +T ++ Sbjct: 23 KSPNTIKEYYYDLRTFLRYLKAKDLNILSQIEKIEDLENIDVSNFEIEKLKTLTLSNLYE 82 Query: 122 GVE----SRKHTPSSAIQFLTSMRVLFKWAV-RQEYVAINPCLSVERPKRKTEGIRPWTK 176 + P + + + S+R FK+ + + + NP +E PK R T Sbjct: 83 YFSFLATRFNNGPYARARKVASIRSFFKYLYSKAKLIPDNPAKDLESPKLGKRNPRYLTL 142 Query: 177 EDMQQFKSFWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT 234 ++ ++ S ++ R L GLR S+ + +++++ I + I Sbjct: 143 DESKKLLSSIDGENKERDFAIITLFLNCGLRLSELVNINLSDIKDDMLRIVGKGNKERII 202 Query: 235 V---ELPDGFMKLLAMTPI----GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--- 284 D L + P K+ F++ K++++ + AG+N+ Sbjct: 203 YLNKACKDAIENYLKVRPTEGVKDKDALFLSERKKRISRRTVQYIVEKYVKMAGINQKKI 262 Query: 285 SAHGVRKFSATISADAGA-TAHELMATYGWKTVDQAETYTKGAD 327 SAH +R +AT+ G L G +++ E YT D Sbjct: 263 SAHKLRHTAATLMYRHGKVDIRSLQTILGHQSISTTEIYTHVND 306 >gi|146296950|ref|YP_001180721.1| site-specific tyrosine recombinase XerC [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145410526|gb|ABP67530.1| phage integrase family protein [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 328 Score = 130 bits (326), Expect = 4e-28, Method: Composition-based stats. Identities = 52/285 (18%), Positives = 106/285 (37%), Gaps = 24/285 (8%) Query: 66 KKPTTLKWL---ISEYRKSAHWGSLAVNSRISFESYFDQI-IRKSGDFDYRKITTKHIRS 121 K P T+K + + + L + S+I + I + + +T ++ Sbjct: 23 KSPNTIKEYYYDLRTFLRYLKAKDLNILSQIEKIEDLENIDVSNFEIERLKTLTLSNLYE 82 Query: 122 GVE----SRKHTPSSAIQFLTSMRVLFKWAV-RQEYVAINPCLSVERPKRKTEGIRPWTK 176 + P + + + S+R FK+ + + + NP +E PK R T Sbjct: 83 YFSFLATRFNNGPYARARKVASIRSFFKYLYSKAKLIPDNPAKDLESPKLGKRNPRYLTL 142 Query: 177 EDMQQFKSFWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT 234 ++ ++ S ++ R L GLR S+ + +++++ I K Sbjct: 143 DESKKLLSAIDGENKERDFAIITLFLNCGLRLSELVNINLSDIKDDMLRI-VGKGNKERI 201 Query: 235 VELPDGFMKL----LAMTPI----GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-- 284 + L + L + P K+ F++ K++++ + AG+N+ Sbjct: 202 IYLNKACKEAIENYLKVRPTEGVKDKDALFLSERKKRISRRTVQYIVEKYVKMAGINQKK 261 Query: 285 -SAHGVRKFSATISADAGA-TAHELMATYGWKTVDQAETYTKGAD 327 SAH +R +AT+ G L G +++ E YT D Sbjct: 262 ISAHKLRHTAATLMYRHGKVDIRSLQTILGHQSISTTEIYTHVND 306 >gi|312127184|ref|YP_003992058.1| tyrosine recombinase xerd [Caldicellulosiruptor hydrothermalis 108] gi|311777203|gb|ADQ06689.1| tyrosine recombinase XerD [Caldicellulosiruptor hydrothermalis 108] Length = 291 Score = 130 bits (326), Expect = 4e-28, Method: Composition-based stats. Identities = 43/278 (15%), Positives = 99/278 (35%), Gaps = 23/278 (8%) Query: 74 LISEYRKSAHWGSL-AVNSRISFESYFDQIIRKSGDFDYRKITTK-----HIRSGVESRK 127 +I + + + N+ S+ + I + + T ++ Sbjct: 3 IIEAFGNHLQRQNRFSQNTISSYLRDAKKYIEFLDNIKIKLENTSQATLIAYIISMQKSG 62 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + S+ + + S++V + + Q V I + +E PK + + T++++++ S Sbjct: 63 KSNSTIARAIVSLKVFYDFLKIQNIVDIG-KIEIEPPKLEKSPPQILTRDEVEKLLSCPK 121 Query: 188 E----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243 E G + + E L +G+R S+ + + I + + + + Sbjct: 122 EDDIKGIRDKAMLELLYATGIRVSELINLNLDDINLEHGYIICKNKKRDRVIPIGSYAIS 181 Query: 244 LLA----------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRK 291 + +E F+N + ++M F K A AG++K + H +R Sbjct: 182 AVEKYLRHSRPYLAKNKDEEALFLNFNGERMTRQGFWKIVKFYAQSAGIDKEITPHVLRH 241 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 AT + GA + G + + Y + A+ Sbjct: 242 SFATHLIENGADVRAVQQMLGHADISTTQRYLQVANVK 279 >gi|218961859|ref|YP_001741634.1| Tyrosine recombinase xerD [Candidatus Cloacamonas acidaminovorans] gi|167730516|emb|CAO81428.1| Tyrosine recombinase xerD [Candidatus Cloacamonas acidaminovorans] Length = 313 Score = 129 bits (325), Expect = 5e-28, Method: Composition-based stats. Identities = 56/305 (18%), Positives = 104/305 (34%), Gaps = 37/305 (12%) Query: 61 INSPRKKPTTLKWLISE--------YRKSAHWG-----SLAVNSRISFESYFDQII---- 103 +++ KKP T+ I E Y S + +A NS S+ + Sbjct: 1 MSTSLKKPRTITAGIEEELSPALKSYLSSFVYHLKVERGMAKNSIESYRRDIGDFLLFCP 60 Query: 104 RKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER 163 ++ G+++ IT ++ +S + ++ F + + V R Sbjct: 61 KEIGNYETDDITK--YLLSLQEIGLLNTSVARKRVALGQFFGFLKDNDIETKVDMDLVPR 118 Query: 164 PKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQ- 218 K + T E+M Q + + + +L E L +G+R S+ + L Sbjct: 119 IKLGVQLPDVLTVEEMFQLLNSLPVKTPLEIRNKLMMELLYATGMRISELLSISLHDLNL 178 Query: 219 NNIFSIKTQKTGTIITVELPDGFMKL----------LAMTPIGKETFFINNDKQKMNATQ 268 + K V D +L + + E F+NN ++M+ Sbjct: 179 TERVILVHGKGSKQRYVPYVDTLDELFAKYLKQSRPILLKLKQSELLFLNNRGERMSRMG 238 Query: 269 FSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 F + +A + K + H R AT + G + A G ++D + YT Sbjct: 239 FWKILRKAVLEANIKKEVTPHTFRHSFATHLLEGGVNLRIVQALLGHSSIDTTQIYTH-I 297 Query: 327 DRIRL 331 D RL Sbjct: 298 DMKRL 302 >gi|319937347|ref|ZP_08011754.1| site-specific tyrosine recombinase xerD [Coprobacillus sp. 29_1] gi|319807713|gb|EFW04306.1| site-specific tyrosine recombinase xerD [Coprobacillus sp. 29_1] Length = 301 Score = 129 bits (325), Expect = 5e-28, Method: Composition-based stats. Identities = 49/270 (18%), Positives = 97/270 (35%), Gaps = 21/270 (7%) Query: 89 VNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH--TPSSAIQFLTSMRVLFKW 146 N + + I +K + + H+ ++ + SS + +TS++ + + Sbjct: 26 ENYERDILHFINFIHKKYEVDNVNNVIKDHMYHYLKDLHNHLKASSVDRHMTSLKQFYIF 85 Query: 147 AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG----SQPRLAFEFLLYS 202 V++ + N S E K+ T ++ Q + G ++ R E L S Sbjct: 86 LVKENIIKDNIMSSFEMSKKAKYLPEVLTVGEVNQLLDSIAVGDPVSARNRCMVEVLYAS 145 Query: 203 GLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLA----------MTPIG 251 GLR S+ C +Q++ + +K K V + + LL + Sbjct: 146 GLRVSEMCFLTLQNVNIHKGFVKCIGKRNKERIVPMNENCCLLLKEYIEEYRPQLCEEVS 205 Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMA 309 + FIN Q + F + K+G+ K + H +R AT + A + Sbjct: 206 SQYLFINKRGQPIQRDDFYHILENIVKKSGLKKHVTPHTLRHTFATHLLENDADLRSIQE 265 Query: 310 TYGWKTVDQAETYTKGADRIRLGIKNSRRI 339 G + YT ++ I+ R++ Sbjct: 266 MLGHSDISTTTIYTHVSNNK--AIEEYRKL 293 >gi|260771883|ref|ZP_05880801.1| site-specific recombinase XerD [Vibrio metschnikovii CIP 69.14] gi|260613175|gb|EEX38376.1| site-specific recombinase XerD [Vibrio metschnikovii CIP 69.14] Length = 302 Score = 129 bits (325), Expect = 5e-28, Method: Composition-based stats. Identities = 48/278 (17%), Positives = 104/278 (37%), Gaps = 26/278 (9%) Query: 74 LISEYRKSAHW--GSLAVNSRISFESYFDQIIRKSGDFDYRKITTK-----HIRSGVESR 126 L+ ++ A W LA N+ +S+ + +++ DYR +S + + Sbjct: 11 LVEQFL-DAMWMERGLAENTLMSYRNDLTKLLLWMEQHDYRLDFISLAGLLEYQSWLTDQ 69 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF- 185 + +S + L+++R LF++ R++ + +P + PK + ++E ++ + Sbjct: 70 DYKQTSRARMLSALRRLFQYLHREKVRSDDPSALLVSPKLPQRLPKDLSEEQVEALLNAP 129 Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGF 241 + + E L +GLR ++ ++++ K G V + + Sbjct: 130 DPNDPLELRDKAMLELLYATGLRVTELISLTMENISLRQGVVRVVGKGGKERLVPMGENA 189 Query: 242 MKLLAMTPIGK----------ETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHG 288 ++ + + F + Q+M F K A AG++ S H Sbjct: 190 IEWIETFIAQGRLHLLGDNTSDVVFPSKRAQQMTRQTFWHRIKYYAVIAGIDVEKLSPHV 249 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 +R AT + GA + G + + YT A Sbjct: 250 LRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVA 287 >gi|261881024|ref|ZP_06007451.1| conserved hypothetical protein [Prevotella bergensis DSM 17361] gi|270332233|gb|EFA43019.1| conserved hypothetical protein [Prevotella bergensis DSM 17361] Length = 407 Score = 129 bits (325), Expect = 5e-28, Method: Composition-based stats. Identities = 47/227 (20%), Positives = 87/227 (38%), Gaps = 19/227 (8%) Query: 117 KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR--PW 174 +H ++SR A + + ++A+ E + +PC V K + +R Sbjct: 175 EHFVEYLQSRSVG-EGAKSIYQRFKKVVRYAIDHEVMLKDPCKGV-VCKVDEQILRKDVL 232 Query: 175 TKEDMQQFKSFWSEGSQP--RLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTG 230 + +++Q + P R AF LY GLR D +++ N + + KT Sbjct: 233 SMDEIQSLIQCHYDNENPNVRRAFILCLYCGLRFCDVKDLTYKNIDYTNRLLKFEQNKTK 292 Query: 231 -----TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284 + + + L DG + L+ P ++ N + K +AG+NK Sbjct: 293 GHSANSGVVIPLNDGLLSLIGEAPDDLDSSIFNLP----SYESCCKSVKRWVKRAGINKH 348 Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 S H R A + GA + + G + E YT+ D+++ Sbjct: 349 ISWHCARHSFAVNILNNGANIKTVSSLLGHSGLKHTEKYTRAVDKLK 395 >gi|312135197|ref|YP_004002535.1| integrase family protein [Caldicellulosiruptor owensensis OL] gi|311775248|gb|ADQ04735.1| integrase family protein [Caldicellulosiruptor owensensis OL] Length = 328 Score = 129 bits (325), Expect = 5e-28, Method: Composition-based stats. Identities = 44/218 (20%), Positives = 85/218 (38%), Gaps = 16/218 (7%) Query: 125 SRKHTPSSAIQFLTSMRVLFKWAV-RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 + P + + + S+R FK+ + + + NP +E PK R T E+ ++ Sbjct: 90 RFNNGPYARARKVASIRSFFKYLYSKAKLIPDNPAKDLESPKLGKRNPRYLTLEESKKLL 149 Query: 184 SFWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241 S ++ R L GLR S+ + +++++ I K + L Sbjct: 150 SAIDGENKERDFAMITLFLNCGLRLSELVNINLSDIKDDMLRI-VGKGNKERIIYLNKAC 208 Query: 242 MKL----LAMTPI----GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVR 290 + L + P K+ F++ K++++ + AG+N+ SAH +R Sbjct: 209 KEAIENYLKVRPTEGVKDKDALFLSERKKRISRRTVQYIVEKYVKMAGINQKKISAHKLR 268 Query: 291 KFSATISADAGA-TAHELMATYGWKTVDQAETYTKGAD 327 +AT+ G L G +++ E YT D Sbjct: 269 HTAATLMYRHGKVDIRSLQTILGHQSISTTEIYTHVND 306 >gi|312127552|ref|YP_003992426.1| integrase family protein [Caldicellulosiruptor hydrothermalis 108] gi|311777571|gb|ADQ07057.1| integrase family protein [Caldicellulosiruptor hydrothermalis 108] Length = 328 Score = 129 bits (325), Expect = 5e-28, Method: Composition-based stats. Identities = 52/285 (18%), Positives = 106/285 (37%), Gaps = 24/285 (8%) Query: 66 KKPTTLKWL---ISEYRKSAHWGSLAVNSRISFESYFDQI-IRKSGDFDYRKITTKHIRS 121 K P T+K + + + L + S+I + I + + +T ++ Sbjct: 23 KSPNTIKEYYYDLRTFLRYLKAKDLNMLSQIEKIEDLENIDVSNFEIEKLKALTLSNLYE 82 Query: 122 GVE----SRKHTPSSAIQFLTSMRVLFKWAV-RQEYVAINPCLSVERPKRKTEGIRPWTK 176 + P + + + S+R FK+ + + + NP +E PK R T Sbjct: 83 YFSFLATRFNNGPYARARKVASIRSFFKYLYSKAKLIPDNPAKDLESPKLGKRNPRYLTL 142 Query: 177 EDMQQFKSFWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT 234 ++ ++ S ++ R L GLR S+ + +++++ I K Sbjct: 143 DESKKLLSAIDGENKERDFAIITLFLNCGLRLSELVNINLSDIKDDMLRI-VGKGNKERI 201 Query: 235 VELPDGFMKL----LAMTPI----GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-- 284 + L + L + P K+ F++ K++++ + AG+N+ Sbjct: 202 IYLNKACKEAIENYLKVRPTEGVKDKDALFLSERKKRISRRTVQYIVEKYVKMAGINQKK 261 Query: 285 -SAHGVRKFSATISADAGA-TAHELMATYGWKTVDQAETYTKGAD 327 SAH +R +AT+ G L G +++ E YT D Sbjct: 262 ISAHKLRHTAATLMYRHGKVDIRSLQTILGHQSISTTEIYTHVND 306 >gi|172040772|ref|YP_001800486.1| integrase/recombinase [Corynebacterium urealyticum DSM 7109] gi|171852076|emb|CAQ05052.1| integrase/recombinase [Corynebacterium urealyticum DSM 7109] Length = 303 Score = 129 bits (325), Expect = 5e-28, Method: Composition-based stats. Identities = 48/262 (18%), Positives = 84/262 (32%), Gaps = 22/262 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT----PSSAIQFLTSM 140 +L+ N+ S+ D+ + G ++ T I S + S S+ + L ++ Sbjct: 24 RNLSRNTLDSYRRDTDRYLAWLGARSVTELNTGDIESFMASLAKGEGLAASTRARILAAV 83 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS-------QPR 193 R ++ + + V RP + + + ++ + R Sbjct: 84 RNFHRFLTGEGVTEGDVADDVARPGQAASIPKALSIAEVTAILESCPNDDAASLIQIRDR 143 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLL------- 245 E L +G R S+ V + I K V + D + L Sbjct: 144 ALLEMLYSTGARVSELLGLDVDDVDPTEKLIIVRGKGSKERVVPVGDPALDALQHYLVRV 203 Query: 246 --AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGA 302 A G F+N + +M + + KAGV S H R AT + GA Sbjct: 204 RPAFNKKGSAALFLNRNGGRMGRQSAFNMVSSVSEKAGVAGVSPHSFRHSFATHLLEGGA 263 Query: 303 TAHELMATYGWKTVDQAETYTK 324 + G V + YTK Sbjct: 264 DIRVVQELLGHSNVVTTQIYTK 285 >gi|284033002|ref|YP_003382933.1| tyrosine recombinase XerD [Kribbella flavida DSM 17836] gi|283812295|gb|ADB34134.1| tyrosine recombinase XerD [Kribbella flavida DSM 17836] Length = 313 Score = 129 bits (325), Expect = 5e-28, Method: Composition-based stats. Identities = 48/287 (16%), Positives = 100/287 (34%), Gaps = 34/287 (11%) Query: 71 LKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR 126 + +S Y LA N+ S+ + G ++T + + Sbjct: 4 IGRAVSAYLDHLTVERGLAANTLASYRRDLRRYDEYLAGAGISALGRVTEAVVGDFLMRL 63 Query: 127 KH--------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 + T SSA + + ++R K+ +R+ I+P +V+ P + + ++ Sbjct: 64 REGDEHHPPLTASSAGRTVVAVRGFHKFCLREGLTVIDPAAAVKPPVPPQRLPKALSVDE 123 Query: 179 MQQFKSFWS--------EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230 + + + + ++ EFL +G R S++ V + + + G Sbjct: 124 VTRILAAAAGADAEPAVLATRDAALLEFLYGTGARISEAVGLDVDDVDLESGQVLLRGKG 183 Query: 231 T-IITVELPDGFMKLLAM-----------TPIGKETFFINNDKQKMNATQFSIWFKAKAT 278 + V + + L+ G F+N +++ + A Sbjct: 184 SKERVVPVGSYAREALSAYQVRGRPDLVARGRGTHALFLNARGGRLSRQSAWTVLRRAAQ 243 Query: 279 KAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 +AG++K S H +R AT D GA + G +V + YT Sbjct: 244 RAGISKEISPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQVYT 290 >gi|285019429|ref|YP_003377140.1| tyrosine recombinase [Xanthomonas albilineans GPE PC73] gi|283474647|emb|CBA17146.1| probable tyrosine recombinase protein [Xanthomonas albilineans] Length = 324 Score = 129 bits (325), Expect = 6e-28, Method: Composition-based stats. Identities = 53/283 (18%), Positives = 96/283 (33%), Gaps = 32/283 (11%) Query: 72 KWLISEYRKSAHW--GSLAVNSRISFESYFD---QIIRKSGDFDYRKITTK--HIRSGVE 124 I ++ A W LA S S+ + + GD + + Sbjct: 25 AAAIQQFL-DAAWTEQGLARQSLDSYRRDLEGFARWRDGVGDGLVGADRQALFNYLAWRT 83 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 +T S ++L+S+R F +R+ +P +E P+ + + + + Sbjct: 84 ELGYTQRSNARWLSSLRAFFALRLRRGQRGDDPTALLEPPRLPRSLPKALAESQIDALLA 143 Query: 185 F----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPD 239 G + R E + +GLR S+ + + ++ T K V L + Sbjct: 144 APDTTAPLGLRDRAMLELMYAAGLRVSELVQLPANAVNLRQGVLRVTGKGSKERLVPLGE 203 Query: 240 GFMKLLAM----------------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283 L G FI+ ++ ++ QF + K AT AG++ Sbjct: 204 ESQHWLQCYLDTARSVLVAGQAVPARDGAVPLFIDAARRPLSRQQFWVLIKRYATLAGID 263 Query: 284 ---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 S HG+R AT + GA L G ++ + YT Sbjct: 264 PMRISPHGLRHSFATHLLNRGADLRALQMLLGHSSLSTTQIYT 306 >gi|78186473|ref|YP_374516.1| tyrosine recombinase XerD [Chlorobium luteolum DSM 273] gi|78166375|gb|ABB23473.1| Tyrosine recombinase XerD [Chlorobium luteolum DSM 273] Length = 306 Score = 129 bits (325), Expect = 6e-28, Method: Composition-based stats. Identities = 50/265 (18%), Positives = 94/265 (35%), Gaps = 25/265 (9%) Query: 85 GSLAVNSRISFESYFDQ--IIRKSGDFDYRKITTK---HIRSGVESRKHTPSSAIQFLTS 139 + A N+R S+ + + + + D IT + H + PSS + +++ Sbjct: 25 RNFAGNTRESYRNDLGRYLLAMQEDDVPLEAITAERINHFVLALHQAGLEPSSIARNVSA 84 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEG---SQP 192 +R L ++ + +A NP ++ +PK+ T ++ ++ G + Sbjct: 85 IRSLHRFLFNEHRLASNPAETLHQPKQARYLPAVLTLQETERVLEAPMLQSPPGRFLLRD 144 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLLAM---- 247 R E L SG+R ++ Q+L + F K V + D + Sbjct: 145 RAILELLYASGIRVTELVDMTQQNLYLDERFIRIFGKGSKERLVPIGDAAAAWIRRYREE 204 Query: 248 ------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299 + F+N +K+ K A AG+ K S H R AT + Sbjct: 205 LRMKLSNRNSLDHLFLNARGRKLTRMAVYNMVKEYARLAGIEKNISPHTFRHTFATHLLE 264 Query: 300 AGATAHELMATYGWKTVDQAETYTK 324 GA + G ++ + YT Sbjct: 265 GGADLRAVQEMLGHSSIVATQIYTH 289 >gi|320535370|ref|ZP_08035484.1| putative site-specific tyrosine recombinase XerD [Treponema phagedenis F0421] gi|320147772|gb|EFW39274.1| putative site-specific tyrosine recombinase XerD [Treponema phagedenis F0421] Length = 255 Score = 129 bits (325), Expect = 6e-28, Method: Composition-based stats. Identities = 34/228 (14%), Positives = 74/228 (32%), Gaps = 21/228 (9%) Query: 118 HIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177 H + + + ++ +++ + + NP ++E P+R+ R + E Sbjct: 2 HFIISRSEAGIMGKTTAKDIAALNSFYRFLILENVRQDNPAENIEAPRREKNLPRVLSPE 61 Query: 178 DMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTI 232 ++ G + R FE + +GLR S+ ++ + + T K Sbjct: 62 EVDLLLDSIPLNSPNGIRDRALFELIYSAGLRVSEVVGLSLEDIFFDEQLLKVTGKGSKE 121 Query: 233 ITVELPDGFMKLLAMTPIG----------------KETFFINNDKQKMNATQFSIWFKAK 276 V + L G + F+N + ++++ + Sbjct: 122 RIVPFGKQAKQQLQNYIDGARKAFIKPQYTENTETRGAVFLNKNGKRLSRKGIWKRLQEI 181 Query: 277 ATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 +G+N H +R AT GA + G + + YT Sbjct: 182 EVISGINTKVHTLRHSYATHLLAGGADLRSVQCLLGHADISTTQIYTH 229 >gi|227495065|ref|ZP_03925381.1| possible integrase/recombinase [Actinomyces coleocanis DSM 15436] gi|226831517|gb|EEH63900.1| possible integrase/recombinase [Actinomyces coleocanis DSM 15436] Length = 302 Score = 129 bits (325), Expect = 6e-28, Method: Composition-based stats. Identities = 46/276 (16%), Positives = 99/276 (35%), Gaps = 27/276 (9%) Query: 83 HWGSLAVNSRISFESYFDQIIRK-SGDFDYRKIT-----TKHIRSGVESRKHTPSSAIQF 136 H+ + +++ ++E+ + G+ + I + S + H +S ++ Sbjct: 18 HFRGFSTHTQRAYENDVKAALEYCFGNDPFTPIDFNSQALRSFLSNRIRKGHARASVARY 77 Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ----- 191 S+R+ WA++Q ++ +P L ++ K + + E + Q + E +Q Sbjct: 78 AASLRLFSSWALKQGHLNSDPSLKLKTAKVDNHLPQVLSLEQINQLFNHLVETAQTGNVN 137 Query: 192 -PRLAF--EFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAM 247 R E L G+R ++ + + + +++ K V ++ L Sbjct: 138 AIRDWATSELLYSCGIRVAELVGLNLTSVDGSNRTLRVIGKGNKERLVPFGTPALESLRA 197 Query: 248 TPIGKETFFINND-KQKMNATQFSIWF---------KAKATKAGVN-KSAHGVRKFSATI 296 +N Q + + +AGV S HG+R +AT Sbjct: 198 WVTQGRPQLVNERSGQALFLGSRGGRIDQRIVRECLEKACVQAGVPVLSPHGLRHCAATH 257 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 + GA + G ++ + YT D +RL Sbjct: 258 MLEGGADLRTVQDMLGHASLATTQRYTH-VDAVRLS 292 >gi|71901322|ref|ZP_00683418.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella fastidiosa Ann-1] gi|71728906|gb|EAO31041.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella fastidiosa Ann-1] Length = 339 Score = 129 bits (325), Expect = 6e-28, Method: Composition-based stats. Identities = 63/333 (18%), Positives = 112/333 (33%), Gaps = 28/333 (8%) Query: 7 LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66 +P F + + + G + YY+ G R P Y A+ + E+ Sbjct: 11 IPRFRVRPQ-KSGVVYYYYDHGGKPRKETPLG------RDYGLAI-KRWAELEHAQITPA 62 Query: 67 KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVE 124 T + + YR + A +++ Y + +++ D + I IR ++ Sbjct: 63 IAVTFRHVAERYRAEVI-PTKARSTQQMHHIYLNYLLQFFDDPPAPFEAIRPVDIRKYLD 121 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVA-INPCLSVERPKRKTEGIRPWTKEDMQQFK 183 R SA + ++ L WA + NPC + R K + D ++ Sbjct: 122 WRPFKV-SANREISVFSHLCNWARSKGITDLANPCAGIRRNKESGRDVYI----DDATYR 176 Query: 184 SFWSEGSQP-RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242 + + Q R A + +G R SD +H+ N I KTG + + + Sbjct: 177 AVYQAADQTLRDAMDLAYLTGQRVSDVLSMDERHIVNGALEICQAKTGAKLAIAITGELA 236 Query: 243 KLLAMTPIGKE-------TFFINNDKQKMNATQFSIWFKAKATKAGVNKSA---HGVRKF 292 L+ K ++ + FK AG+ K A +R Sbjct: 237 VLIKRIFDHKRGLKLRSTRLIVDEKGFGLGCMALRYRFKKARAAAGIAKQAFQFRDLRAK 296 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKG 325 +AT AD + A G +V E Y + Sbjct: 297 AATDKADLAGDIRQAQAQLGHTSVVMTEHYVRK 329 >gi|320201208|gb|EFW75790.1| Phage integrase [Escherichia coli EC4100B] Length = 356 Score = 129 bits (325), Expect = 6e-28, Method: Composition-based stats. Identities = 62/343 (18%), Positives = 115/343 (33%), Gaps = 25/343 (7%) Query: 7 LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHE---STFIPAYMSALTGSTPKREYINS 63 LPP + R+ Y G+ L + I A + +G K Sbjct: 12 LPPNLY---IRNNGYYCYRDPRTGKEFGLGRDRRIAITEAIQANIELFSGHKHKPLTARI 68 Query: 64 PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123 TL + Y K + + I++ S I R D ITTK I + + Sbjct: 69 NSDNSVTLHSWLDRYEKILASRGIKQKTLINYMSKIKAIRRGLPDAPLEDITTKEIAAML 128 Query: 124 ESRKH--TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 +SA +++ F+ A+ + ++ NP + K + R E ++ Sbjct: 129 NGYIDEGKAASAKLIRSTLSDAFREAIAEGHITTNPVAATRAAKSEVRRSRLTADEYLKI 188 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE----- 236 +++ S RLA E + +G R D C + + ++ KTG I + Sbjct: 189 YQAAESSPCWLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAIPTVLHV 248 Query: 237 ----LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-----NKSAH 287 + +G ET + ++ +++ S +F +G+ + H Sbjct: 249 DALGISMKETLDKCKEILGGETIIASTRREPLSSGTVSRYFMRARKASGLSFEGDPPTFH 308 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 +R + + + G K+ A Y DR R Sbjct: 309 ELR-SLSARLYEKQISDKFAQHLLGHKSDTMASQY--RDDRGR 348 >gi|150390286|ref|YP_001320335.1| tyrosine recombinase XerD [Alkaliphilus metalliredigens QYMF] gi|149950148|gb|ABR48676.1| tyrosine recombinase XerD [Alkaliphilus metalliredigens QYMF] Length = 294 Score = 129 bits (325), Expect = 6e-28, Method: Composition-based stats. Identities = 41/262 (15%), Positives = 91/262 (34%), Gaps = 22/262 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS------GVESRKHTPSSAIQFLT 138 L+ N+ S++ Q D I + ++ S+ + L Sbjct: 16 KHLSTNTLESYKRDVKQFTSYLAGSDIHDIEETTKTTIITYLFYLQKEGRAASTISRSLA 75 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI----RPWTKEDMQQFKSFWSEGSQPRL 194 S+R + + + + V I+P ++E PK + + +QQ + +G + + Sbjct: 76 SLRSFYHYLLLHKKVDIDPTFNLESPKMVKKPPNILTLEEVELLLQQPLNTTPKGIRDKA 135 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL----PDGFMKLLA---- 246 E L +G+R ++ ++ + N+ I+ + + K + Sbjct: 136 MLELLYATGIRVTELISLNLEDVNVNLGYIRCCNNTKERVIPIGTLSLIALQKYINYYRD 195 Query: 247 --MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGA 302 +++ F+N ++ F K +A + KS H +R AT + GA Sbjct: 196 AFTKDNEEKSLFLNYHGGRLTRQGFWKIIKVYTKQAAIEKSITPHTLRHSFATHLIENGA 255 Query: 303 TAHELMATYGWKTVDQAETYTK 324 + G + + Y + Sbjct: 256 DLKSVQEMLGHSDISTTQVYAQ 277 >gi|326335596|ref|ZP_08201783.1| integrase/recombinase XerD [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325692362|gb|EGD34314.1| integrase/recombinase XerD [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 297 Score = 129 bits (325), Expect = 6e-28, Method: Composition-based stats. Identities = 42/266 (15%), Positives = 93/266 (34%), Gaps = 28/266 (10%) Query: 85 GSLAVNSRISFESYFDQIIR-----KSGDFDYRKITTKHIRSGVES--RKHTPSSAIQFL 137 ++ NS S+ +++ + + I+ + +R + ++ S + + Sbjct: 17 RGMSENSVHSYLFDMEKLREFVAIHQIEETPV-NISAETLRMFIYEVGKELHARSQSRLI 75 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPR 193 ++++ FK+ + + Y P +++ PK + + E++ + EG + R Sbjct: 76 SALKSFFKFLLLENYREDFPMETIDTPKFGMKLPDTLSLEEIDAIIAGIDLSTEEGHRNR 135 Query: 194 LAFEFLLYSGLRCSDSCRAGVQH--LQNNIFSIKTQKTGTIITVELPDGFMK-------- 243 E L GLR S+ + + K V + + K Sbjct: 136 AIIETLYGCGLRVSELVNLHLSDLFFSEGFIRV-LGKGNKQRLVPISEYTQKEINNYILH 194 Query: 244 ---LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISA 298 + + + F+N +++ K A+ G+ K S H R AT Sbjct: 195 QRKNIPIVKEFSDIVFLNRRGKQLTRAMIFTIIKQAASAIGLTKTISPHTFRHSFATHLL 254 Query: 299 DAGATAHELMATYGWKTVDQAETYTK 324 + GA + G +++ E YT Sbjct: 255 ENGANLRAIQLMLGHESIITTEIYTH 280 >gi|218704094|ref|YP_002411613.1| Integrase from phage [Escherichia coli UMN026] gi|218431191|emb|CAR12067.1| Integrase from phage [Escherichia coli UMN026] gi|323976899|gb|EGB71987.1| bacteriophage lambda integrase domain-containing protein [Escherichia coli TW10509] Length = 356 Score = 129 bits (324), Expect = 6e-28, Method: Composition-based stats. Identities = 62/343 (18%), Positives = 115/343 (33%), Gaps = 25/343 (7%) Query: 7 LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHE---STFIPAYMSALTGSTPKREYINS 63 LPP + R+ Y G+ L + I A + +G K Sbjct: 12 LPPNLY---IRNNGYYCYRDPRTGKEFGLGRDRRIAITEAIQANIELFSGHKHKPLTARI 68 Query: 64 PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123 TL + Y K + + I++ S I R D ITTK I + + Sbjct: 69 NSDNSVTLHSWLDRYEKILASRGIKQKTLINYMSKIKAIRRGLPDVPLEDITTKEIAAML 128 Query: 124 ESRKH--TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 +SA +++ F+ A+ + ++ NP + K + R E ++ Sbjct: 129 NGYIDEGKAASAKLIRSTLSDAFREAIAEGHITTNPVAATRAAKSEVRRSRLTADEYLKI 188 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE----- 236 +++ S RLA E + +G R D C + + ++ KTG I + Sbjct: 189 YQAAESSPCWLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAIPTALHV 248 Query: 237 ----LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-----NKSAH 287 + +G ET + ++ +++ S +F +G+ + H Sbjct: 249 DALGISMKETLDKCKEILGGETIIASTRREPLSSGTVSRYFMRARKASGLSFEGDPPTFH 308 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 +R + + + G K+ A Y DR R Sbjct: 309 ELR-SLSARLYEKQISDKFAQHLLGHKSDTMASQY--RDDRGR 348 >gi|323187771|gb|EFZ73069.1| integrase [Escherichia coli RN587/1] Length = 317 Score = 129 bits (324), Expect = 6e-28, Method: Composition-based stats. Identities = 51/294 (17%), Positives = 98/294 (33%), Gaps = 17/294 (5%) Query: 51 LTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD 110 TGS + TL + Y + + + + S I RK D Sbjct: 16 YTGSRRESLIDRIKGADAITLHAWLDRYETILRERGIRPKTLLDYASKIRAIRRKLPDKP 75 Query: 111 YRKITTKHIRSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168 I+TK + + + + + +SA +++ +F+ A+ + +VA NP + K + Sbjct: 76 LADISTKEVAAMLNTYVAEGKAASAKLIRSTLVDVFREAIAEGHVATNPVTATRTAKPEV 135 Query: 169 EGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228 R E + + RLA + + +G R D C+ + +N I+ K Sbjct: 136 RRSRLTANEYVAIHHAAEPLPIWLRLAMDLAVVTGQRVGDLCKMKWSDINDNHLHIEQGK 195 Query: 229 TGTIITVELP-------DGFMKLL--AMTPIGKETFFINNDKQKMNATQFSIWFKAKATK 279 TG + + L +L G +T + + ++ S +F Sbjct: 196 TGAKLAIPLTLTIDALNISLADILQKCREASGSDTIIASTHHEPLSPKTVSKYFTKARNA 255 Query: 280 AGV-----NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 +G+ + H +R + G K+ A Y R Sbjct: 256 SGLSFDGDPPTFHELR-SLSARLYRNQIGDKFAQRLLGHKSDSMAARYRDSRGR 308 >gi|15676649|ref|NP_273793.1| integrase/recombinase XerD [Neisseria meningitidis MC58] gi|34223072|sp|Q9K068|XERD_NEIMB RecName: Full=Tyrosine recombinase xerD gi|7225980|gb|AAF41164.1| integrase/recombinase XerD [Neisseria meningitidis MC58] gi|325133733|gb|EGC56389.1| tyrosine recombinase XerD [Neisseria meningitidis M13399] gi|325140092|gb|EGC62621.1| tyrosine recombinase XerD [Neisseria meningitidis CU385] Length = 291 Score = 129 bits (324), Expect = 6e-28, Method: Composition-based stats. Identities = 46/280 (16%), Positives = 98/280 (35%), Gaps = 21/280 (7%) Query: 74 LISEYRKSAHWGS--LAVNSRISFESYFDQIIRKSGDFD--YRKITTKHIRSGVESRKHT 129 LI ++ W L+ N+ + ++I R+ + + + V Sbjct: 5 LIDRLLETL-WLDRRLSQNTLNGYRRDLEKIARRLSQSGRMLKDADEADLAAAVYVDGEQ 63 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---- 185 SS + L++ + L+ W R+ NP ++ PK T++ + + + Sbjct: 64 RSSQARALSACKRLYIWMEREGIRTDNPTRLLKPPKIDKNIPTLITEQQISRLLAAPDTD 123 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG---- 240 G + + E + +GLR S++ ++ + I K V + Sbjct: 124 TPHGLRDKALLELMYATGLRVSEAVGLNFGNVDLDRGCITALGKGDKQRMVPMGQESAYW 183 Query: 241 ------FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFS 293 + L + + F++ K ++ + K A++AG+ S H +R Sbjct: 184 VERYYTEARPLLLKGRNCDALFVSQKKTGISRQLAWMIVKEYASQAGIGHISPHSLRHAF 243 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 AT G + G ++ + YT A+ G+ Sbjct: 244 ATHLVRHGLDLRVVQDMLGHADLNTTQIYTHVANVWLQGV 283 >gi|283769465|ref|ZP_06342361.1| phage integrase, N-terminal SAM domain protein [Bulleidia extructa W1219] gi|283103733|gb|EFC05119.1| phage integrase, N-terminal SAM domain protein [Bulleidia extructa W1219] Length = 297 Score = 129 bits (324), Expect = 6e-28, Method: Composition-based stats. Identities = 52/265 (19%), Positives = 97/265 (36%), Gaps = 20/265 (7%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE--SRKHTPSSAIQFLTSMRV 142 + + S+E+ Q + + ++ + S++ T S+ + Sbjct: 18 QGKSPRTVRSYENDLKQYLAYLKEKHILDSQKVTLQVVQDFLSQQSTIKSSNSVVHMATS 77 Query: 143 LFKWAVRQEY--VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRLAF 196 + + E+ NP ++ K +T + E+++Q + + + R Sbjct: 78 IRNFHEDIEFSTGEENPVSLIQVRKNETYLPSFLSVEEVKQLLNSFTRDDPKQELNRTIL 137 Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLA-----MTPI 250 E + GLR S+ C V +Q ++ K V +P+ +K L + PI Sbjct: 138 ELIYACGLRISELCSLTVAQVQLETGILRILGKGNKERIVPIPNQVVKDLDYYLNLIRPI 197 Query: 251 ----GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATA 304 TFFIN+ ++ A + K KA + G K + H +R AT AGA Sbjct: 198 WNQHKTNTFFINHLGNRITARSIQLLLKQKAMECGFQKDITPHSLRHTYATHLLQAGADL 257 Query: 305 HELMATYGWKTVDQAETYTKGADRI 329 + G + E YT +R Sbjct: 258 RIIQELLGHSNIKTTEIYTHVQNRQ 282 >gi|218553295|ref|YP_002386208.1| Integrase from phage [Escherichia coli IAI1] gi|218360063|emb|CAQ97610.1| Integrase from phage [Escherichia coli IAI1] Length = 356 Score = 129 bits (324), Expect = 6e-28, Method: Composition-based stats. Identities = 62/343 (18%), Positives = 115/343 (33%), Gaps = 25/343 (7%) Query: 7 LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHE---STFIPAYMSALTGSTPKREYINS 63 LPP + R+ Y G+ L + I A + +G K Sbjct: 12 LPPNLY---IRNNGYYCYRDPRTGKEFGLGRDRRIAITEAIQANIELFSGHKHKPLTARI 68 Query: 64 PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123 TL + Y K + + I++ S I R D ITTK I + + Sbjct: 69 NSDNSVTLHSWLDRYEKILASRGIKQKTLINYMSKIKAIRRGLPDAPLEDITTKEIAAML 128 Query: 124 ESRKH--TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 +SA +++ F+ A+ + ++ NP + K + R E ++ Sbjct: 129 NGYIDEGKAASAKLIRSTLSDAFREAIAEGHITTNPVAATRAAKSEVRRSRLTADEYLKI 188 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE----- 236 +++ S RLA E + +G R D C + + ++ KTG I + Sbjct: 189 YQAAESLPCWLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAIPTALHV 248 Query: 237 ----LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-----NKSAH 287 + +G ET + ++ +++ S +F +G+ + H Sbjct: 249 DALGISMKETLDKCKEILGGETIIASTRREPLSSGTVSRYFMRARKASGLSFEGDPPTFH 308 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 +R + + + G K+ A Y DR R Sbjct: 309 ELR-SLSARLYEKQISDKFAQHLLGHKSDTMASQY--RDDRGR 348 >gi|238022334|ref|ZP_04602760.1| hypothetical protein GCWU000324_02241 [Kingella oralis ATCC 51147] gi|237866948|gb|EEP67990.1| hypothetical protein GCWU000324_02241 [Kingella oralis ATCC 51147] Length = 300 Score = 129 bits (324), Expect = 6e-28, Method: Composition-based stats. Identities = 41/262 (15%), Positives = 89/262 (33%), Gaps = 18/262 (6%) Query: 86 SLAVNSRISFESYFDQI--IRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVL 143 L+ N+ ++ +I + + + + + + P S + L++ + L Sbjct: 25 RLSQNTLDAYRRDLTKIATRLANEHSSLKTTDAVQLAAAIYVAQEQPRSQARALSACKRL 84 Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----QQFKSFWSEGSQPRLAFEFL 199 + W + NPC + K+ T++ + + G + + E + Sbjct: 85 YAWLEETGQRSDNPCRDLRTAKQARTLPPIITEQHITDLLNAPDTETPHGLRDKALLELI 144 Query: 200 LYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLL-----AMTPI--- 250 +GLR S++ + + + T K V + + + L P Sbjct: 145 YATGLRVSEAVGLQLNEINLQSGMVNTIGKGDKQRIVPMGEEAVYWLEHYLQHARPALLK 204 Query: 251 --GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHEL 307 E F++ K ++ + A +AG+ S H +R AT + GA + Sbjct: 205 NARCEAVFVSQKKTGISRQLAWMAVSRYAEQAGMPHISPHDLRHAFATHLVNHGADLRVV 264 Query: 308 MATYGWKTVDQAETYTKGADRI 329 G + + YT A+ Sbjct: 265 QTLLGHADIATTQIYTHVANER 286 >gi|313906097|ref|ZP_07839448.1| integrase family protein [Eubacterium cellulosolvens 6] gi|313469086|gb|EFR64437.1| integrase family protein [Eubacterium cellulosolvens 6] Length = 281 Score = 129 bits (324), Expect = 6e-28, Method: Composition-based stats. Identities = 38/260 (14%), Positives = 91/260 (35%), Gaps = 22/260 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTK------HIRSGVESRKHTPSSAIQFLT 138 + N+ IS++ + + +E K + ++ + + Sbjct: 17 KKTSYNTEISYKRDLKNAAAYLEEQRVSSFESATETNLYSYMLYLEREKKSAATVSRSIA 76 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRL 194 S+R +++ +R+ + +P ++ P+ + + T ++ + + +G + R Sbjct: 77 SLRSFYQYLLREHKIDKDPSEHLKAPRVEKKVPEILTIDEADRLLAQPDRKKNKGLRDRA 136 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP--------DGFMKLLA 246 + L +G+R S+ ++ + ++ I ++ + + + Sbjct: 137 MLQLLYCTGIRVSELVHMKMEDVNLDLGYITCRENSRERIIPMTQGTRIILDEYLESARD 196 Query: 247 MTPIGKET--FFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302 GKE+ F N +M+ F K A AG+ K + H +R A G Sbjct: 197 SLLKGKESEYLFCNCSGGEMSRQGFWKVLKVYAQDAGIKKDITPHTMRHSFAAHQLQKGT 256 Query: 303 TAHELMATYGWKTVDQAETY 322 H + G V + Y Sbjct: 257 DIHSVQRMLGHAGVTTMQMY 276 >gi|254478334|ref|ZP_05091713.1| site-specific recombinase, phage integrase family [Carboxydibrachium pacificum DSM 12653] gi|214035692|gb|EEB76387.1| site-specific recombinase, phage integrase family [Carboxydibrachium pacificum DSM 12653] Length = 373 Score = 129 bits (324), Expect = 6e-28, Method: Composition-based stats. Identities = 59/331 (17%), Positives = 117/331 (35%), Gaps = 40/331 (12%) Query: 49 SALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSG 107 AL K E TL+ I+E+ K A + +S +S D II G Sbjct: 42 KALAEIIAKIEKNEFIEPSKITLQQFINEWLKIYGEPKWAPKTLVSNKSLIDNYIIPNLG 101 Query: 108 DFDYRKITTKHIRSGVESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP 164 + +K+ I+ S K ++ + + K+AV+ +Y+A NPC VE P Sbjct: 102 HIELQKLKPVEIQKFYNSLKEKQLSNTTINYVHRLLNQVLKFAVKWQYIAKNPCELVEAP 161 Query: 165 KRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224 K+ + W E +++ K + + + + LY+GLR + C + + +I Sbjct: 162 KKDKKEFVTWNFEHVKKAKKIFKD-TPIYIHVMIALYTGLRLGEICGLRWEDIDFKNQTI 220 Query: 225 KTQKTGTIIT----------------VELPDGFMKLLAMTPIGK---------------E 253 ++T I + +PD +++L + E Sbjct: 221 TVRRTAQRIDGRFIFKEPKTETSKGIISIPDFLVQILKQEKNKQLQNKLIFGEKYVTEYE 280 Query: 254 TFF-INNDKQKMNATQFSIWFKAK-ATKAGVNK-SAHGVRKFSATISADAGATAHELMAT 310 F + D + + F+ ++ + H +R AT+ +G + Sbjct: 281 GFISVWEDGRFKEPDYVTKKFRKILKKQSDIPVIRFHDLRHTHATLMLRSGVDLKIISKR 340 Query: 311 YGWKTVDQAETYTKGADRIRLGIKNSRRISS 341 + + D + + + R++ S Sbjct: 341 LRHGRISTTADFYSHVD-LEMDREALRKLES 370 >gi|320654274|gb|EFX22329.1| Phage integrase family protein [Escherichia coli O55:H7 str. 3256-97 TW 07815] Length = 356 Score = 129 bits (324), Expect = 6e-28, Method: Composition-based stats. Identities = 62/343 (18%), Positives = 115/343 (33%), Gaps = 25/343 (7%) Query: 7 LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHE---STFIPAYMSALTGSTPKREYINS 63 LPP + R+ Y G+ L + I A + +G K Sbjct: 12 LPPNLY---IRNNGYYCYRDPRTGKEFGLGRDRRIAITEAIQANIELFSGHKHKPLTTRI 68 Query: 64 PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123 TL + Y K + + I++ S I R D ITTK I + + Sbjct: 69 NSDNSVTLHSWLDRYEKILASRGIKQKTLINYMSKIKAIRRGLPDAPLEDITTKEIAAML 128 Query: 124 ESRKH--TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 +SA +++ F+ A+ + ++ NP + K + R E ++ Sbjct: 129 NGYIDEGKAASAKLIRSTLSDAFREAIAEGHITTNPVAATRAAKSEVRRSRLTADEYLKI 188 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE----- 236 +++ S RLA E + +G R D C + + ++ KTG I + Sbjct: 189 YQAAESSPCWLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAIPTTLHV 248 Query: 237 ----LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-----NKSAH 287 + +G ET + ++ +++ S +F +G+ + H Sbjct: 249 DALGISMKETLDKCKEILGGETIIASTRREPLSSGTVSRYFMRARKASGLSFEGDPPTFH 308 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 +R + + + G K+ A Y DR R Sbjct: 309 ELR-SLSARLYEKQISDKFAQHLLGHKSDTMASQY--RDDRGR 348 >gi|300907025|ref|ZP_07124694.1| phage integrase, SAM-like domain protein [Escherichia coli MS 84-1] gi|301304025|ref|ZP_07210142.1| phage integrase, SAM-like domain protein [Escherichia coli MS 124-1] gi|331682197|ref|ZP_08382819.1| integrase [Escherichia coli H299] gi|300401246|gb|EFJ84784.1| phage integrase, SAM-like domain protein [Escherichia coli MS 84-1] gi|300840632|gb|EFK68392.1| phage integrase, SAM-like domain protein [Escherichia coli MS 124-1] gi|315257687|gb|EFU37655.1| phage integrase, SAM-like domain protein [Escherichia coli MS 85-1] gi|331080621|gb|EGI51797.1| integrase [Escherichia coli H299] Length = 356 Score = 129 bits (324), Expect = 7e-28, Method: Composition-based stats. Identities = 62/343 (18%), Positives = 115/343 (33%), Gaps = 25/343 (7%) Query: 7 LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHE---STFIPAYMSALTGSTPKREYINS 63 LPP + R+ Y G+ L + I A + +G K Sbjct: 12 LPPNLY---IRNNGYYCYRDPRTGKEFGLGRDRRIAITEAIQANIELFSGHKHKPLTARI 68 Query: 64 PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123 TL + Y K + + I++ S I R D ITTK I + + Sbjct: 69 NSDNSVTLHSWLDRYEKILASRGIKQKTLINYMSKIKAIRRGLPDAPLEDITTKEIAAML 128 Query: 124 ESRKH--TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 +SA +++ F+ A+ + ++ NP + K + R E ++ Sbjct: 129 NGYIDEGKAASAKLIRSTLSDAFREAIAEGHITTNPVAATRAAKSEVRRSRLTADEYLKI 188 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE----- 236 +++ S RLA E + +G R D C + + ++ KTG I + Sbjct: 189 YQAAESSPCWLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAIPTTLHV 248 Query: 237 ----LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-----NKSAH 287 + +G ET + ++ +++ S +F +G+ + H Sbjct: 249 DALGISMKETLDKCKKILGGETIIASTRREPLSSGTVSRYFMRARKASGLSFEGDPPTFH 308 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 +R + + + G K+ A Y DR R Sbjct: 309 ELR-SLSARLYEKQISDKFAQHLLGHKSDTMASQY--RDDRGR 348 >gi|260866896|ref|YP_003233298.1| putative integrase [Escherichia coli O111:H- str. 11128] gi|257763252|dbj|BAI34747.1| putative integrase [Escherichia coli O111:H- str. 11128] gi|323179992|gb|EFZ65548.1| integrase [Escherichia coli 1180] Length = 358 Score = 129 bits (324), Expect = 7e-28, Method: Composition-based stats. Identities = 61/343 (17%), Positives = 113/343 (32%), Gaps = 25/343 (7%) Query: 7 LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMS---ALTGSTPKREYINS 63 LPP + R+ Y G+ L A + +G K Sbjct: 14 LPPNLY---IRNNGYYCYRDPRTGKEFGLGRDRRIAITEAIQANIELFSGHKHKPLTARI 70 Query: 64 PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123 TL + Y K + + I++ S I R D ITTK I + + Sbjct: 71 NSDNSVTLHSWLDRYEKILASRGIKQKTLINYMSKIKAIRRGLPDAPLEDITTKEIAAML 130 Query: 124 ESRKH--TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 +SA +++ F+ A+ + ++ NP + K + R E ++ Sbjct: 131 SGYIDEGKAASAKLIRSTLSDAFREAIAEGHITTNPVAATRAAKSEVRRSRLTADEYLKI 190 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE----- 236 +++ S RLA E + +G R D C + + ++ KTG I + Sbjct: 191 YQAAESSPCWLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAIPTTLHV 250 Query: 237 ----LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-----NKSAH 287 + +G ET + ++ +++ S +F +G+ + H Sbjct: 251 DALGISMKETLDKCKEILGGETIIASTHREPLSSGTVSRYFMRARKASGLSFEGDPPTFH 310 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 +R + + + G K+ A Y DR R Sbjct: 311 ELR-SLSARLYEKQISDKFAQHLLGHKSDTMASQY--RDDRGR 350 >gi|308388941|gb|ADO31261.1| putative integrase/recombinase [Neisseria meningitidis alpha710] Length = 291 Score = 129 bits (324), Expect = 7e-28, Method: Composition-based stats. Identities = 46/280 (16%), Positives = 98/280 (35%), Gaps = 21/280 (7%) Query: 74 LISEYRKSAHWGS--LAVNSRISFESYFDQIIRKSGDFD--YRKITTKHIRSGVESRKHT 129 LI ++ W L+ N+ + ++I R+ + + + V Sbjct: 5 LIDRLLETL-WLDRRLSQNTLNGYRRDLEKIARRLSQSGRMLKDADEADLAAAVYVDGEQ 63 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---- 185 SS + L++ + L+ W R+ NP ++ PK T++ + + + Sbjct: 64 RSSQARALSACKRLYIWMEREGIRTDNPTRLLKPPKIDKNIPTLITEQQISRLLATPDTD 123 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG---- 240 G + + E + +GLR S++ ++ + I K V + Sbjct: 124 TPHGLRDKALLELMYATGLRVSEAVGLNFGNVDLDRGCITALGKGDKQRMVPMGQESAYW 183 Query: 241 ----FMKLLAMTPIGK--ETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFS 293 + + G+ + F++ K ++ + K A +AG+ S H +R Sbjct: 184 VGRYYTEARPALLKGRSCDALFVSQKKTGISRQLAWMIVKEYAGRAGIGHISPHSLRHAF 243 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 AT G + G ++ + YT A+ G+ Sbjct: 244 ATHLVQHGLDLRVVQDMLGHADLNTTQIYTHVANVWLQGV 283 >gi|168750266|ref|ZP_02775288.1| phage integrase family [Escherichia coli O157:H7 str. EC4113] gi|168757063|ref|ZP_02782070.1| phage integrase family [Escherichia coli O157:H7 str. EC4401] gi|168767219|ref|ZP_02792226.1| phage integrase family [Escherichia coli O157:H7 str. EC4486] gi|168776481|ref|ZP_02801488.1| phage integrase family [Escherichia coli O157:H7 str. EC4196] gi|168779262|ref|ZP_02804269.1| phage integrase family [Escherichia coli O157:H7 str. EC4076] gi|168800794|ref|ZP_02825801.1| phage integrase family protein [Escherichia coli O157:H7 str. EC508] gi|193065593|ref|ZP_03046660.1| phage integrase family [Escherichia coli E22] gi|194429706|ref|ZP_03062223.1| phage integrase family protein [Escherichia coli B171] gi|195936762|ref|ZP_03082144.1| lambda integrase [Escherichia coli O157:H7 str. EC4024] gi|208807102|ref|ZP_03249439.1| phage integrase family protein [Escherichia coli O157:H7 str. EC4206] gi|208815031|ref|ZP_03256210.1| phage integrase family protein [Escherichia coli O157:H7 str. EC4045] gi|208822504|ref|ZP_03262823.1| phage integrase family protein [Escherichia coli O157:H7 str. EC4042] gi|209397327|ref|YP_002269402.1| phage integrase family protein [Escherichia coli O157:H7 str. EC4115] gi|254160836|ref|YP_003043944.1| integrase [Escherichia coli B str. REL606] gi|291281709|ref|YP_003498527.1| Phage integrase family [Escherichia coli O55:H7 str. CB9615] gi|307137380|ref|ZP_07496736.1| Phage integrase family protein [Escherichia coli H736] gi|331641269|ref|ZP_08342404.1| integrase [Escherichia coli H736] gi|331645918|ref|ZP_08347021.1| integrase [Escherichia coli M605] gi|187768129|gb|EDU31973.1| phage integrase family [Escherichia coli O157:H7 str. EC4196] gi|188015490|gb|EDU53612.1| phage integrase family [Escherichia coli O157:H7 str. EC4113] gi|189002936|gb|EDU71922.1| phage integrase family [Escherichia coli O157:H7 str. EC4076] gi|189355874|gb|EDU74293.1| phage integrase family [Escherichia coli O157:H7 str. EC4401] gi|189363411|gb|EDU81830.1| phage integrase family [Escherichia coli O157:H7 str. EC4486] gi|189376950|gb|EDU95366.1| phage integrase family protein [Escherichia coli O157:H7 str. EC508] gi|192926778|gb|EDV81405.1| phage integrase family [Escherichia coli E22] gi|194412265|gb|EDX28570.1| phage integrase family protein [Escherichia coli B171] gi|208726903|gb|EDZ76504.1| phage integrase family protein [Escherichia coli O157:H7 str. EC4206] gi|208731679|gb|EDZ80367.1| phage integrase family protein [Escherichia coli O157:H7 str. EC4045] gi|208737989|gb|EDZ85672.1| phage integrase family protein [Escherichia coli O157:H7 str. EC4042] gi|209158727|gb|ACI36160.1| phage integrase family protein [Escherichia coli O157:H7 str. EC4115] gi|253972737|gb|ACT38408.1| integrase [Escherichia coli B str. REL606] gi|290761582|gb|ADD55543.1| Phage integrase family [Escherichia coli O55:H7 str. CB9615] gi|309700991|emb|CBJ00289.1| integrase [Escherichia coli ETEC H10407] gi|315614643|gb|EFU95285.1| integrase [Escherichia coli 3431] gi|320643338|gb|EFX12524.1| Phage integrase family protein [Escherichia coli O157:H- str. 493-89] gi|320648681|gb|EFX17319.1| Phage integrase family protein [Escherichia coli O157:H- str. H 2687] gi|320664810|gb|EFX31948.1| Phage integrase family protein [Escherichia coli O157:H7 str. LSU-61] gi|323158819|gb|EFZ44832.1| integrase [Escherichia coli E128010] gi|323191112|gb|EFZ76377.1| integrase [Escherichia coli RN587/1] gi|326345702|gb|EGD69441.1| Phage integrase [Escherichia coli O157:H7 str. 1125] gi|327254456|gb|EGE66078.1| integrase [Escherichia coli STEC_7v] gi|331038067|gb|EGI10287.1| integrase [Escherichia coli H736] gi|331044670|gb|EGI16797.1| integrase [Escherichia coli M605] Length = 356 Score = 129 bits (324), Expect = 7e-28, Method: Composition-based stats. Identities = 62/343 (18%), Positives = 115/343 (33%), Gaps = 25/343 (7%) Query: 7 LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHE---STFIPAYMSALTGSTPKREYINS 63 LPP + R+ Y G+ L + I A + +G K Sbjct: 12 LPPNLY---IRNNGYYCYRDPRTGKEFGLGRDRRIAITEAIQANIELFSGHKHKPLTARI 68 Query: 64 PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123 TL + Y K + + I++ S I R D ITTK I + + Sbjct: 69 NSDNSVTLHSWLDRYEKILASRGIKQKTLINYMSKIKAIRRGLPDAPLEDITTKEIAAML 128 Query: 124 ESRKH--TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 +SA +++ F+ A+ + ++ NP + K + R E ++ Sbjct: 129 NGYIDEGKAASAKLIRSTLSDAFREAIAEGHITTNPVAATRAAKSEVRRSRLTADEYLKI 188 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE----- 236 +++ S RLA E + +G R D C + + ++ KTG I + Sbjct: 189 YQAAESSPCWLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAIPTTLHV 248 Query: 237 ----LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-----NKSAH 287 + +G ET + ++ +++ S +F +G+ + H Sbjct: 249 DALGISMKETLDKCKEILGGETIIASTRREPLSSGTVSRYFMRARKASGLSFEGDPPTFH 308 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 +R + + + G K+ A Y DR R Sbjct: 309 ELR-SLSARLYEKQISDKFAQHLLGHKSDTMASQY--RDDRGR 348 >gi|291561258|emb|CBL40057.1| tyrosine recombinase XerD subunit [butyrate-producing bacterium SS3/4] Length = 284 Score = 129 bits (324), Expect = 7e-28, Method: Composition-based stats. Identities = 41/261 (15%), Positives = 85/261 (32%), Gaps = 22/261 (8%) Query: 88 AVNSRISFESYFDQIIRKSGD------FDYRKITTKHIRSGVESRKHTPSSAIQFLTSMR 141 + N+ +S++ ++ + K +E S+ + L S R Sbjct: 8 SKNTTLSYQRDLLKMADYLEENGITDCGKVTKTALNSYILFLEKEGKAASTVSRALASTR 67 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRLAFE 197 F W ++ + +P S+ PK + + T +++ + + + + E Sbjct: 68 SFFGWLFKEGRIRRDPADSMHAPKIEKKVPVILTVDEVTKLLEQPSGANPKEIRDKAMLE 127 Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL----PDGFMKLLAMTP---- 249 L +G+R ++ + + +I I + + D K L Sbjct: 128 LLYATGIRVTELVNLKLSDVNMSIGFITCRDEHKERMIPFGHAAKDALAKYLESASETFL 187 Query: 250 --IGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAH 305 E F N + M+ F K +AG+ + + H +R A GA Sbjct: 188 KGTRSELLFTNYSGRAMSRQGFWKIIKYYGERAGIEEDITPHTLRHSFAAHLLSNGADMR 247 Query: 306 ELMATYGWKTVDQAETYTKGA 326 + G + + YT A Sbjct: 248 AVQTMMGHSDLASTQMYTAYA 268 >gi|261392878|emb|CAX50459.1| tyrosine recombinase XerD [Neisseria meningitidis 8013] gi|325144209|gb|EGC66516.1| tyrosine recombinase XerD [Neisseria meningitidis M01-240013] gi|325203840|gb|ADY99293.1| tyrosine recombinase XerD [Neisseria meningitidis M01-240355] gi|325206404|gb|ADZ01857.1| tyrosine recombinase XerD [Neisseria meningitidis M04-240196] Length = 291 Score = 129 bits (324), Expect = 7e-28, Method: Composition-based stats. Identities = 46/280 (16%), Positives = 98/280 (35%), Gaps = 21/280 (7%) Query: 74 LISEYRKSAHWGS--LAVNSRISFESYFDQIIRKSGDFD--YRKITTKHIRSGVESRKHT 129 LI ++ W L+ N+ + ++I R+ + + + V Sbjct: 5 LIDRLLETL-WLDRRLSQNTLNGYRRDLEKIARRLSQSGRMLKDADEADLAAAVYVDGEQ 63 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---- 185 SS + L++ + L+ W R+ NP ++ PK T++ + + + Sbjct: 64 RSSQARALSACKRLYIWMEREGIRTDNPTRLLKPPKIDKNIPTLITEQQISRLLATPDTD 123 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG---- 240 G + + E + +GLR S++ ++ + I K V + Sbjct: 124 TPHGLRDKALLELMYATGLRVSEAVGLNFGNVDLDRGCITALGKGDKQRMVPMGQESAYW 183 Query: 241 ------FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFS 293 + L + + F++ K ++ + K A++AG+ S H +R Sbjct: 184 VERYYTEARPLLLKGRNCDALFVSQKKTGISRQLAWMIVKEYASQAGIGHISPHSLRHAF 243 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 AT G + G ++ + YT A+ G+ Sbjct: 244 ATHLVRHGLDLRVVQDMLGHADLNTTQIYTHVANVWLQGV 283 >gi|300919957|ref|ZP_07136417.1| phage integrase, SAM-like domain protein [Escherichia coli MS 115-1] gi|300413014|gb|EFJ96324.1| phage integrase, SAM-like domain protein [Escherichia coli MS 115-1] Length = 356 Score = 129 bits (324), Expect = 7e-28, Method: Composition-based stats. Identities = 62/343 (18%), Positives = 115/343 (33%), Gaps = 25/343 (7%) Query: 7 LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHE---STFIPAYMSALTGSTPKREYINS 63 LPP + R+ Y G+ L + I A + +G K Sbjct: 12 LPPNLY---IRNNGYYCYRDPRTGKEFGLGRDRRIAITEAIQANIELFSGHKHKPLTARI 68 Query: 64 PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123 TL + Y K + + I++ S I R D ITTK I + + Sbjct: 69 NSDNSVTLHSWLDRYEKILASRGIKQKTLINYMSKIKAIRRGLPDAPLENITTKEIAAML 128 Query: 124 ESRKH--TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 +SA +++ F+ A+ + ++ NP + K + R E ++ Sbjct: 129 NGYIDEGKAASAKLIRSTLSDAFREAIAEGHITTNPVAATRAAKSEVRRSRLTADEYLKI 188 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE----- 236 +++ S RLA E + +G R D C + + ++ KTG I + Sbjct: 189 YQAAESSPCWLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAIPTTLHV 248 Query: 237 ----LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-----NKSAH 287 + +G ET + ++ +++ S +F +G+ + H Sbjct: 249 DALGISMKETLDKCKEILGGETIIASTRREPLSSGTVSRYFMRARKASGLSFEGDPPTFH 308 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 +R + + + G K+ A Y DR R Sbjct: 309 ELR-SLSARLYEKQISDKFAQHLLGHKSDTMASQY--RDDRGR 348 >gi|302335678|ref|YP_003800885.1| integrase family protein [Olsenella uli DSM 7084] gi|301319518|gb|ADK68005.1| integrase family protein [Olsenella uli DSM 7084] Length = 308 Score = 129 bits (324), Expect = 7e-28, Method: Composition-based stats. Identities = 52/289 (17%), Positives = 101/289 (34%), Gaps = 26/289 (8%) Query: 71 LKWLISEYRKSAH-WGSLAVNSRISFESYFDQI-----IRKSGDFDYRKITTKHIRSGVE 124 L L+ + +L+ N+ ++ + + D + + Sbjct: 12 LDALLRRFLSDLSVTRNLSENTIRAYGTDLAAYARWTRRQGVDPLDVTHSQLRAYLGELV 71 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 +++ + + L+++R L++W VR+ Y + ++ PK + T D+ Q Sbjct: 72 RARYSSRTLNRRLSAIRTLYRWLVREGYTNKDAAAAIASPKVARTLPKTMTDPDVCQLLG 131 Query: 185 FWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPD 239 E G + R E L SG R S+ R V + + K G V L D Sbjct: 132 ACDEDGVIGLRDRALIELLYASGARISEISRLDVGDIDRERRQVTLLGKGGKERIVPLYD 191 Query: 240 ------------GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--S 285 L+ E F++ ++M+A F+ + AG++ + Sbjct: 192 MCIDELDAYLLTARPALVVRGEGASEALFVSTRGRRMSAAALREAFERRVRLAGLDADIT 251 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGI 333 H +R AT GA + G ++ + YT DR++ Sbjct: 252 PHAMRHTYATELLSGGADLRSVQELLGHSSLSTTQIYTHLSVDRLKAAA 300 >gi|56963097|ref|YP_174824.1| phage-related integrase/recombinase [Bacillus clausii KSM-K16] gi|56909336|dbj|BAD63863.1| phage-related integrase/recombinase [Bacillus clausii KSM-K16] Length = 321 Score = 129 bits (324), Expect = 7e-28, Method: Composition-based stats. Identities = 42/277 (15%), Positives = 95/277 (34%), Gaps = 22/277 (7%) Query: 70 TLKWLISEYRKSAHWGSLAVNS-------RISFESYFDQIIRKSGDFDYRKITTKHIRSG 122 T + + + + + A + F+ ++ + Sbjct: 25 TFEKAVELFIRDVKLKNRADATVTFYKNELKGFKRTLKEMNLPIEPAKVTPFMIEEFAFH 84 Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 + + L ++R LF + ++ + NP ++ K I P++K+ +Q+ Sbjct: 85 MMEEGSKAGAVNARLRAVRALFNFLFKKRLIPENPVADLKLLKNIKGDIIPFSKDQLQRL 144 Query: 183 KSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVE 236 + G + + +L +G+R + C+ + + +N I+ K G + V Sbjct: 145 FNQADRRTFTGLRNYVMMMVMLDTGVRVKELCQIDMVDVLWDDNSIVIRHPKNGYVRRVP 204 Query: 237 LPDGFMKLL------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAH 287 + + +K L IG F+ D ++++ Q + A + S H Sbjct: 205 ISEETIKALEQYVNHRGQNIGNNALFVTLDDKRISKRQVQNFLSQYGKGASITDVRCSPH 264 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 R A ++ GA EL G +++ Y Sbjct: 265 TFRHTFAKMALQGGANMFELQQILGHSSLEMVRVYVH 301 >gi|218767874|ref|YP_002342386.1| putative integrase/recombinase [Neisseria meningitidis Z2491] gi|34223068|sp|Q9JV76|XERD_NEIMA RecName: Full=Tyrosine recombinase xerD gi|121051882|emb|CAM08188.1| putative integrase/recombinase [Neisseria meningitidis Z2491] gi|319410121|emb|CBY90457.1| tyrosine recombinase XerD [Neisseria meningitidis WUE 2594] Length = 291 Score = 129 bits (324), Expect = 7e-28, Method: Composition-based stats. Identities = 46/280 (16%), Positives = 98/280 (35%), Gaps = 21/280 (7%) Query: 74 LISEYRKSAHWGS--LAVNSRISFESYFDQIIRKSGDFD--YRKITTKHIRSGVESRKHT 129 LI ++ W L N+ + ++I R+ + + + V Sbjct: 5 LIDRLLETL-WLDRRLNQNTLNGYRRDLEKIARRLSQSGRMLKDADEADLAAAVYVDGEQ 63 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---- 185 SS + L++ + L+ W R+ NP ++ PK T++ + + + Sbjct: 64 RSSQARALSACKRLYIWMEREGIRTDNPTRLLKPPKIDKNIPTLITEQQISRLLAAPDTD 123 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG---- 240 G + + E + +GLR S++ ++ + I K V + Sbjct: 124 TPHGLRDKALLELMYATGLRVSEAVGLNFGNVDLDRGCITALGKGDKQRMVPMGQESAYW 183 Query: 241 ----FMKLLAMTPIGK--ETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFS 293 + + G+ + F++ K ++ + K A++AG+ S H +R Sbjct: 184 VGRYYTEARPALLKGRSCDALFVSQKKTGISRQLAWMIVKEYASQAGIGHISPHSLRHAF 243 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 AT G + G ++ + YT A+ G+ Sbjct: 244 ATHLVQHGLDLRVVQDMLGHADLNTTQIYTHVANVWLQGV 283 >gi|307566131|ref|ZP_07628589.1| site-specific recombinase, phage integrase family [Prevotella amnii CRIS 21A-A] gi|307345319|gb|EFN90698.1| site-specific recombinase, phage integrase family [Prevotella amnii CRIS 21A-A] Length = 407 Score = 129 bits (324), Expect = 7e-28, Method: Composition-based stats. Identities = 51/274 (18%), Positives = 100/274 (36%), Gaps = 25/274 (9%) Query: 76 SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR------KHT 129 Y S L + +I+ + D + + +++ + +E + Sbjct: 128 QAYIDSYTKKDLRMI-KIALNRFKDFLKEQYPLYEFSIKPDLITKDMMERFVEYLQSRSV 186 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR--PWTKEDMQQFKSFWS 187 A + + ++A+ E + +PC V K + +R + +++Q Sbjct: 187 GEGAKSIYQRFKKVVRYAIDHEVMLKDPCKDV-VCKVDDQILRKDVLSMDEIQSLIQCHY 245 Query: 188 EGSQP--RLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTG-----TIITVELP 238 + P R AF LY GLR D +++ N + + KT + + + L Sbjct: 246 DNENPNVRRAFILCLYCGLRFCDVKDLTYKNIDYTNRLLKFEQNKTKGHSAHSGVVIPLN 305 Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATI 296 DG + L+ P ++ N + S K +AG+NK S H R A Sbjct: 306 DGLLSLIGDAPEDLDSSIFNLP----SYESCSKSVKRWVKRAGINKHISWHCARHSFAVN 361 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 + GA + + G + E YT+ D+++ Sbjct: 362 ILNNGANIKTVASLLGHSGLKHTEKYTRAVDKLK 395 >gi|304387940|ref|ZP_07370113.1| tyrosine recombinase XerD [Neisseria meningitidis ATCC 13091] gi|304338037|gb|EFM04174.1| tyrosine recombinase XerD [Neisseria meningitidis ATCC 13091] Length = 291 Score = 129 bits (324), Expect = 7e-28, Method: Composition-based stats. Identities = 46/280 (16%), Positives = 95/280 (33%), Gaps = 21/280 (7%) Query: 74 LISEYRKSAHWGS--LAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESRKHT 129 LI ++ W L+ N+ + ++I R+ + + + V Sbjct: 5 LIDRLLETL-WLDRRLSQNTLNGYRRDLEKIARRLSQSGRTLKDADEADLAAAVYVDGEQ 63 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---- 185 SS + L++ + L+ W R+ NP ++ PK T++ + + + Sbjct: 64 RSSQARALSACKRLYIWMEREGIRTDNPTRLLKPPKIDKNIPTLITEQQISRLLATPDTD 123 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG---- 240 G + + E + +GLR S++ + I K V + Sbjct: 124 TPHGLRDKALLELMYATGLRVSEAVGLNFGSVDLGRGCITALGKGDKQRMVPMGQESAYW 183 Query: 241 ------FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFS 293 + L + + F++ K ++ + K A +AG+ S H +R Sbjct: 184 VERYYTEARPLLLKGRSCDALFVSQKKTGISRQLAWMIVKEYAGRAGIGHISPHSLRHAF 243 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 AT G + G ++ + YT A+ G+ Sbjct: 244 ATHLVQHGLDLRVVQDMLGHADLNTTQIYTHVANVWLQGV 283 >gi|160900549|ref|YP_001566131.1| tyrosine recombinase XerD [Delftia acidovorans SPH-1] gi|160366133|gb|ABX37746.1| tyrosine recombinase XerD [Delftia acidovorans SPH-1] Length = 327 Score = 129 bits (324), Expect = 7e-28, Method: Composition-based stats. Identities = 43/274 (15%), Positives = 88/274 (32%), Gaps = 23/274 (8%) Query: 86 SLAVNSRISFESYF----DQIIRKSGDFDYRKITTKHIRSGVESR--KHTPSSAIQFLTS 139 L+ N+ ++ + + ++ R + SS+ + LT Sbjct: 49 GLSRNTLAAYRRDLTAWGRWLAHQQPPLALDAAGELELQGYFAVRVEQTKASSSNRRLTV 108 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195 +R + WA+R++ +A +P + ++ T+ ++ G + R Sbjct: 109 LRRYYHWALREQRIAADPTARMLAARQPPRVPHTLTQAQVEALLRAPDVDTPLGLRDRAM 168 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV--------ELPDGFMKLLAM 247 E + SGLR S+ + + ++ G + + ++ Sbjct: 169 LELMYASGLRVSELVDLPLHGIDLRSGVLRVTGKGQKERLVPFGQEAHWWLERYLATARG 228 Query: 248 TPIGK---ETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGA 302 +G + F+ M+ F + K A AGV S H +R AT + GA Sbjct: 229 AILGGQRSDAVFVTQRGAAMSRVMFWVIVKRCAQVAGVTAPLSPHTLRHAFATHLLNHGA 288 Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336 + G + YT A + Sbjct: 289 DLRVVQMLLGHADISTTTIYTHVARERLKALHAL 322 >gi|167036461|ref|YP_001664039.1| phage integrase family protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320114886|ref|YP_004185045.1| integrase family protein [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166855295|gb|ABY93703.1| phage integrase family protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319927977|gb|ADV78662.1| integrase family protein [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 373 Score = 129 bits (324), Expect = 7e-28, Method: Composition-based stats. Identities = 59/331 (17%), Positives = 117/331 (35%), Gaps = 40/331 (12%) Query: 49 SALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSG 107 AL K E TL+ I+E+ K A + +S +S D II G Sbjct: 42 KALAEIIAKIEKNEFIEPSKITLQQFINEWLKIYGEPKWAPKTLVSNKSLIDNYIIPNLG 101 Query: 108 DFDYRKITTKHIRSGVESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP 164 + +K+ I+ S K ++ + + K+AV+ +Y+A NPC VE P Sbjct: 102 HIELQKLKPVEIQKFYNSLKEKQLSNTTINYVHRLLNQVLKFAVKWQYIAKNPCELVEAP 161 Query: 165 KRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224 K+ + W E +++ K + + + + LY+GLR + C + + +I Sbjct: 162 KKDKKEFVTWNFEHVKKAKKIFKD-TPIYIHVMIALYTGLRLGEICGLRWEDIDFKNQTI 220 Query: 225 KTQKTGTIIT----------------VELPDGFMKLLAMTPIGK---------------E 253 ++T I + +PD +++L + E Sbjct: 221 TVRRTAQRIDGRFIFKEPKTETSKGIISIPDFLVQILKQEKNKQLQNKLIFGEKYITEYE 280 Query: 254 TFF-INNDKQKMNATQFSIWFKAK-ATKAGVNK-SAHGVRKFSATISADAGATAHELMAT 310 F + D + + F+ ++ + H +R AT+ +G + Sbjct: 281 GFISVWEDGRFKEPDYVTKKFRKILKKQSDIPVIRFHDLRHTHATLMLRSGVDLKIISKR 340 Query: 311 YGWKTVDQAETYTKGADRIRLGIKNSRRISS 341 + + D + + + R++ S Sbjct: 341 LRHGRISTTADFYSHVD-LEMDREALRKLES 370 >gi|85059134|ref|YP_454836.1| putative phage integrase [Sodalis glossinidius str. 'morsitans'] gi|84779654|dbj|BAE74431.1| putative phage integrase [Sodalis glossinidius str. 'morsitans'] Length = 281 Score = 129 bits (324), Expect = 7e-28, Method: Composition-based stats. Identities = 40/237 (16%), Positives = 81/237 (34%), Gaps = 10/237 (4%) Query: 51 LTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD 110 + K E + + +KP T L ++ S ++ L ++ + + ++ G+ Sbjct: 43 IAAVWKKYEEVVNQARKPITFSQLWEKFISSTYFIELKPRTQQDYMQHQKKLFSVFGEMK 102 Query: 111 YRKITTKHIRSGVESRK-HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169 I +H+R ++ R + A + SM +++W + YV NPC V + K Sbjct: 103 ADGIKPEHVREFMDKRGLQRKTQANHEMASMSRVYRWGYERGYVKANPCAGVMKFKAVKR 162 Query: 170 GIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229 +E + +++ ++A E R SD Q + I+ KT Sbjct: 163 DRHITDEEYLAIYRAADDI---VKIAMEIAYLCAARLSDVLGMKWQQITEQGIFIQQGKT 219 Query: 230 GTIITVELPDGFMKLLAMTPI------GKETFFINNDKQKMNATQFSIWFKAKATKA 280 G + + + K + FS + +KA Sbjct: 220 GIKQIKAWTPRIQAAIDRAKVFSTPANATSAVIMGQHKGHYSKRGFSNRWMEARSKA 276 >gi|294102502|ref|YP_003554360.1| integrase family protein [Aminobacterium colombiense DSM 12261] gi|293617482|gb|ADE57636.1| integrase family protein [Aminobacterium colombiense DSM 12261] Length = 297 Score = 129 bits (324), Expect = 7e-28, Method: Composition-based stats. Identities = 38/268 (14%), Positives = 99/268 (36%), Gaps = 16/268 (5%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE----- 124 L + + Y + + S+++ + ++ +Q + + + ++ R E Sbjct: 7 LSFALDYYLEQMRFAKSMSMYTIENYAVDLNQFVNYLLEQNVTLLSEVDTRIIREYLRVL 66 Query: 125 -SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 S + SS + L++++ F + V ++ V +P +V+ P+ R + E + + Sbjct: 67 ASFGYARSSVARKLSAIKNWFAFLVDKKLVGKDPAKNVKGPRLPGRLPRALSVEQVSRLI 126 Query: 184 ----SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELP 238 + ++ + + E L GLR + + + ++ + G + + Sbjct: 127 EVGCAKSADPLRDKAVLELLYGCGLRIGELVVLRWEDIDFAERWVRVRGKGNKERMIPVG 186 Query: 239 DGFMKLLAMTPIGKET---FFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSA 294 +K L + F + + A +AG++ + H +R A Sbjct: 187 KMAIKALYNWRDSCQMGIFLFTGEEGSHLTVRTVGRIVDRAAKRAGLSGVTPHMLRHSFA 246 Query: 295 TISADAGATAHELMATYGWKTVDQAETY 322 T + GA+ + G +++ + Y Sbjct: 247 THMLEGGASIRVVQELLGHESLITTQRY 274 >gi|213616311|ref|ZP_03372137.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 267 Score = 129 bits (324), Expect = 7e-28, Method: Composition-based stats. Identities = 39/233 (16%), Positives = 80/233 (34%), Gaps = 18/233 (7%) Query: 112 RKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171 + + + + + +S+ + L++MR F+ R++Y +P + PK Sbjct: 20 QADDLQTLLAERVEGGYKATSSARLLSAMRRFFQHLYREKYREDDPSAQLASPKLPQRLP 79 Query: 172 RPWTKEDMQQFKSF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT- 226 + ++ +++ + + E L +GLR S+ + + ++ Sbjct: 80 KDLSEAQVERLLQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVI 139 Query: 227 QKTGTIITVELPDGFMKLLAMTPIGKETFFIN----------NDKQKMNATQFSIWFKAK 276 K V L + + L + +N Q+M F K Sbjct: 140 GKGNKERLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHY 199 Query: 277 ATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 A AG++ S H +R AT + GA + G + + YT A Sbjct: 200 AVLAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA 252 >gi|94969887|ref|YP_591935.1| tyrosine recombinase XerC subunit [Candidatus Koribacter versatilis Ellin345] gi|94551937|gb|ABF41861.1| tyrosine recombinase XerC subunit [Candidatus Koribacter versatilis Ellin345] Length = 300 Score = 129 bits (324), Expect = 7e-28, Method: Composition-based stats. Identities = 55/284 (19%), Positives = 103/284 (36%), Gaps = 27/284 (9%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHTP 130 ++++ +S + +V++ ++ + ++ G + I IR + + P Sbjct: 10 VAQFLRSLKEKNSSVHTIKAYTTDLEEFSAFLGPAKWDDIDHVRIRGFLSHLYDKGLSKP 69 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM-----QQFKSF 185 S A + L ++R L+KW R+ +V NP V PK + R T E++ + Sbjct: 70 SVA-RALAALRSLYKWLAREGFVEQNPAALVATPKLPKKLPRVPTMEELNTVMDAEMPEA 128 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDG--- 240 S + L FE L G+R S+ + ++ N I+ K V D Sbjct: 129 ASFPERDALIFELLYGCGIRNSELTGINLDDIRWSNEAILIR-GKGKKERFVPFGDAAAV 187 Query: 241 --------FMKLLAMTPIGKETFFINNDK-QKMNATQFSIWFKAKATKAGVNKS--AHGV 289 +LA IN Q++ + K A G+ H + Sbjct: 188 AAKVYLKKRQDILAERHKSTNALLINLRDVQRLTSRSVGRIVKKIAVARGLPADVHPHTL 247 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 R T + GA + G + + + YT+ + R L + Sbjct: 248 RHAFGTHLLEEGADLRAIQELLGHERLATTQRYTQLSTRHVLEV 291 >gi|281602227|gb|ADA75211.1| Tyrosine recombinase xerD [Shigella flexneri 2002017] Length = 273 Score = 129 bits (324), Expect = 7e-28, Method: Composition-based stats. Identities = 38/256 (14%), Positives = 86/256 (33%), Gaps = 23/256 (8%) Query: 94 SFESYFDQIIRKSGDFDY-----RKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAV 148 ++ ++ + + + + + +S+ + L+++R LF++ Sbjct: 3 AYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGYKATSSARLLSAVRRLFQYLY 62 Query: 149 RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAFEFLLYSGL 204 R+++ +P + PK + ++ +++ + + E L +GL Sbjct: 63 REKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLIDQPLELRDKAMLEVLYATGL 122 Query: 205 RCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGKETFFIN----- 258 R S+ + + ++ K V L + + L + +N Sbjct: 123 RVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVYWLETYLEHGRPWLLNGVSID 182 Query: 259 -----NDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHELMAT 310 Q+M F K A AG++ S H +R AT + GA + Sbjct: 183 VLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQML 242 Query: 311 YGWKTVDQAETYTKGA 326 G + + YT A Sbjct: 243 LGHSDLSTTQIYTHVA 258 >gi|261343068|ref|ZP_05970926.1| tyrosine recombinase XerC [Enterobacter cancerogenus ATCC 35316] gi|288314633|gb|EFC53571.1| tyrosine recombinase XerC [Enterobacter cancerogenus ATCC 35316] Length = 300 Score = 129 bits (324), Expect = 7e-28, Method: Composition-based stats. Identities = 44/259 (16%), Positives = 93/259 (35%), Gaps = 19/259 (7%) Query: 85 GSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSGV---ESRKHTPSSAIQFLT 138 L+ + ++++ D I + G +++ +R V +K +P+S L+ Sbjct: 21 RQLSPVTLLNYQRQLDAIMQIADEIGLKSWQQCDAATVRGFVVRSRKKKLSPASLALRLS 80 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---WSEGSQPRLA 195 ++R F W V Q + NP + PK + +D+ + + R Sbjct: 81 ALRSFFDWLVSQGVLKANPAKGIATPKAPRHLPKNIDVDDVNRLLDIDLNDPLAVRDRAM 140 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT--------VELPDGFMKLLAM 247 E + +GLR S+ ++HL + G+ V + ++ L + Sbjct: 141 LEVMYGAGLRLSELVNLDLKHLDLESGEVWVMGKGSKERRLPIGRNAVSWIEHWLDLRGL 200 Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAH 305 + F++ ++++A F K G+N H +R AT ++ Sbjct: 201 FGAEENALFLSKLGKRISARNVQKRFAEWGIKQGLNSHVHPHKLRHSFATHMLESSGDLR 260 Query: 306 ELMATYGWKTVDQAETYTK 324 + G + + YT Sbjct: 261 GVQELLGHANLSTTQIYTH 279 >gi|239816431|ref|YP_002945341.1| tyrosine recombinase XerD [Variovorax paradoxus S110] gi|239803008|gb|ACS20075.1| tyrosine recombinase XerD [Variovorax paradoxus S110] Length = 303 Score = 129 bits (324), Expect = 8e-28, Method: Composition-based stats. Identities = 48/270 (17%), Positives = 96/270 (35%), Gaps = 25/270 (9%) Query: 86 SLAVNSRISFESYFDQIIRKSGDFD-------YRKITTKHIRSGVESRKHTPSSAIQFLT 138 L+ N+ ++ + G ++ + S + +SA + LT Sbjct: 24 GLSKNTLAAYRRDLALFAQWLGSQRSGRALDTAQESDLQAYMGARLSTRGKATSANRRLT 83 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRL 194 + ++WA+R+ +A +P + + ++ I+ +++ + + G + R Sbjct: 84 VFKRYYRWALRERRIAADPSIRLAPARQMPRAIKTLSEKQVDDLLAAPDVETPLGLRDRA 143 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------ELPDGFMKLL 245 E + SGLR S+ V + N ++ G+ + + + Sbjct: 144 MLELMYASGLRVSELVALKVIDMSLNDGVLRVLGKGSKERLVPFGGEARRWIERYLDESR 203 Query: 246 AMTPIGKET--FFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAG 301 G++T F+ M F I K +A AG++ S H +R AT + G Sbjct: 204 PTILDGQQTPDLFVTARGAGMTRVMFWIIVKKQAAAAGIHVPLSPHTLRHAFATHLLNRG 263 Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRL 331 + G + YT A R RL Sbjct: 264 VDLRAVQLLLGHADISTTTIYTHVA-RERL 292 >gi|302871811|ref|YP_003840447.1| integrase family protein [Caldicellulosiruptor obsidiansis OB47] gi|302574670|gb|ADL42461.1| integrase family protein [Caldicellulosiruptor obsidiansis OB47] Length = 328 Score = 129 bits (323), Expect = 8e-28, Method: Composition-based stats. Identities = 55/285 (19%), Positives = 107/285 (37%), Gaps = 24/285 (8%) Query: 66 KKPTTLKWL---ISEYRKSAHWGSLAVNSRISFESYFDQI-IRKSGDFDYRKITTKHIRS 121 K P T+K + + + L V ++I + I + + IT ++ Sbjct: 23 KSPNTIKEYYYDLRTFLRYLKAKDLNVLNQIEKIEDLENIDVSSFEIEKLKTITLSNLYE 82 Query: 122 GVE----SRKHTPSSAIQFLTSMRVLFKWAV-RQEYVAINPCLSVERPKRKTEGIRPWTK 176 ++P S + + S+R FK+ + + + NP +E PK R T Sbjct: 83 YFSFLATRFNNSPYSRARKVASIRSFFKYLYSKAKLIPDNPAKDLESPKLGKRNPRYLTL 142 Query: 177 EDMQQFKSFWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT 234 E+ ++ S ++ R L GLR S+ + +++++ I K Sbjct: 143 EESKKLLSAIDGENKERDFAIITLFLNCGLRLSELVNINLSDIKDDMLRI-VGKGNKERI 201 Query: 235 VELPDGFMKL----LAMTPI----GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-- 284 + L + L + P K+ F++ K++++ + AG+N+ Sbjct: 202 IYLNKACKEAIENYLKVRPTEGVKDKDALFLSERKKRISRRTVQYIVEKYVKMAGINQKK 261 Query: 285 -SAHGVRKFSATISADAGA-TAHELMATYGWKTVDQAETYTKGAD 327 SAH +R +AT+ G L G +++ E YT D Sbjct: 262 ISAHKLRHTAATLMYRHGKVDIRSLQTILGHQSISTTEIYTHVND 306 >gi|266621718|ref|ZP_06114653.1| integrase/recombinase XerD [Clostridium hathewayi DSM 13479] gi|288866619|gb|EFC98917.1| integrase/recombinase XerD [Clostridium hathewayi DSM 13479] Length = 295 Score = 129 bits (323), Expect = 8e-28, Method: Composition-based stats. Identities = 45/260 (17%), Positives = 93/260 (35%), Gaps = 22/260 (8%) Query: 85 GSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSG---VESRKHTPSSAIQFLT 138 + N+ +S+ Q+ + + G D K+T + S +E ++ + L Sbjct: 16 KKTSKNTEVSYHRDLLQMASYLEEQGITDVEKVTKTSLNSYVLHLEKEGRATTTISRTLA 75 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRL 194 SM+ F + + + +P ++ PK + + T E++ + + + Sbjct: 76 SMKAFFHYEYGEGRIRRDPAELIKAPKIEKKAPTILTVEEVNSLLEQPTGDSPKELRDKA 135 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL--------A 246 E L +G+R S+ V+ + + I + + + + A Sbjct: 136 MLELLYATGIRVSELIHLKVEDMNLAVGFITCRDEHKERMIPFGKVARQAMVNYMESGRA 195 Query: 247 MTPIGKET--FFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGA 302 G+E+ F N + M+ F K KAG+ + + H +R A GA Sbjct: 196 SLLKGQESEWLFTNCSGRPMSRQGFWKIIKYYGEKAGIQADITPHTLRHSFAAHLLGNGA 255 Query: 303 TAHELMATYGWKTVDQAETY 322 H + A G + + Y Sbjct: 256 DIHAVQAMMGHSDMATTQMY 275 >gi|9634162|ref|NP_037720.1| integrase [Enterobacteria phage HK97] gi|218694191|ref|YP_002401858.1| Integrase from phage [Escherichia coli 55989] gi|309797063|ref|ZP_07691462.1| phage integrase, SAM-like domain protein [Escherichia coli MS 145-7] gi|331676448|ref|ZP_08377145.1| integrase [Escherichia coli H591] gi|6901591|gb|AAF31094.1|AF069529_7 integrase [Enterobacteria phage HK97] gi|218350923|emb|CAU96623.1| Integrase from phage [Escherichia coli 55989] gi|308119346|gb|EFO56608.1| phage integrase, SAM-like domain protein [Escherichia coli MS 145-7] gi|331075941|gb|EGI47238.1| integrase [Escherichia coli H591] Length = 356 Score = 129 bits (323), Expect = 8e-28, Method: Composition-based stats. Identities = 62/343 (18%), Positives = 115/343 (33%), Gaps = 25/343 (7%) Query: 7 LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHE---STFIPAYMSALTGSTPKREYINS 63 LPP + R+ Y G+ L + I A + +G K Sbjct: 12 LPPNLY---IRNNGYYCYRDPRTGKEFGLGRDRRIAITEAIQANIELFSGHKHKPLTARI 68 Query: 64 PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123 TL + Y K + + I++ S I R D ITTK I + + Sbjct: 69 NSDNSVTLHSWLDRYEKILASRGIKQKTLINYMSKIKAIRRGLPDAPLEDITTKEIAAML 128 Query: 124 ESRKH--TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 +SA +++ F+ A+ + ++ NP + K + R E ++ Sbjct: 129 NGYIDEGKAASAKLIRSTLSDAFREAIAEGHITTNPVAATRAAKSEVRRSRLTADEYLKI 188 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE----- 236 +++ S RLA E + +G R D C + + ++ KTG I + Sbjct: 189 YQAAESSPCWLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAIPTALHV 248 Query: 237 ----LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-----NKSAH 287 + +G ET + ++ +++ S +F +G+ + H Sbjct: 249 DALGISMKETLDKCKEILGGETIIASTRREPLSSGTVSRYFMRARKASGLSFEGDPPTFH 308 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 +R + + + G K+ A Y DR R Sbjct: 309 ELR-SLSARLYEKQISDKFAQHLLGHKSDTMASQY--RDDRGR 348 >gi|4490352|emb|CAB38715.1| integrase-like protein [Enterobacteria phage H19J] Length = 357 Score = 129 bits (323), Expect = 8e-28, Method: Composition-based stats. Identities = 60/341 (17%), Positives = 110/341 (32%), Gaps = 23/341 (6%) Query: 7 LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMS---ALTGSTPKREYINS 63 LPP + R+ Y G+ L A + L+ S K Sbjct: 12 LPPNLY---IRNNGYYCYRDPRTGKEFGLGRDRRIAITEAIQANIELLSDSGRKSLIDRI 68 Query: 64 PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123 TL + Y + + + + + S I RK D I+TK + + + Sbjct: 69 KGGDAITLHVWLDRYERILTERGIRPKTLLDYASKIRAIRRKLPDKPLTDISTKEVAAML 128 Query: 124 ESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 + + +SA +++ +F+ A+ + +VA NP + K + R E ++ Sbjct: 129 NTNVAEGKAASAKLIRSTLVDVFREAIAEGHVATNPVTATRTAKSEVRRSRLTANEYVEI 188 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241 + + RLA + + +G R D CR + +N I+ KTG + + L Sbjct: 189 YHAAEPLPIWLRLAMDLAVVTGQRVGDLCRMKWSDINDNHLHIEQSKTGAKLAIPLTLTI 248 Query: 242 MKL---------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-----NKSAH 287 L ET + ++ S +F +G+ + H Sbjct: 249 DALNISLADTLQKCREASSSETIIASKHHDPLSPKTVSKYFTKARNASGLSFDGNPPTFH 308 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 +R + G K+ A Y R Sbjct: 309 ELR-SLSARLYRNQIGDKFAQRLLGHKSDLMAARYRDSRGR 348 >gi|256832498|ref|YP_003161225.1| tyrosine recombinase XerD [Jonesia denitrificans DSM 20603] gi|256686029|gb|ACV08922.1| tyrosine recombinase XerD [Jonesia denitrificans DSM 20603] Length = 310 Score = 129 bits (323), Expect = 8e-28, Method: Composition-based stats. Identities = 49/278 (17%), Positives = 93/278 (33%), Gaps = 32/278 (11%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYR---------KITTKHIRSGVESRKHTPSSAIQ 135 ++ N+ ++ + + + +R G + + SS + Sbjct: 21 RGVSPNTLAAYRRDLARYLDYLSHRELSLHSVTQSTIDDFLVALREGSLGQSLSQSSVSR 80 Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQ 191 L S+R L ++A + VA +P +SV PK + D+++ + G + Sbjct: 81 HLASLRGLHRYAEAEGVVAGDPAVSVRPPKLPQRLPDVLSTHDVERLLTTPPLDSAVGLR 140 Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKT-QKTGTIITVEL----------- 237 R EFL +G R S+ + + + K V + Sbjct: 141 DRALLEFLYATGARISEVVGLDRDDVIADDGFVVARVLGKGHKERLVPVGSCAYDALNAY 200 Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK----SAHGVRKFS 293 LA +G F+N ++++ ++ A A + S H +R Sbjct: 201 LVRARPELAGAGVGTPALFLNTRGRRLSRQSAFGVVRSAARLAAIPGAESVSPHTLRHCF 260 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTK-GADRIR 330 AT GA + G +V + YT AD +R Sbjct: 261 ATHMLSGGADIRVVQELLGHASVTTTQIYTHVSADALR 298 >gi|320195935|gb|EFW70559.1| Phage integrase [Escherichia coli WV_060327] Length = 303 Score = 129 bits (323), Expect = 8e-28, Method: Composition-based stats. Identities = 52/296 (17%), Positives = 100/296 (33%), Gaps = 21/296 (7%) Query: 51 LTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD 110 L+G+ + TL + Y + + + + S I RK D Sbjct: 2 LSGNRRESLIDRIKGADAITLHAWLDRYETILSERGIRPKTLLDYASKIRAIRRKLPDKP 61 Query: 111 YRKITTKHIRSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168 I+TK + + + + + +SA +++ +F+ A+ + +VA NP + K + Sbjct: 62 LADISTKEVAAMLNTYVAEGKAASAKLIRSTLVDVFREAIAEGHVATNPVTATRTAKSEV 121 Query: 169 EGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228 R E + + RLA + + +G R D C+ + +N I+ K Sbjct: 122 RRSRLTANEYVAIHHAAEPLPIWLRLAMDLAVVTGQRVGDLCKMKWSDINDNHLHIEQGK 181 Query: 229 TGTIITVELP-----------DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKA 277 TG + + L D K + G ET + + ++ S +F Sbjct: 182 TGAKLAIPLTLTIDALNISLADTLQKCREV--SGSETIIASTHHEPLSPKTVSKYFTKAR 239 Query: 278 TKAGV-----NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 +G+ + H +R + G K+ A Y R Sbjct: 240 NASGLSFDGDPPTFHELR-SLSARLYRNQIGDKFAQRLLGHKSDSMAARYRDSRGR 294 >gi|171057831|ref|YP_001790180.1| tyrosine recombinase XerD [Leptothrix cholodnii SP-6] gi|170775276|gb|ACB33415.1| tyrosine recombinase XerD [Leptothrix cholodnii SP-6] Length = 286 Score = 129 bits (323), Expect = 9e-28, Method: Composition-based stats. Identities = 46/274 (16%), Positives = 93/274 (33%), Gaps = 23/274 (8%) Query: 86 SLAVNSRISFESYFDQIIRKSGDFDYRKITTK---HIRSGVESR--KHTPSSAIQFLTSM 140 L+ N+ ++ + + H+ + +R + S+A + LT Sbjct: 9 GLSKNTLAAYRRDLQGLAAALPAQQSAGLLQASEAHLLGVITARHAQTRASTANRRLTVF 68 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAF 196 + ++WA+R+ + +P L + ++ ++ ++ + G + R F Sbjct: 69 KRFYRWALREALCSADPTLRLSAARQPKRLPGTLSEAQVEALLAAPALDTPLGLRDRAMF 128 Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------ELPDGFMKLLAM 247 E + +GLR S+ L +K G + + + Sbjct: 129 ELMYGAGLRVSELVSIRTLQLALVDQVLKVLGKGAKERLVPFGGEARHWIERYLTEARPA 188 Query: 248 TPIGK--ETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGAT 303 G+ + F+ M K A +AG+ S H +R AT + GA Sbjct: 189 LLAGRKCDALFVTVRCAGMTRQMAWNLVKKYARQAGITVPLSPHTLRHAFATHLLNHGAD 248 Query: 304 AHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 + G + + YT A R RL ++R Sbjct: 249 LRAVQLLLGHADISTTQIYTHVA-RERLKQLHAR 281 >gi|282164156|ref|YP_003356541.1| putative site-specific recombinase [Methanocella paludicola SANAE] gi|282156470|dbj|BAI61558.1| putative site-specific recombinase [Methanocella paludicola SANAE] Length = 272 Score = 129 bits (323), Expect = 9e-28, Method: Composition-based stats. Identities = 43/249 (17%), Positives = 91/249 (36%), Gaps = 20/249 (8%) Query: 88 AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE----SRKHTPSSAIQFLTSMRVL 143 + N+ + ++ ++ I + + + + ++ ++ Sbjct: 16 SPNTIKQYGLILHNF-QEFCSKPLDQVNRHEIIRYLNHLMFEQNRSKAYVSNIMSIIKSF 74 Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSG 203 + + V EY+ NP + K + T+++M+ + + L + L +G Sbjct: 75 YSFLVENEYITANPAKGISSVKIDKKAPIYLTQDEMRALIETALDP-RDNLIVKMLYATG 133 Query: 204 LRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLL----AMTPIGKETFFIN 258 +R S+ Q + + +IK K V +PD L A P G++ F +N Sbjct: 134 VRVSELVNIKKQDIDLDRNTIKVFGKGAKERIVLVPDVLKAQLETYCAGFPEGQKLFDLN 193 Query: 259 NDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTV 316 + + KA A +AG+NK + H +R AT G + G ++ Sbjct: 194 IRTVERD-------IKALAVRAGINKKVTPHKLRHSFATHMLQNGGNVVAIQKLLGHTSL 246 Query: 317 DQAETYTKG 325 + + YT Sbjct: 247 NTTQIYTHY 255 >gi|159044160|ref|YP_001532954.1| tyrosine recombinase [Dinoroseobacter shibae DFL 12] gi|157911920|gb|ABV93353.1| tyrosine recombinase [Dinoroseobacter shibae DFL 12] Length = 308 Score = 129 bits (323), Expect = 9e-28, Method: Composition-based stats. Identities = 55/291 (18%), Positives = 108/291 (37%), Gaps = 34/291 (11%) Query: 70 TLKWLISEYRKS-AHWGSLAVNSRISFESYFD----QIIRKSGDFD-YRKITTKHIRSGV 123 +L W I + + A + A N+R+++ I R+ DFD ++ + Sbjct: 2 SLHW-IDAFLDAQAAELNAAENTRLAYARDLMDFQGHIRRRGLDFDQVQRADIETYLIAC 60 Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 + ++ + L+++R L+++A + + NP L ++ P R + ++ D+ + Sbjct: 61 SDAGLSQATRARRLSAIRQLYRFAYEEGWRTDNPSLQIKGPGRAKRLPKTLSEADVDRLL 120 Query: 184 SFW-------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITV 235 + S+ + E L +GLR ++ C V ++ + + K G V Sbjct: 121 AAARNTGRSPSDRQRNACMLELLYATGLRVTELCGLPVAAVRGDPHLILVRGKGGKERMV 180 Query: 236 ELPD----GFMKLLAMTPIGKET----------FFINNDKQ--KMNATQFSIWFKAKATK 279 L L + ++T + + + + +F K A Sbjct: 181 PLSTPARTELQAWLKVRDAAEQTAISKGAAPSKYLFPSRGKLGHLTRHRFYALIKDIAVA 240 Query: 280 AGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 AGV+ + H +R AT GA + A G V E YT D Sbjct: 241 AGVDPSGVTPHTLRHAFATHLLARGADLMSIQALLGHADVATTEIYTHVLD 291 >gi|237727927|ref|ZP_04558408.1| site-specific tyrosine recombinase XerC [Citrobacter sp. 30_2] gi|226910376|gb|EEH96294.1| site-specific tyrosine recombinase XerC [Citrobacter sp. 30_2] Length = 300 Score = 129 bits (323), Expect = 9e-28, Method: Composition-based stats. Identities = 42/259 (16%), Positives = 87/259 (33%), Gaps = 19/259 (7%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITT------KHIRSGVESRKHTPSSAIQFLT 138 L+ + ++++ D II +G+ + + + P+S L+ Sbjct: 21 RQLSPITLLNYQRQLDAIIALAGETGLQSWQQCDAAMVRSFAVRSRRKGLGPASLALRLS 80 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQPRLA 195 ++R F W V Q + NP SV PK + +D+ + + R Sbjct: 81 ALRSFFDWLVNQGELKANPAKSVSAPKAPRHLPKNIDVDDVNRLLDIDLNDPLAVRDRAM 140 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMKLLAMT------ 248 E + +GLR S+ ++HL + K + + + + Sbjct: 141 LEVMYGAGLRLSELVGLDIKHLDLDTGEVWVMGKGSKERRLPIGRNAVAWIEHWLDLRGL 200 Query: 249 -PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAH 305 + F++ ++++A F K G+N H +R AT ++ Sbjct: 201 FGSDDDALFLSKLGKRISARNVQKRFAEWGIKQGLNSHVHPHKLRHSFATHMLESSGDLR 260 Query: 306 ELMATYGWKTVDQAETYTK 324 + G + + YT Sbjct: 261 GVQELLGHANLSTTQIYTH 279 >gi|57640712|ref|YP_183190.1| integrase/recombinase [Thermococcus kodakarensis KOD1] gi|73920475|sp|Q5JHA3|XERCL_PYRKO RecName: Full=Probable tyrosine recombinase xerC-like gi|57159036|dbj|BAD84966.1| integrase/recombinase [Thermococcus kodakarensis KOD1] Length = 282 Score = 129 bits (323), Expect = 9e-28, Method: Composition-based stats. Identities = 44/282 (15%), Positives = 99/282 (35%), Gaps = 18/282 (6%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133 +I E+ + ++ + Y + + GD + + + ++ S Sbjct: 7 VIEEFETYLDLEGKSPHTIRMYTYYVRRYLEWGGDLNAHS--ALRFLAHLRKNGYSNRSL 64 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-GSQP 192 + ++R F++ + + ++ PK + T+E++++ S + Sbjct: 65 NLVVQALRAYFRF---EGL--DDEAERLKPPKVPRSLPKALTREEVKRLLSVIPPTRKRD 119 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELP----DGFMKLLA 246 RL L +GLR S+ C + + ++ K V +P D L Sbjct: 120 RLIVLLLYGAGLRVSELCNLKKDDVDLDRGLIVVRGGKGAKDRVVPIPKYLADEIRAYLE 179 Query: 247 MTPIGKETFFINNDKQ---KMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGAT 303 E + + ++ K++ K KAGV + H +R AT + G Sbjct: 180 SRSDESEYLLVEDRRRRKDKLSTRNVWYLLKRYGQKAGVEVTPHKLRHSFATHLLEEGVD 239 Query: 304 AHELMATYGWKTVDQAETYTK-GADRIRLGIKNSRRISSVVD 344 + G + + YTK + +R + ++ I ++ Sbjct: 240 IRAIQELLGHSNLSTTQIYTKVTVEHLRKAQEKAKLIEKLMG 281 >gi|303241363|ref|ZP_07327867.1| integrase family protein [Acetivibrio cellulolyticus CD2] gi|302591096|gb|EFL60840.1| integrase family protein [Acetivibrio cellulolyticus CD2] Length = 377 Score = 129 bits (323), Expect = 9e-28, Method: Composition-based stats. Identities = 62/308 (20%), Positives = 113/308 (36%), Gaps = 37/308 (12%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH 128 T+ I+ + K+ L + S+ES II GD +K+ TK I+ R Sbjct: 69 TVSEWINYWLKTYKKNKLKPKTYDSYESLSRITIIPHIGDLPMQKLKTKDIQEMYNKRYE 128 Query: 129 TPSSAIQFLTS---MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 S+ ++ A+ + Y++ NP VE P+ + I+ ++ ED + F+ Sbjct: 129 EGYSSNSIHKVNIVLKSALNKAITEGYISKNPANFVELPEIIKKDIKAFSAEDQKAFEQA 188 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ---------------------NNIFSI 224 + S +A+ L +GLR S+ ++ + I Sbjct: 189 AKDYSH-YIAYIVNLDTGLRMSELLALTWDNIDFDKAELTVNKNLVSVRDREKEDGFKLI 247 Query: 225 KTQKTG----TIITVELPDGFMKLLAMTPIGKET----FFINNDKQKMNATQFSIWFKAK 276 + T +I T+ L + LL I ++ F + + +S F+ Sbjct: 248 VQENTSKTKYSIRTIPLTKRCISLLRKLKIKQQANSNIVFCSKLGTHLTPRNYSRTFQRI 307 Query: 277 ATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGA-DRIRLGI 333 KA V + H +R AT +AG + G +V +TYT + + I Sbjct: 308 VKKAKVEMCNVHTMRHTFATRLFEAGVPPKTISELLGHASVSFTLDTYTHVMPNTKKQAI 367 Query: 334 KNSRRISS 341 + S+ Sbjct: 368 DMLEQCSN 375 >gi|317405888|gb|EFV86170.1| integrase/recombinase [Achromobacter xylosoxidans C54] Length = 327 Score = 129 bits (323), Expect = 1e-27, Method: Composition-based stats. Identities = 50/325 (15%), Positives = 97/325 (29%), Gaps = 51/325 (15%) Query: 59 EYINSPRKKPTTLKWLISE-YRKSAHWGSLAVNSRISFESYF--------------DQII 103 +P + I + + L+ N+ ++ ++ Sbjct: 2 PDSRAPLASQADIDAFIDAVWLEDG----LSANTLAAYRRDLTGFARWLEDPEAYAREMA 57 Query: 104 RKSGDFDYRKITTKHIRSGVESRKH--------------TPSSAIQFLTSMRVLFKWAVR 149 + GD + ++A + L ++R + WA+R Sbjct: 58 DRYGDAASAHALPAGPAKALAEAGKADIEAWFAFRHEETRATTANRRLAALRRFYAWALR 117 Query: 150 QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAFEFLLYSGLR 205 + A +PCL++ K+ + +++ + G + R E L +GLR Sbjct: 118 EHRAAHDPCLTLVAAKQPPRLPKTLSEQQVDALLRAPDLNEPRGLRDRAMLEMLYATGLR 177 Query: 206 CSDSCRAGVQHLQNNIFSIKT--QKTGTIITVELPDGFMKLLA----------MTPIGKE 253 S+ + N ++ K G V L + + Sbjct: 178 VSELVGVRALDVSLNEGVVRVVLGKGGKDRLVPLGAEAAHWIDQYMKTARPELAAGRVSD 237 Query: 254 TFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATY 311 FI + M+ F K A AGV+ S H +R AT + GA + Sbjct: 238 ALFITGRAEAMSRQAFWQLVKKYAVLAGVHAPLSPHVLRHAFATHLLNHGADLRVVQMLL 297 Query: 312 GWKTVDQAETYTKGADRIRLGIKNS 336 G + + YT A + + Sbjct: 298 GHADISTTQIYTHVARERLKALHAA 322 >gi|237746680|ref|ZP_04577160.1| site specific integrase/recombinase [Oxalobacter formigenes HOxBLS] gi|229378031|gb|EEO28122.1| site specific integrase/recombinase [Oxalobacter formigenes HOxBLS] Length = 326 Score = 129 bits (323), Expect = 1e-27, Method: Composition-based stats. Identities = 52/290 (17%), Positives = 100/290 (34%), Gaps = 42/290 (14%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFLTSMR 141 L+ N+ S+ Q+ +G+ ++++ IR V +P S + L++ R Sbjct: 22 RKLSGNTLDSYRRDLAQLTEMAGETGLNRLSSTDIRRFVSRLHASGLSPRSIGRKLSAWR 81 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP--------- 192 F+W V + ++ NP + PK+ + + +D + S + Sbjct: 82 GFFQWLVDEALLSTNPAEDIHAPKKSKPLPKALSVDDAVRLVSSGPADTNASSAGQAAAL 141 Query: 193 --RLAFEFLLYSGLRCSDSCRAGVQ------HLQNNIFSIK------TQKTGTIITVELP 238 R FE L SGLR S+ +Q ++ + T K V Sbjct: 142 CDRAMFELLYSSGLRVSELTGLDIQAVRQAGYVSAGWIDLNEKEVTVTGKGNKTRIVPAG 201 Query: 239 DGFMKLLA-------------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--N 283 D + + P F+N+ ++++ Q + KA A + G+ N Sbjct: 202 DAAITAVRNWLAARDNLVHPEALPRDAFALFVNSRGKRISPRQVQLRLKAHAKRLGLPVN 261 Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 H +R A+ + + G ++ + YT D L Sbjct: 262 VHPHVLRHSFASHILQSSGDLRAVQEMLGHSSIASTQIYT-ALDFQHLAA 310 >gi|323343426|ref|ZP_08083653.1| integrase [Prevotella oralis ATCC 33269] gi|323095245|gb|EFZ37819.1| integrase [Prevotella oralis ATCC 33269] Length = 407 Score = 129 bits (323), Expect = 1e-27, Method: Composition-based stats. Identities = 55/360 (15%), Positives = 120/360 (33%), Gaps = 50/360 (13%) Query: 16 TRHGKIIYYFRKG--HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73 +G + Y ++ + + + Y+ A + +R+ + ++ Sbjct: 41 DENGNPVLYETGKMMGKPKVHIKHNRRKENLQLYLIAKPRTPAERQQNKETLELAAKIRA 100 Query: 74 LISE--------YR----KSAHWGSLAVN-----SRISFE-------SYFDQIIRKSGDF 109 + YR ++ ++ ++ + D + + + Sbjct: 101 EREQEFKESMLGYRLKKDRNINFLDYYQAYIDSYTKKDLRMIKIALNRFKDFLKEQYPLY 160 Query: 110 DYRKITTKHIRSGVESR------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER 163 ++ + +E + A + + ++A+ E + +PC V Sbjct: 161 EFSIKPDLITKDMMEQFVEYLQSRSVGEGAKSIYQRFKKVVRYAIDHEVMLKDPCKGV-V 219 Query: 164 PKRKTEGIR--PWTKEDMQQFKSFWSEGSQP--RLAFEFLLYSGLRCSDSCRAGVQHLQ- 218 K + +R + +++Q E P R AF F LY GLR D +++ Sbjct: 220 CKVDEQILRKDVLSMDEIQTLIQCHYENENPNVRRAFIFCLYCGLRFCDVKDLTYKNIDY 279 Query: 219 -NNIFSIKTQKTG-----TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIW 272 N + + KT + + + L DG + L+ P + N + Sbjct: 280 TNRLLKFEQNKTKGHSAHSGVVIPLNDGLLSLIGDAPDDLNSSIFNLP----SYESCCKS 335 Query: 273 FKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 K +AG+NK S H R A + GA + + G + E YT+ D+++ Sbjct: 336 VKRWVKRAGINKHISWHCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYTRAVDKLK 395 >gi|197287151|ref|YP_002153023.1| site-specific tyrosine recombinase XerC [Proteus mirabilis HI4320] gi|227357156|ref|ZP_03841525.1| tyrosine recombinase [Proteus mirabilis ATCC 29906] gi|34222763|sp|O31207|XERC_PROMI RecName: Full=Tyrosine recombinase xerC gi|2645802|gb|AAB87500.1| site-specific recombinase [Proteus mirabilis] gi|194684638|emb|CAR46553.1| tyrosine recombinase [Proteus mirabilis HI4320] gi|227162688|gb|EEI47655.1| tyrosine recombinase [Proteus mirabilis ATCC 29906] Length = 307 Score = 129 bits (323), Expect = 1e-27, Method: Composition-based stats. Identities = 43/279 (15%), Positives = 92/279 (32%), Gaps = 21/279 (7%) Query: 67 KPTTLKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRK---ITTKHIRSG 122 P TL I + L+ + +++ I + + + ++H+R Sbjct: 7 VPETLSLAIDSFLSYIEVERRLSPVTVENYQRQLMTIAQMMVAIKINQWSLLESQHVRML 66 Query: 123 V---ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179 + P+S +++R W V Q +A+NP V PK + +++ Sbjct: 67 LAKSHRSGLQPASLALRFSALRSFLDWQVSQGMLAVNPAKGVRTPKSGRHLPKNMDVDEV 126 Query: 180 QQFKS---FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITV 235 Q + + R E + +GLR S+ + + ++ K V Sbjct: 127 SQLMNIDLKDPLSVRDRTMLEVMYGAGLRLSELTNLNINDIDLQEGEVRVLGKGSKERKV 186 Query: 236 ELPDGFMKLLAM--------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKS 285 L ++ L +P F ++++ F+ K G+ + + Sbjct: 187 PLGRKAVEWLQHWFAMRELYSPEDTAVFISTKSGKRLSVRSVQKRFELWGVKQGLSSHVN 246 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R AT ++ + G + + YT Sbjct: 247 PHKLRHSFATHLLESSGDLRAVQELLGHANLSTTQVYTH 285 >gi|215485788|ref|YP_002328219.1| predicted integrase [Escherichia coli O127:H6 str. E2348/69] gi|260854001|ref|YP_003227892.1| putative integrase [Escherichia coli O26:H11 str. 11368] gi|215263860|emb|CAS08198.1| predicted integrase [Escherichia coli O127:H6 str. E2348/69] gi|257752650|dbj|BAI24152.1| putative integrase [Escherichia coli O26:H11 str. 11368] gi|323155048|gb|EFZ41237.1| integrase [Escherichia coli EPECa14] Length = 356 Score = 129 bits (323), Expect = 1e-27, Method: Composition-based stats. Identities = 61/343 (17%), Positives = 113/343 (32%), Gaps = 25/343 (7%) Query: 7 LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMS---ALTGSTPKREYINS 63 LPP + R+ Y G+ L A + +G K Sbjct: 12 LPPNLY---IRNNGYYCYRDPRTGKEFGLGRDRRIAITEAIQANIELFSGHKHKPLTARI 68 Query: 64 PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123 TL + Y K + + I++ S I R D ITTK I + + Sbjct: 69 NSDNSVTLHSWLDRYEKILASRGIKQKTLINYMSKIKAIRRGLPDAPLEDITTKEIAAML 128 Query: 124 ESRKH--TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 +SA +++ F+ A+ + ++ NP + K + R E ++ Sbjct: 129 SGYIDEGKAASAKLIRSTLSDAFREAIAEGHITTNPVAATRAAKSEVRRSRLTADEYLKI 188 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE----- 236 +++ S RLA E + +G R D C + + ++ KTG I + Sbjct: 189 YQAAESSPCWLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAIPTTLHV 248 Query: 237 ----LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-----NKSAH 287 + +G ET + ++ +++ S +F +G+ + H Sbjct: 249 DALGISMKETLDKCKEILGGETIIASTHREPLSSGTVSRYFMRARKASGLSFEGDPPTFH 308 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 +R + + + G K+ A Y DR R Sbjct: 309 ELR-SLSARLYEKQISDKFAQHLLGHKSDTMASQY--RDDRGR 348 >gi|125973246|ref|YP_001037156.1| site-specific tyrosine recombinase XerC [Clostridium thermocellum ATCC 27405] gi|256003724|ref|ZP_05428712.1| integrase family protein [Clostridium thermocellum DSM 2360] gi|281417446|ref|ZP_06248466.1| integrase family protein [Clostridium thermocellum JW20] gi|125713471|gb|ABN51963.1| phage integrase [Clostridium thermocellum ATCC 27405] gi|255992285|gb|EEU02379.1| integrase family protein [Clostridium thermocellum DSM 2360] gi|281408848|gb|EFB39106.1| integrase family protein [Clostridium thermocellum JW20] gi|316940523|gb|ADU74557.1| integrase family protein [Clostridium thermocellum DSM 1313] Length = 330 Score = 129 bits (323), Expect = 1e-27, Method: Composition-based stats. Identities = 60/272 (22%), Positives = 105/272 (38%), Gaps = 21/272 (7%) Query: 96 ESYFDQIIRKSGDFDY-RKITTKHIRSGV----ESRKHTPSSAIQFLTSMRVLFKWAV-R 149 + FD I K D D +KIT I S + R +T SS + + S+R F + + Sbjct: 55 KKDFDSIDIKDMDIDVIKKITLSDIYSFMSFLSRERDNTASSRARKVASIRSFFNYLTNK 114 Query: 150 QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR--LAFEFLLYSGLRCS 207 + + NP +E PK R E+ ++ + R L GLR S Sbjct: 115 AKLLEQNPAAELESPKIMKRLPRYLNIEESKRLLGSIDGEHKERDFAIITLFLNCGLRLS 174 Query: 208 DSCRAGVQHLQNNIFSIKTQKTGTIITVELP----DGFMKLLAMTPI----GKETFFINN 259 + + +++N++ ++ K T+ L L + P+ K F+++ Sbjct: 175 ELVNINLSNIKNDVLTV-VGKGNKERTIYLNAACKKALDAYLKVRPVDGVKDKNALFLSS 233 Query: 260 DKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAG-ATAHELMATYGWKT 315 KQ+++ K AG++ S H +R +AT+ G L G ++ Sbjct: 234 RKQRISNKTVQHIVKKYIKAAGLDPERYSTHKLRHTAATLMYKHGNVDIRALQEILGHES 293 Query: 316 VDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347 + E YT + S +S+ VD D Sbjct: 294 IATTEIYTHVDSQQLKNAVESNPLSTYVDEHD 325 >gi|193066330|ref|ZP_03047380.1| integrase [Escherichia coli E22] gi|192926037|gb|EDV80681.1| integrase [Escherichia coli E22] Length = 357 Score = 129 bits (323), Expect = 1e-27, Method: Composition-based stats. Identities = 61/341 (17%), Positives = 112/341 (32%), Gaps = 23/341 (6%) Query: 7 LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHE---STFIPAYMSALTGSTPKREYINS 63 LPP + R+ Y G+ L + I A + L+ S K Sbjct: 12 LPPNLY---IRNNGYYCYRDPRTGKEFGLGRDRRIAITEAIQANIELLSDSGRKSLIDRI 68 Query: 64 PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123 TL + Y + + + + + S I RK D I+TK + + + Sbjct: 69 KGGDAITLHVWLDRYERILTERGIRPKTLLDYASKIRAIRRKLPDKPLTDISTKEVAAML 128 Query: 124 ESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 + + +SA +++ +F+ A+ + +VA NP + K + R E ++ Sbjct: 129 NTYVAEGKAASAKLIRSTLVDVFREAIAEGHVATNPVTATRTAKSEVRRSRLTANEYVEI 188 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241 + + RLA + + +G R D CR + +N I+ KTG + + L Sbjct: 189 YHAAEPLPIWLRLAMDLAVVTGQRVGDLCRMKWSDINDNHLHIEQSKTGAKLAIPLTLTI 248 Query: 242 MKL---------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-----NKSAH 287 L ET + ++ S +F +G+ + H Sbjct: 249 DALNISLADTLQKCREASSSETIIASKHHDPLSPKTVSKYFTKARNASGLSFDGNPPTFH 308 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 +R + G K+ A Y R Sbjct: 309 ELR-SLSARLYRNQIGDKFAQRLLGHKSDLMAARYRDSRGR 348 >gi|258405471|ref|YP_003198213.1| tyrosine recombinase XerD [Desulfohalobium retbaense DSM 5692] gi|257797698|gb|ACV68635.1| tyrosine recombinase XerD [Desulfohalobium retbaense DSM 5692] Length = 306 Score = 128 bits (322), Expect = 1e-27, Method: Composition-based stats. Identities = 45/226 (19%), Positives = 81/226 (35%), Gaps = 16/226 (7%) Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 ++SR T + + L+S+R F++ +P V+ PK + ++MQ Sbjct: 69 LKSRGLTNRTIARHLSSLRGFFQFLQTSNRRVDDPTAHVDGPKLTRQLPEFLDVQEMQGL 128 Query: 183 KSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVEL 237 + G+ + R E L +GLR S+ R + + ++ K V L Sbjct: 129 LAQPDTGTKLGFRDRTILELLYAAGLRVSEVIRLQALDIDSQTGVVRVWGKGAKERLVPL 188 Query: 238 PDGFMKLLAM--------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AH 287 + + + F+N + ++ K A AG+ +S H Sbjct: 189 HPAALDYVRTYVQAWRPQFAPQHKVLFLNRSGRCLSRQAVWKNVKRYAVAAGIRRSISPH 248 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLG 332 +R AT + GA + G + E YT A R+R Sbjct: 249 TIRHSFATHLLEGGADLRTVQLLLGHADISATEIYTHVQAGRLRAA 294 >gi|189184504|ref|YP_001938289.1| putative integrase [Orientia tsutsugamushi str. Ikeda] gi|189184591|ref|YP_001938376.1| putative integrase [Orientia tsutsugamushi str. Ikeda] gi|189181275|dbj|BAG41055.1| putative integrase [Orientia tsutsugamushi str. Ikeda] gi|189181362|dbj|BAG41142.1| putative integrase [Orientia tsutsugamushi str. Ikeda] Length = 399 Score = 128 bits (322), Expect = 1e-27, Method: Composition-based stats. Identities = 48/202 (23%), Positives = 87/202 (43%), Gaps = 10/202 (4%) Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 ++A QFL ++ +F A++ E + NP L +++ K + R + ++M +F + Sbjct: 175 ATANQFLITLSSIFNKAIKWELIDRNPTLKIDKHKMQARERR-LSYDEMSKFLHVLCGEA 233 Query: 191 QP--RLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLA 246 P R LY+G R ++ ++ I+ I K G + L D +++L Sbjct: 234 TPLIRDFALLALYTGARKTNVLEMEWDNIDFVRKIWHIPKTKNGKAQNIPLTDEIIEILQ 293 Query: 247 MTP-IGKETFFINNDKQKMN--ATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGA 302 K + ++ DK K + W+K KAG+ N H +R+ A+ AD GA Sbjct: 294 ARKLTSKSKWVLSTDKSKSGHLEYPYRGWYK-ICKKAGIKNLRIHDLRRTFASCMADEGA 352 Query: 303 TAHELMATYGWKTVDQAETYTK 324 + + A + YTK Sbjct: 353 GQYIISAALNHSDIKSTSIYTK 374 >gi|222529381|ref|YP_002573263.1| site-specific tyrosine recombinase XerC [Caldicellulosiruptor bescii DSM 6725] gi|222456228|gb|ACM60490.1| integrase family protein [Caldicellulosiruptor bescii DSM 6725] Length = 328 Score = 128 bits (322), Expect = 1e-27, Method: Composition-based stats. Identities = 52/284 (18%), Positives = 104/284 (36%), Gaps = 22/284 (7%) Query: 66 KKPTTLKWL---ISEYRKSAHWGSLAVNSRISFESYFDQI-IRKSGDFDYRKITTKHIRS 121 K P T+K + + + L + S+I + I + + +T ++ Sbjct: 23 KSPNTIKEYYYDLRTFLRYLKAKDLNMLSQIEKIEDLENIDVSNFEIEKLKTLTLSNLYE 82 Query: 122 GVE----SRKHTPSSAIQFLTSMRVLFKWAV-RQEYVAINPCLSVERPKRKTEGIRPWTK 176 + P + + + S+R FK+ + + + NP +E PK R T Sbjct: 83 YFSFLATRFNNGPYARARKVASIRSFFKYLYSKAKLIPDNPAKDLESPKLGKRNPRYLTL 142 Query: 177 EDMQQFKSFWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT 234 + ++ S ++ R L GLR S+ + +++++ I + I Sbjct: 143 NESKKLLSAIDGENKERDFAIITLFLNCGLRLSELVNINLSDIKDDMLRIVGKGNKERII 202 Query: 235 V---ELPDGFMKLLAMTPI----GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--- 284 D L + P K+ F++ K++++ + AG+N+ Sbjct: 203 YLNKACKDAIENYLKVRPTEGVKDKDALFLSERKKRISRRTVQYIVEKYVKMAGINQKKI 262 Query: 285 SAHGVRKFSATISADAGA-TAHELMATYGWKTVDQAETYTKGAD 327 SAH +R +AT+ G L G +++ E YT D Sbjct: 263 SAHKLRHTAATLMYRHGKVDIRSLQTILGHQSISTTEIYTHVND 306 >gi|239628231|ref|ZP_04671262.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239518377|gb|EEQ58243.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 294 Score = 128 bits (322), Expect = 1e-27, Method: Composition-based stats. Identities = 43/272 (15%), Positives = 89/272 (32%), Gaps = 24/272 (8%) Query: 76 SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK------HIRSGVESRKHT 129 Y + + N+ IS++ +Q+ + ++ +E Sbjct: 9 VSYLRDVR--QTSKNTEISYQRDLNQLAAFLAEKGITEVEKVTRTSLNSYILYLEKEGKA 66 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW--- 186 ++ + L S++ F + R+ + +P ++ PK + + + ++ Sbjct: 67 TTTISRELASIKAFFSYLFREGMIRRDPSELLKAPKIEKKAPVILSVNEVNSLLDQPGTS 126 Query: 187 -SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE--------L 237 + + + E L +G+R S+ + L I I + V + Sbjct: 127 SPKEIRDKAMMELLYATGIRVSELIGLELSDLNMQIGYITCRDGLKERMVPFGKTASQAM 186 Query: 238 PDGFMKLLAMTPIGKET--FFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFS 293 + GKE+ F N + M+ F K KAG+ + + H +R Sbjct: 187 SIYLERGRRELLKGKESPWLFTNCSGKAMSRQGFWKIIKYYGEKAGIQADITPHTLRHSF 246 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKG 325 A GA H + A G A+ Y Sbjct: 247 AAHLIRGGADVHAVQAMLGHSDSTTAQMYAAY 278 >gi|170730333|ref|YP_001775766.1| phage-related integrase [Xylella fastidiosa M12] gi|167965126|gb|ACA12136.1| phage-related integrase [Xylella fastidiosa M12] Length = 339 Score = 128 bits (322), Expect = 1e-27, Method: Composition-based stats. Identities = 62/333 (18%), Positives = 113/333 (33%), Gaps = 28/333 (8%) Query: 7 LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66 +P F + + + G + YY+ G R P Y A+ + E+ Sbjct: 11 IPRFRVRPQ-KSGVVYYYYDHGGKPRKETPLG------RDYGLAI-KRWAELEHAQITPA 62 Query: 67 KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVE 124 T + + YR + A +++ Y + +++ D + I IR ++ Sbjct: 63 IAVTFRHVAERYRAEVI-PTKARSTQQMHHIYLNYLLQFFDDPPAPFEAIRPVDIRKYLD 121 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVA-INPCLSVERPKRKTEGIRPWTKEDMQQFK 183 R SA + ++ ++ WA + NPC + R K + D ++ Sbjct: 122 WRPFKV-SANREISVFSHIWNWARSKGITDLANPCAGIRRNKESGRDVYI----DDATYR 176 Query: 184 SFWSEGSQP-RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242 + + Q R A + +G R SD +H+ N I KTG + + + Sbjct: 177 AVYQAADQTLRDAMDLAYLTGQRVSDVLSMDERHIVNGALEICQAKTGAKLAIAITGELA 236 Query: 243 KLLAMTPIGKE-------TFFINNDKQKMNATQFSIWFKAKATKAGVNKSA---HGVRKF 292 L+ K ++ + FK AG+ K A +R Sbjct: 237 VLIKRIFDHKRGLKLRSTRLIVDEKGFGLGCMALRYRFKKARAAAGIAKQAFQFRDLRAK 296 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKG 325 +AT AD + A G +V E Y + Sbjct: 297 AATDKADLAGDIRQAQAQLGHTSVVMTEHYVRK 329 >gi|324009915|gb|EGB79134.1| phage integrase, SAM-like domain protein [Escherichia coli MS 57-2] Length = 357 Score = 128 bits (322), Expect = 1e-27, Method: Composition-based stats. Identities = 61/341 (17%), Positives = 110/341 (32%), Gaps = 23/341 (6%) Query: 7 LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMS---ALTGSTPKREYINS 63 LPP + R+ Y G+ L A + L+ S K Sbjct: 12 LPPNLY---IRNNGYYCYRDPRTGKEFGLGRDRRIAITEAIQANIELLSDSGRKSLIDRI 68 Query: 64 PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123 TL + Y + + + + + S I RK D I+TK + + + Sbjct: 69 KGGDAITLHVWLDRYERILTERGIRPKTLLDYASKIRAIRRKLPDKPLTDISTKEVAAML 128 Query: 124 ESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 + + +SA +++ +F+ A+ + +VA NP + K + R E + Sbjct: 129 NTYVAEGKAASAKLIRSTLVDVFREAIAEGHVATNPVTATRTAKSEVRRSRLTANEYVAI 188 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241 + + RLA + + +G R D CR + +N I+ KTG + + L Sbjct: 189 YHAAEPLPIWLRLAMDLAVVTGQRVGDLCRMKWSDINDNHLHIEQSKTGAKLAIPLTLTI 248 Query: 242 MKL---------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-----NKSAH 287 L G ET + ++ S +F +G+ + H Sbjct: 249 DALNISLADTLQKCREASGSETIIASKHHDPLSPKTVSKYFTKARNASGLSFDGDPPTFH 308 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 +R + G K+ A Y R Sbjct: 309 ELR-SLSARLYRNQIGDKFAQRLLGHKSYSMAARYRDSRGR 348 >gi|138559|sp|P27078|VINT_BP434 RecName: Full=Integrase gi|215353|gb|AAA67900.1| integrase [Phage 434] Length = 356 Score = 128 bits (322), Expect = 1e-27, Method: Composition-based stats. Identities = 62/343 (18%), Positives = 115/343 (33%), Gaps = 25/343 (7%) Query: 7 LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHE---STFIPAYMSALTGSTPKREYINS 63 LPP + R+ Y G+ L + I A + +G K Sbjct: 12 LPPNLY---IRNNGYYCYRDPRTGKEFGLGRDRRIAITEAIQANIELFSGHKHKPLTARI 68 Query: 64 PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123 TL + Y K + + I++ S I R D ITTK I + + Sbjct: 69 NSDNSVTLHSWLDRYEKILASRGIKQKTLINYMSKIKAIRRGLPDAPLEDITTKEIAAML 128 Query: 124 ESRKH--TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 +SA +++ F+ A+ + ++ NP + K + R E ++ Sbjct: 129 SGYIDEGKAASAKLIRSTLSDAFREAIAEGHITTNPVAATRAAKSEVRRSRLTADEYLKI 188 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE----- 236 +++ S RLA E + +G R D C + + ++ KTG I + Sbjct: 189 YQAAESSPCWLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAIPTTLHV 248 Query: 237 ----LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-----NKSAH 287 + +G ET + ++ +++ S +F +G+ + H Sbjct: 249 DALGISMKETLDKCKEILGGETIIASTRREPLSSGTVSRYFMRARKASGLSFEGDPPTFH 308 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 +R + + + G K+ A Y DR R Sbjct: 309 ELR-SLSARLYEKQISDKFAQHLLGHKSDTMASQY--RDDRGR 348 >gi|269123216|ref|YP_003305793.1| integrase family protein [Streptobacillus moniliformis DSM 12112] gi|268314542|gb|ACZ00916.1| integrase family protein [Streptobacillus moniliformis DSM 12112] Length = 299 Score = 128 bits (322), Expect = 1e-27, Method: Composition-based stats. Identities = 48/255 (18%), Positives = 93/255 (36%), Gaps = 20/255 (7%) Query: 90 NSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE----SRKHTPSSAIQFLTSMRVLFK 145 + + E + + + G D+ K+ RS + + S + L+++R FK Sbjct: 25 SYKKDLEQFIEYLKNNEGIEDFNKVEIFTFRSFIAYLNVELQVNKRSINRKLSAIRTFFK 84 Query: 146 WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRLAFEFLLY 201 + + +Y+ N + + PK + TKED+ + +S G + R E L Sbjct: 85 YLLENDYIIENKAVYISTPKFEKPLPNFLTKEDIDKLRSVIKLEKITGLRDRAIIELLYS 144 Query: 202 SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-ELPDGFMKLLAMTPIGK-------- 252 SGLR + + ++ G + + K ++ K Sbjct: 145 SGLRSMELLDLTEYTIDLKNMEVRVIGKGNKERISFFSNNAQKYISEYIERKKEEYKNYN 204 Query: 253 -ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMA 309 + F+N D K+++ + KAG+NK + H R AT + G + Sbjct: 205 KDAIFVNKDGNKLDSRSLRRLITKYSIKAGINKEVTPHIFRHSFATELLNQGVDIRFVQE 264 Query: 310 TYGWKTVDQAETYTK 324 G ++ + YT Sbjct: 265 LLGHSSIATTQFYTH 279 >gi|328952276|ref|YP_004369610.1| integrase family protein [Desulfobacca acetoxidans DSM 11109] gi|328452600|gb|AEB08429.1| integrase family protein [Desulfobacca acetoxidans DSM 11109] Length = 362 Score = 128 bits (322), Expect = 1e-27, Method: Composition-based stats. Identities = 59/331 (17%), Positives = 111/331 (33%), Gaps = 27/331 (8%) Query: 19 GKIIY---YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75 G+I + Y + RR R+ P+++ Y + R P K TT K L Sbjct: 33 GRIWWIEYYDHERRLRRERI-GPNKAAAEQRYREVRSLLAEGRFVRKCPDAK-TTFKTLA 90 Query: 76 SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--------- 126 Y + SR E +++ GD + IT + + R Sbjct: 91 DWYLNLPEVKAKRSYSRD--ERSLKKLLPVFGDKLLKDITPAMVEKYRQDRLSELSYRGN 148 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 P++ + + ++++F A+ E P ++ K R ++ + + Sbjct: 149 PTKPATVNREMALLKIIFNKAIANEKAEKTPVKGLKMLKENNARDRVLSEAEYLNLINQC 208 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQ--KTGTIITVELPDGFM 242 +P + ++G+R + + +++ + KT + L M Sbjct: 209 PGYLRP--IVKVAYHTGMRQGEILSLTWGQIDLKEGFITLRPEDTKTNEARLIPLNSELM 266 Query: 243 KLLAMTPIGKETF-FINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADA 300 L P G + + F++ KA + + + H +R T A Sbjct: 267 DLFKGIPRGLPQLRVFLKNGNPIT--SIRESFQSACRKANITDFTFHDLRHTFTTNMRRA 324 Query: 301 GATAHELMATYGWKTVDQAETY-TKGADRIR 330 G +MA G KT Y T G D +R Sbjct: 325 GIHDSVIMAITGHKTTAMFLRYNTVGRDELR 355 >gi|189184607|ref|YP_001938392.1| putative integrase [Orientia tsutsugamushi str. Ikeda] gi|189181378|dbj|BAG41158.1| putative integrase [Orientia tsutsugamushi str. Ikeda] Length = 399 Score = 128 bits (322), Expect = 1e-27, Method: Composition-based stats. Identities = 48/202 (23%), Positives = 87/202 (43%), Gaps = 10/202 (4%) Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 ++A QFL ++ +F A++ E + NP L +++ K + R + ++M +F + Sbjct: 175 ATANQFLITLSSIFNKAIKWELIDRNPTLKIDKHKMQARERR-LSYDEMSKFLHVLCGEA 233 Query: 191 QP--RLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLA 246 P R LY+G R ++ ++ I+ I K G + L D +++L Sbjct: 234 TPLIRDFALLALYTGARKTNVLEMEWDNIDFARKIWHIPKTKNGKAQNIPLTDEIIEILQ 293 Query: 247 MTP-IGKETFFINNDKQKMN--ATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGA 302 K + ++ DK K + W+K KAG+ N H +R+ A+ AD GA Sbjct: 294 ARKLTSKSKWVLSTDKSKSGHLEYPYRGWYK-ICKKAGIKNLRIHDLRRTFASCMADEGA 352 Query: 303 TAHELMATYGWKTVDQAETYTK 324 + + A + YTK Sbjct: 353 GQYIISAALNHSDIKSTSIYTK 374 >gi|227536514|ref|ZP_03966563.1| integrase/recombinase XerD [Sphingobacterium spiritivorum ATCC 33300] gi|227243591|gb|EEI93606.1| integrase/recombinase XerD [Sphingobacterium spiritivorum ATCC 33300] Length = 297 Score = 128 bits (322), Expect = 1e-27, Method: Composition-based stats. Identities = 46/269 (17%), Positives = 98/269 (36%), Gaps = 27/269 (10%) Query: 83 HWGSLAVN-SRISFESYFDQIIR-----KSGDFDYRKITTKHIRS---GVESRKHTPSSA 133 + L + S E+Y + I + ++++ +I+ + + +P S Sbjct: 12 RYLQLERGLTSNSIEAYLNDIAKLEVYCTDQQLTLKQLSVHNIQEFLVWINTFDISPYSQ 71 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----G 189 + ++ ++ F + + + NP ++ P+ + E++ Q G Sbjct: 72 SRLISGLKAFFGYLQLEGLITKNPVELIQSPRLSRKIPVVLNIEEIDQLIGALDLSTADG 131 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFMKLLAM- 247 + + E L GLR S+ + +L +I IK + G + + +K L + Sbjct: 132 MRNKAILEILYGCGLRVSELVNLRISNLFLHIDFIKVEGKGNKERLIPIGQHAIKYLNIY 191 Query: 248 -------TPIGK---ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSAT 295 P+ + F+N ++ + K A K G+ K S H R A+ Sbjct: 192 LNEIRVHQPVKAGFEDYVFLNKRGTSLSRVMIFLIIKDLAAKTGLQKEISPHTFRHSFAS 251 Query: 296 ISADAGATAHELMATYGWKTVDQAETYTK 324 + GA + G +++ E YT Sbjct: 252 HLVEGGADLRAVQDMLGHESITTTEIYTH 280 >gi|323967241|gb|EGB62665.1| bacteriophage lambda integrase domain-containing protein [Escherichia coli M863] Length = 357 Score = 128 bits (322), Expect = 1e-27, Method: Composition-based stats. Identities = 60/341 (17%), Positives = 111/341 (32%), Gaps = 23/341 (6%) Query: 7 LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHE---STFIPAYMSALTGSTPKREYINS 63 LPP + R+ Y G+ L S I A + L+ + + Sbjct: 12 LPPNLY---IRNNGYYCYRDPRTGKEFGLGRDRRIAVSEAIQANIELLSENRRESLIDRI 68 Query: 64 PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123 TL + Y + + + + S I RK D I+TK + + + Sbjct: 69 KGADVITLHVWLDRYETILSERGIRPKTLLDYASKIRAIRRKLPDKPLADISTKEVATML 128 Query: 124 ESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 + + +SA +++ +F+ A+ + +VA NP + K + R E ++ Sbjct: 129 NTYVAEGKAASAKLIRSTLVDVFREAIAEGHVATNPVTATRTAKSEVRRSRLTANEYVEI 188 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241 + + RLA + + +G R D CR + +N I+ KTG + + L Sbjct: 189 YHAAEPLPIWLRLAMDLAVVTGQRVGDLCRMKWSDINDNHLHIEQSKTGAKLAIPLTLTI 248 Query: 242 MKL---------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-----NKSAH 287 L ET + ++ S +F +G+ + H Sbjct: 249 DALNISLADTLQKCREASSSETIIASKHHDPLSPKTVSKYFTKARNASGLSFDGDPPTFH 308 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 +R + G K+ A Y R Sbjct: 309 ELR-SLSARLYRNQIGDKFAQRLLGHKSDSMAARYRDSRGR 348 >gi|315607201|ref|ZP_07882205.1| integrase [Prevotella buccae ATCC 33574] gi|315251255|gb|EFU31240.1| integrase [Prevotella buccae ATCC 33574] Length = 407 Score = 128 bits (322), Expect = 1e-27, Method: Composition-based stats. Identities = 55/373 (14%), Positives = 125/373 (33%), Gaps = 52/373 (13%) Query: 16 TRHGKIIYYFRKG--HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73 +G + Y ++ + + + Y+ A + +R+ + ++ Sbjct: 41 DDNGNPVLYETGKMVGKPKVHIKHNRRKENLQLYLIAKPRTPAERQQNKETLELAAKIRA 100 Query: 74 LISE--------YR----KSAHWGSLAVN-----SRISFE-------SYFDQIIRKSGDF 109 + YR ++ ++ ++ + D + + + Sbjct: 101 EREQQFKESMLGYRLKKDRNINFLDYYQAYIDSYTKKDLRMIKIALNRFKDFLKEQYPLY 160 Query: 110 DYR---KITTKHIRSGVESRKHTPS---SAIQFLTSMRVLFKWAVRQEYVAINPCLSVER 163 ++ + TK + + S A + + ++A+ E + +PC V Sbjct: 161 EFSIKPDLITKDMMEYFVEYLQSRSVGEGAKSIYQRFKKVVRYAIDHEVMLKDPCKGV-V 219 Query: 164 PKRKTEGIR--PWTKEDMQQFKSFWSEGSQP--RLAFEFLLYSGLRCSDSCRAGVQHLQ- 218 K + +R + +++Q + P R AF LY GLR D +++ Sbjct: 220 CKVDEQILRKDVLSMDEIQSLIQCHYDNENPNVRRAFILCLYCGLRFCDVKDLTYKNIDY 279 Query: 219 -NNIFSIKTQKTG-----TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIW 272 N++ + KT + + + L +G + L+ P ++ N + Sbjct: 280 TNHLLKFEQNKTKGHSANSGVVIPLNNGLLSLIGEAPDDLDSSIFNLP----SYESCCKS 335 Query: 273 FKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 K +AG+NK S H R A + GA + + G + E YT+ D + Sbjct: 336 VKRWVKRAGINKHISWHCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYTRAVD--K 393 Query: 331 LGIKNSRRISSVV 343 L + + + Sbjct: 394 LKEEAINSLPELK 406 >gi|222094274|ref|YP_002528333.1| site-specific integrase/recombinase [Bacillus cereus Q1] gi|229042377|ref|ZP_04190125.1| Integrase/recombinase [Bacillus cereus AH676] gi|221238331|gb|ACM11041.1| site-specific integrase/recombinase [Bacillus cereus Q1] gi|228726924|gb|EEL78133.1| Integrase/recombinase [Bacillus cereus AH676] Length = 330 Score = 128 bits (322), Expect = 1e-27, Method: Composition-based stats. Identities = 45/280 (16%), Positives = 103/280 (36%), Gaps = 26/280 (9%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISF----ESYFDQIIRKSGDFDYRK---ITTKHIRS- 121 T I+ + K +L + + +++ + + + D K +T +H++ Sbjct: 26 TFNEAITLFVKDCELRNLRPFTIKYYLNELQAFLNLLTEQEIDVSILKPYNMTEEHVKEN 85 Query: 122 ----GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177 R S L ++R + + +Q+++ NP +++ K + I ++KE Sbjct: 86 VILYMKNYRGIKVVSINTRLRALRAFYNFLYKQKHIPRNPMENIKLLKDRKRIIPTFSKE 145 Query: 178 DMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGT 231 + + + G + +L +G+R ++ V+ ++ +++ I+ K+ Sbjct: 146 QLNKLFHQPNLRTFTGVRDYTIMMLMLETGIRINELVGLSVKDIRWEDSLLVIRNAKSYR 205 Query: 232 IITVEL----PDGFMKLLAMTP-IGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--- 283 V + K +A+ + F+ D ++ A + Sbjct: 206 ERQVPIQKDMKSQLKKYIAIRGYVESNALFVTVDGTRLTRRGIQQRISIYGNMAQIKDVR 265 Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 S H R A +S GA EL A G ++ +TY Sbjct: 266 CSPHTFRHTFAKLSVQQGANIFELQAILGHTNMEIVKTYV 305 >gi|90407171|ref|ZP_01215359.1| tyrosine recombinase [Psychromonas sp. CNPT3] gi|90311747|gb|EAS39844.1| tyrosine recombinase [Psychromonas sp. CNPT3] Length = 298 Score = 128 bits (322), Expect = 1e-27, Method: Composition-based stats. Identities = 45/284 (15%), Positives = 98/284 (34%), Gaps = 29/284 (10%) Query: 75 ISEYRKSAHW--GSLAVNSRISFE-------SYFDQIIRKSGDFDYRKITTKHIRSGVES 125 I ++ S W L+ N+ S+ ++ + + + Y+ + Sbjct: 6 IDQFLDSL-WLERGLSQNTLASYRFDLCLVQNFLEANNKVLAEASYQDLCDYFSFRLYSD 64 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + SS + ++++R +++ R++ +P ++ PK + ++ ++ S Sbjct: 65 IAYKNSSTARLMSALRRYYQFLCREKLRDDDPSAKLQSPKTLKPLPKSLSESEVDGLLSA 124 Query: 186 WSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT-VELPDG 240 + + E L +GLR S+ +Q L ++ G V L + Sbjct: 125 PDLSDSVQFRDKAMLELLYATGLRVSELVGLQMQELNLQQGVVRVTGKGEKTRLVPLGEE 184 Query: 241 FMKLLAM----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAH 287 + + F + +M F K A + ++K S H Sbjct: 185 ANYWVDRYIEEVRPELLKGRSCDILFPSRRGSQMVRQTFWHRIKYYALRCNIDKTLISPH 244 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIR 330 +R AT + GA + G + + YT A DR++ Sbjct: 245 VLRHAFATHLLNYGADLRVVQMLLGHSDLSSTQIYTHIAQDRLK 288 >gi|296122593|ref|YP_003630371.1| tyrosine recombinase XerC [Planctomyces limnophilus DSM 3776] gi|296014933|gb|ADG68172.1| tyrosine recombinase XerC [Planctomyces limnophilus DSM 3776] Length = 302 Score = 128 bits (322), Expect = 1e-27, Method: Composition-based stats. Identities = 43/271 (15%), Positives = 90/271 (33%), Gaps = 26/271 (9%) Query: 85 GSLAVNSRISFESYF----DQIIRKSGDF----DYRKITTKHIRSGVESRKHTPSSAIQF 136 + + + S+ F D + + G + + + + ++ + Sbjct: 16 RNASELTLKSYAEDFGSLHDYLTERVGHITEPGQLGISELRGYVAYLNECGYAKTTIARR 75 Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQP 192 L S+R F++ R++ V NP ++ P+ + + T E + + G + Sbjct: 76 LASLRSFFRFCQREQLVEGNPAKALRTPRVGRKLPKFLTTEQIVKLLEAPPANEVDGLRD 135 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-ELPDGFMKLL------ 245 R E +GLR ++ + + + G + L K L Sbjct: 136 RAILETFYSAGLRVAELVGLNLDDWDQDAQILHVFGKGKKERIAPLGKHATKALEKWVAV 195 Query: 246 -----AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISA 298 A P K F+N ++ + G+++ S H +R AT Sbjct: 196 RKPEEAAPPQLKNALFLNRFGTRLTTRSVGRMLEKYIQLTGLDQLISPHTLRHTFATHLL 255 Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRI 329 D GA + G K++ + YT + + Sbjct: 256 DGGADLRSVQEMLGHKSLTTTQIYTHVSTQR 286 >gi|161869695|ref|YP_001598862.1| integrase/recombinase [Neisseria meningitidis 053442] gi|161595248|gb|ABX72908.1| integrase/recombinase [Neisseria meningitidis 053442] Length = 291 Score = 128 bits (322), Expect = 1e-27, Method: Composition-based stats. Identities = 46/280 (16%), Positives = 96/280 (34%), Gaps = 21/280 (7%) Query: 74 LISEYRKSAHWGS--LAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESRKHT 129 LI ++ W L N+ + ++I R+ + + + V Sbjct: 5 LIDRLLETL-WLDRRLNQNTLNGYRRDLEKIARRLSQSGRTLKDADEADLAAAVYVDGEQ 63 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---- 185 SS + L++ + L+ W R+ NP ++ PK T++ + + + Sbjct: 64 RSSQARALSACKRLYIWMEREGIRTDNPTRLLKPPKIDKNIPTLITEQQISRLLATPDTD 123 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG---- 240 G + + E + +GLR S++ ++ + I K V + Sbjct: 124 TPHGLRDKALLELMYATGLRVSEAVGLNFGNVDLDRGCITALGKGDKQRMVPMGQESAYW 183 Query: 241 ------FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFS 293 + L + + F++ K ++ + K A +AG+ S H +R Sbjct: 184 VERYYTEARPLLLKGRNCDALFVSQKKTGISRQLAWMIVKEYAGRAGIGHISPHSLRHAF 243 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 AT G + G ++ + YT A+ G+ Sbjct: 244 ATHLVQHGLDLRVVQDMLGHADLNTTQIYTHVANVWLQGV 283 >gi|153805890|ref|ZP_01958558.1| hypothetical protein BACCAC_00130 [Bacteroides caccae ATCC 43185] gi|149130567|gb|EDM21773.1| hypothetical protein BACCAC_00130 [Bacteroides caccae ATCC 43185] Length = 267 Score = 128 bits (322), Expect = 1e-27, Method: Composition-based stats. Identities = 42/224 (18%), Positives = 84/224 (37%), Gaps = 20/224 (8%) Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR--PWTKEDMQQFKSFWSEGS 190 A + + ++A+ + + +P SV K ++ +R + E++Q+ + + Sbjct: 50 AKSIYQRFKKVIRYAIDHDVMLKDPSKSVT-CKVDSQMLRKDVLSPEEIQKLAACHYDNE 108 Query: 191 QP--RLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTG-----TIITVELPDGF 241 P R AF F LY GL D +++ N + + KT + + + L D Sbjct: 109 NPNVRRAFIFCLYCGLCFCDVKDLTYKNVDYANRLLKFEQSKTKGYSASSGVVIPLNDSL 168 Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299 + ++ P+ K + K +AG++K S H R A + Sbjct: 169 LSIIGEAPVDKNCLIFDLP----TYESCCKSVKRWVKRAGIDKHISWHCARHSFAVNILN 224 Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343 GA + + G + E YT+ D +L + + + Sbjct: 225 NGANIKTVASLLGHSGLKHTEKYTRAVD--KLKEEAINSLPELK 266 >gi|254467807|ref|ZP_05081213.1| tyrosine recombinase XerC [beta proteobacterium KB13] gi|207086617|gb|EDZ63900.1| tyrosine recombinase XerC [beta proteobacterium KB13] Length = 295 Score = 128 bits (322), Expect = 1e-27, Method: Composition-based stats. Identities = 43/270 (15%), Positives = 100/270 (37%), Gaps = 20/270 (7%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR---SGVESRKHT 129 L+ ++ + L+ + ++++ +++I D + ++ IR S + + + Sbjct: 5 LLDQFLNYIKFEKRLSELTIKNYQNDINRLI-LINDKKLTEFNSEDIRLSLSKLHASGLS 63 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS-- 187 S + L+S R F + + + + +P ++ PK + + + + + + + Sbjct: 64 GKSLSRILSSWRSCFLFFNKSQLMKYDPTSGIKAPKSQKKLPQTLSIDQVFNLINIPQTN 123 Query: 188 -EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-ELPDGFMKLL 245 ++ R EF SGLR S+ + + N ++K G + L ++ L Sbjct: 124 FIDTRDRAILEFFYSSGLRLSELVNIHLSDIDTNEQTLKVLGKGNKFRIVPLGRKAIEAL 183 Query: 246 AMTP---------IGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294 + + E F+N +K+ A K A K + N H +R A Sbjct: 184 DLWILQRNKLNKLVDDEFLFLNQQGKKLTARAIQYRLKFWAQKNNIPENIHPHLLRHSFA 243 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTK 324 + + + G + + YT Sbjct: 244 SHVLQSSQDLRAVQELLGHSNISTTQIYTH 273 >gi|293607049|ref|ZP_06689392.1| integrase/recombinase [Achromobacter piechaudii ATCC 43553] gi|292814539|gb|EFF73677.1| integrase/recombinase [Achromobacter piechaudii ATCC 43553] Length = 332 Score = 128 bits (322), Expect = 1e-27, Method: Composition-based stats. Identities = 51/328 (15%), Positives = 98/328 (29%), Gaps = 51/328 (15%) Query: 56 PKREYINSPRKKPTTLKWLISE-YRKSAHWGSLAVNSRISFESYF--------------D 100 P P + I + + L+ N+ ++ Sbjct: 4 PPMSTTRPPLTSQADIDAFIDAVWLEDG----LSANTLAAYRRDLTGFARWLEDPQAYAR 59 Query: 101 QIIRKSGD------------FDYRKITTKHIRSGVESRKH--TPSSAIQFLTSMRVLFKW 146 ++ + GD I + R ++A + L ++R F W Sbjct: 60 EMADRHGDAAGEHALPVGPAKPLCDAQKADIEAWFAFRHEETRATTANRRLAALRRFFAW 119 Query: 147 AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK----SFWSEGSQPRLAFEFLLYS 202 A+R+ +PCL++ K+ + +++ + + G + R E L + Sbjct: 120 ALREHRSQRDPCLTLVAAKQPPRLPKTLSEQQVDALLRAPDATQPRGLRDRAMLETLYAT 179 Query: 203 GLRCSDSCRAGVQHLQNNIFSIKT--QKTGTIITVELPDGFMKLLA----------MTPI 250 GLR S+ + N ++ K G V L + Sbjct: 180 GLRVSELVGVRALDVSLNEGVVRVVLGKGGKDRLVPLGAEAAHWIDLYSKTARPELAAGR 239 Query: 251 GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELM 308 + FI + M+ F K A A ++ S H +R AT + GA + Sbjct: 240 QSDALFITGRAEAMSRQAFWQLVKKYALLADIHAPLSPHVLRHAFATHLLNHGADLRVVQ 299 Query: 309 ATYGWKTVDQAETYTKGADRIRLGIKNS 336 G + + YT A + + Sbjct: 300 MLLGHADISTTQIYTHVARERLKALHAA 327 >gi|328952607|ref|YP_004369941.1| integrase family protein [Desulfobacca acetoxidans DSM 11109] gi|328452931|gb|AEB08760.1| integrase family protein [Desulfobacca acetoxidans DSM 11109] Length = 281 Score = 128 bits (322), Expect = 1e-27, Method: Composition-based stats. Identities = 37/269 (13%), Positives = 88/269 (32%), Gaps = 27/269 (10%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP- 130 + YR+ + + + + G +IT + +RK TP Sbjct: 3 DHYLEIYRQQKSFHNFK-------KQIVQTLTEAFGSTRLSQITYLDLEKHRNTRKATPT 55 Query: 131 --------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP--KRKTEGIRPWTKEDMQ 180 + + + ++ + AV + P ++ K +R ++ +++ Sbjct: 56 WRGETRSDARVNREMAVLKHMLNKAVEWGMLEGTPFKKGQKLMFKENNHSLRFLSEAEIE 115 Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240 + +P E L +G+R + + + + + + K+G + + Sbjct: 116 ALLAVCPPHLRP--IVETALLTGMRKEELLSLKWEQINHGLIHLIRTKSGNPRHIPISGR 173 Query: 241 FMK----LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSAT 295 ++ L + F + + ++ N+ + S F KAG+ N H +R A+ Sbjct: 174 LVEIFQQLRHQNQLKSPYVFCDGEGRRFNSVKRS--FATACRKAGIENFRFHDLRHTFAS 231 Query: 296 ISADAGATAHELMATYGWKTVDQAETYTK 324 GA + G + Y Sbjct: 232 HLIMRGAGLKTVQELLGHSDIKMNMRYAH 260 >gi|315092744|gb|EFT64720.1| tyrosine recombinase XerD [Propionibacterium acnes HL060PA1] Length = 306 Score = 128 bits (322), Expect = 1e-27, Method: Composition-based stats. Identities = 44/284 (15%), Positives = 95/284 (33%), Gaps = 30/284 (10%) Query: 70 TLKWLISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDF------DYRKITTKHIRSG 122 ++ + +Y + L+ N+ ++ + G + ++ + R Sbjct: 4 SVGGQVEDYLRHLVVERGLSDNTVQAYRRDLLRYQEYLGSRGIGSLAEVTRVDVEEFRRH 63 Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 ++ P+S + + ++R L ++AV V + + R + T + ++ Sbjct: 64 LDHIGLAPASVTRCVVAVRNLHRFAVGSGQVQADVTAGMSPGTRSRRLPKALTMDQVESL 123 Query: 183 KSFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN-----NIFSIKTQKTGTII 233 + EG + E L +G R S+ C V ++ ++ K Sbjct: 124 LAAPDTSTVEGLRDVALLELLYGTGARVSEVCALDVDDIRRVLDDPDLGLRLIGKGDKER 183 Query: 234 TVELPDGFMKLLAMTPI-----------GKETFFINNDKQKMNATQFSIWFKAKATKAGV 282 V L K + I G+ +N ++++ + AG+ Sbjct: 184 IVPLGSYAAKAVDAWLIRGRPAWAEIGNGEHALLLNTRGRRLSRQSAWAVIRRAGEAAGL 243 Query: 283 N---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 + S H +R AT D GA + G +V + YT Sbjct: 244 DVEHLSPHSLRHSYATHLLDGGADVRVVQELLGHSSVTTTQIYT 287 >gi|163741192|ref|ZP_02148584.1| tyrosine recombinase XerD [Phaeobacter gallaeciensis 2.10] gi|161385545|gb|EDQ09922.1| tyrosine recombinase XerD [Phaeobacter gallaeciensis 2.10] Length = 337 Score = 128 bits (322), Expect = 1e-27, Method: Composition-based stats. Identities = 49/308 (15%), Positives = 104/308 (33%), Gaps = 34/308 (11%) Query: 59 EYINSPRKKPTT-LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF--DYRKIT 115 P P L+W+ + A A N+ +++ + G D+ + Sbjct: 3 PPSAQPANAPQDDLQWIATFLDAQAADLGAARNTLLAYGRDLKDVASWLGHKNLDFGSAS 62 Query: 116 TKHIRSGV---ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172 I + + ++ ++ + L++++ ++++A + + + NP + ++ P R+ + Sbjct: 63 RDDIEAYLIACDAEGLARATRARRLSAIKQIYRFAFDEGWRSDNPAIQIKGPGRQKALPK 122 Query: 173 PWTKEDMQQFKSFW-------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSI 224 ++ + S+ + E L +G+R S+ V + + + Sbjct: 123 TLEVIEVDRLLDAARQSGRNLSDRLRNTCMMELLYATGMRVSELVGLPVAAARGDPRMLL 182 Query: 225 KTQKTGTIITVELPDGFMKLLAMTPIGKET--------------FFINNDKQ--KMNATQ 268 K G V L LA ++ F + + + + Sbjct: 183 VLGKGGKERMVPLSPPARDALAAWLTTRDAAEEAAVAKGAAPSRFLFPSRGKSGHLTRHR 242 Query: 269 FSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 F + K A G+ S H +R AT GA + A G + E YT Sbjct: 243 FYLLIKEFAVAGGLPPEAVSPHTLRHAFATHLLTNGADLRAIQALLGHADIATTEIYTHV 302 Query: 326 ADRIRLGI 333 D RL Sbjct: 303 LD-ARLSE 309 >gi|225021521|ref|ZP_03710713.1| hypothetical protein CORMATOL_01542 [Corynebacterium matruchotii ATCC 33806] gi|224945903|gb|EEG27112.1| hypothetical protein CORMATOL_01542 [Corynebacterium matruchotii ATCC 33806] Length = 305 Score = 128 bits (322), Expect = 1e-27, Method: Composition-based stats. Identities = 55/296 (18%), Positives = 101/296 (34%), Gaps = 34/296 (11%) Query: 71 LKWLISEYRKSAH-WGSLAVNSRISFESYFDQ---IIRKSGDFDYRKITTKHIRSGV-ES 125 L +++ + + N+ ++ + + G D ++TT + + V E Sbjct: 2 LDDVVAAWLTHLKVEKGYSSNTLSNYRRDLYRYVTWLHAVGVTDLNQVTTSQVEAYVTEL 61 Query: 126 RKHTP---------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176 R+ P SSA + L R L K+A+ + V + V P T Sbjct: 62 RRGDPDRNIKPLAVSSAARALIVARGLHKFALLEGLVTTDVAADVSPPATGRHLPDVLTI 121 Query: 177 EDMQQF-------KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQK 228 ++ Q + + R E L +G R S+ V + +N ++ T K Sbjct: 122 AEITQLIDAIPTDDTASPIDLRDRALIELLYGTGARISEITALTVDNFHDNDGMLRITGK 181 Query: 229 TGTIITVELPDGFMK-----LLAMTPI----GKETFFINNDKQKMNATQFSIWFKAKATK 279 V + M L+ P+ +N + ++ K A + Sbjct: 182 GNKQRLVPVGSQAMAAVDQYLVRARPVFATGASHALLLNTRGRTLSRQSAWAVLKTAAAR 241 Query: 280 AGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLG 332 A + K S H +R AT + GA + G +V + YT A+ +R Sbjct: 242 AHITKDISPHTLRHSFATHLLEGGAGERVVQELLGHSSVTTTQIYTHVSAENLRQA 297 >gi|325917722|ref|ZP_08179910.1| tyrosine recombinase XerD subunit [Xanthomonas vesicatoria ATCC 35937] gi|325536051|gb|EGD07859.1| tyrosine recombinase XerD subunit [Xanthomonas vesicatoria ATCC 35937] Length = 337 Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats. Identities = 45/273 (16%), Positives = 90/273 (32%), Gaps = 29/273 (10%) Query: 85 GSLAVNSRISFESYFDQIIR-----KSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139 +A + S+ + + R G + +++P S + L++ Sbjct: 52 QGVARQTLDSYRRDLEGLARWRDGAGGGLLGIDRSVLFDYLRWRTEARYSPRSNARLLST 111 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195 +R + +R + +P ++ P+ + T+ + + G + R Sbjct: 112 LRAFYGLCLRDGVRSDDPTALLDPPRLPRSLPKALTETQIDALLAAPDIQTPLGLRDRAM 171 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVEL---------------PD 239 E + +GLR S+ + ++ T K V L Sbjct: 172 LELMYAAGLRVSELVNLPAVGVNLRQGVLRVTGKGSKERLVPLGEESQHWLERYLHEARP 231 Query: 240 GFMKLLAMTPIGKET-FFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSAT 295 A+ + + FI+ +Q + F K A AG++ S HG+R AT Sbjct: 232 LLADHKAVAAVDGQVPLFIDAARQPPSRQHFWALVKRYAAVAGIDPATVSPHGLRHSFAT 291 Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADR 328 + GA L G ++ + YT A + Sbjct: 292 HLLNHGADLRALQMLLGHSSLSTTQIYTLVARQ 324 >gi|170020889|ref|YP_001725843.1| lambda integrase [Escherichia coli ATCC 8739] gi|169755817|gb|ACA78516.1| lambda integrase [Escherichia coli ATCC 8739] Length = 356 Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats. Identities = 62/343 (18%), Positives = 115/343 (33%), Gaps = 25/343 (7%) Query: 7 LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHE---STFIPAYMSALTGSTPKREYINS 63 LPP + R+ Y G+ L + I A + +G K Sbjct: 12 LPPNLY---IRNNGYYCYRDPRTGKEFGLGRDRRIAITEAIQANIELFSGHKHKPLTARI 68 Query: 64 PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123 TL + Y K + + I++ S I R D ITTK I + + Sbjct: 69 NSDNSVTLHSWLDRYEKILASRGIKQKTLINYMSKIKAIRRGLPDAPLEDITTKEIAAML 128 Query: 124 ESRKH--TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 +SA +++ F+ A+ + ++ NP + K + R E ++ Sbjct: 129 NGYIDEGKAASAKLIRSTLSDAFREAMAEGHITTNPVAATRAAKSEVRRSRLTADEYLKI 188 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE----- 236 +++ S RLA E + +G R D C + + ++ KTG I + Sbjct: 189 YQAAESSPCWLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAIPTTLHV 248 Query: 237 ----LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-----NKSAH 287 + +G ET + ++ +++ S +F +G+ + H Sbjct: 249 DALGISMKETLDKCKKILGGETIIASTRREPLSSGTVSRYFMRARKASGLSFEGDPPTFH 308 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 +R + + + G K+ A Y DR R Sbjct: 309 ELR-SLSARLYEKQISDKFAQHLLGHKSDTMASQY--RDDRGR 348 >gi|117625125|ref|YP_854113.1| site-specific tyrosine recombinase XerD [Escherichia coli APEC O1] gi|115514249|gb|ABJ02324.1| site-specific tyrosine recombinase XerD [Escherichia coli APEC O1] Length = 264 Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats. Identities = 40/238 (16%), Positives = 86/238 (36%), Gaps = 19/238 (7%) Query: 112 RKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171 + + + + + +S+ + L+++R LF++ R+++ +P + PK Sbjct: 17 QSDDLQALLAERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLP 76 Query: 172 RPWTKEDMQQFKSF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT- 226 + ++ +++ + + E L +GLR S+ + + ++ Sbjct: 77 KDLSEAQVERLLQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVI 136 Query: 227 QKTGTIITVELPDGFMKLLAMTPIGKETFFIN----------NDKQKMNATQFSIWFKAK 276 K V L + + L + +N Q+M F K Sbjct: 137 GKGNKERLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHY 196 Query: 277 ATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIR 330 A AG++ S H +R AT + GA + G + + YT A +R+R Sbjct: 197 AVLAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLR 254 >gi|322806106|emb|CBZ03673.1| tyrosine recombinase XerD [Clostridium botulinum H04402 065] Length = 263 Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats. Identities = 40/252 (15%), Positives = 97/252 (38%), Gaps = 18/252 (7%) Query: 99 FDQIIRKSGD--FDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAIN 156 F + +R G+ +T ++ SS ++ + S+R +K+ +++ V+ + Sbjct: 4 FSEFVRNRGERILSVDTVTIMAFVQYLQREGRATSSIVRNIVSVRNFYKYLIKKNMVSED 63 Query: 157 PCLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQPRLAFEFLLYSGLRCSDSCRAG 213 P L E PK + + + E++ + + +G + + E + +G++ ++ Sbjct: 64 PTLGYEIPKIERTIPKILSVEEVDKLLNSPNSSKKGLRDKAMLELMYATGVKITELLNLN 123 Query: 214 VQHLQNNIFSIKTQKTGTIITVELPDG------FMKLLAMTPIGK----ETFFINNDKQK 263 + + IK + + + +P G L + P + F+N + Sbjct: 124 IYDINLKFNYIKCRGSKKRERI-IPIGSYAIKCLKNYLEVRPAINVYNLDYLFLNLKGTQ 182 Query: 264 MNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321 M F K A +A ++K ++ +R A GA + G K + + Sbjct: 183 MTRQGFWKIIKFYAKEASIDKEIDSYTLRHSFAVHLLQNGADIKSVQELLGHKDLAATQI 242 Query: 322 YTKGADRIRLGI 333 Y+ + + ++ Sbjct: 243 YSSISKKSKIAE 254 >gi|320637940|gb|EFX07713.1| Phage integrase family protein [Escherichia coli O157:H7 str. G5101] Length = 356 Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats. Identities = 62/343 (18%), Positives = 115/343 (33%), Gaps = 25/343 (7%) Query: 7 LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHE---STFIPAYMSALTGSTPKREYINS 63 LPP + R+ Y G+ L + I A + +G K Sbjct: 12 LPPNLY---IRNNGYYCYRGPRTGKEFGLGRDRRIAITEAIQANIELFSGHKHKPLTARI 68 Query: 64 PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123 TL + Y K + + I++ S I R D ITTK I + + Sbjct: 69 NSDNSVTLHSWLDRYEKILASRGIKQKTLINYMSKIKAIRRGLPDAPLEDITTKEIAAML 128 Query: 124 ESRKH--TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 +SA +++ F+ A+ + ++ NP + K + R E ++ Sbjct: 129 NGYIDEGKAASAKLIRSTLSDAFREAIAEGHITTNPVAATRAAKSEVRRSRLTADEYLKI 188 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE----- 236 +++ S RLA E + +G R D C + + ++ KTG I + Sbjct: 189 YQAAESSPCWLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAIPTTLHV 248 Query: 237 ----LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-----NKSAH 287 + +G ET + ++ +++ S +F +G+ + H Sbjct: 249 DALGISMKETLDKCKEILGGETIIASTRREPLSSGTVSRYFMRARKASGLSFEGDPPTFH 308 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 +R + + + G K+ A Y DR R Sbjct: 309 ELR-SLSARLYEKQISDKFAQHLLGHKSDTMASQY--RDDRGR 348 >gi|220912288|ref|YP_002487597.1| tyrosine recombinase XerD [Arthrobacter chlorophenolicus A6] gi|219859166|gb|ACL39508.1| tyrosine recombinase XerD [Arthrobacter chlorophenolicus A6] Length = 362 Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats. Identities = 56/304 (18%), Positives = 99/304 (32%), Gaps = 37/304 (12%) Query: 57 KREYINSPRKKPTTLKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKS---GDFDYR 112 K PT + +++Y + LA N+ ++ + R G Sbjct: 39 KAPEPVQAAAAPTKIDRGVTDYLQHMGVERGLAANTLAAYRRDLARYSRYLAGTGCQQPG 98 Query: 113 KITTKHIRSGVESRKHT--------PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP 164 IT H+ V + SA + + ++R L K+ + + A +P V P Sbjct: 99 DITRHHVTGFVRALSDGSDGGTALGVRSAARTVVAVRGLHKFWALEGHTASDPASEVHPP 158 Query: 165 KRKTEGIRPWTKEDMQQFKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-- 218 + T +++ + + G + R EFL +G R S++ V + Sbjct: 159 MAGKRLPKAITVDEVTRILEAAGTDTATGLRDRALLEFLYSTGARISEAVGLDVDDISLA 218 Query: 219 ------NNIFSIKTQKTGTIITVEL-------PDGF----MKLLAMTPIGKETFFINNDK 261 K V L + + LLA G F+N Sbjct: 219 GDDTEQGPAIVRLFGKGSKERLVPLGSYGARALEAYLVRGRPLLAAKGKGTPALFLNARG 278 Query: 262 QKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319 +++ K A KA + + S H +R AT + GA + G +V Sbjct: 279 GRISRQSAWTILKVAAEKANITRDVSPHTLRHSFATHLLEGGADVRVVQELLGHASVTTT 338 Query: 320 ETYT 323 + YT Sbjct: 339 QVYT 342 >gi|270308385|ref|YP_003330443.1| integrase/recombinase [Dehalococcoides sp. VS] gi|270154277|gb|ACZ62115.1| integrase/recombinase [Dehalococcoides sp. VS] Length = 302 Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats. Identities = 43/290 (14%), Positives = 98/290 (33%), Gaps = 28/290 (9%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD-YRKITTKHIRSGVESRKHT 129 L +L+ E S + N ++ D+ K G + T + + + + K Sbjct: 9 LNYLMVEKGFSENTTEAYENDLRQMMTFADKEAAKFGKIPGWENFTRQTMLAYMLDLKER 68 Query: 130 ---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 ++ ++ + + + F + V + + NP ++ PK + ++ + Sbjct: 69 NYAITTVVRKMAAAKSFFNFMVAEGKLKENPTENISTPKVGKPLPDAISISQVRALLNQP 128 Query: 187 -----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG 240 SE + + E L SG+R ++ V + ++ K + + Sbjct: 129 VKSGSSEAKRDKAMLELLYASGMRVTELVNLNVLDIDLKEGFVRCFGKGRKERMIPIYPQ 188 Query: 241 FMKLLA----------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHG 288 + + + ++ F+N ++ K A +AG++ + H Sbjct: 189 AAQSIQEYLTEIRPNLVRAETEKALFLNRRGDRLTRQGLWQILKGYAREAGLDDVVTPHT 248 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRR 338 +R AT GA + G + + YT L ++ RR Sbjct: 249 LRHSFATHMLSGGADLRSVQELLGHANISTTQIYTH------LTSEHIRR 292 >gi|212639574|ref|YP_002316094.1| site-specific tyrosine recombinase XerC [Anoxybacillus flavithermus WK1] gi|254799325|sp|B7GGC7|XERC_ANOFW RecName: Full=Tyrosine recombinase xerC gi|212561054|gb|ACJ34109.1| Site-specific recombinase XerD [Anoxybacillus flavithermus WK1] Length = 300 Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats. Identities = 43/277 (15%), Positives = 96/277 (34%), Gaps = 27/277 (9%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS------GVESR 126 L EY + + + + ++ + +++ + R Sbjct: 9 NLFIEYLQIE--KNYSEYTIACYKHDIGEFFEFMEREQIKQLQQVSYSDVRLFLTELHQR 66 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF- 185 K + S + ++S+R +K+ +R++ V+ NP PK++ + ++++Q Sbjct: 67 KQSSRSIARKMSSLRSFYKFLLREKIVSENPFALASLPKKEQKIPHFLYPDELEQLFVVN 126 Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVE----- 236 + G + + E L +G+R S+ C + H+ ++ +I + K V Sbjct: 127 DLNTAIGQRNQAMIELLYATGIRVSECCNIRLSHIDFSVCTILISGKGNKQRYVPFGTYA 186 Query: 237 -------LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAH 287 + DG +L + + F+N + +A + S H Sbjct: 187 KEALERYIQDGRQQLASKAKTPTDVLFLNARGGALTPRGVRHILNDIVERAALSLKVSPH 246 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 R AT + GA + G + + YT Sbjct: 247 TFRHTFATHLLNEGADLRSVQELLGHAHLSSTQVYTH 283 >gi|160883082|ref|ZP_02064085.1| hypothetical protein BACOVA_01050 [Bacteroides ovatus ATCC 8483] gi|156111554|gb|EDO13299.1| hypothetical protein BACOVA_01050 [Bacteroides ovatus ATCC 8483] Length = 293 Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats. Identities = 51/276 (18%), Positives = 105/276 (38%), Gaps = 24/276 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIR----KSGDFDYRKITTKHIRSGV---ES 125 LI + + + + + +++ Q+ + G F+ ++ + IR + Sbjct: 2 LIESFLDYLQYERNYSEKTVLAYGEDIKQLQEFAQEEYGKFNPLEVEAELIREWIVSLMD 61 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + +T +S + L+S+R +K+ +RQ I+P ++ PK K + +M + Sbjct: 62 KGYTSTSVNRKLSSLRTFYKYLLRQGETTIDPLRKIKGPKNKKPLPVFLKENEMNRLLDE 121 Query: 186 WS-----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPD 239 +G + RL E +G+R S+ + + + +K T K + D Sbjct: 122 TDFGEGFKGCRDRLIIEVFYATGMRLSELIGLDNKDVDFSASLLKVTGKRNKQRLIPFGD 181 Query: 240 GFMKLL--------AMTPIGKETFFINNDKQKMNATQFSIWFKA-KATKAGVNK-SAHGV 289 +L+ P E FFI + +++ K + A + K S H + Sbjct: 182 ELQELMLEYINVRNETIPERSEAFFIRENGERLYKNLVYNLVKRNLSKVATLKKKSPHVL 241 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 R AT + A + G +++ E YT Sbjct: 242 RHTFATTMLNNEAELGVVKELLGHESITTTEIYTHA 277 >gi|194336037|ref|YP_002017831.1| tyrosine recombinase XerD [Pelodictyon phaeoclathratiforme BU-1] gi|194308514|gb|ACF43214.1| tyrosine recombinase XerD [Pelodictyon phaeoclathratiforme BU-1] Length = 304 Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats. Identities = 46/265 (17%), Positives = 96/265 (36%), Gaps = 25/265 (9%) Query: 85 GSLAVNSRISFESYFDQ--IIRKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFLTS 139 + + N+R S+ + + I + IT +HI + SS + +++ Sbjct: 23 RNFSANTRESYSNDLKRYLIFMQHRSRRLEMITKEHIEEFMGELYDIGLEASSIARNISA 82 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQFKSFWSEG---SQP 192 +R K+ V + + NP ++ +PK+ T ++ + +S G + Sbjct: 83 IRSFHKFLVIERTLNTNPAENIHQPKKAQYLPSVLTVDETMRLLAAPQSVNPPGKYVLRD 142 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELP----------DGF 241 + E L +G+R S+ Q L + ++ K V + Sbjct: 143 KAMLELLYATGVRVSELINIRQQSLYLDAGFVRIFGKGSKERLVPVGTSAIGWVTRYQAE 202 Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299 +++ + + F+N K++ + A AG+ K S H R AT + Sbjct: 203 LRIALVQRNSDDYLFLNARGIKLSRMALFTMVQKYAVMAGIEKNISPHTFRHTFATHLLE 262 Query: 300 AGATAHELMATYGWKTVDQAETYTK 324 GA + G +++ + YT Sbjct: 263 GGADLRAVQEMLGHRSIVTTQIYTH 287 >gi|149177593|ref|ZP_01856195.1| integrase/recombinase [Planctomyces maris DSM 8797] gi|148843573|gb|EDL57934.1| integrase/recombinase [Planctomyces maris DSM 8797] Length = 313 Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats. Identities = 43/287 (14%), Positives = 98/287 (34%), Gaps = 26/287 (9%) Query: 71 LKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITT--------KHIRS 121 L I + + + + + S+ + ++ +++ + + + Sbjct: 12 LHDAIDHFLRYLQIERNSSDLTLKSYAEDLESLVEYLTEYEGALLPPDQIGISELRRYVA 71 Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM-- 179 + ++ ++ + L +R F++ R+ Y NP + P+ + T + + Sbjct: 72 YLHECQYEKTTIARRLACLRSFFRYCCREGYSKTNPAKPLRTPRTGRKLPHFLTTDQIGT 131 Query: 180 --QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-E 236 + + G + R E L +GLR S+ V + I+ G + Sbjct: 132 LLEAPPANQKMGLRDRAILETLYSAGLRVSELVALNVSDWDQDANIIRVLGKGRKERIAP 191 Query: 237 LPDGFMKLL----------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-- 284 + K L + F+N K ++ + + + G++K Sbjct: 192 IGSFAAKALTHWLEEREAKPGAHPDSDALFLNRLKTRLTSRSVGRMLEKYLLQTGLDKKT 251 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 S H +R AT D GA + G K++ + YT + + L Sbjct: 252 SPHTLRHTFATHLLDGGADLRSVQELLGHKSLTTTQIYTHVSTKRLL 298 >gi|305681436|ref|ZP_07404243.1| tyrosine recombinase XerD [Corynebacterium matruchotii ATCC 14266] gi|305659641|gb|EFM49141.1| tyrosine recombinase XerD [Corynebacterium matruchotii ATCC 14266] Length = 305 Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats. Identities = 55/296 (18%), Positives = 101/296 (34%), Gaps = 34/296 (11%) Query: 71 LKWLISEYRKSAH-WGSLAVNSRISFESYFDQ---IIRKSGDFDYRKITTKHIRSGV-ES 125 L +++ + + N+ ++ + + G D ++TT + + V E Sbjct: 2 LDDVVAAWLTHLKVEKGYSSNTLSNYRRDLYRYVTWLHAVGVTDLNQVTTSQVEAYVTEL 61 Query: 126 RKHTP---------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176 R+ P SSA + L R L K+A+ + V + V P T Sbjct: 62 RRGDPDRNIKPLAVSSAARALIVARGLHKFALLEGLVTTDVAADVSPPATGRHLPDVLTI 121 Query: 177 EDMQQF-------KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQK 228 ++ Q + + R E L +G R S+ V + +N ++ T K Sbjct: 122 AEVTQLIDAIPTDDTASPIDLRDRALIELLYGTGARISEITALTVDNFHDNDGMLRITGK 181 Query: 229 TGTIITVELPDGFMK-----LLAMTPI----GKETFFINNDKQKMNATQFSIWFKAKATK 279 V + M L+ P+ +N + ++ K A + Sbjct: 182 GNKQRLVPVGSQAMAAVDQYLVRARPVFATGASHALLLNTRGRTLSRQSAWAVLKTAAAR 241 Query: 280 AGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLG 332 A + K S H +R AT + GA + G +V + YT A+ +R Sbjct: 242 AHITKDISPHTLRHSFATHLLEGGAGERVVQELLGHSSVTTTQIYTHVSAENLRQA 297 >gi|158320625|ref|YP_001513132.1| tyrosine recombinase XerD [Alkaliphilus oremlandii OhILAs] gi|158140824|gb|ABW19136.1| tyrosine recombinase XerD [Alkaliphilus oremlandii OhILAs] Length = 294 Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats. Identities = 40/262 (15%), Positives = 98/262 (37%), Gaps = 24/262 (9%) Query: 85 GSLAVNSRISFES-------YFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFL 137 L+ N+ ++ Y D ++ + F K T ++ + ++ + L Sbjct: 16 KKLSKNTLECYKRDIVQYLIYIDHVVNQ-DLFLTNKTTVITYLLHLQKSGKSTATISRNL 74 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ----QFKSFWSEGSQPR 193 S+R +K+ + + + +P +++E PK + + T E++ Q +G++ + Sbjct: 75 ASIRCFYKFLLLNKRMDYDPTINLEAPKIERKTPMTLTLEEVDLLLSQPLEITDKGARDK 134 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE----LPDGFMKLLA--- 246 E L +G+R ++ ++ + N+ I+ + + K + Sbjct: 135 AMLELLYATGIRVTELISLNLEDVNLNLGFIRCHNGSKERFIPTGSIALESLTKYIENHR 194 Query: 247 ---MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAG 301 + + + F+N + ++ F KA ++ + KS + +R AT G Sbjct: 195 ASFLKDPSERSLFLNYYGKPLSRQGFWKIIKAYTEQSNIEKSITPNTLRHSFATHLIQNG 254 Query: 302 ATAHELMATYGWKTVDQAETYT 323 A + G + + Y Sbjct: 255 ADLKSVQEMLGHADISTTQIYA 276 >gi|304407019|ref|ZP_07388673.1| integrase family protein [Paenibacillus curdlanolyticus YK9] gi|304344006|gb|EFM09846.1| integrase family protein [Paenibacillus curdlanolyticus YK9] Length = 316 Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats. Identities = 43/263 (16%), Positives = 93/263 (35%), Gaps = 23/263 (8%) Query: 85 GSLAVNSRISFESYFDQIIR---KSGDFDYRKITTKHI-RSGVESRKHTPSSAI--QFLT 138 SL+ ++ +S+E IR +G ++ H+ R + R+ +A ++ Sbjct: 36 RSLSESTLMSYERDLRHFIRFAADAGISAPEQVQKHHMARYWLTLRQEGRKNASLSRYRV 95 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS----FWSEGSQPRL 194 S+R F++ + ++ V +P ++ PK + R T ++ + G + Sbjct: 96 SLRAFFRYLMDKQRVTADPTADMDAPKPDSPPPRILTAVQVELLLASPDPAEPSGLRDSA 155 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGK-- 252 E + +G+R S+ ++H+ ++ I+ V + L Sbjct: 156 ILETMYATGIRVSELIALDLEHVHVSLGFIRCSANAKERIVPIGRAASASLEAYLQSGRE 215 Query: 253 ---------ETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAG 301 + FIN ++M K A A + + + H +R A + G Sbjct: 216 RLLRDNSEEQAVFINRRGERMTRQGLWKIVKKHAALASIEGDLTPHSLRHSFAAHLLENG 275 Query: 302 ATAHELMATYGWKTVDQAETYTK 324 A + G + + Y Sbjct: 276 ADVRAVQEMMGHAGLAATQKYVH 298 >gi|148380317|ref|YP_001254858.1| phage integrase [Clostridium botulinum A str. ATCC 3502] gi|148289801|emb|CAL83909.1| phage integrase [Clostridium botulinum A str. ATCC 3502] Length = 331 Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats. Identities = 47/258 (18%), Positives = 90/258 (34%), Gaps = 13/258 (5%) Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPSSAIQ 135 Y S L++ + +++ I I T +R + R SS Sbjct: 62 YLASKKLDGLSIKTLRNYQYNL-AIFANHLRKPLVAINTMDLRMFLAVRCKSMKQSSVNG 120 Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA 195 ++ ++ F W +EY+ NP +++ K T+E+++ + + + Sbjct: 121 QISILKSFFGWLADEEYIPKNPAKKLKQTKEPKRLRHAMTEEEIELLRQACKT-DREKAL 179 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELP----DGFMKLLAMTPI 250 EFL+ +G R S++ + S+ K V K L Sbjct: 180 VEFLISTGCRLSEAVGVNKDDINWYEMSLNVIGKGDKERKVYFSTKAKILLKKYLLARSD 239 Query: 251 GKETFFINNDK--QKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHE 306 F+ + K ++ K A++AG+NKS H R AT +AG Sbjct: 240 ENIALFVTSKKPYGRLGGRSVQREIKKIASRAGINKSIYPHLFRHSFATNKLNAGMPMPV 299 Query: 307 LMATYGWKTVDQAETYTK 324 + G ++ + Y + Sbjct: 300 IQHLMGHESPATTQIYAE 317 >gi|15839120|ref|NP_299808.1| phage-related integrase [Xylella fastidiosa 9a5c] gi|9107738|gb|AAF85328.1|AE004060_3 phage-related integrase [Xylella fastidiosa 9a5c] Length = 339 Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats. Identities = 57/332 (17%), Positives = 109/332 (32%), Gaps = 26/332 (7%) Query: 7 LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66 +P F + + + G + YY+ G R P Y A+ + E+ Sbjct: 11 IPRFRVRPQ-KSGVVYYYYDHGGTPRKETPLG------RDYGVAI-KRWAELEHAQITPA 62 Query: 67 KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVE 124 T + + YR + A N++ +++ D + I ++R ++ Sbjct: 63 IAVTFRHVAERYRAEVI-PTKAYNTQRVEHRCLAALLKFFDDPPAPFEAIKPVNVRQYLD 121 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVA-INPCLSVERPKRKTEGIRPWTKEDMQQFK 183 R SA + + L+ WA + NPC + R K + + +D Sbjct: 122 WRTSKV-SANREVALFSHLWNWARSKGITDLPNPCAGIRRNKERGRDVYI---DDTTYRA 177 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243 + + R A + +G R D + + + + I+ KTG + + + Sbjct: 178 VYHAADQTLRDAMDLAYLTGQRVGDVASMDERQIIDGVLLIRQAKTGAKVAISITGELAV 237 Query: 244 LLAMTPIGKE-------TFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKFS 293 L+ K ++ + FK AG+ K +R + Sbjct: 238 LIKRIFDHKRGLKLRSTRLIVDEKGFGLGCMALRYRFKKARAAAGIAKQVFQFRDLRAKA 297 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKG 325 AT AD + A G +V E Y + Sbjct: 298 ATDKADLAGDIRQAQAQLGHTSVVMTEHYVRK 329 >gi|282853638|ref|ZP_06262975.1| tyrosine recombinase XerD [Propionibacterium acnes J139] gi|282583091|gb|EFB88471.1| tyrosine recombinase XerD [Propionibacterium acnes J139] gi|314967052|gb|EFT11151.1| tyrosine recombinase XerD [Propionibacterium acnes HL082PA2] gi|314983153|gb|EFT27245.1| tyrosine recombinase XerD [Propionibacterium acnes HL110PA3] gi|315092375|gb|EFT64351.1| tyrosine recombinase XerD [Propionibacterium acnes HL110PA4] gi|315103783|gb|EFT75759.1| tyrosine recombinase XerD [Propionibacterium acnes HL050PA2] gi|327327186|gb|EGE68962.1| tyrosine recombinase XerD [Propionibacterium acnes HL103PA1] Length = 306 Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats. Identities = 44/284 (15%), Positives = 95/284 (33%), Gaps = 30/284 (10%) Query: 70 TLKWLISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDF------DYRKITTKHIRSG 122 ++ + +Y + L+ N+ ++ + G + ++ + R Sbjct: 4 SVGGQVEDYLRHLVVERGLSDNTVQAYRRDLLRYQEYLGSRGIGSLAEVTRVDVEEFRRH 63 Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 ++ P+S + + ++R L ++AV V + + R + T + ++ Sbjct: 64 LDHIGLAPASVTRCVVAVRNLHRFAVGSGQVQADVTAGMSPGTRSRRLPKALTMDQVESL 123 Query: 183 KSFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN-----NIFSIKTQKTGTII 233 + EG + E L +G R S+ C V ++ ++ K Sbjct: 124 LAAPDTSTVEGLRDAALLELLYGTGARVSEVCALDVDDIRRVLDDPDLGLRLIGKGDKER 183 Query: 234 TVELPDGFMKLLAMTPI-----------GKETFFINNDKQKMNATQFSIWFKAKATKAGV 282 V L K + I G+ +N ++++ + AG+ Sbjct: 184 IVPLGSYAAKAVDAWLIRGRPAWAEIGNGEHALLLNTRGRRLSRQSAWAVIRRAGEAAGL 243 Query: 283 N---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 + S H +R AT D GA + G +V + YT Sbjct: 244 DVEHLSPHSLRHSYATHLLDGGADVRVVQELLGHSSVTTTQIYT 287 >gi|148266023|ref|YP_001232729.1| tyrosine recombinase XerC [Geobacter uraniireducens Rf4] gi|146399523|gb|ABQ28156.1| tyrosine recombinase XerD subunit [Geobacter uraniireducens Rf4] Length = 294 Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats. Identities = 50/275 (18%), Positives = 97/275 (35%), Gaps = 23/275 (8%) Query: 72 KWLISEY--RKSAHWGSLAVNSRISFESYFDQI-----IRKSGDFDYRKITTKHIRSGVE 124 K I ++ S +++ ++ ++ S +Q + D +T IR + Sbjct: 2 KQAIEQFCRYLSTE-RNVSPHTLGAYRSDLEQFLAFIDREQRPGADVNSVTHLLIRRYMA 60 Query: 125 S--RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM--- 179 + H SS + L ++R F++ +R+ A NP V PK + + +++ Sbjct: 61 QLHKDHQKSSIGRKLAAIRAFFRYLLREGLAAKNPAELVSTPKMEKKVPFHLNIDEVTAL 120 Query: 180 -QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVEL 237 + +S S + R E L G+R S+ V + + + K V + Sbjct: 121 VEAPQSADSLSLRNRAILETLYSCGIRVSELTGLNVGDVDMDERLARVLGKGNKERIVPV 180 Query: 238 PDGFMKLLAM------TPIGKETFFINNDKQKMNATQFSIWFKAKATK-AGVNK-SAHGV 289 LA P +N ++ + + K A + K S H + Sbjct: 181 GTYARNALAAYLASRNNPSMDAPLILNARGGRLTSRSVARIIDKYIIKIAAMKKVSPHTL 240 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 R AT + GA + G ++ + YT Sbjct: 241 RHTFATHMLEGGADLRAIQELLGHSSLSTTQKYTH 275 >gi|76579073|gb|ABA48548.1| tyrosine recombinase XerD [Burkholderia pseudomallei 1710b] Length = 508 Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats. Identities = 53/307 (17%), Positives = 97/307 (31%), Gaps = 28/307 (9%) Query: 52 TGSTPKREYINSPRKKPTTLKWLISE----YRKSAHW--GSLAVNSRISFESYFDQIIRK 105 G P + + WL S A W L+ N+ ++ + Sbjct: 192 AGRAPAQPADRPVDALAASPAWLDSRASIDLFCDAMWLEHGLSRNTLDAYRRDLQLFAQW 251 Query: 106 SGDFDYRKIT---TKHIRSGVESRKH-TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV 161 + + + +R +S+ + L+ R + WAVR+ A++P L + Sbjct: 252 LAARHVASVDHASEPTLTEYIAARSDGKATSSNRRLSVFRRYYGWAVREHRAAVDPTLRI 311 Query: 162 ERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL 217 K+ ++ ++ + G + R E + SGLR S+ + Sbjct: 312 ASAKQAPRFPSTLSEAQVEALLAAPDVDTPLGLRDRTMLELMYASGLRVSELVTLKTVEV 371 Query: 218 QNNIFSIKTQKTGTIITV---------ELPDGFMKLLAMT--PIGKETFFINNDKQKMNA 266 N ++ G+ + + + F+ M Sbjct: 372 GLNEGVVRVTGKGSKERLVPFGEVAHGWIERYLRDARPALLGARAADALFVTARGDGMTR 431 Query: 267 TQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 QF K A +A V + S H +R AT + GA + G + + YT Sbjct: 432 QQFWNIIKRHAQQADVRVHLSPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTH 491 Query: 325 GADRIRL 331 A R RL Sbjct: 492 VA-RERL 497 >gi|320659984|gb|EFX27526.1| Phage integrase family protein [Escherichia coli O55:H7 str. USDA 5905] Length = 356 Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats. Identities = 62/343 (18%), Positives = 114/343 (33%), Gaps = 25/343 (7%) Query: 7 LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHE---STFIPAYMSALTGSTPKREYINS 63 LPP + R+ Y G+ L + I A + +G K Sbjct: 12 LPPNLY---IRNNGYYCYRDPRTGKEFGLGRDRRIAITEAIQANIELFSGHKHKPLTARI 68 Query: 64 PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123 TL + Y K + + I++ S I R D ITTK I + + Sbjct: 69 NSDNSVTLHSWLDRYEKILASRGIKQKTLINYMSKIKAIRRGLPDAPLEDITTKEIAAML 128 Query: 124 ESRKH--TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 SA +++ F+ A+ + ++ NP + K + R E ++ Sbjct: 129 NGYIDEGKAVSAKLIRSTLSDAFREAIAEGHITTNPVAATRAAKSEVRRSRLTADEYLKI 188 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE----- 236 +++ S RLA E + +G R D C + + ++ KTG I + Sbjct: 189 YQAAESSPCWLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAIPTTLHV 248 Query: 237 ----LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-----NKSAH 287 + +G ET + ++ +++ S +F +G+ + H Sbjct: 249 DALGISMKETLDKCKEILGGETIIASTRREPLSSGTVSRYFMRARKASGLSFEGDPPTFH 308 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 +R + + + G K+ A Y DR R Sbjct: 309 ELR-SLSARLYEKQISDKFAQHLLGHKSDTMASQY--RDDRGR 348 >gi|260655111|ref|ZP_05860599.1| integrase/recombinase XerD [Jonquetella anthropi E3_33 E1] gi|260630222|gb|EEX48416.1| integrase/recombinase XerD [Jonquetella anthropi E3_33 E1] Length = 319 Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats. Identities = 51/288 (17%), Positives = 102/288 (35%), Gaps = 24/288 (8%) Query: 71 LKWLISEYRKSAHWGSL----AVNSRISFESYFDQIIR---KSGDFDYRKITTKHIR--- 120 L+ I Y W SL + + +++ S +Q + G+ D +T + +R Sbjct: 26 LETWIGRY---IDWISLAQNCSPATALNYRSDLEQFAAFAGQKGEADLSALTPERVRLFI 82 Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 G+ + +S + L+++R + Q + +P L + PK + T++ + Sbjct: 83 RGLSGWGLSATSVSRKLSALRGFCGYLTDQSAIPSDPTLPIRGPKWPDHLPQALTQDAVN 142 Query: 181 QFKSFW---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-IITVE 236 + S ++ R E +GLR ++ L I G+ V Sbjct: 143 RLISAAGTIEPAARNRCLLELAYSAGLRVAELVSLKWSDLDETERWITVMGKGSKERMVP 202 Query: 237 LPDGFMKLLA-----MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVR 290 LA P K F + + +A + AG S H +R Sbjct: 203 YGQWAASALAEWKAQCPPSEKGWVFPGKGGKSLTERTVHRLVEAASQLAGTPGASPHTLR 262 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKNSR 337 AT + GA+ + G +++ + Y + + +R+R + Sbjct: 263 HCFATHMLEGGASVKAVQELLGHESLLTTQRYLRISPERLRRSYDDVN 310 >gi|323341690|ref|ZP_08081923.1| tyrosine recombinase XerC [Erysipelothrix rhusiopathiae ATCC 19414] gi|322464115|gb|EFY09308.1| tyrosine recombinase XerC [Erysipelothrix rhusiopathiae ATCC 19414] Length = 296 Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats. Identities = 36/276 (13%), Positives = 94/276 (34%), Gaps = 20/276 (7%) Query: 74 LISEYRKSAHWGSLA-VNSRISFESYFDQIIRKSGDFDYRKITT---KHIRSGVESRKHT 129 L+ ++ + + + ++ +++E Q + ++ + + + Sbjct: 6 LVMDFMRHIAITNTSSEHTNVAYERDIRQFLDFIEGQAVHEVDRLMAYDYLNMLYDSNLS 65 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE- 188 SS + ++++R +K+ + NP ++ ++ ++++ E Sbjct: 66 SSSVARKISTLRSFYKFLQINYGLTDNPFQQIKIKRQGRHLPHFLMYDEIETLLLSCDES 125 Query: 189 --GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT--------VELP 238 G + ++ E + GLR S+ + L S++ G V Sbjct: 126 VLGVRNQVMIELMYACGLRVSEVVDLQIHDLDLTERSLRVIGKGNKERQLFFYESLVPKL 185 Query: 239 DGFMKLLAMTPI---GKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFS 293 ++ L E F+N + + + + AG+ H +R Sbjct: 186 WSYLNLYRPQFPNVSDTEAVFLNQRGKPLTPRGIQHILEHQGKTAGLRMKLHPHMLRHSF 245 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 AT D GA+ + G +++ + YT + + Sbjct: 246 ATHLLDNGASLRVVQTLLGHESLSTTQIYTHVSMQK 281 >gi|238026028|ref|YP_002910259.1| phage-related integrase [Burkholderia glumae BGR1] gi|237875222|gb|ACR27555.1| Phage-related integrase [Burkholderia glumae BGR1] Length = 339 Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats. Identities = 63/345 (18%), Positives = 117/345 (33%), Gaps = 41/345 (11%) Query: 2 TPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYI 61 T +L LPP + ++T GK YY+ G R + F+ A E Sbjct: 6 TKNLHLPPRMRIKQTSSGKTYYYYDIGGKPRRWKALGGD--FVEALRL-----YADLEQG 58 Query: 62 NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI--IRKSGDFDYRKITTKHI 119 + T + + Y S AV +R + +++ S +I HI Sbjct: 59 DRTASTLVTFRHVAERYLVDV-LPSKAVETRRTNLLQLEKLYSFFDSPPAPLDEIKPIHI 117 Query: 120 RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAI-NPCLSVERPKRKTEG-------- 170 R ++ RK +P SA + + +F A NPC V + + Sbjct: 118 RKYLDWRKASPVSANREIALFSHIFNKAREWGATDRPNPCAGVRKHREAGRDVYVGDQLY 177 Query: 171 IRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230 R W K D+ R A + +G R +D + + +++ + +++ KTG Sbjct: 178 RRVWEKADI-----------PLREAMDLAYLTGQRPADVLKMDERDIRDGVVTVRQNKTG 226 Query: 231 TIITVELPDGFMKLLAMTPIGK-------ETFFINNDKQKMNATQFSIWFKAKATKAGVN 283 + +E+ LL K ++ + + + F AG+ Sbjct: 227 ARLRIEIVGELATLLDRIAARKIDHNPRSTRLIVDEQGRPLGQSALRFRFDRTREAAGIA 286 Query: 284 K---SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 K +R + T ++ + + G +V E Y + Sbjct: 287 KAEFQFRDLRAKAGTD-KESASDLRGAQSLLGHGSVAMTEHYVRK 330 >gi|254669734|emb|CBA03915.1| site-specific recombinase [Neisseria meningitidis alpha153] Length = 291 Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats. Identities = 45/280 (16%), Positives = 97/280 (34%), Gaps = 21/280 (7%) Query: 74 LISEYRKSAHWGS--LAVNSRISFESYFDQIIRKSGDFD--YRKITTKHIRSGVESRKHT 129 LI ++ W L+ N+ + ++I R+ + + + V Sbjct: 5 LIDRLLETL-WLDRRLSQNTLNGYRRDLEKIARRLSQSGRMLKDADEADLAAAVYVDGEQ 63 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---- 185 SS + L++ + L+ W R+ NP ++ PK T++ + + + Sbjct: 64 RSSQARALSACKRLYIWMEREGIRTDNPTRLLKPPKIDKNIPTLITEQQISRLLATPDTD 123 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG---- 240 G + + E + +GLR S++ + + I K + + Sbjct: 124 TPHGLRDKALLELMYATGLRVSEAVGLNFGSVDLDRGCITALGKGDKQRMIPMGQESAYW 183 Query: 241 ------FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFS 293 + L + + F++ K ++ + K A++AG+ S H +R Sbjct: 184 VERYYTEARPLLLKGRNCDALFVSQKKTGISRQLAWMIVKEYASQAGIGHISPHSLRHAF 243 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 AT G + G ++ + YT A+ G+ Sbjct: 244 ATHLVRHGLDLRVVQDMLGHADLNTTQIYTHVANVWLQGV 283 >gi|315646363|ref|ZP_07899481.1| integrase family protein [Paenibacillus vortex V453] gi|315278006|gb|EFU41326.1| integrase family protein [Paenibacillus vortex V453] Length = 294 Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats. Identities = 45/275 (16%), Positives = 98/275 (35%), Gaps = 24/275 (8%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH------IRSGVE 124 K + EY L+ ++ S+ + + I + D + + + Sbjct: 2 KQYLDEYVTYLEEVKRLSRSTIESYRADLNGFIEYAADREVTHPQDVNRTVLGLYLGRLR 61 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 + SS ++ S+R F++ VRQ + +P ++RPK + + + T E + + S Sbjct: 62 QQGKAASSQLRCTASLRSFFQYLVRQSVIGQDPTQLLDRPKPERKPPQAVTIEQVDKLLS 121 Query: 185 F----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-KTGTIITVELPD 239 +G++ R E L SG++ S+ + L + ++ G + + Sbjct: 122 APDSDTPQGARDRAMLELLYASGIKVSELVSLSIHDLNMEMRFLRCAVPGGKERILPISQ 181 Query: 240 GFMKLLA----------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAH 287 + +A + +E F+N+ ++ F K A +++ + H Sbjct: 182 IAAQSVAYYMRDMRSQLIRDAEEEALFLNSLGTRLTRQGFWKIIKKYGKLAEIDEEITPH 241 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 +R A GA + G + Y Sbjct: 242 TLRHSFAIHLLQNGADLRSVQEMLGHSALSTTGMY 276 >gi|192362212|ref|YP_001983742.1| tyrosine recombinase XerC [Cellvibrio japonicus Ueda107] gi|190688377|gb|ACE86055.1| tyrosine recombinase XerC [Cellvibrio japonicus Ueda107] Length = 313 Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats. Identities = 40/267 (14%), Positives = 99/267 (37%), Gaps = 22/267 (8%) Query: 78 YRKSAHWGSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIR---SGVESRKHTPS 131 Y +S + +++ ++ ++ R +G ++ + +R + + + Sbjct: 18 YMRSE--KQFSPHTQSNYARDLEKFQRYCRDAGIQQLTEVDARAVRMAVASLHRQGLAGK 75 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS---E 188 S ++L+S+R F++A+R +++INP + PK + + + QF + Sbjct: 76 SLQRWLSSLRGFFQYAIRHHWMSINPADGIAAPKTPKKLPKTLDVDQTAQFVAVEGDDFI 135 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVE--------LPD 239 + R E + SGLR ++ + + + T K T+ L D Sbjct: 136 HKRDRALLELIYSSGLRLAEVTSLNLGDIDWGDAMVTVTGKGSKTRTLPVGSVAIAALKD 195 Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATIS 297 + P + FI ++++ + + + + G++ H +R A+ Sbjct: 196 WLSQREQYAPASEPALFITQRGKRISHRAVQLRLQQLSVQQGMDNPVHPHMLRHSFASHM 255 Query: 298 ADAGATAHELMATYGWKTVDQAETYTK 324 ++ + G + + YT Sbjct: 256 LESSGDLRLVQELLGHANISTTQIYTH 282 >gi|219848360|ref|YP_002462793.1| integrase family protein [Chloroflexus aggregans DSM 9485] gi|219542619|gb|ACL24357.1| integrase family protein [Chloroflexus aggregans DSM 9485] Length = 299 Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats. Identities = 38/269 (14%), Positives = 96/269 (35%), Gaps = 26/269 (9%) Query: 82 AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE------SRKHTPSSAIQ 135 A ++ N+ ++ + +Q+ + + + + + +K+ S+ + Sbjct: 13 ADERKMSANTTAAYRTDLEQLCSFLQERGIEQWNDVNTEAMLAFVITLKEKKYANSTVAR 72 Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW------SEG 189 L +++ F + + V +P ++ P+ + ++ + + EG Sbjct: 73 RLAAIKSFFSFLRERNVVHHDPTEQLDAPRVDRFPPKAISQHQVDELLELPLQNNSGPEG 132 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG-------- 240 + + E L +G+R S+ + + +++ + G + L + Sbjct: 133 LRDKAMLEVLYATGMRVSELVALNIDDISFTSKTVRCLGRQGRERILPLSEAALTALEEY 192 Query: 241 ----FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSAT 295 KL E F+N+ +++ F + K A +AG+ + + H +R A Sbjct: 193 LDIARPKLANHAHGNDEALFLNHRGKRLTRQGFWLILKEYADRAGLHDLTPHMLRHSFAA 252 Query: 296 ISADAGATAHELMATYGWKTVDQAETYTK 324 G EL G ++ + YT Sbjct: 253 HQLRNGVDLRELQERLGHASIATTQIYTH 281 >gi|297626543|ref|YP_003688306.1| Site-specific recombinase [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296922308|emb|CBL56880.1| Site-specific recombinase [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 331 Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats. Identities = 47/316 (14%), Positives = 96/316 (30%), Gaps = 38/316 (12%) Query: 52 TGSTPKREYINSPRKKPTTLKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSG--- 107 P L + +Y L+ N+ ++ + +R Sbjct: 5 AARPPSHGNKPVSGPTAGRLGNWLEDYLDHLGVERGLSPNTVAAYRRDLTRYLRHLSSRG 64 Query: 108 --------DFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCL 159 D + R + PSS + + ++R+ +A R+ V N Sbjct: 65 IDDPSRITTADVTSFEEELSRGDASHKALAPSSVGRAVVAVRMFHGFAAREGLVDHNVAA 124 Query: 160 SVERPKRKTEGIRPWTKEDMQQF----KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQ 215 ++ P+ + +++ + + G + FE L +G R S++ V Sbjct: 125 ALHPPRAGKRLPKALGVDEVARLIDSIERQTPIGLRDAALFEVLYGTGARISEALSLDVD 184 Query: 216 HLQ------NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGK------------ETFFI 257 L + + K V L + + F+ Sbjct: 185 DLTRVLADPDGPLRV-VGKGNKERVVPLGSYARSAVQAWLVRGRPALAERAREFTPALFL 243 Query: 258 NNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKT 315 N +++ + +A +AG+ H +R AT D GA + G + Sbjct: 244 NTRGARLSRQSAWEALRTRARQAGITADIGPHSLRHSFATHLLDGGADIRVVQELLGHAS 303 Query: 316 VDQAETYTK-GADRIR 330 V + YT+ A ++R Sbjct: 304 VSTTQIYTEVTAQQLR 319 >gi|262406148|ref|ZP_06082698.1| tyrosine recombinase XerC [Bacteroides sp. 2_1_22] gi|294644043|ref|ZP_06721820.1| tyrosine recombinase XerC [Bacteroides ovatus SD CC 2a] gi|294810195|ref|ZP_06768862.1| tyrosine recombinase XerC [Bacteroides xylanisolvens SD CC 1b] gi|298483048|ref|ZP_07001229.1| tyrosine recombinase XerC [Bacteroides sp. D22] gi|262357023|gb|EEZ06113.1| tyrosine recombinase XerC [Bacteroides sp. 2_1_22] gi|292640567|gb|EFF58808.1| tyrosine recombinase XerC [Bacteroides ovatus SD CC 2a] gi|294442607|gb|EFG11407.1| tyrosine recombinase XerC [Bacteroides xylanisolvens SD CC 1b] gi|298270792|gb|EFI12372.1| tyrosine recombinase XerC [Bacteroides sp. D22] Length = 293 Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats. Identities = 51/276 (18%), Positives = 105/276 (38%), Gaps = 24/276 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIR----KSGDFDYRKITTKHIRSGV---ES 125 LI + + + + + +++ Q+ + G F+ ++ + IR + Sbjct: 2 LIESFLDYLQYERNYSEKTVLAYGEDIKQLQEFAQEEYGKFNPLEVEAELIREWIVSLMD 61 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + +T +S + L+S+R +K+ +RQ I+P ++ PK K + +M + Sbjct: 62 KGYTSTSVNRKLSSLRTFYKYLLRQGETTIDPLRKIKGPKNKKPLPVFLKENEMNRLLDE 121 Query: 186 WS-----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPD 239 +G + RL E +G+R S+ + + + +K T K + D Sbjct: 122 TDFGEGFKGCRDRLIIEMFYATGMRLSELIGLDNKDVDFSASLLKVTGKRNKQRLIPFGD 181 Query: 240 GFMKLL--------AMTPIGKETFFINNDKQKMNATQFSIWFKA-KATKAGVNK-SAHGV 289 +L+ P E FFI + +++ K + A + K S H + Sbjct: 182 ELQELMLEYINVRNETIPERSEAFFIRENGERLYKNLVYNLVKRNLSKVATLKKKSPHVL 241 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 R AT + A + G +++ E YT Sbjct: 242 RHTFATTMLNNEAELGAVKELLGHESITTTEIYTHA 277 >gi|91205255|ref|YP_537610.1| integrase [Rickettsia bellii RML369-C] gi|239947373|ref|ZP_04699126.1| integrase [Rickettsia endosymbiont of Ixodes scapularis] gi|91068799|gb|ABE04521.1| Integrase [Rickettsia bellii RML369-C] gi|239921649|gb|EER21673.1| integrase [Rickettsia endosymbiont of Ixodes scapularis] Length = 388 Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats. Identities = 47/283 (16%), Positives = 102/283 (36%), Gaps = 13/283 (4%) Query: 52 TGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDY 111 G P E ++ T K Y + + + + D+ + + Sbjct: 90 QGYNPIEEKARLSKEP--TFKEFYDRYL--DEYSKINNKRWKDYAASVDRYAKHLYNRKI 145 Query: 112 RKITTKHIRSGVESR-KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170 I I+ K A +FL + +F A+ E + +NP + +++ K ++ Sbjct: 146 STIQKADIQELFNKLTKTGKYGANRFLEVLSPVFSKAIEWELLTVNPVIGIKKHKEQSR- 204 Query: 171 IRPWTKEDMQQFKSFWSE--GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKT 226 R T+E++ +F + SE + F LY+ +R + + + + + Sbjct: 205 DRYLTREEIPRFFTAISEEQNQVMKDFFLIALYTSVRKDNVLTMRWEQISFADKQLYLPD 264 Query: 227 QKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMN--ATQFSIWFKAKATKAGV-N 283 K G + L D +++L ++ ++ + + + +K KAG+ N Sbjct: 265 TKNGDPHRLPLLDQAVEILKARKEQSDSIWVFPSETSSSGHLQEPKKAWKRICKKAGIEN 324 Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 H +R+ + A GA + + + YT+ A Sbjct: 325 LRIHDLRRTIPSWMAMTGANQYVIGQLLNHRDPRSTAVYTRLA 367 >gi|126736338|ref|ZP_01752080.1| tyrosine recombinase XerD [Roseobacter sp. CCS2] gi|126714159|gb|EBA11028.1| tyrosine recombinase XerD [Roseobacter sp. CCS2] Length = 313 Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats. Identities = 45/269 (16%), Positives = 90/269 (33%), Gaps = 29/269 (10%) Query: 90 NSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGV---ESRKHTPSSAIQFLTSMRVLF 144 N+++++ G + + H+ S + E+ S+ + L++++ L+ Sbjct: 28 NTQLAYARDLQDFAGWLGPKGLHFSDASRDHVESYLIDCEAEGLAKSTRARRLSAIKQLY 87 Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF----KSFWSEGSQPRLAFEFLL 200 ++A + + NP + ++ P R+ + + E++ + ++ E + E L Sbjct: 88 RFAFEEGWRDDNPAIQIKGPGREQRLPKTLSIEEVDRLLDAARNTPKEALRNACLMELLY 147 Query: 201 YSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFMKLLAM------------ 247 +G+R ++ V + + + K V L LA Sbjct: 148 ATGMRVTELVSLPVSAARGDPRMLLVRGKGDKERLVPLSPPARAALATYLTARDKAEDAG 207 Query: 248 ----TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSATISADA 300 P K F + +F K A GV + H +R AT Sbjct: 208 RKDGKPASKFLFPSRGKSGHLTRHRFFGLIKEFAVAGGVSPAKVTPHTLRHAFATHLLAG 267 Query: 301 GATAHELMATYGWKTVDQAETYTKGADRI 329 GA + G V E YT D Sbjct: 268 GADLRSIQTMLGHADVATTEIYTHVLDER 296 >gi|295085443|emb|CBK66966.1| tyrosine recombinase XerC subunit [Bacteroides xylanisolvens XB1A] Length = 293 Score = 127 bits (320), Expect = 2e-27, Method: Composition-based stats. Identities = 51/276 (18%), Positives = 105/276 (38%), Gaps = 24/276 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIR----KSGDFDYRKITTKHIRSGV---ES 125 LI + + + + + +++ Q+ + G F+ ++ + IR + Sbjct: 2 LIESFLDYLQYERNYSEKTVLAYGEDIKQLQEFAQEEYGKFNPLEVEAELIREWIVSLMD 61 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + +T +S + L+S+R +K+ +RQ I+P ++ PK K + +M + Sbjct: 62 KGYTSTSVNRKLSSLRTFYKYLLRQGETTIDPLRKIKGPKNKKPLPVFLKENEMNRLLDE 121 Query: 186 WS-----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPD 239 +G + RL E +G+R S+ + + + +K T K + D Sbjct: 122 TDFGEGFKGCRDRLIIEMFYATGMRLSELIGLDNKDVDFSASLLKVTGKRNKQRLIPFGD 181 Query: 240 GFMKLL--------AMTPIGKETFFINNDKQKMNATQFSIWFKA-KATKAGVNK-SAHGV 289 +L+ P E FFI + +++ K + A + K S H + Sbjct: 182 ELQELMLEYISVRNETIPERSEAFFIRENGERLYKNLVYNLVKRNLSKVATLKKKSPHVL 241 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 R AT + A + G +++ E YT Sbjct: 242 RHTFATTMLNNEAELGAVKELLGHESITTTEIYTHA 277 >gi|229015121|ref|ZP_04172177.1| Integrase/recombinase [Bacillus mycoides DSM 2048] gi|228746174|gb|EEL96121.1| Integrase/recombinase [Bacillus mycoides DSM 2048] Length = 330 Score = 127 bits (320), Expect = 2e-27, Method: Composition-based stats. Identities = 45/280 (16%), Positives = 102/280 (36%), Gaps = 26/280 (9%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISF----ESYFDQIIRKSGDFDYRK---ITTKHIRS- 121 T I+ + K +L + + +++ + + + D K +T +H++ Sbjct: 26 TFDEAITLFVKDCELRNLRPFTIKYYLNELQAFLNLLTEQEIDVSILKPYNMTEEHVKEN 85 Query: 122 ----GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177 R S L ++R + + +Q+++ NP +++ K + I ++KE Sbjct: 86 VILYMKNYRGIKVVSINTRLRALRAFYNFLYKQKHIPRNPMENIKLLKDRKRIIPTFSKE 145 Query: 178 DMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGT 231 + + + G + +L +G+R ++ V+ ++ +++ I+ K+ Sbjct: 146 QLNKLFRQPNLRTFTGVRDYTIMMLMLETGIRINELVGLSVKDIRWEDSLLVIRNAKSYR 205 Query: 232 IITVEL----PDGFMKLLAMTP-IGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--- 283 V + K +A+ + F+ D ++ A + Sbjct: 206 ERQVPIQKDMKSQLKKYIAIRGYVESSALFVTVDGTRLTRRGIQQRISIYGNMAQIKDVR 265 Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 S H R A +S GA EL A G ++ TY Sbjct: 266 CSPHTFRHTFAKLSVQQGANIFELQAILGHTNMEIVRTYV 305 >gi|121634549|ref|YP_974794.1| putative integrase/recombinase [Neisseria meningitidis FAM18] gi|120866255|emb|CAM09996.1| putative integrase/recombinase [Neisseria meningitidis FAM18] gi|254671814|emb|CBA03927.1| site-specific recombinase [Neisseria meningitidis alpha275] gi|316983737|gb|EFV62718.1| tyrosine recombinase XerD [Neisseria meningitidis H44/76] gi|325197973|gb|ADY93429.1| tyrosine recombinase XerD [Neisseria meningitidis G2136] gi|325200561|gb|ADY96016.1| tyrosine recombinase XerD [Neisseria meningitidis H44/76] Length = 291 Score = 127 bits (320), Expect = 2e-27, Method: Composition-based stats. Identities = 46/280 (16%), Positives = 97/280 (34%), Gaps = 21/280 (7%) Query: 74 LISEYRKSAHWGS--LAVNSRISFESYFDQIIRKSGDFD--YRKITTKHIRSGVESRKHT 129 LI ++ W L N+ + ++I R+ + + + V Sbjct: 5 LIDRLLETL-WLDRRLNQNTLNGYRRDLEKIARRLSQSGRMLKDADEADLAAAVYVDGEQ 63 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---- 185 SS + L++ + L+ W R+ NP ++ PK T++ + + + Sbjct: 64 RSSQARALSACKRLYIWMEREGIRTDNPTRLLKPPKIDKNIPTLITEQQISRLLAAPDTD 123 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG---- 240 G + + E + +GLR S++ ++ + I K V + Sbjct: 124 TPHGLRDKALLELMYATGLRVSEAVGLNFGNVDLDRGCITALGKGDKQRMVPMGQESAYW 183 Query: 241 ----FMKLLAMTPIGK--ETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFS 293 + + G+ + F++ K ++ + K A +AG+ S H +R Sbjct: 184 VGRYYTEARPALLKGRSCDALFVSQKKTGISRQLAWMIVKEYAGRAGIGHISPHSLRHAF 243 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 AT G + G ++ + YT A+ G+ Sbjct: 244 ATHLVQHGLDLRVVQDMLGHADLNTTQIYTHVANVWLQGV 283 >gi|222529770|ref|YP_002573652.1| tyrosine recombinase XerD [Caldicellulosiruptor bescii DSM 6725] gi|312622005|ref|YP_004023618.1| tyrosine recombinase xerd [Caldicellulosiruptor kronotskyensis 2002] gi|222456617|gb|ACM60879.1| tyrosine recombinase XerD [Caldicellulosiruptor bescii DSM 6725] gi|312202472|gb|ADQ45799.1| tyrosine recombinase XerD [Caldicellulosiruptor kronotskyensis 2002] Length = 291 Score = 127 bits (320), Expect = 2e-27, Method: Composition-based stats. Identities = 42/265 (15%), Positives = 96/265 (36%), Gaps = 22/265 (8%) Query: 86 SLAVNSRISFESYFDQIIRKSGDFDYR-----KITTKHIRSGVESRKHTPSSAIQFLTSM 140 + N+ S+ + I D + + T ++ + S+ + + S+ Sbjct: 16 RFSQNTISSYLRDAKKYIEFLDDIKIKLENTSQTTLIAYIISMQKGGKSNSTIARAIVSL 75 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRLAF 196 +V +++ Q+ V I + +E PK + + T++++++ S E G + + Sbjct: 76 KVFYEFLKIQDIVDIG-KIEIEPPKLEKSPPQILTRDEVERLLSCPKEDDIKGIRDKAML 134 Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA---------- 246 E L +G+R S+ + + I + + + + + Sbjct: 135 ELLYATGIRVSELINLNLDDINLEHGYIICKNKKRDRVIPIGSYAISAVEKYLRHSRPYL 194 Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATA 304 +E F+N ++M F K A A ++K + H +R AT + GA Sbjct: 195 AKSKDEEALFLNFSGERMTRQGFWKIVKFYAQNAKIDKEITPHVLRHSFATHLIENGADV 254 Query: 305 HELMATYGWKTVDQAETYTKGADRI 329 + G + + Y + A+ Sbjct: 255 RAVQQMLGHADISTTQRYLQVANVK 279 >gi|260593377|ref|ZP_05858835.1| putative integrase [Prevotella veroralis F0319] gi|260534653|gb|EEX17270.1| putative integrase [Prevotella veroralis F0319] Length = 408 Score = 127 bits (320), Expect = 2e-27, Method: Composition-based stats. Identities = 60/296 (20%), Positives = 105/296 (35%), Gaps = 47/296 (15%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESY---FDQIIRKSGDFD----------YRKITTK 117 + I +Y ++ + D +IT Sbjct: 123 FQDYIDKY------------TKKDIRMLNIALRRFKDFLNDTPEYKKFTKRITPEQITKD 170 Query: 118 HIRSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR--P 173 I + E + A + + K+A+ + + NPC + K + ++ Sbjct: 171 MIEAFTEYLQGRSVGEGAKSIYARFKKVIKYAIEHDVITKNPCNGI-VIKVDDQILKKDV 229 Query: 174 WTKEDMQQFKSFWSEGSQP--RLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKT 229 + +++QQ + E P R AF F LYSGLR D ++ N + + KT Sbjct: 230 LSLDEIQQLIATHDERQNPEIRRAFIFCLYSGLRYCDVKDLTFANVDYSNKLLKFEQSKT 289 Query: 230 G-----TIITVELPDGFMKLL-AMTPIG-KETFFINNDKQKMNATQFSIWFKAKATKAGV 282 + + + L DG ++L+ TP K+++ N +M W K AG+ Sbjct: 290 KGHSSSSGVIIPLNDGLLRLIGEPTPAQTKDSYIFNLPSYEMCLKSLQRWVK----SAGI 345 Query: 283 NK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336 NK S H R A + GA + + G + E YT+ D ++ NS Sbjct: 346 NKHISWHCARHSFAVNILNNGANIKTVASLLGHSGLKHTEKYTRAIDSLKQEAINS 401 >gi|314923700|gb|EFS87531.1| tyrosine recombinase XerD [Propionibacterium acnes HL001PA1] Length = 306 Score = 127 bits (320), Expect = 2e-27, Method: Composition-based stats. Identities = 44/284 (15%), Positives = 95/284 (33%), Gaps = 30/284 (10%) Query: 70 TLKWLISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDF------DYRKITTKHIRSG 122 ++ + +Y + L+ N+ ++ + G + ++ + R Sbjct: 4 SVGGHVEDYLRHLVVERGLSDNTVQAYRRDLLRYQEYLGSRGIGSLAEVTRVDVEEFRRH 63 Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 ++ P+S + + ++R L ++AV V + + R + T + ++ Sbjct: 64 LDHIGLAPASVTRCVVAVRNLHRFAVGSGQVQADVTAGMSPGTRSRRLPKALTMDQVESL 123 Query: 183 KSFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN-----NIFSIKTQKTGTII 233 + EG + E L +G R S+ C V ++ ++ K Sbjct: 124 LAAPDTSTVEGLRDAALLELLYGTGARVSEVCALDVDDIRRVLDDPDLGLRLIGKGDKER 183 Query: 234 TVELPDGFMKLLAMTPI-----------GKETFFINNDKQKMNATQFSIWFKAKATKAGV 282 V L K + I G+ +N ++++ + AG+ Sbjct: 184 IVPLGSYAAKAVDAWLIRGRPAWAEIGNGEHALLLNTRGRRLSRQSAWAVIRRAGEAAGL 243 Query: 283 N---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 + S H +R AT D GA + G +V + YT Sbjct: 244 DVEHLSPHSLRHSYATHLLDGGADVRVVQELLGHSSVTTTQIYT 287 >gi|312114222|ref|YP_004011818.1| integrase family protein [Rhodomicrobium vannielii ATCC 17100] gi|311219351|gb|ADP70719.1| integrase family protein [Rhodomicrobium vannielii ATCC 17100] Length = 393 Score = 127 bits (320), Expect = 2e-27, Method: Composition-based stats. Identities = 56/354 (15%), Positives = 117/354 (33%), Gaps = 30/354 (8%) Query: 10 FVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69 FV K R +G+ + G P L G I + ++ Sbjct: 40 FVLKTRV-NGRQRW-VTIGKF-----GSPWTVETARREALRLLGEAASGNDIGAEKQAKR 92 Query: 70 T----LKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVE 124 + ++ H+ L +R S+ + + G I + + Sbjct: 93 AKGLLFGHVADQFIA-IHFPKLKPRTRESYGTIIRLHLKPAFGATPIADIRKTSVATFHA 151 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEY--VAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 TP +A L+ + + WA Q NPC ++ R R+T+ R + +++ + Sbjct: 152 RHAETPRNANHALSVLSKIMNWAEEQGLRPAESNPCRNI-RKYRETKRERYLSPDELARL 210 Query: 183 KSFWSEGSQPR-------LAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTII 233 + + + A LL +G R S+ ++ I ++ KTG + Sbjct: 211 GAALAAAEDDKTVDPYIIAAIRLLLLTGARLSEILTLRWTYVDTYRRILNLPDSKTGAKV 270 Query: 234 TVELPDGFMKLLAMTPI-GKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRK 291 + L + LL P F + + + ++ +AG++ H +R Sbjct: 271 -IPLNQAALDLLGTLPRLNSNPFVLVGRVEGQHLVNLQKPWRRIRKEAGLDDVRIHDLRH 329 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDS 345 A++S G + + G Y AD ++ + +++ + Sbjct: 330 SFASVSVGLGGSLPVIGRVLGHSQPATTARYAHVAD--KVAAELVEAAGALIGT 381 >gi|239906838|ref|YP_002953579.1| tyrosine recombinase XerD [Desulfovibrio magneticus RS-1] gi|239796704|dbj|BAH75693.1| tyrosine recombinase XerD [Desulfovibrio magneticus RS-1] Length = 285 Score = 127 bits (320), Expect = 2e-27, Method: Composition-based stats. Identities = 43/226 (19%), Positives = 79/226 (34%), Gaps = 15/226 (6%) Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 + SR S + L+++R F +A + +++ +P +E PK ++E++ + Sbjct: 46 LRSRGLASRSLARHLSALRGFFAFAADESWLSASPAALIENPKLPRLLPDVLSREEVTRL 105 Query: 183 K----SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-EL 237 + G + R E L +GLR S+ + ++ G+ V + Sbjct: 106 LDAPDTATPLGYRDRTMLELLYAAGLRVSELVGLTLADFDAQAGLLRVFGKGSKERVTPI 165 Query: 238 PDGFMKLLA--------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAH 287 M+ L+ + F+N + + K A A V S H Sbjct: 166 HSLAMEFLSTYLSSIRGAFGPKDQHVFLNRSGKGLTRQAVWKGIKRYALAAQVSTRISPH 225 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 +R AT D GA + G + E YT L + Sbjct: 226 SLRHSFATHLLDGGADLRTVQMLLGHADISATEIYTHVQAGRLLAV 271 >gi|196041298|ref|ZP_03108592.1| integrase/recombinase [Bacillus cereus NVH0597-99] gi|196027783|gb|EDX66396.1| integrase/recombinase [Bacillus cereus NVH0597-99] Length = 330 Score = 127 bits (320), Expect = 2e-27, Method: Composition-based stats. Identities = 44/280 (15%), Positives = 103/280 (36%), Gaps = 26/280 (9%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISF----ESYFDQIIRKSGD---FDYRKITTKHIRS- 121 T I+ + K +L + + +++ + + + D +T +H++ Sbjct: 26 TFDEAITLFVKDCELRNLRPFTIKYYLNELQAFLNLLTEQEIDVSLLRPYNMTEEHVKEN 85 Query: 122 ----GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177 R S L ++R + + +Q+++ NP +++ K + I ++KE Sbjct: 86 VILYMKNYRGIKVVSINTRLRALRAFYNFLYKQKHIPRNPMENIKLLKDRKRIIPTFSKE 145 Query: 178 DMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGT 231 + + + G + +L +G+R ++ V+ ++ +++ I+ K+ Sbjct: 146 QLNKLFHQPNLRTFTGVRDYTIMMLMLETGIRVNELVGLSVKDIRWEDSLLVIRNAKSYR 205 Query: 232 IITVEL----PDGFMKLLAMTP-IGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--- 283 V + + K +A+ + F+ D ++ A + Sbjct: 206 ERQVPIQRDMKNQLKKYIAIRGYVESTALFVTVDGTRLTRRGIQQRISIYGNMAQIKDVR 265 Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 S H R A +S GA EL A G ++ +TY Sbjct: 266 CSPHTFRHTFAKLSVQQGANIFELQAILGHTNMEIVKTYV 305 >gi|146297327|ref|YP_001181098.1| tyrosine recombinase XerD [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145410903|gb|ABP67907.1| tyrosine recombinase XerD subunit [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 291 Score = 127 bits (320), Expect = 2e-27, Method: Composition-based stats. Identities = 42/276 (15%), Positives = 100/276 (36%), Gaps = 23/276 (8%) Query: 74 LISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDF-----DYRKITTKHIRSGVESRK 127 ++ + + + N+ +S+ + I + D + T ++ Sbjct: 3 IVEAFYEHLCQKQRFSQNTVMSYLRDIKKYIEFLNNTGIKIEDTSQATIITYIINMQKSG 62 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + S+ + + S++V +++ V I + ++ PK + + TK+++++ S Sbjct: 63 RSNSTIARAIVSLKVFYEFLKDHNIVDIG-KIEIDPPKLERTPPQILTKDEVEKLLSCPR 121 Query: 188 E----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243 E G + + E L +G+R S+ + + I + + + ++ Sbjct: 122 EDDIKGIRDKAMLELLYATGIRVSELISLNLSDINLEHGYIICRNKKRDRIIPIGSYAIE 181 Query: 244 LLA----------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRK 291 + +E F+N + +M F K AG+NK + H +R Sbjct: 182 AVEKYLNYSRPYLARKKEEEALFLNFNGARMTRQGFWKIVKFYTNVAGINKEITPHILRH 241 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 AT + GA + G + + Y + A+ Sbjct: 242 SFATHLIENGADVRAVQQMLGHADISTTQRYLQVAN 277 >gi|255325630|ref|ZP_05366727.1| tyrosine recombinase XerD [Corynebacterium tuberculostearicum SK141] gi|255297240|gb|EET76560.1| tyrosine recombinase XerD [Corynebacterium tuberculostearicum SK141] Length = 296 Score = 127 bits (320), Expect = 2e-27, Method: Composition-based stats. Identities = 48/268 (17%), Positives = 93/268 (34%), Gaps = 22/268 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGD---FDYRKITTKHIRSGVESRKHTPS--SAIQFLTS 139 ++ N+ ++ + + GD D R +T + + ++ + + SA + L Sbjct: 19 RGVSANTLSNYRRDVRRYLAWLGDNGVEDLRSVTRPMVEAYLKDLRSHMAVSSANRALIV 78 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLA 195 R L K+AV + V ++ + V P + +++ + + R Sbjct: 79 ARGLHKFAVSEGVVDVDVAVEVTPPSTGQHLPETLSVDEVTALIEATPTETPVDVRDRAL 138 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLAM------- 247 E L +G R S+ V + + I+ K V + + L Sbjct: 139 LEMLYGTGARISEIVSLNVDDVSSAQEVIRLRGKGDKERIVPVGSHARQALDAYLVRARP 198 Query: 248 --TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGAT 303 + F+N ++ K A +A + KS H +R AT + GA Sbjct: 199 ALSKGKTPALFLNTRGGALSRQSAWTVLKTAAQRAQLGKSISPHTLRHSFATHLLEGGAD 258 Query: 304 AHELMATYGWKTVDQAETYTK-GADRIR 330 + G +V + YT AD +R Sbjct: 259 VRTVQELLGHSSVTTTQIYTHVTADSLR 286 >gi|254804633|ref|YP_003082854.1| putative site-specific recombinase/integrase [Neisseria meningitidis alpha14] gi|254668175|emb|CBA04865.1| putative site-specific recombinase/integrase [Neisseria meningitidis alpha14] Length = 291 Score = 127 bits (320), Expect = 2e-27, Method: Composition-based stats. Identities = 46/280 (16%), Positives = 97/280 (34%), Gaps = 21/280 (7%) Query: 74 LISEYRKSAHWGS--LAVNSRISFESYFDQIIRKSGDFD--YRKITTKHIRSGVESRKHT 129 LI ++ W L+ N+ + ++I R+ + + + V Sbjct: 5 LIDRLLETL-WLDRRLSQNTLNGYRRDLEKIARRLSQSGRMLKDADEADLAAAVYVDGEQ 63 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---- 185 SS + L++ + L+ W R+ NP ++ PK T++ + + + Sbjct: 64 RSSQARALSACKRLYIWMEREGIRTDNPTRLLKPPKIDKNIPTLITEQQISRLLATPDTD 123 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG---- 240 G + + E + +GLR S++ + + I K V + Sbjct: 124 TPHGLRDKALLELMYATGLRVSEAVGLNFGSVDLDRGCITALGKGDKQRMVPMGQESAYW 183 Query: 241 ----FMKLLAMTPIGK--ETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFS 293 + + G+ + F++ K ++ + K A +AG+ S H +R Sbjct: 184 VGRYYTEARPALLKGRSCDALFVSQKKTGISRQLAWMIVKEYAGRAGIGHISPHSLRHAF 243 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 AT G + G ++ + YT A+ G+ Sbjct: 244 ATHLVQHGLDLRVVQDMLGHADLNTTQIYTHVANVWLQGV 283 >gi|256819226|ref|YP_003140505.1| tyrosine recombinase XerD [Capnocytophaga ochracea DSM 7271] gi|315224660|ref|ZP_07866483.1| tyrosine recombinase XerD [Capnocytophaga ochracea F0287] gi|256580809|gb|ACU91944.1| tyrosine recombinase XerD [Capnocytophaga ochracea DSM 7271] gi|314945288|gb|EFS97314.1| tyrosine recombinase XerD [Capnocytophaga ochracea F0287] Length = 303 Score = 127 bits (320), Expect = 2e-27, Method: Composition-based stats. Identities = 41/265 (15%), Positives = 92/265 (34%), Gaps = 26/265 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDF----DYRKITTKHIRSGVE--SRKHTPSSAIQFLT 138 L+ N+ +S+ +++I + I +R V S++ S + ++ Sbjct: 17 RGLSQNTVVSYGLDIEKLIGYLEKYNITEPPDTIQVDTLRQFVYEVSKELNARSQARLIS 76 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRL 194 +++ FK+ + ++ P ++ PK + + +++ + EG + + Sbjct: 77 ALKSFFKFMISEKGREDFPMSLIDSPKIGVKLPDTLSLKEIDAMLASIDLSTDEGHRNKA 136 Query: 195 AFEFLLYSGLRCSDSCRAGVQH--LQNNIFSIKTQKTGTIITVELP-----------DGF 241 E L GLR S+ + + + + K V + + Sbjct: 137 IIETLYGCGLRVSELVSLRLSDLFFEEDFIRVM-GKGSKQRLVPIESYTQKQINNYINNQ 195 Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299 K L + ++ F+N +++ + A G+ K S H R AT + Sbjct: 196 RKQLKIAKGHEDYVFLNRRGKQLTRAMIFTIVRQVAENIGLQKTISPHTFRHSFATHLLE 255 Query: 300 AGATAHELMATYGWKTVDQAETYTK 324 GA + G + + E Y Sbjct: 256 NGANLRAIQMMLGHENITTTEIYVH 280 >gi|283834576|ref|ZP_06354317.1| tyrosine recombinase XerC [Citrobacter youngae ATCC 29220] gi|291069704|gb|EFE07813.1| tyrosine recombinase XerC [Citrobacter youngae ATCC 29220] Length = 300 Score = 127 bits (320), Expect = 2e-27, Method: Composition-based stats. Identities = 42/259 (16%), Positives = 87/259 (33%), Gaps = 19/259 (7%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITT------KHIRSGVESRKHTPSSAIQFLT 138 L+ + ++++ D II +G+ + + + P+S L+ Sbjct: 21 RQLSPITLLNYQRQLDAIIALAGETGLQSWQQCDAAMVRSFAVRSRRKGLGPASLALRLS 80 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQPRLA 195 ++R F W V Q + NP SV PK + +D+ + + R Sbjct: 81 ALRSFFDWLVNQGELKANPAKSVSAPKAPRHLPKNIDVDDVNRLLDIDLNDPLAVRDRAM 140 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMKLLAMT------ 248 E + +GLR S+ ++HL + K + + + + Sbjct: 141 LEVMYGAGLRLSELVGLDIKHLDLDTGEVWVMGKGSKERRLPIGRNAVAWIEHWLDLRGL 200 Query: 249 -PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAH 305 + F++ ++++A F K G+N H +R AT ++ Sbjct: 201 FGGDDDALFLSKLGKRISARNVQKRFAEWGIKQGLNSHVHPHKLRHSFATHMLESSGDLR 260 Query: 306 ELMATYGWKTVDQAETYTK 324 + G + + YT Sbjct: 261 GVQELLGHANLSTTQIYTH 279 >gi|302035718|ref|YP_003796040.1| putative phage integrase [Candidatus Nitrospira defluvii] gi|300603782|emb|CBK40114.1| putative Phage integrase [Candidatus Nitrospira defluvii] Length = 346 Score = 127 bits (320), Expect = 2e-27, Method: Composition-based stats. Identities = 56/268 (20%), Positives = 99/268 (36%), Gaps = 12/268 (4%) Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125 K T ++ Y K + A SR E + G +IT K + + Sbjct: 44 AKDHTFNDMMDRYLKERS-ITKAPASRQRDEQCLAHLRDAFGPLTLAEITPKLLAAYKAK 102 Query: 126 RKHT--PSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 R+ T P++ + L +R F A+R+ E+ NP V + E R + E+ + Sbjct: 103 RRETTKPATVNKELGLVRHGFNVAIREWEWCRDNPMQRVCMETVRNERDRWISSEEEGRL 162 Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDG 240 + + Q + F L +G+R + Q + + + K G TV L Sbjct: 163 LANSAPWLQDMIVF--ALNTGMRRGEILNLQWQAVDLIRQVLVVMRSKNGEKRTVPLNGR 220 Query: 241 FMKLLAMTPI---GKETFFINNDKQKMNATQFSIWFKAKATKAG-VNKSAHGVRKFSATI 296 ++LL F + ++A + F+ A KA ++ H +R AT Sbjct: 221 LVELLRRKATMQAKGSFVFSSAASTLVDARNLTRSFRLAAKKAQLIDVRFHDLRHTFATR 280 Query: 297 SADAGATAHELMATYGWKTVDQAETYTK 324 A AG +++ G K+ + Y Sbjct: 281 LAQAGVDLYKVQRLLGHKSAAMTQRYAH 308 >gi|239947404|ref|ZP_04699157.1| integrase [Rickettsia endosymbiont of Ixodes scapularis] gi|239921680|gb|EER21704.1| integrase [Rickettsia endosymbiont of Ixodes scapularis] Length = 386 Score = 127 bits (320), Expect = 2e-27, Method: Composition-based stats. Identities = 50/305 (16%), Positives = 105/305 (34%), Gaps = 18/305 (5%) Query: 52 TGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDY 111 G P E ++ T K Y + + + + D+ + + Sbjct: 90 QGYNPIEEKARLSKEP--TFKEFYDRYL--DEYSKINNKRWKDYAASVDRYAKHLYNRKI 145 Query: 112 RKITTKHIRSGVESR-KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170 I I+ K A +FL +R +F A+ E + +NP + + + + ++ Sbjct: 146 STIQKADIQELFNKLTKTGKYGANRFLEILRPVFNKAIEWELIKVNPAIGITKHQEQSR- 204 Query: 171 IRPWTKEDMQQFKSFWSE--GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKT 226 R T+E++ QF + +E + F LY+ +R + + + + + Sbjct: 205 DRYLTREEIPQFFAAIAEEKNEVMKDFFLIALYTSVRKDNLLTMKWEQVSFTDKQLYLPE 264 Query: 227 QKTGTIITVELPDGFMKLLAMTPIGKET--FFINNDKQKMNATQFSIWFKAKATKAGV-N 283 K G ++ L D +++L + F + + + + KAG+ N Sbjct: 265 TKNGKPHSLPLLDQALEILKARKENSTSSWVFPSETSGSGHLQEPKKAWSRICEKAGIKN 324 Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343 H +R+ + A GA + + YT+ A+ + + Sbjct: 325 LRIHDLRRTVPSWMAMTGANQYVIGQLLNHMDPRSTAVYTRLAN-----DTAREYMQRAI 379 Query: 344 DSDDP 348 DS P Sbjct: 380 DSMIP 384 >gi|157157271|ref|YP_001461927.1| phage integrase family protein [Escherichia coli E24377A] gi|157079301|gb|ABV19009.1| phage integrase family [Escherichia coli E24377A] Length = 356 Score = 127 bits (320), Expect = 2e-27, Method: Composition-based stats. Identities = 61/343 (17%), Positives = 112/343 (32%), Gaps = 25/343 (7%) Query: 7 LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYM---SALTGSTPKREYINS 63 LPP + R+ Y G+ L A +G K Sbjct: 12 LPPNLY---IRNNGYYCYRDPRTGKEFGLGRDRRIAITEAIQTNIELFSGHKHKPLTARI 68 Query: 64 PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123 TL + Y K + + I++ S I R D ITTK I + + Sbjct: 69 NSDNSVTLHSWLDRYEKILASRGIKQKTLINYMSKIKAIRRGLPDAPLEDITTKEIAAML 128 Query: 124 ESRKH--TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 +SA +++ F+ A+ + ++ NP + K + R E ++ Sbjct: 129 NGYIDEGKAASAKLIRSTLSDAFREAIAEGHITTNPVAATRAAKSEVRRSRLTADEYLKI 188 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE----- 236 +++ S RLA E + +G R D C + + ++ KTG I + Sbjct: 189 YQAAESSPCWLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAIPTALHV 248 Query: 237 ----LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-----NKSAH 287 + +G ET + ++ +++ S +F +G+ + H Sbjct: 249 DALGISMKETLDKCKEILGGETIIASTRREPLSSGTVSRYFMRARKASGLSFEGDPPTFH 308 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 +R + + + G K+ A Y DR R Sbjct: 309 ELR-SLSARLYEKQISDKFAQHLLGHKSDTMASQY--RDDRGR 348 >gi|228922585|ref|ZP_04085885.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228837014|gb|EEM82355.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 299 Score = 127 bits (320), Expect = 2e-27, Method: Composition-based stats. Identities = 43/272 (15%), Positives = 97/272 (35%), Gaps = 26/272 (9%) Query: 85 GSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIRSGV---ESRKHTPSSAIQFLT 138 + + + S+++ + + + G + +T +R + K S + ++ Sbjct: 18 RNYSKYTIASYQNDLEHFVQFMEREGISSFLDVTYADVRLYLTTLHDEKLARKSVARKVS 77 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRL 194 S+R L+++ +R+ Y NP PK++ + E++++ G + + Sbjct: 78 SLRSLYRFLIREGYRKDNPFALASLPKKELSIPKFLYAEELEELFEVSDTETPLGQRNQA 137 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE------------LPDGF 241 E + +G+R S+ + + + +I K + + +G Sbjct: 138 LLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQRYIPFGSYAQDSLITYIENGR 197 Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299 +L+ T F+N + + KA + S H +R AT D Sbjct: 198 KQLVNKTDEDSHMVFLNAKGTPLTSRGVRYVLNEIIKKASLTMRISPHMLRHTFATHMLD 257 Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRL 331 GA + G + + + YT + RL Sbjct: 258 EGADLRTVQELLGHENLSTTQIYTH-VSKERL 288 >gi|293372135|ref|ZP_06618526.1| tyrosine recombinase XerC [Bacteroides ovatus SD CMC 3f] gi|292632927|gb|EFF51514.1| tyrosine recombinase XerC [Bacteroides ovatus SD CMC 3f] Length = 293 Score = 127 bits (320), Expect = 2e-27, Method: Composition-based stats. Identities = 51/276 (18%), Positives = 102/276 (36%), Gaps = 24/276 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIR----KSGDFDYRKITTKHIRSGV---ES 125 LI + + + + + +++ Q+ + G FD ++ + IR + Sbjct: 2 LIESFLDYLQYERNYSEKTVLAYGEDIKQLQEFAQEEYGKFDPLEVEAELIREWIVSLMD 61 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + +T +S + L+S+R +K+ +RQ I+P ++ PK K + +M + Sbjct: 62 KGYTSTSVNRKLSSLRTFYKYLIRQGETTIDPLRKIKGPKNKKPLPVFLKENEMNRLLDD 121 Query: 186 WS-----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPD 239 +G + RL E +G+R S+ + + + +K T K + D Sbjct: 122 TDFGQGFKGCRDRLVIEVFYATGMRLSELIGLDDKDVDFSASLLKVTGKRNKQRLIPFGD 181 Query: 240 GFMKLL--------AMTPIGKETFFINNDKQKMNATQFSIWFKA--KATKAGVNKSAHGV 289 +L+ P E FFI + +++ K KS H + Sbjct: 182 ELQELMLEYINVRNETIPERSEAFFIRENGERLYKNLVYNLVKRNLSKVVTLKKKSPHVL 241 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 R AT + A + G +++ E YT Sbjct: 242 RHTFATTMLNNEAELGAVKELLGHESITTTEIYTHA 277 >gi|167754410|ref|ZP_02426537.1| hypothetical protein ALIPUT_02704 [Alistipes putredinis DSM 17216] gi|167659035|gb|EDS03165.1| hypothetical protein ALIPUT_02704 [Alistipes putredinis DSM 17216] Length = 379 Score = 127 bits (320), Expect = 2e-27, Method: Composition-based stats. Identities = 45/224 (20%), Positives = 75/224 (33%), Gaps = 13/224 (5%) Query: 121 SGVESRKHTPSSAIQFLT---SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177 + K P S ++ +R A + INP VE K + T E Sbjct: 154 DERDRIKDHPLSRNSRVSYFNKLRACLNQAYEDRIIPINPMRGVEGFKAEEGTRMYLTIE 213 Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQKTGTII 233 ++Q+ E + AF F +GLR SD R + K +KT Sbjct: 214 EVQRLAQTECEYPAIKRAFLFSCLTGLRRSDVIRLTWGDVHQQGEFTRIIFKQKKTSGQE 273 Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRK 291 +++P +L+ E F N K +AG++K + H R Sbjct: 274 YLDIPPQAAELMGERGKDAEHIFPNIHSPSCTNET----IKRWVLRAGIHKDITFHCGRH 329 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335 A + D G + + G + + + Y K D+ + Sbjct: 330 TFAVMMLDLGTDIYTVSKLLGHRELSTTQIYAKVLDKNKQAAVA 373 >gi|57234018|ref|YP_181928.1| tyrosine recombinase XerD [Dehalococcoides ethenogenes 195] gi|57224466|gb|AAW39523.1| tyrosine recombinase XerD [Dehalococcoides ethenogenes 195] Length = 302 Score = 127 bits (320), Expect = 2e-27, Method: Composition-based stats. Identities = 40/283 (14%), Positives = 96/283 (33%), Gaps = 35/283 (12%) Query: 85 GSLAVNSRISFESYFDQI-------IRKSGDFD-YRKITTKHIRSGVESRKHT---PSSA 133 + N+ ++E+ Q+ KSG + T + + + + K ++ Sbjct: 16 KGFSENTTEAYENDLRQMMTFADKEAAKSGKIPGWENFTRQTMLAYMLDLKERNYAITTV 75 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-----SE 188 ++ + + + F + V + + NP ++ PK + ++ + SE Sbjct: 76 VRKMAAAKSFFNFMVAEGKLKENPTENISTPKVGKPLPDAISISQVRALLNQPVKSGSSE 135 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLA- 246 + + E L SG+R ++ V + ++ K + + + + Sbjct: 136 AKRDKAMLELLYASGMRVTELVNLNVLDVDLKEGFVRCFGKGRKERMIPIYPQAAQSIQE 195 Query: 247 ---------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSAT 295 + ++ F+N ++ K A +AG++ + H +R AT Sbjct: 196 YLTEIRPNLVRAETEKALFLNRRGDRLTRQGLWQILKGYAREAGLDDVVTPHTLRHSFAT 255 Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRR 338 GA + G + + YT L ++ +R Sbjct: 256 HMLSGGADLRSVQELLGHANISTTQIYTH------LTSEHIKR 292 >gi|254437230|ref|ZP_05050724.1| site-specific recombinase, phage integrase family protein [Octadecabacter antarcticus 307] gi|198252676|gb|EDY76990.1| site-specific recombinase, phage integrase family protein [Octadecabacter antarcticus 307] Length = 397 Score = 127 bits (320), Expect = 2e-27, Method: Composition-based stats. Identities = 50/296 (16%), Positives = 104/296 (35%), Gaps = 22/296 (7%) Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR-KSGDFDYRKITTKHIRSGVE 124 ++ +T+ L + + ++ ++ + I+ G F + K I + Sbjct: 94 RRASTVGALCDRFLEVHVLERCKPSTAAEYKRGLNIFIKPALGAFKVVDVKRKDIAAIHH 153 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAI--NPCLSVERPK-RKTEGIRPWTKEDMQQ 181 K TP A + L + +F A NPC V + + K E ++ ++Q+ Sbjct: 154 KMKETPYQANRVLGVLSKMFNLAEVWGLRPDGSNPCRHVPKYRELKREAF--LSQSELQR 211 Query: 182 FKSFW-------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT 234 + SE AF L+ +G R + ++L + KTG Sbjct: 212 LGATLAACELDGSESPYIVAAFRLLILTGCRLGEIQTLKWEYLTAKRMELPDTKTGAR-R 270 Query: 235 VELPDGFMKLLAMTP--IGKETFFINN-DKQKMNATQFSIWFKAKATKAGVNKS-AHGVR 290 + LP +LA P +G + + + ++ +AG+ + H +R Sbjct: 271 IPLPKAARDVLAALPRVVGNPYVVCGAVEGRHIT--DLQHPWRRVRERAGLPHTRIHDLR 328 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGAD--RIRLGIKNSRRISSVVD 344 A+ + +G + G + Y AD ++ +N+ + S + Sbjct: 329 HTYASNAVSSGMPIQMVGKLLGHTQIQTTMRYAHLADDPVLKAAEENASSLQSALG 384 >gi|189219127|ref|YP_001939768.1| Site-specific recombinase XerD [Methylacidiphilum infernorum V4] gi|189185985|gb|ACD83170.1| Site-specific recombinase XerD [Methylacidiphilum infernorum V4] Length = 315 Score = 127 bits (320), Expect = 2e-27, Method: Composition-based stats. Identities = 48/272 (17%), Positives = 96/272 (35%), Gaps = 23/272 (8%) Query: 88 AVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGVE---SRKHTPSSAIQFLTSMRV 142 A+N+++ + ++ + S + + HI ++ R + SS + ++R Sbjct: 28 AINTQLLYRQILEKFLDWVLSHKLSIGSVRSSHIELFLDEERKRGLSDSSIKITIIALRH 87 Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAFEF 198 LF++ Q + NP E P ++ + T +++++ G + + E Sbjct: 88 LFEYLKEQNKIKTNPLDHKELPSIQSRLPQFLTTKEIEKLLQAPFPDTPLGWRDKAILEL 147 Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGKET--- 254 L SGLR S+ ++ F IK K V + + L T Sbjct: 148 LYSSGLRVSELISLKLESYYPEHFQIKVLGKGNKERAVPIGKCAKEALDKYIAEGRTKLL 207 Query: 255 -------FFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAH 305 F+N Q + ++ A G++K H +R A+ + GA Sbjct: 208 AKKTRGEVFLNQRGQPLTRSRIRQLIIHYARLGGIDKKVYPHLLRHTFASHLVENGADLR 267 Query: 306 ELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 + G + + YT + L + R Sbjct: 268 VIQELLGHANIATTQIYTH-VNLKHLKEIHRR 298 >gi|59800775|ref|YP_207487.1| hypothetical protein NGO0329 [Neisseria gonorrhoeae FA 1090] gi|194098059|ref|YP_002001107.1| XerD [Neisseria gonorrhoeae NCCP11945] gi|239998519|ref|ZP_04718443.1| XerD [Neisseria gonorrhoeae 35/02] gi|240013644|ref|ZP_04720557.1| XerD [Neisseria gonorrhoeae DGI18] gi|240016083|ref|ZP_04722623.1| XerD [Neisseria gonorrhoeae FA6140] gi|240117462|ref|ZP_04731524.1| XerD [Neisseria gonorrhoeae PID1] gi|240120714|ref|ZP_04733676.1| XerD [Neisseria gonorrhoeae PID24-1] gi|240123018|ref|ZP_04735974.1| XerD [Neisseria gonorrhoeae PID332] gi|240125270|ref|ZP_04738156.1| XerD [Neisseria gonorrhoeae SK-92-679] gi|240127724|ref|ZP_04740385.1| XerD [Neisseria gonorrhoeae SK-93-1035] gi|268594379|ref|ZP_06128546.1| tyrosine recombinase xerD [Neisseria gonorrhoeae 35/02] gi|268603162|ref|ZP_06137329.1| tyrosine recombinase xerD [Neisseria gonorrhoeae PID1] gi|268681643|ref|ZP_06148505.1| tyrosine recombinase xerD [Neisseria gonorrhoeae PID332] gi|268683870|ref|ZP_06150732.1| tyrosine recombinase xerD [Neisseria gonorrhoeae SK-92-679] gi|268686113|ref|ZP_06152975.1| tyrosine recombinase xerD [Neisseria gonorrhoeae SK-93-1035] gi|293399522|ref|ZP_06643675.1| tyrosine recombinase XerD [Neisseria gonorrhoeae F62] gi|59717670|gb|AAW89075.1| putative integrase/recombinase [Neisseria gonorrhoeae FA 1090] gi|193933349|gb|ACF29173.1| XerD [Neisseria gonorrhoeae NCCP11945] gi|268547768|gb|EEZ43186.1| tyrosine recombinase xerD [Neisseria gonorrhoeae 35/02] gi|268587293|gb|EEZ51969.1| tyrosine recombinase xerD [Neisseria gonorrhoeae PID1] gi|268621927|gb|EEZ54327.1| tyrosine recombinase xerD [Neisseria gonorrhoeae PID332] gi|268624154|gb|EEZ56554.1| tyrosine recombinase xerD [Neisseria gonorrhoeae SK-92-679] gi|268626397|gb|EEZ58797.1| tyrosine recombinase xerD [Neisseria gonorrhoeae SK-93-1035] gi|291610091|gb|EFF39213.1| tyrosine recombinase XerD [Neisseria gonorrhoeae F62] gi|317163795|gb|ADV07336.1| hypothetical protein NGTW08_0364 [Neisseria gonorrhoeae TCDC-NG08107] Length = 291 Score = 127 bits (320), Expect = 2e-27, Method: Composition-based stats. Identities = 45/263 (17%), Positives = 93/263 (35%), Gaps = 18/263 (6%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRKHTPSSAIQFLTSMRV 142 L+ N+ S+ ++I R+ + + + V SS + L++ + Sbjct: 17 RRLSRNTLDSYRRDLEKIARRLSLCGRTLKDADEADLAAAVYVDGEQRSSQARALSACKR 76 Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAFEF 198 L+ W R+ A NP ++ PK T++ + + + G + + E Sbjct: 77 LYVWMEREGMRADNPTRLLKPPKIDRNIPTLITEQQISRLLAAPDTDTPHGLRDKALLEL 136 Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG----------FMKLLAM 247 + +GLR S++ ++ + I T K V + + L + Sbjct: 137 MYATGLRVSEAVGLNFGNVDLDRGCITTLGKGDKQRMVPMGQESAYWVERYYTEARPLLL 196 Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHE 306 + F++ K ++ + K A +AG+ S H +R AT G Sbjct: 197 KGRSCDALFVSQKKTGISRQLAWMIVKEYAGRAGIGHISPHSLRHAFATHLVRHGLDLRV 256 Query: 307 LMATYGWKTVDQAETYTKGADRI 329 + G ++ + YT A+ Sbjct: 257 VQDMLGHADLNTTQIYTHVANVR 279 >gi|311739368|ref|ZP_07713203.1| tyrosine recombinase XerD [Corynebacterium pseudogenitalium ATCC 33035] gi|311305184|gb|EFQ81252.1| tyrosine recombinase XerD [Corynebacterium pseudogenitalium ATCC 33035] Length = 296 Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats. Identities = 50/260 (19%), Positives = 91/260 (35%), Gaps = 20/260 (7%) Query: 90 NSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS--SAIQFLTSMRVLFKWA 147 N R Y + G D R +T + + ++ + + SA + L R L K+A Sbjct: 28 NYRRDVRRYLSWLGDN-GVEDLRSVTRPMVEAYLKDLRSHMAVSSANRALIVARGLHKFA 86 Query: 148 VRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSG 203 V + V ++ + V P + + +++ + + R E L +G Sbjct: 87 VSEGVVDVDVAVEVTPPSTGQQLPETLSVDEVTALIEATPTETPVDVRDRALLEMLYGTG 146 Query: 204 LRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------ELPDGFMKLLAMTPIGK-E 253 R S+ V + + I+ + G + L ++ GK Sbjct: 147 ARISEIVSLNVDDVSSAQEVIRLRGKGDKERIVPVGSHARQALDAYLVRARPALSKGKTP 206 Query: 254 TFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMATY 311 F+N ++ K A +A + KS H +R AT + GA + Sbjct: 207 ALFLNTRGGALSRQSAWTVLKTAAQRAQLGKSISPHTLRHSFATHLLEGGADVRTVQELL 266 Query: 312 GWKTVDQAETYTK-GADRIR 330 G +V + YT AD +R Sbjct: 267 GHSSVTTTQIYTHVTADSLR 286 >gi|157827404|ref|YP_001496468.1| integrase [Rickettsia bellii OSU 85-389] gi|157802708|gb|ABV79431.1| Integrase [Rickettsia bellii OSU 85-389] Length = 381 Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats. Identities = 47/283 (16%), Positives = 102/283 (36%), Gaps = 13/283 (4%) Query: 52 TGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDY 111 G P E ++ T K Y + + + + D+ + + Sbjct: 83 QGYNPIEEKARLSKEP--TFKEFYDRYL--DEYSKINNKRWKDYAASVDRYAKHLYNRKI 138 Query: 112 RKITTKHIRSGVESR-KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170 I I+ K A +FL + +F A+ E + +NP + +++ K ++ Sbjct: 139 STIQKADIQELFNKLTKTGKYGANRFLEVLSPVFSKAIEWELLTVNPVIGIKKHKEQSR- 197 Query: 171 IRPWTKEDMQQFKSFWSE--GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKT 226 R T+E++ +F + SE + F LY+ +R + + + + + Sbjct: 198 DRYLTREEIPRFFTAISEEQNQVMKDFFLIALYTSVRKDNVLTMRWEQISFADKQLYLPD 257 Query: 227 QKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMN--ATQFSIWFKAKATKAGV-N 283 K G + L D +++L ++ ++ + + + +K KAG+ N Sbjct: 258 TKNGDPHRLPLLDQAVEILKARKEQSDSIWVFPSETSSSGHLQEPKKAWKRICKKAGIEN 317 Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 H +R+ + A GA + + + YT+ A Sbjct: 318 LRIHDLRRTIPSWMAMTGANQYVIGQLLNHRDPRSTAVYTRLA 360 >gi|282892593|ref|ZP_06300866.1| hypothetical protein pah_c272o032 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281497717|gb|EFB40086.1| hypothetical protein pah_c272o032 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 369 Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats. Identities = 51/277 (18%), Positives = 96/277 (34%), Gaps = 19/277 (6%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT-------TKHIRSG 122 TL LI Y + + + D K G + KI+ + + G Sbjct: 68 TLIDLIDRYETII--LPTKPKDARNMKRHLDWWRNKIGKYGLTKISSDLIAQCRQELAEG 125 Query: 123 VESRKHTPSSA--IQFLTSMRVLFKWAV-RQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179 V S+K S A ++L ++ +F + + ++ NPC V + R + + Sbjct: 126 VTSKKTKRSHATVNRYLATLSTVFTYGINECGWITDNPCRRVSKFTESKGRDRIVAENEF 185 Query: 180 QQFKSFWSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQKTGTIITV 235 + L + +G+R + +L +K K G TV Sbjct: 186 TRLFEECKNSRNEHLLPVVVLAVTTGMRRGEILGLTWDCINLDRQTIILKETKNGKQRTV 245 Query: 236 ELPDGFMKLLAM--TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKF 292 + ++LL T ++ K++ + +AG+ N H +R Sbjct: 246 SIVGEALELLRSHYQKRNPNTPYVFPAKKRFGKICIRKAWDEALKRAGIQNLRIHDLRHT 305 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 T +++ GA+ EL A G +T+ YT + Sbjct: 306 FCTYASETGASILELAAAMGHQTLQMVNRYTHMNQKK 342 >gi|161521411|ref|YP_001584838.1| integrase family protein [Burkholderia multivorans ATCC 17616] gi|160345461|gb|ABX18546.1| integrase family protein [Burkholderia multivorans ATCC 17616] Length = 368 Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats. Identities = 60/373 (16%), Positives = 113/373 (30%), Gaps = 56/373 (15%) Query: 1 MTPSLRLPPFVTKERTRHGKIIYYFRKGHGR----RIRLPYPHESTFIPAYMSALTGSTP 56 M R P F+ ++ K R+R + Y A Sbjct: 1 MIGRRRSPSFLPARVYEKHGSWWFVDKNRKWHKLCRVRDGIVRLYESLAEYTRA------ 54 Query: 57 KREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF-DYRKIT 115 +S T+ LI ++ + + A +R ++ I ++ G + Sbjct: 55 ----SDSAAALDNTMPALIDDWMR-KKLPAYAPKTRANYVKMIGLIRKEFGPQWLIEDVR 109 Query: 116 TKHIRSGVES-RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174 + ++ PSS+ + + ++F AVR+ NP V K + + R Sbjct: 110 PADVARFLDKHFHDKPSSSNKHKALLSLIFMHAVRRGLCDGNPAREVGAAK-ERKRDRYI 168 Query: 175 TKEDMQQFKSFWSEG-----SQPRLAF---EFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226 T +++ ++ G S R + + R D Q++ + S Sbjct: 169 TDDELDAVRAAIVAGADYKTSSARSILCLVDLAYQTAQRIGDLLALNWQNVSDEGISFHP 228 Query: 227 QKT----GTIITVELPDGFMKLLAMTPIGKET----FFINNDKQKMNATQFSIWFKAKAT 278 KT G + +E+ + L GK T + + +K Sbjct: 229 SKTVNSSGVRLLIEMTPDLRETLDRARGGKVTAIGPVICTHTGGRFTYIGAYSAWKRACE 288 Query: 279 KA-----------GV--------NKSAHGVRKFSATIS-ADAGATAHELMATYGWKTVDQ 318 +A G+ H +R + T GA A + + G T Sbjct: 289 RARSTYEKECAKKGIEPNPLYLTGMHFHDLRAKALTDLKRQRGAAAAQ--SLAGHTTESM 346 Query: 319 AETYTKGADRIRL 331 YTK + R+ Sbjct: 347 TAHYTKAREVERV 359 >gi|204930199|ref|ZP_03221176.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|204320603|gb|EDZ05805.1| tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|322613026|gb|EFY09977.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322617386|gb|EFY14286.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322625622|gb|EFY22444.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322627045|gb|EFY23838.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322631239|gb|EFY28002.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322638272|gb|EFY34971.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322642792|gb|EFY39379.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322646966|gb|EFY43468.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322650353|gb|EFY46766.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322656356|gb|EFY52650.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322657581|gb|EFY53851.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322665992|gb|EFY62173.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322666731|gb|EFY62908.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322671026|gb|EFY67156.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322679267|gb|EFY75319.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322681671|gb|EFY77698.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322686002|gb|EFY81990.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323192628|gb|EFZ77856.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323196494|gb|EFZ81644.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323203754|gb|EFZ88775.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323205371|gb|EFZ90345.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323210740|gb|EFZ95616.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323215908|gb|EGA00641.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323221401|gb|EGA05819.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323227581|gb|EGA11737.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323231766|gb|EGA15877.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323236181|gb|EGA20258.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323239582|gb|EGA23630.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323244322|gb|EGA28330.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323249581|gb|EGA33493.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323250327|gb|EGA34213.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323256534|gb|EGA40265.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323259768|gb|EGA43401.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323265176|gb|EGA48674.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323268395|gb|EGA51867.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 300 Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats. Identities = 43/259 (16%), Positives = 89/259 (34%), Gaps = 19/259 (7%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITT------KHIRSGVESRKHTPSSAIQFLT 138 L+ + +++ D II +G+ + + + +S L+ Sbjct: 21 RQLSPITLQNYQRQLDAIIALAGETGLKSWQQCDAAIVRSFAVRSRRKGLGSASLALRLS 80 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQPRLA 195 ++R F W V Q + NP V PK + +D+ + + R Sbjct: 81 ALRSFFDWLVSQGELKANPAKGVSAPKAPRHLPKNIDVDDVNRLLDIDLNDPLAVRDRAM 140 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT--------VELPDGFMKLLAM 247 E + +GLR S+ ++HL + + G+ V + ++ L + Sbjct: 141 LEVMYGAGLRLSELVGLDIKHLDLDTGEVWVMGKGSKERRLPIGRNAVTWIEHWLDLRGL 200 Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAH 305 +E F++ ++++A F K G+N H +R AT ++ Sbjct: 201 FASDEEALFLSKLGKRISARNVQKRFAEWGIKQGLNSHVHPHKLRHSFATHMLESSGDLR 260 Query: 306 ELMATYGWKTVDQAETYTK 324 + G + + YT Sbjct: 261 GVQELLGHANLSTTQIYTH 279 >gi|325962900|ref|YP_004240806.1| tyrosine recombinase XerD [Arthrobacter phenanthrenivorans Sphe3] gi|323468987|gb|ADX72672.1| tyrosine recombinase XerD [Arthrobacter phenanthrenivorans Sphe3] Length = 334 Score = 127 bits (319), Expect = 3e-27, Method: Composition-based stats. Identities = 56/284 (19%), Positives = 97/284 (34%), Gaps = 35/284 (12%) Query: 75 ISEYRKSAH-WGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKHT- 129 I++Y + LA N+ ++ + R G + IT H+ V + Sbjct: 31 ITDYLQHMGVERGLAANTLSAYRRDLARYSRYLAAQGCSSPQDITRHHVTGYVRALSDGS 90 Query: 130 -------PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 SA + + ++R L K+ + Y +P V P + + +++ + Sbjct: 91 DGGSALGVRSAARTVVAVRGLHKFWALEGYTPADPASEVHPPMPGKRLPKAISVDEVTRI 150 Query: 183 KSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT------QKTGTI 232 + G + R EFL +G R S++ V + + K Sbjct: 151 LEAAGTDTATGLRDRALLEFLYSTGARISEAVGLDVDDISLDTGESGPAIVRLFGKGSKE 210 Query: 233 ITVEL-------PDGF----MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281 V L D + LLA G F+N +++ KA A KA Sbjct: 211 RLVPLGSYGARALDAYLVRGRPLLAAKGKGTPALFLNARGGRISRQSAWTILKAAAGKAQ 270 Query: 282 VNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 + K S H +R AT + GA + G +V + YT Sbjct: 271 ITKDVSPHTLRHSFATHLLEGGADVRVVQELLGHASVTTTQVYT 314 >gi|85059013|ref|YP_454715.1| putative phage integrase [Sodalis glossinidius str. 'morsitans'] gi|84779533|dbj|BAE74310.1| putative phage integrase [Sodalis glossinidius str. 'morsitans'] Length = 311 Score = 127 bits (319), Expect = 3e-27, Method: Composition-based stats. Identities = 41/233 (17%), Positives = 85/233 (36%), Gaps = 16/233 (6%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK-H 128 T L + + SA++ L ++ + + +++ G I +H+R+ ++ R Sbjct: 64 TFAQLWTYFLDSAYFSELKPRTQKDYLQHQKKLLAVFGKVSVNSIKPEHVRTFMDKRGLQ 123 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 + + A + SM +++W + YV NPC V + K R T ++ + Sbjct: 124 SKTQANYEMESMSRVYRWGYERGYVKSNPCAGVMKFKAVKR-DRYITDDEYLAIYQAADK 182 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG---TIITVELPDGFMKLL 245 + A E R SD Q + I+ ++TG + ++L Sbjct: 183 --VVKAAMEIAYLCAARLSDVLDMKWQQVTEKGIFIQQRETGIKQIKVWTPRLREAIELA 240 Query: 246 AMTPIGKET---FFINNDKQKMNATQFSIWFKAKATKAG------VNKSAHGV 289 K+T + K + FS + +KA ++ + H + Sbjct: 241 RSVFTSKQTDTPVIMGQHKGHYSKRGFSNRWMEARSKASGQLGYELDFTLHDL 293 >gi|224370397|ref|YP_002604561.1| tyrosine recombinase XerD [Desulfobacterium autotrophicum HRM2] gi|223693114|gb|ACN16397.1| tyrosine recombinase XerD [Desulfobacterium autotrophicum HRM2] Length = 295 Score = 127 bits (319), Expect = 3e-27, Method: Composition-based stats. Identities = 47/291 (16%), Positives = 87/291 (29%), Gaps = 27/291 (9%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV------E 124 LI Y LA NS S+ + + E Sbjct: 2 DRLIDRYMAHLTLERGLAQNSLTSYAMDLATFADFLETNQISALDQVDTVVILAWLVHLE 61 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 ++ +P S + L ++R +++ + NP ++ PK T R +++ + Sbjct: 62 AKGLSPRSRARHLIAVRGFYRFLALENLTRSNPLRLIDIPKAGTRLPRFLSQDQVTALLE 121 Query: 185 FWSEGSQPRL----AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV----- 235 + L E L +GLR S+ + + ++ G+ + Sbjct: 122 MPDRTTHRGLRNAAMLEILYGAGLRVSELVGLKTEQVDLVACFVRLFGKGSRERIVPFGS 181 Query: 236 -------ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSA 286 E + + + F+ M F K A AG+ S Sbjct: 182 HARQRTMEWLEWGRPWM-LKKNASRYLFVARAGNPMTRQGFWKLLKKYALGAGISIKVSP 240 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 H +R AT + GA + G + + YT R L + + Sbjct: 241 HTLRHSFATHLLEGGADLRSVQTMLGHADIASTQIYTH-VSRQYLVDMHKK 290 >gi|163736786|ref|ZP_02144204.1| hypothetical protein RGBS107_01548 [Phaeobacter gallaeciensis BS107] gi|161389390|gb|EDQ13741.1| hypothetical protein RGBS107_01548 [Phaeobacter gallaeciensis BS107] Length = 157 Score = 127 bits (319), Expect = 3e-27, Method: Composition-based stats. Identities = 32/129 (24%), Positives = 56/129 (43%), Gaps = 4/129 (3%) Query: 212 AGVQHLQNNIFSIKTQKTGTIITVELP--DGFMKLLAMTPIGKETFFINNDKQKMNATQF 269 G +++ ++ + KTG + L + + P F +++ + F Sbjct: 1 MGRHNIKGDVIYYRRGKTGQDTELPLAYMPNLVAEIVQLPPDASVFLTHSNGKTYTVESF 60 Query: 270 SIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 WF+ + AG+ N AHG+RK AT A+AGA ++MA K+ +A Y + A Sbjct: 61 GNWFRDQCVAAGLPDNCRAHGLRKHGATELAEAGANEFQIMAFLAHKSTHEALRYVRAAQ 120 Query: 328 RIRLGIKNS 336 R +L Sbjct: 121 RKKLASDAL 129 >gi|240080225|ref|ZP_04724768.1| XerD [Neisseria gonorrhoeae FA19] gi|240112438|ref|ZP_04726928.1| XerD [Neisseria gonorrhoeae MS11] gi|240115178|ref|ZP_04729240.1| XerD [Neisseria gonorrhoeae PID18] gi|254493240|ref|ZP_05106411.1| tyrosine recombinase xerD [Neisseria gonorrhoeae 1291] gi|260441004|ref|ZP_05794820.1| XerD [Neisseria gonorrhoeae DGI2] gi|268596375|ref|ZP_06130542.1| tyrosine recombinase xerD [Neisseria gonorrhoeae FA19] gi|268598504|ref|ZP_06132671.1| tyrosine recombinase xerD [Neisseria gonorrhoeae MS11] gi|268600856|ref|ZP_06135023.1| tyrosine recombinase xerD [Neisseria gonorrhoeae PID18] gi|291044335|ref|ZP_06570044.1| tyrosine recombinase xerD [Neisseria gonorrhoeae DGI2] gi|226512280|gb|EEH61625.1| tyrosine recombinase xerD [Neisseria gonorrhoeae 1291] gi|268550163|gb|EEZ45182.1| tyrosine recombinase xerD [Neisseria gonorrhoeae FA19] gi|268582635|gb|EEZ47311.1| tyrosine recombinase xerD [Neisseria gonorrhoeae MS11] gi|268584987|gb|EEZ49663.1| tyrosine recombinase xerD [Neisseria gonorrhoeae PID18] gi|291011229|gb|EFE03225.1| tyrosine recombinase xerD [Neisseria gonorrhoeae DGI2] Length = 291 Score = 127 bits (318), Expect = 3e-27, Method: Composition-based stats. Identities = 44/263 (16%), Positives = 92/263 (34%), Gaps = 18/263 (6%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRKHTPSSAIQFLTSMRV 142 L+ N+ S+ ++I R+ + + + V S + L++ + Sbjct: 17 RRLSRNTLDSYRRDLEKIARRLSLCGRTLKDADEADLAAAVYVDGEQRGSQARALSACKR 76 Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAFEF 198 L+ W R+ A NP ++ PK T++ + + + G + + E Sbjct: 77 LYVWMEREGMRADNPTRLLKPPKIDRNIPTLITEQQISRLLAAPDTDTPHGLRDKALLEL 136 Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG----------FMKLLAM 247 + +GLR S++ ++ + I T K V + + L + Sbjct: 137 MYATGLRVSEAVGLNFGNVDLDRGCITTLGKGDKQRMVPMGQESAYWVERYYTEARPLLL 196 Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHE 306 + F++ K ++ + K A +AG+ S H +R AT G Sbjct: 197 KGRSCDALFVSQKKTGISRQLAWMIVKEYAGRAGIGHISPHSLRHAFATHLVRHGLDLRV 256 Query: 307 LMATYGWKTVDQAETYTKGADRI 329 + G ++ + YT A+ Sbjct: 257 VQDMLGHADLNTTQIYTHVANVR 279 >gi|297571450|ref|YP_003697224.1| tyrosine recombinase XerD [Arcanobacterium haemolyticum DSM 20595] gi|296931797|gb|ADH92605.1| tyrosine recombinase XerD [Arcanobacterium haemolyticum DSM 20595] Length = 310 Score = 127 bits (318), Expect = 3e-27, Method: Composition-based stats. Identities = 49/286 (17%), Positives = 97/286 (33%), Gaps = 30/286 (10%) Query: 69 TTLKWLISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFDYR---KITTKHIRSGVE 124 + +Y SL+ N+ ++ I+ + S VE Sbjct: 5 GEFDRALRDYVAHLGIERSLSDNTLGAYRRDLTHYKEHLELRSVASLAAISPEDAASFVE 64 Query: 125 SRKHTPS-------SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177 + + S + +T++R ++ + + + + PK + T Sbjct: 65 YLRDGSAGSVMATSSVARMVTAVRRFHEFLLAEGITTTDASADLHPPKIGMRLPKAITIP 124 Query: 178 DMQQFKSFWSEG-----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232 +M+Q + + G ++ R E L +G R S+ V + +I+ G Sbjct: 125 EMEQLLAVVARGDDAISTRDRALLEILYGTGARISEVVGLTVDDMSCENATIRLFGKGRK 184 Query: 233 ITV-------------ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK 279 + L G +L+A + +FF+N + ++ +A A + Sbjct: 185 ERILPLGTYAIEAIRAYLNHGRTELVARSAAPTSSFFLNKRGKTLSRQSAWGVIQAVAEE 244 Query: 280 AGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 AG+ + S H R AT GA + G +V + YTK Sbjct: 245 AGLTDISPHTFRHSFATHLLQGGADVRVVQEMLGHSSVTTTQIYTK 290 >gi|146313613|ref|YP_001178687.1| site-specific tyrosine recombinase XerC [Enterobacter sp. 638] gi|145320489|gb|ABP62636.1| tyrosine recombinase XerC subunit [Enterobacter sp. 638] Length = 300 Score = 127 bits (318), Expect = 3e-27, Method: Composition-based stats. Identities = 41/259 (15%), Positives = 88/259 (33%), Gaps = 19/259 (7%) Query: 85 GSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSGV---ESRKHTPSSAIQFLT 138 L+ + ++++ D I + G + +R+ V + P+S L+ Sbjct: 21 RQLSPITLLNYQRQLDAIMQLAEEIGLKSWPLCDAATVRALVVRSRRKGLGPASLALRLS 80 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQPRLA 195 ++R F W V Q + NP + PK + +D+ + + + R Sbjct: 81 ALRSFFDWLVSQGELNANPAKGISTPKAPRHLPKNIDVDDVNRLLNIDLNDPLAVRDRAM 140 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMKLLAMT------ 248 E + +GLR S+ ++HL + K + + + + Sbjct: 141 LEVMYGAGLRLSELVNLDLKHLDLDTGEVWVMGKGSKERRLPIGRNAVAWIEHWLDLRGL 200 Query: 249 -PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAH 305 + F++ ++++A F K G+N H +R AT ++ Sbjct: 201 FGAEENALFLSKLGKRISARNVQKRFAEWGIKQGLNSHVHPHKLRHSFATHMLESSGDLR 260 Query: 306 ELMATYGWKTVDQAETYTK 324 + G + + YT Sbjct: 261 GVQELLGHANLSTTQIYTH 279 >gi|300024678|ref|YP_003757289.1| tyrosine recombinase XerD [Hyphomicrobium denitrificans ATCC 51888] gi|299526499|gb|ADJ24968.1| tyrosine recombinase XerD [Hyphomicrobium denitrificans ATCC 51888] Length = 309 Score = 127 bits (318), Expect = 3e-27, Method: Composition-based stats. Identities = 46/280 (16%), Positives = 98/280 (35%), Gaps = 30/280 (10%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKI-----TTKHIRSGVESRKHTPSSAIQFLTS 139 + N+ ++ + + D + + + + + P+S + L++ Sbjct: 22 RGASPNTIEAYRGDLEGFLDYLSDGSVAPLSVGTQNIQGYIAAMANAGQAPTSRSRRLSA 81 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS---FWSEGSQPRLAF 196 ++ +++ + + +P ++ PK++ + + ++ + EG + R F Sbjct: 82 IKQYYRFLFAEGLIGADPTSGLQGPKKQRSLPKVLSIAEVDRLLDASQKRCEGVEGRAMF 141 Query: 197 ---------EFLLYSGLRCSDSCRAGVQHLQNN--IFSIKTQKTGTIITVELPDGFMKLL 245 E L +G+R S+ L+ + +FSIK K G V L L Sbjct: 142 RALRFHCLLELLYATGMRVSELVGLPRTVLRGDKRVFSIK-GKGGRERLVPLNAEARAAL 200 Query: 246 AM----TPIGKETFFINNDK---QKMNATQFSIWFKAKATKAGVNK---SAHGVRKFSAT 295 + + ++ K M +F+ K A +AG+ S H +R A+ Sbjct: 201 DRFLEVSGRFDNSPWLFPSKSASGHMTRQRFAQDLKDVAAEAGIGGDRISPHVLRHAFAS 260 Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335 D GA + G + E YT + N Sbjct: 261 HLLDRGADLRTVQQLLGHADISTTEIYTHVLQERLKALVN 300 >gi|228992559|ref|ZP_04152486.1| Tyrosine recombinase xerC [Bacillus pseudomycoides DSM 12442] gi|228767193|gb|EEM15829.1| Tyrosine recombinase xerC [Bacillus pseudomycoides DSM 12442] Length = 302 Score = 127 bits (318), Expect = 3e-27, Method: Composition-based stats. Identities = 43/272 (15%), Positives = 97/272 (35%), Gaps = 26/272 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKSGD------FDYRKITTKHIRSGVESRKHTPSSAIQFLT 138 + + + S+++ + ++ D + + + + K S + ++ Sbjct: 21 RNYSKYTIASYQNDLEHFVQFMEREGISSFLDVTYVDVRLYLTTLHDEKLARKSVARKVS 80 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRL 194 S+R L+++ +R+ Y NP PK++ + E++++ G + + Sbjct: 81 SLRSLYRFLMREGYREDNPFALASLPKKELSIPKFLYVEELEKLFEVSDVKTPLGQRDQA 140 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVE------------LPDGF 241 E + +G+R S+ + + ++ +I T K V + +G Sbjct: 141 LLELMYATGIRVSECVSLQLTDIDFSVGTILVTGKGKKQRYVPFGSYAQDALITYIENGR 200 Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299 +L T + F+N + + KA + S H +R AT D Sbjct: 201 KQLAKKTEEHSQMVFLNAKGKPLTDRGVRYILNELIKKASLTMRISPHMLRHTFATHMLD 260 Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRL 331 GA + G + + + YT + RL Sbjct: 261 EGADLRTVQELLGHENLSTTQIYTH-VSKERL 291 >gi|213963184|ref|ZP_03391442.1| tyrosine recombinase XerD [Capnocytophaga sputigena Capno] gi|213954268|gb|EEB65592.1| tyrosine recombinase XerD [Capnocytophaga sputigena Capno] Length = 303 Score = 127 bits (318), Expect = 3e-27, Method: Composition-based stats. Identities = 41/265 (15%), Positives = 92/265 (34%), Gaps = 26/265 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRK----ITTKHIRSGVE--SRKHTPSSAIQFLT 138 L+ N+ +S+ +++I ++ + I +R V ++ S + ++ Sbjct: 17 RGLSQNTAVSYGLDIEKLICYLEKYNITETPNNIEEDTLRQFVYEVAKDLNARSQARLIS 76 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRL 194 +++ FK+ + ++ P +E PK + + +++ + EG + + Sbjct: 77 ALKSFFKFMMYEKGREDFPMSLIESPKIGVKLPDTLSLQEIDAMLASIDLSTDEGHRNKA 136 Query: 195 AFEFLLYSGLRCSDSCRAGVQH--LQNNIFSIKTQKTGTIITVELP-----------DGF 241 E L GLR S+ + + + K V + D Sbjct: 137 MIEMLYACGLRVSELISLRLSDLFFDEDFIRVM-GKGSKQRLVPIEAYTQKQVKQYIDNQ 195 Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299 + L + ++ F+N +++ + A G+ K S H R AT + Sbjct: 196 RRQLKIAKGHEDFVFLNRRGKQLTRAMIFTIVRQVAENIGLQKTISPHTFRHSFATHLLE 255 Query: 300 AGATAHELMATYGWKTVDQAETYTK 324 GA + G + + E Y Sbjct: 256 NGANLRAIQMMLGHENITTTEIYVH 280 >gi|116670082|ref|YP_831015.1| tyrosine recombinase XerD [Arthrobacter sp. FB24] gi|116610191|gb|ABK02915.1| tyrosine recombinase XerD [Arthrobacter sp. FB24] Length = 346 Score = 127 bits (318), Expect = 3e-27, Method: Composition-based stats. Identities = 56/307 (18%), Positives = 101/307 (32%), Gaps = 38/307 (12%) Query: 52 TGSTPKREYINSPRKKPTTLKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKS---G 107 P+ E PR + +++Y + LA N+ ++ + G Sbjct: 23 RAGQPQGEGSARPRNA---IDRAVNDYLQHMGVERGLAANTLSAYRRDLARYANYLAACG 79 Query: 108 DFDYRKITTKHIRSGVESRKHT--------PSSAIQFLTSMRVLFKWAVRQEYVAINPCL 159 +T +H+ V++ SA + + ++R L K+ + +P Sbjct: 80 PSRPGDVTRRHVTGFVQALSDGSDGGTALGVRSAARTVVAVRGLHKFWALEGITTADPAS 139 Query: 160 SVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQ 215 V P + + +++ + + G + R EFL +G R S++ V Sbjct: 140 DVHPPMPGKRLPKAISVDEVTRILEAAGTDTATGLRDRALLEFLYSTGARISEAVGLDVD 199 Query: 216 HLQ------NNIFSIKTQKTGTIITVEL-------PDGF----MKLLAMTPIGKETFFIN 258 + K V L D + LLA G F+N Sbjct: 200 DISLQADQAGPAIVRLFGKGSKERLVPLGSYGARALDAYLVRGRPLLAAKGKGTPALFLN 259 Query: 259 NDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTV 316 +++ KA A KA + K S H +R AT + GA + G +V Sbjct: 260 ARGGRISRQSAWTILKAAADKANITKDVSPHTLRHSFATHLLEGGADVRVVQELLGHASV 319 Query: 317 DQAETYT 323 + YT Sbjct: 320 TTTQVYT 326 >gi|290513161|ref|ZP_06552523.1| tyrosine recombinase XerC [Klebsiella sp. 1_1_55] gi|289774372|gb|EFD82378.1| tyrosine recombinase XerC [Klebsiella sp. 1_1_55] Length = 300 Score = 127 bits (318), Expect = 3e-27, Method: Composition-based stats. Identities = 42/259 (16%), Positives = 89/259 (34%), Gaps = 19/259 (7%) Query: 85 GSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIR--SGVESRKH-TPSSAIQFLT 138 L+ + +++ D +I ++G +++ +R + R P+S L+ Sbjct: 21 RQLSPITLTNYQRQLDALIVLADEAGLKSWQQCDAAQVRSFAVRSRRAGLGPASLALRLS 80 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQPRLA 195 ++R F W V Q +A NP + PK + +D+ + + R Sbjct: 81 ALRSFFDWMVSQGELAANPAKGIAAPKIPRHLPKNIDVDDVNRLLDIDLNDPLAVRDRAM 140 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMKLLAMT------ 248 E + +GLR S+ ++HL K + + + + Sbjct: 141 LEVMYGAGLRLSELVNLDIKHLDLESGEVWVMGKGSKERRLPIGRNAVAWIEHWLDLRGL 200 Query: 249 -PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAH 305 + F++ ++++A F K G+N H +R AT ++ Sbjct: 201 FGTDDDALFLSKLGKRISARNVQKRFAEWGIKQGLNSHVHPHKLRHSFATHMLESSGDLR 260 Query: 306 ELMATYGWKTVDQAETYTK 324 + G + + YT Sbjct: 261 GVQELLGHANLSTTQIYTH 279 >gi|228998607|ref|ZP_04158194.1| Tyrosine recombinase xerC [Bacillus mycoides Rock3-17] gi|229006107|ref|ZP_04163795.1| Tyrosine recombinase xerC [Bacillus mycoides Rock1-4] gi|228755183|gb|EEM04540.1| Tyrosine recombinase xerC [Bacillus mycoides Rock1-4] gi|228761075|gb|EEM10034.1| Tyrosine recombinase xerC [Bacillus mycoides Rock3-17] Length = 302 Score = 127 bits (318), Expect = 3e-27, Method: Composition-based stats. Identities = 43/272 (15%), Positives = 96/272 (35%), Gaps = 26/272 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKSGD------FDYRKITTKHIRSGVESRKHTPSSAIQFLT 138 + + + S+++ + ++ D + + + + K S + ++ Sbjct: 21 RNYSKYTIASYQNDLEHFVQFMEREGISSFLDVTYVDVRLYLTTLHDEKLARKSVARKVS 80 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRL 194 S+R L+++ +R+ Y NP PK+ + E++++ G + + Sbjct: 81 SLRSLYRFLMREGYREDNPFALASLPKKDLSIPKFLYVEELEKLFEVSDVKTPLGQRDQA 140 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVE------------LPDGF 241 E + +G+R S+ + + ++ +I T K V + +G Sbjct: 141 LLELMYATGIRVSECVSLQLTDIDFSVGTILVTGKGKKQRYVPFGSYAQDALITYIENGR 200 Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299 +L T + F+N + + KA + S H +R AT D Sbjct: 201 KQLAKKTEEHSQMVFLNAKGKPLTDRGVRYILNELIKKASLTMRISPHMLRHTFATHMLD 260 Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRL 331 GA + G + + + YT + RL Sbjct: 261 EGADLRTVQELLGHENLSTTQIYTH-VSKERL 291 >gi|71276068|ref|ZP_00652349.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella fastidiosa Dixon] gi|71902095|ref|ZP_00684131.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella fastidiosa Ann-1] gi|71163151|gb|EAO12872.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella fastidiosa Dixon] gi|71728140|gb|EAO30335.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella fastidiosa Ann-1] Length = 339 Score = 127 bits (318), Expect = 4e-27, Method: Composition-based stats. Identities = 63/333 (18%), Positives = 116/333 (34%), Gaps = 28/333 (8%) Query: 7 LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66 +P F + + + G + YY+ G R P Y A+ + E+ Sbjct: 11 IPRFRVRPQ-KSGVVYYYYDHGGKPRKETPLG------RDYGLAIQ-RWAELEHAQITPA 62 Query: 67 KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVE 124 T + + YR + A N++ Y + +++ D + I +IR ++ Sbjct: 63 IAVTFRHVAERYRAEVI-PTKAYNTQRMHHIYLNYLLKFFDDPPAPFESIKPVNIRQYLD 121 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVA-INPCLSVERPKRKTEGIRPWTKEDMQQFK 183 R SA + + L+ WA + NPC + R K + + D ++ Sbjct: 122 WRTSKV-SANREVALFSHLWNWARSKGITDLPNPCGGIRRNKERGRDVYI----DDTTYR 176 Query: 184 SFWSEGSQP-RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242 + + Q R A + +G R SD +H+ N I KTG + + + Sbjct: 177 AVYQAADQTLRDAMDLAYLTGQRVSDVVNMDERHIVNGALEICQAKTGVKLAIAITGELA 236 Query: 243 KLLAMTPIGKE-------TFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKF 292 L+ K ++ +N + + F+ AG+ K +R Sbjct: 237 VLIKRILARKRGMKLRSTRLIVDEKGLGLNWKKLAYRFRKVRAAAGIAKEVFQFRDLRAK 296 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKG 325 +AT AD + A G +V E Y + Sbjct: 297 AATDKADLAGDMRQAQAQLGHASVTMTEHYVRK 329 >gi|299538025|ref|ZP_07051311.1| integrase-recombinase protein [Lysinibacillus fusiformis ZC1] gi|298726607|gb|EFI67196.1| integrase-recombinase protein [Lysinibacillus fusiformis ZC1] Length = 276 Score = 127 bits (318), Expect = 4e-27, Method: Composition-based stats. Identities = 38/254 (14%), Positives = 84/254 (33%), Gaps = 8/254 (3%) Query: 85 GSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRV 142 L+ + + Q G + + + + +E + P S L +++ Sbjct: 15 ARLSPETIRGYRIALTQFFTFCVKGFGEVKATDIRAWLASLEEKGLKPRSIHAKLAALKS 74 Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS 202 + + + + V NP L+V PK ++ ++ + + R E L + Sbjct: 75 FYNYCMEENQVKKNPTLTVRAPKIDDSLPYYLSRREVALLQELTRHDPRNRAIVETLYTT 134 Query: 203 GLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITV----ELPDGFMKLLAMTPIGKETFF 256 G+R S+ + ++ + I+ K V + + LA F Sbjct: 135 GVRISELLQIKLEDVKWDTRQIWIRKGKGNKERFVLFSYDCLERLNTYLAHRKRESAYLF 194 Query: 257 INNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTV 316 N + ++ F+A + + G H +R A A+ + G + Sbjct: 195 SNYWGKPLSHVFVEQQFQAFSEELGFRVRPHTLRHTFAAHLAEKNMPQSYIQELLGHVNI 254 Query: 317 DQAETYTKGADRIR 330 + YT+ + R Sbjct: 255 NSTRIYTRLMEHAR 268 >gi|163736279|ref|ZP_02143698.1| phage integrase [Phaeobacter gallaeciensis BS107] gi|161390149|gb|EDQ14499.1| phage integrase [Phaeobacter gallaeciensis BS107] Length = 337 Score = 127 bits (318), Expect = 4e-27, Method: Composition-based stats. Identities = 49/308 (15%), Positives = 103/308 (33%), Gaps = 33/308 (10%) Query: 58 REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD--YRKIT 115 S L+W+ + A A N+ +++ + G + + T Sbjct: 3 PPAAQSANAPKDDLQWIATFLDAQAADLGAARNTLLAYGRDLKDVASWLGHKNRAFGSAT 62 Query: 116 TKHIRSGV---ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172 I S + ++ ++ + L++++ ++++A + + + NP + ++ P R+ + Sbjct: 63 RDDIESYLIACDAEGLARATRARRLSAIKQIYRFAFDEGWRSDNPAIQIKGPGRQKALPK 122 Query: 173 PWTKEDMQQFKSFW-------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSI 224 ++ + S+ + E L +G+R S+ V + + + Sbjct: 123 TLEVIEVDRLLDAARQSGRNLSDRLRNTCMMELLYATGMRVSELVGLPVAAARGDPRMLL 182 Query: 225 KTQKTGTIITVELPDGFMKLLAMTPIGKET--------------FFINNDKQ--KMNATQ 268 K G V L LA ++ F + + + + Sbjct: 183 VLGKGGKERMVPLSPPARDALAAWLTTRDAAEEAAVAKGAAPSRFLFPSRGKSGHLTRHR 242 Query: 269 FSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 F + K A G+ S H +R AT GA + A G + E YT Sbjct: 243 FYLLIKEFAVAGGLPPEAVSPHTLRHAFATHLLTNGADLRAIQALLGHADIATTEIYTHV 302 Query: 326 ADRIRLGI 333 D RL Sbjct: 303 LD-ARLSE 309 >gi|325674273|ref|ZP_08153962.1| integrase/recombinase XerD [Rhodococcus equi ATCC 33707] gi|325554953|gb|EGD24626.1| integrase/recombinase XerD [Rhodococcus equi ATCC 33707] Length = 309 Score = 127 bits (318), Expect = 4e-27, Method: Composition-based stats. Identities = 55/287 (19%), Positives = 96/287 (33%), Gaps = 34/287 (11%) Query: 71 LKWLISEYRKSAH-WGSLAVNSRISFESYFDQ---IIRKSGDFDYRKITTKHIRSGVESR 126 L LI Y A N+ S+ D+ + G D R +T + V + Sbjct: 4 LGGLIDSYLDHLAVERGAARNTLTSYRRDLDRYARFLEARGTDDVRSVTETDVSEFVVAL 63 Query: 127 KHT----------PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176 + PSSA + L ++R L ++A + + + +V+ P + Sbjct: 64 RKGDPAEGVVALAPSSAARALIAVRGLHRFAAAEGVTSGDVARAVKPPTPGRRLPKSLPL 123 Query: 177 EDMQQFK--------SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQ 227 +D+ + + R E L +G R S++ V L + Sbjct: 124 DDVLAILEASGGDGSADNPRTLRDRALLELLYSTGARISEAVGLDVDDLDTQSRSVLLRG 183 Query: 228 KTGTIITVELPDGFMKLL---------AMTPIGKETFFINNDKQKMNATQFSIWFKAKAT 278 K G V + + + A++ G F+N +++ A Sbjct: 184 KGGKERVVPVGRPAITAIDNYLVRGRPALSVRGGPALFLNVRGGRLSRQSAWQVLHTAAE 243 Query: 279 KAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 KAG+ S H +R AT D GA + G +V + YT Sbjct: 244 KAGIAVAVSPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQIYT 290 >gi|325131793|gb|EGC54493.1| tyrosine recombinase XerD [Neisseria meningitidis M6190] gi|325137843|gb|EGC60418.1| tyrosine recombinase XerD [Neisseria meningitidis ES14902] Length = 291 Score = 127 bits (318), Expect = 4e-27, Method: Composition-based stats. Identities = 43/267 (16%), Positives = 91/267 (34%), Gaps = 18/267 (6%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFD--YRKITTKHIRSGVESRKHTPSSAIQFLTSMRV 142 L+ N+ + ++I R+ + + + V SS + L++ + Sbjct: 17 RRLSQNTLNGYRRDLEKIARRLSQSGRMLKDADEADLAAAVYVDGEQRSSQARALSACKR 76 Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAFEF 198 L+ W R+ NP ++ PK T++ + + + G + + E Sbjct: 77 LYIWMEREGIRTDNPTRLLKPPKIDKNIPTLITEQQISRLLAAPDTDTPHGLRDKALLEL 136 Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG----------FMKLLAM 247 + +GLR S++ + + I K V + + L + Sbjct: 137 MYATGLRVSEAVGLNFSSVDLDRGCITALGKGDKQRMVPMGQESAYWVERYYTEARPLLL 196 Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHE 306 + F++ K ++ + K A +AG+ S H +R AT G Sbjct: 197 KGRNCDALFVSQKKTGISRQLAWMIVKEYAGRAGIGYISPHSLRHAFATHLVRHGLDLRV 256 Query: 307 LMATYGWKTVDQAETYTKGADRIRLGI 333 + G ++ + YT A+ G+ Sbjct: 257 VQDMLGHADLNTTQIYTHVANVWLQGV 283 >gi|301029172|ref|ZP_07192295.1| phage integrase, SAM-like domain protein [Escherichia coli MS 196-1] gi|299877900|gb|EFI86111.1| phage integrase, SAM-like domain protein [Escherichia coli MS 196-1] Length = 326 Score = 127 bits (318), Expect = 4e-27, Method: Composition-based stats. Identities = 59/319 (18%), Positives = 110/319 (34%), Gaps = 24/319 (7%) Query: 28 GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSL 87 G RRI + + I A + +G K TL + Y K + Sbjct: 8 GRDRRIAI-----TEAIQANIELFSGHKHKPLTARINSDNSVTLHSWLDRYEKILASRGI 62 Query: 88 AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH--TPSSAIQFLTSMRVLFK 145 + I++ S I R D ITTK I + + +SA +++ F+ Sbjct: 63 KQKTLINYMSKIKAIRRGLPDAPLEDITTKEIAAMLNGYIDEGKAASAKLIRSTLSDAFR 122 Query: 146 WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLR 205 A+ + ++ NP + K + R E ++ +++ S RLA E + +G R Sbjct: 123 EAIAEGHITTNPVAATRAAKSEVRRSRLTADEYLKIYQAAESSPCWLRLAMELAVVTGQR 182 Query: 206 CSDSCRAGVQHLQNNIFSIKTQKTGTIITVE---------LPDGFMKLLAMTPIGKETFF 256 D C + + ++ KTG I + + +G ET Sbjct: 183 VGDLCEMKWSDIVDGYLYVEQSKTGVKIAIPTALHVDALGISMKETLDKCKEILGGETII 242 Query: 257 INNDKQKMNATQFSIWFKAKATKAGV-----NKSAHGVRKFSATISADAGATAHELMATY 311 + ++ +++ S +F +G+ + H +R + + + Sbjct: 243 ASTRREPLSSGTVSRYFMRARKASGLSFEGDPPTFHELR-SLSARLYEKQISDKFAQHLL 301 Query: 312 GWKTVDQAETYTKGADRIR 330 G K+ A Y DR R Sbjct: 302 GHKSDTMASQY--RDDRGR 318 >gi|217076522|ref|YP_002334238.1| site-specific recombinase XerD [Thermosipho africanus TCF52B] gi|259710439|sp|B7IFN3|XERC_THEAB RecName: Full=Tyrosine recombinase xerC gi|217036375|gb|ACJ74897.1| site-specific recombinase XerD [Thermosipho africanus TCF52B] Length = 283 Score = 127 bits (318), Expect = 4e-27, Method: Composition-based stats. Identities = 43/282 (15%), Positives = 102/282 (36%), Gaps = 21/282 (7%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR------K 127 + S+Y + N+ +++ + + G I K + +++ Sbjct: 7 MFSDYLAHVRRH--SENTLKAYKKDVRKFLTYVG-KQINNIERKDVEEFLKALSKGDITG 63 Query: 128 HTPS--SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 +P + ++++S+ F + + NP ++ P+ + + T++++ Sbjct: 64 ESPRETTISRYISSLNSFFNYLELSGMIYENPMERIKHPRIRRKIPDFLTEDEVSSLIGA 123 Query: 186 WSEG--SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGF 241 ++E + + A L Y+GLR S+ C + ++ K V LPD Sbjct: 124 FNEENELRQKTAISLLYYAGLRISELCNLRTTDISFIPPFLRVEMGKGRKDRLVPLPDKV 183 Query: 242 MKLLAM-TPIGKETFFINNDKQK-MNATQFSIWFKAKATKAGVNKS--AHGVRKFSATIS 297 + +L + F+ + +K ++ + W K +A + K H +R AT Sbjct: 184 IPILKKYIDLENPKIFVFENGKKHVHPSTVFRWLKEGVKRANIKKDVHPHTLRHSYATHL 243 Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339 G + G + Y AD+ + +++ Sbjct: 244 IRKGVNIKVVQELLGHTNLSTTSIYLHVADQEK--FDAVKKL 283 >gi|124006330|ref|ZP_01691164.1| tyrosine recombinase XerD [Microscilla marina ATCC 23134] gi|123987987|gb|EAY27658.1| tyrosine recombinase XerD [Microscilla marina ATCC 23134] Length = 299 Score = 127 bits (318), Expect = 4e-27, Method: Composition-based stats. Identities = 46/265 (17%), Positives = 96/265 (36%), Gaps = 25/265 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKSG-------DFDYRKITTKHIRSGVESRKHTPSSAIQFL 137 SL+ NS ++ + + + K S + SS + L Sbjct: 18 RSLSENSLEAYLHDIQKFSDYLEMAGLSILPAEVKADHIKKFLSYLAKLGIAASSQARIL 77 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPR 193 + ++ +K+ + +E + +P ++V P+ + + ++++ + EG++ R Sbjct: 78 SGIKAFYKYLMLEETIERDPSVNVHTPRIDRKIPDVLSLQEIEDLLAVIDLSTPEGARNR 137 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLL------- 245 E L SGLR ++ + +L +I ++ K V + + L Sbjct: 138 AMIEVLYSSGLRVTELIELKISNLYLDIGFLRIIGKANKERFVPIGREAARYLISYIENI 197 Query: 246 ----AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299 + P ++ F+N K++ + K A A + K S H R AT Sbjct: 198 RSNVPVKPNNEDFVFLNRRGTKISRVMVFMIIKEVALLADIKKNISPHTFRHSFATHLIL 257 Query: 300 AGATAHELMATYGWKTVDQAETYTK 324 GA + G + + E Y + Sbjct: 258 GGANIKAVQEMLGHENITTTEIYKR 282 >gi|15838243|ref|NP_298931.1| phage-related integrase [Xylella fastidiosa 9a5c] gi|9106699|gb|AAF84451.1|AE003991_3 phage-related integrase [Xylella fastidiosa 9a5c] Length = 339 Score = 127 bits (318), Expect = 4e-27, Method: Composition-based stats. Identities = 63/337 (18%), Positives = 115/337 (34%), Gaps = 26/337 (7%) Query: 2 TPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYI 61 T + +P F + + + G + YY+ G R P Y A+ + E+ Sbjct: 6 TKAGAIPRFRVRPQ-KSGVVHYYYDHGGKPRKETPLG------RDYGLAI-KRWAELEHA 57 Query: 62 NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHI 119 T + + YR + A N++ Y + +++ D + I +I Sbjct: 58 QITPAIAVTFRHVAERYRAEVI-PTKAHNTQRMHHIYLNYLLQFFDDPPAPFESIKPVNI 116 Query: 120 RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVA-INPCLSVERPKRKTEGIRPWTKED 178 R ++ R SA + + L+ WA + NPC + R K + +D Sbjct: 117 RQYLDWRTSKV-SANREVALFSHLWNWARSKGITDLPNPCAGIRRNKESGRDVYI---DD 172 Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238 + + R A + +G R SD +H+ N I KTG + + + Sbjct: 173 ATYHAVYQAADQTLRDAMDLAYLTGQRVSDVVSMDERHIVNGALEICQAKTGVKLAIAIT 232 Query: 239 DGFMKLLAMTPIGKE-------TFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAHG 288 L+ K ++ +N + + F+ AG+ K Sbjct: 233 GELAILIKRILARKRGMKLRSTRLIVDEKGLGLNWKKLAYRFRKVRAAAGIAKEVFQFRD 292 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 +R +AT AD + A G +V E Y + Sbjct: 293 LRAKAATDKADLAGDMRQAQAQLGHASVVMTEHYVRK 329 >gi|310778330|ref|YP_003966663.1| integrase family protein [Ilyobacter polytropus DSM 2926] gi|309747653|gb|ADO82315.1| integrase family protein [Ilyobacter polytropus DSM 2926] Length = 297 Score = 127 bits (318), Expect = 4e-27, Method: Composition-based stats. Identities = 48/285 (16%), Positives = 98/285 (34%), Gaps = 24/285 (8%) Query: 71 LKWLISEYRKSAHWGS-LAVNSRISFESYFDQIIRKSGDF-------DYRKITTKHIRSG 122 L+ LI ++ +G ++N+ SF+ Q+ D +++ + Sbjct: 6 LEKLIKDFIYFEEFGDGKSLNTIKSFKKDLGQLRDYLSKKENINNPKDIKEMALRGFLVE 65 Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 ++ S + ++S+R FK+ Q Y+ NP + + P K + TKE++ + Sbjct: 66 LQKENIGKRSLNRKISSLRTFFKYLKNQGYIEKNPTILLTGPAFKADLPEILTKEEIDRI 125 Query: 183 KSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238 + G + RL E L SG+R S+ G ++ V Sbjct: 126 REVIDIEKTNGIRDRLIVELLYSSGIRTSELLSLGESLFDLEKRQLRVTGGKQPRIVFFS 185 Query: 239 DGFMKL----------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SA 286 + + + F+N +++ + A KA + K S Sbjct: 186 ERTREYFKRYVESKKKKYRAKYTADILFVNGSGTRLSDRSLRRIIERYAKKAEIQKEISP 245 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 H R G L G +V+ + Y + ++ ++ Sbjct: 246 HTFRHTFGVYMLTHGMGLMHLQELMGHVSVESTKIYEEFVNKPKI 290 >gi|260583822|ref|ZP_05851570.1| integrase/recombinase XerC [Granulicatella elegans ATCC 700633] gi|260158448|gb|EEW93516.1| integrase/recombinase XerC [Granulicatella elegans ATCC 700633] Length = 294 Score = 127 bits (318), Expect = 4e-27, Method: Composition-based stats. Identities = 41/260 (15%), Positives = 94/260 (36%), Gaps = 25/260 (9%) Query: 90 NSRISFESYFDQIIRKSGDFDYRKI------TTKHIRSGVESRKHTPSSAIQFLTSMRVL 143 + +++ +Q + + K+ + + +++ SS +FL+S+R Sbjct: 2 KTVEAYQRDIEQFLMFLKEIPLTKLSEVTAVDVRIYLGKLHQQQYNRSSISRFLSSLRSF 61 Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS----FWSEGSQPRLAFEFL 199 +++ + ++V NP S+ K + + +++M++F + + R E L Sbjct: 62 YQYLLEHDFVEENPFASISYKKGQKRLPEFFYEDEMEKFIASIDGNQPLDQRNRALIEVL 121 Query: 200 LYSGLRCSDSCRAGVQHLQN-NIFSIKTQKTGTIITVELPDGFMKLLAMT---------- 248 +G+R S+ +Q L N + K V + D + L + Sbjct: 122 YATGMRVSELTELTLQQLDLKNGVILVIGKGSKERYVPIGDFATEALQLYLEESRSSLMS 181 Query: 249 --PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATA 304 + F+N+ + T ++G+ H +R AT + GA Sbjct: 182 QYKKEHASVFVNHLGDPITTTGVRYILNQLLQESGLQLKIHPHMLRHTFATHLLNNGADM 241 Query: 305 HELMATYGWKTVDQAETYTK 324 + G ++ + YT Sbjct: 242 KTVQELLGHVSLSSTQIYTH 261 >gi|114776721|ref|ZP_01451764.1| tyrosine recombinase [Mariprofundus ferrooxydans PV-1] gi|114552807|gb|EAU55238.1| tyrosine recombinase [Mariprofundus ferrooxydans PV-1] Length = 298 Score = 127 bits (318), Expect = 4e-27, Method: Composition-based stats. Identities = 42/275 (15%), Positives = 91/275 (33%), Gaps = 17/275 (6%) Query: 67 KPTTLKWLISEYRKSAHWGSL-AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV-- 123 + +S Y + L + ++ ++ G+ ++IT ++ + Sbjct: 2 AAADFRTAVSAYLQELAEVRLASPHTIAAYRRDLGAFGEHCGNIGLQQITRLQVQDWLVV 61 Query: 124 -ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 ++ ++ + L+++ L AV+ N V PK+ R E Sbjct: 62 GHAKGLAAATLARRLSALTGLLDSAVQAGICPANVAAGVRPPKKSARLPRTLPPEQTAAL 121 Query: 183 K--SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELP- 238 + S + + +GLR S++ + + + ++ K V LP Sbjct: 122 MQPTHASADRRDLALLAVMYGAGLRVSEAVGLDLHDIDLHSCELRVLGKGSKQRIVPLPT 181 Query: 239 -------DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK--AGVNKSAHGV 289 + L + F+N Q++ A K +A + A ++ + H + Sbjct: 182 TAADLLGQWLDERLLGLVRDERAVFLNRFGQRLTARSVQRMLKTRALESGADISVTPHRL 241 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 R AT G + G ++ E YT Sbjct: 242 RHSFATHLLAGGVDLRAIQELLGHASLATTERYTH 276 >gi|159042951|ref|YP_001531745.1| phage integrase family protein [Dinoroseobacter shibae DFL 12] gi|157910711|gb|ABV92144.1| phage integrase family protein [Dinoroseobacter shibae DFL 12] Length = 397 Score = 126 bits (317), Expect = 4e-27, Method: Composition-based stats. Identities = 56/337 (16%), Positives = 108/337 (32%), Gaps = 22/337 (6%) Query: 25 FRKGHGRR---IRLPYPHESTFIPAYMSALTGSTP---KREYINSPRKKPTTLKWLISEY 78 +RKG R I L G S ++ +T+ L + Sbjct: 45 YRKGGRTRRASIGRHGTVTVQQARQRAKELLGDVASGGNPVEEISQHRRASTVAALCERF 104 Query: 79 RKSAHWGSLAVNSRISFESYFDQIIR-KSGDFDYRKITTKHIRSGVESRKHTPSSAIQFL 137 ++ +++ + D I G F + + I + P A + L Sbjct: 105 FEAHVMERCKPSTQREYRRSIDFFINPAIGTFKVVDVERRDIAELHHKLRDKPYQANRTL 164 Query: 138 TSMRVLFKWAVRQEYVAI--NPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-------SE 188 + +F A NPC V + R+ + R ++ ++++ SE Sbjct: 165 GVLSKMFNLAEVWGLRPDGSNPCRHVPK-YRERKRERYLSQAELRRLGEVLADCERSGSE 223 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT 248 AF+ L+ +G R + +L N + KTG + LP +L Sbjct: 224 SPYVVAAFKLLILTGCRLGEIQTLRWDYLTPNGMELPDSKTGAR-RIPLPSAARAVLDAL 282 Query: 249 PIG-KETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHE 306 P + I + + T ++ AG+ + H +R A+ + +G Sbjct: 283 PHDPGNPYVIAGRIEGQHITDLQHPWRRIRDLAGLNDVRIHDLRHTYASNAVSSGMPIQM 342 Query: 307 LMATYGWKTVDQAETYTKGAD--RIRLGIKNSRRISS 341 + G + Y AD + +N+ +S Sbjct: 343 VGRLLGHTQLQTTMRYAHLADDPVRKAAEENAAALSE 379 >gi|325266806|ref|ZP_08133478.1| tyrosine recombinase XerD [Kingella denitrificans ATCC 33394] gi|324981738|gb|EGC17378.1| tyrosine recombinase XerD [Kingella denitrificans ATCC 33394] Length = 289 Score = 126 bits (317), Expect = 4e-27, Method: Composition-based stats. Identities = 41/260 (15%), Positives = 94/260 (36%), Gaps = 18/260 (6%) Query: 86 SLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVL 143 LA N+ ++ ++ + D++ + + V + PS+ + L++++ Sbjct: 16 RLAHNTLEAYRHDLHKVAERLAAAQTDWQHADNRQLADAVYAADEQPSTQSRTLSAVKKW 75 Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRLAFEFL 199 +++ ++ NP ++ K +P ++ + + G + + E + Sbjct: 76 YQYLNDTQHRHDNPSRDLKAAKIPRSLPQPVSEAQIDALLAAPDTDTLHGLRDKALLELM 135 Query: 200 LYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-EL----PDGFMKLLAMTPI---- 250 +GLR S++ + + L + T G + L D + L Sbjct: 136 YATGLRVSEAVKLSLNELDLTRGMVNTIGKGNKQRIVPLGEVAADWLERYLHTARPELLK 195 Query: 251 --GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHEL 307 F++ K ++ A + G+ S HG+R AT + GA + Sbjct: 196 GQACAYVFVSQKKVGISRQLAWQVVAKYAQQVGLPALSPHGLRHAFATHLVNHGADLRVV 255 Query: 308 MATYGWKTVDQAETYTKGAD 327 G +++ E YT A+ Sbjct: 256 QLLLGHESLTTTEIYTHVAN 275 >gi|301022623|ref|ZP_07186494.1| phage integrase, SAM-like domain protein [Escherichia coli MS 196-1] gi|299881195|gb|EFI89406.1| phage integrase, SAM-like domain protein [Escherichia coli MS 196-1] Length = 327 Score = 126 bits (317), Expect = 4e-27, Method: Composition-based stats. Identities = 58/317 (18%), Positives = 106/317 (33%), Gaps = 22/317 (6%) Query: 28 GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSL 87 G RRI + + I A + L+ S K TL + Y + Sbjct: 8 GRDRRIAI-----TEAIQANIELLSDSGRKSLIDRIKGGDAITLHVWLDRYETILSERGI 62 Query: 88 AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPSSAIQFLTSMRVLFK 145 + + + S I RK D I+TK + + + + + +SA +++ +F+ Sbjct: 63 RPKTLLDYASKIRAIRRKLPDKPLTDISTKEVAAMLNTYVAEGKAASAKLIRSTLVDVFR 122 Query: 146 WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLR 205 A+ + +VA NP + K + R E ++ + + RLA + + +G R Sbjct: 123 EAIAEGHVATNPVTATRTAKSEVRRSRLTANEYVEIYHAAEPLPIWLRLAMDLAVVTGQR 182 Query: 206 CSDSCRAGVQHLQNNIFSIKTQKTGTIITVE-------LPDGFMKLL--AMTPIGKETFF 256 D CR + +N I+ KTG + + L L ET Sbjct: 183 VGDLCRMKWSDINDNHLHIEQSKTGAKLAIPLMLTIDALNISLADTLQKCREASSSETII 242 Query: 257 INNDKQKMNATQFSIWFKAKATKAGV-----NKSAHGVRKFSATISADAGATAHELMATY 311 + ++ S +F +G+ + H +R + Sbjct: 243 ASKHHDPLSPKTVSKYFTKARNASGLSFDGTPPTFHELR-SLSARLYRNQIGDKFAQRLL 301 Query: 312 GWKTVDQAETYTKGADR 328 G K+ A Y R Sbjct: 302 GHKSDSMAARYRDSRGR 318 >gi|312965202|ref|ZP_07779439.1| integrase [Escherichia coli 2362-75] gi|312290293|gb|EFR18176.1| integrase [Escherichia coli 2362-75] Length = 356 Score = 126 bits (317), Expect = 4e-27, Method: Composition-based stats. Identities = 61/343 (17%), Positives = 111/343 (32%), Gaps = 25/343 (7%) Query: 7 LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMS---ALTGSTPKREYINS 63 LPP + R+ Y G+ L A + +G K Sbjct: 12 LPPNLY---IRNNGYYCYRDPRTGKEFGLGRDRRIAITEAIQANIELFSGHKHKPLTARI 68 Query: 64 PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123 TL + Y K + + I++ S I R D ITTK I + + Sbjct: 69 NSDNSVTLHSWLDRYEKILASRGIKQKTLINYMSKIKAIRRGLPDAPLEDITTKEIAAML 128 Query: 124 ESRKH--TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 +SA +++ F+ A+ + ++ NP + K + R E ++ Sbjct: 129 SGYIDEGKAASAKLIRSTLSDAFREAIAEGHITTNPVAATRAAKSEVRRSRLTADEYLKI 188 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE----- 236 +++ S RLA E + +G R D C + + ++ KTG I + Sbjct: 189 YQAAESSPCWLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAIPTTLHV 248 Query: 237 ----LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK-----AGVNKSAH 287 + +G ET + ++ +++ S +F G + H Sbjct: 249 DALGISMKETLDKCKEILGGETIIASTHREPLSSGTVSRYFMRARKASDLSFEGDPPTFH 308 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 +R + + + G K+ A Y DR R Sbjct: 309 ELR-SLSARLYEKQISDKFAQHLLGHKSDTMASQY--RDDRGR 348 >gi|227498489|ref|ZP_03928635.1| tyrosine recombinase xerC [Acidaminococcus sp. D21] gi|226903947|gb|EEH89865.1| tyrosine recombinase xerC [Acidaminococcus sp. D21] Length = 302 Score = 126 bits (317), Expect = 4e-27, Method: Composition-based stats. Identities = 45/269 (16%), Positives = 94/269 (34%), Gaps = 27/269 (10%) Query: 88 AVNSRISFESYFDQI------IRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMR 141 + N+ ++++ K+ + + + + + + + + ++S+R Sbjct: 23 SPNTILNYKDDLIAFSVFLSGRGKATWLEVSLLDIRSYLAQLHREEKARRTIARRISSLR 82 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRLAFE 197 +++ +R+ NP V+ PK + + + +M G + R E Sbjct: 83 SFYRYLMREGLTDKNPFTKVKTPKLEKKLPVFLEEFEMNHLLELPDLSTELGQRDRALLE 142 Query: 198 FLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIG----- 251 FL +G R S+ + L +N +++ K V L ++ + G Sbjct: 143 FLYSTGCRVSELVGLTLTRLDLSNRYALLLGKGHKERIVPLGHPCIRAMNAYLTGARRVL 202 Query: 252 --------KETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAG 301 + F+N+ + A A + K S H +R AT D G Sbjct: 203 MEKYEVPSHDFIFVNHRGTPLTARSVRRILDRYVEMASIQKHVSPHTIRHTFATHLLDHG 262 Query: 302 ATAHELMATYGWKTVDQAETYTK-GADRI 329 A + G ++ + YT ADRI Sbjct: 263 ADLRSVQELLGHASLSTTQIYTHVTADRI 291 >gi|261405985|ref|YP_003242226.1| integrase family protein [Paenibacillus sp. Y412MC10] gi|261282448|gb|ACX64419.1| integrase family protein [Paenibacillus sp. Y412MC10] Length = 294 Score = 126 bits (317), Expect = 4e-27, Method: Composition-based stats. Identities = 40/270 (14%), Positives = 96/270 (35%), Gaps = 25/270 (9%) Query: 76 SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH------IRSGVESRKHT 129 +Y + L+ ++ S+ + + + + + + + + Sbjct: 9 VQYLE--DEKGLSRSTIASYRADLQGFLAFAAEREVTHPREVNRTLLGLYVGRLRQQGKA 66 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 SS ++ S+R F++ VRQ + +P ++ PK + + + T E + + S G Sbjct: 67 ASSLLRCTASLRSFFQYLVRQAVIVQDPTQLLDNPKPERKPPKSLTVEQVDKLLSAPDSG 126 Query: 190 S----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-KTGTIITVELPDGFMKL 244 + + + E L SG++ S+ + + + ++ G + + + Sbjct: 127 TPQGARDKAMLELLYASGIKVSELVNLSIHDIHLEMRFLRCAVSGGKERILPITPIAAES 186 Query: 245 LA----------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKF 292 +A M G++ F+N+ ++ F K AG+++ + H +R Sbjct: 187 VAFYVRDMRDKLMRDAGEDALFLNSLGTRLTRQGFWKIIKKYGKLAGIDEDITPHTLRHS 246 Query: 293 SATISADAGATAHELMATYGWKTVDQAETY 322 A GA + G + Y Sbjct: 247 FAMHLLGNGADLRSVQEMLGHSALSTTGMY 276 >gi|237718760|ref|ZP_04549241.1| integrase [Bacteroides sp. 2_2_4] gi|260175400|ref|ZP_05761812.1| integrase, site-specific recombinase [Bacteroides sp. D2] gi|299144639|ref|ZP_07037707.1| tyrosine recombinase XerC [Bacteroides sp. 3_1_23] gi|315923630|ref|ZP_07919870.1| integrase [Bacteroides sp. D2] gi|229451892|gb|EEO57683.1| integrase [Bacteroides sp. 2_2_4] gi|298515130|gb|EFI39011.1| tyrosine recombinase XerC [Bacteroides sp. 3_1_23] gi|313697505|gb|EFS34340.1| integrase [Bacteroides sp. D2] Length = 293 Score = 126 bits (317), Expect = 4e-27, Method: Composition-based stats. Identities = 51/276 (18%), Positives = 105/276 (38%), Gaps = 24/276 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIR----KSGDFDYRKITTKHIRSGV---ES 125 LI + + + + + +++ Q+ + G F+ ++ + IR + Sbjct: 2 LIESFLDYLQYERNYSEKTVLAYGEDIKQLQEFAQEEYGKFNPLEVEAELIREWIVSLMD 61 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + +T +S + L+S+R +K+ +RQ I+P ++ PK K + +M + Sbjct: 62 KGYTSTSVNRKLSSLRTFYKYLIRQGKTTIDPLRKIKGPKNKKPLPVFLKENEMNRLLDD 121 Query: 186 WS-----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPD 239 +G + RL E +G+R S+ + + + +K T K + D Sbjct: 122 TDFGEGFKGCRDRLVIEVFYATGMRLSELIGLDDKDVDFSASLLKVTGKRNKQRLIPFGD 181 Query: 240 GFMKLL--------AMTPIGKETFFINNDKQKMNATQFSIWFKA-KATKAGVNK-SAHGV 289 +L+ P E FFI + +++ K + A + K S H + Sbjct: 182 ELRELMLEYINVRNETIPERSEAFFIRENGERLYKNLVYNLVKRNLSKVATLKKRSPHVL 241 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 R AT + A + G +++ E YT Sbjct: 242 RHTFATTMLNNEAELGAVKELLGHESITTTEIYTHA 277 >gi|295095176|emb|CBK84266.1| tyrosine recombinase XerC subunit [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 300 Score = 126 bits (317), Expect = 4e-27, Method: Composition-based stats. Identities = 43/259 (16%), Positives = 93/259 (35%), Gaps = 19/259 (7%) Query: 85 GSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSGV---ESRKHTPSSAIQFLT 138 L+ + ++++ D I + G +++ +R V + +P+S L+ Sbjct: 21 RQLSPITLLNYQRQLDAIMQIADEIGLKSWQQCDAATVRGFVVRSRKKNLSPASLALRLS 80 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQPRLA 195 ++R F W V Q + NP + PK + +D+ + + R Sbjct: 81 ALRSFFDWLVSQGGLKANPAKGIATPKAPRHLPKNIDVDDVNRLLDIDLNDPLAVRDRAM 140 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT--------VELPDGFMKLLAM 247 E + +GLR S+ ++HL + G+ V + ++ L + Sbjct: 141 LEVMYGAGLRLSELVNLDLKHLDLESGEVWVMGKGSKERRLPIGRNAVSWIEHWLDLRGL 200 Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAH 305 ++ F++ ++++A F K G+N H +R AT ++ Sbjct: 201 FGADEDALFLSKLGKRISARNVQKRFAEWGIKQGLNSHVHPHKLRHSFATHMLESSGDLR 260 Query: 306 ELMATYGWKTVDQAETYTK 324 + G + + YT Sbjct: 261 GVQELLGHANLSTTQIYTH 279 >gi|229061434|ref|ZP_04198779.1| Tyrosine recombinase xerC [Bacillus cereus AH603] gi|228717857|gb|EEL69505.1| Tyrosine recombinase xerC [Bacillus cereus AH603] Length = 301 Score = 126 bits (317), Expect = 4e-27, Method: Composition-based stats. Identities = 43/272 (15%), Positives = 97/272 (35%), Gaps = 26/272 (9%) Query: 85 GSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIRSGV---ESRKHTPSSAIQFLT 138 + + + S+++ + + + G + +T +R + +K S + ++ Sbjct: 20 RNYSKYTIASYQNDLEHFVQFMEREGISSFLDVTYADVRLYLTTLHDQKLARKSVARKVS 79 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRL 194 S+R L+++ +R+ Y NP PK++ + E++++ G + + Sbjct: 80 SLRSLYRFLMREGYQKDNPFALASLPKKELSIPKFLYAEELEELFEVSDTGAPLGQRNQA 139 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE------------LPDGF 241 E + +G+R S+ + + + +I K + + +G Sbjct: 140 LLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQRYIPFGSYAQDALITYIENGR 199 Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299 +L T F+N + + KA + S H +R AT D Sbjct: 200 KQLAQKTEEQSHMVFLNAKGKPLTDQGVRYVLNELIKKASLTMRISPHMLRHTFATHMLD 259 Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRL 331 GA + G + + + YT + RL Sbjct: 260 EGADLRTVQELLGHENLSTTQIYTH-VSKERL 290 >gi|300926171|ref|ZP_07141983.1| phage integrase, SAM-like domain protein [Escherichia coli MS 182-1] gi|300417806|gb|EFK01117.1| phage integrase, SAM-like domain protein [Escherichia coli MS 182-1] Length = 356 Score = 126 bits (317), Expect = 4e-27, Method: Composition-based stats. Identities = 62/343 (18%), Positives = 115/343 (33%), Gaps = 25/343 (7%) Query: 7 LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHE---STFIPAYMSALTGSTPKREYINS 63 LPP + R+ Y G+ L + I A + +G K Sbjct: 12 LPPNLY---IRNNGYYCYRDPRTGKEFGLGRDRRIAITEAIQANIELFSGHKHKPLTARI 68 Query: 64 PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123 TL + Y K + + I++ S I R D ITTK I + + Sbjct: 69 NSDNSVTLHSWLDRYEKILASRGIKQKTLINYISKIKAIRRGLPDASLEDITTKEIAAML 128 Query: 124 ESRKH--TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 +SA +++ F+ A+ + ++ NP + K + R E ++ Sbjct: 129 NGYIDEGKAASAKLIRSTLSDAFREAIAEGHITTNPVAATRAAKSEVRRSRLTADEYLKI 188 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE----- 236 +++ S RLA E + +G R D C + + ++ KTG I + Sbjct: 189 YQAAESSPCWLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAIPTTLHV 248 Query: 237 ----LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-----NKSAH 287 + +G ET + ++ +++ S +F +G+ + H Sbjct: 249 DALGISMKETLDKCKEILGGETIIASTRREPLSSGTVSRYFMRARKASGLSFEGDPPTFH 308 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 +R + + + G K+ A Y DR R Sbjct: 309 ELR-SLSARLYEKQISDKFAQHLLGHKSDTMASQY--RDDRGR 348 >gi|228954107|ref|ZP_04116136.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229071329|ref|ZP_04204552.1| Tyrosine recombinase xerC [Bacillus cereus F65185] gi|229081086|ref|ZP_04213596.1| Tyrosine recombinase xerC [Bacillus cereus Rock4-2] gi|229192000|ref|ZP_04318970.1| Tyrosine recombinase xerC [Bacillus cereus ATCC 10876] gi|228591551|gb|EEK49400.1| Tyrosine recombinase xerC [Bacillus cereus ATCC 10876] gi|228702130|gb|EEL54606.1| Tyrosine recombinase xerC [Bacillus cereus Rock4-2] gi|228711783|gb|EEL63735.1| Tyrosine recombinase xerC [Bacillus cereus F65185] gi|228805673|gb|EEM52263.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 299 Score = 126 bits (317), Expect = 5e-27, Method: Composition-based stats. Identities = 43/272 (15%), Positives = 98/272 (36%), Gaps = 26/272 (9%) Query: 85 GSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIRSGV---ESRKHTPSSAIQFLT 138 + + + S+++ + + + G + +T +R + K S + ++ Sbjct: 18 RNYSKYTIASYQNDLEHFVQFMEREGISSFLDVTYADVRLYLTTLHDEKLARKSVARKVS 77 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRL 194 S+R L+++ +R+ Y NP PK++ + E++++ G + + Sbjct: 78 SLRSLYRFLMREGYRKDNPFALASLPKKELSIPKFLYAEELEELFEVSDTETPLGQRNQA 137 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE------------LPDGF 241 E + +G+R S+ + + + +I K + + +G Sbjct: 138 LLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQRYIPFGSYAQDSLITYIENGR 197 Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299 +L+ T F+N + + + KA + S H +R AT D Sbjct: 198 KQLVNKTDEDSHMVFLNAKGKPLTSRGVRYVLNELIKKASLTMRISPHMLRHTFATHMLD 257 Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRL 331 GA + G + + + YT + RL Sbjct: 258 EGADLRTVQELLGHENLSTTQIYTH-VSKERL 288 >gi|223986264|ref|ZP_03636278.1| hypothetical protein HOLDEFILI_03588 [Holdemania filiformis DSM 12042] gi|223961759|gb|EEF66257.1| hypothetical protein HOLDEFILI_03588 [Holdemania filiformis DSM 12042] Length = 304 Score = 126 bits (317), Expect = 5e-27, Method: Composition-based stats. Identities = 47/299 (15%), Positives = 105/299 (35%), Gaps = 25/299 (8%) Query: 70 TLKWLISEY--RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI-----RSG 122 TL+ +Y S + + + + + + + + +I Sbjct: 2 TLEEAFRQYLIYISIQFPK-SEKTIAGYRNDLSRYFQFLAQKEIDRIDQIDSAMLEEYVR 60 Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 V +R H +S +T++R ++ + + ++P +E+ +R T++++++ Sbjct: 61 VLARDHAAASVNHAITAIRGFHQFLAFR-FDELDPAEYLEQLQRTQSLPVYCTRDEIEKI 119 Query: 183 KS---FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELP 238 + + + E L GLR S+ + + + ++ K V +P Sbjct: 120 MAQFGHSPKDIRWHAIAELLYGCGLRVSECAALTMNQVDLELGMLRIWGKGNKERLVPMP 179 Query: 239 -------DGFMKLLAMTPIGKET--FFINNDKQKMNATQFSIWFKAKATKAGVNK--SAH 287 ++ + K T FI +K K+ +AG+ K + H Sbjct: 180 KQTIKIVREYVDTVRPLYQKKPTSWLFITRLGKKTTTASIESMIKSVCIQAGIQKPITPH 239 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSD 346 +R AT + GA + G + + YT DR RL + ++D + Sbjct: 240 KLRHTYATHMLEGGADLRSVQELLGHSDITTTQIYTH-IDRSRLRTAYDEGLGKLMDQE 297 >gi|312139850|ref|YP_004007186.1| tyrosine recombinase xerd [Rhodococcus equi 103S] gi|311889189|emb|CBH48503.1| tyrosine recombinase XerD [Rhodococcus equi 103S] Length = 309 Score = 126 bits (317), Expect = 5e-27, Method: Composition-based stats. Identities = 55/287 (19%), Positives = 96/287 (33%), Gaps = 34/287 (11%) Query: 71 LKWLISEYRKSAH-WGSLAVNSRISFESYFDQ---IIRKSGDFDYRKITTKHIRSGVESR 126 L LI Y A N+ S+ D+ + G D R +T + V + Sbjct: 4 LGGLIDSYLDHLAVERGAARNTLTSYRRDLDRYARFLEARGTDDIRSVTETDVSEFVVAL 63 Query: 127 KHT----------PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176 + PSSA + L ++R L ++A + + + +V+ P + Sbjct: 64 RKGDPAEGVVALAPSSAARALIAVRGLHRFAAAEGVTSGDVARAVKPPTPGRRLPKSLPL 123 Query: 177 EDMQQFK--------SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQ 227 +D+ + + R E L +G R S++ V L + Sbjct: 124 DDVLAILEASGGDGSADNPRTLRDRALLELLYSTGARISEAVGLDVDDLDTQSRSVLLRG 183 Query: 228 KTGTIITVELPDGFMKLL---------AMTPIGKETFFINNDKQKMNATQFSIWFKAKAT 278 K G V + + + A++ G F+N +++ A Sbjct: 184 KGGKERVVPVGRPAITAIDNYLVRGRPALSVRGGPALFLNVRGGRLSRQSAWQVLHTAAE 243 Query: 279 KAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 KAG+ S H +R AT D GA + G +V + YT Sbjct: 244 KAGIAVAVSPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQIYT 290 >gi|288553072|ref|YP_003425007.1| integrase/recombinase [Bacillus pseudofirmus OF4] gi|288544232|gb|ADC48115.1| integrase/recombinase [Bacillus pseudofirmus OF4] Length = 321 Score = 126 bits (317), Expect = 5e-27, Method: Composition-based stats. Identities = 45/272 (16%), Positives = 95/272 (34%), Gaps = 26/272 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKSGD------FDYRKITTKHIRSGVESRKHTPSSAIQFLT 138 + ++++ S+ S + + D + + + + + + +S + ++ Sbjct: 40 KNYSLHTVKSYLSDIEDFCHFMKEHNCAAFSDVTYLFVRSYLTFLYDKAYARNSVARKIS 99 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ----QFKSFWSEGSQPRL 194 SMR LF + +R+E + N PK+ ++ +E+M F+ + R Sbjct: 100 SMRSLFHFLMREEELTRNVFAETHLPKQASKLPSFLYEEEMDELFKAFEGNTPLDKRDRA 159 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVEL------------PDGF 241 E L +G+R + + V + I + K V + D Sbjct: 160 ILELLYATGMRVGECSQLDVADIDLRIGTAFVKGKGNKERYVPIGSFACDALHEYIEDAR 219 Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299 + LL + F+N + + +A + K H +R AT + Sbjct: 220 VNLLKKGNSETKRLFLNYRGGPLTDRSIRRMLAKRVEEASMQKHIRPHDLRHSFATHLLN 279 Query: 300 AGATAHELMATYGWKTVDQAETYTK-GADRIR 330 GA + G + + + YT DR+R Sbjct: 280 NGADLRVVQELLGHEHLSTTQVYTHVTKDRLR 311 >gi|206577103|ref|YP_002241126.1| tyrosine recombinase XerC [Klebsiella pneumoniae 342] gi|206566161|gb|ACI07937.1| tyrosine recombinase XerC [Klebsiella pneumoniae 342] Length = 300 Score = 126 bits (317), Expect = 5e-27, Method: Composition-based stats. Identities = 42/259 (16%), Positives = 89/259 (34%), Gaps = 19/259 (7%) Query: 85 GSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIR--SGVESRKH-TPSSAIQFLT 138 L+ + +++ D +I ++G +++ +R + R P+S L+ Sbjct: 21 RQLSPITLTNYQRQLDALIALADEAGLKSWQQCDAAQVRSFAVRSRRAGLGPASLALRLS 80 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQPRLA 195 ++R F W V Q +A NP + PK + +D+ + + R Sbjct: 81 ALRSFFDWMVSQGELAANPAKGIAAPKIPRHLPKNIDVDDVNRLLDIDLNDPLAVRDRAM 140 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMKLLAMT------ 248 E + +GLR S+ ++HL K + + + + Sbjct: 141 LEVMYGAGLRLSELVNLDIKHLDLESGEVWVMGKGSKERRLPIGRNAVAWIEHWLDLRGL 200 Query: 249 -PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAH 305 + F++ ++++A F K G+N H +R AT ++ Sbjct: 201 FGTDDDALFLSKLGKRISARNVQKRFAEWGIKQGLNSHVHPHKLRHSFATHMLESSGDLR 260 Query: 306 ELMATYGWKTVDQAETYTK 324 + G + + YT Sbjct: 261 GVQELLGHANLSTTQIYTH 279 >gi|293404020|ref|ZP_06648014.1| integrase [Escherichia coli FVEC1412] gi|298379800|ref|ZP_06989405.1| integrase [Escherichia coli FVEC1302] gi|291428606|gb|EFF01631.1| integrase [Escherichia coli FVEC1412] gi|298279498|gb|EFI21006.1| integrase [Escherichia coli FVEC1302] Length = 293 Score = 126 bits (317), Expect = 5e-27, Method: Composition-based stats. Identities = 51/277 (18%), Positives = 98/277 (35%), Gaps = 19/277 (6%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH- 128 TL + Y K + + I++ S I R D ITTK I + + Sbjct: 12 TLHSWLDRYEKILASRGIKQKTLINYMSKIKAIRRGLPDVPLEDITTKEIAAMLNGYIDE 71 Query: 129 -TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 +SA +++ F+ A+ + ++ NP + K + R E ++ +++ S Sbjct: 72 GKAASAKLIRSTLSDAFREAIAEGHITTNPVAATRAAKSEVRRSRLTADEYLKIYQAAES 131 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE---------LP 238 RLA E + +G R D C + + ++ KTG I + + Sbjct: 132 SPCWLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAIPTALHVDALGIS 191 Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-----NKSAHGVRKFS 293 +G ET + ++ +++ S +F +G+ + H +R Sbjct: 192 MKETLDKCKEILGGETIIASTRREPLSSGTVSRYFMRARKASGLSFEGDPPTFHELR-SL 250 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 + + + G K+ A Y DR R Sbjct: 251 SARLYEKQISDKFAQHLLGHKSDTMASQY--RDDRGR 285 >gi|190572731|ref|YP_001970576.1| site-specific tyrosine recombinase XerD [Stenotrophomonas maltophilia K279a] gi|190010653|emb|CAQ44262.1| putative integrase/recombinase [Stenotrophomonas maltophilia K279a] Length = 325 Score = 126 bits (317), Expect = 5e-27, Method: Composition-based stats. Identities = 45/268 (16%), Positives = 81/268 (30%), Gaps = 30/268 (11%) Query: 86 SLAVNSRISFESYFDQIIR-----KSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSM 140 LA + S+ + + R G + + +P S + L+++ Sbjct: 40 GLARATLDSYRRDLEGLARWMDGRDGGLAGIERPGLFDYLAWRTRHGWSPRSNARLLSAL 99 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRLAF 196 R F VR+ +P ++ PK + + + + G + R Sbjct: 100 RAFFADGVRRGERGEDPSALLDPPKLPRLLPKALAERQIDALLAVPDIDSPLGLRDRAML 159 Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLAMTPIGKETF 255 E + +GLR S+ + ++ T K V L + L Sbjct: 160 ELMYAAGLRVSELVLLPATAVNLRQGVLRVTGKGSKERLVPLGEESQHWLERYLQASRPL 219 Query: 256 FINNDK-----------------QKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSAT 295 + K + F K A AG++ S HG+R AT Sbjct: 220 LVGKGKVQALADGQTPLFVEPTLHALTRQAFWHLVKRHAQVAGIDPARISPHGLRHSFAT 279 Query: 296 ISADAGATAHELMATYGWKTVDQAETYT 323 + GA L G ++ + YT Sbjct: 280 HLLNRGADLRALQMLLGHSSLSTTQIYT 307 >gi|110835195|ref|YP_694054.1| integrase/recombinase XerC [Alcanivorax borkumensis SK2] gi|122959294|sp|Q0VM16|XERC_ALCBS RecName: Full=Tyrosine recombinase xerC gi|110648306|emb|CAL17782.1| integrase/recombinase XerC [Alcanivorax borkumensis SK2] Length = 307 Score = 126 bits (316), Expect = 5e-27, Method: Composition-based stats. Identities = 32/260 (12%), Positives = 87/260 (33%), Gaps = 20/260 (7%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR---SGVESRKHTPSSAIQFLTSMR 141 L+ ++ ++ + G + +T +R + + + + + + L+++R Sbjct: 23 RRLSPHTVNGYQRDLIEARTLLGSQPWDTLTVHDMRSLAASLHRQGKSGKTIQRMLSTLR 82 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-----WSEGSQPRLAF 196 F++ +R+ NP + + PK + + + + + Sbjct: 83 TFFRYLMREGLARDNPAIDIRAPKSGKRLPKALDVDQVSHLLDAGTSNSEPLALRDQAIM 142 Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-----IITVELPDGFMKLLAMTP-- 249 E L GLR ++ + + + + G + + L + P Sbjct: 143 ELLYACGLRLAELLSLNLDSIDLHESQLLVTGKGNKTRQLPVGKPALTAVRRWLQVRPML 202 Query: 250 ---IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATA 304 + FI+ + ++++ + K A + G++ H +R AT ++ Sbjct: 203 IKSSDQNALFISKNGRRLSPSSVQQRLKRHALERGLDAHLHPHKLRHSFATHLLESSGDL 262 Query: 305 HELMATYGWKTVDQAETYTK 324 + G + + YT Sbjct: 263 RAVQELLGHADLATTQVYTH 282 >gi|322834929|ref|YP_004214956.1| tyrosine recombinase XerC [Rahnella sp. Y9602] gi|321170130|gb|ADW75829.1| tyrosine recombinase XerC [Rahnella sp. Y9602] Length = 303 Score = 126 bits (316), Expect = 5e-27, Method: Composition-based stats. Identities = 42/260 (16%), Positives = 88/260 (33%), Gaps = 21/260 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDF---DYRKITTKHIRSGVESRKH---TPSSAIQFLT 138 L+ + ++ + +I SG+ ++++ +R + K PSS ++ Sbjct: 23 RQLSPLTTTNYSRQLEALIAISGEIGISHWQQLDAPKVRMLLARSKRAGLGPSSLALRMS 82 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQPRLA 195 S+R W VRQ ++ NP + P+ + +++ + + R Sbjct: 83 SLRSFLDWLVRQGVLSANPAKGISTPRSPKHLPKNLDVDEVNKLLDIDLNDPLSVRDRAM 142 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI---------ITVELPDGFMKLLA 246 E + GLR S+ +H+ ++ G+ + L + Sbjct: 143 LEVMYGGGLRLSELVGIDCKHIDMASGEVRVLGKGSKERKVPIGRTAVIWLEHWLERRAD 202 Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATA 304 P F ++ +++A F K GVN H +R AT ++ Sbjct: 203 FNPQDDAMFL-SSKGSRISARNVQKRFAEWGVKQGVNSHIHPHKLRHSFATHVLESSGDL 261 Query: 305 HELMATYGWKTVDQAETYTK 324 + G + + YT Sbjct: 262 RAVQELLGHANLSTTQIYTH 281 >gi|50842870|ref|YP_056097.1| site-specific tyrosine recombinase XerD [Propionibacterium acnes KPA171202] gi|289425573|ref|ZP_06427350.1| tyrosine recombinase XerD [Propionibacterium acnes SK187] gi|289428211|ref|ZP_06429907.1| tyrosine recombinase XerD [Propionibacterium acnes J165] gi|295130925|ref|YP_003581588.1| tyrosine recombinase XerD [Propionibacterium acnes SK137] gi|50840472|gb|AAT83139.1| site-specific recombinase [Propionibacterium acnes KPA171202] gi|289154551|gb|EFD03239.1| tyrosine recombinase XerD [Propionibacterium acnes SK187] gi|289158592|gb|EFD06799.1| tyrosine recombinase XerD [Propionibacterium acnes J165] gi|291376433|gb|ADE00288.1| tyrosine recombinase XerD [Propionibacterium acnes SK137] gi|313764051|gb|EFS35415.1| tyrosine recombinase XerD [Propionibacterium acnes HL013PA1] gi|313792446|gb|EFS40539.1| tyrosine recombinase XerD [Propionibacterium acnes HL110PA1] gi|313801509|gb|EFS42758.1| tyrosine recombinase XerD [Propionibacterium acnes HL110PA2] gi|313807151|gb|EFS45646.1| tyrosine recombinase XerD [Propionibacterium acnes HL087PA2] gi|313809643|gb|EFS47379.1| tyrosine recombinase XerD [Propionibacterium acnes HL083PA1] gi|313813282|gb|EFS50996.1| tyrosine recombinase XerD [Propionibacterium acnes HL025PA1] gi|313816401|gb|EFS54115.1| tyrosine recombinase XerD [Propionibacterium acnes HL059PA1] gi|313819347|gb|EFS57061.1| tyrosine recombinase XerD [Propionibacterium acnes HL046PA2] gi|313819996|gb|EFS57710.1| tyrosine recombinase XerD [Propionibacterium acnes HL036PA1] gi|313823212|gb|EFS60926.1| tyrosine recombinase XerD [Propionibacterium acnes HL036PA2] gi|313825000|gb|EFS62714.1| tyrosine recombinase XerD [Propionibacterium acnes HL063PA1] gi|313827302|gb|EFS65016.1| tyrosine recombinase XerD [Propionibacterium acnes HL063PA2] gi|313829963|gb|EFS67677.1| tyrosine recombinase XerD [Propionibacterium acnes HL007PA1] gi|313833033|gb|EFS70747.1| tyrosine recombinase XerD [Propionibacterium acnes HL056PA1] gi|313838270|gb|EFS75984.1| tyrosine recombinase XerD [Propionibacterium acnes HL086PA1] gi|314914912|gb|EFS78743.1| tyrosine recombinase XerD [Propionibacterium acnes HL005PA4] gi|314917863|gb|EFS81694.1| tyrosine recombinase XerD [Propionibacterium acnes HL050PA1] gi|314919752|gb|EFS83583.1| tyrosine recombinase XerD [Propionibacterium acnes HL050PA3] gi|314924835|gb|EFS88666.1| tyrosine recombinase XerD [Propionibacterium acnes HL036PA3] gi|314930006|gb|EFS93837.1| tyrosine recombinase XerD [Propionibacterium acnes HL067PA1] gi|314956418|gb|EFT00730.1| tyrosine recombinase XerD [Propionibacterium acnes HL027PA1] gi|314957287|gb|EFT01390.1| tyrosine recombinase XerD [Propionibacterium acnes HL002PA1] gi|314960608|gb|EFT04710.1| tyrosine recombinase XerD [Propionibacterium acnes HL002PA2] gi|314963140|gb|EFT07240.1| tyrosine recombinase XerD [Propionibacterium acnes HL082PA1] gi|314967736|gb|EFT11835.1| tyrosine recombinase XerD [Propionibacterium acnes HL037PA1] gi|314972871|gb|EFT16968.1| tyrosine recombinase XerD [Propionibacterium acnes HL053PA1] gi|314975706|gb|EFT19801.1| tyrosine recombinase XerD [Propionibacterium acnes HL045PA1] gi|314978092|gb|EFT22186.1| tyrosine recombinase XerD [Propionibacterium acnes HL072PA2] gi|314984110|gb|EFT28202.1| tyrosine recombinase XerD [Propionibacterium acnes HL005PA1] gi|314986253|gb|EFT30345.1| tyrosine recombinase XerD [Propionibacterium acnes HL005PA2] gi|314989533|gb|EFT33624.1| tyrosine recombinase XerD [Propionibacterium acnes HL005PA3] gi|315078203|gb|EFT50246.1| tyrosine recombinase XerD [Propionibacterium acnes HL053PA2] gi|315080906|gb|EFT52882.1| tyrosine recombinase XerD [Propionibacterium acnes HL078PA1] gi|315086002|gb|EFT57978.1| tyrosine recombinase XerD [Propionibacterium acnes HL002PA3] gi|315088279|gb|EFT60255.1| tyrosine recombinase XerD [Propionibacterium acnes HL072PA1] gi|315095700|gb|EFT67676.1| tyrosine recombinase XerD [Propionibacterium acnes HL038PA1] gi|315098208|gb|EFT70184.1| tyrosine recombinase XerD [Propionibacterium acnes HL059PA2] gi|315101638|gb|EFT73614.1| tyrosine recombinase XerD [Propionibacterium acnes HL046PA1] gi|315105953|gb|EFT77929.1| tyrosine recombinase XerD [Propionibacterium acnes HL030PA1] gi|315109457|gb|EFT81433.1| tyrosine recombinase XerD [Propionibacterium acnes HL030PA2] gi|327327897|gb|EGE69671.1| tyrosine recombinase XerD [Propionibacterium acnes HL096PA3] gi|327330004|gb|EGE71758.1| tyrosine recombinase XerD [Propionibacterium acnes HL097PA1] gi|327330036|gb|EGE71789.1| tyrosine recombinase XerD [Propionibacterium acnes HL096PA2] gi|327442733|gb|EGE89387.1| tyrosine recombinase XerD [Propionibacterium acnes HL043PA1] gi|327443869|gb|EGE90523.1| tyrosine recombinase XerD [Propionibacterium acnes HL043PA2] gi|327443937|gb|EGE90591.1| tyrosine recombinase XerD [Propionibacterium acnes HL013PA2] gi|327452342|gb|EGE98996.1| tyrosine recombinase XerD [Propionibacterium acnes HL087PA3] gi|327452783|gb|EGE99437.1| tyrosine recombinase XerD [Propionibacterium acnes HL083PA2] gi|327453535|gb|EGF00190.1| tyrosine recombinase XerD [Propionibacterium acnes HL092PA1] gi|328752650|gb|EGF66266.1| tyrosine recombinase XerD [Propionibacterium acnes HL025PA2] gi|328753798|gb|EGF67414.1| tyrosine recombinase XerD [Propionibacterium acnes HL087PA1] gi|328755026|gb|EGF68642.1| tyrosine recombinase XerD [Propionibacterium acnes HL020PA1] gi|328761444|gb|EGF74970.1| tyrosine recombinase XerD [Propionibacterium acnes HL099PA1] Length = 306 Score = 126 bits (316), Expect = 5e-27, Method: Composition-based stats. Identities = 41/268 (15%), Positives = 89/268 (33%), Gaps = 29/268 (10%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDF------DYRKITTKHIRSGVESRKHTPSSAIQFLT 138 L+ N+ ++ + G + ++ + R ++ P+S + + Sbjct: 20 RGLSDNTVQAYRRDLLRYQEYLGSRGIGSLAEVTRVDVEEFRRHLDHIGLAPASVTRCVV 79 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRL 194 ++R L ++AV + + + R + + + ++ + EG + Sbjct: 80 AVRNLHRFAVGSGQLQADVTAGMSPGTRSRRLPKALSMDQVESLLAAPDTSTVEGLRDAA 139 Query: 195 AFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKT-QKTGTIITVELPDGFMKLLAMTP 249 E L +G R S+ C V + + ++ K V L K + Sbjct: 140 LLELLYGTGARVSEVCALDVDDIRPVLDDPDLGLRLIGKGDKERIVPLGSYAAKAVDAWL 199 Query: 250 I-----------GKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSAT 295 I G+ +N ++++ + AG++ S H +R AT Sbjct: 200 IRGRPAWAEIGNGEHALLLNTRGRRLSRQSAWAVIRRAGEAAGLDVEHLSPHSLRHSYAT 259 Query: 296 ISADAGATAHELMATYGWKTVDQAETYT 323 D GA + G +V + YT Sbjct: 260 HLLDGGADVRVVQELLGHSSVTTTQIYT 287 >gi|229180107|ref|ZP_04307451.1| Tyrosine recombinase xerC [Bacillus cereus 172560W] gi|228603316|gb|EEK60793.1| Tyrosine recombinase xerC [Bacillus cereus 172560W] Length = 299 Score = 126 bits (316), Expect = 5e-27, Method: Composition-based stats. Identities = 43/272 (15%), Positives = 99/272 (36%), Gaps = 26/272 (9%) Query: 85 GSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIR---SGVESRKHTPSSAIQFLT 138 + + + S+++ + + ++ G + +T +R + + K S + ++ Sbjct: 18 RNYSKYTIASYQNDLEHFVQFMKREGISSFLDVTYADVRLYLTMLHDEKLARKSVARKVS 77 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRL 194 S+R L+++ +R+ Y NP PK++ + E++++ G + + Sbjct: 78 SLRSLYRFLMREGYRKDNPFALASLPKKELSIPKFLYAEELEELFEVSDTETPLGQRNQA 137 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE------------LPDGF 241 E + +G+R S+ + + + +I K + + +G Sbjct: 138 LLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQRYIPFGSYAQDSLITYIENGR 197 Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299 +L+ T F+N + + KA + S H +R AT D Sbjct: 198 KQLVNKTDEDSHMVFLNAKGTPLTSRGVRYVLNELIKKASLTMRISPHMLRHTFATHMLD 257 Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRL 331 GA + G + + + YT + RL Sbjct: 258 EGADLRTVQELLGHENLSTTQIYTH-VSKERL 288 >gi|288959362|ref|YP_003449703.1| phage integrase [Azospirillum sp. B510] gi|288911670|dbj|BAI73159.1| phage integrase [Azospirillum sp. B510] Length = 418 Score = 126 bits (316), Expect = 5e-27, Method: Composition-based stats. Identities = 67/350 (19%), Positives = 110/350 (31%), Gaps = 28/350 (8%) Query: 7 LPPFVTKERTRHGKIIYYFRKGHGRRI--------RLPYPHESTFIPAYMSALTGSTPKR 58 L FV K K + GR R P L S + Sbjct: 29 LKGFVLKVTPSGAKTYLVVYRMGGRDTPKQKVTIGRHGSPWTPDKARTEAEKLLASVKRG 88 Query: 59 EYINSPRKKPT----TLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRK 113 + +K T T+ L +Y ++ F ++ I G K Sbjct: 89 TDPAAEKKARTKRGATVADLADDYLTQHVDVKNKPSTATGFRRLVEKEIKPPLGKLQVDK 148 Query: 114 ITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVA--INPCLSVERPKRKTEGI 171 +T I + TP A Q L + +F A NPC +ER + Sbjct: 149 VTRADIAKLHHDMRDTPRQANQTLAVLSKMFSLAEVWGLRPDGTNPCKKIERYRENKRE- 207 Query: 172 RPWTKEDMQQFKSFWSE-------GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224 R + ++++ +E A LL +G R + + + I Sbjct: 208 RFLSVPEVERLGKALAELGETMEVHETILSAIRLLLLTGCRVGEVLALRWVDVVDGAVLI 267 Query: 225 KTQKTGTIITVELPDGFMKLLAMTPIGKETFFI--NNDKQKMNATQFSIWFKAKATKAGV 282 + K G + + L+ P E + + + T S ++ +KAG+ Sbjct: 268 RDAKAGGRVH-PIGALAQAFLSELPRESEWVLPAPRSPRNPLPNTTISHGWEVVRSKAGL 326 Query: 283 -NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT-KGADRIR 330 + H +R T + AGA A + G KT+ Y + AD IR Sbjct: 327 EDVRLHDLRHTVGTYAGQAGANAFLVRDKLGHKTLAMTGRYVNRDADPIR 376 >gi|91216360|ref|ZP_01253327.1| putative tyrosine recombinase [Psychroflexus torquis ATCC 700755] gi|91185498|gb|EAS71874.1| putative tyrosine recombinase [Psychroflexus torquis ATCC 700755] Length = 298 Score = 126 bits (316), Expect = 5e-27, Method: Composition-based stats. Identities = 45/262 (17%), Positives = 88/262 (33%), Gaps = 24/262 (9%) Query: 85 GSLAVNSRISFE----SYFDQIIRKSGDFDYRKITTKHIRSGVES--RKHTPSSAIQFLT 138 LA N+ ++ + I + + + ++S + S + S + ++ Sbjct: 18 RGLADNTVQNYRLDILKLANYISEYNATLTPELVDEETLQSFIYSISKVINERSQARLIS 77 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRL 194 ++ F + + ++Y NP +E P+ + +++ Q +G + + Sbjct: 78 GLKSFFDYLIFEDYRKTNPLELIESPRLGRRLPDTLSTDEIDQLVEAIDLSHLQGHRNKA 137 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELP-----------DGFM 242 E L GLR S+ + L IK K V + + F Sbjct: 138 IIETLYGCGLRVSELVELKISDLFFEKGFIKVIGKGNKERLVPINTYTQKFISIYKEEFR 197 Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300 L K+ F+N ++ K A K + K S H R AT + Sbjct: 198 IHLNQQSEFKDILFLNRRGAQLTRAMIFTIVKQLAKKINLQKNISPHTFRHSFATHLLEN 257 Query: 301 GATAHELMATYGWKTVDQAETY 322 GA + G +++ E Y Sbjct: 258 GANLRVIQQMLGHESITTTEIY 279 >gi|21230129|ref|NP_636046.1| site-specific tyrosine recombinase XerD [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66769880|ref|YP_244642.1| site-specific tyrosine recombinase XerD [Xanthomonas campestris pv. campestris str. 8004] gi|188993095|ref|YP_001905105.1| site-specific tyrosine recombinase XerD [Xanthomonas campestris pv. campestris str. B100] gi|34222916|sp|Q8PCQ9|XERD_XANCP RecName: Full=Tyrosine recombinase xerD gi|21111659|gb|AAM39970.1| integrase/recombinase [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66575212|gb|AAY50622.1| integrase/recombinase [Xanthomonas campestris pv. campestris str. 8004] gi|167734855|emb|CAP53066.1| tyrosine recombinase [Xanthomonas campestris pv. campestris] Length = 323 Score = 126 bits (316), Expect = 5e-27, Method: Composition-based stats. Identities = 47/273 (17%), Positives = 93/273 (34%), Gaps = 29/273 (10%) Query: 85 GSLAVNSRISFESYFDQIIR-----KSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139 +A + S+ + + R G + ++ P S + L++ Sbjct: 38 QGVARQTLDSYRRDLEGLARWRDGAGGGLQGADRSALFDYLRWRTEARYAPRSNARLLST 97 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLA 195 +R + +R + +P ++ P+ + T+ + + G+ + R Sbjct: 98 LRGFYALCLRDGVRSDDPTALLDPPRLPRSLPKALTESQIDALLAAPEIGTPLGLRDRAM 157 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLA-----MTP 249 E + +GLR S+ + ++ T K V L + L P Sbjct: 158 LELMYAAGLRVSELVTLPAVAINLRQGVLRVTGKGSKERLVPLGEESQHWLERYLETARP 217 Query: 250 I-----------GKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSAT 295 G+ FI+ ++ ++ QF K A AG++ S HG+R AT Sbjct: 218 TLSERKAVPAVDGQVPLFIDAARRPLSRQQFWGLVKRYAAVAGIDPDTVSPHGLRHSFAT 277 Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADR 328 + GA L G ++ + YT A + Sbjct: 278 HLLNHGADLRALQMLLGHSSLSTTQIYTLVARQ 310 >gi|75763959|ref|ZP_00743586.1| Integrase/recombinase (XerD/RipX family) [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74488552|gb|EAO52141.1| Integrase/recombinase (XerD/RipX family) [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 302 Score = 126 bits (316), Expect = 5e-27, Method: Composition-based stats. Identities = 43/272 (15%), Positives = 97/272 (35%), Gaps = 26/272 (9%) Query: 85 GSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIRSGV---ESRKHTPSSAIQFLT 138 + + + S+++ + + + G + +T +R + K S + ++ Sbjct: 21 RNYSKYTIASYQNDLEHFVQFMEREGISSFLDVTYADVRLYLTTLHDEKLARKSVARKVS 80 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRL 194 S+R L+++ +R+ Y NP PK++ + E++++ G + + Sbjct: 81 SLRSLYRFLMREGYRKDNPFALASLPKKELSIPKFLYAEELEELFEVSDTETPLGQRNQA 140 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE------------LPDGF 241 E + +G+R S+ + + + +I K + + +G Sbjct: 141 LLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQRYIPFGSYAQDSLITYIENGR 200 Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299 +L+ T F+N + + KA + S H +R AT D Sbjct: 201 KQLVNKTDEDSRMVFLNAKGTPLTSRGVRYVLNELIKKASLTMRISPHMLRHTFATHMLD 260 Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRL 331 GA + G + + + YT + RL Sbjct: 261 EGADLRTVQELLGHENLSTTQIYTH-VSKERL 291 >gi|313205824|ref|YP_004045001.1| integrase family protein [Riemerella anatipestifer DSM 15868] gi|312445140|gb|ADQ81495.1| integrase family protein [Riemerella anatipestifer DSM 15868] gi|315022781|gb|EFT35805.1| Probable integrase [Riemerella anatipestifer RA-YM] gi|325336737|gb|ADZ13011.1| Integrase, catalytic core, phage [Riemerella anatipestifer RA-GD] Length = 358 Score = 126 bits (316), Expect = 5e-27, Method: Composition-based stats. Identities = 40/261 (15%), Positives = 97/261 (37%), Gaps = 18/261 (6%) Query: 76 SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHTPS 131 +++ + N+ ++ F Q++ DF +++ + +RS E+ K + + Sbjct: 87 ELFQEHLKLKGYSRNTLRTYAVEFAQLLYVLKDFPVDELSEERLRSYFLYCFENLKLSEA 146 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191 + +++ F+ A+ ++ + + + RPK+K + + K+ + + + + Sbjct: 147 EINSRINAIKFYFEQALHRKKMFFD----IPRPKKKKQLPKSLNKKQILKIFEVTT-NLK 201 Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK----TQKTGTIITVE--LPDGFMKLL 245 R + GLR S+ ++ + + ++ K ++ + + Sbjct: 202 HRCMLQLCYGMGLRVSEIVNLKLEDICSETMRVRIENAKGKKDRMVPLPESILPELRAYY 261 Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGAT 303 K F + FK KAG+NK+ HG+R AT + G Sbjct: 262 REYKPKK-YLFEGQYGGMYSVRSVQSVFKTAMRKAGINKTVGIHGLRHSYATHLLEMGTD 320 Query: 304 AHELMATYGWKTVDQAETYTK 324 + G + + YT+ Sbjct: 321 IRYIQEFLGHNNIKTTQIYTQ 341 >gi|313771918|gb|EFS37884.1| tyrosine recombinase XerD [Propionibacterium acnes HL074PA1] Length = 306 Score = 126 bits (316), Expect = 6e-27, Method: Composition-based stats. Identities = 41/268 (15%), Positives = 89/268 (33%), Gaps = 29/268 (10%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDF------DYRKITTKHIRSGVESRKHTPSSAIQFLT 138 L+ N+ ++ + G + ++ + R ++ P+S + + Sbjct: 20 RGLSDNTVQAYRRDLLRYQEYLGSRGIGSLAEVTRVDVEEFRRHLDHIGLAPASVTRCVV 79 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRL 194 ++R L ++AV + + + R + + + ++ + EG + Sbjct: 80 AVRNLHRFAVGSGQLQADVTAGMSPGTRSRRLPKALSMDQVESLLAAPDTSTVEGLRDAA 139 Query: 195 AFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKT-QKTGTIITVELPDGFMKLLAMTP 249 E L +G R S+ C V + + ++ K V L K + Sbjct: 140 LLELLYGTGARVSEVCALDVDDIRPVLDDPDLGLRLIGKGDKERIVPLGSYAAKAVDAWL 199 Query: 250 I-----------GKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSAT 295 I G+ +N ++++ + AG++ S H +R AT Sbjct: 200 IRGRPAWAEIGNGEHALLLNTRGRRLSRQSAWAVIRRAGEAAGLDVEHLSPHSLRHSYAT 259 Query: 296 ISADAGATAHELMATYGWKTVDQAETYT 323 D GA + G +V + YT Sbjct: 260 HLLDGGADIRVVQELLGHSSVTTTQIYT 287 >gi|71274688|ref|ZP_00650976.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella fastidiosa Dixon] gi|71276271|ref|ZP_00652549.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella fastidiosa Dixon] gi|71900963|ref|ZP_00683076.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella fastidiosa Ann-1] gi|71902016|ref|ZP_00684061.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella fastidiosa Ann-1] gi|170730075|ref|YP_001775508.1| phage-related integrase [Xylella fastidiosa M12] gi|71162879|gb|EAO12603.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella fastidiosa Dixon] gi|71164420|gb|EAO14134.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella fastidiosa Dixon] gi|71728216|gb|EAO30402.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella fastidiosa Ann-1] gi|71729268|gb|EAO31386.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella fastidiosa Ann-1] gi|167964868|gb|ACA11878.1| phage-related integrase [Xylella fastidiosa M12] Length = 339 Score = 126 bits (316), Expect = 6e-27, Method: Composition-based stats. Identities = 63/333 (18%), Positives = 116/333 (34%), Gaps = 28/333 (8%) Query: 7 LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66 +P F + + + G + YY+ G R P Y A+ + E+ Sbjct: 11 IPRFRVRPQ-KSGVVYYYYDHGGKPRKETPLG------RDYGLAIQ-RWAELEHAQITPA 62 Query: 67 KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVE 124 T + + YR + A N++ Y + +++ D + I +IR ++ Sbjct: 63 IAVTFRHVAERYRAEVI-PTKAYNTQRMHHIYLNYLLKFFDDPPAPFESIKPVNIRQYLD 121 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVA-INPCLSVERPKRKTEGIRPWTKEDMQQFK 183 R SA + + L+ WA + NPC + R K + + D ++ Sbjct: 122 WRTSKV-SANREVALFSHLWNWARSKGITDLPNPCGGIRRNKERGRDVYI----DDTTYR 176 Query: 184 SFWSEGSQP-RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242 + + Q R A + +G R SD +H+ N I KTG + + + Sbjct: 177 AVYQAADQTLRDAMDLAYLTGQRVSDVVNMDERHIVNGALEICQAKTGVKLAIAITGELA 236 Query: 243 KLLAMTPIGKE-------TFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKF 292 L+ K ++ +N + + F+ AG+ K +R Sbjct: 237 VLIKRILARKRGMKLRSTRLIVDEKGLGLNWKKLAYRFRKVRAAAGIAKEVFQFRDLRAK 296 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKG 325 +AT AD + A G +V E Y + Sbjct: 297 AATDKADLAGDMRQAQAQLGHASVTMTEHYVRK 329 >gi|289432900|ref|YP_003462773.1| tyrosine recombinase XerD [Dehalococcoides sp. GT] gi|288946620|gb|ADC74317.1| tyrosine recombinase XerD [Dehalococcoides sp. GT] Length = 302 Score = 126 bits (316), Expect = 6e-27, Method: Composition-based stats. Identities = 41/283 (14%), Positives = 97/283 (34%), Gaps = 35/283 (12%) Query: 85 GSLAVNSRISFESYFDQI-------IRKSGDFD-YRKITTKHIRSGVESRKHT---PSSA 133 + N+ ++E+ Q+ KSG + T + + + + K ++ Sbjct: 16 KGFSENTSEAYENDLRQMTTFADKEAAKSGKIPGWDNFTRQTMLAYMLDLKERNYAITTV 75 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-----SE 188 ++ + + + F + V + + NP ++ PK + ++ + SE Sbjct: 76 VRKMAAAKSFFNFMVAEGKLKENPTENISTPKVGKPLPDAISISQVRALLNQPVKSGSSE 135 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLA- 246 + + E L SG+R ++ + + ++ K + + + + Sbjct: 136 AKRDKAMLELLYASGMRVTELVNLNMLDVDLKEGFVRCFGKGRKERMIPIYPQAAQSVQE 195 Query: 247 ---------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSAT 295 + ++ F+N ++ KA A +AG++ + H +R AT Sbjct: 196 YLNEIRPNLVRAEAEKALFLNRRGDRLTRQGLWQILKAYAREAGLDDVVTPHTLRHSFAT 255 Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRR 338 GA + G + + YT L ++ RR Sbjct: 256 HMLSGGADLRSVQELLGHANISTTQIYTH------LTSEHIRR 292 >gi|322421383|ref|YP_004200606.1| tyrosine recombinase XerC [Geobacter sp. M18] gi|320127770|gb|ADW15330.1| tyrosine recombinase XerC [Geobacter sp. M18] Length = 292 Score = 126 bits (316), Expect = 6e-27, Method: Composition-based stats. Identities = 45/258 (17%), Positives = 96/258 (37%), Gaps = 18/258 (6%) Query: 85 GSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSGVES--RKHTPSSAIQFLTS 139 +++ ++ ++ S +Q + + G+ ++ IR + + H SS + L++ Sbjct: 16 RNVSPHTLAAYRSDLEQFASSLSRHGEPLPEQVDHLAIRRYLAQLHKGHAKSSIGRKLSA 75 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----QQFKSFWSEGSQPRLA 195 +R LF++ +R+ + NP V PK++ + + + + R Sbjct: 76 IRALFRFLLREGRLEKNPAELVSTPKKEKRLPFHLNIDQVSALVEAPAGAAGLPLRDRAV 135 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAM------T 248 E L G+R S+ V L + + K G V + K L+ Sbjct: 136 LETLYSCGIRVSELTGMNVGDLDLHQALARVMGKGGKERIVPVGSFARKALSAYLEERGD 195 Query: 249 PIGKETFFINNDKQKMNATQFSIWF-KAKATKAGVNK-SAHGVRKFSATISADAGATAHE 306 P + +N+ ++ + + A + K S H +R AT + GA Sbjct: 196 PPPCDPLILNSRGGRLTRRSVARIVDRHMLMIAAMRKVSPHTLRHTFATHLLEGGADLRC 255 Query: 307 LMATYGWKTVDQAETYTK 324 + G ++ + YT+ Sbjct: 256 IQELLGHASLSTTQKYTQ 273 >gi|188586142|ref|YP_001917687.1| integrase family protein [Natranaerobius thermophilus JW/NM-WN-LF] gi|179350829|gb|ACB85099.1| integrase family protein [Natranaerobius thermophilus JW/NM-WN-LF] Length = 279 Score = 126 bits (316), Expect = 6e-27, Method: Composition-based stats. Identities = 41/258 (15%), Positives = 97/258 (37%), Gaps = 11/258 (4%) Query: 88 AVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFK 145 + ++ ++E Y + + K+ + + E + + + + ++ F Sbjct: 19 SASTLETYERYIRKFLMSWKNDLSEVTDDDIDDFLNEYEEKGYNSRTIHVIIAALHDFFS 78 Query: 146 WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLR 205 ++Y+++ P + VE P + + +P ++ + + K+ + + R E L ++G+R Sbjct: 79 HLKYKKYISVIPTVDVEIPNHEKKLPKPLSEIKIIKLKNEAKDHLRDRAIIEVLHWTGVR 138 Query: 206 CSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELP----DGFMKLLAMTPIGKETFFINN 259 S+ ++ + I+ K V + ++ L FI Sbjct: 139 VSELINIRIEDIWWDTREIWIRKGKGLKERNVIINYICKQYLIEYLDTRSDDIPYLFITK 198 Query: 260 DKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVD 317 K+ + A KAG+ N + H R T + GA + G + + Sbjct: 199 RKRPFTRQGVNKLLNKYAIKAGIKENVTPHMFRHTFITDLINKGAEEGVVADLAGHEDIK 258 Query: 318 QAETYTKGA-DRIRLGIK 334 + + YT+ A R +L + Sbjct: 259 RLKDYTEVARKRKKLEYE 276 >gi|330992094|ref|ZP_08316043.1| Shufflon-specific DNA recombinase [Gluconacetobacter sp. SXCC-1] gi|329761115|gb|EGG77610.1| Shufflon-specific DNA recombinase [Gluconacetobacter sp. SXCC-1] Length = 393 Score = 126 bits (316), Expect = 6e-27, Method: Composition-based stats. Identities = 59/320 (18%), Positives = 115/320 (35%), Gaps = 18/320 (5%) Query: 21 IIYYFRKGHGRRIRL--PYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT---LKWLI 75 +++Y G RR + P + + N+ R + T + Sbjct: 46 VVHYRANGRFRRYTIGHHGPWTADKARDEAIKILARVKDGNDPNTERGEERTSPTISQFC 105 Query: 76 SEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134 + + L ++ ++ D II+K G +T + + + +H P A Sbjct: 106 KTFIERHVKTHLKSTTQAEYQRAIDLFIIKKIGSRMVATLTHSDVVAFHHAYRHIPYQAN 165 Query: 135 QFLTSMRVLFKWAVRQEYVAIN--PCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192 + L + +F A+ N PC V+R K + R T E+ Q+ +G Sbjct: 166 RTLGVLSKMFSLAILWGVRTDNVNPCRGVKRYKEQKRE-RYLTTEEHQRLGKALDDGRSA 224 Query: 193 RL----AFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDGFMKLL- 245 AF+ LL +G R + R +++ I + K G TV+L + + LL Sbjct: 225 MPEAVNAFQLLLLTGCRLREIQRLKWEYVFLDEGIIRLPDSKNGAR-TVQLGESAIGLLG 283 Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATA 304 +T + + I K + T ++ +AG+ + H +R A+ + + G Sbjct: 284 DITRVEGNPYVITGRKDGGHLTDLEKPWRRIRKEAGLHDVRIHDLRHSFASDALELGEDL 343 Query: 305 HELMATYGWKTVDQAETYTK 324 + G + + Y Sbjct: 344 VMIGKLLGHRDLKSTARYAH 363 >gi|237717383|ref|ZP_04547864.1| integrase [Bacteroides sp. D1] gi|229443366|gb|EEO49157.1| integrase [Bacteroides sp. D1] Length = 292 Score = 126 bits (316), Expect = 6e-27, Method: Composition-based stats. Identities = 50/276 (18%), Positives = 105/276 (38%), Gaps = 24/276 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIR----KSGDFDYRKITTKHIRSGV---ES 125 +I + + + + + +++ Q+ + G F+ ++ + IR + Sbjct: 1 MIESFLDYLQYERNYSEKTVLAYGEDIKQLQEFAQEEYGKFNPLEVEAELIREWIVSLMD 60 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + +T +S + L+S+R +K+ +RQ I+P ++ PK K + +M + Sbjct: 61 KGYTSTSVNRKLSSLRTFYKYLLRQGETTIDPLRKIKGPKNKKPLPVFLKENEMNRLLDE 120 Query: 186 WS-----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPD 239 +G + RL E +G+R S+ + + + +K T K + D Sbjct: 121 TDFGEGFKGCRDRLIIEMFYATGMRLSELIGLDNKDVDFSASLLKVTGKRNKQRLIPFGD 180 Query: 240 GFMKLL--------AMTPIGKETFFINNDKQKMNATQFSIWFKA-KATKAGVNK-SAHGV 289 +L+ P E FFI + +++ K + A + K S H + Sbjct: 181 ELQELMLEYINVRNETIPERSEAFFIRENGERLYKNLVYNLVKRNLSKVATLKKKSPHVL 240 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 R AT + A + G +++ E YT Sbjct: 241 RHTFATTMLNNEAELGAVKELLGHESITTTEIYTHA 276 >gi|163941569|ref|YP_001646453.1| site-specific tyrosine recombinase XerC [Bacillus weihenstephanensis KBAB4] gi|229013014|ref|ZP_04170179.1| Tyrosine recombinase xerC [Bacillus mycoides DSM 2048] gi|229134638|ref|ZP_04263448.1| Tyrosine recombinase xerC [Bacillus cereus BDRD-ST196] gi|229168570|ref|ZP_04296293.1| Tyrosine recombinase xerC [Bacillus cereus AH621] gi|163863766|gb|ABY44825.1| tyrosine recombinase XerC [Bacillus weihenstephanensis KBAB4] gi|228614976|gb|EEK72078.1| Tyrosine recombinase xerC [Bacillus cereus AH621] gi|228648899|gb|EEL04924.1| Tyrosine recombinase xerC [Bacillus cereus BDRD-ST196] gi|228748268|gb|EEL98128.1| Tyrosine recombinase xerC [Bacillus mycoides DSM 2048] Length = 301 Score = 126 bits (316), Expect = 6e-27, Method: Composition-based stats. Identities = 43/272 (15%), Positives = 97/272 (35%), Gaps = 26/272 (9%) Query: 85 GSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIRSGV---ESRKHTPSSAIQFLT 138 + + + S+++ + + + G + +T +R + +K S + ++ Sbjct: 20 RNYSKYTIASYQNDLEHFVQFMEREGISSFLDVTYADVRLYLTTLHDQKLARKSVARKVS 79 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRL 194 S+R L+++ +R+ Y NP PK++ + E++++ G + + Sbjct: 80 SLRSLYRFLMREGYQKDNPFALASLPKKELSIPKFLYAEELEELFEVSDTGAPLGQRNQA 139 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE------------LPDGF 241 E + +G+R S+ + + + +I K + + +G Sbjct: 140 LLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQRYIPFGSYAQDALITYIENGR 199 Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299 +L T F+N + + KA + S H +R AT D Sbjct: 200 KQLAQKTEEQSHMVFLNAKGKPLTDQGVRYVLNELIKKASLTMRISPHMLRHTFATHMLD 259 Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRL 331 GA + G + + + YT + RL Sbjct: 260 EGADLRTVQELLGHENLSTTQIYTH-VSKERL 290 >gi|83955532|ref|ZP_00964163.1| tyrosine recombinase XerD [Sulfitobacter sp. NAS-14.1] gi|83840176|gb|EAP79351.1| tyrosine recombinase XerD [Sulfitobacter sp. NAS-14.1] Length = 324 Score = 126 bits (316), Expect = 6e-27, Method: Composition-based stats. Identities = 47/286 (16%), Positives = 102/286 (35%), Gaps = 32/286 (11%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGV---ES 125 L W+ + A A N+++++ D+ + K I + + ++ Sbjct: 6 LHWISTFLEAQAAELGAATNTQLAYGRDLKDFDSFLARRALDFVTVGRKDIEAYLVWCDA 65 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + S+ + L++++ L+++A + + NP + + P + + +++++ Q Sbjct: 66 QGLAKSTRARRLSAIKQLYRFAFEEGWRTDNPAIQIAGPGQDKRLPKVLSEDEVDQLLDA 125 Query: 186 W-------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVEL 237 S+ + E L +G+R S+ V + + + K G V L Sbjct: 126 ARHSGRNTSDQLRNTCLMELLYATGMRVSELVSLRVNAARGDPRLLLIMGKGGKERLVPL 185 Query: 238 PDGFMKLLAMTPIGKET--------------FFINNDKQK--MNATQFSIWFKAKATKAG 281 D + LA + ++ + + + +F + K A AG Sbjct: 186 SDPSREALAAWLVQRDNTDEAAQAKGKPASIYLFPSRGSAGYLTRHRFYLLIKEFALTAG 245 Query: 282 VN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 V+ + H +R AT GA + G V E YT Sbjct: 246 VDPSKVTPHTLRHAFATHLLANGADLRAIQTMLGHADVATTEIYTH 291 >gi|283852933|ref|ZP_06370193.1| tyrosine recombinase XerD [Desulfovibrio sp. FW1012B] gi|283571691|gb|EFC19691.1| tyrosine recombinase XerD [Desulfovibrio sp. FW1012B] Length = 309 Score = 126 bits (316), Expect = 6e-27, Method: Composition-based stats. Identities = 43/226 (19%), Positives = 81/226 (35%), Gaps = 15/226 (6%) Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 + +R S + L+++R F +A ++++ +P +E PK ++ED+ + Sbjct: 70 LRTRGLQSRSLARHLSALRGFFAFAAAEKWLPESPAALIENPKLPRLLPDVLSREDVARL 129 Query: 183 K----SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-EL 237 + G + R E L +GLR S+ + ++ G + + Sbjct: 130 LDAPDTATPLGYRDRTMLELLYAAGLRVSELVGLTLGDYDAQAGLLRVFGKGAKERLTPI 189 Query: 238 PDGFMKLLA--------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAH 287 + L+ ++ F+N Q ++ KA A AGV S H Sbjct: 190 HALAREFLSTYILTMRGAFHPREQFIFLNRSGQGLSRQAVWKKIKAHALAAGVSTRISPH 249 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 +R AT + GA + G + E YT L + Sbjct: 250 SLRHSFATHLLEGGADLRTVQMLLGHADISATEIYTHVQAGRLLAV 295 >gi|254480874|ref|ZP_05094120.1| site-specific recombinase, phage integrase family [marine gamma proteobacterium HTCC2148] gi|214038669|gb|EEB79330.1| site-specific recombinase, phage integrase family [marine gamma proteobacterium HTCC2148] Length = 392 Score = 126 bits (316), Expect = 6e-27, Method: Composition-based stats. Identities = 58/349 (16%), Positives = 117/349 (33%), Gaps = 20/349 (5%) Query: 10 FVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69 + + ++ GK Y G I L + ++ A + +K+ Sbjct: 47 YRLRYKSEGGKT-AYVTIGRSCDISLAGARK---RARHLKAQIELGADPQAEAKAKKQVL 102 Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH- 128 T +++ H + + E + +I G+ KIT ++ S Sbjct: 103 TWNAFFTDHYL-PHVKQHKRSWKNDLEMHNLRISAFIGNKRLNKITRSEVQRFHASLVEE 161 Query: 129 --TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 +P++A L +R AV E + NP V+ + + R + E+MQ+ Sbjct: 162 DLSPATADHHLKLIRQALNLAVDWELLEANPVAKVKLFNQDNQVERYLSDEEMQRLLKVL 221 Query: 187 SEGSQPRLA--FEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQKTGTIITVELPDG 240 S + FLL +G R S++ A + + K+ +V L D Sbjct: 222 KTDSNRVVCNVILFLLSTGARVSEALSAEWSDIDRKNRVWVIQATNSKSKKKRSVPLNDV 281 Query: 241 FMKLLAMTPIGKET--FFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISA 298 + +L + F+ +WF+ ++ + H +R A++ Sbjct: 282 AIGVLDALDTEGKHDRLFVGKRGPLTTIN--KVWFRIRSEAGLEDYRIHDLRHSYASLLV 339 Query: 299 DAGATAHELMATYGWKTVDQAETYTK--GADRIRLGIKNSRRISSVVDS 345 +AG + E+ G Y R S +I+ +++ Sbjct: 340 NAGHSLFEVQQALGHSDPKVTMRYAHLSKESLQRAANSASDKITEAMEA 388 >gi|312135537|ref|YP_004002875.1| tyrosine recombinase xerd [Caldicellulosiruptor owensensis OL] gi|311775588|gb|ADQ05075.1| tyrosine recombinase XerD [Caldicellulosiruptor owensensis OL] Length = 291 Score = 126 bits (316), Expect = 6e-27, Method: Composition-based stats. Identities = 39/280 (13%), Positives = 100/280 (35%), Gaps = 25/280 (8%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK-----HIRSGVES 125 ++ ++ + + N+ S+ + I + + T ++ Sbjct: 4 VEAFCDHLQRQNRF---SQNTISSYLRDAKKYIEFLDNMKIKLENTSQATLIAYIISMQK 60 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + S+ + + S++V + + Q+ + I + +E PK + + T++++++ S Sbjct: 61 SGKSNSTIARAIVSLKVFYDFLKTQKIIDIG-KIEIEPPKLEKNPPQILTRDEVEKLLSC 119 Query: 186 WSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241 E G + + E L +G++ S+ + + I + + + Sbjct: 120 PKEDDIKGIRDKAMLELLYATGIKVSELINLNLDDINLEHGYIICKNKKRDRVIPIGSYA 179 Query: 242 MKLLA----------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289 + + +E F+N + ++M F K A A ++K + H + Sbjct: 180 ISAVEKYLRYSRPYLAKSKDEEALFLNFNGERMTRQGFWKIVKFYAQSAEIDKEITPHVL 239 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 R AT + GA + G + + Y + A+ Sbjct: 240 RHSFATHLIENGADVRAVQQMLGHADISTTQRYLQVANVK 279 >gi|89054975|ref|YP_510426.1| phage integrase [Jannaschia sp. CCS1] gi|88864524|gb|ABD55401.1| phage integrase [Jannaschia sp. CCS1] Length = 304 Score = 126 bits (316), Expect = 6e-27, Method: Composition-based stats. Identities = 40/258 (15%), Positives = 87/258 (33%), Gaps = 21/258 (8%) Query: 93 ISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEY 152 + + + G + + +G+E++ ++ + L+S++ L+++A + + Sbjct: 34 RDLKDAMMSVRKSGGFAGADRAALEAYIAGLEAQGLAAATRARRLSSLKQLYRFAHEEGW 93 Query: 153 VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-------WSEGSQPRLAFEFLLYSGLR 205 NP L + P R + + E++ ++ + + L +GLR Sbjct: 94 REDNPTLQITGPARTRKLPGTLSLEEVDALLEASATYGRNDADRLRNHCLMQILYATGLR 153 Query: 206 CSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFMKLLAMT----------PIGKET 254 ++ + L+ + + K G V L +A P Sbjct: 154 VTELVSLPITALRGDPNMLLVLGKGGKERMVPLSPPARTAMAAWLDHLDATQEEPRSLFA 213 Query: 255 FFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHELMATY 311 F + + +F K + AG++ + H +R AT GA + Sbjct: 214 FPSHGKSGHLTRVRFFTLIKELSASAGIDPARVTPHTLRHAFATHLLQNGADLRAIQTLL 273 Query: 312 GWKTVDQAETYTKGADRI 329 G + E YT D Sbjct: 274 GHADIATTEIYTHILDER 291 >gi|73748904|ref|YP_308143.1| tyrosine recombinase XerD [Dehalococcoides sp. CBDB1] gi|147669665|ref|YP_001214483.1| tyrosine recombinase XerD subunit [Dehalococcoides sp. BAV1] gi|73660620|emb|CAI83227.1| tyrosine recombinase XerD [Dehalococcoides sp. CBDB1] gi|146270613|gb|ABQ17605.1| tyrosine recombinase XerD subunit [Dehalococcoides sp. BAV1] Length = 302 Score = 126 bits (316), Expect = 6e-27, Method: Composition-based stats. Identities = 41/283 (14%), Positives = 97/283 (34%), Gaps = 35/283 (12%) Query: 85 GSLAVNSRISFESYFDQI-------IRKSGDFD-YRKITTKHIRSGVESRKHT---PSSA 133 + N+ ++E+ Q+ KSG + T + + + + K ++ Sbjct: 16 KGFSENTSEAYENDLRQMTTFADKEAAKSGKIPGWDNFTRQTMLAYMLDLKERNYAITTV 75 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-----SE 188 ++ + + + F + V + + NP ++ PK + ++ + SE Sbjct: 76 VRKMAAAKSFFNFMVAEGKLKENPTENISTPKVGKPLPDAISISQVRALLNQPIKSGSSE 135 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLA- 246 + + E L SG+R ++ + + ++ K + + + + Sbjct: 136 AKRDKAMLELLYASGMRVTELVNLNMLDVDLKEGFVRCFGKGRKERMIPIYPQAAQSVQE 195 Query: 247 ---------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSAT 295 + ++ F+N ++ KA A +AG++ + H +R AT Sbjct: 196 YLNEIRPNLVRAEAEKALFLNRRGDRLTRQGLWQILKAYAREAGLDDVVTPHTLRHSFAT 255 Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRR 338 GA + G + + YT L ++ RR Sbjct: 256 HMLSGGADLRSVQELLGHANISTTQIYTH------LTSEHIRR 292 >gi|237748814|ref|ZP_04579294.1| site specific integrase/recombinase [Oxalobacter formigenes OXCC13] gi|229380176|gb|EEO30267.1| site specific integrase/recombinase [Oxalobacter formigenes OXCC13] Length = 317 Score = 126 bits (316), Expect = 6e-27, Method: Composition-based stats. Identities = 47/289 (16%), Positives = 105/289 (36%), Gaps = 41/289 (14%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG---VESRKHTPSSAIQFLTSMR 141 L+ + I++ +++I + +++ IR + ++ P S + L++ R Sbjct: 13 RQLSDQTVINYRRDLEELIELANQTKLATLSSSDIRRFTSKLHAKGLNPRSISRKLSAWR 72 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ---------- 191 ++W + + + NP + PK+ + + +D + + SE Sbjct: 73 GFYRWLIEENLTSANPVEDIHAPKKNKPLPKALSVDDAVRVVASTSEKEAVEQDRATLLC 132 Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQN------NIFSIK------TQKTGTIITVELPD 239 FE L SGLR S+ + +++ + +++ T K V + D Sbjct: 133 NHAMFELLYSSGLRVSELTSLDIHAIKDTGYRSASWINLEEKEVTVTGKGNKTRIVPIGD 192 Query: 240 GFMKLLAMTPIGKET-------------FFINNDKQKMNATQFSIWFKAKATKAGVNKS- 285 + + + +ET FIN+ ++++ + K+ A G+ S Sbjct: 193 AAVHAIRNWLLTRETLIDPSLQQEHTNALFINSRGRRISPRTVQLRLKSHANALGLPVSV 252 Query: 286 -AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 H +R A+ + + G ++ + YT D RL Sbjct: 253 HPHVLRHSFASHILQSSGDLRAVQEMLGHSSIASTQIYT-ALDFQRLAQ 300 >gi|239948007|ref|ZP_04699760.1| integrase [Rickettsia endosymbiont of Ixodes scapularis] gi|239922283|gb|EER22307.1| integrase [Rickettsia endosymbiont of Ixodes scapularis] Length = 397 Score = 126 bits (316), Expect = 6e-27, Method: Composition-based stats. Identities = 54/276 (19%), Positives = 102/276 (36%), Gaps = 15/276 (5%) Query: 59 EYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESY--FDQIIRKSGDFDYRKITT 116 E + P + T K L +Y + N + + D+ + I Sbjct: 99 ELTDLPISEELTFKELFDKYINNYA----KHNIKRWQDRIATMDRQAKHFYSLKISDIQR 154 Query: 117 KHIRSGVESRKH-TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175 I+ + +A +FL ++ +F A+ E + NP +++ K ++ R T Sbjct: 155 ADIQQTFNDLTNVGKYTANRFLETLSSIFNKAIEWELLEKNPVTGIKKHKEQSR-DRYIT 213 Query: 176 KEDMQQFKSFWSEGSQPRLA--FEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGT 231 KE+ +F E + + LY+G R S+ +++ + + I K G Sbjct: 214 KEEAPRFFQTLEEETNQLMKDFILISLYTGARKSNVLSMRWENISFIDKTWYISDTKNGE 273 Query: 232 IITVELPDGFMKLL--AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHG 288 TV L D +K+L + E F + + + +K KAG+ N H Sbjct: 274 PHTVVLIDEAIKILQDRKAQVINEWVFPSETSSSGHLQEPKKAWKRICQKAGLKNLRLHD 333 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 +R+ A+ A GA+ + + K Y + Sbjct: 334 LRRTCASWMAINGASQYVIGKALNHKHPRSTAIYAR 369 >gi|28199031|ref|NP_779345.1| phage-related integrase [Xylella fastidiosa Temecula1] gi|182681754|ref|YP_001829914.1| integrase family protein [Xylella fastidiosa M23] gi|28057129|gb|AAO28994.1| phage-related integrase [Xylella fastidiosa Temecula1] gi|182631864|gb|ACB92640.1| integrase family protein [Xylella fastidiosa M23] gi|307580183|gb|ADN64152.1| integrase family protein [Xylella fastidiosa subsp. fastidiosa GB514] Length = 339 Score = 126 bits (316), Expect = 6e-27, Method: Composition-based stats. Identities = 63/333 (18%), Positives = 116/333 (34%), Gaps = 28/333 (8%) Query: 7 LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66 +P F + + + G + YY+ G R P Y A+ + E+ Sbjct: 11 IPRFRVRPQ-KSGVVYYYYDHGGKPRKETPLG------RDYGLAI-KRWAELEHAQITPA 62 Query: 67 KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVE 124 T + + YR + A N++ Y + +++ D + I +IR ++ Sbjct: 63 IAVTFRHVAERYRAEVI-PTKAYNTQRMHHVYLNYLLQFFDDPPAPFESIKPVNIRQYLD 121 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVA-INPCLSVERPKRKTEGIRPWTKEDMQQFK 183 R SA + + L+ WA + NPC + R K + + D ++ Sbjct: 122 WRPFKV-SANREVALFSHLWNWARSKGITDLPNPCGGIRRNKERGRDVYI----DDTTYR 176 Query: 184 SFWSEGSQP-RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242 + + Q R A + +G R SD +H+ N I KTG + + + Sbjct: 177 AVYQAADQTLRDAMDLAYLTGQRVSDVVSMDERHIVNGALEICQAKTGVKLAIAITGELA 236 Query: 243 KLLAMTPIGKE-------TFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKF 292 L+ K ++ +N + + F+ AG+ K +R Sbjct: 237 VLIKRIFDRKRGMKLRSTRLIVDEKGLGLNWKKLAYRFRKVRAAAGIAKEVFQFRDLRAK 296 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKG 325 +AT AD + A G +V E Y + Sbjct: 297 AATDKADLAGDIRQAQAQLGHTSVVMTEHYVRK 329 >gi|238892411|ref|YP_002917145.1| site-specific tyrosine recombinase XerC [Klebsiella pneumoniae NTUH-K2044] gi|262040877|ref|ZP_06014103.1| tyrosine recombinase XerC [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|329997490|ref|ZP_08302792.1| tyrosine recombinase XerC [Klebsiella sp. MS 92-3] gi|238544727|dbj|BAH61078.1| tyrosine recombinase [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|259041766|gb|EEW42811.1| tyrosine recombinase XerC [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|328539058|gb|EGF65097.1| tyrosine recombinase XerC [Klebsiella sp. MS 92-3] Length = 300 Score = 126 bits (316), Expect = 6e-27, Method: Composition-based stats. Identities = 41/259 (15%), Positives = 89/259 (34%), Gaps = 19/259 (7%) Query: 85 GSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIR--SGVESRKH-TPSSAIQFLT 138 L+ + ++++ D +I ++G + + +R + R P+S L+ Sbjct: 21 RQLSPITLLNYQRQLDALIALADEAGLKSWSQCDAAQVRSFAVRSRRAGLGPASLALRLS 80 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQPRLA 195 ++R F W V Q ++ NP + PK + +D+ + + R Sbjct: 81 ALRSFFDWLVGQGELSANPAKGIAAPKIPRHLPKNIDVDDVNRLLDIDLNDPLAVRDRAM 140 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMKLLAMT------ 248 E + +GLR S+ ++HL K + + + + Sbjct: 141 LEVMYGAGLRLSELVNLDIKHLDLESGEVWVMGKGSKERRLPIGRNAVAWIEHWLDLRGL 200 Query: 249 -PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAH 305 + F++ ++++A F K G+N H +R AT ++ Sbjct: 201 FGTDDDALFLSKLGKRISARNVQKRFAEWGIKQGLNSHVHPHKLRHSFATHMLESSGDLR 260 Query: 306 ELMATYGWKTVDQAETYTK 324 + G + + YT Sbjct: 261 GVQELLGHANLSTTQIYTH 279 >gi|87198641|ref|YP_495898.1| phage integrase [Novosphingobium aromaticivorans DSM 12444] gi|87134322|gb|ABD25064.1| phage integrase [Novosphingobium aromaticivorans DSM 12444] Length = 383 Score = 125 bits (315), Expect = 7e-27, Method: Composition-based stats. Identities = 61/359 (16%), Positives = 112/359 (31%), Gaps = 43/359 (11%) Query: 21 IIYY-FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYR 79 I +Y + G RIR+ + + T+K L + ++ Sbjct: 18 IRWYIYAWRGGPRIRVAEQATQP-----RLTKADIAAIAAAQQASDEPADTVKGLSTRWQ 72 Query: 80 KSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKI----TTKHIRSGVESRKH--TPSSA 133 +S W + A ++R + +I K G R TT I + +A Sbjct: 73 RSREWKAFAESTRSLWGDCCTKIEEKWGKVPLRVFGDPRTTSKIVKWRDEMADANGLRTA 132 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERP-KRKTEGIRPWTKEDMQQFKSFWSEGSQP 192 + + + ++ K+ + Q +A NP V R K W ED F + + Sbjct: 133 DEHVKVLSMMAKYGLLQGLMACNPAQPVPRLWKGGNREEIIWLPEDCAAFDAVAPQWLVD 192 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT----IITVELPDGFMKLL--- 245 A + ++G+R +D C + + +K + + G +LL Sbjct: 193 --ARKLAEFTGMRRADLCALRRDEVFDTHIGRTAKKKSAGKRQRTVMPIIPGLRELLEEL 250 Query: 246 --AMTPIGKETFFINNDKQKMNATQFSIWFKAKA----------------TKAGVNKSAH 287 G ET + + S F +A K H Sbjct: 251 RARTRKPGIETVLVGAHGNPVQPATLSAQFNKYRSLANDGQGIVHRAAYDDEADKAKHLH 310 Query: 288 GVRKFSATISAD---AGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343 +R AT G T ++ + GW + A + D + + +RI+ Sbjct: 311 DLRGTFATKLMTLPGGGLTDDQIASVMGWSSDQVATIRKRYVDEAAIVVAIGKRIAEAA 369 >gi|288937766|ref|YP_003441825.1| tyrosine recombinase XerC [Klebsiella variicola At-22] gi|288892475|gb|ADC60793.1| tyrosine recombinase XerC [Klebsiella variicola At-22] Length = 300 Score = 125 bits (315), Expect = 7e-27, Method: Composition-based stats. Identities = 44/259 (16%), Positives = 93/259 (35%), Gaps = 19/259 (7%) Query: 85 GSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIR--SGVESRKH-TPSSAIQFLT 138 L+ + +++ D +I ++G +++ +R + R P+S L+ Sbjct: 21 RQLSPITLTNYQRQLDALIALADEAGLKSWQQCDAAQVRSFAVRSRRAGLGPASLALRLS 80 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQPRLA 195 ++R F W V Q +A NP + PK + +D+ + + R Sbjct: 81 ALRSFFDWMVSQGELAANPAKGIAAPKIPRHLPKNIDVDDVNRLLDIDLNDPLAVRDRAM 140 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT--------VELPDGFMKLLAM 247 E + +GLR S+ ++HL + G+ V + ++ L + Sbjct: 141 LEVMYGAGLRLSELVNLDIKHLDLESGEVWVMGKGSKERRLPIGRNAVTWIEHWLDLRGL 200 Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAH 305 + F++ ++++A F K G+N H +R AT ++ Sbjct: 201 FGTDDDALFLSKLGKRISARNVQKRFAEWGIKQGLNSHVHPHKLRHSFATHMLESSGDLR 260 Query: 306 ELMATYGWKTVDQAETYTK 324 + G + + YT Sbjct: 261 GVQELLGHANLSTTQIYTH 279 >gi|229047517|ref|ZP_04193107.1| Tyrosine recombinase xerC [Bacillus cereus AH676] gi|228723764|gb|EEL75119.1| Tyrosine recombinase xerC [Bacillus cereus AH676] Length = 299 Score = 125 bits (315), Expect = 7e-27, Method: Composition-based stats. Identities = 43/272 (15%), Positives = 97/272 (35%), Gaps = 26/272 (9%) Query: 85 GSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIRSGV---ESRKHTPSSAIQFLT 138 + + + S+++ + + + G + +T +R + K S + ++ Sbjct: 18 RNYSKYTIASYQNDLEHFVQFMEREGISSFLDVTYADVRLYLTTLHDEKLARKSVARKVS 77 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRL 194 S+R L+++ +R+ Y NP PK++ + E++++ G + + Sbjct: 78 SLRSLYRFLMREGYRKDNPFALASLPKKELSIPKFLYAEELEELFEVSDMETPLGQRNQA 137 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE------------LPDGF 241 E + +G+R S+ + + + +I K + + +G Sbjct: 138 LLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQRYIPFGSYAQDSLITYIENGR 197 Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299 +L+ T F+N + + KA + S H +R AT D Sbjct: 198 KQLVNKTDEDSHMVFLNAKGTPLTSRGVRYVLNELIKKASLTMRISPHMLRHTFATHMLD 257 Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRL 331 GA + G + + + YT + RL Sbjct: 258 EGADLRTVQELLGHENLSTTQIYTH-VSKERL 288 >gi|239618321|ref|YP_002941643.1| integrase family protein [Kosmotoga olearia TBF 19.5.1] gi|239507152|gb|ACR80639.1| integrase family protein [Kosmotoga olearia TBF 19.5.1] Length = 305 Score = 125 bits (315), Expect = 7e-27, Method: Composition-based stats. Identities = 45/288 (15%), Positives = 101/288 (35%), Gaps = 28/288 (9%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESR- 126 + + + + + +L+ N+ S+ + + DYR++ + I ++ Sbjct: 3 FEDAVERFAEYLEFVRNLSKNTVESYTRDLKHFGQYLEEYSLDYRQVKRRDIEKFMKELS 62 Query: 127 -------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179 + +PSS + L++++ + + V P V+ PK + + E++ Sbjct: 63 QGNFSDSRLSPSSVARHLSTLKTFYMFLYVSGTVNKIPTDLVKAPKTRRRIPEYISYEEV 122 Query: 180 QQFKSFWSE---GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ---NNIFSIKTQKTGTII 233 Q+ + E G + R + Y GLR S+ C ++ + + + +K+ K Sbjct: 123 QKILEAFPETHLGKRNRAIVALMYYCGLRVSEVCSLTLRDISLESDPLVRVKSGKGDKDR 182 Query: 234 TVELPDGFMKLL-------AMTPIGKETF--FINNDKQKMNATQFSIWFKAKATKAGVNK 284 V L ++++ P F+ + + + + K +K Sbjct: 183 IVPLTPDAVRIISDYLKHRDRFPDANRHIKLFVGIRGEPITRKSVNKMLQNHVKKIFPDK 242 Query: 285 S--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 H R AT GA+ + G + Y DR + Sbjct: 243 HLHPHIFRHSCATHLLQRGASIKIVQEILGHANISTTSIYLHITDREK 290 >gi|311742411|ref|ZP_07716220.1| tyrosine recombinase XerD [Aeromicrobium marinum DSM 15272] gi|311314039|gb|EFQ83947.1| tyrosine recombinase XerD [Aeromicrobium marinum DSM 15272] Length = 310 Score = 125 bits (315), Expect = 7e-27, Method: Composition-based stats. Identities = 48/284 (16%), Positives = 98/284 (34%), Gaps = 30/284 (10%) Query: 70 TLKWLISEYRKSAH-WGSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIRSGVES 125 T+ +++Y LA N+ +S+ + + + G +IT + V Sbjct: 7 TVGQAVADYLSHLGVERGLADNTLLSYRRDLRRYLGYLAEIGREQPDEITEADLLGFVAL 66 Query: 126 RK--------HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177 + +S + + ++R L ++ +R++ VA + +V+ P+ + E Sbjct: 67 LRTGDDLTGPLGAASVARHVVTVRGLHRFWLREQLVATDVAGAVKPPRPAQRLPKALALE 126 Query: 178 DMQQFKSFWSEG-----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGT 231 ++ + R E L +G R S++ V L + + K G Sbjct: 127 QVEAILDAAGAPGTRLAQRDRALLELLYGTGARISEAVGIDVDDLDLDESTLLLRGKGGK 186 Query: 232 IITVELPDGFMKLL----------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281 V + + + F+N+ +++ A +AG Sbjct: 187 HRIVPVGSFAATAIGDYLVGARVALSSTAASPALFLNSRGGRLSRQSAWTVLTRAARRAG 246 Query: 282 V--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 V + S H +R AT D GA + G +V + YT Sbjct: 247 VETDVSPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQIYT 290 >gi|72161605|ref|YP_289262.1| site-specific tyrosine recombinase XerD [Thermobifida fusca YX] gi|71915337|gb|AAZ55239.1| tyrosine recombinase XerD [Thermobifida fusca YX] Length = 321 Score = 125 bits (315), Expect = 7e-27, Method: Composition-based stats. Identities = 55/285 (19%), Positives = 98/285 (34%), Gaps = 39/285 (13%) Query: 85 GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGV--------ESRKHTPSSA 133 LA N+ S+ ++ + G D R + + S + R +SA Sbjct: 23 RGLAANTLQSYRRDLNRYLDFLTARGITDLRDVRADDVASFLRTLREGDAHHRPLGANSA 82 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG---- 189 + + ++R L ++A+R+ A +P V P + + T ++ + G Sbjct: 83 GRAVIAVRGLHRFALREGLTAHDPAHEVRPPALQRRLPKAITVAQVEALLAAADIGGGPR 142 Query: 190 -SQPRLAFEFLLYSGLRCSDSCRAGVQHL---------QNNIFSIK-TQKTGTIITVELP 238 + R E L +G R S+ V + + +++ K G V + Sbjct: 143 ALRDRALIELLYGTGARISEVVGLDVDDVTRLRPDPHADTEVAAVRFRGKGGKERIVPVG 202 Query: 239 DGFMKL-----------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSA 286 LA G F+N ++ A A +AG+ + S Sbjct: 203 RYARTAVDAYLVRARPGLAAAGRGSSALFLNARGGRLTRQGAWAVLHAAAERAGLRDVSP 262 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYT-KGADRIR 330 H +R AT D GA + G +V + YT DR+R Sbjct: 263 HTLRHSFATHLIDGGADVRVVQELLGHASVTTTQVYTLVTVDRLR 307 >gi|269120433|ref|YP_003308610.1| integrase family protein [Sebaldella termitidis ATCC 33386] gi|268614311|gb|ACZ08679.1| integrase family protein [Sebaldella termitidis ATCC 33386] Length = 307 Score = 125 bits (315), Expect = 7e-27, Method: Composition-based stats. Identities = 55/278 (19%), Positives = 96/278 (34%), Gaps = 27/278 (9%) Query: 74 LISEYRKSAHWGSL----AVNSRISFES----YFDQIIRKSGDFDYRKITT---KHIRSG 122 LI K H+ + + N+ + + D I FDY K+ + + Sbjct: 10 LIEPLEKFLHFQEVILGKSYNTIRGYRKDITQFIDYISGNEEIFDYNKVEVFTVRSFIAY 69 Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 + + S + ++++R F + Q V N + V PK + E TK+D+ + Sbjct: 70 SNNNEVGKRSINRKISALRTFFAYLKEQNIVEANKLIYVNMPKFEKELPTVLTKDDINKL 129 Query: 183 KSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-EL 237 ++ G + RL EFL SGLR S+ + ++ G V Sbjct: 130 RNVIDISKVTGIRDRLIIEFLYSSGLRSSELVSLSELMINLEEREVRVLGKGNKERVTFF 189 Query: 238 PDGFMKLLAMTPIGKET---------FFINNDKQKMNATQFSIWFKAKATKAGVNK--SA 286 + K K F+N+ +++ A KAG+NK + Sbjct: 190 SENARKWYEKYISAKRNEYKNYTPNIVFVNSRGERITTRSLRRLIADYAEKAGINKEVTP 249 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H R AT + L G ++ + YT Sbjct: 250 HVFRHSFATTLLNNKVDIRYLQELLGHSSISTTQVYTH 287 >gi|114331554|ref|YP_747776.1| tyrosine recombinase XerC [Nitrosomonas eutropha C91] gi|114308568|gb|ABI59811.1| tyrosine recombinase XerC subunit [Nitrosomonas eutropha C91] Length = 321 Score = 125 bits (315), Expect = 7e-27, Method: Composition-based stats. Identities = 42/285 (14%), Positives = 101/285 (35%), Gaps = 31/285 (10%) Query: 71 LKWLISEYRKS-AHWGSLAVNSRISFESYFDQIIR-----------KSGDFDYRKI---T 115 L L+ EY + SL+V ++ + ++R K D ++ Sbjct: 13 LPSLLGEYLTYLSSTRSLSVQTQHHYRRDLIALVRCTIAQHENGNNKISDISLTRLHSHD 72 Query: 116 TKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175 +H + + S + S + L++ R +++ +R + NPCL V PK + + Sbjct: 73 IRHFIARLHSSGLSGRSLARMLSAWRGFYRYLIRHHHHNGNPCLDVRVPKSPHKLPHALS 132 Query: 176 KEDMQQFKSFWS-----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230 ++ Q +F ++ FE SGLR ++ + + +++ G Sbjct: 133 PDEAAQLLTFNPSSNDMLATRDLAIFELFYSSGLRLTELTQLQPTDIDFTGGTVRVTGKG 192 Query: 231 TIITV-ELPDGFMKLLAM--------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281 + + + ++ L G+ F++ ++++ + +A Sbjct: 193 NKTRIVPVGELALRALQAWLPLRSAWLIPGETALFLSQRGRRIHPRTIAYRLHQRAQLQN 252 Query: 282 VNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 ++ H +R A+ + + G ++ + YT Sbjct: 253 LDSRVHPHTLRHSFASHLLQSSGDLRAVQEMLGHSSIRSTQVYTH 297 >gi|170729640|ref|YP_001775073.1| phage-related integrase [Xylella fastidiosa M12] gi|167964433|gb|ACA11443.1| phage-related integrase [Xylella fastidiosa M12] Length = 339 Score = 125 bits (315), Expect = 7e-27, Method: Composition-based stats. Identities = 62/333 (18%), Positives = 116/333 (34%), Gaps = 28/333 (8%) Query: 7 LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66 +P F + + + G + YY+ G R P Y A+ + E+ Sbjct: 11 IPRFRVRPQ-KSGVVYYYYDHGGKPRKETPLG------RDYGLAI-KRWAELEHAQITPA 62 Query: 67 KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVE 124 T + + YR + A +++ Y + +++ D + I +IR ++ Sbjct: 63 IAVTFRHVAERYRAEVI-PTKARSTQQMHHIYLNYLLKFFDDPPAPFESIKPVNIRQYLD 121 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVA-INPCLSVERPKRKTEGIRPWTKEDMQQFK 183 R SA + + L+ WA + NPC + R K + + D ++ Sbjct: 122 WRTSKV-SANREVALFSHLWNWARSKGITDLPNPCGGIRRNKERGRDVYI----DDTTYR 176 Query: 184 SFWSEGSQP-RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242 + + Q R A + +G R SD +H+ N I KTG + + + Sbjct: 177 AVYQAADQTLRDAMDLAYLTGQRVSDVVNMDERHIVNGALEICQAKTGVKLAIAITGELA 236 Query: 243 KLLAMTPIGKE-------TFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKF 292 L+ K ++ +N + + F+ AG+ K +R Sbjct: 237 VLIKRILARKRGMKLRSTRLIVDEKGLGLNWKKLAYRFRKVRAAAGIAKEVFQFRDLRAK 296 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKG 325 +AT AD + A G +V E Y + Sbjct: 297 AATDKADLAGDMRQAQAQLGHASVTMTEHYVRK 329 >gi|189485661|ref|YP_001956602.1| tyrosine recombinase XerD [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|170287620|dbj|BAG14141.1| tyrosine recombinase XerD [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 294 Score = 125 bits (315), Expect = 7e-27, Method: Composition-based stats. Identities = 42/272 (15%), Positives = 96/272 (35%), Gaps = 20/272 (7%) Query: 85 GSLAVNSRISFESYFDQII-----RKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139 L+ N+ +++++ + I ++ ++ +++ P S + + S Sbjct: 19 KGLSENTVLAYKADVLKFINFAKKKRISLENFEHNDITDFLWEMKTEGLKPRSIFRVIES 78 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195 +R +K+ ++ NP L + P T +++ + + + Sbjct: 79 LRQFYKFLNSEDLAKNNPTLYLATPNLPENLPDILTFDEVDLLLNSINDDDEMHIRNKAM 138 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDG-------FMKLLAM 247 E L +GLR S+ + + F K V + ++K Sbjct: 139 LELLYAAGLRVSELINLKFSDINLEDCFLRIIGKGSKERLVPFGNKAKFFISIYLKKRRP 198 Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAH 305 + FI+ +K++ +F K A G+NK + H +R A+ GA Sbjct: 199 CLNVNDHIFISRLGKKLSRIEFWRQLKNIAKNVGINKNITPHTLRHSFASHLLKGGADIR 258 Query: 306 ELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 + G ++ + YT D R+ ++ + Sbjct: 259 FVQEMLGHASITTTQIYTH-LDEDRIVQQHKK 289 >gi|322515579|ref|ZP_08068560.1| tyrosine recombinase XerC [Actinobacillus ureae ATCC 25976] gi|322118382|gb|EFX90648.1| tyrosine recombinase XerC [Actinobacillus ureae ATCC 25976] Length = 331 Score = 125 bits (315), Expect = 8e-27, Method: Composition-based stats. Identities = 42/268 (15%), Positives = 96/268 (35%), Gaps = 20/268 (7%) Query: 85 GSLAVNSRISFESYFDQIIR---KSGDFDYRKITTKHIRSGV---ESRKHTPSSAIQFLT 138 + ++ +++ + ++G ++++ +R + + + S L Sbjct: 49 KQASPHTLSNYQRQLLAVSEMFSQAGIGAWQEVNVAAVRWMLTQSHKQGLSAKSIGLRLV 108 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF---KSFWSEGSQPRLA 195 ++R F + V+QE + +NP L ++ PK + E + Q ++ + Sbjct: 109 ALRQWFNYLVQQEQMTVNPALGIKSPKVGKHLPKNIDAEQIGQLLNTETSEPLELRDLAM 168 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-ELPDGFMKLLAMTPIGKET 254 E + SGLR S+ + + N +K G + + ++ L G+ Sbjct: 169 MELMYSSGLRLSELQGLDLGDMDLNAREVKVLGKGNKERILPIGTKALQALQAWLGGRHD 228 Query: 255 F-------FINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAH 305 F F+N +++ + + K G+ + H +R AT +A Sbjct: 229 FNPQDNALFLNKRGGRLSHRSIQLAMQKWGKKQGLETHLHPHKLRHSFATHMLEASGDLR 288 Query: 306 ELMATYGWKTVDQAETYTKGADRIRLGI 333 + G ++ + YT D L Sbjct: 289 AVQELLGHSSLSTTQIYT-SLDFQHLAQ 315 >gi|83942296|ref|ZP_00954757.1| tyrosine recombinase XerD [Sulfitobacter sp. EE-36] gi|83846389|gb|EAP84265.1| tyrosine recombinase XerD [Sulfitobacter sp. EE-36] Length = 324 Score = 125 bits (315), Expect = 8e-27, Method: Composition-based stats. Identities = 47/286 (16%), Positives = 103/286 (36%), Gaps = 32/286 (11%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGV---ES 125 L W+ + A A N+++++ D+ + K I + + ++ Sbjct: 6 LHWISTFLEAQAAELGAATNTQLAYGRDLKDFDSFLARRTLDFVTVGRKDIEAYLVWCDA 65 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + S+ + L++++ L+++A + + + NP + + P + + +++++ Q Sbjct: 66 QGLAKSTRARRLSAIKQLYRFAFEEGWRSDNPAIQIAGPGQDKRLPKVLSEDEVDQLLDA 125 Query: 186 W-------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVEL 237 S+ + E L +G+R S+ V + + + K G V L Sbjct: 126 ARHSGRNTSDQLRNTCLMELLYATGMRVSELVSLRVSAARGDPRLLLIMGKGGKERLVPL 185 Query: 238 PDGFMKLLAMTPIGKET--------------FFINNDKQK--MNATQFSIWFKAKATKAG 281 D + LA + ++ + + + +F + K A AG Sbjct: 186 SDPSREALAAWLVQRDRTDEAAQAKGKPASIYLFPSRGSAGYLTRHRFYLLIKEFALTAG 245 Query: 282 VN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 V+ + H +R AT GA + G V E YT Sbjct: 246 VDPSKVTPHTLRHAFATHLLANGADLRAIQTMLGHADVATTEIYTH 291 >gi|218235700|ref|YP_002368632.1| site-specific tyrosine recombinase XerC [Bacillus cereus B4264] gi|229111302|ref|ZP_04240855.1| Tyrosine recombinase xerC [Bacillus cereus Rock1-15] gi|229129107|ref|ZP_04258080.1| Tyrosine recombinase xerC [Bacillus cereus BDRD-Cer4] gi|229146402|ref|ZP_04274773.1| Tyrosine recombinase xerC [Bacillus cereus BDRD-ST24] gi|229152030|ref|ZP_04280225.1| Tyrosine recombinase xerC [Bacillus cereus m1550] gi|296504326|ref|YP_003666026.1| site-specific tyrosine recombinase [Bacillus thuringiensis BMB171] gi|218163657|gb|ACK63649.1| tyrosine recombinase XerC [Bacillus cereus B4264] gi|228631379|gb|EEK88013.1| Tyrosine recombinase xerC [Bacillus cereus m1550] gi|228637035|gb|EEK93494.1| Tyrosine recombinase xerC [Bacillus cereus BDRD-ST24] gi|228654344|gb|EEL10209.1| Tyrosine recombinase xerC [Bacillus cereus BDRD-Cer4] gi|228672078|gb|EEL27369.1| Tyrosine recombinase xerC [Bacillus cereus Rock1-15] gi|296325378|gb|ADH08306.1| site-specific tyrosine recombinase [Bacillus thuringiensis BMB171] Length = 299 Score = 125 bits (315), Expect = 8e-27, Method: Composition-based stats. Identities = 43/272 (15%), Positives = 97/272 (35%), Gaps = 26/272 (9%) Query: 85 GSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIRSGV---ESRKHTPSSAIQFLT 138 + + + S+++ + + + G + +T +R + K S + ++ Sbjct: 18 RNYSKYTIASYQNDLEHFVQFMEREGISSFLDVTYADVRLYLTTLHDEKLARKSVARKVS 77 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRL 194 S+R L+++ +R+ Y NP PK++ + E++++ G + + Sbjct: 78 SLRSLYRFLMREGYRKDNPFALASLPKKELSIPKFLYAEELEELFEVSDTETPLGQRNQA 137 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE------------LPDGF 241 E + +G+R S+ + + + +I K + + +G Sbjct: 138 LLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQRYIPFGSYAQDSLITYIENGR 197 Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299 +L+ T F+N + + KA + S H +R AT D Sbjct: 198 KQLVNKTDEDSHMVFLNAKGTPLTSRGVRYVLNELIKKASLTMRISPHMLRHTFATHMLD 257 Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRL 331 GA + G + + + YT + RL Sbjct: 258 EGADLRTVQELLGHENLSTTQIYTH-VSKERL 288 >gi|327537504|gb|EGF24226.1| site-specific DNA tyrosine recombinase, XerD [Rhodopirellula baltica WH47] Length = 317 Score = 125 bits (315), Expect = 8e-27, Method: Composition-based stats. Identities = 47/300 (15%), Positives = 100/300 (33%), Gaps = 23/300 (7%) Query: 48 MSALTGSTPKREYINSPRKKPTTLKWLISEYRKS-AHWGSLAVNSRISFESYFDQIIRKS 106 M+ + + + P+ + + E+ LA N+ ++ + + Sbjct: 1 MAKRLTKLQQLKSGQTESVAPSAGQAVCDEFLVYLKRECHLADNTVAAYGRDMKRFVTWM 60 Query: 107 GDFDYRKITT---KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER 163 +T + + P+S + + ++R FK+ + NP + Sbjct: 61 DGRRPADLTITELSDFVASLHGEGLAPASISRAIVAIRTFFKYLQLEGITVDNPAELLAT 120 Query: 164 PKRKTEGIRPWTKEDMQQFKSFWSEG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQN 219 K + +++ F S + + R E L +G R S+ C V+ L Sbjct: 121 QKAWQRMPGVLSPNEVEAFLSAVKKSDSFWQRDRALLEVLYATGCRASEVCTLRVRDLTL 180 Query: 220 NIFSIKTQKTGTI-------------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNA 266 + +++ G I + L + L P + F++ + ++ Sbjct: 181 DEKTLRCHGKGDKQRMVPIGGRAIRSIQLYLEESRHILADRNPGQIDELFLSRGGKALDR 240 Query: 267 TQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 Q K A +AG+ S H +R AT GA ++ G ++ + YT Sbjct: 241 IQLWRLVKRYAKRAGISDEISPHSLRHSFATHLLAGGADLRQVQEMLGHASIQTTQIYTH 300 >gi|322420470|ref|YP_004199693.1| integrase family protein [Geobacter sp. M18] gi|320126857|gb|ADW14417.1| integrase family protein [Geobacter sp. M18] Length = 304 Score = 125 bits (315), Expect = 8e-27, Method: Composition-based stats. Identities = 44/270 (16%), Positives = 87/270 (32%), Gaps = 28/270 (10%) Query: 86 SLAVNSRISFESYFDQIIRKSGDFDYRK---------ITTKHIRSGVESRKHTPSSAI-- 134 + + ++ + R +G+ + V K P SA Sbjct: 25 GRSPATIAAYRRDLALVARVAGELAPGVVCREVTVGFLDQVFSAEAVTESKRGPRSAASL 84 Query: 135 -QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS--- 190 + ++R F WA V NP S+ + + T + ++ + Sbjct: 85 HRMKAAVRAFFAWASEAGVVDDNPARSIRMHRLPRKLPVFLTTAEKKRLLKELKGRTDFS 144 Query: 191 --QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE---------LPD 239 + R E LL +G+R + + + + ++ + G + V+ L Sbjct: 145 TLRDRAMIEVLLGTGIRLGELAALNLDDIDLDAKHLRVRAKGNVPQVKFIKTDLRTLLRR 204 Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS 297 + + E F++N ++ Q + KAG+ K + HG+R AT Sbjct: 205 YLAERRRHSRPEMEALFLSNRDGRLCQRQIANRLAHWLRKAGIEKELTPHGLRHTFATHL 264 Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGAD 327 A + G + V + YT D Sbjct: 265 YCATNDLLVVQRALGHRDVSTTQIYTHLVD 294 >gi|68535950|ref|YP_250655.1| integrase/recombinase [Corynebacterium jeikeium K411] gi|68263549|emb|CAI37037.1| integrase/recombinase [Corynebacterium jeikeium K411] Length = 299 Score = 125 bits (315), Expect = 8e-27, Method: Composition-based stats. Identities = 49/276 (17%), Positives = 95/276 (34%), Gaps = 23/276 (8%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS----GVESR 126 + L++ Y + ++V++ +++ D+ + G +++T I + Sbjct: 7 RKLVTAYIRHLKTERDVSVHTLSNYQRDLDRYLVWLGSKALQEVTATDIEDHLVYLRKDL 66 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 SSA + L ++R L +A + + + V P + + + ++ + Sbjct: 67 NLAASSAARGLAAIRGLHSFAHADGRLPFDVAVDVPTPSQGGSIPKALSLAQVEALLNAV 126 Query: 187 SEGS-------QPRLAFEFLLYSGLRCSDSCRAGVQHL-QNNIFSIKTQKTGTIITVEL- 237 G + R E L +G R ++ V L + + K G V L Sbjct: 127 PAGDGASQINIRDRALLEMLYSTGARITELLDLDVDDLDREQRVLLVRGKGGKERIVPLG 186 Query: 238 PDGFMK----LLAMTPI----GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHG 288 L+ P G F+NN ++ A AG+ S H Sbjct: 187 RPALQAVERYLVRARPSLNKKGSPALFLNNRGARLGRQSGFKIVSQAAEAAGLEHVSPHS 246 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 +R AT + GA + G +V + YTK Sbjct: 247 LRHSFATHLLEGGADIRVVQELLGHASVATTQIYTK 282 >gi|296105305|ref|YP_003615451.1| site-specific tyrosine recombinase XerC [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295059764|gb|ADF64502.1| site-specific tyrosine recombinase XerC [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 300 Score = 125 bits (315), Expect = 8e-27, Method: Composition-based stats. Identities = 43/259 (16%), Positives = 93/259 (35%), Gaps = 19/259 (7%) Query: 85 GSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSGV---ESRKHTPSSAIQFLT 138 L+ + ++++ D I + G +++ +R V + +P+S L+ Sbjct: 21 RQLSPITLLNYQRQLDAIMQIADEIGLKSWQQCDAATVRGFVVRSRKKNLSPASLALRLS 80 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQPRLA 195 ++R F W V Q + NP + PK + +D+ + + R Sbjct: 81 ALRSFFDWLVSQGGLKANPAKGIATPKAPRHLPKNIDVDDVNRLLDIDLNDPLAVRDRAM 140 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT--------VELPDGFMKLLAM 247 E + +GLR S+ ++HL + G+ V + ++ L + Sbjct: 141 LEVMYGAGLRLSELVNLDLKHLDLESGEVWVMGKGSKERRLPIGRNAVSWIEHWLDLRGL 200 Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAH 305 ++ F++ ++++A F K G+N H +R AT ++ Sbjct: 201 FGAEEDALFLSKLGKRISARNVQKRFAEWGIKQGLNSHVHPHKLRHSFATHMLESSGDLR 260 Query: 306 ELMATYGWKTVDQAETYTK 324 + G + + YT Sbjct: 261 GVQELLGHANLSTTQIYTH 279 >gi|99081269|ref|YP_613423.1| phage integrase [Ruegeria sp. TM1040] gi|99037549|gb|ABF64161.1| phage integrase [Ruegeria sp. TM1040] Length = 317 Score = 125 bits (315), Expect = 8e-27, Method: Composition-based stats. Identities = 44/278 (15%), Positives = 99/278 (35%), Gaps = 33/278 (11%) Query: 88 AVNSRISFESYFDQII--RKSGDFDYRKITTKHIRSGV---ESRKHTPSSAIQFLTSMRV 142 A N+ +++ + ++ + ++ I + + ++ + ++ + L++++ Sbjct: 25 ARNTLLAYGRDLRNVTTWMRTKGQSFAQMQQADIEAYLISCDAEGLSRATRARRLSAIKQ 84 Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ---PRLA---- 195 ++++A + + NP L ++ P R + + ++ + + E + RL Sbjct: 85 IYRFAFEEGWRQDNPALQIKGPGRDKSLPKTLDEAEVDRLLAAAREVGRTEADRLRNTCL 144 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET 254 E L +G+R S+ V + + + K G V L L + +++ Sbjct: 145 MELLYATGMRVSELVSLPVSATRGDPNMLLILGKGGKERMVPLSPPARAALGAWIVLRDS 204 Query: 255 FFINNDKQ----------------KMNATQFSIWFKAKATKAGV---NKSAHGVRKFSAT 295 + Q + +F + K A GV + H +R AT Sbjct: 205 LEDKREGQGHKASRFLFPSRSKEGHLTRHRFYLLIKELAVAGGVSPEKVTPHTLRHAFAT 264 Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 GA + A G + E YT D RL Sbjct: 265 HLLQNGADLRAIQALLGHADIATTEIYTHVLD-ARLAE 301 >gi|320104524|ref|YP_004180115.1| integrase family protein [Isosphaera pallida ATCC 43644] gi|319751806|gb|ADV63566.1| integrase family protein [Isosphaera pallida ATCC 43644] Length = 442 Score = 125 bits (315), Expect = 8e-27, Method: Composition-based stats. Identities = 48/305 (15%), Positives = 103/305 (33%), Gaps = 31/305 (10%) Query: 57 KREYINSPRKKPTTLKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGD------- 108 + TL LI E+ S ++ ++ +++ R + Sbjct: 128 RTPPGARDSSPKPTLHPLIVEFVTSLERNREVSEHTLRAYQEDLGLFSRYLAESQPGCAS 187 Query: 109 -----FDYRKITTKHIRS---GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160 D R + +R + + + P + + L S+R ++ + ++ +P + Sbjct: 188 SDREPIDPRLADARRLRGYSSWLSRQGYAPGTIARRLASLRTFYRHLRKHGHLEGDPTAA 247 Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQH 216 + PK RP + +++ G + R E L GLR + ++ Sbjct: 248 MRNPKPARRLPRPLRLDQIERLLEAVPTDQSLGVRDRAILELLYGGGLRVGELVALDLED 307 Query: 217 LQNNIFSIKTQKTGTIITV-ELPDGFMKLLAMTPI-------GKETFFINNDKQKMNATQ 268 L ++ + G + + + + G+ F+N +++ A Sbjct: 308 LDLERNVVRVRGKGRRERLTPIGKQAAEWVRRWLTHRRPDHGGEHALFLNRYGRRLTARS 367 Query: 269 FSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 F+ A G++ + H +R AT D GA + G + + + YT Sbjct: 368 VDRLFETHARGLGLDADATPHSLRHSFATHLLDRGADLRSVQELLGHRRLTTTQIYT-QV 426 Query: 327 DRIRL 331 R RL Sbjct: 427 TRERL 431 >gi|308271353|emb|CBX27961.1| Tyrosine recombinase xerC [uncultured Desulfobacterium sp.] Length = 310 Score = 125 bits (315), Expect = 8e-27, Method: Composition-based stats. Identities = 56/295 (18%), Positives = 103/295 (34%), Gaps = 39/295 (13%) Query: 71 LKWLISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDF----------------DYRK 113 + +IS + ++ A +VN+ ++ + + + + + Sbjct: 6 IDSMISSFIETLASEKGYSVNTCRAYANDLYEFSSYAAEKSGQDSDEESEISTFMVEDAN 65 Query: 114 ITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173 G +K+ S I+ L+++R FK VR+ ++ NP + PK+ Sbjct: 66 YLLIRAYLGFLHKKNKKKSIIRKLSALRSFFKHLVRRNIISDNPLELISTPKQDKNIPAY 125 Query: 174 WTKEDMQQFKSFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QK 228 T ++M + G + R FE + SG+R S+ V + IK K Sbjct: 126 LTVDEMFRLLDSIKTDTVSGLRNRAIFETMYSSGIRVSELAGLNVSSVDFGAGLIKVFGK 185 Query: 229 TGTIITVELPDGFMKLLA----------MTPIGKETFFINNDKQKMNATQFS----IWFK 274 G V + M + + F+N +K ++ + + Sbjct: 186 GGKERIVPIGSKAMDTIKSYRQKIQGDNILSDKNSPLFLNKNKGRLTTRSIARVLEKFVS 245 Query: 275 AKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADR 328 V S H +R AT DAGA + G K++ + YT G DR Sbjct: 246 EFCIS--VPVSPHALRHSFATHMLDAGADLRVVQELLGHKSLSTTQRYTHVGIDR 298 >gi|170730468|ref|YP_001775901.1| phage-related integrase [Xylella fastidiosa M12] gi|167965261|gb|ACA12271.1| phage-related integrase [Xylella fastidiosa M12] Length = 339 Score = 125 bits (315), Expect = 8e-27, Method: Composition-based stats. Identities = 61/323 (18%), Positives = 111/323 (34%), Gaps = 27/323 (8%) Query: 17 RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76 + G + YY+ G R P Y A+ + E+ T + + Sbjct: 20 KSGVVYYYYDHGGKPRKETPLG------RDYGLAIQ-RWAELEHAQITPAIAVTFRHVAE 72 Query: 77 EYRKSAHWGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESRKHTPSSAI 134 YR + A N++ Y + +++ D + I +IR ++ R SA Sbjct: 73 RYRAEVI-PTKAYNTQRMHHIYLNYLLKFFDDPPAPFESIKPVNIRQYLDWRTSKV-SAN 130 Query: 135 QFLTSMRVLFKWAVRQEYVA-INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP- 192 + + L+ WA + NPC + R K + + D +++ + Q Sbjct: 131 REVALFSHLWNWARSKGITDLPNPCGGIRRNKERGRDVYI----DDTTYRAVYQAADQTL 186 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGK 252 R A + +G R SD +H+ N I KTG + + + L+ K Sbjct: 187 RDAMDLAYLTGQRVSDVVNMDERHIVNGALEICQAKTGVKLAIAITGELAVLIKRILARK 246 Query: 253 E-------TFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKFSATISADAGA 302 ++ +N + + F+ AG+ K +R +AT AD Sbjct: 247 RGMKLRSTRLIVDEKGLGLNWKKLAYRFRKVRAAAGIAKEIFQFRDLRAKAATDKADFAG 306 Query: 303 TAHELMATYGWKTVDQAETYTKG 325 + A G +V E Y + Sbjct: 307 DMRQAQAQLGHASVTMTEHYVRK 329 >gi|224537800|ref|ZP_03678339.1| hypothetical protein BACCELL_02683 [Bacteroides cellulosilyticus DSM 14838] gi|224520620|gb|EEF89725.1| hypothetical protein BACCELL_02683 [Bacteroides cellulosilyticus DSM 14838] Length = 294 Score = 125 bits (314), Expect = 9e-27, Method: Composition-based stats. Identities = 43/276 (15%), Positives = 98/276 (35%), Gaps = 24/276 (8%) Query: 73 WLISEYRKSAHW-GSLAVNSRISFESYFDQI----IRKSGDFDYRKITTKHIRSGV---E 124 WL + + + + + + S+ Q + GD + + +R + Sbjct: 2 WLTNSFLDYLQYERNYSEETIKSYREDLCQFEKFAREEIGDSALSGVKAELVREWIVSLM 61 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 + +T +S + L+S+R +K+ +R+ V +NP + PK K + +M + Sbjct: 62 DKGYTSTSINRKLSSLRSFYKFLLRKGEVCVNPLQKITGPKNKKPLPTFLRESEMDKLLD 121 Query: 185 FWS-----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELP 238 +G + + E +G+R S+ +++ + IK T K + Sbjct: 122 EVDFGEGFKGCRDHMIIEMFYATGMRLSELIGLDDKNVDFSSLLIKVTGKRNKQRLIPFG 181 Query: 239 DGFMKLL--------AMTPIGKETFFINNDKQKMNATQFSIWFKA--KATKAGVNKSAHG 288 + + + + FF+ ++++ + K +S H Sbjct: 182 EELKNAMIEYVNVRNEIVQARTDAFFVRESGERLSRSIVENLVKRNLSKVVTLKKRSPHV 241 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 +R AT + A + G +++ E YT Sbjct: 242 LRHTFATTMLNHDAELGAIKELLGHESLATTEVYTH 277 >gi|260578657|ref|ZP_05846565.1| integrase/recombinase XerD [Corynebacterium jeikeium ATCC 43734] gi|258603154|gb|EEW16423.1| integrase/recombinase XerD [Corynebacterium jeikeium ATCC 43734] Length = 299 Score = 125 bits (314), Expect = 9e-27, Method: Composition-based stats. Identities = 50/276 (18%), Positives = 95/276 (34%), Gaps = 23/276 (8%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS----GVESR 126 + L++ Y + ++V++ +++ D+ + G +++T I + Sbjct: 7 RKLVTAYIRHLKTERDVSVHTLSNYQRDLDRYLVWLGSKALQEVTATDIEDHLVYLRKDL 66 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 SSA + L ++R L +A +A + V P + + + ++ + Sbjct: 67 NLAASSAARGLAAIRGLHSFAHTDGRLAFDVAADVPTPSQGGSIPKALSLAQVEALLNAV 126 Query: 187 SEGS-------QPRLAFEFLLYSGLRCSDSCRAGVQHL-QNNIFSIKTQKTGTIITVEL- 237 G + R E L +G R ++ V L + + K G V L Sbjct: 127 PAGDGASQINIRDRALLEMLYSTGARITELLDLDVDDLDREQRVLLVRGKGGKERIVPLG 186 Query: 238 PDGFMK----LLAMTPI----GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHG 288 L+ P G F+NN ++ A AG+ S H Sbjct: 187 RPALQAVERYLVRARPSLNKKGSPALFLNNRGARLGRQSGFKIVSQAAEAAGLEHVSPHS 246 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 +R AT + GA + G +V + YTK Sbjct: 247 LRHSFATHLLEGGADIRVVQELLGHASVATTQIYTK 282 >gi|91201862|emb|CAJ74922.1| similar to site-specific recombinase [Candidatus Kuenenia stuttgartiensis] Length = 295 Score = 125 bits (314), Expect = 9e-27, Method: Composition-based stats. Identities = 48/273 (17%), Positives = 103/273 (37%), Gaps = 24/273 (8%) Query: 88 AVNSRISFESYFDQIIR-KSGD--FDYRKITTKHIRSGVESRKHT---PSSAIQFLTSMR 141 A+N+ ++S I+ G D+ I I S + S KH +S + + S+R Sbjct: 19 AMNTIHGYQSDLQLFIKFLLGKNIHDFSTIRPNIITSFIISEKHRGQSVNSINRAIVSIR 78 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRLAFE 197 + +K+ + + + NP +S++ PK + ++ S G + + E Sbjct: 79 MFYKFLILEGKLQKNPLVSLDSPKLWKKLPYVVPIHKIEDLLSAADVKTKLGIRNKAILE 138 Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI---------ITVELPDGFMKLLAMT 248 L +G R S+ + + IK + G+ ++ + + + Sbjct: 139 LLYATGARVSEVATISLNGINLEYGYIKCKGKGSKERIVPLGKKASIAIQEYLTTVRPQI 198 Query: 249 PIGKET--FFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATA 304 + + F++ + + + K A KAG+ + S H +R AT + GA Sbjct: 199 KDSQNSHYLFLSRTGRPLRRENIWLIVKNCALKAGITEAISPHKLRHSFATHLLENGADL 258 Query: 305 HELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 + G ++ + YT ++ L + + Sbjct: 259 RAVQEMLGHVSISTTQIYTH-VNKQHLKAIHQK 290 >gi|193068085|ref|ZP_03049050.1| tyrosine recombinase XerC [Escherichia coli E110019] gi|192958705|gb|EDV89143.1| tyrosine recombinase XerC [Escherichia coli E110019] Length = 298 Score = 125 bits (314), Expect = 9e-27, Method: Composition-based stats. Identities = 40/270 (14%), Positives = 88/270 (32%), Gaps = 20/270 (7%) Query: 75 ISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITT------KHIRSGVESRK 127 + Y + L+ + ++++ + II + + + ++ + Sbjct: 8 VERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRKG 67 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186 +S L+++R F W V Q + NP V PK + +DM + Sbjct: 68 LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDIDI 127 Query: 187 --SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFMK 243 + R E + +GLR S+ ++HL + G + + + Sbjct: 128 NDPLAVRDRAMLEVMYGTGLRLSELVGLDIKHLDLESGEVWVMGKGCKERRLPIGRNAVA 187 Query: 244 LLAMT-------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSA 294 + + F++ ++++A F K G+N H +R A Sbjct: 188 WIEHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRHSFA 247 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTK 324 T ++ + G + + YT Sbjct: 248 THMLESSGDLRGVQELLGHANLSTTQIYTH 277 >gi|9626273|ref|NP_040609.1| integration protein [Enterobacteria phage lambda] gi|138569|sp|P03700|VINT_LAMBD RecName: Full=Integrase gi|215133|gb|AAA96562.1| integration protein [Enterobacteria phage lambda] gi|16209072|gb|AAL09849.1| integrase [CRIM helper plasmid pAH57] gi|16209183|gb|AAL09916.1| integrase [CRIM helper plasmid pINT-ts] gi|29415431|gb|AAO12751.1| integrase [CRIM plasmid pKD15] gi|29415712|gb|AAO12755.1| integrase [CRIM plasmid pKD16] gi|62825139|gb|AAY16131.1| lambda INT [Cloning vector lambda gt10] gi|63014370|gb|AAY25566.1| Int [Mus musculus] Length = 356 Score = 125 bits (314), Expect = 9e-27, Method: Composition-based stats. Identities = 61/343 (17%), Positives = 114/343 (33%), Gaps = 25/343 (7%) Query: 7 LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHE---STFIPAYMSALTGSTPKREYINS 63 LPP + R+ Y G+ L + I A + +G K Sbjct: 12 LPPNLY---IRNNGYYCYRDPRTGKEFGLGRDRRIAITEAIQANIELFSGHKHKPLTARI 68 Query: 64 PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123 TL + Y K + + I++ S I R D ITTK I + + Sbjct: 69 NSDNSVTLHSWLDRYEKILASRGIKQKTLINYMSKIKAIRRGLPDAPLEDITTKEIAAML 128 Query: 124 ESRKH--TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 +SA +++ F+ A+ + ++ N + K + R E ++ Sbjct: 129 NGYIDEGKAASAKLIRSTLSDAFREAIAEGHITTNHVAATRAAKSEVRRSRLTADEYLKI 188 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE----- 236 +++ S RLA E + +G R D C + + ++ KTG I + Sbjct: 189 YQAAESSPCWLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAIPTALHI 248 Query: 237 ----LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-----NKSAH 287 + +G ET + ++ +++ S +F +G+ + H Sbjct: 249 DALGISMKETLDKCKEILGGETIIASTRREPLSSGTVSRYFMRARKASGLSFEGDPPTFH 308 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 +R + + + G K+ A Y DR R Sbjct: 309 ELR-SLSARLYEKQISDKFAQHLLGHKSDTMASQY--RDDRGR 348 >gi|152972799|ref|YP_001337945.1| site-specific tyrosine recombinase XerC [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|150957648|gb|ABR79678.1| tyrosine recombinase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 300 Score = 125 bits (314), Expect = 9e-27, Method: Composition-based stats. Identities = 40/259 (15%), Positives = 89/259 (34%), Gaps = 19/259 (7%) Query: 85 GSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIR--SGVESRKH-TPSSAIQFLT 138 L+ + ++++ D +I ++G + + +R + R P+S L+ Sbjct: 21 RQLSPITLLNYQRQLDALIALADEAGLKSWSQCDAAQVRSFAVRSRRAGLGPASLALRLS 80 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQPRLA 195 ++R F W V Q ++ NP + PK + +D+ + + R Sbjct: 81 ALRSFFDWLVGQGELSANPAKGIAAPKIPRHLPKNIDVDDVNRLLDIDLNDPLAVRDRAM 140 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMKLLAMT------ 248 E + +GLR S+ ++HL K + + + + Sbjct: 141 LEVMYGAGLRLSELVNLDIKHLDLESGEVWVMGKGSKERRLPIGRNAVAWIEHWLDLRGL 200 Query: 249 -PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAH 305 + F++ ++++A F + G+N H +R AT ++ Sbjct: 201 FGTDDDALFLSKLGKRISARNVQKRFAEWGIRQGLNSHVHPHKLRHSFATHMLESSGDLR 260 Query: 306 ELMATYGWKTVDQAETYTK 324 + G + + YT Sbjct: 261 GVQELLGHANLSTTQIYTH 279 >gi|225619262|ref|YP_002720488.1| tyrosine recombinase XerD [Brachyspira hyodysenteriae WA1] gi|225214081|gb|ACN82815.1| tyrosine recombinase XerD [Brachyspira hyodysenteriae WA1] Length = 309 Score = 125 bits (314), Expect = 9e-27, Method: Composition-based stats. Identities = 39/279 (13%), Positives = 100/279 (35%), Gaps = 23/279 (8%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYR-----KITTKHIRSGVESRKH 128 L+ E+ + A ++ S+ + + + + T + + ++ + Sbjct: 17 LLEEFSDYLQTLNFAAHTINSYNKDLKEYFQFLHNKNIPLDEANHYTVRDYLTFLKEKSL 76 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 T S+ + L+S++ +K+ +R Y N + ++ PKR+ + + +D+ + Sbjct: 77 TNSTMSRHLSSIKKFYKYLIRNGYSDKNRIVDMKSPKREEHIAKFLSIDDIDNILAIDDG 136 Query: 189 GS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII-TVELPD---- 239 G + ++ F+ GLR S+ + ++ +++ G+ + + + Sbjct: 137 GDFTLIRDKMMALFMYAIGLRVSELASLKLSMIKKGSETLRICGKGSKVRDIPILPIIYE 196 Query: 240 -------GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVR 290 + + FIN + ++ K A + + S H +R Sbjct: 197 NWDVYMEKRRIIQREYSENNDYIFINRFGKPISDRSIRTSMKRLIRNANISIDFSPHTLR 256 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 AT + A + G +T+ + YT + Sbjct: 257 HTFATHLLNNDAEIRGVQELLGHETIATTQRYTHVTNSR 295 >gi|118479053|ref|YP_896204.1| site-specific tyrosine recombinase XerC [Bacillus thuringiensis str. Al Hakam] gi|228986974|ref|ZP_04147100.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|118418278|gb|ABK86697.1| tyrosine recombinase XerC subunit [Bacillus thuringiensis str. Al Hakam] gi|228772752|gb|EEM21192.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 302 Score = 125 bits (314), Expect = 9e-27, Method: Composition-based stats. Identities = 44/272 (16%), Positives = 96/272 (35%), Gaps = 26/272 (9%) Query: 85 GSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIRSGV---ESRKHTPSSAIQFLT 138 + + + S+++ + + + G + IT +R + K S + ++ Sbjct: 21 RNYSKYTIASYQNDLEHFVQFMEREGISSFLDITYADVRLYLTTLHDEKLARKSVARKVS 80 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRL 194 S+R L+++ +R+ Y NP PK++ + E++++ G + + Sbjct: 81 SLRSLYRFLMREGYRKDNPFALASLPKKELSIPKFLYAEELEELFEVSDTETPLGQRNQA 140 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE------------LPDGF 241 E + +G+R S+ + + + +I K + + +G Sbjct: 141 LLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQRYIPFGSYAQDALITYIENGR 200 Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299 +L T F+N + + KA + S H +R AT D Sbjct: 201 KQLAEKTEEQSHMVFLNAKGTPLTSRGVRYVLNELIKKASLTMRISPHMLRHTFATHMLD 260 Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRL 331 GA + G + + + YT + RL Sbjct: 261 EGADLRTVQELLGHENLSTTQIYTH-VSKERL 291 >gi|94266574|ref|ZP_01290258.1| Tyrosine recombinase XerD [delta proteobacterium MLMS-1] gi|93452792|gb|EAT03324.1| Tyrosine recombinase XerD [delta proteobacterium MLMS-1] Length = 325 Score = 125 bits (314), Expect = 9e-27, Method: Composition-based stats. Identities = 45/273 (16%), Positives = 89/273 (32%), Gaps = 27/273 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDY-------RKITTKHIRSGVE---SRKHTPSSAI 134 LA N+ ++ + +IT +H+R+ +E R+ S Sbjct: 43 RRLAANTLTAYHTDLLSFFDFLARRRPTPAISGPAEITPEHLRAYLEACRRRQIAARSNA 102 Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS----FWSEGS 190 + L+++R F++ R+ + +P ++ PK + +++ Q + Sbjct: 103 RRLSALRAFFRFLRRENLIPADPSALLDLPKPGRPLPKVLNLDEVNQLLAGPAAATPLAL 162 Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPI 250 + L +G+R S+ V + K + + LA Sbjct: 163 RDHAMLHLLYATGMRVSELVNLPVAAVNQAGHLRVLGKGSKERLIPFGAAAGRSLARYIT 222 Query: 251 GKET----------FFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISA 298 F+ N M +F + +A ++K H +R AT Sbjct: 223 QGRPRLLKKRRSDFLFVTNRGTAMTRLRFWQIIRDRARVCRIDKEVGPHVLRHSFATHLL 282 Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 + GA + A G + + YT D RL Sbjct: 283 EHGADLRAVQAMLGHADIATTQIYTH-VDAQRL 314 >gi|255692650|ref|ZP_05416325.1| tyrosine recombinase XerC [Bacteroides finegoldii DSM 17565] gi|260621626|gb|EEX44497.1| tyrosine recombinase XerC [Bacteroides finegoldii DSM 17565] Length = 293 Score = 125 bits (314), Expect = 9e-27, Method: Composition-based stats. Identities = 48/276 (17%), Positives = 105/276 (38%), Gaps = 24/276 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIR----KSGDFDYRKITTKHIRSGV---ES 125 LI + + + + + +++ Q+ + G+FD ++ + IR + Sbjct: 2 LIESFLDYLRYERNYSDKTVLAYGEDIRQLQEFAQEEYGEFDPLEVEAELIREWIVSLMD 61 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + +T +S + L+++R +K+ +++ V ++P + PK K + +M + Sbjct: 62 KGYTSTSVNRKLSTLRTFYKFLLKKGEVTVDPLRKIVGPKNKKTLPVFLKENEMNKLLDE 121 Query: 186 WS-----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPD 239 +G + RL E +G+R S+ + + + +K T K + D Sbjct: 122 TDFGEGFKGCRDRLIIEMFYATGMRLSELIDLDDKDVDFSGSCLKVTGKRNKQRLIPFGD 181 Query: 240 GFMKLL--------AMTPIGKETFFINNDKQKMNATQFSIWFKA-KATKAGVNK-SAHGV 289 + M P E FF+ + +++ K + A + K S H + Sbjct: 182 ELRDWMLGYIDVRNEMIPERSEAFFVRENGERLYKNLVYNLVKRNLSKVATLKKKSPHVL 241 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 R AT + A + G +++ E YT Sbjct: 242 RHTFATTMLNNNAELGAVKELLGHESITTTEIYTHA 277 >gi|225852955|ref|YP_002733188.1| phage integrase [Brucella melitensis ATCC 23457] gi|256263566|ref|ZP_05466098.1| phage integrase [Brucella melitensis bv. 2 str. 63/9] gi|225641320|gb|ACO01234.1| phage integrase [Brucella melitensis ATCC 23457] gi|263093614|gb|EEZ17619.1| phage integrase [Brucella melitensis bv. 2 str. 63/9] Length = 164 Score = 125 bits (314), Expect = 9e-27, Method: Composition-based stats. Identities = 33/155 (21%), Positives = 60/155 (38%), Gaps = 14/155 (9%) Query: 205 RCSDSCRAGVQH-------LQN-----NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGK 252 R D L + F ++ KTG + + + ++L TP Sbjct: 9 RRGDIAALRWDQRCSKTVFLDGEAKSVDGFELRQGKTGKRLFLPITPILSEVLEATPRQG 68 Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMAT 310 ET + + + + A + K + HG+RK I A+ GA+ ++M T Sbjct: 69 ETVLVTAYGEPFSPKSLTGRMADWTASAKLPKGFTLHGLRKTLGKILAEGGASTRQIMDT 128 Query: 311 YGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDS 345 +G + AE YT+ A++ RL R+ + + Sbjct: 129 FGHDDIAHAELYTREAEQARLATDGMSRVVRLKRN 163 >gi|283781943|ref|YP_003372698.1| integrase family protein [Pirellula staleyi DSM 6068] gi|283440396|gb|ADB18838.1| integrase family protein [Pirellula staleyi DSM 6068] Length = 314 Score = 125 bits (314), Expect = 9e-27, Method: Composition-based stats. Identities = 48/305 (15%), Positives = 99/305 (32%), Gaps = 31/305 (10%) Query: 55 TPKREYINSPRKKPTT-----LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF 109 P + + P EY ++ LA NS +++ + R GD Sbjct: 2 RPLKPKLVVPAAVAGAGQGDRWARSFIEYLRTE--CHLAKNSVAAYQRDMTRFCRWLGDR 59 Query: 110 DYRKITTKHIRSGVESRKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166 K+T + + + + P S + + ++++ ++ + + NP + K Sbjct: 60 FIPKLTVRDLTDYLAFMREENLDPKSIARHVVTLKLFLRYLQLEGIIKDNPAELLGTTKT 119 Query: 167 KTEGIRPWTKEDMQQFKS----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNI 221 + + + + R E L +G R S+ V+ L+ + Sbjct: 120 AATIPDVLSPTVAARLLDAPQPYDPLFRRDRALLELLYATGCRASEVSVMEVRDLRIEDR 179 Query: 222 FSIKTQKTGTIITVELPDGFMKLLAMTPIGKET-------------FFINNDKQKMNATQ 268 F + K V L D + + + +++ Q++ + Sbjct: 180 FCLARGKGSKERLVPLGDPALAAVEAYLEHERPKLAAKSKQGVPPWLLLSSRGQRLTRQK 239 Query: 269 FSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 K A + G S H +R AT GA ++ G ++ + YT Sbjct: 240 IWELVKQYALRCGAPASMSPHTLRHSFATHLLSGGADLRQVQELLGHASIGTTQIYTH-V 298 Query: 327 DRIRL 331 D+ RL Sbjct: 299 DQSRL 303 >gi|210623381|ref|ZP_03293778.1| hypothetical protein CLOHIR_01728 [Clostridium hiranonis DSM 13275] gi|210153642|gb|EEA84648.1| hypothetical protein CLOHIR_01728 [Clostridium hiranonis DSM 13275] Length = 376 Score = 125 bits (314), Expect = 9e-27, Method: Composition-based stats. Identities = 46/352 (13%), Positives = 122/352 (34%), Gaps = 39/352 (11%) Query: 17 RHGKIIYYF---RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP-RKKPTTLK 72 + G +Y+ + G+R ++ +++ + L + + + Sbjct: 14 KRGNTYHYYFDGKTIDGKRNKIEKSAKTSNKSEALKQLEKAIEEYYMSEIDFTLSDISFA 73 Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQI-IRKSGDFDYRKITTKHIRSGVESRKHTPS 131 ++ L ++ +++ ++ I+ + + I KHI++ ++ Sbjct: 74 EAREKFLSEYVANDLKDSTYTNYKQKLNKPQIKVLEIYLLKDIRAKHIQNIIDYMALNGF 133 Query: 132 SAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR--PWTKEDMQQFKSFW 186 S L ++ LF + +R E + NPC V P + T+ R T +++++ + + Sbjct: 134 SKNMVKNTLRTISSLFNFCIRAELIKDNPCDKVVLPSKLTQPERKVALTNKEVKRILNRF 193 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-----------------IFSIKTQKT 229 + L+ LY+G+R + C +++ + + Sbjct: 194 K-NTHWYLSLMLPLYTGMRRGECCGLRWKNVDLDKGIIYVRENLTQDKGKKWIISTPKTK 252 Query: 230 GTIITVELPDGFMKLLA----------MTPIGKETFFINNDKQKMNATQFSIWFKAKATK 279 +I T+ +P ++ L + + ++ + + Sbjct: 253 SSIRTINIPLPLLEALKWQLERNKSNNVATNSDTHVLVRDNGSIITNDTLKYLSRVINYD 312 Query: 280 AGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIR 330 G+ + H +R AT+ + GA ++ G ++ + Y D +R Sbjct: 313 LGIKFNYHNLRHTYATLLIEKGANIKDVSVLLGHASIKTTMDIYVNNTDNMR 364 >gi|30021919|ref|NP_833550.1| site-specific tyrosine recombinase XerC [Bacillus cereus ATCC 14579] gi|29897475|gb|AAP10751.1| Integrase/recombinase (XerC/CodV family) [Bacillus cereus ATCC 14579] Length = 294 Score = 125 bits (314), Expect = 9e-27, Method: Composition-based stats. Identities = 43/272 (15%), Positives = 97/272 (35%), Gaps = 26/272 (9%) Query: 85 GSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIRSGV---ESRKHTPSSAIQFLT 138 + + + S+++ + + + G + +T +R + K S + ++ Sbjct: 13 RNYSKYTIASYQNDLEHFVQFMEREGISSFLDVTYADVRLYLTTLHDEKLARKSVARKVS 72 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRL 194 S+R L+++ +R+ Y NP PK++ + E++++ G + + Sbjct: 73 SLRSLYRFLMREGYRKDNPFALASLPKKELSIPKFLYAEELEELFEVSDTETPLGQRNQA 132 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE------------LPDGF 241 E + +G+R S+ + + + +I K + + +G Sbjct: 133 LLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQRYIPFGSYAQDSLITYIENGR 192 Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299 +L+ T F+N + + KA + S H +R AT D Sbjct: 193 KQLVNKTDEDSHMVFLNAKGTPLTSRGVRYVLNELIKKASLTMRISPHMLRHTFATHMLD 252 Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRL 331 GA + G + + + YT + RL Sbjct: 253 EGADLRTVQELLGHENLSTTQIYTH-VSKERL 283 >gi|309789594|ref|ZP_07684175.1| phage integrase family protein [Oscillochloris trichoides DG6] gi|308228330|gb|EFO81977.1| phage integrase family protein [Oscillochloris trichoides DG6] Length = 294 Score = 125 bits (314), Expect = 1e-26, Method: Composition-based stats. Identities = 44/274 (16%), Positives = 109/274 (39%), Gaps = 24/274 (8%) Query: 75 ISEYRKSAHWGSL-AVNSRISFESYFDQII---RKSGDFDYRKITTKHIRSGV---ESRK 127 I ++ S + + ++ ++ + +Q+ D++ +T I + + R Sbjct: 5 IEQFLVSMATDQMRSEHTCSAYRTDLEQLRLFLAAREVADWQAVTHDDILAFMISLRERG 64 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF----- 182 + S+ + +M+ F + + Q+ + +P ++ PK + + T+ DM + Sbjct: 65 YAMSTMARRTAAMKSFFGFLLEQQIIKKDPTSHIDSPKVNRDRPKAITQFDMDELLELPL 124 Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVEL---- 237 +S E + + E L +G+R S+ + + + +++ K+G + + Sbjct: 125 RSSGPESLRDKAMLELLAATGMRVSELVTLELADISLSAGTVRCRSKSGRERVLPIGLTA 184 Query: 238 PDGFMKLLAMTP----IGKET--FFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVR 290 + L + ET F+N+ +++ F + K A + G+ + + H +R Sbjct: 185 TTALEEYLDIARNQLVRSGETPILFLNHRGKQLTRQGFWLILKGYADQIGLHDLTPHTLR 244 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK 324 A GA E+ G ++ + YT+ Sbjct: 245 HSFAAHLVYEGADLREVQERLGHASLSTTQIYTQ 278 >gi|218898984|ref|YP_002447395.1| tyrosine recombinase XerC [Bacillus cereus G9842] gi|228909656|ref|ZP_04073479.1| Tyrosine recombinase xerC [Bacillus thuringiensis IBL 200] gi|228940919|ref|ZP_04103478.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228973848|ref|ZP_04134424.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228980438|ref|ZP_04140748.1| Tyrosine recombinase xerC [Bacillus thuringiensis Bt407] gi|218544580|gb|ACK96974.1| tyrosine recombinase XerC [Bacillus cereus G9842] gi|228779258|gb|EEM27515.1| Tyrosine recombinase xerC [Bacillus thuringiensis Bt407] gi|228785873|gb|EEM33876.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228818755|gb|EEM64821.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228849945|gb|EEM94776.1| Tyrosine recombinase xerC [Bacillus thuringiensis IBL 200] gi|326941600|gb|AEA17496.1| site-specific tyrosine recombinase XerC [Bacillus thuringiensis serovar chinensis CT-43] Length = 299 Score = 125 bits (314), Expect = 1e-26, Method: Composition-based stats. Identities = 43/272 (15%), Positives = 97/272 (35%), Gaps = 26/272 (9%) Query: 85 GSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIRSGV---ESRKHTPSSAIQFLT 138 + + + S+++ + + + G + +T +R + K S + ++ Sbjct: 18 RNYSKYTIASYQNDLEHFVQFMEREGISSFLDVTYADVRLYLTTLHDEKLARKSVARKVS 77 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRL 194 S+R L+++ +R+ Y NP PK++ + E++++ G + + Sbjct: 78 SLRSLYRFLMREGYRKDNPFALASLPKKELSIPKFLYAEELEELFEVSDTGTPLGQRNQA 137 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE------------LPDGF 241 E + +G+R S+ + + + +I K + + +G Sbjct: 138 LLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQRYIPFGSYAQDSLITYIENGR 197 Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299 +L+ T F+N + + KA + S H +R AT D Sbjct: 198 KQLVNKTDEDSRMVFLNAKGTPLTSRGVRYVLNELIKKASLTMRISPHMLRHTFATHMLD 257 Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRL 331 GA + G + + + YT + RL Sbjct: 258 EGADLRTVQELLGHENLSTTQIYTH-VSKERL 288 >gi|228902334|ref|ZP_04066491.1| Tyrosine recombinase xerC [Bacillus thuringiensis IBL 4222] gi|228966776|ref|ZP_04127820.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar sotto str. T04001] gi|228792875|gb|EEM40433.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar sotto str. T04001] gi|228857303|gb|EEN01806.1| Tyrosine recombinase xerC [Bacillus thuringiensis IBL 4222] Length = 299 Score = 125 bits (314), Expect = 1e-26, Method: Composition-based stats. Identities = 43/272 (15%), Positives = 97/272 (35%), Gaps = 26/272 (9%) Query: 85 GSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIRSGV---ESRKHTPSSAIQFLT 138 + + + S+++ + + + G + +T +R + K S + ++ Sbjct: 18 RNYSKYTIASYQNDLEHFVQFMEREGISSFLDVTYADVRLYLTTLHDEKLARKSVARKVS 77 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRL 194 S+R L+++ +R+ Y NP PK++ + E++++ G + + Sbjct: 78 SLRSLYRFLMREGYRKDNPFALASLPKKELSIPKFLYAEELEELFEVSDTETPLGQRNQA 137 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE------------LPDGF 241 E + +G+R S+ + + + +I K + + +G Sbjct: 138 LLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQRYIPFGSYAQDSLITYIENGR 197 Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299 +L+ T F+N + + KA + S H +R AT D Sbjct: 198 KQLVNKTDEDSRMVFLNAKGTPLTSRGVRYVLNELIKKASLTMRISPHMLRHTFATHMLD 257 Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRL 331 GA + G + + + YT + RL Sbjct: 258 EGADLRTVQELLGHENLSTTQIYTH-VSKERL 288 >gi|84686929|ref|ZP_01014813.1| tyrosine recombinase XerD [Maritimibacter alkaliphilus HTCC2654] gi|84665126|gb|EAQ11606.1| tyrosine recombinase XerD [Rhodobacterales bacterium HTCC2654] Length = 315 Score = 125 bits (314), Expect = 1e-26, Method: Composition-based stats. Identities = 47/267 (17%), Positives = 88/267 (32%), Gaps = 29/267 (10%) Query: 90 NSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVR 149 F Y D++ G D + E++ S+ + L++++ ++++A Sbjct: 33 RDLKDFSGYLDRMGEDFGGADRATVEA--YLIDCEAQGLAVSTRARRLSAIKQIYRFAFE 90 Query: 150 QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ---PRL----AFEFLLYS 202 + + NP L + P + + +++D+++ + + + RL E L + Sbjct: 91 EGWRTDNPTLRITGPGKARRLPKTLSEDDVERLLNAARQHGRTDADRLRNACMMEVLYAT 150 Query: 203 GLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFMKLLAM-------------- 247 G+R S+ V + + + K G V L LA Sbjct: 151 GMRVSELVTLPVSAARGDPRMLLVMGKGGKERMVPLSPPARAALAAWLDVRDAAEDAARS 210 Query: 248 --TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSATISADAGA 302 + F + +F K A AGV + H +R AT GA Sbjct: 211 KGAKPSRFLFPSTGKDGHLTRHRFHGLIKDIAVAAGVSPETVTPHRLRHAFATHLLAHGA 270 Query: 303 TAHELMATYGWKTVDQAETYTKGADRI 329 + G V E YT D Sbjct: 271 DLRAIQTLLGHADVSTTEIYTHVLDER 297 >gi|65321158|ref|ZP_00394117.1| COG4974: Site-specific recombinase XerD [Bacillus anthracis str. A2012] Length = 302 Score = 125 bits (314), Expect = 1e-26, Method: Composition-based stats. Identities = 44/272 (16%), Positives = 96/272 (35%), Gaps = 26/272 (9%) Query: 85 GSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIRSGV---ESRKHTPSSAIQFLT 138 + + + S+++ + + + G + IT +R + K S + ++ Sbjct: 21 RNYSKYTIASYQNDLEHFVQFMEREGISSFLDITYADVRLYLTTLHDEKLARKSVARKVS 80 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRL 194 S+R L+++ +R+ Y NP PK++ + E++++ G + + Sbjct: 81 SLRSLYRFLMREGYRKDNPFALASLPKKELSIPKFLYAEELEELFEVSDTETPLGQRNQA 140 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE------------LPDGF 241 E + +G+R S+ + + + +I K + + +G Sbjct: 141 LLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQRYIPFGSYAQDALITYIENGR 200 Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299 +L T F+N + + KA + S H +R AT D Sbjct: 201 KQLAEKTEEQSHMVFLNAKGTPLTSRGVRYVLNELIKKASLTMRISPHILRHTFATHMLD 260 Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRL 331 GA + G + + + YT + RL Sbjct: 261 EGADLRTVQELLGHENLSTTQIYTH-VSKERL 291 >gi|228960047|ref|ZP_04121711.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar pakistani str. T13001] gi|228799563|gb|EEM46516.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar pakistani str. T13001] Length = 299 Score = 125 bits (314), Expect = 1e-26, Method: Composition-based stats. Identities = 43/272 (15%), Positives = 98/272 (36%), Gaps = 26/272 (9%) Query: 85 GSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFLT 138 + + + S+++ + + + G + +T +R + + K S + ++ Sbjct: 18 RNYSKYTIASYQNDLEHFVQFMEREGISSFLDVTYADVRLYLTTLYDEKLARKSVARKVS 77 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRL 194 S+R L+++ +R+ Y NP PK++ + E++++ G + + Sbjct: 78 SLRSLYRFLMREGYRKDNPFALASLPKKELSIPKFLYAEELEELFEVSDTETPLGQRNQA 137 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE------------LPDGF 241 E + +G+R S+ + + + +I K + + +G Sbjct: 138 LLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQRYIPFGSYAQDSLITYIENGR 197 Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299 +L+ T F+N + + KA + S H +R AT D Sbjct: 198 KQLVNKTDEDSHMVFLNAKGTPLTSRGVRYVLNELIKKASLTMRISPHMLRHTFATHMLD 257 Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRL 331 GA + G + + + YT + RL Sbjct: 258 EGADLRTVQELLGHENLSTTQIYTH-VSKERL 288 >gi|189465402|ref|ZP_03014187.1| hypothetical protein BACINT_01751 [Bacteroides intestinalis DSM 17393] gi|189437676|gb|EDV06661.1| hypothetical protein BACINT_01751 [Bacteroides intestinalis DSM 17393] Length = 294 Score = 125 bits (314), Expect = 1e-26, Method: Composition-based stats. Identities = 48/276 (17%), Positives = 99/276 (35%), Gaps = 24/276 (8%) Query: 73 WLISEYRKSAHW-GSLAVNSRISFESYFDQI----IRKSGDFDYRKITTKHIRSGV---E 124 WL + + + + + S+ Q + GD ++ + +R + Sbjct: 2 WLTDSFLDYLQYERNYSEETIKSYREDLRQFEEFAREEIGDSAPSEVKAELVREWIVSLM 61 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 R +T +S + L+S+R +K+ +R+ VA+NP + PK K + DM + Sbjct: 62 DRGYTSTSINRKLSSLRSFYKFLLRKGEVAVNPLQKITGPKNKKPLPAFLRESDMDRLLD 121 Query: 185 FWS-----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELP 238 +G + + E +G+R S+ + + + IK T K + Sbjct: 122 EVDFGEGFKGCRDHMIIEMFYATGVRLSELIGLDNKDVDFSSSLIKVTGKRNKQRLIPFG 181 Query: 239 DGFMKLLA--------MTPIGKETFFINNDKQKMNATQFSIWFKA--KATKAGVNKSAHG 288 + + PI FF+ + ++++ + K +S H Sbjct: 182 EELKIAMMEYVDVRNEAVPIRTNAFFVRENGERLSRSIVENLVKRNLSKVVTLKKRSPHV 241 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 +R AT + A + G +++ E YT Sbjct: 242 LRHTFATTMLNHDAELGAIKELLGHESLATTEVYTH 277 >gi|288559967|ref|YP_003423453.1| tyrosine recombinase XerC [Methanobrevibacter ruminantium M1] gi|288542677|gb|ADC46561.1| tyrosine recombinase XerC [Methanobrevibacter ruminantium M1] Length = 326 Score = 125 bits (314), Expect = 1e-26, Method: Composition-based stats. Identities = 47/275 (17%), Positives = 97/275 (35%), Gaps = 25/275 (9%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISF----ESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126 + ++ Y + + N+ ++ S D + + G +D RK + + + Sbjct: 39 FEEMLENYIIEMEIRNYSENTVKTYSSIIRSMIDYMSSEEGVYDGRKFLACFKKYIRDLK 98 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 K S + V K+ + + V+ PKR + T+++++ Sbjct: 99 KDQDVSQNYIYLNTVVCKKFLEFNDIYFL---EDVQNPKRTKSLPKSLTEKEVKSLIDAV 155 Query: 187 -----------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235 + ++ EFL +GLR S+ + + + + +I+ + G + Sbjct: 156 QITDEDSELKKKAKMRDKVILEFLYSTGLRISELVKLQKKDIDFDERTIRVRGKGEKDRI 215 Query: 236 ELPDG-----FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHG 288 L D + E FIN + +K+ + K A KAG+ K + H Sbjct: 216 VLFDENTRDLIDNYIETQNQKSEYLFINKNGRKLTPRYVQMMIKEYAEKAGIKKKVTPHV 275 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 +R AT G + G ++ + YT Sbjct: 276 LRHSFATHLLKNGVDIRVIQQLLGHSSLSTTQIYT 310 >gi|254476039|ref|ZP_05089425.1| tyrosine recombinase XerD [Ruegeria sp. R11] gi|214030282|gb|EEB71117.1| tyrosine recombinase XerD [Ruegeria sp. R11] Length = 332 Score = 125 bits (314), Expect = 1e-26, Method: Composition-based stats. Identities = 40/272 (14%), Positives = 92/272 (33%), Gaps = 32/272 (11%) Query: 88 AVNSRISFESYFDQII-----RKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRV 142 A N+ +++ + R+ G + + ++ + ++ + L++++ Sbjct: 25 AHNTLLAYGRDLKDVAAWLAARQIGFETASRDQIESYLIACDAEGLSRATRARRLSAIKQ 84 Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-------SEGSQPRLA 195 ++++A + + NP + ++ P R+ + ++ + + + Sbjct: 85 IYRFAFDEGWRDDNPAIQIKGPGRQKSLPKTLEVIEVDKLLDAARQSGRNLPDRIRNTCL 144 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKE- 253 E L +G+R S+ V + + + K G V L LA ++ Sbjct: 145 MELLYATGMRVSELVGLPVTAARGDPRMLLVLGKGGKERMVPLSPPARDALAAWLAHRDK 204 Query: 254 -------------TFFINNDKQ--KMNATQFSIWFKAKATKAGV---NKSAHGVRKFSAT 295 + + + + +F + K A AG+ S H +R AT Sbjct: 205 AEEAAVAKGAPPSRYLFPSRGKSGHLTRHRFYLLIKEFAVTAGISPEAVSPHTLRHAFAT 264 Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGAD 327 GA + A G + E YT D Sbjct: 265 HLLANGADLRAIQALLGHADIATTEIYTHVLD 296 >gi|15615028|ref|NP_243331.1| integrase/recombinase [Bacillus halodurans C-125] gi|34223073|sp|Q9KA25|XERC_BACHD RecName: Full=Tyrosine recombinase xerC gi|10175085|dbj|BAB06184.1| integrase/recombinase [Bacillus halodurans C-125] Length = 303 Score = 125 bits (314), Expect = 1e-26, Method: Composition-based stats. Identities = 49/271 (18%), Positives = 98/271 (36%), Gaps = 28/271 (10%) Query: 88 AVNSRISFESYFDQIIRKSGDFDYRKITT------KHIRSGVESRKHTPSSAIQFLTSMR 141 + ++ +++E +H + + +++ S+ + L+++R Sbjct: 23 SPHTIVNYELDLRHFRDFMEQQSIPSFAAVSYAFVRHYLTVLYEQEYARSTVSRKLSTLR 82 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRLAFE 197 +++ VR+++V NP L PK + +E+M+Q + R FE Sbjct: 83 SFYQFLVREKWVMENPFLLAHTPKGVKKLPSFLYEEEMEQLLDALNGDSPLQLRNRALFE 142 Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVEL------------PDGFMKL 244 + SGLR S+ C +Q + +I ++ K V + +G KL Sbjct: 143 TIYASGLRVSECCGLKLQDVDLSIGTVFVFGKGRKERYVPIGSFACDAIQEYIENGREKL 202 Query: 245 LAMTPIGKET--FFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADA 300 L + F+N + +A + S H +R AT + Sbjct: 203 LKKSKSVDLPGDLFLNYRGGPLTERGVRKILHQALDQAALSTRVSPHSLRHSFATHLLNN 262 Query: 301 GATAHELMATYGWKTVDQAETYTK-GADRIR 330 GA + G + + + YT DR+R Sbjct: 263 GADLRVVQDLLGHENLSTTQVYTHVTKDRLR 293 >gi|262091726|gb|ACY25315.1| tyrosine recombinase XerD [uncultured actinobacterium] Length = 311 Score = 125 bits (314), Expect = 1e-26, Method: Composition-based stats. Identities = 34/271 (12%), Positives = 86/271 (31%), Gaps = 28/271 (10%) Query: 85 GSLAVNSRISFESYFDQ-----IIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139 + + ++ + +++ + + + + + S + + Sbjct: 18 QGRSPRTIEAYRRDLHRYEAFLVLKSCDVLSVQSPVIEQFIASLRAEGKAAKSVARMYAA 77 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS----FWSEGSQPRLA 195 +R++ ++ + + NP V+ K + + +++++ + + S + R Sbjct: 78 VRMMHRYLIEERLRPDNPTSGVDGVKVPSGIPKALSEDEVARILASVTGVDSFALRDRAL 137 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLA-------- 246 EFL +G R S++C + L ++ K V L Sbjct: 138 LEFLYATGARISEACGLSLSDLDMESQLVRLFGKGSKERIVPFGSHAKAALEEWLGAGGR 197 Query: 247 --------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKA--GVNKSAHGVRKFSATI 296 + F+ + +++ + A A G S H +R AT Sbjct: 198 TMLVSEQWAKRDHADAVFLGSRGTRLSRQAAWRIVQKFAQIAEVGDEVSPHVLRHSCATH 257 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGAD 327 GA + G +V + YT+ + Sbjct: 258 MLIHGADLRIVQELLGHASVSTTQVYTRVDN 288 >gi|255524155|ref|ZP_05391115.1| integrase family protein [Clostridium carboxidivorans P7] gi|296186613|ref|ZP_06855015.1| putative tyrosine recombinase XerD [Clostridium carboxidivorans P7] gi|255512140|gb|EET88420.1| integrase family protein [Clostridium carboxidivorans P7] gi|296048650|gb|EFG88082.1| putative tyrosine recombinase XerD [Clostridium carboxidivorans P7] Length = 292 Score = 125 bits (313), Expect = 1e-26, Method: Composition-based stats. Identities = 45/279 (16%), Positives = 104/279 (37%), Gaps = 24/279 (8%) Query: 77 EYRKSAHWGSLAVNSRISFESYFDQI-----IRKSGDFDYRKITTKHIRSGVESRKHTPS 131 +Y ++ +++ N+ ++ + R + ++ ++ S Sbjct: 7 KYIENLEKKNVSKNTMDAYVRDISKFYNFIKERNENVVEIEVVSIMAYVQQLQKEGRATS 66 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS- 190 S I+ + S+R +K+ + ++ NP ++ E PK K + T E++ S G+ Sbjct: 67 SIIRNIVSLRNFYKYLTIKGFINENPMINYEIPKVKHNIPKILTVEEVDTLLSTPDLGTN 126 Query: 191 ---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI--------ITVELPD 239 + + E L +G++ ++ + + + IK + + I ++ Sbjct: 127 KGIRDKAMLEVLYATGMKVTEILNITIYDINLKLAYIKCKGSKNQERIIPIGSIAIQCLQ 186 Query: 240 GFMKLL-AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAH----GVRKFSA 294 ++K+ + + FIN +M F K A AGV+K H +R A Sbjct: 187 EYLKIRSQINIYNLDLLFINLRGIQMTRQGFWKIVKYYAKAAGVDK--HINAFTLRHSFA 244 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 GA + G K + + Y+ + + ++ Sbjct: 245 VHLLQNGADIKSVQELLGHKDLSATQIYSSISRKNKIAE 283 >gi|62290365|ref|YP_222158.1| phage integrase family site specific recombinase [Brucella abortus bv. 1 str. 9-941] gi|82700287|ref|YP_414861.1| phage integrase [Brucella melitensis biovar Abortus 2308] gi|237815868|ref|ZP_04594865.1| phage integrase family site specific recombinase [Brucella abortus str. 2308 A] gi|254689663|ref|ZP_05152917.1| Phage integrase [Brucella abortus bv. 6 str. 870] gi|254697806|ref|ZP_05159634.1| Phage integrase [Brucella abortus bv. 2 str. 86/8/59] gi|254730695|ref|ZP_05189273.1| Phage integrase [Brucella abortus bv. 4 str. 292] gi|256257914|ref|ZP_05463450.1| Phage integrase [Brucella abortus bv. 9 str. C68] gi|260546903|ref|ZP_05822642.1| phage integrase [Brucella abortus NCTC 8038] gi|260755194|ref|ZP_05867542.1| integrase/recombinase [Brucella abortus bv. 6 str. 870] gi|260758413|ref|ZP_05870761.1| integrase/recombinase [Brucella abortus bv. 4 str. 292] gi|260762239|ref|ZP_05874582.1| integrase/recombinase [Brucella abortus bv. 2 str. 86/8/59] gi|260884210|ref|ZP_05895824.1| integrase/recombinase [Brucella abortus bv. 9 str. C68] gi|297248750|ref|ZP_06932468.1| phage integrase [Brucella abortus bv. 5 str. B3196] gi|62196497|gb|AAX74797.1| site-specific recombinase, phage integrase family [Brucella abortus bv. 1 str. 9-941] gi|82616388|emb|CAJ11449.1| Phage integrase [Brucella melitensis biovar Abortus 2308] gi|237789166|gb|EEP63377.1| phage integrase family site specific recombinase [Brucella abortus str. 2308 A] gi|260095953|gb|EEW79830.1| phage integrase [Brucella abortus NCTC 8038] gi|260668731|gb|EEX55671.1| integrase/recombinase [Brucella abortus bv. 4 str. 292] gi|260672671|gb|EEX59492.1| integrase/recombinase [Brucella abortus bv. 2 str. 86/8/59] gi|260675302|gb|EEX62123.1| integrase/recombinase [Brucella abortus bv. 6 str. 870] gi|260873738|gb|EEX80807.1| integrase/recombinase [Brucella abortus bv. 9 str. C68] gi|297175919|gb|EFH35266.1| phage integrase [Brucella abortus bv. 5 str. B3196] Length = 164 Score = 125 bits (313), Expect = 1e-26, Method: Composition-based stats. Identities = 33/155 (21%), Positives = 59/155 (38%), Gaps = 14/155 (9%) Query: 205 RCSDSCRAGVQH-------LQN-----NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGK 252 R D L + F ++ KTG + + + ++L TP Sbjct: 9 RRGDIAALRWDQRCSKTVFLDGEAKSVDGFELRQGKTGKRLFLPITPILSEVLEATPRQG 68 Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMAT 310 ET + + + + A + K + HG+RK I A+ GA+ ++M T Sbjct: 69 ETVLVTAYGEPFSPKSLTGRMVDWTASAKLPKGFTLHGLRKTLGKILAEGGASTRQIMDT 128 Query: 311 YGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDS 345 G + AE YT+ A++ RL R+ + + Sbjct: 129 LGHDDIAHAELYTREAEQARLATDGMSRVVRLKRN 163 >gi|217969617|ref|YP_002354851.1| tyrosine recombinase XerD [Thauera sp. MZ1T] gi|217506944|gb|ACK53955.1| tyrosine recombinase XerD [Thauera sp. MZ1T] Length = 309 Score = 125 bits (313), Expect = 1e-26, Method: Composition-based stats. Identities = 49/275 (17%), Positives = 92/275 (33%), Gaps = 23/275 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE----SRKHTPSSAIQFLTSM 140 LA N+ + S + R SR P+S + + + Sbjct: 31 HGLARNTLAGYRSDLARFAAWLETRAQRLPAAAGADLAAYLAEFSRAAKPASQRRLIAAW 90 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAF 196 R ++ + +A +P L+++ P+ + ++ ++ + +G + R Sbjct: 91 RRYYRLLLANREIAEDPTLAIDTPRAAERFPKTLSEPQVEALLAAPALDTPQGLRDRCML 150 Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-IITVELPDGFMKLLAM-------- 247 E L +GLR S+ + + N ++ G+ V L + L Sbjct: 151 EVLYAAGLRVSELVGLKIFAVGVNEGVVRVMGKGSKERLVPLGEIAADWLQRYLAEARPV 210 Query: 248 --TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGA 302 + F+ M+ F K A AG+ S H +R AT + GA Sbjct: 211 LLAGRSCDEIFVTRLGAAMSRQMFWRLIKHYALAAGIAPERISPHTLRHAFATHLLNHGA 270 Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 + G + + YT A R RL ++R Sbjct: 271 DLRVVQLLLGHADISTTQIYTHVA-RERLKQLHAR 304 >gi|218283546|ref|ZP_03489536.1| hypothetical protein EUBIFOR_02126 [Eubacterium biforme DSM 3989] gi|218215814|gb|EEC89352.1| hypothetical protein EUBIFOR_02126 [Eubacterium biforme DSM 3989] Length = 291 Score = 125 bits (313), Expect = 1e-26, Method: Composition-based stats. Identities = 45/270 (16%), Positives = 93/270 (34%), Gaps = 19/270 (7%) Query: 74 LISEYRKSAHWGS-LAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK----H 128 LI + K + + + + S+++ +Q + + + Sbjct: 4 LIERFLKYIYRKNTQSEKTIESYKNDLNQFKEYLTSQSIDSFESCDRLTFMNFLATLDHL 63 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-- 186 SS + ++ R + + + NP + ++ PK+ + E++Q+F + + Sbjct: 64 KASSIARKMSVYRSFYTYLAEYMGIIENPLIGIQTPKKSKQIPDFLFVEEIQEFLNSYND 123 Query: 187 --SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMK 243 + + R+ F + GLR S+ + + NN K V GF K Sbjct: 124 EKDDEYRDRILFTIMYACGLRVSECVNLEWKQIDLNNRIVHIRGKGDKDRIVPFYQGFEK 183 Query: 244 LLAMTPIG-------KETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSA 294 L + F+N + +++ ATK G++ H +R A Sbjct: 184 ELLEYKSKFWTKYAIDDHVFVNLKGKSLSSRGVQYLMDKHATKIGMHMKLHPHMLRHSFA 243 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTK 324 T D GA + G ++ + YT Sbjct: 244 THLLDNGADIRVVQELLGHSSLSTTQIYTH 273 >gi|229162767|ref|ZP_04290724.1| Tyrosine recombinase xerC [Bacillus cereus R309803] gi|228620649|gb|EEK77518.1| Tyrosine recombinase xerC [Bacillus cereus R309803] Length = 302 Score = 125 bits (313), Expect = 1e-26, Method: Composition-based stats. Identities = 43/272 (15%), Positives = 96/272 (35%), Gaps = 26/272 (9%) Query: 85 GSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIRSGV---ESRKHTPSSAIQFLT 138 + + + S+++ + + + G + +T +R + K S + ++ Sbjct: 21 RNYSKYTIASYQNDLEHFVQFMEREGISSFLDVTYADVRLYLTTLHDEKLARKSVARKVS 80 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRL 194 S+R L+++ +R+ Y NP PK++ + E++++ G + + Sbjct: 81 SLRSLYRFLMREGYRTDNPFALASLPKKELSIPKFLYAEELEELFEVSDTETPLGQRNQA 140 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE------------LPDGF 241 E + +G+R S+ + + + +I K + + +G Sbjct: 141 LLELMYGTGIRVSECVNLQLTDIDFAVGTILVMGKGKKQRYIPFGSYAQDALITYIENGR 200 Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299 +L T F+N + + KA + S H +R AT D Sbjct: 201 KQLANKTEEHSHMVFLNAKGTPLTSRGVRYVLNELIKKASLTMRISPHMLRHTFATHMLD 260 Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRL 331 GA + G + + + YT + RL Sbjct: 261 EGADLRTVQELLGHENLSTTQIYTH-VSKERL 291 >gi|169830964|ref|YP_001716946.1| phage integrase family protein [Candidatus Desulforudis audaxviator MP104C] gi|169637808|gb|ACA59314.1| phage integrase family protein [Candidatus Desulforudis audaxviator MP104C] Length = 283 Score = 125 bits (313), Expect = 1e-26, Method: Composition-based stats. Identities = 47/264 (17%), Positives = 89/264 (33%), Gaps = 17/264 (6%) Query: 78 YRKSAHWGSLAVNSRISFESYFDQII--------RKSGDFDYRKITTKHIRSGVESRKHT 129 + L+V + ++ + + R + ++ Sbjct: 4 FLDHLKARGLSVQTVGTYAAAVRAFAKWWEGTGGEAFDPASVSSLDVADYRRHLLNKNRK 63 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF-KSFWSE 188 P++ L ++ F WAV I+P V R + R T+ ++ ++ Sbjct: 64 PATVNLHLDALSSFFSWAVSTGLALIDPTEGVRRVPGQKSSPRWLTRRELGALVRAVQKH 123 Query: 189 G-SQPRLAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVELPDGFMK 243 G S+ R LL++GLR S++ VQ ++ +++ K V L K Sbjct: 124 GASRDRALVALLLHAGLRVSEAVSLKVQDAVIRERSGHVAVRRGKGEKYREVPLNATARK 183 Query: 244 LLAM---TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADA 300 ++ G E F + M K A AGV + H +R + DA Sbjct: 184 MIQEWLDGHPGGEYLFPGRNGGPMTPRAVQKRLKELARLAGVEVTPHKLRHTFCKMLVDA 243 Query: 301 GATAHELMATYGWKTVDQAETYTK 324 G + + G ++ YT+ Sbjct: 244 GESLDRVAVLAGHANLNTTARYTR 267 >gi|119385146|ref|YP_916202.1| phage integrase family protein [Paracoccus denitrificans PD1222] gi|119374913|gb|ABL70506.1| phage integrase family protein [Paracoccus denitrificans PD1222] Length = 230 Score = 125 bits (313), Expect = 1e-26, Method: Composition-based stats. Identities = 39/230 (16%), Positives = 78/230 (33%), Gaps = 16/230 (6%) Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER---PKRKTEGIRPWTKEDM 179 ++ H A ++ ++ K +R+ ++ NP +ER PK + + PW + Sbjct: 1 MDKNTHRVRFANYIPVAISMIAKEVIRKRWLTDNPAKGIERLNVPKNRRQPHIPWPDIAV 60 Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ---NNIFSIKTQKTGTIITVE 236 Q++++ G RL FE + S R D ++ K + + Sbjct: 61 QKWRA--EAGPLERLIFEIGVGSVQRPGDWVCFTWGDYDPAGTGTLRLRQSKGDKPLILP 118 Query: 237 LPDGFMKLLAM-------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHG 288 + L +P+ D +M+ + + + + G+ H Sbjct: 119 CTEALKAALDAAKAALPFSPLPSRHIITKQDGSRMDYRRMAEIMLKERRRLGLEAYDLHA 178 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRR 338 +R A AG E+M+ G T Y A +I + + Sbjct: 179 LRYRGVMELAWAGCDDDEIMSYSGHSTKAMVRKYAGEARQIMRARQARAK 228 >gi|28198301|ref|NP_778615.1| phage-related integrase [Xylella fastidiosa Temecula1] gi|182680938|ref|YP_001829098.1| integrase family protein [Xylella fastidiosa M23] gi|28056371|gb|AAO28264.1| phage-related integrase [Xylella fastidiosa Temecula1] gi|182631048|gb|ACB91824.1| integrase family protein [Xylella fastidiosa M23] gi|307579406|gb|ADN63375.1| integrase family protein [Xylella fastidiosa subsp. fastidiosa GB514] Length = 339 Score = 125 bits (313), Expect = 1e-26, Method: Composition-based stats. Identities = 63/333 (18%), Positives = 116/333 (34%), Gaps = 28/333 (8%) Query: 7 LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66 +P F + + + G + YY+ G R P Y A+ + E+ Sbjct: 11 IPRFRVRPQ-KSGVVYYYYDHGGKPRKETPLG------RDYGLAI-KRWAELEHAQITPA 62 Query: 67 KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVE 124 T + + YR + A N++ Y + +++ D + I +IR ++ Sbjct: 63 IAVTFRHVAERYRAEVI-PTKAYNTQRMHHVYLNYLLQFFDDPPAPFESIKPVNIRQYLD 121 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVA-INPCLSVERPKRKTEGIRPWTKEDMQQFK 183 R SA + + L+ WA + NPC + R K + + D ++ Sbjct: 122 WRPFKV-SANREVALFSHLWNWARSKGITDLPNPCGGIRRNKERGRDVYI----DDTTYR 176 Query: 184 SFWSEGSQP-RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242 + + Q R A + +G R SD +H+ N I KTG + + + Sbjct: 177 AVYQAADQTLRDAMDLAYLTGQRVSDVVSMDERHIVNGALEICQAKTGVKLAIAITGELA 236 Query: 243 KLLAMTPIGKE-------TFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKF 292 L+ K ++ +N + + F+ AG+ K +R Sbjct: 237 VLIKRIFDRKRGMKLRSTRLIVDEKGLGLNWKKLAYRFRKVRAAAGIAKEVFQFRDLRAK 296 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKG 325 +AT AD + A G +V E Y + Sbjct: 297 AATDKADLAGDMRQAQAQLGHASVTMTEHYVRK 329 >gi|123440588|ref|YP_001004582.1| site-specific tyrosine recombinase XerC [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122087549|emb|CAL10330.1| putative integrase/recombinase [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 303 Score = 125 bits (313), Expect = 1e-26, Method: Composition-based stats. Identities = 43/259 (16%), Positives = 89/259 (34%), Gaps = 19/259 (7%) Query: 85 GSLAVNSRISFESYFDQIIR---KSGDFDYRKITTKHIRSGVESRKHTP---SSAIQFLT 138 L+ + S+ ++ + G ++ + +RS V K SS L+ Sbjct: 23 RQLSPLTITSYRRQLQALMEMGEQMGLAHWQTLDAAQVRSLVSRSKRAGLHSSSLALRLS 82 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQPRLA 195 ++R W V Q + NP V P+ + +++ + + R Sbjct: 83 ALRSFLNWLVSQGVLQANPAKGVSTPRSGRHLPKNIDVDEVAKLLDIDLNDPLAVRDRAM 142 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI--------ITVELPDGFMKLLAM 247 E + +GLR S+ +H+ + G+ V+ D +++L + Sbjct: 143 LEVMYGAGLRLSELVGMNCKHVDLASGEVWVMGKGSKERKVPIGKTAVKWLDHWLELREL 202 Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAH 305 + F+ N ++++A F K GV + H +R AT ++ Sbjct: 203 FEPQDDAIFLANTGKRISARNVQKRFAEWGVKQGVSSHIHPHKLRHSFATHMLESSGDLR 262 Query: 306 ELMATYGWKTVDQAETYTK 324 + G + + YT Sbjct: 263 AVQELLGHANLTTTQIYTH 281 >gi|145300550|ref|YP_001143391.1| tyrosine recombinase XerC [Aeromonas salmonicida subsp. salmonicida A449] gi|142853322|gb|ABO91643.1| tyrosine recombinase XerC [Aeromonas salmonicida subsp. salmonicida A449] Length = 322 Score = 125 bits (313), Expect = 1e-26, Method: Composition-based stats. Identities = 48/294 (16%), Positives = 102/294 (34%), Gaps = 22/294 (7%) Query: 53 GSTPKREYINSPRKKPTTLKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKS---GD 108 P + + P +L ++ + + L+ ++R ++ES+ + + G Sbjct: 2 AREPAKASAPAAEPLPASLADELAAFIEYLRVERQLSPHTRSNYESHLQAMAAELVRLGV 61 Query: 109 FDYRKITTKHIRSGVESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK 165 D+ ++ +RS V P S ++++R W VRQ + NP + PK Sbjct: 62 SDWARLEASQVRSLVTRMHKAGLAPRSLSTKISALRSFCDWQVRQGRLTANPARGIVTPK 121 Query: 166 RKTEGIRPWTKEDMQQFKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI 221 + + ++M Q + + R E + SGLR ++ + ++ + Sbjct: 122 QGRPLPKNLDVDEMYQLLNITDEQDPLAVRDRAIMELMYSSGLRLAELVGLNLGDIKLDD 181 Query: 222 FSIKTQKTGTIITV---------ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIW 272 +K G+ V L + + F++ KQ+++A Sbjct: 182 RQLKVTGKGSRERVLPMGRMAVEWLHKWLKVRPLLAGDEADALFVSKRKQRLSARSVQER 241 Query: 273 FKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 K +N H +R AT ++ + G + + YT Sbjct: 242 LDGWGNKQALNAHVHPHKLRHSFATHMLESSGDLRAVQELLGHADLSTTQIYTH 295 >gi|77918417|ref|YP_356232.1| site-specific recombinase/integrase [Pelobacter carbinolicus DSM 2380] gi|77544500|gb|ABA88062.1| site-specific recombinase/integrase [Pelobacter carbinolicus DSM 2380] Length = 396 Score = 125 bits (313), Expect = 1e-26, Method: Composition-based stats. Identities = 62/339 (18%), Positives = 118/339 (34%), Gaps = 26/339 (7%) Query: 9 PFVTKERTRHGKIIY--YFRKGHGRRIRLPYPH---ESTFIPAYMSALTGSTPKREYINS 63 P + G + +R ++ P+ E + + + E + S Sbjct: 38 PGLHICVNMRGNKRWLFRYRLYGRKKAVAIGPYPAIEPPLAKQMANEMQRNLALGEPVVS 97 Query: 64 PR---KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120 PR K+ EY + A + + + +QII K G+ +T K I+ Sbjct: 98 PRAQQKQQKAFGEFAREYLEHA--KQTKKSWKDDYNKLTNQIIPKWGEVPLTCLTPKEIQ 155 Query: 121 SGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVA--INPCLSVERPKRKTEGIRPWTK 176 + K ++A + + VL+ AV+ + NP V + + R + Sbjct: 156 GYLNQVKARTSGTNANRHYAVLNVLYNLAVKWGEIDPGKNPMPGVSKFRDNPGRTRYLSM 215 Query: 177 EDMQQFKSFWSE--GSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTI 232 E+ ++F + E G A LL++G R + ++ + + + + K G Sbjct: 216 EECKRFLAALEEVPGQLAACALRLLLFTGCRAGEVLKSKWEDVSMEGRTMLLPETKNGKS 275 Query: 233 ITVELPD----GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--- 285 V L KL A F + + K T F+ AG+ + Sbjct: 276 RVVHLNPLSLAEIEKLKAFRQPNNPYLFPGSSEDKPLGTVRKT-FEHALKLAGLEGTDVV 334 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R A++ A+ G + + + G +V E Y Sbjct: 335 IHTLRHTHASLLANLGESLETIKVSLGHSSVKMTERYAH 373 >gi|32474160|ref|NP_867154.1| integrase/recombinase [Rhodopirellula baltica SH 1] gi|32444697|emb|CAD74699.1| integrase/recombinase [Rhodopirellula baltica SH 1] Length = 325 Score = 125 bits (313), Expect = 1e-26, Method: Composition-based stats. Identities = 46/292 (15%), Positives = 98/292 (33%), Gaps = 23/292 (7%) Query: 56 PKREYINSPRKKPTTLKWLISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKI 114 + + + P+ + + E+ LA N+ ++ + + + Sbjct: 17 QQLKSGQTESVAPSAGQAVCDEFLVYLKRECHLADNTVAAYGRDMKRFVTWMDGRRPADL 76 Query: 115 TT---KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171 T + + P+S + + ++R FK+ + NP + K Sbjct: 77 TITELSDFVASLHGEGLAPASISRAIVAIRTFFKYLQLEGITVDNPAELLATQKAWQRMP 136 Query: 172 RPWTKEDMQQFKSFWSEG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ 227 + +++ F S + + R E L +G R S+ C V+ L + +++ Sbjct: 137 GVLSPNEVEAFLSAVKKSDSFWQRDRALLEVLYATGCRASEVCTLRVRDLTLDEKTLRCH 196 Query: 228 KTGTI-------------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFK 274 G I + L + L P + F++ + ++ Q K Sbjct: 197 GKGDKQRMVPIGGRAIRAIQLYLEESRHILADRNPGQIDELFLSRGGKALDRIQLWRLVK 256 Query: 275 AKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 A +AG+ S H +R AT GA ++ G ++ + YT Sbjct: 257 RYAKRAGISDEISPHSLRHSFATHLLAGGADLRQVQEMLGHASIQTTQIYTH 308 >gi|325954362|ref|YP_004238022.1| Tyrosine recombinase xerC [Weeksella virosa DSM 16922] gi|323436980|gb|ADX67444.1| Tyrosine recombinase xerC [Weeksella virosa DSM 16922] Length = 301 Score = 125 bits (313), Expect = 1e-26, Method: Composition-based stats. Identities = 53/277 (19%), Positives = 101/277 (36%), Gaps = 27/277 (9%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQI-----IRKSGDFDYRKITTKHIRSGVESRKH 128 I + + ++++ ++ D I +S D K HIRS + S Sbjct: 4 IQRFLDYLQYEKRYSLHTIKNYRRDLDDFLSFYQIEESSD-SIEKAEKNHIRSFIISLSD 62 Query: 129 T---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 S + L+S+R + + ++ + +P L ++ K K E I P+T+++MQ+ Sbjct: 63 KNISERSINRKLSSLRTFYIYLIKTGQLTTSPMLQIKSLKTKKEVIIPYTEKEMQRLFEL 122 Query: 186 WSE------GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELP 238 + G + RL +G+R + + + L+ IK K + + Sbjct: 123 ENIFPDDFDGIRDRLMMNLFYQTGIRRGELIQLTLPQLRIEQKEIKVLGKRNKERVLPIG 182 Query: 239 DGFM-KLLAMTPIGKE-------TFFINNDKQKMNATQFSIWFKAKA--TKAGVNKSAHG 288 + + + + KE T FI N+ Q + KS H Sbjct: 183 ENLVSEFTRYLKVRKEVVGSENLTLFIKNNGQALYEKFVYERVNYYLSFITEKHKKSPHV 242 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 +R AT + GA + L G ++ + YT Sbjct: 243 LRHTFATQLLENGADLNALKEILGHSSLSSTQIYTHS 279 >gi|225627919|ref|ZP_03785955.1| phage integrase family site specific recombinase [Brucella ceti str. Cudo] gi|254694153|ref|ZP_05155981.1| phage integrase [Brucella abortus bv. 3 str. Tulya] gi|254702191|ref|ZP_05164019.1| phage integrase [Brucella suis bv. 5 str. 513] gi|254710513|ref|ZP_05172324.1| phage integrase [Brucella pinnipedialis B2/94] gi|254714506|ref|ZP_05176317.1| phage integrase [Brucella ceti M644/93/1] gi|254717404|ref|ZP_05179215.1| phage integrase [Brucella ceti M13/05/1] gi|256032006|ref|ZP_05445620.1| phage integrase [Brucella pinnipedialis M292/94/1] gi|256045098|ref|ZP_05447999.1| phage integrase [Brucella melitensis bv. 1 str. Rev.1] gi|256061527|ref|ZP_05451671.1| phage integrase [Brucella neotomae 5K33] gi|256114028|ref|ZP_05454805.1| phage integrase [Brucella melitensis bv. 3 str. Ether] gi|256160204|ref|ZP_05457898.1| phage integrase [Brucella ceti M490/95/1] gi|256255410|ref|ZP_05460946.1| phage integrase [Brucella ceti B1/94] gi|256369890|ref|YP_003107401.1| site-specific recombinase, phage integrase family [Brucella microti CCM 4915] gi|260169143|ref|ZP_05755954.1| site-specific recombinase, phage integrase family protein [Brucella sp. F5/99] gi|260565302|ref|ZP_05835786.1| phage integrase [Brucella melitensis bv. 1 str. 16M] gi|261214456|ref|ZP_05928737.1| integrase/recombinase [Brucella abortus bv. 3 str. Tulya] gi|261219235|ref|ZP_05933516.1| integrase/recombinase [Brucella ceti M13/05/1] gi|261222614|ref|ZP_05936895.1| integrase/recombinase [Brucella ceti B1/94] gi|261318084|ref|ZP_05957281.1| integrase/recombinase [Brucella pinnipedialis B2/94] gi|261322296|ref|ZP_05961493.1| integrase/recombinase [Brucella ceti M644/93/1] gi|261325538|ref|ZP_05964735.1| integrase/recombinase [Brucella neotomae 5K33] gi|261752763|ref|ZP_05996472.1| integrase/recombinase [Brucella suis bv. 5 str. 513] gi|261758653|ref|ZP_06002362.1| phage integrase [Brucella sp. F5/99] gi|265989118|ref|ZP_06101675.1| integrase/recombinase [Brucella pinnipedialis M292/94/1] gi|265991531|ref|ZP_06104088.1| integrase/recombinase [Brucella melitensis bv. 1 str. Rev.1] gi|265995369|ref|ZP_06107926.1| integrase/recombinase [Brucella melitensis bv. 3 str. Ether] gi|265998579|ref|ZP_06111136.1| integrase/recombinase [Brucella ceti M490/95/1] gi|294852794|ref|ZP_06793467.1| phage integrase [Brucella sp. NVSL 07-0026] gi|225617082|gb|EEH14128.1| phage integrase family site specific recombinase [Brucella ceti str. Cudo] gi|256000053|gb|ACU48452.1| site-specific recombinase, phage integrase family [Brucella microti CCM 4915] gi|260151370|gb|EEW86464.1| phage integrase [Brucella melitensis bv. 1 str. 16M] gi|260916063|gb|EEX82924.1| integrase/recombinase [Brucella abortus bv. 3 str. Tulya] gi|260921198|gb|EEX87851.1| integrase/recombinase [Brucella ceti B1/94] gi|260924324|gb|EEX90892.1| integrase/recombinase [Brucella ceti M13/05/1] gi|261294986|gb|EEX98482.1| integrase/recombinase [Brucella ceti M644/93/1] gi|261297307|gb|EEY00804.1| integrase/recombinase [Brucella pinnipedialis B2/94] gi|261301518|gb|EEY05015.1| integrase/recombinase [Brucella neotomae 5K33] gi|261738637|gb|EEY26633.1| phage integrase [Brucella sp. F5/99] gi|261742516|gb|EEY30442.1| integrase/recombinase [Brucella suis bv. 5 str. 513] gi|262553203|gb|EEZ09037.1| integrase/recombinase [Brucella ceti M490/95/1] gi|262766482|gb|EEZ12271.1| integrase/recombinase [Brucella melitensis bv. 3 str. Ether] gi|263002315|gb|EEZ14890.1| integrase/recombinase [Brucella melitensis bv. 1 str. Rev.1] gi|264661315|gb|EEZ31576.1| integrase/recombinase [Brucella pinnipedialis M292/94/1] gi|294821383|gb|EFG38382.1| phage integrase [Brucella sp. NVSL 07-0026] Length = 164 Score = 125 bits (313), Expect = 1e-26, Method: Composition-based stats. Identities = 33/155 (21%), Positives = 59/155 (38%), Gaps = 14/155 (9%) Query: 205 RCSDSCRAGVQH-------LQN-----NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGK 252 R D L + F ++ KTG + + + ++L TP Sbjct: 9 RRGDIAALRWDQRCSKTVFLDGEAKSVDGFELRQGKTGKRLFLPITPILSEVLEATPRQG 68 Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMAT 310 ET + + + + A + K + HG+RK I A+ GA+ ++M T Sbjct: 69 ETVLVTAYGEPFSPKSLTGRMADWTASAKLPKGFTLHGLRKTLGKILAEGGASTRQIMDT 128 Query: 311 YGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDS 345 G + AE YT+ A++ RL R+ + + Sbjct: 129 LGHDDIAHAELYTREAEQARLATDGMSRVVRLKRN 163 >gi|218131354|ref|ZP_03460158.1| hypothetical protein BACEGG_02969 [Bacteroides eggerthii DSM 20697] gi|217986286|gb|EEC52623.1| hypothetical protein BACEGG_02969 [Bacteroides eggerthii DSM 20697] Length = 294 Score = 125 bits (313), Expect = 1e-26, Method: Composition-based stats. Identities = 47/263 (17%), Positives = 96/263 (36%), Gaps = 23/263 (8%) Query: 85 GSLAVNSRISFESYFDQI----IRKSGDFDYRKITTKHIRSGV---ESRKHTPSSAIQFL 137 + + + +++ ++ GD + IR + R P++ + L Sbjct: 15 RNYSKGTVRYYQADILELQKFGEELLGDLTPSDVDAGLIREWITSLMDRGCAPNTVNRKL 74 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS-----EGSQP 192 +S+R +K+ +R+ VA +P + PK+K + D+ + EG + Sbjct: 75 SSVRSYYKYLLRKGMVAADPLQKITGPKKKKPLPVFLREGDVNRLLDDVDFGEGFEGCRD 134 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLA----- 246 RL E +G+R S+ + + + IK T K + + + Sbjct: 135 RLIIEMFYATGMRLSELIGLDDKDIDFSASLIKVTGKRNKQRLLPFDEELRCSMQEYVNV 194 Query: 247 ---MTPIGKETFFINNDKQKMNATQFSIWFKA--KATKAGVNKSAHGVRKFSATISADAG 301 P+ + FFI +++N + + K +S H +R AT + G Sbjct: 195 RNQALPVRSDAFFIRKTGERLNRSIVAYIVKRNLSKVVTVKKRSPHVLRHTFATAMLNNG 254 Query: 302 ATAHELMATYGWKTVDQAETYTK 324 A + G +++ E YT Sbjct: 255 ADLGSIKELLGHESLATTEVYTH 277 >gi|51594547|ref|YP_068738.1| site-specific tyrosine recombinase XerC [Yersinia pseudotuberculosis IP 32953] gi|186893547|ref|YP_001870659.1| site-specific tyrosine recombinase XerC [Yersinia pseudotuberculosis PB1/+] gi|51587829|emb|CAH19432.1| putative integrase/recombinase [Yersinia pseudotuberculosis IP 32953] gi|186696573|gb|ACC87202.1| tyrosine recombinase XerC [Yersinia pseudotuberculosis PB1/+] Length = 303 Score = 125 bits (313), Expect = 1e-26, Method: Composition-based stats. Identities = 44/259 (16%), Positives = 87/259 (33%), Gaps = 19/259 (7%) Query: 85 GSLAVNSRISFES---YFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQF---LT 138 L+ + S+ +I + G ++ + +RS V K T A L+ Sbjct: 23 RQLSPLTVTSYRRQLSALMEIGEQMGLAHWQTLDAAQVRSLVSRSKRTGLHASSLALRLS 82 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQPRLA 195 ++R W V Q + NP V P+ + +++ + S + R Sbjct: 83 ALRSFLNWLVSQGVLPANPAKGVSTPRSGRHLPKNIDVDEINKLLSIDLNDPLAVRDRAM 142 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI--------ITVELPDGFMKLLAM 247 E + +GLR S+ +H+ + G+ V ++ L + Sbjct: 143 LEVMYGAGLRLSELVGMNCKHVDLASGDVWVMGKGSKERKVPLGKTAVTWLQHWLALREL 202 Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAH 305 + F+ N ++++A F K GV + H +R AT ++ Sbjct: 203 FEPQDDAIFLANTGKRISARNVQKRFAEWGVKQGVSSHIHPHKLRHSFATHMLESSGDLR 262 Query: 306 ELMATYGWKTVDQAETYTK 324 + G + + YT Sbjct: 263 AVQELLGHANLTTTQIYTH 281 >gi|257063755|ref|YP_003143427.1| site-specific recombinase XerD [Slackia heliotrinireducens DSM 20476] gi|256791408|gb|ACV22078.1| site-specific recombinase XerD [Slackia heliotrinireducens DSM 20476] Length = 313 Score = 125 bits (313), Expect = 1e-26, Method: Composition-based stats. Identities = 44/284 (15%), Positives = 101/284 (35%), Gaps = 25/284 (8%) Query: 75 ISEY-RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITT-----KHIRSGVESRKH 128 + +Y + A + + ++ ++ R + + + + ++ Sbjct: 23 VDDYCLEMAQVKNASAHTVRNYRIDLLDFGRWAVRCHVDPMRITYRQVRRYLGELTQAQY 82 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-- 186 + + + L++++ LF+W + +P ++ PK R DM + + + Sbjct: 83 SRKTINRRLSAIKGLFRWMNLTGVIDSDPVSVIQGPKSAKGLPRMIPASDMGRILTVYKD 142 Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFM 242 + + EFL G R S++ + + + +K K + L D + Sbjct: 143 SDDPADMRNQAILEFLYACGARISEASGLMLADVDFDAKQVKVFGKGSKERIIPLHDMAV 202 Query: 243 KLL-----AMTPI-----GKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVR 290 K + P+ E FF++ +M FK AGV+ + H +R Sbjct: 203 KTMKSYAWRARPVLLKGKPNEFFFVSTRGNRMGPDAMRKMFKNTLIMAGVDTSYTPHDMR 262 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGI 333 AT + GA + G +++ + YT D ++ + Sbjct: 263 HTFATDLVEGGADLKSVQEMLGHESLSTTQIYTHLSVDHLKQAV 306 >gi|283787512|ref|YP_003367377.1| tyrosine recombinase [Citrobacter rodentium ICC168] gi|282950966|emb|CBG90643.1| tyrosine recombinase [Citrobacter rodentium ICC168] Length = 298 Score = 125 bits (313), Expect = 1e-26, Method: Composition-based stats. Identities = 39/259 (15%), Positives = 82/259 (31%), Gaps = 19/259 (7%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITT------KHIRSGVESRKHTPSSAIQFLT 138 L+ + +++ D II + + + + P+S L+ Sbjct: 19 RQLSPITLKNYQRQLDAIIALAAEAGLESWQQCDAAMVRSFAVRSRRKGLGPASLALRLS 78 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQPRLA 195 ++R F W V + + NP V PK + +D+ + + R Sbjct: 79 ALRSFFDWIVSEGKLNANPAKGVSAPKAPRHLPKNIDVDDVNRLLDIDLNDPLAVRDRAM 138 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMKLLAMT------ 248 E + +GLR S+ + HL + K + + + + Sbjct: 139 LEVMYGAGLRLSELVGLDINHLDLDTGEVWVMGKGSKERRLPIGRNAVAWIEHWLDLRGL 198 Query: 249 -PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAH 305 + F++ ++++A F K G+N H +R AT ++ Sbjct: 199 FGCEENALFLSKLGKRISARNVQKRFAEWGIKQGLNSHVHPHKLRHSFATHMLESSGDLR 258 Query: 306 ELMATYGWKTVDQAETYTK 324 + G + + YT Sbjct: 259 GVQELLGHANLSTTQIYTH 277 >gi|269795295|ref|YP_003314750.1| tyrosine recombinase XerD [Sanguibacter keddieii DSM 10542] gi|269097480|gb|ACZ21916.1| tyrosine recombinase XerD [Sanguibacter keddieii DSM 10542] Length = 317 Score = 125 bits (313), Expect = 1e-26, Method: Composition-based stats. Identities = 46/272 (16%), Positives = 86/272 (31%), Gaps = 33/272 (12%) Query: 85 GSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGV--------ESRKHTPSSAI 134 + N+ ++ D+ + D +TT + V SA Sbjct: 26 RGRSTNTVAAYRRDLDRYVAYLESLDLALEDVTTTVVEDYVTVVRTGSDGRSALAAGSAA 85 Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS---- 190 + L ++R + V + NP V P + + + D+++ + G Sbjct: 86 RSLAAVRGWHTFCVAEGLAPANPTAGVRPPSQGKRLPKAISTYDVERLLAAAGAGDTVAS 145 Query: 191 -QPRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKT-QKTGTIITVEL--------- 237 + R E L +G R S++ V L + S++ K V + Sbjct: 146 VRNRALLELLYSTGARISEAVTLDVDDLDLTPGLESVRLFGKGSKERVVPVGSFAVEAIQ 205 Query: 238 --PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK----SAHGVRK 291 +L G F+N +++ + A AG++ S H +R Sbjct: 206 AYLVRARPVLMAAGRGTPAVFLNTRGARLSRQSAWQVLRTSAETAGLDGAEHISPHTLRH 265 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYT 323 AT GA + G +V + YT Sbjct: 266 SFATHLLSGGADVRVVQELLGHASVTTTQLYT 297 >gi|259415887|ref|ZP_05739807.1| phage integrase [Silicibacter sp. TrichCH4B] gi|259347326|gb|EEW59103.1| phage integrase [Silicibacter sp. TrichCH4B] Length = 317 Score = 125 bits (313), Expect = 1e-26, Method: Composition-based stats. Identities = 45/301 (14%), Positives = 102/301 (33%), Gaps = 33/301 (10%) Query: 65 RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSG 122 R L+W+ + A A N+ +++ + + ++ I + Sbjct: 2 RAPDDDLQWISTFLDAQAAELGAAHNTLLAYGRDLRNVTAWMAHKGTSFAQMRQSDIEAY 61 Query: 123 V---ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179 + ++ + ++ + L++++ ++++A + + NP L ++ P R+ + + ++ Sbjct: 62 LISCDAEGLSRATRARRLSAIKQIYRFAFEEGWRQDNPALQIKGPGREKSLPKTLDENEV 121 Query: 180 QQFKSFW-------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGT 231 + ++ + E L +G+R S+ V + + + K G Sbjct: 122 DRLLGAARTVGRTEADRLRNTCLMELLYATGMRVSELVSLPVSAARGDPNMLLILGKGGK 181 Query: 232 IITVELPDGFMKLLAMT----------------PIGKETFFINNDKQKMNATQFSIWFKA 275 V L L+ + F + + + +F + K Sbjct: 182 ERMVPLSPPARMALSTWIEVRDAVEDKREGQGHKASRFLFPSRSKEGHLTRHRFYLLIKE 241 Query: 276 KATKAGV---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 A GV + H +R AT GA + A G + E YT D RL Sbjct: 242 LAVAGGVSPEKVTPHTLRHAFATHLLQNGADLRAIQALLGHADIATTEIYTHVLD-ARLA 300 Query: 333 I 333 Sbjct: 301 E 301 >gi|254362734|ref|ZP_04978818.1| site-specific recombinase XerC [Mannheimia haemolytica PHL213] gi|261491877|ref|ZP_05988456.1| site-specific recombinase XerC [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261494653|ref|ZP_05991133.1| site-specific recombinase XerC [Mannheimia haemolytica serotype A2 str. OVINE] gi|153094359|gb|EDN75214.1| site-specific recombinase XerC [Mannheimia haemolytica PHL213] gi|261309618|gb|EEY10841.1| site-specific recombinase XerC [Mannheimia haemolytica serotype A2 str. OVINE] gi|261312532|gb|EEY13656.1| site-specific recombinase XerC [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 303 Score = 125 bits (313), Expect = 1e-26, Method: Composition-based stats. Identities = 39/259 (15%), Positives = 92/259 (35%), Gaps = 19/259 (7%) Query: 85 GSLAVNSRISFESYFDQIIR---KSGDFDYRKITTKHIRSGV---ESRKHTPSSAIQFLT 138 ++ ++ +++ + ++G ++ ++ + +R + + + S L Sbjct: 22 KQVSPHTLSNYQRQLMAVSELFSQAGIENWEEVESSSVRWMLSQSHKQGLSAKSIGLRLV 81 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-SEGSQPR--LA 195 ++R F + ++ ++ NP L V+ PK + E + Q + E S R Sbjct: 82 ALRQWFVYLIKIGRMSANPTLGVKSPKVGKHLPKNIDAEQVGQLLAIESDEPSDIRDIAM 141 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLAMT------ 248 E + SGLR S+ + + + ++ K V + +K L Sbjct: 142 MELMYSSGLRLSELQGLDLGDMDLSAREVRVQGKGSKERIVPIGSQALKALNRWLEMRLQ 201 Query: 249 -PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAH 305 F+N +++ + K + G+ + H +R AT +A Sbjct: 202 FKPQDNAVFLNKRGGRLSHRSIQLAMKKWGERQGLESHLHPHKLRHSFATHMLEASGDLR 261 Query: 306 ELMATYGWKTVDQAETYTK 324 + G ++ + YT Sbjct: 262 AVQELLGHSSLSTTQIYTH 280 >gi|168702641|ref|ZP_02734918.1| integrase/recombinase [Gemmata obscuriglobus UQM 2246] Length = 321 Score = 125 bits (313), Expect = 1e-26, Method: Composition-based stats. Identities = 47/279 (16%), Positives = 91/279 (32%), Gaps = 27/279 (9%) Query: 77 EYRKSAHWGSLAVNSRISFESYFDQ---IIRKSGDFDYRKITTKH---IRSGVESRKHTP 130 +Y +S LA N+ +++ + + + DY T KH + + + Sbjct: 15 DYIQSER--GLAENTLLAYGRDLARYAHWVEQVQLPDYTHPTLKHLAAYVAFLHEEQLAA 72 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 S + L ++++ +++ +E + + P + ++ + G Sbjct: 73 PSIARHLVALKMFYRFLQLEERASATTVNLLSSPNLWERVPQVLPPPAVETLITAPQPGD 132 Query: 191 Q----PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLL 245 + R E L +G R S+ + + + K K V L + L Sbjct: 133 RFHLRDRAMLEVLYATGCRASEVVNLKLNDVYLDSGFCKCVGKGSKQRVVPLNRHAVTAL 192 Query: 246 AM-----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKF 292 G E F + + + K +AG+ K S H +R Sbjct: 193 RAYLGGGVDEGGRPAAGPEVVFTSKTGRPLTRIHLWALVKKYCKRAGLPKTVSPHTLRHS 252 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 AT GA + G ++ + YT DR RL Sbjct: 253 FATHLLSGGADLRTVQELLGHASIATTQIYTH-VDRDRL 290 >gi|291301889|ref|YP_003513167.1| tyrosine recombinase XerD [Stackebrandtia nassauensis DSM 44728] gi|290571109|gb|ADD44074.1| tyrosine recombinase XerD [Stackebrandtia nassauensis DSM 44728] Length = 301 Score = 125 bits (313), Expect = 1e-26, Method: Composition-based stats. Identities = 43/258 (16%), Positives = 86/258 (33%), Gaps = 23/258 (8%) Query: 89 VNSRISFESYFDQIIRKSGDF-------DYRKITTKHIRSGVESRKHTPSSAIQFLTSMR 141 R Y D + D D + + E + S + +++R Sbjct: 25 AAYRRDLGRYLDWLSETGLDALSQVTAADIGGYLARLSQGDDEHPGLSARSIARATSALR 84 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-----SEGSQPRLAF 196 L ++A+ + +P ++ PK + +++ + G + Sbjct: 85 GLHRFALDEGVTDTDPTQALSTPKPALRLPKAIGVDEVARLLEAAAILDNPTGLRDTALV 144 Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------ELPDGFMKLLAM 247 EFL +G R S++ A + L + +++ + G + V L + + Sbjct: 145 EFLYGTGARVSETIGADIDDLDFDAAAVRLRGKGGKVRVVPLGGYAVRALENYLTRARPS 204 Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAG--VNKSAHGVRKFSATISADAGATAH 305 G F+N+ + + + A +AG V+ H +R AT D GA Sbjct: 205 WTPGHPKLFVNSRGKPLTRQGVFFILRGLADRAGMAVDLGPHTLRHSFATHLLDGGADIR 264 Query: 306 ELMATYGWKTVDQAETYT 323 + G V + YT Sbjct: 265 VVQELLGHAAVSTTQIYT 282 >gi|126729514|ref|ZP_01745327.1| tyrosine recombinase XerD [Sagittula stellata E-37] gi|126709633|gb|EBA08686.1| tyrosine recombinase XerD [Sagittula stellata E-37] Length = 311 Score = 125 bits (313), Expect = 1e-26, Method: Composition-based stats. Identities = 42/268 (15%), Positives = 93/268 (34%), Gaps = 33/268 (12%) Query: 90 NSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGV---ESRKHTPSSAIQFLTSMRVLF 144 N+ +++ + D D+ K + S + ++ + ++ + L++++ ++ Sbjct: 25 NTLAAYQRDLTHVADWLTDHALDFATAQKKDVESYLIDCDTLGLSRATRARRLSAIKQIY 84 Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS-----EGSQPRLA--FE 197 ++A + NP + + P R+ + + E + + + E + R A + Sbjct: 85 RFAFEEGLREDNPAVQIAGPGREKRLPKTLSVEQVDRLLDAAANHGRTEADRARNACLMQ 144 Query: 198 FLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET-- 254 L +G+R ++ V + + + K G V L + L ++ Sbjct: 145 VLYATGMRVTELVSLPVSAARGDPRMLLIRGKGGKERMVPLSPPAREALTAWLSARDAAA 204 Query: 255 -------------FFINNDKQ--KMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATI 296 F + + + F + K A +AGV + H +R AT Sbjct: 205 SEAQAATGAVPSPFLFPSHGKAGHLTRHAFYMLIKEFALEAGVPPSEVTPHTLRHAFATH 264 Query: 297 SADAGATAHELMATYGWKTVDQAETYTK 324 GA + G V E YT Sbjct: 265 LLANGADLRAIQTLLGHADVATTEIYTH 292 >gi|189184134|ref|YP_001937919.1| putative integrase [Orientia tsutsugamushi str. Ikeda] gi|189184809|ref|YP_001938594.1| putative integrase [Orientia tsutsugamushi str. Ikeda] gi|189180905|dbj|BAG40685.1| putative integrase [Orientia tsutsugamushi str. Ikeda] gi|189181580|dbj|BAG41360.1| putative integrase [Orientia tsutsugamushi str. Ikeda] Length = 379 Score = 125 bits (313), Expect = 1e-26, Method: Composition-based stats. Identities = 52/282 (18%), Positives = 103/282 (36%), Gaps = 13/282 (4%) Query: 51 LTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD 110 L G K + +TLK + Y L +S+I ++ ++ ++ Sbjct: 78 LKGQIAKGIDPLKTKNA-STLKEVYDLYINH---RKLKDSSKILYKGIMNKYLKNLHYIH 133 Query: 111 YRKITTKHIRSGVE-SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169 I + I ++K SA + L ++ + AV E + NP ++ K + Sbjct: 134 VSNIRKEDIYKIFNNAKKGGKYSANKTLKLIKAILNIAVELELIEKNPANGIKIHKMQAR 193 Query: 170 GIRPWTKEDMQQFKSFWSEGSQPRLAFE--FLLYSGLRCSDSCRAGVQHLQ--NNIFSIK 225 R T E+M +F + E P L + LY+ R ++ ++++ ++ I Sbjct: 194 -DRYITLEEMPRFLAAVEEDKNPYLKYFVYISLYTAARRNNVLSMRWENIRLEEGVWYIP 252 Query: 226 TQKTGTIITVELPDGFMKLLAMTPIGKET--FFINNDKQKMNATQFSIWFKAKATKAGV- 282 K G TV L + ++ L E+ F + + T ++ +K +AG+ Sbjct: 253 ETKNGESQTVPLINLLIEKLKQYSYSSESEWVFPGQRRNSGHLTSINVAWKRVCKRAGLK 312 Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 N H +R+ + A G + + Y Sbjct: 313 NLRIHDLRRTVGSWMAKFGMPIAVISKLLNHNDHQSTKFYIH 354 >gi|158522508|ref|YP_001530378.1| integrase family protein [Desulfococcus oleovorans Hxd3] gi|158511334|gb|ABW68301.1| integrase family protein [Desulfococcus oleovorans Hxd3] Length = 308 Score = 125 bits (313), Expect = 1e-26, Method: Composition-based stats. Identities = 46/279 (16%), Positives = 103/279 (36%), Gaps = 28/279 (10%) Query: 74 LISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFDYRK----------ITTKHIRSG 122 L + +S A + N+ ++ + + + D + I + + Sbjct: 13 LADAFVESLASEKGYSPNTCRAYSADLKEFLAFLSPPDDTEHPVCLDDISVIAIRGYLAF 72 Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 + +K S+ + L+ +R F++ ++ + NP +V PK + + +DM + Sbjct: 73 LHKKKMDKSTVSRKLSVLRSFFRYLEKRGIMTGNPARAVLSPKIGRKIPAFLSVDDMFRL 132 Query: 183 KSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVEL 237 + + + R FE + +G+R S++ H++ + + K V + Sbjct: 133 LDASTGDTLLDLRNRAIFETIYSTGIRVSEAAGLDAAHVETDERVFRVYGKGAKERVVPV 192 Query: 238 PDGFMKLLAM----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KS 285 + +A + + F+N ++ ++ K A + G+ S Sbjct: 193 GKKALASIAAYRTRLFEETGIGVEEGPLFLNKNRGRLTTRSMDRILKQTALRCGLTVSLS 252 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R AT DAGA + G K++ + YT Sbjct: 253 PHALRHSFATHMLDAGADLRTVQEILGHKSLSTTQKYTH 291 >gi|284991421|ref|YP_003409975.1| tyrosine recombinase XerD [Geodermatophilus obscurus DSM 43160] gi|284064666|gb|ADB75604.1| tyrosine recombinase XerD [Geodermatophilus obscurus DSM 43160] Length = 315 Score = 125 bits (313), Expect = 1e-26, Method: Composition-based stats. Identities = 47/280 (16%), Positives = 90/280 (32%), Gaps = 34/280 (12%) Query: 85 GSLAVNSRISFESYFDQ---IIRKSGDFDYRKITTKHIRSGVESRKH--------TPSSA 133 LA N+ S+ + + +G ++ + + + + + +SA Sbjct: 24 RGLAANTISSYRRDLRRYTEFLDAAGVRGLGEVAESDVAGFLAALRQGDDDHPPLSATSA 83 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-----SE 188 + + ++R L ++A+ V + V P + E + Sbjct: 84 ARAVVAVRGLHRFALLDGLVPDDVAHEVRPPSPARRLPKAIPVESVVALIEAAGALEGPR 143 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVEL--------PD 239 G + R E L +G R S++ V L ++ K G V + D Sbjct: 144 GLRDRALLELLYGTGARISEAVGLAVDDLDRGQSVVRLAGKGGKQRIVPVGSYALRAVED 203 Query: 240 GFMKLLAMTPIGKET------FFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRK 291 ++ F+N ++ + A +AG+ S H +R Sbjct: 204 YLVRARPALAAAGRGGVRGGALFLNARGGSLSRQSAWAILRTAAERAGLTAEVSPHTLRH 263 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYT-KGADRIR 330 AT D GA + G +V + YT DR+R Sbjct: 264 SFATHLLDGGADVRVVQELLGHASVTTTQVYTLVTVDRLR 303 >gi|297570024|ref|YP_003691368.1| tyrosine recombinase XerD [Desulfurivibrio alkaliphilus AHT2] gi|296925939|gb|ADH86749.1| tyrosine recombinase XerD [Desulfurivibrio alkaliphilus AHT2] Length = 356 Score = 125 bits (313), Expect = 1e-26, Method: Composition-based stats. Identities = 38/249 (15%), Positives = 90/249 (36%), Gaps = 21/249 (8%) Query: 109 FDYRKITTKHIRSGVES---RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK 165 + +I +H+R+ + + K P S + ++++R F++ ++ + +P ++ PK Sbjct: 104 TEINQIGPEHLRAYLAACRQEKAAPRSTSRRISALRAFFRFLQGEQLLGHDPAALLDLPK 163 Query: 166 RKTEGIRPWTKEDMQQFKSFWSEGS-----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNN 220 + + +++Q + + + + L +G+R S+ + V + Sbjct: 164 IGRALPKVLSSAEVEQLLAPPAPPASILALRNHAMLHLLYATGMRVSELVKLPVAAVNQA 223 Query: 221 IFSIKTQKTGTIITVELPDGFMKLLAM----------TPIGKETFFINNDKQKMNATQFS 270 K V + + +A+ + F+ M +F Sbjct: 224 GHLRILGKGSKERLVPFGEAARQAMAVYITQARPRLLKKRRSDFLFVTGRGTAMTRLRFW 283 Query: 271 IWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 + A + G+ + S H +R AT + GA + G + + YT D Sbjct: 284 QIVRKSARERGIAREISPHVLRHSFATHLLEHGADLRAVQVMLGHADIATTQIYTH-VDT 342 Query: 329 IRLGIKNSR 337 RL + + Sbjct: 343 NRLKAIHRK 351 >gi|163848038|ref|YP_001636082.1| integrase family protein [Chloroflexus aurantiacus J-10-fl] gi|222525926|ref|YP_002570397.1| integrase family protein [Chloroflexus sp. Y-400-fl] gi|163669327|gb|ABY35693.1| integrase family protein [Chloroflexus aurantiacus J-10-fl] gi|222449805|gb|ACM54071.1| integrase family protein [Chloroflexus sp. Y-400-fl] Length = 286 Score = 125 bits (313), Expect = 1e-26, Method: Composition-based stats. Identities = 43/271 (15%), Positives = 101/271 (37%), Gaps = 25/271 (9%) Query: 82 AHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKHTPSSAI---Q 135 A ++ N+ I++ + DQ+ G + + ++ + + V + K + + Sbjct: 13 ADERKMSANTTIAYRTDLDQLCAFLHERGIEHWSDVDSETMMAFVINLKEKRYANSTMAR 72 Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-----WSEGS 190 L +++ F + + + +P ++ P+ R ++ + + EG Sbjct: 73 RLAAIKSFFSFLKERNVIHHDPTDQLDAPRVDRFPPRAISQHQVDELLEVPLQNGTPEGI 132 Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLL---- 245 + + E L +G+R S+ V + + +++ + G T+ L D + L Sbjct: 133 RDKAMLEVLYATGMRVSELVALNVDDVAFDHRTVRCRGRQGRERTIPLSDPALTALEEYL 192 Query: 246 --------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATI 296 P E F+N+ +++ F + K A + G+ + + H +R A Sbjct: 193 DIARPQLARQAPDDPEALFLNHRGKRLTRQGFWLILKTYAEQVGMHDLTPHMLRHSFAAH 252 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGAD 327 G EL G ++ + Y A+ Sbjct: 253 QLRNGVDLRELQERLGHASIATTQMYAHLAE 283 >gi|284006600|emb|CBA71861.1| phage integrase [Arsenophonus nasoniae] Length = 297 Score = 125 bits (313), Expect = 1e-26, Method: Composition-based stats. Identities = 49/271 (18%), Positives = 98/271 (36%), Gaps = 21/271 (7%) Query: 75 ISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDY---RKITTKHIRSGVESRKHTP 130 I ++ + L+ + I+++ ++ + D D ++ T H+R V + Sbjct: 5 IDDFLRYLRVERQLSPVTLINYQRQLAVLVDMAIDMDINDWAQLETSHVRMMVAKCRRQG 64 Query: 131 SSAIQF---LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186 A L+S+R W V Q + NP ++ PK K + +++ Q + Sbjct: 65 LQAASLALRLSSLRSFLDWLVGQGLITANPAKTIRAPKNKRHLPKNIDVDEVNQLLNIDL 124 Query: 187 --SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT--------IITVE 236 + R E + +GLR S+ QHL ++ G+ I VE Sbjct: 125 ADPLSVRDRTMLEVMYGAGLRLSELINLNCQHLDLQSGEVRVMGKGSKERKVPLGRIAVE 184 Query: 237 LPDGFMKLLAMTPIGKETFFIN-NDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFS 293 ++++ E FI+ ++++A F + GV + H +R Sbjct: 185 WLIRWLEMRQQYAKQDEAVFISIQRGKRISARNVQKRFALWGIRQGVRSHIHPHKLRHSF 244 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTK 324 AT ++ + G + + YT Sbjct: 245 ATHILESSGDLRAVQELLGHANLSTTQVYTH 275 >gi|182416388|ref|YP_001821454.1| tyrosine recombinase XerD [Opitutus terrae PB90-1] gi|177843602|gb|ACB77854.1| tyrosine recombinase XerD [Opitutus terrae PB90-1] Length = 317 Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 59/300 (19%), Positives = 106/300 (35%), Gaps = 24/300 (8%) Query: 56 PKREYINSPRKKPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDY 111 R + P I + LA N+ S+ DQ G D+ Sbjct: 3 APRARAQDTSQAPPAFADDIEAFLGYIALERGLAANTVASYRRDLDQAATHLAAQGARDW 62 Query: 112 RKITTKHIRSGVESRKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168 R +T + + S T +S + L+++R L + VR+ + A + + PK Sbjct: 63 RAVTGEQAAGWIHSLSSASYTVASLARKLSALRSLAHFLVRERFRADDFTALLSGPKASR 122 Query: 169 EGIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224 T+E++ + + + G + R E SGLR S+ +Q + + Sbjct: 123 RIPGTLTEEEIARLLAAPTGGDARALRDRALLELFYSSGLRVSELAGLLLQQVDLEHGFL 182 Query: 225 KT-QKTGTIITVELPDGFMKLLAM-TPIGKETF---------FINNDKQKMNATQFSIWF 273 + K V + ++ LA G+ F F+N + ++ + Sbjct: 183 RVFGKGAKERVVPIGGKAIEALATYLTAGRPHFVRSRTGSQLFLNKNGGPLSRVMLWMLV 242 Query: 274 KAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 K A +AG+ K HG+R AT GA + G ++ + YT + L Sbjct: 243 KKYAKRAGLTKNVKPHGLRHSFATHLLSGGADLRAIQEMLGHASISTTQIYTSVESQRLL 302 >gi|114570821|ref|YP_757501.1| phage integrase family protein [Maricaulis maris MCS10] gi|114341283|gb|ABI66563.1| phage integrase family protein [Maricaulis maris MCS10] Length = 321 Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 46/304 (15%), Positives = 104/304 (34%), Gaps = 31/304 (10%) Query: 74 LISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFDYRK---ITTKHIRSGVESRKHT 129 LI + A + N+ ++ + + + +H+ + + + Sbjct: 15 LIELFLDMMAAERGASPNTLDAYRRDLVDVAARLSSRNLEAATTPDLEHVLASMAADGLA 74 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW--- 186 S+A + L++++ +++ + NP + PK+ + T++D+ + Sbjct: 75 ASTAARRLSAIKRFYRFLLSDGVREDNPATPLRAPKQGRPLPKILTEDDVDRLFDAASGL 134 Query: 187 --SEGSQPRLAFEFLLYSGLRCSDSCRAGVQH-LQNNIFSIKTQKTGTIITVELPDGFMK 243 G + R E L GLR ++ + ++ T K G V L + ++ Sbjct: 135 SGPAGLRTRALMELLYAGGLRVTELVSLPLGAFVRAERCIQITGKGGRERLVPLTEAALE 194 Query: 244 LLAMTPIGKETFFI-----------------NNDKQKMNATQFSIWFKAKATKAGVN--- 283 +A + +E + +F+ AG++ Sbjct: 195 AVAAYKVVREAHLPVDRTKSGKAARYLFPSRTAKTGHLTRERFAQILSELTLAAGLDPAK 254 Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD-RIRLGIKNSRRISSV 342 S H +R AT GA + G V + YT D R++ ++++ ++ Sbjct: 255 VSPHVLRHAFATHLLARGADLRSVQILLGHADVSTTQIYTHVLDERLKSLVQSAHPLARR 314 Query: 343 VDSD 346 D D Sbjct: 315 TDDD 318 >gi|271502380|ref|YP_003335406.1| tyrosine recombinase XerC [Dickeya dadantii Ech586] gi|270345935|gb|ACZ78700.1| tyrosine recombinase XerC [Dickeya dadantii Ech586] Length = 302 Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 44/259 (16%), Positives = 87/259 (33%), Gaps = 19/259 (7%) Query: 85 GSLAVNSRISFESYFDQIIR---KSGDFDYRKITTKHIRSGVESRKH---TPSSAIQFLT 138 L+ ++ S+ II SG D+ + +R+ V K +S Q L+ Sbjct: 22 RQLSPLTQRSYAHQLQVIIEMLSASGVTDWSSLDAAGVRAVVARSKRDGLNAASLAQRLS 81 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQPRLA 195 ++R W V + + NP V PK + ++M + + R Sbjct: 82 ALRSFLDWLVGRGELKANPARGVPAPKAGRHLPKNMDVDEMDRLLDIDLNDPLAVRDRAM 141 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI--------ITVELPDGFMKLLAM 247 E + +GLR ++ H+ I G+ V ++ + + Sbjct: 142 LEVMYGAGLRLAELVGLDCGHVNLESGEIWVMGKGSKERKLPVGATAVTWLTHWLAIRDI 201 Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAH 305 + F+++ ++++ F K GVN H +R AT ++ Sbjct: 202 YAPEDDAVFVSSLGRRISMRNVQKRFAEWGVKQGVNSHVHPHKLRHSFATHMLESSGDLR 261 Query: 306 ELMATYGWKTVDQAETYTK 324 + G + + YT Sbjct: 262 AVQELLGHANLSTTQIYTH 280 >gi|254708144|ref|ZP_05169972.1| phage integrase [Brucella pinnipedialis M163/99/10] gi|261315648|ref|ZP_05954845.1| integrase/recombinase [Brucella pinnipedialis M163/99/10] gi|261304674|gb|EEY08171.1| integrase/recombinase [Brucella pinnipedialis M163/99/10] Length = 164 Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 33/155 (21%), Positives = 59/155 (38%), Gaps = 14/155 (9%) Query: 205 RCSDSCRAGVQH-------LQN-----NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGK 252 R D L + F ++ KTG + + + ++L TP Sbjct: 9 RRGDIAALRWDQRCSKTVLLDGEAKSVDGFELRQGKTGKRLFLPITPILSEVLEATPRQG 68 Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMAT 310 ET + + + + A + K + HG+RK I A+ GA+ ++M T Sbjct: 69 ETVLVTAYGEPFSPKSLTGRMADWTASAKLPKGFTLHGLRKTLGKILAEGGASTRQIMDT 128 Query: 311 YGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDS 345 G + AE YT+ A++ RL R+ + + Sbjct: 129 LGHDDIAHAELYTREAEQARLATDGMSRVVRLKRN 163 >gi|47570332|ref|ZP_00240977.1| site-specific recombinase, phage integrase family [Bacillus cereus G9241] gi|47552997|gb|EAL11403.1| site-specific recombinase, phage integrase family [Bacillus cereus G9241] Length = 302 Score = 124 bits (312), Expect = 2e-26, Method: Composition-based stats. Identities = 44/272 (16%), Positives = 96/272 (35%), Gaps = 26/272 (9%) Query: 85 GSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIRSGV---ESRKHTPSSAIQFLT 138 + + + S+++ + + + G + IT +R + K S + ++ Sbjct: 21 RNYSKYTIASYQNDLEHFVQFMEREGISSFLDITYADVRLYLTTLHDEKLARKSVARKVS 80 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRL 194 S+R L+++ +R+ Y NP PK++ + E++++ G + + Sbjct: 81 SLRSLYRFLMREGYRKDNPFALASLPKKELSIPKFLYAEELEELFEVSDTETPLGQRNQA 140 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE------------LPDGF 241 E + +G+R S+ + + + +I K + + +G Sbjct: 141 LLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQRYIPFGSYAQDALITYIENGR 200 Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299 +L T F+N + + KA + S H +R AT D Sbjct: 201 KQLAEKTEEHSHMVFLNAKGTPLTSRGVRYVLNELIKKASLTMRISPHMLRHTFATHMLD 260 Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRL 331 GA + G + + + YT + RL Sbjct: 261 EGADLRTVQELLGHENLSTTQIYTH-VSKERL 291 >gi|325661290|ref|ZP_08149916.1| hypothetical protein HMPREF0490_00649 [Lachnospiraceae bacterium 4_1_37FAA] gi|325472239|gb|EGC75451.1| hypothetical protein HMPREF0490_00649 [Lachnospiraceae bacterium 4_1_37FAA] Length = 302 Score = 124 bits (312), Expect = 2e-26, Method: Composition-based stats. Identities = 46/295 (15%), Positives = 103/295 (34%), Gaps = 30/295 (10%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFE----SYFDQIIRKSGDFDYRKIT---TKHIRSGV 123 L+ ++ E+ L+ + + +F I ++ D KI + + Sbjct: 3 LEDVLEEFIFDCKLRRLSEKTIKGYRNNNLRFFTFIKKEYDIDDLGKIQGNVINAYIAYL 62 Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 S PS + S R +K+ ++YV+ NP V K+ I+ + ++++ Sbjct: 63 TSIGRKPSYINGIIKSFRAFYKYCENEKYVSRNPMNKVNFQKQGKTLIKTFNDKEVRDMV 122 Query: 184 SFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD 239 ++ + +L LL +G+R S+ C + ++ + I+ + + V + Sbjct: 123 RYYGSVRYLDIRDKLIMVMLLDTGIRNSELCGLLISDIRYDHILIRGKGNKERV-VPISP 181 Query: 240 GFMKLLAMTPIGK------------ETFFINNDKQKMNATQFSIWFKAKATKA-----GV 282 K+L + E F++ +K+ + +A + Sbjct: 182 ILNKILIKYKRVRNLYIKDKFAYQIEYLFLSQKGKKLTPETV-ERVVLECAEACKVRKTI 240 Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 S H R + A G + L G ++ + Y + D R+ + Sbjct: 241 RCSPHTCRHYFAQAQLKNGCDLYTLSRLLGHSNINITKIYLQSMDDERVLDMGVK 295 >gi|293604631|ref|ZP_06687033.1| phage integrase family site-specific recombinase [Achromobacter piechaudii ATCC 43553] gi|292816962|gb|EFF76041.1| phage integrase family site-specific recombinase [Achromobacter piechaudii ATCC 43553] Length = 322 Score = 124 bits (312), Expect = 2e-26, Method: Composition-based stats. Identities = 65/344 (18%), Positives = 119/344 (34%), Gaps = 35/344 (10%) Query: 2 TPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYI 61 T LP V ++ HG +Y + G R+I + + Y + T + Sbjct: 5 TKDRHLPACVYEK---HG-AFWYVKGGKWRKI---GSDLHSALTEYARIVAAPTDGMPAL 57 Query: 62 NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121 T +A ++R +E + DF ++ + Sbjct: 58 IDEALPVLT--------------KHVAASTRKQYEYCASMLKEDFADFYPGQVKHGDVVE 103 Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 ++ + A + LT ++++F+WA+ + V NPC+SV+R +T R T+++ + Sbjct: 104 MLDQYADRQALANRMLTVLKLVFQWALDRGRVEANPCVSVKRF-VQTSRDRLVTRDEYTR 162 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241 Q + +G R D + + HL ++ + QKTG + VE Sbjct: 163 VYEACPPWLQ--CVMDLCYLTGQRIGDVLKIELVHLHDDGIYFEQQKTGKRLVVEWTPEL 220 Query: 242 MKL------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSA 294 + L + K + + FK A A V + + H +R S Sbjct: 221 RAVSELAKSLHGEAVQKRFLIGARGGNQRLYSYVWRAFKNAAKAAKVTDVNLHDLRAMSG 280 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRR 338 T + G A G Y + R +L SR+ Sbjct: 281 TAAEAQGIDP---TALLGHSDTRTTRIYLRD-KRPKLVKGPSRK 320 >gi|149184272|ref|ZP_01862590.1| integrase [Erythrobacter sp. SD-21] gi|148831592|gb|EDL50025.1| integrase [Erythrobacter sp. SD-21] Length = 292 Score = 124 bits (312), Expect = 2e-26, Method: Composition-based stats. Identities = 48/274 (17%), Positives = 94/274 (34%), Gaps = 19/274 (6%) Query: 75 ISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133 I ++ A A N+ +++ +Q G+ + + G P++ Sbjct: 4 IDDFLAMLAAERGAARNTLLAYGRDLNQAEELLGEKLAGATPAQLAKLGQGWSSLAPATL 63 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW------- 186 + ++++R F + V + +P ++ RP + + + ++ Sbjct: 64 ARKISALRQFFGFLVDEGEREDDPTYALPRPATRRPLPKILSHAQVEALFGRAEDEAASD 123 Query: 187 -SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL-QNNIFSIKTQKTGTIITVELP----DG 240 + + E L SGLR S+ + + ++ F T K G V + Sbjct: 124 RPQAVRLLAMLELLYGSGLRASELVSLPLSAVPRDEPFLTVTGKGGQARLVPVSTRAKQA 183 Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSATIS 297 + LA+ P G F + + + K A +A + S H +R AT Sbjct: 184 LSRWLALRPTGSNYLFPSRSG-HLTRIRLYQMLKELAVRADLPPEKLSPHVLRHAFATHL 242 Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 + GA L G + + YT D RL Sbjct: 243 LEGGADLRALQTLLGHADIATTQIYTH-VDAARL 275 >gi|294669707|ref|ZP_06734774.1| hypothetical protein NEIELOOT_01608 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291308620|gb|EFE49863.1| hypothetical protein NEIELOOT_01608 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 290 Score = 124 bits (312), Expect = 2e-26, Method: Composition-based stats. Identities = 42/262 (16%), Positives = 94/262 (35%), Gaps = 18/262 (6%) Query: 86 SLAVNSRISFESYFDQI-IRKSGD-FDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVL 143 L+ N+ ++ ++I +R +G D+ + + V S + L++ + Sbjct: 17 RLSANTLAAYRRDLNKIAVRLAGQGEDWLSADGSGLAAVVYHPDEKTRSQARALSACKRF 76 Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRLAFEFL 199 + W + E ++ +P + PK++ ++ ++ + G + + E + Sbjct: 77 YGWLLETEQLSNDPTEYLTAPKQERILPAIVSESQIEMLLAAPDTDSPHGLRDKALLELM 136 Query: 200 LYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFIN 258 SGLR S++ + + + + K G V + + + + Sbjct: 137 YASGLRVSEAVKLTLGEIDLQRGLVVTVGKGGKQRLVPMGEEASYWIERYLAQARPVLLK 196 Query: 259 ND-------KQKMNATQFSIWFK---AKATKAGV-NKSAHGVRKFSATISADAGATAHEL 307 N QK N + + A AG+ + S H +R AT + GA + Sbjct: 197 NARCDELFVGQKRNGISRQLAWMIVDKYAEAAGIRHLSPHSLRHAFATHLVNHGADLRVV 256 Query: 308 MATYGWKTVDQAETYTKGADRI 329 + G + + YT A+ Sbjct: 257 QSLLGHADISTTQIYTHVANER 278 >gi|317124968|ref|YP_004099080.1| tyrosine recombinase XerD subunit [Intrasporangium calvum DSM 43043] gi|315589056|gb|ADU48353.1| tyrosine recombinase XerD subunit [Intrasporangium calvum DSM 43043] Length = 311 Score = 124 bits (312), Expect = 2e-26, Method: Composition-based stats. Identities = 46/268 (17%), Positives = 88/268 (32%), Gaps = 29/268 (10%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE------SRKHTPSSAIQFLT 138 + N+ S+E + + R + R SSA + L Sbjct: 25 KGASDNTLKSYERDLRKYREHLHHRGIERAAAVSERDVTDFLASLRERGLAASSAARTLV 84 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS-----QPR 193 ++R ++ + VA +P +V P + + E +++ + S G + R Sbjct: 85 AVRGFHRFLALEGEVAGDPAGNVAPPTPPSRLPKAIPIEAVERLLAASSVGDTPESLRDR 144 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNI-----FSIKTQKTGTIITVELPDGFMKLLAMT 248 E L G R S++ V L + K V + ++ + Sbjct: 145 ALLEVLYGVGARISEAIDLDVDDLDTGVAGEVGLVRLLGKGSKERIVPVGRFAVEAVDAY 204 Query: 249 PI-----------GKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSAT 295 + G F+N ++++ + A +AG+ + S H +R AT Sbjct: 205 LVRGRPALAQRGQGGPALFLNQRGRRLSRQSAWSVVQRAAERAGLTEHVSPHTLRHSFAT 264 Query: 296 ISADAGATAHELMATYGWKTVDQAETYT 323 D GA + G +V + YT Sbjct: 265 HLLDGGADVRVVQELLGHASVTTTQIYT 292 >gi|42782923|ref|NP_980170.1| site-specific tyrosine recombinase XerC [Bacillus cereus ATCC 10987] gi|42738850|gb|AAS42778.1| site-specific recombinase, phage integrase family [Bacillus cereus ATCC 10987] Length = 299 Score = 124 bits (312), Expect = 2e-26, Method: Composition-based stats. Identities = 44/272 (16%), Positives = 96/272 (35%), Gaps = 26/272 (9%) Query: 85 GSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIRSGV---ESRKHTPSSAIQFLT 138 + + + S+++ + + + G + IT +R + K S + ++ Sbjct: 18 RNYSKYTIASYQNDLEHFVQFMEREGISSFLDITYADVRLYLTTLHDEKLARKSVARKVS 77 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRL 194 S+R L+++ +R+ Y NP PK++ + E++++ G + + Sbjct: 78 SLRSLYRFLMREGYRKDNPFALASLPKKELSIPKFLYAEELEELFKVSDTGTPLGQRNQA 137 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE------------LPDGF 241 E + +G+R S+ + + + +I K + + +G Sbjct: 138 LLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQRYIPFGSYAQDALITYIENGR 197 Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299 +L T F+N + + KA + S H +R AT D Sbjct: 198 KQLAKKTEEQSHMVFLNAKGTPLTSRGVRYVLNELIKKASLTMRISPHMLRHTFATHMLD 257 Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRL 331 GA + G + + + YT + RL Sbjct: 258 EGADLRTVQELLGHENLSTTQIYTH-VSKERL 288 >gi|229086384|ref|ZP_04218560.1| Tyrosine recombinase xerC [Bacillus cereus Rock3-44] gi|228696900|gb|EEL49709.1| Tyrosine recombinase xerC [Bacillus cereus Rock3-44] Length = 302 Score = 124 bits (312), Expect = 2e-26, Method: Composition-based stats. Identities = 42/272 (15%), Positives = 95/272 (34%), Gaps = 26/272 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKSGD------FDYRKITTKHIRSGVESRKHTPSSAIQFLT 138 + + + S+++ + ++ D + + + + K S + ++ Sbjct: 21 RNYSKYTIASYQNDLEHFVQFMEREGISSFLDVTYVDVRLYLTTLHDEKLARKSVARKVS 80 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRL 194 S+R L+++ +R+ Y NP PK++ + E++++ G + + Sbjct: 81 SLRSLYRFLMREGYREDNPFALASLPKKEWSIPKFLYVEELEKLFEVSDVKTPLGQRNQA 140 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVE------------LPDGF 241 E + +G+R S+ + ++ +I T K + + +G Sbjct: 141 LLELMYATGIRVSECVSLQFTDIDFSVGTILVTGKGKKQRYIPFGSYAQDALTTYIENGR 200 Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISAD 299 +L T + F+N + KA + S H +R AT D Sbjct: 201 KQLAKKTEEHSQMVFLNAKGAPLTDRGVRYILNDLIKKASLTMKISPHMLRHTFATHMLD 260 Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRL 331 GA + G + + + YT + RL Sbjct: 261 EGADLRTVQELLGHENLSTTQIYTH-VSKERL 291 >gi|311281510|ref|YP_003943741.1| tyrosine recombinase XerC [Enterobacter cloacae SCF1] gi|308750705|gb|ADO50457.1| tyrosine recombinase XerC [Enterobacter cloacae SCF1] Length = 300 Score = 124 bits (312), Expect = 2e-26, Method: Composition-based stats. Identities = 42/274 (15%), Positives = 92/274 (33%), Gaps = 20/274 (7%) Query: 71 LKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV------ 123 L + + + L+ + +++ D I+ +G+ Sbjct: 6 LSAAVERFLRYLGVERQLSPITLLNYRRQLDAIMTLAGESGVASWQQCDAAVIRSWAVRS 65 Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 + P+S L+++R F W V Q ++ NP +V PK + +D+ + Sbjct: 66 RRKGLGPASLALRLSALRSFFDWLVSQGELSANPAKAVSAPKAPRHLPKNIDVDDVNRLL 125 Query: 184 SFW---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT--------I 232 + R E + +GLR S+ ++HL + G+ Sbjct: 126 DIDLNDPLAVRDRAMLEVMYGAGLRLSELVNLDLRHLSLESGEVWVMGKGSKERRLPIGR 185 Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVR 290 V+ + ++ L + + F++ ++++ F K G+N H +R Sbjct: 186 SAVQWVEHWLDLRGLFGAEDDALFLSKLGKRISTRNVQKRFAEWGIKQGLNSHVNPHKLR 245 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK 324 AT ++ + G + + YT Sbjct: 246 HSFATHMLESSGDLRGVQELLGHANLSTTQIYTH 279 >gi|260892612|ref|YP_003238709.1| integrase family protein [Ammonifex degensii KC4] gi|260864753|gb|ACX51859.1| integrase family protein [Ammonifex degensii KC4] Length = 285 Score = 124 bits (312), Expect = 2e-26, Method: Composition-based stats. Identities = 47/268 (17%), Positives = 101/268 (37%), Gaps = 15/268 (5%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITT---KHIRSGVESRK 127 L+ ++ +R+S L+ + + + + G D ++T R ++ + Sbjct: 3 LEEVLKAFRQSCLSRGLSPGTAEVYLGHVRRFFGWLGCADITEVTPFDVASYRRHLQEKG 62 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF-KSFW 186 P++ L ++ F WA V+ +P V + R K ++ +F ++ Sbjct: 63 RKPATVNNALNALSSFFSWAKEAGLVSSDPTEGVRQVPEDRPAPRWLGKRELGRFLRAVQ 122 Query: 187 SEGS-QPRLAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVELP--- 238 GS + R LL++GLR S++ ++ + ++ ++ K G V L Sbjct: 123 KHGSPRDRALVALLLHAGLRVSEAVSLRLEDVVIRERSGFVRVR-GKGGKYREVPLNVTV 181 Query: 239 -DGFMKLLAMTPIGKETF-FINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATI 296 + LA P + + F + + F + +GV + H +R Sbjct: 182 RRVLKEYLAELPPQEGGWLFPGKGGEYLTRFAVEKLFARLSRLSGVEVTPHRLRHTFCKW 241 Query: 297 SADAGATAHELMATYGWKTVDQAETYTK 324 DAG + ++ G ++ YT+ Sbjct: 242 LIDAGESLDKVALLAGHSNLNTTARYTR 269 >gi|332139609|ref|YP_004425347.1| tyrosine recombinase [Alteromonas macleodii str. 'Deep ecotype'] gi|327549631|gb|AEA96349.1| tyrosine recombinase [Alteromonas macleodii str. 'Deep ecotype'] Length = 306 Score = 124 bits (312), Expect = 2e-26, Method: Composition-based stats. Identities = 45/262 (17%), Positives = 100/262 (38%), Gaps = 23/262 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK---HTPSSAIQFLTSMR 141 L++++ +++ ++ + G +++ +T I+ + K H+P S L+++R Sbjct: 26 RGLSLHTIKNYKRQLTEVAKLLGLYEWSGLTPSDIKRVMADAKMSGHSPRSIALRLSALR 85 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS------EGSQPR-- 193 ++ + + + NP ++ PK+ + + ++MQQ + EG Q R Sbjct: 86 TFCQYLIEHQQLFSNPVEGIQAPKQGKPLPKQLSVDEMQQLLNASPQSSDEDEGMQLRDV 145 Query: 194 LAFEFLLYSGLRCSDSCRAGVQH-LQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGK 252 FE L GLR S+ + L++ + K + L K L + Sbjct: 146 AMFELLYGCGLRLSELTGLNLADCLKDGTVKVM-GKGSKQRILPLGRHAQKALNAWLKVR 204 Query: 253 ETF--------FINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGA 302 + F++ K +++ Q + A + + S H +R AT ++ Sbjct: 205 PAYASPYESAVFVSKRKTRISNRQVANRLDKMAKEHSLSQKVSPHKLRHSFATHVLESSG 264 Query: 303 TAHELMATYGWKTVDQAETYTK 324 + G + + YT Sbjct: 265 DLRAVQELLGHANLSTTQVYTH 286 >gi|29840081|ref|NP_829187.1| site-specific tyrosine recombinase XerC [Chlamydophila caviae GPIC] gi|75539745|sp|Q823T9|XERC_CHLCV RecName: Full=Tyrosine recombinase xerC gi|29834429|gb|AAP05065.1| site-specific recombinase, phage integrase family [Chlamydophila caviae GPIC] Length = 312 Score = 124 bits (312), Expect = 2e-26, Method: Composition-based stats. Identities = 45/284 (15%), Positives = 100/284 (35%), Gaps = 31/284 (10%) Query: 66 KKPTTLKWLISEYRKSAHW----GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR- 120 P TL+ + + G L+ +S I + +++ + + T +R Sbjct: 18 ASPHTLRNYCIDLNSFKSFLEKQGELSPSSPI---CLLTKERKET-ELPFSLFTKDSVRL 73 Query: 121 ---SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177 ++ K + + L++++ ++ ++ + +P ++ P+ E P T E Sbjct: 74 YVLELMQENKAK-RTIKRRLSAIKSFSQYCIKNRIIFEDPTETIHGPRLPKELPSPITYE 132 Query: 178 DMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRA-GVQ-HLQNNIFSIKTQKTGT 231 ++ + G + R E SGLR S+ +N+ I+ K Sbjct: 133 QVEILMATPDLSKYTGFRDRCLLELFYSSGLRISEIVAINHWDIDFNSNLIRIR-GKGKK 191 Query: 232 IITVELPD----GFMKLLAMTPIGK-----ETFFINNDKQKMNATQFSIWFKAKATKAGV 282 V + + L + FF+N +++ F+ ++G+ Sbjct: 192 ERLVPMTPHAAQWLQQYLHHPERAHVEQDPQAFFLNRFGKRLTTRSIDRKFQKYLRQSGL 251 Query: 283 NKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 + S H +R AT + G + A G +++ YT Sbjct: 252 SGSITPHTIRHTIATHWLENGMDLKTIQALLGHSSLETTTIYTH 295 >gi|225175744|ref|ZP_03729737.1| integrase family protein [Dethiobacter alkaliphilus AHT 1] gi|225168668|gb|EEG77469.1| integrase family protein [Dethiobacter alkaliphilus AHT 1] Length = 300 Score = 124 bits (312), Expect = 2e-26, Method: Composition-based stats. Identities = 47/277 (16%), Positives = 93/277 (33%), Gaps = 27/277 (9%) Query: 85 GSLAVNSRISFESYFD-----QIIRKSGD-FDYRKITTKHIRSGV----ESRKHTPSSAI 134 L+ + + + + ++ TKH+R + + R + + Sbjct: 20 RGLSDGTVEGYRRDLNIFTQLMVREFFPQGMILDQLETKHVRRFLVYLKKERSNDAGTRN 79 Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQFKSFWSEGS 190 + L S+R F + Q YV NP ++ K TK++ + + Sbjct: 80 RKLASLRSYFSFLEIQGYVESNPVQQLKNVKTAKLLPVFLTKDESDRLINAARMHNKPPY 139 Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQKTGTIITVELPD----GFMKL 244 + LL +G R + + +L++ I K + L D + Sbjct: 140 RDYAMMRVLLQTGCRLDEMVSLNLDSLNLEDRYMRII-GKGNKERMIPLTDKTCAALAEY 198 Query: 245 LA-MTPIGK--ETFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKFSATISA 298 LA P K + F+N ++++ + F +AG+NK + H +R T+ Sbjct: 199 LAGRLPEDKNEQAVFLNQRGRRISHRGVQLIFNQTCKEAGLNKERLTVHKLRHTCFTMLL 258 Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335 +AG + G + + E Y R Sbjct: 259 NAGVDLPTIKDIAGHENISSTEIYVHVTQREIRSAMA 295 >gi|329119991|ref|ZP_08248663.1| tyrosine recombinase XerD [Neisseria bacilliformis ATCC BAA-1200] gi|327463904|gb|EGF10218.1| tyrosine recombinase XerD [Neisseria bacilliformis ATCC BAA-1200] Length = 290 Score = 124 bits (312), Expect = 2e-26, Method: Composition-based stats. Identities = 41/259 (15%), Positives = 94/259 (36%), Gaps = 18/259 (6%) Query: 86 SLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVL 143 L+ N+ ++ ++ + + + + + + V + +P S + L++ + L Sbjct: 17 RLSANTLAAYRRDLEKTAARLSEQGKGWLDAQSGDLAAAVYRAEASPRSQARALSACKRL 76 Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAFEFL 199 + W + A +P + PK++ + + + G + + E + Sbjct: 77 YGWLLDTGQTAADPTEHLRSPKQEKTLPPVIGEAQIDALLAAPDADTPHGLRDKALLELM 136 Query: 200 LYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGKET---- 254 +GLR S++ R + + T K G V + + + L Sbjct: 137 YATGLRVSEAVRLRQDEAKLQAGFVSTIGKGGKQRIVPMGEEAVYWLERYLAQARPQLLK 196 Query: 255 ------FFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHEL 307 F++ + ++ + + A AG+ + S HG+R AT + GA + Sbjct: 197 NARCDEIFVSQKRVGISRQLAWMIVEKHAAAAGIRHLSPHGLRHAFATHLVNHGADLRVV 256 Query: 308 MATYGWKTVDQAETYTKGA 326 G ++ E YT+ A Sbjct: 257 QELLGHASISTTEIYTRVA 275 >gi|261416671|ref|YP_003250354.1| integrase family protein [Fibrobacter succinogenes subsp. succinogenes S85] gi|261373127|gb|ACX75872.1| integrase family protein [Fibrobacter succinogenes subsp. succinogenes S85] gi|302327068|gb|ADL26269.1| site-specific recombinase, phage integrase family [Fibrobacter succinogenes subsp. succinogenes S85] Length = 298 Score = 124 bits (312), Expect = 2e-26, Method: Composition-based stats. Identities = 52/280 (18%), Positives = 99/280 (35%), Gaps = 27/280 (9%) Query: 78 YRKSAHWGSLAVNS----RISFESYFDQIIRKSGDFDYRKITTKHIRSGVE-SRKHTPSS 132 Y ++ + + R S E Y I + + ++ K ++ +K P+S Sbjct: 13 YLQTQR--RYSERTVITYRKSLEKYLATINENAPLEAFSEMNVKAFVWDLKIKQKLAPTS 70 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM--QQFKSFWSEGS 190 + L +++ K+ VR + + NP +V PKR + ++D+ ++F + Sbjct: 71 ICEHLAALKSFGKYLVRSKILQKNPAEAVPMPKRPKRLVSFLGQKDLAEEKFPELPENPT 130 Query: 191 ----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLL 245 + RL E + SGLR S+ LQ ++ K V + D + L Sbjct: 131 LPQVRARLLLELIYGSGLRISECQSLCWNQLQIKERLVRVIGKGNKERIVPITDTLISWL 190 Query: 246 AM----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFS 293 TP F++ + + + G S H +R Sbjct: 191 EKFRAVEIEAGHTPTITSYVFLSENGKPYDIRTLRNDIHNLLRDIGWEGKASPHVLRHSF 250 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLG 332 AT + GA + G + + YT A+R++ Sbjct: 251 ATHLLENGAEIMSVKEMLGHSNISTTQIYTHVNAERLKQA 290 >gi|269121304|ref|YP_003309481.1| integrase family protein [Sebaldella termitidis ATCC 33386] gi|268615182|gb|ACZ09550.1| integrase family protein [Sebaldella termitidis ATCC 33386] Length = 304 Score = 124 bits (312), Expect = 2e-26, Method: Composition-based stats. Identities = 42/283 (14%), Positives = 96/283 (33%), Gaps = 30/283 (10%) Query: 88 AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT--PSSAIQFLTSMRVLFK 145 + N+ S++ + + +++ I + + V+ T ++ ++ + S+R +K Sbjct: 21 SENTLSSYKRDLNLFFSEVP-KNFQSIEDEEVIEYVDKLSKTVKRNTVLRKIASIRAFYK 79 Query: 146 WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---WSEGSQPRLAFEFLLYS 202 + +Y+ NP S++ KR+ + +++ EG + ++ + L+ + Sbjct: 80 FCYINKYITDNPTESLKNLKREFKLPEVLKLSEIKDIIDAIPNTPEGVRDKIIIKILVAT 139 Query: 203 GLRCSDSCRAGVQHLQNNIFSIKT--QKTGTIITVELPDGFMKLLAMTPIGKETFFINND 260 G R S+ ++ ++N + K + + + + + Sbjct: 140 GARISEVLTLDIKDVENQDYEFIRVLGKGSKYRLIPIYSQLEEEIKAYIENDRKILVLER 199 Query: 261 KQ--------------------KMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISA 298 K+ F K A A + K+ H R AT+ Sbjct: 200 KEKESENKNKKKGHELEYKLFLGTRRENFWKRLKKYAKNAKIEKNVYPHIFRHSVATMLI 259 Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341 + GA + G + E YT R I N +I Sbjct: 260 NNGADIRIVQEILGHVNISTTEIYTHVGKRELKEIYNKVKIGD 302 >gi|49478402|ref|YP_037892.1| site-specific tyrosine recombinase XerC [Bacillus thuringiensis serovar konkukian str. 97-27] gi|196042353|ref|ZP_03109624.1| tyrosine recombinase XerC [Bacillus cereus NVH0597-99] gi|218904959|ref|YP_002452793.1| tyrosine recombinase XerC [Bacillus cereus AH820] gi|225865812|ref|YP_002751190.1| tyrosine recombinase XerC [Bacillus cereus 03BB102] gi|228916468|ref|ZP_04080034.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228928879|ref|ZP_04091911.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228935145|ref|ZP_04097972.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228947550|ref|ZP_04109840.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229123345|ref|ZP_04252549.1| Tyrosine recombinase xerC [Bacillus cereus 95/8201] gi|229157407|ref|ZP_04285485.1| Tyrosine recombinase xerC [Bacillus cereus ATCC 4342] gi|254721983|ref|ZP_05183772.1| site-specific tyrosine recombinase XerC [Bacillus anthracis str. A1055] gi|301055321|ref|YP_003793532.1| tyrosine recombinase [Bacillus anthracis CI] gi|49329958|gb|AAT60604.1| site-specific integrase/recombinase [Bacillus thuringiensis serovar konkukian str. 97-27] gi|196026809|gb|EDX65445.1| tyrosine recombinase XerC [Bacillus cereus NVH0597-99] gi|218540108|gb|ACK92506.1| tyrosine recombinase XerC [Bacillus cereus AH820] gi|225791021|gb|ACO31238.1| tyrosine recombinase XerC [Bacillus cereus 03BB102] gi|228626134|gb|EEK82883.1| Tyrosine recombinase xerC [Bacillus cereus ATCC 4342] gi|228660121|gb|EEL15757.1| Tyrosine recombinase xerC [Bacillus cereus 95/8201] gi|228812070|gb|EEM58401.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228824510|gb|EEM70315.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228830686|gb|EEM76291.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228843047|gb|EEM88129.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|300377490|gb|ADK06394.1| tyrosine recombinase [Bacillus cereus biovar anthracis str. CI] Length = 299 Score = 124 bits (312), Expect = 2e-26, Method: Composition-based stats. Identities = 44/272 (16%), Positives = 96/272 (35%), Gaps = 26/272 (9%) Query: 85 GSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIRSGV---ESRKHTPSSAIQFLT 138 + + + S+++ + + + G + IT +R + K S + ++ Sbjct: 18 RNYSKYTIASYQNDLEHFVQFMEREGISSFLDITYADVRLYLTTLHDEKLARKSVARKVS 77 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRL 194 S+R L+++ +R+ Y NP PK++ + E++++ G + + Sbjct: 78 SLRSLYRFLMREGYRKDNPFALASLPKKELSIPKFLYAEELEELFEVSDTETPLGQRNQA 137 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE------------LPDGF 241 E + +G+R S+ + + + +I K + + +G Sbjct: 138 LLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQRYIPFGSYAQDALITYIENGR 197 Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299 +L T F+N + + KA + S H +R AT D Sbjct: 198 KQLAEKTEEQSHMVFLNAKGTPLTSRGVRYVLNELIKKASLTMRISPHMLRHTFATHMLD 257 Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRL 331 GA + G + + + YT + RL Sbjct: 258 EGADLRTVQELLGHENLSTTQIYTH-VSKERL 288 >gi|225023328|ref|ZP_03712520.1| hypothetical protein EIKCOROL_00181 [Eikenella corrodens ATCC 23834] gi|224943973|gb|EEG25182.1| hypothetical protein EIKCOROL_00181 [Eikenella corrodens ATCC 23834] Length = 355 Score = 124 bits (312), Expect = 2e-26, Method: Composition-based stats. Identities = 62/342 (18%), Positives = 123/342 (35%), Gaps = 25/342 (7%) Query: 1 MTPSLR-LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKRE 59 M ++R LP + +++T GK+ +Y+ R LP S F A + Sbjct: 1 MKQAIRNLPMRMRQKKTSSGKVYFYYDTCAKPRKWLPL--GSDFFEALRKYADYEQEYSQ 58 Query: 60 YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS-GD--FDYRKITT 116 + + ++ T + + Y ++ +L+ ++ + + GD +I + Sbjct: 59 ELTARIEREATFRVVAERYVRTV-LPTLSPRTQSDYLYQLKFLYEYFDGDNPAPINQILS 117 Query: 117 KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYV-AINPCLSVERPKRKTEGIRPWT 175 I +E R+ A + + V+F WA + Y NPC V + ++T T Sbjct: 118 VDIYEYLEWRQAAKIRANREIALFSVIFNWARKWGYTNNENPCRGVNK-YQETGRHVYIT 176 Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235 E + Q L + G R +D + +++ I+ K T + + Sbjct: 177 DEQYWRLYECAERHLQ--LLMLVAYFIGQRVADCLKIRTTDIKDGELWIEQNKVQTKVRI 234 Query: 236 ELPDGFMKLLAMTPI-----GKETFFIN-----NDKQKMNATQFSIWFKAKATKAGVNKS 285 +L ++L + + F++ + Q M KAG+ K+ Sbjct: 235 KLTGELAEVLDLILRERGEQKHDYLFVSLGRQRHRGQPMTYAMLRGAMDRAREKAGIEKA 294 Query: 286 A---HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 A +R +AT + DA G T + + Y + Sbjct: 295 AFQFRDLRAKAATDTDDA-VGIEAARVLLGHTTQNMTKRYIR 335 >gi|85702955|ref|ZP_01034059.1| tyrosine recombinase XerD [Roseovarius sp. 217] gi|85671883|gb|EAQ26740.1| tyrosine recombinase XerD [Roseovarius sp. 217] Length = 323 Score = 124 bits (312), Expect = 2e-26, Method: Composition-based stats. Identities = 41/269 (15%), Positives = 90/269 (33%), Gaps = 32/269 (11%) Query: 88 AVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGV---ESRKHTPSSAIQFLTSMRV 142 A N+ +++ K + + I S + +++ P++ + L+++R Sbjct: 22 AKNTLMAYARDLRDFTDWVKYQNLSLDNLMQPDIESYLVQCDAQGLAPATRARRLSAIRQ 81 Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG-------SQPRLA 195 L+++A + A NP + ++ P + + T++++ + + + Sbjct: 82 LYRFAFEERLRADNPAIRIKGPGKAQRLPKTLTEDEVGRLLEVAPQHGRTATERCRNACL 141 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFMKLL--------- 245 L +G+R S+ + + + + K G V L L Sbjct: 142 MALLYATGMRVSELVSLPLAAARGDPQMLLVRGKGGKERMVPLSPPARTALVDWLALRDA 201 Query: 246 ----AMTPIGKETFFINNDKQK---MNATQFSIWFKAKATKAGVN---KSAHGVRKFSAT 295 + + F+ + +F K A KA V+ + H +R AT Sbjct: 202 EETARRSKGLAPSPFLFASGGTAGYLTRHRFYNLIKEFAVKAHVDPEKVTPHTLRHAFAT 261 Query: 296 ISADAGATAHELMATYGWKTVDQAETYTK 324 GA + G + E YT Sbjct: 262 HLLANGADLRVIQTLLGHADIATTEIYTH 290 >gi|71898993|ref|ZP_00681159.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella fastidiosa Ann-1] gi|71731239|gb|EAO33304.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella fastidiosa Ann-1] Length = 339 Score = 124 bits (312), Expect = 2e-26, Method: Composition-based stats. Identities = 63/333 (18%), Positives = 116/333 (34%), Gaps = 28/333 (8%) Query: 7 LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66 +P F + + + G + YY+ G R P Y A+ + E+ Sbjct: 11 IPRFRVRPQ-KSGVVYYYYDHGGKPRKETPLG------RDYGLAI-KRWAELEHAQITPA 62 Query: 67 KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVE 124 T + + YR + A N++ Y + +++ D + I +IR ++ Sbjct: 63 IAVTFRHVAERYRAEVI-PTKAYNTQRMHHVYLNYLLQFFDDPPAPFESIKPVNIRQYLD 121 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVA-INPCLSVERPKRKTEGIRPWTKEDMQQFK 183 R SA + + L+ WA + NPC + R K + + D ++ Sbjct: 122 WRPFKV-SANREVALFSHLWNWARSKGITDLPNPCGGIRRNKERGRDVYI----DDTTYR 176 Query: 184 SFWSEGSQP-RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242 + + Q R A + +G R SD +H+ N I KTG + + + Sbjct: 177 AVYQAADQTLRDAMDLAYLTGQRVSDVVSMDERHIVNGALEICQAKTGVKLAIAITGELS 236 Query: 243 KLLAMTPIGKE-------TFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKF 292 L+ K ++ +N + + F+ AG+ K +R Sbjct: 237 VLIKRIFDRKRGMKLRSTRLIVDEKGLGLNWKKLAYRFRKVRAAAGIAKEVFQFRDLRAK 296 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKG 325 +AT AD + A G +V E Y + Sbjct: 297 AATDKADLAGDMRQAQAQLGHASVTMTEHYVRK 329 >gi|327395064|dbj|BAK12486.1| tyrosine recombinase XerD [Pantoea ananatis AJ13355] Length = 220 Score = 124 bits (312), Expect = 2e-26, Method: Composition-based stats. Identities = 43/211 (20%), Positives = 78/211 (36%), Gaps = 19/211 (9%) Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRLA 195 MR LF++ R++ +P + PK + ++ + + + + Sbjct: 1 MRRLFQYLYREKMRTDDPSAMLAAPKLPQRLPKDLSEAQVDRLLQAPDVNVPLELRDKAM 60 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVEL-------PDGFMKLLAM 247 E L +GLR S+ + + ++ K V L + +M+ Sbjct: 61 LELLYATGLRVSELVGLTLNDVSLRQGVVRVIGKGNKERLVPLGEEAVHWLEYYMEHGRP 120 Query: 248 TPIGKET---FFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAG 301 + +T FF +N Q+M F K A AG++ S H +R AT + G Sbjct: 121 WLLNGQTLDVFFPSNRAQQMTRQTFWHRIKHYAMLAGIDSEKLSPHVLRHAFATHLLNHG 180 Query: 302 ATAHELMATYGWKTVDQAETYTKGA-DRIRL 331 A + G + + YT A +R+RL Sbjct: 181 ADLRVVQMLLGHSDLSTTQIYTHVATERLRL 211 >gi|311108190|ref|YP_003981043.1| tyrosine recombinase XerD [Achromobacter xylosoxidans A8] gi|310762879|gb|ADP18328.1| tyrosine recombinase XerD [Achromobacter xylosoxidans A8] Length = 327 Score = 124 bits (312), Expect = 2e-26, Method: Composition-based stats. Identities = 49/297 (16%), Positives = 91/297 (30%), Gaps = 46/297 (15%) Query: 86 SLAVNSRISFESYF--------------DQIIRKSGD------------FDYRKITTKHI 119 L+ N+ ++ ++ + GD R I Sbjct: 26 GLSANTLAAYRRDLTGFARWLEDPEAYAREMADRHGDAAQAHALPAGPAKPLRDAGKADI 85 Query: 120 RSGVESRKH--TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177 + R ++A + L ++R + WA+R+ +PCL++ K+ + +++ Sbjct: 86 EAWFAFRHEETRATTANRRLAALRRFYAWALREHRAERDPCLTLIAAKQPPRMPKTLSEQ 145 Query: 178 DMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT--QKTGT 231 + G + R E L +GLR S+ + N ++ K G Sbjct: 146 QVDALLRAPDLGQARGLRDRAMLETLYATGLRVSELVGVRALDVSLNEGVVRVVLGKGGK 205 Query: 232 IITVELPDGFMKLLA----------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281 V L + + FI + M+ F K A A Sbjct: 206 DRLVPLGAEAAHWIDLYLKSGRPELAAGRVSDALFITGRAEAMSRQAFWQLVKKYALLAD 265 Query: 282 V--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336 V S H +R AT + GA + G + + YT A + + Sbjct: 266 VRAPLSPHVLRHAFATHLLNHGADLRVVQMLLGHADISTTQIYTHVARERLKALHAA 322 >gi|56476505|ref|YP_158094.1| integrase/recombinase [Aromatoleum aromaticum EbN1] gi|58616507|ref|YP_195636.1| integrase [Azoarcus sp. EbN1] gi|56312548|emb|CAI07193.1| integrase/recombinase [Aromatoleum aromaticum EbN1] gi|56315969|emb|CAI10612.1| probable integrase [Aromatoleum aromaticum EbN1] Length = 309 Score = 124 bits (312), Expect = 2e-26, Method: Composition-based stats. Identities = 44/265 (16%), Positives = 98/265 (36%), Gaps = 18/265 (6%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHT 129 L + +LA N++ ++ R D ++ + +R+ ++RK T Sbjct: 21 LRQRMLEDMGVRNLAPNTQSAYLKQVSAYARYF-DCSPDELGPEQVRAYQVYLTQTRKLT 79 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 PS+ ++R L+K +++ + + PKR + ++E++ QF + Sbjct: 80 PSTVSVATGALRFLYKVTLKRAWA----VEEIPMPKRSFKLPVVLSREEVSQFLASVD-H 134 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLLAM 247 R +GLR S++ V + + ++ K V L ++ L + Sbjct: 135 LMHRTILMTAYAAGLRVSEATHLKVSDIDSQRMVLRVDQGKGRKDRYVMLSPRLLEALRV 194 Query: 248 -TPIGKETFFI---NNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAG 301 + T ++ + Q + + + G+ K + H +R AT ++G Sbjct: 195 YWKSARPTLWLFPGDVPGQPITRNAVGLACQKARRACGIRKPITPHSLRHAFATHLLESG 254 Query: 302 ATAHELMATYGWKTVDQAETYTKGA 326 + G +++ Y K A Sbjct: 255 TDVRTIQLLLGHRSLATTSRYLKVA 279 >gi|167630281|ref|YP_001680780.1| tyrosine recombinase xerc, putative [Heliobacterium modesticaldum Ice1] gi|167593021|gb|ABZ84769.1| tyrosine recombinase xerc, putative [Heliobacterium modesticaldum Ice1] Length = 340 Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats. Identities = 49/308 (15%), Positives = 107/308 (34%), Gaps = 34/308 (11%) Query: 54 STPKREYINSPRKKPTTLKWLISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFDYR 112 + P + +P + I Y + A G+ A+++R ++ S Q+I D Sbjct: 26 NPPVAQNTQAPTAE---WDCWIDRYLRYLAAEGNHAIHTRSAYASDLAQLIELLEQTDSG 82 Query: 113 KITTKHIRSGVESRKHTP--------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP 164 + + T SS + L + R F++ VR+ + +P ++ P Sbjct: 83 VPRLPEVSADRLRLCITRLYAVGMERSSLARKLAAWRGFFRYLVREGQLTSHPMKRLKSP 142 Query: 165 KRKTEGIRPWTKEDM------QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ 218 K + ++ ++ + + + E SGLR ++ C + + Sbjct: 143 KLGRPLPKTLSESEVSCLLSAAERRGDEPLALRNLAMVELFYASGLRVAELCGLDLGSVD 202 Query: 219 NNIFSIKT-QKTGTIITVELPDGFMKLL------------AMTPIGKETFFINNDKQKMN 265 + ++ K G V + + ++ + F+N+ ++++ Sbjct: 203 AGLGYVRVLGKGGKERIVPVGEQALEAISRYLKQGRPALARRQREVSPALFLNHRGRRLS 262 Query: 266 ATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 A A + + S H +R AT D GA + G + + YT Sbjct: 263 VRGAQDILSRIADGAALERGISPHTLRHTFATHLLDGGADLRSVQEMLGHAKLSTTQIYT 322 Query: 324 K-GADRIR 330 A+R++ Sbjct: 323 HVSAERLK 330 >gi|253577466|ref|ZP_04854781.1| integrase/recombinase [Paenibacillus sp. oral taxon 786 str. D14] gi|251843166|gb|EES71199.1| integrase/recombinase [Paenibacillus sp. oral taxon 786 str. D14] Length = 339 Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats. Identities = 38/259 (14%), Positives = 87/259 (33%), Gaps = 16/259 (6%) Query: 81 SAHWGSLAVNSRISFESYFDQ--IIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLT 138 S NS ++ ++ I D + K + VE + + ++ + Sbjct: 55 SDDTIKFERNSLKCYQRILEEQDIEPDIYDISIDLLRNKFVMFMVEKKGYKLNTINNRIK 114 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRL 194 +++ F + + ++ NP ++ K I +T+E + + + + + Sbjct: 115 AIKRFFTFLHEEGWIPDNPAAHLKTRKGHQPTIPSFTEEQVVALFKQPDQNTFTGFRDFV 174 Query: 195 AFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQKTGTIITVELPDGFMKLL-----AM 247 +L +GLR + + ++++ K+ + D KLL A Sbjct: 175 MLSLILDTGLRVGEMIKLKTSQVDIKDSQLLGVIGKSKKPRDIPFCDDVRKLLIRYIKAR 234 Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATA 304 + + FF+ +++ F AG+ S H +R A + Sbjct: 235 GDVPSQYFFVTLHGRQLGVRTFQDTLHQYGKDAGITNVRVSPHTLRHTFAKMYILQDGDP 294 Query: 305 HELMATYGWKTVDQAETYT 323 + L G + D + Y Sbjct: 295 YSLQDILGHTSQDMVKKYV 313 >gi|222097276|ref|YP_002531333.1| site-specific tyrosine recombinase xerc [Bacillus cereus Q1] gi|229197941|ref|ZP_04324656.1| Tyrosine recombinase xerC [Bacillus cereus m1293] gi|221241334|gb|ACM14044.1| site-specific integrase/recombinase [Bacillus cereus Q1] gi|228585520|gb|EEK43623.1| Tyrosine recombinase xerC [Bacillus cereus m1293] gi|324327728|gb|ADY22988.1| site-specific tyrosine recombinase XerC [Bacillus thuringiensis serovar finitimus YBT-020] Length = 299 Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats. Identities = 44/272 (16%), Positives = 96/272 (35%), Gaps = 26/272 (9%) Query: 85 GSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIRSGV---ESRKHTPSSAIQFLT 138 + + + S+++ + + + G + IT +R + K S + ++ Sbjct: 18 RNYSKYTIASYQNDLEHFVQFMEREGISSFLDITYADVRLYLTTLHDEKLARKSVARKVS 77 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRL 194 S+R L+++ +R+ Y NP PK++ + E++++ G + + Sbjct: 78 SLRSLYRFLMREGYRKDNPFALASLPKKELSIPKFLYAEELEELFEVSDTETPLGQRNQA 137 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE------------LPDGF 241 E + +G+R S+ + + + +I K + + +G Sbjct: 138 LLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQRYIPFGSYAQDALITYIENGR 197 Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299 +L T F+N + + KA + S H +R AT D Sbjct: 198 KQLAKKTEEQSHMVFLNAKGTPLTSRGVRYVLNELIKKASLTMRISPHMLRHTFATHMLD 257 Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRL 331 GA + G + + + YT + RL Sbjct: 258 EGADLRTVQELLGHENLSTTQIYTH-VSKERL 288 >gi|300858389|ref|YP_003783372.1| tyrosine recombinase [Corynebacterium pseudotuberculosis FRC41] gi|300685843|gb|ADK28765.1| tyrosine recombinase [Corynebacterium pseudotuberculosis FRC41] gi|302206103|gb|ADL10445.1| site-specific tyrosine recombinase XerD [Corynebacterium pseudotuberculosis C231] gi|302330656|gb|ADL20850.1| site-specific tyrosine recombinase XerD [Corynebacterium pseudotuberculosis 1002] gi|308276340|gb|ADO26239.1| site-specific tyrosine recombinase XerD [Corynebacterium pseudotuberculosis I19] Length = 310 Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats. Identities = 55/275 (20%), Positives = 96/275 (34%), Gaps = 34/275 (12%) Query: 90 NSRISFESYFDQIIRKSGDFDYRKITTKHIRSG-VESRKHTP---------SSAIQFLTS 139 N R + Y D I + G D +T++ + S ++ R+ P SSA + L Sbjct: 28 NYRRDVQRYLDWIESR-GIDDLGILTSRDVESYVLDLRRGDPDTGKQPLAASSAGRALVV 86 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-------WSEGSQP 192 R L K+A+ + ++++ V P + ++++ S E + Sbjct: 87 ARGLHKFAMMEGLISVDVAGEVSPPSTGRHLPDTLSVTEVEELISAIPTDNIATPEDLRD 146 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVELPDGFMKLLAM- 247 E L +G R S+ V + + K V + K L Sbjct: 147 AALIELLYGTGARISEIMNLTVDEVTVLEETEGMLRIVGKGDKHRIVPVGSMAQKALRRY 206 Query: 248 --------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS 297 T F+N ++ K+ A +AGV K S H +R A+ Sbjct: 207 LVRARPQLTKGKSHALFLNKRGGALSRQSAWQILKSSARRAGVQKDISPHTLRHSYASHL 266 Query: 298 ADAGATAHELMATYGWKTVDQAETYTK-GADRIRL 331 + GA + G +V + YT AD +R+ Sbjct: 267 LEGGADVRVVQELLGHSSVTTTQIYTHITADNLRI 301 >gi|326204493|ref|ZP_08194350.1| integrase family protein [Clostridium papyrosolvens DSM 2782] gi|325985286|gb|EGD46125.1| integrase family protein [Clostridium papyrosolvens DSM 2782] Length = 301 Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats. Identities = 42/285 (14%), Positives = 92/285 (32%), Gaps = 33/285 (11%) Query: 88 AVNSRISFESYFDQIIRKSGDF------DYRKITTKHIRSGVE----SRKHTPSSAIQFL 137 + ++ ++ S + + + T H+ + + +A + Sbjct: 23 SESTIKAYRSDLTLLNEFLDLRYKSLLNNLSAMKTSHVLQYRDFLFHKKGFKRKTADRKY 82 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRK-TEGIRPWTKEDMQQFKSFWSEG-----SQ 191 R ++ ++ NP L V+ K K T+ E++ Q + ++ Sbjct: 83 FCFRKFCEYLELAGFIEKNPALEVKHKKYKDTKAPNFLEWEEIYQIIDVVALFETENTAR 142 Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAM-- 247 L Y G R S+ + + N +I +KT T + + + Sbjct: 143 DAAMLSVLAYLGCRRSEVIDLDWKDIDFQKNEIAIYRRKTKTYDYLPMHPNLENAMRRYY 202 Query: 248 ---TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK----SAHGVRKFSATISADA 300 K F++ +++ T F F +G+ K + H R + Sbjct: 203 AENRFTPKGPLFLSERGNRLSVTAFKQMFDKAVLYSGIKKEFDITPHTFRHSFISNMIRE 262 Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDS 345 GA+ E+ G + + Y +G ++ R I S + + Sbjct: 263 GASIAEIQEYTGHSDLGSLQVYFH------MGTQHKRNILSKIPA 301 >gi|227824418|ref|ZP_03989250.1| recombinase [Acidaminococcus sp. D21] gi|226904917|gb|EEH90835.1| recombinase [Acidaminococcus sp. D21] Length = 298 Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats. Identities = 45/270 (16%), Positives = 92/270 (34%), Gaps = 22/270 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT---PSSAIQFLTSMR 141 LA N+R S+ ++ ++I+ I + + K +S+ + L +++ Sbjct: 22 MGLARNTRESYGRDL-RLFAVWVKKPIKEISRDDILTYMSVLKAQNYAVTSSARKLAALK 80 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAFE 197 F++ + + ++PC VE R + + +++ + EG + R E Sbjct: 81 AFFRFMTAEGTIEVDPCEVVESETRGMVLPKVLSVDEVNRLFEAPDLDTPEGYRDRTMLE 140 Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELP----DGFMKLLAMTP--- 249 + +G+R S+ V + + K + L + + L+ Sbjct: 141 VMYATGMRVSELLALKVGSVNLASHYVIAYGKGAKERLIPLGHYAIEYLKEYLSRVRPHF 200 Query: 250 ----IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGAT 303 + F+ M +F K K + KS H +R AT D GA Sbjct: 201 VKENRPCDDLFLTIRGTGMTRQRFWQLIKNYGLKVHIAKSLTPHILRHSFATHMLDNGAD 260 Query: 304 AHELMATYGWKTVDQAETYTKGADRIRLGI 333 + G + + YT + I Sbjct: 261 LRTVQELLGHSDISTTQIYTHLTNHRLKAI 290 >gi|317476381|ref|ZP_07935630.1| tyrosine recombinase XerC [Bacteroides eggerthii 1_2_48FAA] gi|316907407|gb|EFV29112.1| tyrosine recombinase XerC [Bacteroides eggerthii 1_2_48FAA] Length = 294 Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats. Identities = 47/263 (17%), Positives = 96/263 (36%), Gaps = 23/263 (8%) Query: 85 GSLAVNSRISFESYFDQI----IRKSGDFDYRKITTKHIRSGV---ESRKHTPSSAIQFL 137 + + + +++ ++ GD + IR + R P++ + L Sbjct: 15 RNYSKGTVRYYQADILELQKFGEELLGDLTPSDVDAGLIREWITSLMDRGCAPNTVNRKL 74 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS-----EGSQP 192 +S+R +K+ +R+ VA +P + PK+K + D+ + EG + Sbjct: 75 SSVRSYYKYLLRKGMVAADPLQKITGPKKKKPLPVFLREGDVNRLLDDVDFGEGFEGCRD 134 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLA----- 246 RL E +G+R S+ + + + IK T K + + + Sbjct: 135 RLIIEMFYVTGMRLSELIGLDDKDIDFSASLIKVTGKRNKQRLLPFDEELRCSMQEYVNV 194 Query: 247 ---MTPIGKETFFINNDKQKMNATQFSIWFKA--KATKAGVNKSAHGVRKFSATISADAG 301 P+ + FFI +++N + + K +S H +R AT + G Sbjct: 195 RNQALPVRSDAFFIRKTGERLNRSIVAYIVKRNLSKVVTVKKRSPHVLRHTFATAMLNNG 254 Query: 302 ATAHELMATYGWKTVDQAETYTK 324 A + G +++ E YT Sbjct: 255 ADLGSIKELLGHESLATTEVYTH 277 >gi|254522819|ref|ZP_05134874.1| tyrosine recombinase XerD [Stenotrophomonas sp. SKA14] gi|219720410|gb|EED38935.1| tyrosine recombinase XerD [Stenotrophomonas sp. SKA14] Length = 325 Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats. Identities = 47/268 (17%), Positives = 84/268 (31%), Gaps = 30/268 (11%) Query: 86 SLAVNSRISFESYFDQIIR-----KSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSM 140 LA + S+ + + R G + + +P S + L+++ Sbjct: 40 GLARATLDSYRRDLEGLARWMDGRDGGLAGIERPGLFDYLAWRTRHGWSPRSNARLLSAL 99 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRLAF 196 R F VR+ + +P ++ PK + + + + G + R Sbjct: 100 RAYFADGVRRGERSEDPSALLDPPKLPRLLPKALAESQIDALLAAPDVERPLGLRDRAML 159 Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLL---------- 245 E + +GLR S+ + I+ T K V L + L Sbjct: 160 ELMYAAGLRVSELVLLPATSVNLRQGVIRVTGKGSKERLVPLGEESQHWLERYLQQSRPQ 219 Query: 246 -------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSAT 295 G+ F+ + F K A AG++ S HG+R AT Sbjct: 220 LVGKGRVQALADGQTPLFVEPTLHALTRQAFWHLVKRHAQVAGIDPARISPHGLRHSFAT 279 Query: 296 ISADAGATAHELMATYGWKTVDQAETYT 323 + GA L G ++ + YT Sbjct: 280 HLLNRGADLRALQMLLGHSSLSTTQIYT 307 >gi|294790009|ref|ZP_06755213.1| putative phage integrase [Simonsiella muelleri ATCC 29453] gi|294482052|gb|EFG29775.1| putative phage integrase [Simonsiella muelleri ATCC 29453] Length = 347 Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats. Identities = 56/338 (16%), Positives = 108/338 (31%), Gaps = 31/338 (9%) Query: 13 KERTRH-GKIIYYF---RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68 ++R R GKI+ Y+ +G+R+ + Y A+ SP + Sbjct: 14 RKRQRKNGKIVIYYFGEVSQNGKRVEISLGT------EYFVAVKKWAEINIEKISPSQS- 66 Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG---DFDYRKITTKHIRSGVES 125 T +Y VN+ ++ + D +IT +H+ + Sbjct: 67 ITFSQAADKYFSEVIEPKGKVNTINGVKNSIKSLKTFFSTPKDAPLHEITPQHLNRFLAW 126 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVA---INPCLSVERPKRKTEGIRPWTKEDMQQF 182 R PSSA + +F+ A + Y+ NP V++ K + + Sbjct: 127 RSSAPSSANVEIAFFSAIFEHAQKSGYIDFEKKNPVKGVKKNKIEKRDNYI-NDKLFDVV 185 Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242 Q R + L +G R D C + + I +IK KT + E+ Sbjct: 186 YEHAD--QQMRDLMDIALLTGQRPIDICSLHTSQISDGILNIKQVKTSARLRFEISGSLK 243 Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWF---KAKATK-------AGVNKSAHGVRKF 292 +++ F+N + +N + WF + + + N +R Sbjct: 244 EIIDRIAPENGFLFLNKHGKPLNRQLITNWFLNLRKQIMQERPELEEELRNFQFRDLRAK 303 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 +AT + G + + Y + + Sbjct: 304 AATDAYLQ-NDKETARELLGHTSTNMTNRYIRQVKVQK 340 >gi|294637959|ref|ZP_06716226.1| tyrosine recombinase XerC [Edwardsiella tarda ATCC 23685] gi|291088891|gb|EFE21452.1| tyrosine recombinase XerC [Edwardsiella tarda ATCC 23685] Length = 303 Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats. Identities = 45/279 (16%), Positives = 95/279 (34%), Gaps = 20/279 (7%) Query: 66 KKPTTLKWLISEYRKSAH-WGSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIRS 121 TL +S + + L+ + ++ II ++SG D+ + + +R+ Sbjct: 3 SSAETLNAPVSAFLQMLRVERQLSPRTVDTYRRQLAAIIALLQESGVTDWLALDSARVRA 62 Query: 122 GVESRKHT---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 V + P+S L+++R W V +A NP V P++ + +D Sbjct: 63 LVARSRRQGLEPASLALRLSALRSFLDWQVSCGALAANPAKGVAAPRQGRHLPKNLDVDD 122 Query: 179 MQQFKSFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIIT 234 + + + + + R E + GLR S+ +HL K Sbjct: 123 VNRLLAIDESDTLAVRDRAMLELMYGGGLRLSELVGLDCRHLDLATGEVWVLGKGSKERR 182 Query: 235 VELPDGFMKLLA-------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKS 285 + + ++ + + FI++ +++ F K GV + Sbjct: 183 LPIGREAVRWVEKWLALRIALQPQDDALFISSRGGRISPRNVQKRFAEWGVKQGVTSHIH 242 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R AT ++ + G + + YT Sbjct: 243 PHKLRHSFATHLLESSGDLRAVQELLGHANLSTTQIYTH 281 >gi|294085482|ref|YP_003552242.1| tyrosine recombinase XerD [Candidatus Puniceispirillum marinum IMCC1322] gi|292665057|gb|ADE40158.1| tyrosine recombinase XerD [Candidatus Puniceispirillum marinum IMCC1322] Length = 311 Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats. Identities = 55/285 (19%), Positives = 96/285 (33%), Gaps = 34/285 (11%) Query: 88 AVNSRISFESYFDQI--IRKSGDFDYRKITTKHIRSGVES---RKHTPSSAIQFLTSMRV 142 A N+ ++ + + I + D T +R + + R+ + S + L+++R Sbjct: 29 AANTLAAYRRDLNDVATIMQGIDKTLHNATVDDLRQAIHAWHLRRLSARSVARRLSALRQ 88 Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW------SEGSQPRLAF 196 W V NP ++ P + T+ ++ + + R Sbjct: 89 FMGWLVEDNIRIDNPMRWIDSPSVPAPAPKSLTEAEVIALLKAANALEPEAAAVRARAIL 148 Query: 197 EFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFMKLL---------A 246 E +GLR S+ + V + N + T K G V L D + Sbjct: 149 EIFYATGLRVSEVVKLQVAQFRRNPESLLVTGKGGRERVVPLGDAAKTAVQYWIEIRDRH 208 Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGAT 303 + + F D M QF+ K+ A AG+N S H +R AT + GA Sbjct: 209 AAALMSDYLFPMGDG-PMTRHQFASLLKSLALAAGINPDRVSPHVLRHSFATHMLNRGAD 267 Query: 304 AHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348 L G + + YT R++ +V S P Sbjct: 268 LRSLQTLLGHADITTTQIYTATR---------PDRLAGLVASAHP 303 >gi|323703102|ref|ZP_08114757.1| integrase family protein [Desulfotomaculum nigrificans DSM 574] gi|323531996|gb|EGB21880.1| integrase family protein [Desulfotomaculum nigrificans DSM 574] Length = 317 Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats. Identities = 49/295 (16%), Positives = 98/295 (33%), Gaps = 40/295 (13%) Query: 84 WGSLAVNS-RISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT---PSSAIQFLTS 139 + A+++ + + S + I G + I T ++ P++ + Sbjct: 15 YKIYAISTWKNYYRSIKNHIFPALGHILLKDIKTDDVQRLYNKMAKAGLAPATIRRNHQI 74 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFL 199 + AV+ + ++ NP +V+ PK +R T E+M +F S E AF L Sbjct: 75 IHSCLNQAVKNKLLSWNPADAVKLPKLNDTPVRTMTPEEMAKFISVL-ENDLWGAAFLTL 133 Query: 200 LYSGLRCSDSCRAGVQHLQ-----------------NNIFSIKTQKTGTIITVELPDGFM 242 L +G+ + Q + + ++ + + T+ +P+ Sbjct: 134 LGTGISLGELLALRWQDIDLKSKVLTINQALARTKSRGLIFVEPKTDKSKRTIPMPEPVA 193 Query: 243 KL------------LAMTP--IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA-- 286 + LA P ++ F ++ F+ F KA V K Sbjct: 194 EALQKHRVQMAQIKLAAGPKYTDQDLVFCTTYGTPIHPRNFTRKFYTLREKAKVPKDINL 253 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGA-DRIRLGIKNSRRI 339 H +R AT + G + G + TY+ + D R ++ Sbjct: 254 HALRHTFATRLLEEGENLKVVQDLLGHADISTTANTYSHVSPDVKRKAAAKMDKL 308 >gi|304321470|ref|YP_003855113.1| putative integrase/recombinase DNA recombination protein [Parvularcula bermudensis HTCC2503] gi|303300372|gb|ADM09971.1| putative integrase/recombinase DNA recombination protein [Parvularcula bermudensis HTCC2503] Length = 323 Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats. Identities = 36/265 (13%), Positives = 84/265 (31%), Gaps = 25/265 (9%) Query: 85 GSLAVNSRISFESYFDQII-----RKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139 + + ++ +++ R + + + + ++A L++ Sbjct: 23 RGASPRTLRNYGRDLERVSVFLFQRGTSLLRATAADLSAYIDHLHGQGRSAATAALCLSA 82 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW--------SEGSQ 191 +R + +A + NP V+RPK + + + ++ + Sbjct: 83 LRQFYLFAYTEGMREDNPAELVDRPKARRPLPKILSIDEAASLLDLARDEAACMKPGPLR 142 Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLL----- 245 E L +GLR S+ C ++ + K V L DG + + Sbjct: 143 LHALLEVLYATGLRVSELCSLPRGAVRAGEPWMTVLGKGQKERLVPLTDGAVMAVSHYVA 202 Query: 246 -AMTPIGKETFFINNDKQ--KMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISAD 299 F + + + + + K + +AG++ S H +R A+ + Sbjct: 203 VQTDAERASAFLFPSRGKTGHITTARVAQLLKELSARAGIDPTRVSPHVLRHAFASHLLE 262 Query: 300 AGATAHELMATYGWKTVDQAETYTK 324 GA + G + + YT Sbjct: 263 GGADLRIVQQLLGHADISTTQIYTH 287 >gi|30263835|ref|NP_846212.1| site-specific tyrosine recombinase XerC [Bacillus anthracis str. Ames] gi|47529259|ref|YP_020608.1| site-specific tyrosine recombinase XerC [Bacillus anthracis str. 'Ames Ancestor'] gi|49186681|ref|YP_029933.1| site-specific tyrosine recombinase XerC [Bacillus anthracis str. Sterne] gi|165873312|ref|ZP_02217917.1| tyrosine recombinase XerC [Bacillus anthracis str. A0488] gi|167642028|ref|ZP_02400258.1| tyrosine recombinase XerC [Bacillus anthracis str. A0193] gi|170689658|ref|ZP_02880838.1| tyrosine recombinase XerC [Bacillus anthracis str. A0465] gi|170709363|ref|ZP_02899777.1| tyrosine recombinase XerC [Bacillus anthracis str. A0389] gi|177655993|ref|ZP_02937120.1| tyrosine recombinase XerC [Bacillus anthracis str. A0174] gi|229603261|ref|YP_002868069.1| tyrosine recombinase XerC [Bacillus anthracis str. A0248] gi|254683462|ref|ZP_05147322.1| site-specific tyrosine recombinase XerC [Bacillus anthracis str. CNEVA-9066] gi|254735869|ref|ZP_05193575.1| site-specific tyrosine recombinase XerC [Bacillus anthracis str. Western North America USA6153] gi|254739605|ref|ZP_05197299.1| site-specific tyrosine recombinase XerC [Bacillus anthracis str. Kruger B] gi|254751200|ref|ZP_05203239.1| site-specific tyrosine recombinase XerC [Bacillus anthracis str. Vollum] gi|254759317|ref|ZP_05211342.1| site-specific tyrosine recombinase XerC [Bacillus anthracis str. Australia 94] gi|30258479|gb|AAP27698.1| tyrosine recombinase XerC [Bacillus anthracis str. Ames] gi|47504407|gb|AAT33083.1| tyrosine recombinase XerC [Bacillus anthracis str. 'Ames Ancestor'] gi|49180608|gb|AAT55984.1| site-specific recombinase, phage integrase family [Bacillus anthracis str. Sterne] gi|164710950|gb|EDR16522.1| tyrosine recombinase XerC [Bacillus anthracis str. A0488] gi|167510008|gb|EDR85424.1| tyrosine recombinase XerC [Bacillus anthracis str. A0193] gi|170125737|gb|EDS94650.1| tyrosine recombinase XerC [Bacillus anthracis str. A0389] gi|170666382|gb|EDT17165.1| tyrosine recombinase XerC [Bacillus anthracis str. A0465] gi|172079892|gb|EDT65000.1| tyrosine recombinase XerC [Bacillus anthracis str. A0174] gi|229267669|gb|ACQ49306.1| tyrosine recombinase XerC [Bacillus anthracis str. A0248] Length = 299 Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats. Identities = 44/272 (16%), Positives = 96/272 (35%), Gaps = 26/272 (9%) Query: 85 GSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIRSGV---ESRKHTPSSAIQFLT 138 + + + S+++ + + + G + IT +R + K S + ++ Sbjct: 18 RNYSKYTIASYQNDLEHFVQFMEREGISSFLDITYADVRLYLTTLHDEKLARKSVARKVS 77 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRL 194 S+R L+++ +R+ Y NP PK++ + E++++ G + + Sbjct: 78 SLRSLYRFLMREGYRKDNPFALASLPKKELSIPKFLYAEELEELFEVSDTETPLGQRNQA 137 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE------------LPDGF 241 E + +G+R S+ + + + +I K + + +G Sbjct: 138 LLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQRYIPFGSYAQDALITYIENGR 197 Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299 +L T F+N + + KA + S H +R AT D Sbjct: 198 KQLAEKTEEQSHMVFLNAKGTPLTSRGVRYVLNELIKKASLTMRISPHILRHTFATHMLD 257 Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRL 331 GA + G + + + YT + RL Sbjct: 258 EGADLRTVQELLGHENLSTTQIYTH-VSKERL 288 >gi|325107018|ref|YP_004268086.1| tyrosine recombinase XerD subunit [Planctomyces brasiliensis DSM 5305] gi|324967286|gb|ADY58064.1| tyrosine recombinase XerD subunit [Planctomyces brasiliensis DSM 5305] Length = 309 Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats. Identities = 39/274 (14%), Positives = 91/274 (33%), Gaps = 28/274 (10%) Query: 77 EYRKSAHWGSLAVNSRISFE----SYFDQIIRKSG----DFDYRKITTKHIRSGVESRKH 128 Y + + + +R ++ S+ D + G D + + + + Sbjct: 10 RYLRHER--NASELTRKAYAEDFASFLDYCEDRHGYFPEPRDVDTTFLRGYLAYLHDCGY 67 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK----S 184 ++ + L +R LF++ +R++ NP ++ P+ + T ++ Q + Sbjct: 68 QRTTIARRLACLRSLFRYCLREQLCDSNPAKALRTPRTGRKLPHYLTTSEVSQLLEAPPA 127 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE-------- 236 G + R E L +GLR ++ ++ + + + G + Sbjct: 128 NHPLGIRDRAILETLYTAGLRVAELVALDIEDWDRDANVLLVRGKGRKERIAPVGSYAER 187 Query: 237 ----LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVR 290 + ++ F+N ++ + +G+ S H +R Sbjct: 188 ALSRWLEIREVGPRANSDDQQAIFLNKFGTRLTTRSVGRLLEKHLQTSGLSNKTSPHTLR 247 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK 324 AT D GA + G K++ + YT Sbjct: 248 HSFATHLLDGGADLRSVQELLGHKSLTTTQIYTH 281 >gi|206978533|ref|ZP_03239383.1| tyrosine recombinase XerC [Bacillus cereus H3081.97] gi|217961251|ref|YP_002339819.1| site-specific tyrosine recombinase XerC [Bacillus cereus AH187] gi|229140473|ref|ZP_04269028.1| Tyrosine recombinase xerC [Bacillus cereus BDRD-ST26] gi|206743256|gb|EDZ54713.1| tyrosine recombinase XerC [Bacillus cereus H3081.97] gi|217067516|gb|ACJ81766.1| tyrosine recombinase XerC [Bacillus cereus AH187] gi|228643034|gb|EEK99310.1| Tyrosine recombinase xerC [Bacillus cereus BDRD-ST26] Length = 299 Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats. Identities = 44/272 (16%), Positives = 96/272 (35%), Gaps = 26/272 (9%) Query: 85 GSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIRSGV---ESRKHTPSSAIQFLT 138 + + + S+++ + + + G + IT +R + K S + ++ Sbjct: 18 RNYSKYTIASYQNDLEHFVQFMEREGISSFLDITYADVRLYLTTLHDEKLARKSVARKVS 77 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRL 194 S+R L+++ +R+ Y NP PK++ + E++++ G + + Sbjct: 78 SLRSLYRFLMREGYRKDNPFALASLPKKELSIPKFLYAEELEELFEVSDTKTPLGQRNQA 137 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE------------LPDGF 241 E + +G+R S+ + + + +I K + + +G Sbjct: 138 LLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQRYIPFGSYAQDALITYIENGR 197 Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299 +L T F+N + + KA + S H +R AT D Sbjct: 198 KQLAKKTEEQSHMVFLNAKGTPLTSRGVRYVLNELIKKASLTMRISPHMLRHTFATHMLD 257 Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRL 331 GA + G + + + YT + RL Sbjct: 258 EGADLRTVQELLGHENLSTTQIYTH-VSKERL 288 >gi|108799908|ref|YP_640105.1| site-specific tyrosine recombinase XerD [Mycobacterium sp. MCS] gi|119869018|ref|YP_938970.1| site-specific tyrosine recombinase XerD [Mycobacterium sp. KMS] gi|108770327|gb|ABG09049.1| tyrosine recombinase XerD subunit [Mycobacterium sp. MCS] gi|119695107|gb|ABL92180.1| tyrosine recombinase XerD subunit [Mycobacterium sp. KMS] Length = 318 Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats. Identities = 44/274 (16%), Positives = 92/274 (33%), Gaps = 35/274 (12%) Query: 85 GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGV----------ESRKHTPS 131 +A N+ S+ + G D K+T + + ++ + Sbjct: 26 RGVAANTLSSYRRDLRRYSEHLTGRGVEDLAKVTESDVSDFLVALRRGDPDTGAQALSAV 85 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF--------K 183 SA + L ++R L ++A + ++ +V+ P + + +++ + Sbjct: 86 SAARALIAVRGLHRFATAEGLTDVDVARAVKPPTPGRRLPKSLSIDEVLALLDGAGGDSE 145 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFM 242 + + R E L +G R S++ + + + + K G V + + Sbjct: 146 ADGPLTLRNRALLELLYSTGARISEAVGLDIDDVDTHARSVLLRGKGGKQRLVPIGRPAV 205 Query: 243 KLL-----------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGV 289 L A G F+N +++ + A +AG+ S H + Sbjct: 206 SALDAYLVRGRPDLARRGRGTPAIFLNARGGRLSRQSAWQVLQDAAERAGITSAVSPHTL 265 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYT 323 R AT D GA + G +V + YT Sbjct: 266 RHSFATHLLDGGADVRVVQELLGHASVTTTQIYT 299 >gi|119946910|ref|YP_944590.1| tyrosine recombinase XerD [Psychromonas ingrahamii 37] gi|119865514|gb|ABM04991.1| tyrosine recombinase XerD subunit [Psychromonas ingrahamii 37] Length = 298 Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats. Identities = 44/285 (15%), Positives = 100/285 (35%), Gaps = 31/285 (10%) Query: 75 ISEYRKSAHW--GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE-------- 124 I ++ S W L+ N+ S+ +++ + + ++ Sbjct: 6 IDQFLDSL-WLERGLSQNTLESYRHDL-RLVEIFLATRLVSLCSASSLDLIDYFSCRLSG 63 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 +++ +S + ++++R +++ R++ +P +E PK + ++ ++ S Sbjct: 64 EKEYKNASTARLMSALRRYYQYLCREKIREDDPSAKLESPKIIKPLPKSLSESEVDGLLS 123 Query: 185 FWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPD 239 + + E L +GLR S+ ++ + ++ T K V L + Sbjct: 124 SPDLTDSVQFRDKAMLELLYATGLRVSELVGLSMEEINLKQGVVRVTGKGDKTRLVPLGE 183 Query: 240 GFMKLLAM----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK---SA 286 + + + F + M F K A G++K S Sbjct: 184 EAIYWVERYIEEARPDLLKGQSSDVLFPSRRATVMVRQTFWHRIKFYAQLCGIDKEALSP 243 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIR 330 H +R AT + GA + G + + YT A DR++ Sbjct: 244 HVLRHAFATHLLNYGADLRVVQMLLGHSNLSTTQIYTHIAQDRLK 288 >gi|329962250|ref|ZP_08300256.1| putative tyrosine recombinase XerC [Bacteroides fluxus YIT 12057] gi|328530358|gb|EGF57235.1| putative tyrosine recombinase XerC [Bacteroides fluxus YIT 12057] Length = 294 Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats. Identities = 45/263 (17%), Positives = 95/263 (36%), Gaps = 23/263 (8%) Query: 85 GSLAVNSRISFESYFDQI----IRKSGDFDYRKITTKHIRSGVESRKHTP---SSAIQFL 137 + + + + S ++ GD I + +R + S S+ + L Sbjct: 15 RNYSEGTVKYYRSDILELQDFGKEMLGDLTPSDIDAELVREWIASLMDRGCASSTINRKL 74 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS-----EGSQP 192 +S+R +K+ +R+ VA++P + PK+K + +M + EG + Sbjct: 75 SSIRAYYKFLLRRGEVAVDPLRKITGPKKKKPLPVFLREGEMDKLLDDTDFGEGFEGCRN 134 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLA----- 246 L E +G+R S+ + + + IK T K + + + Sbjct: 135 HLIIEMFYATGMRLSELIGLDDKDVDYSASLIKVTGKRNKQRLIPFDEELKFSMQEYVNV 194 Query: 247 ---MTPIGKETFFINNDKQKMNATQFSIWFKA--KATKAGVNKSAHGVRKFSATISADAG 301 P+ + FF+ + +++ + + K +S H +R AT + G Sbjct: 195 RNETIPVRSDAFFVRENGKRLYRSIVAYLVKRNLSKVVTVKKRSPHVLRHTFATAMLNNG 254 Query: 302 ATAHELMATYGWKTVDQAETYTK 324 A + G +++ E YT Sbjct: 255 ADLGSIKELLGHESLATTEVYTH 277 >gi|298386165|ref|ZP_06995722.1| tyrosine recombinase XerC [Bacteroides sp. 1_1_14] gi|298261393|gb|EFI04260.1| tyrosine recombinase XerC [Bacteroides sp. 1_1_14] Length = 293 Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats. Identities = 52/276 (18%), Positives = 103/276 (37%), Gaps = 24/276 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIR----KSGDFDYRKITTKHIRSGV---ES 125 LI + + + + + +++ Q+ + G FD ++ + IR + Sbjct: 2 LIKSFLDYLRYERNYSEKTVLAYGEDIKQLQEFAQEEYGKFDPLEVEGELIREWIVSLMD 61 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 R +T +S + L+S+R +K+ +RQ V ++P + PK K + +M + Sbjct: 62 RGYTSTSVNRKLSSLRSFYKYLLRQGEVTVDPLRKITGPKNKKPLPVFLKENEMDKLLDD 121 Query: 186 WS-----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPD 239 +G + RL E +G+R S+ + + + +K T K + D Sbjct: 122 TDFGEGFKGCRDRLIIEMFYATGMRLSELIGLDDKDVDFSASLLKVTGKRNKQRLIPFGD 181 Query: 240 GFMKLL--------AMTPIGKETFFINNDKQKMNATQFSIWFKA-KATKAGVNK-SAHGV 289 +L+ P + FFI D ++ K + A + K S H + Sbjct: 182 ELKELMLEYINVRNEAIPERSKAFFIKEDGGRLYKNLVYNLVKRNLSKVATLKKRSPHVL 241 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 R AT + A + G +++ E Y Sbjct: 242 RHTFATTMLNNDAELGAVKELLGHESIATTEIYAHA 277 >gi|219669732|ref|YP_002460167.1| integrase family protein [Desulfitobacterium hafniense DCB-2] gi|219539992|gb|ACL21731.1| integrase family protein [Desulfitobacterium hafniense DCB-2] Length = 298 Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats. Identities = 45/272 (16%), Positives = 94/272 (34%), Gaps = 22/272 (8%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQII----RKSGDFD-------YRKITTKHIRSGV 123 +S + + + ++ +++ Q R+ G+ + + Sbjct: 7 LSLFDGHLKTQNRSQHTLMAYHKDLIQFFVFAARELGEEPEKVTVDQVDIYIVRSFLGEM 66 Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 R S + L+++R FK+ R+ + NP + PK + + E++ + Sbjct: 67 TDRGLERKSMARKLSALRAFFKFLCREGILQKNPIQRIATPKLGRKLPHFLSLEELDRLI 126 Query: 184 SFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVEL- 237 G++ ++ E L SGLR S+ Q + ++ + G V L Sbjct: 127 RTPDCATLLGARDQVILELLYGSGLRVSELADLNRQDIDAGSSLLRVRGKGNKERIVPLT 186 Query: 238 ---PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKF 292 + + L M +E +N +++ A +AG+ + H +R Sbjct: 187 NYALEAARQYLEMREDKQEALLLNYQGTRLSVRSIRRILDGLALEAGLSQHLHPHMLRHS 246 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTK 324 AT D GA + G + + YT Sbjct: 247 FATHLLDGGADLRSVQELLGHAKLSSTQIYTH 278 >gi|52141657|ref|YP_085172.1| site-specific tyrosine recombinase XerC [Bacillus cereus E33L] gi|51975126|gb|AAU16676.1| site-specific integrase/recombinase XerD protein [Bacillus cereus E33L] Length = 299 Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats. Identities = 44/272 (16%), Positives = 96/272 (35%), Gaps = 26/272 (9%) Query: 85 GSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIRSGV---ESRKHTPSSAIQFLT 138 + + + S+++ + + + G + IT +R + K S + ++ Sbjct: 18 RNYSKYTIASYQNDLEHFVQFMEREGISSFLDITYADVRLYLTTLHDEKLARKSVARKVS 77 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRL 194 S+R L+++ +R+ Y NP PK++ + E++++ G + + Sbjct: 78 SLRSLYRFLMREGYRKDNPFALASLPKKELSIPKFLYAEELEELFEVSDTATPLGQRNQA 137 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE------------LPDGF 241 E + +G+R S+ + + + +I K + + +G Sbjct: 138 LLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQRYIPFGSYAQDALITYIENGR 197 Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299 +L T F+N + + KA + S H +R AT D Sbjct: 198 KQLAEKTEEQSHMVFLNAKGTPLTSRGVRYVLNELIKKASLTMRISPHMLRHTFATHMLD 257 Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRL 331 GA + G + + + YT + RL Sbjct: 258 EGADLRTVQELLGHENLSTTQIYTH-VSKERL 288 >gi|313676501|ref|YP_004054497.1| integrase family protein [Marivirga tractuosa DSM 4126] gi|312943199|gb|ADR22389.1| integrase family protein [Marivirga tractuosa DSM 4126] Length = 293 Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats. Identities = 48/275 (17%), Positives = 101/275 (36%), Gaps = 27/275 (9%) Query: 76 SEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSG---VESRK 127 + K + + ++ +S+++ DQ + D D K +HIRS + Sbjct: 3 DTFFKYLQFEKRYSSHTLVSYQNDLDQFSKYLEDQFQTCDLLKAEHRHIRSWVVNLMQDG 62 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 P S + + ++R +K+A+ +E + NP ++ K E + +++M S Sbjct: 63 VKPRSINRKIIALRSFYKFAISREAIHQNPTQKIKALKSAKELPQFVQEKEMDNLLSHIV 122 Query: 188 -----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGF 241 EG++ L E L +G+R ++ +I+ K V Sbjct: 123 FPEDFEGNRDALIMELLYGTGMRLAELIGLKEDDFNRQAGTIRILGKGNKERVVPFHLEI 182 Query: 242 MKLLAM---------TPIGKETFFINNDKQ---KMNATQFSIWFKAKATKAGVNKSAHGV 289 + L + G+ ++N+ M + + + + T +S H + Sbjct: 183 GRRLDKYIFHKKELFSHNGQSPLIVSNNGSKAYPMLINRITKKYLDQVTTIS-KRSPHVL 241 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 R AT + GA + + G ++ + YT Sbjct: 242 RHTFATHLLNKGADLNAVKDMLGHSSLAATQVYTH 276 >gi|254427826|ref|ZP_05041533.1| tyrosine recombinase XerC [Alcanivorax sp. DG881] gi|196193995|gb|EDX88954.1| tyrosine recombinase XerC [Alcanivorax sp. DG881] Length = 307 Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats. Identities = 35/260 (13%), Positives = 91/260 (35%), Gaps = 20/260 (7%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR---SGVESRKHTPSSAIQFLTSMR 141 L+ ++ S++ + + G + +T IR + + + + + + L+++R Sbjct: 23 RRLSPHTVSSYQRDLVEARKVLGTQPWDTLTVHDIRSLAATLHRKGKSGKTIQRMLSTLR 82 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-----WSEGSQPRLAF 196 F++ +R+ NP + + PK + + + + + Sbjct: 83 TFFRYLMREGLARDNPAMDIRAPKSGKRLPKALDADQVSHLLDAGTHSSEPLALRDQAMM 142 Query: 197 EFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQKT-------GTIITVELPDGFMKLLAM 247 E L GLR ++ + L++ + + G + + Sbjct: 143 ELLYACGLRLAELLSLNLDSIDLRDGQLLVTGKGNKTRQLPVGKPALTAVRRWLKVRPLL 202 Query: 248 TPIGKET-FFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATA 304 G++T FI+ + ++++ + K A + G++ H +R AT ++ Sbjct: 203 IKSGEQTALFISKNGRRLSPSSVQQRLKRHALERGLDDHLHPHKLRHSFATHLLESSGDL 262 Query: 305 HELMATYGWKTVDQAETYTK 324 + G + + YT Sbjct: 263 RAVQELLGHADLATTQVYTH 282 >gi|71280796|ref|YP_269073.1| phage integrase family site specific recombinase [Colwellia psychrerythraea 34H] gi|71146536|gb|AAZ27009.1| site-specific recombinase, phage integrase family [Colwellia psychrerythraea 34H] Length = 334 Score = 123 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 62/332 (18%), Positives = 114/332 (34%), Gaps = 33/332 (9%) Query: 7 LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66 +PP V K K+ Y F+ G +IRL A + E + Sbjct: 12 MPPRVYKT-----KVAYVFQPKSGGKIRLCGLD---------VAKSLVWMLYEKECASLD 57 Query: 67 KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126 ++ L ++ SA + A ++ + Y ++ G D K+ KH+R ++ + Sbjct: 58 NFNSVASLFEKFFLSASFIDKAPRTQKDYLGYKKDLLIAFGKMDINKVEPKHVRMFMDKK 117 Query: 127 --KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 K S A + ++++ +F WA + + +NPC+ V++ K T + Q + Sbjct: 118 AVKSGISQANRHKSALQSIFSWAYERGKIKVNPCVGVKKFTEKARDRYV-TDVEYQALLN 176 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244 A E R D R + L + IK KTG E K Sbjct: 177 HACP--VIYAAAEISYLCMARRGDVERLRKEQLIADGIYIKQGKTGKKQIKEWSPRLKKA 234 Query: 245 LAMT----PIGKETFFINN-DKQKMNATQFSIWF----KAKATKAG--VNKSAHGVRKFS 293 ++ P + I+ + F + + G ++ + H + K Sbjct: 235 ISHANKVNPSISSMYVIHQFNGSGYGTNGFRDRWVSTMERARKSTGYLMDFTFHDL-KAK 293 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKG 325 + G + A G T+ Q Y + Sbjct: 294 GISDFE-GNLEEKRNAA-GHTTIKQTADYDRK 323 >gi|62184944|ref|YP_219729.1| site-specific tyrosine recombinase XerC [Chlamydophila abortus S26/3] gi|81312884|sp|Q5L6G3|XERC_CHLAB RecName: Full=Tyrosine recombinase xerC gi|62148011|emb|CAH63762.1| putative integrase/recombinase [Chlamydophila abortus S26/3] Length = 312 Score = 123 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 38/243 (15%), Positives = 88/243 (36%), Gaps = 23/243 (9%) Query: 103 IRKSGDFDYRKITTKHIR----SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPC 158 R+ + + +T +R ++ K + + L++++ ++ V+Q + +P Sbjct: 55 ERQEAELPFSLLTKDTVRLYILKLMQENKAK-RTIKRRLSAIKSFSQYCVKQRILPDDPT 113 Query: 159 LSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRA-G 213 +++ P+ E P T E ++ + G + R E SGLR S+ Sbjct: 114 ETIQGPRLPKELPSPITYEQVEILMATPDLSKYTGLRDRCLLELFYSSGLRISEIVAINH 173 Query: 214 VQ-HLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPI---------GKETFFINNDKQK 263 +++ I+ K V + + L + F+N ++ Sbjct: 174 WDIDFTSHLIRIR-GKGKKERLVPITPHAAQWLQHYLTHPARTSIEKDAQAIFLNRFGKR 232 Query: 264 MNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321 + F+ ++G+ + + H +R AT + G + A G +++ Sbjct: 233 LTTRSIDRKFQKYLRQSGLSGHITPHTIRHTIATHWLENGMDLKTIQALLGHSSLETTTI 292 Query: 322 YTK 324 YT Sbjct: 293 YTH 295 >gi|83951798|ref|ZP_00960530.1| tyrosine recombinase XerD [Roseovarius nubinhibens ISM] gi|83836804|gb|EAP76101.1| tyrosine recombinase XerD [Roseovarius nubinhibens ISM] Length = 314 Score = 123 bits (310), Expect = 3e-26, Method: Composition-based stats. Identities = 46/269 (17%), Positives = 88/269 (32%), Gaps = 32/269 (11%) Query: 88 AVNSRISFESYFDQIIRKSGDFDY--RKITTKHIRSGV---ESRKHTPSSAIQFLTSMRV 142 A N+ +++ + + + + + + +++ S+ + L++++ Sbjct: 21 AKNTLMAYARDLSDFSQWVENKSLSLATLQQSDVEAYLVHCDAQGLAQSTRARRLSAVKQ 80 Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ---QFKSFWSEGSQPRLA---- 195 L+++A + NP L ++ P R + ++ ++ Q G RL Sbjct: 81 LYRFAFDERLRGDNPALRIKGPGRSGRLPKTLSEAEVDGLLQAARSHGRGPADRLRNTCL 140 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFMKLLA-------- 246 E L +GLR ++ V + N + K G V L L Sbjct: 141 MELLYATGLRVTELVSLPVAATRGNPELLMVRGKGGKERMVPLSPPAQVALRDWLAHRDA 200 Query: 247 --------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSAT 295 P F + + +F + K A AGV + H +R AT Sbjct: 201 MEETARQKGLPASPFLFPSRSKDGHLTRHRFYLLIKDLAVAAGVSPSKVTPHTLRHAFAT 260 Query: 296 ISADAGATAHELMATYGWKTVDQAETYTK 324 GA + G V E YT Sbjct: 261 HLLANGADLRAIQTLLGHADVATTEIYTH 289 >gi|160915175|ref|ZP_02077388.1| hypothetical protein EUBDOL_01183 [Eubacterium dolichum DSM 3991] gi|158432974|gb|EDP11263.1| hypothetical protein EUBDOL_01183 [Eubacterium dolichum DSM 3991] Length = 302 Score = 123 bits (310), Expect = 3e-26, Method: Composition-based stats. Identities = 46/269 (17%), Positives = 90/269 (33%), Gaps = 27/269 (10%) Query: 88 AVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRKHTP------SSAIQFLTS 139 + + + I ++ D D +I + + + + ++ + L+S Sbjct: 23 KAAYQRDIQEFIMYIREQAIDSFEDVDRIVVMNYIAFLRDKGGKGYSGMKNTTIARKLSS 82 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRLA 195 +R + + +A NP + + PK ++++ F + G + R Sbjct: 83 LRSFYHYLNEYIGIANNPFVYFKTPKIAKRIPEFLFYDEIEIFLESFDLNSMQGLRDRTM 142 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLL-------- 245 FE + GLR S++ + + +NI I K V D +LL Sbjct: 143 FELMYACGLRVSEAVSLRTRDVDFADNILHIH-GKGDKERLVPFYDLAKELLVSYIKDVR 201 Query: 246 AMTPIGKET-FFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGA 302 + ET F+N +K+ K ++ H R AT D GA Sbjct: 202 DVWATSDETALFVNQRGKKLTTRGVQYLMNKAVEKCDLHVHVHPHMFRHSFATHLLDNGA 261 Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRL 331 + G ++ + Y + RL Sbjct: 262 DLRYVQELLGHSSLSTTQIYVH-VSKERL 289 >gi|126435536|ref|YP_001071227.1| site-specific tyrosine recombinase XerD [Mycobacterium sp. JLS] gi|126235336|gb|ABN98736.1| tyrosine recombinase XerD subunit [Mycobacterium sp. JLS] Length = 318 Score = 123 bits (310), Expect = 3e-26, Method: Composition-based stats. Identities = 44/274 (16%), Positives = 92/274 (33%), Gaps = 35/274 (12%) Query: 85 GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGV----------ESRKHTPS 131 +A N+ S+ + G D K+T + + ++ + Sbjct: 26 RGVAANTLSSYRRDLRRYSEHLTGRGVEDLAKVTESDVSDFLVALRRGDPDTGAQALSAV 85 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF--------K 183 SA + L ++R L ++A + ++ +V+ P + + +++ + Sbjct: 86 SAARALIAVRGLHRFATAEGLTDVDVARAVKPPTPGRRLPKSLSIDEVLALLDGAGGDSE 145 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFM 242 + + R E L +G R S++ + + + + K G V + + Sbjct: 146 ADGPLTLRNRALLELLYSTGARISEAVGLDIDDVDTHARSVLLRGKGGKQRLVPIGRPAV 205 Query: 243 KLL-----------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGV 289 L A G F+N +++ + A +AG+ S H + Sbjct: 206 SALDAYLVRGRPDLARRGRGTPAIFLNARGGRLSRQSAWQVLQDAADRAGITSAVSPHTL 265 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYT 323 R AT D GA + G +V + YT Sbjct: 266 RHSFATHLLDGGADVRVVQELLGHASVTTTQIYT 299 >gi|298253366|ref|ZP_06977158.1| site-specific recombinase XerD [Gardnerella vaginalis 5-1] gi|297532761|gb|EFH71647.1| site-specific recombinase XerD [Gardnerella vaginalis 5-1] Length = 322 Score = 123 bits (310), Expect = 3e-26, Method: Composition-based stats. Identities = 56/285 (19%), Positives = 102/285 (35%), Gaps = 34/285 (11%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIRSGV--ESRK 127 LI +Y L ++ ++ S + G + ++TT +RS + ESR Sbjct: 21 LIDDYIDYVRANKGLGERTQKAYASDILQCLAWCNRHGFNNISELTTDDLRSWMADESRS 80 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF----- 182 H SS + + ++R F W EY++ NP + PK K + + Sbjct: 81 HARSSLARKVVAVRGFFAWCQHVEYISGNPAEILMTPKIKNMLPSVLDEYQAESLMNNVD 140 Query: 183 ----------KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGT 231 K+ + G + E L +G+R + +Q + + +IK T K Sbjct: 141 SKANVSTSCPKNQKAVGLRNAAILELLYATGIRVGELTSLNIQDINFSSHTIKVTGKGNK 200 Query: 232 IITVELPDGFMKLLAMTPIGK-----------ETFFINNDKQKMNATQFSIWFKAKATKA 280 V K L+ E F+ ++++ +A A Sbjct: 201 QRVVPFGVPAYKALSAWISKDGREILLRNSVEEAVFLGTRGKRIDQRLVRQIVHDEAKSA 260 Query: 281 GV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 V + S H +R +AT + GA E+ G +++ + YT Sbjct: 261 HVPDISPHALRHSAATHMLNGGADLREVQELLGHSSLNTTQRYTH 305 >gi|262383756|ref|ZP_06076892.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_33B] gi|298375888|ref|ZP_06985844.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_19] gi|262294654|gb|EEY82586.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_33B] gi|298266925|gb|EFI08582.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_19] Length = 302 Score = 123 bits (310), Expect = 3e-26, Method: Composition-based stats. Identities = 53/276 (19%), Positives = 103/276 (37%), Gaps = 25/276 (9%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS-----GDFDYRKITTKHIRSGV---E 124 LI ++ + + + + ++ DQ R G FD +I + +RS + Sbjct: 2 LIDDFLNYLRYERNYSNYTIGAYSKDLDQFQRYVREHREGVFDPGEIDSDFVRSWIVSLM 61 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 K +P S + L+S++ FK+ +++ V+ NP V PK K +++ Sbjct: 62 DEKLSPVSVNRKLSSLKSFFKFLMKRGIVSANPLRLVSGPKTKKPLPYFIKDSELEALLD 121 Query: 185 FWS-----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELP 238 EG + RL E L +G+R S+ + +K T K + Sbjct: 122 GDGFDEDFEGVRNRLVIEMLYDTGMRRSELIGIRNVDVDYEAMQVKVTGKRNKQRLIPFA 181 Query: 239 DGFMKLLAMTP--------IGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHG 288 +G L+ E FF+ + +++ K + ++ + +S H Sbjct: 182 EGLKNLMLAYTEVRDREVEAAGEWFFVRKNGNQLSTGIVYNIVKKQLSEIPMLAKRSPHV 241 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 +R AT + GA + + G ++ YT Sbjct: 242 LRHSFATSMLNNGAELNAVKDLLGHSSLASTSVYTH 277 >gi|206889353|ref|YP_002249196.1| tyrosine recombinase XerC [Thermodesulfovibrio yellowstonii DSM 11347] gi|254799359|sp|B5YFZ8|XERC_THEYD RecName: Full=Tyrosine recombinase xerC gi|206741291|gb|ACI20348.1| tyrosine recombinase XerC [Thermodesulfovibrio yellowstonii DSM 11347] Length = 301 Score = 123 bits (310), Expect = 3e-26, Method: Composition-based stats. Identities = 47/259 (18%), Positives = 94/259 (36%), Gaps = 22/259 (8%) Query: 88 AVNSRISFESYFDQII--RKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFK 145 + ++ ++++ ++ K I + S + + ++ + L+++R F Sbjct: 22 SSHTLRAYKNDLEEFFNFAKVEPEKVEPIVIRGFISEQILKGKSKTTVARKLSTLRSFFS 81 Query: 146 WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG----SQPRLAFEFLLY 201 + + ++ INP V K K + T +D + SE + + E Sbjct: 82 YLYSEGFIKINPARVVSSVKIKRALPKFLTVDDAFKLVEAPSEDKFTVQRDKAILELFYS 141 Query: 202 SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-----ELPDGFMKLLAMTPI------ 250 SG+R S+ C ++ L IK + G + + + K LA+ I Sbjct: 142 SGIRVSELCGLNLEDLDLKEGLIKVRGKGKKERIVPVGQKAKEALKKYLAIRQILRIKKK 201 Query: 251 ---GKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAH 305 + FINN Q+++ Q + A GV H +R A+ GA Sbjct: 202 LSLDETPLFINNRGQRISDRQVRRIVEKYAKFIGVLEKIGPHTLRHTFASHLLMEGADLR 261 Query: 306 ELMATYGWKTVDQAETYTK 324 + G ++ + YT Sbjct: 262 VIQELLGHASLSTTQIYTH 280 >gi|329929830|ref|ZP_08283506.1| phage integrase, N-terminal SAM domain protein [Paenibacillus sp. HGF5] gi|328935808|gb|EGG32269.1| phage integrase, N-terminal SAM domain protein [Paenibacillus sp. HGF5] Length = 294 Score = 123 bits (310), Expect = 3e-26, Method: Composition-based stats. Identities = 41/270 (15%), Positives = 96/270 (35%), Gaps = 25/270 (9%) Query: 76 SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH------IRSGVESRKHT 129 +Y + L+ ++ S+ + + + + + + + + Sbjct: 9 VQYLE--DEKGLSRSTIASYRADLQGFLAFAAEREVTHPREVNRTLLGLYVGRLRQQGKA 66 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 SS ++ S+R F++ VRQ + +P ++ PK + + + T E + + S G Sbjct: 67 ASSLLRCTASLRSFFQYLVRQAVIVQDPTQLLDNPKPERKPPKSLTVEQVDKLLSAPDSG 126 Query: 190 S----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-KTGTIITVELPDGFMKL 244 + + + E L SG++ S+ V +Q + ++ G + + + Sbjct: 127 TPQGARDKAMLELLYASGIKVSELVNLSVHDIQLEMRFLRCAVSGGKERILPITPIAAES 186 Query: 245 LA----------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKF 292 +A M G++ F+N+ ++ F K A +++ + H +R Sbjct: 187 VALYVRDMRDKLMRDAGEDALFLNSLGTRLTRQGFWKIIKKYGKLADIDEDITPHTLRHS 246 Query: 293 SATISADAGATAHELMATYGWKTVDQAETY 322 A GA + G + Y Sbjct: 247 FAMHLLGNGADLRSVQEMLGHSALSTTGMY 276 >gi|289523581|ref|ZP_06440435.1| integrase/recombinase XerD [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503273|gb|EFD24437.1| integrase/recombinase XerD [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 297 Score = 123 bits (310), Expect = 3e-26, Method: Composition-based stats. Identities = 50/262 (19%), Positives = 94/262 (35%), Gaps = 15/262 (5%) Query: 77 EYRK--SAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH---TPS 131 EY K S + +N + + D +I + G + KI HIR+ + + S Sbjct: 14 EYLKYVSGRTDNTVINYAVDLSQFVDYVISQ-GVEEVEKIEQAHIRAFLRELAAYGYSKS 72 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS- 190 S ++ L+S+R + ++ + +P V PK R ED++ G Sbjct: 73 SVLRKLSSLRSWTNFLLQSGKLTSDPTKGVRGPKEPKRLPRALAYEDVKMMLENGPNGEF 132 Query: 191 --QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFMKLLAM 247 + R E L GLR ++ + + ++ + G V + K L Sbjct: 133 EIRDRAILELLYGCGLRVAELVALDWEDVDIEERWLRVKGKGEKERLVPMGRHAQKALRE 192 Query: 248 TPIG----KETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGA 302 + F + +++ A + G+ S H +R AT + GA Sbjct: 193 WQVFLGKLSGPLFPGDGCERIAVRTVHRVVSRAAKRVGLAGVSPHMLRHSFATHMLEGGA 252 Query: 303 TAHELMATYGWKTVDQAETYTK 324 + L G +++ + Y K Sbjct: 253 SLRVLQELLGHQSLVTTQRYLK 274 >gi|183982521|ref|YP_001850812.1| integrase/recombinase, XerD [Mycobacterium marinum M] gi|183175847|gb|ACC40957.1| integrase/recombinase, XerD [Mycobacterium marinum M] Length = 313 Score = 123 bits (310), Expect = 3e-26, Method: Composition-based stats. Identities = 46/274 (16%), Positives = 87/274 (31%), Gaps = 35/274 (12%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH----IRSGVESRKHTPSS-------- 132 +A N+ S+ + + D + V R+ P S Sbjct: 21 RGVAANTLSSYRRDLRRYSKHLEDRGITDLAKVGEDDVSEFLVALRRGDPESGVLGLSAV 80 Query: 133 -AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----- 186 A + L ++R L ++A + A++ +V P + T +++ Sbjct: 81 SAARALIAVRGLHRFAAAEGLAALDVARAVRPPTPGRRLPKSLTIDEVLALLEGAGGDNP 140 Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFM 242 + R E L +G R S++ V + + K G V + + Sbjct: 141 ADGPLTLRNRALLELLYSTGSRISEAVGLDVDDIDTQARTVLLQGKGGKQRLVPVGRPAV 200 Query: 243 KLL-----------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGV 289 + L A G F+N +++ + A +AG+ S H + Sbjct: 201 QALDAYLVRGRPELARRGRGTPAIFLNARGGRLSRQSAWQVLQDAAERAGITSGVSPHML 260 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYT 323 R AT + GA + G +V + YT Sbjct: 261 RHSFATHLLEGGADVRVVQELLGHASVTTTQIYT 294 >gi|239993652|ref|ZP_04714176.1| tyrosine recombinase [Alteromonas macleodii ATCC 27126] Length = 306 Score = 123 bits (310), Expect = 3e-26, Method: Composition-based stats. Identities = 45/262 (17%), Positives = 101/262 (38%), Gaps = 23/262 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK---HTPSSAIQFLTSMR 141 L++++ +++ ++ + G +++ +T I+ + K H+P S L+++R Sbjct: 26 RGLSLHTIKNYQRQLTEVAKLLGLYEWSGLTPSDIKRVMADAKMSGHSPRSIALRLSALR 85 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS------EGSQPR-- 193 ++ + + + NP ++ PK+ + + ++MQQ + EG Q R Sbjct: 86 TFCQYLIDHQQLFSNPVEGIQAPKQGKPLPKQLSVDEMQQLLNASPRSSDDDEGMQLRDV 145 Query: 194 LAFEFLLYSGLRCSDSCRAGVQH-LQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGK 252 FE L GLR S+ + L++ + K + L K L + Sbjct: 146 AMFELLYGCGLRLSELTGLNLADCLKDGTVKVM-GKGSKQRILPLGRHAQKALNAWLKVR 204 Query: 253 ETF--------FINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGA 302 + F++ K +++ Q + A++ + S H +R AT ++ Sbjct: 205 PAYASPYESAVFVSKRKTRISNRQVANRLDKMASEQSLSQKVSPHKLRHSFATHVLESSG 264 Query: 303 TAHELMATYGWKTVDQAETYTK 324 + G + + YT Sbjct: 265 DLRAVQELLGHANLSTTQVYTH 286 >gi|322806579|emb|CBZ04148.1| integrase/recombinase (XerC/CodV family) [Clostridium botulinum H04402 065] Length = 330 Score = 123 bits (310), Expect = 3e-26, Method: Composition-based stats. Identities = 47/258 (18%), Positives = 86/258 (33%), Gaps = 13/258 (5%) Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPSSAIQ 135 Y + L+ + ++E I I T +R + R +S Sbjct: 61 YLATKKLDGLSRKTLKNYECNL-LIFADHLRKPLSTINTMDLRMFLTVRCKSMKATSVNG 119 Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA 195 ++ ++ F W +EY+ NP +++ K +P T+E+++ + + Sbjct: 120 QISILKSFFGWLHEEEYIPKNPAKKLKQTKEPKRVRKPLTEEEIELLRQSCKT-DREEAL 178 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELP----DGFMKLLAMTPI 250 EFL+ +G R S+ + + S K V K L Sbjct: 179 IEFLISTGCRLSEIVEVNKDDINWHEMSLFVVGKGDKERKVYFSTKAKILLKKYLLTRAD 238 Query: 251 GKETFFINNDKQKMNATQFSIW--FKAKATKAGVNKS--AHGVRKFSATISADAGATAHE 306 E F+ + SI K A AG+ KS H R AT ++G Sbjct: 239 NNEALFVTSRSPHNRLGGRSIQREIKKIANMAGIEKSIHPHLFRHSFATYKINSGMPMPI 298 Query: 307 LMATYGWKTVDQAETYTK 324 + G ++ + Y + Sbjct: 299 IQHLMGHESPATTQIYAQ 316 >gi|323491144|ref|ZP_08096332.1| phage integrase family protein [Vibrio brasiliensis LMG 20546] gi|323314609|gb|EGA67685.1| phage integrase family protein [Vibrio brasiliensis LMG 20546] Length = 345 Score = 123 bits (310), Expect = 3e-26, Method: Composition-based stats. Identities = 57/319 (17%), Positives = 117/319 (36%), Gaps = 17/319 (5%) Query: 16 TRHGKIIYYFRK---GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72 R GK +R G+RI +P + + + + L + + + Sbjct: 6 VRKGKKKTTYRVQFMRDGQRISKSFPTKKS-AEKFAALLVVDDDFSHSMTNQTLNSFLVS 64 Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE--SRKHTP 130 I EY + +++ R+S+ G K+T + +++ + ++ P Sbjct: 65 DAIDEYLQQYKGKDVSLAQRLSY------WSAAFGSIAVGKVTRQKVKAELRGLLKRCAP 118 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 S+ ++ ++ L+++ + + + NP + R + E++++ S S Sbjct: 119 STVNRYKAALGTLYRYLLHEYDIDHNPTKGIPLLTENNARTRYLSDEEIERLLSACRHSS 178 Query: 191 QPRLAFEFLLY--SGLRCSDSCRAGVQ--HLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246 +L LL +G R S+ + +L+ + T K G + L + L Sbjct: 179 WNQLFLLVLLAITTGARRSELLTCRWESINLKTRTIHLSTTKNGEQRLLTLTHEAVTELM 238 Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAH 305 F + M F +K TKA ++ H +R A+I A GA+ Sbjct: 239 KYRRSSGYLFPCPELPAMYFKNFDYHWKEALTKAHIHSFRFHDLRHTCASILAMNGASLL 298 Query: 306 ELMATYGWKTVDQAETYTK 324 E+ G KT+ + Y Sbjct: 299 EIKQVLGHKTIAMTQRYAH 317 >gi|296133056|ref|YP_003640303.1| tyrosine recombinase XerC [Thermincola sp. JR] gi|296031634|gb|ADG82402.1| tyrosine recombinase XerC [Thermincola potens JR] Length = 302 Score = 123 bits (310), Expect = 3e-26, Method: Composition-based stats. Identities = 48/270 (17%), Positives = 95/270 (35%), Gaps = 30/270 (11%) Query: 85 GSLAVNSRISFESYF----DQIIRKSGDFD-------YRKITTKHIRSGVESRKHTPSSA 133 + + + S+++ D I + + + + ++ R + S+ Sbjct: 16 KNASEKTLQSYQTDLFQMVDFISAEINITPENLQPDRVDHLVIRKFLAELQRRGLSRSTI 75 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----QQFKSFWSEG 189 + L +MR F++ R+E + NP + V PK + + ++D+ + + G Sbjct: 76 ARKLAAMRTFFRFLCREEVITRNPLIEVATPKVEKRLPQFLYQDDIRNLIEAPERNTPRG 135 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-------------E 236 + R E L SG+R S+ + + N ++ G V Sbjct: 136 LRDRAILETLYASGIRVSELVNLDMTDIDLNTGYVRVMGKGAKERVVPLGQFAINALKAY 195 Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSA 294 L G +L + E F+N Q+++ K + + S H +R A Sbjct: 196 LTHGRTRLACRSKEPSEAVFLNKAGQRISVRSIRDIVNKYVRKISIRQRVSPHIIRHSFA 255 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTK 324 T DAGA + G + + YT Sbjct: 256 THLLDAGADLRTVQELLGHVKMSTTQIYTH 285 >gi|328948451|ref|YP_004365788.1| Tyrosine recombinase xerC [Treponema succinifaciens DSM 2489] gi|328448775|gb|AEB14491.1| Tyrosine recombinase xerC [Treponema succinifaciens DSM 2489] Length = 297 Score = 123 bits (310), Expect = 3e-26, Method: Composition-based stats. Identities = 44/257 (17%), Positives = 88/257 (34%), Gaps = 21/257 (8%) Query: 99 FDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS---SAIQFLTSMRVLFKWAVRQEYVAI 155 D + + + K+T + + RK + + + L+++R+ + VR++ Sbjct: 36 LDYLEKN--ETPLEKVTVQSLLYYTAFRKTSGRKEITLAKDLSALRIFGSFLVRKKIWIE 93 Query: 156 NPCLSVERPKRKTEGIRPWTKEDMQQFKS----FWSEGSQPRLAFEFLLYSGLRCSDSCR 211 N + +PK + E + + G + R +E + GLR S++C Sbjct: 94 NFAHEIGKPKVSRALPKVLEVEQVDSLLASIDVKKPLGIRDRALYEVIYSCGLRISEACS 153 Query: 212 AGVQHLQ-NNIFSIKTQKTGTIITVELPD----GFMKLL---AMTPIGKETF---FINND 260 + ++ + + K V + K + +G F+N+ Sbjct: 154 LLIANVHFDENLILVRGKGSKERLVPFGEDAAFWLKKWIFEIRPGFVGSRIIPEVFVNSK 213 Query: 261 KQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320 ++ FKA K G+ H +R AT GA + G + + Sbjct: 214 GNPISRKGIWKNFKAMGKKTGIEAKVHTLRHSFATHLLSGGADLRSVQELLGHSDLSTTQ 273 Query: 321 TYTKGADRIRLGIKNSR 337 YT D RL + Sbjct: 274 IYTHIDD-SRLEESHRD 289 >gi|273810420|ref|YP_003344891.1| integrase [Xylella phage Xfas53] gi|257097795|gb|ACV41101.1| integrase [Xylella phage Xfas53] Length = 339 Score = 123 bits (310), Expect = 3e-26, Method: Composition-based stats. Identities = 61/332 (18%), Positives = 111/332 (33%), Gaps = 26/332 (7%) Query: 7 LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66 +P F + + + G + YY+ G R P Y A+ + E+ Sbjct: 11 IPRFRVRPQ-KSGVVYYYYDHGGKPRKETPLG------RDYGLAI-KRWAELEHAQITPA 62 Query: 67 KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVE 124 T + + YR + A N++ +++ D + I +IR ++ Sbjct: 63 IAVTFRHVAERYRAEVI-PTKAYNTQRVEHRCLAPLLKFFDDPPAPFEAIKPVNIRQYLD 121 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVA-INPCLSVERPKRKTEGIRPWTKEDMQQFK 183 R A + ++ L+ WA + NPC + R K + ED Sbjct: 122 WRTSKV-IANREVSVFSHLWNWARSKGITDLPNPCGGIRRNKATGRNVYI---EDTTYHA 177 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243 + + R A + +G R SD +H+ N I KTG + + + Sbjct: 178 VYQAADQTLRDAMDLAYLTGQRVSDVVSMDERHIVNGALEICQAKTGAKLAITVTGELAV 237 Query: 244 LLAMTPIGKE-------TFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKFS 293 L+ K ++ + +++ T F AG+ K +R + Sbjct: 238 LIKRIFDRKRGMKLRSTRLIVDAEGLELSRTGLRYRFDKARAAAGIAKEVFQFRDLRAKA 297 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKG 325 AT AD + A G +V E Y + Sbjct: 298 ATDKADLAGDIRQAQAQLGHASVTMTEHYVRK 329 >gi|329942671|ref|ZP_08291450.1| phage integrase, N-terminal SAM-like domain protein [Chlamydophila psittaci Cal10] gi|313847852|emb|CBY16846.1| putative integrase/recombinase [Chlamydophila psittaci RD1] gi|325506606|gb|ADZ18244.1| site-specific tyrosine recombinase [Chlamydophila psittaci 6BC] gi|328814931|gb|EGF84920.1| phage integrase, N-terminal SAM-like domain protein [Chlamydophila psittaci Cal10] gi|328914512|gb|AEB55345.1| site-specific recombinase, phage integrase family [Chlamydophila psittaci 6BC] Length = 312 Score = 123 bits (310), Expect = 3e-26, Method: Composition-based stats. Identities = 42/243 (17%), Positives = 92/243 (37%), Gaps = 23/243 (9%) Query: 103 IRKSGDFDYRKITTKHIR----SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPC 158 R+ + + +T +R ++ K + + L++++ ++ V+ + +P Sbjct: 55 ERQEAELPFSLLTKDAVRLYILKLMQENKAK-RTIKRRLSAIKSFSQYCVKHRILPEDPT 113 Query: 159 LSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRA-G 213 +++ P+ E P T E ++ + G + R E SGLR S+ Sbjct: 114 ETIQGPRLPKELPSPITYEQVEILMATPDLSKYTGFRDRCLLELFYSSGLRISEIVAINH 173 Query: 214 VQ-HLQNNIFSIKTQKTGTIITVELPDGFMKLL-------AMTPIGKET--FFINNDKQK 263 +++ I+ K V + + L A T I K++ F+N ++ Sbjct: 174 WDIDFTSHLIRIR-GKGKKERLVPMTPHAAQWLQQYLTHPARTGIEKDSQAIFLNRFGKR 232 Query: 264 MNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321 + F+ ++G+ N + H +R AT + G + A G +++ Sbjct: 233 LTTRSIDRKFQKYLRQSGLSGNITPHTIRHTIATHWLENGMDLKTIQALLGHSSLETTTI 292 Query: 322 YTK 324 YT Sbjct: 293 YTH 295 >gi|255014711|ref|ZP_05286837.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_7] Length = 302 Score = 123 bits (310), Expect = 3e-26, Method: Composition-based stats. Identities = 52/276 (18%), Positives = 103/276 (37%), Gaps = 25/276 (9%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS-----GDFDYRKITTKHIRSGV---E 124 LI ++ + + + + ++ DQ R G F+ +I + +RS + Sbjct: 2 LIDDFLNYLRYERNYSNYTIGAYSKDLDQFQRYVREHREGVFNPGEIDSDFVRSWIVSLM 61 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 K +P S + L+S++ FK+ +++ V+ NP V PK K +++ Sbjct: 62 DEKLSPVSVNRKLSSLKSFFKFLMKRGIVSANPLRLVSGPKTKKPLPYFIKDSELEALLD 121 Query: 185 FWS-----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELP 238 EG + RL E L +G+R S+ + +K T K + Sbjct: 122 GDGFDEDFEGVRNRLVIEMLYDTGMRRSELIGIRNVDVDYEAMQVKVTGKRNKQRLIPFA 181 Query: 239 DGFMKLLAMTP--------IGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHG 288 +G L+ E FF+ + +++ K + ++ + +S H Sbjct: 182 EGLKNLMLAYTEVRDREVEAAGEWFFVRKNGNQLSTGIVYNIVKKQLSEIPMLAKRSPHV 241 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 +R AT + GA + + G ++ YT Sbjct: 242 LRHSFATSMLNNGAELNTVKDLLGHSSLASTSVYTH 277 >gi|56420265|ref|YP_147583.1| integrase/recombinase [Geobacillus kaustophilus HTA426] gi|56380107|dbj|BAD76015.1| integrase/recombinase [Geobacillus kaustophilus HTA426] Length = 301 Score = 123 bits (310), Expect = 3e-26, Method: Composition-based stats. Identities = 43/295 (14%), Positives = 109/295 (36%), Gaps = 30/295 (10%) Query: 71 LKWLISEYRKSAH-WGSLAVNSRISFE---SYFDQIIRKSG-DFDYRKITTKHIRSGVES 125 + I E+ + ++N+ + F+ + + G IT H+R ++ Sbjct: 3 FRQAIDEFVLYLQIEKNYSLNTVDGYAYDLRCFENFLIQHGYSVQLHDITKTHVRRFIQH 62 Query: 126 R----KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 + P + + ++ ++ K+ V++ + + + ++ PK ++ + ++++ Sbjct: 63 QITKENVKPRTIYRRISCLKSFSKYCVKENLIDSDFMIGIDTPKTDSKLPTYMSLSELRK 122 Query: 182 FKSFWSE-----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITV 235 F + + L F+ L +G+R S+ + + + +I+ K + Sbjct: 123 LFHFLEQDNSRMAMRNHLLFKLLATTGMRRSEIVELTWEQIDLSNNTIRIYGKGKKERLL 182 Query: 236 ELPDGFMKLLAM--------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---K 284 L + L+ + F+N + +K+N FK KAG+ Sbjct: 183 PLHPMVVPLIKSYMESLEEYQLHPSQPVFLNKNGKKLNPRGLHKIFKEILQKAGLPPQRF 242 Query: 285 SAHGVRKFSATISADAGA---TAHELMATYGWKTVDQAETYTK-GADRIRLGIKN 335 S H +R AT+ + G +++ + YT ++ + I+ Sbjct: 243 SLHHLRHTFATLLIQENKENVDLRTVQELLGHESLVTTQVYTHVDFEQKKKAIET 297 >gi|302035678|ref|YP_003796000.1| phage integrase [Candidatus Nitrospira defluvii] gi|300603742|emb|CBK40074.1| Phage integrase [Candidatus Nitrospira defluvii] Length = 373 Score = 123 bits (310), Expect = 3e-26, Method: Composition-based stats. Identities = 64/322 (19%), Positives = 114/322 (35%), Gaps = 19/322 (5%) Query: 16 TRHGKIIYYFRKGHGRRIRLPYPHES--TFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73 + G I + G+RIR S A M+ + + +Y ++ T Sbjct: 4 VKRGNIWWMNIVFQGKRIR-RSTGSSNRALADAIMAKVKVQLIEGQYFERAEEQSRTFAE 62 Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT---P 130 L+ + + + + SR + +++ + GD +IT K I R T P Sbjct: 63 LMDRFERE---HLVKLASRQTGQAFLKRFRAFFGDRTLAEITPKLIVEYKSRRSATGVKP 119 Query: 131 SSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 +S + LT +R F A R+ E+ NP V K T+ R +++ + Sbjct: 120 ASINRELTCLRKAFSLAKREWEWCRDNPVSRVSLEKGATKRDRWLMEDEEARLLDACPSW 179 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAM 247 + + F L+SG+R + + ++ K TV L M LL Sbjct: 180 LRELVVF--ALHSGMRLGEILSLTWNGVDLFRRTATVFESKNEERRTVPLNQTVMALLTE 237 Query: 248 TP----IGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGA 302 I F + +++ + KAG+ N H +R AT AG Sbjct: 238 KAKVRHIKTALVFPSLAGTRLDPNHLRRALRPAMAKAGIVNCHFHDLRHTFATRLVQAGV 297 Query: 303 TAHELMATYGWKTVDQAETYTK 324 +++ G K+ + Y Sbjct: 298 DLYKVQRLLGHKSPLMTQRYAH 319 >gi|330444332|ref|YP_004377318.1| site-specific recombinase, phage integrase family [Chlamydophila pecorum E58] gi|328807442|gb|AEB41615.1| site-specific recombinase, phage integrase family [Chlamydophila pecorum E58] Length = 312 Score = 123 bits (310), Expect = 3e-26, Method: Composition-based stats. Identities = 40/288 (13%), Positives = 97/288 (33%), Gaps = 40/288 (13%) Query: 77 EYRKSAHWGSLAVNSRISFESYFDQIIRKSG---------------------DFDYRKIT 115 + S S+++++ ++ F + D +T Sbjct: 7 SFLDSLKAKSVSLHTLRNYSIDFSKFKEFIETHKQLPTTPKITLHMKFQETSDLPLSLLT 66 Query: 116 TKHIRSGVE---SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172 IR + + + + + L++++ ++ ++ + + +P +++ PK E Sbjct: 67 KDLIRLYISYLIEQGKSKRTIKRRLSTLKSFSRYCLKMQLLFEDPTENIQGPKLPKELPS 126 Query: 173 PWTKEDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-Q 227 P + E ++ + G + R E SGLR S+ Q + I+ Sbjct: 127 PISYEQVEILMTMPDVSKYTGLRDRCLLELFYSSGLRLSEITAINRQDIDFEAALIRIFG 186 Query: 228 KTGTIITVELPDGFMKLLAM---------TPIGKETFFINNDKQKMNATQFSIWFKAKAT 278 K + + ++ L + FF+N +++ F+ Sbjct: 187 KGKKERVLPVTPCAIRWLHHYLYHSERMSIQKDTQAFFLNRFGTRISPRSIDRKFQHYLQ 246 Query: 279 KAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 +G+ + H +R AT + G + A G +++ YT+ Sbjct: 247 LSGLTGNITPHTIRHTIATHWLENGMDLKTIQALLGHSSLETTTIYTQ 294 >gi|307132969|ref|YP_003884985.1| site-specific tyrosine recombinase [Dickeya dadantii 3937] gi|306530498|gb|ADN00429.1| site-specific tyrosine recombinase [Dickeya dadantii 3937] Length = 302 Score = 123 bits (310), Expect = 3e-26, Method: Composition-based stats. Identities = 44/259 (16%), Positives = 89/259 (34%), Gaps = 19/259 (7%) Query: 85 GSLAVNSRISFESYFDQIIR---KSGDFDYRKITTKHIRSGVESRKH---TPSSAIQFLT 138 L+ ++ S+ II SG D++ + +R+ V K +S Q L+ Sbjct: 22 RQLSPLTQSSYAHQLQVIIDMLSASGIADWQALDAAGVRAVVARGKRDGLNAASLAQRLS 81 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQPRLA 195 ++R W V + + NP V PK + ++M + + R Sbjct: 82 ALRSFLDWLVGRGELKANPARGVPAPKAGRHLPKNMDVDEMSRLLDIDLSDPLAVRDRAM 141 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI--------ITVELPDGFMKLLAM 247 E + +GLR ++ H+ + + G+ V ++ + + Sbjct: 142 LEVMYGAGLRLAELVGLDCGHVDLDSGEVWVMGKGSKERKLPIGATAVTWLRNWLAIRDI 201 Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAH 305 + FI++ ++++ F K GVN H +R AT ++ Sbjct: 202 YAPEDDAIFISSLGKRISMRNVQKRFAEWGVKQGVNSHVHPHKLRHSFATHMLESSGDLR 261 Query: 306 ELMATYGWKTVDQAETYTK 324 + G + + YT Sbjct: 262 AVQELLGHANLSTTQIYTH 280 >gi|265767465|ref|ZP_06095131.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] gi|263252770|gb|EEZ24282.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] Length = 271 Score = 123 bits (310), Expect = 3e-26, Method: Composition-based stats. Identities = 45/225 (20%), Positives = 84/225 (37%), Gaps = 20/225 (8%) Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR--PWTKEDMQQFKSFWSEGS 190 A + + ++A+ + + +PC V K +R + E++Q + E Sbjct: 52 AKSIYQRFKKVIRYAIEHDVILKDPCKEV-ICKVDDPMLRKDVLSLEEIQSLINCHYENE 110 Query: 191 QP--RLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTG-----TIITVELPDGF 241 P R AF F LY GLR D +++ N + + KT + + + L DG Sbjct: 111 NPMVRRAFIFCLYFGLRFCDVKDLTYKNVDYSNKLLKFEQNKTKGHSSASGVVIPLNDGL 170 Query: 242 MKLLAMTPI-GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISA 298 + ++ P G + I + S + +AG++K S H R A Sbjct: 171 LSIIGEAPANGNKDVLIFDL---PTYESCSKSLRRWVKRAGIDKHISWHCARHSFAVNIL 227 Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343 + GA + G + + YT+ D +L + + + Sbjct: 228 NNGANIKTIAGLLGHSGLKHTKKYTRAVD--KLKEEAINSLPELK 270 >gi|163843727|ref|YP_001628131.1| integrase/recombinase [Brucella suis ATCC 23445] gi|163674450|gb|ABY38561.1| Integrase/Recombinase [Brucella suis ATCC 23445] Length = 164 Score = 123 bits (310), Expect = 3e-26, Method: Composition-based stats. Identities = 33/155 (21%), Positives = 58/155 (37%), Gaps = 14/155 (9%) Query: 205 RCSDSCRAGVQH-------LQNN-----IFSIKTQKTGTIITVELPDGFMKLLAMTPIGK 252 R D L F ++ KTG + + + ++L TP Sbjct: 9 RRGDIAALRWDQRCSKTVFLDGEAKSVEGFELRQGKTGKRLLLPITPILSEVLEATPRQG 68 Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMAT 310 ET + + + + A + K + HG+RK I A+ GA+ ++M T Sbjct: 69 ETVLVTAYGEPFSPKSLTGRMADWTASAKLPKGFTLHGLRKTLGKILAEGGASTRQIMDT 128 Query: 311 YGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDS 345 G + AE YT+ A++ RL R+ + + Sbjct: 129 LGHDDIAHAELYTREAEQARLATDGMSRVVRLKRN 163 >gi|110807498|ref|YP_691018.1| site-specific tyrosine recombinase XerC [Shigella flexneri 5 str. 8401] gi|123342340|sp|Q0SZ02|XERC_SHIF8 RecName: Full=Tyrosine recombinase xerC gi|110617046|gb|ABF05713.1| tyrosine recombinase [Shigella flexneri 5 str. 8401] Length = 298 Score = 123 bits (310), Expect = 3e-26, Method: Composition-based stats. Identities = 45/270 (16%), Positives = 95/270 (35%), Gaps = 20/270 (7%) Query: 75 ISEYRKSAH-WGSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIRSGVESRKHTP 130 + Y + L+ + ++++ + II ++G +++ +R+ +H Sbjct: 8 VERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDAAMVRNFAVRSRHKG 67 Query: 131 SSAIQF---LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186 A L+++R F W V Q + NP V PK + +DM + Sbjct: 68 LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDIDI 127 Query: 187 --SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT--------VE 236 + R E + +GLR S+ ++HL + G+ V Sbjct: 128 NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAVA 187 Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSA 294 + ++ L + + F++ ++++A F K G+N H +R A Sbjct: 188 WIEHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRHSFA 247 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTK 324 T ++ + G + + YT Sbjct: 248 THMLESSGDLRGVQELLGHANLSTTQIYTH 277 >gi|332039045|gb|EGI75469.1| tyrosine recombinase XerD subunit [Hylemonella gracilis ATCC 19624] Length = 322 Score = 123 bits (310), Expect = 3e-26, Method: Composition-based stats. Identities = 49/292 (16%), Positives = 92/292 (31%), Gaps = 32/292 (10%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KH 128 + L E S + + + + + + + +R + Sbjct: 21 IDALWLEEGLSRNTLAAYRRDLALYARWLAEPREGKASQTLDASGEPDLNAYFAARHAQT 80 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF--- 185 ++A + LT + F+WAVR+ + +P L + K+ + ++ ++ + Sbjct: 81 RATTANRRLTVFKRYFRWAVRERRIQADPTLRLLSAKQPLRVPKTLSEAQVEALLAAPDA 140 Query: 186 -WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMK 243 G + R E + SGLR S+ + ++ N ++ T K V + Sbjct: 141 ATPLGLRDRAMLELMYASGLRVSELVGLKIFNVGLNEHVLRVTGKGSKERLVPFGEVAAD 200 Query: 244 LLAM------------------TPIGKETFFINNDKQK----MNATQFSIWFKAKATKAG 281 + + F+ + M F K A AG Sbjct: 201 WMRRYLHEARPELLGQVGASPRAAKQTDDLFVTLRGSRAGEAMTRVMFWSLVKKYAVIAG 260 Query: 282 V--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 V S H +R AT + GA + G + YT A R RL Sbjct: 261 VTSPLSPHTLRHAFATHLLNHGADLRAVQMLLGHADISTTTIYTHVA-RERL 311 >gi|229117317|ref|ZP_04246695.1| Tyrosine recombinase xerC [Bacillus cereus Rock1-3] gi|228666217|gb|EEL21681.1| Tyrosine recombinase xerC [Bacillus cereus Rock1-3] Length = 302 Score = 123 bits (310), Expect = 3e-26, Method: Composition-based stats. Identities = 43/272 (15%), Positives = 96/272 (35%), Gaps = 26/272 (9%) Query: 85 GSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIRSGV---ESRKHTPSSAIQFLT 138 + + + S+++ + + + G + +T +R + K S + ++ Sbjct: 21 RNYSKYTIASYQNDLEHFVQFMEREGISSFLDVTYADVRLYLTTLHDEKLARKSVARKVS 80 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRL 194 S+R L+++ +R+ Y NP PK++ + E++++ G + + Sbjct: 81 SLRSLYRFLMREGYRKDNPFALASLPKKELSIPKFLYAEELEELFEVSDMETPLGQRNQA 140 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE------------LPDGF 241 E + +G+R S+ + + + +I K + + +G Sbjct: 141 LLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQRYIPFGSYAQDALITYMENGR 200 Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299 +L T F+N + + KA + S H +R AT D Sbjct: 201 KQLANKTEEQSHMVFLNAKGTPLTSRGVRYVLNELIKKASLTMRISPHMLRHTFATHMLD 260 Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRL 331 GA + G + + + YT + RL Sbjct: 261 EGADLRTVQELLGHENLSTTQIYTH-VSKERL 291 >gi|309781409|ref|ZP_07676145.1| tyrosine recombinase XerD [Ralstonia sp. 5_7_47FAA] gi|308919822|gb|EFP65483.1| tyrosine recombinase XerD [Ralstonia sp. 5_7_47FAA] Length = 311 Score = 123 bits (310), Expect = 3e-26, Method: Composition-based stats. Identities = 49/303 (16%), Positives = 95/303 (31%), Gaps = 26/303 (8%) Query: 51 LTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD 110 + E + P + ++ LA N+ ++ + + Sbjct: 2 RKAARKDAEAPSLPPQSADAIQRFCDALWLED---GLARNTLDAYRRDLTLYAHWLAERN 58 Query: 111 --YRKITTKHIRSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166 + + +R + SSA + T + F+WA+R+ V+ +P + K+ Sbjct: 59 KSIAETEDDDLADYFAARHAESRASSANRRRTVFKRFFQWALREHVVSTDPSRLLPTAKQ 118 Query: 167 KTEGIRPWTKEDMQQFKSF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222 + ++ ++ G + R E + SGLR S+ + N Sbjct: 119 PPRFPKTLSETQVEALIDAPDVDTPLGLRDRAMIELMYASGLRVSEIVALKTVEVGLNEG 178 Query: 223 SIKTQKTGTIITVELP------DGFMKLLAMTPIG------KETFFINNDKQKMNATQFS 270 ++ +P D + L + F+ + M F Sbjct: 179 VVRVVGGKGGKDRLVPFGAEAGDWLRRYLRDGRTALLGERTADALFVTARGEGMTRQAFW 238 Query: 271 IWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 K A A ++ S H +R AT + GA + G + + YT A R Sbjct: 239 YLIKRYALLADIHAPLSPHTLRHAFATHLLNHGADLRVVQMLLGHADISTTQIYTHVA-R 297 Query: 329 IRL 331 RL Sbjct: 298 ERL 300 >gi|323177195|gb|EFZ62785.1| phage integrase family protein [Escherichia coli 1180] Length = 456 Score = 123 bits (310), Expect = 3e-26, Method: Composition-based stats. Identities = 43/258 (16%), Positives = 81/258 (31%), Gaps = 16/258 (6%) Query: 79 RKSAHWGSLAVNSRI-SFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSSAIQF 136 + S + ++ + +++ G I +HIR ++ R + + A Sbjct: 185 QNSPNTQQNEPETKQPEPLQHQKKLLAVFGKVPADSIKPEHIRRYMDKRGEQSKTQANHE 244 Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF 196 +SM ++ W + YV NPC V + K K T ++ Q S +A Sbjct: 245 KSSMSRVYSWGYERGYVKGNPCAGVSKFKAKNRERYV-TDKEYQAVLSVAPL--PVFIAM 301 Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTP--IGKET 254 E R SD + + N+ I+ KTG + Sbjct: 302 EIAYLCAARVSDVLSLKWEQIGNDGIFIQQGKTGKKQIKAWSPRLQAAIEKAKQLPTSAY 361 Query: 255 FFINNDKQKMNATQFSIWFKAKATKAG------VNKSAHGVRKFSATISADAGATAHELM 308 N + F+ + +AG + + H + K + ++ + Sbjct: 362 VISNQYGNRYMYKGFNEMWVEARNRAGKISGILTDFTFHDL-KAKGISDYE--GSSRDKQ 418 Query: 309 ATYGWKTVDQAETYTKGA 326 G KT Q Y + Sbjct: 419 LFSGHKTEGQVLIYDRKV 436 >gi|229098300|ref|ZP_04229247.1| Tyrosine recombinase xerC [Bacillus cereus Rock3-29] gi|228685198|gb|EEL39129.1| Tyrosine recombinase xerC [Bacillus cereus Rock3-29] Length = 302 Score = 123 bits (310), Expect = 3e-26, Method: Composition-based stats. Identities = 43/272 (15%), Positives = 96/272 (35%), Gaps = 26/272 (9%) Query: 85 GSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIRSGV---ESRKHTPSSAIQFLT 138 + + + S+++ + + + G + +T +R + K S + ++ Sbjct: 21 RNYSKYTIASYQNDLEHFVQFMEREGISSFLDVTYADVRLYLTTLHDEKLARKSVARKVS 80 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRL 194 S+R L+++ +R+ Y NP PK++ + E++++ G + + Sbjct: 81 SLRSLYRFLMREGYRKDNPFALASLPKKELSIPKFLYAEELEELFEVSDTETPLGQRNQA 140 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE------------LPDGF 241 E + +G+R S+ + + + +I K + + +G Sbjct: 141 LLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQRYIPFGSYAQDALITYMENGR 200 Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299 +L T F+N + + KA + S H +R AT D Sbjct: 201 KQLANKTEEQSHMVFLNAKGTPLTSRGVRYVLNELIKKASLTMRISPHMLRHTFATHMLD 260 Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRL 331 GA + G + + + YT + RL Sbjct: 261 EGADLRTVQELLGHENLSTTQIYTH-VSKERL 291 >gi|23502343|ref|NP_698470.1| phage integrase family site specific recombinase [Brucella suis 1330] gi|23348323|gb|AAN30385.1| site-specific recombinase, phage integrase family [Brucella suis 1330] Length = 164 Score = 123 bits (310), Expect = 3e-26, Method: Composition-based stats. Identities = 33/155 (21%), Positives = 59/155 (38%), Gaps = 14/155 (9%) Query: 205 RCSDSCRAGVQH-------LQN-----NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGK 252 R D L + F ++ KTG + + + ++L TP Sbjct: 9 RRGDIAALRWDQRCSKTVFLDGEAKSVDGFELRQGKTGKRLLLPITPILSEVLEATPRQG 68 Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMAT 310 ET + + + + A + K + HG+RK I A+ GA+ ++M T Sbjct: 69 ETVLVTAYGEPFSPKSLTGRMADWTPSAKLPKGFTLHGLRKTLGKILAEGGASTRQIMDT 128 Query: 311 YGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDS 345 G + AE YT+ A++ RL R+ + + Sbjct: 129 LGHDDIAHAELYTREAEQARLATDGMSRVVRLKRN 163 >gi|16519918|ref|NP_444038.1| DNA integration/recombination/inversion protein [Sinorhizobium fredii NGR234] gi|2497415|sp|P55632|Y4QK_RHISN RecName: Full=Putative integrase/recombinase y4qK gi|2182597|gb|AAB92466.1| DNA integration/recombination/inversion protein [Sinorhizobium fredii NGR234] Length = 308 Score = 123 bits (310), Expect = 3e-26, Method: Composition-based stats. Identities = 41/269 (15%), Positives = 90/269 (33%), Gaps = 25/269 (9%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHT 129 L + + ++N+++S+ R G + + IR+ +K Sbjct: 20 LRQRMSEDMQVRNFSLNTQLSYLRQVSLFARHFGKAP-DLLGREDIRTYQVYLANEKKLA 78 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 P+S + ++R F + +++V P + PK+ + + +++Q F Sbjct: 79 PNSIHIAIAALRFFFSVTLERDWV---PAEVLPLPKKPQKLPIILSPDEVQHFLG-CVLD 134 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLLA- 246 + +GLR S++ + + + ++ K V L +++L Sbjct: 135 LKHHAILTTCYAAGLRISEAVQLKPTDIDSQRMVVRVEQGKGQKDRYVMLSPKLLEILRD 194 Query: 247 --MTPIGKETFFINND-KQKMNATQFSIWFKAKATKA------GVNKSAHGVRKFSATIS 297 P KE F + + KA + H +R A Sbjct: 195 YWRMPRPKEWLFPGDRAGHPITRDAVG----QACAKAHDLSRLSKPVTPHSLRHAFAVHL 250 Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGA 326 +AGA + G +++ Y + A Sbjct: 251 LEAGADVRTIQLLLGHRSLATTAHYLRIA 279 >gi|260894011|ref|YP_003240105.1| integrase family protein [Ammonifex degensii KC4] gi|260866150|gb|ACX53255.1| integrase family protein [Ammonifex degensii KC4] Length = 288 Score = 123 bits (309), Expect = 3e-26, Method: Composition-based stats. Identities = 44/258 (17%), Positives = 89/258 (34%), Gaps = 18/258 (6%) Query: 85 GSLAVNSRISFESYFDQII--------RKSGDFDYRKITTKHIRSGVESRKHTPSSAIQF 136 L+ +S ++ + + + R + R P++ Sbjct: 15 RGLSPSSVRAYLGVVRRFVAWWEGTSGEAFDPRAVTPLDVADYRRYLRGRGLKPATVNFN 74 Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF-KSFWSEGS-QPRL 194 L +++ F+W + + NP V++ R T+ ++ ++ G+ + R Sbjct: 75 LEAVKSFFRWLKEERALPDNPAEGVKKVPEVKPSPRWLTRREVGLLARAVQRYGTVKDRA 134 Query: 195 AFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVELP----DGFMKLLA 246 F LL++GLR S++ ++ + ++ ++ K G V L + LA Sbjct: 135 LFALLLHAGLRVSEAVSLRLEDVVVRERSGFVRVRYGKGGKYREVPLNVTVRRVLKEYLA 194 Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHE 306 P + K M K AGV + H +R DAG + + Sbjct: 195 ELPPQGGGWLFPGKKGPMTPRAVQKRLKFFGRIAGVEVTPHKLRHTFCKWLIDAGESLDK 254 Query: 307 LMATYGWKTVDQAETYTK 324 + G +D YT+ Sbjct: 255 VALLAGHARLDTTAVYTR 272 >gi|152981264|ref|YP_001354893.1| site specific integrase/recombinase protein [Janthinobacterium sp. Marseille] gi|151281341|gb|ABR89751.1| site specific integrase/recombinase protein [Janthinobacterium sp. Marseille] Length = 319 Score = 123 bits (309), Expect = 3e-26, Method: Composition-based stats. Identities = 51/303 (16%), Positives = 96/303 (31%), Gaps = 47/303 (15%) Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD-------YRKITTKHIRS 121 L LIS+ LA + +S+ +++ + D + + Sbjct: 12 GYLDNLISQ-------RQLAPLTTVSYRRDLLELLAFATASDSKATLTGVTHFQIRKFAA 64 Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 + ++ S + L++ R F W Q + NP ++ PKR + +D + Sbjct: 65 QLHAQGLNARSIARKLSAWRGFFTWLSEQNAITSNPVDGIKAPKRSKPLPKALAADDAVR 124 Query: 182 FKSFWSEGSQP--------RLAFEFLLYSGLRCSDSCRA-------------GVQHLQNN 220 + + G FE L SGLR S+ G + Sbjct: 125 LVAEHAPGKSADSAMQLCNHAMFELLYSSGLRVSELVGLDVRYAQEARYTSAGWIDFDAH 184 Query: 221 IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET--------FFINNDKQKMNATQFSIW 272 + T K + TV + M L ++T F++ +++A + Sbjct: 185 EVMV-TGKGNKMRTVPIGQAAMDALKAWLAVRDTLVKLDPHPLFLSERGTRVSARVVQLR 243 Query: 273 FKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 KA G+ H +R A+ + + G ++ + YT D R Sbjct: 244 LKAHGQAIGLPTDVHPHVLRHSFASHVLQSSGDLRAVQEMLGHASIAATQIYT-SLDFQR 302 Query: 331 LGI 333 L Sbjct: 303 LAQ 305 >gi|187929889|ref|YP_001900376.1| site-specific tyrosine recombinase XerD [Ralstonia pickettii 12J] gi|187726779|gb|ACD27944.1| tyrosine recombinase XerD [Ralstonia pickettii 12J] Length = 314 Score = 123 bits (309), Expect = 3e-26, Method: Composition-based stats. Identities = 50/306 (16%), Positives = 97/306 (31%), Gaps = 29/306 (9%) Query: 51 LTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD 110 + E + P + ++ LA N+ ++ + + Sbjct: 2 RKAARKDAEAPSLPPQSADAIQRFCDALWLED---GLARNTLDAYRRDLTLYAHWLAERN 58 Query: 111 --YRKITTKHIRSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166 + + +R + SSA + T + F+WA+R+ V +P + K+ Sbjct: 59 KSIAETEDGDLADYFAARHAESRASSANRRRTVFKRFFQWALREHVVNTDPSRLLPTAKQ 118 Query: 167 KTEGIRPWTKEDMQQFKSF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222 + ++ ++ + G + R E + SGLR S+ + N Sbjct: 119 PPRFPKTLSETQVEALINAPDVDTPLGLRDRAMIELMYASGLRVSEIVALKTVEVGLNEG 178 Query: 223 SIKTQKTGTIITVELP------DGFMKLLAMTPIGK---------ETFFINNDKQKMNAT 267 ++ +P D + L G+ + F+ + M Sbjct: 179 VVRVVGGKGGKDRLVPFGAEAGDWLRRYLQDRQTGRTALLGERTADALFVTARGEGMTRQ 238 Query: 268 QFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 F K A A ++ S H +R AT + GA + G + + YT Sbjct: 239 AFWYLIKRYALLADIHAPLSPHTLRHAFATHLLNHGADLRVVQMLLGHADISTTQIYTHV 298 Query: 326 ADRIRL 331 A R RL Sbjct: 299 A-RERL 303 >gi|226949603|ref|YP_002804694.1| site-specific recombinase, phage integrase family [Clostridium botulinum A2 str. Kyoto] gi|226843121|gb|ACO85787.1| site-specific recombinase, phage integrase family [Clostridium botulinum A2 str. Kyoto] Length = 331 Score = 123 bits (309), Expect = 3e-26, Method: Composition-based stats. Identities = 47/258 (18%), Positives = 91/258 (35%), Gaps = 13/258 (5%) Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR-KH-TPSSAIQ 135 Y S L++ + ++ I I T +R + +R K SS Sbjct: 62 YLASKKLDGLSIETLKNYRYNLI-IFADYLRKPLAAIETMDLRMFLGARCKDMKQSSVNG 120 Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA 195 ++ ++ F W +EY+ NP +++ K+ +P T+E+ + + E + + Sbjct: 121 QISILKSFFGWLADEEYIPKNPAKKLKQTKQPKRVRKPLTEEEAELLRQAC-ETDRQKAL 179 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELP----DGFMKLLAMTPI 250 EFL+ +G R + + + + S K V K L Sbjct: 180 TEFLISTGCRLDEVFKVNKDDINWHEMSLFIVGKGDKERKVYFNTKAKILLKKYLFSRED 239 Query: 251 GKETFFINNDK--QKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHE 306 F+ + + ++ FK A AG+ KS H R AT ++G Sbjct: 240 DNPALFVTSKRPYHRLGKRSIQREFKKIANIAGIEKSIHPHLFRHSFATYKINSGMPMPI 299 Query: 307 LMATYGWKTVDQAETYTK 324 + G ++ + Y + Sbjct: 300 IQHLMGHESPATTQIYAQ 317 >gi|217967906|ref|YP_002353412.1| integrase family protein [Dictyoglomus turgidum DSM 6724] gi|217337005|gb|ACK42798.1| integrase family protein [Dictyoglomus turgidum DSM 6724] Length = 300 Score = 123 bits (309), Expect = 3e-26, Method: Composition-based stats. Identities = 46/275 (16%), Positives = 102/275 (37%), Gaps = 19/275 (6%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133 I Y + + + N+ S+ + + D ++IRS ++ Sbjct: 9 IENYINYLRFERNYSPNTLRSYLRDLLDFYKYCKEKDLDFTNKRNIRSYIQFIAQKGYKN 68 Query: 134 IQFLT---SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS--- 187 F+ S+R F++ + E + + + + PK + + + + +++++ + S Sbjct: 69 STFVRKVISLRSFFEYLLTFEKIKEDLTVFIPTPKIEKKLPQFLSIDEVRKLLNSPSLDN 128 Query: 188 -EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLL 245 G + R E L +G+R S+ + + N I+ K V + + +K+L Sbjct: 129 LIGIRDRAIIETLYATGIRVSELVGINEEDINWNYGEIRVFGKRAKERVVIVGEETLKIL 188 Query: 246 ---------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATI 296 + ++ FF+N +++ + K + S H +R AT Sbjct: 189 QLYKDYVRPKLLKKPEKAFFLNAKGGRISDRGVRMIIKKYTKEFNKKISPHTLRHTFATH 248 Query: 297 SADAGATAHELMATYGWKTVDQAETYTK-GADRIR 330 + GA + G + + YT D+IR Sbjct: 249 LLEGGADLRYVQELLGHVRISTTQIYTHLTTDQIR 283 >gi|308188856|ref|YP_003932987.1| Tyrosine recombinase xerC [Pantoea vagans C9-1] gi|308059366|gb|ADO11538.1| Tyrosine recombinase xerC [Pantoea vagans C9-1] Length = 301 Score = 123 bits (309), Expect = 3e-26, Method: Composition-based stats. Identities = 39/259 (15%), Positives = 85/259 (32%), Gaps = 19/259 (7%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDY---RKITTKHIRSGVESRKHTPSSAIQF---LT 138 L+ ++ S+ ++ + + ++ +RS + SA L+ Sbjct: 20 RQLSPLTQSSYARQLAALVAIADEMKLGSWAQLEPAQVRSMAARSRRAGLSASSLALRLS 79 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQPRLA 195 ++R W V Q ++ NP V P++ + +++ Q + R Sbjct: 80 ALRSFLDWQVSQGLLSANPAKGVMTPRKARHLPKNIDVDEVNQLLEIDLNDPLAVRDRAM 139 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMKLLAMTPIGKET 254 E + GLR S+ +H+ + K V + + + +ET Sbjct: 140 LEVMYGGGLRLSELVNMDCRHVDLDSGEVWVVGKGSKERRVPIGRTAVTWIQHWLPLRET 199 Query: 255 F-------FINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAH 305 F F++ +++ F + GV + H +R AT ++ Sbjct: 200 FGGQDDALFLSTRGNRISPRNVQKRFAEWGVRQGVASHIHPHKLRHSFATHLLESSGDLR 259 Query: 306 ELMATYGWKTVDQAETYTK 324 + G + + YT Sbjct: 260 AVQELLGHANLSTTQIYTH 278 >gi|196250937|ref|ZP_03149621.1| integrase family protein [Geobacillus sp. G11MC16] gi|196209578|gb|EDY04353.1| integrase family protein [Geobacillus sp. G11MC16] Length = 301 Score = 123 bits (309), Expect = 3e-26, Method: Composition-based stats. Identities = 43/295 (14%), Positives = 109/295 (36%), Gaps = 30/295 (10%) Query: 71 LKWLISEYRKSAH-WGSLAVNSRISFE---SYFDQIIRKSG-DFDYRKITTKHIRSGVES 125 + I E+ + ++N+ + F+ + + G IT H+R ++ Sbjct: 3 FRQAIDEFVLYLQIEKNYSLNTVDGYAYDLRCFENFLIQHGYSVQLNDITKTHVRRFIQH 62 Query: 126 R----KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 + P + + ++ ++ K+ V++ + + + ++ PK ++ + ++++ Sbjct: 63 QITKENVKPRTIYRRISCLKSFSKYCVKENLIDSDFMIGIDTPKTDSKLPTYMSLSELRK 122 Query: 182 FKSFWSE-----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITV 235 F + + L F+ L +G+R S+ + + + +I+ K + Sbjct: 123 LFHFLEQDNSRMAMRNHLLFKLLATTGMRRSEIVELTWEQIDLSNNTIRIYGKGKKERLL 182 Query: 236 ELPDGFMKLLAM--------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---K 284 L + L+ + F+N + +K+N FK KAG+ Sbjct: 183 PLHPMVVPLIKSYMGSLEEYQLHPSQPVFLNKNGKKLNPRGLHKIFKEILQKAGLPPQRF 242 Query: 285 SAHGVRKFSATISADAGA---TAHELMATYGWKTVDQAETYTK-GADRIRLGIKN 335 S H +R AT+ + G +++ + YT ++ + I+ Sbjct: 243 SLHHLRHTFATLLIQENKENVDLRTVQELLGHESLVTTQVYTHVDFEQKKKAIET 297 >gi|284048585|ref|YP_003398924.1| tyrosine recombinase XerC [Acidaminococcus fermentans DSM 20731] gi|283952806|gb|ADB47609.1| tyrosine recombinase XerC [Acidaminococcus fermentans DSM 20731] Length = 311 Score = 123 bits (309), Expect = 3e-26, Method: Composition-based stats. Identities = 45/259 (17%), Positives = 92/259 (35%), Gaps = 23/259 (8%) Query: 89 VNSRISFESYFDQIIRKSGDFDYRKITTKHIR---SGVESRKHTPSSAIQFLTSMRVLFK 145 N + + + +++ DF + ++T IR + + R + + + ++S+R ++ Sbjct: 36 ENYLADIRHFKEFMAQRTEDFRWPQVTVLDIRSYLAQMHDRDLSRRTIARRISSLRSFYR 95 Query: 146 WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRLAFEFLLY 201 + R+ V NP V PK + + + ++ G + R EFL Sbjct: 96 YLRREGRVKTNPFTRVRTPKLEKKLPVFLEEFEINLLLRMPDCTTVLGRRDRAILEFLYS 155 Query: 202 SGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLLAM------------- 247 +G R S+ + + N ++I K V L + + Sbjct: 156 TGCRVSELVGLTLTRVDLGNRYAILLGKGRKERLVPLGHPCVAAMEDYLRHSRGTLMEKY 215 Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAH 305 +T F+N+ + ++A + K S H +R AT D GA Sbjct: 216 QAPRHQTVFVNSRGRPLSARSVRRILDKYVEMTALQKHVSPHTIRHTFATHLLDHGADLR 275 Query: 306 ELMATYGWKTVDQAETYTK 324 + G ++ + YT Sbjct: 276 AVQELLGHVSLSTTQIYTH 294 >gi|259503196|ref|ZP_05746098.1| tyrosine recombinase XerD [Lactobacillus antri DSM 16041] gi|259168853|gb|EEW53348.1| tyrosine recombinase XerD [Lactobacillus antri DSM 16041] Length = 295 Score = 123 bits (309), Expect = 3e-26, Method: Composition-based stats. Identities = 46/271 (16%), Positives = 103/271 (38%), Gaps = 25/271 (9%) Query: 77 EYRKSAHWGSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIRSGVESRK---HTP 130 Y KS H + N+ +S+ D R+ G D+ + + + V +K +P Sbjct: 10 AYLKSNH--GRSANTLLSYRRDLDQAVAFFRQRGVSDWTAVDQYQLLALVAEQKKRGRSP 67 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE-GIRPWTKEDMQQFKSF---- 185 ++ + L+++R +++ VR + + NP ++ ++ + T +++Q + Sbjct: 68 ATINRQLSALRQFYRYLVRHQQLRFNPTELIDNQEQTDDTPPVILTAAEIKQLLAAPNPD 127 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-KTGTIITVELPD----G 240 G + R L +G+R S+ + L +I ++ + V + D Sbjct: 128 HPLGKRDRAMLAVLATTGMRVSELVALLLTDLHLDIKMLRLGSGSRRERLVPVSDQAVQE 187 Query: 241 FMKLLAM-----TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFS 293 LA +G++ F+N ++ + +AG+ K + +R Sbjct: 188 LEHYLAAVRPQLAAMGEQAVFVNAHGHQLTRQGIWKKLRELVRRAGIEKTVTPRTLRYSF 247 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTK 324 A +GA + G+ + + Y K Sbjct: 248 AVQLLQSGADGRLIQEMLGYSELRAIKPYLK 278 >gi|77463707|ref|YP_353211.1| putative integrase for prophage CP-933U [Rhodobacter sphaeroides 2.4.1] gi|77388125|gb|ABA79310.1| putative integrase for prophage CP-933U [Rhodobacter sphaeroides 2.4.1] Length = 277 Score = 123 bits (309), Expect = 4e-26, Method: Composition-based stats. Identities = 45/254 (17%), Positives = 85/254 (33%), Gaps = 20/254 (7%) Query: 89 VNSRISFESYFDQIIRKSGDFDYRKITTKHIR----SGVESRKHTPSSAIQFLTSMRVLF 144 +R + + ++ + D R + H+P T VL Sbjct: 5 ERTRTDYRRWGLRLAEEFKDDPAEIFEDPGSRGEVNEWRKQWAHSPRQYDYAGTVAAVLL 64 Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGL 204 WAV Q + + C + + WT + + ++ E R +GL Sbjct: 65 NWAVDQGKIRQHHCQRLRKVYEVDRAEIVWTPDHREAIEAKAPE--WIRRILTAACETGL 122 Query: 205 RCSDSCRAGVQHLQ----NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINND 260 R +D + H++ ++T K + + + + KLL TP + ++ Sbjct: 123 RVADLTKLAWSHVEATPHGRRIRVRTSKRKRVAYIPVTEAMGKLLDATPRDRMLILLSER 182 Query: 261 KQKMNATQFSIWFKAKATKAGV-------NKSAHGVRKFSATISADAGATAHELMATYGW 313 + + + S + KAG+ + R +AT AG + E+ A GW Sbjct: 183 GKPLTPHRASEGLRQWRDKAGLTPESLGYDLRLQDARGTAATRLLSAGLSLAEIAAHMGW 242 Query: 314 KTVDQA---ETYTK 324 A E Y + Sbjct: 243 SIRHAAAVIEHYAR 256 >gi|229019026|ref|ZP_04175867.1| Tyrosine recombinase xerC [Bacillus cereus AH1273] gi|229025272|ref|ZP_04181692.1| Tyrosine recombinase xerC [Bacillus cereus AH1272] gi|228736025|gb|EEL86600.1| Tyrosine recombinase xerC [Bacillus cereus AH1272] gi|228742266|gb|EEL92425.1| Tyrosine recombinase xerC [Bacillus cereus AH1273] Length = 302 Score = 123 bits (309), Expect = 4e-26, Method: Composition-based stats. Identities = 43/272 (15%), Positives = 96/272 (35%), Gaps = 26/272 (9%) Query: 85 GSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIRSGV---ESRKHTPSSAIQFLT 138 + + + S+++ + + + G + +T +R + K S + ++ Sbjct: 21 RNYSKYTIASYQNDLEHFVQFMEREGISSFLDVTYADVRLYLTTLHDEKLARKSVARKVS 80 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRL 194 S+R L+++ +R+ Y NP PK++ + E++++ G + + Sbjct: 81 SLRSLYRFLMREGYQKDNPFALASLPKKELSIPKFLYAEELEELFEVSDTETPLGQRNQA 140 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE------------LPDGF 241 E + +G+R S+ + + + +I K + + +G Sbjct: 141 LLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQRYIPFGSYAQDALITYIENGR 200 Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299 +L+ T F+N + KA + S H +R AT D Sbjct: 201 KQLIQKTEEHSHMVFLNAKGTPLTDRGVRYVLNELIKKASLTMRISPHMLRHTFATHMLD 260 Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRL 331 GA + G + + + YT + RL Sbjct: 261 EGADLRTVQELLGHENLSTTQIYTH-VSKERL 291 >gi|168786649|ref|ZP_02811656.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC869] gi|189373217|gb|EDU91633.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC869] Length = 298 Score = 123 bits (309), Expect = 4e-26, Method: Composition-based stats. Identities = 41/270 (15%), Positives = 91/270 (33%), Gaps = 20/270 (7%) Query: 75 ISEYRKSAH-WGSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIRSGVESRKHTP 130 + Y + L+ + ++++ + II ++G ++++ +R+ + Sbjct: 8 VERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQNWQQCDAAMVRNFAVRSRRKG 67 Query: 131 SSAIQF---LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186 A L+++R F W V Q + NP V PK + +D+ + Sbjct: 68 LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKTPRHLPKNIDVDDINRLLDIDI 127 Query: 187 --SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMK 243 + R E + +GLR S+ ++HL K + + + Sbjct: 128 NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVIGKGSKERRLPIGRNALS 187 Query: 244 LLAMT-------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSA 294 + + F++ ++++A F K G+N H +R A Sbjct: 188 WIEHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRHSFA 247 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTK 324 T ++ + G + + YT Sbjct: 248 THMLESSGDLRGVQELLGHANLSTTQIYTH 277 >gi|323165681|gb|EFZ51467.1| integrase [Shigella sonnei 53G] Length = 356 Score = 123 bits (309), Expect = 4e-26, Method: Composition-based stats. Identities = 61/343 (17%), Positives = 114/343 (33%), Gaps = 25/343 (7%) Query: 7 LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHE---STFIPAYMSALTGSTPKREYINS 63 LPP + R+ Y G+ L + I A + +G K Sbjct: 12 LPPNLY---IRNNGYYCYRDPRTGKEFGLGRDRRIAITEAIQANIELFSGHKHKPLTARI 68 Query: 64 PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123 TL + Y K + + I++ S I R D ITTK I + + Sbjct: 69 NSDNSVTLHSWLDRYEKILASRGIKQKTLINYMSKIKAIRRGLPDAPLEDITTKEIAAML 128 Query: 124 ESRKH--TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 +SA +++ F+ A+ + ++ P + K + R E ++ Sbjct: 129 NGYIDEGKAASAKLIRSTLSDAFREAIAEGHITTKPVAATRAAKSEVRRSRLTADEYLKI 188 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE----- 236 +++ S RLA E + +G R D C + + ++ KTG I + Sbjct: 189 YQTAESSPCWLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAIPTTLHV 248 Query: 237 ----LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-----NKSAH 287 + +G ET + ++ +++ S +F +G+ + H Sbjct: 249 DALGISMKETLDKCKEILGGETIIASTRREPLSSGTVSRYFMRARKASGLSFEGDPPTFH 308 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 +R + + + G K+ A Y DR R Sbjct: 309 ELR-SLSARLYEKQISDKFAQHLLGHKSDTMASQY--RDDRGR 348 >gi|251787836|ref|YP_003002557.1| site-specific tyrosine recombinase XerC [Dickeya zeae Ech1591] gi|247536457|gb|ACT05078.1| tyrosine recombinase XerC [Dickeya zeae Ech1591] Length = 302 Score = 123 bits (309), Expect = 4e-26, Method: Composition-based stats. Identities = 44/259 (16%), Positives = 89/259 (34%), Gaps = 19/259 (7%) Query: 85 GSLAVNSRISFESYFDQIIR---KSGDFDYRKITTKHIRSGVESRKH---TPSSAIQFLT 138 L+ ++ S+ II SG +++ + +R+ V K +S Q L+ Sbjct: 22 RQLSPLTQRSYAHQLQVIIEMLSSSGIAEWQALDAAGVRAVVARSKRDGLNAASLAQRLS 81 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQPRLA 195 ++R L W V + + NP V PK + ++M + + R Sbjct: 82 ALRSLLDWLVGRGELKANPARGVPAPKAGRHLPKNMDVDEMNRLLEIDLNDPLAVRDRAM 141 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI--------ITVELPDGFMKLLAM 247 E + +GLR ++ H+ + G+ V ++ + + Sbjct: 142 LEVMYGAGLRLAELVGLDCGHINLESGEVWVMGKGSKERRLPVGATAVTWLTHWLAIREI 201 Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAH 305 + FI++ ++++ F K GVN H +R AT ++ Sbjct: 202 YAPEDDAVFISSLGKRISMRNVQKRFAEWGVKQGVNSHVNPHKLRHSFATHMLESSGDLR 261 Query: 306 ELMATYGWKTVDQAETYTK 324 + G + + YT Sbjct: 262 AVQELLGHANLSTTQIYTH 280 >gi|225023845|ref|ZP_03713037.1| hypothetical protein EIKCOROL_00711 [Eikenella corrodens ATCC 23834] gi|224943319|gb|EEG24528.1| hypothetical protein EIKCOROL_00711 [Eikenella corrodens ATCC 23834] Length = 307 Score = 123 bits (309), Expect = 4e-26, Method: Composition-based stats. Identities = 44/268 (16%), Positives = 87/268 (32%), Gaps = 13/268 (4%) Query: 70 TLKWL--ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK 127 ++ W I + S + + ++ ++ + + + + Sbjct: 2 SIGWTAQIEAWLHSLQQQNHSPHTLAAYRRDLTWLADFQPQSKLARPLFTAALRQLGQQN 61 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 P S + L++ R +W V+ Y+ +P ++ PK + E + Q Sbjct: 62 QHPRSIARRLSAWRQFCRWLVQTGYLKADPTHGLKAPKAPERLPKAVPAEPLNQLLDQAP 121 Query: 188 EG---SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFMK 243 E S+ FE L SGLR +++C + L I G + L ++ Sbjct: 122 ENPLDSRDLAIFELLYGSGLRLAEACALDLDDLNLQSGWIAVTGKGRKQRHLPLTAQSIR 181 Query: 244 LL------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG-VNKSAHGVRKFSATI 296 L + F +++ A Q + AT G + S H +R A+ Sbjct: 182 ALAGYLKTRTAAPDETALFTGRTGRRLGARQIQKRLQQFATHHGSRHLSPHMLRHSYASH 241 Query: 297 SADAGATAHELMATYGWKTVDQAETYTK 324 + G + + YTK Sbjct: 242 LLQNARDIRAVQELLGHSQLATTQHYTK 269 >gi|110680280|ref|YP_683287.1| tyrosine recombinase XerD [Roseobacter denitrificans OCh 114] gi|109456396|gb|ABG32601.1| tyrosine recombinase XerD [Roseobacter denitrificans OCh 114] Length = 323 Score = 123 bits (309), Expect = 4e-26, Method: Composition-based stats. Identities = 44/286 (15%), Positives = 98/286 (34%), Gaps = 33/286 (11%) Query: 72 KWLISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGV---ES 125 IS + ++ A A N+ +++ D+ T + + + ++ Sbjct: 5 GTWISAFLEAQAAELGAARNTLLAYGRDLKDFEGYLHHRTLDFATATQGDVEAYLIACDA 64 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + + ++ + L++++ L+++A + + + NP L + P R + + ++ ++ + Sbjct: 65 QGLSKATRARRLSAVKQLYRFAFEEGWRSDNPALQITGPGRDRKLPKTLSEAEVDRLLEA 124 Query: 186 W-------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVEL 237 ++ ++ E L +G+R S+ V + + + K G V L Sbjct: 125 ARTSGRNAADRARNTCLMELLYATGMRVSELVSLPVSAARGDPRMLLIRGKGGKERMVPL 184 Query: 238 PDGFMKLLAMT----------------PIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281 + P + F + +F + K A AG Sbjct: 185 SPPARDATSEWLQLRDEKEAQKKTEGHPPSRFLFASRGVSGHLTRHRFYLLIKELAVNAG 244 Query: 282 V---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 V + H +R AT GA + G V E YT Sbjct: 245 VSPSKVTPHTLRHAFATHLLANGADLRSIQTLLGHADVATTEIYTH 290 >gi|239947482|ref|ZP_04699235.1| tyrosine recombinase XerD [Rickettsia endosymbiont of Ixodes scapularis] gi|239921758|gb|EER21782.1| tyrosine recombinase XerD [Rickettsia endosymbiont of Ixodes scapularis] Length = 306 Score = 123 bits (309), Expect = 4e-26, Method: Composition-based stats. Identities = 50/287 (17%), Positives = 106/287 (36%), Gaps = 39/287 (13%) Query: 75 ISEYRKSA-HWGSLAVNSRISFESYF----DQIIR-KSGDFDYRKITTKHIRSGVESRKH 128 IS++ + +L+ NS +S++ + + + K + + + + + Sbjct: 4 ISQFLEMLLAERALSKNSILSYKRDLFDFQNYLAKQKLSELNITTENVRDWIEYLATNDL 63 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-- 186 S + +++++ +++ + + ++A NP L+V+ PK + + + + ++ Sbjct: 64 QARSINRKISTIKSYYEFLISENHIAFNPVLNVDLPKYQNKLPEILSIDQIKSLLEHCSQ 123 Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN---------IFSIKTQKTGTIIT 234 EG + L SGLR S+ + + N IFS+ + + Sbjct: 124 DNSPEGIRLNAMIHLLYASGLRVSELVSLKLADILTNKTSKGEVRKIFSVLGKGNKERVI 183 Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQK--------------MNATQFSIWFKAKATKA 280 V + + I F+N K K M F+I K+ A A Sbjct: 184 VINEQAVISIAKYLAIRD--VFVNKAKPKNLIYLFPSSALAGYMTRQNFAILLKSAALYA 241 Query: 281 GVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 G+N S H +R A+ + GA + G + + YT Sbjct: 242 GLNPEHISPHILRHSFASHLLEGGADLRVIQELLGHADISTTQIYTH 288 >gi|126726516|ref|ZP_01742357.1| tyrosine recombinase XerD [Rhodobacterales bacterium HTCC2150] gi|126704379|gb|EBA03471.1| tyrosine recombinase XerD [Rhodobacterales bacterium HTCC2150] Length = 312 Score = 123 bits (309), Expect = 4e-26, Method: Composition-based stats. Identities = 40/276 (14%), Positives = 97/276 (35%), Gaps = 32/276 (11%) Query: 86 SLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGV---ESRKHTPSSAIQFLTSM 140 + N+ +++ D++ + + I + +++ S+ + L+++ Sbjct: 24 DASENTLLAYARDLKDFQDWIARQKLDFQTTSREDIEKYLINCDAQGLAKSTRARRLSAV 83 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS-------FWSEGSQPR 193 + LF++A NP L ++ P R + +++++ + + S+ ++ Sbjct: 84 KQLFRFAYEDGRRDDNPALQIKGPGRDKRLPKTLSEDEVDRLLASASSLGRKDSDRARNT 143 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFMKLLAMTPIGK 252 + L +G+R ++ V + + + K G V L + A + Sbjct: 144 CMMQLLYATGMRVTELVSLPVSAARGDPRMILVMGKGGKERLVPLSPPAREATATWLNIR 203 Query: 253 ET--------------FFINNDKQ--KMNATQFSIWFKAKATKAGVN---KSAHGVRKFS 293 + F + + + +F + K + +AGV+ + H +R Sbjct: 204 DATQKLAEKKGAAPSRFLFPSSGKLGHITRHRFYLLIKEISVQAGVDPSKVTPHTMRHAF 263 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 AT GA + G + E YT D Sbjct: 264 ATHLLARGADLRSIQTLLGHADISTTEIYTHVLDER 299 >gi|237668049|ref|ZP_04528033.1| tyrosine recombinase XerC [Clostridium butyricum E4 str. BoNT E BL5262] gi|237656397|gb|EEP53953.1| tyrosine recombinase XerC [Clostridium butyricum E4 str. BoNT E BL5262] Length = 332 Score = 123 bits (309), Expect = 4e-26, Method: Composition-based stats. Identities = 43/261 (16%), Positives = 89/261 (34%), Gaps = 13/261 (4%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR--SGVESRKHTPSS 132 I Y + + + + ++ I+ IR + PS+ Sbjct: 58 ILLYLQVKKLENYSKATLNNYMYTLRNFS-NFIVKPVSNISKNDIRYFMAINYENLKPST 116 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192 L ++ F+W ++E + NP ++ + T E++++ + + + Sbjct: 117 VNNKLACIKAFFEWLEQEEIIPKNPARYLQGTRLPKHLRHSLTIEELEKIRLSCKD-VRE 175 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG----FMKLLAM 247 R EFL +G R S+ +A + L + ++ K TV D + Sbjct: 176 RALIEFLFATGCRISEVVKANISDLDLSNNLLRVIGKGDKERTVFFNDKTKLHIKNYIDT 235 Query: 248 TPIGKETFFINN--DKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGAT 303 E FI + +++ + +A + KS H +R AT+ +GA Sbjct: 236 RKDENEALFIASKFPYKRIGKRGLELIISRIGERADIGKSVYPHLLRHTMATLGLQSGAD 295 Query: 304 AHELMATYGWKTVDQAETYTK 324 + G T + Y + Sbjct: 296 ITTIQHLLGHTTPSTTQIYAE 316 >gi|154491730|ref|ZP_02031356.1| hypothetical protein PARMER_01346 [Parabacteroides merdae ATCC 43184] gi|154087971|gb|EDN87016.1| hypothetical protein PARMER_01346 [Parabacteroides merdae ATCC 43184] Length = 302 Score = 123 bits (309), Expect = 4e-26, Method: Composition-based stats. Identities = 54/278 (19%), Positives = 103/278 (37%), Gaps = 29/278 (10%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIR-----KSGDFDYRKITTKHIRSGV---E 124 LI + + + + + ++ Q K G F ++ T +R+ + Sbjct: 4 LIDSFLDYLRYERNYSEYTINAYFKDLQQFEDFVKEKKEGIFVPEEVDTDIVRNWIISLL 63 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 K +P S + L+S++ FK+ ++Q +V++NP V PK K ++DM++ Sbjct: 64 DNKISPVSVNRKLSSLKSFFKFLMKQGFVSVNPLRFVTGPKTKKPLPTFVKEKDMEELLD 123 Query: 185 FWS-----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELP 238 EG + RL E L +G+R S+ + + I+ T K + Sbjct: 124 GDGFDEDFEGVRDRLVLEMLYDTGVRRSELVGLQDTDIDYDAMLIRVTGKRNKQRLIPFA 183 Query: 239 DGFMKLLAM--------TPIGKETFFINNDKQKMN----ATQFSIWFKAKATKAGVNKSA 286 + L+ G FF+ + ++++ T T A S Sbjct: 184 ERLKNLMLAYTEVRNREVDAGCGWFFVRKNGEQLSTGILYTIVKKRLSDIPTLA--KCSP 241 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R AT + GA + + G ++ YT Sbjct: 242 HVLRHSFATSMLNNGAELNAVKELLGHSSLASTSIYTH 279 >gi|89068929|ref|ZP_01156311.1| tyrosine recombinase XerD [Oceanicola granulosus HTCC2516] gi|89045510|gb|EAR51574.1| tyrosine recombinase XerD [Oceanicola granulosus HTCC2516] Length = 315 Score = 123 bits (309), Expect = 4e-26, Method: Composition-based stats. Identities = 48/292 (16%), Positives = 100/292 (34%), Gaps = 34/292 (11%) Query: 74 LISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFD--YRKITTKHIRSGV---ESRK 127 I + ++ A A N+++++ + H+ + + E+ Sbjct: 11 WIQAFLEAQAAELDAATNTQLAYARDLKDFAAWLERRPAHFADAAQSHVEAYLIDCEAIG 70 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 ++ + L++++ L+++A + + A NP + + P R+ + + E++ + + + Sbjct: 71 LARATRARRLSAIKQLYRFAFEEGWRADNPAIRIAGPGREKRLPKTLSVEEVDRLLA--A 128 Query: 188 EGSQPRLAF------EFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDG 240 + PR A E L +G+R S+ V + + + K G V L G Sbjct: 129 ARTTPRDAVRNTCLVELLYATGMRVSELVSLPVAATRGDPRMLLVRGKGGKERMVPLSQG 188 Query: 241 FMKLLA--------------MTPIGKETFFINNDKQ--KMNATQFSIWFKAKATKAGV-- 282 +A F + + + +F K A GV Sbjct: 189 ARAAVAEWLVARDAAEAAAQARGKAASRFLFPSHGKDGHLTRHRFFTLIKEIAVLGGVSP 248 Query: 283 -NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 + H +R AT + GA + G V E YT D + Sbjct: 249 EKVTPHTLRHAFATHLLEGGADLRSIQTLLGHADVGTTEIYTHVLDARLRAL 300 >gi|323974393|gb|EGB69521.1| tyrosine recombinase XerC [Escherichia coli TW10509] Length = 298 Score = 123 bits (309), Expect = 4e-26, Method: Composition-based stats. Identities = 41/270 (15%), Positives = 91/270 (33%), Gaps = 20/270 (7%) Query: 75 ISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITT------KHIRSGVESRK 127 + Y + L+ + ++++ + II + + + ++ + Sbjct: 8 VERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRKG 67 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186 +S L+++R F W V Q + NP V PK + +D+ + Sbjct: 68 LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDINRLLDIDI 127 Query: 187 --SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT--------VE 236 + R E + +GLR S+ ++HL + G+ V Sbjct: 128 NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAVA 187 Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSA 294 + ++ L + + F++ ++++A F K G+N H +R A Sbjct: 188 WIEHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRHSFA 247 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTK 324 T ++ + G + + YT Sbjct: 248 THMLESSGDLRGVQELLGHANLSTTQIYTH 277 >gi|307718592|ref|YP_003874124.1| tyrosine recombinase XerC [Spirochaeta thermophila DSM 6192] gi|306532317|gb|ADN01851.1| tyrosine recombinase XerC [Spirochaeta thermophila DSM 6192] Length = 312 Score = 123 bits (309), Expect = 4e-26, Method: Composition-based stats. Identities = 46/290 (15%), Positives = 94/290 (32%), Gaps = 30/290 (10%) Query: 74 LISEYRKS-AHWGSLAVNSRISFESYF---DQIIRKSGDFDYRKITT--KHIRSGVESRK 127 LI + +H L+ + S+ + + K G +H + + Sbjct: 16 LIDRFLAHLSHMRGLSEATVRSYRNDLVKVGAFLEKLGTDLVSATREDIRHCVAEYTLAR 75 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 PSS + L+S+R +++ ++ + +P + K ++++ + Sbjct: 76 QAPSSINRMLSSLRSWYRFLRKEGVRSDSPMEGISSVKAGKRLPSFLFEDEVDRLLDIEG 135 Query: 188 ---EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMK 243 + R E L +G R + +Q + + K G + L G K Sbjct: 136 SDFASLRDRALLEVLYSTGCRVQELVSLTTSGVQVSRGWCVVKGKGGKERLLFLGLGARK 195 Query: 244 LLAM------------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289 LA + F+N + + + +A + G+ K S H Sbjct: 196 ALAAYLPLRQALLERMGRREEGALFVNQKGSPLTPRGVAYIIERRAREKGLEKRISPHVF 255 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339 R AT GA + G ++ + YT L + +R+ Sbjct: 256 RHSFATHVLSRGADLRVVQEMLGHASLSTTQVYTH------LSLPALKRM 299 >gi|312884205|ref|ZP_07743916.1| site-specific tyrosine recombinase XerC [Vibrio caribbenthicus ATCC BAA-2122] gi|309368133|gb|EFP95674.1| site-specific tyrosine recombinase XerC [Vibrio caribbenthicus ATCC BAA-2122] Length = 310 Score = 123 bits (309), Expect = 4e-26, Method: Composition-based stats. Identities = 36/273 (13%), Positives = 93/273 (34%), Gaps = 24/273 (8%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQI--------IRKSGDFDYRKITTKHIRSGVES 125 L++ Y L+++++ +++ + + I D + + + Sbjct: 16 LVNFYEYLRAEKGLSLHTQRNYKQQLETMAFQLVQLGIEDWSSVDAAWVRQLASKGMRDG 75 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 K SS L+S+R F + + + +A NP V P++K + +++ Q Sbjct: 76 MKA--SSLATRLSSLRAFFDFLILRGEIAANPAKGVSAPRKKRPLPKNLDVDEVNQLLEV 133 Query: 186 W---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT---------II 233 + R E + +GLR ++ ++ ++ + ++ G Sbjct: 134 DEDDPLAVRDRAIMELMYGAGLRLAELVNVDLKDIRTSRGELRVVGKGEKERKVPFAGQA 193 Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRK 291 + + ++ + F++ +++ K V + S H +R Sbjct: 194 VIWVEKWLRVRGQLSDPNESALFVSKLGGRISHRSVQKRMAEWGQKQAVSSHISPHKLRH 253 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTK 324 AT ++ + G + + + YT Sbjct: 254 SFATHMLESSQNLRAVQELLGHENISTTQIYTH 286 >gi|239948273|ref|ZP_04700026.1| integrase [Rickettsia endosymbiont of Ixodes scapularis] gi|239922549|gb|EER22573.1| integrase [Rickettsia endosymbiont of Ixodes scapularis] Length = 395 Score = 123 bits (309), Expect = 4e-26, Method: Composition-based stats. Identities = 59/298 (19%), Positives = 107/298 (35%), Gaps = 21/298 (7%) Query: 59 EYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESY--FDQIIRKSGDFDYRKITT 116 E + P + T K L +Y + N + + ++ + I Sbjct: 99 ELNDLPISEELTFKELFDKYINNYA----KHNIKRWRDCIATMNRQAKHFYPMKISAIQK 154 Query: 117 KHIRSGVESR-KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175 I+ + K SA +FL + +F A+ E + NP +++ K ++ R T Sbjct: 155 ADIQQTFHNLTKFGKYSANKFLEMLSAIFNKAIEWELLGKNPVTGLKKHKEQSR-DRYIT 213 Query: 176 KEDMQQFKSFWSEGSQPRLA--FEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGT 231 KE+ QF E + LY+G R S+ +++ N + I K G Sbjct: 214 KEEAPQFFQALKEEQNQLMKDFILISLYTGARKSNVLSMRWENVSFGNKTWYIADTKNGD 273 Query: 232 IITVELPDGFMKLLAMTPIGKET--FFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHG 288 TV L + +K+L E+ F + + + +K T+AG+ + H Sbjct: 274 PQTVVLIEEAIKILEARKKESESEWVFPSEASSSGHLQEPKKAWKRICTRAGLKDLRLHD 333 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSD 346 +R+ + A GA+ + + K+ Y RL + R SD Sbjct: 334 LRRTCGSWMAINGASQYVIGKALNHKSPTSTAIY------ARLSLDPVREFMEKSTSD 385 >gi|297543544|ref|YP_003675846.1| integrase family protein [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296841319|gb|ADH59835.1| integrase family protein [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 373 Score = 123 bits (309), Expect = 4e-26, Method: Composition-based stats. Identities = 57/331 (17%), Positives = 116/331 (35%), Gaps = 40/331 (12%) Query: 49 SALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSG 107 AL K E TL+ I+E+ K A + IS +S + II G Sbjct: 42 KALAEIIAKIEKNEFIEPSKITLQQFINEWLKIYGEPKWAPKTLISNKSLINNYIIPNLG 101 Query: 108 DFDYRKITTKHIRSGVESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP 164 + +K+ I+ K ++ + + K+AV+ +Y+A NPC VE P Sbjct: 102 HIELQKLKPVEIQKFYNFLKEKQLSNTTVNYVHKLLNQVLKFAVKWQYIAKNPCELVEAP 161 Query: 165 KRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224 K+ + W E +++ K + + + + L++GLR + C + + +I Sbjct: 162 KKDKKEFVTWNFEHVKKAKKIFKD-TPIYIHVMIALHTGLRLGEICGLRWEDIDFKNQTI 220 Query: 225 KTQKTGTIIT----------------VELPDGFMKLLAMTPIGK---------------E 253 ++T I + +PD +++L + E Sbjct: 221 TVRRTAQRIDGRFIFKEPKTETSKGIIAIPDFLVQILKQEKNKQLQNKLIFGEKYITEYE 280 Query: 254 TFF-INNDKQKMNATQFSIWFKAKA-TKAGVNK-SAHGVRKFSATISADAGATAHELMAT 310 F + D + + FK ++ + H +R AT+ +G + Sbjct: 281 GFISVWEDGRFKEPDYVTKKFKKILQKQSEIPVIRFHDLRHTHATLMLRSGVDLKTISKR 340 Query: 311 YGWKTVDQAETYTKGADRIRLGIKNSRRISS 341 + + D + + + R++ + Sbjct: 341 LRHGRISTTADFYSHVD-LEMEREALRKLEA 370 >gi|210633132|ref|ZP_03297699.1| hypothetical protein COLSTE_01612 [Collinsella stercoris DSM 13279] gi|210159286|gb|EEA90257.1| hypothetical protein COLSTE_01612 [Collinsella stercoris DSM 13279] Length = 305 Score = 123 bits (309), Expect = 4e-26, Method: Composition-based stats. Identities = 45/288 (15%), Positives = 100/288 (34%), Gaps = 28/288 (9%) Query: 74 LISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITT--KHIRSGVESRKHTP 130 LI +Y + + + + ++ + + R + + + +R+ + + Sbjct: 11 LIDDYIAHLSRFEGASSETVRAYTQHLEAYARWAARAGRDGLAPSTRDVRAYLSELRAAG 70 Query: 131 SSAIQF---LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 +A L+S+R F+W + +P ++ PK + + + Sbjct: 71 YAARTVAAHLSSIRSFFRWLSDEGLAGADPVTAIASPKLDRPLPHVLAPDQLARLMDAPD 130 Query: 188 E----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFM 242 G + E + +G R S+ + + + S++ K V L D Sbjct: 131 LASAGGKRDAAMLELFIATGARISELAALDLADVDVSRASVRLFGKGSKERLVPLYDRAC 190 Query: 243 KLLA--------------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SA 286 + A + +FFI++ + M+A+ F A +AG+ + Sbjct: 191 SVCARYLEEGRGELLGRGAASSREASFFISDRGRPMSASSLRHRFDALKRRAGIPADITP 250 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGI 333 H +R AT GA + G ++ + YT DR++ + Sbjct: 251 HAMRHTFATELLIGGADLRSVQELLGHASLSTTQIYTHLTPDRLKSAV 298 >gi|90408775|ref|ZP_01216920.1| integrase/recombinase (XerC/CodV family) [Psychromonas sp. CNPT3] gi|90310119|gb|EAS38259.1| integrase/recombinase (XerC/CodV family) [Psychromonas sp. CNPT3] Length = 298 Score = 123 bits (309), Expect = 4e-26, Method: Composition-based stats. Identities = 38/271 (14%), Positives = 97/271 (35%), Gaps = 21/271 (7%) Query: 75 ISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGD---FDYRKITTKHIR---SGVESRK 127 I Y A L+ + ++ + I ++ + + H+R + + Sbjct: 7 IDRYLNHIASQRGLSPITIKNYSRNLAEFISLLEPQNIKSWQDLNSDHVRLIIKELHQKG 66 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186 S ++++R ++ V+ E + NP V PK + + +++ Q + Sbjct: 67 IKSRSIATKISALRSFLEFLVQDEVLTFNPAKGVVTPKLNKPLPKNISVDEVFQLLNIHE 126 Query: 187 --SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELP----D 239 + + E + SGLR S+ ++ L+ + K + + + Sbjct: 127 DDPLSLRDQCMMELMYSSGLRLSELVGIDLKDLKLREAEVMVLGKGSKQRLLPITKKAVE 186 Query: 240 GFMKLLAMTP----IGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFS 293 L + P G++ F++ K++++A + + + + + + H +R Sbjct: 187 SLRAWLKVRPELCESGEQALFVSKQKKRISARNVQMRMEKWGLQQQLPSHLNPHKLRHSF 246 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTK 324 AT ++ + + G + + YT Sbjct: 247 ATHMLESSGNLRAVQSLLGHANLSTTQVYTH 277 >gi|194364318|ref|YP_002026928.1| site-specific tyrosine recombinase XerD [Stenotrophomonas maltophilia R551-3] gi|194347122|gb|ACF50245.1| tyrosine recombinase XerD [Stenotrophomonas maltophilia R551-3] Length = 325 Score = 123 bits (309), Expect = 4e-26, Method: Composition-based stats. Identities = 46/268 (17%), Positives = 84/268 (31%), Gaps = 30/268 (11%) Query: 86 SLAVNSRISFESYFDQIIR-----KSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSM 140 LA + S+ + + R + G + + +P S + L+++ Sbjct: 40 GLARATLDSYRRDLEGLARWTDGREGGLAGIERPGLFDYLAWRTRHGWSPRSNARLLSAL 99 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRLAF 196 R F VR+ + +P ++ PK + + + + G + R Sbjct: 100 RAFFADGVRRGDRSEDPSALLDPPKLPRLLPKALAESQIDALLAAPDIDSPLGLRDRAML 159 Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLL---------- 245 E + +GLR S+ + ++ T K V L + L Sbjct: 160 ELMYAAGLRVSELVLLPATAVNLRQGVLRVTGKGSKERLVPLGEESQHWLERYLQQSRPQ 219 Query: 246 -------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSAT 295 G+ FI + F K A AG++ S H +R AT Sbjct: 220 LVGKGKVQALADGQTPLFIEPTLHALTRQAFWHLVKRHAQVAGIDPARISPHALRHSFAT 279 Query: 296 ISADAGATAHELMATYGWKTVDQAETYT 323 + GA L G ++ + YT Sbjct: 280 HLLNRGADLRALQMLLGHSSLSTTQIYT 307 >gi|257458301|ref|ZP_05623450.1| tyrosine recombinase XerD [Treponema vincentii ATCC 35580] gi|257444328|gb|EEV19422.1| tyrosine recombinase XerD [Treponema vincentii ATCC 35580] Length = 297 Score = 123 bits (309), Expect = 4e-26, Method: Composition-based stats. Identities = 44/276 (15%), Positives = 93/276 (33%), Gaps = 27/276 (9%) Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH----IRSGVESRKHTPSSA 133 Y SA + A + ++ + ++ G + + T + Sbjct: 12 YLISAE--ARAQLTAKTYINTMRLFQQQLGSERLIEDASADDCIGFLLARAEEGITGRTL 69 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----G 189 + ++R +++ + A NP +E P+R+ R +++ + + G Sbjct: 70 AKDQAALRSFYRFLQLENVRADNPAEQLESPRREKNLPRALELDEVDKLLAAIPLDTPNG 129 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-------------TIITVE 236 + R FE + +GLR S++ ++ + N +K + G +TV Sbjct: 130 IRDRALFELIYSAGLRVSEAVTLSLEDIFFNEQLLKVRGKGGKERIVPFGAQAEERLTVY 189 Query: 237 LPDGFMKLLAMTPIGK----ETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKF 292 L LL F+N+ +++ + +GV H +R Sbjct: 190 LKTARPLLLKPAHSENTETTGAVFLNHHGERLTRKGIWKRLQEIEQLSGVTTKIHTLRHS 249 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 AT GA + G ++ + YT D+ Sbjct: 250 YATHLLAGGADLRSVQCLLGHASIATTQIYTHIEDK 285 >gi|34499125|ref|NP_903340.1| integrase/recombinase [Chromobacterium violaceum ATCC 12472] gi|34104976|gb|AAQ61332.1| integrase/recombinase [Chromobacterium violaceum ATCC 12472] Length = 295 Score = 123 bits (309), Expect = 4e-26, Method: Composition-based stats. Identities = 47/272 (17%), Positives = 91/272 (33%), Gaps = 21/272 (7%) Query: 86 SLAVNSRISFESYFDQIIRKSGDFDYRKITT--KHIRSGVES--RKHTPSSAIQFLTSMR 141 L+ N+ ++ ++ + + T + + + P++ + +++R Sbjct: 20 GLSQNTLAAYRRDLSKLAARLAERGVSLETATLADLEQALLAGVASEKPATRARLTSALR 79 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAFE 197 ++ R +P + PK+ + ++ D++ G + R E Sbjct: 80 RYYQHLSRNGVRQDDPSARLASPKQGLRLPKSMSEMDVEALLDAPDVETPLGLRDRAMLE 139 Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-IITVELPDGFMKLLAM--------- 247 L SGLR S+ + L +KT G+ V L + L Sbjct: 140 VLYASGLRVSELVGMTLNQLNLLDGVVKTMGKGSKERLVPLGEIAQDWLLRYLKEARPLL 199 Query: 248 -TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAH 305 + F+ K M A + G+ K S H +R AT + GA Sbjct: 200 LAGQPCDAVFVTQRKAGMTRQMAWHLITQYAGRQGLAKVSPHVLRHAFATHLVNHGADLR 259 Query: 306 ELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 + G + + YT A R RL ++R Sbjct: 260 VVQLLLGHADISTTQIYTHVA-RERLKQLHAR 290 >gi|119026091|ref|YP_909936.1| tyrosine recombinase xerD [Bifidobacterium adolescentis ATCC 15703] gi|154488864|ref|ZP_02029713.1| hypothetical protein BIFADO_02172 [Bifidobacterium adolescentis L2-32] gi|118765675|dbj|BAF39854.1| tyrosine recombinase xerD [Bifidobacterium adolescentis ATCC 15703] gi|154083001|gb|EDN82046.1| hypothetical protein BIFADO_02172 [Bifidobacterium adolescentis L2-32] Length = 317 Score = 123 bits (309), Expect = 4e-26, Method: Composition-based stats. Identities = 45/296 (15%), Positives = 100/296 (33%), Gaps = 42/296 (14%) Query: 71 LKWLISEYRKSAH-WGSLAVNSRISFESYFDQ---IIRKSGDFDYRKITTK---HIRSGV 123 ++ LI ++ LA + +++S + + G D +TT+ + + Sbjct: 4 IERLIDQFLAYIDVERGLAKATVRAYDSDLRKYNGWLATQGIQDLNAVTTQDVERYIAFL 63 Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 + + S + L S+ ++A+ + V+ + V+ PK T T +++ Sbjct: 64 DDSGESARSKARRLASIHAFHRFALNEHVVSNDVAAQVKAPKGATTLPDVLTVDEVASLL 123 Query: 184 SFWSEGS------------------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK 225 + + EF+ +G R S++C A + + + Sbjct: 124 DAIPVSQNRPQSEGMADMPDDPAMLRDKALLEFMYATGARVSEACGANLDDVDLESNVAR 183 Query: 226 TQKTGTIIT-VELPDGFMKLLAM--------------TPIGKETFFINNDKQKMNATQFS 270 G+ V + + +A P + F+N ++++ Sbjct: 184 LMGKGSKQRLVPVGSYACEAIARYLKNGRPQLESKAKGPTERRALFLNKRGKRLSRQSVW 243 Query: 271 IWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 +A +A ++K H +R AT GA + G +V + YT Sbjct: 244 EIIRAAGERAHIDKPLHPHTLRHSFATHLIQGGADVRTVQELLGHASVTTTQIYTH 299 >gi|312130041|ref|YP_003997381.1| integrase family protein [Leadbetterella byssophila DSM 17132] gi|311906587|gb|ADQ17028.1| integrase family protein [Leadbetterella byssophila DSM 17132] Length = 282 Score = 123 bits (308), Expect = 4e-26, Method: Composition-based stats. Identities = 46/259 (17%), Positives = 95/259 (36%), Gaps = 15/259 (5%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP---SSAIQFLTSMR 141 L+ ++ S++ +Q+ D +I+T+ +R+ V S S + L S R Sbjct: 13 RRLSPHTIKSYKLDLEQLHTFLNGIDPSQISTEDLRAWVVSLSEDGLENRSINRKLASAR 72 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW----TKEDMQQFK-SFWSEGSQPRLAF 196 F + R++ ++ NP ++ K T++ +Q + + EG + +L Sbjct: 73 AFFTFLQRKKIISQNPADLIKSLKTPKPLPVFLEERNTQDLFEQLEFTEDFEGLRDKLLL 132 Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT----PIGK 252 E L +G+R S+ V+ L+N+ + K + L L+ P Sbjct: 133 ELLYGTGIRLSELISIQVKDLENDRVKV-LGKRSKYRIIPLHRTLQDLIKRYLELHPKND 191 Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMAT 310 + + + + K + S H +R AT + GA + + Sbjct: 192 THLLLTDKGEALYPVFVQRKVKHYLQQISTLTKTSPHVLRHTFATHLLNRGADLNAIKEL 251 Query: 311 YGWKTVDQAETYTKGADRI 329 G + + YT + + Sbjct: 252 LGHANLSATQIYTHNSIQK 270 >gi|150008883|ref|YP_001303626.1| tyrosine type site-specific recombinase [Parabacteroides distasonis ATCC 8503] gi|301311928|ref|ZP_07217850.1| integrase/recombinase XerC [Bacteroides sp. 20_3] gi|149937307|gb|ABR44004.1| tyrosine type site-specific recombinase [Parabacteroides distasonis ATCC 8503] gi|300830030|gb|EFK60678.1| integrase/recombinase XerC [Bacteroides sp. 20_3] Length = 302 Score = 123 bits (308), Expect = 4e-26, Method: Composition-based stats. Identities = 52/276 (18%), Positives = 103/276 (37%), Gaps = 25/276 (9%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS-----GDFDYRKITTKHIRSGV---E 124 LI ++ + + + + ++ DQ R G F+ +I + +RS + Sbjct: 2 LIDDFLNYLRYERNYSNYTIGAYSKDLDQFQRYVREHREGVFNPGEIDSDFVRSWIVSLM 61 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 K +P S + L+S++ FK+ +++ V+ NP V PK K +++ Sbjct: 62 DEKLSPVSVNRKLSSLKSFFKFLMKRGIVSANPLRLVSGPKTKKPLPYFIKDSELEALLD 121 Query: 185 FWS-----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELP 238 EG + RL E L +G+R S+ + +K T K + Sbjct: 122 GDGFDEDFEGVRNRLVIEMLYDTGMRRSELIGIRNVDVDYEAMQVKVTGKRNKQRLIPFA 181 Query: 239 DGFMKLLAMTP--------IGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHG 288 +G L+ E FF+ + +++ K + ++ + +S H Sbjct: 182 EGLKNLMLAYTEVRDREVEAAGEWFFVRKNGNQLSTGIVYNIVKKQLSEIPMLAKRSPHV 241 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 +R AT + GA + + G ++ YT Sbjct: 242 LRHSFATSMLNNGAELNAVKDLLGHSSLASTSVYTH 277 >gi|15804400|ref|NP_290440.1| site-specific tyrosine recombinase XerC [Escherichia coli O157:H7 EDL933] gi|15833995|ref|NP_312768.1| site-specific tyrosine recombinase XerC [Escherichia coli O157:H7 str. Sakai] gi|168750377|ref|ZP_02775399.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4113] gi|168753708|ref|ZP_02778715.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4401] gi|168763936|ref|ZP_02788943.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4501] gi|168768092|ref|ZP_02793099.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4486] gi|168775638|ref|ZP_02800645.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4196] gi|168780710|ref|ZP_02805717.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4076] gi|168801125|ref|ZP_02826132.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC508] gi|195938100|ref|ZP_03083482.1| site-specific tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4024] gi|208806813|ref|ZP_03249150.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4206] gi|208813099|ref|ZP_03254428.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4045] gi|208821301|ref|ZP_03261621.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4042] gi|209397621|ref|YP_002273328.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4115] gi|217326194|ref|ZP_03442278.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. TW14588] gi|254795807|ref|YP_003080644.1| site-specific tyrosine recombinase XerC [Escherichia coli O157:H7 str. TW14359] gi|261225585|ref|ZP_05939866.1| site-specific tyrosine recombinase [Escherichia coli O157:H7 str. FRIK2000] gi|261255631|ref|ZP_05948164.1| site-specific tyrosine recombinase [Escherichia coli O157:H7 str. FRIK966] gi|291285225|ref|YP_003502043.1| Tyrosine recombinase xerC [Escherichia coli O55:H7 str. CB9615] gi|34222932|sp|Q8X4T6|XERC_ECO57 RecName: Full=Tyrosine recombinase xerC gi|254799334|sp|B5YY58|XERC_ECO5E RecName: Full=Tyrosine recombinase xerC gi|12518679|gb|AAG59004.1|AE005612_7 site-specific recombinase, acts on cer sequence of ColE1, effects chromosome segregation at cell division [Escherichia coli O157:H7 str. EDL933] gi|13364217|dbj|BAB38164.1| site-specific recombinase XerC [Escherichia coli O157:H7 str. Sakai] gi|187768906|gb|EDU32750.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4196] gi|188015455|gb|EDU53577.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4113] gi|189001561|gb|EDU70547.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4076] gi|189358976|gb|EDU77395.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4401] gi|189362670|gb|EDU81089.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4486] gi|189365973|gb|EDU84389.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4501] gi|189376684|gb|EDU95100.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC508] gi|208726614|gb|EDZ76215.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4206] gi|208734376|gb|EDZ83063.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4045] gi|208741424|gb|EDZ89106.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4042] gi|209159021|gb|ACI36454.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC4115] gi|209753248|gb|ACI74931.1| putative phosphatase [Escherichia coli] gi|209753250|gb|ACI74932.1| putative phosphatase [Escherichia coli] gi|209753252|gb|ACI74933.1| putative phosphatase [Escherichia coli] gi|209753254|gb|ACI74934.1| putative phosphatase [Escherichia coli] gi|209753256|gb|ACI74935.1| putative phosphatase [Escherichia coli] gi|217322415|gb|EEC30839.1| tyrosine recombinase XerC [Escherichia coli O157:H7 str. TW14588] gi|254595207|gb|ACT74568.1| site-specific tyrosine recombinase [Escherichia coli O157:H7 str. TW14359] gi|290765098|gb|ADD59059.1| Tyrosine recombinase xerC [Escherichia coli O55:H7 str. CB9615] gi|320191096|gb|EFW65746.1| Tyrosine recombinase XerC [Escherichia coli O157:H7 str. EC1212] gi|320639294|gb|EFX08916.1| site-specific tyrosine recombinase XerC [Escherichia coli O157:H7 str. G5101] gi|320644679|gb|EFX13729.1| site-specific tyrosine recombinase XerC [Escherichia coli O157:H- str. 493-89] gi|320650004|gb|EFX18507.1| site-specific tyrosine recombinase XerC [Escherichia coli O157:H- str. H 2687] gi|320655350|gb|EFX23292.1| site-specific tyrosine recombinase XerC [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320660976|gb|EFX28419.1| site-specific tyrosine recombinase XerC [Escherichia coli O55:H7 str. USDA 5905] gi|320666100|gb|EFX33114.1| site-specific tyrosine recombinase XerC [Escherichia coli O157:H7 str. LSU-61] gi|326344267|gb|EGD68027.1| Tyrosine recombinase XerC [Escherichia coli O157:H7 str. 1125] gi|326347905|gb|EGD71619.1| Tyrosine recombinase XerC [Escherichia coli O157:H7 str. 1044] Length = 298 Score = 123 bits (308), Expect = 4e-26, Method: Composition-based stats. Identities = 41/270 (15%), Positives = 91/270 (33%), Gaps = 20/270 (7%) Query: 75 ISEYRKSAH-WGSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIRSGVESRKHTP 130 + Y + L+ + ++++ + II ++G ++++ +R+ + Sbjct: 8 VERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQNWQQCDAAMVRNFAVRSRRKG 67 Query: 131 SSAIQF---LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186 A L+++R F W V Q + NP V PK + +D+ + Sbjct: 68 LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKTPRHLPKNIDVDDINRLLDIDI 127 Query: 187 --SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMK 243 + R E + +GLR S+ ++HL K + + + Sbjct: 128 NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNALS 187 Query: 244 LLAMT-------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSA 294 + + F++ ++++A F K G+N H +R A Sbjct: 188 WIEHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRHSFA 247 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTK 324 T ++ + G + + YT Sbjct: 248 THMLESSGDLRGVQELLGHANLSTTQIYTH 277 >gi|304398153|ref|ZP_07380028.1| tyrosine recombinase XerC [Pantoea sp. aB] gi|304354439|gb|EFM18811.1| tyrosine recombinase XerC [Pantoea sp. aB] Length = 301 Score = 123 bits (308), Expect = 4e-26, Method: Composition-based stats. Identities = 38/259 (14%), Positives = 85/259 (32%), Gaps = 19/259 (7%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDY---RKITTKHIRSGVESRKHTPSSAIQF---LT 138 L+ ++ S+ ++ + + ++ +RS + SA L+ Sbjct: 20 RQLSPLTQSSYARQLAALVAIADEMKLSSWAQLEPAQVRSMAARSRRAGLSASSLALRLS 79 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQPRLA 195 ++R W V Q ++ NP V P++ + +++ Q + R Sbjct: 80 ALRSFLDWQVSQGLLSANPAKGVMTPRKARHLPKNIDVDEVNQLLEIDLDDPLAVRDRAM 139 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMKLLAMTPIGKET 254 E + GLR S+ +H+ + K V + + + +ET Sbjct: 140 LEVMYGGGLRLSELVNMDCRHVDLDSGEVWVVGKGSKERRVPIGRTAVTWIQHWLPLRET 199 Query: 255 F-------FINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAH 305 F F++ +++ F + G+ + H +R AT ++ Sbjct: 200 FGAQDDALFLSTRGNRISPRNVQKRFAEWGIRQGLASHIHPHKLRHSFATHLLESSGDLR 259 Query: 306 ELMATYGWKTVDQAETYTK 324 + G + + YT Sbjct: 260 AVQELLGHANLSTTQIYTH 278 >gi|23335402|ref|ZP_00120638.1| COG4974: Site-specific recombinase XerD [Bifidobacterium longum DJO10A] gi|227547607|ref|ZP_03977656.1| integrase/recombinase XerD family protein [Bifidobacterium longum subsp. infantis ATCC 55813] gi|239621212|ref|ZP_04664243.1| tyrosine recombinase xerD [Bifidobacterium longum subsp. infantis CCUG 52486] gi|312132535|ref|YP_003999874.1| integrase/recombinase [Bifidobacterium longum subsp. longum BBMN68] gi|317482508|ref|ZP_07941524.1| tyrosine recombinase XerD [Bifidobacterium sp. 12_1_47BFAA] gi|322689456|ref|YP_004209190.1| recombinase [Bifidobacterium longum subsp. infantis 157F] gi|227211862|gb|EEI79758.1| integrase/recombinase XerD family protein [Bifidobacterium longum subsp. infantis ATCC 55813] gi|239515673|gb|EEQ55540.1| tyrosine recombinase xerD [Bifidobacterium longum subsp. infantis CCUG 52486] gi|291516706|emb|CBK70322.1| tyrosine recombinase XerD subunit [Bifidobacterium longum subsp. longum F8] gi|311773469|gb|ADQ02957.1| probable integrase/recomBinase [Bifidobacterium longum subsp. longum BBMN68] gi|316916060|gb|EFV37466.1| tyrosine recombinase XerD [Bifidobacterium sp. 12_1_47BFAA] gi|320460792|dbj|BAJ71412.1| recombinase [Bifidobacterium longum subsp. infantis 157F] Length = 311 Score = 123 bits (308), Expect = 4e-26, Method: Composition-based stats. Identities = 43/271 (15%), Positives = 91/271 (33%), Gaps = 31/271 (11%) Query: 85 GSLAVNSRISFE----SYFDQIIRKSGDFD--YRKITTKHIRSGVESRKHTPSSAIQFLT 138 LA + ++E Y D + + K + + ++ + S + L Sbjct: 23 RGLATATVTAYESDIAKYIDWLETRGIHEPDAITKQDVEDYIAALDQAGESARSKARRLA 82 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG-------SQ 191 S+ ++A+ Q V + +V+ PK + T +++ + + G + Sbjct: 83 SIHEFHRFALGQHAVTADVSAAVKAPKGASTLPDVLTVDEVTRLLDAAAVGGSTDPVVLR 142 Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPD----------- 239 + EF+ +G R S++ A + + + + K V L Sbjct: 143 DKALLEFMYATGCRVSEATGANLDDIDLDEHIARLMGKGSKQRLVPLGSYACRAITAYLN 202 Query: 240 ----GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFS 293 + + + F+N ++++ KA +AG+ K H +R Sbjct: 203 AGRGELEQRSSAKIPERRALFLNKRGKRISRQSVWEIVKATGERAGITKPLHPHTLRHSF 262 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTK 324 AT GA + G +V + YT Sbjct: 263 ATHLIQGGADVRTVQELLGHASVTTTQIYTH 293 >gi|256379436|ref|YP_003103096.1| tyrosine recombinase XerD [Actinosynnema mirum DSM 43827] gi|255923739|gb|ACU39250.1| tyrosine recombinase XerD [Actinosynnema mirum DSM 43827] Length = 299 Score = 123 bits (308), Expect = 4e-26, Method: Composition-based stats. Identities = 46/251 (18%), Positives = 81/251 (32%), Gaps = 16/251 (6%) Query: 89 VNSRISFESYFDQIIRK-SGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWA 147 + Y + G + +G+ SSA + L ++R L ++A Sbjct: 29 DSYARDLRRYLAHLESAGLGLDAVTEAVVGDFLAGLRESGLAASSAARTLVAVRGLHRFA 88 Query: 148 VRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQPRLAFEFLLYSGL 204 R+ A +P V+ P + D+ + + R E L +G Sbjct: 89 HREGLTAADPAKDVQPPAAPRRLPKALPVADVLRLLDTAGDTPAALRDRALLELLYSTGA 148 Query: 205 RCSDSCRAGVQHLQN-NIFSIKTQKTGTIITVELPDGFMKLLAM---------TPIGKET 254 R S+ V + ++ K G V + + + G Sbjct: 149 RISEVVGLDVDDVDAAERTALLDGKGGKQRVVPVGRPALAAVEAYLVRARPVLAKRGGPA 208 Query: 255 FFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYG 312 F+N +++ K A +AGV S H +R AT +AGA + G Sbjct: 209 LFLNARGGRLSRQSAWQVLKTAAERAGVAAEVSPHTLRHSFATHLLEAGADVRVVQELLG 268 Query: 313 WKTVDQAETYT 323 +V + YT Sbjct: 269 HASVTTTQVYT 279 >gi|302338071|ref|YP_003803277.1| integrase family protein [Spirochaeta smaragdinae DSM 11293] gi|301635256|gb|ADK80683.1| integrase family protein [Spirochaeta smaragdinae DSM 11293] Length = 313 Score = 123 bits (308), Expect = 5e-26, Method: Composition-based stats. Identities = 51/292 (17%), Positives = 103/292 (35%), Gaps = 23/292 (7%) Query: 64 PRKKPTTLKWLISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFDYR-KITTKHIRS 121 P + + ++ L+ Y + +L+ + ++ D+ R D +++ +R Sbjct: 2 PETEKSEIRSLVDTYLRYLVAVRTLSPRTVDAYGVDLDRFCRFVEDEGCGLELSPSLVRR 61 Query: 122 GVESRKH--TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179 V K +P+S + L+S+R +++AV+Q NP SV R+ ++ + Sbjct: 62 FVAELKDALSPASCARALSSIRGFYRYAVKQGAAVSNPFASVRGKGRERRLPEVLSEVEA 121 Query: 180 QQFKSFWS---EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236 + SF G + +L E L +G R S++ + + ++K G + Sbjct: 122 SELLSFSENGFIGVRDKLLMELLYSTGARVSEAVGIDMLDIDTKKRTVKLLGKGDRQRIA 181 Query: 237 -------------LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283 LP ++ + + F+N +++ + + Sbjct: 182 YLGPQAMSALAAYLPYRRERVASDKKDAVQALFLNAHGERLTRRGAGFILRKHQERLASG 241 Query: 284 KS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 K H R AT D GA + G + YT RL Sbjct: 242 KRLHPHLFRHSFATHLLDRGADIRTVQELLGHADLSTTGIYTH-VSLKRLQD 292 >gi|323964056|gb|EGB59546.1| tyrosine recombinase XerC [Escherichia coli M863] gi|327250661|gb|EGE62367.1| tyrosine recombinase XerC [Escherichia coli STEC_7v] Length = 298 Score = 123 bits (308), Expect = 5e-26, Method: Composition-based stats. Identities = 43/270 (15%), Positives = 94/270 (34%), Gaps = 20/270 (7%) Query: 75 ISEYRKSAH-WGSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIRSGVESRKHTP 130 + Y + L+ + ++++ + II ++G +++ +R+ + Sbjct: 8 VERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDAAMVRNFAVRSRRKG 67 Query: 131 SSAIQF---LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186 A L+++R F W V Q + NP V PK + +D+ + Sbjct: 68 LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDINRLLDIDI 127 Query: 187 --SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT--------VE 236 + R E + +GLR S+ ++HL + G+ V Sbjct: 128 NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAVA 187 Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSA 294 + ++ L + + F++ ++++A F K G+N H +R A Sbjct: 188 WIEHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRHSFA 247 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTK 324 T ++ + G + + YT Sbjct: 248 THMLESSGDLRGVQELLGHANLSTTQIYTH 277 >gi|269958271|ref|YP_003328058.1| tyrosine recombinase [Anaplasma centrale str. Israel] gi|269848100|gb|ACZ48744.1| tyrosine recombinase [Anaplasma centrale str. Israel] Length = 312 Score = 123 bits (308), Expect = 5e-26, Method: Composition-based stats. Identities = 46/293 (15%), Positives = 105/293 (35%), Gaps = 36/293 (12%) Query: 77 EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITT-----KHIRSGVESRKHTPS 131 EY S ++ N+ S+ S + + G + R + + + SR ++P+ Sbjct: 12 EYLVSGR--CVSPNTSSSYRSDLEDLAEFLGRRNLRMVDASAADLRAYVRSLNSRGYSPA 69 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS---- 187 + + + ++R L+ + + +P +++ K + T +++ + Sbjct: 70 TISRRVAAIRGLYGFLYGDRIIDGDPAANLDSCKLGRPLPKVLTVDEVDKLLRAAGSDLS 129 Query: 188 -EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--------NNIFSIKTQKTGTIITVELP 238 EG + L SG+R S+ G ++ + + K G + L Sbjct: 130 VEGRRTAAIVNILYSSGVRISELINLGFYDIESMLKEQRSDVGHLVIKGKAGRERLILLN 189 Query: 239 DGFMKLLAMTPIGKETFFINNDKQKM------------NATQFSIWFKAKATKAGVN--- 283 + + + ++ F + + + + KA A AGV+ Sbjct: 190 EVAIASIVAYLAVRDHFIVGQKSESRWLFPGAKFDQCISRQRVGQLLKALAIVAGVDPKR 249 Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKN 335 S H +R AT + G+ + G ++ + YT A DR++ ++ Sbjct: 250 ISPHKLRHSFATHLLNNGSNVVFIQKMLGHASLSTTQIYTYVANDRLKEALQT 302 >gi|172034831|ref|YP_001798608.1| integrase/recombinase [Cyanothece sp. ATCC 51142] gi|171701595|gb|ACB54574.1| probable integrase/recombinase [Cyanothece sp. ATCC 51142] Length = 290 Score = 123 bits (308), Expect = 5e-26, Method: Composition-based stats. Identities = 47/252 (18%), Positives = 100/252 (39%), Gaps = 13/252 (5%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES---RKHTPSSAIQFLTSMR 141 L + ++ ++ +Q + + + + + V+ + ++ +S ++ ++ Sbjct: 29 SGLRLGTQKTYARTVNQFLGFV-EKPLVNVLLEDLTRWVDLLFIKDYSQNSIALKISIIK 87 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGI-RPWTKEDMQQFKSFWSEGSQPRLAFEFLL 200 LF +A + Y+ +N +V+ P R + +++ EG + R + Sbjct: 88 SLFSYAWKIGYLPLNIAKAVKAPSSVNALHERILEQPEVKALIEAAKEG-RDRTILTLIY 146 Query: 201 YSGLRCSDSCRAGVQHLQ---NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET--F 255 +GLR +++ + L+ + T K G + TV + D K L P ++T Sbjct: 147 ATGLRATEALSINWRDLRPRKQGGQATITGKGGKVRTVLISDNLWKELKKLPRSQKTEAV 206 Query: 256 FINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGW 313 F +++ Q K A KAG+N+ S H +R A S + G LM + G Sbjct: 207 FTTRFGNRLDRHQLHRIVKKTAEKAGINEHTSTHWLRHAHACHSLENGCDIDVLMRSLGH 266 Query: 314 KTVDQAETYTKG 325 ++ Y Sbjct: 267 SSLTITSKYLHA 278 >gi|196047758|ref|ZP_03114951.1| tyrosine recombinase XerC [Bacillus cereus 03BB108] gi|196021406|gb|EDX60120.1| tyrosine recombinase XerC [Bacillus cereus 03BB108] Length = 299 Score = 123 bits (308), Expect = 5e-26, Method: Composition-based stats. Identities = 44/272 (16%), Positives = 96/272 (35%), Gaps = 26/272 (9%) Query: 85 GSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIRSGV---ESRKHTPSSAIQFLT 138 + + + S+++ + + + G + IT +R + K S + ++ Sbjct: 18 RNYSKYTIASYQNDLEHFVQFMEREGISSFLDITYADVRLYLTTLHDEKLARKSVARKVS 77 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRL 194 S+R L+++ +R+ Y NP PK++ + E++++ G + + Sbjct: 78 SLRSLYRFLMREGYRKDNPFALASLPKKELSIPKFLYAEELEELFEVSDTETPLGQRNQA 137 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE------------LPDGF 241 E + +G+R S+ + + + +I K + + +G Sbjct: 138 LLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQRYIPFGSYAQDALITYIENGR 197 Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299 +L T F+N + + KA + S H +R AT D Sbjct: 198 KQLAEKTEEQSHMVFLNAKGTPLTSRGVRYVLNELIKKASLTMRISPHMLRHTFATHMLD 257 Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRL 331 GA + G + + + YT + RL Sbjct: 258 EGADLRTVQELLGHENLSATQIYTH-VSKERL 288 >gi|229174497|ref|ZP_04302029.1| Tyrosine recombinase xerC [Bacillus cereus MM3] gi|228609057|gb|EEK66347.1| Tyrosine recombinase xerC [Bacillus cereus MM3] Length = 299 Score = 123 bits (308), Expect = 5e-26, Method: Composition-based stats. Identities = 43/272 (15%), Positives = 96/272 (35%), Gaps = 26/272 (9%) Query: 85 GSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIRSGV---ESRKHTPSSAIQFLT 138 + + + S+++ + + + G + +T +R + K S + ++ Sbjct: 18 RNYSKYTIASYQNDLEHFVQFMEREGISSFLDVTYADVRLYLTTLHDEKLARKSVARKVS 77 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRL 194 S+R L+++ +R+ Y NP PK++ + E++++ G + + Sbjct: 78 SLRSLYRFLMREGYRKDNPFALASLPKKELSIPKFLYAEELEELFEVADTETPLGQRNQA 137 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE------------LPDGF 241 E + +G+R S+ + + + +I K + + +G Sbjct: 138 LLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQRYIPFGSYAQDALITYIENGR 197 Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299 +L T F+N + + KA + S H +R AT D Sbjct: 198 KQLAHKTEEHSHMVFLNAKGTPLTSRGVRYVLNELIKKASLTMRISPHMLRHTFATHMLD 257 Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRL 331 GA + G + + + YT + RL Sbjct: 258 EGADLRTVQELLGHENLSTTQIYTH-VSKERL 288 >gi|160884990|ref|ZP_02065993.1| hypothetical protein BACOVA_02986 [Bacteroides ovatus ATCC 8483] gi|156109340|gb|EDO11085.1| hypothetical protein BACOVA_02986 [Bacteroides ovatus ATCC 8483] Length = 405 Score = 123 bits (308), Expect = 5e-26, Method: Composition-based stats. Identities = 52/226 (23%), Positives = 91/226 (40%), Gaps = 22/226 (9%) Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR--PWTKEDMQQFKS 184 + A+ + + + + +AV + +A NPC V K + +R + E+MQ S Sbjct: 180 RSKGEGALDYYSKFKKVINYAVDNDVIAKNPCKGV-VCKCDKQVLRKDVLSLEEMQALIS 238 Query: 185 FWSEGSQP--RLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTG-----TIITV 235 + P R AF F LY+G+R D ++ N I S + KT + + + Sbjct: 239 THYDNENPEIRRAFIFCLYTGIRFCDVQDLKYSNVDYSNKILSFEQNKTKGHSANSGVVI 298 Query: 236 ELPDGFMKLLAMTPIGK---ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290 L D ++L+ + ET F + +AT + +AG+ K + H R Sbjct: 299 PLNDDLLQLIGEPHTEQYEQETIF-----RLPSATMCLKALRRWTKRAGITKHITWHCAR 353 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336 A + GA + + G + E YT+ D ++ NS Sbjct: 354 HSFAVNILNNGANIKTVASLLGHSGLKHTEKYTRAVDSLKEAAINS 399 >gi|170769828|ref|ZP_02904281.1| tyrosine recombinase XerC [Escherichia albertii TW07627] gi|170121266|gb|EDS90197.1| tyrosine recombinase XerC [Escherichia albertii TW07627] Length = 298 Score = 123 bits (308), Expect = 5e-26, Method: Composition-based stats. Identities = 41/270 (15%), Positives = 90/270 (33%), Gaps = 20/270 (7%) Query: 75 ISEYRKSAH-WGSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIRSGVESRKHTP 130 + Y + L+ + ++++ + II ++G +++ +R+ + Sbjct: 8 VERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDAAMVRNFAVRSRRKG 67 Query: 131 SSAIQF---LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186 A L+++R F W V Q + NP V PK + +D+ + Sbjct: 68 LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDINRLLDIDI 127 Query: 187 --SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMK 243 + R E + +GLR S+ ++HL K + + + Sbjct: 128 NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAVA 187 Query: 244 LLAMTP-------IGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSA 294 + + F++ ++++A F K G+N H +R A Sbjct: 188 WIEHWFDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRHSFA 247 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTK 324 T ++ + G + + YT Sbjct: 248 THMLESSGDLRGVQELLGHANLSTTQIYTH 277 >gi|302389546|ref|YP_003825367.1| integrase family protein [Thermosediminibacter oceani DSM 16646] gi|302200174|gb|ADL07744.1| integrase family protein [Thermosediminibacter oceani DSM 16646] Length = 310 Score = 123 bits (308), Expect = 5e-26, Method: Composition-based stats. Identities = 46/284 (16%), Positives = 95/284 (33%), Gaps = 33/284 (11%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSGV---- 123 K+ I ++ + +L+ + +E + + D IT + I++ + Sbjct: 6 FKFAIQDFLDDRKFKNLSPETLKGYEITLKEFHNYCTDNNLIDTSDITPRVIKNYLIHCQ 65 Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAI--NPCLSVERPKRKTEGIRPWTKEDMQQ 181 R + P + + ++++ F + E NP + K + I +T ++Q Sbjct: 66 NERSNNPVTLNHKIRNLKIFFNYLEEIEIYDEKNNPAKPIPYLKEDVK-IEVFTDYQIRQ 124 Query: 182 FKSFWSE---------GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTG 230 +++ + LL +G+R + +H+ N + +I K Sbjct: 125 MLTYYRRLKTRDKAFWAYRDYTIIVTLLGTGIRLGELVNLQWRHIDFVNQVMTI-FGKKR 183 Query: 231 TIITVELPDGFMKLLAMTPIG--------KETFFINNDKQKMNATQFSIWFKAKATKAG- 281 ++ L + +K LA + + F+N+ + M A FK Sbjct: 184 IQRSIPLTEKLVKELAEFKVFCERYFGKLNDYVFVNSKNEPMTADAVKCMFKRLKEIMNF 243 Query: 282 --VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 V SAH R A G L G ++ Y Sbjct: 244 RDVRLSAHTFRHTFAHRFLMNGGDVFSLQKILGHSKIEMTMRYV 287 >gi|332159818|ref|YP_004296395.1| site-specific tyrosine recombinase XerC [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|318607639|emb|CBY29137.1| tyrosine recombinase XerC [Yersinia enterocolitica subsp. palearctica Y11] gi|325664048|gb|ADZ40692.1| site-specific tyrosine recombinase XerC [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330862565|emb|CBX72719.1| tyrosine recombinase xerC [Yersinia enterocolitica W22703] Length = 303 Score = 123 bits (308), Expect = 5e-26, Method: Composition-based stats. Identities = 42/259 (16%), Positives = 89/259 (34%), Gaps = 19/259 (7%) Query: 85 GSLAVNSRISFESYFDQIIR---KSGDFDYRKITTKHIRSGVESRKHTP---SSAIQFLT 138 L+ + S+ ++ + G ++ + +RS V K SS L+ Sbjct: 23 RQLSPLTITSYRRQLQALMEMGEQMGLAHWQTLDAAQVRSLVSRSKRAGLHSSSLALRLS 82 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQPRLA 195 ++R W V Q + NP V P+ + +++ + + R Sbjct: 83 ALRSFLNWLVSQGVLQANPAKGVSTPRSGRHLPKNIDVDEVDKLLDIDLNDPLAVRDRAM 142 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI--------ITVELPDGFMKLLAM 247 E + +GLR S+ +H+ + G+ V+ + +++L + Sbjct: 143 LEVMYGAGLRLSEMVGMNCKHVDLASGDVWVMGKGSKERKVPIGKTAVKWLEHWLELREL 202 Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAH 305 + F+ N ++++A F K GV + H +R AT ++ Sbjct: 203 FEPQDDAIFLANTGKRISARNVQKRFAEWGVKQGVSSHIHPHKLRHSFATHMLESSGDLR 262 Query: 306 ELMATYGWKTVDQAETYTK 324 + G + + YT Sbjct: 263 AVQELLGHANLTTTQIYTH 281 >gi|256841123|ref|ZP_05546630.1| tyrosine recombinase XerC [Parabacteroides sp. D13] gi|256736966|gb|EEU50293.1| tyrosine recombinase XerC [Parabacteroides sp. D13] Length = 302 Score = 123 bits (308), Expect = 5e-26, Method: Composition-based stats. Identities = 53/276 (19%), Positives = 103/276 (37%), Gaps = 25/276 (9%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS-----GDFDYRKITTKHIRSGV---E 124 LI ++ + + + + ++ DQ R G FD +I + +RS + Sbjct: 2 LIDDFLNYLRYERNYSNYTIGAYSKDLDQFQRYVREHREGVFDPGEIDSDFVRSWIVCLM 61 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 K +P S + L+S++ FK+ +++ V+ NP V PK K +++ Sbjct: 62 DEKFSPVSVNRKLSSLKSFFKFLMKRGIVSANPLRLVSGPKTKKPLPCFIKDSELEALLD 121 Query: 185 FWS-----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELP 238 EG + RL E L +G+R S+ + +K T K + Sbjct: 122 GDGFDEDFEGVRNRLVIEMLYDTGMRRSELIGIRNVDVDYEAMQVKVTGKRNKQRLIPFA 181 Query: 239 DGFMKLLAMTP--------IGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHG 288 +G L+ E FF+ + +++ K + ++ + +S H Sbjct: 182 EGLKNLMLAYTEVRDREVEAAGEWFFVRKNGNQLSTGIVYNIVKKQLSEIPMLAKRSPHV 241 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 +R AT + GA + + G ++ YT Sbjct: 242 LRHSFATSMLNNGAELNAVKDLLGHSSLASTSVYTH 277 >gi|126651787|ref|ZP_01723989.1| site-specific tyrosine recombinase XerC [Bacillus sp. B14905] gi|126591465|gb|EAZ85572.1| site-specific tyrosine recombinase XerC [Bacillus sp. B14905] Length = 355 Score = 123 bits (308), Expect = 5e-26, Method: Composition-based stats. Identities = 53/285 (18%), Positives = 96/285 (33%), Gaps = 41/285 (14%) Query: 85 GSLAVNSRISFESYFDQIIR---------KSGDFDYRKITTKHIRSGVE----------- 124 + +R +E R + I T I + Sbjct: 56 KGKSQRTRKEYEYDLTLFFRFHTAVQEDLDIENLAVIDIATITIEEIRDITLEDLYYFME 115 Query: 125 ----SRKHTPSSAIQFLTSMRVLFKWAV-RQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179 R ++ +S + + +++ FK+ ++ + NP +E PK + ++ Sbjct: 116 YCEVQRGNSAASRARKVATLKSFFKYLKGKRRLIEENPAEELETPKIGRKRPIYMNFQEA 175 Query: 180 QQFKSFWSEG---SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236 QF + F L G+R ++ C+ + +Q ++ K TV Sbjct: 176 TQFIDGIPANQASPRNYCMMMFFLNLGIRVTELCQLNITSIQGRHLTV-VGKGNKERTVY 234 Query: 237 LPDGFMKLLA------MTP---IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--- 284 L D M+ LA TP G E F++ + + K ++G+ K Sbjct: 235 LNDSCMQALADYENSGKTPYKGNGDEPLFVSQKGTRFTRQTVAKIVKRINQQSGLQKERL 294 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 + H +R SAT+ AGA L G +V + YT D Sbjct: 295 TPHKLRHTSATMMYKAGADIRSLQHILGHSSVATTQIYTHIEDEQ 339 >gi|86133261|ref|ZP_01051843.1| phage integrase family protein [Polaribacter sp. MED152] gi|85820124|gb|EAQ41271.1| phage integrase family protein [Polaribacter sp. MED152] Length = 385 Score = 123 bits (308), Expect = 5e-26, Method: Composition-based stats. Identities = 48/275 (17%), Positives = 107/275 (38%), Gaps = 16/275 (5%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES----RK 127 K L++ + + ++ ++ + I + + + +E R Sbjct: 91 KKLLNGFYLYMKGKRYSESTLKTYTFFIADFINFHSKKACSDLDNRDVELFIEKVFIERN 150 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 ++ SS QF++++++ + + + + RPK+ + ++E++ + S + Sbjct: 151 YSVSSQRQFISALKIFTNYYPSTKIND----IELTRPKKSKKLPSVLSQEEVLRIISVTT 206 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQKTGTIITVELPDGFMKLL 245 + R L GLR S+ ++ H++ +K+ K V L + FM LL Sbjct: 207 -NLKHRAIIALLYSCGLRISELINLKLKDFHIERKQLIVKSGKGRKDRYVSLAESFMPLL 265 Query: 246 AM---TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300 + KE F + +K +A+ + K KAG+ + + H +R AT + Sbjct: 266 KNYYYSYEPKEFFVEGMNGEKYSASSVRAFLKKSCKKAGIQRAVTPHTLRHSYATHLLEN 325 Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335 G + + G + YT + + I+N Sbjct: 326 GVDIRYIQSLLGHSRPETTMIYTHVKRKDLMQIQN 360 >gi|194434030|ref|ZP_03066300.1| tyrosine recombinase XerC [Shigella dysenteriae 1012] gi|194417688|gb|EDX33787.1| tyrosine recombinase XerC [Shigella dysenteriae 1012] gi|320178102|gb|EFW53082.1| Tyrosine recombinase XerC [Shigella boydii ATCC 9905] gi|332084672|gb|EGI89860.1| tyrosine recombinase XerC [Shigella boydii 5216-82] gi|332084963|gb|EGI90145.1| tyrosine recombinase XerC [Shigella dysenteriae 155-74] Length = 298 Score = 123 bits (308), Expect = 5e-26, Method: Composition-based stats. Identities = 45/272 (16%), Positives = 92/272 (33%), Gaps = 24/272 (8%) Query: 75 ISEYRKSAH-WGSLAVNSRISFESYFDQII--------RKSGDFDYRKITTKHIRSGVES 125 + Y + L+ + ++++ + II + D + +RS Sbjct: 8 VERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLKNWQQCDVTMVRNFAVRSRR-- 65 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + +S L+++R F W V Q + NP V PK + +DM + Sbjct: 66 KGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDI 125 Query: 186 W---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT-------- 234 + R E + +GLR S+ ++HL + G+ Sbjct: 126 DINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNA 185 Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKF 292 V + ++ L + + F++ ++++A F K G+N H +R Sbjct: 186 VAWIEHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRHS 245 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTK 324 AT ++ + G + + YT Sbjct: 246 FATHMLESSGDLRGVQELLGHANLSTTQIYTH 277 >gi|325278828|ref|YP_004251370.1| integrase family protein [Odoribacter splanchnicus DSM 20712] gi|324310637|gb|ADY31190.1| integrase family protein [Odoribacter splanchnicus DSM 20712] Length = 409 Score = 123 bits (308), Expect = 5e-26, Method: Composition-based stats. Identities = 56/249 (22%), Positives = 104/249 (41%), Gaps = 24/249 (9%) Query: 92 RISFESYFDQIIRKSG--DFDYRKITTKHIRSG----VESRKHTPSSAIQFLTSMRVLFK 145 + + + I ++ D +K+ + I + + RK P++ + L + + K Sbjct: 138 KDVYNHTINFIKKQYNMSDIPLKKLDYQFIAAFQQYLLTDRKQIPNTVNKTLQKVIEVAK 197 Query: 146 WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA-----FEFLL 200 +AV+ Y+ NP + ER K T+ I T E+++Q +++ +Q RL + F + Sbjct: 198 YAVKCGYLEKNPFNAYERLKVGTKSITFLTDEEIEQLENYH--FTQHRLEQVKDLYLFSV 255 Query: 201 YSGLRCSDSCRAGVQHLQNN-----IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF 255 Y+GL ++ HL ++ QKTG + + L K+L+ G E Sbjct: 256 YTGLAYREAANLCKAHLIKGLDNEIWINMTRQKTGNSMEIPLLPPAQKILSKYITGNEP- 314 Query: 256 FINNDKQKM-NATQFSIWFKAKATKAGVNK--SAHGVRKFSA-TISADAGATAHELMATY 311 IN M + + + + K A G+NK + H RK A TI + + Sbjct: 315 -INKPLLPMISNQRMNSYLKEIAEILGINKRLTTHTARKTFASTILLNNDVPIEIVSKLL 373 Query: 312 GWKTVDQAE 320 G ++ E Sbjct: 374 GHSSIRVTE 382 >gi|309796245|ref|ZP_07690655.1| tyrosine recombinase XerC [Escherichia coli MS 145-7] gi|308120127|gb|EFO57389.1| tyrosine recombinase XerC [Escherichia coli MS 145-7] Length = 298 Score = 123 bits (308), Expect = 5e-26, Method: Composition-based stats. Identities = 42/270 (15%), Positives = 90/270 (33%), Gaps = 20/270 (7%) Query: 75 ISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITT------KHIRSGVESRK 127 + Y + L+ + ++++ + II + + + ++ + Sbjct: 8 VERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRKG 67 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186 +S L+++R F W V Q + NP V PK + +DM + Sbjct: 68 LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDIDI 127 Query: 187 --SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT--------VE 236 + R E + +GLR S+ + HL + G+ V Sbjct: 128 NDPLAVRDRAMLEVMYGAGLRLSELVGLDINHLDLESGEVWVMGKGSKERRLPIGRNAVA 187 Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSA 294 + ++ L + + F++ ++++A F K G+N H +R A Sbjct: 188 WIEHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRHSFA 247 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTK 324 T ++ + G + + YT Sbjct: 248 THMLESSGDLRGVQELLGHANLSTTQIYTH 277 >gi|254511455|ref|ZP_05123522.1| tyrosine recombinase XerD [Rhodobacteraceae bacterium KLH11] gi|221535166|gb|EEE38154.1| tyrosine recombinase XerD [Rhodobacteraceae bacterium KLH11] Length = 318 Score = 123 bits (308), Expect = 5e-26, Method: Composition-based stats. Identities = 49/297 (16%), Positives = 100/297 (33%), Gaps = 33/297 (11%) Query: 66 KKPTTLKWLISEYRKS-AHWGSLAVNSRISFESYFDQ-----IIRKSGDFDYRKITTKHI 119 P T IS + ++ A A N+ +++ + RKSG + + + Sbjct: 2 AAPATQDLWISTFLEAQAAELGAANNTLLAYGRDLKDFADWLMRRKSGFAEADRDQIEGY 61 Query: 120 RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179 +++ + ++ + L++++ L+++A + + NP + ++ P R + ++ Sbjct: 62 LIDCDAQGLSRATRARRLSAIKQLYRFAFEEGWREANPAIQIKGPGRAKRLPKTLDVPEV 121 Query: 180 QQFKSFW-----SEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGT 231 + S + R E L +G+R ++ V + + + K G Sbjct: 122 DRLLEAARRTGRSAADRIRNTCLMELLYATGMRVTELVSLPVSSARGDPRMLLVLGKGGK 181 Query: 232 IITVELPDGFMKLLA--------------MTPIGKETFFINNDKQK--MNATQFSIWFKA 275 V L LA F + + + +F + K Sbjct: 182 ERMVPLSPPARDALAEWLKQRDDAEERTVAKGGQASRFLFPSRGKSGYLTRHRFFLLVKE 241 Query: 276 KATKAGV---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 A + GV + H +R AT GA + G V E YT D Sbjct: 242 LAVEGGVSPAKVTPHTLRHAFATHLLANGADLRSIQTLLGHADVATTEIYTHVLDER 298 >gi|323342009|ref|ZP_08082242.1| integrase/recombinase XerD [Erysipelothrix rhusiopathiae ATCC 19414] gi|322464434|gb|EFY09627.1| integrase/recombinase XerD [Erysipelothrix rhusiopathiae ATCC 19414] Length = 304 Score = 123 bits (308), Expect = 5e-26, Method: Composition-based stats. Identities = 40/264 (15%), Positives = 87/264 (32%), Gaps = 21/264 (7%) Query: 88 AVNSRISFESYFDQIIRKSGDFDYRKITTKH---IRSGVESRKH--TPSSAIQFLTSMRV 142 A + S+ + +Q I + + IR ++ K+ S+ + +R Sbjct: 19 AALTVASYRNDLNQYIEYLEHESVSSLESVDAEVIRKYIDDIKNDYAASTIQHKIVVIRQ 78 Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ---FKSFWSEGSQPRLAFEFL 199 ++ + + +P V + T + + +++ F + L Sbjct: 79 FHQYLLNSGQLQHDPTAFVSLKNKGTRLPTIVSDDTIRKLFSFDRVTGKDFMDYAILLLL 138 Query: 200 LYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELP----DGFMKLLAMTPIG--- 251 GLR S+ + + ++ K + L DG + + + Sbjct: 139 YRCGLRVSECVHLEFSQVYLDQKWLRILGKGNKERMIPLSIDAIDGLSEYINIIRPQWMI 198 Query: 252 --KETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHEL 307 E FIN + ++ K++ + G+ SAH +R AT D G + Sbjct: 199 QPTEQIFINAKGKGISRQYIDSMIKSRCKEMGILTPISAHTLRHSFATAILDTGVDLRII 258 Query: 308 MATYGWKTVDQAETYTKGADRIRL 331 G + + + YT ++ L Sbjct: 259 QELLGHQDISTTQIYTH-VNKKTL 281 >gi|157827055|ref|YP_001496119.1| site-specific tyrosine recombinase XerD [Rickettsia bellii OSU 85-389] gi|157802359|gb|ABV79082.1| site-specific tyrosine recombinase XerD [Rickettsia bellii OSU 85-389] Length = 305 Score = 123 bits (308), Expect = 5e-26, Method: Composition-based stats. Identities = 49/286 (17%), Positives = 106/286 (37%), Gaps = 38/286 (13%) Query: 75 ISEYRKSA-HWGSLAVNSRISFESYFDQI-----IRKSGDFDYRKITTKHIRSGVESRKH 128 IS++ + +L+ NS +S++ +K + + ++ + Sbjct: 4 ISQFLEMLLAERALSKNSILSYKRDLLDFHNYLAKQKLSELNITTDNIRNWVEYLAENGL 63 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-- 186 S + +++++ +++ + + + +NP L+++ PK + + + +D++ + Sbjct: 64 QARSINRKISTIKSYYEFLISENHTNLNPLLNIDLPKYQNKLPEILSIDDIKSLLEYCSQ 123 Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK--------TGTIITV 235 EG++ L SGLR S+ + + +N S + +K I V Sbjct: 124 DISPEGARLNAMIHLLYASGLRVSELVSLKLSDILSNKVSREVKKIFSVLGKGNKERIIV 183 Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQK--------------MNATQFSIWFKAKATKAG 281 L+ + F+N K K M F+I K+ A AG Sbjct: 184 INEPAINSLVKYLVVRDN--FVNKTKPKNLIYLFPSSAAAGYMTRQNFAILLKSAALYAG 241 Query: 282 VN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 +N S H +R A+ + GA + G + + YT Sbjct: 242 LNPEHISPHVLRHSFASHLLEGGADLRVIQELLGHADISTTQIYTH 287 >gi|229104393|ref|ZP_04235062.1| Tyrosine recombinase xerC [Bacillus cereus Rock3-28] gi|228679091|gb|EEL33299.1| Tyrosine recombinase xerC [Bacillus cereus Rock3-28] Length = 299 Score = 123 bits (308), Expect = 5e-26, Method: Composition-based stats. Identities = 41/272 (15%), Positives = 89/272 (32%), Gaps = 26/272 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV------ESRKHTPSSAIQFLT 138 + + + S+++ + +R K S + ++ Sbjct: 18 RNYSKYTIASYQNDLEHFVRFMEREGISSFLDVTYADVRLYLTTLHDEKLARKSVARKVS 77 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRL 194 S+R L+++ +R+ Y NP PK++ + E++++ G + + Sbjct: 78 SLRSLYRFLMREGYRKDNPFALASLPKKELSIPKFLYAEELEELFEVSDTETPLGQRNQA 137 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE------------LPDGF 241 E + +G+R S+ + + + +I K + + +G Sbjct: 138 LLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQRYIPFGSYAQDALITYMENGR 197 Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299 +L T F+N + + KA + S H +R AT D Sbjct: 198 KQLANKTEEQSHMVFLNAKGTPLTSRGVRYVLNELIKKASLTMRISPHMLRHTFATHMLD 257 Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRL 331 GA + G + + + YT + RL Sbjct: 258 EGADLRTVQELLGHENLSTTQIYTH-VSKERL 288 >gi|322691424|ref|YP_004220994.1| recombinase [Bifidobacterium longum subsp. longum JCM 1217] gi|320456280|dbj|BAJ66902.1| recombinase [Bifidobacterium longum subsp. longum JCM 1217] Length = 311 Score = 123 bits (308), Expect = 5e-26, Method: Composition-based stats. Identities = 43/271 (15%), Positives = 91/271 (33%), Gaps = 31/271 (11%) Query: 85 GSLAVNSRISFE----SYFDQIIRKSGDFD--YRKITTKHIRSGVESRKHTPSSAIQFLT 138 LA + ++E Y D + + K + + ++ + S + L Sbjct: 23 RGLATATVTAYESDIAKYIDWLETRGIHEPDAITKQDVEDYIAALDQAGESARSKARRLA 82 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG-------SQ 191 S+ ++A+ Q V + +V+ PK + T +++ + + G + Sbjct: 83 SIHEFHRFALGQHAVTADVSAAVKAPKGASTLPDVLTVDEVTRLLDAAAAGGSTDPVVLR 142 Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPD----------- 239 + EF+ +G R S++ A + + + + K V L Sbjct: 143 DKALLEFMYATGCRVSEATGANLDDIDLDEHIARLMGKGSKQRLVPLGSYACRAITAYLN 202 Query: 240 ----GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFS 293 + + + F+N ++++ KA +AG+ K H +R Sbjct: 203 AGRGELEQRSSAKIPERRALFLNKRGKRISRQSVWEIVKATGERAGITKPLHPHTLRHSF 262 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTK 324 AT GA + G +V + YT Sbjct: 263 ATHLIQGGADVRTVQELLGHASVTTTQIYTH 293 >gi|239947433|ref|ZP_04699186.1| integrase [Rickettsia endosymbiont of Ixodes scapularis] gi|239921709|gb|EER21733.1| integrase [Rickettsia endosymbiont of Ixodes scapularis] Length = 387 Score = 123 bits (308), Expect = 5e-26, Method: Composition-based stats. Identities = 47/284 (16%), Positives = 100/284 (35%), Gaps = 13/284 (4%) Query: 52 TGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDY 111 G P E ++ T K Y + + + D+ + Sbjct: 90 QGYNPIEEKARLSKEP--TFKEFYDRYL--DEYSKINNKRWKDYADSVDRYAKHLYPRKI 145 Query: 112 RKITTKHIRSGVESR-KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170 I I+ + K A +FL + +F A+ E + INP + +++ K ++ Sbjct: 146 STIQKTDIQELFNNLTKTGKYGANRFLEVLSPVFSKAIEWELLTINPVIGIKKHKEQSR- 204 Query: 171 IRPWTKEDMQQFKSFWSEGSQPRLA--FEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKT 226 R T+E++ +F + ++ + F LY+ +R + + + + + Sbjct: 205 DRYLTREEIPRFFTAIADEQNQVMQDFFLIALYTSVRKDNLLTMKWEQVSFTDKQLYLPE 264 Query: 227 QKTGTIITVELPDGFMKLLAMTPIGKET--FFINNDKQKMNATQFSIWFKAKATKAGV-N 283 K G + L D +++L + F + + + +K KAG+ N Sbjct: 265 TKNGDPHRLPLLDQAVEILKARKEQSTSMWVFPSETSSSGHLQEPKKAWKRICKKAGIEN 324 Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 H +R+ + A GA + + + YT+ A+ Sbjct: 325 LRIHDLRRTIPSWMAMTGANQYVIGQLLNHRDPRSTAVYTRLAN 368 >gi|154496301|ref|ZP_02034997.1| hypothetical protein BACCAP_00589 [Bacteroides capillosus ATCC 29799] gi|150274384|gb|EDN01461.1| hypothetical protein BACCAP_00589 [Bacteroides capillosus ATCC 29799] Length = 301 Score = 123 bits (308), Expect = 5e-26, Method: Composition-based stats. Identities = 55/281 (19%), Positives = 95/281 (33%), Gaps = 26/281 (9%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129 TL + + G + +S E +I I ++S S + Sbjct: 2 TLGQWFPLWLDTYKRGVIRDSSLHQLELLARRIPADLMKRPLSAILPMDLQSFFNSFAAS 61 Query: 130 PSS--AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 S + T + LF AV E A NP V+ PK + + +T ++++ + Sbjct: 62 ASKSYVDKMGTLVNSLFAQAVENELCAKNPMRHVKIPKVQEQCRESFTFDELKLILRYAL 121 Query: 188 EGSQPRLAFEF--LLYSGLRCSDSCRAGVQHLQNNIFSI---------------KTQKT- 229 + R++ LL +GLR S+ L + ++ KT Sbjct: 122 GYTPLRVSVAVITLLLTGLRRSELLGLKWSDLTADTLTVNRSVYLESGKPKVEEHRAKTI 181 Query: 230 GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFS----IWFK--AKATKAGVN 283 ++ T+ L L P E F + + + FS +F+ +A Sbjct: 182 SSLRTIPLLPELSYKLHTLPKRSEFIFCSRNGTLWHPRNFSRDYTTFFRHLREAEPDARR 241 Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 S H R AT+S +GA + A G + YT Sbjct: 242 LSPHCCRHTFATLSLASGADIRTVQALLGHANIKTTSRYTH 282 >gi|45442956|ref|NP_994495.1| site-specific tyrosine recombinase XerC [Yersinia pestis biovar Microtus str. 91001] gi|108806177|ref|YP_650093.1| site-specific tyrosine recombinase XerC [Yersinia pestis Antiqua] gi|108810287|ref|YP_646054.1| site-specific tyrosine recombinase XerC [Yersinia pestis Nepal516] gi|145600710|ref|YP_001164786.1| site-specific tyrosine recombinase XerC [Yersinia pestis Pestoides F] gi|153948314|ref|YP_001399204.1| site-specific tyrosine recombinase XerC [Yersinia pseudotuberculosis IP 31758] gi|153997101|ref|ZP_02022234.1| putative integrase/recombinase [Yersinia pestis CA88-4125] gi|161484900|ref|NP_667725.2| site-specific tyrosine recombinase XerC [Yersinia pestis KIM 10] gi|162418493|ref|YP_001605136.1| site-specific tyrosine recombinase XerC [Yersinia pestis Angola] gi|165926246|ref|ZP_02222078.1| tyrosine recombinase XerC [Yersinia pestis biovar Orientalis str. F1991016] gi|165939104|ref|ZP_02227655.1| tyrosine recombinase XerC [Yersinia pestis biovar Orientalis str. IP275] gi|166011640|ref|ZP_02232538.1| tyrosine recombinase XerC [Yersinia pestis biovar Antiqua str. E1979001] gi|166213553|ref|ZP_02239588.1| tyrosine recombinase XerC [Yersinia pestis biovar Antiqua str. B42003004] gi|167401874|ref|ZP_02307362.1| tyrosine recombinase XerC [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167420989|ref|ZP_02312742.1| tyrosine recombinase XerC [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167426292|ref|ZP_02318045.1| tyrosine recombinase XerC [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167468815|ref|ZP_02333519.1| site-specific tyrosine recombinase XerC [Yersinia pestis FV-1] gi|170026220|ref|YP_001722725.1| site-specific tyrosine recombinase XerC [Yersinia pseudotuberculosis YPIII] gi|218930846|ref|YP_002348721.1| site-specific tyrosine recombinase XerC [Yersinia pestis CO92] gi|229837173|ref|ZP_04457338.1| site-specific tyrosine recombinase [Yersinia pestis Pestoides A] gi|229839533|ref|ZP_04459692.1| site-specific tyrosine recombinase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229900096|ref|ZP_04515233.1| site-specific tyrosine recombinase [Yersinia pestis biovar Orientalis str. India 195] gi|229900458|ref|ZP_04515587.1| site-specific tyrosine recombinase [Yersinia pestis Nepal516] gi|270488812|ref|ZP_06205886.1| tyrosine recombinase XerC [Yersinia pestis KIM D27] gi|294505507|ref|YP_003569569.1| tyrosine recombinase [Yersinia pestis Z176003] gi|34222851|sp|Q8D1K0|XERC_YERPE RecName: Full=Tyrosine recombinase xerC gi|45437823|gb|AAS63372.1| putative integrase/recombinase [Yersinia pestis biovar Microtus str. 91001] gi|108773935|gb|ABG16454.1| tyrosine recombinase XerC subunit [Yersinia pestis Nepal516] gi|108778090|gb|ABG12148.1| tyrosine recombinase XerC subunit [Yersinia pestis Antiqua] gi|115349457|emb|CAL22430.1| putative integrase/recombinase [Yersinia pestis CO92] gi|145212406|gb|ABP41813.1| tyrosine recombinase XerC subunit [Yersinia pestis Pestoides F] gi|149289407|gb|EDM39485.1| putative integrase/recombinase [Yersinia pestis CA88-4125] gi|152959809|gb|ABS47270.1| tyrosine recombinase XerC [Yersinia pseudotuberculosis IP 31758] gi|162351308|gb|ABX85256.1| tyrosine recombinase XerC [Yersinia pestis Angola] gi|165912877|gb|EDR31503.1| tyrosine recombinase XerC [Yersinia pestis biovar Orientalis str. IP275] gi|165921770|gb|EDR38967.1| tyrosine recombinase XerC [Yersinia pestis biovar Orientalis str. F1991016] gi|165989409|gb|EDR41710.1| tyrosine recombinase XerC [Yersinia pestis biovar Antiqua str. E1979001] gi|166205226|gb|EDR49706.1| tyrosine recombinase XerC [Yersinia pestis biovar Antiqua str. B42003004] gi|166961118|gb|EDR57139.1| tyrosine recombinase XerC [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167048767|gb|EDR60175.1| tyrosine recombinase XerC [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167054811|gb|EDR64615.1| tyrosine recombinase XerC [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169752754|gb|ACA70272.1| tyrosine recombinase XerC [Yersinia pseudotuberculosis YPIII] gi|229682477|gb|EEO78564.1| site-specific tyrosine recombinase [Yersinia pestis Nepal516] gi|229686876|gb|EEO78955.1| site-specific tyrosine recombinase [Yersinia pestis biovar Orientalis str. India 195] gi|229695899|gb|EEO85946.1| site-specific tyrosine recombinase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229706116|gb|EEO92125.1| site-specific tyrosine recombinase [Yersinia pestis Pestoides A] gi|262363573|gb|ACY60294.1| tyrosine recombinase [Yersinia pestis D106004] gi|262367501|gb|ACY64058.1| tyrosine recombinase [Yersinia pestis D182038] gi|270337316|gb|EFA48093.1| tyrosine recombinase XerC [Yersinia pestis KIM D27] gi|294355966|gb|ADE66307.1| tyrosine recombinase [Yersinia pestis Z176003] gi|320013559|gb|ADV97130.1| site-specific tyrosine recombinase [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 303 Score = 123 bits (308), Expect = 5e-26, Method: Composition-based stats. Identities = 44/259 (16%), Positives = 87/259 (33%), Gaps = 19/259 (7%) Query: 85 GSLAVNSRISFES---YFDQIIRKSGDFDYRKITTKHIRSGVESRKH---TPSSAIQFLT 138 L+ + S+ +I + G ++ + +RS V K SS L+ Sbjct: 23 RQLSPLTVTSYRRQLSALMEIGEQMGLAHWQTLDAAQVRSLVSRSKRAGLHASSLALRLS 82 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQPRLA 195 ++R W V Q + NP V P+ + +++ + S + R Sbjct: 83 ALRSFLNWLVSQGVLPANPAKGVSTPRSGRHLPKNIDVDEVNKLLSIDLNDPLAVRDRAM 142 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI--------ITVELPDGFMKLLAM 247 E + +GLR S+ +H+ + G+ V ++ L + Sbjct: 143 LEVMYGAGLRLSELVGMNCKHVDLASGDVWVMGKGSKERKVPLGKTAVTWLQHWLALREL 202 Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAH 305 + F+ N ++++A F K GV + H +R AT ++ Sbjct: 203 FEPQDDAIFLANTGKRISARNVQKRFAEWGVKQGVSSHIHPHKLRHSFATHMLESSGDLR 262 Query: 306 ELMATYGWKTVDQAETYTK 324 + G + + YT Sbjct: 263 AVQELLGHANLTTTQIYTH 281 >gi|314933431|ref|ZP_07840796.1| tyrosine recombinase XerC [Staphylococcus caprae C87] gi|313653581|gb|EFS17338.1| tyrosine recombinase XerC [Staphylococcus caprae C87] Length = 296 Score = 123 bits (308), Expect = 5e-26, Method: Composition-based stats. Identities = 39/265 (14%), Positives = 95/265 (35%), Gaps = 20/265 (7%) Query: 85 GSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIR---SGVESRKHTPSSAIQFLTS 139 + + + S+ Q S D K R + + S ++ + +++ Sbjct: 16 RNFSEYTLKSYHDDLIQFNDFLVSEHLDLATFEYKDARNYLAFLYSHNLKRTTVSRKIST 75 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF----KSFWSEGSQPRLA 195 +R +++ + Q+ + +NP + + PK++ + + +E+M+ + +G + R+ Sbjct: 76 LRTFYEYWMTQDELIVNPFVQLVHPKKEQYLPQFFYEEEMEALFQTVEQDNKKGMRDRVI 135 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE--------LPDGFMKLLA 246 E L +G+R S+ ++ + N+ +K K + + + Sbjct: 136 IELLYATGIRVSELINIKIKDIDMNLPGVKVLGKGNKERFIPFGEFCKQSIERYLDEFQP 195 Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATK-AGV-NKSAHGVRKFSATISADAGATA 304 E +N + + AGV + H +R AT + GA Sbjct: 196 RKSSDHEYLIVNMSGAPITERGVRYVLNDVVKRTAGVTDIHPHKLRHTFATHLLNQGADL 255 Query: 305 HELMATYGWKTVDQAETYTKGADRI 329 + + G + YT +++ Sbjct: 256 RTVQSLLGHVNLSTTGRYTHVSNQQ 280 >gi|229031461|ref|ZP_04187461.1| Tyrosine recombinase xerC [Bacillus cereus AH1271] gi|228729750|gb|EEL80730.1| Tyrosine recombinase xerC [Bacillus cereus AH1271] Length = 299 Score = 123 bits (308), Expect = 5e-26, Method: Composition-based stats. Identities = 43/272 (15%), Positives = 96/272 (35%), Gaps = 26/272 (9%) Query: 85 GSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIRSGV---ESRKHTPSSAIQFLT 138 + + + S+++ + + + G + +T +R + K S + ++ Sbjct: 18 RNYSKYTIASYQNDLEHFVQFMEREGISSFLDVTYADVRLYLTTLHDEKLARKSVARKVS 77 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRL 194 S+R L+++ +R+ Y NP PK++ + E++++ G + + Sbjct: 78 SLRSLYRFLMREGYRKDNPFALASLPKKELSIPKFLYAEELEELFEVSDTETPLGQRNQA 137 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE------------LPDGF 241 E + +G+R S+ + + + +I K + + +G Sbjct: 138 LLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQRYIPFGSYAQDALITYIENGR 197 Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299 +L T F+N + + KA + S H +R AT D Sbjct: 198 KQLAHKTEEHSHMVFLNAKGTPLTSRGVRYVLNELIKKASLTMRISPHMLRHTFATHMLD 257 Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRL 331 GA + G + + + YT + RL Sbjct: 258 EGADLRTVQELLGHENLSTTQIYTH-VSKERL 288 >gi|91205817|ref|YP_538172.1| site-specific tyrosine recombinase XerD [Rickettsia bellii RML369-C] gi|123084556|sp|Q1RHT1|XERD_RICBR RecName: Full=Tyrosine recombinase xerD gi|91069361|gb|ABE05083.1| Tyrosine recombinase XerD [Rickettsia bellii RML369-C] Length = 305 Score = 122 bits (307), Expect = 6e-26, Method: Composition-based stats. Identities = 49/286 (17%), Positives = 106/286 (37%), Gaps = 38/286 (13%) Query: 75 ISEYRKSA-HWGSLAVNSRISFESYFDQI-----IRKSGDFDYRKITTKHIRSGVESRKH 128 IS++ + +L+ NS +S++ +K + + ++ + Sbjct: 4 ISQFLEMLLAERALSKNSILSYKRDLLDFHNYLAKQKLSELNITTDNIRNWVEYLAENSL 63 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-- 186 S + +++++ +++ + + + +NP L+++ PK + + + +D++ + Sbjct: 64 QARSINRKISTIKSYYEFLISENHTNLNPLLNIDLPKYQNKLPEILSIDDIKSLLEYCSQ 123 Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK--------TGTIITV 235 EG++ L SGLR S+ + + +N S + +K I V Sbjct: 124 DISPEGARLNAMIHLLYASGLRVSELVSLKLSDILSNKVSREVKKIFSVLGKGNKERIIV 183 Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQK--------------MNATQFSIWFKAKATKAG 281 L+ + F+N K K M F+I K+ A AG Sbjct: 184 INEPAINSLVKYLVVRDN--FVNKTKPKNLIYLFPSSAAAGYMTRQNFAILLKSAALYAG 241 Query: 282 VN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 +N S H +R A+ + GA + G + + YT Sbjct: 242 LNPEHISPHVLRHSFASHLLEGGADLRVIQELLGHADISTTQIYTH 287 >gi|28198670|ref|NP_778984.1| phage-related integrase [Xylella fastidiosa Temecula1] gi|182681361|ref|YP_001829521.1| integrase family protein [Xylella fastidiosa M23] gi|28056761|gb|AAO28633.1| phage-related integrase [Xylella fastidiosa Temecula1] gi|182631471|gb|ACB92247.1| integrase family protein [Xylella fastidiosa M23] gi|307579807|gb|ADN63776.1| integrase family protein [Xylella fastidiosa subsp. fastidiosa GB514] Length = 339 Score = 122 bits (307), Expect = 6e-26, Method: Composition-based stats. Identities = 61/333 (18%), Positives = 113/333 (33%), Gaps = 28/333 (8%) Query: 7 LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66 +P F + + + G + YY+ G R P Y A+ + E+ Sbjct: 11 IPRFRVRPQ-KSGVVYYYYDHGGKPRKETPLG------RDYGLAI-KRWAELEHAQITPA 62 Query: 67 KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVE 124 T + + YR + A N++ +++ D + I +IR ++ Sbjct: 63 IAVTFRHVAERYRAEVT-PTKAYNTQRVEHRCLAPLLKFFDDPPAPFEAIKPVNIRQYLD 121 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVA-INPCLSVERPKRKTEGIRPWTKEDMQQFK 183 R A + ++ L+ WA + NPC + R K + D ++ Sbjct: 122 WRTSKV-IANREVSVFSHLWNWARSKGITDLPNPCGGIRRNKATGRDVYV----DDTTYR 176 Query: 184 SFWSEGSQP-RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242 + + Q R A + +G R SD +H+ N I KTG + + + Sbjct: 177 AVYQAADQTLRDAMDLAYLTGQRVSDVVSMDERHIVNGALEICQAKTGVKLAIAITGELA 236 Query: 243 KLLAMTPIGKE-------TFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKF 292 L+ K ++ +N + + F+ AG+ K +R Sbjct: 237 VLIKRIFDRKRGMKLRSTRLIVDEKGLGLNWKKLAYRFRKVRAAAGIAKEVFQFRDLRAK 296 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKG 325 +AT AD + A G +V E Y + Sbjct: 297 AATDKADLAGDIRQAQAQLGHASVTMTEHYVRK 329 >gi|330827985|ref|YP_004390937.1| Tyrosine recombinase XerC [Aeromonas veronii B565] gi|328803121|gb|AEB48320.1| Tyrosine recombinase XerC [Aeromonas veronii B565] Length = 325 Score = 122 bits (307), Expect = 6e-26, Method: Composition-based stats. Identities = 51/297 (17%), Positives = 106/297 (35%), Gaps = 25/297 (8%) Query: 53 GSTPKREYINSPRKKPTTLKWLISEYRKSAHW----GSLAVNSRISFESYFDQIIRKS-- 106 TP + +P P L E + L+ ++R +++++ + + + Sbjct: 2 ARTPAKAPAKAPVIAPPLPAALADELAAFIEYLRVERQLSPHTRNNYQAHLEAMTAELVA 61 Query: 107 -GDFDYRKITTKHIRSGVESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE 162 G D+ ++ +R+ V P S ++++R W VRQ + NP + Sbjct: 62 LGLTDWGRLEASQVRTLVTRMHKAGLAPRSLSTKVSALRSFCDWQVRQGRLTANPARGIV 121 Query: 163 RPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ 218 PK+ + ++M Q + + R E + SGLR ++ + L+ Sbjct: 122 TPKQGRPLPKNLDVDEMHQLLNITDEQDPLAVRDRAIMELMYSSGLRLAELVGINLVDLK 181 Query: 219 -NNIFSIKTQKTGTIITVELP----DGFMKLLAMTP----IGKETFFINNDKQKMNATQF 269 ++ T K + + + K L + P E F+++ KQ+++A Sbjct: 182 LDDRQLKVTGKGSRERVLPIGRMAVEWLQKWLKVRPLLAGDESEALFVSSRKQRLSARSV 241 Query: 270 SIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 K +N H +R AT ++ + G + + YT Sbjct: 242 QARLDGWGNKQALNAHVHPHKLRHSFATHMLESSGDLRAVQELLGHADLSTTQIYTH 298 >gi|189439098|ref|YP_001954179.1| Integrase [Bifidobacterium longum DJO10A] gi|189427533|gb|ACD97681.1| Integrase [Bifidobacterium longum DJO10A] Length = 308 Score = 122 bits (307), Expect = 6e-26, Method: Composition-based stats. Identities = 43/271 (15%), Positives = 91/271 (33%), Gaps = 31/271 (11%) Query: 85 GSLAVNSRISFE----SYFDQIIRKSGDFD--YRKITTKHIRSGVESRKHTPSSAIQFLT 138 LA + ++E Y D + + K + + ++ + S + L Sbjct: 20 RGLATATVTAYESDIAKYIDWLETRGIHEPDAITKQDVEDYIAALDQAGESARSKARRLA 79 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG-------SQ 191 S+ ++A+ Q V + +V+ PK + T +++ + + G + Sbjct: 80 SIHEFHRFALGQHAVTADVSAAVKAPKGASTLPDVLTVDEVTRLLDAAAVGGSTDPVVLR 139 Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPD----------- 239 + EF+ +G R S++ A + + + + K V L Sbjct: 140 DKALLEFMYATGCRVSEATGANLDDIDLDEHIARLMGKGSKQRLVPLGSYACRAITAYLN 199 Query: 240 ----GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFS 293 + + + F+N ++++ KA +AG+ K H +R Sbjct: 200 AGRGELEQRSSAKIPERRALFLNKRGKRISRQSVWEIVKATGERAGITKPLHPHTLRHSF 259 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTK 324 AT GA + G +V + YT Sbjct: 260 ATHLIQGGADVRTVQELLGHASVTTTQIYTH 290 >gi|222035509|emb|CAP78254.1| Tyrosine recombinase xerC [Escherichia coli LF82] gi|312948364|gb|ADR29191.1| site-specific tyrosine recombinase XerC [Escherichia coli O83:H1 str. NRG 857C] gi|324007468|gb|EGB76687.1| tyrosine recombinase XerC [Escherichia coli MS 57-2] Length = 298 Score = 122 bits (307), Expect = 6e-26, Method: Composition-based stats. Identities = 42/270 (15%), Positives = 91/270 (33%), Gaps = 20/270 (7%) Query: 75 ISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITT------KHIRSGVESRK 127 + Y + L+ + ++++ + II + + + ++ + Sbjct: 8 VERYLRYLSVERQLSPITLLNYQRQLEAIIHFASENGLQSWQQCDVTMVRNFAVRSRRKG 67 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186 +S L+++R F W V Q + NP V PK + +DM + Sbjct: 68 LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDIDI 127 Query: 187 --SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT--------VE 236 + R E + +GLR S+ ++HL + G+ V Sbjct: 128 NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAVA 187 Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSA 294 + ++ L + + F++ ++++A F K G+N H +R A Sbjct: 188 WIEHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRHSFA 247 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTK 324 T ++ + G + + YT Sbjct: 248 THMLESSGDLRGVQELLGHANLSTTQIYTH 277 >gi|23465930|ref|NP_696533.1| integrase/recombinase [Bifidobacterium longum NCC2705] gi|34222807|sp|Q7ZAP1|XERD_BIFLO RecName: Full=Tyrosine recombinase xerD gi|23326639|gb|AAN25169.1| probable integrase/recombinase [Bifidobacterium longum NCC2705] Length = 308 Score = 122 bits (307), Expect = 6e-26, Method: Composition-based stats. Identities = 43/271 (15%), Positives = 91/271 (33%), Gaps = 31/271 (11%) Query: 85 GSLAVNSRISFE----SYFDQIIRKSGDFD--YRKITTKHIRSGVESRKHTPSSAIQFLT 138 LA + ++E Y D + + K + + ++ + S + L Sbjct: 20 RGLATATVTAYESDIAKYIDWLETRGIHEPDAITKQDVEDYIAALDQAGESARSKARRLA 79 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG-------SQ 191 S+ ++A+ Q V + +V+ PK + T +++ + + G + Sbjct: 80 SIHEFHRFALGQHAVTADVSAAVKAPKGASTLPDVLTVDEVTRLLDAAAVGGSTDPVVLR 139 Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPD----------- 239 + EF+ +G R S++ A + + + + K V L Sbjct: 140 DKALLEFMYATGCRVSEATGANLDDIDLDEHIARLMGKGSKQRLVPLGSYACRAITAYLN 199 Query: 240 ----GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFS 293 + + + F+N ++++ KA +AG+ K H +R Sbjct: 200 AGRGELEQRSSAKIPERRALFLNKRGKRISRQSVWEIVKATGERAGITKPLHPHTLRHSF 259 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTK 324 AT GA + G +V + YT Sbjct: 260 ATHLIQGGADVRTVQELLGHASVTTTQIYTH 290 >gi|77918237|ref|YP_356052.1| site-specific recombinase [Pelobacter carbinolicus DSM 2380] gi|77544320|gb|ABA87882.1| site-specific recombinase [Pelobacter carbinolicus DSM 2380] Length = 332 Score = 122 bits (307), Expect = 6e-26, Method: Composition-based stats. Identities = 47/281 (16%), Positives = 104/281 (37%), Gaps = 29/281 (10%) Query: 72 KWLISEYRKSAH-WGSLAVNSRISFESYFDQIIR----KSGDF----------DYRKITT 116 LI+ + + +L+ ++ ++ + R ++G+ + Sbjct: 32 DRLIARFCRHLEVERNLSPHTLRAYRQDLTEFSRFLKQEAGEEGSSNTASAIEQVDALVL 91 Query: 117 KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176 + + + R ++ + L+++R F++ VRQ +A++P +V PKR+ + T Sbjct: 92 RRYLARLHKRNRK-TTIGRKLSAVRSFFRYLVRQGELAVSPAETVATPKREQYLPKVLTV 150 Query: 177 EDMQQFKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-T 231 +++ + R E SGLR + V H+ ++ + G Sbjct: 151 DEVFALIKAADGDEPLTVRDRAILELFYSSGLRVGELEGLDVGHVDLRDGLVRVRGKGDK 210 Query: 232 IITVELPDGFMKLL------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--N 283 V + + L P ++ F+N ++++ K AG+ + Sbjct: 211 ERIVPMGRPARQALGRYLAERGVPDREQPLFLNYRGGRLSSRSIERNLKKWLLCAGILKD 270 Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 S H +R AT D GA + G ++ + YT+ Sbjct: 271 ASPHALRHTFATHLLDGGADLRAIQELLGHASLSTTQKYTQ 311 >gi|331665461|ref|ZP_08366360.1| tyrosine recombinase XerC [Escherichia coli TA143] gi|331057359|gb|EGI29348.1| tyrosine recombinase XerC [Escherichia coli TA143] Length = 298 Score = 122 bits (307), Expect = 6e-26, Method: Composition-based stats. Identities = 42/270 (15%), Positives = 91/270 (33%), Gaps = 20/270 (7%) Query: 75 ISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITT------KHIRSGVESRK 127 + Y + L+ + ++++ + II + + + ++ + Sbjct: 8 VERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRKG 67 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186 +S L+++R F W V Q + NP V PK + +DM + Sbjct: 68 LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSVPKAPRHLPKNIDVDDMNRLLDIDI 127 Query: 187 --SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT--------VE 236 + R E + +GLR S+ ++HL + G+ V Sbjct: 128 NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAVA 187 Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSA 294 + ++ L + + F++ ++++A F K G+N H +R A Sbjct: 188 WIEHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRHSFA 247 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTK 324 T ++ + G + + YT Sbjct: 248 THMLESSGDLRGVQELLGHANLSTTQIYTH 277 >gi|288959398|ref|YP_003449739.1| phage integrase family protein [Azospirillum sp. B510] gi|288911706|dbj|BAI73195.1| phage integrase family protein [Azospirillum sp. B510] Length = 345 Score = 122 bits (307), Expect = 6e-26, Method: Composition-based stats. Identities = 54/281 (19%), Positives = 96/281 (34%), Gaps = 23/281 (8%) Query: 63 SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG 122 +P ++ +I Y+ SA + + A +R + I SGD + ++ + ++ Sbjct: 31 PDEVRPGSVAHIIRLYKASARFTTKAEKTRYEYGQLLKVIEAWSGDAPVKALSRETVQDY 90 Query: 123 VESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 +S T + A L +R+L K+A +V N R W+ E++ Sbjct: 91 YQSLWDTGKKAKANAVLRVLRILLKFAWDNGHVTHNAAEKPGMVSIAPRL-RIWSDEEID 149 Query: 181 QFKSFWSEGSQPRLAFEFLL--YSGLRCSDSCRAGVQHLQ----NNIFSIKTQKTGTIIT 234 +F + P +A + Y G R D +Q +K K G + Sbjct: 150 RFVAAADAAGWPCIADAVVYGVYLGQRQGDLLALRQLAVQPDGTGYSIHLKQAKRGARVA 209 Query: 235 VELPDGFMKLLAMTPIGK--------ETFFINNDKQKMNATQFSIWFKA-KATKAGVNKS 285 + L + + ++ K +A F F +AT A S Sbjct: 210 IPLHPRAAARQRAALARRTEGGVKAVTALWNDSTKAPWSADTFRHQFSEIRATVAKELPS 269 Query: 286 AHGV-----RKFSATISADAGATAHELMATYGWKTVDQAET 321 V R + T A+AG T E+ A G + Sbjct: 270 IADVWFMDTRDTAVTKLAEAGCTVPEICAITGHDEPSAYQI 310 >gi|296840755|ref|ZP_06863381.2| tyrosine recombinase XerC [Neisseria polysaccharea ATCC 43768] gi|296840030|gb|EFH23968.1| tyrosine recombinase XerC [Neisseria polysaccharea ATCC 43768] Length = 334 Score = 122 bits (307), Expect = 6e-26, Method: Composition-based stats. Identities = 37/281 (13%), Positives = 91/281 (32%), Gaps = 24/281 (8%) Query: 68 PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD-------YRKITTKHIR 120 P Y ++ + ++ ++ +++ + ++ + Sbjct: 32 PDGFAAHFDAYLENIVREGKSEHTVAAYRRDLEELFALLAQMPSEAEGGVPQDLSRRDFT 91 Query: 121 SGVES---RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177 + + R + + L+S R W V++ + +P ++ PK+ + ++E Sbjct: 92 AALRRLSQRGLNARTLARKLSSWRQYCAWLVKRGLLHTDPTADIKPPKQPERVPKALSQE 151 Query: 178 DMQQFKSF-----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-T 231 + + + FE + SGLR S+ V + + + G Sbjct: 152 WLNRMLDLPVDGGDPLAVRDHALFELMYGSGLRVSEIHGLNVDDVYLDEAWVHVTGKGRK 211 Query: 232 IITVELP----DGFMKL--LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK--AGVN 283 V L + L T + F + +++ Q ++ A + G + Sbjct: 212 QRQVPLTGKSVEALKNYLPLRQTASDGKALFTGRNGTRLSQRQIQKRLESWAVQNGDGRH 271 Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 S H +R A+ + + G ++ + YTK Sbjct: 272 ISPHMMRHSYASHLLQSSRDIRAVQELLGHSSLSTTQIYTK 312 >gi|284923919|emb|CBG37018.1| tyrosine recombinase [Escherichia coli 042] gi|320176053|gb|EFW51122.1| Tyrosine recombinase XerC [Shigella dysenteriae CDC 74-1112] Length = 298 Score = 122 bits (307), Expect = 6e-26, Method: Composition-based stats. Identities = 45/272 (16%), Positives = 93/272 (34%), Gaps = 24/272 (8%) Query: 75 ISEYRKSAH-WGSLAVNSRISFESYFDQII--------RKSGDFDYRKITTKHIRSGVES 125 + Y + L+ + ++++ + II + D + + +RS Sbjct: 8 VERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRSFAVRSRR-- 65 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + +S L+++R F W V Q + NP V PK + +DM + Sbjct: 66 KGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDI 125 Query: 186 W---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT-------- 234 + R E + +GLR S+ ++HL + G+ Sbjct: 126 DINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNA 185 Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKF 292 V + ++ L + + F++ ++++A F K G+N H +R Sbjct: 186 VAWIEHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRHS 245 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTK 324 AT ++ + G + + YT Sbjct: 246 FATHMLESSGDLRGVQELLGHANLSTTQIYTH 277 >gi|157159369|ref|YP_001465295.1| site-specific tyrosine recombinase XerC [Escherichia coli E24377A] gi|218556374|ref|YP_002389288.1| site-specific tyrosine recombinase XerC [Escherichia coli IAI1] gi|300923315|ref|ZP_07139363.1| tyrosine recombinase XerC [Escherichia coli MS 182-1] gi|301328427|ref|ZP_07221508.1| tyrosine recombinase XerC [Escherichia coli MS 78-1] gi|166918883|sp|A7ZU16|XERC_ECO24 RecName: Full=Tyrosine recombinase xerC gi|254799337|sp|B7M613|XERC_ECO8A RecName: Full=Tyrosine recombinase xerC gi|157081399|gb|ABV21107.1| tyrosine recombinase XerC [Escherichia coli E24377A] gi|218363143|emb|CAR00784.1| site-specific tyrosine recombinase [Escherichia coli IAI1] gi|300420401|gb|EFK03712.1| tyrosine recombinase XerC [Escherichia coli MS 182-1] gi|300845137|gb|EFK72897.1| tyrosine recombinase XerC [Escherichia coli MS 78-1] Length = 298 Score = 122 bits (307), Expect = 6e-26, Method: Composition-based stats. Identities = 42/270 (15%), Positives = 91/270 (33%), Gaps = 20/270 (7%) Query: 75 ISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITT------KHIRSGVESRK 127 + Y + L+ + ++++ + II + + + ++ + Sbjct: 8 VERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTVVRNFAVRSRRKG 67 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186 +S L+++R F W V Q + NP V PK + +DM + Sbjct: 68 LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDIDI 127 Query: 187 --SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT--------VE 236 + R E + +GLR S+ ++HL + G+ V Sbjct: 128 NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAVA 187 Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSA 294 + ++ L + + F++ ++++A F K G+N H +R A Sbjct: 188 WIEHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRHSFA 247 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTK 324 T ++ + G + + YT Sbjct: 248 THMLESSGDLRGVQELLGHANLSTTQIYTH 277 >gi|323697647|ref|ZP_08109559.1| integrase family protein [Desulfovibrio sp. ND132] gi|323457579|gb|EGB13444.1| integrase family protein [Desulfovibrio desulfuricans ND132] Length = 316 Score = 122 bits (307), Expect = 6e-26, Method: Composition-based stats. Identities = 48/265 (18%), Positives = 100/265 (37%), Gaps = 26/265 (9%) Query: 85 GSLAVNSRISFESYFDQIIR-----KSGDFDYRKITTKHIR---SGVESRKHTPSSAIQF 136 + + S+ + +Q K+ ++ H+R + + R+ T +S + Sbjct: 26 KGYSPATIRSYGTDLEQFEEFLRGRKASLERPARLNRDHVRGFLAELHRRQMTKTSMGRK 85 Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQFKSFWSEGSQP 192 L+S+R FK+ +R + + +P + PK++ + + M+ EG + Sbjct: 86 LSSLRAYFKYLLRHKVITKDPVAGIRNPKQEKHHPQVLNVDQAVSLMEARVEPDPEGLRD 145 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGK 252 E L SGLR S++ + + +++ + T K V L D + + + Sbjct: 146 VALAEVLYGSGLRISEAIGLDLNDVDSDVIRV-TGKGSKERIVPLSDAAVARIRRYLGQR 204 Query: 253 ETF----------FINNDKQKMNATQFSIWFKAKA-TKAGVNKS--AHGVRKFSATISAD 299 F F+++ K + + A+ AG+ H +R AT + Sbjct: 205 HAFLKGNYAEQALFLSSRAGKRLDRRQANRIVARLGKLAGLPLDVHPHTLRHSFATHMLE 264 Query: 300 AGATAHELMATYGWKTVDQAETYTK 324 AGA + G + + + YT Sbjct: 265 AGADLRSVQELLGHENLTTTQRYTH 289 >gi|157964586|ref|YP_001499410.1| integrase [Rickettsia massiliae MTU5] gi|157844362|gb|ABV84863.1| Integrase [Rickettsia massiliae MTU5] Length = 386 Score = 122 bits (307), Expect = 6e-26, Method: Composition-based stats. Identities = 51/293 (17%), Positives = 103/293 (35%), Gaps = 14/293 (4%) Query: 45 PAYMSALTGSTPKREYINSPR---KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ 101 A S L G K + K T K L +Y + + + + D+ Sbjct: 77 RAKASELKGEIAKGYNPVEEKVRLAKELTFKELYDKYLN--EYSKINNKRWRDYAASIDR 134 Query: 102 IIRKSGDFDYRKITTKHIRSGVESR-KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160 + I I+ + K A +FL + +F A+ E + INP + Sbjct: 135 YAKHLYPRKISTIQKADIQELFNNLTKTGKYGANRFLEVLSPVFSKAIEWELLTINPVIG 194 Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWS--EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ 218 +++ K ++ R T+E++ +F + + E + F LY+ +R + + + Sbjct: 195 IKKHKEQSR-DRYLTREEIPRFFTAIAGEENQVMKDFFLIALYTSVRKDNILTMRWEQVS 253 Query: 219 --NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET--FFINNDKQKMNATQFSIWFK 274 + + K G + L D +++L + F + + + +K Sbjct: 254 FADKQLYLPDTKNGDPHRLPLLDQAVEILKARKEQSTSEWVFPSETSSSGHLQEPKKAWK 313 Query: 275 AKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 KAG+ N H +R+ + A GA + + + Y + A Sbjct: 314 RICKKAGIENLRIHDLRRTIPSWMAMTGANQYVIGQLLNHRDPRSTAVYARLA 366 >gi|194333561|ref|YP_002015421.1| tyrosine recombinase XerD [Prosthecochloris aestuarii DSM 271] gi|194311379|gb|ACF45774.1| tyrosine recombinase XerD [Prosthecochloris aestuarii DSM 271] Length = 304 Score = 122 bits (307), Expect = 6e-26, Method: Composition-based stats. Identities = 46/267 (17%), Positives = 94/267 (35%), Gaps = 29/267 (10%) Query: 85 GSLAVNSRISFESYFDQ--IIRKSGDFDYRKITTKHIRSGVESRKHT---PSSAIQFLTS 139 + +VN+R S+ + + + + I IR + + T S + +++ Sbjct: 23 RNFSVNTRQSYTNDLSRYLLYMQQQQKAVESIKLDDIREFIHTLSATGMEARSIARNISA 82 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQFKSFWSE---GSQP 192 +R L K+ V ++ V +N ++ +PK + T ++ + + S + Sbjct: 83 IRSLHKFLVAEKIVQVNETNNLRQPKPLKALPKVLTHDEAFKLLDAPLAKDSSSRYALRD 142 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQH--LQNNIFSIKTQKTGTIITVEL-----------PD 239 + EFL +G+R S+ + L I K V + D Sbjct: 143 KAILEFLYATGVRVSELVDVCQNNCFLDEGFIRI-FGKGSKERLVPIGSSAVSWIKRYLD 201 Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS 297 +A + F+N ++ + AG++K S H +R AT Sbjct: 202 ELRMRIAN-DRSADFLFLNARGGRLTRMTVYNIVTHYSLIAGISKTISPHTLRHTFATHL 260 Query: 298 ADAGATAHELMATYGWKTVDQAETYTK 324 + GA + G ++ + YT Sbjct: 261 LEGGADLRAVQEMLGHSSILATQIYTH 287 >gi|292493801|ref|YP_003529240.1| tyrosine recombinase XerC [Nitrosococcus halophilus Nc4] gi|291582396|gb|ADE16853.1| tyrosine recombinase XerC [Nitrosococcus halophilus Nc4] Length = 300 Score = 122 bits (307), Expect = 6e-26, Method: Composition-based stats. Identities = 36/274 (13%), Positives = 92/274 (33%), Gaps = 21/274 (7%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRS---GVE 124 + I + + L+ + +S+ ++ + G + ++ + +R+ Sbjct: 6 QAWIQRFLTHLQYERGLSGQTIVSYRRDLAKVATFCDRHGIQGWGELDAQKVRALVAAHH 65 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 + + S + L+++R + R+ V +P V PK K + + + Q Sbjct: 66 QKGLSGRSIQRLLSALRSFSTYLQREGVVENHPAQGVSAPKGKRQLPHALDVDQVAQLLK 125 Query: 185 FWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT-VELPDG 240 + + E SGLR ++ ++ L ++ G V L Sbjct: 126 GEPSDQLLLRDQAMLELFYSSGLRLAELVGLNLRELDLEAALVRVVGKGAKTREVPLGRQ 185 Query: 241 FMKLLAM--------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVR 290 L TP ++ F++ ++++ + + G++ + H +R Sbjct: 186 AKAALLAWLPVREAWTPRNQDAVFVSRQGRRLSPRGVQKRLRIWGLRQGLDVAIHPHRLR 245 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK 324 A+ ++ + G + + YT Sbjct: 246 HAFASHLLESSGDLRAVQELLGHADISTTQIYTH 279 >gi|319637821|ref|ZP_07992587.1| tyrosine recombinase xerD [Neisseria mucosa C102] gi|317400976|gb|EFV81631.1| tyrosine recombinase xerD [Neisseria mucosa C102] Length = 215 Score = 122 bits (307), Expect = 6e-26, Method: Composition-based stats. Identities = 34/201 (16%), Positives = 71/201 (35%), Gaps = 16/201 (7%) Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAFEF 198 ++ W A NP ++ PK + + T+ + + G + + E Sbjct: 1 MYGWLEETGQRADNPTRFLKAPKSERKLPTLITEAQIDALLAAPDVETPHGLRDKALLEV 60 Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT-VELPDGFMKLLAMTPIGKETF-- 255 + +GLR +++ + + + + SI+T G + V L + Sbjct: 61 MYATGLRVTEAVKLTLSDIDLHRGSIRTIGKGDKLRLVPLGQEAAYWVERYCNESRPLLL 120 Query: 256 --------FINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHE 306 F++ + ++ + K A AG+ S HG+R AT + G Sbjct: 121 KNKICDEVFVSQKRSGISRQLAWMIVKEYAEAAGIASLSPHGLRHAFATHLVNHGVDLRS 180 Query: 307 LMATYGWKTVDQAETYTKGAD 327 + G ++ + YT A+ Sbjct: 181 VQMMLGHSDINTTQIYTHVAN 201 >gi|117619677|ref|YP_855009.1| tyrosine recombinase XerC [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117561084|gb|ABK38032.1| tyrosine recombinase XerC [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 325 Score = 122 bits (307), Expect = 6e-26, Method: Composition-based stats. Identities = 44/261 (16%), Positives = 93/261 (35%), Gaps = 21/261 (8%) Query: 85 GSLAVNSRISFESYFDQIIR---KSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFLT 138 L+ ++R +++++ + + K G D+ ++ +RS V P S ++ Sbjct: 38 RQLSPHTRSNYQAHLEAMTAELVKLGVDDWARLEASQVRSLVTRMHKAGLAPRSLATKVS 97 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRL 194 ++R W VRQ + NP + PK+ + ++M Q + + R Sbjct: 98 ALRSFCDWQVRQGRLVANPARGIVTPKQGRPLPKNLDVDEMYQLLNITDEQDPLAVRDRA 157 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------ELPDGFMKLL 245 E + SGLR ++ + ++ + ++ G+ V L Sbjct: 158 IMELMYSSGLRLAELVGLNLADVKLDERQLRVTGKGSRERVLPVGRMAVEWLHKWLKLRP 217 Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGAT 303 + E F++ KQ+++A K +N H +R AT ++ Sbjct: 218 LLAGDELEALFVSKRKQRLSARSVQERLDGWGNKQALNAHVHPHKLRHSFATHMLESSGD 277 Query: 304 AHELMATYGWKTVDQAETYTK 324 + G + + YT Sbjct: 278 LRAVQELLGHADLSTTQIYTH 298 >gi|91213336|ref|YP_543322.1| site-specific tyrosine recombinase XerC [Escherichia coli UTI89] gi|117626070|ref|YP_859393.1| site-specific tyrosine recombinase XerC [Escherichia coli APEC O1] gi|218560875|ref|YP_002393788.1| site-specific tyrosine recombinase XerC [Escherichia coli S88] gi|237702820|ref|ZP_04533301.1| tyrosine recombinase xerC [Escherichia sp. 3_2_53FAA] gi|331649636|ref|ZP_08350718.1| tyrosine recombinase XerC [Escherichia coli M605] gi|123084331|sp|Q1R4C3|XERC_ECOUT RecName: Full=Tyrosine recombinase xerC gi|166918885|sp|A1AHX9|XERC_ECOK1 RecName: Full=Tyrosine recombinase xerC gi|254799332|sp|B7MH75|XERC_ECO45 RecName: Full=Tyrosine recombinase xerC gi|91074910|gb|ABE09791.1| integrase/recombinase XerC [Escherichia coli UTI89] gi|115515194|gb|ABJ03269.1| site-specific tyrosine recombinase XerC [Escherichia coli APEC O1] gi|218367644|emb|CAR05429.1| site-specific tyrosine recombinase [Escherichia coli S88] gi|226902991|gb|EEH89250.1| tyrosine recombinase xerC [Escherichia sp. 3_2_53FAA] gi|281180860|dbj|BAI57190.1| recombinase [Escherichia coli SE15] gi|294489806|gb|ADE88562.1| tyrosine recombinase XerC [Escherichia coli IHE3034] gi|307628874|gb|ADN73178.1| site-specific tyrosine recombinase XerC [Escherichia coli UM146] gi|315284713|gb|EFU44158.1| tyrosine recombinase XerC [Escherichia coli MS 110-3] gi|323189763|gb|EFZ75042.1| tyrosine recombinase XerC [Escherichia coli RN587/1] gi|323949305|gb|EGB45195.1| tyrosine recombinase XerC [Escherichia coli H252] gi|323954018|gb|EGB49816.1| tyrosine recombinase XerC [Escherichia coli H263] gi|330908111|gb|EGH36630.1| tyrosine recombinase XerC [Escherichia coli AA86] gi|331041506|gb|EGI13654.1| tyrosine recombinase XerC [Escherichia coli M605] Length = 298 Score = 122 bits (307), Expect = 6e-26, Method: Composition-based stats. Identities = 42/270 (15%), Positives = 91/270 (33%), Gaps = 20/270 (7%) Query: 75 ISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITT------KHIRSGVESRK 127 + Y + L+ + ++++ + II + + + ++ + Sbjct: 8 VERYLRYLSVERQLSPITLLNYQRQLEAIIHFASENGLQSWQQCDVTMVRNFAVRSRRKG 67 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186 +S L+++R F W V Q + NP V PK + +DM + Sbjct: 68 LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDIDI 127 Query: 187 --SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT--------VE 236 + R E + +GLR S+ ++HL + G+ V Sbjct: 128 NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAVA 187 Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSA 294 + ++ L + + F++ ++++A F K G+N H +R A Sbjct: 188 WIEHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRHSFA 247 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTK 324 T ++ + G + + YT Sbjct: 248 THMLESSGDLRGVQELLGHANLSTTQIYTH 277 >gi|188581692|ref|YP_001925137.1| tyrosine recombinase XerD [Methylobacterium populi BJ001] gi|179345190|gb|ACB80602.1| tyrosine recombinase XerD [Methylobacterium populi BJ001] Length = 332 Score = 122 bits (307), Expect = 6e-26, Method: Composition-based stats. Identities = 46/273 (16%), Positives = 89/273 (32%), Gaps = 28/273 (10%) Query: 85 GSLAVNSRISFESYFDQIIRK-----SGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139 A N+ ++ D + + + + + +E R SSA + L+ Sbjct: 27 RGAAANTLAAYRRDLDDYLGYLAQQGIDPEEAQADQVRAYIASLEPRGLKASSAARRLSC 86 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW--------SEGSQ 191 +R ++ + Y +P V P+R + + ++ + + + ++ Sbjct: 87 IRGFHRFLYAEGYCETDPTAPVAAPRRAKGLPKILSVAEVDRLLATARDRVEAAGDDRTE 146 Query: 192 PRLA------FEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKL 244 R A E L +GLR S+ + + K G V L + + Sbjct: 147 ARSAARMLCLLELLYATGLRVSELVALPRSAASARERYLVVKGKGGRERLVPLTELAREA 206 Query: 245 LAM-----TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATI 296 + T G F +++ + F+ K A AG+ S H +R A+ Sbjct: 207 MRAHVAHLTADGAWLFPADSESGHLTRQAFARDLKVAAAAAGLRTDRVSPHVLRHAFASH 266 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRI 329 GA + G V + YT D Sbjct: 267 LLQNGADLRIVQELLGHADVSTTQIYTHVLDER 299 >gi|302343256|ref|YP_003807785.1| integrase family protein [Desulfarculus baarsii DSM 2075] gi|301639869|gb|ADK85191.1| integrase family protein [Desulfarculus baarsii DSM 2075] Length = 304 Score = 122 bits (307), Expect = 6e-26, Method: Composition-based stats. Identities = 43/270 (15%), Positives = 88/270 (32%), Gaps = 28/270 (10%) Query: 86 SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE---------SRKHTPSSAI-- 134 + + ++ + R +G+ + ++ + P SA Sbjct: 25 GRSPATIAAYRRDLALVARVAGELAPGIVCRAVTAGFLDQVFSDGAVTESERGPRSAASV 84 Query: 135 -QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS--- 190 + ++R F WAV V NP S+ + + T + ++ + Sbjct: 85 HRMKAAVRAFFAWAVEVGVVDDNPARSIRMHRLPRKLPVFLTTAEKKRLLKELKGRTDFS 144 Query: 191 --QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE---------LPD 239 + R E LL +G+R + + + + ++ + G + V+ L Sbjct: 145 ALRDRAMIEVLLGTGIRLGELAALDMDDIDLDAKHLRVRAKGNVPQVKFIKTDLRTLLRR 204 Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS 297 + E F++N ++ Q + KAG+ K + HG+R AT Sbjct: 205 YLAERRRHGRPEMEALFLSNRDGRLCQRQIANRLAHWLRKAGIEKELTPHGLRHTFATHL 264 Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGAD 327 A + G + V + YT D Sbjct: 265 YSATNDLLVVQRALGHRDVSTTQVYTHLVD 294 >gi|206901908|ref|YP_002251233.1| recombinase [Dictyoglomus thermophilum H-6-12] gi|206741011|gb|ACI20069.1| recombinase [Dictyoglomus thermophilum H-6-12] Length = 301 Score = 122 bits (307), Expect = 6e-26, Method: Composition-based stats. Identities = 42/268 (15%), Positives = 96/268 (35%), Gaps = 18/268 (6%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133 I Y + + + N+ S+ + + D +++RS ++ Sbjct: 9 IENYINYLRFERNYSPNTLRSYSRDLMDFYKYCKEKDLDFTNKRNVRSYIQFIAQKNYKN 68 Query: 134 IQFLT---SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS--- 187 F+ S+R F++ + E + + + + PK + + + + +++ + + S Sbjct: 69 STFVRKVISLRSFFEYLLTFEKINEDLTVFIPTPKAEKKLPQFLSVDEVMKLLNSPSLDD 128 Query: 188 -EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLL 245 G + R E L +G+R S+ + + N I+ K V + + +K+L Sbjct: 129 LIGIRDRAIIETLYATGIRVSELVGMNEEDINWNYGEIRVFGKRAKERIVIVGEETLKIL 188 Query: 246 ---------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATI 296 + ++ FF+N +++ + K S H +R AT Sbjct: 189 QLYKDHVRPKLLKKPEKAFFLNAKGGRISDRAIRMIIKKYTKDFNKKVSPHTLRHTFATH 248 Query: 297 SADAGATAHELMATYGWKTVDQAETYTK 324 + GA + G + + YT Sbjct: 249 LLEGGADLRYVQELLGHVRISTTQIYTH 276 >gi|297618132|ref|YP_003703291.1| integrase family protein [Syntrophothermus lipocalidus DSM 12680] gi|297145969|gb|ADI02726.1| integrase family protein [Syntrophothermus lipocalidus DSM 12680] Length = 349 Score = 122 bits (307), Expect = 6e-26, Method: Composition-based stats. Identities = 45/279 (16%), Positives = 88/279 (31%), Gaps = 22/279 (7%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH 128 T++ ++ ++ G +S+ + + I G+ + + H+++ + Sbjct: 53 TVQEWAEKWWRTVKEGKTGNSSQEGYLLAMNKYIFPALGNMKLKDVRPIHVQNLINQMGE 112 Query: 129 TPSSA---IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 S Q L ++ +FK+AVR ++ NP E + + T + + Sbjct: 113 QGKSKSLQRQVLVALNGMFKYAVRNGLISGNPAQYTEYYEVPANERQALTPAQVAELLQA 172 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK----------------T 229 G++ LA LY GLR + L N +I +K Sbjct: 173 CK-GTRAELATHLALYCGLRRGEMVALKWSDLDENTRTIHVKKAVEFVNNQPKEKSPKSK 231 Query: 230 GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGV 289 + +P +L P ++ +M T + K + H + Sbjct: 232 AEERIIPIPPHLWDMLQSQPKKSMFVIPSDQGTQMTKTAVRRLLEPVQKKVSFYFTWHML 291 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGAD 327 R AT G G + + YT D Sbjct: 292 RHTYATALDKLGIPPKTCQYLLGHADISTTKNIYTHIQD 330 >gi|256827139|ref|YP_003151098.1| site-specific recombinase XerD [Cryptobacterium curtum DSM 15641] gi|256583282|gb|ACU94416.1| site-specific recombinase XerD [Cryptobacterium curtum DSM 15641] Length = 315 Score = 122 bits (307), Expect = 6e-26, Method: Composition-based stats. Identities = 43/284 (15%), Positives = 89/284 (31%), Gaps = 33/284 (11%) Query: 74 LISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH-----IRSGVESRK 127 L++ Y + G + ++ ++ + +R + + + H +++ + Sbjct: 15 LVARYLEELTSTGRASAHTIRNYGNDLADWLRFAERSNINALEPSHRDIRLYLVDLDAAR 74 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-- 185 + ++ + L+S+R F+W NP +V K DM + Sbjct: 75 YAKATINRRLSSLRGFFRWGQIAGLFEHNPAEAVSSLKEGKHLPHRIPPSDMVRILRVNG 134 Query: 186 -----------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT 234 + + EFL G R S++ V + + + + G+ Sbjct: 135 PRDEQGKTRLQTPIQMRDQAVLEFLYACGARISEAAALTVDAVDLDRGTARLFGKGSKER 194 Query: 235 VELPDGF------------MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282 V L FF++ MN FK +AGV Sbjct: 195 VVYLHALAIESMGAYLHFARNDLLRGRTDPGYFFLSTRGLPMNTDAIRKMFKTTLIQAGV 254 Query: 283 N--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 + H +R A+ + GA + G ++ + YT Sbjct: 255 RAAYTPHDMRHTFASDLLEGGADLRSVQELLGHSSLSTTQIYTH 298 >gi|228939736|ref|ZP_04102317.1| DNA integration/recombination/invertion protein [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228972599|ref|ZP_04133203.1| DNA integration/recombination/invertion protein [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228979206|ref|ZP_04139549.1| DNA integration/recombination/invertion protein [Bacillus thuringiensis Bt407] gi|228780563|gb|EEM28787.1| DNA integration/recombination/invertion protein [Bacillus thuringiensis Bt407] gi|228787140|gb|EEM35115.1| DNA integration/recombination/invertion protein [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228819968|gb|EEM66012.1| DNA integration/recombination/invertion protein [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326940330|gb|AEA16226.1| DNA integration/recombination/inversion protein [Bacillus thuringiensis serovar chinensis CT-43] Length = 369 Score = 122 bits (307), Expect = 7e-26, Method: Composition-based stats. Identities = 47/312 (15%), Positives = 108/312 (34%), Gaps = 38/312 (12%) Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVE 124 TLK ++ + + S+ ++ +++ + +I G K+ HI+ + Sbjct: 60 PSKVTLKDYLNHWLEIKS-MSIEKSTFAVYKAVINQHVIPSIGMVALHKLNVIHIQKCYK 118 Query: 125 SRKHTPSSAIQFLTSMRVL---FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 + + L R+L AV+Q ++ NP E PK++ I+ WT+E++++ Sbjct: 119 TAIDKGIANNSILLMHRILKSALNLAVKQNIISRNPAEFAEIPKKEKTPIQTWTEEEVKK 178 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--------------NNIFSIKTQ 227 F + S+ S+ + + + +G+R + Q + +N + Sbjct: 179 FLA-HSQESRYHIGYLLAITTGMRLGEVLGLRWQDIDFEKHTVTINQTSGHDNKIKKTAK 237 Query: 228 KTGTIITVELPDGFMKLLAMTPI--------------GKETFFINNDKQKMNATQFSIWF 273 + T+ +P+ + L I ++ N + + F F Sbjct: 238 TNSSKRTIPVPNETIAALKKHKILINKEKLRFGSAYLDQDLINCNEFGRIIKRAHFRKSF 297 Query: 274 KAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRL 331 K G+ + H +R AT+ G + G + Y+ + Sbjct: 298 IRMTHKVGIKEIKFHDLRHTHATLLLKQGVNPKIISERLGHTDISMTLSVYSHVL--PNM 355 Query: 332 GIKNSRRISSVV 343 + + + Sbjct: 356 QEEAVKNFGKSI 367 >gi|192291401|ref|YP_001992006.1| integrase family protein [Rhodopseudomonas palustris TIE-1] gi|192285150|gb|ACF01531.1| integrase family protein [Rhodopseudomonas palustris TIE-1] Length = 351 Score = 122 bits (307), Expect = 7e-26, Method: Composition-based stats. Identities = 61/336 (18%), Positives = 105/336 (31%), Gaps = 28/336 (8%) Query: 20 KIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYR 79 ++ Y R ES + +Y A R+ TL LI + Sbjct: 27 RVYLYHRATGEPL------DESRLVESYAEA---------EKKKRRRGGKTLTDLIRFFD 71 Query: 80 KSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---------KHTP 130 S + SL+ R + F +I +K G + + K + Sbjct: 72 TSETFASLSAEHRKQYVWKFARIEKKWGTVPEDTFNNQDDADAFAADALAWHQEIGKTSR 131 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 SA ++++ +A + + +P S ER + + W E Q+F S Sbjct: 132 RSADNLMSALCRALSFAKEKRRIKFHPIPSFERLYKSERADKVWPPELQQKFISTARPAM 191 Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPI 250 Q A + + +R D I++ KTG + + L Sbjct: 192 Q--TAMILVRNTAMRAIDIRGFAWTRYDGQRVQIRSHKTGKWLWIPATRELRAHLDCLKR 249 Query: 251 GKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMA 309 + + F+ F+ A G + + H R +AT+ A+AGATA E+ Sbjct: 250 TGALVLLTPSGKAYTRRYFNEHFREDADAIGAGDLNFHDNRGTAATLLAEAGATAPEIAE 309 Query: 310 TYGWKTVDQAETYTKG-ADRIRLGIKNSRRISSVVD 344 W A R L ++ D Sbjct: 310 ALTWTVDKAQRIIDAYLARRGVLAANAIAKLEDYRD 345 >gi|89894917|ref|YP_518404.1| hypothetical protein DSY2171 [Desulfitobacterium hafniense Y51] gi|89334365|dbj|BAE83960.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 290 Score = 122 bits (307), Expect = 7e-26, Method: Composition-based stats. Identities = 46/269 (17%), Positives = 94/269 (34%), Gaps = 12/269 (4%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP-SSA 133 I + L+ + + +I + +ITT +R + K SS Sbjct: 17 IQLFLAGKKLEGLSDLTLKGYGIEL-RIFAEHVHKAADEITTADLRLYLGEFKGLRLSSI 75 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193 L+ ++ F W ++ + +P ++ PK++ + + E+++ + + R Sbjct: 76 SGKLSVLKSFFSWLAAEDILLKDPSRKIKPPKKEKRIPKALSIEELEMLREAC-ITPRER 134 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG----FMKLLAMT 248 E + +G R S+ + + S K TV K L Sbjct: 135 ALIEVMYATGCRLSEVQKMNRDDVDYQTMSASVIGKGNKERTVYFSYKAMYHLKKYLMRR 194 Query: 249 PIGKETFFINNDK--QKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATA 304 E FI + ++++A K A ++ V K H +R AT+ + GA Sbjct: 195 ADEAEALFITERRPYRRLSARGIQREVKLIADRSEVRKNVHPHVLRHTFATLMLNNGADI 254 Query: 305 HELMATYGWKTVDQAETYTKGADRIRLGI 333 + A G + + Y + D + + Sbjct: 255 ASVQALLGHEDPGTTQIYAQSTDERKQQV 283 >gi|16131663|ref|NP_418256.1| site-specific tyrosine recombinase [Escherichia coli str. K-12 substr. MG1655] gi|26250551|ref|NP_756591.1| site-specific tyrosine recombinase XerC [Escherichia coli CFT073] gi|74314323|ref|YP_312742.1| site-specific tyrosine recombinase XerC [Shigella sonnei Ss046] gi|82546162|ref|YP_410109.1| site-specific tyrosine recombinase XerC [Shigella boydii Sb227] gi|89110208|ref|AP_003988.1| site-specific tyrosine recombinase [Escherichia coli str. K-12 substr. W3110] gi|157163288|ref|YP_001460606.1| site-specific tyrosine recombinase XerC [Escherichia coli HS] gi|170022166|ref|YP_001727120.1| site-specific tyrosine recombinase XerC [Escherichia coli ATCC 8739] gi|170083293|ref|YP_001732613.1| site-specific tyrosine recombinase [Escherichia coli str. K-12 substr. DH10B] gi|170683603|ref|YP_001746128.1| site-specific tyrosine recombinase XerC [Escherichia coli SMS-3-5] gi|187731086|ref|YP_001882505.1| site-specific tyrosine recombinase XerC [Shigella boydii CDC 3083-94] gi|188496206|ref|ZP_03003476.1| tyrosine recombinase XerC [Escherichia coli 53638] gi|191166069|ref|ZP_03027904.1| tyrosine recombinase XerC [Escherichia coli B7A] gi|193065702|ref|ZP_03046767.1| tyrosine recombinase XerC [Escherichia coli E22] gi|194429226|ref|ZP_03061754.1| tyrosine recombinase XerC [Escherichia coli B171] gi|209921289|ref|YP_002295373.1| site-specific tyrosine recombinase XerC [Escherichia coli SE11] gi|218550965|ref|YP_002384756.1| site-specific tyrosine recombinase XerC [Escherichia fergusonii ATCC 35469] gi|218692087|ref|YP_002400299.1| site-specific tyrosine recombinase XerC [Escherichia coli ED1a] gi|218697529|ref|YP_002405196.1| site-specific tyrosine recombinase XerC [Escherichia coli 55989] gi|218701275|ref|YP_002408904.1| site-specific tyrosine recombinase XerC [Escherichia coli IAI39] gi|218707445|ref|YP_002414964.1| site-specific tyrosine recombinase XerC [Escherichia coli UMN026] gi|227888604|ref|ZP_04006409.1| site-specific tyrosine recombinase [Escherichia coli 83972] gi|238902887|ref|YP_002928683.1| site-specific tyrosine recombinase [Escherichia coli BW2952] gi|254039023|ref|ZP_04873074.1| tyrosine recombinase xerC [Escherichia sp. 1_1_43] gi|256021445|ref|ZP_05435310.1| site-specific tyrosine recombinase XerC [Shigella sp. D9] gi|256026158|ref|ZP_05440023.1| site-specific tyrosine recombinase XerC [Escherichia sp. 4_1_40B] gi|260846413|ref|YP_003224191.1| site-specific tyrosine recombinase XerC [Escherichia coli O103:H2 str. 12009] gi|260857783|ref|YP_003231674.1| site-specific tyrosine recombinase XerC [Escherichia coli O26:H11 str. 11368] gi|260870536|ref|YP_003236938.1| site-specific tyrosine recombinase XerC [Escherichia coli O111:H- str. 11128] gi|293407438|ref|ZP_06651358.1| xerC [Escherichia coli FVEC1412] gi|293413253|ref|ZP_06655915.1| tyrosine recombinase XerC [Escherichia coli B354] gi|293468129|ref|ZP_06664541.1| tyrosine recombinase XerC [Escherichia coli B088] gi|298383178|ref|ZP_06992772.1| tyrosine recombinase xerC [Escherichia coli FVEC1302] gi|300818718|ref|ZP_07098925.1| tyrosine recombinase XerC [Escherichia coli MS 107-1] gi|300823347|ref|ZP_07103478.1| tyrosine recombinase XerC [Escherichia coli MS 119-7] gi|300900639|ref|ZP_07118797.1| tyrosine recombinase XerC [Escherichia coli MS 198-1] gi|300939969|ref|ZP_07154597.1| tyrosine recombinase XerC [Escherichia coli MS 21-1] gi|300950424|ref|ZP_07164346.1| tyrosine recombinase XerC [Escherichia coli MS 116-1] gi|300955183|ref|ZP_07167580.1| tyrosine recombinase XerC [Escherichia coli MS 175-1] gi|300985705|ref|ZP_07177560.1| tyrosine recombinase XerC [Escherichia coli MS 45-1] gi|301025744|ref|ZP_07189259.1| tyrosine recombinase XerC [Escherichia coli MS 69-1] gi|301029028|ref|ZP_07192182.1| tyrosine recombinase XerC [Escherichia coli MS 196-1] gi|301047307|ref|ZP_07194393.1| tyrosine recombinase XerC [Escherichia coli MS 185-1] gi|301646121|ref|ZP_07246021.1| tyrosine recombinase XerC [Escherichia coli MS 146-1] gi|307140510|ref|ZP_07499866.1| site-specific tyrosine recombinase XerC [Escherichia coli H736] gi|307313615|ref|ZP_07593235.1| tyrosine recombinase XerC [Escherichia coli W] gi|331644544|ref|ZP_08345664.1| tyrosine recombinase XerC [Escherichia coli H736] gi|331660156|ref|ZP_08361092.1| tyrosine recombinase XerC [Escherichia coli TA206] gi|331670657|ref|ZP_08371494.1| tyrosine recombinase XerC [Escherichia coli TA271] gi|331679921|ref|ZP_08380584.1| tyrosine recombinase XerC [Escherichia coli H591] gi|331685531|ref|ZP_08386115.1| tyrosine recombinase XerC [Escherichia coli H299] gi|67475542|sp|P0A8P6|XERC_ECOLI RecName: Full=Tyrosine recombinase xerC gi|67475545|sp|P0A8P7|XERC_ECOL6 RecName: Full=Tyrosine recombinase xerC gi|123728303|sp|Q31UH7|XERC_SHIBS RecName: Full=Tyrosine recombinase xerC gi|123732258|sp|Q3YVF5|XERC_SHISS RecName: Full=Tyrosine recombinase xerC gi|166918884|sp|A8A6R9|XERC_ECOHS RecName: Full=Tyrosine recombinase xerC gi|189030076|sp|B1IW93|XERC_ECOLC RecName: Full=Tyrosine recombinase xerC gi|254799333|sp|B7L968|XERC_ECO55 RecName: Full=Tyrosine recombinase xerC gi|254799335|sp|B7NTD1|XERC_ECO7I RecName: Full=Tyrosine recombinase xerC gi|254799336|sp|B7N2A1|XERC_ECO81 RecName: Full=Tyrosine recombinase xerC gi|254799338|sp|B1XAH7|XERC_ECODH RecName: Full=Tyrosine recombinase xerC gi|254799339|sp|B7NFB3|XERC_ECOLU RecName: Full=Tyrosine recombinase xerC gi|254799340|sp|B6I4F2|XERC_ECOSE RecName: Full=Tyrosine recombinase xerC gi|254799341|sp|B1LLY2|XERC_ECOSM RecName: Full=Tyrosine recombinase xerC gi|254799342|sp|B7LU45|XERC_ESCF3 RecName: Full=Tyrosine recombinase xerC gi|254799357|sp|B2TUW7|XERC_SHIB3 RecName: Full=Tyrosine recombinase xerC gi|259710430|sp|C4ZZ74|XERC_ECOBW RecName: Full=Tyrosine recombinase xerC gi|26110981|gb|AAN83165.1|AE016769_280 Integrase/recombinase xerC [Escherichia coli CFT073] gi|148270|gb|AAA24763.1| lambda-integrase [Escherichia coli] gi|1790244|gb|AAC76814.1| site-specific tyrosine recombinase [Escherichia coli str. K-12 substr. MG1655] gi|73857800|gb|AAZ90507.1| site-specific recombinase, acts on cer sequence of ColE1, effects chromosome segregation at cell division [Shigella sonnei Ss046] gi|81247573|gb|ABB68281.1| site-specific recombinase [Shigella boydii Sb227] gi|85676239|dbj|BAE77489.1| site-specific tyrosine recombinase [Escherichia coli str. K12 substr. W3110] gi|157068968|gb|ABV08223.1| tyrosine recombinase XerC [Escherichia coli HS] gi|169757094|gb|ACA79793.1| tyrosine recombinase XerC [Escherichia coli ATCC 8739] gi|169891128|gb|ACB04835.1| site-specific tyrosine recombinase [Escherichia coli str. K-12 substr. DH10B] gi|170521321|gb|ACB19499.1| tyrosine recombinase XerC [Escherichia coli SMS-3-5] gi|187428078|gb|ACD07352.1| tyrosine recombinase XerC [Shigella boydii CDC 3083-94] gi|188491405|gb|EDU66508.1| tyrosine recombinase XerC [Escherichia coli 53638] gi|190903845|gb|EDV63559.1| tyrosine recombinase XerC [Escherichia coli B7A] gi|192926669|gb|EDV81298.1| tyrosine recombinase XerC [Escherichia coli E22] gi|194412738|gb|EDX29032.1| tyrosine recombinase XerC [Escherichia coli B171] gi|209914548|dbj|BAG79622.1| recombinase [Escherichia coli SE11] gi|218354261|emb|CAV00939.1| site-specific tyrosine recombinase [Escherichia coli 55989] gi|218358506|emb|CAQ91153.1| site-specific tyrosine recombinase [Escherichia fergusonii ATCC 35469] gi|218371261|emb|CAR19095.1| site-specific tyrosine recombinase [Escherichia coli IAI39] gi|218429651|emb|CAR10472.1| site-specific tyrosine recombinase [Escherichia coli ED1a] gi|218434542|emb|CAR15469.1| site-specific tyrosine recombinase [Escherichia coli UMN026] gi|226838714|gb|EEH70742.1| tyrosine recombinase xerC [Escherichia sp. 1_1_43] gi|227834443|gb|EEJ44909.1| site-specific tyrosine recombinase [Escherichia coli 83972] gi|238863558|gb|ACR65556.1| site-specific tyrosine recombinase [Escherichia coli BW2952] gi|257756432|dbj|BAI27934.1| site-specific tyrosine recombinase XerC [Escherichia coli O26:H11 str. 11368] gi|257761560|dbj|BAI33057.1| site-specific tyrosine recombinase XerC [Escherichia coli O103:H2 str. 12009] gi|257766892|dbj|BAI38387.1| site-specific tyrosine recombinase XerC [Escherichia coli O111:H- str. 11128] gi|260451346|gb|ACX41768.1| tyrosine recombinase XerC [Escherichia coli DH1] gi|291321507|gb|EFE60945.1| tyrosine recombinase XerC [Escherichia coli B088] gi|291425549|gb|EFE98587.1| xerC [Escherichia coli FVEC1412] gi|291468201|gb|EFF10698.1| tyrosine recombinase XerC [Escherichia coli B354] gi|298276414|gb|EFI17933.1| tyrosine recombinase xerC [Escherichia coli FVEC1302] gi|299878022|gb|EFI86233.1| tyrosine recombinase XerC [Escherichia coli MS 196-1] gi|300300826|gb|EFJ57211.1| tyrosine recombinase XerC [Escherichia coli MS 185-1] gi|300317900|gb|EFJ67684.1| tyrosine recombinase XerC [Escherichia coli MS 175-1] gi|300355855|gb|EFJ71725.1| tyrosine recombinase XerC [Escherichia coli MS 198-1] gi|300395867|gb|EFJ79405.1| tyrosine recombinase XerC [Escherichia coli MS 69-1] gi|300407979|gb|EFJ91517.1| tyrosine recombinase XerC [Escherichia coli MS 45-1] gi|300450231|gb|EFK13851.1| tyrosine recombinase XerC [Escherichia coli MS 116-1] gi|300455173|gb|EFK18666.1| tyrosine recombinase XerC [Escherichia coli MS 21-1] gi|300524133|gb|EFK45202.1| tyrosine recombinase XerC [Escherichia coli MS 119-7] gi|300528684|gb|EFK49746.1| tyrosine recombinase XerC [Escherichia coli MS 107-1] gi|301075647|gb|EFK90453.1| tyrosine recombinase XerC [Escherichia coli MS 146-1] gi|306906596|gb|EFN37108.1| tyrosine recombinase XerC [Escherichia coli W] gi|307555937|gb|ADN48712.1| integrase/recombinase XerC [Escherichia coli ABU 83972] gi|309704246|emb|CBJ03594.1| tyrosine recombinase [Escherichia coli ETEC H10407] gi|315063103|gb|ADT77430.1| site-specific tyrosine recombinase [Escherichia coli W] gi|315138388|dbj|BAJ45547.1| xerC [Escherichia coli DH1] gi|315293146|gb|EFU52498.1| tyrosine recombinase XerC [Escherichia coli MS 153-1] gi|315296792|gb|EFU56084.1| tyrosine recombinase XerC [Escherichia coli MS 16-3] gi|320185472|gb|EFW60241.1| Tyrosine recombinase XerC [Shigella flexneri CDC 796-83] gi|320198482|gb|EFW73083.1| Tyrosine recombinase XerC [Escherichia coli EC4100B] gi|323155217|gb|EFZ41401.1| tyrosine recombinase XerC [Escherichia coli EPECa14] gi|323161125|gb|EFZ47043.1| tyrosine recombinase XerC [Escherichia coli E128010] gi|323173426|gb|EFZ59055.1| tyrosine recombinase XerC [Escherichia coli LT-68] gi|323177824|gb|EFZ63408.1| tyrosine recombinase XerC [Escherichia coli 1180] gi|323182583|gb|EFZ67987.1| tyrosine recombinase XerC [Escherichia coli 1357] gi|323380833|gb|ADX53101.1| tyrosine recombinase XerC [Escherichia coli KO11] gi|323934199|gb|EGB30630.1| tyrosine recombinase XerC [Escherichia coli E1520] gi|323938947|gb|EGB35166.1| tyrosine recombinase XerC [Escherichia coli E482] gi|323943787|gb|EGB39882.1| tyrosine recombinase XerC [Escherichia coli H120] gi|324016212|gb|EGB85431.1| tyrosine recombinase XerC [Escherichia coli MS 117-3] gi|324111036|gb|EGC05023.1| tyrosine recombinase XerC [Escherichia fergusonii B253] gi|324115726|gb|EGC09661.1| tyrosine recombinase XerC [Escherichia coli E1167] gi|331036216|gb|EGI08451.1| tyrosine recombinase XerC [Escherichia coli H736] gi|331052724|gb|EGI24759.1| tyrosine recombinase XerC [Escherichia coli TA206] gi|331062130|gb|EGI34052.1| tyrosine recombinase XerC [Escherichia coli TA271] gi|331072468|gb|EGI43800.1| tyrosine recombinase XerC [Escherichia coli H591] gi|331077232|gb|EGI48446.1| tyrosine recombinase XerC [Escherichia coli H299] gi|332089061|gb|EGI94172.1| tyrosine recombinase XerC [Shigella boydii 3594-74] gi|332105033|gb|EGJ08379.1| tyrosine recombinase xerC [Shigella sp. D9] Length = 298 Score = 122 bits (307), Expect = 7e-26, Method: Composition-based stats. Identities = 42/270 (15%), Positives = 91/270 (33%), Gaps = 20/270 (7%) Query: 75 ISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITT------KHIRSGVESRK 127 + Y + L+ + ++++ + II + + + ++ + Sbjct: 8 VERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRKG 67 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186 +S L+++R F W V Q + NP V PK + +DM + Sbjct: 68 LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDIDI 127 Query: 187 --SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT--------VE 236 + R E + +GLR S+ ++HL + G+ V Sbjct: 128 NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAVA 187 Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSA 294 + ++ L + + F++ ++++A F K G+N H +R A Sbjct: 188 WIEHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRHSFA 247 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTK 324 T ++ + G + + YT Sbjct: 248 THMLESSGDLRGVQELLGHANLSTTQIYTH 277 >gi|308172775|ref|YP_003919480.1| Tyrosine recombinase xerD [Bacillus amyloliquefaciens DSM 7] gi|307605639|emb|CBI42010.1| Tyrosine recombinase xerD [Bacillus amyloliquefaciens DSM 7] Length = 321 Score = 122 bits (307), Expect = 7e-26, Method: Composition-based stats. Identities = 43/300 (14%), Positives = 97/300 (32%), Gaps = 22/300 (7%) Query: 51 LTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF---DQIIRKSG 107 + + P + T + + + + +L+ ++ + + ++ + G Sbjct: 6 RSNIIAAVPETDKPEIELTDFETAYNAFIRECKIKNLSEHTLKYYRNELLSFRSMLEQQG 65 Query: 108 -DFDYRKITTKHIRS-----GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV 161 KIT ++ ++ +S L ++R F + + + NP + Sbjct: 66 VSTRPEKITLPILKENVIVYMMDKLGRKETSINTRLRAIRAFFNFLEKNRMIGDNPAKEL 125 Query: 162 ERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHL 217 K+K E I +++E ++ +G+ + L+ +G+R + V+ + Sbjct: 126 SLVKQKKEVIETFSREQLRDILRQPDQGTFTGFRDYTIMLLLIETGVRVRELTDISVKDI 185 Query: 218 Q-NNIFSIKTQKTGTIITVELPDGFMKLLA-----MTPIGKETFFINNDKQKMNATQFSI 271 + + + K V + L + + F+ D + Q Sbjct: 186 RWEDSQILINGKGYKERLVPIQSTVKTRLRKYVQIRGDVPNDALFVTIDNTPLTTRQVQN 245 Query: 272 WFKAKATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 A + S H R A +S GA L A G ++D Y R Sbjct: 246 RLSKYGRMANIKNVRCSPHTFRHTFAKMSVQNGADVFALQAVLGHSSLDMVRNYVNLFSR 305 >gi|238855698|ref|ZP_04645995.1| tyrosine recombinase XerC [Lactobacillus jensenii 269-3] gi|260664453|ref|ZP_05865305.1| tyrosine recombinase XerC [Lactobacillus jensenii SJ-7A-US] gi|282932212|ref|ZP_06337659.1| tyrosine recombinase XerC [Lactobacillus jensenii 208-1] gi|313472147|ref|ZP_07812639.1| tyrosine recombinase XerC [Lactobacillus jensenii 1153] gi|238831683|gb|EEQ24023.1| tyrosine recombinase XerC [Lactobacillus jensenii 269-3] gi|239529518|gb|EEQ68519.1| tyrosine recombinase XerC [Lactobacillus jensenii 1153] gi|260561518|gb|EEX27490.1| tyrosine recombinase XerC [Lactobacillus jensenii SJ-7A-US] gi|281303662|gb|EFA95817.1| tyrosine recombinase XerC [Lactobacillus jensenii 208-1] Length = 302 Score = 122 bits (307), Expect = 7e-26, Method: Composition-based stats. Identities = 41/280 (14%), Positives = 102/280 (36%), Gaps = 25/280 (8%) Query: 70 TLKWLISEYRKSAHW-GSLAVNSRISFESYF----DQIIRKSGDFDYRKITTKHIRSGVE 124 T K L+ +++ + + + ++ + D G ++++T++ I + Sbjct: 2 TKKSLLEQFKDYLAYERGYSNLTLTAYLNDLKQAEDFWKNNGGFNGFKQVTSRDIEIYIA 61 Query: 125 SRKHT---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 S T +S + L+S++ +K+ R+ V ++P +V ++ + + + ++++ Sbjct: 62 SLASTGLSQASQARKLSSLKSFYKFLTRRNLVEVDPTQTVSIHRKSKKLPEFFYEPEIKK 121 Query: 182 FKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVE 236 S + + FE +G+R S+ ++ + + + K V Sbjct: 122 VLDSLSASDKLTVRNKAMFELFYATGMRVSEVSNLTLEQIDFDVQMILVHGKGNKDRYVP 181 Query: 237 LPDGFMKLLAM----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NK 284 D L F++N ++ + + K G+ N Sbjct: 182 FGDYAKACLLRYLNEARRLFNPDDDNHYVFLDNRGHQLTSRGIEYIMRKVFQKGGLSANV 241 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R AT + GA + G +++ + YT Sbjct: 242 HPHELRHTFATQMLNNGADLRSVQELLGHESLSTTQIYTH 281 >gi|323167559|gb|EFZ53265.1| tyrosine recombinase XerC [Shigella sonnei 53G] Length = 298 Score = 122 bits (307), Expect = 7e-26, Method: Composition-based stats. Identities = 45/272 (16%), Positives = 92/272 (33%), Gaps = 24/272 (8%) Query: 75 ISEYRKSAH-WGSLAVNSRISFESYFDQII--------RKSGDFDYRKITTKHIRSGVES 125 + Y + L+ + ++++ + II + D + +RS Sbjct: 8 VERYLRYLSVERQLSPITLLNYQRQLEAIINFASENVLQSWQQCDVTMVRNFAVRSRR-- 65 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + +S L+++R F W V Q + NP V PK + +DM + Sbjct: 66 KGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDI 125 Query: 186 W---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT-------- 234 + R E + +GLR S+ ++HL + G+ Sbjct: 126 DINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNA 185 Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKF 292 V + ++ L + + F++ ++++A F K G+N H +R Sbjct: 186 VAWIEHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRHS 245 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTK 324 AT ++ + G + + YT Sbjct: 246 FATHMLESSGDLRGVQELLGHANLSTTQIYTH 277 >gi|258590894|emb|CBE67189.1| Tyrosine recombinase xerC [NC10 bacterium 'Dutch sediment'] Length = 349 Score = 122 bits (307), Expect = 7e-26, Method: Composition-based stats. Identities = 44/246 (17%), Positives = 84/246 (34%), Gaps = 21/246 (8%) Query: 100 DQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCL 159 D + R+ + + + + + R SS + L ++R F++ R+ VA NP Sbjct: 87 DALHRQIKPGEIDVLAIRAFVADLHRRGIARSSIARKLATLRSFFRYLCREGVVAANPAK 146 Query: 160 SVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQ 215 V PK T +++ + + E G++ E SG+R S+ V+ Sbjct: 147 LVSTPKLPKRLPAYLTVDEVDRLLASPGEQDLPGARDLAILELFYASGIRLSELTGLDVR 206 Query: 216 HLQNNIFSIKT-QKTGTIITVELPDGFMKLLAM--------------TPIGKETFFINND 260 + ++ K G V + + L F+N Sbjct: 207 DVDIREGLVRVKGKGGKERIVPVGSKAIVALRRYLDRRSDLIHESKRVAPESVALFLNRQ 266 Query: 261 KQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318 +++ + ++GV + HG+R AT AGA + G + Sbjct: 267 GGRLSQRSIARIVLKHLNQSGVGPKITPHGLRHSYATHLLQAGADLRAIQELLGHSRLST 326 Query: 319 AETYTK 324 + YT Sbjct: 327 TQRYTH 332 >gi|215489139|ref|YP_002331570.1| site-specific tyrosine recombinase XerC [Escherichia coli O127:H6 str. E2348/69] gi|312969461|ref|ZP_07783663.1| tyrosine recombinase XerC [Escherichia coli 2362-75] gi|254799331|sp|B7UNC8|XERC_ECO27 RecName: Full=Tyrosine recombinase xerC gi|215267211|emb|CAS11659.1| site-specific tyrosine recombinase XerC [Escherichia coli O127:H6 str. E2348/69] gi|312286008|gb|EFR13926.1| tyrosine recombinase XerC [Escherichia coli 2362-75] gi|320197620|gb|EFW72232.1| Tyrosine recombinase XerC [Escherichia coli WV_060327] gi|325499220|gb|EGC97079.1| site-specific tyrosine recombinase XerC [Escherichia fergusonii ECD227] Length = 298 Score = 122 bits (307), Expect = 7e-26, Method: Composition-based stats. Identities = 42/270 (15%), Positives = 91/270 (33%), Gaps = 20/270 (7%) Query: 75 ISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITT------KHIRSGVESRK 127 + Y + L+ + ++++ + II + + + ++ + Sbjct: 8 VERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRKG 67 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186 +S L+++R F W V Q + NP V PK + +DM + Sbjct: 68 LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDIDI 127 Query: 187 --SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT--------VE 236 + R E + +GLR S+ ++HL + G+ V Sbjct: 128 NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAVA 187 Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSA 294 + ++ L + + F++ ++++A F K G+N H +R A Sbjct: 188 WIEHWLDLRNLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRHSFA 247 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTK 324 T ++ + G + + YT Sbjct: 248 THMLESSGDLRGVQELLGHANLSTTQIYTH 277 >gi|120404256|ref|YP_954085.1| site-specific tyrosine recombinase XerD [Mycobacterium vanbaalenii PYR-1] gi|119957074|gb|ABM14079.1| tyrosine recombinase XerD subunit [Mycobacterium vanbaalenii PYR-1] Length = 317 Score = 122 bits (307), Expect = 7e-26, Method: Composition-based stats. Identities = 42/274 (15%), Positives = 86/274 (31%), Gaps = 35/274 (12%) Query: 85 GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKH----------TPS 131 +A N+ S+ + G D + + + S + + Sbjct: 25 RGVAANTLSSYRRDLRRYAEHLASRGVTDLAGVAEADVSEFLVSLRRGDPDNGVVPLSAV 84 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----- 186 SA + + ++R L ++A + ++ V+ P + + +++ Sbjct: 85 SAARAVIAVRGLHRFAAAEGITTVDVAREVKPPTPGRRLPKSLSIDEVLALLEAAGGDGE 144 Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFM 242 + R E L +G R S++ V + + K G + + + Sbjct: 145 ADGPLTLRNRALLELLYSTGARISEAVGLDVDDVDTEARSVLLRGKGGKQRLIPIGRPAV 204 Query: 243 KLL-----------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289 L A G F+N +++ + A +AG+ S H + Sbjct: 205 SALDNYLVRGRPDLARRGRGTPAIFLNARGGRLSRQSAWQVLQDAAERAGITATVSPHVL 264 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYT 323 R AT D GA + G +V + YT Sbjct: 265 RHSFATHLLDGGADVRVVQELLGHASVTTTQIYT 298 >gi|300787863|ref|YP_003768154.1| integrase/recombinase XerD [Amycolatopsis mediterranei U32] gi|299797377|gb|ADJ47752.1| integrase/recombinase XerD [Amycolatopsis mediterranei U32] Length = 310 Score = 122 bits (307), Expect = 7e-26, Method: Composition-based stats. Identities = 53/288 (18%), Positives = 90/288 (31%), Gaps = 30/288 (10%) Query: 66 KKPTTLKWLISEYRKS-AHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHI-- 119 P +I+ Y A N+ S+ + G +T+ H+ Sbjct: 3 SSPHRTADVIAAYLDHLVVERGTARNTLDSYARDLRRYAAHLDGLGVAKIADVTSAHVTA 62 Query: 120 ------RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173 E R SSA + L ++R L K+A + NP V P + Sbjct: 63 FGAALREGDDEHRPLAASSAARALVAVRGLHKFAHAEGLTEHNPAREVRPPTPAKRLPKA 122 Query: 174 WTKEDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN-NIFSIKTQK 228 +D+ + + R E L +G R S++ V + + K Sbjct: 123 LPVDDVLRLLETPPPDGERALRDRALLELLYSTGARISEAVGLDVDDVDGAERTVLLDGK 182 Query: 229 TGTIITVELPDGFMKLLAMTPI-----------GKETFFINNDKQKMNATQFSIWFKAKA 277 G V + + L + G F+N +++ K A Sbjct: 183 GGKQRLVPIGRPALAALHAYTVRARPALAVHGRGTAALFLNARGSRLSRQSAWQVLKDTA 242 Query: 278 TKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 +AG+ S H +R AT + GA + G +V + YT Sbjct: 243 GRAGITAVVSPHTLRHSFATHLLEGGADVRVVQELLGHASVTTTQVYT 290 >gi|239827068|ref|YP_002949692.1| integrase [Geobacillus sp. WCH70] gi|239807361|gb|ACS24426.1| integrase family protein [Geobacillus sp. WCH70] Length = 301 Score = 122 bits (307), Expect = 7e-26, Method: Composition-based stats. Identities = 43/295 (14%), Positives = 109/295 (36%), Gaps = 30/295 (10%) Query: 71 LKWLISEYRKSAH-WGSLAVNSRISFE---SYFDQIIRKSG-DFDYRKITTKHIRSGVES 125 + I E+ + ++N+ + F+ + + G IT H+R ++ Sbjct: 3 FRQAIDEFVLYLQIEKNYSLNTVDGYAYDLRCFENFLVQHGYSVQLNNITKTHVRRFIQH 62 Query: 126 R----KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 + P + + ++ ++ K+ V++ + + + ++ PK ++ + ++++ Sbjct: 63 QITKENVKPRTIYRRISCLKSFSKYCVKENLIDNDFMIGIDTPKTDSKLPTYMSLSELRK 122 Query: 182 FKSFWSE-----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITV 235 F + + L F+ L +G+R S+ + + + +I+ K + Sbjct: 123 LFHFLEQDNSRMAMRNHLLFKLLATTGMRRSEIVELTWEQIDLSNNTIRIYGKGKKERLL 182 Query: 236 ELPDGFMKLLAM--------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---K 284 L + L+ + F+N + +K+N FK KAG+ Sbjct: 183 PLHPMVVPLMKSYMESLEEYQLHPSQPVFLNKNGKKLNPRGLHKIFKDILQKAGLPPQRF 242 Query: 285 SAHGVRKFSATISADAGA---TAHELMATYGWKTVDQAETYTK-GADRIRLGIKN 335 S H +R AT+ + G +++ + YT ++ + I+ Sbjct: 243 SLHHLRHTFATLLIQENKENVDLRTVQELLGHESLVTTQVYTHVDFEQKKKAIET 297 >gi|303241172|ref|ZP_07327680.1| integrase family protein [Acetivibrio cellulolyticus CD2] gi|302591299|gb|EFL61039.1| integrase family protein [Acetivibrio cellulolyticus CD2] Length = 330 Score = 122 bits (306), Expect = 7e-26, Method: Composition-based stats. Identities = 41/217 (18%), Positives = 87/217 (40%), Gaps = 17/217 (7%) Query: 124 ESRKHTPSSAIQFLTSMRVLFKWA-VRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 +R +T + + + S++ F + + + + +NP +E PK R E+ +Q Sbjct: 88 NNRDNTSYARARKVASLKSFFNYLFNKAKLLNVNPASELESPKILKRLPRYLNVEESKQL 147 Query: 183 KSFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL-- 237 S + G+ + L G+R S+ + +++N+ ++ K ++ L Sbjct: 148 LSSVNTGTYSERDYAMLTLFLNCGMRLSELVGININNIKNDTLTVI-GKGDKERSIPLNS 206 Query: 238 --PDGFMKLLAMTPI----GKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHG 288 + + + P+ K FI+ KQ+++ K +AG++ S H Sbjct: 207 ACLEAIEAYMKVRPVNGVKDKNALFISGRKQRISKESVQKIVKKYIKQAGLDPQRYSTHK 266 Query: 289 VRKFSATISADAGA-TAHELMATYGWKTVDQAETYTK 324 +R +AT+ G L G +++ E YT Sbjct: 267 LRHTAATLMYKYGKVDIRALQELLGHESIATTEIYTH 303 >gi|188532374|ref|YP_001906171.1| site-specific tyrosine recombinase XerC [Erwinia tasmaniensis Et1/99] gi|188027416|emb|CAO95263.1| Tyrosine recombinase XerC [Erwinia tasmaniensis Et1/99] Length = 302 Score = 122 bits (306), Expect = 7e-26, Method: Composition-based stats. Identities = 37/259 (14%), Positives = 83/259 (32%), Gaps = 19/259 (7%) Query: 85 GSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIRSGVESRKH---TPSSAIQFLT 138 L+ ++I++ +I + D+ ++ +RS P+S L+ Sbjct: 22 RQLSPLTQINYRRQLSALIVLLDELKVVDWARLDAALVRSLAARSTRSGLKPASLALRLS 81 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQPRLA 195 ++R W + Q + NP V P+ + +++ + + R Sbjct: 82 ALRSFLDWLMSQGMIKANPAKGVATPRAGRHLPKNIDVDEVNRLLEIDLNDPLAVRDRAM 141 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMKLLAMT------ 248 E + +GLR S+ + HL K + + + + Sbjct: 142 LEVMYGAGLRLSELVGIDLGHLDLASGEVWVVGKGSKERRLPMGRTAVHWIENWLEMREL 201 Query: 249 -PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAH 305 F++N ++++ F K G+ + H +R AT ++ Sbjct: 202 FDPEDNALFLSNKGKRISTRNVQKRFAEWGVKQGISSHIHPHKLRHSFATHMLESSGDLR 261 Query: 306 ELMATYGWKTVDQAETYTK 324 + G + + YT Sbjct: 262 AVQELLGHANLTTTQIYTH 280 >gi|34222761|sp|O31087|XERC_SERMA RecName: Full=Tyrosine recombinase xerC gi|2625019|gb|AAC46276.1| site specific recombinase [Serratia marcescens] Length = 303 Score = 122 bits (306), Expect = 7e-26, Method: Composition-based stats. Identities = 42/275 (15%), Positives = 97/275 (35%), Gaps = 20/275 (7%) Query: 70 TLKWLISEYRKSAH-WGSLAVNSRISFES---YFDQIIRKSGDFDYRKITTKHIR--SGV 123 +L+ + + + L+ +++S+ ++ ++ G D+ + +R + Sbjct: 7 SLQQPVDAFLRYLKVERQLSPLTQLSYSRQLTALMRLAQEIGVTDWTTLDAARVRMLAAR 66 Query: 124 ESRKHTPSSAIQF-LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 R S+++ L+S+R W V Q + NP + P+ + ++M Q Sbjct: 67 SKRAGLQSASLALRLSSLRSFLDWLVSQGVLHANPAKGIRTPRSGRHLPKNIDVDEMNQL 126 Query: 183 KSFW---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-------- 231 + R E + +GLR S+ +H+ + G+ Sbjct: 127 LEIDLNDPLAVRDRAMLEVMYGAGLRLSELVGLDCRHVDMAAGEVWVMGKGSKERKLPIG 186 Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGV 289 V + ++ + + + F++N ++++ F K GVN H + Sbjct: 187 RTAVTWLEHWLAMRDLFGPQDDAMFLSNQGRRISTRNVQKRFAEWGVKQGVNSHIHPHKL 246 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 R AT ++ + G + + YT Sbjct: 247 RHSFATHMLESSGDLRAVQELLGHANLTTTQIYTH 281 >gi|167945040|ref|ZP_02532114.1| tyrosine recombinase XerD [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 227 Score = 122 bits (306), Expect = 7e-26, Method: Composition-based stats. Identities = 33/207 (15%), Positives = 78/207 (37%), Gaps = 17/207 (8%) Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF----KSFWSEGS 190 + + ++R +K+ ++++ ++ +P +++ PK + ++M+ + G Sbjct: 5 RHIITIRGFYKFLIKEKLISFDPVKNIDIPKTGLSLPEVISSKEMELLIDSVDTKNPRGL 64 Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMK-----L 244 + E L +GLR S+ ++++ I+ K V + ++ + Sbjct: 65 RNAAMLETLYGAGLRVSELVSMKMENINLEASFIRIFGKGSKERIVPIGSFAIEKVRNWI 124 Query: 245 LAMTPI-----GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS 297 + PI F+ + M F K + +G++K + H R AT Sbjct: 125 MHGRPIILKNIPSHYLFVARAGKPMTRQGFWKLLKKYSRASGISKKITPHTFRHSFATHL 184 Query: 298 ADAGATAHELMATYGWKTVDQAETYTK 324 + GA + G + + YT Sbjct: 185 LEGGADLRSVQTMLGHSDISTTQIYTH 211 >gi|282901889|ref|ZP_06309792.1| Phage integrase [Cylindrospermopsis raciborskii CS-505] gi|281193227|gb|EFA68221.1| Phage integrase [Cylindrospermopsis raciborskii CS-505] Length = 287 Score = 122 bits (306), Expect = 7e-26, Method: Composition-based stats. Identities = 45/263 (17%), Positives = 93/263 (35%), Gaps = 20/263 (7%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE---SRKH 128 +WL Y KS H S+ ++ I D T H R+ E Sbjct: 26 QWL---YGKSNH-------SKRNYTRVIRSYISYLSDIHIANSTAAHFRNYQEYLYQSGK 75 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI-RPWTKEDMQQFKSFWS 187 T ++ + ++ F + + + N V+ PK + R T+ ++ + Sbjct: 76 TINTINTYTNIIKSFFTFLRDESVLPTNITHRVKSPKPVSALRERILTRAEIDAMITL-E 134 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI---KTQKTGTIITVELPDGFMKL 244 ++ RL + L + GLR S+ +++N + T K T+ +P Sbjct: 135 TNTRNRLILQLLFFCGLRVSELTILLWADIKDNGSTAYVHITGKGNKQRTLIIPPLLWAS 194 Query: 245 LAMTPIGKETFFINND--KQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGA 302 L E+ + + + + + + G++ S H +R A+++ GA Sbjct: 195 LKSHKTTNESPVFKSRKGGKNLTQKAVWDIVRTASQRIGISASPHWLRHTHASLALHNGA 254 Query: 303 TAHELMATYGWKTVDQAETYTKG 325 +++ + G +V Y Sbjct: 255 DINQVSTSLGHSSVATTTKYLHA 277 >gi|317494831|ref|ZP_07953242.1| tyrosine recombinase XerC [Enterobacteriaceae bacterium 9_2_54FAA] gi|316917156|gb|EFV38504.1| tyrosine recombinase XerC [Enterobacteriaceae bacterium 9_2_54FAA] Length = 303 Score = 122 bits (306), Expect = 8e-26, Method: Composition-based stats. Identities = 42/259 (16%), Positives = 93/259 (35%), Gaps = 19/259 (7%) Query: 85 GSLAVNSRISFESYFDQIIR---KSGDFDYRKITTKHIR---SGVESRKHTPSSAIQFLT 138 L+ ++ S+ II SG D+R++ + +R + + +S L+ Sbjct: 23 RQLSPHTIESYHHQLMAIIEIVSASGLRDWRQLDSNQVRMITARSKRMGLEAASIALRLS 82 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQPRLA 195 S+R W V Q +++NP + PK+ + +D+ + + R Sbjct: 83 SLRSFLDWQVSQGVMSVNPAKGISAPKQARHLPKNLDVDDVNRLLEIDSSDPLAVRDRTM 142 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT--------IITVELPDGFMKLLAM 247 E + +GLR S+ +H+ + G+ + + ++ L + Sbjct: 143 LEVMYGAGLRLSELVGLDCRHMNMASGEVWVLGKGSKERKLPIGRTAIHWLEQWLPLREI 202 Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAH 305 + F++ ++++ F K GV + + H +R AT ++ Sbjct: 203 YDPVDDAVFVSKLGKRISVRSVQKRFAEWGVKQGVTSHINPHKLRHSFATHMLESSGDLR 262 Query: 306 ELMATYGWKTVDQAETYTK 324 + G + + YT Sbjct: 263 AVQELLGHANLTTTQIYTH 281 >gi|304413311|ref|ZP_07394784.1| site-specific tyrosine recombinase [Candidatus Regiella insecticola LSR1] gi|304284154|gb|EFL92547.1| site-specific tyrosine recombinase [Candidatus Regiella insecticola LSR1] Length = 252 Score = 122 bits (306), Expect = 8e-26, Method: Composition-based stats. Identities = 37/231 (16%), Positives = 81/231 (35%), Gaps = 18/231 (7%) Query: 114 ITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173 + + + + +S+ + L++++ F++ R++ +P + PK + Sbjct: 7 LDLQRFFAERIDSHYKATSSARLLSAIKRFFQYLYREKLRINDPTALLSSPKLPQRLPKD 66 Query: 174 WTKEDMQQFKSF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QK 228 +++ ++ + + + E L +GLR S+ + + ++ K Sbjct: 67 LSEKQVEALLNAPNVDIPLQLRDKTMLEVLYATGLRVSELVGLIISDISLRQGVLRVIGK 126 Query: 229 TGTIITVELPDGFMKLLAMTPIGK----------ETFFINNDKQKMNATQFSIWFKAKAT 278 V L + + + + FF +N QKM F K A Sbjct: 127 GNKERLVPLGEEALYWIEQYIEHGRPWLVNGQALDAFFPSNRCQKMTRQTFWYRIKHYAI 186 Query: 279 KAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 A ++ S H +R AT + GA + G + + YT A Sbjct: 187 LANIDSERLSPHVLRHAFATHLLNHGADLRVVQMLLGHSNLSTTQIYTHVA 237 >gi|24115108|ref|NP_709618.1| site-specific tyrosine recombinase XerC [Shigella flexneri 2a str. 301] gi|30064893|ref|NP_839064.1| site-specific tyrosine recombinase XerC [Shigella flexneri 2a str. 2457T] gi|82779010|ref|YP_405359.1| site-specific tyrosine recombinase XerC [Shigella dysenteriae Sd197] gi|194438678|ref|ZP_03070766.1| tyrosine recombinase XerC [Escherichia coli 101-1] gi|253775565|ref|YP_003038396.1| site-specific tyrosine recombinase XerC [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254163753|ref|YP_003046861.1| site-specific tyrosine recombinase XerC [Escherichia coli B str. REL606] gi|293417277|ref|ZP_06659902.1| tyrosine recombinase XerC [Escherichia coli B185] gi|297521542|ref|ZP_06939928.1| site-specific tyrosine recombinase XerC [Escherichia coli OP50] gi|300904066|ref|ZP_07121946.1| tyrosine recombinase XerC [Escherichia coli MS 84-1] gi|300921478|ref|ZP_07137826.1| tyrosine recombinase XerC [Escherichia coli MS 115-1] gi|300930023|ref|ZP_07145455.1| tyrosine recombinase XerC [Escherichia coli MS 187-1] gi|301303707|ref|ZP_07209828.1| tyrosine recombinase XerC [Escherichia coli MS 124-1] gi|309784527|ref|ZP_07679165.1| tyrosine recombinase XerC [Shigella dysenteriae 1617] gi|312971902|ref|ZP_07786076.1| tyrosine recombinase XerC [Escherichia coli 1827-70] gi|331655496|ref|ZP_08356489.1| tyrosine recombinase XerC [Escherichia coli M718] gi|34222798|sp|Q7ZAL9|XERC_SHIFL RecName: Full=Tyrosine recombinase xerC gi|123769525|sp|Q329Y7|XERC_SHIDS RecName: Full=Tyrosine recombinase xerC gi|24054376|gb|AAN45325.1| site-specific recombinase [Shigella flexneri 2a str. 301] gi|30043153|gb|AAP18875.1| site-specific recombinase [Shigella flexneri 2a str. 2457T] gi|81243158|gb|ABB63868.1| site-specific recombinase [Shigella dysenteriae Sd197] gi|194422482|gb|EDX38481.1| tyrosine recombinase XerC [Escherichia coli 101-1] gi|242379341|emb|CAQ34153.1| site-specific recombinase, acts on cer sequence of ColE1, effects chromosome segregation at cell division, subunit of Xer site-specific recombination system [Escherichia coli BL21(DE3)] gi|253326609|gb|ACT31211.1| tyrosine recombinase XerC [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253975654|gb|ACT41325.1| site-specific tyrosine recombinase XerC [Escherichia coli B str. REL606] gi|253979810|gb|ACT45480.1| site-specific tyrosine recombinase XerC [Escherichia coli BL21(DE3)] gi|281603204|gb|ADA76188.1| Tyrosine recombinase xerC [Shigella flexneri 2002017] gi|291431045|gb|EFF04040.1| tyrosine recombinase XerC [Escherichia coli B185] gi|300403946|gb|EFJ87484.1| tyrosine recombinase XerC [Escherichia coli MS 84-1] gi|300411595|gb|EFJ94905.1| tyrosine recombinase XerC [Escherichia coli MS 115-1] gi|300462056|gb|EFK25549.1| tyrosine recombinase XerC [Escherichia coli MS 187-1] gi|300841007|gb|EFK68767.1| tyrosine recombinase XerC [Escherichia coli MS 124-1] gi|308927633|gb|EFP73102.1| tyrosine recombinase XerC [Shigella dysenteriae 1617] gi|310334279|gb|EFQ00484.1| tyrosine recombinase XerC [Escherichia coli 1827-70] gi|313647147|gb|EFS11602.1| tyrosine recombinase XerC [Shigella flexneri 2a str. 2457T] gi|315254176|gb|EFU34144.1| tyrosine recombinase XerC [Escherichia coli MS 85-1] gi|323959066|gb|EGB54735.1| tyrosine recombinase XerC [Escherichia coli H489] gi|323969348|gb|EGB64647.1| tyrosine recombinase XerC [Escherichia coli TA007] gi|331046817|gb|EGI18901.1| tyrosine recombinase XerC [Escherichia coli M718] Length = 298 Score = 122 bits (306), Expect = 8e-26, Method: Composition-based stats. Identities = 44/270 (16%), Positives = 94/270 (34%), Gaps = 20/270 (7%) Query: 75 ISEYRKSAH-WGSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIRSGVESRKHTP 130 + Y + L+ + ++++ + II ++G +++ +R+ + Sbjct: 8 VERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDAAMVRNFAVRSRRKG 67 Query: 131 SSAIQF---LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186 A L+++R F W V Q + NP V PK + +DM + Sbjct: 68 LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDIDI 127 Query: 187 --SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT--------VE 236 + R E + +GLR S+ ++HL + G+ V Sbjct: 128 NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAVA 187 Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSA 294 + ++ L + + F++ ++++A F K G+N H +R A Sbjct: 188 WIEHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRHSFA 247 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTK 324 T ++ + G + + YT Sbjct: 248 THMLESSGDLRGVQELLGHANLSTTQIYTH 277 >gi|138895282|ref|YP_001125735.1| integrase/recombinase [Geobacillus thermodenitrificans NG80-2] gi|134266795|gb|ABO66990.1| Integrase/recombinase [Geobacillus thermodenitrificans NG80-2] Length = 301 Score = 122 bits (306), Expect = 8e-26, Method: Composition-based stats. Identities = 43/295 (14%), Positives = 109/295 (36%), Gaps = 30/295 (10%) Query: 71 LKWLISEYRKSAH-WGSLAVNSRISFE---SYFDQIIRKSG-DFDYRKITTKHIRSGVES 125 + I E+ + ++N+ + F+ + + G IT H+R ++ Sbjct: 3 FRQAIDEFVLYLQIEKNYSLNTVDGYAYDLRCFENFLVQHGYSVQLNSITKTHVRRFIQH 62 Query: 126 R----KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 + P + + ++ ++ K+ V++ + + + ++ PK ++ + ++++ Sbjct: 63 QITKENVKPRTIYRRISCLKSFSKYCVKENLIDNDFMIGIDTPKTDSKLPTYMSLSELRK 122 Query: 182 FKSFWSE-----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITV 235 F + + L F+ L +G+R S+ + + + +I+ K + Sbjct: 123 LFHFLEQDNSRMAMRNHLLFKLLATTGMRRSEIVELTWEQIDLSNNTIRIYGKGKKERLL 182 Query: 236 ELPDGFMKLLAM--------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---K 284 L + L+ + F+N + +K+N FK KAG+ Sbjct: 183 PLHPMVVPLMKSYMESLEEYQLHPSQPVFLNKNGKKLNPRGLHKIFKDILQKAGLPPQRF 242 Query: 285 SAHGVRKFSATISADAGA---TAHELMATYGWKTVDQAETYTK-GADRIRLGIKN 335 S H +R AT+ + G +++ + YT ++ + I+ Sbjct: 243 SLHHLRHTFATLLIQENKENVDLRTVQELLGHESLVTTQVYTHVDFEQKKKAIET 297 >gi|21957074|gb|AAM83976.1|AE013639_5 site-specific recombinase [Yersinia pestis KIM 10] Length = 308 Score = 122 bits (306), Expect = 8e-26, Method: Composition-based stats. Identities = 44/259 (16%), Positives = 87/259 (33%), Gaps = 19/259 (7%) Query: 85 GSLAVNSRISFES---YFDQIIRKSGDFDYRKITTKHIRSGVESRKH---TPSSAIQFLT 138 L+ + S+ +I + G ++ + +RS V K SS L+ Sbjct: 28 RQLSPLTVTSYRRQLSALMEIGEQMGLAHWQTLDAAQVRSLVSRSKRAGLHASSLALRLS 87 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQPRLA 195 ++R W V Q + NP V P+ + +++ + S + R Sbjct: 88 ALRSFLNWLVSQGVLPANPAKGVSTPRSGRHLPKNIDVDEVNKLLSIDLNDPLAVRDRAM 147 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI--------ITVELPDGFMKLLAM 247 E + +GLR S+ +H+ + G+ V ++ L + Sbjct: 148 LEVMYGAGLRLSELVGMNCKHVDLASGDVWVMGKGSKERKVPLGKTAVTWLQHWLALREL 207 Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAH 305 + F+ N ++++A F K GV + H +R AT ++ Sbjct: 208 FEPQDDAIFLANTGKRISARNVQKRFAEWGVKQGVSSHIHPHKLRHSFATHMLESSGDLR 267 Query: 306 ELMATYGWKTVDQAETYTK 324 + G + + YT Sbjct: 268 AVQELLGHANLTTTQIYTH 286 >gi|307307476|ref|ZP_07587210.1| integrase family protein [Shewanella baltica BA175] gi|306910151|gb|EFN40585.1| integrase family protein [Shewanella baltica BA175] Length = 451 Score = 122 bits (306), Expect = 8e-26, Method: Composition-based stats. Identities = 54/307 (17%), Positives = 117/307 (38%), Gaps = 13/307 (4%) Query: 32 RIRLPYPHESTFIPAYMSALTGSTP--KREYINSPRKKPTTLKWLISEYRKSAHWGSLAV 89 R R+ P + + A TG + E+ + + + K + Sbjct: 54 RTRILAPVSALTVKAAREKATGQLQAWREEHTQPSMSASSRFDVFVEQTWKPMIFEHWKP 113 Query: 90 NSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESRKHTP-SSAIQFLTSMRVLFKWA 147 +++ S ++ ++ G + I + +++ + T +A + L +++ +FK A Sbjct: 114 STKRSVLPALNRRLLAHFGRYPLHMINHRMVQAWFDEISKTRKGAANRNLDTLQSVFKLA 173 Query: 148 VRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-----GSQPRLA--FEFLL 200 +RQ + NPC+ + + KR+ R + +MQ+ E GS + A LL Sbjct: 174 LRQGHCLTNPCIGIRQNKRRV-LNRFLSVAEMQRLSVALDECETVGGSIAQCADILRLLL 232 Query: 201 YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINND 260 +G R S+ ++++ N + KTG + + + + +L+ T Sbjct: 233 LTGCRLSEITFLKGEYVRGNELHLPDSKTGAKV-LYIGQAAVDILSRYHCKANTELFPMK 291 Query: 261 KQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320 + + S+W + + + H +R A+ + G + + + G K V Sbjct: 292 QGASTSLVQSLWLRLRKQIGIEDVRLHDLRHTFASYAVMDGCSIPMVASLLGHKKVTMTL 351 Query: 321 TYTKGAD 327 YT D Sbjct: 352 RYTHVGD 358 >gi|229020853|ref|ZP_04177558.1| Integrase/recombinase [Bacillus cereus AH1273] gi|229022059|ref|ZP_04178613.1| Integrase/recombinase [Bacillus cereus AH1272] gi|228739211|gb|EEL89653.1| Integrase/recombinase [Bacillus cereus AH1272] gi|228740440|gb|EEL90733.1| Integrase/recombinase [Bacillus cereus AH1273] Length = 315 Score = 122 bits (306), Expect = 8e-26, Method: Composition-based stats. Identities = 35/261 (13%), Positives = 92/261 (35%), Gaps = 14/261 (5%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134 ++ + +L + + I+ + K++ ++ R ++ Sbjct: 36 LNLFYTDCQLRNLRPYTIKYYRESLQTKIKPL--VLMTEDDIKNMIMEMQRRGLKVTTIN 93 Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGS 190 L + + + + + +++ NP ++ K++ E + +K+ ++ S G Sbjct: 94 TKLRAFKSFYNFLHKHKHIKKNPIADIKLLKQRKEVVPTLSKDQIKLLLSLCDRKTFVGV 153 Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTP- 249 + +L + +R ++ V +++N I+ KT V + + + + Sbjct: 154 RDYTIMMLMLDTAIRVNELANIEVADVKHNEIVIRETKTFFERIVPMSKKLKEQMEIYIK 213 Query: 250 ----IGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGA 302 + F+N D ++ + +G+ SAH R SA + G Sbjct: 214 IRGYAESDKLFLNQDGNELKKRSIQTRIEYYGKLSGIKDVRVSAHTFRHTSAKLFIQNGG 273 Query: 303 TAHELMATYGWKTVDQAETYT 323 A L G +++ + Y Sbjct: 274 NAFHLQQLLGHTSLEITKKYV 294 >gi|71042126|pdb|1Z1B|A Chain A, Crystal Structure Of A Lambda Integrase Dimer Bound To A Coc' Core Site gi|71042127|pdb|1Z1B|B Chain B, Crystal Structure Of A Lambda Integrase Dimer Bound To A Coc' Core Site Length = 356 Score = 122 bits (306), Expect = 8e-26, Method: Composition-based stats. Identities = 60/343 (17%), Positives = 111/343 (32%), Gaps = 25/343 (7%) Query: 7 LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMS---ALTGSTPKREYINS 63 LPP + R+ Y G+ L A + +G K Sbjct: 12 LPPNLY---IRNNGYYCYRDPRTGKEFGLGRDRRIAITEAIQANIELFSGHKHKPLTARI 68 Query: 64 PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123 TL + Y K + + I++ S I R D ITTK I + + Sbjct: 69 NSDNSVTLHSWLDRYEKILASRGIKQKTLINYMSKIKAIRRGLPDAPLEDITTKEIAAML 128 Query: 124 ESRKH--TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 +SA +++ F+ A+ + ++ N + K K R E ++ Sbjct: 129 NGYIDEGKAASAKLIRSTLSDAFREAIAEGHITTNHVAATRAAKSKVRRSRLTADEYLKI 188 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE----- 236 +++ S RLA E + +G R D C + + ++ KTG I + Sbjct: 189 YQAAESSPCWLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAIPTALHI 248 Query: 237 ----LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-----NKSAH 287 + +G ET + ++ +++ S +F +G+ + H Sbjct: 249 DALGISMKETLDKCKEILGGETIIASTRREPLSSGTVSRYFMRARKASGLSFEGDPPTFH 308 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 +R + + + G K+ A DR R Sbjct: 309 ELR-SLSARLYEKQISDKFAQHLLGHKSDTMASQ--XRDDRGR 348 >gi|294085315|ref|YP_003552075.1| phage integrase family protein [Candidatus Puniceispirillum marinum IMCC1322] gi|292664890|gb|ADE39991.1| phage integrase family protein [Candidatus Puniceispirillum marinum IMCC1322] Length = 396 Score = 122 bits (306), Expect = 8e-26, Method: Composition-based stats. Identities = 56/330 (16%), Positives = 104/330 (31%), Gaps = 36/330 (10%) Query: 26 RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWG 85 RKG R+ + T A AL + TL L++ H Sbjct: 54 RKGRPLRMTIGAVQHMTCDAARQRALDH---LATDCGASSDPAITLGALVAGRWHDEHLM 110 Query: 86 SLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKHT-PSSAIQFLTSMRVL 143 +++ ++ + +Q+I G IT + I + T P +A + L + + Sbjct: 111 RCKPSTQRTYRNMLQNQLIPNFGTMQLDAITREAIADWFDRFSQTAPGNANRGLILLNQI 170 Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP---------RL 194 +AVR +A N + + K K + R + E++ + E R Sbjct: 171 LNFAVRHGLLARNVAAGLTKNKGK-KLTRFLSGEELARLYHVMDEHVADCPRTERKQGRD 229 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIG--- 251 L+ +G R + R + + +K KTG V L +L Sbjct: 230 IVRLLILTGCRKGEILRLRWDEIDGDRLRLKDSKTG-PREVHLSLSARAILDRHKRATRS 288 Query: 252 ----------KETFFINN--DKQKMNA-TQFSIWFKAKATKAGVN-KSAHGVRKFSATIS 297 F + Q + + F + +AG++ H +R A+ + Sbjct: 289 HAGGHGSQYRDGYVFPSKICPDQPITSIESFWYAVR---QRAGLDDVRLHDLRHTFASHA 345 Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGAD 327 +G + G + Y D Sbjct: 346 VMSGVPLPVVARLLGHSKISMTMRYAHVGD 375 >gi|262198804|ref|YP_003270013.1| tyrosine recombinase XerD [Haliangium ochraceum DSM 14365] gi|262082151|gb|ACY18120.1| tyrosine recombinase XerD [Haliangium ochraceum DSM 14365] Length = 299 Score = 122 bits (306), Expect = 8e-26, Method: Composition-based stats. Identities = 42/283 (14%), Positives = 89/283 (31%), Gaps = 23/283 (8%) Query: 71 LKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGD---FDYRKITTKHIRSGVESR 126 + Y + +L+V++ + ++ R + + + + + Sbjct: 7 IDRACDLYFQHLKVERNLSVHTIEGYSRDLARLRRFLAERACIAVASVRPADLADYLLAL 66 Query: 127 KH--TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 S + ++R F++ V + Y+ +P + P+ ++ + + + Sbjct: 67 ADELGARSRARASAAIRGWFRFLVSERYLERDPAEHLATPRALRPLPVVIGEQAVTELLA 126 Query: 185 F----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPD 239 G + E L +GLR S+ + + + ++ K V L + Sbjct: 127 APPTTTPRGLRDGAMIETLYATGLRVSELVGLLMADVHLDPGYLRVLGKGRKQRLVPLGE 186 Query: 240 GFMKLLAMTPIGK----------ETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHG 288 + G F+ + M F K A G+ S H Sbjct: 187 MACARIEAYVSGARGSFLKNPKQPALFLTGHGKPMTRQGFWKLLKRYARGVGIAEISPHK 246 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 +R AT + GA + A G + + YT R RL Sbjct: 247 LRHSFATHLLEHGADLRAVQAMLGHADISTTQIYTH-VSRARL 288 >gi|315186395|gb|EFU20155.1| integrase family protein [Spirochaeta thermophila DSM 6578] Length = 312 Score = 122 bits (306), Expect = 8e-26, Method: Composition-based stats. Identities = 47/290 (16%), Positives = 94/290 (32%), Gaps = 30/290 (10%) Query: 74 LISEYRKS-AHWGSLAVNSRISFESYF---DQIIRKSGDFDYRKITT--KHIRSGVESRK 127 LI + +H L+ + S+ + + K G +H + + Sbjct: 16 LIDRFLAHLSHMRGLSEATVRSYRNDLVKVGAFLEKLGTDLVSATREDIRHCVAEYTLAR 75 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 PSS + L+S+R +++ R+ +P + K ++++ + Sbjct: 76 QAPSSINRMLSSLRSWYRFLRREGVRIDSPMEGISSVKAGKRLPSFLFEDEVDRLLDIEG 135 Query: 188 ---EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMK 243 + R E L +G R + + +Q + + K G + L G K Sbjct: 136 SDFASLRDRALLEVLYSTGCRVQELVSLTISGVQVSRGWCVVKGKGGKERLLFLGLGARK 195 Query: 244 LLAM------------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289 LA + F+N + + + +A + G+ K S H Sbjct: 196 ALAAYLPLRQALLERMGRREEGALFVNQKGSPLTTRGVAYIIERRAREKGLEKRISPHVF 255 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339 R AT GA + G ++ + YT L + +R+ Sbjct: 256 RHSFATHVLSRGADLRVVQEMLGHASLSTTQVYTH------LSLPALKRM 299 >gi|255262389|ref|ZP_05341731.1| tyrosine recombinase XerD [Thalassiobium sp. R2A62] gi|255104724|gb|EET47398.1| tyrosine recombinase XerD [Thalassiobium sp. R2A62] Length = 310 Score = 122 bits (306), Expect = 8e-26, Method: Composition-based stats. Identities = 47/289 (16%), Positives = 98/289 (33%), Gaps = 33/289 (11%) Query: 74 LISEYRKS-AHWGSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGV---ESRK 127 IS + ++ A A N+++++ + KS + T I + + +++ Sbjct: 8 WISSFLEAQAAELDAARNTQLAYARDLTDVADWLKSKGLHFSSATQGDIENYLIFCDAQG 67 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK---- 183 S+ + L++++ L+++A + + A NP + ++ P + + + E++ + Sbjct: 68 LAKSTRARRLSAVKQLYRFAFEESWRADNPAIQIKGPGKDKRLPKTLSVEEVDRLLEASR 127 Query: 184 ---SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPD 239 + + E L +G+R ++ V + + + K V L Sbjct: 128 TSAKSVDDRLRNTCLMELLYATGMRVTELVSLPVSATRGDPRMLLIRGKGDKERMVPLSP 187 Query: 240 GFMKLLA---------------MTPIGKETFFINNDK-QKMNATQFSIWFKAKATKAGV- 282 LA F + K + +F + K A GV Sbjct: 188 PARTALADWIKRWDALQDAAVKAGKPRARHLFPSRGKDGHLTRHRFYLMIKEFAVAGGVV 247 Query: 283 --NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 + H +R AT GA + G V E YT D Sbjct: 248 PSKVTPHTLRHAFATHLLANGADLRSIQTLLGHADVATTEIYTHVLDER 296 >gi|114566378|ref|YP_753532.1| hypothetical protein Swol_0842 [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114337313|gb|ABI68161.1| conserved hypothetical protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 290 Score = 122 bits (306), Expect = 8e-26, Method: Composition-based stats. Identities = 42/239 (17%), Positives = 81/239 (33%), Gaps = 18/239 (7%) Query: 104 RKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER 163 + G + + + ++ + + ++ + L ++R K+ R+ +A NP +V Sbjct: 35 EEVGVELISHNSVRKYLAQMQEKGLSRATMARKLAALRSFIKFLCRENILADNPIAAVST 94 Query: 164 PKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN 219 PK++ + R ++ + G + R E L SGLR S+ + Sbjct: 95 PKQERKLPRFLYTREIDLLMNAPDLSMAAGKRDRAILETLYASGLRVSELTNLDKPDIDF 154 Query: 220 NIFSIKT-QKTGTIITVELPDGFMKLL-----------AMTPIGKETFFINNDKQKMNAT 267 IK K G V L + L F+N + Q+++ Sbjct: 155 GEDYIKVLGKGGKERIVPLGSKAREALLLYLQQGRVYLEAKGQASPALFLNKNGQRLSTR 214 Query: 268 QFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 +N+ S H +R AT + GA + G + + YT Sbjct: 215 SIRNIINKYVETIAINQKVSPHTLRHSFATHLLNNGADLRSVQELLGHVKLSTTQIYTH 273 >gi|229110029|ref|ZP_04239606.1| DNA integration/recombination/invertion protein [Bacillus cereus Rock1-15] gi|228673382|gb|EEL28649.1| DNA integration/recombination/invertion protein [Bacillus cereus Rock1-15] Length = 369 Score = 122 bits (306), Expect = 8e-26, Method: Composition-based stats. Identities = 47/312 (15%), Positives = 109/312 (34%), Gaps = 38/312 (12%) Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVE 124 TLK ++ + + S+ ++ ++++ + +I G K+ HI+ + Sbjct: 60 PSKVTLKDYLNHWLEIKS-MSIEKSTFAGYKAFINQHVIPSIGMVALHKLNVMHIQKCYK 118 Query: 125 SRKHTPSSAIQFLTSMRVL---FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 + + L R+L AV+Q ++ NP E PK++ I+ WT+E++++ Sbjct: 119 AAIDKGIANNSILLMHRILKSALNLAVKQNIISRNPTDFAEIPKKEKTPIQTWTEEEVKK 178 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--------------NNIFSIKTQ 227 F + S+ S+ + + + +G+R + Q + +N + Sbjct: 179 FLA-HSQESRYHIGYLLAITTGMRLGEVLGLRWQDIDFEKHTVTINQTSGHDNKIKTTAK 237 Query: 228 KTGTIITVELPDGFMKLLAMTPI--------------GKETFFINNDKQKMNATQFSIWF 273 + T+ +P+ + L I ++ N + + F F Sbjct: 238 TNSSKRTIPVPNETIAALKKHKILINKEKLRFGSAYLDQDLINCNEFGRIIKRAHFRKSF 297 Query: 274 KAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRL 331 K G+ + H +R AT+ G + G + Y+ + Sbjct: 298 IRMTHKVGIKEIKFHDLRHTHATLLLKQGVNPKIISERLGHTDISMTLSIYSHVL--PNM 355 Query: 332 GIKNSRRISSVV 343 + + + Sbjct: 356 QEEAVKNFGKSI 367 >gi|331675279|ref|ZP_08376030.1| tyrosine recombinase XerC [Escherichia coli TA280] gi|331067565|gb|EGI38969.1| tyrosine recombinase XerC [Escherichia coli TA280] Length = 298 Score = 122 bits (306), Expect = 8e-26, Method: Composition-based stats. Identities = 43/270 (15%), Positives = 92/270 (34%), Gaps = 20/270 (7%) Query: 75 ISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITT------KHIRSGVESRK 127 + Y + L+ + ++++ + II + + + ++ + Sbjct: 8 VERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRKG 67 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186 +S L+++R F W V Q + NP V PK + +DM + Sbjct: 68 LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDIDI 127 Query: 187 --SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT--------VE 236 + R E + +GLR S+ ++HL + G+ V Sbjct: 128 NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAVA 187 Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSA 294 + ++ L + + F++ ++++A F A K G+N H +R A Sbjct: 188 WIEHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAAWGIKQGLNNHVHPHKLRHSFA 247 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTK 324 T ++ + G + + YT Sbjct: 248 THMLESSGDLRGVQELLGHANLSTTQIYTH 277 >gi|297242743|ref|ZP_06926681.1| site-specific recombinase XerD [Gardnerella vaginalis AMD] gi|296888954|gb|EFH27688.1| site-specific recombinase XerD [Gardnerella vaginalis AMD] Length = 322 Score = 122 bits (306), Expect = 8e-26, Method: Composition-based stats. Identities = 52/285 (18%), Positives = 104/285 (36%), Gaps = 34/285 (11%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIRSGV--ESRK 127 LI +Y L ++ ++ S + G + ++TT +RS + ESR Sbjct: 21 LIDDYIDYVRANKGLGERTQKAYASDILQCLAWCNRHGFNNISELTTDDLRSWMADESRS 80 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF----- 182 H SS + + ++R F W EY++ NP + PK K + + Sbjct: 81 HARSSLARKVVAVRGFFAWCQHVEYISSNPAEILMTPKIKNMLPSVLDEYQAESLMNNVD 140 Query: 183 ----------KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTG 230 K+ + G + E L +G+R + +Q + ++ + + Sbjct: 141 SKANVSSSCTKNQKAVGLRNAAILELLYATGIRVGELTSLNIQDINFSSHTIKVTGKGNK 200 Query: 231 TIITVELPDGFMKLLA-MTPIGKETF---------FINNDKQKMNATQFSIWFKAKATKA 280 + + L A ++ G+E F+ ++++ +A A Sbjct: 201 QRVVPFGVPAYKALSAWISKDGREILLRNSVEEAAFLGTRGKRIDQRLVRRIVHDEAKSA 260 Query: 281 GV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 V + S H +R +AT + GA E+ G +++ + YT Sbjct: 261 HVPDISPHALRHSAATHMLNGGADLREVQELLGHSSLNTTQRYTH 305 >gi|312797553|ref|YP_004030475.1| integrase/recombinase (XerC/CodV family) [Burkholderia rhizoxinica HKI 454] gi|312169328|emb|CBW76331.1| Integrase/recombinase (XerC/CodV family) [Burkholderia rhizoxinica HKI 454] Length = 312 Score = 122 bits (306), Expect = 8e-26, Method: Composition-based stats. Identities = 52/279 (18%), Positives = 96/279 (34%), Gaps = 30/279 (10%) Query: 75 ISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTP 130 I+ Y S AH L+ ++ + D + + +G + ++T +R V +P Sbjct: 8 IARYLDSLAHERRLSAHTLRGYAHELDMLRQLAGTRELTQLTPVDVRGAVSRAHSGGLSP 67 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQFKSFW 186 S L+ R ++W + + +NP V PKR + + +D M+ Sbjct: 68 RSIAHRLSVWRSFYRWLALHQPLTMNPVAGVRAPKRAKTLPKALSVDDAVTLMEASCIET 127 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN------NIFSIKT------QKTGTIIT 234 + + R E GLR ++ + + + T K G T Sbjct: 128 PDALRDRAMLELFYSCGLRLAELIGLDIAFVNTAQYRSVGWIDLGTADVTVLGKGGKRRT 187 Query: 235 VEL----PDGFMKLLAM----TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NK 284 V + D + LA+ F++ +M+A + A AGV + Sbjct: 188 VPIGSKALDALHRWLAVRDQLLKHDPHPLFLSARGMRMSAGVVRERVRRAALAAGVPSHV 247 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 H +R AT + + G +V + YT Sbjct: 248 HPHVLRHSFATHLLQSSGDLRAVQELLGHASVAATQVYT 286 >gi|254463512|ref|ZP_05076928.1| tyrosine recombinase XerD [Rhodobacterales bacterium HTCC2083] gi|206680101|gb|EDZ44588.1| tyrosine recombinase XerD [Rhodobacteraceae bacterium HTCC2083] Length = 314 Score = 122 bits (306), Expect = 8e-26, Method: Composition-based stats. Identities = 39/269 (14%), Positives = 87/269 (32%), Gaps = 32/269 (11%) Query: 88 AVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGV---ESRKHTPSSAIQFLTSMRV 142 A N+++++ + H+ + + +++ S+ + L++++ Sbjct: 25 ATNTQLAYARDLKDFAEYLSGRKLSFENAARDHVEAYLIFCDAQGLAKSTRARRLSAIKQ 84 Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE---GSQPRLA---- 195 L+++ + + + NP + + P + + ++ + RL Sbjct: 85 LYRFGFEEGWRSDNPAIQIAGPGKDKRLPKTLNMGEVDGLLAAARVVGRSPTDRLRNTCL 144 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVEL--------------PDG 240 E L +G+R S+ + + N + K V L D Sbjct: 145 MELLYATGMRVSELVSLPISAARGNPSMLLIRGKGDKERMVPLSPPARDALTEWLETLDD 204 Query: 241 FMKLLAMTPIGKETFFINNDKQ--KMNATQFSIWFKAKATKAGV---NKSAHGVRKFSAT 295 + + F + + + +F I K + AGV + H +R AT Sbjct: 205 LQEAGRLKGKAVSRFLFPSRGKEGHLTRHRFYILIKELSVHAGVPPAKVTPHTLRHAFAT 264 Query: 296 ISADAGATAHELMATYGWKTVDQAETYTK 324 + GA + G V E YT Sbjct: 265 HLLENGADLRSIQTLLGHADVATTEIYTH 293 >gi|227495411|ref|ZP_03925727.1| possible integrase/recombinase [Actinomyces coleocanis DSM 15436] gi|226830958|gb|EEH63341.1| possible integrase/recombinase [Actinomyces coleocanis DSM 15436] Length = 317 Score = 122 bits (306), Expect = 9e-26, Method: Composition-based stats. Identities = 46/274 (16%), Positives = 89/274 (32%), Gaps = 34/274 (12%) Query: 85 GSLAVNSRISFESYFDQ--IIRKSGDFDYRKITT----KHIRSGVESRKHTPS----SAI 134 + ++ + ++ + R D ++ T H+ P S Sbjct: 25 KGASAHTVAGYRRDLERFLVERGIADTPLAQVDTVAIDAHLTQLSLGFAGKPGLSAASIA 84 Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-----SEG 189 + S+R LF++AV ++ ++ +P V++ K + + E++ G Sbjct: 85 RARASIRALFRYAVSEDILSADPAAEVQQKKLGKHLPKAISLEEIAAMLEVAGQRPGPVG 144 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKT-QKTGTIITVELPDGFMKLL- 245 + E L +G R ++ L +K K V L ++ L Sbjct: 145 LRDVALIELLYGTGARITEVMNLSPDDLYLAGEFPHVKLFGKGRKERLVPLGSFAVQALE 204 Query: 246 -------------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVR 290 A T + F+N ++ A AG S H +R Sbjct: 205 DYLLLGRPLLLGKAKTRVAGHPLFLNKRGLSLSRQSAWEIISQTAVAAGCVSEVSPHSLR 264 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK 324 AT + GA+ ++ G +V + YTK Sbjct: 265 HSFATHLLEGGASIRDVQELLGHASVTTTQIYTK 298 >gi|325289988|ref|YP_004266169.1| tyrosine recombinase XerD subunit [Syntrophobotulus glycolicus DSM 8271] gi|324965389|gb|ADY56168.1| tyrosine recombinase XerD subunit [Syntrophobotulus glycolicus DSM 8271] Length = 315 Score = 122 bits (306), Expect = 9e-26, Method: Composition-based stats. Identities = 41/280 (14%), Positives = 87/280 (31%), Gaps = 34/280 (12%) Query: 85 GSLAVNSRISFESYFDQIIRKSGD-----FDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139 L+ N+ S+ +++ + F + + V + + S ++ + Sbjct: 17 RGLSGNTCQSYRRDLKKLLIYLEENQNNLFQCQPVDLFSFLYSVNEQGISARSIARYTAA 76 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS--------- 190 ++ F + + +P + PK + ++ + + + Sbjct: 77 LKGFFSYLSDEGKRTDDPTELIVVPKLEQPLPHVLSESAVNSLINHRDDKESQAGMLLEI 136 Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDG--------- 240 + E L SGLR S+ + + + ++ + G V L + Sbjct: 137 RDTAILEVLYGSGLRVSELITLSLNQISLEVGYVRCRGKGNKERIVPLSEPCLLALQKYL 196 Query: 241 -------FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK--AGVNKSAHGVRK 291 K T + F+N ++ K +A K AG H +R Sbjct: 197 LEARNHLLRKNRKPTTAESNSLFLNARGGRLTRQGIWTILKNRAVKNKAGAKIYPHLMRH 256 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIR 330 AT D GA + G + + YT +R+R Sbjct: 257 CFATHLLDHGADLRSVQEMLGHADISTTQIYTHLTKNRLR 296 >gi|229190701|ref|ZP_04317697.1| DNA integration/recombination/invertion protein [Bacillus cereus ATCC 10876] gi|228592834|gb|EEK50657.1| DNA integration/recombination/invertion protein [Bacillus cereus ATCC 10876] Length = 369 Score = 122 bits (306), Expect = 9e-26, Method: Composition-based stats. Identities = 47/312 (15%), Positives = 109/312 (34%), Gaps = 38/312 (12%) Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVE 124 TLK ++ + + S+ ++ + ++ + +I G K+ HI+ + Sbjct: 60 PSKVTLKDYLNHWLEIKS-ISIEKSTFAGYRAFINQHVIPSIGMVALHKLNVIHIQKCYK 118 Query: 125 SRKHTPSSAIQFLTSMRVL---FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 + + L R+L AV+Q ++ NP E PK++ I+ WT+E++++ Sbjct: 119 TAIDKGIANNSILLMHRILKSALNLAVKQNIISRNPADFAEIPKKEKPPIQTWTEEEVKK 178 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--------------NNIFSIKTQ 227 F + S+ S+ + + + +G+R + Q + +N + Sbjct: 179 FLA-HSQESRYHIGYLLAITTGMRLGEVLGLRWQDIDFEKHTVTINQTSGHDNKIKKTAK 237 Query: 228 KTGTIITVELPDGFMKLLAMTPI--------------GKETFFINNDKQKMNATQFSIWF 273 + T+ +P+ ++ L I ++ N + + F F Sbjct: 238 TNSSKRTIPVPNETIEALKKHKILINKEKLRFGSAYLDQDLINCNEFGRIIKRAHFRKSF 297 Query: 274 KAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRL 331 K G+ + H +R AT+ G + G + Y+ + Sbjct: 298 IRMTHKVGIKEIKFHDLRHTHATLLLKQGVNPKIISERLGHTDISMTLSVYSHVL--PNM 355 Query: 332 GIKNSRRISSVV 343 + + + Sbjct: 356 QEEAVKNFGKSI 367 >gi|118581964|ref|YP_903214.1| phage integrase family protein [Pelobacter propionicus DSM 2379] gi|118504674|gb|ABL01157.1| phage integrase family protein [Pelobacter propionicus DSM 2379] Length = 402 Score = 122 bits (306), Expect = 9e-26, Method: Composition-based stats. Identities = 52/314 (16%), Positives = 102/314 (32%), Gaps = 23/314 (7%) Query: 46 AYMSALTGSTPKREYINSPRKKPTTLKWLISE-YRKSAHWGSLA-VNSRISFESYFDQII 103 A AL + T + ++ Y A + + E + I Sbjct: 87 AEHKALLARDKDPAAERGKVRADLTFEEFSTQHYLPHAKAHKQTWDDDKNQIERRLNPI- 145 Query: 104 RKSGDFDYRKITTKHIRSGVESRKH--TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV 161 G + IT + + K T +A L +++ + AV+ + NP Sbjct: 146 --LGKLRLQAITPRDVAMVHSKEKERTTACTANHLLATLKRMLNLAVKWGLLEKNPAGGQ 203 Query: 162 ERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHL-- 217 E+ K R +KE++ +F + A LLY+G R + +++ Sbjct: 204 EKFKEGPLRERYLSKEELPKFLKALEDQDDLLSVAALRMLLYTGCRREEIMSLRWENVRL 263 Query: 218 QNNIFSIKTQKTGTIITVELPDGFMKLLAMT---------PIGKETFFINNDKQKMNA-T 267 + K G TV L +++ G E F + K Sbjct: 264 DEERIFLPKTKNGRSRTVHLNARAKEVIQDLQARKDQEDRTRGSEYVFPSRQGTKKGYIY 323 Query: 268 QFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-G 325 F+ AG++ H +R A+++ +GA + + G + + + Y Sbjct: 324 DLRKPFEKACLNAGIDNFRIHDLRHTFASMAVSSGADLYAVQRLLGHQDIAMTQRYAHLN 383 Query: 326 ADRIRLGIKNSRRI 339 AD ++ + + Sbjct: 384 ADDLKKATEGVSEM 397 >gi|315618491|gb|EFU99077.1| tyrosine recombinase XerC [Escherichia coli 3431] Length = 282 Score = 122 bits (306), Expect = 9e-26, Method: Composition-based stats. Identities = 41/259 (15%), Positives = 88/259 (33%), Gaps = 19/259 (7%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITT------KHIRSGVESRKHTPSSAIQFLT 138 L+ + ++++ + II + + + ++ + +S L+ Sbjct: 3 RQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRKGLGAASLALRLS 62 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQPRLA 195 ++R F W V Q + NP V PK + +DM + + R Sbjct: 63 ALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDIDINDPLAVRDRAM 122 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT--------VELPDGFMKLLAM 247 E + +GLR S+ ++HL + G+ V + ++ L + Sbjct: 123 LEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAVAWIEHWLDLRDL 182 Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAH 305 + F++ ++++A F K G+N H +R AT ++ Sbjct: 183 FGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRHSFATHMLESSGDLR 242 Query: 306 ELMATYGWKTVDQAETYTK 324 + G + + YT Sbjct: 243 GVQELLGHANLSTTQIYTH 261 >gi|167764388|ref|ZP_02436513.1| hypothetical protein BACSTE_02776 [Bacteroides stercoris ATCC 43183] gi|167697793|gb|EDS14372.1| hypothetical protein BACSTE_02776 [Bacteroides stercoris ATCC 43183] Length = 294 Score = 122 bits (306), Expect = 9e-26, Method: Composition-based stats. Identities = 42/263 (15%), Positives = 96/263 (36%), Gaps = 23/263 (8%) Query: 85 GSLAVNSRISFESYFDQI----IRKSGDFDYRKITTKHIRSGV---ESRKHTPSSAIQFL 137 + + + + + ++ + GD + IR + + + P++ + L Sbjct: 15 RNYSEGTVRYYRTDILELQKFGEKLLGDLAPSDVGVDLIREWIVSLMDKGYAPNTVNRKL 74 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS-----EGSQP 192 +S+R +K+ +++ VA +P V PK+K + ++ + EG + Sbjct: 75 SSVRTYYKYLLKKGLVAADPLRRVTGPKKKKPLPVFLREGEVDRLLDDVDFGERFEGYRD 134 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLA----- 246 RL E +G+R S+ + + + IK T K + + + Sbjct: 135 RLIIEMFYTTGMRLSELIGLDDKDVDFSASLIKVTGKRNKQRLIPFDKELGRSMQEYVNV 194 Query: 247 ---MTPIGKETFFINNDKQKMNATQFSIWFKA--KATKAGVNKSAHGVRKFSATISADAG 301 P+ + FF+ + +++ + + +S H +R AT + G Sbjct: 195 RNQALPVRSDAFFVRKNGERLGRGIVAYIVRRNLSKVVTVKKRSPHVLRHTFATAMLNNG 254 Query: 302 ATAHELMATYGWKTVDQAETYTK 324 A + G +++ E YT Sbjct: 255 ADLSSIKELLGHESLATTEVYTH 277 >gi|330836616|ref|YP_004411257.1| Tyrosine recombinase xerC [Spirochaeta coccoides DSM 17374] gi|329748519|gb|AEC01875.1| Tyrosine recombinase xerC [Spirochaeta coccoides DSM 17374] Length = 309 Score = 122 bits (306), Expect = 9e-26, Method: Composition-based stats. Identities = 46/277 (16%), Positives = 89/277 (32%), Gaps = 23/277 (8%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQII-----RKSGDFDYRKITTKHIRSGVE 124 + L+ EYR+ L+ + + + + R G + + T Sbjct: 6 ISQLLEEYREHLLLERRLSPATVNVYVPVVREYVSFLETRGIGAEEAQADTISGYFIHKG 65 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 + + ++++R ++ + + NP ++ PK R + + Sbjct: 66 QAGLGTRTLARNMSALRSFHRFLLLNDIRNDNPFELLDSPKLPRTLPRTMDYDSVDDILH 125 Query: 185 FWSE-----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELP 238 + R FE + GLR S+ ++ + T K V + Sbjct: 126 EMELDDAIYARRDRAIFEVIYSCGLRVSELASLRIEDYSPESRLLRITGKRNKQRIVPVG 185 Query: 239 DGFMKLL---------AMTPIGKET--FFINNDKQKMNATQFSIWFKAKATKAGVNKSAH 287 D +L+ A P G+ + F+N Q ++ FK + GV H Sbjct: 186 DVAAELIDEYIISVRPAFIPKGRSSRFLFLNRYGQSLSRVMIWKLFKKYCMRIGVEAKVH 245 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 +R AT AGA + G + + YT Sbjct: 246 TLRHSYATHLLKAGADLRSVQELLGHSDIRTTQIYTH 282 >gi|242237692|ref|YP_002985873.1| site-specific tyrosine recombinase XerC [Dickeya dadantii Ech703] gi|242129749|gb|ACS84051.1| tyrosine recombinase XerC [Dickeya dadantii Ech703] Length = 302 Score = 122 bits (306), Expect = 9e-26, Method: Composition-based stats. Identities = 41/260 (15%), Positives = 91/260 (35%), Gaps = 21/260 (8%) Query: 85 GSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSGVESRKH---TPSSAIQFLT 138 L+ + S++ I + +SG D+R++ +RS K + +S Q L+ Sbjct: 22 RRLSPLTLRSYQHQLQVIASTLEESGISDWRRLDAAGVRSLAARGKRDGLSAASLAQRLS 81 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQPRLA 195 ++R W V + ++ NP V PK + ++ + + + R Sbjct: 82 ALRSFLDWLVSRGELSANPARGVSAPKAGRHLPKNMDVDETDRLLAIDLNDPLAVRDRAM 141 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMT----- 248 E + +GLR ++ +HL + + K + + + L Sbjct: 142 LEVMYGAGLRLAELVGLDCRHLDLADGEIWV-LGKGSKERRLPIGATAVAWLRRWLDVRE 200 Query: 249 --PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATA 304 + F+++ ++++ F K G+ + H +R AT ++ Sbjct: 201 IYAPDDDAVFVSSRGKRISMRNVQKRFAEWGVKQGISSHVHPHKLRHSFATHMLESSGDL 260 Query: 305 HELMATYGWKTVDQAETYTK 324 + G + + YT Sbjct: 261 RAVQELLGHANLSTTQIYTH 280 >gi|227114723|ref|ZP_03828379.1| site-specific tyrosine recombinase XerC [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 311 Score = 122 bits (306), Expect = 9e-26, Method: Composition-based stats. Identities = 48/285 (16%), Positives = 99/285 (34%), Gaps = 22/285 (7%) Query: 62 NSPRKKPTT--LKWLISEYRKSAH-WGSLAVNSRISFESYFDQ---IIRKSGDFDYRKIT 115 +P + P++ L+ + + + L+ ++ S+ I+ +G D+R + Sbjct: 5 PAPSETPSSSPLQADVDAFLRYLKVERQLSPLTQTSYLRQLSAVITILSAAGVADWRNLD 64 Query: 116 TKHIRSGVESRKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172 +RS V K SS L+++R W V + + NP V P+ + Sbjct: 65 ASGVRSVVSRSKRDGLHSSSLALRLSALRSFLDWMVSRGVLVANPAKGVSAPRAGRPLPK 124 Query: 173 PWTKEDMQQFKSFW---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229 ++ + + R E + +GLR ++ QH+ + Sbjct: 125 NMDVDETNRLLEIDLDDPLAVRDRTMLEVMYGAGLRLAELVGMDYQHIDLASGEVWVMGK 184 Query: 230 GTI--------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281 G+ V + +M L + + FI+N ++++ F K G Sbjct: 185 GSKERKLPIGKTAVTWLERWMALRELFGPQDDAVFISNQGRRISMRNVQKRFAEWGIKQG 244 Query: 282 VN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 +N H +R AT ++ + G + + YT Sbjct: 245 INSHVHPHKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTH 289 >gi|187935362|ref|YP_001884797.1| phage integrase family protein [Clostridium botulinum B str. Eklund 17B] gi|187723515|gb|ACD24736.1| phage integrase family protein [Clostridium botulinum B str. Eklund 17B] Length = 385 Score = 122 bits (306), Expect = 9e-26, Method: Composition-based stats. Identities = 54/379 (14%), Positives = 126/379 (33%), Gaps = 52/379 (13%) Query: 13 KERTRHGKIIYYF--RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70 R R K YYF K G+R ++ +T A + + + + Sbjct: 4 SVRKRGNKWYYYFDVAKSDGKRKKIERAGGNTKKEALEALRKALSEYDNVGTIITESNIS 63 Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKHT 129 + + + ++++S++ + + G + +KIT+ ++ + + Sbjct: 64 VSDYFDYWFNEYVLINCKYSTQVSYKRLIKNHLKPSLGIYQLKKITSSRLQELINLKYRN 123 Query: 130 PSSAIQF---LTSMRVLFKWAV-RQEYVAINPCLSVERPKRKTEGI------RPWTKEDM 179 S + FK+AV ++ NP V+ PK T+ I + T ED Sbjct: 124 GFSKNYLGNLYGVLSGAFKYAVYPSNFIKENPMTFVKMPKYNTKLINNPDDLKIITLEDY 183 Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK----------- 228 + GS + + +GLR ++ + +++ +K Sbjct: 184 NNILKRFPYGSNMYIPLQISFNTGLRAAEVMSLTWDCIDFENQTLRVEKILYRNEFKKWV 243 Query: 229 ------TGTIITVELPDGFMKLLAMTPIGK----------------ETFFINNDKQKMNA 266 + T+++ + + LL + + + + + + Sbjct: 244 FGSPKTHSSYRTIKIGNTLLSLLKKFHKDQKENKLRYGPFYVKHDYDFVCLKENGELLTT 303 Query: 267 TQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK- 324 K + G++ H +R AT+ +AGA ++ G + + Y+ Sbjct: 304 DSLKYLSKVVNYELGIDFKFHSLRHTHATMLLEAGANIKDIQQRLGHSKLATTMDVYSHV 363 Query: 325 ----GADRIRLGIKNSRRI 339 D +RL + +++ Sbjct: 364 TKKMSQDSVRLFEEAIKKL 382 >gi|226227035|ref|YP_002761141.1| tyrosine recombinase XerD [Gemmatimonas aurantiaca T-27] gi|226090226|dbj|BAH38671.1| tyrosine recombinase XerD [Gemmatimonas aurantiaca T-27] Length = 312 Score = 122 bits (306), Expect = 9e-26, Method: Composition-based stats. Identities = 46/268 (17%), Positives = 90/268 (33%), Gaps = 26/268 (9%) Query: 88 AVNSRISFESYFDQ---IIRKSGDFDYRKITTKHIRSGVESRKH---TPSSAIQFLTSMR 141 + + ++ + +R G + IT +R V K SS + ++++R Sbjct: 36 SPRTIEAYRRDVIRCAAQMRAMGITQAKDITPAALREFVYHLKDLGLAGSSIRRNISALR 95 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAFE 197 F+ V + V +P ++ P+R + +++ + + + R E Sbjct: 96 TWFRIMVAEGLVTTDPTERLDSPQRWRTLPEVLSVDEVTRLLAAPGLDERLAFRDRAMLE 155 Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVEL-----------PDGFMKLL 245 +GLR S+ V+ + ++ K V + +L Sbjct: 156 LAYGAGLRVSEWIGMSVKDVMLEDSLVRVLGKGNKERLVPIGRSAIGAVAVYLRELRPVL 215 Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGAT 303 GK F+N ++ + AG+ K S H +R AT + GA Sbjct: 216 ERG-GGKGILFLNGRGAPLSRMGAWKLVRKYVGMAGIEKPVSPHTLRHSFATHLLEGGAD 274 Query: 304 AHELMATYGWKTVDQAETYTKGADRIRL 331 + G + + YT DR L Sbjct: 275 LRAVQEMLGHADIATTQIYTH-VDREYL 301 >gi|54298066|ref|YP_124435.1| hypothetical protein lpp2123 [Legionella pneumophila str. Paris] gi|53751851|emb|CAH13275.1| hypothetical protein lpp2123 [Legionella pneumophila str. Paris] Length = 353 Score = 122 bits (306), Expect = 9e-26, Method: Composition-based stats. Identities = 59/340 (17%), Positives = 116/340 (34%), Gaps = 36/340 (10%) Query: 11 VTKERTRHGKIIYYFRKGHGRRIRLPY-PHESTFIPAYMSALTGSTPKREYINSPR---- 65 + K ++ GKI Y +IRL P + A I R Sbjct: 4 IEKRTSKEGKISYRV------KIRLKGFPTQHATFERLTDARKWVQQTESAIREGRHFKT 57 Query: 66 --KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123 K TL +I Y K + + + + + G + +++ I Sbjct: 58 TEAKRRTLGEMIDRYIK--DVIQEKPKNLKNRVLHLNWWKEELGQYSLAELSPAMIAEKR 115 Query: 124 ESR---------KHTPSSAIQFLTSMRVLFKWAV-RQEYVAINPCLSVERPKRKTEGIRP 173 + K +PS+ ++++ S+ F AV ++ +P V +PK +R Sbjct: 116 DKLSAGITSRNLKRSPSTVVRYMASLSHAFTIAVKEWGWLEDSPMRRVTKPKEPRGRVRF 175 Query: 174 WTKEDMQQFKSFWSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKT 229 + ++ + S + L A L +G R + +++ +I ++ K Sbjct: 176 LSDDERARLLSECKKSDSQYLYLAVVLALSTGGRKMEILGLSWKNVDFNRSIITLHETKN 235 Query: 230 GTIITVEL----PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NK 284 G + L D + + + + F D + F+ +AG+ + Sbjct: 236 GERRVLPLTGHALDLMKQHAKVRHVNSDLVFPGKDFK--TPIDLRTPFETALKRAGITDF 293 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R A+ A GA+ E+ G KT+ + Y Sbjct: 294 RWHDLRHSCASYLAMNGASLAEIAEILGHKTLQMVKRYAH 333 >gi|157825624|ref|YP_001493344.1| site-specific tyrosine recombinase XerD [Rickettsia akari str. Hartford] gi|157799582|gb|ABV74836.1| site-specific tyrosine recombinase XerD [Rickettsia akari str. Hartford] Length = 306 Score = 122 bits (306), Expect = 9e-26, Method: Composition-based stats. Identities = 52/287 (18%), Positives = 104/287 (36%), Gaps = 39/287 (13%) Query: 75 ISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDYRK--ITTKHIRSGVESRKHT-- 129 IS++ + +L+ NS +S++ ITT ++R +E + Sbjct: 4 ISQFLEMLLAERALSKNSILSYKRDLCDFQNYLAKQRLSALNITTANVRDWIEYLANNDL 63 Query: 130 -PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-- 186 S + +++++ +++ + + + NP L+V+ PK + + + + ++ + Sbjct: 64 QARSINRKISTVKNYYEFLISENHTTFNPVLNVDLPKYQNKLPEILSIDQIKSLLEYCSQ 123 Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN---------IFSIKTQKTGTIIT 234 EG + L SGLR S+ + + N IFS+ + + Sbjct: 124 DNSPEGIRLNAMIHLLYASGLRVSELVSLKLSDILTNKTSKGEVRKIFSVLGKGNKERVI 183 Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQK--------------MNATQFSIWFKAKATKA 280 V + + I F+N K K M F+I K+ A A Sbjct: 184 VINEQAVISIAKYLAIRD--IFVNKAKPKNLIYLFPSSALTGYMTRQNFAILLKSAALYA 241 Query: 281 GVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 +N S H +R A+ + GA + G + + YT Sbjct: 242 NLNPEHVSPHILRHSFASHLLEGGADLRVIQDLLGHSDISTTQIYTH 288 >gi|291484165|dbj|BAI85240.1| site-specific tyrosine recombinase XerC [Bacillus subtilis subsp. natto BEST195] Length = 304 Score = 122 bits (305), Expect = 9e-26, Method: Composition-based stats. Identities = 38/248 (15%), Positives = 89/248 (35%), Gaps = 22/248 (8%) Query: 99 FDQIIRKSGDFDYRKITTKHIRSGV---ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAI 155 F+ +R G + + + R + + + + + ++++R +K+ +R++ + Sbjct: 36 FETFLRVQGINGFEEAAYQDTRIFLTEAYEKGLSRRTISKKISALRSFYKFLMREKLIEE 95 Query: 156 NPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAFEFLLYSGLRCSDSCR 211 NP V PK++ + ++++++ G + + E L +G+R S+ C Sbjct: 96 NPFQLVHLPKQEKRIPKFLYQKELEELFEVSDISQPAGMRDQALLELLYATGMRVSECCS 155 Query: 212 AGVQHLQNNIFSIKTQKTGTI-------------ITVELPDGFMKLLAMTPIGKETFFIN 258 + + + ++ G + V + G LL + F+N Sbjct: 156 ITINDVDLFMDTVLVHGKGKKQRYIPFGSYAREALKVYMNSGRQCLLMKAKEPHDLLFVN 215 Query: 259 NDKQKMNATQFSIWFKAKATKAG--VNKSAHGVRKFSATISADAGATAHELMATYGWKTV 316 + A KA ++ H +R AT + GA + G + Sbjct: 216 QRGGPLTARGIRHILSGLVQKASSTLHIHPHMLRHTFATHLLNEGADLRSVQELLGHSNL 275 Query: 317 DQAETYTK 324 + YT Sbjct: 276 SSTQIYTH 283 >gi|16078677|ref|NP_389496.1| site-specific tyrosine recombinase XerC [Bacillus subtilis subsp. subtilis str. 168] gi|221309489|ref|ZP_03591336.1| site-specific tyrosine recombinase XerC [Bacillus subtilis subsp. subtilis str. 168] gi|221313814|ref|ZP_03595619.1| site-specific tyrosine recombinase XerC [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221318738|ref|ZP_03600032.1| site-specific tyrosine recombinase XerC [Bacillus subtilis subsp. subtilis str. JH642] gi|221323009|ref|ZP_03604303.1| site-specific tyrosine recombinase XerC [Bacillus subtilis subsp. subtilis str. SMY] gi|321315380|ref|YP_004207667.1| site-specific tyrosine recombinase XerC [Bacillus subtilis BSn5] gi|729174|sp|P39776|XERC_BACSU RecName: Full=Tyrosine recombinase xerC gi|535348|gb|AAB03369.1| CodV [Bacillus subtilis subsp. subtilis str. JH642] gi|2633986|emb|CAB13487.1| site-specific tyrosine recombinase for chromosome partitioning [Bacillus subtilis subsp. subtilis str. 168] gi|320021654|gb|ADV96640.1| site-specific tyrosine recombinase XerC [Bacillus subtilis BSn5] Length = 304 Score = 122 bits (305), Expect = 9e-26, Method: Composition-based stats. Identities = 38/248 (15%), Positives = 89/248 (35%), Gaps = 22/248 (8%) Query: 99 FDQIIRKSGDFDYRKITTKHIRSGV---ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAI 155 F+ +R G + + + R + + + + + ++++R +K+ +R++ + Sbjct: 36 FETFLRVQGINGFEEAAYQDTRIFLTEAYEKGLSRRTISKKISALRSFYKFLMREKLIEE 95 Query: 156 NPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAFEFLLYSGLRCSDSCR 211 NP V PK++ + ++++++ G + + E L +G+R S+ C Sbjct: 96 NPFQLVHLPKQEKRIPKFLYQKELEELFEVSDISQPAGMRDQALLELLYATGMRVSECCS 155 Query: 212 AGVQHLQNNIFSIKTQKTGTI-------------ITVELPDGFMKLLAMTPIGKETFFIN 258 + + + ++ G + V + G LL + F+N Sbjct: 156 ITINDVDLFMDTVLVHGKGKKQRYIPFGSYAREALKVYMNSGRQCLLMKAKEPHDLLFVN 215 Query: 259 NDKQKMNATQFSIWFKAKATKAG--VNKSAHGVRKFSATISADAGATAHELMATYGWKTV 316 + A KA ++ H +R AT + GA + G + Sbjct: 216 QRGGPLTARGIRHILSGLVQKASSTLHIHPHMLRHTFATHLLNEGADLRSVQELLGHSNL 275 Query: 317 DQAETYTK 324 + YT Sbjct: 276 SSTQIYTH 283 >gi|258508408|ref|YP_003171159.1| tyrosine recombinase XerD [Lactobacillus rhamnosus GG] gi|257148335|emb|CAR87308.1| Tyrosine recombinase xerD [Lactobacillus rhamnosus GG] Length = 299 Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats. Identities = 40/235 (17%), Positives = 81/235 (34%), Gaps = 23/235 (9%) Query: 111 YRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170 + + + + + +S + ++S+R +++ VR + V NP VE K+ Sbjct: 49 VDDLDVQTYLTDLNKQALARTSIARKISSLRSFYRYLVRIDVVKRNPFELVELKKQHHHL 108 Query: 171 IRPWTKEDMQQFKS----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIK 225 + + + ++Q+ + R E L +G+R S+ + + N + Sbjct: 109 PQFFYEAEIQELFKTVEGKTPLDQRNRALLEVLYGTGIRVSECANLTLNQVDFNTGLLLI 168 Query: 226 TQKTGTIITVE------------LPDGFMKLLAMTPIGKETFFINNDKQKMNATQ----F 269 K V L DG L+ + F+N + + A Sbjct: 169 HGKGNKDRYVPFGRYAQRALQTYLKDGRQTLMNKRDVQHRFVFVNQYGRPITARGIEYIL 228 Query: 270 SIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 K + A ++ H +R AT D GA + G ++ + YT Sbjct: 229 DQLIKQTSLIANIH--PHMLRHSFATHMLDHGADLRTVQELLGHASLSTTQIYTH 281 >gi|238651031|ref|YP_002916888.1| site-specific tyrosine recombinase XerD [Rickettsia peacockii str. Rustic] gi|238625129|gb|ACR47835.1| site-specific tyrosine recombinase XerD [Rickettsia peacockii str. Rustic] Length = 306 Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats. Identities = 48/276 (17%), Positives = 99/276 (35%), Gaps = 38/276 (13%) Query: 85 GSLAVNSRISFESYF----DQIIR-KSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139 +L+ NS +S++ + + + K + + + + S S + +++ Sbjct: 15 RALSKNSILSYKRDLFDFQNYLAKHKLSELNITTENIRDWIEYLASDDLQARSINRKIST 74 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-----SEGSQPRL 194 ++ +++ + + + A NP L+V+ PK + + + ++ EG + Sbjct: 75 IKSYYEFLISENHTAFNPVLNVDLPKYQNKLPEILSIAQIKSLLEHCSQDNSPEGIRLNA 134 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNN---------IFSIKTQKTGTIITVELPDGFMKLL 245 L SGLR S+ + + N IFS+ + + V + + Sbjct: 135 MIHLLYASGLRVSELVSLKLADILTNKTSTGEVRKIFSVLGKGNKERVIVINEQAVISIA 194 Query: 246 AMTPIGKETFFINNDKQK--------------MNATQFSIWFKAKATKAGVNK---SAHG 288 I F+N K + M F+I K+ A AG+N S H Sbjct: 195 KYLAIRG--VFVNKAKPRNLIYLFPSSALAGYMTRQNFAILLKSAALYAGLNHEYISPHI 252 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 +R A+ + GA + G + + YT Sbjct: 253 LRHSFASHLLEGGADLRVIQELLGHADISTTQIYTH 288 >gi|221639249|ref|YP_002525511.1| Phage integrase family protein [Rhodobacter sphaeroides KD131] gi|221160030|gb|ACM01010.1| Phage integrase family protein [Rhodobacter sphaeroides KD131] Length = 311 Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats. Identities = 55/287 (19%), Positives = 103/287 (35%), Gaps = 33/287 (11%) Query: 74 LISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGV---ESRK 127 IS + ++ A A N+R+ + G D+ T + + + E++ Sbjct: 9 WISAFLEAQAAELDAARNTRLGYGRDLKDYAAWLGRRSEDFLTATRDTVEAYLTFCEAQG 68 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF-KSFW 186 + ++ + L+S+R L+++A + + A NP + + P R + E++ + ++ Sbjct: 69 LSSATRARRLSSIRQLYRFAHEEGWRADNPAIRISGPGRSKRLPKTLEIEEVDRLLEAAR 128 Query: 187 SEGSQP------RLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPD 239 +G + R E L +G+R S+ V + N + K G V L Sbjct: 129 DKGRRAQDQIRNRCLLELLYATGMRVSEMVGLPVAAARGNPRMILVRGKGGKERMVPLSP 188 Query: 240 GFMKLLA----------------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283 + LA P + F + + F + K A AGV+ Sbjct: 189 PAREALADWLRARDAAEAQGQKAGRPASRFLFPGSGAAGHLTREYFYVLVKQIAVLAGVD 248 Query: 284 ---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 + H +R AT GA + G + E YT D Sbjct: 249 PAKVTPHTLRHAFATHLLAGGADLRVIQTLLGHADLSTTEIYTHVLD 295 >gi|296454370|ref|YP_003661513.1| tyrosine recombinase XerD [Bifidobacterium longum subsp. longum JDM301] gi|296183801|gb|ADH00683.1| tyrosine recombinase XerD [Bifidobacterium longum subsp. longum JDM301] Length = 308 Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats. Identities = 43/271 (15%), Positives = 91/271 (33%), Gaps = 31/271 (11%) Query: 85 GSLAVNSRISFE----SYFDQIIRKSGDFD--YRKITTKHIRSGVESRKHTPSSAIQFLT 138 LA + ++E Y D + + K + + ++ + S + L Sbjct: 20 RGLATATVTAYESDIAKYIDWLETRGIHEPDAITKQDVEDYIAALDQAGESARSKARRLA 79 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG-------SQ 191 S+ ++A+ Q V + +V+ PK + T +++ + + G + Sbjct: 80 SIHEFHRFALGQHAVTADVSAAVKAPKGASTLPDVLTVDEVTRLLDTAAVGGSTDPVVLR 139 Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPD----------- 239 + EF+ +G R S++ A + + + + K V L Sbjct: 140 DKALLEFMYATGCRVSEATGANLDDIDLDEHIARLMGKGSKQRLVPLGSYACRAITAYLN 199 Query: 240 ----GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFS 293 + + + F+N ++++ KA +AG+ K H +R Sbjct: 200 AGRGELERRSSAKIPERRALFLNKRGKRISRQSVWEIVKATGERAGITKPLHPHTLRHSF 259 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTK 324 AT GA + G +V + YT Sbjct: 260 ATHLIQGGADVRTVQELLGHASVTTTQIYTH 290 >gi|28199084|ref|NP_779398.1| phage-related integrase [Xylella fastidiosa Temecula1] gi|182681811|ref|YP_001829971.1| integrase family protein [Xylella fastidiosa M23] gi|28057182|gb|AAO29047.1| phage-related integrase [Xylella fastidiosa Temecula1] gi|182631921|gb|ACB92697.1| integrase family protein [Xylella fastidiosa M23] Length = 339 Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats. Identities = 63/333 (18%), Positives = 114/333 (34%), Gaps = 28/333 (8%) Query: 7 LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66 +P F + + + G + YY+ G R P Y A+ + E+ Sbjct: 11 IPRFRVRPQ-KSGVVYYYYDHGGKPRKETPLG------RDYGLAI-KRWAELEHAQITPA 62 Query: 67 KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVE 124 T + + YR + A N++ Y + +++ D + I +IR ++ Sbjct: 63 IAVTFRHVAERYRAEVI-PTKAYNTQRMHHVYLNYLLQFFDDPPAPFESIKPVNIRQYLD 121 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVA-INPCLSVERPKRKTEGIRPWTKEDMQQFK 183 R SA + + L+ WA + NPC + R K + + D ++ Sbjct: 122 WRPFKV-SANREVALFSHLWNWARSKGITDLPNPCGGIRRNKERGRDVYI----DDTTYR 176 Query: 184 SFWSEGSQP-RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242 + + Q R A + +G R SD +H+ N I KTG + + + Sbjct: 177 AVYQAADQTLRDAMDLAYLTGQRVSDVVSMDERHIVNGALEICQAKTGVKLAIAITGELS 236 Query: 243 KLLAMTPIGKE-------TFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKF 292 L+ K ++ +++ F AGV K +R Sbjct: 237 VLIKRIFDRKRGMKLRSTRLIVDAKGLELSRIGLRYRFDKARAAAGVAKEVFQFRDLRAK 296 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKG 325 +AT AD + A G +V E Y + Sbjct: 297 AATDKADLAGDMRQAQAQLGHASVTMTEHYVRK 329 >gi|237795760|ref|YP_002863312.1| phage integrase [Clostridium botulinum Ba4 str. 657] gi|229261691|gb|ACQ52724.1| phage integrase [Clostridium botulinum Ba4 str. 657] Length = 330 Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats. Identities = 48/258 (18%), Positives = 94/258 (36%), Gaps = 13/258 (5%) Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPSSAIQ 135 Y S L++ + +++ I ITT +R + R +S Sbjct: 61 YLASKKLDGLSLKTLKNYQYNL-AIFADHLRKPLGTITTMDLRMFLAVRCKNMKATSVNG 119 Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA 195 ++ ++ F W +EY+ NP +++ K T+E+++ + S+ + + Sbjct: 120 QISILKSFFGWLHDEEYIPKNPAKKLKQTKEPKRLRHAMTEEEVELLRQ-ASKTDREKAL 178 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-----ITVELPDGFMKLLAMTPI 250 EFL+ +G R S+ L + S+ G + + K L Sbjct: 179 VEFLISTGCRLSEVVGVNKDDLNWHEMSLNVIGKGNKERKVYFSTKAKILLKKYLLTRKD 238 Query: 251 GKETFFINNDK--QKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHE 306 E F+ + + ++ K A +AG+NKS H R AT ++G Sbjct: 239 DNEALFVTSKRPHGRLGGRSVQREIKKIANRAGLNKSVYPHLFRHSFATCKINSGMPLPV 298 Query: 307 LMATYGWKTVDQAETYTK 324 L G ++ + Y + Sbjct: 299 LQHIMGHESPSTTQVYAQ 316 >gi|224368839|ref|YP_002603000.1| tyrosine recombinase XerD [Desulfobacterium autotrophicum HRM2] gi|223691555|gb|ACN14838.1| tyrosine recombinase XerD [Desulfobacterium autotrophicum HRM2] Length = 384 Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats. Identities = 57/307 (18%), Positives = 111/307 (36%), Gaps = 21/307 (6%) Query: 51 LTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDF 109 L G + E+ K TL+ + +Y W + + ++ + +++ + D Sbjct: 62 LQGDIVRGEFDIEKPKSAITLQEVWEKYLP---WVKVNKKTWLNDQYHYNHHLKPVFADN 118 Query: 110 DYRKITTKHIRSGVESRKH------TPSSA---IQFLTSMRVLFKWAVRQE-YVAINPCL 159 I+ I + + K P +A + + L+ A + Y NPC Sbjct: 119 PLDTISPFDIEKFMVTMKKGKSKRGKPYAAATIKHQVVLLTRLYSVAEQWGLYSGDNPCK 178 Query: 160 SVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA--FEFLLYSGLRCSDSCRAGVQHL 217 V++PK + T +++ + A F L++GLR + + +++ Sbjct: 179 KVKKPKLNNQVTEFLTDDELNSLLDVLEKWHNKMSAGFILFCLHTGLRRGELFKLTWENV 238 Query: 218 Q--NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKA 275 +K K T+ L D +++L P +T +I K T F + Sbjct: 239 DLTRQSMVLKDPKGKLDQTLPLSDKAVEVLNSLPKDYKTQWIFYGKDGKQRTDFKGPWDR 298 Query: 276 KATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR-IRLG 332 AG+ K HG+R A+ AG + + K + Y AD+ +R Sbjct: 299 IKVAAGLPKDFRLHGLRHHFASALVSAGVDLYTVQKLLCHKDAAMTQRYAHLADKTLRDA 358 Query: 333 IKNSRRI 339 + S + Sbjct: 359 VNLSDSL 365 >gi|224541324|ref|ZP_03681863.1| hypothetical protein CATMIT_00484 [Catenibacterium mitsuokai DSM 15897] gi|224525761|gb|EEF94866.1| hypothetical protein CATMIT_00484 [Catenibacterium mitsuokai DSM 15897] Length = 310 Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats. Identities = 44/267 (16%), Positives = 82/267 (30%), Gaps = 24/267 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKIT-----TKHIRSGVESRKHTPSSAIQFLTS 139 + +V + S+E + G ++ + + + ++ +L+S Sbjct: 15 KNYSVLTLQSYERELTDFLLFIGKESISLQEVDYYVIQNYLIYLNEKHLSHTTINHYLSS 74 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----QQFKSFWSEGSQPRLA 195 +R FK+ +Q V NP V K + ++M + S G + + Sbjct: 75 LRSFFKYLCQQNSVVSNPFSQVHSLKTGSRNPDFLYVDEMMGYLDSIDTHTSLGVRNKAL 134 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIG--- 251 E + SGLR S+ + + N I+ K V D K L Sbjct: 135 LELMYASGLRVSEVVSLRLSQIDFNRQMIRVLGKGSKEREVPFHDYAKKWLLQYINDDRI 194 Query: 252 ---------KETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADA 300 + F+N +K+ H +R AT DA Sbjct: 195 SIMNEYHEAHDYVFVNRRGKKLTNRGVENIIDRTMYLYDPLRKIHPHTIRHSFATHLLDA 254 Query: 301 GATAHELMATYGWKTVDQAETYTKGAD 327 G + G ++ + YT + Sbjct: 255 GMDIRVVQELLGHSSLSTTQIYTHVSQ 281 >gi|191174259|ref|ZP_03035768.1| tyrosine recombinase XerC [Escherichia coli F11] gi|300979372|ref|ZP_07174530.1| tyrosine recombinase XerC [Escherichia coli MS 200-1] gi|190905442|gb|EDV65072.1| tyrosine recombinase XerC [Escherichia coli F11] gi|300308044|gb|EFJ62564.1| tyrosine recombinase XerC [Escherichia coli MS 200-1] gi|324014716|gb|EGB83935.1| tyrosine recombinase XerC [Escherichia coli MS 60-1] Length = 298 Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats. Identities = 42/270 (15%), Positives = 91/270 (33%), Gaps = 20/270 (7%) Query: 75 ISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITT------KHIRSGVESRK 127 + Y + L+ + ++++ + II + + + ++ + Sbjct: 8 VERYLRYLSVERQLSPITLLNYQRQLEAIIHFASENGLQSWQQCDVTMVRNFAVRSRRKG 67 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186 +S L+++R F W V Q + NP V PK + +DM + Sbjct: 68 LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMSRLLDIDI 127 Query: 187 --SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT--------VE 236 + R E + +GLR S+ ++HL + G+ V Sbjct: 128 NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAVA 187 Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSA 294 + ++ L + + F++ ++++A F K G+N H +R A Sbjct: 188 WIEHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRHSFA 247 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTK 324 T ++ + G + + YT Sbjct: 248 THMLESSGDLRGVQELLGHANLSTTQIYTH 277 >gi|160940780|ref|ZP_02088122.1| hypothetical protein CLOBOL_05674 [Clostridium bolteae ATCC BAA-613] gi|158436300|gb|EDP14067.1| hypothetical protein CLOBOL_05674 [Clostridium bolteae ATCC BAA-613] Length = 382 Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats. Identities = 42/258 (16%), Positives = 87/258 (33%), Gaps = 12/258 (4%) Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT----PSSA 133 Y + + A ++ + + ++ G KI I + + T S+ Sbjct: 111 YIAKMRFDNKAKSTIDQYSKFLGDMLCYLG-KPVDKIQDFDIMNFLNFYAETNGISDSTK 169 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193 F + ++ Y+ NP +V+ K + T++++++ + E + Sbjct: 170 NHKRLIASSFFTFLHKRGYIIKNPMATVDTIKYTAQVREALTQKEVERMRVACGENLRDN 229 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGK 252 + E L SG R S+ V+++ ++ K V D + L G+ Sbjct: 230 VVLELFLASGCRVSEVAGMRVENIDMKQKTVIVLGKGKKERPVFFSDRLLVYLEKYLDGR 289 Query: 253 E----TFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHE 306 + Q + + + KAG+ K H +R AT + + G Sbjct: 290 REGPVVISVRAPYQGIKKNAMENIVREISKKAGIEKRVFPHLLRHTFATHALNKGMPLES 349 Query: 307 LMATYGWKTVDQAETYTK 324 L G ++ Y K Sbjct: 350 LSDLMGHACIETTRIYAK 367 >gi|291457670|ref|ZP_06597060.1| tyrosine recombinase XerD [Bifidobacterium breve DSM 20213] gi|291380723|gb|EFE88241.1| tyrosine recombinase XerD [Bifidobacterium breve DSM 20213] Length = 309 Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats. Identities = 41/286 (14%), Positives = 96/286 (33%), Gaps = 32/286 (11%) Query: 71 LKWLISEYRKS-AHWGSLAVNSRISFESYFDQ---IIRKSGDFDYRKITTKHIR---SGV 123 L ++ LA + ++ES ++ ++ G I + + + + Sbjct: 6 FGTLREQFLVHIGIERGLAKATVSAYESDLNKYVAWLQTHGITKPDDIAKQDVEDYIAAL 65 Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 ++ + S + L S+ ++A+ Q V+ + SV+ PK + + +++ + Sbjct: 66 DADGESARSKARRLASIHEFHRFALAQHAVSADVAASVKAPKGASVLPDVLSVDEVSRLL 125 Query: 184 SFWSEG-------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT-V 235 + G + + EF+ +G R S++ + + ++ G+ V Sbjct: 126 DAAAVGGSTDPVVLRDKALLEFMYATGCRVSEAVGTNLDDIDLEEKVVRLMGKGSKQRLV 185 Query: 236 ELPD---------------GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA 280 L + + F+N ++++ K +A Sbjct: 186 PLGSYARNSVVAYLNAGRGELERRSTAKVPERRALFLNKRGKRISRQSVWEIVKTAGGRA 245 Query: 281 GVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 + K H +R AT GA + G +V + YT Sbjct: 246 DITKPLHPHTLRHSFATHLIQGGADVRTVQELLGHASVTTTQIYTH 291 >gi|32474020|ref|NP_867014.1| integrase/recombinase [Rhodopirellula baltica SH 1] gi|32444557|emb|CAD74556.1| integrase/recombinase [Rhodopirellula baltica SH 1] gi|327543299|gb|EGF29732.1| integrase/recombinase [Rhodopirellula baltica WH47] Length = 300 Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats. Identities = 43/278 (15%), Positives = 93/278 (33%), Gaps = 28/278 (10%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITT--------KHIRSGVES 125 I+ + + + + + ++ G + +I + ++ ++ Sbjct: 5 ITRFLQYMATERNASDLTIKAYREDLFAFAEWIGQAEAGRIQLDSLTPQQLRQFQAALQQ 64 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + ++ + L S+R FK+A+R+ + NP + P+ + T E++ + Sbjct: 65 AGYARTTIARKLASLRSFFKFAMREGMASSNPAKPLRNPRSSRKLPHVLTSEEVGRLLVA 124 Query: 186 WSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-ELPDG 240 G + R E + SGLR S+ L + + + G + L Sbjct: 125 PPAISEAGLRDRAILETMYSSGLRVSELVGLRDGDLDFSQGITRVRGKGRKERISPLGSY 184 Query: 241 FMKLLAMTPIGKE------------TFFINNDKQKMNATQFSIWFKAKATKAGVNK--SA 286 +K + + F+N + + KA ++ S Sbjct: 185 AIKAIQAYAGRRSRSPESEKLGRAAPVFVNRFGNILTTRSVGRMLEKYIAKAELDTRTSP 244 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R AT D GA + G K++ + YT Sbjct: 245 HTLRHSFATHLLDRGADIRSVQELLGHKSLTTTQIYTH 282 >gi|206602847|gb|EDZ39328.1| Putative phage integrase family protein [Leptospirillum sp. Group II '5-way CG'] Length = 314 Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats. Identities = 47/290 (16%), Positives = 95/290 (32%), Gaps = 29/290 (10%) Query: 71 LKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSG-------DFDYRKITTKHIRSG 122 ++ L+ + + + ++ ++ + R G DF +T R Sbjct: 5 VRDLLDAFEEDLRVASGRSPHTTQAYLLDLFALARFLGEHGLSLLDFSPEDVTRYFTRRE 64 Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM--- 179 + + + L+++R ++ R+ +I+P ++ P+ +E++ Sbjct: 65 DLAMRSR----SRVLSAIRSWSRFLKRRGLPSIDP-DTLPVPRLPRNLPGVLDEEEILRL 119 Query: 180 -QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238 + EG + R SGLR S+ + L I+ G V Sbjct: 120 LEAPDPKTDEGIRDRAILATFYASGLRVSELAELTLDRLNLKEEQIRVTGKGQKERVAFL 179 Query: 239 DG---------FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAH 287 DG ++ T +T F+ + + K A + G+++ S H Sbjct: 180 DGVSCARLRLYLERVRPSTSTSDKTLFLTRRQTGFTRQGLWLLIKGYAKQCGIDRNVSPH 239 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 +R AT G + G + E YT D L +R Sbjct: 240 TLRHSFATHLLSHGMDIRSIQILLGHSDIQTTEIYTH-VDIRMLAEDLAR 288 >gi|251772344|gb|EES52912.1| phage integrase family protein [Leptospirillum ferrodiazotrophum] Length = 336 Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats. Identities = 49/283 (17%), Positives = 94/283 (33%), Gaps = 32/283 (11%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF----------DYRKITTKHIRSGV 123 L YR++ + + + + + + Sbjct: 32 LCQAYRRNLVLSGRSPKTLKAAMDDLALLAALEARLLEGGAGFLWERLDRPRALRFVKRL 91 Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 R + PSS + L+S+R + + Q ++A +P + P+ T+ + + Sbjct: 92 HDRGYAPSSIARILSSLRGFYGFLKTQGHIAEDPFAGISGPRANRPLPPLLTETEAETLV 151 Query: 184 SFW---------SEGS--QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-KTGT 231 + EG+ + R E +G+R S+ C + I S++ + K G Sbjct: 152 TAPVRNPVPKGGDEGTSLRDRAILELFYQTGVRLSELCGLLWEDAAPGIVSLRVRGKGGK 211 Query: 232 IITVELPDGFMKLLAMTP--------IGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283 V + +K L F + D ++ Q S K A +AG+ Sbjct: 212 ERRVPVVGEALKALCALREFLLKSGVSPTGPLFADGDGGALSPWQVSRIVKKYAREAGLQ 271 Query: 284 K--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 K S H +R AT D A E+ + G ++ + Y Sbjct: 272 KTVSPHALRHSCATHLLDREADLREIQSLLGHASLGSTQRYLH 314 >gi|241663999|ref|YP_002982359.1| site-specific tyrosine recombinase XerD [Ralstonia pickettii 12D] gi|240866026|gb|ACS63687.1| tyrosine recombinase XerD [Ralstonia pickettii 12D] Length = 298 Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats. Identities = 47/268 (17%), Positives = 87/268 (32%), Gaps = 23/268 (8%) Query: 86 SLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESR--KHTPSSAIQFLTSMR 141 LA N+ ++ + + +R + SSA + T + Sbjct: 21 GLARNTLDAYRRDLTLYAHWLAARGKSIAETEDGDLADYFAARHAESRASSANRRRTVFK 80 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAFE 197 F+WA+R+ V+ +P + K+ + ++ ++ + G + R E Sbjct: 81 RFFQWALREHVVSTDPSRLLPTAKQPPRFPKTLSETQVEALINAPDVDTPLGLRDRAMIE 140 Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP------DGFMKLLAMTPIG 251 + SGLR S+ + N ++ +P D + L Sbjct: 141 LMYASGLRVSEIVALKTVEVGLNEGVVRVVGGKGGKDRLVPFGAEAGDWLRRYLRDGRTA 200 Query: 252 ------KETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGAT 303 + F+ + M F K A A ++ S H +R AT + GA Sbjct: 201 LLGERTADALFVTARGEGMTRQAFWYLIKRYALLADIHAPLSPHTLRHAFATHLLNHGAD 260 Query: 304 AHELMATYGWKTVDQAETYTKGADRIRL 331 + G + + YT A R RL Sbjct: 261 LRVVQMLLGHADISTTQIYTHVA-RERL 287 >gi|156935864|ref|YP_001439780.1| site-specific tyrosine recombinase XerC [Cronobacter sakazakii ATCC BAA-894] gi|156534118|gb|ABU78944.1| hypothetical protein ESA_03747 [Cronobacter sakazakii ATCC BAA-894] Length = 301 Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats. Identities = 44/259 (16%), Positives = 86/259 (33%), Gaps = 19/259 (7%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITT-----KHIRSGVESRKH-TPSSAIQFLT 138 L+ + +++E I+ +G+ + + R PSS L+ Sbjct: 21 RQLSPVTLLNYERQLTAIVGLAGEAGLKSWAQCDAAMVRSLAVRSRRAGLGPSSLALRLS 80 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQPRLA 195 ++R F W V Q + NP V PK + +D+ + + R Sbjct: 81 ALRSFFDWQVSQGELKANPAKGVSTPKTPRHLPKNIDVDDVNRLLDIDLNDPLAVRDRAM 140 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT--------IITVELPDGFMKLLAM 247 E + +GLR S+ HL + G+ V + ++ L + Sbjct: 141 LEIMYGAGLRLSELVNIDCNHLDLTSGEVWVMGKGSKERRLPIGRSAVAWIEHWLNLREL 200 Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAH 305 + F++ ++++A F K G+N H +R AT ++ Sbjct: 201 FGPDDDALFLSKQGKRISARNVQKRFAEWGIKQGLNSHVHPHKLRHSFATHMLESSGDLR 260 Query: 306 ELMATYGWKTVDQAETYTK 324 + G + + YT Sbjct: 261 AVQELLGHANLSTTQIYTH 279 >gi|199599532|ref|ZP_03212920.1| Integrase [Lactobacillus rhamnosus HN001] gi|199589573|gb|EDY97691.1| Integrase [Lactobacillus rhamnosus HN001] gi|259649723|dbj|BAI41885.1| integrase [Lactobacillus rhamnosus GG] Length = 298 Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats. Identities = 40/235 (17%), Positives = 81/235 (34%), Gaps = 23/235 (9%) Query: 111 YRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170 + + + + + +S + ++S+R +++ VR + V NP VE K+ Sbjct: 48 VDDLDVQTYLTDLNKQALARTSIARKISSLRSFYRYLVRIDVVKRNPFELVELKKQHHHL 107 Query: 171 IRPWTKEDMQQFKS----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIK 225 + + + ++Q+ + R E L +G+R S+ + + N + Sbjct: 108 PQFFYEAEIQELFKTVEGKTPLDQRNRALLEVLYGTGIRVSECANLTLNQVDFNTGLLLI 167 Query: 226 TQKTGTIITVE------------LPDGFMKLLAMTPIGKETFFINNDKQKMNATQ----F 269 K V L DG L+ + F+N + + A Sbjct: 168 HGKGNKDRYVPFGRYAQRALQTYLKDGRQTLMNKRDVQHRFVFVNQYGRPITARGIEYIL 227 Query: 270 SIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 K + A ++ H +R AT D GA + G ++ + YT Sbjct: 228 DQLIKQTSLIANIH--PHMLRHSFATHMLDHGADLRTVQELLGHASLSTTQIYTH 280 >gi|169826676|ref|YP_001696834.1| hypothetical protein Bsph_1094 [Lysinibacillus sphaericus C3-41] gi|168991164|gb|ACA38704.1| conserved hypothetical protein [Lysinibacillus sphaericus C3-41] Length = 280 Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats. Identities = 43/266 (16%), Positives = 95/266 (35%), Gaps = 12/266 (4%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE---SRKHTPS 131 I ++++ + LA + ++ Q+ + + + KIT K IR + + + + Sbjct: 9 IEKFKEEYMYR-LAPRTIRGYQLSVKQLQDYT-EKPFNKITKKDIRHWMMVLNEKGYKQN 66 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191 S L ++ +++ + + INP + PK R +K+ + E Sbjct: 67 SIKNKLIGLKTFYQYCFDEGLMIINPAKDIPFPKVAETLPRYLSKKQLTCLLEHVCERLY 126 Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITV----ELPDGFMKLL 245 R E L +G+R S+ + + + I K V + L Sbjct: 127 ERTIIEVLYATGVRISELVKIKKEDINWSERSIQILEGKGNRSRIVLFNLDCAQHLETYL 186 Query: 246 AMTPIGKETFFINNDKQKMNATQ-FSIWFKAKATKAGVNKSAHGVRKFSATISADAGATA 304 F++ + +M ++ + F+ + + G + H +R A A+ G Sbjct: 187 NSRTDKLPYVFVDKKETRMIRSREINTLFQFYSKQLGFRVTPHMLRHTFAAHLAERGMPL 246 Query: 305 HELMATYGWKTVDQAETYTKGADRIR 330 + G +T + Y + + R Sbjct: 247 ECIQQLLGHETTHSTQLYARLYNHAR 272 >gi|306815150|ref|ZP_07449303.1| site-specific tyrosine recombinase XerC [Escherichia coli NC101] gi|305851519|gb|EFM51973.1| site-specific tyrosine recombinase XerC [Escherichia coli NC101] Length = 298 Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats. Identities = 42/270 (15%), Positives = 91/270 (33%), Gaps = 20/270 (7%) Query: 75 ISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITT------KHIRSGVESRK 127 + Y + L+ + ++++ + II + + + ++ + Sbjct: 8 VERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRKG 67 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186 +S L+++R F W V Q + NP V PK + +DM + Sbjct: 68 LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMSRLLDIDI 127 Query: 187 --SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT--------VE 236 + R E + +GLR S+ ++HL + G+ V Sbjct: 128 NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAVA 187 Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSA 294 + ++ L + + F++ ++++A F K G+N H +R A Sbjct: 188 WIEHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRHSFA 247 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTK 324 T ++ + G + + YT Sbjct: 248 THMLESSGDLRGVQELLGHANLSTTQIYTH 277 >gi|73662825|ref|YP_301606.1| putative integrase recombinase [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|82582337|sp|Q49X37|XERC_STAS1 RecName: Full=Tyrosine recombinase xerC gi|72495340|dbj|BAE18661.1| putative integrase recombinase [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 296 Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats. Identities = 39/265 (14%), Positives = 90/265 (33%), Gaps = 20/265 (7%) Query: 85 GSLAVNSRISFESYFDQ--IIRKSGDFDYRKITTKHIRSGVE---SRKHTPSSAIQFLTS 139 + ++ S+ +Q + D K R+ + S+ +S + +++ Sbjct: 16 KQFSEHTLKSYHDDLEQFNVFLAQEHLDLNAFEYKDARNYLSYLYSKNLKRTSVSRKIST 75 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF----KSFWSEGSQPRLA 195 +R +++ + Q+ +NP + + PK++ + +E+M+ ++ +G + R+ Sbjct: 76 LRSFYEYWMTQDEAVVNPFIQLVHPKKEHYLPHFFYEEEMEALFDTVENDAKKGLRDRVI 135 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE--------LPDGFMKLLA 246 E L +G+R S+ Q + +K K G + + Sbjct: 136 LELLYSTGIRVSELVHIKEQDIDMTSPGVKVLGKGGKERFIPFGEFCKQSMERYLASFKP 195 Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATK-AGV-NKSAHGVRKFSATISADAGATA 304 + +N + + AGV H +R AT + GA Sbjct: 196 KLNSNHDYLLVNMKGDPITERGVRYVLNDVVKRTAGVTEIHPHKLRHTFATHMLNQGADL 255 Query: 305 HELMATYGWKTVDQAETYTKGADRI 329 + + G + YT + Sbjct: 256 RTVQSLLGHVNLSTTGRYTHVTNEQ 280 >gi|269792953|ref|YP_003317857.1| integrase family protein [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100588|gb|ACZ19575.1| integrase family protein [Thermanaerovibrio acidaminovorans DSM 6589] Length = 292 Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats. Identities = 48/277 (17%), Positives = 96/277 (34%), Gaps = 16/277 (5%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF---DYRKITTKHIRSGVESR---K 127 +I + + + ++ I++ Q + IT H+R + S Sbjct: 1 MIDSFLEYLKSLGRSEHTVINYGVDLGQFAEYLEQAEVHRVQDITRDHVRGFLRSLVGYG 60 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 +SA++ ++S+R + + +P V+ P+ R + D+ + Sbjct: 61 FAKASALRKMSSIRGFMGYLRDIGVIERDPSEGVKGPRSSPGLPRAISYPDVCRLLEEGP 120 Query: 188 EGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-ITVE----LPD 239 G + RL E L SGLR S+ C + I+ G+ V + D Sbjct: 121 SGREAFRDRLVMELLYGSGLRVSELCDLDWDDVDVEERWIRVMGKGSKGRMVPFGSIVQD 180 Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISA 298 + M F +++ A + G+ S H +R AT Sbjct: 181 MLRRWGEMVGRAGPLFPGKRGAERLTQRTVHRIVSGCARRVGLFGVSPHTLRHSFATHLL 240 Query: 299 DAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIK 334 + GA+ + G +++ + Y A+R+R + Sbjct: 241 EGGASLRVVQELMGHESLVTTQRYLDVTAERMRFSYQ 277 >gi|19553231|ref|NP_601233.1| site-specific tyrosine recombinase XerC [Corynebacterium glutamicum ATCC 13032] gi|62390867|ref|YP_226269.1| site-specific tyrosine recombinase XerC [Corynebacterium glutamicum ATCC 13032] gi|41326206|emb|CAF20368.1| SITE-SPECIFIC RECOMBINASE [Corynebacterium glutamicum ATCC 13032] Length = 315 Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats. Identities = 47/300 (15%), Positives = 101/300 (33%), Gaps = 17/300 (5%) Query: 50 ALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGD 108 A +G S P+ L LI ++ + + + + S + D Sbjct: 9 ARSGRNA-PPSGISGADAPSKLHTLIDDFCEHLDLVVGRSAATIRGYRSDLYAMADTIED 67 Query: 109 FD-YRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167 D + T + + ++ + S++ WA + ++ + + PK Sbjct: 68 IDNFSLPTLRQWLGIAVDEGKSRATLARRTASVKAFSSWAQKNGHLKADEAARLISPKIT 127 Query: 168 TEGIRPWTKEDMQQFKSFWS-----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222 + + ++ F + E + E L +G+R ++ C + + + Sbjct: 128 RDLPKILGEQQAGDFVENAASTNEEEFLRDSAILELLYATGMRVAELCGIDLSDIDYDRK 187 Query: 223 SIKT-QKTGTIITVELPDGFMKLLAMTPIGKE-------TFFINNDKQKMNATQFSIWFK 274 ++ K V + K L ++ F+ Q++NA Q Sbjct: 188 MVRVLGKGNKERVVPFGESAHKALRNWLDVRDEMTEDPKALFVGVRGQRINARQVRRIVD 247 Query: 275 AKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 A GV+ S H +R +AT D GA ++ G ++ + YT +++ L Sbjct: 248 RAAKVTGVDHLSPHSLRHTAATHLLDGGADLRQVQELLGHSSMQTTQIYTHVSNKRLLEA 307 >gi|298531237|ref|ZP_07018637.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1] gi|298508847|gb|EFI32753.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1] Length = 384 Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats. Identities = 54/254 (21%), Positives = 100/254 (39%), Gaps = 17/254 (6%) Query: 90 NSRISFESYFDQIIR----KSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFLTSMRV 142 + S++S + K G +IT I + + R P+SA + + +R Sbjct: 116 GYKRSWKSDLSFLRTHLVPKFGKLHLDQITRDDIMAMHQERLKNGAAPASANRLVILLRY 175 Query: 143 LFKWAVRQEY--VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL--AFEF 198 +F A++ E V +NP V + + R T+E++Q+ E P L Sbjct: 176 MFNLAIQWETPGVTVNPTKGVPLAEENNQRERYLTEEEVQRLCKAVKESENPLLEPIISM 235 Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSIKT--QKTGTIITVELPDGFMKLLAMTPI--GKET 254 L+ +G R S+ A + L + K+G TV L + +++L P G E Sbjct: 236 LILTGARKSEVLNAKWEDLDLERKRWRIPYTKSGKPRTVPLSESALEVLRSVPKVEGSEY 295 Query: 255 FFIN-NDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGW 313 F + + N+ ++ W A+ + H +R A+ +AG +E+ G Sbjct: 296 IFPSPVTGKPFNSI-YNSWNTARIKSGLEDVKIHTLRHSFASFLVNAGRNLYEVGKLLGH 354 Query: 314 KTVDQAETYTKGAD 327 + Y+ +D Sbjct: 355 TQMRTTMRYSHLSD 368 >gi|161619421|ref|YP_001593308.1| phage integrase [Brucella canis ATCC 23365] gi|254704727|ref|ZP_05166555.1| phage integrase [Brucella suis bv. 3 str. 686] gi|260566026|ref|ZP_05836496.1| phage integrase [Brucella suis bv. 4 str. 40] gi|261755423|ref|ZP_05999132.1| integrase/recombinase [Brucella suis bv. 3 str. 686] gi|161336232|gb|ABX62537.1| phage integrase [Brucella canis ATCC 23365] gi|260155544|gb|EEW90624.1| phage integrase [Brucella suis bv. 4 str. 40] gi|261745176|gb|EEY33102.1| integrase/recombinase [Brucella suis bv. 3 str. 686] Length = 164 Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats. Identities = 33/155 (21%), Positives = 60/155 (38%), Gaps = 14/155 (9%) Query: 205 RCSDSCRAGVQH-------LQN-----NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGK 252 R D L + F ++ KTG + + + ++L TP Sbjct: 9 RRGDIAALRWDQRCSKTVFLDGEAKSVDGFELRQGKTGKRLLLPITPILSEVLEATPRQG 68 Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMAT 310 ET + + + + A + K + HG+RK I A+ GA+ ++M T Sbjct: 69 ETVLVTAYGEPFSPKSLTGRMADWTPSAKLPKGFTLHGLRKTLGKILAEGGASTRQIMDT 128 Query: 311 YGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDS 345 G + +AE YT+ A++ RL R+ + + Sbjct: 129 LGHDDIARAELYTREAEQARLATDGMSRVVRLKRN 163 >gi|297617131|ref|YP_003702290.1| tyrosine recombinase XerC [Syntrophothermus lipocalidus DSM 12680] gi|297144968|gb|ADI01725.1| tyrosine recombinase XerC [Syntrophothermus lipocalidus DSM 12680] Length = 306 Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats. Identities = 38/294 (12%), Positives = 92/294 (31%), Gaps = 39/294 (13%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFD--------YRKITTKHIRSGVESRKH---TPSSA 133 + + + S ++ + D + + + +R + + S+ Sbjct: 20 KGASPLTLAGYRSDLERFVAHFADKRGIGPEEIGFEVLDPRTVREYLAHLQECGLKRSTM 79 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EG 189 + + ++R K+ + + +NP +V P+R+ R ++++ + G Sbjct: 80 ARKVAALRSFGKYLCSSQIIEVNPVATVSTPRREKRLPRFLYSQEVEALLAAPDGGDVLG 139 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-------------E 236 + + E L +G+R + + I+ G+ + Sbjct: 140 LRDQAILELLYATGIRVGELVGLDLPDFDAEERFIRVMGKGSKERIVPVGARAVEAMNRY 199 Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294 L L A + F+N +++A + + S H +R A Sbjct: 200 LNSSRRVLAARKQGTENAIFLNRHGTRLSARGVRNIVNRYVEEIALRLKISPHTLRHTFA 259 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348 T + GA + G + + YT + R+ ++ D P Sbjct: 260 THLLNGGADLRSVQELLGHARLSTTQVYTHV---------TAERLKNIYDDKFP 304 >gi|126175914|ref|YP_001052063.1| phage integrase family protein [Shewanella baltica OS155] gi|125999119|gb|ABN63194.1| phage integrase family protein [Shewanella baltica OS155] Length = 451 Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats. Identities = 51/289 (17%), Positives = 110/289 (38%), Gaps = 16/289 (5%) Query: 48 MSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKS 106 + A + SPR + + K + +++ S ++ ++ Sbjct: 77 LQAWREENTQPSMSASPR-----FDVFVEQTWKPMIFEHWKPSTKRSVLPALNRRLLAHF 131 Query: 107 GDFDYRKITTKHIRSGVESRKHTP-SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK 165 G + I + +++ + T +A + L +++ +FK A+RQ + NPC+ + + K Sbjct: 132 GRYPLHMINHRMVQAWFDEISKTRKGAANRNLDTLQSVFKLALRQGHCLTNPCIGIRQNK 191 Query: 166 RKTEGIRPWTKEDMQQFKSFWSE-----GSQPRLA--FEFLLYSGLRCSDSCRAGVQHLQ 218 R+ R + +MQ+ E GS + A LL +G R S+ ++++ Sbjct: 192 RRV-LNRFLSVAEMQRLSVALDECEEVGGSIAQCADILRLLLLTGCRLSEITFLKGEYVR 250 Query: 219 NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKAT 278 N + KTG + + + + +L+ T + + S+W + + Sbjct: 251 GNELHLPDSKTGAKV-LYIGQAAVDILSRYHCKANTELFPMKQGASTSLVQSLWLRLRKQ 309 Query: 279 KAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 + H +R A+ + G + + + G K V YT D Sbjct: 310 IGIEDVRLHDLRHTFASYAVMDGCSIPMVASLLGHKKVTMTLRYTHVGD 358 >gi|170757708|ref|YP_001782133.1| phage integrase [Clostridium botulinum B1 str. Okra] gi|169122920|gb|ACA46756.1| phage integrase [Clostridium botulinum B1 str. Okra] Length = 331 Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats. Identities = 47/258 (18%), Positives = 92/258 (35%), Gaps = 13/258 (5%) Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPSSAIQ 135 Y S L++ + +++ I I T +R + +R PSS Sbjct: 62 YLASKKLDGLSLETLKNYQYNL-AIFADYLRKPLATINTMDLRMFLGARCKNMKPSSMNG 120 Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA 195 ++ ++ F W +EY+ NP +++ K +P T+E+ + + E + + Sbjct: 121 QISILKSFFGWLEAEEYIPKNPAAKLKQTKEPKRVRKPLTEEEAELLRQAC-ETDRQKAL 179 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELP----DGFMKLLAMTPI 250 EFL+ +G R + + ++ + S K V K L Sbjct: 180 TEFLISTGCRLDEVFKVNKDNINWHEMSLFVVGKGDKERKVYFNTKAKILLKKYLFSRED 239 Query: 251 GKETFFINNDK--QKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHE 306 F+ + + ++ FK A AG+ KS H R AT ++G Sbjct: 240 DDPALFVTSKRPYHRLGKRSIQREFKKIANMAGIEKSIHPHLFRHSFATYKINSGMPMPI 299 Query: 307 LMATYGWKTVDQAETYTK 324 + G ++ + Y + Sbjct: 300 IQHLMGHESPATTQIYAQ 317 >gi|218236017|ref|YP_002367298.1| DNA integration/recombination/invertion protein [Bacillus cereus B4264] gi|218163974|gb|ACK63966.1| site-specific recombinase, phage integrase family [Bacillus cereus B4264] Length = 369 Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats. Identities = 46/312 (14%), Positives = 108/312 (34%), Gaps = 38/312 (12%) Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVE 124 TLK ++ + + S+ ++ + ++ + +I G K+ HI+ + Sbjct: 60 PSKVTLKDYLNHWLEIKS-MSIEKSTFAGYRAFINQHVIPSIGMVALHKLNVMHIQKCYK 118 Query: 125 SRKHTPSSAIQFLTSMRVL---FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 + + L R+L AV+Q ++ NP E PK++ I+ WT+E++++ Sbjct: 119 NAIDKGIANNSILLMHRILKSALNLAVKQNIISRNPADFAEIPKKEKTPIQTWTEEEVKK 178 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--------------NNIFSIKTQ 227 F + S+ S+ + + + +G+R + Q + +N + Sbjct: 179 FLA-HSQESRYHIGYLLAITTGMRLGEVLGLRWQDIDFEKHTVTINQTSGHDNKIKKTAK 237 Query: 228 KTGTIITVELPDGFMKLLAMTPI--------------GKETFFINNDKQKMNATQFSIWF 273 + T+ +P+ + L + ++ N + + F F Sbjct: 238 TNSSKRTIPVPNETIAALKKHKVLINKEKLRFGSAYLDQDLINCNEFGRIIKRAHFRKSF 297 Query: 274 KAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRL 331 K G+ + H +R AT+ G + G + Y+ + Sbjct: 298 IRMTHKVGIKEIKFHDLRHTHATLLLKQGVNPKIISERLGHTDISMTLSVYSHVL--PNM 355 Query: 332 GIKNSRRISSVV 343 + + + Sbjct: 356 QEEAVKNFGKSI 367 >gi|34222908|sp|Q8NNZ9|XERC_CORGL RecName: Full=Tyrosine recombinase xerC gi|21324798|dbj|BAB99421.1| Integrase [Corynebacterium glutamicum ATCC 13032] Length = 308 Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats. Identities = 47/300 (15%), Positives = 101/300 (33%), Gaps = 17/300 (5%) Query: 50 ALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGD 108 A +G S P+ L LI ++ + + + + S + D Sbjct: 2 ARSGRNA-PPSGISGADAPSKLHTLIDDFCEHLDLVVGRSAATIRGYRSDLYAMADTIED 60 Query: 109 FD-YRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167 D + T + + ++ + S++ WA + ++ + + PK Sbjct: 61 IDNFSLPTLRQWLGIAVDEGKSRATLARRTASVKAFSSWAQKNGHLKADEAARLISPKIT 120 Query: 168 TEGIRPWTKEDMQQFKSFWS-----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222 + + ++ F + E + E L +G+R ++ C + + + Sbjct: 121 RDLPKILGEQQAGDFVENAASTNEEEFLRDSAILELLYATGMRVAELCGIDLSDIDYDRK 180 Query: 223 SIKT-QKTGTIITVELPDGFMKLLAMTPIGKE-------TFFINNDKQKMNATQFSIWFK 274 ++ K V + K L ++ F+ Q++NA Q Sbjct: 181 MVRVLGKGNKERVVPFGESAHKALRNWLDVRDEMTEDPKALFVGVRGQRINARQVRRIVD 240 Query: 275 AKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 A GV+ S H +R +AT D GA ++ G ++ + YT +++ L Sbjct: 241 RAAKVTGVDHLSPHSLRHTAATHLLDGGADLRQVQELLGHSSMQTTQIYTHVSNKRLLEA 300 >gi|118725028|ref|NP_720381.2| phage integrase family site specific recombinase [Shewanella oneidensis MR-1] gi|112949651|gb|AAN52981.2| site-specific recombinase, phage integrase family [Shewanella oneidensis MR-1] Length = 456 Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats. Identities = 55/307 (17%), Positives = 116/307 (37%), Gaps = 13/307 (4%) Query: 32 RIRLPYPHESTFIPAYMSALTGSTP--KREYINSPRKKPTTLKWLISEYRKSAHWGSLAV 89 R R+ P + + A TG + E+ + + K + Sbjct: 54 RTRILAPVSALTVKAAREKATGQLQAWREEHTQPSMSASPRFDVFVEQTWKPMIFEHWKP 113 Query: 90 NSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESRKHTP-SSAIQFLTSMRVLFKWA 147 +++ S ++ ++ G + I K +++ + T +A + L +++ +FK A Sbjct: 114 STKRSVLPALNRRLLAHFGRYPLHMINHKMVQAWFDEISKTRKGAANRNLDTLQSVFKLA 173 Query: 148 VRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-----GSQPRLA--FEFLL 200 +RQ + NPC+ + + KR+ R + +MQ+ E GS + A LL Sbjct: 174 LRQGHCLTNPCIGIRQNKRRV-LNRFLSVAEMQRLSVALDECEAVGGSIAQCADVLRLLL 232 Query: 201 YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINND 260 +G R S+ ++++ N + KTG + + + + +L+ T Sbjct: 233 LTGCRLSEITFLKGEYVRGNELHLPDSKTGAKV-LYIGQAAVDILSRYHCKANTELFPMK 291 Query: 261 KQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320 + + S+W + + + H +R A+ + G + + + G K V Sbjct: 292 QGASTSLVQSLWLRLRKQIGVEDVRLHDLRHTFASYAVMDGCSIPMVASLLGHKKVTMTL 351 Query: 321 TYTKGAD 327 YT D Sbjct: 352 RYTHVGD 358 >gi|317051491|ref|YP_004112607.1| integrase family protein [Desulfurispirillum indicum S5] gi|316946575|gb|ADU66051.1| integrase family protein [Desulfurispirillum indicum S5] Length = 330 Score = 121 bits (304), Expect = 1e-25, Method: Composition-based stats. Identities = 42/271 (15%), Positives = 98/271 (36%), Gaps = 24/271 (8%) Query: 78 YRKSAHWG-SLAVNSRISF----ESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132 Y++ + L+ + + + + + ++ + + ++ + S+ Sbjct: 46 YQRYLKYECGLSQQTIDRYLFEMRRFLEFLQQEELTVETAGPRELRMYLTHKAMGKSKST 105 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK--RKTEGIRPWTKEDMQQFKSFWS--- 187 L +R +F W + ++ NP ++ PK K E ++ ++ +++ + Sbjct: 106 YANVLCYVRAIFNWLQYEGFLEENPARDLKSPKGAYKNEMPVFLKDDEQKRLRAYLNGLE 165 Query: 188 ---EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMK 243 + +LY+G+R S+ C+ ++ + + T+K + + D M+ Sbjct: 166 RNFHNDRDTAVMLCVLYTGMRASEICQLTRRNFHRQGKAFQITRKGQKEQILPIADALME 225 Query: 244 LL------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN----KSAHGVRKFS 293 +L M I + FF + + + AG++ + AH +R Sbjct: 226 ILQFYWYEHMDSIDSDFFFCRTNGKPLTPYIIWQRTSLHIKAAGIDLPRKRGAHLLRHTF 285 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTK 324 AT G E+ G V E YT Sbjct: 286 ATNLVRKGVNLIEIQRLLGHSHVAVTEIYTH 316 >gi|220917980|ref|YP_002493284.1| tyrosine recombinase XerC [Anaeromyxobacter dehalogenans 2CP-1] gi|219955834|gb|ACL66218.1| tyrosine recombinase XerC [Anaeromyxobacter dehalogenans 2CP-1] Length = 343 Score = 121 bits (304), Expect = 1e-25, Method: Composition-based stats. Identities = 49/285 (17%), Positives = 94/285 (32%), Gaps = 30/285 (10%) Query: 76 SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRKHTPSSA 133 Y S + ++R +++ Q D + +R + + + Sbjct: 20 DAYLASE--KRASPHTRKAYQVDLAQYAAYLADQGQPLVPSSPALVRGFLARQAGAAGAV 77 Query: 134 I--QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF------KSF 185 + L+++R L+++ VR+ NP +V PKR +E++ + Sbjct: 78 SLGRKLSALRSLYRFLVREGLAPGNPARAVASPKRPKRLPEVLPEEEVAALVETPDAATE 137 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVEL------- 237 + R E L SGLR S+ ++ L ++ K V Sbjct: 138 APLALRDRAFLELLYGSGLRVSELTGLDLEDLDLAGGLVRVLGKRNKERIVPFGAPAADA 197 Query: 238 ----PDGFMKLLAMTP---IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHG 288 DG +LA P + F+N ++ + + +G+ + H Sbjct: 198 LRRYLDGARPVLAAGPDHARAGDAVFLNFRGGRLTSRSVARRLDGWVLASGLPRHVHPHV 257 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 +R AT GA + G ++ + YT D RL Sbjct: 258 LRHCFATHLLGNGADLRGIQELLGHASLSTTQRYTH-LDWKRLAA 301 >gi|84490143|ref|YP_448375.1| site-specific recombinase/integrase [Methanosphaera stadtmanae DSM 3091] gi|84373462|gb|ABC57732.1| predicted site-specific recombinase/integrase [Methanosphaera stadtmanae DSM 3091] Length = 316 Score = 121 bits (304), Expect = 1e-25, Method: Composition-based stats. Identities = 42/280 (15%), Positives = 93/280 (33%), Gaps = 33/280 (11%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS-GDFDYRK---ITTKHIRSGVESR 126 + + +Y + N+ +++S D + D + + R + Sbjct: 11 FEDQVEDYILEMDIQGYSSNTLKTYKSILDNFYKFILSDRKIKDEKGMLRAFKRYLQYLK 70 Query: 127 KHTPSSAIQFL---TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM---- 179 + S ++ F++A Y ++ PKR + ++++ Sbjct: 71 REKEVSTNYIYLVTVVLKKFFEFAEIHIY------EEIKAPKRTKSLPKSLNEQEVYDLI 124 Query: 180 -QQFKSFWSEGSQP--------RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230 + + E + P +L L +GLR S+ + V + N +I+ + G Sbjct: 125 HAKDNEYDPEKTNPQNITRLRNKLILTLLYSTGLRVSELTKLKVTTIDENERTIRVRGKG 184 Query: 231 TIITVEL-----PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284 + + D + L + E F+N +++ + K A AG+ + Sbjct: 185 DKDRIVIFDEDTLDLIHEYLDKRGVENEYLFVNQRNTSLSSRYIQLMIKEYAKDAGITRR 244 Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 + H +R AT G + G + + YT Sbjct: 245 VTPHILRHSFATHLLKNGVDIRAIQQLLGHSNLSTTQIYT 284 >gi|257791164|ref|YP_003181770.1| integrase family protein [Eggerthella lenta DSM 2243] gi|317488103|ref|ZP_07946680.1| phage integrase [Eggerthella sp. 1_3_56FAA] gi|325832921|ref|ZP_08165594.1| phage integrase, N-terminal SAM domain protein [Eggerthella sp. HGA1] gi|257475061|gb|ACV55381.1| integrase family protein [Eggerthella lenta DSM 2243] gi|316912811|gb|EFV34343.1| phage integrase [Eggerthella sp. 1_3_56FAA] gi|325485786|gb|EGC88250.1| phage integrase, N-terminal SAM domain protein [Eggerthella sp. HGA1] Length = 323 Score = 121 bits (304), Expect = 1e-25, Method: Composition-based stats. Identities = 42/283 (14%), Positives = 92/283 (32%), Gaps = 32/283 (11%) Query: 74 LISEYRKSAH-WGSLAVNSRISFESYFDQI-----IRKSGDFDYRKITTKHIRSGVESRK 127 LI + + + +V++ ++ + + ++ + Sbjct: 24 LIDAFCHAMRVERNASVHTLRAYRIDLMDFARWACRERIDILAATHRQLRRYLGELDRAQ 83 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186 ++ ++ + L+++R F+W +P ++ PK+ DM + + + Sbjct: 84 YSRTTVNRRLSALRSFFRWLNVTGIADEDPASILQGPKQPKSLPHVIRASDMVKLLTVYG 143 Query: 187 ------------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTII 233 S ++ EFL G R S++ ++ +K K Sbjct: 144 KRDAAGREREQSSVDARNLALLEFLYACGARVSEASGLLAANVDFGSGQVKVFGKGSKER 203 Query: 234 TVELPDGFMKLLAMTPI----------GKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283 V L D + + + FF++ +M FK +AG++ Sbjct: 204 IVPLHDMAVSSMRAYATWARPLILRDRTCDYFFVSTRGNRMGTDAIRKMFKDALRQAGLD 263 Query: 284 --KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 S H +R AT D GA + G ++ + YT Sbjct: 264 ESLSPHDMRHTFATDLLDGGADLRSVQEMLGHASLSTTQIYTH 306 >gi|262202720|ref|YP_003273928.1| tyrosine recombinase XerD [Gordonia bronchialis DSM 43247] gi|262086067|gb|ACY22035.1| tyrosine recombinase XerD [Gordonia bronchialis DSM 43247] Length = 313 Score = 121 bits (304), Expect = 1e-25, Method: Composition-based stats. Identities = 48/260 (18%), Positives = 88/260 (33%), Gaps = 26/260 (10%) Query: 90 NSRISFESYFDQIIRK--SGDFDYRKITTKHI----RSGVESRKHTP---SSAIQFLTSM 140 + R E Y + +I + SG + + + R G E+ P SS + L + Sbjct: 35 SYRRDLERYQNYLIARGISGLAEVTESDIREFLVALRRGDEATGSRPLADSSIARTLVAT 94 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-----WSEGSQPRLA 195 R +AV + V+ + +V P+ + +++ + R Sbjct: 95 RRFHGFAVDEGVVSTDVAHAVRPPRPARRLPKSLPVDEVLAILEASSTGDHPRALRDRAL 154 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLAM------- 247 E L G R S++ V L +++ K G V + + Sbjct: 155 LELLYSCGARISEATSLDVDDLDTAARAVRLRGKGGKERIVPVGGPAADAIDAYLVRGRP 214 Query: 248 --TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGAT 303 F+N +++ + A +AG++K S H +R AT D GA Sbjct: 215 VLATRSAPALFLNARGGRLSRQSAWQVLVSAAERAGLDKAVSPHTLRHSFATHLLDGGAD 274 Query: 304 AHELMATYGWKTVDQAETYT 323 + G +V + YT Sbjct: 275 VRVVQELLGHASVTTTQVYT 294 >gi|29348151|ref|NP_811654.1| integrase, site-specific recombinase [Bacteroides thetaiotaomicron VPI-5482] gi|253569574|ref|ZP_04846984.1| integrase [Bacteroides sp. 1_1_6] gi|29340054|gb|AAO77848.1| integrase, site-specific recombinase [Bacteroides thetaiotaomicron VPI-5482] gi|251841593|gb|EES69674.1| integrase [Bacteroides sp. 1_1_6] Length = 293 Score = 121 bits (304), Expect = 1e-25, Method: Composition-based stats. Identities = 53/276 (19%), Positives = 104/276 (37%), Gaps = 24/276 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIR----KSGDFDYRKITTKHIRSGV---ES 125 LI + + + + + +++ Q+ + G FD ++ + IR + Sbjct: 2 LIKSFLDYLRYERNYSEKTVLAYGEDIKQLQEFAQEEYGKFDPLEVEGELIREWIVSLMD 61 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 R +T +S + L+S+R +K+ +RQ V ++P + PK K + +M + Sbjct: 62 RGYTSTSVNRKLSSLRSFYKYLLRQGEVTVDPLRKITGPKNKKPLPAFLKESEMDKLLDD 121 Query: 186 WS-----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPD 239 +G + RL +G+R S+ + + + +K T K + D Sbjct: 122 TDFGEGFKGCRDRLIIGVFYATGIRLSELIGLDDKDVDFSASLLKVTGKRNKQRLIPFGD 181 Query: 240 GFMKLL--------AMTPIGKETFFINNDKQKMNATQFSIWFKA-KATKAGVNK-SAHGV 289 +L+ P E FF+ D +++ K + A + K S H + Sbjct: 182 ELKELMLEYINVRNETIPERSEAFFVKEDGERLYKNLVYNLVKRNLSKVATLKKRSPHVL 241 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 R AT + A + G ++V E YT Sbjct: 242 RHTFATTMLNNDAELGAVKELLGHESVATTEIYTHA 277 >gi|300871744|ref|YP_003786617.1| tyrosine recombinase XerD [Brachyspira pilosicoli 95/1000] gi|300689445|gb|ADK32116.1| tyrosine recombinase, XerD [Brachyspira pilosicoli 95/1000] Length = 307 Score = 121 bits (304), Expect = 1e-25, Method: Composition-based stats. Identities = 40/287 (13%), Positives = 103/287 (35%), Gaps = 23/287 (8%) Query: 64 PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDY-----RKITTKH 118 R + L+ L+ E+ + A ++ S+ + I+ D + T + Sbjct: 6 KRIEANELENLLEEFADYLQTLNYAAHTINSYTKDLKEYIKFLEDNNIDFNDATHYTIRD 65 Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 + ++++K ++ + L+S++ +K+ +R Y ++++ PKR+ + + D Sbjct: 66 YFASLKNKKLKNATTSRHLSSIKKFYKYLIRNGYSDKTRIINMKSPKREEHIAKFLSLND 125 Query: 179 MQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT 234 + + E + ++ F+ GLR S+ + + +++ G+ + Sbjct: 126 IDKILEIDDENDFTIIRDKMMAIFMYAIGLRASELISIKLNMMHKGSTTLRILGKGSKVR 185 Query: 235 -VELPD-----------GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282 + L + F+N + ++ K A + Sbjct: 186 EIPLIPIIYDNWDLYMQKRAIIQREYGSNNNYLFVNRFGKPISDRSVRNSMKRLMRMANI 245 Query: 283 --NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 + S H +R AT + A + G +++ + YT + Sbjct: 246 SVDFSPHTLRHTFATHLLNNDAEIRGVQELLGHESISTTQRYTHVTN 292 >gi|77918422|ref|YP_356237.1| site-specific recombinase/integrase [Pelobacter carbinolicus DSM 2380] gi|77544505|gb|ABA88067.1| site-specific recombinase/integrase [Pelobacter carbinolicus DSM 2380] Length = 482 Score = 121 bits (304), Expect = 1e-25, Method: Composition-based stats. Identities = 61/339 (17%), Positives = 119/339 (35%), Gaps = 26/339 (7%) Query: 9 PFVTKERTRHGKIIY--YFRKGHGRRIRLPYPH---ESTFIPAYMSALTGSTPKREYINS 63 P + G + +R +++ P+ E + + + E + S Sbjct: 124 PGLHICVNMRGNKRWLFRYRLYGRKKVVAIGPYPSIEPPLAKQMANEMQRNLALGERVVS 183 Query: 64 PR---KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120 PR K+ T +Y + A + + + +QII K G+ +T K I+ Sbjct: 184 PRAQQKQQKTFGEFARKYLEHA--KQTKKSWKDDYNKLTNQIIPKWGEVPLTCLTPKEIQ 241 Query: 121 SGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVA--INPCLSVERPKRKTEGIRPWTK 176 + K ++A + + VL+ AV+ + NP V + + R + Sbjct: 242 GYLNQVKARTSGTNANRHYAVLNVLYNLAVKWGEIDPWKNPMPGVSKFRDNPGRTRYLSM 301 Query: 177 EDMQQFKSFWSE--GSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTI 232 E+ ++F + E G A LL++G R + ++ + + + + K G Sbjct: 302 EECKRFLAALEEAPGQLAACALRLLLFTGCRAGEVLKSKWEDVSMEGRTMLLPETKNGKS 361 Query: 233 ITVEL----PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--- 285 V L KL F + + K T F+ AG+ + Sbjct: 362 RVVHLNSLSLAEIEKLKDFRNPSNPYLFPGSSEDKPLGTVRKT-FEHALKLAGLQGTDVV 420 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R A++ A+ G + + + G +V E Y Sbjct: 421 IHTLRHTHASLLANLGESLETIKVSLGHSSVKMTERYAH 459 >gi|254492199|ref|ZP_05105373.1| tyrosine recombinase XerC [Methylophaga thiooxidans DMS010] gi|224462524|gb|EEF78799.1| tyrosine recombinase XerC [Methylophaga thiooxydans DMS010] Length = 302 Score = 121 bits (304), Expect = 1e-25, Method: Composition-based stats. Identities = 38/269 (14%), Positives = 82/269 (30%), Gaps = 22/269 (8%) Query: 85 GSLAVNSRISFESYFDQII------RKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLT 138 L+ ++ ++ Q+I S + + + + + + + L+ Sbjct: 20 RRLSHHTVNNYRRDLTQLIDFCQGQELSHWHSVKPADLRQFIAFLHRKGLASRTIQRMLS 79 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRL 194 + R L+++ +RQ NP +V+ PK + + M + + R Sbjct: 80 ATRSLYQYLIRQGLAETNPAQAVQAPKAEKRLPSTLDVDQMNALLDQTQADTFVACRDRA 139 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------ELPDGFMKLL 245 E SGLR ++ ++ + + G V L D K Sbjct: 140 IMELFYSSGLRLAELATLDLRDIDFGDQLVHVTGKGNKDRVCPVGAVAIKALQDWLEKRD 199 Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGAT 303 + FI +++ K G++ H +R A+ ++ Sbjct: 200 QTGFFDQPAVFITQQGRRLGMRSIQKRLSFWGKKQGISDRVHPHRLRHAFASHMLESSGD 259 Query: 304 AHELMATYGWKTVDQAETYTKGADRIRLG 332 + G + + YT D L Sbjct: 260 LRAVQELLGHSDISTTQIYTH-VDFQHLA 287 >gi|283782472|ref|YP_003373227.1| tyrosine recombinase XerC [Pirellula staleyi DSM 6068] gi|283440925|gb|ADB19367.1| tyrosine recombinase XerC [Pirellula staleyi DSM 6068] Length = 323 Score = 121 bits (304), Expect = 1e-25, Method: Composition-based stats. Identities = 42/268 (15%), Positives = 92/268 (34%), Gaps = 31/268 (11%) Query: 88 AVNSRISFESYFDQIIRKSGDFD----YRKITTKHIRSGVESRKHTPSSAIQFLTSMRVL 143 + + R S D + + G + + S + + +S + L S+R Sbjct: 23 SKSYREDLTSLADYLTQAYGREPKPSEITPLDLRGYVSALHEAGYAKTSIARRLASLRTF 82 Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----QQFKSFWSEGSQPRLAFEFL 199 +K+A R+ NP + P++ + +++ + + G + R E L Sbjct: 83 YKFAQREGMADSNPAKPLRNPRKDRKLPHFLAGDELGKLLEAPPADDPAGLRDRAMLETL 142 Query: 200 LYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-ELPDGFMKLLA------------ 246 +GLR S+ + L + ++ + G+ + L ++ + Sbjct: 143 YSAGLRVSELVGMNDEDLDLDEGVVRIRGKGSKERLAPLGSFALRAIKKWLAHRKLASIS 202 Query: 247 -------MTPIGKET-FFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATI 296 + G T F N +++ + + G++ + H +R AT Sbjct: 203 VSSTRKSASKAGHGTPVFTNKFGKRLTTRSVARMLEKYLKLTGLDLRTTPHTLRHTFATH 262 Query: 297 SADAGATAHELMATYGWKTVDQAETYTK 324 D GA + G K++ + YT Sbjct: 263 LLDRGADIRSVQELLGHKSLVTTQIYTH 290 >gi|253699136|ref|YP_003020325.1| tyrosine recombinase XerC [Geobacter sp. M21] gi|251773986|gb|ACT16567.1| tyrosine recombinase XerC [Geobacter sp. M21] Length = 293 Score = 121 bits (304), Expect = 1e-25, Method: Composition-based stats. Identities = 43/260 (16%), Positives = 88/260 (33%), Gaps = 21/260 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFD-------YRKITTKHIRSGVESRKHTPSSAIQFL 137 +++ ++ ++ S +Q + + + + + SS + L Sbjct: 16 RNVSPHTLAAYRSDLEQFLSFLAKEREEPRAEEVDHLAIRRYLAQLHKGCAK-SSIGRKL 74 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPR 193 +++R L+++ +R+ + NP V PKR+ + + + + GS + R Sbjct: 75 SAIRALYRYLMREGKLEKNPAELVSTPKREKRLPFHLNIDQVSALVTAPAGGSELPLRDR 134 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPD----GFMKLL--A 246 E L G+R S+ V + + K G V + L Sbjct: 135 AILETLYSCGIRVSELTGMNVGDMDLAAGLARVMGKGGKERLVPVGSCAGSALAAYLAER 194 Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKAT-KAGVNK-SAHGVRKFSATISADAGATA 304 P E +N ++ + A A + K S H +R AT + GA Sbjct: 195 ADPGPAEPLILNARGGRLTRRSVARIVDAHMLMIATMRKVSPHTLRHTFATHLLEGGADL 254 Query: 305 HELMATYGWKTVDQAETYTK 324 + G ++ + YT Sbjct: 255 RAIQELLGHASLSTTQKYTH 274 >gi|213691797|ref|YP_002322383.1| tyrosine recombinase XerD [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213523258|gb|ACJ52005.1| tyrosine recombinase XerD [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320457891|dbj|BAJ68512.1| recombinase [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 308 Score = 121 bits (304), Expect = 1e-25, Method: Composition-based stats. Identities = 42/271 (15%), Positives = 90/271 (33%), Gaps = 31/271 (11%) Query: 85 GSLAVNSRISFE----SYFDQIIRKSGDFD--YRKITTKHIRSGVESRKHTPSSAIQFLT 138 LA + ++E Y D + + K + + ++ + S + L Sbjct: 20 RGLATATVTAYESDIAKYIDWLETRGIHEPDAITKQDVEDYIAALDQAGESARSKARRLA 79 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG-------SQ 191 S+ ++A+ Q V + +V+ PK + T +++ + + G + Sbjct: 80 SIHEFHRFALGQHAVTADVSAAVKAPKGASTLPDVLTVDEVTRLLDTAAVGGSTDPVVLR 139 Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPD----------- 239 + EF+ +G R S++ + + + + K V L Sbjct: 140 DKALLEFMYATGCRVSEATGTNLDDIDLDEHIARLMGKGSKQRLVPLGSYACRAITAYLN 199 Query: 240 ----GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFS 293 + + + F+N ++++ KA +AG+ K H +R Sbjct: 200 AGRGELERRSSAKIPERRALFLNKRGKRISRQSVWEIVKATGERAGITKPLHPHTLRHSF 259 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTK 324 AT GA + G +V + YT Sbjct: 260 ATHLIQGGADVRTVQELLGHASVTTTQIYTH 290 >gi|169826684|ref|YP_001696842.1| hypothetical protein Bsph_1102 [Lysinibacillus sphaericus C3-41] gi|168991172|gb|ACA38712.1| conserved hypothetical protein [Lysinibacillus sphaericus C3-41] Length = 238 Score = 121 bits (304), Expect = 1e-25, Method: Composition-based stats. Identities = 37/211 (17%), Positives = 81/211 (38%), Gaps = 10/211 (4%) Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 PSS + ++ LF+W+ + Y NP ++ PK + ++ +++ + Sbjct: 21 KPSSLGHRIRCVKSLFRWSHEEGYTLKNPAAKLKEPKLGKRIPKFLSEVEIEHLREACQT 80 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVE----LPDGFMK 243 + + FEF+ +G R + + + + + I K V + Sbjct: 81 -TMEKALFEFMYSTGCRIGEVVKLNREDIDFQSNSVIVQGKGDKEREVYFNTRCSIWLKR 139 Query: 244 LLAMTPIGKETFFINND--KQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISAD 299 L + FI + K++M+ K + +A + KS H +R AT + Sbjct: 140 YLDEREDREPCLFITDRRPKRRMSIDNLRYIIKRISNRASIKKSIHPHQLRHSYATHMIN 199 Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIR 330 GA + + G + + + Y + + ++R Sbjct: 200 NGAPIDVIQSLLGHEKSETTKIYAQLSGKLR 230 >gi|265753988|ref|ZP_06089343.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] gi|263235702|gb|EEZ21226.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] Length = 390 Score = 121 bits (304), Expect = 1e-25, Method: Composition-based stats. Identities = 49/221 (22%), Positives = 80/221 (36%), Gaps = 15/221 (6%) Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV---ERPKRKTEGIRPWTKE 177 +E R + ++A ++L AVRQ + NP + ER + K T E Sbjct: 162 KYIEPRPISQNTASRYLGMFSTTLNNAVRQGIIRNNPMKELDAKERIQPKDGKKEYLTIE 221 Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL------QNNIFSIKTQKTGT 231 +++ + S + + AF F ++GLR SD + H+ + ++ QKT Sbjct: 222 ELKALMATDSYRPEVKQAFIFACFTGLRLSDMYKLAPIHIFKTPDGKGEYIDMEMQKTEK 281 Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289 + + L + + L FF T + A AGV K S H Sbjct: 282 PVIIPLSEEAKRWLPKPKGITTPFFDI----PTTQTVIGRALRKWAEAAGVEKHISFHCS 337 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 R T+ GA G + E Y K D+ + Sbjct: 338 RHTFGTMMLTLGADLFTTSKLMGHTNIQTTEIYAKIVDKKK 378 >gi|71275473|ref|ZP_00651759.1| Phage integrase [Xylella fastidiosa Dixon] gi|71902062|ref|ZP_00684102.1| Phage integrase [Xylella fastidiosa Ann-1] gi|71163773|gb|EAO13489.1| Phage integrase [Xylella fastidiosa Dixon] gi|71728173|gb|EAO30364.1| Phage integrase [Xylella fastidiosa Ann-1] Length = 339 Score = 121 bits (304), Expect = 1e-25, Method: Composition-based stats. Identities = 61/333 (18%), Positives = 112/333 (33%), Gaps = 28/333 (8%) Query: 7 LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66 +P F + + + G + YY+ G R P Y A+ + E+ Sbjct: 11 IPRFRVRPQ-KSGVVYYYYDHGGKPRKETPLG------RDYGLAI-KRWAELEHAQITPA 62 Query: 67 KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVE 124 T + + YR + A N++ +++ D + I +IR ++ Sbjct: 63 IAVTFRHVAEHYRAEVI-PTKAYNTQRVEHRCLAPLLKFFDDPPAPFEAIKPVNIRQYLD 121 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVA-INPCLSVERPKRKTEGIRPWTKEDMQQFK 183 R A + ++ L+ WA + NPC + R K + D ++ Sbjct: 122 WRTSKV-IANREVSVFSHLWNWARSKGITDLPNPCGGIRRNKATGRDVYV----DDTTYR 176 Query: 184 SFWSEGSQP-RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242 + + Q R A + +G R SD +H+ N I KTG + + + Sbjct: 177 AVYQAADQTLRDAMDLAYLTGQRVSDVVSMDERHIVNGALEICQAKTGAKLAITVTGELA 236 Query: 243 KLLAMTPIGKE-------TFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKF 292 L+ K ++ +++ T F AG+ K +R Sbjct: 237 VLIKRIFDRKRGMKLRSTRLIVDAKGLELSRTGLRYRFDKARVAAGIAKEIFQFRDLRAK 296 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKG 325 +AT AD + A G +V E Y + Sbjct: 297 AATDKADLAGDIRQAQAQLGHASVTMTEHYVRK 329 >gi|256840355|ref|ZP_05545863.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|256737627|gb|EEU50953.1| conserved hypothetical protein [Parabacteroides sp. D13] Length = 393 Score = 121 bits (304), Expect = 1e-25, Method: Composition-based stats. Identities = 56/294 (19%), Positives = 117/294 (39%), Gaps = 27/294 (9%) Query: 62 NSPRKKPTTLKWLISEYRK-SAHWGSLAVNSRISFESYFDQIIRKSGDFDY--RKITTKH 118 + +K TL + ++ K +A ++ ++ + + DQ + G ++ + + + Sbjct: 86 DKVKKSRMTLTKWMDDFVKYNAELSESSMKTKRNTHARIDQYLLHIGKPEFLLKDVDKEF 145 Query: 119 IRSGVESRKH-TPSSAIQFLTSM--RVLFKW-------AVRQEYVAINPCLSVE---RPK 165 + + K T + + L++ R+ + AVR + NP L +E +P+ Sbjct: 146 CKGFITFLKTCTYNDGKKQLSTTTCRMFVNYFGSSLAKAVRDGLIEQNPFLLLEAKEKPQ 205 Query: 166 RKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL------QN 219 ++ T E++++ + + AF F ++GLR SD + + Sbjct: 206 KRVAEREFLTIEEIKKVMNTPCRYELVKKAFLFSCFTGLRYSDMKALNWSEIHKAADGKT 265 Query: 220 NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK 279 KT +T+ L + K + G + F N + +T + K Sbjct: 266 EYIDHIQVKTKDRVTIPLSEETKKWMPKREEGIDNIFHNLT---ITSTTVEVVLKEWMEA 322 Query: 280 AGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 AG+ K + H R +AT+ GA+ + + G K++ E Y K D+ +L Sbjct: 323 AGITKHITYHCSRHTAATMLLTLGASIYVVSKILGHKSIKMTEIYAKIVDKKKL 376 >gi|94986556|ref|YP_594489.1| site-specific recombinase XerC [Lawsonia intracellularis PHE/MN1-00] gi|94730805|emb|CAJ54167.1| Site-specific recombinase XerC [Lawsonia intracellularis PHE/MN1-00] Length = 313 Score = 121 bits (304), Expect = 1e-25, Method: Composition-based stats. Identities = 45/272 (16%), Positives = 96/272 (35%), Gaps = 32/272 (11%) Query: 85 GSLAVNSRISFESYFDQI---IRKSGDF--DYRKITTKHIRSGVES---RKHTPSSAIQF 136 ++ ++ ++ Q +R G I KHI+ S +K T +S + Sbjct: 18 KGFSLATQDAYRRDISQFEVYLRTIGLTLEHPEHINKKHIQQFSASLYYKKLTRTSIARK 77 Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS------------ 184 L ++R LF++ ++ ++ NP + V PK+ + + + Sbjct: 78 LAALRSLFRYLLKTHHIKDNPAVGVHNPKQHVKYPEILNVDQVFLLLKGANNILKTSHTG 137 Query: 185 -FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT--------- 234 + + E L SGLR S++ V ++ ++ G Sbjct: 138 LELAIAHRNNALLELLYGSGLRISEALCLNVSDIRTEDGFVRVIGKGNKERLAPLSDTSI 197 Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKF 292 V L + + +G++ F+ ++++ Q + +AG+ + H +R Sbjct: 198 VALEEWLAIRHMVATLGEQALFVGVRGKRLHRRQTIRILEELCLQAGLPLTTAPHTLRHS 257 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTK 324 AT + GA + G + + YT Sbjct: 258 FATHLLEGGANLRAVQELLGHARLSTTQRYTH 289 >gi|30248355|ref|NP_840425.1| phage integrase domain/SAM domain-containing protein [Nitrosomonas europaea ATCC 19718] gi|30138241|emb|CAD84249.1| Phage integrase:Phage integrase N-terminal SAM-like domain [Nitrosomonas europaea ATCC 19718] Length = 321 Score = 121 bits (304), Expect = 1e-25, Method: Composition-based stats. Identities = 40/283 (14%), Positives = 96/283 (33%), Gaps = 32/283 (11%) Query: 74 LISEYRKS-AHWGSLAVNSRISFESYFDQI----------IRKSGD-------FDYRKIT 115 L+SEY A SL++ ++ S+ + ++G Sbjct: 15 LLSEYLAYLASTRSLSLLTQHSYRRDLVALVCCIAAQHQSEHENGHEVTDASLTRLHSHD 74 Query: 116 TKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175 +H + + + S + L++ R +++ +R + NPC + PK + + Sbjct: 75 IRHFIAHLHHGGLSGRSLARMLSAWRGFYRYLMRHHHHTENPCQDIRVPKSPRKLPHALS 134 Query: 176 KEDMQQFKSFWSE---GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232 ++ Q +F ++ FE SGLR ++ R + + ++ G+ Sbjct: 135 PDEAAQLLAFDPADALATRDLAMFELFYSSGLRLAELTRLQPTDIDFSEGIVRVTGKGSK 194 Query: 233 ITV-----ELPDGFMKLLAM----TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283 + L + G+ F++ Q+++ ++ +A ++ Sbjct: 195 TRIVPVGEPALRALQAWLPLRSAWLTSGETALFLSRHGQRIHPRTIAVRLHQRARLQNLD 254 Query: 284 KS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R A+ + + G ++ + YT Sbjct: 255 DRVHPHALRHSFASHLLQSSGDLRAVQEMLGHSSIRSTQVYTH 297 >gi|85708393|ref|ZP_01039459.1| integrase [Erythrobacter sp. NAP1] gi|85689927|gb|EAQ29930.1| integrase [Erythrobacter sp. NAP1] Length = 295 Score = 121 bits (304), Expect = 1e-25, Method: Composition-based stats. Identities = 44/265 (16%), Positives = 90/265 (33%), Gaps = 20/265 (7%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLF 144 A N+ ++ D GD D + + + PS+ + +++R F Sbjct: 16 RGAAANTLAAYRRDLDGAEEALGDLD-KASRAAVAKLSAQWASLAPSTVARKASALRQFF 74 Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW--------SEGSQPRLAF 196 +AV + + +P ++ +P+ + + + E ++ + Sbjct: 75 GFAVDEGWREDDPSGALPKPRTRRPLPKILSHEAVETLLQRAELEANSGQPTALRQLALL 134 Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLL------AMTP 249 E L SGLR ++ + + + I K G V + + + L + Sbjct: 135 EMLYGSGLRATELVSLPLVSVPRDAPLITVKGKGGQARMVPVSERAKEALAEWVKVRPSD 194 Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHE 306 F + + ++ + K A +A ++ S H +R AT + GA Sbjct: 195 PPTGHLFPSRGGKHLSRVRLFQILKELAVRADLDPAGISPHVLRHAFATHLLEGGADLRV 254 Query: 307 LMATYGWKTVDQAETYTKGADRIRL 331 L G + + YT D RL Sbjct: 255 LQTLLGHADIATTQIYTH-VDAARL 278 >gi|222474757|ref|YP_002563172.1| Tyrosine recombinase (xerD) [Anaplasma marginale str. Florida] gi|255003855|ref|ZP_05278656.1| Tyrosine recombinase (xerD) [Anaplasma marginale str. Virginia] gi|222418893|gb|ACM48916.1| Tyrosine recombinase (xerD) [Anaplasma marginale str. Florida] Length = 312 Score = 121 bits (304), Expect = 1e-25, Method: Composition-based stats. Identities = 43/283 (15%), Positives = 103/283 (36%), Gaps = 34/283 (12%) Query: 87 LAVNSRISFESYFDQIIRKSGDFDYRKITT-----KHIRSGVESRKHTPSSAIQFLTSMR 141 ++ N+ S+ S + + G + R + + + SR ++P++ + ++++R Sbjct: 20 VSPNTSSSYRSDLENLAEFLGRRNLRMVDASAADLRAYVRSLNSRGYSPATVARRISAIR 79 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK-----SFWSEGSQPRLAF 196 L+ + + +P +++ K + T +++ + EG + Sbjct: 80 GLYGFLYGDRIIDGDPAANLDSCKLGRPLPKVLTVDEVDKLLCAAGSDLSVEGRRTAAIV 139 Query: 197 EFLLYSGLRCSDSCRAGVQHLQ--------NNIFSIKTQKTGTIITVELPDGFMKLLAMT 248 L SG+R S+ G ++ + + K G + L + + + Sbjct: 140 NILYSSGVRISELINLGFYDIESMLKEQRSDVGHLVIKGKAGRERLILLNEVAIASIVAY 199 Query: 249 PIGKETFFINNDKQKM------------NATQFSIWFKAKATKAGVN---KSAHGVRKFS 293 ++ F + + + + KA A AGV+ S H +R Sbjct: 200 LAVRDHFIVGQKSESRWLFPGAKFDQCISRQRVGQLLKALAIVAGVDPKRISPHKLRHSF 259 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKN 335 AT + G+ + G ++ + YT A DR++ ++ Sbjct: 260 ATHLLNNGSNVVFIQKMLGHASLSTTQIYTYVANDRLKEALQT 302 >gi|319654979|ref|ZP_08009052.1| hypothetical protein HMPREF1013_05674 [Bacillus sp. 2_A_57_CT2] gi|317393333|gb|EFV74098.1| hypothetical protein HMPREF1013_05674 [Bacillus sp. 2_A_57_CT2] Length = 258 Score = 121 bits (304), Expect = 1e-25, Method: Composition-based stats. Identities = 46/232 (19%), Positives = 91/232 (39%), Gaps = 11/232 (4%) Query: 102 IIRKSGDFDYRKITTKHIRSGVESRKH--TPSSAIQFLTSMRVLFKWAVRQEYVAINPCL 159 +I+ GD ITT+ I+ + SS + ++ LFKWA ++YV+INP Sbjct: 13 LIKYFGDIKITDITTESIKLYLGEVAAELKASSLCHRIRFIKSLFKWAQEEKYVSINPVS 72 Query: 160 SVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN 219 S++ PK ++ + T+E+++ + + + FEF+ +G R + + Sbjct: 73 SIKEPKPESRIPKFLTEEEIELLREACKT-TFEKALFEFMYSTGYRIGEVVNLDKHSINM 131 Query: 220 ---NIFSIKTQKTGTIITV--ELPDGFMKLLAMTPIGKETFFINNDK-QKMNATQFSIWF 273 ++ K + + + ++ F+ +M+ Q Sbjct: 132 AEQSVIVFGKGKKEREVYINTRCSIWLKRYREERADDQQALFVTIRAPHRMSIAQMRYVI 191 Query: 274 KAKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 K + +AG+NK H +R AT + GA + G + + Y Sbjct: 192 KQISKRAGINKCIYPHQLRHSYATTLINNGAPLEVIQNLMGHEKSETTRVYA 243 >gi|329113917|ref|ZP_08242684.1| Shufflon-specific DNA recombinase [Acetobacter pomorum DM001] gi|326696664|gb|EGE48338.1| Shufflon-specific DNA recombinase [Acetobacter pomorum DM001] Length = 392 Score = 121 bits (304), Expect = 2e-25, Method: Composition-based stats. Identities = 61/327 (18%), Positives = 106/327 (32%), Gaps = 26/327 (7%) Query: 19 GKIIY--YFRKGHGRRIRLPYPHES--------TFIPAYMSALTGSTPKREYINSPRKKP 68 G+ IY FR G R PH + GS P + + Sbjct: 49 GRKIYLAQFRAGGRIRRVNIGPHGPLTPDQARTEAMKHLSDVRLGSDPGAQRDR--LRAA 106 Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESRK 127 T+K + +++ + D II K G IT + + K Sbjct: 107 ATMKEFGKRFLDEHVASHCKPSTQYEYRRCVDLFIIPKLGTLKVIDITRADVVELHQGLK 166 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAI--NPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 TP A + L + ++F A + NPC V+R K R T +++ + Sbjct: 167 ETPYQANRVLGVLSIMFTLADTWGVRSDGSNPCWKVKRYKEVKRE-RYLTPDELARLGKV 225 Query: 186 WSEG---SQPRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQKTGTIITVELPDG 240 E + LL +G R + +++ + + KTG + V + Sbjct: 226 LREAEGEPEAAYCIRLLLLTGCRLGEIQTLKWEYVDARAGVLRLPDSKTGAKV-VPIGKA 284 Query: 241 FMKLLAMTPI--GKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATIS 297 + +LA P G + + W + +A +AG++ H +R A+ + Sbjct: 285 ALDVLADIPRIEGNPYVITGKMEGQYLTDTQKPWRRLRA-RAGLDTLRIHDLRHSFASDA 343 Query: 298 ADAGATAHELMATYGWKTVDQAETYTK 324 GA + G V Y Sbjct: 344 LQLGADLTMIGRLLGHTQVQTTARYAH 370 >gi|262038210|ref|ZP_06011604.1| tyrosine recombinase XerD [Leptotrichia goodfellowii F0264] gi|261747791|gb|EEY35236.1| tyrosine recombinase XerD [Leptotrichia goodfellowii F0264] Length = 315 Score = 121 bits (304), Expect = 2e-25, Method: Composition-based stats. Identities = 47/276 (17%), Positives = 93/276 (33%), Gaps = 22/276 (7%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYR-KITTKHIRSGVESRKHTPSS 132 I E+ + + N+ +E K + SR+ +S Sbjct: 34 IKEFSDYLSFEKGSSKNTVAGYERDLKIFFDYIQKSATDIKEEDIYEYIEEISRELKRNS 93 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS---FWSEG 189 ++ + S+R +K+ + V +P ++ KR+ ++++ EG Sbjct: 94 VLRKIASIRTFYKFCYLNKMVKEDPTGMIKSLKREKRLPEVLNLKEVKTIIDNIGHTPEG 153 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT--QKTGTIITVELPDGFMK---- 243 + RL +FL+ +G R S+ ++ ++N + K V + + Sbjct: 154 MRDRLIIKFLIATGARVSEILNLNIKDVENQGYEFIKVLGKGSKYRIVPIYESLENEIKD 213 Query: 244 ----LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATIS 297 + +F + D + F K A AG+ K+ H R AT+ Sbjct: 214 YISNYRPKLKGSESSFKLFPDTR---RENFWKRLKKTAKDAGIEKNVYPHIFRHSVATVL 270 Query: 298 ADAGATAHELMATYGWKTVDQAETYTK--GADRIRL 331 GA + G + E YT +D R+ Sbjct: 271 LSNGADIRIVQEILGHANISTTEIYTHVEKSDLKRI 306 >gi|317504008|ref|ZP_07962015.1| tyrosine recombinase XerD [Prevotella salivae DSM 15606] gi|315664868|gb|EFV04528.1| tyrosine recombinase XerD [Prevotella salivae DSM 15606] Length = 293 Score = 121 bits (304), Expect = 2e-25, Method: Composition-based stats. Identities = 43/277 (15%), Positives = 95/277 (34%), Gaps = 28/277 (10%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFD----YRKITTKHIRSGVESRKH 128 +I+E+ + + + + ++ G+ D ++ + + IR +ES Sbjct: 2 MINEFLNYLKFERNRSDLTIKNYGEDLRAFEEFYGNLDSRLSWKSVDSDVIRDWMESMMD 61 Query: 129 TPSSA---IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 ++A + L+++R +++A+ ++ V NP V PK+ + + +M + Sbjct: 62 KGNNATSINRRLSALRSFYRFALTRKLVDKNPVHGVTGPKKGRPLPQFLKENEMDRLLDA 121 Query: 186 WS-----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPD 239 S E + R +G+R S+ + +N T K + + Sbjct: 122 ESWTESFEDVRDRTVIMTFYETGIRLSELIGLDDSMVDFSNRQLKVTGKRNKQRVIPFGE 181 Query: 240 GFMKLLA--------MTPIGKETFFINNDKQKMN----ATQFSIWFKAKATKAGVNKSAH 287 + L E F++ Q+M T ++ H Sbjct: 182 ELLVTLRDYMKCRDKEVNRQSEALFVSTKGQRMTSSQVREGVKRNLSKVCTLK--KRTPH 239 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 +R AT + A + G +++ E YT Sbjct: 240 VLRHTFATAMLNNKAGIESVKKLLGHESLSTTEIYTH 276 >gi|154686030|ref|YP_001421191.1| site-specific tyrosine recombinase XerC [Bacillus amyloliquefaciens FZB42] gi|154351881|gb|ABS73960.1| CodV [Bacillus amyloliquefaciens FZB42] Length = 305 Score = 121 bits (304), Expect = 2e-25, Method: Composition-based stats. Identities = 39/276 (14%), Positives = 95/276 (34%), Gaps = 27/276 (9%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV------ESRK 127 L EY + + + + +++ + ++ + + + Sbjct: 11 LFVEYLQIE--KNYSQYTIVNYVNSIEEFGMFLHAQNINGMKEAAYHDVRIFLTEAYEKG 68 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-- 185 + + + ++++R +K+ +R++ V NP V PK++ + ++++++ + Sbjct: 69 LSRKTISKKISALRSFYKFLMREKLVEENPFQLVHLPKQEKRIPKFLYEKELEELFAVSD 128 Query: 186 --WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI----------- 232 G + + E L +G+R S+ C V L + ++ G Sbjct: 129 RSQPSGMRDQALLELLYATGMRVSECCTLTVGDLDLFMDTVLVHGKGKKQRYIPFGSYAR 188 Query: 233 --ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG--VNKSAHG 288 + + + G LL + F+N + A KA ++ H Sbjct: 189 DALELYINSGRQCLLEKAKEPHDVLFVNQRGGPLTARGIRYILSGLVKKASGTLHIHPHM 248 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 +R AT + GA + G + + YT Sbjct: 249 LRHTFATHLLNEGADLRSVQELLGHSNLSSTQIYTH 284 >gi|89895297|ref|YP_518784.1| hypothetical protein DSY2551 [Desulfitobacterium hafniense Y51] gi|89334745|dbj|BAE84340.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 298 Score = 121 bits (304), Expect = 2e-25, Method: Composition-based stats. Identities = 43/272 (15%), Positives = 93/272 (34%), Gaps = 22/272 (8%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIR----KSGDFD-------YRKITTKHIRSGV 123 +S + + + ++ +++ Q + G+ + + Sbjct: 7 LSLFDGHLKTQNRSQHTLMAYHKDLIQFFEFAARELGEEPEKVTVDQVDIYIVRSFLGEM 66 Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 R S + L+++R FK+ R+ + NP + PK + + E++ + Sbjct: 67 TERGLERKSMARKLSALRAFFKFLCREGILQKNPIQRIATPKLGRKLPHFLSLEELDRLI 126 Query: 184 SFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVEL- 237 G++ ++ E L SGLR S+ + + ++ + G V L Sbjct: 127 RTPDCATLLGARDQVILELLYGSGLRVSELADLNCRDIDEGTSLLRVRGKGNKERIVPLT 186 Query: 238 ---PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKF 292 + + L M +E +N +++ A +AG+ + H +R Sbjct: 187 HYALEAARQYLEMREDKQEALLLNYQGTRLSVRSIRRILDGLALEAGLSQHLHPHMLRHS 246 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTK 324 AT D GA + G + + YT Sbjct: 247 FATHLLDGGADLRSVQELLGHAKLSSTQIYTH 278 >gi|304384441|ref|ZP_07366845.1| tyrosine recombinase XerC [Prevotella marshii DSM 16973] gi|304334461|gb|EFM00750.1| tyrosine recombinase XerC [Prevotella marshii DSM 16973] Length = 301 Score = 121 bits (304), Expect = 2e-25, Method: Composition-based stats. Identities = 44/277 (15%), Positives = 98/277 (35%), Gaps = 28/277 (10%) Query: 74 LISEYRKSAHW-GSLAVNSRISFE---SYFDQIIRKSG-DFDYRKITTKHIRSGVESRKH 128 ++ ++ + + + S++ F+ I+ G D + + IR +ES Sbjct: 8 MVDQFLSYLQYEKRYSPRTVQSYDEDLKEFEAYIKVQGNDLSWHSVDADVIRGWMESMMD 67 Query: 129 T---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 ++ + L+++R +++++ + V+ +P +V PK++ + + +M + Sbjct: 68 KGNVATTINRRLSALRSFYRFSLSRNLVSHDPAHAVVGPKKEKPLPQFVKETEMDELFDK 127 Query: 186 WSEGS-----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPD 239 G + R SG+R S+ V + ++ T K + + Sbjct: 128 NRWGDTFKDVRARTILLTFYSSGIRVSELTGLHVSDIDFASSELRVTGKRNKQRVIPFGE 187 Query: 240 GFMKLLAM--------TPIGKETFFINNDKQKMNATQFSIWFKAK----ATKAGVNKSAH 287 + L + FI + M +Q K T +S H Sbjct: 188 ELAEQLVRYLAIREVTAGYDTDALFITEKGRPMTMSQVQYEVKKYLGRVCTLK--KRSPH 245 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 +R AT + GA + G +++ E YT Sbjct: 246 VLRHTFATAMLNHGAGLESVKKLLGHESLSTTEIYTH 282 >gi|187250446|ref|YP_001874928.1| integrase family protein [Elusimicrobium minutum Pei191] gi|186970606|gb|ACC97591.1| Integrase family protein [Elusimicrobium minutum Pei191] Length = 291 Score = 121 bits (304), Expect = 2e-25, Method: Composition-based stats. Identities = 44/262 (16%), Positives = 92/262 (35%), Gaps = 23/262 (8%) Query: 85 GSLAVNSRISFESY---FDQIIRKSGDFD--YRKITTKHIRSGVESRKHTPSSAIQFLTS 139 L+ N+ ++ + F ++ R ++ + +P S + + Sbjct: 14 RQLSKNTIYAYTNDVGDFFAFCEENNTAPQNVRPDFIDEYIYHLKQKGLSPKSVFRKTQA 73 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS---EGSQPRLAF 196 ++ +K+ + + +PC + PK + TKE++ + SF + Sbjct: 74 VKSFYKYLIINGDIKEDPCRFLLSPKLTQKIPETLTKEEISRLLSFPPKTFAEIRTLTIL 133 Query: 197 EFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET 254 E GLR S+ ++ +L++ + K + + D +K+L + +E Sbjct: 134 ELFYACGLRVSELVSLRIESVNLKDKWV-LAYGKGAKQRFIPIHDRAVKVLEIYLSEREK 192 Query: 255 F----------FINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGA 302 + FIN + +K++ AG+ +S H R AT GA Sbjct: 193 YLKGKESASEIFINKNGKKISRMSVWKDVNDLGRLAGIERSLHPHLFRHTFATHLLIGGA 252 Query: 303 TAHELMATYGWKTVDQAETYTK 324 L G + + YT Sbjct: 253 DLRSLQEMLGHADLQTTQIYTH 274 >gi|89898494|ref|YP_515604.1| site-specific tyrosine recombinase XerC [Chlamydophila felis Fe/C-56] gi|123763207|sp|Q253S9|XERC_CHLFF RecName: Full=Tyrosine recombinase xerC gi|89331866|dbj|BAE81459.1| integrase/recombinase [Chlamydophila felis Fe/C-56] Length = 312 Score = 121 bits (304), Expect = 2e-25, Method: Composition-based stats. Identities = 37/238 (15%), Positives = 81/238 (34%), Gaps = 23/238 (9%) Query: 108 DFDYRKITTKHIR----SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER 163 + + T +R ++ K + + L++++ + ++ + +P ++ Sbjct: 60 NLPFSLFTKDAVRLYILELMQENKAK-RTIKRRLSAIKSFSHYCLKHRILLEDPTETIHG 118 Query: 164 PKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRA-GVQ-HL 217 P+ E P T E ++ + G + R E SGLR S+ Sbjct: 119 PRLPKELPSPITYEQVEILMATPDLSKYTGLRDRCLLELFYSSGLRISEIVSLNHWDIDF 178 Query: 218 QNNIFSIKTQKTGTIITVELPDGFMKLL---------AMTPIGKETFFINNDKQKMNATQ 268 +N+ I+ K + + + L A + F+N ++ Sbjct: 179 NSNLIRIR-GKGKKERIIPITTLAAQWLKQYLNHPERAGVAKDSQAIFLNCFGTRLTTRS 237 Query: 269 FSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 F+ +G+ N + H +R AT + G + A G +++ YT Sbjct: 238 IDRKFQKYLRLSGLSGNITPHTIRHTIATHWLENGMDLKTIQALLGHSSLETTTIYTH 295 >gi|228908344|ref|ZP_04072189.1| DNA integration/recombination/invertion protein [Bacillus thuringiensis IBL 200] gi|228851385|gb|EEM96194.1| DNA integration/recombination/invertion protein [Bacillus thuringiensis IBL 200] Length = 369 Score = 121 bits (304), Expect = 2e-25, Method: Composition-based stats. Identities = 47/312 (15%), Positives = 109/312 (34%), Gaps = 38/312 (12%) Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVE 124 TLK ++ + + S+ ++ ++++ + +I G K+ HI+ + Sbjct: 60 PSKVTLKDYLNHWLEIKS-MSIEKSTFAGYKAFINQHVIPSIGIVALHKLNVIHIQKCYK 118 Query: 125 SRKHTPSSAIQFLTSMRVL---FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 + + L R+L AV+Q ++ NP E PK++ I+ WT+E++++ Sbjct: 119 TAIDKGIANNSILLMHRILKSALNLAVKQNIISRNPADFAEIPKKEKTPIQTWTEEEVKK 178 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--------------NNIFSIKTQ 227 F + S+ S+ + + + +G+R + Q + +N + Sbjct: 179 FLA-HSQESRYHIGYLLAITTGMRLGEVLGLRWQDIDFEKHTVTINQTSGHDNKIKKTAK 237 Query: 228 KTGTIITVELPDGFMKLLAMTPI--------------GKETFFINNDKQKMNATQFSIWF 273 + T+ +P+ + L I ++ N + + F F Sbjct: 238 TNSSKRTIPVPNETIAALKKHKILINKEKLRFGSAYLDQDLINCNEFGRIIKRAHFRKSF 297 Query: 274 KAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRL 331 K G+ + H +R AT+ G + G + Y+ + Sbjct: 298 IRMTHKVGIKEIKFHDLRHTHATLLLKQGVNPKIISERLGHTDISMTLSVYSHVL--PNM 355 Query: 332 GIKNSRRISSVV 343 + + + Sbjct: 356 QEEAVKNFGKSI 367 >gi|224372664|ref|YP_002607036.1| phage integrase [Nautilia profundicola AmH] gi|223589882|gb|ACM93618.1| phage integrase [Nautilia profundicola AmH] Length = 275 Score = 121 bits (304), Expect = 2e-25, Method: Composition-based stats. Identities = 43/248 (17%), Positives = 87/248 (35%), Gaps = 17/248 (6%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLF 144 ++ N+ +++ Q + I S + S + S + L+S+ F Sbjct: 16 KGVSKNTYEAYKRDLLQFEEYI-KKPIIEADNMDIISFLSSIGNK-RSLNRKLSSINSFF 73 Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM-QQFKSFWSE---GSQPRLAFEFLL 200 +A + +++ K + TKE++ K+ E + + F+ Sbjct: 74 DFAYKHGMSDT--KHKIKQAKIPKTLPKFLTKEEILNAIKNIKPEKWFDLRDKSLILFIY 131 Query: 201 YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL----PDGFMKLLAMTPIGKETFF 256 +GLR S++ + ++N + K V + D + L P E F Sbjct: 132 ATGLRISEALNTKISDIENGWVKVTMAKGEKQRIVPIAKVALDAIEEYLKKRPCQSEYLF 191 Query: 257 INNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTV 316 +N D + ++ K +N S H +R AT GA + G ++ Sbjct: 192 VNKDCKPLSRISAFNITKKY-----LNVSPHVLRHSFATALVLGGADLRVVQELLGHSSL 246 Query: 317 DQAETYTK 324 + + YT Sbjct: 247 NTTQIYTH 254 >gi|94969096|ref|YP_591144.1| phage integrase [Candidatus Koribacter versatilis Ellin345] gi|94551146|gb|ABF41070.1| phage integrase [Candidatus Koribacter versatilis Ellin345] Length = 359 Score = 121 bits (304), Expect = 2e-25, Method: Composition-based stats. Identities = 52/331 (15%), Positives = 112/331 (33%), Gaps = 14/331 (4%) Query: 3 PSLRLPP--FVTKERTRHGKII--YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKR 58 P + P V + + R G+ + + G R+ RL T ++A + Sbjct: 2 PRRKTPDRDGVYQRKDRPGQFWASWTDQNGKRRQRRLRGVFTLTQAKELLAAAQLRVERI 61 Query: 59 EYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH 118 + + + + + + + G I Sbjct: 62 KVLGFAEPTKERFEKIEARFLLHQRARLTKAGYERERGVVETHLHDYFGQMQLALIRRGD 121 Query: 119 IRSGVESRKH--TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176 I + V R +P++ + L +++ LF+ V E + +NP V+ PK +R Sbjct: 122 IANFVTKRAAEVSPATVAKELVTLKHLFRLCVEWELLVLNPATGVKAPKVAPGRVRWLQP 181 Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIIT 234 E+++ + +P +G+R S+ + N +++ K Sbjct: 182 EELRALLQACPDWLRP--IAGLAAATGMRRSEVLGVRWFDVDRRNGCLTLRQTKNNESRI 239 Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFS 293 V L + ++ GK + K+ Q S+ F + G+ + H +R Sbjct: 240 VFLNQSALHVIDSLRKGKSS---EKLFPKVTPEQVSMGFLRTCRELGIEDFRWHDLRHCF 296 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTK 324 A++ +GA ++ G K + + Y+ Sbjct: 297 ASLLRQSGADLQDVAELLGHKDLRMTKRYSH 327 >gi|86139973|ref|ZP_01058538.1| tyrosine recombinase XerD [Roseobacter sp. MED193] gi|85823391|gb|EAQ43601.1| tyrosine recombinase XerD [Roseobacter sp. MED193] Length = 328 Score = 121 bits (304), Expect = 2e-25, Method: Composition-based stats. Identities = 43/278 (15%), Positives = 94/278 (33%), Gaps = 33/278 (11%) Query: 88 AVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGV---ESRKHTPSSAIQFLTSMRV 142 A N+ +++ D + + + I + + + + ++ + L+++R Sbjct: 25 ARNTLLAYGRDLKDAASWLAHHDNRFSEAAREDIEAYLISCNAEGLSRATRARRLSALRQ 84 Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-------SEGSQPRLA 195 L+ +A + + + NP + ++ P R + ++ + ++ + Sbjct: 85 LYHFAFEEGWRSDNPAIQIKGPGRAKTLPKTLEVIEVDRLLDAARQTGRKPADRLRNTCL 144 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKE- 253 E L +G+R S+ V + + + K G V L + L + ++ Sbjct: 145 MELLYATGMRVSELMSLPVAAARGDPNMLLVQGKGGKERMVPLSPPAREALRAWLMQRDE 204 Query: 254 -------------TFFINNDKQ--KMNATQFSIWFKAKATKAGVN---KSAHGVRKFSAT 295 F + + + F + K A GV+ + H +R AT Sbjct: 205 ADEDSQAKGNPGSKFLFPSRGKEGHLTRHWFYLLIKDLAVTGGVDPKKVTPHTLRHAFAT 264 Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 GA + A G + E YT D RL Sbjct: 265 HLLANGADLRAIQALLGHADIATTEIYTHVLD-ARLSE 301 >gi|312174392|emb|CBX82639.1| Tyrosine recombinase xerD [Erwinia amylovora ATCC BAA-2158] Length = 346 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 54/309 (17%), Positives = 102/309 (33%), Gaps = 31/309 (10%) Query: 59 EYINSPRKKPTTLKWLISEY---RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT 115 P P +L L+ + R+ +W + ++ F + G + IT Sbjct: 19 RQPAGPAHDPKSLYALLLRFVKWRRERNWSETTLKTQTHHGYRFICWAAERGLYHAADIT 78 Query: 116 TKHIRSGVESR---------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166 + T + L ++V F W +Q + NP +E P+ Sbjct: 79 RPVLERYQRWLYQYRKTNGEALTSRTQRTTLQPLQVWFSWMAKQGLILANPAADLELPRL 138 Query: 167 KTEGIRP-WTKEDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGV--QHLQN 219 + R + E +++ + G + R E L +G+R + R Sbjct: 139 EKHLPRTILSVEQVEEVLNLCDLSTLQGMRDRALLELLWSTGIRRGEVARLETYSADFSR 198 Query: 220 NIFSIKTQKTGTIITVELPDGFMKLLA-----------MTPIGKETFFINNDKQKMNATQ 268 I +I K + + + + L ++P K F + + A Sbjct: 199 KILTIVQGKGKQDRVIPVGERALCWLRHYLHQVRPEVLVSPDCKALFLAMDGVAGLTANG 258 Query: 269 FSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 + AG+ K S H R AT + GA + A G ++V+ + YT+ + Sbjct: 259 ITHAVVPYLRAAGIEKGSCHLFRHAMATQMLENGADLRWIQAMLGHRSVESTQIYTQVSI 318 Query: 328 RIRLGIKNS 336 R + S Sbjct: 319 RALQAVHAS 327 >gi|15835241|ref|NP_297000.1| site-specific tyrosine recombinase XerC [Chlamydia muridarum Nigg] gi|270285413|ref|ZP_06194807.1| site-specific tyrosine recombinase XerC [Chlamydia muridarum Nigg] gi|270289427|ref|ZP_06195729.1| site-specific tyrosine recombinase XerC [Chlamydia muridarum Weiss] gi|301336810|ref|ZP_07225012.1| site-specific tyrosine recombinase XerC [Chlamydia muridarum MopnTet14] gi|34223083|sp|Q9PK47|XERC_CHLMU RecName: Full=Tyrosine recombinase xerC gi|8163270|gb|AAF73578.1| integrase/recombinase, phage integrase family [Chlamydia muridarum Nigg] Length = 315 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 38/222 (17%), Positives = 81/222 (36%), Gaps = 16/222 (7%) Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 H+ + + L++++ K+ V+ +++ NP + P+ E P T E + S Sbjct: 83 HSKRTVRRRLSAIKSFAKFCVKNQWIPENPAEMIRGPRLPKELPSPLTYEQVLALMSAPD 142 Query: 188 E----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFM 242 G + R E SGLR S+ + ++ K V + + Sbjct: 143 LDKVTGFRDRCLLELFYSSGLRISEITALNRSDIDFQSNLLRICGKGKKERIVPMTKVAV 202 Query: 243 KLL---------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRK 291 + L A + F+N ++++ F+ K G++ + H +R Sbjct: 203 QWLQAYLDHPDRAAVEQDHQACFLNRFGKRLSTRSIDRKFQQYLLKTGLSGTITPHTIRH 262 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 AT + G + G +++ YT + +++ I Sbjct: 263 TIATHWLERGMDLKTIQLLLGHTSLETTTIYTHVSMKLKKQI 304 >gi|163735189|ref|ZP_02142625.1| tyrosine recombinase XerD [Roseobacter litoralis Och 149] gi|161391647|gb|EDQ15980.1| tyrosine recombinase XerD [Roseobacter litoralis Och 149] Length = 323 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 42/284 (14%), Positives = 95/284 (33%), Gaps = 33/284 (11%) Query: 74 LISEYRKS-AHWGSLAVNSRISFESYFDQI--IRKSGDFDYRKITTKHIRSGV---ESRK 127 IS + ++ A A N+ +++ + D+ + + + ++ Sbjct: 7 WISAFLEAQAAELGAARNTLLAYGRDLKDFDSFLTHRNLDFHAAAQADVEAYLIACDAEG 66 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + ++ + L++++ L+++A + + + NP L + P R + + ++ ++ + Sbjct: 67 LSKATRARRLSAVKQLYRFAFEEGWRSDNPALQITGPGRDRKLPKTLSEAEVDRLLEAAR 126 Query: 188 ---EGSQPRLA----FEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPD 239 + R E L +G+R ++ V + + + K G V L Sbjct: 127 SSGRNTADRARNTCLMELLYATGMRVTELVSLPVSAARGDPRMLLIRGKGGKERMVPLSP 186 Query: 240 GFMKLLAMT----------------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV- 282 + P + + + +F + K A AGV Sbjct: 187 PARDATSEWLRLRDEKEALKKADGHPPSRFLYASRGVSGHLTRNRFYLLIKELAVDAGVS 246 Query: 283 --NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 + H +R AT GA + G V E YT Sbjct: 247 PSKVTPHTLRHAFATHLLANGADLRSIQTLLGHADVATTEIYTH 290 >gi|319649924|ref|ZP_08004074.1| phage integrase family domain-containing protein [Bacillus sp. 2_A_57_CT2] gi|317398362|gb|EFV79050.1| phage integrase family domain-containing protein [Bacillus sp. 2_A_57_CT2] Length = 304 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 41/282 (14%), Positives = 100/282 (35%), Gaps = 30/282 (10%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESY---FDQIIRKSGDFDYRKITTKHIRSGV---E 124 LK+ I ++ + ++ N+ S++ + + ++ + +++T HI+ + + Sbjct: 2 LKFAIQDFLDDREFKNVTPNTLESYKLIIGQLNDFLTENEVVNVQEVTPNHIKKFILHYQ 61 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 + + ++ L +R F + + E + NP +++ K + I +T ++Q + Sbjct: 62 KKGNNATTTNSKLQRIRAFFNYMIECEIITQNPAKKIKKAKEDIK-IDVFTDYHIKQMLN 120 Query: 185 FWSE---------GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIIT 234 ++ + L+ +G+R S+ + ++ K T Sbjct: 121 YYRRIKQREKAFYAYRDHSIIVILIGTGIRLSEMTALKWSDVDFQNHTLSVFGKNRKRET 180 Query: 235 VELPDGFMKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATK---AG 281 + + + +K L+ + E F F N + + FK + Sbjct: 181 MPITEKVVKELSAYKVYCEQFFGKENLHENIFTNRSSEPLTPDAVKNIFKRLSKIMNFKD 240 Query: 282 VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 V SAH R AG + + ++ E Y Sbjct: 241 VRLSAHTFRHTFCQRCIHAGMSTFAVQRLMRHSSIAVTEKYA 282 >gi|256847174|ref|ZP_05552620.1| tyrosine recombinase XerC [Lactobacillus coleohominis 101-4-CHN] gi|256715838|gb|EEU30813.1| tyrosine recombinase XerC [Lactobacillus coleohominis 101-4-CHN] Length = 312 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 38/280 (13%), Positives = 82/280 (29%), Gaps = 28/280 (10%) Query: 85 GSLAVNSRISFESYFDQIIRKS-------GDFDYRKITTKHIRSGVESRKHTPSSAIQFL 137 LA + +E+ + G ++ + + + + ++ + L Sbjct: 21 RQLAATTVQGYENDLRMFRKFLTAKKHWLGWLKIKRQDIQAYLTHLNDLRRQWTTINREL 80 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-----SEGSQP 192 S+R + + + V NP V R + + +M + Sbjct: 81 ASLRTFYNFLLTNGLVVANPFDEVRMKHHSRSLPRYFYEPEMNALFKAADGDGRPLDFRN 140 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVE------------LPD 239 R E L +G+R S+ ++ + + + K V L + Sbjct: 141 RAIIELLYATGMRVSECASLSLEQINWDVQMILVHGKGDKERYVPFGHYAKVALERYLHE 200 Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK--AGVNKSAHGVRKFSATIS 297 L+ FIN+ + + + K ++ H +R AT Sbjct: 201 CREPLMDKYHEEHRRVFINHYGKPITSEGIEYVLNQVVKKSSLNIHIHPHMLRHSFATAM 260 Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 + GA + G ++ + YT R L + Sbjct: 261 LNNGADIRSVQELLGHSSLSTTQIYTH-VTRENLQKTYMK 299 >gi|260433976|ref|ZP_05787947.1| tyrosine recombinase XerD [Silicibacter lacuscaerulensis ITI-1157] gi|260417804|gb|EEX11063.1| tyrosine recombinase XerD [Silicibacter lacuscaerulensis ITI-1157] Length = 316 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 44/295 (14%), Positives = 99/295 (33%), Gaps = 33/295 (11%) Query: 68 PTTLKWLISEYRKS-AHWGSLAVNSRISFESYFDQI-----IRKSGDFDYRKITTKHIRS 121 P T + IS + ++ A A N+ +++ +G + + Sbjct: 4 PETPELWISAFLEAQAAELGAATNTLLAYGRDLKDFAGWLSRHGAGFAQADQARIEAYLI 63 Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 +++ + ++ + L++++ L+++A + + NP + ++ P R+ + ++ + Sbjct: 64 DCDAQGLSRATRARRLSAIKQLYRFAFEEGWRDTNPAIQIKGPGRQKRLPKTLDVAEVDR 123 Query: 182 FKSFW-------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTII 233 ++ + E L +G+R ++ V + + + K G Sbjct: 124 LLQAARQTGRTQADRLRNTCLMELLYATGMRVTELVSLPVSAARGDPRMLLVLGKGGKER 183 Query: 234 TVELPDGFMKLLAMTPIGKET--------------FFINNDKQ--KMNATQFSIWFKAKA 277 V L LA ++ F + + + +F + K A Sbjct: 184 MVPLSPPARDALAAWLGARDAVEEASVAKGGQRSRFLFPSRGKSGHLTRHRFFLLVKELA 243 Query: 278 TKAGV---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 GV + H +R AT GA + G V E YT D Sbjct: 244 VCGGVSPEKVTPHTLRHAFATHLLANGADLRSIQTLLGHADVATTEIYTHVLDER 298 >gi|317046395|ref|YP_004114043.1| tyrosine recombinase XerC [Pantoea sp. At-9b] gi|316948012|gb|ADU67487.1| tyrosine recombinase XerC [Pantoea sp. At-9b] Length = 302 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 40/259 (15%), Positives = 83/259 (32%), Gaps = 19/259 (7%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYR-----KITTKHIRSGVESRKH-TPSSAIQFLT 138 L+ ++ ++ II + + + + R SS L+ Sbjct: 22 RQLSPLTQQNYARQLQAIITMADEMKITAWTQLEPAQVRNIAARSRRAGLGASSLALRLS 81 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQPRLA 195 ++R W V Q+ ++ NP + P+ + +++ Q + R Sbjct: 82 ALRSFLDWQVSQDMLSGNPAKGIATPRNARHLPKNMDVDEVNQLLEIDLNDPLAVRDRAM 141 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVEL-------PDGFMKLLAM 247 E + GLR S+ ++HL K V + ++ L A Sbjct: 142 LETMYGGGLRLSELVNMDLRHLDLEAGEVWVLGKGSKERRVPIGGTAVTWLQHWLPLRAS 201 Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAH 305 + F+++ +++A F K GV + H +R AT ++ Sbjct: 202 FAPQDDAVFVSSRGSRISARNVQKRFAEWGIKQGVASHIHPHKLRHSFATHLLESSGDLR 261 Query: 306 ELMATYGWKTVDQAETYTK 324 + G + + YT Sbjct: 262 AVQELLGHANLSTTQIYTH 280 >gi|319788822|ref|YP_004090137.1| integrase family protein [Ruminococcus albus 7] gi|315450689|gb|ADU24251.1| integrase family protein [Ruminococcus albus 7] Length = 359 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 57/347 (16%), Positives = 119/347 (34%), Gaps = 42/347 (12%) Query: 24 YFRKGHGRRIRLPYPHESTFIPAYMS---ALTGSTPKREYINSPRKKPT------TLKWL 74 Y RK R+ + Y S A ++ + P T+ L Sbjct: 7 YARKDGRYEGRVYLGKDENGKRRYKSYYGATAEEVRRKHELTQFSAVPNIPASKMTIATL 66 Query: 75 ISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR---KHTP 130 +E+ S + ++ ++ II G + + +K I + ++ + Sbjct: 67 AAEWLLSVQ-NRVKESTLENYRLKLKKHIIPSFGAMNCCAVGSKEIYGFMNAKIGNGLSS 125 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-G 189 L M+ +FK+A +EY N + PK++++ +R TK++ + KS+ +E Sbjct: 126 RYVSDILVLMKSMFKYAA-REYGFKNVFDGITMPKKQSKEVRLLTKDEENKLKSYITEKP 184 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-------------------- 229 + + +Y+GLR + C + + ++ +KT Sbjct: 185 TLAGMGIALTMYTGLRVGELCALTWADIDLDYRTLTVKKTMQRIQNHEGGGKTKLIISEP 244 Query: 230 ---GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-S 285 + + +P+ +++L F + + M F K G+ Sbjct: 245 KSEKSRRIIPIPECMIEMLRSFKADDGCFLLTGKDKPMEPRAMQYRFSRLLKKLGLPHIH 304 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKG-ADRIR 330 H +R A+ + + G L G +V+ Y +R R Sbjct: 305 YHALRHGWASRAIELGFDVKTLSEILGHSSVELTMRLYVHSNFERKR 351 >gi|118617318|ref|YP_905650.1| site-specific tyrosine recombinase XerD [Mycobacterium ulcerans Agy99] gi|118569428|gb|ABL04179.1| integrase/recombinase, XerD [Mycobacterium ulcerans Agy99] Length = 313 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 45/274 (16%), Positives = 86/274 (31%), Gaps = 35/274 (12%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH----IRSGVESRKHTPSS-------- 132 +A N+ S+ + + D + V R+ P S Sbjct: 21 RGVAANTLSSYRRDLRRYSKHLEDRGITDLAKVGEDDVSEFLVALRRGDPESGVLGLSAV 80 Query: 133 -AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----- 186 A + L ++R L ++A + A++ +V P + T +++ Sbjct: 81 SAARALIAVRGLHRFAAAEGLAALDVARAVRPPTPGRRLPKSLTIDEVLALLEGAGGDNP 140 Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFM 242 + R E L +G R S++ V + + K G V + + Sbjct: 141 ADGPLTLRNRALLELLYSTGSRISEAVGLDVDDIDTQARTVLLQGKGGKQRLVPVGRPAV 200 Query: 243 KLL-----------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGV 289 + L A G F+N +++ + A +A + S H + Sbjct: 201 QALDAYLVRGRPELARRGRGTPAIFLNARGGRLSRQSAWQVLQDAAERADITSGVSPHML 260 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYT 323 R AT + GA + G +V + YT Sbjct: 261 RHSFATHLLEGGADVRVVQELLGHASVTTTQIYT 294 >gi|56416387|ref|YP_153461.1| integrase/recombinase [Anaplasma marginale str. St. Maries] gi|56387619|gb|AAV86206.1| integrase/recombinase [Anaplasma marginale str. St. Maries] Length = 312 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 43/283 (15%), Positives = 103/283 (36%), Gaps = 34/283 (12%) Query: 87 LAVNSRISFESYFDQIIRKSGDFDYRKITT-----KHIRSGVESRKHTPSSAIQFLTSMR 141 ++ N+ S+ S + + G + R + + + SR ++P++ + ++++R Sbjct: 20 VSPNTSSSYRSDLEDLAEFLGRRNLRMVDASAADLRAYVRSLNSRGYSPATVARRISAIR 79 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK-----SFWSEGSQPRLAF 196 L+ + + +P +++ K + T +++ + EG + Sbjct: 80 GLYGFLYGDRIIDGDPAANLDSCKLGRPLPKVLTVDEVDKLLCAAGSDLSVEGRRTAAIV 139 Query: 197 EFLLYSGLRCSDSCRAGVQHLQ--------NNIFSIKTQKTGTIITVELPDGFMKLLAMT 248 L SG+R S+ G ++ + + K G + L + + + Sbjct: 140 NILYSSGVRISELINLGFYDIESMLKEQRSDVGHLVIKGKAGRERLILLNEVAIASIVAY 199 Query: 249 PIGKETFFINNDKQKM------------NATQFSIWFKAKATKAGVN---KSAHGVRKFS 293 ++ F + + + + KA A AGV+ S H +R Sbjct: 200 LAVRDHFIVGQKSESRWLFPGAKFDQCISRQRVGQLLKALAIVAGVDPKRISPHKLRHSF 259 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKN 335 AT + G+ + G ++ + YT A DR++ ++ Sbjct: 260 ATHLLNNGSNVVFIQKMLGHASLSTTQIYTYVANDRLKEALQT 302 >gi|229079787|ref|ZP_04212320.1| DNA integration/recombination/invertion protein [Bacillus cereus Rock4-2] gi|228703627|gb|EEL56080.1| DNA integration/recombination/invertion protein [Bacillus cereus Rock4-2] Length = 369 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 47/312 (15%), Positives = 109/312 (34%), Gaps = 38/312 (12%) Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVE 124 TLK ++ + + S+ ++ ++++ + +I G K+ HI+ + Sbjct: 60 PSKVTLKDYLNHWLEIKS-MSIEKSTFAGYKAFINQHVIPSIGMVALHKLNVIHIQKCYK 118 Query: 125 SRKHTPSSAIQFLTSMRVL---FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 + + L R+L AV+Q ++ NP E PK++ I+ WT+E++++ Sbjct: 119 TAIDKGIANNSILLMHRILKSALNLAVKQNIISRNPADFAEIPKKEKTPIQTWTEEEVKK 178 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--------------NNIFSIKTQ 227 F + S+ S+ + + + +G+R + Q + +N + Sbjct: 179 FLA-HSQESRYHIGYLLAITTGMRLGEVLGLRWQDIDFEKHTVTINQTSGHDNKIKQTAK 237 Query: 228 KTGTIITVELPDGFMKLLAMTPI--------------GKETFFINNDKQKMNATQFSIWF 273 + T+ +P+ + L I ++ N + + F F Sbjct: 238 TNSSKRTIPVPNETIAALKKHKILINKEKLRFGSAYLDQDLINCNEFGRIIKRAHFRKSF 297 Query: 274 KAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRL 331 K G+ + H +R AT+ G + G + Y+ + Sbjct: 298 IRMTHKVGIKEIKFHDLRHTHATLLLKQGVNPKIISERLGHTDISMTLSVYSHVL--PNM 355 Query: 332 GIKNSRRISSVV 343 + + + Sbjct: 356 QEEAVKNFGKSI 367 >gi|157803898|ref|YP_001492447.1| site-specific tyrosine recombinase XerD [Rickettsia canadensis str. McKiel] gi|157785161|gb|ABV73662.1| tyrosine recombinase [Rickettsia canadensis str. McKiel] Length = 308 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 52/286 (18%), Positives = 108/286 (37%), Gaps = 38/286 (13%) Query: 75 ISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDYRK--ITTKHIRSGVESRKHT-- 129 IS++ + +L+ NS S++ + ITT++IR+ +E Sbjct: 4 ISQFLEMLLAERALSKNSIFSYKRDLFDFQNYLAKQKLSELNITTENIRNWIEYLADNDL 63 Query: 130 -PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-- 186 S + +++++ +++ + + + A NP L+V+ PK +++ + + ++ + Sbjct: 64 QARSINRKISTIKSYYEFLISENHTAFNPVLNVDLPKYQSKLPEILSIDQIKSLLEYCSQ 123 Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK--------TGTIITV 235 EG + L SGLR S+ + + N S + +K + + Sbjct: 124 DATPEGIRLNAMIHLLYASGLRVSELVSLKLADILTNKMSGEVKKVFSVLGKGNKERVII 183 Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQK--------------MNATQFSIWFKAKATKAG 281 + ++ I F+N K K M F++ K+ A AG Sbjct: 184 INEQAVISIVKYLAIRD--VFLNKAKPKNLIYLFPSSAIAGYMTRQNFAMLLKSAALYAG 241 Query: 282 VN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 +N S H +R A+ + GA + G + + YT Sbjct: 242 LNPKHISPHILRHSFASHLLEGGADLRVIQELLGHADISTTQIYTH 287 >gi|109900374|ref|YP_663629.1| phage integrase [Pseudoalteromonas atlantica T6c] gi|109702655|gb|ABG42575.1| tyrosine recombinase XerC subunit [Pseudoalteromonas atlantica T6c] Length = 298 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 43/272 (15%), Positives = 104/272 (38%), Gaps = 17/272 (6%) Query: 70 TLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE---S 125 +L+ L+ +Y + +LA S +++ I + + ++T H+R + Sbjct: 6 SLQPLLGKYFDYLKYERNLAAKSIENYQRQLASICQALTITAWPELTVDHVRQVLNQARR 65 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ---F 182 + +P S L+++R + V E ++ NP +V+ PK+ + + ++M Q F Sbjct: 66 QGLSPRSIALRLSALRGYCAYLVELEVLSSNPAKAVQAPKQGSPLPKQLNVDEMHQLLDF 125 Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE------ 236 G + + E GLR ++ ++ LQ++ K + Sbjct: 126 DDDSLLGVRDKAMLELTYSCGLRLAELADLNLKSLQDDGQLRVIGKGSKERILPVGKTAL 185 Query: 237 --LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKF 292 L + + + F++ +++++ Q + + A + +++ H +R Sbjct: 186 KCLGEWLKVRGVLADGDEPALFLSKHRRRISHRQIAKRMQLWAKQQHLDQDINPHKLRHS 245 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTK 324 AT ++ + G + + YT Sbjct: 246 FATHILESSGDLRGVQELLGHANLSTTQVYTH 277 >gi|261250028|ref|ZP_05942605.1| tyrosine recombinase XerC [Vibrio orientalis CIP 102891] gi|260939532|gb|EEX95517.1| tyrosine recombinase XerC [Vibrio orientalis CIP 102891] Length = 310 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 42/268 (15%), Positives = 99/268 (36%), Gaps = 22/268 (8%) Query: 77 EYRKSAHWGSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSGV---ESRKHTP 130 EY +S L+++++ +++ + + + + G +++++ +R P Sbjct: 21 EYLRSE--KGLSLHTQRNYKQQLETMAGHLAQLGLKEWQQVDAGWVRQLASKGMREGMKP 78 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---WS 187 SS L+S+R F + + + ++ NP V P++K + +++ Q Sbjct: 79 SSLATRLSSLRSFFDFMMLRGEMSANPAKGVSAPRKKRPLPKNLDVDEIGQLLEVNEDDP 138 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELP----DGFM 242 + R E + +GLR ++ V+ + + I+ K V + Sbjct: 139 LAIRDRAMMELMYGAGLRLAELVSINVKDVGLSSGEIRVVGKGDKERKVPFTGMAAEWVS 198 Query: 243 KLLAMTPI----GKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATI 296 K L + P + F++ +++ K V + S H +R AT Sbjct: 199 KWLRVRPSLANSDELGLFVSKLGVRISHRNVQKRMAEWGQKQAVASHISPHKLRHSFATH 258 Query: 297 SADAGATAHELMATYGWKTVDQAETYTK 324 ++ + G + + + YT Sbjct: 259 MLESSNNLRAVQELLGHENISTTQIYTH 286 >gi|228961935|ref|ZP_04123475.1| DNA integration/recombination/invertion protein [Bacillus thuringiensis serovar pakistani str. T13001] gi|228797758|gb|EEM44831.1| DNA integration/recombination/invertion protein [Bacillus thuringiensis serovar pakistani str. T13001] Length = 369 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 47/312 (15%), Positives = 109/312 (34%), Gaps = 38/312 (12%) Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVE 124 TLK ++ + + S+ ++ ++++ + +I G K+ HI+ + Sbjct: 60 PSKVTLKDYLNHWLEIKS-MSIEKSTFAGYKAFINQHVIPSIGMVTLHKLNVIHIQKCYK 118 Query: 125 SRKHTPSSAIQFLTSMRVL---FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 + + L R+L AV+Q ++ NP E PK++ I+ WT+E++++ Sbjct: 119 TAIDKGIANNSILLMHRILKSALNLAVKQNIISRNPADFAEIPKKEKTPIQTWTEEEVKK 178 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--------------NNIFSIKTQ 227 F + S+ S+ + + + +G+R + Q + +N + Sbjct: 179 FLA-HSQESRYHIGYLLAITTGMRLGEVLGLRWQDIDFEKHTVTINQTSGHDNKIKKTAK 237 Query: 228 KTGTIITVELPDGFMKLLAMTPI--------------GKETFFINNDKQKMNATQFSIWF 273 + T+ +P+ + L I ++ N + + F F Sbjct: 238 TNSSKRTIPVPNETIAALKKHKILINKEKLKFGSAYLDQDLINCNEFGRIIKRAHFRKSF 297 Query: 274 KAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRL 331 K G+ + H +R AT+ G + G + Y+ + Sbjct: 298 IRMTHKVGIKEIKFHDLRHTHATLLLKQGVNPKIISERLGHTDISMTLSVYSHVL--PNM 355 Query: 332 GIKNSRRISSVV 343 + + + Sbjct: 356 QEEAVKNFGKSI 367 >gi|323143371|ref|ZP_08078059.1| phage integrase, N-terminal SAM-like domain [Succinatimonas hippei YIT 12066] gi|322416889|gb|EFY07535.1| phage integrase, N-terminal SAM-like domain [Succinatimonas hippei YIT 12066] Length = 297 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 51/239 (21%), Positives = 87/239 (36%), Gaps = 22/239 (9%) Query: 109 FDYRKITTKHIRSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166 + K ++K I + S K S +FL SMR + + Y +P ++ PK Sbjct: 45 VEPAKFSSKDIEGFLASAKDRLSARSTARFLCSMRAFSAFLKLENYRDDDPLSLIDNPKL 104 Query: 167 KTEGIRPWTKEDMQQFKSF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQ--HLQNN 220 + ++ + +F + G + R FE + GLR S+ +L + Sbjct: 105 PQSLPKIMSEATVDEFINAITTDTDVGLRDRAMFETVYSCGLRVSELVNLTFDSLNLVDG 164 Query: 221 IFSIKTQKTGTIITVELPD----GFMKLLAMTPIGKE------TFFINNDK-QKMNATQF 269 I+ K V L D + LA I K+ F++ ++ F Sbjct: 165 YLIIR-GKGDKERLVPLGDNAVWWIKRYLAEGRISKDPKNQCPYVFLSGKGVGPLSREGF 223 Query: 270 SIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 K A+K G++K S H R AT + A + G ++ + YT A Sbjct: 224 WYRVKYYASKIGLSKAPSPHTFRHAFATHLLNHDADLRSVQLLLGHSSLTTTQIYTHVA 282 >gi|239631511|ref|ZP_04674542.1| tyrosine recombinase XerC subunit [Lactobacillus paracasei subsp. paracasei 8700:2] gi|239525976|gb|EEQ64977.1| tyrosine recombinase XerC subunit [Lactobacillus paracasei subsp. paracasei 8700:2] Length = 298 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 43/268 (16%), Positives = 93/268 (34%), Gaps = 30/268 (11%) Query: 85 GSLAVNSRISFESYFDQ----IIRKSGDFDYRKITTKHIRSGV---ESRKHTPSSAIQFL 137 + + ++ S + + G D+R + +++ + + +S + + Sbjct: 15 RQYSPETVTAYLSDLQEFQAFLKANGGFTDFRHVDDLDVQTYLTDLNKQDLARTSIARKI 74 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS----FWSEGSQPR 193 +S+R +++ R + V NP VE K+ + + + ++Q+ + R Sbjct: 75 SSLRSFYRYLTRIDVVKSNPFELVELKKQHHHLPQFFYEAEIQELFKTVAGKTPLDQRNR 134 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVE------------LPDG 240 E L +G+R S+ + + + N + K V L DG Sbjct: 135 ALLEVLYGTGIRVSECAKLTLNQVDFNTALLLIHGKGNKDRYVPFGQYAQQALRTYLKDG 194 Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQ----FSIWFKAKATKAGVNKSAHGVRKFSATI 296 L+A + F+N + + + K A ++ H +R AT Sbjct: 195 RQVLMAKSQAQHRYVFVNQYGRPITSRGIEYILDQLIKQTTLTANIH--PHMLRHSFATH 252 Query: 297 SADAGATAHELMATYGWKTVDQAETYTK 324 D GA + G ++ + YT Sbjct: 253 MLDHGADLRTVQELLGHASLSTTQIYTH 280 >gi|71275345|ref|ZP_00651631.1| Phage integrase [Xylella fastidiosa Dixon] gi|71901026|ref|ZP_00683137.1| Phage integrase [Xylella fastidiosa Ann-1] gi|71163645|gb|EAO13361.1| Phage integrase [Xylella fastidiosa Dixon] gi|71729212|gb|EAO31332.1| Phage integrase [Xylella fastidiosa Ann-1] Length = 339 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 62/333 (18%), Positives = 113/333 (33%), Gaps = 28/333 (8%) Query: 7 LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66 +P F + + + G + YY+ G R P Y A+ + E+ Sbjct: 11 IPRFRVRPQ-KSGVVYYYYDHGGKPRKETPLG------RDYGLAI-KRWAELEHAQITPA 62 Query: 67 KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVE 124 T + + YR + A N++ +++ D + I +IR ++ Sbjct: 63 IAVTFRHVAERYRAEVI-PTKAYNTQRVEHRCLAPLLKFFDDPPAPFEAIKPVNIRQYLD 121 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVA-INPCLSVERPKRKTEGIRPWTKEDMQQFK 183 R A + ++ L+ WA + NPC + R K + D ++ Sbjct: 122 WRTSKV-IANREVSVFSHLWNWARSKGITDLPNPCGGIRRNKATGRDVYV----DDTTYR 176 Query: 184 SFWSEGSQP-RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242 + + Q R A + +G R SD +H+ N I KTG + + + Sbjct: 177 AVYQAADQTLRDAMDLAYLTGQRVSDVVSMDERHIVNGALEICQAKTGAKLAITVTGELA 236 Query: 243 KLLAMTPIGKE-------TFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKF 292 L+ K ++ +++ T F T AG+ K +R Sbjct: 237 VLIKRIFDRKRGMKLRSTRLIVDAKGLELSRTGLRYRFDRARTAAGIAKEVFQFRDLRAK 296 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKG 325 +AT AD + A G +V E Y + Sbjct: 297 AATDKADLAGDIRQAQAQLGHASVTMTEHYVRK 329 >gi|319778943|ref|YP_004129856.1| Tyrosine recombinase XerC [Taylorella equigenitalis MCE9] gi|317108967|gb|ADU91713.1| Tyrosine recombinase XerC [Taylorella equigenitalis MCE9] Length = 315 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 46/290 (15%), Positives = 100/290 (34%), Gaps = 40/290 (13%) Query: 74 LISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV---ESRKHT 129 + ++ +S + + ++ +++ +I + D K+ +R + SR Sbjct: 4 YVEQWLQSLVTEKNSSPHTVAAYKRDLQHLIDIFPEKDLSKLNNMDVRQAIATLHSRDFN 63 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---- 185 P S + L+S R +KW + + INP L ++ PK + T ++ + Sbjct: 64 PRSLTRILSSWRNFYKWYSLKYELDINPTLGIKAPKVARPLPKALTADEAKLLLDVGLQT 123 Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRA-------------GVQHLQNNIFSIKTQKT 229 + ++ + FE L SGLR S+ G + N+ ++ K Sbjct: 124 DDNSAVHARDQAMFELLYSSGLRLSELVNLDIEYHKSQDHVSKGWLDINNHELTVI-GKG 182 Query: 230 GTIITVELPDGFMKLL-------------AMTPIGKETFFINNDKQKMNATQFSIWFKAK 276 V L + + + + K F+ ++++ + K Sbjct: 183 NKPRIVPLGEKAEEAILHWLNRRIELEGPKTSASDKCALFLGAQGKRISTRVVQLQLKKL 242 Query: 277 ATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 A K + N H +R A+ + + G + + YT+ Sbjct: 243 ALKTNIPSNIHPHVLRHSFASHILQSSQDLRAVQDLLGHSKISTTQLYTR 292 >gi|149202773|ref|ZP_01879745.1| tyrosine recombinase XerD [Roseovarius sp. TM1035] gi|149144055|gb|EDM32089.1| tyrosine recombinase XerD [Roseovarius sp. TM1035] Length = 323 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 41/300 (13%), Positives = 90/300 (30%), Gaps = 41/300 (13%) Query: 88 AVNSRISFESYFDQIIRKSGDF-----DYRKITTKHIRSGVESRKHTPSSAIQFLTSMRV 142 A N+ +++ + + +++ ++ + L+++R Sbjct: 22 AKNTLLAYARDLKDFSEWVENQGLALQTLTQPDIDRYLVFCDAQGLARATRARRLSAIRQ 81 Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG-------SQPRLA 195 L+++A + A NP + ++ P + + ++E++ + S+ Sbjct: 82 LYRFAFDERLRADNPAIRIKGPGKAQRLPKTLSEEEVSRLLDMAPAHGRTASERSRNACL 141 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFMKLL--------- 245 L +G+R S+ + + + + K G V L L Sbjct: 142 VALLYATGMRVSELVSLPLGAARGDPRMILVRGKGGKERMVPLSPPARAALSDWLAIRDA 201 Query: 246 -----AMTPIGKETFFINNDK--QKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSAT 295 + + + + +F K + KA V+ + H +R AT Sbjct: 202 EESARRAKGVQSSPYLFASGGASGHLTRHRFYNLIKEISVKAHVDPDKVTPHTLRHAFAT 261 Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADRIR---------LGIKNSRRISSVVDSD 346 GA + G V E YT + L R+ SD Sbjct: 262 HLLANGADLRVIQTLLGHADVATTEIYTHVLEARLQALVQEHHPLAQAARRKTGGKTSSD 321 >gi|300934030|ref|ZP_07149286.1| integrase/recombinase [Corynebacterium resistens DSM 45100] Length = 276 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 52/263 (19%), Positives = 89/263 (33%), Gaps = 27/263 (10%) Query: 95 FESYFDQIIRKSGDFDYRKITTKHIRSGV--------ESRKHTPSSAIQFLTSMRVLFKW 146 ++ D+ G+ + +T+ I + + SSA + L S+R L + Sbjct: 4 YQRDIDRYQEWLGEREIADVTSNDIEQHLVWLQNDEPGHKGIARSSAARALASIRSLHDF 63 Query: 147 AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS-------QPRLAFEFL 199 R++ + N ++V PKR + + T E + + + R E L Sbjct: 64 GEREKLLPSNVAVTVPVPKRGSSIPKALTVEQVSSLLDATPNDAAASLVDIRDRAVLEML 123 Query: 200 LYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLL-----AMTPI--- 250 +G R S+ V + + K V L + L P Sbjct: 124 YSTGARISELLALDVDDVDQGERMVLVRGKGAKERLVPLGSPASEALEQYVVRARPAMNK 183 Query: 251 -GKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELM 308 G F+N +M A +AG+ + H +R AT GA + Sbjct: 184 KGSPALFLNMRGGRMGRQSGFKTVMQAAERAGLPPVNPHALRHSFATHLLQGGADVRVVQ 243 Query: 309 ATYGWKTVDQAETYTK-GADRIR 330 G +V + YTK AD +R Sbjct: 244 ELLGHSSVATTQIYTKVTADHLR 266 >gi|261880904|ref|ZP_06007331.1| tyrosine recombinase XerD [Prevotella bergensis DSM 17361] gi|270332412|gb|EFA43198.1| tyrosine recombinase XerD [Prevotella bergensis DSM 17361] Length = 292 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 46/278 (16%), Positives = 97/278 (34%), Gaps = 30/278 (10%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQI----IRKSGDFDYRKITTKHIRSGVE---S 125 +I ++ + + + S+ +G + + + IR +E Sbjct: 1 MIEKFLNYLQFELCRSPLTVESYRRDLQAFEVFFRNLNGQLSWESVDSDVIRDWMEGMMD 60 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 R + +S + L+++R L+++A+ + VA +P ++ PK++ + + +M + Sbjct: 61 RGNNAASVNRRLSALRSLYRFALSHQLVARDPARCIDGPKKQKPLPQFLKENEMDRLLDD 120 Query: 186 WSEGS-----QPRLAFEFLLYSGLRCSDSCRA--GVQHLQNNIFSIKTQKTGTIITVELP 238 GS + + +G+R S+ N+ + T K + Sbjct: 121 MEWGSGYKDVRAKTIITTFYETGIRLSELVGLDDESADFHNHQLKV-TGKGNKQRIIPFG 179 Query: 239 DGFMKLL--------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV----NKSA 286 D K L F+ + +M + + KA A V + Sbjct: 180 DELEKTLRWFVETRNREVERTGNALFVTEEGVRMT--SQQVRQEVKARLAQVCTLKKLTP 237 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R AT + GA + G ++V E YT Sbjct: 238 HVLRHTFATTMLNHGAGLESVKRLLGHESVSTTEIYTH 275 >gi|84516057|ref|ZP_01003417.1| tyrosine recombinase XerD [Loktanella vestfoldensis SKA53] gi|84509753|gb|EAQ06210.1| tyrosine recombinase XerD [Loktanella vestfoldensis SKA53] Length = 306 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 44/273 (16%), Positives = 91/273 (33%), Gaps = 29/273 (10%) Query: 86 SLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGV---ESRKHTPSSAIQFLTSM 140 A N+++++ + ++T I S + + S+ + L+++ Sbjct: 17 DAATNTQLAYARDLQGFAEWLASRGLHFMQVTQDQIESYLIDCAADGLAKSTRARRLSAI 76 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF----KSFWSEGSQPRLAF 196 + LF++A + + A NP L ++ P R + ++ + ++ +G + Sbjct: 77 KQLFRFAYDEGWRADNPALQIKGPGRAQRLPKTLDLAEVDRLLDAARASPRDGLRNGCLM 136 Query: 197 EFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGF-------------- 241 E L +G+R S+ V + + + K G V L Sbjct: 137 ELLYATGMRVSELVSLPVSAARGDPRMLLVRGKGGKERLVPLSPPARAAMAAWLAARDAA 196 Query: 242 MKLLAMTPIGKETFFINNDKQ--KMNATQFSIWFKAKATKAGV---NKSAHGVRKFSATI 296 ++ F + + + F K A AG+ + H +R AT Sbjct: 197 QEVAQKAGKPASKFLFPSHGKAGHLTRHAFFGLIKGFAVTAGLSPERVTPHVLRHAFATH 256 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRI 329 GA + G + E YT D+ Sbjct: 257 LLAGGADLRSIQTMLGHADIATTEIYTHVLDQR 289 >gi|157964440|ref|YP_001499264.1| site-specific tyrosine recombinase XerD [Rickettsia massiliae MTU5] gi|157844216|gb|ABV84717.1| Tyrosine recombinase XerD [Rickettsia massiliae MTU5] Length = 306 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 50/287 (17%), Positives = 104/287 (36%), Gaps = 39/287 (13%) Query: 75 ISEYRKSA-HWGSLAVNSRISFESYF----DQII-RKSGDFDYRKITTKHIRSGVESRKH 128 IS++ + +L+ NS +S++ + + +K + + + + S Sbjct: 4 ISQFLEMLLAERALSKNSILSYKRDLFDFHNYLATQKLSELNITTENIRDWIEYLASNDL 63 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-- 186 S + +++++ +K+ + + + A NP L+V+ PK + + + + ++ Sbjct: 64 QARSINRKISTIKSYYKFLISENHTAFNPVLNVDLPKYQNKLPEILSIDQIKSLLEHCSQ 123 Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN---------IFSIKTQKTGTIIT 234 EG + L SG R S+ + + N IFS+ + + Sbjct: 124 DNSPEGIRLNAMIHLLYASGFRVSELVSLKLADILTNKTSKGEVRKIFSVLGKGNKERVI 183 Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQK--------------MNATQFSIWFKAKATKA 280 V + + I F+N K + M F+I K+ A A Sbjct: 184 VINEQAVISIAKYLAIRD--VFVNKAKPRNLIYLFPSSALAGYMTRQNFAILLKSAALYA 241 Query: 281 GVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 G+N S H +R A+ + GA + G + + YT Sbjct: 242 GLNPEHISPHILRHSFASHLLEGGADLRVIQELLGHADISTTQIYTH 288 >gi|157828362|ref|YP_001494604.1| site-specific tyrosine recombinase XerD [Rickettsia rickettsii str. 'Sheila Smith'] gi|165933070|ref|YP_001649859.1| site-specific tyrosine recombinase XerD [Rickettsia rickettsii str. Iowa] gi|157800843|gb|ABV76096.1| tyrosine recombinase [Rickettsia rickettsii str. 'Sheila Smith'] gi|165908157|gb|ABY72453.1| integrase/recombinase (XerD/RipX family) [Rickettsia rickettsii str. Iowa] Length = 306 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 48/276 (17%), Positives = 99/276 (35%), Gaps = 38/276 (13%) Query: 85 GSLAVNSRISFESYF----DQIIR-KSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139 +L+ NS +S++ + + + K + + + + S S + +++ Sbjct: 15 RALSKNSILSYKRDLFDFQNYLAKHKLSELNITTENIRDWIEYLASNDLQARSINRKIST 74 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-----SEGSQPRL 194 ++ +++ + + + A NP L+V+ PK + + + ++ EG + Sbjct: 75 IKSYYEFLISENHTAFNPVLNVDLPKYQNKLPEILSIAQIKSLLEHCSQDNSPEGIRLNA 134 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNN---------IFSIKTQKTGTIITVELPDGFMKLL 245 L SGLR S+ + + N IFS+ + + V + + Sbjct: 135 MIHLLYASGLRVSELVSLKLADILTNKTSKGEVRKIFSVLGKGNKERVIVINEQAVISIA 194 Query: 246 AMTPIGKETFFINNDKQK--------------MNATQFSIWFKAKATKAGVN---KSAHG 288 I F+N K + M F+I K+ A AG+N S H Sbjct: 195 KYLAIRD--VFVNKAKPRNLIYLFPSSALAGYMTRQNFAILLKSAALYAGLNPEYISPHI 252 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 +R A+ + GA + G + + YT Sbjct: 253 LRHSFASHLLEGGADLRVIQELLGHADISTTQIYTH 288 >gi|331697596|ref|YP_004333835.1| Tyrosine recombinase xerC [Pseudonocardia dioxanivorans CB1190] gi|326952285|gb|AEA25982.1| Tyrosine recombinase xerC [Pseudonocardia dioxanivorans CB1190] Length = 307 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 47/264 (17%), Positives = 85/264 (32%), Gaps = 28/264 (10%) Query: 88 AVNSRISF----ESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS---- 139 + N+ ++ Y + + G D + + V + + P+ + Sbjct: 26 SPNTLRAYGNDLRRYVAHLRER-GVDDLAAVQEADVSGFVAALRSGPAPLAASSAARALA 84 Query: 140 -MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRL 194 +R L ++A R V + +V P R T ++++Q + G + R Sbjct: 85 AVRGLHRFAARDGLVDDDVSRAVTPPATARRLPRTLTVDEVEQLLAGCIGDGPTGLRDRA 144 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFMKL--------- 244 E L +G R S++ V L + K G V + + Sbjct: 145 LLELLYSTGARISEAVGIDVDDLDAESRTVLLHGKGGKQRVVPVGRPALAAVDAWLVRGR 204 Query: 245 --LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300 LA G +N +++ + A AGV S H +R AT Sbjct: 205 PALASRGRGSPALLLNARGARLSRQSAWHVLRGAAEVAGVRAEVSPHTLRHCFATHLLSG 264 Query: 301 GATAHELMATYGWKTVDQAETYTK 324 GA + G +V + YT Sbjct: 265 GADVRVVQELLGHASVATTQIYTH 288 >gi|315122637|ref|YP_004063126.1| integrase family protein [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313496039|gb|ADR52638.1| integrase family protein [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 102 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 41/102 (40%), Positives = 60/102 (58%) Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFL 199 M V+FKWAV + V NP V R KT+G WT E ++QF+ + G + LA E + Sbjct: 1 MAVVFKWAVSRGLVKSNPTSGVSRQPWKTKGFHTWTIEQIEQFRKYHPIGKKASLALEMM 60 Query: 200 LYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241 L+ GLR SD R G+QH+++ + SI+TQKTG + + + Sbjct: 61 LFLGLRRSDVMRVGIQHIKDEVMSIETQKTGVYVHIPIAPLL 102 >gi|229544386|ref|ZP_04433444.1| tyrosine recombinase XerC [Bacillus coagulans 36D1] gi|229324871|gb|EEN90548.1| tyrosine recombinase XerC [Bacillus coagulans 36D1] Length = 300 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 38/264 (14%), Positives = 87/264 (32%), Gaps = 24/264 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITT------KHIRSGVESRKHTPSSAIQFLT 138 + + + + + + + + + ++ ++ + ++ Sbjct: 20 KNYSAYTIKFYRLDLEDFFAFLTAQGIASLDEVGYPAGRLYLTMLHEHGYSRATVARKIS 79 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRL 194 S+R FK+ +R+ V NP + +PK+ + + +E+M+Q + + + R Sbjct: 80 SIRSFFKFLMRERIVKENPFALLSQPKQHKRLPKFFYEEEMEQLFAACEGDDALSRRNRA 139 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL------------PDGFM 242 E L +G+R S+ +Q + +I + G + L Sbjct: 140 LLEILYATGIRVSECVNIRLQDIDFEFETIHVKGKGKKERIVLFGHFAGEAVSDYMAHAR 199 Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADA 300 K L F+N + KA + H +R AT + Sbjct: 200 KTLMRGKEDHPYLFVNARGGALTDKGVRYILNEMIKKAALTGKIHPHMLRHTFATHLLNH 259 Query: 301 GATAHELMATYGWKTVDQAETYTK 324 GA + G +++ + YT Sbjct: 260 GADLRTVQDLLGHESLSSTQVYTH 283 >gi|119964153|ref|YP_947420.1| tyrosine recombinase XerD [Arthrobacter aurescens TC1] gi|119951012|gb|ABM09923.1| tyrosine recombinase XerD [Arthrobacter aurescens TC1] Length = 319 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 52/288 (18%), Positives = 95/288 (32%), Gaps = 35/288 (12%) Query: 71 LKWLISEYRKSAH-WGSLAVNSRISFESYFDQ---IIRKSGDFDYRKITTKHIRSGVESR 126 + I++Y + LA N+ ++ + + G IT H+ + V++ Sbjct: 12 VDRAITDYLQHVGVERGLAANTLSAYRRDLARYSNFLAAQGVEQPGSITRHHVTAFVQAL 71 Query: 127 KHT--------PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 SA + + ++R L K+ + +P V P + + + Sbjct: 72 SDGSDGAAALGVRSAARTVVAVRGLHKFWALEGTTTADPASDVHPPMPGKRLPKAISVGE 131 Query: 179 MQQFKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL------QNNIFSIKTQK 228 + + + G + R EFL +G R S++ V + + K Sbjct: 132 VTRILEAAGSDTATGLRDRALLEFLYSTGARISEAVGLDVDDVSLEDTGGDPAIVRLFGK 191 Query: 229 TGTIITVELPDGFMK-----------LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKA 277 V L + LLA G F+N +++ K A Sbjct: 192 GSKERLVPLGSFGARAVGAYVVRGRPLLASKGKGTPALFLNARGGRISRQSAWTILKTAA 251 Query: 278 TKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 KA + K S H +R AT + GA + G +V + YT Sbjct: 252 EKANITKDVSPHTLRHSFATHLLEGGADVRVVQELLGHASVTTTQVYT 299 >gi|323140540|ref|ZP_08075467.1| tyrosine recombinase XerC [Phascolarctobacterium sp. YIT 12067] gi|322414992|gb|EFY05784.1| tyrosine recombinase XerC [Phascolarctobacterium sp. YIT 12067] Length = 302 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 33/232 (14%), Positives = 84/232 (36%), Gaps = 18/232 (7%) Query: 114 ITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173 + + + + +++ + + ++++R FK+ VR+ + +P V PK + + Sbjct: 57 LDVRGYLAELNEKQYARRTIARRISALRSFFKYLVREAVIEYSPLTKVRTPKLEKKLPAF 116 Query: 174 WTKEDMQQFKSFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQK 228 + ++ + + G + + E L +G R S+ ++ + +N F + K Sbjct: 117 LDEIEINELLAMPDKSKVLGVRDQAVLEMLYATGCRVSELVGLTLERVDLSNRFVLLLGK 176 Query: 229 TGTIITVELP-----------DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKA 277 + + +L+ + F+NN ++ + Sbjct: 177 GNKERVMPVGHTCCAALSTYYRVRQQLMLQYQQKHDFIFVNNRGGRLTDRSVRRILEKYI 236 Query: 278 TKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 ++K S H +R AT + GA + G + + YT ++ Sbjct: 237 NMLAIHKNVSPHTIRHSFATHLLEHGADLRSVQELLGHANLSTTQIYTHVSN 288 >gi|297748477|gb|ADI51023.1| hypothetical protein CTDEC_0347 [Chlamydia trachomatis D-EC] gi|297749357|gb|ADI52035.1| hypothetical protein CTDLC_0347 [Chlamydia trachomatis D-LC] Length = 317 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 37/223 (16%), Positives = 80/223 (35%), Gaps = 18/223 (8%) Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 H+ + + L++++ ++ V+ + + NP + P+ E P T E + + Sbjct: 85 HSKRTVRRRLSAIKSFARFCVKNQLIPENPAEMIRGPRLPQELPSPLTYEQVLALMAAPE 144 Query: 188 E----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPD-- 239 G + R E SGLR S+ + +++ I+ K V + Sbjct: 145 LDKVTGFRDRCLLELFYSSGLRISEITALNRADIDFQSHLLHIR-GKGKKERIVPMTKVA 203 Query: 240 --GFMKLLAMTPI-----GKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVR 290 L + F+N ++++ F+ K G++ S H +R Sbjct: 204 VQWLQDYLNHPDRASVEQDHQACFLNRFGKRLSTRSIDRKFQQYLLKTGLSGSITPHTIR 263 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 AT + G + G +++ YT + +++ I Sbjct: 264 HTIATHWLERGMDLKTIQLLLGHTSLETTTIYTHVSMKLKKQI 306 >gi|226313077|ref|YP_002772971.1| tyrosine recombinase [Brevibacillus brevis NBRC 100599] gi|226096025|dbj|BAH44467.1| probable tyrosine recombinase [Brevibacillus brevis NBRC 100599] Length = 314 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 41/271 (15%), Positives = 88/271 (32%), Gaps = 25/271 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITT------KHIRSGVESRKHTPSSAIQFLT 138 + + ++ + + + + + + + R + S + L+ Sbjct: 22 KNASPHTVKQYVADISEFVSFMEQHQITVFAAVSYLHGRSFLAQLAGRGLSRRSIARKLS 81 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRL 194 S+R L+++ +R+ + NP V PK + + +++Q F G + RL Sbjct: 82 SLRSLYRFLLREGQLEQNPFQLVSTPKMEKKLPSFLYPQEVQAFFDLPDTTTPLGIRDRL 141 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIF-SIKTQKTGTIITVELPDGFMKLLA------- 246 FE L SG+R ++ V + ++ ++ K V + +L Sbjct: 142 IFELLYASGMRVTELTTLSVSDVNPSMGVALVYGKGAKERYVPVGSYACDVLRQYLEHGR 201 Query: 247 ----MTPIGKETFFINNDKQKMNATQFSIWFKAKAT--KAGVNKSAHGVRKFSATISADA 300 + +N + ++ + S H R AT + Sbjct: 202 EKLLAGKVEHGNLLVNYRGEPLSDRSVRRIVDKYVDTYALQLRVSPHTFRHTFATHMLNG 261 Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRL 331 GA + G V + YT + RL Sbjct: 262 GADLRTVQELLGHVNVSTTQVYTH-VTKERL 291 >gi|145295931|ref|YP_001138752.1| site-specific tyrosine recombinase XerC [Corynebacterium glutamicum R] gi|140845851|dbj|BAF54850.1| hypothetical protein [Corynebacterium glutamicum R] Length = 315 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 47/299 (15%), Positives = 102/299 (34%), Gaps = 17/299 (5%) Query: 49 SALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSG 107 +A +G S P+ L LI ++ + + + + S + Sbjct: 8 AARSGRNA-PPSGISGADAPSKLHTLIDDFCEHLDLVVGRSAATIRGYRSDLYAMADTIE 66 Query: 108 DFD-YRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166 D D + T + + ++ + S++ WA + ++ + + PK Sbjct: 67 DIDNFSLPTLRQWLGIAVDEGKSRATLARRTASVKAFSSWAQKNGHLKADEAARLISPKI 126 Query: 167 KTEGIRPWTKEDMQQFKSFWS-----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI 221 + + ++ F + E + E L +G+R ++ C + + + Sbjct: 127 TRDLPKILGEQQAGDFVENAASTNEEEFLRDSAILELLYATGMRVAELCGIDLPDIDYDR 186 Query: 222 FSIKT-QKTGTIITVELPDGFMKLLAMTPIGKE-------TFFINNDKQKMNATQFSIWF 273 ++ K V + K L ++ F+ Q++NA Q Sbjct: 187 KMVRVLGKGNKERVVPFGESAHKALRNWLDVRDEMAEDPKALFVGVRGQRINARQVRRIV 246 Query: 274 KAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 A GV+ S H +R +AT D GA ++ G ++ + YT +++ L Sbjct: 247 DRVAKVTGVDHLSPHSLRHTAATHLLDGGADLRQVQELLGHSSMQTTQIYTHVSNKRLL 305 >gi|332158066|ref|YP_004423345.1| integrase/recombinase [Pyrococcus sp. NA2] gi|331033529|gb|AEC51341.1| integrase/recombinase [Pyrococcus sp. NA2] Length = 279 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 43/281 (15%), Positives = 103/281 (36%), Gaps = 20/281 (7%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134 I E+ + N+ + Y + + + + + ++ + ++ S Sbjct: 6 IEEFATYLELEGKSKNTIRMYTYYLSKFLEEG--YSPTARDALRFLARLKKKGYSIRSIN 63 Query: 135 QFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193 + +++ FK+ + E ++ PK R T+E++++ + R Sbjct: 64 LIVHALKAYFKFEGLETE------AEKLKTPKIPKTLPRSLTEEEIKKVIEAAK-NLRDR 116 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDGF----MKLLAM 247 L L +GLR S+ C ++ + + ++ K G + L + + L Sbjct: 117 LILLLLYGAGLRVSELCNLKIEDVNFEKGFLIVRGGKGGKDRIIPLSETLLQEIQRYLKT 176 Query: 248 TPIGKETFFI---NNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATA 304 F+ K K++ K +AG+N + H +R AT + G Sbjct: 177 RKDNSPYLFVEIRRGKKDKLSPKTVWWIVKKYGEEAGINLTPHQLRHSFATHMLERGIDI 236 Query: 305 HELMATYGWKTVDQAETYTKGADR-IRLGIKNSRRISSVVD 344 + G ++ + YTK + ++ ++ +R I +++ Sbjct: 237 RIIQELLGHASLSTTQIYTKVTTKHLKEAVEKARLIETIIG 277 >gi|146277571|ref|YP_001167730.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17025] gi|145555812|gb|ABP70425.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17025] Length = 311 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 54/294 (18%), Positives = 104/294 (35%), Gaps = 33/294 (11%) Query: 67 KPTTLKWLISEYRKS-AHWGSLAVNSRISFESYFD----QIIRKSGDFDYRKITTKHIRS 121 P ++ IS + ++ A A N+R+++ + R+S +F Sbjct: 2 APAGMERWISAFLEAQAAELDAARNTRLAYGRDLKDFAGWLARRSEEFATADRAAVEAYL 61 Query: 122 GV-ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 +++ +P++ + L+S+R L+++A + + A NP + + P R + E++ Sbjct: 62 VFCDAQGLSPATRARRLSSIRQLYRFAHEEGWRADNPAIRLRGPGRARRLPKTLEIEEVD 121 Query: 181 QFKS-------FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTI 232 + ++ + R E L +G+R S+ V + N + K G Sbjct: 122 RLLDAARDKGRRAADQVRNRCLLELLYATGMRVSEMVGLPVAAARGNPQMILVRGKGGKE 181 Query: 233 ITVELPDGFMKLLAMTPIGKE--------------TFFINNDK--QKMNATQFSIWFKAK 276 V L + LA ++ F + F + K Sbjct: 182 RMVPLSPPAREALADWLRVRDEAEAAGQKAGRVPSRFLFPGSGAAGHLTREYFYVLIKQI 241 Query: 277 ATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 A AGV+ + H +R AT GA + G + E YT D Sbjct: 242 AVLAGVDPSKVTPHTLRHAFATHLLAGGADLRVIQTLLGHADLSTTEIYTHVLD 295 >gi|242280626|ref|YP_002992755.1| integrase family protein [Desulfovibrio salexigens DSM 2638] gi|242123520|gb|ACS81216.1| integrase family protein [Desulfovibrio salexigens DSM 2638] Length = 307 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 43/288 (14%), Positives = 99/288 (34%), Gaps = 35/288 (12%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDF-----DYRKITTKHIRSGVESRKHTPSSAIQFLTS 139 +L+ + +++ Q D D K + + S ++ P S + + + Sbjct: 18 RNLSELTMKAYQKDLLQFKHFIPDSTDSIHDINKFILRDYIKFI-SNQYKPRSIKRKIAT 76 Query: 140 MRVLFKWAVRQEYVAINPCLSVE-RPKRKTEGIRPWTKEDMQQFKSF------------- 185 ++ F + R + + +P + + R + +K + + Sbjct: 77 LKSFFNFMERDDIIETSPFRKIHLKIDRSKILPKTISKSSINNLLKYTYTERAKYQLSGR 136 Query: 186 -WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQKTGTII-------TV 235 + E ++ E L +G+R S+ C+ L N I + + + Sbjct: 137 GYREATRDIAIIETLFMTGIRVSELCQITTSSMDLINEQIKITGKGKKERVIPICANNAL 196 Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFS 293 + + L + FF+N DK+ ++ + + G+ + + H R Sbjct: 197 LILREYETLYRDHLLPDSPFFLNRDKRPISDQSVRRIIRKYCSMCGIPEHVTPHMFRHTI 256 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTK---GADRIRLGIKNSRR 338 AT+ + G + G ++ E YT + R L +K+ R+ Sbjct: 257 ATMLLENGVDIRNIQTLLGHSSLSVTEIYTHVSLSSQREILSMKHPRK 304 >gi|224282680|ref|ZP_03646002.1| Integrase [Bifidobacterium bifidum NCIMB 41171] gi|310287139|ref|YP_003938397.1| Integrase/recombinase (XerD/RipX family) [Bifidobacterium bifidum S17] gi|313139838|ref|ZP_07802031.1| tyrosine recombinase xerD [Bifidobacterium bifidum NCIMB 41171] gi|309251075|gb|ADO52823.1| Integrase/recombinase (XerD/RipX family) [Bifidobacterium bifidum S17] gi|313132348|gb|EFR49965.1| tyrosine recombinase xerD [Bifidobacterium bifidum NCIMB 41171] Length = 322 Score = 120 bits (302), Expect = 2e-25, Method: Composition-based stats. Identities = 44/285 (15%), Positives = 91/285 (31%), Gaps = 45/285 (15%) Query: 85 GSLAVNSRISF----ESYFDQIIRKSGDFDYRKITTKHIR---SGVESRKHTPSSAIQFL 137 LA + ++ Y + G D I I + ++S + S + L Sbjct: 20 RGLARATVRAYESDLRRYLSWLAHTRGITDPDAIGKADIEEYVAQLDSDGDSARSKARRL 79 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG-------- 189 S+ ++A+ Q V+ + +V+ PK T +++ + + Sbjct: 80 ASIHEFHRFALAQHAVSDDVSATVKAPKSAQMLPDVLTIDEVSRLLDAIPDPHGTDAARG 139 Query: 190 ------------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITV 235 + R EF+ +G R S++ + + + + T K V Sbjct: 140 RAGIGALPDAVLLRDRALLEFMYATGCRVSEAVGMNLDDIDIDDAHVARLTGKGSKQRLV 199 Query: 236 ELPDGFMKLLAM--------------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281 L + + L + F+N ++++ K +AG Sbjct: 200 PLGEYACRALRRYLAEGRGTLEGRAKGTPDRRAVFLNKRGRRLSRQSVWEVIKLAGERAG 259 Query: 282 VNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 +++ H +R AT GA + G +V + YT Sbjct: 260 IDRPLHPHTLRHSFATHLIQGGADVRTVQELLGHASVTTTQIYTH 304 >gi|110644136|ref|YP_671866.1| site-specific tyrosine recombinase XerC [Escherichia coli 536] gi|123048654|sp|Q0TAR4|XERC_ECOL5 RecName: Full=Tyrosine recombinase xerC gi|110345728|gb|ABG71965.1| integrase/recombinase XerC [Escherichia coli 536] Length = 298 Score = 120 bits (302), Expect = 2e-25, Method: Composition-based stats. Identities = 41/270 (15%), Positives = 90/270 (33%), Gaps = 20/270 (7%) Query: 75 ISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITT------KHIRSGVESRK 127 + Y + L+ + ++++ + II + + + ++ + Sbjct: 8 VERYLRYLSVERQLSPITLLNYQRQLEAIIHFASENGLQSWQQCDVTMVRNFAVRSRRKG 67 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186 + L+++R F W V Q + NP V PK + +DM + Sbjct: 68 LGAAGLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMSRLLDIDI 127 Query: 187 --SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT--------VE 236 + R E + +GLR S+ ++HL + G+ V Sbjct: 128 NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAVA 187 Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSA 294 + ++ L + + F++ ++++A F K G+N H +R A Sbjct: 188 WIEHWLDLRDLFGSEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRHSFA 247 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTK 324 T ++ + G + + YT Sbjct: 248 THMLESSGDLRGVQELLGHANLSTTQIYTH 277 >gi|260905256|ref|ZP_05913578.1| tyrosine recombinase XerD [Brevibacterium linens BL2] Length = 315 Score = 120 bits (302), Expect = 2e-25, Method: Composition-based stats. Identities = 48/287 (16%), Positives = 92/287 (32%), Gaps = 32/287 (11%) Query: 68 PTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQ---IIRKSGDFDYRKITTKHIRSG- 122 P +L Y S + L+ NS ++ + + G ++ H+ + Sbjct: 13 PASLARAFETYLNSLRFERGLSRNSIDAYARDLARYGTWLNGQGMSHLGEVERTHVEAFA 72 Query: 123 --VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 + P + + L ++R +A+ + A +P V P+ + + +D++ Sbjct: 73 LHLLDENLAPRTRARALVAVRRFHGFALGEGLAATDPASEVSPPQEGLRLPKALSLDDIE 132 Query: 181 QFKS----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITV 235 + + E L +G R S++ + L ++ K G V Sbjct: 133 AMLATTGGEEPAQIRAAALLELLYATGARISEAVGVDLDDLDLETSLVRLYGKGGKERIV 192 Query: 236 EL----------------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK 279 P K + P G F+N +++ K Sbjct: 193 PFGSHAATALGAWVSRTRPSMAAKARSSAPAGA--LFLNARGTRLSRQTAWQIVKDAGEL 250 Query: 280 AGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 AG+ S H R AT + GA + G +V + YTK Sbjct: 251 AGLEAEVSPHTFRHSFATHLLEGGADIRVVQELLGHASVTTTQIYTK 297 >gi|152983278|ref|YP_001353923.1| phage-related integrase [Janthinobacterium sp. Marseille] gi|151283355|gb|ABR91765.1| phage-related integrase [Janthinobacterium sp. Marseille] Length = 342 Score = 120 bits (302), Expect = 2e-25, Method: Composition-based stats. Identities = 61/344 (17%), Positives = 113/344 (32%), Gaps = 35/344 (10%) Query: 2 TPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYI 61 T + LPP + + R R GK Y+F G R P + Y+ AL Sbjct: 6 TVNRHLPPHM-RARIRSGKTYYFFDLGGRPRKESPLGTD------YIEALRKYVELAGDE 58 Query: 62 NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121 T L +Y+ S A ++R S + + +I H++ Sbjct: 59 TP--VHEATFDDLSKKYKLE-EIPSKAESTRRVQNSDIKHLDKFFAKAPLGEIRPMHMQQ 115 Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAI-NPCLSVERPKRKTEGIRPWTKEDMQ 180 ++ K TP++A + ++ A Y NPC + +T +++ Sbjct: 116 FLQFHKATPTTANRCKRLFSSMWNKARAWGYTDEPNPCTGIAGFTLGKR--ETYTTDEV- 172 Query: 181 QFKSFWSEGSQP-RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD 239 FK+ W S+P R A + +G R D+ ++ + ++ SI+ KT + + + Sbjct: 173 -FKAVWECASEPLRDAMDLTYLTGQRPGDALKSTEHEISDSYLSIQQGKTKQKLRIAIVG 231 Query: 240 GFMKLLAMTPIGKE-------TFFINNDKQKMNATQFSIWFKAKATKAGVNKS------- 285 L+ K +N ++ F A KA Sbjct: 232 ELAALIDRIKERKRKYKVVHTALLVNTQGMQLTKAVLRKHFDAAREKACEKYPELEPEIK 291 Query: 286 ---AHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKG 325 + +R +A A+ G ++ Y + Sbjct: 292 AFWFYDLRAKAADDKAEE-IDEQAASDLLGHESTKTTRRHYLRR 334 >gi|227535113|ref|ZP_03965162.1| site-specific recombinase XerD [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227187254|gb|EEI67321.1| site-specific recombinase XerD [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 298 Score = 120 bits (302), Expect = 2e-25, Method: Composition-based stats. Identities = 43/268 (16%), Positives = 93/268 (34%), Gaps = 30/268 (11%) Query: 85 GSLAVNSRISFESYFDQ----IIRKSGDFDYRKITTKHIRSGV---ESRKHTPSSAIQFL 137 + + ++ S + + G D+R + +++ + + +S + + Sbjct: 15 RQYSPETVTAYLSDLREFQAFLKANGGFTDFRHVDDLDVQTYLTDLNKQDLARTSIARKI 74 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS----FWSEGSQPR 193 +S+R +++ R + V NP VE K+ + + + ++Q+ + R Sbjct: 75 SSLRSFYRYLTRIDVVKRNPFELVELKKQHHHLPQFFYEAEIQELFKTVAGKTPLDQRNR 134 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVE------------LPDG 240 E L +G+R S+ + + + N + K V L DG Sbjct: 135 ALLEVLYGTGIRVSECAKLTLNQVDFNTALLLIHGKGNKDRYVPFGQYAQQALRTYLKDG 194 Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQ----FSIWFKAKATKAGVNKSAHGVRKFSATI 296 L+A + F+N + + + K A ++ H +R AT Sbjct: 195 RQVLMAKSQAQHRYVFVNQYGRPITSRGIEYILDQLIKQTTLTANIH--PHMLRHSFATH 252 Query: 297 SADAGATAHELMATYGWKTVDQAETYTK 324 D GA + G ++ + YT Sbjct: 253 MLDHGADLRTVQELLGHASLSTTQIYTH 280 >gi|34580584|ref|ZP_00142064.1| integrase/recombinase [Rickettsia sibirica 246] gi|229586627|ref|YP_002845128.1| site-specific tyrosine recombinase XerD [Rickettsia africae ESF-5] gi|28261969|gb|EAA25473.1| integrase/recombinase [Rickettsia sibirica 246] gi|228021677|gb|ACP53385.1| Tyrosine recombinase XerD [Rickettsia africae ESF-5] Length = 306 Score = 120 bits (302), Expect = 2e-25, Method: Composition-based stats. Identities = 48/276 (17%), Positives = 99/276 (35%), Gaps = 38/276 (13%) Query: 85 GSLAVNSRISFESYF----DQIIR-KSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139 +L+ NS +S++ + + + K + + + + S S + +++ Sbjct: 15 RALSKNSILSYKRDLFDFQNYLAKHKLSELNITTENIRDWIEYLASNDLQARSINRKIST 74 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-----SEGSQPRL 194 ++ +++ + + + A NP L+V+ PK + + + ++ EG + Sbjct: 75 IKSYYEFLISENHTAFNPVLNVDLPKYQNKLPEILSIAQIKSLLEHCSQDNSPEGIRLNA 134 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNN---------IFSIKTQKTGTIITVELPDGFMKLL 245 L SGLR S+ + + N IFS+ + + V + + Sbjct: 135 MIHLLYASGLRVSELVSLKLADILTNKTSKGEVRKIFSVLGKGNKERVIVINEQAVISIA 194 Query: 246 AMTPIGKETFFINNDKQK--------------MNATQFSIWFKAKATKAGVN---KSAHG 288 I F+N K + M F+I K+ A AG+N S H Sbjct: 195 KYLAIRG--VFVNKAKPRNLIYLFPSSALAGYMTRQNFAILLKSAALYAGLNPEYISPHI 252 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 +R A+ + GA + G + + YT Sbjct: 253 LRHSFASHLLEGGADLRVIQELLGHADISTTQIYTH 288 >gi|229817386|ref|ZP_04447668.1| hypothetical protein BIFANG_02648 [Bifidobacterium angulatum DSM 20098] gi|229785175|gb|EEP21289.1| hypothetical protein BIFANG_02648 [Bifidobacterium angulatum DSM 20098] Length = 324 Score = 120 bits (302), Expect = 2e-25, Method: Composition-based stats. Identities = 43/277 (15%), Positives = 92/277 (33%), Gaps = 37/277 (13%) Query: 85 GSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIRSGV---ESRKHTPSSAIQFLT 138 L+ + ++ S D+ R++G + I+ H+ + +S + S + L Sbjct: 30 RGLSKATVTAYTSDLDRYCVWLREAGITEPASISRNHVEEYIAHLDSHGASARSKARNLA 89 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS-------- 190 S+ ++A+ Q VA + +V+ PK + T +++ + + Sbjct: 90 SIHEFHRFALAQHAVADDVSAAVKAPKGASTLPDVLTVDEVARLLDCAPVPAPGCVMDVP 149 Query: 191 -----QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKL 244 + + EF+ +G R S++ + + N + K V + + Sbjct: 150 HAVLMRDKALLEFMYATGCRVSEAVGTDLNDIDLNERVARLLGKGSKQRLVPVGEYACAA 209 Query: 245 LAM---------------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAH 287 + + F+N Q+M+ +A + K H Sbjct: 210 MTRYLDEGRSLLEGCAKSKAPERSAVFLNKRGQRMSRQSVWEVVNQAGKRAHIGKPLHPH 269 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 +R AT GA + G +V + YT Sbjct: 270 TLRHSFATHLIQGGADVRTVQELLGHASVTTTQIYTH 306 >gi|116494889|ref|YP_806623.1| integrase [Lactobacillus casei ATCC 334] gi|191638400|ref|YP_001987566.1| Tyrosine recombinase xerC [Lactobacillus casei BL23] gi|301066449|ref|YP_003788472.1| integrase [Lactobacillus casei str. Zhang] gi|122263693|sp|Q039E1|XERC_LACC3 RecName: Full=Tyrosine recombinase xerC gi|254799345|sp|B3WEA7|XERC_LACCB RecName: Full=Tyrosine recombinase xerC gi|116105039|gb|ABJ70181.1| tyrosine recombinase XerC subunit [Lactobacillus casei ATCC 334] gi|190712702|emb|CAQ66708.1| Tyrosine recombinase xerC [Lactobacillus casei BL23] gi|300438856|gb|ADK18622.1| Integrase [Lactobacillus casei str. Zhang] gi|327382429|gb|AEA53905.1| Site-specific recombinase [Lactobacillus casei LC2W] gi|327385628|gb|AEA57102.1| Site-specific recombinase [Lactobacillus casei BD-II] Length = 298 Score = 120 bits (302), Expect = 2e-25, Method: Composition-based stats. Identities = 43/268 (16%), Positives = 93/268 (34%), Gaps = 30/268 (11%) Query: 85 GSLAVNSRISFESYFDQ----IIRKSGDFDYRKITTKHIRSGV---ESRKHTPSSAIQFL 137 + + ++ S + + G D+R + +++ + + +S + + Sbjct: 15 RQYSPETVTAYLSDLQEFQAFLKANGGFTDFRHVDDLDVQTYLTDLNKQDLARTSIARKI 74 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS----FWSEGSQPR 193 +S+R +++ R + V NP VE K+ + + + ++Q+ + R Sbjct: 75 SSLRSFYRYLTRIDVVKRNPFELVELKKQHHHLPQFFYEAEIQELFKTVAGKTPLDQRNR 134 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVE------------LPDG 240 E L +G+R S+ + + + N + K V L DG Sbjct: 135 ALLEVLYGTGIRVSECAKLTLNQVDFNTALLLIHGKGNKDRYVPFGQYAQQALRTYLKDG 194 Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQ----FSIWFKAKATKAGVNKSAHGVRKFSATI 296 L+A + F+N + + + K A ++ H +R AT Sbjct: 195 RQVLMAKSQAQHRYVFVNQYGRPITSRGIEYILDQLIKQTTLTANIH--PHMLRHSFATH 252 Query: 297 SADAGATAHELMATYGWKTVDQAETYTK 324 D GA + G ++ + YT Sbjct: 253 MLDHGADLRTVQELLGHASLSTTQIYTH 280 >gi|254466241|ref|ZP_05079652.1| phage integrase [Rhodobacterales bacterium Y4I] gi|206687149|gb|EDZ47631.1| phage integrase [Rhodobacterales bacterium Y4I] Length = 313 Score = 120 bits (302), Expect = 2e-25, Method: Composition-based stats. Identities = 44/294 (14%), Positives = 97/294 (32%), Gaps = 32/294 (10%) Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGV 123 +W+ + A + N+ +++ + D+ + I + + Sbjct: 3 APAANFQWISTFLDAQAAETGASQNTLLAYGRDLKDLTAWLEHRSLDFSTASQDDIEAYL 62 Query: 124 ---ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 +++ S+ + L++++ ++++A + + NP + + P R+ + ++ Sbjct: 63 ISCDAQGLARSTRARRLSAVKQIYRFAFEEGWRQDNPAIQIRGPGREKRLPKTLEVIEVD 122 Query: 181 QFKSFW-----SEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTI 232 + SE + R E L +G+R ++ V + + + K G Sbjct: 123 RLLEAARQTGRSEADRLRNTCLMELLYATGMRVTELVSLPVSAARGDPRMLLILGKGGKE 182 Query: 233 ITVELPDGFMKLLAMT----------------PIGKETFFINNDKQKMNATQFSIWFKAK 276 V L + LA P + F + +F + K Sbjct: 183 RMVPLSPPAREALAQWLLVRDAAEDERELKGNPASRFLFPSRGKSGHLTRHRFYLLIKEL 242 Query: 277 ATKAGV---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 A G+ + H +R AT GA + A G + E YT D Sbjct: 243 AVTGGLSPDKVTPHTLRHAFATHLLANGADLRAIQALLGHADIATTEIYTHVLD 296 >gi|295396859|ref|ZP_06806987.1| tyrosine recombinase XerC [Aerococcus viridans ATCC 11563] gi|294974885|gb|EFG50584.1| tyrosine recombinase XerC [Aerococcus viridans ATCC 11563] Length = 311 Score = 120 bits (302), Expect = 2e-25, Method: Composition-based stats. Identities = 44/284 (15%), Positives = 89/284 (31%), Gaps = 34/284 (11%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV------E 124 +K L S+Y H + + ++ + D D ++ R + Sbjct: 6 IKNLFSDYLT--HEKQYSPETIKAYMADLDNFQAFMKDAGIAQLDQVAYRDIRIYLGNLQ 63 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 + S + L+S+R + + +E V+ NP V+ K + + + ++Q Sbjct: 64 RGGLSRKSISRHLSSLRSAYNLLLDRELVSENPFNYVKTAKTGLKLPDFFYESEIQSLFD 123 Query: 185 F----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIITVEL-- 237 + R EFL +G R S+ + + + K V + Sbjct: 124 SVQGSDPIALRNRALLEFLYGTGARVSEVRDLAINQVDLTADMVLLRGKGNKDRYVPIGS 183 Query: 238 --PDGFMKLLAMTPIGKET-----------FFINNDKQKMNATQ----FSIWFKAKATKA 280 D + L F+N +++ + K AT Sbjct: 184 FCHDALVDYLENGRSQLMAKGHYEDNEHVFLFVNYKGEQLTSQGIAYILDQIVKNSATTL 243 Query: 281 GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 ++ H +R AT + GA + G ++ + YT Sbjct: 244 SIH--PHKLRHSFATHLLNNGADIRTVQELLGHASLSTTQIYTH 285 >gi|169826675|ref|YP_001696833.1| hypothetical protein Bsph_1093 [Lysinibacillus sphaericus C3-41] gi|168991163|gb|ACA38703.1| conserved hypothetical protein [Lysinibacillus sphaericus C3-41] Length = 632 Score = 120 bits (302), Expect = 2e-25, Method: Composition-based stats. Identities = 50/310 (16%), Positives = 102/310 (32%), Gaps = 24/310 (7%) Query: 25 FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHW 84 RK + R +PY ++ Y + +I+EY S Sbjct: 320 VRKKYLERSPIPYKYDKLENNRYWEISNLFVNNDS------------RKIINEYLLSMKL 367 Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV--ESRKHTPSSAIQFLTSMRV 142 +L+ + + + ++ + + +T + IR + ++ + LT + Sbjct: 368 ENLSAGTIYQYRFFLNKFFKDK-RENCLSLTPEEIRKYFIPLQKGLKAATIKKQLTILSS 426 Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG--SQPRLAFEFLL 200 + + V + Y+ ++P P++ + KE++ + + + + R+ E LL Sbjct: 427 FYNFCVDEGYIHMSPIKKRWFPRKSKSIPKFLEKEEIAKVRQLCEKRNQLRNRVMVELLL 486 Query: 201 YSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDG----FMKLLAMTPIGKETF 255 SG R S+ + N + K I V + +LL Sbjct: 487 TSGCRISEVNMLNKSDIDLENRTAQVLGKGKKIREVHFSETCAILLERLLESYIDEHPAL 546 Query: 256 FINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGW 313 FI+ ++ Q + A + S H R AT GA + G Sbjct: 547 FISERGTRLGIRQMQKIVEQVGIDAKIKSSLHPHRFRHTFATELLTKGADLSFIADELGH 606 Query: 314 KTVDQAETYT 323 K + + Y Sbjct: 607 KQLQTTKIYA 616 Score = 40.0 bits (92), Expect = 0.50, Method: Composition-based stats. Identities = 15/102 (14%), Positives = 41/102 (40%), Gaps = 6/102 (5%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS--S 132 I+EY + + + + + + + D + + ++ ++S K + + Sbjct: 246 INEYLLNLKHKNKSHRTIEEYRFILQAYFKDT-DTHFTLLKNYDFQNWIQSYKGVKNEKT 304 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174 +++ R + + VR++Y+ +P + K E R W Sbjct: 305 LDNYMSIFRSFYIFCVRKKYLERSP---IPYKYDKLENNRYW 343 >gi|317481432|ref|ZP_07940499.1| phage integrase [Bacteroides sp. 4_1_36] gi|316902417|gb|EFV24304.1| phage integrase [Bacteroides sp. 4_1_36] Length = 387 Score = 120 bits (302), Expect = 2e-25, Method: Composition-based stats. Identities = 52/298 (17%), Positives = 110/298 (36%), Gaps = 31/298 (10%) Query: 65 RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS-----GDFDYRKITTKHI 119 +K TL +++Y +A L+ S S + ++ +++ Sbjct: 89 KKARMTLSAWVAKY--TAEENGLSPASMRSKRNAQARVEEYLLYIGKPTLALKEVDKDFC 146 Query: 120 RSGVESRKH-TPSSAIQFLTS---------MRVLFKWAVRQEYVAINPCLSVE---RPKR 166 + + K T + + L+S + AV + + NP +E +P++ Sbjct: 147 KGFIAFLKTCTFNQGKKTLSSTTCRIFMNRLAAALNKAVSEGMLDRNPFKLLETKEKPQK 206 Query: 167 KTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL----QNNIF 222 + T E+++Q + + AF F ++GLR SD + Sbjct: 207 LSAMREFLTIEELRQLMATPCRYDIVKKAFLFSCFTGLRYSDMMTLKWSEIHTAADGKTL 266 Query: 223 SI--KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA 280 I + KT +T+ L + +K + + F + ++ +T + +A Sbjct: 267 YIEHQQVKTKNTVTIPLSNEALKWMPRKSKDDDRVF---HQLRITSTTVEVVLGEWMQEA 323 Query: 281 GVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336 G+ K + H R +AT+ GA + + G +++ E Y K D+ ++ N Sbjct: 324 GIQKHITYHCSRHTAATLLLTLGADLYTVSKILGHRSIRMTEVYAKIVDKKKIETMNL 381 >gi|187736389|ref|YP_001878501.1| integrase family protein [Akkermansia muciniphila ATCC BAA-835] gi|187426441|gb|ACD05720.1| integrase family protein [Akkermansia muciniphila ATCC BAA-835] Length = 295 Score = 120 bits (302), Expect = 2e-25, Method: Composition-based stats. Identities = 38/268 (14%), Positives = 83/268 (30%), Gaps = 23/268 (8%) Query: 85 GSLAVNSRISFESYFDQIIR-----KSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139 L+ ++S ++ R +G T ++ R SS + Sbjct: 16 KGLSTAYQLSVRQTLEEFARFLEMDNTGLAQTGIDTLSAFLRHLQDRGMARSSMRVEMVH 75 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-----SEGSQPRL 194 +R+ F+W + +P + +E P++ ++ + G + R Sbjct: 76 LRIFFRWLAGTGILEKDPSVFLEMPRQGLSLPHVLDQKTVSNLLESIDIQDIPLGCRDRA 135 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT-VEL----PDGFMKLLAMTP 249 E + G+R S+ ++ + ++ G V + D L Sbjct: 136 LLEMIYACGMRVSEIINCKLESFDKDEAFVRVLGKGNKTRLVPVGRSALDALQMYLEKGR 195 Query: 250 IG------KETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAG 301 K F+ + + + + +A AG+ + H +R AT + G Sbjct: 196 PKLVRTGTKSHIFLTVRGRPLTRERIRQILRERARAAGLEQHVFPHILRHSFATHLLENG 255 Query: 302 ATAHELMATYGWKTVDQAETYTKGADRI 329 A + G + + YT + Sbjct: 256 ADLRIIQEMLGHADISTTQIYTHLEQQR 283 >gi|197123191|ref|YP_002135142.1| tyrosine recombinase XerC [Anaeromyxobacter sp. K] gi|196173040|gb|ACG74013.1| tyrosine recombinase XerC [Anaeromyxobacter sp. K] Length = 343 Score = 120 bits (302), Expect = 2e-25, Method: Composition-based stats. Identities = 49/285 (17%), Positives = 94/285 (32%), Gaps = 30/285 (10%) Query: 76 SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRKHTPSSA 133 Y S + ++R +++ Q D + +R + + + Sbjct: 20 DAYLASE--KRASPHTRKAYQVDLAQYAAYLADQGQPLVPSSPALVRGFLARQAGAAGAV 77 Query: 134 I--QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF------KSF 185 + L+++R L+++ VR+ NP +V PKR +E++ + Sbjct: 78 SLGRKLSALRSLYRFLVREGLAPGNPARAVASPKRPKRLPEVLPEEEVAALVETPDAATE 137 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVEL------- 237 + R E L SGLR S+ ++ L ++ K V Sbjct: 138 APLALRDRAFLELLYGSGLRVSELTGLDLEDLDLAGGLVRVLGKRNKERIVPFGAPAAEA 197 Query: 238 ----PDGFMKLLAMTP---IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHG 288 DG +LA P + F+N ++ + + +G+ + H Sbjct: 198 LRRYLDGARPVLATGPDHARAGDAVFLNFRGGRLTSRSVARRLDGWVLASGLPRHVHPHV 257 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 +R AT GA + G ++ + YT D RL Sbjct: 258 LRHCFATHLLGNGADLRGIQELLGHASLSTTQRYTH-LDWKRLAA 301 >gi|163784459|ref|ZP_02179335.1| Phage integrase [Hydrogenivirga sp. 128-5-R1-1] gi|159880274|gb|EDP73902.1| Phage integrase [Hydrogenivirga sp. 128-5-R1-1] Length = 283 Score = 120 bits (302), Expect = 2e-25, Method: Composition-based stats. Identities = 47/270 (17%), Positives = 98/270 (36%), Gaps = 22/270 (8%) Query: 67 KPTTLKWLISEYRKSAHW--GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124 K L I EY W + + + + ++ GD + I KH+ + Sbjct: 13 KKIKLSEFIEEYL---EWCRENRSDETFKKAQYVLNKFKDYIGDIYVKSINKKHMDDYIS 69 Query: 125 SR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 + ++A + +++ AV EYV +P + K + + + + +++ Sbjct: 70 KLLSEGLSRTTANIHIRTIKSALTKAVEWEYVKEHPLRGYKLLKIQQKPPKFLLPQQIKE 129 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT--IITVELPD 239 + E + F +Y+G+R + R +H+ N I +K+ + + + Sbjct: 130 VEKIIDEEIWQFV-FRLFIYTGMRLGEITRLKWEHINLNREIITVEKSKSFHSRVIPIHP 188 Query: 240 GFMK--LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG-VNKSAHGVRKFSATI 296 K + IGK F K++ + +F+ AG + H +R A++ Sbjct: 189 TLKKDIIRYKKDIGKVVPF----KRRYIQERLKNYFRK----AGYPDLRVHDLRHTFASL 240 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGA 326 AG + G ++ E Y A Sbjct: 241 MVMAGVDLKTVQELLGHQSYRTTEIYAHLA 270 >gi|217975610|ref|YP_002360280.1| integrase family protein [Shewanella baltica OS223] gi|217500805|gb|ACK48857.1| integrase family protein [Shewanella baltica OS223] Length = 451 Score = 120 bits (302), Expect = 2e-25, Method: Composition-based stats. Identities = 55/307 (17%), Positives = 116/307 (37%), Gaps = 13/307 (4%) Query: 32 RIRLPYPHESTFIPAYMSALTGSTP--KREYINSPRKKPTTLKWLISEYRKSAHWGSLAV 89 R R+ P + + A TG + E+ + + K + Sbjct: 54 RTRILAPVSALTVKAAREKATGQLQAWREEHTQPSMSASPRFDVFVEQTWKPMIFEHWKP 113 Query: 90 NSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESRKHTP-SSAIQFLTSMRVLFKWA 147 +++ S ++ ++ G + I K +++ + T +A + L +++ +FK A Sbjct: 114 STKRSVLPALNRRLLAHFGRYPLHMINHKMVQAWFDEISKTRKGAANRNLDTLQSVFKLA 173 Query: 148 VRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-----GSQPRLA--FEFLL 200 +RQ + NPC+ + + KR+ R + +MQ+ E GS + A LL Sbjct: 174 LRQGHCLTNPCIGIRQNKRRV-LNRFLSVAEMQRLSVALDECEKVGGSIAQCADILRLLL 232 Query: 201 YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINND 260 +G R S+ ++++ N + KTG + + + + +L+ T Sbjct: 233 LTGCRLSEITFLKGEYVRGNELHLPDSKTGAKV-LYIGQAAVDILSRYHCKANTELFPMK 291 Query: 261 KQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320 + + S+W + + + H +R A+ + G + + + G K V Sbjct: 292 QGASTSLVQSLWLRLRKQIGIEDVRLHDLRHTFASYAVMDGCSIPMVASLLGHKKVTMTL 351 Query: 321 TYTKGAD 327 YT D Sbjct: 352 RYTHVGD 358 >gi|304316827|ref|YP_003851972.1| integrase [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778329|gb|ADL68888.1| integrase family protein [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 327 Score = 120 bits (302), Expect = 2e-25, Method: Composition-based stats. Identities = 61/304 (20%), Positives = 114/304 (37%), Gaps = 28/304 (9%) Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV-- 123 + P T+K EY + + V +S +S FDQI D D I + + Sbjct: 28 RSPNTVKAY--EYDLVLFFRFIKVRKNLSSDSDFDQI--DISDVDISLIESIDLNDLYAY 83 Query: 124 -----ESRKHTPSSAIQFLTSMRVLFKWAV-RQEYVAINPCLSVERPKRKTEGIRPWTKE 177 R +TP + + + S+R + + +++ + NP L +E PK T + Sbjct: 84 LSFVTHERSNTPPARARKVASLRSFYNYLYAKRKVITKNPALELESPKLGIRQPVYLTLD 143 Query: 178 DMQQFKSFWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235 + + + R L GLR S+ + ++++ ++ K TV Sbjct: 144 ESMKLLDSIDGPFKERDYAIITLFLNCGLRLSELANINISDIKDDKLTVI-GKGNKQRTV 202 Query: 236 ELPDGFM----KLLAMTP----IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--- 284 L D + + L + P K+ F++ Q+++ K A ++ Sbjct: 203 YLNDACISAINEYLKVRPHDGVKDKKALFLSKRLQRISIKTIQYIVKKHLKDANLDGKKY 262 Query: 285 SAHGVRKFSATISADAGA-TAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343 S H +R +AT+ G L G V + YT D +L S+ S + Sbjct: 263 STHKLRHTAATLMYRYGKVDIRTLQRLLGHSNVSTTQIYTH-VDDSQLRDAVSKNPLSEL 321 Query: 344 DSDD 347 +S++ Sbjct: 322 NSNN 325 >gi|15605070|ref|NP_219854.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis D/UW-3/CX] gi|76789073|ref|YP_328159.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis A/HAR-13] gi|166154559|ref|YP_001654677.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis 434/Bu] gi|166155434|ref|YP_001653689.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|237802772|ref|YP_002887966.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis B/Jali20/OT] gi|237804694|ref|YP_002888848.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis B/TZ1A828/OT] gi|255348711|ref|ZP_05380718.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis 70] gi|255503251|ref|ZP_05381641.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis 70s] gi|255506929|ref|ZP_05382568.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis D(s)2923] gi|301335822|ref|ZP_07224066.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis L2tet1] gi|34222768|sp|O84351|XERC_CHLTR RecName: Full=Tyrosine recombinase xerC gi|123606950|sp|Q3KM11|XERC_CHLTA RecName: Full=Tyrosine recombinase xerC gi|254799329|sp|B0B7R6|XERC_CHLT2 RecName: Full=Tyrosine recombinase xerC gi|254799330|sp|B0BBY1|XERC_CHLTB RecName: Full=Tyrosine recombinase xerC gi|3328768|gb|AAC67942.1| Integrase/recombinase [Chlamydia trachomatis D/UW-3/CX] gi|76167603|gb|AAX50611.1| DNA integration/recombination/inversion protein [Chlamydia trachomatis A/HAR-13] gi|165930547|emb|CAP04042.1| DNA recombination protein [Chlamydia trachomatis 434/Bu] gi|165931422|emb|CAP06996.1| DNA recombination protein [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|231272994|emb|CAX09906.1| DNA recombination protein [Chlamydia trachomatis B/TZ1A828/OT] gi|231274006|emb|CAX10799.1| DNA recombination protein [Chlamydia trachomatis B/Jali20/OT] gi|289525388|emb|CBJ14865.1| DNA recombination protein [Chlamydia trachomatis Sweden2] gi|296434940|gb|ADH17118.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis E/150] gi|296435866|gb|ADH18040.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis G/9768] gi|296436792|gb|ADH18962.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis G/11222] gi|296437726|gb|ADH19887.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis G/11074] gi|296438660|gb|ADH20813.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis E/11023] gi|297140225|gb|ADH96983.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis G/9301] Length = 315 Score = 120 bits (302), Expect = 2e-25, Method: Composition-based stats. Identities = 37/223 (16%), Positives = 80/223 (35%), Gaps = 18/223 (8%) Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 H+ + + L++++ ++ V+ + + NP + P+ E P T E + + Sbjct: 83 HSKRTVRRRLSAIKSFARFCVKNQLIPENPAEMIRGPRLPQELPSPLTYEQVLALMAAPE 142 Query: 188 E----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPD-- 239 G + R E SGLR S+ + +++ I+ K V + Sbjct: 143 LDKVTGFRDRCLLELFYSSGLRISEITALNRADIDFQSHLLHIR-GKGKKERIVPMTKVA 201 Query: 240 --GFMKLLAMTPI-----GKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVR 290 L + F+N ++++ F+ K G++ S H +R Sbjct: 202 VQWLQDYLNHPDRASVEQDHQACFLNRFGKRLSTRSIDRKFQQYLLKTGLSGSITPHTIR 261 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 AT + G + G +++ YT + +++ I Sbjct: 262 HTIATHWLERGMDLKTIQLLLGHTSLETTTIYTHVSMKLKKQI 304 >gi|284007611|emb|CBA73220.1| phage integrase [Arsenophonus nasoniae] Length = 336 Score = 120 bits (302), Expect = 2e-25, Method: Composition-based stats. Identities = 66/335 (19%), Positives = 118/335 (35%), Gaps = 29/335 (8%) Query: 7 LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGS-----TPKREYI 61 +PP + K R+G Y +R R R Y A A++ + T K + + Sbjct: 1 MPPNLYK---RNG--YYSYR---DPRTRKEYGLGRNKAYAINEAISANQLLLNTEKVKPL 52 Query: 62 NSPRKKPTT--LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119 + + Y + L + ++ I + + + ITTK I Sbjct: 53 TERIDGQGSVYFHEFLDRYEEILKTRGLREKTLKDYKQRIGVIRKGFVNAPIQNITTKEI 112 Query: 120 RSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177 ++ + ++A + + F+ A+ + INP S + PK K + R + E Sbjct: 113 ADFLQLSINEERITTAKLMRSLLNDCFREAISLGLIQINPVTSTKTPKIKIQRAR-LSLE 171 Query: 178 DMQQFKSFWSEGSQPRL-AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236 D + G A + L +G R SD + + + + I QKTG+ I + Sbjct: 172 DFNTILGLINNGHHWLTHAMKLALVTGQRVSDVSKIKYKDIHDGKLWIIQQKTGSKIAIP 231 Query: 237 LPDGFMKLLAMTPIGK----ETFFINNDKQKMNATQFSIWFKAKATKAGVNK-----SAH 287 L + I F INN+ K+ + S F+ + +N S H Sbjct: 232 LDIELYGIKLSKTIADCVNNSEFVINNNGNKITVERISKEFRRFRDISQLNWVGEPPSFH 291 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 +R SA + + + G K+ Y Sbjct: 292 EIRSLSARLYTETMGSNFA-QKLLGHKSATMTAKY 325 >gi|15892414|ref|NP_360128.1| site-specific tyrosine recombinase XerD [Rickettsia conorii str. Malish 7] gi|34222952|sp|Q92IC9|XERD_RICCN RecName: Full=Tyrosine recombinase xerD gi|15619566|gb|AAL03029.1| integrase/recombinase [Rickettsia conorii str. Malish 7] Length = 306 Score = 120 bits (302), Expect = 2e-25, Method: Composition-based stats. Identities = 45/275 (16%), Positives = 99/275 (36%), Gaps = 36/275 (13%) Query: 85 GSLAVNSRISFESYF----DQIIR-KSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139 +L+ NS +S++ + + + K + + + + S S + +++ Sbjct: 15 RALSKNSILSYKRDLFDFQNYLAKHKLSELNITTENIRDWIEYLASNDLQARSINRKIST 74 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-----SEGSQPRL 194 ++ +++ + + + A NP L+V+ PK + + + ++ EG + Sbjct: 75 IKSYYEFLISENHTAFNPVLNVDLPKYQNKLPEILSIAQIKSLLEHCSQDNSPEGIRLNA 134 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNI---FSIKT-----QKTGTIITVELPDGFMKLLA 246 L SGLR S+ + + N ++ K + + + + +A Sbjct: 135 MIHLLYASGLRVSELVSLKLADILTNKTSKGEVRKIFSVLGKGNKERVIVINEQAVISIA 194 Query: 247 MTPIGKETFFINNDKQK--------------MNATQFSIWFKAKATKAGVN---KSAHGV 289 + F+N K + M F+I K+ A AG+N S H + Sbjct: 195 KYLTIRG-VFVNKAKPRNLIYLFPSSALAGYMTRQNFAILLKSAALYAGLNPEYISPHIL 253 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 R A+ + GA + G + + YT Sbjct: 254 RHSFASHLLEGGADLRVIQELLGHADISTTQIYTH 288 >gi|294500946|ref|YP_003564646.1| tyrosine recombinase XerC [Bacillus megaterium QM B1551] gi|294350883|gb|ADE71212.1| tyrosine recombinase XerC [Bacillus megaterium QM B1551] Length = 300 Score = 120 bits (302), Expect = 2e-25, Method: Composition-based stats. Identities = 40/236 (16%), Positives = 89/236 (37%), Gaps = 20/236 (8%) Query: 115 TTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174 + + + ++++ S + ++ +R +++ R+E V NP V PK++ R Sbjct: 55 DARLFLTRLYEKQYSKRSMSRKISCLRTFYRYLNREELVEDNPFALVTLPKKEERNPRFL 114 Query: 175 TKEDMQQFKSF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230 +E++ + G + + E L +G+R S+ + + ++ ++ G Sbjct: 115 YEEEIVKLFQMNDLTTPLGQRNQSLLELLYATGIRVSECASIKLSDIDFSLQTLLVYGKG 174 Query: 231 TI-------------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKA-- 275 + V + +G LL P + F+N + + Sbjct: 175 KKQRYVPFGCYAKGALRVYIDNGRKLLLKKAPSDTHSLFLNYKGTPLTDRGIRLVIDQLV 234 Query: 276 KATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIR 330 K T ++ S H +R AT + GA + G + + + YT DR++ Sbjct: 235 KKTAENIHISPHVLRHTFATHMLNEGADLRTVQEMLGHEHLSTTQIYTHVTKDRLK 290 >gi|300088762|ref|YP_003759284.1| integrase family protein [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299528495|gb|ADJ26963.1| integrase family protein [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 304 Score = 120 bits (302), Expect = 2e-25, Method: Composition-based stats. Identities = 42/270 (15%), Positives = 85/270 (31%), Gaps = 28/270 (10%) Query: 86 SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE---------SRKHTPSSAI-- 134 + + ++ + R +G+ + ++ P SA Sbjct: 25 GRSPATISAYRRDLALVARVAGELTPGIVCRAVTAGLLDQVFSAGAVIESVRGPRSAASL 84 Query: 135 -QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS--- 190 + ++R F WA V NP S+ + + T + ++ + Sbjct: 85 HRMKAAVRAFFAWASEAGVVDDNPARSIRMHRLPRKLPVFLTAAEKKRLLKELKGRTDFF 144 Query: 191 --QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE---------LPD 239 + R E LL +G+R + + + + ++ + G + V L Sbjct: 145 ALRDRAMIEVLLGTGIRLGELAALDMDDIDLDAKHLRVRAKGNVPQVNFIKTDLRTLLRR 204 Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS 297 + E F++N ++ Q + KAG+ K + HG+R AT Sbjct: 205 YLAERRRHGRPEMEALFLSNRDGRLCQRQIANRLAHWLRKAGIEKELTPHGLRHTFATHL 264 Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGAD 327 A + G + V + YT D Sbjct: 265 YGATNDLLVVQRALGHRDVSTTQIYTHLVD 294 >gi|189183655|ref|YP_001937440.1| putative integrase [Orientia tsutsugamushi str. Ikeda] gi|189184721|ref|YP_001938506.1| putative integrase [Orientia tsutsugamushi str. Ikeda] gi|189180426|dbj|BAG40206.1| putative integrase [Orientia tsutsugamushi str. Ikeda] gi|189181492|dbj|BAG41272.1| putative integrase [Orientia tsutsugamushi str. Ikeda] Length = 372 Score = 120 bits (302), Expect = 2e-25, Method: Composition-based stats. Identities = 53/282 (18%), Positives = 105/282 (37%), Gaps = 18/282 (6%) Query: 54 STPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK 113 R + T K L Y + A I++E Y D++ + +K Sbjct: 66 ENENRIKERERKANDITFKELCYRYIE-----EYAKIYTINWEEYTDRVHTYAQSLYGKK 120 Query: 114 ITTKHIRSGVE-----SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168 I+ + + S++ ++A L ++R +F A++ + NP L +E+ K + Sbjct: 121 ISQIRMSDIQQIFNDISKEGKYATANLLLATLRTMFNKAIKWGLIENNPTLGIEQHKLQA 180 Query: 169 EGIRPWTKEDMQQFKSFWSEGSQP--RLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSI 224 R + + M + + P R LY+G R S+ ++ I+ I Sbjct: 181 RERR-LSYDKMGRLLHVLCGETTPLIRDFALLALYTGARKSNVLEMEWDNIDFERKIWHI 239 Query: 225 KTQKTGTIITVELPDGFMKLLAMTPIGKET--FFINNDKQKMNATQFSIWFKAKATKAGV 282 K G + L D M++L E+ + + + + + + KAG+ Sbjct: 240 PKTKNGKAQNIPLTDEAMEILQARKFTSESKWVLPSATSESGHLERPNNSWHRVCKKAGI 299 Query: 283 -NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 N H +R+ A+ D GA+ + + + +YT Sbjct: 300 KNLRIHDLRRTFASCMGDVGASQRTISIALNHISPESTISYT 341 >gi|126741189|ref|ZP_01756869.1| putative integrase for prophage CP-933U [Roseobacter sp. SK209-2-6] gi|126717712|gb|EBA14434.1| putative integrase for prophage CP-933U [Roseobacter sp. SK209-2-6] Length = 313 Score = 120 bits (302), Expect = 2e-25, Method: Composition-based stats. Identities = 53/298 (17%), Positives = 101/298 (33%), Gaps = 31/298 (10%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK----HIRSGVESRK 127 +I Y+ SAH+ LA ++ +E Y D + + G K IR+ + Sbjct: 14 SAVIRRYKNSAHFKILAPRTKDDYEKYLDSLEEEFGPDPIMMFEEKEALSEIRTWKDQWS 73 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQE--YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 H+P + + L WA ++ V + R + W E++Q K Sbjct: 74 HSPRQYDYATSIVTRLLNWAKAEDTSIVTHFHM-DIARIYKSKRAHLVWLPEEIQALKDV 132 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVELPDGF 241 +E + GL D +H+ + K KTG + + + Sbjct: 133 ANE--RETRIVVAASEGGLTPQDIGLLKREHVQRTPKGRRLFFKRTKTGNPVAIPVTPAL 190 Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG-----------VNKSAH--G 288 +L+ TP G+E ++ + ++ + S + + + H Sbjct: 191 AELIDNTPKGQEYLVVSLEGHRLQPERASGIVRDLRNRVNALAKDDPAKYSIRDELHLYD 250 Query: 289 VRKFSATISADAGATAHELMATYGW---KTVDQAETYTKGADRIRLGIKNSRRISSVV 343 +R +AT AG + E+ T GW + E Y + R+++ Sbjct: 251 MRGTAATELLRAGCSLEEIAITMGWGLRHASNIIEKYVALVPEK--SDEVLRKLAEAR 306 >gi|312879576|ref|ZP_07739376.1| integrase family protein [Aminomonas paucivorans DSM 12260] gi|310782867|gb|EFQ23265.1| integrase family protein [Aminomonas paucivorans DSM 12260] Length = 294 Score = 120 bits (302), Expect = 2e-25, Method: Composition-based stats. Identities = 43/270 (15%), Positives = 86/270 (31%), Gaps = 17/270 (6%) Query: 70 TLKWLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKS------GDFDYRKITTKHIRSG 122 +L L+ + + + + N+ +++ Q + G + + Sbjct: 4 SLSSLVDGFLDQLRYRLNRSENTTVNYAVDLAQFVEFLQLEGVEGPEGINRDRVRGFLRS 63 Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 + P+SA + L+S+R + R+ V +P V PK R D+ + Sbjct: 64 LMGYGFAPTSAARKLSSVRGFTAYLTREGLVEQDPAAGVRGPKLPANLPRALAYPDVVRL 123 Query: 183 KSFWSEGSQP---RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE-- 236 G RL E L SGLR S++ + L+ ++ K V Sbjct: 124 LEEGPGGRHAQRDRLMLELLYGSGLRVSEAAGLDWEDLEPEERWLRVLGKGQKGRAVPFG 183 Query: 237 --LPDGFMKLLAMTPIGKETFFINNDKQKM-NATQFSIWFKAKATKAGVNK-SAHGVRKF 292 + + + F A + G+ + H +R Sbjct: 184 RGVKELLQDWRPDPVTRQGPVFPGERGAPRITPRTIHRLVTQSARRVGLAGVTPHTLRHS 243 Query: 293 SATISADAGATAHELMATYGWKTVDQAETY 322 AT + GA+ + G +++ + Y Sbjct: 244 FATHLLEGGASLRVVQELLGHESLLTTQRY 273 >gi|262037917|ref|ZP_06011342.1| tyrosine recombinase XerC [Leptotrichia goodfellowii F0264] gi|261748060|gb|EEY35474.1| tyrosine recombinase XerC [Leptotrichia goodfellowii F0264] Length = 315 Score = 120 bits (302), Expect = 2e-25, Method: Composition-based stats. Identities = 54/294 (18%), Positives = 104/294 (35%), Gaps = 33/294 (11%) Query: 47 YMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS 106 Y +TG + I S +K ++EY + + ++ + SF +Y + +++ Sbjct: 20 YEEVITGKSYN--TIKSYKKDIMQFIDYLNEYEEIDEFENVETITFRSFIAYLNSTSKEN 77 Query: 107 GDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166 D E + + S + ++++R FK+ ++ V N + PK Sbjct: 78 ND---------------ERKVVSKRSINRKISALRTFFKYLQEKKIVKTNKVNYITMPKF 122 Query: 167 KTEGIRPWTKEDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222 + E +ED+ + + + G + RL E L SG+R S+ + Sbjct: 123 EKELPNVLGREDINKLRDAVNTSKITGIRDRLIIELLYSSGIRASELIDLNEYMINIEER 182 Query: 223 SIKTQKTGTIITV-ELPDGFMKLLAMTPIG---------KETFFINNDKQKMNATQFSIW 272 ++ G + + K L K+ F N+ +K+ Sbjct: 183 ELRVIGKGNKERITFFSENSKKWLEKYIEEKKEKYSNYTKDVVFANSKGEKLTTRSLRRL 242 Query: 273 FKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 A KAG+ K + H R AT + G L G ++ + YT Sbjct: 243 IADYAKKAGLQKEVTPHVFRHTFATELLNNGVDIRYLQELLGHSSISTTQVYTH 296 >gi|310658549|ref|YP_003936270.1| site-specific tyrosine recombinase xerc [Clostridium sticklandii DSM 519] gi|308825327|emb|CBH21365.1| putative site-specific tyrosine recombinase XerC [Clostridium sticklandii] Length = 308 Score = 120 bits (302), Expect = 2e-25, Method: Composition-based stats. Identities = 33/256 (12%), Positives = 89/256 (34%), Gaps = 21/256 (8%) Query: 90 NSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE----SRKHTPSSAIQFLTSMRVLFK 145 + F + + ++ + IR+ + +++T + + + ++ FK Sbjct: 35 SYTSDFRILEEYLKERNMKVSIETLNVATIRTFIHFLRLEKEYTNETIRRKIYALGSFFK 94 Query: 146 WAVRQEYV--AINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-----SEGSQPRLAFEF 198 + V EY+ NP + PK++ + ++++++ + + + Sbjct: 95 FLVENEYIGMDKNPMSKIRAPKKEEKLPIYLSEKEIRTLLDTIMKTGGKDAIRDKAIISL 154 Query: 199 LLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTIITVELPDGFMKLLAM-----TPIG 251 +GLR + + + + K + +P+ + L PI Sbjct: 155 FAMTGLRRMELINLNWEDVDFGQKTIKVTMGKGKKQRILPMPETLYQDLLAYMNNSLPIT 214 Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSATISADAGATAHELM 308 FI ++ +++N + F+ +AG+ + H +R A++ G + Sbjct: 215 NTALFITSNNKRVNFRGMNNLFQKYIKRAGLSGKGYTLHKLRHSYASLLVQQGVDISIVK 274 Query: 309 ATYGWKTVDQAETYTK 324 G + + Y Sbjct: 275 ELMGHSDFNSTKIYVH 290 >gi|312871428|ref|ZP_07731523.1| putative tyrosine recombinase XerC [Lactobacillus iners LEAF 3008A-a] gi|311093081|gb|EFQ51430.1| putative tyrosine recombinase XerC [Lactobacillus iners LEAF 3008A-a] Length = 307 Score = 120 bits (302), Expect = 2e-25, Method: Composition-based stats. Identities = 35/279 (12%), Positives = 98/279 (35%), Gaps = 26/279 (9%) Query: 72 KWLISEYRKS-AHWGSLAVNSRISFESYFDQ----IIRKSGDFDYRKITTKHIR---SGV 123 + Y + + ++N+ ++ + + G D+ K++++ I + Sbjct: 5 DDFLKLYYNYLKNERNYSINTCKAYMDDLSEARTFFVENGGFIDWIKLSSRDIEIFIQYL 64 Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 +K S+ + ++++R +++ ++ + +NP + + ++M + Sbjct: 65 AQKKDKRSTQSRKISTLRSFYRFLNKRNIIPVNPVELISLRGDHKKLPEFLYNDEMVKVL 124 Query: 184 S----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKT-------G 230 G + E +G+R S+ ++ + N+ + + G Sbjct: 125 KSISTTTPLGLRNMALLELFYATGMRVSEIANLKLEQIDFELNLILVHGKGNKDRYVAFG 184 Query: 231 TIITVELPDGFMKLLAMT---PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS-- 285 L + ++ F+N++ ++ + K AG++ S Sbjct: 185 EEAKTALNNYLVEARKKLLLHKTDYGYVFLNSNGNRITSRGLEYIIKNIFLNAGISASVH 244 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R AT + GA + G +++ + YT Sbjct: 245 PHMLRHTFATQMLNNGADLRTVQELLGHESISTTQIYTH 283 >gi|302038654|ref|YP_003798976.1| tyrosine recombinase XerD [Candidatus Nitrospira defluvii] gi|300606718|emb|CBK43051.1| Tyrosine recombinase XerD [Candidatus Nitrospira defluvii] Length = 299 Score = 120 bits (302), Expect = 2e-25, Method: Composition-based stats. Identities = 49/275 (17%), Positives = 100/275 (36%), Gaps = 26/275 (9%) Query: 75 ISEYRKSAH-WGSLAVNSRISFESY---FDQIIRKSGDFDYRKITTKHIRSGVESRK--- 127 I Y L+ N+ ++++ F +R D R+++ + ++ Sbjct: 5 IERYWDHVRIARGLSRNTLLAYQRDVASFQHYLRDQQVSDVREMSPPLLAGFLDHLHQSG 64 Query: 128 -HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 +PS A + L ++R LF++ ++ +A NP +S+ R + + E++ + Sbjct: 65 LASPSRA-RALAAVRSLFRFLKQEGMIAANPTVSLRSASRARRLPKTLSPEEVTRLLELP 123 Query: 187 SEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDGF 241 + R E L +G+R S+ V ++ I T K V + Sbjct: 124 PRPLPEDHRDRAMVEVLYAAGVRVSELISLRVDQCNLDVGYIGITGKGEKQRVVPIGRPA 183 Query: 242 MKLLAM----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289 ++ + F++ + F +A+A +AG+ + S H + Sbjct: 184 IEAVQAYLLAARPALLKQRSSRFVFVSRRGTPLTRQAFWKLLRARAHRAGIARIPSPHML 243 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 R AT GA + A G + + YT Sbjct: 244 RHSFATHLLQRGADLRSVQAMLGHADIATTQIYTH 278 >gi|283782972|ref|YP_003373726.1| site-specific tyrosine recombinase XerC [Gardnerella vaginalis 409-05] gi|283441162|gb|ADB13628.1| site-specific tyrosine recombinase XerC [Gardnerella vaginalis 409-05] Length = 322 Score = 120 bits (302), Expect = 3e-25, Method: Composition-based stats. Identities = 55/285 (19%), Positives = 101/285 (35%), Gaps = 34/285 (11%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIRSGV--ESRK 127 LI +Y L ++ ++ S + G + ++TT +RS + ESR Sbjct: 21 LIDDYIDYVRANKGLGERTQKAYASDILQCLAWCNRHGFNNISELTTDDLRSWMADESRS 80 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF----- 182 H SS + + ++R F W EY++ NP + K K + + Sbjct: 81 HARSSLARKVVAVRGFFAWCQHVEYISGNPAEILMTSKIKNMLPSVLDEYQAESLMNNVD 140 Query: 183 ----------KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGT 231 K+ + G + E L +G+R + +Q + + +IK T K Sbjct: 141 SKANVSTSCPKNQKAVGLRNAAILELLYATGIRVGELTSLNIQDINFSSHTIKVTGKGNK 200 Query: 232 IITVELPDGFMKLLAMTPIGK-----------ETFFINNDKQKMNATQFSIWFKAKATKA 280 V K L+ E F+ ++++ +A A Sbjct: 201 QRVVPFGVPAYKALSAWISKDGREILLRNSVEEAVFLGTRGKRIDQRLVRQIVHDEAKSA 260 Query: 281 GV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 V + S H +R +AT + GA E+ G +++ + YT Sbjct: 261 HVPDISPHALRHSAATHMLNGGADLREVQELLGHSSLNTTQRYTH 305 >gi|28198608|ref|NP_778922.1| site-specific tyrosine recombinase XerC [Xylella fastidiosa Temecula1] gi|182681291|ref|YP_001829451.1| site-specific tyrosine recombinase XerC [Xylella fastidiosa M23] gi|73920479|sp|Q87DI2|XERC_XYLFT RecName: Full=Tyrosine recombinase xerC gi|254799363|sp|B2IA18|XERC_XYLF2 RecName: Full=Tyrosine recombinase xerC gi|28056692|gb|AAO28571.1| site-specific recombinase [Xylella fastidiosa Temecula1] gi|182631401|gb|ACB92177.1| tyrosine recombinase XerC [Xylella fastidiosa M23] gi|307579742|gb|ADN63711.1| site-specific tyrosine recombinase XerC [Xylella fastidiosa subsp. fastidiosa GB514] Length = 294 Score = 120 bits (302), Expect = 3e-25, Method: Composition-based stats. Identities = 42/257 (16%), Positives = 86/257 (33%), Gaps = 17/257 (6%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKI------TTKHIRSGVESRKHTPSSAIQFLT 138 ++ ++ ++ +I G ++ + S R + S + L+ Sbjct: 16 RGMSSHTLDAYRRDIGALIAWGGQQAVGEVVALDRAQLQAFVSAEHRRGLSAKSLQRRLS 75 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---WSEGSQPRLA 195 + R + W V++ ++A+NP + PK + R ++ F G + R Sbjct: 76 ACRGFYTWLVKRGHIAVNPAAGLRAPKALRKLPRILDADEAVSFVQIPTDTPLGLRDRAL 135 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-----ELPDGFMKLLAMTPI 250 E SGLR S+ C L + + G+ V + A + Sbjct: 136 LELFYSSGLRLSELCGLRWDGLDLDAGLVSVLGKGSRQRVVPVGSYALSALREWCASSGG 195 Query: 251 GK-ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHEL 307 G + F ++A + K A + G+ K H +R A+ ++ + Sbjct: 196 GAQQPVFPGRYGGPISARAVQVRIKQLAQRQGMAKHVHPHMLRHSFASHLLESSGDLRGV 255 Query: 308 MATYGWKTVDQAETYTK 324 G + + YT Sbjct: 256 QELLGHADITTTQIYTH 272 >gi|261345243|ref|ZP_05972887.1| tyrosine recombinase XerC [Providencia rustigianii DSM 4541] gi|282566940|gb|EFB72475.1| tyrosine recombinase XerC [Providencia rustigianii DSM 4541] Length = 311 Score = 120 bits (302), Expect = 3e-25, Method: Composition-based stats. Identities = 41/260 (15%), Positives = 82/260 (31%), Gaps = 20/260 (7%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQ------FLT 138 L+ + ++ + + + + I G + + +Q L+ Sbjct: 30 RRLSPVTITNYRRQLSAVCQILDELKVSQWQQLDIAIGRNVAAKSRRTGLQAASMALRLS 89 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQPRLA 195 ++R W V Q + NP ++ PK K + +++ Q + + R Sbjct: 90 ALRSFCDWMVEQGELPANPVKTIHAPKGKKRLPKNMDVDEVSQLLNMDSGDPLVVRDRTM 149 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMKLLAMT------ 248 E + +GLR S+ V+HL N K + + + L Sbjct: 150 LEVMYGAGLRLSELVGLDVKHLDLNSGEVWVMGKGSKERRIPMGKTAVNWLKRWLEMREL 209 Query: 249 --PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATA 304 P F ++++ F+ K GVN H +R AT ++ Sbjct: 210 YDPEDGAVFISTQSGKRISNRNVQKRFEQWGIKQGVNSHINPHKLRHSFATHILESSGNL 269 Query: 305 HELMATYGWKTVDQAETYTK 324 + G + + YT Sbjct: 270 RGVQELLGHANLSTTQIYTH 289 >gi|157364345|ref|YP_001471112.1| phage integrase family protein [Thermotoga lettingae TMO] gi|259710440|sp|A8F7B4|XERC_THELT RecName: Full=Tyrosine recombinase xerC gi|157314949|gb|ABV34048.1| phage integrase family protein [Thermotoga lettingae TMO] Length = 286 Score = 120 bits (302), Expect = 3e-25, Method: Composition-based stats. Identities = 41/274 (14%), Positives = 87/274 (31%), Gaps = 26/274 (9%) Query: 76 SEYRKSAHWGSLAVNSRISF----ESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131 S+Y H L+ ++ +++ + + +I D + + ++ HI ++ + Sbjct: 9 SDYL--MHVRRLSDHTVVAYVGDVKQFLCFLIEN--DIELKDVSRLHIEEYIKKLSKQKT 64 Query: 132 SAI-----QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + ++S+R F + NP + PK + ++Q+ F Sbjct: 65 KLNSTSLARKISSLRSFFNYLQLTSIKDENPVEGIRNPKIRRRIPDFLLPSEIQKLLEFS 124 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQH--LQNNIFSIKTQKTGTIITVELPDGFMK- 243 + + L L + GLR S+ C V+ I K V L + Sbjct: 125 MKNQRDYLMLSLLYFCGLRVSELCNLRVEDLSFSPAFVKITMGKGKKDRIVPLTSKLAEK 184 Query: 244 ----LLAMTPIGKETFFINNDK-QKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATI 296 + + ++ F + K + + G+ K H +R AT Sbjct: 185 LENYITSCGKSPEDYLFGSQIKIHPSTVFRI---VRKYTMMCGIKKRIHPHTLRHTFATH 241 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 G + G + Y D+ + Sbjct: 242 LLQKGVNIRVVQDLLGHSNLSTTSVYLHVVDQEK 275 >gi|229817402|ref|ZP_04447684.1| hypothetical protein BIFANG_02664 [Bifidobacterium angulatum DSM 20098] gi|229785191|gb|EEP21305.1| hypothetical protein BIFANG_02664 [Bifidobacterium angulatum DSM 20098] Length = 316 Score = 120 bits (302), Expect = 3e-25, Method: Composition-based stats. Identities = 45/295 (15%), Positives = 96/295 (32%), Gaps = 40/295 (13%) Query: 70 TLKWLISEYRKS-AHWGSLAVNSRISFES-YFDQI--IRKSGDFDYRKITTKHIRSGVES 125 T + I E+ L+ N+ S+ + D + + G +IT +R + Sbjct: 5 TFEKHIREFETYLGANRGLSGNTLKSYRTDVLDCLTYLESQGIEALDEITIDDLRGWMGQ 64 Query: 126 RK--HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 R H SS + + ++R F W + NP +++ PK +++ ++ Sbjct: 65 RSPSHARSSMARGVVAVRCFFSWGYEHGIIRTNPASALKTPKIADTLPTVLSEDQAERLM 124 Query: 184 SF----------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGT 231 + + E L +G+R ++ + + N + + Sbjct: 125 DREDETAAQSPDDPKALRDAAILELLYATGIRVAELVGLDIADVDFSNRTVKVTGKGNKQ 184 Query: 232 IITVELPDGFMKLLAMTPIGKET---------------------FFINNDKQKMNATQFS 270 + + A G+ + F+ ++++ Sbjct: 185 RVVPFGLPAAHAVEAWLKHGRPSVLESCSGMQRTDGDADDAMRALFLGMRGRRLDQRMAR 244 Query: 271 IWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 A +AGV + H +R +AT D GA E+ G ++ + YT Sbjct: 245 RVVHDAARRAGVPDVGPHALRHSAATHLLDGGADLREVQEMLGHSSLKTTQRYTH 299 >gi|169828358|ref|YP_001698516.1| site-specific tyrosine recombinase XerC [Lysinibacillus sphaericus C3-41] gi|168992846|gb|ACA40386.1| Tyrosine recombinase xerC [Lysinibacillus sphaericus C3-41] Length = 320 Score = 120 bits (302), Expect = 3e-25, Method: Composition-based stats. Identities = 54/285 (18%), Positives = 95/285 (33%), Gaps = 41/285 (14%) Query: 85 GSLAVNSRISFESYFDQIIR---------KSGDFDYRKITTKHIRSGVE----------- 124 + +R +E R + I T I E Sbjct: 21 KGKSQRTRKEYEYDLSLFFRFHTAVQEDLNIENLAAIDIATISIEEIREITLEDLYYFME 80 Query: 125 ----SRKHTPSSAIQFLTSMRVLFKWAV-RQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179 R ++ +S + + +++ FK+ ++ + NP +E PK + + Sbjct: 81 YCEVQRGNSAASRARKVATLKSFFKYLKGKRRLIEENPAEELESPKIGRKRPIYMNFREA 140 Query: 180 QQFKSFWSEG---SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236 QF + F L G+R ++ C+ + +Q ++ K TV Sbjct: 141 TQFIDGIPVNQASPRNYCMMMFFLNLGIRVTELCQLNITSIQGRHLTV-VGKGNKERTVY 199 Query: 237 LPDGFMKLLA------MTP---IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--- 284 L D M+ LA TP G E F++ + + K ++G+ K Sbjct: 200 LNDSCMQALADYENSGKTPYKGNGDEPLFVSQKGTRFTRQTVAKIVKRINQQSGLQKERL 259 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 + H +R SAT+ AGA L G +V + YT D Sbjct: 260 TPHKLRHTSATMMYKAGADIRSLQHILGHSSVATTQIYTHIEDEQ 304 >gi|269215605|ref|ZP_06159459.1| tyrosine recombinase XerD [Slackia exigua ATCC 700122] gi|269131092|gb|EEZ62167.1| tyrosine recombinase XerD [Slackia exigua ATCC 700122] Length = 307 Score = 120 bits (301), Expect = 3e-25, Method: Composition-based stats. Identities = 46/272 (16%), Positives = 91/272 (33%), Gaps = 23/272 (8%) Query: 88 AVNSRISFESYF---DQIIRKSG--DFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRV 142 +V++ + + + + G D + + + + L+S+R Sbjct: 31 SVHTVRGYRNDLLDFGRWAARHGIVPLDVTYRQIRSYLGEQNQAGYARRTINRRLSSLRG 90 Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-----SEGSQPRLAFE 197 F+W V+ +P V PK R DM + + E + + E Sbjct: 91 FFRWLNVTGRVSGDPVGVVSGPKLSKGLPRFIPASDMARILNVHHSSSEPEDMRNQAILE 150 Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-IITVELPDGFMKLLAMTPIGK---- 252 FL SG R S++ + + ++ G+ V L D + + Sbjct: 151 FLYASGARISEASGLLASDVDFSSRQVRVMGKGSKERIVPLHDLAVSSMRAYAEHARPQL 210 Query: 253 ------ETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATA 304 FF+++ + M+ FK AGV+ + H +R AT D GA Sbjct: 211 QGSGSCPRFFVSSRGRAMSTDALRKMFKRTLASAGVDGTYTPHDMRHTFATDLLDGGADL 270 Query: 305 HELMATYGWKTVDQAETYTKGADRIRLGIKNS 336 + G ++ + YT + + ++ Sbjct: 271 RSVQEMLGHASLSTTQIYTHVSSERLRSVHHA 302 >gi|261823389|ref|YP_003261495.1| site-specific tyrosine recombinase XerC [Pectobacterium wasabiae WPP163] gi|261607402|gb|ACX89888.1| tyrosine recombinase XerC [Pectobacterium wasabiae WPP163] Length = 311 Score = 120 bits (301), Expect = 3e-25, Method: Composition-based stats. Identities = 49/268 (18%), Positives = 93/268 (34%), Gaps = 23/268 (8%) Query: 77 EYRKSAHWGSLAVNSRISFESYFDQ---IIRKSGDFDYRKITTKHIRSGVESRK----HT 129 Y K L+ + S+ I+ +G D+RK+ +RS V K H+ Sbjct: 25 RYLK--AERQLSPLTLTSYSRQLSAVITILSAAGVVDWRKLDASGVRSVVSRSKRDGLHS 82 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW--- 186 S A++ L+++R W V + + NP V P+ + ++M + Sbjct: 83 ASLALR-LSALRSFLDWMVSRGVLTANPAKGVSTPRAGRPLPKNMDVDEMNRLLEIDLDD 141 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVEL-------P 238 + R E + +GLR ++ QH+ K + + Sbjct: 142 PLAVRDRTMLEVMYGAGLRLAELVGMDYQHIDLASGEVWVVGKGSKERKLPIGKTAVTWL 201 Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATI 296 + ++ L + FI+N ++++ F K GVN H +R AT Sbjct: 202 ERWLALRELFGPQDNAVFISNQGRRISMRNVQKRFAEWGVKQGVNSHVHPHKLRHSFATH 261 Query: 297 SADAGATAHELMATYGWKTVDQAETYTK 324 ++ + G + + YT Sbjct: 262 MLESSGDLRAVQELLGHANLTTTQIYTH 289 >gi|78356957|ref|YP_388406.1| integrase/recombinase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78219362|gb|ABB38711.1| integrase/recombinase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 304 Score = 120 bits (301), Expect = 3e-25, Method: Composition-based stats. Identities = 43/270 (15%), Positives = 86/270 (31%), Gaps = 28/270 (10%) Query: 86 SLAVNSRISFESYFDQIIRKSGDFD---------YRKITTKHIRSGVESRKHTPSSAI-- 134 + + ++ + R +G+ + V + P SA Sbjct: 25 GRSPATIAAYRRDLALVARVAGELAPGIVCREVTVGLLDEVFSAGAVTESERGPRSAASL 84 Query: 135 -QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS--- 190 + ++R F WA V NP S+ + + T + ++ + Sbjct: 85 HRMKAAVRAFFAWAAETGVVGDNPARSIRMHRLPRKLPVFLTTAEKKRLLKELKGRTDFS 144 Query: 191 --QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE---------LPD 239 + R E LL +G+R + + + + ++ + G + V+ L Sbjct: 145 TLRDRAMIEVLLGTGIRLGELTALDMDDIDLDAKHLRVRAKGNVPQVKFIKTDLRTLLRR 204 Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS 297 + E F++N ++ Q + KAG+ K + HG+R AT Sbjct: 205 YLAERRRHGRPEMEALFLSNRDGRLCQRQIANRLAHWLRKAGIEKELTPHGLRHTFATHL 264 Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGAD 327 A + G + V + YT D Sbjct: 265 YGATNDLLVVQRALGHRDVSTTQIYTHLVD 294 >gi|325127525|gb|EGC50451.1| tyrosine recombinase XerC [Neisseria meningitidis N1568] gi|325133512|gb|EGC56175.1| tyrosine recombinase XerC [Neisseria meningitidis M13399] gi|325206779|gb|ADZ02232.1| tyrosine recombinase XerC [Neisseria meningitidis M04-240196] Length = 305 Score = 120 bits (301), Expect = 3e-25, Method: Composition-based stats. Identities = 36/278 (12%), Positives = 84/278 (30%), Gaps = 24/278 (8%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD-------YRKITTKHIRSGV 123 Y ++ + ++ ++ +++ + ++ + + + Sbjct: 6 FAAHFDAYLENIVREGKSEHTVAAYRRDLEELFALLAQMPSEAEGGVPQDLSRRDFTAAL 65 Query: 124 ES---RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 R + + L+S R W V + + +P ++ PK+ + +E + Sbjct: 66 RRLSQRGLNARTLARKLSSWRQYCVWLVERGLLHTDPAADIKPPKQPERVPKALPQEWLN 125 Query: 181 QFKSF-----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIIT 234 + + FE + SGLR S+ + + + G Sbjct: 126 RMLDLPVDGGDPLAVRDHALFELMYGSGLRVSEIHGLNADDVYLDEAWVHVTGKGRKQRQ 185 Query: 235 VELP----DGFMKL--LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK--AGVNKSA 286 V L + L T + F + +++ Q A + G + S Sbjct: 186 VPLTGKSVEALKNYLPLRQTASDGKALFTGRNGTRLSQRQIQKRLAQWAAQNGDGRHVSP 245 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R A A + G ++ + YTK Sbjct: 246 HMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTK 283 >gi|313897322|ref|ZP_07830865.1| phage integrase, N-terminal SAM domain protein [Clostridium sp. HGF2] gi|312957692|gb|EFR39317.1| phage integrase, N-terminal SAM domain protein [Clostridium sp. HGF2] Length = 307 Score = 120 bits (301), Expect = 3e-25, Method: Composition-based stats. Identities = 45/279 (16%), Positives = 94/279 (33%), Gaps = 28/279 (10%) Query: 78 YRKSAHWGSLA--VNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH------- 128 Y ++ SLA + + Y + + G + I + I+S + + Sbjct: 13 YIQAVDQKSLATIHSYTQDLQEYLSWLQMQ-GKTEMEDILPRDIQSFLSDMEQGDIQEDG 71 Query: 129 ---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 SS L+S+ + ++ ++P + + K++ + + D++ Sbjct: 72 LCYKRSSVNHMLSSIHMFHRFISMNHPSILDPSIHLRGGKKEQKLPLYFNPHDIELLLDS 131 Query: 186 W---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGF 241 + ++G + E L GLR S+ C + + ++ K V + + Sbjct: 132 FGQDAQGLYQKAILELLYGCGLRVSEVCELRINQVHLEQGYLRVIGKGDKERMVPMHERC 191 Query: 242 MKLLAM---------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVR 290 M++L F+N+ + K + G++ SAH R Sbjct: 192 MRVLRTYLTQIRPTWEKRKSTRVFLNSRGNVLTRQYVHTLIKQRLQALGLDERLSAHSFR 251 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 AT D GA + G + + YT +R Sbjct: 252 HSFATHLLDGGADLRVVQELLGHSDIATTQIYTHVQNRR 290 >gi|238853068|ref|ZP_04643460.1| tyrosine recombinase XerC [Lactobacillus gasseri 202-4] gi|238834316|gb|EEQ26561.1| tyrosine recombinase XerC [Lactobacillus gasseri 202-4] Length = 307 Score = 120 bits (301), Expect = 3e-25, Method: Composition-based stats. Identities = 43/279 (15%), Positives = 103/279 (36%), Gaps = 26/279 (9%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQ----IIRKSGDFDYRKITTKHIRSGVESR 126 LI +++ ++ + + N+ S+ + D+ G + K+ ++ + ++S Sbjct: 6 DKLIEQFQDYLNYERNYSKNTVSSYLNDLDEAKQFFKENGGFGSWDKVKSRDVEIFLQSL 65 Query: 127 KH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 + ++ + ++S+R +++ V++E + +P ++ + + + + +++M+Q Sbjct: 66 AAQNRSRTTQARKMSSLRSFYRFLVKREVLENDPMQTISLRLGEKKLPQFFYEKEMRQVF 125 Query: 184 S----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIITVEL- 237 + R FE +G+R S+ + + + + K V Sbjct: 126 DSLVGHDKLVVRNRAMFELFYATGMRLSEMASLKLDQIDFGLKIILVHGKGNKDRYVPFG 185 Query: 238 ----------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS-- 285 D L F+NN QK+ + KAGV Sbjct: 186 KDAFDALREYRDDVRPALLGQNEDLGYVFLNNRGQKLTGRGIEYIMQQVFIKAGVGGKVH 245 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R AT + GA + G +++ + YT Sbjct: 246 PHMLRHSFATEMLNNGADLRSVQELLGHESLSTTQIYTH 284 >gi|182417143|ref|ZP_02948516.1| integrase/recombinase, phage integrase family [Clostridium butyricum 5521] gi|237667184|ref|ZP_04527168.1| phage integrase [Clostridium butyricum E4 str. BoNT E BL5262] gi|182378985|gb|EDT76491.1| integrase/recombinase, phage integrase family [Clostridium butyricum 5521] gi|237655532|gb|EEP53088.1| phage integrase [Clostridium butyricum E4 str. BoNT E BL5262] Length = 332 Score = 120 bits (301), Expect = 3e-25, Method: Composition-based stats. Identities = 42/261 (16%), Positives = 93/261 (35%), Gaps = 13/261 (4%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPSS 132 I Y + + + + ++ + IT IR + PS+ Sbjct: 58 ILLYLQVKKLENYSKATLSNYMYTLRNFSTFI-NKPVSTITKNDIRYFMAINYTNLKPST 116 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192 L S++ F+W ++E + NP + + + T E++++ + + + Sbjct: 117 VNNKLASLKAFFEWMEQEEIIPKNPARHLSGTRLPKRLRKSLTIEELEKIRLVCKD-VRE 175 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG----FMKLLAM 247 R+ EFL +G R S+ +A + L + S++ K V D + Sbjct: 176 RVLIEFLFATGCRISEVVKANISDLDLSNNSLRVIGKGDKQRIVFFSDKTKLHLKNYIDT 235 Query: 248 TPIGKETFFINN--DKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGAT 303 ++ FI++ +++ + ++ + K H +R AT+ +GA Sbjct: 236 RKDNEDALFISSKFPYNRISKRGLELIVSKIGERSNIGKPVFPHLLRHTMATLGLQSGAD 295 Query: 304 AHELMATYGWKTVDQAETYTK 324 + G T + Y + Sbjct: 296 ITTIQHLLGHTTPSTTQIYAE 316 >gi|183602465|ref|ZP_02963831.1| probable integrase/recombinase [Bifidobacterium animalis subsp. lactis HN019] gi|219683221|ref|YP_002469604.1| tyrosine recombinase XerD [Bifidobacterium animalis subsp. lactis AD011] gi|241191181|ref|YP_002968575.1| Integrase [Bifidobacterium animalis subsp. lactis Bl-04] gi|241196587|ref|YP_002970142.1| Integrase [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183218384|gb|EDT89029.1| probable integrase/recombinase [Bifidobacterium animalis subsp. lactis HN019] gi|219620871|gb|ACL29028.1| tyrosine recombinase XerD [Bifidobacterium animalis subsp. lactis AD011] gi|240249573|gb|ACS46513.1| Integrase [Bifidobacterium animalis subsp. lactis Bl-04] gi|240251141|gb|ACS48080.1| Integrase [Bifidobacterium animalis subsp. lactis DSM 10140] gi|295794174|gb|ADG33709.1| Integrase [Bifidobacterium animalis subsp. lactis V9] Length = 307 Score = 120 bits (301), Expect = 3e-25, Method: Composition-based stats. Identities = 47/273 (17%), Positives = 96/273 (35%), Gaps = 30/273 (10%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRK---ITTKHIRSGVESRKHTPSSAI---QFLT 138 L+ + ++E+ DQ +R G+ K IT+ + V ++ + +SA+ + L Sbjct: 20 RGLSAATVQAYENDIDQYVRWLGEQGIAKAASITSNDVEDFVAAQSKSGTSAVSLARRLA 79 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK--SFWSEGS-----Q 191 S+ + ++ + VA + SV PK T +++Q+ + + S + Sbjct: 80 SIHMFHRFMQSERVVADDVSQSVRPPKSAETLPEVLTVDEVQRLLDAARHDDASEAVSMR 139 Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT---------------IITVE 236 E + +G R S++ + + ++ G VE Sbjct: 140 DSALLELMYATGCRVSEAVGLDFTDVDMDAQVVRLTGKGAKQRLVPFGTYAANALRAYVE 199 Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSA 294 ++ A + F+N +++ K A V+K H +R A Sbjct: 200 HARPELENKAKGERERSAIFLNKRGKRLTRQSVWEIIKHAGALAHVSKPLHPHTLRHSFA 259 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGAD 327 T GA + G +V + YT + Sbjct: 260 THMLQGGADVRTVQELLGHASVKTTQMYTHVSQ 292 >gi|83595882|gb|ABC25244.1| tyrosine recombinase xerC [uncultured marine bacterium Ant4D3] Length = 312 Score = 120 bits (301), Expect = 3e-25, Method: Composition-based stats. Identities = 42/275 (15%), Positives = 87/275 (31%), Gaps = 21/275 (7%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR 126 L ++ +Y + + ++ ++ ++I G + IR + + Sbjct: 8 LNHVVQQYLDYLAYNKRYSPHTINAYARDMQRLIETLEDQGHGMWADAQADTIRDAMVTA 67 Query: 127 KHT---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 + T P S + L+S R F + ++Q V +NP + PK + + + Q Sbjct: 68 RKTHLAPKSIQRILSSWRSFFTYLLQQNLVKLNPVDGIRAPKSPRKLPNSLDPDQISQVL 127 Query: 184 SFW-----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVE- 236 + + + E GLR ++ V + + I T K + Sbjct: 128 NATITSDDPMAMRDKAMLELTYSCGLRLAELASLNVFDIDLTDASLIVTGKGNKTRQLPI 187 Query: 237 -------LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGV 289 L + + FIN+ Q+M + A G + H + Sbjct: 188 GRQAITALKSWLQQRGQLKCHDANALFINHRGQRMGVRGIQMRMANMAATHGQHIHPHML 247 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 R A+ + + G + + YT Sbjct: 248 RHSFASHLLQSSGDLRAVQELLGHSNISTTQVYTH 282 >gi|153805941|ref|ZP_01958609.1| hypothetical protein BACCAC_00181 [Bacteroides caccae ATCC 43185] gi|149130618|gb|EDM21824.1| hypothetical protein BACCAC_00181 [Bacteroides caccae ATCC 43185] Length = 293 Score = 120 bits (301), Expect = 3e-25, Method: Composition-based stats. Identities = 50/276 (18%), Positives = 101/276 (36%), Gaps = 24/276 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIR----KSGDFDYRKITTKHIRSGV---ES 125 LI + + + + + +++ Q+ + G F+ ++ + IR + Sbjct: 2 LIKSFLDYLRYERNYSEKTVLAYSEDIKQLQEFAQEEYGRFNPLEVEAELIREWIVSLMD 61 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 R +T +S + L+S+R +K+ +RQ V +P + PK K + +M + Sbjct: 62 RGYTSTSVNRKLSSLRSFYKYLLRQGEVTKDPLCKITGPKNKKPLPVFLKESEMNKLLDE 121 Query: 186 WSEGS-----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPD 239 G + RL E +G+R S+ + + + +K T K + D Sbjct: 122 TDFGEGFKGYRDRLIIEVFYATGIRLSELIGLDDKDVDFSASLLKVTGKRNKQRLIPFGD 181 Query: 240 GFMKLL--------AMTPIGKETFFINNDKQKMNATQFSIWFKA--KATKAGVNKSAHGV 289 +L+ M P E FF+ + +++ K +S H + Sbjct: 182 ELRELMLGYINIRNEMIPERSEAFFVRENGERLYKNLVYNLVKRNLSKVVTLKKRSPHVL 241 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 R AT + A + G +++ E YT Sbjct: 242 RHTFATTMLNNDAELGAVKELLGHESIATTEIYTHA 277 >gi|42519036|ref|NP_964966.1| integrase/recombinase CodV [Lactobacillus johnsonii NCC 533] gi|41583323|gb|AAS08932.1| probable integrase/recombinase CodV [Lactobacillus johnsonii NCC 533] Length = 307 Score = 120 bits (301), Expect = 3e-25, Method: Composition-based stats. Identities = 40/279 (14%), Positives = 105/279 (37%), Gaps = 26/279 (9%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQ----IIRKSGDFDYRKITTKHIRSGVESR 126 LI +++ ++ + + N+ S+ + ++ G + ++ ++ + +++ Sbjct: 6 DKLIKQFQDYLNYERNYSKNTVNSYLNDLNEAKEFFKENGGFSGWDQVKSRDVEIFLQNL 65 Query: 127 K---HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 + ++ + ++S+R +++ V++E + +P ++ + + + + +++M+Q Sbjct: 66 ATQNRSRTTQARKMSSLRSFYRFLVKREVLDNDPMQTISLRLGEKKLPQFFYEKEMRQVF 125 Query: 184 SFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELP 238 + + R FE +G+R S+ + + + + K V Sbjct: 126 DSLAGHEKLVVRNRAMFELFYATGMRLSEMASLKLDQIDFDLKIILVHGKGNKDRYVPFG 185 Query: 239 DGFMKLLA-----MTPI------GKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS-- 285 L P + F+NN QK+ + KAGV Sbjct: 186 KDAANALKEYCDEGRPALLGKNEDRGYVFLNNRGQKLTGRGIEYIMQQVFIKAGVGGKVH 245 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R AT + GA + G +++ + YT Sbjct: 246 PHMLRHSFATEMLNNGADLRSVQELLGHESLSTTQIYTH 284 >gi|289177291|gb|ADC84537.1| Integrase/recombinase (XerD/RipX family) [Bifidobacterium animalis subsp. lactis BB-12] Length = 309 Score = 120 bits (301), Expect = 3e-25, Method: Composition-based stats. Identities = 47/273 (17%), Positives = 96/273 (35%), Gaps = 30/273 (10%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRK---ITTKHIRSGVESRKHTPSSAI---QFLT 138 L+ + ++E+ DQ +R G+ K IT+ + V ++ + +SA+ + L Sbjct: 22 RGLSAATVQAYENDIDQYVRWLGEQGIAKAASITSNDVEDFVAAQSKSGTSAVSLARRLA 81 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK--SFWSEGS-----Q 191 S+ + ++ + VA + SV PK T +++Q+ + + S + Sbjct: 82 SIHMFHRFMQSERVVADDVSQSVRPPKSAETLPEVLTVDEVQRLLDAARHDDASEAVSMR 141 Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT---------------IITVE 236 E + +G R S++ + + ++ G VE Sbjct: 142 DSALLELMYATGCRVSEAVGLDFTDVDMDAQVVRLTGKGAKQRLVPFGTYAANALRAYVE 201 Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSA 294 ++ A + F+N +++ K A V+K H +R A Sbjct: 202 HARPELENKAKGERERSAIFLNKRGKRLTRQSVWEIIKHAGALAHVSKPLHPHTLRHSFA 261 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGAD 327 T GA + G +V + YT + Sbjct: 262 THMLQGGADVRTVQELLGHASVKTTQMYTHVSQ 294 >gi|258539622|ref|YP_003174121.1| tyrosine recombinase xerD [Lactobacillus rhamnosus Lc 705] gi|257151298|emb|CAR90270.1| Tyrosine recombinase xerD [Lactobacillus rhamnosus Lc 705] Length = 299 Score = 120 bits (301), Expect = 3e-25, Method: Composition-based stats. Identities = 40/235 (17%), Positives = 80/235 (34%), Gaps = 23/235 (9%) Query: 111 YRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170 + + + + + +S + ++S+R +++ VR + V NP VE K+ Sbjct: 49 VDDLDVQTYLTDLNKQALARTSIARKISSLRSFYRYLVRIDVVKRNPFELVELKKQHHHL 108 Query: 171 IRPWTKEDMQQFKS----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIK 225 + + + ++Q+ + R E L +G+R S+ + + N + Sbjct: 109 PQFFYEAEIQELFKTVEGETPLDQRNRALLEVLYGTGIRVSECANLTLNQVDFNTGLLLI 168 Query: 226 TQKTGTIITVE------------LPDGFMKLLAMTPIGKETFFINNDKQKMNATQ----F 269 K V L DG L+ F+N + + A Sbjct: 169 HGKGNKDRYVPFGRYAQRALQTYLKDGRQTLMNKHDAQHRFVFVNQYGRPITARGIEYIL 228 Query: 270 SIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 K + A ++ H +R AT D GA + G ++ + YT Sbjct: 229 DQLIKQTSLTANIH--PHMLRHSFATHMLDHGADLRTVQELLGHASLSTTQIYTH 281 >gi|189182948|ref|YP_001936733.1| putative integrase [Orientia tsutsugamushi str. Ikeda] gi|189179719|dbj|BAG39499.1| putative integrase [Orientia tsutsugamushi str. Ikeda] Length = 271 Score = 120 bits (301), Expect = 3e-25, Method: Composition-based stats. Identities = 40/200 (20%), Positives = 79/200 (39%), Gaps = 8/200 (4%) Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 ++A L ++R +F A++ + NP L +E+ K + R + + M + + Sbjct: 42 ATANLLLATLRTMFNKAIKWGLIENNPTLGIEQHKLQARERR-LSYDKMGRLLHVLCGET 100 Query: 191 QP--RLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLA 246 P R LY+G R S+ ++ I+ I K G + L D M++L Sbjct: 101 TPLIRDFALLALYTGARKSNVLEMEWDNIDFERKIWHIPKTKNGKAQNIPLTDEAMEILQ 160 Query: 247 MTPIGKET--FFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGAT 303 E+ + + + + + + KAG+ N H +R+ A+ D GA+ Sbjct: 161 ARKFTSESKWVLPSATSESGHLERPNNSWHRVCKKAGIKNLRIHDLRRTFASCMGDVGAS 220 Query: 304 AHELMATYGWKTVDQAETYT 323 + + + +YT Sbjct: 221 QRTISIALNHISPESTISYT 240 >gi|78484754|ref|YP_390679.1| Phage integrase [Thiomicrospira crunogena XCL-2] gi|78363040|gb|ABB41005.1| tyrosine recombinase XerC subunit [Thiomicrospira crunogena XCL-2] Length = 317 Score = 120 bits (301), Expect = 3e-25, Method: Composition-based stats. Identities = 42/299 (14%), Positives = 95/299 (31%), Gaps = 21/299 (7%) Query: 44 IPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII 103 + Y + + + ++ L L+ Y L + S +++ + Sbjct: 1 MSDYQRFIKQLKLENKSEHTISNYQRDLMGLLVFYLGDYLEQPLDEKALKSDQAW--AFL 58 Query: 104 RKSGD-FDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE 162 + D + + + + S + L+++R + + + Q NP ++ Sbjct: 59 DQFDDWQAIKLPVLQAFIAFRMQQGIAARSIARQLSAIRAFYAFLIEQGRANHNPAKGLK 118 Query: 163 RPKRKTEGIRPW----TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRA------ 212 PK+ + T++ ++Q W + + + FE L GLR S+ Sbjct: 119 APKQPKALPKSLDVDLTRQLLEQPLKTWQD-VRDQAIFEILYSGGLRVSELVELDLSPGL 177 Query: 213 -----GVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNAT 267 G + + G L G++ F+N +++ Sbjct: 178 DGLASGWVRVLGKGQKERDAPVGQPAQKALHRWLEIRSDYAQPGEQAVFVNRFGKRLGVR 237 Query: 268 QFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 + +AG+ S H +R AT ++ + G + + YTK Sbjct: 238 SIQTQLDKRTLQAGLPTKMSPHRLRHACATHVLESSGDLRAVQEMLGHANLSTTQIYTK 296 >gi|225174941|ref|ZP_03728938.1| integrase family protein [Dethiobacter alkaliphilus AHT 1] gi|225169581|gb|EEG78378.1| integrase family protein [Dethiobacter alkaliphilus AHT 1] Length = 286 Score = 120 bits (301), Expect = 3e-25, Method: Composition-based stats. Identities = 47/278 (16%), Positives = 97/278 (34%), Gaps = 20/278 (7%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQI-----IRKSGDFDYRKITTKHIRSGVESRKHT 129 I ++++ + + + + + +G I + I + S K Sbjct: 7 IEQFQQYMNDIERSPVTIALYLRDLRYFGSYMEKKHNGPVYLEDIKSADIEGFLRSLKER 66 Query: 130 ---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 P+S ++L ++R +K+A ++E V + L+V+ K T+ +++++ + + Sbjct: 67 NIAPNSRSRYLYTLRSFYKFAYKKELVERDISLAVDLVKLPTKERHYLSQQEVAEL-ADT 125 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQKTGTIITVELPDGFMKL 244 RL FL +GLR S+ + + + I + + K V + + + L Sbjct: 126 ITNDLVRLIVIFLANTGLRISECIKLTMDDVDLDKGIIHVISGKGNKDRNVPINNKLLPL 185 Query: 245 LA------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATI 296 L FF ++ T + + G K S H +R AT Sbjct: 186 LIDYKDNWRDAYNSNFFFATKKTGTISNTYVNNTLRQAVQSLGWKKNVSCHILRHSFATS 245 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIK 334 E+ G + Y AD +L Sbjct: 246 LVKQKVGLVEIQKLLGHSDLKITSVYMH-ADLEQLQDA 282 >gi|332184625|gb|AEE26879.1| site-specific recombinase [Francisella cf. novicida 3523] Length = 292 Score = 120 bits (301), Expect = 3e-25, Method: Composition-based stats. Identities = 38/263 (14%), Positives = 93/263 (35%), Gaps = 16/263 (6%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI---RSGVESRKHTPSSAIQFLTSMR 141 + + + +++ Q+ + D + +T I + ++ ++P + + L+S+R Sbjct: 18 KNYSQETINNYQKDLLQLNQALNDKNITSLTYSDILIWIKKLHAQGNSPKTLQRKLSSVR 77 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG---SQPRLAFEF 198 F + + E V NP ++ PK + +++ ++ F+ Sbjct: 78 SFFNFLINSEIVTQNPASGIKAPKSSKRLPKVVNTDELAYLLDVNPSNDIEARDIACFDL 137 Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL--------PDGFMKLLAMTPI 250 L G+R S+ ++ + + SI+ G + D ++K+ Sbjct: 138 LYSCGIRLSELSSIELKDISISQKSIRVTGKGNKQRITYFGPKTLSNLDRWLKIRDTLKP 197 Query: 251 GKETFFINNDKQKMNATQFSIWFKAKATK-AGVNKSAHGVRKFSATISADAGATAHELMA 309 FI+ D + + + + K A + H +R A+ D+ + Sbjct: 198 NCNYLFISRDGKHLTNRSIQKRLEIFSQKYASRHIHPHMLRHSFASHMLDSSKDLLAVKD 257 Query: 310 TYGWKTVDQAETYTKGADRIRLG 332 G + + YT + +L Sbjct: 258 LLGHADISSTQIYTH-LNFQQLA 279 >gi|311064002|ref|YP_003970727.1| integrase/recombinase [Bifidobacterium bifidum PRL2010] gi|310866321|gb|ADP35690.1| Integrase/recombinase (XerD/RipX family) [Bifidobacterium bifidum PRL2010] Length = 322 Score = 120 bits (301), Expect = 3e-25, Method: Composition-based stats. Identities = 44/285 (15%), Positives = 91/285 (31%), Gaps = 45/285 (15%) Query: 85 GSLAVNSRISF----ESYFDQIIRKSGDFDYRKITTKHIR---SGVESRKHTPSSAIQFL 137 LA + ++ Y + G D I I + ++S + S + L Sbjct: 20 RGLARATVRAYESDLRRYLSWLAHTRGITDPDAIGKADIEEYVAQLDSDGDSARSKARRL 79 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG-------- 189 S+ ++A+ Q V+ + +V+ PK T +++ + + Sbjct: 80 ASIHEFHRFALAQHAVSDDVSATVKAPKSAQMLPDVLTIDEVSRLLDAIPDPHGTDAARG 139 Query: 190 ------------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITV 235 + R EF+ +G R S++ + + + + T K V Sbjct: 140 RAGIGALPDAVLLRDRALLEFMYATGCRVSEAVGMNLDDIDIDDAHVARLTGKGSKQRLV 199 Query: 236 ELPDGFMKLLAM--------------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281 L + + L + F+N ++++ K +AG Sbjct: 200 PLGEYACRALRRYLAEGRGTLEGRAKGTPERRAVFLNKRGRRLSRQSVWEVIKLAGERAG 259 Query: 282 VNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 +++ H +R AT GA + G +V + YT Sbjct: 260 IDRPLHPHTLRHSFATHLIQGGADVRTVQELLGHASVTTTQIYTH 304 >gi|134101746|ref|YP_001107407.1| integrase/recombinase [Saccharopolyspora erythraea NRRL 2338] gi|291003082|ref|ZP_06561055.1| integrase/recombinase [Saccharopolyspora erythraea NRRL 2338] gi|133914369|emb|CAM04482.1| integrase/recombinase [Saccharopolyspora erythraea NRRL 2338] Length = 313 Score = 120 bits (301), Expect = 3e-25, Method: Composition-based stats. Identities = 48/261 (18%), Positives = 87/261 (33%), Gaps = 27/261 (10%) Query: 89 VNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT--------PSSAIQFLTSM 140 + Y D ++ SG ++ + H+ + + + SSA + L + Sbjct: 34 DSYARDLRRYADHLLE-SGVRALGEVRSTHLSAFLAELREGGPERPALAQSSAARALIAA 92 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRLAF 196 R L ++A V ++ + P + D+ + G + R Sbjct: 93 RGLHRFAHADGIVEVDVAREISPPSPPKRLPKALPVSDVLRLLDNTGGEDVRGLRDRALL 152 Query: 197 EFLLYSGLRCSDSCRAGVQHLQN-NIFSIKTQKTGTIITVEL-PDGFMKL---------- 244 E L SG R S++ V + + K G V + L Sbjct: 153 ELLYSSGARISEAVGLDVDDVDEAERTILLDGKGGRQRLVPVGRPALAALGAYMVRARPV 212 Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGA 302 LA G F+N+ +++ K+ A +AG+ S H +R AT + GA Sbjct: 213 LAGRGRGSSAVFLNSRGTRLSRQSAWNALKSAAERAGIGSGVSPHVLRHSFATHLLEGGA 272 Query: 303 TAHELMATYGWKTVDQAETYT 323 + G +V + YT Sbjct: 273 DVRVVQELLGHASVTTTQVYT 293 >gi|154249762|ref|YP_001410587.1| integrase family protein [Fervidobacterium nodosum Rt17-B1] gi|154153698|gb|ABS60930.1| integrase family protein [Fervidobacterium nodosum Rt17-B1] Length = 290 Score = 120 bits (301), Expect = 3e-25, Method: Composition-based stats. Identities = 43/288 (14%), Positives = 98/288 (34%), Gaps = 24/288 (8%) Query: 71 LKWLISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH- 128 ++ L+ Y H + N+ ++ + + I + V++ Sbjct: 6 IEALLRTYEDYLVHVRRSSENTVKAYIKDIRRFFEYI-QKPPKDIVRSDVEKFVKALSKG 64 Query: 129 -------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 T ++ ++++S++ +F + V NP V P+ + + T ++++ Sbjct: 65 EITGGEVTETTISRYISSLKTIFDYLQLIGVVNENPTERVRHPRLRKKIPSFLTMKEVKA 124 Query: 182 FKSFWSEG--SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVEL 237 + + E + + L + GLR S+ C V+ + + K V + Sbjct: 125 MINTFDEEKELKYKTIISVLYFCGLRVSELCNLRVEDVSFYPPYIKVVMGKGNKDRLVPI 184 Query: 238 PDG----FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRK 291 D K + +FI + + ++ K A +AG+NK H +R Sbjct: 185 SDSIIPLLEKYVERYKPK--VYFIESRGKSIHPATVFRIVKRAAQRAGINKKIHPHTLRH 242 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339 AT + G + Y AD+ + +++ Sbjct: 243 SFATHLIMNNVNVKIVQELLGHANLSTTSIYLHVADKEK--FDAVKKL 288 >gi|126173817|ref|YP_001049966.1| phage integrase family protein [Shewanella baltica OS155] gi|125997022|gb|ABN61097.1| phage integrase family protein [Shewanella baltica OS155] Length = 451 Score = 120 bits (301), Expect = 3e-25, Method: Composition-based stats. Identities = 52/289 (17%), Positives = 109/289 (37%), Gaps = 16/289 (5%) Query: 48 MSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKS 106 + A + SPR + + K + +++ S ++ ++ Sbjct: 77 LQAWREEHAQPSMSASPR-----FDVFVEQTWKPMIFDHWKPSTKRSVLPALNRRLLAHF 131 Query: 107 GDFDYRKITTKHIRSGVESRKHTP-SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK 165 G + I K +++ + T +A + L +++ +FK A+RQ + NPC+ + + K Sbjct: 132 GRYPLHMINHKMVQAWFDEISKTRKGAANRNLDTLQSVFKLALRQGHCLTNPCIGIRQNK 191 Query: 166 RKTEGIRPWTKEDMQQFKSFWSE-----GSQPRLA--FEFLLYSGLRCSDSCRAGVQHLQ 218 R+ R + +MQ+ E GS + A LL +G R S+ ++++ Sbjct: 192 RRV-LNRFLSVAEMQRLSVALDECEEVGGSIAQCADILRLLLLTGCRLSEITFLKGEYVR 250 Query: 219 NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKAT 278 N + KTG + + + + +L+ T + S+W + + Sbjct: 251 GNELHLPDSKTGAKV-LYIGQAAVDILSRYHCKANTELFPMKLGASTSLVQSLWLRLRKQ 309 Query: 279 KAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 + H +R A+ + G + + + G K V YT D Sbjct: 310 IGIEDVRLHDLRHTFASYAVMDGCSIPMVASLLGHKKVTMTLRYTHVGD 358 >gi|237809853|ref|YP_002894293.1| tyrosine recombinase XerC [Tolumonas auensis DSM 9187] gi|237502114|gb|ACQ94707.1| tyrosine recombinase XerC [Tolumonas auensis DSM 9187] Length = 309 Score = 120 bits (301), Expect = 3e-25, Method: Composition-based stats. Identities = 39/278 (14%), Positives = 93/278 (33%), Gaps = 23/278 (8%) Query: 70 TLKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRK-------ITTKHIRS 121 +L ++ Y + L+ ++ +++ + +I + + + + + Sbjct: 4 SLSSVLHTYLEYLRVERQLSAHTLSNYQRHLQALIEWLQEKQIQDWGELNNPLVRQWAHT 63 Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 + + +P + ++++R W V + +A NP V PK + + + Q Sbjct: 64 LRKHKDTSPRTISTKMSALRSFADWLVIRGILAANPARGVALPKLGRPLPKNLDVDQVHQ 123 Query: 182 FKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-- 235 + E + R E +G+R S+ + L ++ G + Sbjct: 124 LLNITDESDPLVVRDRAIMELFYSTGMRLSELVALDLNDLDMTSRQVRVIGKGNKERILP 183 Query: 236 -------ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSA 286 L A G+ F+++ K+++ A I + K +N Sbjct: 184 VGRLALEWLEKWLRTRTAFLLEGETALFLSSRKRRITARMVEIRIEQWGQKQTLNSHVHP 243 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R AT ++ + G + + YT Sbjct: 244 HKLRHSFATHMLESSGDLRAVQELLGHANLATTQIYTH 281 >gi|226314997|ref|YP_002774893.1| hypothetical protein BBR47_54120 [Brevibacillus brevis NBRC 100599] gi|226097947|dbj|BAH46389.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599] Length = 290 Score = 120 bits (301), Expect = 3e-25, Method: Composition-based stats. Identities = 43/280 (15%), Positives = 91/280 (32%), Gaps = 24/280 (8%) Query: 77 EYRKSAHWGSLAVNSRISFESYFDQI---------IRKSGDFDYRKITTKHIRSGVESRK 127 +Y S + + ++ D + R Sbjct: 15 QYLSS---IGRSEQTITGYKKDLSYFTRFLERKYNCEPYIDEVLVTDIEDFLLYLKTERA 71 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + P+S + L + R F +A ++E+V+ N LSVE+ K + + + ++ + S Sbjct: 72 YAPASRQRNLHTFRSFFAYAQKKEWVSRNIALSVEKIKVQQKERTYLEEAEVDELVSEID 131 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDGFMKLL 245 RL L +G+R S+ V + + + K + + + +L Sbjct: 132 HPL-IRLVVMVLYMTGMRISECLNLKVDEVKWDQQVIHVVAGKGNKDRFIPISPRLLPML 190 Query: 246 ------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS 297 FF K++ + + G +K +AH +R A+ Sbjct: 191 KEYVLHHRPDSDSNRFFCTKKTGKLSPVYVNREITEAVKRLGWSKKVTAHILRHSFASQL 250 Query: 298 ADAGATAHELMATYGWKTVDQAETYTKG-ADRIRLGIKNS 336 ++ G +++ YT D++R I + Sbjct: 251 VKKDVNLVQIQKLLGHSSLNVTSVYTHTNLDQLRDAISHL 290 >gi|254446539|ref|ZP_05060015.1| tyrosine recombinase XerD [Verrucomicrobiae bacterium DG1235] gi|198260847|gb|EDY85155.1| tyrosine recombinase XerD [Verrucomicrobiae bacterium DG1235] Length = 309 Score = 120 bits (301), Expect = 3e-25, Method: Composition-based stats. Identities = 49/274 (17%), Positives = 98/274 (35%), Gaps = 27/274 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFD----YRKITTKHIRSGVESRKHTPSSAI---QFL 137 L+ N+ +++S Q + ++K+T H+ + + S + L Sbjct: 20 KGLSDNTIENYQSDLSQFLAHVEKSSRVGSWKKLTASHVSDWIYALSEGDYSNASLCRKL 79 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPR 193 +S+R L + +R+ + + V PK + + + +++++ S G + R Sbjct: 80 SSLRSLDAYLMRERKIDKSFTEIVVGPKLRRKAPFTLSIQEVERLLSAPDLTTAQGLRDR 139 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM------ 247 E SGLR S+ +Q + + ++K G+ V P G A+ Sbjct: 140 AMLELFYSSGLRVSELSGLMLQQIDLELGALKIYGKGSKERV-CPMGRKAATAIGDYLRN 198 Query: 248 ------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299 F++ ++ + + AG++K H +R AT Sbjct: 199 GRPRFVKSKTGSAVFLSARGTAISRKTIWVLVRKYTKAAGIDKPVKPHMLRHSFATHLLT 258 Query: 300 AGATAHELMATYGWKTVDQAETYTK-GADRIRLG 332 GA + G + + YT ADR R Sbjct: 259 GGADLRIIQELLGHADIATTQIYTSVEADRTRSA 292 >gi|329667430|gb|AEB93378.1| putative integrase/recombinase [Lactobacillus johnsonii DPC 6026] Length = 307 Score = 120 bits (301), Expect = 3e-25, Method: Composition-based stats. Identities = 42/279 (15%), Positives = 106/279 (37%), Gaps = 26/279 (9%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYF----DQIIRKSGDFDYRKITTKHIRSGVESR 126 LI +++ ++ + + N+ S+ + D G + ++ ++ + +++ Sbjct: 6 DKLIKQFQDYLNYERNYSKNTVNSYLNDLIEAKDFFRENGGFSGWDQVKSRDVEIFLQNL 65 Query: 127 K---HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 + ++ + ++S+R +++ V++E + +P ++ + + + + +++M+Q Sbjct: 66 ATQNRSRTTQARKMSSLRSFYRFLVKREVLENDPMQTISLRLGEKKLPQFFYEKEMRQVF 125 Query: 184 SFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELP 238 + + R FE +G+R S+ + + + + K V Sbjct: 126 DSLAGHEKLVVRNRAMFELFYATGMRLSEMASLKLDQIDFDLKIILVHGKGNKDRYVPFG 185 Query: 239 DGFMKLL-------AMTPIGKE----TFFINNDKQKMNATQFSIWFKAKATKAGVNKS-- 285 L + +GK F+NN QK+ + KAGV Sbjct: 186 KDAASALKEYCDESRLALLGKNEDLGYVFLNNRGQKLTGRGIEYIMQQVFIKAGVGGKVH 245 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R AT + GA + G +++ + YT Sbjct: 246 PHMLRHSFATEMLNNGADLRSVQELLGHESLSTTQIYTH 284 >gi|87309301|ref|ZP_01091437.1| integrase/recombinase [Blastopirellula marina DSM 3645] gi|87287940|gb|EAQ79838.1| integrase/recombinase [Blastopirellula marina DSM 3645] Length = 291 Score = 120 bits (301), Expect = 3e-25, Method: Composition-based stats. Identities = 45/282 (15%), Positives = 97/282 (34%), Gaps = 25/282 (8%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITT---KHIRSGVESRKH 128 ++Y +S LA N+ ++ + R G + R + + + + Sbjct: 2 SAAFTDYLQSE--CHLAANTVAAYRRDLVRFERWLGAREIRTLRVGELSDYVAWLYKEEL 59 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-WS 187 P+S + + S+++ F++ + + N + K + + WS Sbjct: 60 APASIARAVVSLKIFFRYLQLEGILQDNLVELLGSQKIWRRIPSVIAPHKIDDLLTAPWS 119 Query: 188 EGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE-------- 236 E + R E L +G R S+ + + + +K + G+ + Sbjct: 120 EDPYWRRDRALLEVLYATGCRASEVSGLRMDDVHLDEGYVKCEGKGSKQRIAPLAQKSAR 179 Query: 237 -----LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGV 289 L + +L F++ ++++ K A +AG++ S H + Sbjct: 180 VVKTYLDEERPRLSKKNLRDAAFLFLSRSGKRLSRIAIWELVKKYAARAGIDPDVSPHSL 239 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 R AT GA + G ++ + YT D+ RL Sbjct: 240 RHSFATHLLAGGADLRHVQEMMGHASIATTQIYTH-VDQSRL 280 >gi|289595770|ref|YP_003482466.1| integrase family protein [Aciduliprofundum boonei T469] gi|289533557|gb|ADD07904.1| integrase family protein [Aciduliprofundum boonei T469] Length = 270 Score = 120 bits (301), Expect = 3e-25, Method: Composition-based stats. Identities = 36/182 (19%), Positives = 72/182 (39%), Gaps = 8/182 (4%) Query: 159 LSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ 218 + K+K + +++++++ + + + RL FL Y+G+R + + ++ Sbjct: 88 EEIPLAKKKEKLPVVLSRDEVKRMI-YGTHNIKHRLVLMFLYYAGMRLQEVRNIRWEDVE 146 Query: 219 --NNIFSIKTQKTGTIITVELPDGFMKLLAMTPI-GKETFFINNDKQKMNATQFSIWFKA 275 I IK K V L L + K F++ +K + + K Sbjct: 147 FEREIIHIKVAKGDKERVVFLHPNLKNTLEIYGRKSKGYVFMSQRGKKYSPKSIQLIVKN 206 Query: 276 KATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR--IRL 331 A +A +NK + H +R AT + GA + G K + + YT A++ +L Sbjct: 207 AARRAKINKNVTPHTLRHSFATHLLEGGADIRYIQQLLGHKHLKTTQIYTHVANKDIKKL 266 Query: 332 GI 333 Sbjct: 267 AQ 268 >gi|300721450|ref|YP_003710725.1| site-specific tyrosine recombinase [Xenorhabdus nematophila ATCC 19061] gi|297627942|emb|CBJ88488.1| site-specific tyrosine recombinase [Xenorhabdus nematophila ATCC 19061] Length = 304 Score = 120 bits (301), Expect = 3e-25, Method: Composition-based stats. Identities = 42/260 (16%), Positives = 87/260 (33%), Gaps = 20/260 (7%) Query: 85 GSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIRSGVESRKHTP---SSAIQFLT 138 L+ + + + +I K G +++ + ++R V + +S L+ Sbjct: 23 RRLSPLTITHYRHHLTVLAEISLKIGISEWQALDPVNVRLFVSRSRRAGLESASIALRLS 82 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---WSEGSQPRLA 195 ++R W V Q +A NP V P++K + +++ Q + + R Sbjct: 83 ALRSFLDWMVMQGKLAANPAKMVSAPRKKRHLPKNMDVDEVNQLLNINLNDPLSVRDRTM 142 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMKLLAMT------ 248 E + +GLR S+ + + + K V + L Sbjct: 143 LEVMYGAGLRLSELVGLNWRDVDLDSGDVWVRGKGSKERKVPFGRMAQEWLQRWLEMREL 202 Query: 249 --PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATA 304 P F + ++++A F+ + GVN H +R AT ++ Sbjct: 203 FEPENDAVFISSKSGKRISARNVQKRFEQWGIRQGVNSHINPHKLRHSFATHILESSGDL 262 Query: 305 HELMATYGWKTVDQAETYTK 324 + G + + YT Sbjct: 263 RAVQELLGHANLSTTQIYTH 282 >gi|260596035|ref|YP_003208606.1| site-specific tyrosine recombinase XerC [Cronobacter turicensis z3032] gi|260215212|emb|CBA27069.1| Tyrosine recombinase xerC [Cronobacter turicensis z3032] Length = 306 Score = 120 bits (301), Expect = 3e-25, Method: Composition-based stats. Identities = 45/259 (17%), Positives = 87/259 (33%), Gaps = 19/259 (7%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITT-----KHIRSGVESRKH-TPSSAIQFLT 138 L+ + +++E I+ +G+ + + R PSS L+ Sbjct: 26 RQLSPVTLLNYERQLAAIVGLAGEAGLKSWAQCDAAMVRTLAVRSRRAGLGPSSLALRLS 85 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQPRLA 195 ++R F W V Q + NP V PK + +D+ + + R Sbjct: 86 ALRSFFDWQVSQGELKANPAKGVSTPKTPRHLPKNIDVDDVNRLLDIDLNDPLAVRDRAM 145 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT--------IITVELPDGFMKLLAM 247 E + +GLR S+ +HL + G+ V D ++ L + Sbjct: 146 LEIMYGAGLRLSELVNIDCRHLDLASGEVWVMGKGSKERRLPIGRSAVAWIDHWLNLREL 205 Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAH 305 + F++ ++++A F K G+N H +R AT ++ Sbjct: 206 FGPDDDALFLSKQGKRISARNVQKRFAEWGIKQGLNSHVHPHKLRHSFATHMLESSGDLR 265 Query: 306 ELMATYGWKTVDQAETYTK 324 + G + + YT Sbjct: 266 AVQELLGHANLSTTQIYTH 284 >gi|229552209|ref|ZP_04440934.1| site-specific recombinase XerD [Lactobacillus rhamnosus LMS2-1] gi|229314431|gb|EEN80404.1| site-specific recombinase XerD [Lactobacillus rhamnosus LMS2-1] Length = 298 Score = 120 bits (301), Expect = 3e-25, Method: Composition-based stats. Identities = 40/235 (17%), Positives = 80/235 (34%), Gaps = 23/235 (9%) Query: 111 YRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170 + + + + + +S + ++S+R +++ VR + V NP VE K+ Sbjct: 48 VDDLDVQTYLTDLNKQALARTSIARKISSLRSFYRYLVRIDVVKRNPFELVELKKQHHHL 107 Query: 171 IRPWTKEDMQQFKS----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIK 225 + + + ++Q+ + R E L +G+R S+ + + N + Sbjct: 108 PQFFYEAEIQELFKTVEGETPLDQRNRALLEVLYGTGIRVSECANLTLNQVDFNTGLLLI 167 Query: 226 TQKTGTIITVE------------LPDGFMKLLAMTPIGKETFFINNDKQKMNATQ----F 269 K V L DG L+ F+N + + A Sbjct: 168 HGKGNKDRYVPFGRYAQRALQTYLKDGRQTLMNKHDAQHRFVFVNQYGRPITARGIEYIL 227 Query: 270 SIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 K + A ++ H +R AT D GA + G ++ + YT Sbjct: 228 DQLIKQTSLTANIH--PHMLRHSFATHMLDHGADLRTVQELLGHASLSTTQIYTH 280 >gi|163785285|ref|ZP_02179942.1| phage integrase family protein [Hydrogenivirga sp. 128-5-R1-1] gi|159879446|gb|EDP73293.1| phage integrase family protein [Hydrogenivirga sp. 128-5-R1-1] Length = 324 Score = 120 bits (301), Expect = 3e-25, Method: Composition-based stats. Identities = 57/312 (18%), Positives = 106/312 (33%), Gaps = 21/312 (6%) Query: 22 IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKS 81 IYY G++ L + + L K + I K L I EY Sbjct: 10 IYYVEFERGKKRSLK-TKDKALAQRLFNQLKREYLKGKIILLSEGKKIKLSEFIEEYL-- 66 Query: 82 AHW--GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH---IRSGVESRKHTPSSAIQF 136 W + + + ++ +GD + +T KH S + ++ + ++ Sbjct: 67 -EWCRENRSDETFKKARYVLQKLKDHTGDIYIKALTKKHLDEYVSTLLAQGISRTTINIH 125 Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF 196 + +++ AV EYV +P ++ K R ED+ + + + F Sbjct: 126 IRTIKSALTKAVEWEYVQNHPLEGYKQLKVHQTPPRFLLPEDIAKVEKVIDDEFW-LFVF 184 Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT--IITVELPDGFM-KLLAMTPIGKE 253 +Y+G+R + + +H+ N IK +KT T + + +L A TP + Sbjct: 185 RLFVYTGMRLGEIHKLRWKHIDLNRNVIKVEKTKTFQSRVIPIHPKLRAELEARTPAMGK 244 Query: 254 TFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYG 312 K KAG + H +R A++ AG + G Sbjct: 245 VV-------PYAKPTIEHKLKNCFKKAGFKDLRIHDLRHTFASLMVMAGVDLKTVQELLG 297 Query: 313 WKTVDQAETYTK 324 ++ E Y Sbjct: 298 HQSYRTTEIYAH 309 >gi|30020683|ref|NP_832314.1| DNA integration/recombination/invertion protein [Bacillus cereus ATCC 14579] gi|31415821|ref|NP_852561.1| DNA integration/recombination/invertion protein [Bacillus phage phBC6A52] gi|229127965|ref|ZP_04256949.1| DNA integration/recombination/invertion protein [Bacillus cereus BDRD-Cer4] gi|29896235|gb|AAP09515.1| DNA integration/recombination/invertion protein [Bacillus cereus ATCC 14579] gi|228655527|gb|EEL11381.1| DNA integration/recombination/invertion protein [Bacillus cereus BDRD-Cer4] Length = 369 Score = 120 bits (301), Expect = 3e-25, Method: Composition-based stats. Identities = 47/312 (15%), Positives = 109/312 (34%), Gaps = 38/312 (12%) Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVE 124 TLK ++ + + S+ ++ ++++ + +I G K+ HI+ + Sbjct: 60 PSKVTLKDYLNHWLEIKS-MSIEKSTFAGYKAFINQHVIPSIGMVTLHKLNVIHIQKCYK 118 Query: 125 SRKHTPSSAIQFLTSMRVL---FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 + + L R+L AV+Q ++ NP E PK++ I+ WT+E++++ Sbjct: 119 TAIDKGIANNSILLMHRILKSALNLAVKQNIISRNPADFAEIPKKEKTPIQTWTEEEVKK 178 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--------------NNIFSIKTQ 227 F + S+ S+ + + + +G+R + Q + +N + Sbjct: 179 FLA-HSQESRYHIGYLLAITTGMRLGEVLGLRWQDIDFEKHTVTINQTSGHDNKIKKTAK 237 Query: 228 KTGTIITVELPDGFMKLLAMTPI--------------GKETFFINNDKQKMNATQFSIWF 273 + T+ +P+ + L I ++ N + + F F Sbjct: 238 TNSSKRTIPVPNETIAALKKHKILINKEKLRFGSAYLDQDLINCNEFGRIIKRAHFRKSF 297 Query: 274 KAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRL 331 K G+ + H +R AT+ G + G + Y+ + Sbjct: 298 IRMTHKVGIKEIKFHDLRHTHATLLLKQGVNPKIISERLGHTDISMTLSVYSHVL--PNM 355 Query: 332 GIKNSRRISSVV 343 + + + Sbjct: 356 QEEAVKNFGKSI 367 >gi|325141563|gb|EGC64029.1| tyrosine recombinase XerC [Neisseria meningitidis 961-5945] gi|325197634|gb|ADY93090.1| tyrosine recombinase XerC [Neisseria meningitidis G2136] Length = 305 Score = 120 bits (301), Expect = 3e-25, Method: Composition-based stats. Identities = 36/278 (12%), Positives = 85/278 (30%), Gaps = 24/278 (8%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD-------YRKITTKHIRSGV 123 Y ++ + ++ ++ +++ + ++ + + + Sbjct: 6 FAAHFDAYLENIVREGKSEHTVAAYRRDLEELFALLAQMPSEDAGGVPQDLSRRDFTAAL 65 Query: 124 ES---RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 R + + L+S R W V + + +P ++ PK+ + ++E + Sbjct: 66 RRLSQRGLNARTLARKLSSWRQYCVWLVERGLLHTDPTADIKPPKQPERVPKALSQEWLN 125 Query: 181 QFKSF-----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIIT 234 + + FE + SGLR S+ + + + G Sbjct: 126 RMLDLPVDGGDPLAVRDHALFELMYGSGLRVSEIHGLNADDVYLDEAWVHVTGKGRKQRQ 185 Query: 235 VELP----DGFMKL--LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK--AGVNKSA 286 V L + L T + F + +++ Q A + G + S Sbjct: 186 VPLTGKSVEALKNYLPLRQTASDGKALFTGRNGTRLSQRQIQKRLAQWAAQNGDGRHVSP 245 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R A A + G ++ + YTK Sbjct: 246 HMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTK 283 >gi|308173576|ref|YP_003920281.1| site-specific tyrosine recombinase [Bacillus amyloliquefaciens DSM 7] gi|307606440|emb|CBI42811.1| site-specific tyrosine recombinase for chromosome partitioning [Bacillus amyloliquefaciens DSM 7] gi|328553491|gb|AEB23983.1| site-specific tyrosine recombinase XerC [Bacillus amyloliquefaciens TA208] gi|328911717|gb|AEB63313.1| site-specific tyrosine recombinase for chromosome partitioning [Bacillus amyloliquefaciens LL3] Length = 305 Score = 120 bits (301), Expect = 3e-25, Method: Composition-based stats. Identities = 39/276 (14%), Positives = 95/276 (34%), Gaps = 27/276 (9%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV------ESRK 127 L EY + + + + +++ + ++ + + + Sbjct: 11 LFVEYLQIE--KNYSQYTIVNYVNSIEEFGMFLHAQNINGLNEAAYHDVRIFLTEAYEKG 68 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-- 185 + + + ++++R +K+ +R++ V NP V PK++ + ++++++ + Sbjct: 69 LSRKTISKKISALRSFYKFLMREKLVEENPFQLVHLPKQEKRIPKFLYEKELEELFAVSD 128 Query: 186 --WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI----------- 232 G + + E L +G+R S+ C V L + ++ G Sbjct: 129 RSQPSGMRDQALLELLYATGMRVSECCTLTVSDLDLFMDTVLVHGKGRKQRYIPFGSYAR 188 Query: 233 --ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG--VNKSAHG 288 + + + G LL + F+N + A KA ++ H Sbjct: 189 DALELYINSGRQCLLEKAKEPHDVLFVNQRGGPLTARGIRYILSGLVKKASGTLHIHPHM 248 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 +R AT + GA + G + + YT Sbjct: 249 LRHTFATHLLNEGADLRSVQELLGHSNLSSTQIYTH 284 >gi|296330829|ref|ZP_06873304.1| site-specific tyrosine recombinase XerC [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305674347|ref|YP_003866019.1| site-specific tyrosine recombinase for chromosome partitioning [Bacillus subtilis subsp. spizizenii str. W23] gi|296151834|gb|EFG92708.1| site-specific tyrosine recombinase XerC [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305412591|gb|ADM37710.1| site-specific tyrosine recombinase for chromosome partitioning [Bacillus subtilis subsp. spizizenii str. W23] Length = 304 Score = 120 bits (301), Expect = 3e-25, Method: Composition-based stats. Identities = 36/219 (16%), Positives = 79/219 (36%), Gaps = 19/219 (8%) Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 + + + + ++++R +K+ +R++ V NP V PK++ + ++++++ Sbjct: 65 EKGLSRRTISKKISALRSFYKFLMREKLVEENPFQLVHLPKQEKRIPKFLYQKELEELFE 124 Query: 185 F----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-------- 232 G + + E L +G+R S+ C V + + ++ G Sbjct: 125 VSDISQPTGMRDQALLELLYATGMRVSECCSITVNDVDLFMDTVLVHGKGKKQRYIPFGS 184 Query: 233 -----ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG--VNKS 285 + V + G LL + F+N + A KA ++ Sbjct: 185 YAREALKVYMNSGRQCLLMKAKEPHDLLFVNQRGGPLTARGIRHILSGLVQKASGTLHIH 244 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R AT + GA + G + + YT Sbjct: 245 PHMLRHTFATHLLNEGADLRSVQELLGHSNLSSTQIYTH 283 >gi|124514259|gb|EAY55773.1| putative phage integrase family protein [Leptospirillum rubarum] Length = 314 Score = 120 bits (301), Expect = 3e-25, Method: Composition-based stats. Identities = 48/288 (16%), Positives = 96/288 (33%), Gaps = 25/288 (8%) Query: 71 LKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGD-----FDYRKITTKHIRSGVE 124 ++ L+ + + + ++ ++ R G+ D+ H + E Sbjct: 5 VRDLLDAFEEDLRVASGRSPHTTQAYLLDLFAFARFLGEHGLSLLDFSPEDVTHYFAHRE 64 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----Q 180 S + L+++R ++ R+ AI+P ++ P+ +E++ + Sbjct: 65 DLA--MRSRSRVLSAIRSWSRFLKRRGLPAIDP-DTLPVPRLPRNLPGVLDEEEILRLLE 121 Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240 EG + R SGLR S+ + L N I+ G V DG Sbjct: 122 APDPKTDEGIRDRAILATFYASGLRVSELAELTLDRLNLNEEQIRVTGKGQKERVAFLDG 181 Query: 241 F---------MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGV 289 ++ T ++T F+ + + K A + G+++S H + Sbjct: 182 LSCARLKLYLERVRPSTNTAEKTLFLTRRQTGFTRQGLWLLIKGYARQCGIDRSVSPHTL 241 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 R AT G + G + E YT D L ++ Sbjct: 242 RHSFATHLLSHGMDIRSIQILLGHSDIQTTEIYTH-VDIRMLAEDLAK 288 >gi|293393894|ref|ZP_06638201.1| tyrosine recombinase XerC [Serratia odorifera DSM 4582] gi|291423721|gb|EFE96943.1| tyrosine recombinase XerC [Serratia odorifera DSM 4582] Length = 304 Score = 120 bits (301), Expect = 3e-25, Method: Composition-based stats. Identities = 44/259 (16%), Positives = 92/259 (35%), Gaps = 19/259 (7%) Query: 85 GSLAVNSRISFESYFDQIIR---KSGDFDYRKITTKHIR--SGVESRKHTPSSAIQF-LT 138 L+ ++IS+ +I + G ++R++ +R + R SS++ L+ Sbjct: 24 RQLSPLTQISYSRQLQALIALAAELGVSEWRQLDAVTVRQLAARSKRAGLQSSSLALRLS 83 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQPRLA 195 ++R W V Q + NP + P+ + ++M Q + R Sbjct: 84 ALRSFLDWLVSQGQIVANPAKGIRTPRSGRHLPKNIDVDEMGQLLEIDLNDPLAVRDRAM 143 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT--------IITVELPDGFMKLLAM 247 E + +GLR S+ +H+ + G+ V ++ L + Sbjct: 144 LEVMYGAGLRLSELVGLDCRHVDMAAGEVWVMGKGSKERKLPIGRTAVTWLGHWLALREL 203 Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAH 305 G + F++N ++++ F K GV + H +R AT ++ Sbjct: 204 FAPGDDAMFLSNQGKRISPRNVQKRFAEWGVKQGVSSHIHPHKLRHSFATHMLESSGDLR 263 Query: 306 ELMATYGWKTVDQAETYTK 324 + G + + YT Sbjct: 264 AVQELLGHANLTTTQIYTH 282 >gi|119776379|ref|YP_929119.1| integrase/recombinase XerC [Shewanella amazonensis SB2B] gi|171704602|sp|A1SAP3|XERC_SHEAM RecName: Full=Tyrosine recombinase xerC gi|119768879|gb|ABM01450.1| integrase/recombinase XerC [Shewanella amazonensis SB2B] Length = 296 Score = 120 bits (301), Expect = 3e-25, Method: Composition-based stats. Identities = 32/271 (11%), Positives = 93/271 (34%), Gaps = 22/271 (8%) Query: 72 KWL--ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI---RSGVESR 126 WL + Y + L+ + ++ ++ G +++++ + + + + + Sbjct: 6 SWLERFTRYLATER--QLSPMTVRNYRFELERADTLLGQRSWQQLSRQDLSGLMARLHRQ 63 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 +P S ++++ ++ +++ + NP ++ PK+ + + + Sbjct: 64 GLSPRSLSLTASALKQFGQFLLKEGLIDTNPAATLSAPKQSKTLPKNLDPDSVNHLLDIP 123 Query: 187 SE---GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-------- 235 E + + E GLR ++ V+ L ++ G+ + Sbjct: 124 PEDGLALRDKAIMELFYSCGLRLAELAALDVKDLDRESREVRVIGKGSKERILPVGSVAL 183 Query: 236 -ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKF 292 + D K+ P + F+++ +++ + A G+ H +R Sbjct: 184 AAIGDWL-KVRNQMPCQDDALFVSSRGSRLSHRSIQARMEKWAQIQGLSVGVHPHKLRHS 242 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYT 323 AT ++ + G + + YT Sbjct: 243 FATHMLESSGDLRAVQELLGHANLATTQIYT 273 >gi|77463394|ref|YP_352898.1| integrase/recombinase XerD [Rhodobacter sphaeroides 2.4.1] gi|77387812|gb|ABA78997.1| Probable integrase/recombinase XerD [Rhodobacter sphaeroides 2.4.1] Length = 311 Score = 120 bits (301), Expect = 3e-25, Method: Composition-based stats. Identities = 54/287 (18%), Positives = 103/287 (35%), Gaps = 33/287 (11%) Query: 74 LISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGV---ESRK 127 IS + ++ A A N+R+++ G D+ T + + + E++ Sbjct: 9 WISAFLEAQAAELDAARNTRLAYGRDLKDYATWLGRRSEDFLTATRDTVEAYLTFCEAQG 68 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF-KSFW 186 + ++ + L+S+R L+++ + + A NP + + P R + E++ + ++ Sbjct: 69 LSSATRARRLSSIRQLYRFGHEEGWRADNPAIRISGPGRSKRLPKTLEIEEVDRLLEAAR 128 Query: 187 SEGSQP------RLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPD 239 +G + R E L +G+R S+ V + N + K G V L Sbjct: 129 DKGRRAEDQIRNRCLLELLYATGMRVSEMVGLPVAAARGNPRMILVRGKGGKERMVPLSP 188 Query: 240 GFMKLLA----------------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283 + LA P + F + + F + K A AGV+ Sbjct: 189 PAREALADWLRARDAAEAQGQKAGRPASRFLFPGSGAAGHLTREYFYVLVKQIAVLAGVD 248 Query: 284 ---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 + H +R AT GA + G + E YT D Sbjct: 249 PAKVTPHTLRHAFATHLLAGGADLRVIQTLLGHADLSTTEIYTHVLD 295 >gi|294674799|ref|YP_003575415.1| tyrosine recombinase XerC [Prevotella ruminicola 23] gi|294473941|gb|ADE83330.1| tyrosine recombinase XerC [Prevotella ruminicola 23] Length = 292 Score = 120 bits (301), Expect = 3e-25, Method: Composition-based stats. Identities = 44/275 (16%), Positives = 101/275 (36%), Gaps = 24/275 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIR----KSGDFDYRKITTKHIRSGVESRKH 128 +I+++ + + + + ++E + + + T IR +ES Sbjct: 1 MINQFLDYLRYERNTSPLTVQTYEESLRDFESYVTFRDKELSISSVDTDLIRDWMESLMD 60 Query: 129 TPSSA---IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS- 184 +SA + L+++R +++A++++ V +P +V PK+ + + +M + Sbjct: 61 KGNSASTINKKLSALRSFYRFALKRQLVKTDPAHAVIGPKKSKPLPQFLREGEMDRLIDG 120 Query: 185 -FWSE---GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPD 239 W + R +GLR ++ + + + +K T K V Sbjct: 121 IEWDSSFNNVRARTILLLFYEAGLRRAELVSLNDKDVDFDAAQLKVTGKRNKQRIVPFGA 180 Query: 240 GFMKLLAMTPIGKE--------TFFINNDKQKMNATQFSIWFKAK--ATKAGVNKSAHGV 289 + L + F+++ Q+++ +Q K + +S H + Sbjct: 181 ELAEALKQYQTARNEQFGETGGALFLSDKGQRISDSQVYQIVKKYLSMVTSLKKRSPHVL 240 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 R AT + GA + + G +V E YT Sbjct: 241 RHTFATAMLNNGAGLETIKSLLGHASVSTTEIYTH 275 >gi|291558084|emb|CBL35201.1| Site-specific recombinase XerD [Eubacterium siraeum V10Sc8a] Length = 476 Score = 120 bits (301), Expect = 3e-25, Method: Composition-based stats. Identities = 50/316 (15%), Positives = 111/316 (35%), Gaps = 39/316 (12%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFE-SYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129 I + ++ +L + +R +E ++ II + G +++ ++ K Sbjct: 74 FGDWIDFWYQTYCRHTLRITTRTDYENRIYNHIIPEIGKIPLNRLSQSDLQQFYAKEKTD 133 Query: 130 PSS----------AIQFLTSM----RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175 + + + + R + AV++ + NP + + P +K ++ T Sbjct: 134 GRKLHAKTYGKGLSDRTIRGIHANCRTALQRAVQEGLIRTNPAVGCKLPPKKAREMQVLT 193 Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH----------------LQN 219 + ++ +F E L F L +G+R + ++ Sbjct: 194 QNEIIRFLHQAKEEGYYEL-FLLELGTGMRRGEILALKWSDLNFATGELRIGRQVYIIKA 252 Query: 220 NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFI----NNDKQKMNATQFSIWFKA 275 + + +I TV LP +K LA+ ++ ++ ++ + N + + Sbjct: 253 EVIISAPKTKASIRTVILPPSLIKTLAVYKETVDSEWMFPSPTDNGRPRNPSSVRKRLQL 312 Query: 276 KATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADR-IRLG 332 +AG K H +R AT++ + G L AT G + + Y+ D R Sbjct: 313 ILERAGCKKVRFHDLRHTFATMALEHGMDVKTLSATIGHVSSATTLDIYSHITDTMQRQA 372 Query: 333 IKNSRRISSVVDSDDP 348 + R D+ P Sbjct: 373 AVHIDRKIGGTDAQMP 388 >gi|253988421|ref|YP_003039777.1| site-specific tyrosine recombinase XerC [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253988443|ref|YP_003039799.1| site-specific tyrosine recombinase XerC [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253990479|ref|YP_003041835.1| site-specific tyrosine recombinase XerC [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|211638830|emb|CAR67446.1| probable integrase/recombinase [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|211638952|emb|CAR67567.1| probable integrase/recombinase [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253779871|emb|CAQ83032.1| putative phage integrase/recombinase [Photorhabdus asymbiotica] gi|253779893|emb|CAQ83054.1| Phage integrase [Photorhabdus asymbiotica] gi|253781929|emb|CAQ85093.1| phage integrase [Photorhabdus asymbiotica] Length = 340 Score = 120 bits (300), Expect = 4e-25, Method: Composition-based stats. Identities = 40/296 (13%), Positives = 92/296 (31%), Gaps = 32/296 (10%) Query: 63 SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR--------KSGDFDYRKI 114 P TL+ + Y + + + ++ + + + + Sbjct: 4 QPTFTLATLRQQLEAYLEIQTASGHSTRTPETYREWLTPFVDWCEMRAVYHAPQVSLPLL 63 Query: 115 TTKHIRSGVESRKHTPSSAIQ----FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170 + + L +R F+W +++ ++ NP + PK + Sbjct: 64 ESWQRYLRRYRKADGQHYGNNSQLQRLRCLRGWFRWLLQRHHILYNPADMLILPKEEQRL 123 Query: 171 I-RPWTKEDMQQ----FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFS 223 + + + +Q + G + R E L +G+R ++ + + + Sbjct: 124 PAQVLSDVETEQVLNSLDTQTPLGLRNRAVLEALWSTGIRRTELINLRLGDIDRHRGVVV 183 Query: 224 IKTQKTGTIITVELPDGFMKLLAMTPIG----------KETFFINNDKQKMNATQFSIWF 273 ++ K G V + + + L FI ++ + Sbjct: 184 VRQGKNGHDRVVPIGERALAWLERYLADVRPQLAYRYDSGYVFITVRGNPLSRNTLTQMA 243 Query: 274 KA-KATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 +A ++K S H R AT + GA + A G K ++ + YT+ A Sbjct: 244 GHTIREEAKLDKAGSCHVFRHSMATQMLENGADTRHIQAILGHKKLETTQIYTRVA 299 >gi|269956359|ref|YP_003326148.1| tyrosine recombinase XerD [Xylanimonas cellulosilytica DSM 15894] gi|269305040|gb|ACZ30590.1| tyrosine recombinase XerD [Xylanimonas cellulosilytica DSM 15894] Length = 331 Score = 120 bits (300), Expect = 4e-25, Method: Composition-based stats. Identities = 44/307 (14%), Positives = 86/307 (28%), Gaps = 44/307 (14%) Query: 61 INSPRKKPTTLKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDF---------- 109 L+ + +Y L+ N+ ++ + +R Sbjct: 6 APPGVVVSGPLEAALDDYLAHLRVERGLSHNTTAAYRRDLARYVRHLERLGRTSLGAVRE 65 Query: 110 -DYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168 D T + + SS + L ++R ++A + +P V P + Sbjct: 66 DDVTGFVTAVREGADGGARLSASSTARALAAVRGWHRFAHAEGLATQDPAAEVRAPTQLR 125 Query: 169 EGIRPWTKEDMQQFKSFW-----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL------ 217 + + + + + R E L +G R S+ V L Sbjct: 126 RLPHALSVDAVTRLLDAAGVGDGPVPLRDRALLELLYSTGGRISEVVGLDVDALGWLGAG 185 Query: 218 --------QNNIFSIKTQKTGTIITV------------ELPDGFMKLLAMTPIGKETFFI 257 + ++ G + LA G F+ Sbjct: 186 SAPGDGAGDDGPAVVRLHGKGDKQRIVPVGSYAIAALDAYLVRARPALAAAGSGTPALFL 245 Query: 258 NNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTV 316 N + ++ +A + +AG+ N S H +R AT GA + G +V Sbjct: 246 NTRGRPLSRQSAWAVLQAASARAGLENVSPHTLRHSFATHLLQGGADVRVVQELLGHASV 305 Query: 317 DQAETYT 323 + YT Sbjct: 306 TTTQIYT 312 >gi|325912006|ref|ZP_08174408.1| putative tyrosine recombinase XerC [Lactobacillus iners UPII 143-D] gi|325476191|gb|EGC79355.1| putative tyrosine recombinase XerC [Lactobacillus iners UPII 143-D] Length = 307 Score = 120 bits (300), Expect = 4e-25, Method: Composition-based stats. Identities = 35/279 (12%), Positives = 97/279 (34%), Gaps = 26/279 (9%) Query: 72 KWLISEYRKS-AHWGSLAVNSRISFESYFDQ----IIRKSGDFDYRKITTKHIR---SGV 123 + Y + + ++N+ ++ + + G D+ K++++ I + Sbjct: 5 DDFLKLYYNYLKNERNYSINTCKAYMDDLSEARTFFVENGGFIDWLKLSSRDIEIFIQYL 64 Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 +K S+ + ++++R +++ ++ + +NP + + ++M + Sbjct: 65 AQKKDKRSTQSRKISTLRSFYRFLNKRNIIPVNPVELISLRGDHKKLPEFLYSDEMVKVL 124 Query: 184 S----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKT-------G 230 G + E +G+R S+ + + N+ + + G Sbjct: 125 KSISTTTPLGLRNMALLELFYATGMRVSEISNLKLDQIDFELNLILVHGKGNKDRYVAFG 184 Query: 231 TIITVELPDGFMKLLAMT---PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS-- 285 L + ++ F+N++ ++ + K AG++ S Sbjct: 185 EEAKTALNNYLVEARKKLLLHKTDYGYVFLNSNGNRITSRGLEYIIKNIFLNAGISASVH 244 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R AT + GA + G +++ + YT Sbjct: 245 PHMLRHTFATQMLNNGADLRTVQELLGHESISTTQIYTH 283 >gi|255011626|ref|ZP_05283752.1| putative site-specific recombinase [Bacteroides fragilis 3_1_12] gi|313149461|ref|ZP_07811654.1| integrase [Bacteroides fragilis 3_1_12] gi|313138228|gb|EFR55588.1| integrase [Bacteroides fragilis 3_1_12] Length = 293 Score = 120 bits (300), Expect = 4e-25, Method: Composition-based stats. Identities = 44/275 (16%), Positives = 102/275 (37%), Gaps = 24/275 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYF----DQIIRKSGDFDYRKITTKHIRSGV---ES 125 L + + + + + +++ + + + G+F+ ++ + IR + Sbjct: 2 LADSFLDYLRYERNYSEKTVLAYGEDISQLQEFVQEEIGEFNPLEVKPELIREWIVSLMD 61 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 R +T +S + L+S+R +K+ +RQ V+++P + PK K + +M + Sbjct: 62 RGYTSTSVNRKLSSLRSFYKYLLRQGEVSVDPLRKITGPKNKKPLPSFLKESEMNKLLDD 121 Query: 186 WS-----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPD 239 +G + RL E +G+R S+ + + + +K T K + D Sbjct: 122 TDFGEGFKGCRDRLIIEVFYATGMRLSELIGLDDKDVDFSASLLKVTGKRNKQRLIPFGD 181 Query: 240 GFMKLL--------AMTPIGKETFFINNDKQKMNATQFSIWFKA--KATKAGVNKSAHGV 289 + + + + + FF+ + +++ K +S H + Sbjct: 182 ELKEAMFEYVDVRNKVISVKSDAFFVRENGERLYKNLVYNLVKRNLSKVVTLKKRSPHVL 241 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 R AT + A + G ++ E YT Sbjct: 242 RHTFATTMLNNDAELGAVKELLGHSSLATTEIYTH 276 >gi|227325794|ref|ZP_03829818.1| site-specific tyrosine recombinase XerC [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 311 Score = 120 bits (300), Expect = 4e-25, Method: Composition-based stats. Identities = 48/285 (16%), Positives = 100/285 (35%), Gaps = 22/285 (7%) Query: 62 NSPRKKPTT--LKWLISEYRKSAH-WGSLAVNSRISFESYFDQ---IIRKSGDFDYRKIT 115 +P + P++ L+ + + + L+ ++ S+ I+ +G D+R++ Sbjct: 5 PAPSEAPSSSPLQTDVDAFLRYLKVERQLSPLTQTSYLRQLSAVITILSAAGVADWRRLD 64 Query: 116 TKHIRSGVESRKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172 +RS V K SS L+++R W V + + NP V P+ + Sbjct: 65 ASGVRSVVSRSKRDGLHSSSLALRLSALRSFLDWMVSRGVLVANPAKGVSTPRAGRPLPK 124 Query: 173 PWTKEDMQQFKSF---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229 ++ + + R E + +GLR ++ QH+ I Sbjct: 125 NMDVDETNRLLEINLDDPLAVRDRTMLEVMYGAGLRLAELVGMDYQHIDLASGEIWVMGK 184 Query: 230 GTI--------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281 G+ V + ++ L + + FI+N ++++ F K G Sbjct: 185 GSKERKLPIGKTAVTWLERWLALRELFGPQDDAVFISNQGRRISMRNVQKRFAEWGIKQG 244 Query: 282 VN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 +N H +R AT ++ + G + + YT Sbjct: 245 INSHVHPHKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTH 289 >gi|116751213|ref|YP_847900.1| phage integrase family protein [Syntrophobacter fumaroxidans MPOB] gi|116700277|gb|ABK19465.1| phage integrase family protein [Syntrophobacter fumaroxidans MPOB] Length = 304 Score = 120 bits (300), Expect = 4e-25, Method: Composition-based stats. Identities = 44/270 (16%), Positives = 88/270 (32%), Gaps = 28/270 (10%) Query: 86 SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE---------SRKHTPSSAI-- 134 A + ++ + R +G+ + ++ + P SA Sbjct: 25 GRATATIAAYRRDLALVARVAGELAPGIVCRAVTAGFLDQVFSAGAVTESERGPRSAASL 84 Query: 135 -QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS--- 190 + ++R F WAV V NP S+ + + T + ++ + Sbjct: 85 HRMKAAVRAFFAWAVEVGVVDDNPARSIRMQRLPRKLPVFLTTAEKKRLLKELKGRTDFS 144 Query: 191 --QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE---------LPD 239 + R E LL +G+R + + + + ++ + G + V+ L Sbjct: 145 ALRDRAMIEVLLGTGIRLGELAALDMDDIDLDAKHLRVRAKGNVPQVKFIKTDLRTLLRR 204 Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS 297 + E F++N ++ Q + KAG+ K + HG+R AT Sbjct: 205 YLAERRRHGRPEMEALFLSNRDGRLCQRQIANRLAHWLRKAGIEKELTPHGLRHTFATHL 264 Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGAD 327 A + G + V + YT D Sbjct: 265 YGATNDLLVVQRALGHRDVSTTQIYTHLVD 294 >gi|28899755|ref|NP_799360.1| site-specific tyrosine recombinase XerC [Vibrio parahaemolyticus RIMD 2210633] gi|153838746|ref|ZP_01991413.1| tyrosine recombinase XerC [Vibrio parahaemolyticus AQ3810] gi|260878123|ref|ZP_05890478.1| tyrosine recombinase XerC [Vibrio parahaemolyticus AN-5034] gi|260895820|ref|ZP_05904316.1| tyrosine recombinase XerC [Vibrio parahaemolyticus Peru-466] gi|260900847|ref|ZP_05909242.1| tyrosine recombinase XerC [Vibrio parahaemolyticus AQ4037] gi|81726659|sp|Q87KJ6|XERC_VIBPA RecName: Full=Tyrosine recombinase xerC gi|28808007|dbj|BAC61244.1| integrase/recombinase XerC [Vibrio parahaemolyticus RIMD 2210633] gi|149747832|gb|EDM58716.1| tyrosine recombinase XerC [Vibrio parahaemolyticus AQ3810] gi|308087191|gb|EFO36886.1| tyrosine recombinase XerC [Vibrio parahaemolyticus Peru-466] gi|308092778|gb|EFO42473.1| tyrosine recombinase XerC [Vibrio parahaemolyticus AN-5034] gi|308110579|gb|EFO48119.1| tyrosine recombinase XerC [Vibrio parahaemolyticus AQ4037] Length = 310 Score = 120 bits (300), Expect = 4e-25, Method: Composition-based stats. Identities = 36/278 (12%), Positives = 93/278 (33%), Gaps = 21/278 (7%) Query: 68 PTTLKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV--- 123 P +L+ + + + L+++++ +++ + + + + + + Sbjct: 10 PNSLQKPLERFYEFLRSEKGLSLHTQRNYKQQLETMAQHLAEMGLKDWSQVDAGWVRQLA 69 Query: 124 ---ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 SS L+S+R F + + + ++ NP V P++K + +++ Sbjct: 70 GKGMREGMKASSLATRLSSLRSFFDFLILRGEMSANPAKGVSAPRKKRPLPKNLDVDEVN 129 Query: 181 QFKSF---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE 236 Q + R E + +GLR ++ V+ +Q ++ K V Sbjct: 130 QLLEVNEDDPLAIRDRAMMELMYGAGLRLAELVSVDVRDVQLRSGELRVIGKGDKERKVP 189 Query: 237 --------LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSA 286 + + G+ F++ +++ K V + S Sbjct: 190 FSGMATEWVGKWLRVRGDLAAPGEPALFVSKLGTRISHRSVQKRMAEWGQKQSVASHISP 249 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R AT ++ + G + + + YT Sbjct: 250 HKLRHSFATHMLESSNNLRAVQELLGHENISTTQIYTH 287 >gi|85858465|ref|YP_460667.1| integrase family protein [Syntrophus aciditrophicus SB] gi|85721556|gb|ABC76499.1| integrase family protein [Syntrophus aciditrophicus SB] Length = 421 Score = 120 bits (300), Expect = 4e-25, Method: Composition-based stats. Identities = 50/309 (16%), Positives = 102/309 (33%), Gaps = 23/309 (7%) Query: 49 SALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF--DQIIRKS 106 A K+ + K+ T +Y K ++ +A E + I Sbjct: 97 KARKQEEAKQAEVEKKEKESITFG----KYFKDTYFPDMAHKKSKDVEQFIYDKWICPLI 152 Query: 107 GDFDYRKITTKHIRSGVESRKHT---PSSAIQFLTSMRVLFKWAVRQEYVAIN-PCLSVE 162 G +T H++ ++ + + + + ++ A + + V + P V+ Sbjct: 153 GKLRINDLTDFHLKKIKKNMEDSGKAVRTIHYAFAIVSQVWNRARKDKIVQRDCPTRDVK 212 Query: 163 RPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFE-FLLYSGLRCSDSCRAGVQ--HLQN 219 P+ + R + ++ ++ S+ LY+G R + + +L++ Sbjct: 213 LPRIDNQKKRFLSPQEANDLLAYLKNKSRQLYELAYLSLYTGARFGELAGLTWRRINLKD 272 Query: 220 NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK 279 + K+G TV + +G L P GK I D++ S F Sbjct: 273 GSIIFRNTKSGKDRTVFMTEGVKALFEAMPEGKADDLIFPDRKGKRLFSVSATFDRAIAD 332 Query: 280 AGVNK---------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRI 329 G+NK + H +R A+ + G + G Y+ AD I Sbjct: 333 LGLNKGVVDPRDKITFHSLRHTHASWLVNNGTNLFLVKEILGHADFKMTTRYSHPAADSI 392 Query: 330 RLGIKNSRR 338 R + + Sbjct: 393 RQAMVGLEK 401 >gi|295706292|ref|YP_003599367.1| tyrosine recombinase XerC [Bacillus megaterium DSM 319] gi|294803951|gb|ADF41017.1| tyrosine recombinase XerC [Bacillus megaterium DSM 319] Length = 300 Score = 120 bits (300), Expect = 4e-25, Method: Composition-based stats. Identities = 40/236 (16%), Positives = 89/236 (37%), Gaps = 20/236 (8%) Query: 115 TTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174 + + + ++++ S + ++ +R +++ R+E V NP V PK++ R Sbjct: 55 DARLFLTRLYEKQYSKRSMSRKISCLRTFYRYLNREELVEDNPFALVTLPKKEERNPRFL 114 Query: 175 TKEDMQQFKSF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230 +E++ + G + + E L +G+R S+ + + ++ ++ G Sbjct: 115 YEEEIVKLFQMNDLTTPLGQRNQSLLELLYATGIRVSECSSIKLSDIDFSLQTLLVYGKG 174 Query: 231 TI-------------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKA-- 275 + V + +G LL P + F+N + + Sbjct: 175 KKQRYVPFGCYAKGALRVYIDNGRKLLLKKAPSDTHSLFLNYKGTPLTDRGIRLVIDQLV 234 Query: 276 KATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIR 330 K T ++ S H +R AT + GA + G + + + YT DR++ Sbjct: 235 KKTAENIHISPHVLRHTFATHMLNEGADLRTVQEMLGHEHLSTTQIYTHVTKDRLK 290 >gi|309804146|ref|ZP_07698224.1| putative tyrosine recombinase XerC [Lactobacillus iners LactinV 11V1-d] gi|315653524|ref|ZP_07906445.1| tyrosine recombinase XerC [Lactobacillus iners ATCC 55195] gi|308163729|gb|EFO65998.1| putative tyrosine recombinase XerC [Lactobacillus iners LactinV 11V1-d] gi|315489215|gb|EFU78856.1| tyrosine recombinase XerC [Lactobacillus iners ATCC 55195] Length = 307 Score = 120 bits (300), Expect = 4e-25, Method: Composition-based stats. Identities = 36/279 (12%), Positives = 98/279 (35%), Gaps = 26/279 (9%) Query: 72 KWLISEYRKS-AHWGSLAVNSRISFESYFDQ----IIRKSGDFDYRKITTKHIR---SGV 123 + Y + + ++N+ ++ + + G D+ K++++ I + Sbjct: 5 DDFLKLYYNYLKNERNYSINTCKAYMDDLSEARTFFVENGGFIDWIKLSSRDIEIFIQYL 64 Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 +K S+ + ++++R +++ ++ + +NP + + ++M + Sbjct: 65 AQKKDKRSTQSRKISTLRSFYRFLNKRNIIPVNPVELISLRGEHKKLPEFLYNDEMVKVL 124 Query: 184 S----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKT-------G 230 G + E +G+R S+ ++ + N+ + + G Sbjct: 125 KSISTTTPLGLRNMALLELFYATGMRVSEIANLKLEQIDFELNLILVHGKGNKDRYVAFG 184 Query: 231 TIITVELPDGFMKLLAMT---PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS-- 285 L + ++ F+N++ ++ + K AGV+ S Sbjct: 185 EEAKTALNNYLVEARKKLLLHKTDYGYVFLNSNGNRITSRGLEYIIKNIFLNAGVSASVH 244 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R AT + GA + G +++ + YT Sbjct: 245 PHMLRHTFATQMLNNGADLRTVQELLGHESISTTQIYTH 283 >gi|15827711|ref|NP_301974.1| site-specific tyrosine recombinase XerD [Mycobacterium leprae TN] gi|221230188|ref|YP_002503604.1| site-specific tyrosine recombinase XerD [Mycobacterium leprae Br4923] gi|34222781|sp|Q49890|XERD_MYCLE RecName: Full=Tyrosine recombinase xerD gi|2065218|emb|CAB08282.1| XerD [Mycobacterium leprae] gi|13093262|emb|CAC31746.1| integrase/recombinase [Mycobacterium leprae] gi|219933295|emb|CAR71460.1| integrase/recombinase [Mycobacterium leprae Br4923] Length = 316 Score = 120 bits (300), Expect = 4e-25, Method: Composition-based stats. Identities = 48/296 (16%), Positives = 96/296 (32%), Gaps = 42/296 (14%) Query: 70 TLKWLISEYRKSAHW----GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH----IRS 121 T L ++ + + S+A N+ S+ + + D + Sbjct: 2 TTAALQTQLQGYLDYLIIERSIAANTLSSYRRDLIRYSKHLSDRGIEDLAKVGEHDVSEF 61 Query: 122 GVESRKHTPSS---------AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172 V R+ P S A + L ++R L ++AV + V ++ +V P + Sbjct: 62 LVALRRGDPDSGVAALSAVSAARALIAVRGLHRFAVAEGLVDLDVARAVRPPTPGRRLPK 121 Query: 173 PWTKEDMQQF--------KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFS 223 T +++ ++ + R E L +G R S++ V + Sbjct: 122 SLTVDEVLALLESVGGESRADGPLVLRNRALLELLYSTGSRISEAVGLDVDDVDTQARTV 181 Query: 224 IKTQKTGTIITVELPDGFMKLLAMTPIGKET--------------FFINNDKQKMNATQF 269 + K G V + ++ L + + F+N +++ Sbjct: 182 LLQGKGGKQRLVPVGRPAVQALDAYLVRGRSDLARRGPGMLATPAIFLNARGGRLSRQSA 241 Query: 270 SIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 + A AG+ S H +R AT + GA + G +V + YT Sbjct: 242 WQVLQDAAEHAGITSGVSPHMLRHSFATHLLEGGADIRVVQELMGHASVTTTQIYT 297 >gi|308389967|gb|ADO32287.1| putative integrase/recombinase [Neisseria meningitidis alpha710] gi|325131510|gb|EGC54217.1| tyrosine recombinase XerC [Neisseria meningitidis M6190] gi|325139236|gb|EGC61782.1| tyrosine recombinase XerC [Neisseria meningitidis ES14902] Length = 305 Score = 120 bits (300), Expect = 4e-25, Method: Composition-based stats. Identities = 36/278 (12%), Positives = 84/278 (30%), Gaps = 24/278 (8%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD-------YRKITTKHIRSGV 123 Y ++ + ++ ++ +++ + ++ + + + Sbjct: 6 FAAHFDAYLENIVREGKSEHTVAAYRRDLEELFALLAQMPSEDAGGVPQDLSRRDFTAAL 65 Query: 124 ES---RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 R + + L+S R W V + + +P ++ PK+ + +E + Sbjct: 66 RRLSQRGLNARTLARKLSSWRQYCVWLVERGLLHTDPTADIKPPKQPERVPKALPQEWLN 125 Query: 181 QFKSF-----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIIT 234 + + FE + SGLR S+ + + + G Sbjct: 126 RMLDLPVDGGDPLAVRDHALFELMYGSGLRVSEIHGLNADDVYLDEAWVHVTGKGRKQRQ 185 Query: 235 VELP----DGFMKL--LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK--AGVNKSA 286 V L + L T + F + +++ Q A + G + S Sbjct: 186 VPLTGKSVEALKNYLPLRQTASDGKALFTGRNGTRLSQRQIQKRLAQWAAQNGDGRHVSP 245 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R A A + G ++ + YTK Sbjct: 246 HMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTK 283 >gi|212550782|ref|YP_002309099.1| site-specific recombinase XerC [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] gi|212549020|dbj|BAG83688.1| site-specific recombinase XerC [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] Length = 299 Score = 120 bits (300), Expect = 4e-25, Method: Composition-based stats. Identities = 47/262 (17%), Positives = 95/262 (36%), Gaps = 22/262 (8%) Query: 85 GSLAVNSRISFESYF---DQIIRKSGDFDYRKITTKHIRSGV---ESRKHTPSSAIQFLT 138 + +V + ++ ++ + S FD R IT+ IR + R ++P S + L+ Sbjct: 21 RNYSVRTLKTYCDDLVQFERFVFCSEGFDMRTITSSVIREWIVFLMDRNYSPRSVNRKLS 80 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS-----QPR 193 ++R F++ R + NP + + +M S+G + R Sbjct: 81 TLRSFFRYLYRNGQIESNPVKGIVGVRTGRPLPYFVRDREMNTLLLDLSKGEGFEDERDR 140 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLAMTPIGK 252 E +G+RCS+ + + I+ T K + ++L+ + Sbjct: 141 TILEVFYSTGIRCSELVGLNDEDIDFESCLIRVTGKGNKQRLIPFSKTLEEILSYYKTIR 200 Query: 253 E--------TFFINNDKQKMNATQFSIWFKAKATKA--GVNKSAHGVRKFSATISADAGA 302 + FF+ D + +N K + + +S H +R AT + GA Sbjct: 201 DETIWDVSKAFFVREDGRSLNYNIVYRIVKKRLSDIPNLPKRSPHVLRHTFATSMLNNGA 260 Query: 303 TAHELMATYGWKTVDQAETYTK 324 + + G ++ E YT Sbjct: 261 NLNAVKELLGHSSLASTEIYTH 282 >gi|309805721|ref|ZP_07699761.1| putative tyrosine recombinase XerC [Lactobacillus iners LactinV 09V1-c] gi|308164974|gb|EFO67217.1| putative tyrosine recombinase XerC [Lactobacillus iners LactinV 09V1-c] Length = 300 Score = 120 bits (300), Expect = 4e-25, Method: Composition-based stats. Identities = 35/265 (13%), Positives = 95/265 (35%), Gaps = 25/265 (9%) Query: 85 GSLAVNSRISFESYFDQ----IIRKSGDFDYRKITTKHIR---SGVESRKHTPSSAIQFL 137 + ++N+ ++ + + G D+ K++++ I + +K S+ + + Sbjct: 12 RNYSINTCKAYMDDLSEARTFFVENGGFIDWIKLSSRDIEIFIQYLAQKKDKRSTQSRKI 71 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS----FWSEGSQPR 193 +++R +++ ++ + +NP + + ++M + G + Sbjct: 72 STLRSFYRFLNKRNIIPVNPVELISLRGEHKKLPEFLYNDEMVKVLKSISTTTPLGLRNM 131 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKT-------GTIITVELPDGFMKL 244 E +G+R S+ ++ + N+ + + G L + ++ Sbjct: 132 ALLELFYATGMRVSEIANLKLEQIDFELNLILVHGKGNKDRYVAFGEEAKTALNNYLVEA 191 Query: 245 LAMT---PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISAD 299 F+N++ ++ + K AGV+ S H +R AT + Sbjct: 192 RKKLLLHKTDYGYVFLNSNGNRITSRGLEYIIKNIFLNAGVSASVHPHMLRHTFATQMLN 251 Query: 300 AGATAHELMATYGWKTVDQAETYTK 324 GA + G +++ + YT Sbjct: 252 NGADLRTVQELLGHESISTTQIYTH 276 >gi|85060322|ref|YP_456024.1| site-specific tyrosine recombinase XerC [Sodalis glossinidius str. 'morsitans'] gi|84780842|dbj|BAE75619.1| phage integrase [Sodalis glossinidius str. 'morsitans'] Length = 303 Score = 120 bits (300), Expect = 4e-25, Method: Composition-based stats. Identities = 41/258 (15%), Positives = 86/258 (33%), Gaps = 19/258 (7%) Query: 86 SLAVNSRISFESYFDQ---IIRKSGDFDYRKITTKHIRSGVESRKHTP---SSAIQFLTS 139 L+ +R S++ +I + G ++R++ +R+ K +S L++ Sbjct: 24 QLSAKTRESYQRQLYTVIVLIDEMGLTEWRQLEVSQVRALAARSKRQGLQSASLALRLSA 83 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK---SFWSEGSQPRLAF 196 +R W V + + NP V P+ + +++ + + R Sbjct: 84 LRSFLDWLVSTDALGANPARGVSAPRHGRHLPKNMDVDEVDHLLDIDTRDPLALRDRAML 143 Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI--------ITVELPDGFMKLLAMT 248 E + +GLR ++ + ++ G V ++ L Sbjct: 144 EVMYGAGLRLAELVGLNCADVDLGGGEVRVVGKGNKERKLPIGATAVTWLTRWLTLRDRY 203 Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHE 306 + FI N ++++A F K GVN H +R AT ++ Sbjct: 204 APKDDAVFIANSGRRISARNVQKRFAEWGVKQGVNSHIHPHKLRHSFATHMLESSGNLRA 263 Query: 307 LMATYGWKTVDQAETYTK 324 + G + + YT Sbjct: 264 VQELLGHANLSTTQIYTH 281 >gi|262392887|ref|YP_003284741.1| tyrosine recombinase XerC [Vibrio sp. Ex25] gi|262336481|gb|ACY50276.1| tyrosine recombinase XerC [Vibrio sp. Ex25] Length = 310 Score = 120 bits (300), Expect = 4e-25, Method: Composition-based stats. Identities = 36/278 (12%), Positives = 93/278 (33%), Gaps = 21/278 (7%) Query: 68 PTTLKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV--- 123 P +L+ + + + L+++++ +++ + + + + + + Sbjct: 10 PNSLQKPLERFYEFLRSEKGLSLHTQRNYKQQLETMAQHLAEMGLKDWSQVDAGWVRQLA 69 Query: 124 ---ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 SS L+S+R F + + + ++ NP V P++K + +++ Sbjct: 70 GKGMREGMKASSLATRLSSLRSFFDFLILRGEMSANPAKGVSAPRKKRPLPKNLDVDEVS 129 Query: 181 QFKSF---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE 236 Q + R E + +GLR ++ V+ +Q ++ K V Sbjct: 130 QLLEVNEDDPLAVRDRAMMELMYGAGLRLAELVSVDVRDVQLRSGELRVIGKGDKERKVP 189 Query: 237 --------LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSA 286 + + G+ F++ +++ K V + S Sbjct: 190 FSGMATEWVAKWLKVRGDLAAPGEPALFVSKLGTRISHRSVQKRMAEWGQKQSVASHISP 249 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R AT ++ + G + + + YT Sbjct: 250 HKLRHSFATHMLESSNNLRAVQELLGHENISTTQIYTH 287 >gi|257458423|ref|ZP_05623565.1| tyrosine recombinase XerC [Treponema vincentii ATCC 35580] gi|257444227|gb|EEV19328.1| tyrosine recombinase XerC [Treponema vincentii ATCC 35580] Length = 304 Score = 120 bits (300), Expect = 4e-25, Method: Composition-based stats. Identities = 40/282 (14%), Positives = 91/282 (32%), Gaps = 33/282 (11%) Query: 76 SEYRK-SAHWGSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGVESRKHT--- 129 +Y SA + + ++ + + + +++ +R V + Sbjct: 6 EDYLAYSAGVRHFSEKTIEAYRNDLKLFSAWLAENELPFTEVSKVQVRIFVADLGNRHFA 65 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 P+S + L+ +R L+++A+++ NP + K+ + R ++ ++F F E Sbjct: 66 PASVNRILSCVRGLYRYALQKGLCTTNPAALIRNLKQPDKLPRFLFPDEAERFCEFPKEA 125 Query: 190 -----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFMK 243 ++ F L +G R ++ + L+ ++I K V D + Sbjct: 126 GILWYARDAALFSSLYSTGCRAAELQGLKITDLKGECRWAIVRGKGSKERKVFFADFAQE 185 Query: 244 LLAM-------------------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAG--V 282 + TP+ +E F+N + Sbjct: 186 AVQRYLTERAELIAYLKEQDGLKTPVAEEALFLNCRGGALTTQGIRYIIDRYTALLPNYK 245 Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 + H R A++ GA + G + + YT Sbjct: 246 KLTPHAFRHSFASMFITRGADIRVVQELLGHSNIATTQRYTH 287 >gi|218767552|ref|YP_002342064.1| putative integrase/recombinase [Neisseria meningitidis Z2491] gi|34223069|sp|Q9JW14|XERC_NEIMA RecName: Full=Tyrosine recombinase xerC gi|121051560|emb|CAM07858.1| putative integrase/recombinase [Neisseria meningitidis Z2491] gi|319409816|emb|CBY90124.1| tyrosine recombinase XerC [Neisseria meningitidis WUE 2594] Length = 305 Score = 120 bits (300), Expect = 4e-25, Method: Composition-based stats. Identities = 36/278 (12%), Positives = 85/278 (30%), Gaps = 24/278 (8%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD-------YRKITTKHIRSGV 123 Y ++ + ++ ++ +++ + ++ + + + Sbjct: 6 FAAHFDAYLENIVREGKSEHTVAAYRRDLEELFALLAQMPSEDAGGVPQGLSQRDFTAAL 65 Query: 124 ES---RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 R + + L+S R W V++ + +P ++ PK+ + +E + Sbjct: 66 RRLSQRGLNARTLARKLSSWRQYCAWLVKRGLLHTDPTADIKPPKQPERVPKALPQEWLN 125 Query: 181 QFKSF-----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIIT 234 + + FE + SGLR S+ + + + G Sbjct: 126 RMLDLPVDGGDPLAVRDHALFELMYGSGLRVSEIHGLNADDVYLDEAWVHVTGKGRKQRQ 185 Query: 235 VELP----DGFMKL--LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK--AGVNKSA 286 V L + L T + F + +++ Q A + G + S Sbjct: 186 VPLTGKSVEALKNYLPLRQTASDGKALFTGRNGTRLSQRQIQKRLAQWAAQNGDGRHVSP 245 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R A A + G ++ + YTK Sbjct: 246 HMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTK 283 >gi|296125451|ref|YP_003632703.1| integrase family protein [Brachyspira murdochii DSM 12563] gi|296017267|gb|ADG70504.1| integrase family protein [Brachyspira murdochii DSM 12563] Length = 310 Score = 120 bits (300), Expect = 4e-25, Method: Composition-based stats. Identities = 37/279 (13%), Positives = 99/279 (35%), Gaps = 23/279 (8%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDY-----RKITTKHIRSGVESRKH 128 L+ E+ + A ++ S+ + + + + + ++S+ Sbjct: 17 LLDEFSDYLQTLNFAAHTINSYNKDLKEYFNFLESKNILLDNADHYSVRDYLTFLKSKSL 76 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 T S+ + L+S++ +K+ +R + ++ PKR+ + + +D+ + + + Sbjct: 77 TNSTMSRHLSSIKKFYKYLIRNGLSDKTRIVDMKSPKREEHIAKFLSLDDIDRILAIDDD 136 Query: 189 GS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII-TVELPD---- 239 G + ++ F+ GLR S+ + ++ +++ G+ + + + Sbjct: 137 GDFTLLRDKMMALFMYAIGLRVSELASLRLSMIKKGDETLRICGKGSKVRDIPVLPVVYE 196 Query: 240 -------GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVR 290 + + FIN + ++ K A + + S H +R Sbjct: 197 NWDIYMEKRRMIQKEYSQNNDYLFINRFGKPISDRSIRTSMKRLIRNANISMDFSPHTLR 256 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 AT + A + G +T+ + YT + Sbjct: 257 HTFATHLLNNDAEIRGVQELLGHETIATTQRYTHVTNSR 295 >gi|254168378|ref|ZP_04875223.1| site-specific recombinase, phage integrase family protein [Aciduliprofundum boonei T469] gi|197622659|gb|EDY35229.1| site-specific recombinase, phage integrase family protein [Aciduliprofundum boonei T469] Length = 255 Score = 120 bits (300), Expect = 4e-25, Method: Composition-based stats. Identities = 36/182 (19%), Positives = 72/182 (39%), Gaps = 8/182 (4%) Query: 159 LSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ 218 + K+K + +++++++ + + + RL FL Y+G+R + + ++ Sbjct: 73 EEIPLAKKKEKLPVVLSRDEVKRMI-YGTHNIKHRLVLMFLYYAGMRLQEVRNIRWEDVE 131 Query: 219 --NNIFSIKTQKTGTIITVELPDGFMKLLAMTPI-GKETFFINNDKQKMNATQFSIWFKA 275 I IK K V L L + K F++ +K + + K Sbjct: 132 FEREIIHIKVAKGDKERVVFLHPNLKNTLEIYGRKSKGYVFMSQRGKKYSPKSIQLIVKN 191 Query: 276 KATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR--IRL 331 A +A +NK + H +R AT + GA + G K + + YT A++ +L Sbjct: 192 AARRAKINKNVTPHTLRHSFATHLLEGGADIRYIQQLLGHKHLKTTQIYTHVANKDIKKL 251 Query: 332 GI 333 Sbjct: 252 AQ 253 >gi|303232676|ref|ZP_07319361.1| phage integrase, N-terminal SAM domain protein [Atopobium vaginae PB189-T1-4] gi|302481162|gb|EFL44237.1| phage integrase, N-terminal SAM domain protein [Atopobium vaginae PB189-T1-4] Length = 346 Score = 120 bits (300), Expect = 4e-25, Method: Composition-based stats. Identities = 52/300 (17%), Positives = 98/300 (32%), Gaps = 52/300 (17%) Query: 85 GSLAVNSRISFESYFDQ-----IIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139 +L+ N+ ++ D + R+ + + + SR + + + L++ Sbjct: 36 RNLSHNTLRAYSIDLDAYIAWVLARQYDALSITHRQLREYLASLSSRGYATRTINRHLSA 95 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----QQFKSFWSEGSQPRLA 195 +R +KW V Q Y + ++ PK R D+ F EG + R Sbjct: 96 IRSWYKWFVWQGYTTSDAPAALASPKNPKTLPRVLNHHDITTLFNAFDESTPEGVRDRCF 155 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-----ELPDGFMKLL----- 245 E L +G R S++ + + + + I+ G+ + + E D + + Sbjct: 156 VEVLYATGCRISEAAQLTLGDIDMHEAQIRLFGKGSKMRIVPVYKECLDELSEYITKARP 215 Query: 246 ------------------AMTPIGK-------ETFFINNDKQKMNATQFSIWFKAKATKA 280 A P FI+ M+AT F + KA Sbjct: 216 RLLAARTATSRRRAAGKSAAVPTRGTAATGASNRLFISTRGNPMSATALRYVFDSYIEKA 275 Query: 281 GVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRR 338 + S H +R AT GA + G ++ + YT + I +R Sbjct: 276 NLPATLSPHSMRHTFATDLLSGGADLRSVQELLGHSSLSTTQIYTH------VSIDAMKR 329 >gi|197116868|ref|YP_002137295.1| site-specific recombinase, XerC [Geobacter bemidjiensis Bem] gi|197086228|gb|ACH37499.1| site-specific recombinase, XerC [Geobacter bemidjiensis Bem] Length = 293 Score = 120 bits (300), Expect = 4e-25, Method: Composition-based stats. Identities = 40/260 (15%), Positives = 84/260 (32%), Gaps = 21/260 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFD-------YRKITTKHIRSGVESRKHTPSSAIQFL 137 +++ ++ ++ S +Q + + + + + SS + L Sbjct: 16 RNVSPHTLAAYRSDLEQFLSFLAREREAPRAEEVDHLAIRRYLAQLHKGCAK-SSIGRKL 74 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPR 193 +++R LF++ +R+ + NP V PK++ + + + + + R Sbjct: 75 SAIRALFRYLMREGKLEKNPAELVSTPKKEKRLPFHLNIDQVSALVTAPAGSSGLPLRDR 134 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLL------A 246 E L G+R S+ V + + K G V + L Sbjct: 135 AVLETLYSCGIRVSELTGMNVGDMDLAAGLARVMGKGGKERLVPVGSCARSALAAYLAER 194 Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKA--TKAGVNKSAHGVRKFSATISADAGATA 304 P E +N ++ + A A S H +R AT + GA Sbjct: 195 ADPGPAEPLILNARGGRLTRRSVARIVDAHMLLIAAMRKVSPHTLRHTFATHLLEGGADL 254 Query: 305 HELMATYGWKTVDQAETYTK 324 + G ++ + YT Sbjct: 255 RAIQELLGHASLSTTQKYTH 274 >gi|296503148|ref|YP_003664848.1| DNA integration/recombination/invertion protein [Bacillus thuringiensis BMB171] gi|296324200|gb|ADH07128.1| DNA integration/recombination/invertion protein [Bacillus thuringiensis BMB171] Length = 369 Score = 120 bits (300), Expect = 4e-25, Method: Composition-based stats. Identities = 47/312 (15%), Positives = 108/312 (34%), Gaps = 38/312 (12%) Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVE 124 TLK ++ + + S+ ++ ++++ + +I G K+ HI+ + Sbjct: 60 PSKVTLKDYLNHWLEIKS-MSIEKSTFAGYKAFINQHVIPSIGMVALHKLNVIHIQKCYK 118 Query: 125 SRKHTPSSAIQFLTSMRVL---FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 + + L R+L AV+Q ++ NP E PK++ I+ WT+E++++ Sbjct: 119 TAIDKGIANNSILLMHRILKSALNLAVKQNIISRNPTDFAEIPKKEKTPIQTWTEEEVKK 178 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--------------NNIFSIKTQ 227 F + S+ S+ + + + +G+R + Q + +N + Sbjct: 179 FLA-HSQESRYHIGYLLAITTGMRLGEVLGLRWQDIDFEKHTVTINQTSGHDNKIKKTAK 237 Query: 228 KTGTIITVELPDGFMKLLAMTPI--------------GKETFFINNDKQKMNATQFSIWF 273 + T+ +P + L I ++ N + + F F Sbjct: 238 TNSSKRTIPVPIETIAALKRHKILINKEKLRFGSAYLDQDLINCNEFGRIIKRAHFRKSF 297 Query: 274 KAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRL 331 K G+ + H +R AT+ G + G + Y+ + Sbjct: 298 IRMTHKVGIKEIKFHDLRHTHATLLLKQGVNPKIISERLGHTDISMTLSVYSHVL--PNM 355 Query: 332 GIKNSRRISSVV 343 + + + Sbjct: 356 QEEAVKNFGKSI 367 >gi|328472418|gb|EGF43284.1| site-specific tyrosine recombinase XerC [Vibrio parahaemolyticus 10329] Length = 310 Score = 120 bits (300), Expect = 4e-25, Method: Composition-based stats. Identities = 36/278 (12%), Positives = 94/278 (33%), Gaps = 21/278 (7%) Query: 68 PTTLKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV--- 123 P++L+ + + + L+++++ +++ + + + + + + Sbjct: 10 PSSLQKPLERFYEFLRSEKGLSLHTQRNYKQQLETMAQHLAEMGLKDWSQVDAGWVRQLA 69 Query: 124 ---ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 SS L+S+R F + + + ++ NP V P++K + +++ Sbjct: 70 GKGMREGMKASSLATRLSSLRSFFDFLILRGEMSANPAKGVSAPRKKRPLPKNLDVDEVN 129 Query: 181 QFKSF---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE 236 Q + R E + +GLR ++ V+ +Q ++ K V Sbjct: 130 QLLEVNEDDPLAIRDRAMMELMYGAGLRLAELVSVDVRDVQLRSGELRVIGKGDKERKVP 189 Query: 237 --------LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSA 286 + + G+ F++ +++ K V + S Sbjct: 190 FSGMATEWVGKWLRVRGDLAAPGEPALFVSKLGTRISHRSVQKRMAEWGQKQSVASHISP 249 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R AT ++ + G + + + YT Sbjct: 250 HKLRHSFATHMLESSNNLRAVQELLGHENISTTQIYTH 287 >gi|219854481|ref|YP_002471603.1| hypothetical protein CKR_1138 [Clostridium kluyveri NBRC 12016] gi|219568205|dbj|BAH06189.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 295 Score = 120 bits (300), Expect = 4e-25, Method: Composition-based stats. Identities = 41/277 (14%), Positives = 101/277 (36%), Gaps = 22/277 (7%) Query: 78 YRKSAHWGSLAVNSRISFESYFDQ----IIRKSGD-FDYRKITTKHIRSGVESRKHTPSS 132 Y + ++ N+ ++ ++ I ++ G+ + ++ ++ SS Sbjct: 11 YAEQLEKKHMSKNTLDAYIRDINRFYNFIKKREGNLKEVEVVSIMAYVQYLQKEGKAISS 70 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----E 188 ++ + S+R +K+ + + + NP L E PK K + T +++ + + Sbjct: 71 IVRNIVSLRNFYKYLMVKGVINENPLLYYEIPKVKHNIPKVLTVDEVDKLLDSPDSTTYK 130 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ--KTGTIITVELP----DGFM 242 G + + E + +G++ + + + I+ + K + V + Sbjct: 131 GIRDKAMLEIMYAAGMKVMELLTLTIYDIDLKFSYIRCKSLKNKERL-VPIGSVAVQYLK 189 Query: 243 KLLAMTPIGK----ETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATI 296 L + P +T F+N M+ F K A ++ ++K A +R A Sbjct: 190 NYLDIRPQLNIYNLDTLFLNLRGAAMSRQGFWKIVKYYAKESKIDKDINAFTLRHSFAVH 249 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 GA + G K + + Y+ + ++ Sbjct: 250 LLQNGADIKSVQELLGHKDLSATQIYSAVLKKNKIAE 286 >gi|153953866|ref|YP_001394631.1| hypothetical protein CKL_1241 [Clostridium kluyveri DSM 555] gi|146346747|gb|EDK33283.1| XerD [Clostridium kluyveri DSM 555] Length = 292 Score = 120 bits (300), Expect = 4e-25, Method: Composition-based stats. Identities = 41/277 (14%), Positives = 101/277 (36%), Gaps = 22/277 (7%) Query: 78 YRKSAHWGSLAVNSRISFESYFDQ----IIRKSGD-FDYRKITTKHIRSGVESRKHTPSS 132 Y + ++ N+ ++ ++ I ++ G+ + ++ ++ SS Sbjct: 8 YAEQLEKKHMSKNTLDAYIRDINRFYNFIKKREGNLKEVEVVSIMAYVQYLQKEGKAISS 67 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----E 188 ++ + S+R +K+ + + + NP L E PK K + T +++ + + Sbjct: 68 IVRNIVSLRNFYKYLMVKGVINENPLLYYEIPKVKHNIPKVLTVDEVDKLLDSPDSTTYK 127 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ--KTGTIITVELP----DGFM 242 G + + E + +G++ + + + I+ + K + V + Sbjct: 128 GIRDKAMLEIMYAAGMKVMELLTLTIYDIDLKFSYIRCKSLKNKERL-VPIGSVAVQYLK 186 Query: 243 KLLAMTPIGK----ETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATI 296 L + P +T F+N M+ F K A ++ ++K A +R A Sbjct: 187 NYLDIRPQLNIYNLDTLFLNLRGAAMSRQGFWKIVKYYAKESKIDKDINAFTLRHSFAVH 246 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 GA + G K + + Y+ + ++ Sbjct: 247 LLQNGADIKSVQELLGHKDLSATQIYSAVLKKNKIAE 283 >gi|317508798|ref|ZP_07966443.1| tyrosine recombinase XerD [Segniliparus rugosus ATCC BAA-974] gi|316252907|gb|EFV12332.1| tyrosine recombinase XerD [Segniliparus rugosus ATCC BAA-974] Length = 340 Score = 120 bits (300), Expect = 4e-25, Method: Composition-based stats. Identities = 52/280 (18%), Positives = 92/280 (32%), Gaps = 47/280 (16%) Query: 90 NSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV------ESRKHTPSSAIQFLTSMRVL 143 + R + Y D + +S D ++T+ I + E SSA + L+++R L Sbjct: 44 SYRRDLDRYMDFLRERSA-TDLAQVTSAQIAEFLAWSRDPEGMGLAQSSAARGLSAVRGL 102 Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF---------KSFWSEGSQPRL 194 K+AV + A + V+ P+ + + + +S + Sbjct: 103 HKFAVLEGMAAQDAAHGVKPPQPGRRLPKALPVDQVIAIIEASGMADSESDIPRALRDAA 162 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAM------ 247 E + +G R S++ + + S + K V L + L Sbjct: 163 LLELMYCTGCRVSEAVGLNLLDVDFQARSARVLGKGDKERLVPLGGPAVAALDAYLVRGR 222 Query: 248 --------------------TPIGKET--FFINNDKQKMNATQFSIWFKAKATKAGVNK- 284 P GK T F+N ++ + + A KAGV Sbjct: 223 PALLAARIPRGSASRSYSREAPPGKATNALFLNARGERFSRQSTWASLRHAAAKAGVKAE 282 Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 S H +R AT + GA + G +V + YT Sbjct: 283 ISPHTLRHSCATHLLEGGADVRVVQELLGHASVVTTQIYT 322 >gi|307246735|ref|ZP_07528805.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307255720|ref|ZP_07537524.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307260172|ref|ZP_07541882.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306852435|gb|EFM84670.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306861397|gb|EFM93387.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306865818|gb|EFM97696.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 336 Score = 120 bits (300), Expect = 4e-25, Method: Composition-based stats. Identities = 36/259 (13%), Positives = 89/259 (34%), Gaps = 19/259 (7%) Query: 85 GSLAVNSRISFESYFDQIIR---KSGDFDYRKITTKHIRSGV---ESRKHTPSSAIQFLT 138 + ++ +++ + ++G ++++ + +R + + S L Sbjct: 53 KQASQHTLSNYQRQLLAVSDMLSQAGISTWQEVNSATVRWIIAQSNKQGLGAKSIALRLV 112 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS---FWSEGSQPRLA 195 ++R F + +RQE +++NP + ++ PK + E +Q + + Sbjct: 113 ALRQWFSYLIRQEKMSVNPAVGIKAPKASKRLPKNIDAEQAEQLLTSDSHEPSDLRDLAM 172 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMT------ 248 E + SGLR S+ + + ++ K V + ++ L Sbjct: 173 MELMYSSGLRLSELQGLDLGDMDLAGREVRLLGKGNKERIVPIGSKALEALNRWLAVRNQ 232 Query: 249 -PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAH 305 F+N +++ + + K G+ + H +R AT +A Sbjct: 233 FKPQDNAVFLNKRGGRLSHRSIQLVMQKWGEKQGLESHLHPHKLRHSFATHMLEASGDLR 292 Query: 306 ELMATYGWKTVDQAETYTK 324 + G + + YT Sbjct: 293 AVQELLGHSNLATTQIYTH 311 >gi|260752898|ref|YP_003225791.1| integrase family protein [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258552261|gb|ACV75207.1| integrase family protein [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 307 Score = 120 bits (300), Expect = 4e-25, Method: Composition-based stats. Identities = 45/281 (16%), Positives = 97/281 (34%), Gaps = 17/281 (6%) Query: 74 LISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132 LI + + A + N+ +++ S ++ + + T GV + ++ Sbjct: 16 LILRFLEMMAAESGSSPNTLMAYGSDLRLASQQLENGLVKADTDDLASLGVVWSDYARNT 75 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF---------K 183 + +++ +++ + + +P S+ + T ++++ + Sbjct: 76 VARKSAALKHFYRFLLEEGMRTDDPSSSLPHAGISRNLPKILTTAEVERLFVTLQQRYDR 135 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIITVELPDGFM 242 + + E L SGLR S+ Q F I K G V + D Sbjct: 136 AATPSTLRLMALVELLYGSGLRASELVSLPKQAFIRKQPFLILKGKGGRERLVPISDRAT 195 Query: 243 KLLAMTPI---GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKFSATI 296 +A + K + + K ++ + K A +A + + S H +R AT Sbjct: 196 DAVAAWLVHVPEKSLWLFPSGKGHISRIRLYQLIKELAVEADLPRERVSPHVLRHAFATH 255 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 + GA L G + + YT + + + NSR Sbjct: 256 LLEGGADLRVLQLLLGHADISTTQIYTHVDSQKLVELVNSR 296 >gi|237718824|ref|ZP_04549305.1| site-specific recombinase [Bacteroides sp. 2_2_4] gi|229451956|gb|EEO57747.1| site-specific recombinase [Bacteroides sp. 2_2_4] Length = 393 Score = 120 bits (300), Expect = 4e-25, Method: Composition-based stats. Identities = 55/294 (18%), Positives = 118/294 (40%), Gaps = 27/294 (9%) Query: 62 NSPRKKPTTLKWLISEYRK-SAHWGSLAVNSRISFESYFDQIIRKSGDFDY--RKITTKH 118 + +K TL + ++ K +A ++ ++ + + DQ + G ++ + + + Sbjct: 86 DKVKKSRMTLTKWMDDFVKYNAELSESSMKTKRNTHARIDQYLLYIGKPEFLLKDVDKEF 145 Query: 119 IRSGVESRKH-TPSSAIQFLTSM--RVLFKW-------AVRQEYVAINPCLSVE---RPK 165 + + K T + + L++ R+ + A+R + NP L +E +P+ Sbjct: 146 CKGFITFLKTCTYNDGKKQLSTTTCRMFVNYFGSSLAKAIRDGLIEQNPFLLLEAKEKPQ 205 Query: 166 RKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL------QN 219 ++ T E++++ + + AF F ++GLR SD + + Sbjct: 206 KRVAEREFLTIEEIKKVMNTPCRYELVKKAFLFSCFTGLRYSDMKTLNWSEIHKAADGKT 265 Query: 220 NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK 279 KT +T+ L + K + G + F N + +T + K Sbjct: 266 EYIDHIQVKTKDRVTIPLSEETKKWMPKREEGIDNIFHNLT---ITSTTVEVVLKEWMEV 322 Query: 280 AGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 AG++K + H R +AT+ GA+ + + G K++ E Y K D+ +L Sbjct: 323 AGISKHITYHCSRHTAATMFLTLGASIYVVSKILGHKSIKMTEIYAKIVDKKKL 376 >gi|90414248|ref|ZP_01222228.1| tyrosine recombinase [Photobacterium profundum 3TCK] gi|90324695|gb|EAS41236.1| tyrosine recombinase [Photobacterium profundum 3TCK] Length = 304 Score = 120 bits (300), Expect = 4e-25, Method: Composition-based stats. Identities = 39/272 (14%), Positives = 91/272 (33%), Gaps = 22/272 (8%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV------ESR 126 L EY +S L+++++ +++ I + F+ T Sbjct: 13 QLFYEYIRSER--ELSLHTQQNYKRQLSTIAEQLVSFEVTDWTMVDAGWVRQIASKGMRD 70 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF- 185 SS L+++R F + V+++ + NP V P++ + ++M Q S Sbjct: 71 GLKASSISMRLSALRSFFDFLVQKDILKANPAKGVAAPRKARPLPKNLDVDEMDQLLSVN 130 Query: 186 --WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-------- 235 + R E + +GLR ++ V+ + + I+ G + Sbjct: 131 EDDPLSIRDRAMMELMYGAGLRLAELVSLNVRDISLSKGDIRVIGKGDKERIVPFAGLAR 190 Query: 236 -ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKF 292 + + ++ + F++ +++ K V + + H +R Sbjct: 191 EWVANWLKVRGSLASGDESGLFVSKLGTRISTRNVQKRMAEWGQKQAVSSHINPHKLRHS 250 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTK 324 AT ++ + G + + YT Sbjct: 251 FATHMLESSGDLRAVQELLGHANLSTTQIYTH 282 >gi|94266129|ref|ZP_01289843.1| Phage integrase [delta proteobacterium MLMS-1] gi|93453304|gb|EAT03747.1| Phage integrase [delta proteobacterium MLMS-1] Length = 465 Score = 120 bits (300), Expect = 4e-25, Method: Composition-based stats. Identities = 63/349 (18%), Positives = 130/349 (37%), Gaps = 28/349 (8%) Query: 10 FVTKERTRHGKIIY-YFRKGHG--RRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66 F+ + R+ GK + +R GHG R+ ++ + +F A +A T + P Sbjct: 119 FILEVRSTGGKTYHLRYRDGHGKLRQHKIGGADDISFDKA-QAAATRLRSRVVLGEDPLA 177 Query: 67 KPTTLKWL--ISEYRKSAHWGSLAVNSRISFESYF----DQIIRKSGDFDYRKITTKHIR 120 + T K + + E+ + + S++S F + ++ G+ +I + Sbjct: 178 ERQTKKQVPTLEEFAAE-KYMPYVKGYKRSWKSDFGYLKNHLLPLFGNQHLDQIKQAEVI 236 Query: 121 SGVESRKHTP---SSAIQFLTSMRVLFKWAVRQEY--VAINPCLSVERPKRKTEGIRPWT 175 K ++ + + +R +F A + + NP V + R T Sbjct: 237 ELHHGMKARGYALATCNRQVILLRYIFNLARKWKIPGADNNPTTGVALFEANNGRERYLT 296 Query: 176 KEDMQQFKSFW--SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGT 231 +++ + K+ SE +Q + LL G R S+ + + S + K+G Sbjct: 297 EDEAARLKAALESSENTQLKYIVSLLLLLGCRKSELLNSRWEDFDLARRSWRIPLSKSGK 356 Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAK---ATKAGV-NKSAH 287 V L +++LA P N F F++ KAG+ + H Sbjct: 357 ARYVPLSTAALEVLASIPRLSPYVVPN----PKTLQPFVSVFRSWDTARKKAGLPDVRMH 412 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336 +R A+ ++G + +E+ G + + Y+ ++ L +S Sbjct: 413 DLRHSFASFLVNSGRSIYEVSQLLGHSQLKTTQRYSHLSNDTLLAAVDS 461 >gi|309809264|ref|ZP_07703133.1| putative tyrosine recombinase XerC [Lactobacillus iners SPIN 2503V10-D] gi|308170377|gb|EFO72401.1| putative tyrosine recombinase XerC [Lactobacillus iners SPIN 2503V10-D] Length = 307 Score = 120 bits (300), Expect = 4e-25, Method: Composition-based stats. Identities = 36/279 (12%), Positives = 95/279 (34%), Gaps = 26/279 (9%) Query: 72 KWLISEYRKS-AHWGSLAVNSRISFESYFDQ----IIRKSGDFDYRKITTKHIR---SGV 123 + Y + + ++N+ ++ + + G D+ K++++ I + Sbjct: 5 DDFLKLYYNYLKNERNYSINTCKAYMDDLSEARTFFVENGGFIDWIKLSSRDIEIFIQYL 64 Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 +K S+ + ++++R +++ ++ + +NP + + ++M + Sbjct: 65 AQKKDKRSTQSRKISTLRSFYRFLNKRNIIPVNPVELISLRGEHKKLPEFLYNDEMVKVL 124 Query: 184 S----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIITVELP 238 G + E +G+R S+ ++ + + + K V Sbjct: 125 KSISTTTPLGLRNMALLELFYATGMRVSEIANLKLEQIDFELNLILVHGKGNKDRYVAFG 184 Query: 239 DGFMKLLAMT-----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS-- 285 + L F+N++ ++ + K AGV+ S Sbjct: 185 EEAKTALNNYLVEARKKILLHKTDYGYVFLNSNGNRITSRGLEYIIKNIFLNAGVSASVH 244 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R AT + GA + G +++ + YT Sbjct: 245 PHMLRHTFATQMLNNGADLRTVQELLGHESISTTQIYTH 283 >gi|295111500|emb|CBL28250.1| Site-specific recombinase XerD [Synergistetes bacterium SGP1] Length = 308 Score = 120 bits (300), Expect = 4e-25, Method: Composition-based stats. Identities = 41/280 (14%), Positives = 95/280 (33%), Gaps = 29/280 (10%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVES--- 125 LI + S S + ++ +++ S Q G + R + +R+ + + Sbjct: 3 DHLIDAFMASVQNRSQSEHTLVNYASDLRQFAEYLEGCGASEVRSVEAPILRAYLRALFG 62 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + ++ + L+S+R F + + + +P ++ P R ++E +++ + Sbjct: 63 WGYAKATVARKLSSLRSFFAFLKERGVLERDPARNLRGPGAPRRIPRALSEEVVERLFAA 122 Query: 186 W---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVE---LP 238 E + E L GLR S+ + + + + I K V Sbjct: 123 AGESEEALRDTAILEVLYGCGLRVSELTGLRWEDVDLDERWLIILGKGSKERRVPFGRCA 182 Query: 239 DGFMKLLAMTPIGKETFFINNDK---------------QKMNATQFSIWFKAKATKAGVN 283 + L F+ ++ + + A A +AG+ Sbjct: 183 QRALTALRGEQALGPFVFVGHEGAGSPGREGRRGRTGQKPVTVRTVHRVVTALAARAGLE 242 Query: 284 K-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 + H +R AT + GA+ + G +++ + Y Sbjct: 243 GVTPHVLRHSCATHLLEHGASLKFVQEFLGHESLATTQIY 282 >gi|291612618|ref|YP_003522775.1| tyrosine recombinase XerC [Sideroxydans lithotrophicus ES-1] gi|291582730|gb|ADE10388.1| tyrosine recombinase XerC [Sideroxydans lithotrophicus ES-1] Length = 299 Score = 120 bits (300), Expect = 4e-25, Method: Composition-based stats. Identities = 37/281 (13%), Positives = 92/281 (32%), Gaps = 20/281 (7%) Query: 61 INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120 + + + P TL+ + Y + + + + ++ ++ +G + + HIR Sbjct: 1 MPAAEQVPATLQGYL-AYLNNER--NYSPLTAENYARDIRRLFELAGATPLPDLKSHHIR 57 Query: 121 SGVESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177 + S + L++ R + + +R NPC+ + PK + + Sbjct: 58 RYIAQLHGSGLGGRSLARVLSAWRGFYGYLMRDHGCKSNPCVGLRAPKAPKTLPHALSPD 117 Query: 178 DMQQFKSFW---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT 234 + + ++ + FE L SGLR ++ + S++ G Sbjct: 118 EAVKLVEMLVATPLDARDKAMFELLYSSGLRLAELVSLDPIDMDFADASVRVTGKGNKTR 177 Query: 235 V---------ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--N 283 + L + G+ F+ + +++ + + + G+ Sbjct: 178 IVPLGSHAIDALKAWLAVRDQIAKPGETALFVGKNGARISPRTVQLQLRQRGITQGIASG 237 Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R AT + + G ++ + YT Sbjct: 238 VHPHLLRHSFATHVLQSSGDLRAVQEMLGHASISTTQVYTH 278 >gi|163792809|ref|ZP_02186786.1| integrase/recombinase XerD [alpha proteobacterium BAL199] gi|159182514|gb|EDP67023.1| integrase/recombinase XerD [alpha proteobacterium BAL199] Length = 314 Score = 119 bits (299), Expect = 5e-25, Method: Composition-based stats. Identities = 53/309 (17%), Positives = 106/309 (34%), Gaps = 26/309 (8%) Query: 63 SPRKKPTTLKWLISEYRKS-AHWGSLAVNSRISFESYFDQ----IIRKSGDFDYRKIT-T 116 + + P I + + A A N+ ++ + + G + + Sbjct: 2 ARQAAPRGWTSAIETFLEMMAAERGAARNTLDAYGRDLMHAELWLNERGGSLETADVDGL 61 Query: 117 KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176 + S E+ P +A + L++ R F++ + A +P +++ P+R + ++ Sbjct: 62 RAYLSAAEAGGVMPRTAARRLSAQRQFFRFLYAEGRRADDPTATLDAPRRGRPLPKILSE 121 Query: 177 EDMQQFKSFW-----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL-QNNIFSIKTQKTG 230 D+ EG + E L +GLR S+ + ++ I K G Sbjct: 122 ADVDALLDAACDRPGPEGLRLICLLEVLYATGLRVSELVGLPFAAVARDPHVLIVRGKGG 181 Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINND----------KQKMNATQFSIWFKAKATKA 280 V L M +A + F + + +F A A Sbjct: 182 KERMVPLTAAAMDAIAAYKAVRGVFLTTKASPHLFPSRSAQGHLTRRRFGQLLDETAILA 241 Query: 281 GVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG-ADRIRLGIKNS 336 G++ S H +R AT D GA + G + + YT A+R+R ++ Sbjct: 242 GIDPAKVSPHVLRHAFATHLLDHGADLRSVQQMLGHADISTTQIYTHVLAERLRALVETH 301 Query: 337 RRISSVVDS 345 ++ + S Sbjct: 302 HPLARSLSS 310 >gi|467161|gb|AAA50925.1| u0247d [Mycobacterium leprae] Length = 316 Score = 119 bits (299), Expect = 5e-25, Method: Composition-based stats. Identities = 48/296 (16%), Positives = 95/296 (32%), Gaps = 42/296 (14%) Query: 70 TLKWLISEYRKSAHW----GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH----IRS 121 T L ++ + + S+A N+ S+ + + D + Sbjct: 2 TTAALQTQLQGYLDYLIIERSIAANTLSSYRRDLIRYSKHLSDRGIEDLAKVGEHDVSEF 61 Query: 122 GVESRKHTPSS---------AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172 V R+ P S A + L ++R L ++AV + V ++ +V P + Sbjct: 62 LVALRRGDPDSGVAALSAVSAARALIAVRGLHRFAVAEGLVDLDVARAVRPPTPGRRLPK 121 Query: 173 PWTKEDMQQFK--------SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFS 223 T +++ + + R E L +G R S++ V + Sbjct: 122 SLTVDEVLALLESVGGESGADGPLVLRNRALLELLYSTGSRISEAVGLDVDDVDTQARTV 181 Query: 224 IKTQKTGTIITVELPDGFMKLLAMTPIGKET--------------FFINNDKQKMNATQF 269 + K G V + ++ L + + F+N +++ Sbjct: 182 LLQGKGGKQRLVPVGRPAVQALDAYLVRGRSDLARRGPGMLATPAIFLNARGGRLSRQSA 241 Query: 270 SIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 + A AG+ S H +R AT + GA + G +V + YT Sbjct: 242 WQVLQDAAEHAGITSGVSPHMLRHSFATHLLEGGADIRVVQELMGHASVTTTQIYT 297 >gi|121634218|ref|YP_974463.1| putative integrase/recombinase [Neisseria meningitidis FAM18] gi|166918892|sp|A1KS31|XERC_NEIMF RecName: Full=Tyrosine recombinase xerC gi|120865924|emb|CAM09661.1| putative integrase/recombinase [Neisseria meningitidis FAM18] Length = 305 Score = 119 bits (299), Expect = 5e-25, Method: Composition-based stats. Identities = 36/278 (12%), Positives = 84/278 (30%), Gaps = 24/278 (8%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD-------YRKITTKHIRSGV 123 Y ++ + ++ ++ +++ + ++ + + + Sbjct: 6 FAAHFDAYLENIVREGKSEHTVAAYRRDLEELFALLAQMPSEDVGGVPQDLSRRDFTAAL 65 Query: 124 ES---RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 R + + L+S R W V + + +P ++ PK+ + +E + Sbjct: 66 RRLSQRGLNARTLARKLSSWRQYCVWLVERGLLHTDPTADIKPPKQPERVPKALPQEWLN 125 Query: 181 QFKSF-----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIIT 234 + + FE + SGLR S+ + + + G Sbjct: 126 RMLDLPVDGGDPLAVRDHALFELMYGSGLRVSEIHGLNADDVYLDEAWVHVTGKGRKQRQ 185 Query: 235 VELP----DGFMKL--LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK--AGVNKSA 286 V L + L T + F + +++ Q A + G + S Sbjct: 186 VPLTGKSVEALKNYLPLRQTASDGKALFTGRNGTRLSQRQIQKRLAQWAAQNGDGRHVSP 245 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R A A + G ++ + YTK Sbjct: 246 HMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTK 283 >gi|119719024|ref|YP_919519.1| phage integrase family protein [Thermofilum pendens Hrk 5] gi|119524144|gb|ABL77516.1| phage integrase family protein [Thermofilum pendens Hrk 5] Length = 295 Score = 119 bits (299), Expect = 5e-25, Method: Composition-based stats. Identities = 58/276 (21%), Positives = 105/276 (38%), Gaps = 9/276 (3%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133 LI Y + + + SF+S ++ +R GD ++T + + + Sbjct: 16 LIDLYISHLVARNRSEKTIKSFKSILEEFVRFLGDRHVSQVTVYDVDFFLAHLRRKGWKK 75 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193 T+ + ++ N E PKR+ R E++ + + +E + + Sbjct: 76 DSIYTAAVAVKRFLEFLGL-GGNIA-GFELPKREKRLPRYLEAEEVFRMVN-AAENLRDK 132 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-IITVELPDGFMKLLA--MTPI 250 L L +GLR S+ V + +++ + G+ V PD LL M + Sbjct: 133 LIVLLLFTTGLRVSELVSLRVSDVDLEKRTLRVRGKGSKERLVYFPDYVADLLRSYMKGL 192 Query: 251 GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELM 308 E F + + ++ T K KAG+ K + H +R AT+S AG E+ Sbjct: 193 NSEWLFPSETAEHIHYTTVERVLKRLKEKAGIEKKVTPHTLRHSFATLSLAAGLDIREIQ 252 Query: 309 ATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344 G ++ + Y R RL R SS++D Sbjct: 253 ELLGHSNLNTTQVYAH-VSRERLKRDYERVWSSLLD 287 >gi|116629573|ref|YP_814745.1| integrase [Lactobacillus gasseri ATCC 33323] gi|282852048|ref|ZP_06261406.1| tyrosine recombinase XerC [Lactobacillus gasseri 224-1] gi|116095155|gb|ABJ60307.1| tyrosine recombinase XerC subunit [Lactobacillus gasseri ATCC 33323] gi|282556808|gb|EFB62412.1| tyrosine recombinase XerC [Lactobacillus gasseri 224-1] Length = 307 Score = 119 bits (299), Expect = 5e-25, Method: Composition-based stats. Identities = 43/279 (15%), Positives = 105/279 (37%), Gaps = 26/279 (9%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQ----IIRKSGDFDYRKITTKHIRSGVESR 126 LI +++ ++ + + N+ S+ + D+ G + K+ ++ + ++S Sbjct: 6 DKLIKQFQDYLNYERNYSKNTVSSYLNDLDEAKQFFKENGGFGGWDKVKSRDVEIFLQSL 65 Query: 127 KH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 + ++ + ++S+R +++ V++E + +P ++ + + + + +++M+Q Sbjct: 66 AAQNRSRTTQARKMSSLRSFYRFLVKREVLENDPMQTISLRLGEKKLPQFFYEKEMRQVF 125 Query: 184 SFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVEL- 237 + + R FE +G+R S+ + + + + K V Sbjct: 126 DSLAGHDKLVVRNRAMFELFYATGMRLSEMASLKLDQIDFDLKIILVHGKGNKDRYVPFG 185 Query: 238 ---PDGFMK-------LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS-- 285 D + L F+NN QK+ + KAGV Sbjct: 186 KDALDALREYRDDVRLALLGQNEDLGYVFLNNRGQKLTGRGIEYIMQQVFIKAGVGGKVH 245 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R AT + GA + G +++ + YT Sbjct: 246 PHMLRHSFATEMLNNGADLRSVQELLGHESLSTTQIYTH 284 >gi|218778262|ref|YP_002429580.1| tyrosine recombinase XerC [Desulfatibacillum alkenivorans AK-01] gi|218759646|gb|ACL02112.1| tyrosine recombinase XerC [Desulfatibacillum alkenivorans AK-01] Length = 315 Score = 119 bits (299), Expect = 5e-25, Method: Composition-based stats. Identities = 46/284 (16%), Positives = 94/284 (33%), Gaps = 35/284 (12%) Query: 74 LISEYRKS-AHWGSLAVNSRISFESYFDQII--------------RKSGDFDYRKITTKH 118 I + +S A + + +++ + + + + Sbjct: 14 WIDSFLESLAAERRYSPATCLAYGKDLREFFSYVAESGLQGEISPENADVERVDNLAIRG 73 Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 + + + A + L+S+R +++ ++ VA+NP SV PKRK T ++ Sbjct: 74 YLGFLHKKNEKSTMARK-LSSLRSFYRFLEKRGRVAVNPAQSVVTPKRKKTVAAHLTVDE 132 Query: 179 ----MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDS--CRAGVQHLQNNIFSIKTQKTGTI 232 + G++ R FE L +G+R S+ G + + K Sbjct: 133 AFALLDSILDDSLAGARDRAMFECLYSTGIRVSELAGLNMGRVNFSGKTLRV-LGKGDKE 191 Query: 233 ITVELPDGFMKLLAMTP----------IGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282 V + ++ + E F+N + ++ + G+ Sbjct: 192 RIVPVGAKALEHIKAYRDRLAVEGPKNPDPEAVFLNKNGGRLTTRSIRRILEKIVRDMGL 251 Query: 283 NK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 N+ S HG+R AT D GA + G ++ YT Sbjct: 252 NRPLSPHGLRHTFATHMLDNGADLRSVQELLGHASISTTGRYTH 295 >gi|163747117|ref|ZP_02154473.1| tyrosine recombinase XerD [Oceanibulbus indolifex HEL-45] gi|161379678|gb|EDQ04091.1| tyrosine recombinase XerD [Oceanibulbus indolifex HEL-45] Length = 327 Score = 119 bits (299), Expect = 5e-25, Method: Composition-based stats. Identities = 47/305 (15%), Positives = 96/305 (31%), Gaps = 33/305 (10%) Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI-----IRKSGDFDYRKITTKHIR 120 T W+ S +A A N+++++ + + + Sbjct: 4 SHTQTFHWISSFLEAAAAEQGAATNTQLAYGRDLKDFDAFLARQNHDFLTASRGEVEDYL 63 Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 +++ S+ + L++++ L+++A + NP + + P + + ++E++ Sbjct: 64 VYCDAQGLAKSTRARRLSAIKQLYRFAFEEGLREDNPAVQIAGPGQDRRLPKILSEEEVD 123 Query: 181 QFKSFWSEGSQPRLA-------FEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTI 232 + + E L +G+R S+ V + + + + K G Sbjct: 124 RLLDAARNSGRALADQLRNTCLMELLYATGMRVSELVSLPVSAARGDPRLLLISGKGGRE 183 Query: 233 ITVELPDGFMKLLAM----------------TPIGKETFFINNDKQKMNATQFSIWFKAK 276 V L + LA P + F + +F + K Sbjct: 184 RLVPLSEPARDALAAWLVVRDKADEAAQAKGKPPARHLFPSRGVMGHLTRHRFYLLIKEF 243 Query: 277 ATKAGV---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 A GV + H +R AT GA + G V E YT + RL Sbjct: 244 AVTGGVPPEKVTPHTLRHAFATHLLANGADLRAIQTMLGHADVATTEIYTHVLEE-RLSD 302 Query: 334 KNSRR 338 R Sbjct: 303 LVLER 307 >gi|54288326|gb|AAV31614.1| predicted site-specific recombinase [uncultured alpha proteobacterium EBAC2C11] Length = 315 Score = 119 bits (299), Expect = 5e-25, Method: Composition-based stats. Identities = 51/302 (16%), Positives = 97/302 (32%), Gaps = 38/302 (12%) Query: 74 LISEYRKS-AHWGSLAVNSRISFESYF-------DQIIRKSGDFDYRKITTKHIRSGVES 125 LI + ++ + + +VN+ ++ + + + D + + + Sbjct: 17 LIDGFLQAISAMKAASVNTLSAYRRDLLDCQIGLETRAKTLTNCDMDDL--RGVIFWWHQ 74 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 R P S + L+++R WAV NP ++ P + ++ ++ Q Sbjct: 75 RDLKPRSVARRLSALRQFMGWAVEDGVRQDNPTTWLDNPSLPMSAPKSLSEVEIIQLLKM 134 Query: 186 WS------EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELP 238 + E L +GLR S+ V + N +I K G V L Sbjct: 135 AKTLEPESASLRALAMLEILYATGLRVSELVSLLVVQFRRNPQTILVKGKGGRERLVPLG 194 Query: 239 DGFM---------KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK---SA 286 + + + + F M+ Q + K A A + S Sbjct: 195 ETARLAAVRWIECRDSNPAFVQSDYMFPVRGGGPMSRHQLARLLKKLAVAADIEVGRVSP 254 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSD 346 H +R AT + GA L + G + + YT R++ +V S Sbjct: 255 HKLRHSFATHMLNRGADLRSLQSLLGHADISTTQIYTSSR---------PERLAGLVTSA 305 Query: 347 DP 348 P Sbjct: 306 HP 307 >gi|241761139|ref|ZP_04759228.1| integrase family protein [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|241374758|gb|EER64219.1| integrase family protein [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 307 Score = 119 bits (299), Expect = 5e-25, Method: Composition-based stats. Identities = 48/281 (17%), Positives = 98/281 (34%), Gaps = 17/281 (6%) Query: 74 LISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132 LI + + A + N+ +++ S ++ + + T GV + ++ Sbjct: 16 LILRFLEMMAAESGSSPNTLMAYGSDLRLASQQLENGLVKADTDDLASLGVVWSDYARNT 75 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF-------KSF 185 + +++ +++ + + +P S+ + T ++++ Sbjct: 76 VARKSAALKHFYRFLLEEGMRTDDPSSSLPHAGISRNLPKILTTAEVERLFVTLQQRYER 135 Query: 186 WSEGSQPRLA--FEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIITVELPDGFM 242 + S RL E L SGLR S+ Q F I K G V + D Sbjct: 136 AATPSTLRLMALVELLYGSGLRASELVSLPKQAFIRKQPFLILKGKGGRERLVPISDRAT 195 Query: 243 KLLAMTPI---GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKFSATI 296 +A + K + + K ++ + K A +A + + S H +R AT Sbjct: 196 DAVAAWLVHVPEKSLWLFPSGKGHISRIRLYQLIKELAVEADLPRERVSPHVLRHAFATH 255 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 + GA L G + + YT + + + NSR Sbjct: 256 LLEGGADLRVLQLLLGHADISTTQIYTHVDSQKLVELVNSR 296 >gi|116491053|ref|YP_810597.1| tyrosine recombinase XerC subunit [Oenococcus oeni PSU-1] gi|118586889|ref|ZP_01544323.1| integrase/recombinase [Oenococcus oeni ATCC BAA-1163] gi|290890534|ref|ZP_06553609.1| hypothetical protein AWRIB429_0999 [Oenococcus oeni AWRIB429] gi|116091778|gb|ABJ56932.1| tyrosine recombinase XerC subunit [Oenococcus oeni PSU-1] gi|118432721|gb|EAV39453.1| integrase/recombinase [Oenococcus oeni ATCC BAA-1163] gi|290479930|gb|EFD88579.1| hypothetical protein AWRIB429_0999 [Oenococcus oeni AWRIB429] Length = 307 Score = 119 bits (299), Expect = 5e-25, Method: Composition-based stats. Identities = 37/275 (13%), Positives = 85/275 (30%), Gaps = 28/275 (10%) Query: 76 SEYRKSAHWGSLAVNSRISFESYF----DQIIRKSGDFDYRKITTKHIRSGVE---SRKH 128 EY + + + ++ + + G D+ I +R + RK Sbjct: 12 EEYLQ--AERQYSTLTLKAYREDIGEFVNFFSQNGGFKDFSAIDRFDVRIYLNNLYERKL 69 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 +S + ++S+R + + + NP ++E + ++ ++ ++ Sbjct: 70 AKTSIARKISSLRSFYHFLIENSLAKKNPFANIEFRSSNKKLPEFLYPAEVIEYLRAAAD 129 Query: 189 GS-----QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVEL----- 237 + E L +G+R + + N+ T K + Sbjct: 130 PQNDQYLRNSALIELLYATGMRIFEITNLTFSQIDFNSQIVDITGKGKKQRIIPFGKPAL 189 Query: 238 ------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGV 289 K + FIN +++ T K + ++ + N H + Sbjct: 190 ASLKQYLPWREKTMQKFSEKHSYIFINTRGRQLTETGAEYILKQVSKRSKLTANIHPHML 249 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 R AT + GA + G ++ + YT Sbjct: 250 RHSFATHLLNNGADIRTVQELLGHASLSTTQIYTH 284 >gi|237745687|ref|ZP_04576167.1| phage integrase [Oxalobacter formigenes HOxBLS] gi|229377038|gb|EEO27129.1| phage integrase [Oxalobacter formigenes HOxBLS] Length = 348 Score = 119 bits (299), Expect = 5e-25, Method: Composition-based stats. Identities = 54/323 (16%), Positives = 110/323 (34%), Gaps = 26/323 (8%) Query: 16 TRHGKIIYYFRKGHGRRIRLPYPHESTF---IPAYMSALTGSTPKREYINSPRKKP---T 69 R ++ + R+ + Y + + E +N ++ Sbjct: 5 KRKDSSYWWIKITSPGGKRIQQSTGTEDKMKAQEYHDKIKAALWDEEKLNKKPQRTWQEA 64 Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK--HIRSGVESRK 127 T++WL S + ++ + G+ +I+ + + ++ Sbjct: 65 TVRWLNE---TSDKRTTREDITK------LRWLHPILGNLTLDQISLPVIDMIRERKLKE 115 Query: 128 HTPSSAIQFLTSMRVLFKWAV-RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + ++ ++L +R + A E++ P ++ K R T E + + Sbjct: 116 ASKATVNRYLNLVRAILNRAKNEWEWIDGFP--KIKMYKESNNRNRSLTPEQADKLLAEL 173 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS--IKTQKTGTIITVELPDGFMKL 244 E R F LY+GLR + +H+ + + K G + V L D M + Sbjct: 174 PE--HQRDIVLFALYTGLRQRNVLDMEWEHVDLELRHAYVPRTKNGEALAVPLNDVAMSI 231 Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGAT 303 + F + + + ++ ++ +AG+ + H +R AT AG Sbjct: 232 ITKQIGKHPQFVFSYRGKHIRYAN-TLAWRKALVRAGITDFRWHDLRHTWATWQRKAGTP 290 Query: 304 AHELMATYGWKTVDQAETYTKGA 326 HEL GWKT E Y A Sbjct: 291 THELQHLGGWKTRAMVERYAHIA 313 >gi|183221814|ref|YP_001839810.1| tyrosine recombinase XerC [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189911886|ref|YP_001963441.1| tyrosine site-specific recombinase XerC [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167776562|gb|ABZ94863.1| Tyrosine site-specific recombinase XerC [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167780236|gb|ABZ98534.1| Tyrosine recombinase XerC [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 311 Score = 119 bits (299), Expect = 5e-25, Method: Composition-based stats. Identities = 54/293 (18%), Positives = 100/293 (34%), Gaps = 22/293 (7%) Query: 60 YINSPRKKPTTLKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIR--KSGDFDYRKITT 116 + P P + L YR + + ++ ++ + D + Sbjct: 7 EVQIPEHFPQVMADLFRSYRTYLKIEKNYSEHTLFAYLRDLKFFFEFCLKEEIDILSVDV 66 Query: 117 KHIRSGVESRKHTP----SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172 +R+ K + + + L+S+R +K+ R+E + NP L V PK K + Sbjct: 67 LDVRAYFADLKSSKKQDKRTQSRKLSSLRTFYKFLFREEKIGANPILQVSFPKTKKRLPK 126 Query: 173 PWTKEDMQQFKSFWS------EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226 +T + + + G + + E L +GLR + A + L + S+K Sbjct: 127 NFTPIETEDILDYEDPEKKEVLGKRDKAIVEVLYSTGLRVFELVNAKLSDLNEELTSLKV 186 Query: 227 -QKTGTIITVELPDG----FMKLLAMTPIGK-ETFFINNDKQKMNATQFSIWFKAKATKA 280 K V + + L G E F+N K+ + + Sbjct: 187 MGKRRKERFVFIGPEAKVALQEYLDERGNGGPEEIFLNQRGGKLTTRGIRYILSERRSVM 246 Query: 281 GVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 G+ K + H R AT +AGA + G ++ + Y R RL Sbjct: 247 GMEKAITPHKFRHTFATDLLNAGADIRAVQELLGHSSLSSTQVYL-SVSRDRL 298 >gi|37678273|ref|NP_932882.1| site-specific tyrosine recombinase XerC [Vibrio vulnificus YJ016] gi|37197012|dbj|BAC92853.1| site-specific recombinase XerC [Vibrio vulnificus YJ016] Length = 322 Score = 119 bits (299), Expect = 5e-25, Method: Composition-based stats. Identities = 34/280 (12%), Positives = 86/280 (30%), Gaps = 22/280 (7%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV------ESRK 127 + ++ + L+++++ +++ + + + Sbjct: 23 LDQFYEYLRAEKGLSLHTQRNYKQQLETMAEHLHSMGLKAWPQVDAGWVRQLAGKGMREG 82 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-- 185 SS L+S+R F + + + + NP V P++K + +++ Q Sbjct: 83 MKASSIATRLSSLRSFFDFLILRGILTANPAKGVSAPRKKRPLPKNLDVDEVNQLLEVNE 142 Query: 186 -WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE------- 236 + R E + +GLR ++ V+ + I+ K V Sbjct: 143 DDPLAIRDRAIMELMYGAGLRLAELVDIDVRDVHLRSGEIRVIGKGNKERKVPFAGMAVE 202 Query: 237 -LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFS 293 + + + F++ +++ K V + + H +R Sbjct: 203 WVGKWLKVRSGLADPSEPALFVSKLGTRISHRSVQKRMAEWGQKQAVASHITPHKLRHSF 262 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 AT ++ + G + + + YT D L Sbjct: 263 ATHILESSNNLRAVQELLGHENISTTQIYTH-LDFQHLAD 301 >gi|23099003|ref|NP_692469.1| site-specific tyrosine recombinase XerC [Oceanobacillus iheyensis HTE831] gi|34222801|sp|Q7ZAM5|XERC_OCEIH RecName: Full=Tyrosine recombinase xerC gi|22777231|dbj|BAC13504.1| integrase:recombinase [Oceanobacillus iheyensis HTE831] Length = 305 Score = 119 bits (299), Expect = 5e-25, Method: Composition-based stats. Identities = 44/265 (16%), Positives = 97/265 (36%), Gaps = 25/265 (9%) Query: 85 GSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIR---SGVESRKHTPSSAIQFLT 138 + + + + + + +R G +T K +R + + ++ + S + ++ Sbjct: 19 KNASPYTVKYYRNDLEIFADFLRSEGLSHIANVTYKDVRIFLTSLYEQELSRRSVSRKIS 78 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRL 194 ++R +++ R+ YV NP + + PK +E++ + G + + Sbjct: 79 TLRSFYRFLEREGYVEGNPFVQLHLPKTSKPVPGFLYQEELDKLFEVNDITTPLGQRDQA 138 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVE------------LPDGF 241 E L +G+R S+ +Q + I +I + G V L +G Sbjct: 139 LLEMLYGTGIRVSECQNLRLQDIDFAIGTIFVRGKGRKERYVPFGSFAEIALETYLQEGR 198 Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISAD 299 KLL + E F+N+ + +A + + H +R AT + Sbjct: 199 TKLLEKSNSDTEFIFLNSRGGHLTNRGIRTILNKIVERASLTVHVHPHKLRHTFATHLLN 258 Query: 300 AGATAHELMATYGWKTVDQAETYTK 324 GA + G +++ + YT Sbjct: 259 EGADLRSVQELLGHESLSSTQIYTH 283 >gi|126462249|ref|YP_001043363.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17029] gi|126103913|gb|ABN76591.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17029] Length = 311 Score = 119 bits (299), Expect = 5e-25, Method: Composition-based stats. Identities = 54/287 (18%), Positives = 103/287 (35%), Gaps = 33/287 (11%) Query: 74 LISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGV---ESRK 127 IS + ++ A A N+R+++ G D+ T + + + E++ Sbjct: 9 WISAFLEAQAAELDAARNTRLAYGRDLKDYATWLGRRSEDFLTATRDTVEAYLTFCEAQG 68 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ-QFKSFW 186 + ++ + L+S+R L+++A + + A NP + + P R + E++ ++ Sbjct: 69 LSSATRARRLSSIRQLYRFAHEEGWRADNPAIRISGPGRSKRLPKTLEIEEVDWLLEAAR 128 Query: 187 SEGSQP------RLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPD 239 +G + R E L +G+R S+ V + + + K G V L Sbjct: 129 DKGRRAEDQIRNRCLLELLYATGMRVSEMVGLPVAAARGSPRMILVRGKGGKERMVPLSP 188 Query: 240 GFMKLLA----------------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283 + LA P + F + + F + K A AGV+ Sbjct: 189 PACEALADWLRARDAAEAQGQKAGRPASRFLFPGSGAAGHLTREYFYVLVKQIAVLAGVD 248 Query: 284 ---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 + H +R AT GA + G + E YT D Sbjct: 249 PAKVTPHTLRHAFATHLLAGGADLRVIQTLLGHADLSTTEIYTHVLD 295 >gi|325290382|ref|YP_004266563.1| Tyrosine recombinase xerC [Syntrophobotulus glycolicus DSM 8271] gi|324965783|gb|ADY56562.1| Tyrosine recombinase xerC [Syntrophobotulus glycolicus DSM 8271] Length = 300 Score = 119 bits (299), Expect = 5e-25, Method: Composition-based stats. Identities = 50/274 (18%), Positives = 95/274 (34%), Gaps = 24/274 (8%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIR-----------KSGDFDYRKITTKHIRSGV 123 I + +L++++ +++S Q + KI + + Sbjct: 7 IDRFASYQKARNLSLHTISAYQSDLVQFTEFAAAELGVEFAEVELDLVDKIIVRTYIFQL 66 Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 + + + + L ++R F++ R+ V +P L + PK R E M++ Sbjct: 67 ADKGLSRRTVARKLAAIRAFFRYLSREGIVKQSPMLKINTPKLGQTLPRFLYPEHMEKLL 126 Query: 184 SFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELP 238 + + G + +L E L SGLR S+ ++ L ++ K G V L Sbjct: 127 AVLDDSSEMGQRDKLIIELLYGSGLRVSELVGINIEDLDLESAFVRIRGKGGKERIVPLT 186 Query: 239 D----GFMKLLAMTPIGK--ETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVR 290 + + L + E N +M+ KA +N+ H +R Sbjct: 187 EPAVLELRRYLDRWGRSQHQEALIRNYQGTRMSTRSVRRILDKLEKKANLNQHIYPHMLR 246 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK 324 AT D GA + G K + + YT Sbjct: 247 HTFATHLLDGGADLRSVQELLGHKKLSSTQIYTH 280 >gi|301063905|ref|ZP_07204380.1| tyrosine recombinase XerC [delta proteobacterium NaphS2] gi|300441980|gb|EFK06270.1| tyrosine recombinase XerC [delta proteobacterium NaphS2] Length = 329 Score = 119 bits (299), Expect = 5e-25, Method: Composition-based stats. Identities = 47/274 (17%), Positives = 93/274 (33%), Gaps = 34/274 (12%) Query: 85 GSLAVNSRISFESYFDQ------------IIRKSGDFDYRKITTKHIRSGVESR--KHTP 130 + +++ ++ +Q + DF +I +K IR V S K Sbjct: 38 KGYSKHTQRNYRVDLEQFASFVAREMALPLKETDLDFSIEEIESKTIRKFVGSLYGKLKR 97 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---- 186 ++ + L+++R F + ++E + NP ++ PK + +++ + Sbjct: 98 TTIARKLSAVRSFFLFLEKEELIKTNPAGELQSPKLEKYIPSHLPVDEVFRLMDLPNRER 157 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLL 245 S G + E L G+R ++ V + + T K V + +K + Sbjct: 158 SLGLRDLAILEVLYSCGIRVAELAGMNVSSIDHDQRLVKVTGKGNKERLVPIGRQALKAV 217 Query: 246 -------------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVR 290 A E +N ++ K A G+ + S H +R Sbjct: 218 KAYLAATDEDRRRAALRGEGEPLIMNFRGGRLTTRSIGRIVKKYAGAGGLTEDISPHSMR 277 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK 324 AT D GA + G K++ + YT Sbjct: 278 HTFATHMLDGGADLRSVQELLGHKSLSTTQKYTH 311 >gi|259906886|ref|YP_002647242.1| site-specific tyrosine recombinase XerC [Erwinia pyrifoliae Ep1/96] gi|224962508|emb|CAX53963.1| Tyrosine recombinase XerC [Erwinia pyrifoliae Ep1/96] gi|283476679|emb|CAY72508.1| Tyrosine recombinase xerC [Erwinia pyrifoliae DSM 12163] gi|310766134|gb|ADP11084.1| site-specific tyrosine recombinase XerC [Erwinia sp. Ejp617] Length = 302 Score = 119 bits (299), Expect = 5e-25, Method: Composition-based stats. Identities = 36/259 (13%), Positives = 76/259 (29%), Gaps = 19/259 (7%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE------SRKHTPSSAIQFLT 138 L+ ++I + II + + P+S L+ Sbjct: 22 RQLSPLTQIGYRRQLSAIIVLLDELKVVEWARLDAALVRALAARSTRSGLKPASLALRLS 81 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQPRLA 195 ++R W V Q + NP V P+ + +++ + + R Sbjct: 82 ALRSFLDWLVSQGAIKANPAKGVATPRAARHLPKNIDVDEVNRLLDIDLNDPLAVRDRAM 141 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMKLLAMT------ 248 E + +GLR S+ + HL K + + + + Sbjct: 142 LEVMYGAGLRLSELVGIDLGHLDLASGEVWVVGKGSKERRLPMGRTAVHWIENWLEMREL 201 Query: 249 -PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAH 305 F++N ++++ F K G+ + H +R AT ++ Sbjct: 202 FEPQDNALFLSNKGKRISTRNVQKRFAEWGVKQGMSSHIHPHKLRHSFATHLLESSGDLR 261 Query: 306 ELMATYGWKTVDQAETYTK 324 + G + + YT Sbjct: 262 AVQELLGHANLTTTQIYTH 280 >gi|319954827|ref|YP_004166094.1| integrase family protein [Cellulophaga algicola DSM 14237] gi|319423487|gb|ADV50596.1| integrase family protein [Cellulophaga algicola DSM 14237] Length = 375 Score = 119 bits (299), Expect = 5e-25, Method: Composition-based stats. Identities = 47/286 (16%), Positives = 100/286 (34%), Gaps = 12/286 (4%) Query: 59 EYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH 118 E S + K K+ EY A N+ ++ S F+ I D + Sbjct: 92 ERYRSRKPKDG-FKYCPEEYLLKLELKRYADNTVRNYVSCFEGFINYYYTIDPIALNEID 150 Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 +R ++ S ++ K+ + N ++ERP+++ + +K++ Sbjct: 151 VRKYLQKLIQEGKS-NSYINMAVNSIKFFYEIVHGMPNRFYAIERPRKERQLPEVISKDE 209 Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG------TI 232 + + + + R L +GLR ++ + + + +K + ++ Sbjct: 210 IVLIMNNTNT-LKHRCIIGLLYSAGLRRAELLNLNITDIDSKRMVVKIKNAKGNKDRISL 268 Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290 ++ + + K F K + T + A +AG+ K + H +R Sbjct: 269 LSPSILKDLQEYYKEYRPKKF-LFEGQSGGKYSPTSVLNLISSAALRAGILKRVTPHMLR 327 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336 AT + G + G + E YT A+R + IK+ Sbjct: 328 HSFATHLLENGTDIRHIQLLLGHSSTKTTEIYTHVANRSFMEIKDL 373 >gi|15617948|ref|NP_224232.1| site-specific tyrosine recombinase XerC [Chlamydophila pneumoniae CWL029] gi|15835561|ref|NP_300085.1| site-specific tyrosine recombinase XerC [Chlamydophila pneumoniae J138] gi|16753021|ref|NP_445294.1| site-specific tyrosine recombinase XerC [Chlamydophila pneumoniae AR39] gi|33241363|ref|NP_876304.1| site-specific tyrosine recombinase XerC [Chlamydophila pneumoniae TW-183] gi|34223089|sp|Q9Z9F7|XERC_CHLPN RecName: Full=Tyrosine recombinase xerC gi|4376276|gb|AAD18177.1| Integrase/recombinase [Chlamydophila pneumoniae CWL029] gi|8163493|gb|AAF73701.1| integrase/recombinase, phage integrase family [Chlamydophila pneumoniae AR39] gi|8978399|dbj|BAA98236.1| integrase/recombinase [Chlamydophila pneumoniae J138] gi|33235871|gb|AAP97961.1| site-specific integrase/recombinase [Chlamydophila pneumoniae TW-183] Length = 312 Score = 119 bits (299), Expect = 5e-25, Method: Composition-based stats. Identities = 48/283 (16%), Positives = 106/283 (37%), Gaps = 29/283 (10%) Query: 66 KKPTTLKWLISEYRKSAHW----GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR- 120 P TL+ + + G+LA +S + + RK + + T +H+R Sbjct: 18 ASPHTLRNYCLDLNGLKIFLEERGNLAPSSPLQLATE----KRKVSELPFSLFTKEHVRM 73 Query: 121 --SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 + + + + L+S++ + V Q+ + NP ++ P+ E P T Sbjct: 74 YIAKLIENGKAKRTIKRCLSSIKSFAHYCVIQKILLENPAETIHGPRLPKELPSPMTYAQ 133 Query: 179 MQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTI 232 ++ + G + R E SGLR S+ Q ++ I+ K Sbjct: 134 VEVLMATPDISKYHGLRDRCLMELFYSSGLRISEIVAVNKQDFDLSTHLIRIR-GKGKKE 192 Query: 233 ITVELPDGFMKLLAMT---PIGK------ETFFINNDKQKMNATQFSIWFKAKATKAGV- 282 + + ++ + + P K + F+N ++++ F+ ++G+ Sbjct: 193 RIIPVTSNAIQWIQIYLNHPDRKRLEKDPQAIFLNRFGRRISTRSIDRSFQEYLRRSGLS 252 Query: 283 -NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 + + H +R AT ++G + A G +++ YT+ Sbjct: 253 GHITPHTIRHTIATHWLESGMDLKTIQALLGHSSLETTTVYTQ 295 >gi|189499779|ref|YP_001959249.1| tyrosine recombinase XerD [Chlorobium phaeobacteroides BS1] gi|189495220|gb|ACE03768.1| tyrosine recombinase XerD [Chlorobium phaeobacteroides BS1] Length = 305 Score = 119 bits (299), Expect = 5e-25, Method: Composition-based stats. Identities = 34/265 (12%), Positives = 94/265 (35%), Gaps = 25/265 (9%) Query: 85 GSLAVNSRISFESYFDQ--IIRKSGDFDYRKI---TTKHIRSGVESRKHTPSSAIQFLTS 139 + + ++ S+ + ++ + + + + + +H + S + +++ Sbjct: 24 RNFSSHTITSYANDLNRYLLFMQHSEKQIKAVVLTDIQHFIQELHEAGLESRSISRNISA 83 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEG---SQP 192 +R K+ +R+ + N S+ +PK + +++ + G + Sbjct: 84 IRSFHKFLIRENILEENAAKSLHQPKPGLHLPTVLSVDEVFRLLDAPLLEKPPGKYFLRD 143 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQH-LQNNIFSIKTQKTGTIITVELPDGFMKLLA----- 246 ++ E L +G+R S+ + + F+ K V + ++ + Sbjct: 144 KVLLELLYATGVRVSELINIQQSNCYLDAGFARIFGKGSKERLVPVGHTAIEWIRRYQQE 203 Query: 247 -----MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299 + F+N ++++ + ++ AG+ K S H +R AT + Sbjct: 204 LRLNMANRESGDYLFLNARGKQLSRMSAWNIVRRLSSVAGLTKKISPHTLRHTFATHLLE 263 Query: 300 AGATAHELMATYGWKTVDQAETYTK 324 GA + G ++ + YT Sbjct: 264 GGADLRAVQEMLGHSSIIATQIYTH 288 >gi|320354502|ref|YP_004195841.1| tyrosine recombinase XerC [Desulfobulbus propionicus DSM 2032] gi|320123004|gb|ADW18550.1| tyrosine recombinase XerC [Desulfobulbus propionicus DSM 2032] Length = 303 Score = 119 bits (299), Expect = 5e-25, Method: Composition-based stats. Identities = 44/280 (15%), Positives = 103/280 (36%), Gaps = 33/280 (11%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFES-YFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129 ++WL+ E + ++ ++ + G IT+ +++ V S + Sbjct: 9 VRWLLVE-------KGYSPHTADGYQRDLLEFQRFCGGVLSPESITSSLVQAFVGSLYAS 61 Query: 130 PSSAI--QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----QQFK 183 +SA + L+++R F++ +R++ + +P + PK T +++ + Sbjct: 62 NASASVARKLSALRTFFRFLLREKVIESDPVAGIVGPKLGHALPAFLTVDEVFSLLETPA 121 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVE------ 236 + + R E L +G+R ++ + + ++ + G V Sbjct: 122 TSDRYWRRDRAVMEVLYATGMRVAELVGCNREDVDLAAEMVRVRGKGRKERLVPFGRAAH 181 Query: 237 ------LPDGFMKLLAMTPIGK----ETFFINNDKQKMNATQFSIWFKAKATKAGVNKS- 285 LP+ +A G+ F+N +++A + A +AG+ + Sbjct: 182 EALEQYLPEREALCIARVQRGRKPEQRALFLNGRGTRLSARSVERSIQTYALRAGIGVTV 241 Query: 286 -AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R AT + GA + G ++ + YT Sbjct: 242 TPHALRHSFATHLLEMGADLRTVQELLGHVSLSTTQKYTH 281 >gi|256851129|ref|ZP_05556518.1| tyrosine recombinase XerC [Lactobacillus jensenii 27-2-CHN] gi|260660553|ref|ZP_05861468.1| tyrosine recombinase XerC [Lactobacillus jensenii 115-3-CHN] gi|282932232|ref|ZP_06337676.1| tyrosine recombinase XerC [Lactobacillus jensenii 208-1] gi|297205994|ref|ZP_06923389.1| tyrosine recombinase XerC [Lactobacillus jensenii JV-V16] gi|256616191|gb|EEU21379.1| tyrosine recombinase XerC [Lactobacillus jensenii 27-2-CHN] gi|260548275|gb|EEX24250.1| tyrosine recombinase XerC [Lactobacillus jensenii 115-3-CHN] gi|281303627|gb|EFA95785.1| tyrosine recombinase XerC [Lactobacillus jensenii 208-1] gi|297149120|gb|EFH29418.1| tyrosine recombinase XerC [Lactobacillus jensenii JV-V16] Length = 302 Score = 119 bits (299), Expect = 5e-25, Method: Composition-based stats. Identities = 43/280 (15%), Positives = 105/280 (37%), Gaps = 25/280 (8%) Query: 70 TLKWLISEYRKSAHW-GSLAVNSRISFESYF----DQIIRKSGDFDYRKITTKHIRSGVE 124 T K L+ +++ + + + ++ + D G + +++++ + + Sbjct: 2 TKKSLLEQFKDYLAYERGYSNLTLTAYINDLKQAEDFWKNNGGFNGFEQVSSRDVEIFIT 61 Query: 125 SRKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 S + +S + L+S++ L+K+ R+ VA++P +V ++ + + + ++++ Sbjct: 62 SLASAGLSQASQARKLSSLKSLYKFLTRRNLVAVDPTQTVSIHRKSKKLPEFFYEPEIKK 121 Query: 182 FKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVE 236 S + + FE +G+R S+ +Q + + + K V Sbjct: 122 VLDSLSASDKFTVRNKAMFELFYATGMRVSEVSNLTLQQVDFDVQMILVHGKGNKDRYVP 181 Query: 237 LPDGFMKLLAMT---------PIGKETF-FINNDKQKMNATQFSIWFKAKATKAGV--NK 284 D L P F F++N ++ + + K G+ N Sbjct: 182 FGDYAKASLLRYLNEARSLFNPDENNHFVFLDNRGHQLTSRGIEYIMRKVFQKGGLSANV 241 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R AT + GA + G +++ + YT Sbjct: 242 HPHELRHTFATQMLNNGADLRSVQELLGHESLSTTQIYTH 281 >gi|78355959|ref|YP_387408.1| integrase/recombinase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78218364|gb|ABB37713.1| integrase/recombinase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 304 Score = 119 bits (299), Expect = 5e-25, Method: Composition-based stats. Identities = 42/270 (15%), Positives = 85/270 (31%), Gaps = 28/270 (10%) Query: 86 SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---------KHTPSSAI-- 134 + + ++ + R + + I ++ P SA Sbjct: 25 GRSPATIAAYRRDLALVARVADELAPGIICRAITAGLLDRAFSAGAVTESGRGPRSAASL 84 Query: 135 -QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS--- 190 + ++R F WA V NP S+ + + T + ++ + Sbjct: 85 HRMKAAVRAFFAWASEAGVVDDNPARSIRMHRLPRKLPVFLTTAEKKRLLKELKGRTDFS 144 Query: 191 --QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE---------LPD 239 + R E LL +G+R + + + + ++ + G + V+ L Sbjct: 145 ALRDRAMIEVLLGTGIRLGELAALDMDDIDLDAKHLRVRAKGNVPQVKFIKTDLRTLLRR 204 Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS 297 + E F++N ++ Q + KAG+ K + HG+R AT Sbjct: 205 YLAERRRHGRPEMEALFLSNRDGRLCQRQIANRLAHWLRKAGIEKELTPHGLRHTFATHL 264 Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGAD 327 A + G + V + YT D Sbjct: 265 YGATNDLLVVQRALGHRDVSTTQIYTHLVD 294 >gi|220931948|ref|YP_002508856.1| phage integrase family protein [Halothermothrix orenii H 168] gi|219993258|gb|ACL69861.1| phage integrase family protein [Halothermothrix orenii H 168] Length = 310 Score = 119 bits (299), Expect = 5e-25, Method: Composition-based stats. Identities = 51/284 (17%), Positives = 96/284 (33%), Gaps = 34/284 (11%) Query: 85 GSLAVNSRISFESYFD----QIIRKSG---DFDYRKITTKHIRSGVES----RKHTPSSA 133 + + +E + + + G DF KI HI + + P++ Sbjct: 22 RGYSPLTVKEYERDLNLFYIYLTNEMGFKNDFSLDKINKYHIAEFLGDTILVHDNAPTTR 81 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP---WTKED--MQQFKSFWSE 188 + L S+R FK+ V+ EY+ +NP ++E K + ++ K Sbjct: 82 NRKLYSIRSFFKFLVKYEYIKVNPAATIEASKTEVRAEPIYMKLNDAQKYIETIKKHGGV 141 Query: 189 GSQPRLAF-EFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLA 246 + LA + LY+GLR S+ + + SIK K V L + + Sbjct: 142 NLKRDLAIVKLFLYAGLRVSELVGLDLDDIDFKDQSIKFYGKGKKERYVPLHPDVIMSIK 201 Query: 247 MTPIGKE-----------TFFINNDKQKMNATQFSIWFKAKATKAGVN----KSAHGVRK 291 + F++ ++++ + K A AGV + H +R Sbjct: 202 NYFPERNEIQPKNEDAIKALFLSRHGKRISVRTIQMMVKKYAKLAGVKNADKITPHKLRH 261 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIK 334 A++ L G + + YT + + IK Sbjct: 262 TFASLLYHKTKDLKILQDLLGHADISTTQIYTHTDVKQRKKAIK 305 >gi|313901171|ref|ZP_07834659.1| tyrosine recombinase XerC [Clostridium sp. HGF2] gi|312954129|gb|EFR35809.1| tyrosine recombinase XerC [Clostridium sp. HGF2] Length = 302 Score = 119 bits (299), Expect = 5e-25, Method: Composition-based stats. Identities = 49/288 (17%), Positives = 108/288 (37%), Gaps = 30/288 (10%) Query: 77 EYRKSAHWGSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIRSGVESRKHTP--- 130 +Y S + S +V++R +++ + I ++ G + + + + + S + P Sbjct: 10 QYMDSLN--SGSVHTRAAYQRDIREFISFLQEEGIEELQDADRIIVMNYIASLREKPGVS 67 Query: 131 -----SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 S+ + L+S+R +++ + NP L + PKR ++M F S Sbjct: 68 GEMKNSTIARKLSSLRSFYRYLNEYVGITQNPFLYFKTPKRAKRIPEFLFYDEMDTFLSS 127 Query: 186 W----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITV---- 235 + +G + R FE + GLR S++ + + + I +I + I Sbjct: 128 FDLDTPDGLRDRAMFELMYACGLRVSEAASLRLYDIDLHDRILTIHGKGNKQRIVPFYAL 187 Query: 236 --ELPDGFMKLLAMT--PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGV 289 EL + +++ + + FIN + + + A + + H Sbjct: 188 AGELLEHYLQEVRPQWMKEEHDIVFINQRGKGLTTRGIQYRMQLAADTCSLSVHVHPHMF 247 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNS 336 R AT D GA + G ++ + Y +R++ ++ Sbjct: 248 RHSFATHLLDNGADLRVVQELLGHASLSTTQVYVHVTQERLKKAYTHA 295 >gi|171316503|ref|ZP_02905720.1| integrase family protein [Burkholderia ambifaria MEX-5] gi|171098337|gb|EDT43142.1| integrase family protein [Burkholderia ambifaria MEX-5] Length = 342 Score = 119 bits (299), Expect = 5e-25, Method: Composition-based stats. Identities = 59/349 (16%), Positives = 114/349 (32%), Gaps = 37/349 (10%) Query: 1 MTPSLRLPPFVTKERTRH---GKIIYYFRKG--HGRRIRLPYPHESTFIPAYMSALTGST 55 M + P + + R+R G + YY+ G GRRI P + + L G+ Sbjct: 1 MAGKAQTPGAIPRFRSRKNADGSLRYYYDHGEVDGRRILEPLGTDRVVALQRWAELEGAR 60 Query: 56 PKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT 115 S T L YR + ++ ++ + ++ GD + +T Sbjct: 61 A-----PSSETTRHTFAMLGQAYRV-RELPQKSAATQRMYDLFLSRLAAVIGDRELDTLT 114 Query: 116 TKHIRSGVESRKHTPS--SAIQFLTSMRVLFKWAVRQEYVA-INPCLSVERPKRKTEGIR 172 + + + +A + + ++ + NPC V R K++T Sbjct: 115 PADVATIWRATAEKRGVVTANRTKAVLSLVLNCGRLWGMMTIANPCAGV-RGKKETGRQD 173 Query: 173 PWTKEDMQQFKSFWSEGSQP-RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231 +++ + + ++ QP R A + R SD R ++ +TQKTG Sbjct: 174 ILIDDEL--YAAVYTVADQPLRNAMDLADLCAQRPSDVLRVQRSNIVRGNLIFRTQKTGA 231 Query: 232 IITVELPDGFMKLLAMTPI-------GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284 +TV++ L+ + + + + F +AG++K Sbjct: 232 FVTVQITGDLAALIERLLAWRGSKVDVSPYLLRDEEGYPLTKGKLRSRFDKARERAGIDK 291 Query: 285 SAHGVRKFSATISADAGATAHEL-------MATYGWKTVDQAETYTKGA 326 + KF G T + G Y +GA Sbjct: 292 A-----KFQFRDLRARGVTHKTIDEGLEAGQRLAGHSGPGMTARYVRGA 335 >gi|307264510|ref|ZP_07546095.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|306870207|gb|EFN01966.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 336 Score = 119 bits (299), Expect = 5e-25, Method: Composition-based stats. Identities = 36/259 (13%), Positives = 89/259 (34%), Gaps = 19/259 (7%) Query: 85 GSLAVNSRISFESYFDQIIR---KSGDFDYRKITTKHIRSGV---ESRKHTPSSAIQFLT 138 + ++ +++ + ++G ++++ + +R + + S L Sbjct: 53 KQASQHTLSNYQRQLLAVSDMLSQAGISTWQEVNSATVRWIIAQSNKQGLGAKSIALRLV 112 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS---FWSEGSQPRLA 195 ++R F + +RQE +++NP + ++ PK + E + Q + + Sbjct: 113 ALRQWFSYLIRQEKMSVNPAVGIKAPKASKRLPKNIDAEQIGQLLTSDSHEPSDLRDLAM 172 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMT------ 248 E + SGLR S+ + + ++ K V + ++ L Sbjct: 173 MELMYSSGLRLSELQGLDLGDMDLAGREVRLLGKGNKERIVPIGSKALEALNRWLAVRNQ 232 Query: 249 -PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAH 305 F+N +++ + + K G+ + H +R AT +A Sbjct: 233 FKPQDNAVFLNKRGGRLSHRSIQLVMQKWGEKQGLESHLHPHKLRHSFATHMLEASGDLR 292 Query: 306 ELMATYGWKTVDQAETYTK 324 + G + + YT Sbjct: 293 AVQELLGHSNLATTQIYTH 311 >gi|296394365|ref|YP_003659249.1| integrase family protein [Segniliparus rotundus DSM 44985] gi|296181512|gb|ADG98418.1| integrase family protein [Segniliparus rotundus DSM 44985] Length = 304 Score = 119 bits (299), Expect = 5e-25, Method: Composition-based stats. Identities = 44/292 (15%), Positives = 100/292 (34%), Gaps = 38/292 (13%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH----------IRSGV 123 +++Y + + + N+ ++ + D + + T H +R + Sbjct: 5 LAQYERHLRFERGRSPNTVRAYLGDLRAYFGPAVDGNDQDDTAAHEVLGAVTIADLRGWL 64 Query: 124 ESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 + ++ + + M+ F+WA+R +P + PK + ++ + Sbjct: 65 SEMTAEGASRATLARRASGMKTFFEWAMRNGLAEHDPTARLSTPKLRRTLPHVLRQDQAE 124 Query: 181 Q------FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTII 233 Q + + +L E L +G+R + C + + + + K Sbjct: 125 QALGPAPHQREGPLALRDQLILELLYGTGMRVGELCGLDLDDIDQDRRLATVLGKGDKQR 184 Query: 234 TVE------------LPDGFMKLLAMTPIGKETFFINNDKQKM-NATQFSIWFKAKATKA 280 V L DG L+ P + +++ T + + A +A Sbjct: 185 AVPFGAKAADALAAWLRDGRPALV--GPRSGAALLLGARGKRLDPRTARRVVQERVAEEA 242 Query: 281 GVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIR 330 G+ HG+R +AT + GA + G ++ + YT +R+R Sbjct: 243 GLPSLGPHGLRHSAATHLLEGGADLRVVQEILGHSSLATTQIYTHVSVERLR 294 >gi|223044229|ref|ZP_03614266.1| tyrosine recombinase XerC [Staphylococcus capitis SK14] gi|222442379|gb|EEE48487.1| tyrosine recombinase XerC [Staphylococcus capitis SK14] Length = 296 Score = 119 bits (299), Expect = 5e-25, Method: Composition-based stats. Identities = 39/265 (14%), Positives = 94/265 (35%), Gaps = 20/265 (7%) Query: 85 GSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGVE---SRKHTPSSAIQFLTS 139 + + + S+ Q S D K R+ + S ++ + +++ Sbjct: 16 RNFSEYTLKSYHDDLIQFNDFLVSEHLDLATFEYKDARNYLSFLYSHNLKRTTVSRKIST 75 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRLA 195 +R +++ + Q+ +NP + + PK++ + + +E+M+ +G + R+ Sbjct: 76 LRTFYEYWMTQDESIVNPFVQLVHPKKEQYLPQFFYEEEMEALFQTVKQDSKKGIRDRVI 135 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE--------LPDGFMKLLA 246 E L +G+R S+ ++ + N+ +K K + + + Sbjct: 136 IELLYATGIRVSELVNIKIKDIDMNLPGVKVLGKGNKERFIPFGEFCKQSIERYLDEFQP 195 Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATK-AGV-NKSAHGVRKFSATISADAGATA 304 E +N + + + AGV + H +R AT + GA Sbjct: 196 RKTNDHEYLIVNMNGAPITERGVRYVLNDVVKRTAGVTDIHPHKLRHTFATHLLNQGADL 255 Query: 305 HELMATYGWKTVDQAETYTKGADRI 329 + + G + YT +++ Sbjct: 256 RTVQSLLGHVNLSTTGRYTHVSNQQ 280 >gi|269836497|ref|YP_003318725.1| integrase family protein [Sphaerobacter thermophilus DSM 20745] gi|269785760|gb|ACZ37903.1| integrase family protein [Sphaerobacter thermophilus DSM 20745] Length = 306 Score = 119 bits (299), Expect = 6e-25, Method: Composition-based stats. Identities = 39/288 (13%), Positives = 98/288 (34%), Gaps = 26/288 (9%) Query: 85 GSLAVNSRISFESYFDQ----IIRKSGDFDYRKIT---TKHIRSGVESRKHTPSSAIQFL 137 + N+ ++ + Q + + + ++T + + R + ++ + + Sbjct: 16 RGFSPNTVSAYRNDLSQFCHFLCEQHVLQSWAELTGTILTNYVLYLRERGYANATVARKV 75 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF-----KSFWSEGSQP 192 +++ + V + +P + PK R T E ++ + E + Sbjct: 76 AAVKSFCHYLVECGELRHDPAAELPSPKVDKFIPRAITPEQVEALLAQPARERTPEALRD 135 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-ITVELPDGFMKLLA----- 246 + E L SG+R S+ V L ++ V L + L Sbjct: 136 KAMLETLYASGMRVSELTALNVDDLDLEAGRVRCGNKPERQRWVPLSSSAIAALDEYLQL 195 Query: 247 -----MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADA 300 ++ F+N+ ++ F + K+ A A + + + H +R A + Sbjct: 196 GRPFLRQSPAEQALFLNHRGSRLTRQGFWLILKSYAEAAELGDITPHTLRHTFAAHALTR 255 Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRLGIKN--SRRISSVVDSD 346 G E+ G ++ + Y + A ++ + +++ D+D Sbjct: 256 GRALREVQQVLGHVSISTTQVYQQVAAQVGRANGHALVSTVAACYDND 303 >gi|255311152|ref|ZP_05353722.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis 6276] gi|255317453|ref|ZP_05358699.1| site-specific tyrosine recombinase XerC [Chlamydia trachomatis 6276s] Length = 315 Score = 119 bits (299), Expect = 6e-25, Method: Composition-based stats. Identities = 37/223 (16%), Positives = 80/223 (35%), Gaps = 18/223 (8%) Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 H+ + + L++++ ++ V+ + + NP + P+ E P T E + + Sbjct: 83 HSKRTVRRRLSAIKSFARFCVKNQLIPENPVEMIRGPRLPQELPSPLTYEQVLALMAAPE 142 Query: 188 E----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPD-- 239 G + R E SGLR S+ + +++ I+ K V + Sbjct: 143 LDKVTGFRDRCLLELFYSSGLRISEITALNRADIDFQSHLLHIR-GKGKKERIVPMTKVA 201 Query: 240 --GFMKLLAMTPI-----GKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVR 290 L + F+N ++++ F+ K G++ S H +R Sbjct: 202 VQWLQDYLNHPDRASVEQDHQACFLNRFGKRLSTRSIDRKFQQYLLKTGLSGSITPHTIR 261 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 AT + G + G +++ YT + +++ I Sbjct: 262 HTIATHWLERGMDLKTIQLLLGHTSLETTTIYTHVSMKLKKQI 304 >gi|229494828|ref|ZP_04388582.1| tyrosine recombinase XerD [Rhodococcus erythropolis SK121] gi|229318266|gb|EEN84133.1| tyrosine recombinase XerD [Rhodococcus erythropolis SK121] Length = 307 Score = 119 bits (299), Expect = 6e-25, Method: Composition-based stats. Identities = 44/269 (16%), Positives = 87/269 (32%), Gaps = 33/269 (12%) Query: 88 AVNSRISFESYFDQIIRKSGDFDYRKIT----------TKHIRSGVESRKHTP---SSAI 134 A N+ +S+ ++ + H+R G + P SSA Sbjct: 20 ARNTLLSYRRDLNRYAEYLNGRGIDDVAGVTENDVTEFVTHLRLGDKDAGVVPLAASSAA 79 Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-------- 186 + L ++R K++ + V+++ +V+ P + + +D+ Sbjct: 80 RTLIAVRGFHKFSAAEGLVSVDVARTVKPPTPGRKLPKALPLDDVIALLDASGGGAAGDG 139 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFMKLL 245 + R E L +G R +++ V + + K G V + + + Sbjct: 140 PRDLRDRALLELLYSTGARITEAIDLDVDDIDTETRSVLLKGKGGKQRIVPVGRPAIAAV 199 Query: 246 AM---------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSA 294 G F+N +++ + A AG+ S H +R A Sbjct: 200 DAYLVRGRPSLATRGVPALFLNARGGRLSRQSAWQILQDAAASAGIKADVSPHTLRHSFA 259 Query: 295 TISADAGATAHELMATYGWKTVDQAETYT 323 T D GA + G +V + YT Sbjct: 260 THLLDGGADVRVVQELLGHASVTTTQIYT 288 >gi|169830947|ref|YP_001716929.1| phage integrase family protein [Candidatus Desulforudis audaxviator MP104C] gi|169637791|gb|ACA59297.1| phage integrase family protein [Candidatus Desulforudis audaxviator MP104C] Length = 286 Score = 119 bits (299), Expect = 6e-25, Method: Composition-based stats. Identities = 44/255 (17%), Positives = 85/255 (33%), Gaps = 15/255 (5%) Query: 85 GSLAVNSRISF----ESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKHTPSSAIQFLT 138 LA + + + + G+ D +T+ + + P++ L Sbjct: 16 RGLAPATAGVYLGHVRRFLAWVEGTHGEADVAAVTSLDVADYRRHLLKDRKPATVNNALD 75 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF-KSFWSEGS-QPRLAF 196 ++ F WA V +P V R + + R T+ ++ ++ GS + + Sbjct: 76 ALSSFFAWAKDAGLVQADPTDGVRRAQEERGAPRWLTRREVGALVRAVQKHGSKRDQALV 135 Query: 197 EFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVELPDGFMKLLA---MTP 249 LL++GLR S++ Q ++ ++ K V L K L Sbjct: 136 TLLLHTGLRVSEAVGLKTQDAVIRERSGHVIVRRGKGEKYREVPLNVTARKALQDWLAAH 195 Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMA 309 G F + + F AGV + H +R + DAG + + Sbjct: 196 PGGPWLFPGRGEAPLTRWAAEKMFAKLGRLAGVEVTPHKLRHTFCKMLVDAGESLDRVAV 255 Query: 310 TYGWKTVDQAETYTK 324 G ++ YT+ Sbjct: 256 LAGHANLNTTARYTR 270 >gi|329956681|ref|ZP_08297254.1| putative tyrosine recombinase XerC [Bacteroides clarus YIT 12056] gi|328524053|gb|EGF51129.1| putative tyrosine recombinase XerC [Bacteroides clarus YIT 12056] Length = 294 Score = 119 bits (299), Expect = 6e-25, Method: Composition-based stats. Identities = 41/242 (16%), Positives = 86/242 (35%), Gaps = 19/242 (7%) Query: 103 IRKSGDFDYRKITTKHIRSGV---ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCL 159 G+ + + +R + R + +S + L+S+R +K+ +R+ V +P Sbjct: 37 EELLGNLTPSDVDVELVREWIASLMDRGYAFNSINRKLSSIRTYYKYLLRKGVVESDPLQ 96 Query: 160 SVERPKRKTEGIRPWTKEDMQQFKSFWS-----EGSQPRLAFEFLLYSGLRCSDSCRAGV 214 + RP++K + +M + EG + R+ E +G+R S+ Sbjct: 97 KITRPRKKKPLPVFLRESEMNRLLDDIDFGEGFEGCRDRMIVEMFYATGMRLSELVGLDD 156 Query: 215 QHLQNNIFSIKT-QKTGTIITVELPDGFMKLL--------AMTPIGKETFFINNDKQKMN 265 + + IK K + + + P+ + FFI + ++ Sbjct: 157 KDVDFLASLIKVVGKRNKQRLIPFDEELRCSMQEYVNERNKSFPVRSDAFFIRKNGGRIT 216 Query: 266 ATQFSIWFKA--KATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 + + K +S H +R AT + GA + G +++ E YT Sbjct: 217 RSIVAYIVKRNLSKVVTVKKRSPHVLRHTFATAMLNNGADLGSIKELLGHESLATTEVYT 276 Query: 324 KG 325 Sbjct: 277 HA 278 >gi|84502972|ref|ZP_01001074.1| tyrosine recombinase XerD [Oceanicola batsensis HTCC2597] gi|84388717|gb|EAQ01588.1| tyrosine recombinase XerD [Oceanicola batsensis HTCC2597] Length = 315 Score = 119 bits (299), Expect = 6e-25, Method: Composition-based stats. Identities = 42/268 (15%), Positives = 93/268 (34%), Gaps = 31/268 (11%) Query: 88 AVNSRISFESYFDQI-----IRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRV 142 + N+ +++ + + + + +++ + ++ + L+++R Sbjct: 24 SRNTLLAYGRDLKDFAGWLERQHHAIDSATRADVEAYLTDCDAQGLSQATRARRLSAIRQ 83 Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-------SEGSQPRLA 195 LF++A + + + NP + + P R + R T +++ S+ + Sbjct: 84 LFRFAFEEGWRSDNPAIEIRGPGRSRKLPRTLTTDEVGALLDAARTKGRNESDRLRNTCL 143 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET 254 E L +G+R ++ + + + + K G V L + LA +E Sbjct: 144 MELLYATGMRVTELVSLPLAAARGDPRMLLIRGKGGKERMVPLSPPAREALAAWLAAREA 203 Query: 255 ---------------FFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSATI 296 F + + + +F I K A AGV + H +R AT Sbjct: 204 RDEALPRGARPSRALFPSRSAEGHLTRHRFYILIKEIALAAGVSPAKVTPHTLRHAFATH 263 Query: 297 SADAGATAHELMATYGWKTVDQAETYTK 324 + GA + G + E YT Sbjct: 264 LLENGADLRAIQTLLGHADLATTEIYTH 291 >gi|259500641|ref|ZP_05743543.1| integrase/recombinase XerC [Lactobacillus iners DSM 13335] gi|302191330|ref|ZP_07267584.1| integrase/recombinase CodV [Lactobacillus iners AB-1] gi|259168025|gb|EEW52520.1| integrase/recombinase XerC [Lactobacillus iners DSM 13335] Length = 307 Score = 119 bits (299), Expect = 6e-25, Method: Composition-based stats. Identities = 36/279 (12%), Positives = 97/279 (34%), Gaps = 26/279 (9%) Query: 72 KWLISEYRKS-AHWGSLAVNSRISFESYFDQ----IIRKSGDFDYRKITTKHIR---SGV 123 + Y + + ++N+ ++ + + G D+ K++++ I + Sbjct: 5 DDFLKLYYNYLKNERNYSINTCKAYMDDLSEARTFFVENGGFIDWLKLSSRDIEIFIQYL 64 Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 +K S+ + ++++R +++ ++ + +NP + + ++M + Sbjct: 65 AQKKDKRSTQSRKISTLRSFYRFLNKRNIIPVNPVELISLRGEHKKLPEFLYSDEMVKVL 124 Query: 184 S----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKT-------G 230 G + E +G+R S+ + + N+ + + G Sbjct: 125 KSISTTTPLGLRNMALLELFYATGMRVSEISNLKLDQIDFELNLILVHGKGNKDRYVAFG 184 Query: 231 TIITVELPDGFMKLLAMT---PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS-- 285 L + ++ F+N++ ++ + K AGV+ S Sbjct: 185 EEAKTALNNYLVEARKKLLLHKTDYGYVFLNSNGNRITSRGLEYIIKNIFLNAGVSASVH 244 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R AT + GA + G +++ + YT Sbjct: 245 PHMLRHTFATQMLNNGADLRTVQELLGHESISTTQIYTH 283 >gi|28198917|ref|NP_779231.1| phage-related integrase [Xylella fastidiosa Temecula1] gi|182681625|ref|YP_001829785.1| integrase family protein [Xylella fastidiosa M23] gi|28057015|gb|AAO28880.1| phage-related integrase [Xylella fastidiosa Temecula1] gi|182631735|gb|ACB92511.1| integrase family protein [Xylella fastidiosa M23] gi|307580060|gb|ADN64029.1| integrase family protein [Xylella fastidiosa subsp. fastidiosa GB514] Length = 339 Score = 119 bits (299), Expect = 6e-25, Method: Composition-based stats. Identities = 60/332 (18%), Positives = 110/332 (33%), Gaps = 26/332 (7%) Query: 7 LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66 +P F + + + G + YY+ G R P Y A+ + E+ Sbjct: 11 IPRFRVRPQ-KSGVVYYYYDHGGKPRKETPLG------RDYGLAI-KRWAELEHAQITPA 62 Query: 67 KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVE 124 T + + YR + A N++ +++ D + I +IR ++ Sbjct: 63 IAVTFRHVAERYRAEVT-PTKAYNTQRVEHRCLAPLLKFFDDPPAPFEAIKPVNIRQYLD 121 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVA-INPCLSVERPKRKTEGIRPWTKEDMQQFK 183 R A + ++ L+ WA + NPC + R K + +D Sbjct: 122 WRTSKV-IANREVSVFSHLWNWARSKGITDLPNPCGGIRRNKATGRDVYV---DDTTYRS 177 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243 + + R A + +G R SD +H+ N I KTG + + + Sbjct: 178 VYQAADQTLRDAMDLAYLTGQRVSDVVSMDERHIVNGALEICQAKTGAKLAITVTGELAV 237 Query: 244 LLAMTPIGKE-------TFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKFS 293 L+ K ++ + +++ F AGV K +R + Sbjct: 238 LIKRIFDRKRGMKLRSTRLIVDAEGLELSRIGLRYRFDKARAAAGVAKEVFQFRDLRAKA 297 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKG 325 AT AD + A G +V E Y + Sbjct: 298 ATDKADLAGDIRQAQAQLGHASVTMTEHYVRK 329 >gi|152979627|ref|YP_001345256.1| site-specific tyrosine recombinase XerC [Actinobacillus succinogenes 130Z] gi|171704362|sp|A6VQS4|XERC_ACTSZ RecName: Full=Tyrosine recombinase xerC gi|150841350|gb|ABR75321.1| tyrosine recombinase XerC [Actinobacillus succinogenes 130Z] Length = 295 Score = 119 bits (299), Expect = 6e-25, Method: Composition-based stats. Identities = 44/260 (16%), Positives = 94/260 (36%), Gaps = 21/260 (8%) Query: 85 GSLAVNSRISFESYFDQIIR---KSGDFDYRKITTKHIRSGV-ESRKHTPS--SAIQFLT 138 L+ + ++ + ++G ++++T +R + ESRK S L+ Sbjct: 16 RRLSPYTLTNYRRQLSAVTELLTQNGIRSWQQVTPSVVRFILAESRKAGLHEKSLALRLS 75 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF---KSFWSEGSQPRLA 195 ++R + V QE + +NP + PK+ + +E + + +S + R Sbjct: 76 ALRQFLAYLVVQEELKVNPATGISAPKQGKYLPKNIDQEQIGKLLDNRSNEPIDIRDRAM 135 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------ELPDGFMKLLA 246 E + SGLR S+ + H+ ++ G+ + + D L Sbjct: 136 LELMYSSGLRLSELHGLDLNHVNLQSREVRVLGKGSKERILPVGHQALDAVLDWLQVRLR 195 Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATA 304 P F+++ ++ + K G+ + + H +R AT +A A Sbjct: 196 FNP-KDNALFVSSQGGRLTPRAIQKRMEIWGVKQGLSTHLNPHKLRHSFATHMLEASADL 254 Query: 305 HELMATYGWKTVDQAETYTK 324 + G + + YT Sbjct: 255 RAVQELLGHSNLATTQIYTH 274 >gi|317132367|ref|YP_004091681.1| integrase family protein [Ethanoligenens harbinense YUAN-3] gi|315470346|gb|ADU26950.1| integrase family protein [Ethanoligenens harbinense YUAN-3] Length = 334 Score = 119 bits (299), Expect = 6e-25, Method: Composition-based stats. Identities = 57/303 (18%), Positives = 116/303 (38%), Gaps = 22/303 (7%) Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDY-RKITTKHIRSGVE 124 K P T++ ++ R + S + ++ FD+I D + IT I + Sbjct: 25 KSPGTVREYENDLRTFFRFIKQMRGS-VPRDTPFDEIAIDDVDIPFLASITLADIYEYLN 83 Query: 125 ----SRKHTPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTKED- 178 RK+ +S + ++S+R +K+ + + NP +E PK+K + T E+ Sbjct: 84 YITNERKNRAASRARKVSSLRSFYKYLCERAGILQENPTRDLEAPKQKKSLPKYLTLEES 143 Query: 179 MQQFKSFW-SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL 237 M+ + ++ L G+R S+ + ++N+ ++ T K T+ L Sbjct: 144 MEVLRDIDGKFAARDYCIMTLFLNCGMRLSELVGLNLSDIRNSTMTV-TGKGNKQRTIYL 202 Query: 238 PDGFMKLLAM--------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSA 286 + ++ L + ++ F++N Q+++ +AG+ S Sbjct: 203 NEACLQALERYLAVRAKDSVKDRDALFLSNRLQRISPKTVQAIVYKYLERAGLSGRGLSV 262 Query: 287 HGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDS 345 H +R +AT+ G L G + + E YT +DR N ++ Sbjct: 263 HKLRHTAATLLYQHGHVDVRVLQEILGHENLSTTEIYTHLSDRQLQDAVNRSPLAHFSGQ 322 Query: 346 DDP 348 P Sbjct: 323 KAP 325 >gi|307251104|ref|ZP_07533028.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306856934|gb|EFM89066.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar 4 str. M62] Length = 336 Score = 119 bits (299), Expect = 6e-25, Method: Composition-based stats. Identities = 36/259 (13%), Positives = 89/259 (34%), Gaps = 19/259 (7%) Query: 85 GSLAVNSRISFESYFDQIIR---KSGDFDYRKITTKHIRSGV---ESRKHTPSSAIQFLT 138 + ++ +++ + ++G ++++ + +R + + S L Sbjct: 53 KQASQHTLSNYQRQLLAVSDMLSQAGISTWQEVNSATVRWIIAQSNKQGLGAKSIALRLV 112 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS---FWSEGSQPRLA 195 ++R F + +RQE +++NP + ++ PK + E +Q + + Sbjct: 113 ALRQWFSYLIRQEKMSVNPAVGIKAPKASKRLPKNIDAEQAKQLLTSDSHEPSDLRDLAM 172 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMT------ 248 E + SGLR S+ + + ++ K V + ++ L Sbjct: 173 MELMYSSGLRLSELQGLDLGDMDLAGREVRLLGKGNKERIVPIGSKALEALNRWLAVRNQ 232 Query: 249 -PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAH 305 F+N +++ + + K G+ + H +R AT +A Sbjct: 233 FKPQDNAVFLNKRGGRLSHRSIQLVMQKWGEKQGLESHLHPHKLRHSFATHMLEASGDLR 292 Query: 306 ELMATYGWKTVDQAETYTK 324 + G + + YT Sbjct: 293 AIQELLGHSNLATTQIYTH 311 >gi|126209269|ref|YP_001054494.1| site-specific tyrosine recombinase XerC [Actinobacillus pleuropneumoniae L20] gi|307248877|ref|ZP_07530889.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|307253490|ref|ZP_07535361.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|126098061|gb|ABN74889.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar 5b str. L20] gi|306854614|gb|EFM86805.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306859169|gb|EFM91211.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 336 Score = 119 bits (299), Expect = 6e-25, Method: Composition-based stats. Identities = 36/259 (13%), Positives = 89/259 (34%), Gaps = 19/259 (7%) Query: 85 GSLAVNSRISFESYFDQIIR---KSGDFDYRKITTKHIRSGV---ESRKHTPSSAIQFLT 138 + ++ +++ + ++G ++++ + +R + + S L Sbjct: 53 KQASQHTLSNYQRQLLAVSDMLSQAGISTWQEVNSATVRWIIAQSNKQGLGAKSIALRLV 112 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS---FWSEGSQPRLA 195 ++R F + +RQE +++NP + ++ PK + E + Q + + Sbjct: 113 ALRQWFSYLIRQEKMSVNPAVGIKAPKASKRLPKNIDAEQIGQLLTSDSHEPSDLRDLAM 172 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMT------ 248 E + SGLR S+ + + ++ K V + ++ L Sbjct: 173 MELMYSSGLRLSELQGLDLGDMDLAGREVRLLGKGNKERIVPIGSKALEALNRWLAVRNQ 232 Query: 249 -PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAH 305 F+N +++ + + K G+ + H +R AT +A Sbjct: 233 FKPQDNAVFLNKRGGRLSHRSIQLVMQKWGEKQGLESHLHPHKLRHSFATHMLEASGDLR 292 Query: 306 ELMATYGWKTVDQAETYTK 324 + G + + YT Sbjct: 293 AVQELLGHSNLATTQIYTH 311 >gi|161869347|ref|YP_001598514.1| integrase/recombinase [Neisseria meningitidis 053442] gi|189030079|sp|A9M1G2|XERC_NEIM0 RecName: Full=Tyrosine recombinase xerC gi|161594900|gb|ABX72560.1| integrase/recombinase [Neisseria meningitidis 053442] Length = 305 Score = 119 bits (299), Expect = 6e-25, Method: Composition-based stats. Identities = 36/278 (12%), Positives = 84/278 (30%), Gaps = 24/278 (8%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD-------YRKITTKHIRSGV 123 Y ++ + ++ ++ +++ + ++ + + + Sbjct: 6 FAAHFDAYLENIVREGKSEHTVAAYRRDLEELFALLAQMPSEAEGGVPQGLSRRDFTAAL 65 Query: 124 ES---RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 R + + L+S R W V + + +P ++ PK+ + +E + Sbjct: 66 RRLSQRGLNARTLARKLSSWRQYCVWLVERGLLHTDPTADIKPPKQPERVPKALPQEWLN 125 Query: 181 QFKSF-----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIIT 234 + + FE + SGLR S+ + + + G Sbjct: 126 RMLDLPVDGGDPLAVRDHALFELMYGSGLRVSEIHGLNADDVYLDEAWVHVTGKGRKQRQ 185 Query: 235 VELP----DGFMKL--LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK--AGVNKSA 286 V L + L T + F + +++ Q A + G + S Sbjct: 186 VPLTGKSVEALKNYLPLRQTASDGKALFTGRNGTRLSQRQIQKRLAQWAAQNGDGRHVSP 245 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R A A + G ++ + YTK Sbjct: 246 HMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTK 283 >gi|227544897|ref|ZP_03974946.1| tyrosine recombinase [Lactobacillus reuteri CF48-3A] gi|300910076|ref|ZP_07127536.1| integrase/recombinase XerD [Lactobacillus reuteri SD2112] gi|227185109|gb|EEI65180.1| tyrosine recombinase [Lactobacillus reuteri CF48-3A] gi|300892724|gb|EFK86084.1| integrase/recombinase XerD [Lactobacillus reuteri SD2112] Length = 297 Score = 119 bits (299), Expect = 6e-25, Method: Composition-based stats. Identities = 40/263 (15%), Positives = 91/263 (34%), Gaps = 25/263 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP------SSAIQFLT 138 L+ N+ +S++ +Q + D ++ S+ + ++ Sbjct: 16 RQLSDNTLMSYQRDLEQTVTYLEDRGIDDWQQVDHYLLIDLLNSLRQQGKANSTINRVIS 75 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKR--KTEGIRPWTKEDMQQFKSF----WSEGSQP 192 S+R +K+ +R + INP ++ + T+++++Q + G + Sbjct: 76 SLRQFYKYMIRHHNLTINPMEMIDHQYTFNQPPAPVILTEKEIEQLLAVPDVSTPIGLRD 135 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLAM---- 247 R E + +G+R S+ + L ++ ++ T K + L +K L Sbjct: 136 RALLEIMDATGMRVSEVIALDLTALHLDVKLLQLTGKNERERMIPLSQPAVKWLTGYLNR 195 Query: 248 -----TPIGKET-FFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299 ET F+N + K ++A + K + +R A + Sbjct: 196 GRPLLLRDDHETRVFLNAHGYPLTRQGIWKKMKEWVSEAKIKKEVTPQTMRYSFAVHLIE 255 Query: 300 AGATAHELMATYGWKTVDQAETY 322 GA + G+ + + Y Sbjct: 256 NGADVQLIQEILGYNAMKALQPY 278 >gi|91227527|ref|ZP_01261864.1| tyrosine recombinase [Vibrio alginolyticus 12G01] gi|91188551|gb|EAS74843.1| tyrosine recombinase [Vibrio alginolyticus 12G01] Length = 310 Score = 119 bits (299), Expect = 6e-25, Method: Composition-based stats. Identities = 36/278 (12%), Positives = 93/278 (33%), Gaps = 21/278 (7%) Query: 68 PTTLKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV--- 123 P +L+ + + + L+++++ +++ + + + + + + Sbjct: 10 PNSLQKPLERFYEFLRSEKGLSLHTQRNYKQQLETMAQHLAEMGLKDWSQVDAGWVRQLA 69 Query: 124 ---ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 SS L+S+R F + + + ++ NP V P++K + +++ Sbjct: 70 GKGMREGMKASSLATRLSSLRSFFDFLILRGEMSANPAKGVSAPRKKRPLPKNLDVDEVS 129 Query: 181 QFKSF---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE 236 Q + R E + +GLR ++ V+ +Q ++ K V Sbjct: 130 QLLEVNEDDPLAVRDRAMMELMYGAGLRLAELVGVDVRDVQLRSGELRVIGKGDKERKVP 189 Query: 237 --------LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSA 286 + + G+ F++ +++ K V + S Sbjct: 190 FSGMATEWVGKWLRVRGDLAAPGEPALFVSKLGTRISHRSVQKRMAEWGQKQSVASHISP 249 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R AT ++ + G + + + YT Sbjct: 250 HKLRHSFATHMLESSNNLRAVQELLGHENISTTQIYTH 287 >gi|238918092|ref|YP_002931606.1| site-specific tyrosine recombinase XerC [Edwardsiella ictaluri 93-146] gi|238867660|gb|ACR67371.1| tyrosine recombinase XerC, putative [Edwardsiella ictaluri 93-146] Length = 300 Score = 119 bits (299), Expect = 6e-25, Method: Composition-based stats. Identities = 41/277 (14%), Positives = 90/277 (32%), Gaps = 20/277 (7%) Query: 68 PTTLKWLISEYRKSAH-WGSLAVNSRISFESYFDQ---IIRKSGDFDYRKITTKHIRSGV 123 P +L + + + L+ + ++ ++ + G D+ + T +RS V Sbjct: 2 PESLSTPVVAFLQMMRVERQLSPRTVETYRRQLAASVALLLEGGLCDWTALDTVRVRSLV 61 Query: 124 ESRKHT---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 + P+S L+++R W V + + NP V P++ + +D+ Sbjct: 62 ARSRRQGLEPASLALRLSALRSFLDWQVSRGALTANPAKGVSAPRQGRHLPKNLDVDDVN 121 Query: 181 QFKSFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVE 236 + + + R E + GLR S+ +H K + Sbjct: 122 RLLDIDEGDTLAVRDRAMLEVMYGGGLRLSELVGLDCRHADLTTGEVWVLGKGSKERRLP 181 Query: 237 LPDGFMKLLAM-------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAH 287 + ++ L + F++ +++ F K GV + H Sbjct: 182 VGREAVRWLQKWLSLRLSLQPQDDALFVSRLGGRISPRSVQKRFAEWGVKQGVTSHIHPH 241 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 +R AT ++ + G + + YT Sbjct: 242 KLRHSFATHMLESSGDLRAVQELLGHANLSTTQIYTH 278 >gi|51892621|ref|YP_075312.1| recombinase [Symbiobacterium thermophilum IAM 14863] gi|51856310|dbj|BAD40468.1| recombinase [Symbiobacterium thermophilum IAM 14863] Length = 356 Score = 119 bits (299), Expect = 6e-25, Method: Composition-based stats. Identities = 39/247 (15%), Positives = 85/247 (34%), Gaps = 26/247 (10%) Query: 109 FDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168 +T + + ++ ++ + + + L+ +R +K+ VR + V NP V PK + Sbjct: 89 RAVNHLTIRSYLAFLQRQEFSRRTIARKLSCLRSFYKYLVRADLVPTNPVAGVHTPKLER 148 Query: 169 EGIRPWTKEDM----QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFS 223 +E++ Q + G + R E L +GLR + + + + Sbjct: 149 RLPVFLDEEEIGGLLSQPDTHTPLGLRDRALLELLYATGLRVGELVALNRGDIDYSEGWV 208 Query: 224 IKTQKTGTIITVELPDGFMKLL-------------------AMTPIGKETFFINNDKQKM 264 I K V + ++ L P K+ F+N ++ Sbjct: 209 IVWGKGRKERAVPVGSEALQALGHYLRDGWPVLRARAPAAEQSLPEAKQPLFLNKLGGRL 268 Query: 265 NATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 + ++ +++ S H +R AT + GA + G ++ + Y Sbjct: 269 SDRSVRRLLDRYVSQLALSRQISPHKIRHTFATHMLNHGADLRAVQEMLGHASLSTTQIY 328 Query: 323 TKGADRI 329 T + Sbjct: 329 THVTTQR 335 >gi|296140077|ref|YP_003647320.1| tyrosine recombinase XerD [Tsukamurella paurometabola DSM 20162] gi|296028211|gb|ADG78981.1| tyrosine recombinase XerD [Tsukamurella paurometabola DSM 20162] Length = 324 Score = 119 bits (298), Expect = 6e-25, Method: Composition-based stats. Identities = 43/273 (15%), Positives = 83/273 (30%), Gaps = 34/273 (12%) Query: 85 GSLAVNSRISFESYFDQIIR---KSGDFDYRKITTKHIRSGVESRKHT--------PSSA 133 A N+ S+ D+ + G D +T+ + + + + SSA Sbjct: 32 RGAAANTLSSYRRDLDRYREYLVELGIDDLASVTSTQVSGFLVALREGSDGRPPLAASSA 91 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW------- 186 + L ++R L ++A + A + V P + + + + Sbjct: 92 ARSLIAVRGLHRFAAAEGLTASDVAREVRPPAPAKRLPKALSIDTVIALLEAAGGDGESD 151 Query: 187 -SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFMKL 244 + R E L G R S+ V + + K G V + + Sbjct: 152 TPSRLRDRALLELLYSCGARISEVTALDVDDIDVQSRSVVLMGKGGKQRVVPIGRPALAA 211 Query: 245 LAM---------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-----KSAHGVR 290 + F+N +++ A +AG++ S H +R Sbjct: 212 IEAYLVRGRPSLVKKSNPALFLNVRGGRLSRQSAWQVLATAAERAGIDTDAVHVSPHTLR 271 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYT 323 AT + GA + G +V + YT Sbjct: 272 HSFATHLLEGGADVRVVQELLGHASVTTTQVYT 304 >gi|219852288|ref|YP_002466720.1| integrase family protein [Methanosphaerula palustris E1-9c] gi|219546547|gb|ACL16997.1| integrase family protein [Methanosphaerula palustris E1-9c] Length = 292 Score = 119 bits (298), Expect = 6e-25, Method: Composition-based stats. Identities = 41/279 (14%), Positives = 102/279 (36%), Gaps = 17/279 (6%) Query: 68 PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI----------IRKSGDFDYRKITTK 117 ++ I Y + + + S+ + G D R++ T Sbjct: 3 KSSFVEWIDRYHSYMQMRNYSEKTIQSYIRVVRLFGAYLIDRGATFDQVGGADDRRLITG 62 Query: 118 HIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177 ++ + + ++ + + ++++ +++ Q VA+NP ++RPK K + +R Sbjct: 63 YLSALSQEHGYSAKTLHRIISTLSSFYRFLYAQGAVAVNPVTGIDRPKIKRQELRYLKHR 122 Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII-TVE 236 + + + +L + +G+R S+ C ++H+ + +I+ + G I TV Sbjct: 123 QVLKLIESMPS-VRDQLVVRMIYATGVRVSELCGISIEHIDFDDLTIRIRGKGDKIRTVF 181 Query: 237 LPDGFMKLLAMTPIGK--ETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSA 294 + + +L+ + + FF+ ++ F+ A + H +R A Sbjct: 182 IDEETCRLMEIYAGDRIFGPFFVGQQGHPLSPRTVQHLFEVYAP---PGVTPHTIRHSYA 238 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 + + G ++ E Y R G+ Sbjct: 239 SELYKRSKNLRVVQENLGHSSIKTTEIYLHTDLDERQGV 277 >gi|153004979|ref|YP_001379304.1| tyrosine recombinase XerD [Anaeromyxobacter sp. Fw109-5] gi|152028552|gb|ABS26320.1| tyrosine recombinase XerD [Anaeromyxobacter sp. Fw109-5] Length = 298 Score = 119 bits (298), Expect = 6e-25, Method: Composition-based stats. Identities = 42/267 (15%), Positives = 90/267 (33%), Gaps = 24/267 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDF------DYRKITTKHIRSGVESRKHTPSSAIQFLT 138 LA NS + + + +I + + R +P S + L+ Sbjct: 19 KGLAENSVEGYLRDLRRYVEHLDALGIGAWERVGRIEIQAHLGELVRRGLSPRSQARALS 78 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS----FWSEGSQPRL 194 ++R L + ++ ++ ++ P+ + + +++ + + + G + R Sbjct: 79 AIRSLHRLLFAEKLTPVDAGDELDAPRPGRKLPELLSHDEIARLLASPDPRSAAGLRDRA 138 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFMKLLAM------ 247 E L +GLR S+ G+ + + K V + + + Sbjct: 139 MLELLYATGLRVSELVSLGLNDVNLETRVLVARGKGNKERIVPVGAPAAEAVKAYLAVGR 198 Query: 248 ----TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAG 301 + F++ ++ F+ A AG+ + S H +R AT + G Sbjct: 199 ERLLRGRRSKDLFVSPRGGRLTRQGFAKLLGRHARAAGIRRRISPHKLRHSFATHLLEGG 258 Query: 302 ATAHELMATYGWKTVDQAETYTKGADR 328 A + A G V + YT DR Sbjct: 259 ADLRAVQAMLGHADVSTTQIYTH-VDR 284 >gi|323495291|ref|ZP_08100372.1| site-specific tyrosine recombinase XerC [Vibrio brasiliensis LMG 20546] gi|323310468|gb|EGA63651.1| site-specific tyrosine recombinase XerC [Vibrio brasiliensis LMG 20546] Length = 308 Score = 119 bits (298), Expect = 6e-25, Method: Composition-based stats. Identities = 39/279 (13%), Positives = 94/279 (33%), Gaps = 27/279 (9%) Query: 77 EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK--------ITTKHIRSGVESRKH 128 EY +S L+++++ +++ + + ++ + + + K Sbjct: 21 EYLRSE--KGLSLHTQRNYKQQLETMAHHLVHLGLKEWQQVDAGWVRQIASKGMRDGMKA 78 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF--- 185 SS L+S+R F + + + +A NP V P++K + +++ Q Sbjct: 79 --SSIATRLSSLRSFFDFLILRGEMAANPAKGVSAPRKKRPLPKNLDVDEVGQLLEVNED 136 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE-------- 236 + R E + +GLR ++ V+ + + ++ K V Sbjct: 137 DPLAVRDRAMMELMYGAGLRLAELVSVNVKDVSLSSGELRVIGKGDKERKVPFAGMATEW 196 Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294 + ++ + F++ +++ K V + S H +R A Sbjct: 197 VTKWLKVRSSLAKSDETALFVSKLGVRISHRNVQKRMAEWGQKQSVASHISPHKLRHSFA 256 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 T ++ + G + + + YT D L Sbjct: 257 THMLESSNNLRAVQELLGHENISTTQIYTH-LDFQHLAD 294 >gi|325002510|ref|ZP_08123622.1| site-specific tyrosine recombinase XerD [Pseudonocardia sp. P1] Length = 307 Score = 119 bits (298), Expect = 6e-25, Method: Composition-based stats. Identities = 50/282 (17%), Positives = 86/282 (30%), Gaps = 31/282 (10%) Query: 74 LISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH--------IRSGVE 124 ++ +Y A N+ S+ D+ + D + Sbjct: 7 VVEDYLGHLAVERGRAQNTLRSYRLDLDRYVAHLADAGIDDLGRVRETDVAGFVTALRTG 66 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 R SSA + L ++R L ++AV + V + V P + T + + Q + Sbjct: 67 ERPLAASSAARALAAVRGLHRFAVLEGTVPADVAAGVAPPSLPSRLPTALTVDQVDQLLA 126 Query: 185 FW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPD 239 G + R E L +G R S+ A + L + K V + Sbjct: 127 GCVADGPTGLRDRALLELLYSTGGRISEIVGADLDDLDPGARTILLHGKGDKQRIVPVGR 186 Query: 240 GFMKL-----------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN----- 283 + LA G +N +M+ +A A +G+ Sbjct: 187 PALAAVDAYRVRARPDLAGRGTGSPALLLNARGGRMSRQSAWHALRAAAEASGLGPAVVA 246 Query: 284 -KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 S H +R AT GA + G +V + YT Sbjct: 247 AVSPHTLRHCFATHLLSGGADVRVVQELLGHASVATTQIYTH 288 >gi|167751366|ref|ZP_02423493.1| hypothetical protein EUBSIR_02352 [Eubacterium siraeum DSM 15702] gi|167655612|gb|EDR99741.1| hypothetical protein EUBSIR_02352 [Eubacterium siraeum DSM 15702] Length = 476 Score = 119 bits (298), Expect = 6e-25, Method: Composition-based stats. Identities = 53/316 (16%), Positives = 108/316 (34%), Gaps = 39/316 (12%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFE-SYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129 I + ++ +L + +R +E ++ II + G +++ ++ K Sbjct: 74 FGDWIDFWYQTYCRHTLRITTRTDYENRIYNHIIPEIGKIPLNRMSQSDLQQFYAKEKTD 133 Query: 130 PSS----------AIQFLTSM----RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175 + + + + R + AV+ + NP + + P +K ++ T Sbjct: 134 GRKLHAKTYGKGLSDRTIRGIHANCRTALQRAVQDGLIRTNPAVCCKLPPKKAREMQVLT 193 Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQ------ 227 + ++ +F E L F L +G+R + L I+ Q Sbjct: 194 QNEILRFLHQAKEEGYYEL-FLLELGTGMRRGEILALKWSDLNFATGELRIERQVYIIKA 252 Query: 228 -------KTGTII-TVELPDGFMKLLAMTPIGKETFFI----NNDKQKMNATQFSIWFKA 275 KT I TV LP +K L ++ ++ ++ + N + + Sbjct: 253 EVIISAPKTKASIRTVILPPSLLKTLVAYKETVDSEWMFPSPTDNGRPRNPSSVRKRLQL 312 Query: 276 KATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGAD-RIRLG 332 +AG K H +R AT++ + G L A G + + Y+ D R Sbjct: 313 ILERAGCKKVRFHDLRHTFATMALENGMDIKTLSAMIGHVSAETTLNIYSHITDTMQRQA 372 Query: 333 IKNSRRISSVVDSDDP 348 + R D+ P Sbjct: 373 AVHIDRKIGGTDARMP 388 >gi|153835738|ref|ZP_01988405.1| tyrosine recombinase XerC [Vibrio harveyi HY01] gi|148867607|gb|EDL66909.1| tyrosine recombinase XerC [Vibrio harveyi HY01] Length = 313 Score = 119 bits (298), Expect = 6e-25, Method: Composition-based stats. Identities = 36/278 (12%), Positives = 92/278 (33%), Gaps = 21/278 (7%) Query: 68 PTTLKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV--- 123 P +L+ + + + L+++++ +++ + + + + + Sbjct: 10 PNSLQKPLERFYEFLRSEKGLSLHTQRNYKQQLETMAHHLAEMGLKDWSQVDAGWVRQLA 69 Query: 124 ---ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 SS L+S+R F + + + ++ NP V P++K + +++ Sbjct: 70 GKGMREGMKASSLATRLSSLRSFFDFLILRGEMSANPAKGVSAPRKKRPLPKNLDVDEVN 129 Query: 181 QFKSF---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE 236 Q + R E + +GLR ++ V+ +Q ++ K V Sbjct: 130 QLLEVNEDDPLAVRDRAMMELMYGAGLRLAELVSVDVRDVQLRSGELRVIGKGDKERKVP 189 Query: 237 --------LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSA 286 + + G+ F++ +++ K V + S Sbjct: 190 FSGMATEWVGKWLRVRGDLAAPGEPALFVSKLGTRISHRSVQKRMAEWGQKQSVASHISP 249 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R AT ++ + G + + + YT Sbjct: 250 HKLRHSFATHMLESSNNLRAVQELLGHENISTTQIYTH 287 >gi|312875471|ref|ZP_07735474.1| putative tyrosine recombinase XerC [Lactobacillus iners LEAF 2053A-b] gi|325912823|ref|ZP_08175201.1| putative tyrosine recombinase XerC [Lactobacillus iners UPII 60-B] gi|311088982|gb|EFQ47423.1| putative tyrosine recombinase XerC [Lactobacillus iners LEAF 2053A-b] gi|325477816|gb|EGC80950.1| putative tyrosine recombinase XerC [Lactobacillus iners UPII 60-B] Length = 307 Score = 119 bits (298), Expect = 6e-25, Method: Composition-based stats. Identities = 36/279 (12%), Positives = 95/279 (34%), Gaps = 26/279 (9%) Query: 72 KWLISEYRKS-AHWGSLAVNSRISFESYFDQ----IIRKSGDFDYRKITTKHIR---SGV 123 + Y + + ++N+ ++ + + G D+ K++++ I + Sbjct: 5 DDFLKLYYNYLKNERNYSINTCKAYMDDLSEARTFFVENGGFIDWIKLSSRDIEIFIQYL 64 Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 +K S+ + ++++R +++ ++ + +NP + + ++M + Sbjct: 65 AQKKDKRSTQSRKISTLRSFYRFLNKRNIIPVNPVELISLRGDHKKLPEFLYNDEMVKVL 124 Query: 184 S----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIITVELP 238 G + E +G+R S+ ++ + + + K V Sbjct: 125 KSISTTTPLGLRNMALLELFYATGMRVSEIANLKLEQIDFELNLILVHGKGNKDRYVAFG 184 Query: 239 DGFMKLLAMT-----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS-- 285 + L F+N++ ++ + K AGV+ S Sbjct: 185 EEAKTALNNYLVEARKKILLHKTDYGYVFLNSNGNRITSRGLEYIIKNIFLNAGVSASVH 244 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R AT + GA + G +++ + YT Sbjct: 245 PHMLRHTFATQMLNNGADLRTVQELLGHESISTTQIYTH 283 >gi|242373543|ref|ZP_04819117.1| tyrosine recombinase XerC [Staphylococcus epidermidis M23864:W1] gi|242348906|gb|EES40508.1| tyrosine recombinase XerC [Staphylococcus epidermidis M23864:W1] Length = 286 Score = 119 bits (298), Expect = 6e-25, Method: Composition-based stats. Identities = 38/265 (14%), Positives = 97/265 (36%), Gaps = 20/265 (7%) Query: 85 GSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGVE---SRKHTPSSAIQFLTS 139 + + + S+ Q S + K R+ + S ++ + +++ Sbjct: 6 RNFSEYTLKSYHDDLVQFNEFLNSEHLELTTFEYKDARNYLSYLYSNNLKRTTVSRKIST 65 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF----KSFWSEGSQPRLA 195 +R +++ + Q+ +NP + + PK++ + + +E+M+ + ++G + R+ Sbjct: 66 LRTFYEYWMTQDESVVNPFVQLVHPKKEQYLPQFFYEEEMEALFRTVEQDRTKGMRDRVI 125 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE--------LPDGFMKLLA 246 E L +G+R S+ ++ + N+ +K K + + + Sbjct: 126 IELLYATGIRVSELVNIKIKDIDMNLPGVKVLGKGNKERFIPFGEFCKQSIERYLDEFQP 185 Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATK-AGV-NKSAHGVRKFSATISADAGATA 304 + E +N + + + AGV + H +R AT + GA Sbjct: 186 RKAVDHEYLIVNMKGEPITERGVRYVLNDVVKRTAGVTDIHPHKLRHTFATHLLNQGADL 245 Query: 305 HELMATYGWKTVDQAETYTKGADRI 329 + + G + YT +++ Sbjct: 246 RTVQSLLGHVNLSTTGRYTHVSNQQ 270 >gi|94266109|ref|ZP_01289825.1| Phage integrase [delta proteobacterium MLMS-1] gi|93453327|gb|EAT03764.1| Phage integrase [delta proteobacterium MLMS-1] Length = 379 Score = 119 bits (298), Expect = 6e-25, Method: Composition-based stats. Identities = 62/349 (17%), Positives = 127/349 (36%), Gaps = 28/349 (8%) Query: 10 FVTKERTRHGKIIY-YFRKGHG--RRIRLPYPHESTFIPAYMSA--LTGSTPKREYINSP 64 F+ + R+ GK + +R GHG R+ ++ + +F A +A L E + Sbjct: 33 FILEVRSTGGKTYHLRYRDGHGKLRQHKIGGADDISFDKAQAAATRLRSRVVLGEDPLAE 92 Query: 65 RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF----DQIIRKSGDFDYRKITTKHIR 120 R+ + L + + S++S F + ++ G+ +I + Sbjct: 93 RQVKKQVPTLEE--FAHGKYLPYVKGYKRSWKSDFGYLKNHLLPLFGNQHLDQIKQAEVI 150 Query: 121 SGVESRKHTP---SSAIQFLTSMRVLFKWAVRQEY--VAINPCLSVERPKRKTEGIRPWT 175 K ++ + + +R +F A + + NP V + R T Sbjct: 151 ELHHGMKARGYALATCNRQVILLRYIFNLARKWKIPGADNNPTTGVVLFETNNGRERYLT 210 Query: 176 KEDMQQFKSFW--SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGT 231 +++ + K+ SE +Q + LL G R S+ + + S + K+G Sbjct: 211 EDEAARLKAALESSENTQLKYIVSLLLLLGCRKSELLNSRWEDFDLARRSWRIPLSKSGK 270 Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAK---ATKAGV-NKSAH 287 V L +++LA P N F F++ KAG+ + H Sbjct: 271 ARYVPLSTAALEVLASIPRLSPYVVPN----PKTLQPFVSVFRSWDTARKKAGLPDVRMH 326 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336 +R A+ ++G + +E+ G + + Y+ ++ L +S Sbjct: 327 DLRHSFASFLVNSGRSIYEVSQLLGHSQLKTTQRYSHLSNDTLLAAVDS 375 >gi|59800504|ref|YP_207216.1| putative site-specific recombinase [Neisseria gonorrhoeae FA 1090] gi|194097632|ref|YP_002000668.1| putative site-specific recombinase [Neisseria gonorrhoeae NCCP11945] gi|239998167|ref|ZP_04718091.1| putative site-specific recombinase [Neisseria gonorrhoeae 35/02] gi|240013349|ref|ZP_04720262.1| putative site-specific recombinase [Neisseria gonorrhoeae DGI18] gi|240015794|ref|ZP_04722334.1| putative site-specific recombinase [Neisseria gonorrhoeae FA6140] gi|240079931|ref|ZP_04724474.1| putative site-specific recombinase [Neisseria gonorrhoeae FA19] gi|240112137|ref|ZP_04726627.1| putative site-specific recombinase [Neisseria gonorrhoeae MS11] gi|240114883|ref|ZP_04728945.1| putative site-specific recombinase [Neisseria gonorrhoeae PID18] gi|240117087|ref|ZP_04731149.1| putative site-specific recombinase [Neisseria gonorrhoeae PID1] gi|240120422|ref|ZP_04733384.1| putative site-specific recombinase [Neisseria gonorrhoeae PID24-1] gi|240122724|ref|ZP_04735680.1| putative site-specific recombinase [Neisseria gonorrhoeae PID332] gi|240124914|ref|ZP_04737800.1| putative site-specific recombinase [Neisseria gonorrhoeae SK-92-679] gi|254492944|ref|ZP_05106115.1| tyrosine recombinase xerC [Neisseria gonorrhoeae 1291] gi|260441302|ref|ZP_05795118.1| putative site-specific recombinase [Neisseria gonorrhoeae DGI2] gi|268594018|ref|ZP_06128185.1| tyrosine recombinase xerC [Neisseria gonorrhoeae 35/02] gi|268596071|ref|ZP_06130238.1| tyrosine recombinase xerC [Neisseria gonorrhoeae FA19] gi|268598196|ref|ZP_06132363.1| tyrosine recombinase xerC [Neisseria gonorrhoeae MS11] gi|268600541|ref|ZP_06134708.1| tyrosine recombinase xerC [Neisseria gonorrhoeae PID18] gi|268602774|ref|ZP_06136941.1| tyrosine recombinase xerC [Neisseria gonorrhoeae PID1] gi|268681323|ref|ZP_06148185.1| tyrosine recombinase xerC [Neisseria gonorrhoeae PID332] gi|268683494|ref|ZP_06150356.1| tyrosine recombinase xerC [Neisseria gonorrhoeae SK-92-679] gi|291044658|ref|ZP_06570367.1| tyrosine recombinase xerC [Neisseria gonorrhoeae DGI2] gi|293397766|ref|ZP_06641972.1| tyrosine recombinase XerC [Neisseria gonorrhoeae F62] gi|75356483|sp|Q5FAI3|XERC_NEIG1 RecName: Full=Tyrosine recombinase xerC gi|254799349|sp|B4RNW5|XERC_NEIG2 RecName: Full=Tyrosine recombinase xerC gi|59717399|gb|AAW88804.1| putative site-specific recombinase [Neisseria gonorrhoeae FA 1090] gi|193932922|gb|ACF28746.1| putative site-specific recombinase [Neisseria gonorrhoeae NCCP11945] gi|226511984|gb|EEH61329.1| tyrosine recombinase xerC [Neisseria gonorrhoeae 1291] gi|268547407|gb|EEZ42825.1| tyrosine recombinase xerC [Neisseria gonorrhoeae 35/02] gi|268549859|gb|EEZ44878.1| tyrosine recombinase xerC [Neisseria gonorrhoeae FA19] gi|268582327|gb|EEZ47003.1| tyrosine recombinase xerC [Neisseria gonorrhoeae MS11] gi|268584672|gb|EEZ49348.1| tyrosine recombinase xerC [Neisseria gonorrhoeae PID18] gi|268586905|gb|EEZ51581.1| tyrosine recombinase xerC [Neisseria gonorrhoeae PID1] gi|268621607|gb|EEZ54007.1| tyrosine recombinase xerC [Neisseria gonorrhoeae PID332] gi|268623778|gb|EEZ56178.1| tyrosine recombinase xerC [Neisseria gonorrhoeae SK-92-679] gi|291011552|gb|EFE03548.1| tyrosine recombinase xerC [Neisseria gonorrhoeae DGI2] gi|291611712|gb|EFF40781.1| tyrosine recombinase XerC [Neisseria gonorrhoeae F62] gi|317163457|gb|ADV06998.1| putative site-specific recombinase [Neisseria gonorrhoeae TCDC-NG08107] Length = 305 Score = 119 bits (298), Expect = 6e-25, Method: Composition-based stats. Identities = 34/278 (12%), Positives = 86/278 (30%), Gaps = 24/278 (8%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD-------YRKITTKHIRSGV 123 Y ++ + ++ ++ +++ + ++ + + + Sbjct: 6 FAAYFDAYLENIVREGKSEHTVAAYRRDLEELFALLAQMPSEDAGGVPQDLSRRDFTAAL 65 Query: 124 ESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 + + L++ R W V++ + +P ++ PK+ + +E + Sbjct: 66 RRLSQRGLDGRTLARKLSAWRQYCAWLVKRGLMRADPTADIKPPKQPERVPKALPQEWLN 125 Query: 181 QFKSF-----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIIT 234 + + FE + SGLR S+ + + + G Sbjct: 126 RMLDLPVDGGDPLAVRDHALFELMYGSGLRVSEIHGLNADDVYLDEAWVHVTGKGRKQRQ 185 Query: 235 VELP----DGFMKL--LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK--AGVNKSA 286 V L + L T + F + +++ Q ++ A + G + S Sbjct: 186 VPLTGKSVEALKNYLPLRQTASDGKALFTGRNGTRLSQRQIQKRLESWAAQYGDGRHVSP 245 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R A A + G ++ + YTK Sbjct: 246 HMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTK 283 >gi|163783966|ref|ZP_02178933.1| recombinase [Hydrogenivirga sp. 128-5-R1-1] gi|159880762|gb|EDP74299.1| recombinase [Hydrogenivirga sp. 128-5-R1-1] Length = 291 Score = 119 bits (298), Expect = 7e-25, Method: Composition-based stats. Identities = 51/285 (17%), Positives = 105/285 (36%), Gaps = 31/285 (10%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE---SRKHTPSSAIQFLTSMR 141 + N+ ++ Q + +GD D IT I S++ S+ + L + Sbjct: 15 ADKSPNTVKNYNVDLKQFAQIAGDKDVESITKADIAKFRMVLQSKRLKSSTIARKLACLN 74 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY 201 F++ + E ++ +P RPK + T E++++ +L + LL Sbjct: 75 SFFQYLIDLELISSSPITKSHRPKVSNKIPSSLTHEEIKRVIENAD-NIMDKLIIKILLT 133 Query: 202 SGLRCSDSCRAGVQHL------------------QNNIFSIKT-QKTGTIITVELPDG-F 241 +GLR ++ +++ + +I IK K V L + Sbjct: 134 TGLRSAEILDIRRENIIIERNGQLFNIDYIENLQEGDIAYIKVLGKGNKERIVPLSENVL 193 Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAG 301 +L K + ++ KAGV H +R +AT++ +G Sbjct: 194 EELFNYLKKYKVSPIF-----PISYHSLWRRIINIGKKAGVILHPHKLRHTAATLALQSG 248 Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSD 346 A + G + Y K ++ +L I+ ++++S+ + SD Sbjct: 249 AELRVIQELLGHASPLTTARYAK-VNQKQL-IEATKKLSNSIFSD 291 >gi|149191484|ref|ZP_01869733.1| site-specific tyrosine recombinase XerC [Vibrio shilonii AK1] gi|148834672|gb|EDL51660.1| site-specific tyrosine recombinase XerC [Vibrio shilonii AK1] Length = 313 Score = 119 bits (298), Expect = 7e-25, Method: Composition-based stats. Identities = 39/268 (14%), Positives = 89/268 (33%), Gaps = 22/268 (8%) Query: 77 EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV------ESRKHTP 130 EY +S L+++++ ++ + + + T Sbjct: 19 EYLRSE--KGLSLHTQRNYRQQLETMGMHLHEMGIGAWTQVDAGWVRQLAGKGMREGMKA 76 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---S 187 SS L+S+R F + + + + NP V P+++ + +++ Q Sbjct: 77 SSIATRLSSLRSFFDFLILRGELTANPAKGVSAPRKQRPLPKNLDVDEVNQLLEVDEDDP 136 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVEL----PDGFM 242 + R E + +GLR ++ V+HL + ++ K V + Sbjct: 137 LAVRDRAMMEMMYGAGLRLAEMVSIDVKHLNLSSGELRVIGKGNKERKVPFSGYATEWAK 196 Query: 243 KLLAM----TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATI 296 K L + G+ F++ +++ K + + S H +R AT Sbjct: 197 KWLKVRGELAKPGEVALFVSKLGTRISHRSVQKRMAEWGQKQSLASHVSPHKLRHSFATH 256 Query: 297 SADAGATAHELMATYGWKTVDQAETYTK 324 ++ + G + + + YT Sbjct: 257 MLESSNNLRAVQELLGHENISTTQIYTH 284 >gi|309379484|emb|CBX21850.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 334 Score = 119 bits (298), Expect = 7e-25, Method: Composition-based stats. Identities = 37/281 (13%), Positives = 84/281 (29%), Gaps = 24/281 (8%) Query: 68 PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD-------YRKITTKHIR 120 P Y ++ + ++ ++ +++ + ++ + Sbjct: 32 PDGFAAHFDAYLENIVREGKSEHTVAAYRRDLEELFALLAQMPSEAEGGVPQDLSRRDFT 91 Query: 121 SGVES---RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177 + + R + + L+S R W V++ + +P + PK+ + +E Sbjct: 92 AALRRLSQRGLNARTLARKLSSWRQYCAWLVKRGLMRTDPTAGISPPKQPQRIPKALPQE 151 Query: 178 DMQQFKSF-----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-T 231 + + + FE + SGLR S+ + + + G Sbjct: 152 WLNRMLDLPVDGGDPLAVRDHALFELMYGSGLRVSEIHGLNADDVYLDEAWVHVTGKGRK 211 Query: 232 IITVELPDGFMKL------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK--AGVN 283 V L + L T + F + +++ Q A G + Sbjct: 212 QRQVPLTGKSAEALKNYLPLRQTASDGKALFTGRNGTRLSQRQIQKRLAQWAAINGDGRH 271 Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 S H +R A A + G ++ + YTK Sbjct: 272 VSPHMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTK 312 >gi|224543273|ref|ZP_03683812.1| hypothetical protein CATMIT_02473 [Catenibacterium mitsuokai DSM 15897] gi|224523806|gb|EEF92911.1| hypothetical protein CATMIT_02473 [Catenibacterium mitsuokai DSM 15897] Length = 297 Score = 119 bits (298), Expect = 7e-25, Method: Composition-based stats. Identities = 40/269 (14%), Positives = 88/269 (32%), Gaps = 23/269 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH---TPSSAIQFLTSMR 141 L+ N+ + D+D +K HI + K +S + + S+R Sbjct: 17 RGLSENTVQGYIRDIKAFYEYI-DYDIKKFDLSHIDAYFCELKDDGYKVTSIRRKIVSLR 75 Query: 142 VLFKWAVR-QEYVAINPCLSVERPKRKTEGIRPWTKEDM----QQFKSFWSEGSQPRLAF 196 ++ R + + + PK + + + E++ + G + + Sbjct: 76 QYNEFLSRTRGM--QDIMTQYDLPKTDKKLPKVLSLEEIIKVIKSIDDSNPAGKRNKAMM 133 Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFMKLLAMTPIGKETF 255 L+ +G+R S+ + + +++ ++ G + L + + +F Sbjct: 134 LLLINTGMRISELVHLEINDINHSVSNVSVVGKGNKERLIPLDEETCSYVYSYMQNDRSF 193 Query: 256 FIN---------NDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATA 304 F ND ++M F + AGV + + H +R AT + Sbjct: 194 FNKKNNQWLFMMNDGRRMTRENFYNILQKLVIGAGVRDHFTPHMLRHTFATTLLENHCDL 253 Query: 305 HELMATYGWKTVDQAETYTKGADRIRLGI 333 + G + + YT R L Sbjct: 254 RSIQVMLGHQDISTTTIYTHVTHRQILDD 282 >gi|325576773|ref|ZP_08147388.1| site-specific tyrosine recombinase XerC [Haemophilus parainfluenzae ATCC 33392] gi|325160979|gb|EGC73097.1| site-specific tyrosine recombinase XerC [Haemophilus parainfluenzae ATCC 33392] Length = 295 Score = 119 bits (298), Expect = 7e-25, Method: Composition-based stats. Identities = 46/271 (16%), Positives = 100/271 (36%), Gaps = 20/271 (7%) Query: 74 LISEYRKSAH-WGSLAVNSRISFESYFDQIIR---KSGDFDYRKITTKHIRSGV-ESRKH 128 L+++Y L+ ++ +++ + I+ + G ++++ +R + ESRKH Sbjct: 4 LLNQYWDYLRIERQLSPHTLTNYQHQLNAILAILAEKGIQHWQQVNPSVVRLILAESRKH 63 Query: 129 --TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS-- 184 S L+++R F + V Q + +NP + PK+ + E +Q+ S Sbjct: 64 GLKEKSLALRLSALRQFFSYLVHQGQMKVNPATGISAPKQSKHLPKNIDAEQVQKLLSND 123 Query: 185 -FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPD--- 239 + R E + SGLR S+ + + + ++ K V Sbjct: 124 SKDPIDLRDRAMMELMYSSGLRLSELQGLNLNSINTRVREVRVIGKGNKERIVPFGRYAS 183 Query: 240 -GFMKLLAMTP---IGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFS 293 + L + P + F++ ++ + + G+N + H +R Sbjct: 184 HAIQQWLKVRPLFNPKDDAIFVSQQGNRLTHRSIQKRMENWGIRQGLNSHLNPHKLRHSF 243 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTK 324 AT +A + + G + + YT Sbjct: 244 ATHMLEASSDLRAVQELLGHSNLSTTQIYTH 274 >gi|253577473|ref|ZP_04854788.1| integrase [Paenibacillus sp. oral taxon 786 str. D14] gi|251843173|gb|EES71206.1| integrase [Paenibacillus sp. oral taxon 786 str. D14] Length = 326 Score = 119 bits (298), Expect = 7e-25, Method: Composition-based stats. Identities = 39/280 (13%), Positives = 82/280 (29%), Gaps = 22/280 (7%) Query: 71 LKW--LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK------ITTKHIRSG 122 KW L+S + + +L + + + ++ + G + + + + I Sbjct: 17 FKWSELVSLFLQDCRSRNLTNETIRRYRNGLKKLQQHLGSQNLKLNDLTDLLLSHRIIPS 76 Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 + + L ++ FK+ N + K KT +T +Q+ Sbjct: 77 MLDEGLALRTINCNLCILKEFFKFLYEDGIAEANIAAELRPLKVKTSLTHTFTDGHLQRL 136 Query: 183 KSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVE 236 G + + LL +G+R + V ++ I K V Sbjct: 137 FVQPDRSTFTGYRNYVIMLVLLETGIRLKELANLRVTNVFLDEGTLRIIQGKGRKARMVP 196 Query: 237 LPD----GFMKLL-AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA---GVNKSAHG 288 + + + + + ++ D + A GV S H Sbjct: 197 IQHVAAFELKQYMFERGTLETDRLWVTLDNHPFYEAGIRVMISRYCIAANIQGVQCSCHT 256 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 R A G L + G + ++ E Y + R Sbjct: 257 FRHTFAKKYLMNGGDVFTLKSILGHERIETTEMYVELFSR 296 >gi|124006143|ref|ZP_01690979.1| integrase, site-specific recombinase [Microscilla marina ATCC 23134] gi|123988320|gb|EAY27973.1| integrase, site-specific recombinase [Microscilla marina ATCC 23134] Length = 296 Score = 119 bits (298), Expect = 7e-25, Method: Composition-based stats. Identities = 47/286 (16%), Positives = 95/286 (33%), Gaps = 29/286 (10%) Query: 74 LISEYRKSAHWGSLAVNSRISFES-------YFDQIIRKSGDFDYRKITTKHIRSGVESR 126 +I + K + N+ S+ Y +I R + + Sbjct: 1 MIKSFLKHILAKRYSQNTITSYNHDLQQFSTYLQEIHRLEEPEHADHNMIRSWVLQLTEE 60 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 K +S + + +++ +K+ Q ++ NP ++ K + +E M Q + Sbjct: 61 KANVTSINRKIATLKSFYKYLQNQGFIKKNPAQRLKPMKVPKKAPIFVEEEKMLQLLNTV 120 Query: 187 S-----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-----TQKTGTIITVE 236 EG + + E L +G+R S+ +QH+ I+ K + Sbjct: 121 QYPAGIEGLRDKFTIEILYGTGMRLSELINLQIQHVDFQKLRIRIPEKNNLKKEKERNIS 180 Query: 237 LPDGFMKLLAMTPIGKE---------TFFINNDKQKMNATQFSIWFKAKATK--AGVNKS 285 + + LL K+ + ++ + K KS Sbjct: 181 VAKPLLDLLQQYEKSKQQTYGKLVHNHVLVTDEGKPAYPMLIYRTVKKYLQLITDQEKKS 240 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIR 330 H +R AT + GA HE+ G T+ + Y+ + D+I+ Sbjct: 241 PHVLRHSFATHLLNKGADLHEVKDMLGHTTLSTTQAYSHNSLDQIK 286 >gi|313633457|gb|EFS00282.1| tyrosine recombinase XerC [Listeria seeligeri FSL N1-067] Length = 300 Score = 119 bits (298), Expect = 7e-25, Method: Composition-based stats. Identities = 40/281 (14%), Positives = 100/281 (35%), Gaps = 27/281 (9%) Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK------ITTKHIRSG 122 + L +Y S + + N+ ++E+ R + + + + + Sbjct: 5 GKWEQLFLDYLHSER--NYSENTSTAYENDLIDFRRFLNEQAITEYSQVTFLDVRIYLTE 62 Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ- 181 ++ + + ++ + ++S+R + + +R+ + NP V K + + + E+M+ Sbjct: 63 LKQKSFSRTTVARKISSLRSFYTFLLRENVITENPFTYVSHAKNQLRLPKFFYSEEMEAL 122 Query: 182 ----FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVE 236 ++ + + R+ E L +G+R S+ + + SI K V Sbjct: 123 FQVVYEDNETLTLRDRVLLEVLYGTGIRVSECAGILLTDIDKTYQSILIRGKGNKERYVP 182 Query: 237 L-----------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS 285 D ++L+ ++ IN+ + + +KA + + Sbjct: 183 FGAYAEDAITDYLDSRIELMKHFNKTHDSLLINHYGEPLTTRGIRYCLTKIISKASLTRK 242 Query: 286 --AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R AT + GA + G ++ + YT Sbjct: 243 IHPHMLRHTFATDLLNNGADMRTVQELLGHASLSSTQIYTH 283 >gi|157368433|ref|YP_001476422.1| site-specific tyrosine recombinase XerC [Serratia proteamaculans 568] gi|157320197|gb|ABV39294.1| tyrosine recombinase XerC [Serratia proteamaculans 568] Length = 303 Score = 119 bits (298), Expect = 7e-25, Method: Composition-based stats. Identities = 42/277 (15%), Positives = 97/277 (35%), Gaps = 20/277 (7%) Query: 68 PTTLKWLISEYRKSAH-WGSLAVNSRISFES---YFDQIIRKSGDFDYRKITTKHIR--S 121 +L+ + + + L+ +++S+ + ++ G ++ + +R + Sbjct: 5 AASLQQPVDAFLRYLKVERQLSPLTQLSYSRQLQALMALAQEIGVTEWPLLDAAKVRQLA 64 Query: 122 GVESRKHTPSSAIQF-LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 R SS++ L+++R W V Q + NP + P+ + ++M Sbjct: 65 ARSKRAGLQSSSLALRLSALRSFLDWQVSQGMLIANPAKGIRTPRSGRHLPKNIDVDEMN 124 Query: 181 QFKSFW---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT------ 231 Q + + R E + +GLR S+ +H+ I G+ Sbjct: 125 QLLNIDLNDPLAVRDRAMLEVMYGAGLRLSELVGLDCRHVDLAAGEIWVLGKGSKERKLP 184 Query: 232 --IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAH 287 V + ++ + + + F++N ++++ F K GVN H Sbjct: 185 VGRTAVTWLEHWLAMRDLFGPSDDAMFLSNQGKRISTRNVQKRFAEWGVKQGVNSHIHPH 244 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 +R AT ++ + G + + YT Sbjct: 245 KLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTH 281 >gi|332171924|gb|AEE21178.1| tyrosine recombinase XerC [Glaciecola agarilytica 4H-3-7+YE-5] Length = 298 Score = 119 bits (298), Expect = 7e-25, Method: Composition-based stats. Identities = 41/272 (15%), Positives = 101/272 (37%), Gaps = 17/272 (6%) Query: 70 TLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE---S 125 +L+ L+ +Y + +LA S +++ F I + + ++ +H+R + Sbjct: 6 SLQPLLDKYFDYLKYERNLAAKSIENYQRQFASICQTLSISSWSALSVEHVRQVLNHARR 65 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ---F 182 + +P S L+++R + V E ++ NP +V+ PK+ + ++M Q F Sbjct: 66 QGLSPRSIALRLSALRGYCAYLVELEVLSSNPAKAVQAPKQGKPLPKQLNVDEMHQLLDF 125 Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD--- 239 + + E GLR ++ + LQ++ K + + Sbjct: 126 DDDSLLAIRDKAMLELTYSCGLRLAELADLNLNSLQDDGQLRVMGKGSKERLLPVGKKAL 185 Query: 240 -----GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKF 292 + + F++ +++++ Q + + A + +++ H +R Sbjct: 186 TCVGQWLKVRGELADGNEPALFLSKHRRRISHRQIAKRMQLWAKQQHLDQDINPHKLRHS 245 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTK 324 AT ++ + G + + YT Sbjct: 246 FATHILESSGDLRGVQELLGHANLSTTQVYTH 277 >gi|270294768|ref|ZP_06200969.1| conserved hypothetical protein [Bacteroides sp. D20] gi|270274015|gb|EFA19876.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 294 Score = 119 bits (298), Expect = 7e-25, Method: Composition-based stats. Identities = 41/263 (15%), Positives = 96/263 (36%), Gaps = 23/263 (8%) Query: 85 GSLAVNSRISFESYFDQI----IRKSGDFDYRKITTKHIRSGVESRKHTP---SSAIQFL 137 + + + + + ++ GD + + +R + S ++ + L Sbjct: 15 RNYSKGTVEYYRADILELQRFGEEMLGDLTPSDVDAELVREWIASLMDKGLASNTINRKL 74 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS-----EGSQP 192 +S+R +K+ +R+ VA++P V PK+K + +M + EG + Sbjct: 75 SSVRTYYKFLLRRGKVAVDPLRKVTGPKKKKPLPVFLREGEMNRLLDDMDFGEGFEGCRD 134 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLA----- 246 + E +G+R S+ + + + +K T K + + + + Sbjct: 135 HMIIEMFYATGMRLSELIGLDDKDVDFSASLVKVTGKRNKQRLIPFDEELGRSMREYVNV 194 Query: 247 ---MTPIGKETFFINNDKQKMNATQFSIWFKA--KATKAGVNKSAHGVRKFSATISADAG 301 P+ + FF+ + +++ + + K +S H +R AT + G Sbjct: 195 RNEAVPVRSDAFFVRKNGKRLYRSIVACLVKRNLSKVVTVKKRSPHVLRHTFATAMLNNG 254 Query: 302 ATAHELMATYGWKTVDQAETYTK 324 A + G +++ E YT Sbjct: 255 ADLGSIKELLGHESLATTEVYTH 277 >gi|227889898|ref|ZP_04007703.1| site-specific recombinase XerD [Lactobacillus johnsonii ATCC 33200] gi|268319571|ref|YP_003293227.1| tyrosine recombinase XerC [Lactobacillus johnsonii FI9785] gi|227849342|gb|EEJ59428.1| site-specific recombinase XerD [Lactobacillus johnsonii ATCC 33200] gi|262397946|emb|CAX66960.1| tyrosine recombinase XerC [Lactobacillus johnsonii FI9785] Length = 307 Score = 119 bits (298), Expect = 7e-25, Method: Composition-based stats. Identities = 41/279 (14%), Positives = 107/279 (38%), Gaps = 26/279 (9%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQ----IIRKSGDFDYRKITTKHIRSGVESR 126 LI +++ ++ + + N+ S+ + ++ G + ++ ++ + +++ Sbjct: 6 DKLIKQFQDYLNYERNYSKNTVNSYLNDLNEAKEFFKENGGFSGWDQVKSRDVEIFLQNL 65 Query: 127 K---HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 + ++ + ++S+R +++ V++E + +P ++ + + + + +++M+Q Sbjct: 66 ATQNRSRTTQARKMSSLRSFYRFLVKREVLDNDPMQTISLRLGEKKLPQFFYEKEMRQVF 125 Query: 184 SFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELP 238 + + R FE +G+R S+ + + + + K V Sbjct: 126 DSLAGHEKLVVRNRAMFELFYATGMRLSEMASLKLDQIDFDLKIILVHGKGNKDRYVPFG 185 Query: 239 DGFMKLL-------AMTPIGKE----TFFINNDKQKMNATQFSIWFKAKATKAGVNKS-- 285 L + +GK F+NN QK+ + KAGV Sbjct: 186 KDAANALKEYCDESRLDLLGKNEDLGYVFLNNRGQKLTGRGIEYIMQQVFIKAGVGGKVH 245 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R AT + GA + G +++ + YT Sbjct: 246 PHMLRHSFATEMLNNGADLRSVQELLGHESLSTTQIYTH 284 >gi|149913845|ref|ZP_01902377.1| tyrosine recombinase XerD [Roseobacter sp. AzwK-3b] gi|149812129|gb|EDM71960.1| tyrosine recombinase XerD [Roseobacter sp. AzwK-3b] Length = 323 Score = 119 bits (298), Expect = 7e-25, Method: Composition-based stats. Identities = 53/320 (16%), Positives = 112/320 (35%), Gaps = 48/320 (15%) Query: 72 KWLISEYRKS-AHWGSLAVNSRISFESYF---DQIIRKSGDFDYRKITTKHIRSGV---E 124 + IS + ++ A A N+ ++ D + GD + + + + + Sbjct: 5 RHWISAFLEAQAAELGAAQNTLQAYARDLSDFDAWLASQGDT-IEQADQSRVEAYLVHCD 63 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 ++ ++ + L++++ L+++A + NP ++++ P R + + +++++ Sbjct: 64 AQGLARATRARRLSAIKQLYRFAFEERLRDDNPAITIKGPGRSRKLPKTLSEKEVDLLLG 123 Query: 185 FWSEGSQPRLA---------FEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIIT 234 + + R A E L +G+R S+ V + N + K G Sbjct: 124 --AARTHGRSATDRVRNTCLMELLYATGMRVSELVALPVAAARGNPQMLLIRGKGGKERM 181 Query: 235 VELPDGFMKLL---------------AMTPIGKETFFINNDK-QKMNATQFSIWFKAKAT 278 V L ++ G F ++ K + +F + K A Sbjct: 182 VPLSPDARDVMVEWLKLRDAADAAARKAGKPGSPFLFPSSGKIGHLTRHRFYMLIKELAV 241 Query: 279 KAGV---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG-ADRIR---- 330 GV + H +R AT GA + G V E YT +R+R Sbjct: 242 AGGVSPDKVTPHTLRHAFATHLLANGADLRAIQTLLGHADVATTEIYTHVLEERLRELVQ 301 Query: 331 ----LGIKNSRRISSVVDSD 346 L + + R+ SD Sbjct: 302 EHHPLAVASRRKSGGSTSSD 321 >gi|330444894|ref|ZP_08308549.1| tyrosine recombinase XerC [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328489204|dbj|GAA03046.1| tyrosine recombinase XerC [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 297 Score = 119 bits (298), Expect = 7e-25, Method: Composition-based stats. Identities = 35/268 (13%), Positives = 87/268 (32%), Gaps = 22/268 (8%) Query: 77 EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV------ESRKHTP 130 EY +S L+++++ +++ +I + + Sbjct: 10 EYLRSER--ELSLHTQQNYKRQLTRIAEQLVELKVESWQQVDAGWVRQIASKGMRDGLKA 67 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---WS 187 SS L+++R F + V Q + NP V P++ + ++M Q Sbjct: 68 SSLAMRLSALRSFFDFLVHQNVLKANPAKGVAAPRKSRPLPKNLDVDEMNQLLDVNEDDP 127 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------ELP 238 + R E + +GLR S+ ++++ + ++ G + + Sbjct: 128 LAIRDRAMMELMYGAGLRLSELVGIDLRNISLSKGDLRVIGKGDKERIVPFSGLAREWVA 187 Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATI 296 ++ ++ F++ +++ K V + + H +R AT Sbjct: 188 KWLKLRDSIAQADEQALFVSKLGHRISTRNVQKRMAEWGQKQAVSSHINPHKLRHSFATH 247 Query: 297 SADAGATAHELMATYGWKTVDQAETYTK 324 ++ + G + + YT Sbjct: 248 MLESSGDLRAVQELLGHANLSTTQIYTH 275 >gi|163851935|ref|YP_001639978.1| tyrosine recombinase XerD [Methylobacterium extorquens PA1] gi|163663540|gb|ABY30907.1| tyrosine recombinase XerD [Methylobacterium extorquens PA1] Length = 328 Score = 119 bits (298), Expect = 7e-25, Method: Composition-based stats. Identities = 45/273 (16%), Positives = 85/273 (31%), Gaps = 28/273 (10%) Query: 85 GSLAVNSRISFESYFDQIIRK-----SGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139 A N+ ++ D + + + + + +E R SSA + L+ Sbjct: 27 RGAAANTLAAYRRDLDDYLGYLAQGGIDPEEAQAEQVRAYIASLEPRGLKASSAARRLSC 86 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP------- 192 +R ++ + Y +P V P+R + + ++ + + E + Sbjct: 87 IRGFHRFLYAEGYAETDPTAPVAAPRRAKGLPKVLSVAEVDRLLATARERVEAAGDDRAE 146 Query: 193 -------RLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKL 244 E L +GLR S+ + + K G V L D + Sbjct: 147 ARAAARMLCLLELLYATGLRVSELVALPRSAAATRERYLVVKGKGGRERLVPLTDLAREA 206 Query: 245 LAM-----TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATI 296 + T G F ++ + F+ K A AG+ S H +R A+ Sbjct: 207 MRTHVAHLTAEGSWLFPAESESGHLTRQAFARDLKTAAAAAGLRTDRVSPHVLRHAFASH 266 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRI 329 GA + G + + YT D Sbjct: 267 LLQNGADLRIVQELLGHADISTTQIYTHVLDER 299 >gi|126661477|ref|ZP_01732531.1| tyrosine recombinase xerC [Cyanothece sp. CCY0110] gi|126617235|gb|EAZ88050.1| tyrosine recombinase xerC [Cyanothece sp. CCY0110] Length = 285 Score = 119 bits (298), Expect = 7e-25, Method: Composition-based stats. Identities = 52/264 (19%), Positives = 93/264 (35%), Gaps = 24/264 (9%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP- 130 WL + S H L N+ F+S + + I+ ++S K Sbjct: 15 SWLFD--KNSNHTRQLYNNTLKQFQS--------FSSEPLSNVKIEDIQLWIDSLKLRGY 64 Query: 131 --SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI-RPWTKEDMQQFKSFWS 187 + + ++ LF + Y+ N V+ PK K R D+++ Sbjct: 65 SLHTIRVKVLCLKSLFSYCFDVGYLPFNVAARVKPPKPKETLSQRLLNVADIEKLIRATK 124 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHL---QNNIFSIKTQKTGTIITVELPDGFMKL 244 + L + GLR S++ R Q L ++ ++ K G V +P G Sbjct: 125 TH-RDFLMLSLIYACGLRISEASRLTWQDLQPRKDGGQALIDGKGGQSRVVLIPVGLWAK 183 Query: 245 LAM----TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISA 298 L + F + ++++ ++ K A AG+N SAH +R AT S Sbjct: 184 LMAFQSLRSPHTDAVFYSRRQKELARSRIHQIVKQAALDAGINPKTSAHWLRHAHATHSL 243 Query: 299 DAGATAHELMATYGWKTVDQAETY 322 + G L + G + + Y Sbjct: 244 ENGCDISLLQQSLGHSDITTTQRY 267 >gi|326203021|ref|ZP_08192887.1| integrase family protein [Clostridium papyrosolvens DSM 2782] gi|325986667|gb|EGD47497.1| integrase family protein [Clostridium papyrosolvens DSM 2782] Length = 329 Score = 119 bits (298), Expect = 7e-25, Method: Composition-based stats. Identities = 40/226 (17%), Positives = 88/226 (38%), Gaps = 20/226 (8%) Query: 124 ESRKHTPSSAIQFLTSMRVLFKWA-VRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 R +T + + + S++ F + + + + INP + +E PK R ++ ++ Sbjct: 88 NKRDNTSHARARKVASLKSFFNYLSTKAKLLDINPTIELESPKILKRLPRYLNFDESKKL 147 Query: 183 -----KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL 237 ++ + L G+R S+ + ++++N ++ K G ++ L Sbjct: 148 LTSVTEANHEYSVRDYAIITIFLNCGIRLSELVGINLYNIKDNTLTV-FGKGGKERSIPL 206 Query: 238 ----PDGFMKLLAMTPI----GKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSA 286 + + P+ K FI+ Q+++ K +AG++ S Sbjct: 207 NKACLQAIEDYMKIRPVNGLKDKSALFISRRNQRISKESVQKIVKRYIKEAGLDPQRYST 266 Query: 287 HGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGADRIRL 331 H +R +AT+ G L G +++ E YT D+ +L Sbjct: 267 HKLRHTAATLMYKYGNVDIRALQEILGHESISTTEIYTH-LDQQQL 311 >gi|58617409|ref|YP_196608.1| integrase/recombinase [Ehrlichia ruminantium str. Gardel] gi|58417021|emb|CAI28134.1| Integrase/recombinase [Ehrlichia ruminantium str. Gardel] Length = 318 Score = 119 bits (298), Expect = 7e-25, Method: Composition-based stats. Identities = 40/269 (14%), Positives = 88/269 (32%), Gaps = 30/269 (11%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDF--------DYRKITTKHIRSGVESR---KHTPSSA 133 ++N+ +S+ D++I D + +R SR + Sbjct: 27 KRYSLNTVVSYVRDLDKLIEFLHKSTGCSVTLNDLVHVKIGDLRKWFASRYQCGVEAVTN 86 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS------ 187 + L+++R F++ R Y+ + RP K + ++ +++ Sbjct: 87 ARSLSALRNFFRYLSRMYYIDSQAVFYLSRPHLKKTLPKVLAGSHIEIILNYYKQLPQNW 146 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP----DGFMK 243 + L SG R S+ Q ++ + I + + V + + Sbjct: 147 VDMRNFAIMMLLYGSGFRISEVVNLKFQDVREDRLFITGKGNKERV-VPILSVVYKSLCQ 205 Query: 244 LLAMTP------IGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSAT 295 + P + F+ +K++ T F+ + + G+ +AH R AT Sbjct: 206 YIECCPYYLGARPNNQYIFVGVRGKKLSRTHFANIMQKLRAEMGLPDITTAHTFRHSFAT 265 Query: 296 ISADAGATAHELMATYGWKTVDQAETYTK 324 GA + G ++ + YT Sbjct: 266 HLFIGGADIRSVQELLGHTSLSTTQIYTH 294 >gi|307692278|ref|ZP_07634515.1| Phage integrase [Ruminococcaceae bacterium D16] Length = 527 Score = 119 bits (298), Expect = 8e-25, Method: Composition-based stats. Identities = 54/297 (18%), Positives = 103/297 (34%), Gaps = 38/297 (12%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESRKH- 128 + ++E+ ++ L +++ +E + +I G+ ++T + K Sbjct: 72 FRDWLNEWYQNDAKPRLRPTTQLQYEGFLQHHLIPGLGEIPLNQLTQGEFQQFFRHMKEN 131 Query: 129 ---------TPSSAIQFLTSMRVLF----KWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175 P A + + S + AV ++ + NP + + P K + ++ T Sbjct: 132 GRKVQVERYGPGMADRSVRSCHAVCQMALDKAVEEKLIHANPAVGCKLPPLKGKEMKILT 191 Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ---------------NN 220 E++Q+F L F L +G+R + L Sbjct: 192 LEEIQRFLIRAKAEGMYEL-FLLELTTGMRRGELLALRWDDLDFVTGKLHIDKQVYPVGG 250 Query: 221 IFSIKTQKTGTI-ITVELPDGFMKLLAMTPIGKETFFI----NNDKQKMNATQFSIWFKA 275 I KT T+ LP ++LLA G + + +Q ++ + Sbjct: 251 KLVISEPKTKAANRTIILPPAMVELLAEYKKGVFSDLMFPSRTKPEQPIDPCYVRKRLQV 310 Query: 276 KATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIR 330 +AG NK H +R AT+S + G L G + + TYT D +R Sbjct: 311 ILKRAGCNKVRFHDLRHTFATMSLENGMDIKTLSTIIGHVSAETTLNTYTHITDDMR 367 >gi|229150814|ref|ZP_04279026.1| DNA integration/recombination/invertion protein [Bacillus cereus m1550] gi|228632603|gb|EEK89220.1| DNA integration/recombination/invertion protein [Bacillus cereus m1550] Length = 369 Score = 119 bits (298), Expect = 8e-25, Method: Composition-based stats. Identities = 48/312 (15%), Positives = 109/312 (34%), Gaps = 38/312 (12%) Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVE 124 TLK ++ + + S+ ++ + ++ + +I G K+ HI+ + Sbjct: 60 PSKVTLKGYLNHWLEIKS-MSIEKSTFAGYRAFINQHVIPSIGMVALHKLNVMHIQKCYK 118 Query: 125 SRKHTPSSAIQFLTSMRVL---FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 + S+ L R+L AV+Q ++ NP E PK++ I+ WT+E++++ Sbjct: 119 NAIDKGISSNSILLMHRILKSALNLAVKQNIMSRNPADFAEIPKKEKTPIQTWTEEEVKK 178 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--------------NNIFSIKTQ 227 F + S+ S+ + + + +G+R + Q + +N + Sbjct: 179 FLA-HSQESRYHIGYLLAITTGMRLGEVLGLRWQDIDFEKHTVTINQTSGHDNKIKKTAK 237 Query: 228 KTGTIITVELPDGFMKLLAMTPI--------------GKETFFINNDKQKMNATQFSIWF 273 + T+ +P+ + L I ++ N + + F F Sbjct: 238 TNSSKRTIPVPNETIAALKKHKILINKEKLRFGSAYLDQDLINCNEFGRIIKRAHFRKSF 297 Query: 274 KAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRL 331 K G+ + H +R AT+ G + G + Y+ + Sbjct: 298 IRMTHKVGIKEIKFHDLRHTHATLLLKQGVNPKIISERLGHTDISMTLSVYSHVL--PNM 355 Query: 332 GIKNSRRISSVV 343 + + + Sbjct: 356 QEEAVKNFGKSI 367 >gi|159037538|ref|YP_001536791.1| site-specific tyrosine recombinase XerD [Salinispora arenicola CNS-205] gi|157916373|gb|ABV97800.1| tyrosine recombinase XerD [Salinispora arenicola CNS-205] Length = 345 Score = 119 bits (298), Expect = 8e-25, Method: Composition-based stats. Identities = 47/278 (16%), Positives = 87/278 (31%), Gaps = 39/278 (14%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKIT-------TKHIRSGVESRKHTP----SSA 133 LA N+ S+ + + ++ H+ P SSA Sbjct: 48 RGLAANTLASYRRDLGRYLDTLASVGVTELASVDPGQVEVHLARLRAGDDGHPPLAASSA 107 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW------- 186 + +++R L ++A+R+ ++P + R +D+ + Sbjct: 108 ARAASAVRGLHRFALREGLAGVDPSRDLRPAAPPRRLPRALPVDDVLKLLEAAGSVAATG 167 Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFM 242 + R EFL +G R S++ V L + ++ K G V + + Sbjct: 168 DGAPLALRDRALLEFLYGTGARISEAVGVAVDDLDTDTGAVLLRGKGGRNRLVPIGGYAV 227 Query: 243 KLLA-----------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK------S 285 L G F+N ++ + A +AG+ S Sbjct: 228 AALRGYLVRARPGLAAAGRGTPAVFLNARGGPLSRQGAWAILRGAARRAGLPGVGAEAVS 287 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 H +R AT D GA + G +V + YT Sbjct: 288 PHTLRHSYATHLLDGGADVRVVQELLGHASVTTTQVYT 325 >gi|307262299|ref|ZP_07543948.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306868062|gb|EFM99889.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 336 Score = 119 bits (298), Expect = 8e-25, Method: Composition-based stats. Identities = 36/259 (13%), Positives = 89/259 (34%), Gaps = 19/259 (7%) Query: 85 GSLAVNSRISFESYFDQIIR---KSGDFDYRKITTKHIRSGV---ESRKHTPSSAIQFLT 138 + ++ +++ + ++G ++++ + +R + + S L Sbjct: 53 KQASQHTLSNYQRQLLAVSDMLSQAGISTWQEVNSATVRWIIAQSNKQGLGAKSIALRLV 112 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS---FWSEGSQPRLA 195 ++R F + +RQE +++NP + ++ PK + E + Q + + Sbjct: 113 ALRQWFSYLIRQEKMSVNPAVGIKAPKASKRLPKNIDAEQIGQLLTSDSHEPSDLRDLAM 172 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMT------ 248 E + SGLR S+ + + ++ K V + ++ L Sbjct: 173 MELMYSSGLRLSELQGLDLGDMDLAGREVRLLGKGNKERIVPIGSKALEALNRWLAVRNQ 232 Query: 249 -PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAH 305 F+N +++ + + K G+ + H +R AT +A Sbjct: 233 FKPQDNAVFLNKRGGRLSHRSIQLVMQKWGEKQGLESHLHPHKLRHSFATHMLEASGDLR 292 Query: 306 ELMATYGWKTVDQAETYTK 324 + G + + YT Sbjct: 293 AVQELLGHSNLATTQIYTH 311 >gi|83590631|ref|YP_430640.1| Phage integrase [Moorella thermoacetica ATCC 39073] gi|83573545|gb|ABC20097.1| Phage integrase [Moorella thermoacetica ATCC 39073] Length = 390 Score = 119 bits (298), Expect = 8e-25, Method: Composition-based stats. Identities = 57/360 (15%), Positives = 116/360 (32%), Gaps = 44/360 (12%) Query: 26 RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWG 85 +G RR+ L + + AL +++ T++ ++ + Sbjct: 30 HEGKQRRLTLYGKSKKEVLEKLTQALY----QQQNGGFIEPSKITVEQWLNRWLTDYAKP 85 Query: 86 SLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFLTSMR 141 L ++ S+E+ +I G +K+ I+ S+ +P+ + Sbjct: 86 HLRQSTWESYETVLRLHVIPTLGSIPLKKLQPADIQRLYASKLESGLSPTRVRYIHVVLH 145 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY 201 A + NP + + P+ + ++P E +++F + AF L Sbjct: 146 EAMSQARESGLLLQNPTEAAKPPRHPKKKVQPLNPEQVKRFLETAKQ-DPLYPAFLLALG 204 Query: 202 SGLRCSDSCRAGVQHLQN--NIFSIKTQ-------------KT-GTIITVELPDGFMKLL 245 +GLR + Q L I ++ KT + + LP + L Sbjct: 205 TGLRRGEILGLRWQDLDLQKGILQVRQSLIRTREGLKFEEPKTEKSRRQIPLPPSVVAAL 264 Query: 246 AMTPI--------------GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVR 290 + F + + + F+ +F KAG+ H +R Sbjct: 265 KRHKAWVNQNKLILGPDYEDHDLVFPVENGRPRDPKGFAEYFNRLLDKAGLPHIRLHDLR 324 Query: 291 KFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSVV-DSDDP 348 AT+ G + G TV + Y+ L K + RI ++ ++P Sbjct: 325 HTHATLLLLEGVHPKVVQERLGHSTVSITLDIYSHIL--PGLQEKAAERIDGLLQPKENP 382 >gi|328948447|ref|YP_004365784.1| Tyrosine recombinase xerC [Treponema succinifaciens DSM 2489] gi|328448771|gb|AEB14487.1| Tyrosine recombinase xerC [Treponema succinifaciens DSM 2489] Length = 307 Score = 119 bits (298), Expect = 8e-25, Method: Composition-based stats. Identities = 46/274 (16%), Positives = 92/274 (33%), Gaps = 29/274 (10%) Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIRKSG-DFDYRKITTKHIR---SGVESRKHTPSSA 133 Y S L+ N+ +S+ G D +T + +R + RK++ +S Sbjct: 15 YLGSVR--GLSENTLLSYRQDLAHFCEFFGNDKSAEGLTLEDLRLFVGYLSRRKYSVASI 72 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF-----KSFWSE 188 + ++++R LF + + Y++ N ++ ++ R ++ ++ K Sbjct: 73 NRIISAVRGLFAYLKKFGYISKNVSYELKCLRQPKTLPRFMSQVEIDNVCRQPEKKELLW 132 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHL-QNNIFSIKTQKTGTIITVELPDG------- 240 S+ + FE + SG R S+ Q + +I T K V Sbjct: 133 ASRDKAIFEMMYSSGCRVSELASLKFQDFTSDFRSAIVTGKGKKDRRVYFEQDARNSLML 192 Query: 241 -FMKLLAMTPIGK-------ETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVR 290 + A P + F++ ++A G + S H R Sbjct: 193 YLKERKARFPQAEKGCAGEVSRIFLSQKGTALSAHGIWYIVSRYTGIEGTGSHVSPHAFR 252 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK 324 AT ++GA + G + + YT Sbjct: 253 HTFATGMLNSGADIRIVQELLGHSNISTTQRYTH 286 >gi|330962350|gb|EGH62610.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv. maculicola str. ES4326] Length = 290 Score = 119 bits (298), Expect = 8e-25, Method: Composition-based stats. Identities = 38/259 (14%), Positives = 93/259 (35%), Gaps = 19/259 (7%) Query: 85 GSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIR---SGVESRKHTPSSAIQFLT 138 ++ ++ ++ ++ +K+G + + +H+R + + + S + L+ Sbjct: 7 RQVSPHTLEAYRRDLGKVLAFCQKAGLSSWTNLDIQHLRSFTARQHQQGQSSRSLARMLS 66 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRL 194 ++R +K+ R+ +P + PK + + + Q E + + Sbjct: 67 AVRGFYKYLNREGICQHDPANGLSPPKGERRLPKTLDTDRAAQLLDGAVEEDFLAQRDQA 126 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV--------ELPDGFMKLLA 246 E L SGLR S+ + L ++ G+ V + + ++ L A Sbjct: 127 ILELLYSSGLRLSELTGLNLDQLDLRAGLVQVLGKGSKTRVLPVGSKARKALESWLPLRA 186 Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAK-ATKAGVNKSAHGVRKFSATISADAGATAH 305 +T + F++ +++ KA + G N H +R A+ ++ Sbjct: 187 LTNPQDDAVFVSQHGKRLGPRAVQNRVKAAGERELGQNLHPHMLRHSFASHLLESSQDLR 246 Query: 306 ELMATYGWKTVDQAETYTK 324 + G + + YT Sbjct: 247 AVQELLGHADIKTTQIYTH 265 >gi|330997394|ref|ZP_08321245.1| putative tyrosine recombinase XerC [Paraprevotella xylaniphila YIT 11841] gi|329570768|gb|EGG52484.1| putative tyrosine recombinase XerC [Paraprevotella xylaniphila YIT 11841] Length = 293 Score = 119 bits (298), Expect = 8e-25, Method: Composition-based stats. Identities = 38/264 (14%), Positives = 93/264 (35%), Gaps = 25/264 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFD----YRKITTKHIRSGVESR---KHTPSSAIQFL 137 + ++ + + + D + + +R + S T ++ + L Sbjct: 14 RNYSLRTVEEYRDDLNAFESYYKKVDSTLSWETMDGDVVRDWMVSMMEAGRTATTVNRRL 73 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ-----FKSFWSEGSQP 192 +++R +++ +R++++ ++P +++ PK+K + +M + F G + Sbjct: 74 SALRTFYRYLLRRDWIKVDPVRNIQGPKKKKPLPVFLKESEMNRLLDGDFFGNDFLGKRD 133 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMTPI 250 +L +G+R S+ Q + + + T K V D LL Sbjct: 134 KLIVNTFYVTGIRLSELTSLNNQDVDMWGGVIRV-TGKRNKQRIVPFGDELEALLTAYLD 192 Query: 251 GKETF--------FINNDKQKMNATQFSIWFKAK--ATKAGVNKSAHGVRKFSATISADA 300 K + F++ +++ + + +S H +R AT + Sbjct: 193 EKSSLGLEDGGAMFVDEKGERLTNVKVRNLVRHYLGMVTTQKKRSPHVLRHTFATSMLNH 252 Query: 301 GATAHELMATYGWKTVDQAETYTK 324 A L G +++ E YT Sbjct: 253 HADLESLKELLGHESISTTEIYTH 276 >gi|302038834|ref|YP_003799156.1| putative phage integrase [Candidatus Nitrospira defluvii] gi|300606898|emb|CBK43231.1| putative Phage integrase [Candidatus Nitrospira defluvii] Length = 361 Score = 119 bits (298), Expect = 8e-25, Method: Composition-based stats. Identities = 55/320 (17%), Positives = 114/320 (35%), Gaps = 15/320 (4%) Query: 17 RHGKIIYYFRKGHGRRIR-LPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75 + K+ + +GR++R + A ++ + + + + ++ T + ++ Sbjct: 5 KRNKVWWMSFIHNGRQVRRSTDTTDRRLAEAILAKVRVKLIEGRHFDRLEEENRTFQEMM 64 Query: 76 SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK---HTPSS 132 Y A SR+ ++ + ++ G +I+ K + S R+ P++ Sbjct: 65 ERYVAERATLK-APKSRLRDQAALNHLLPVFGQKLLSEISPKQLASYKAQRRIEQAAPAT 123 Query: 133 AIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191 + L +R F A+R+ E+ NP V + + E R T E+ + + S + Sbjct: 124 INKELQLVRHAFNLAMREWEWCRENPMHRVSLEQVRNEVDRWLTPEEEDRLMAASSPWLR 183 Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELP----DGFMKLL 245 F L +G+R + Q + + K GT T+ L + Sbjct: 184 E--IIVFALNTGMRQGEILNLQWQDVDFSRGTLIVMQSKNGTRRTIPLNTKVYELLASKQ 241 Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATA 304 A T + + F + F +AG+ + H +R AT G Sbjct: 242 AATGLSRGPVFKTPLGNLLQVRFLVREFCEARNRAGIPDFRFHDMRHTFATRLVQRGVDL 301 Query: 305 HELMATYGWKTVDQAETYTK 324 +++ G KT + Y Sbjct: 302 YKVQRLLGHKTNLMTQRYAH 321 >gi|94264969|ref|ZP_01288740.1| Tyrosine recombinase XerC [delta proteobacterium MLMS-1] gi|93454572|gb|EAT04850.1| Tyrosine recombinase XerC [delta proteobacterium MLMS-1] Length = 339 Score = 119 bits (298), Expect = 8e-25, Method: Composition-based stats. Identities = 42/251 (16%), Positives = 87/251 (34%), Gaps = 29/251 (11%) Query: 103 IRKSGDFDYRKITTKHIRSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160 + + D ++ +R+ V S ++ SS + L+++R F++ + + +P + Sbjct: 70 EDPAAELDVAQLDATRVRAFVYSLHGRNKSSSVARKLSALRSFFRFLRKNGIINDDPAAA 129 Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSEG----SQPRLAFEFLLYSGLRCSDSCRAGVQH 216 + PK + + +++ G ++ R E L +GLR S+ + Sbjct: 130 IAAPKGEGYLPVVLSVDEVFSLLEMPGAGDRFAARDRAILELLYATGLRVSELAGLDLAQ 189 Query: 217 LQ-NNIFSIKTQKTGTIITVEL-----------PDGFMKLLAMTP---------IGKETF 255 L + K V + LL T G + Sbjct: 190 LDLADGMVRVVGKGNKERLVPMGTAAVAAIEAYLPQRQVLLRQTAGQQKEGKKARGADPL 249 Query: 256 FINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGW 313 +N+ ++ + K A +AG+ S H +R AT + GA + G Sbjct: 250 LVNSRGGRLTSRSIERLVKMYAERAGIAARVSPHALRHSFATHLLEMGADLRVVQELLGH 309 Query: 314 KTVDQAETYTK 324 ++ + YT Sbjct: 310 ASLSTTQRYTH 320 >gi|227488616|ref|ZP_03918932.1| site-specific tyrosine recombinase XerC [Corynebacterium glucuronolyticum ATCC 51867] gi|227543219|ref|ZP_03973268.1| site-specific tyrosine recombinase XerC [Corynebacterium glucuronolyticum ATCC 51866] gi|227091510|gb|EEI26822.1| site-specific tyrosine recombinase XerC [Corynebacterium glucuronolyticum ATCC 51867] gi|227181028|gb|EEI62000.1| site-specific tyrosine recombinase XerC [Corynebacterium glucuronolyticum ATCC 51866] Length = 295 Score = 118 bits (297), Expect = 8e-25, Method: Composition-based stats. Identities = 38/273 (13%), Positives = 85/273 (31%), Gaps = 19/273 (6%) Query: 71 LKWLISEYRKSAHWGS-LAVNSRISFESYFDQIIRKS-GDFDYRKITTKHIRSGVESRKH 128 LI +Y + + + + S G + + S Sbjct: 6 FHELIEDYCDHLRFNEGKSEATIRGYRSDLLLACEYLNGVAGFTLTGLRAWLGEAVSAGK 65 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-- 186 + ++ + ++R WA +Q Y+ + + P + T + + Sbjct: 66 SRATLARRTAAVRSFSAWAHKQGYLEEDAARRLRVPYKSHHLPTVLTSDQAGEMMGNAGS 125 Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-----ELP 238 E + E L +G+R ++ C V + ++K G V Sbjct: 126 HSEPEFLRDSAILELLYATGMRVAELCSLDVADVDGAKNTVKVTGKGNKQRVVPFGAPAR 185 Query: 239 DGFMKLLAM------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRK 291 + + ++ T + F+ +++ Q + A GV+ + H +R Sbjct: 186 NALDQWISAGRGHFATADSGDALFLGVRGGRIDPRQVRRIVETAAANTGVDGITPHSLRH 245 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTK 324 +AT + GA + G ++ + YT Sbjct: 246 TAATHLLEGGADLRAVQEFLGHSSLQTTQIYTH 278 >gi|268592909|ref|ZP_06127130.1| tyrosine recombinase XerC [Providencia rettgeri DSM 1131] gi|291311699|gb|EFE52152.1| tyrosine recombinase XerC [Providencia rettgeri DSM 1131] Length = 309 Score = 118 bits (297), Expect = 8e-25, Method: Composition-based stats. Identities = 46/260 (17%), Positives = 83/260 (31%), Gaps = 20/260 (7%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE----SRKHTPSSAIQ--FLT 138 L+ + ++ I+ + + SRK +A L+ Sbjct: 28 RRLSPVTITNYRRQLSVIVEMLALLNIHEWQKVDATIVRNIAAKSRKSGLQAASMALRLS 87 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQPRLA 195 S+R F W V+Q + NP ++ PK K + +++ Q + + R Sbjct: 88 SLRSFFDWMVQQGELPANPAKAIHAPKSKKRLPKNMDVDEVSQLLNMDSGDPLVVRDRTM 147 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMKLLAMT------ 248 E + +GLR S+ V+HL N K V + + L Sbjct: 148 LEVMYGAGLRLSELVGLDVRHLDLNTGEVWVMGKGSKERRVPMGKTAVSWLQRWLEMREL 207 Query: 249 --PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATA 304 P F ++++ F+ K GVN H +R AT ++ Sbjct: 208 YDPEDDAVFISTQSGKRISNRNVQKRFEQWGIKQGVNSHINPHKLRHSFATHILESSGNL 267 Query: 305 HELMATYGWKTVDQAETYTK 324 + G + + YT Sbjct: 268 RGVQELLGHANLSTTQIYTH 287 >gi|288956928|ref|YP_003447269.1| integrase/recombinase [Azospirillum sp. B510] gi|288909236|dbj|BAI70725.1| integrase/recombinase [Azospirillum sp. B510] Length = 355 Score = 118 bits (297), Expect = 8e-25, Method: Composition-based stats. Identities = 47/280 (16%), Positives = 97/280 (34%), Gaps = 39/280 (13%) Query: 85 GSLAVNSRISFESYF----DQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSM 140 AVN+R+++E + ++ + V+ + P + + L++M Sbjct: 52 RGAAVNTRLAYERDLADLGRWLAQRGVALEGAGTEDLRAYLAVQGKDGAPRTVARRLSAM 111 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-----SEGSQPRLA 195 R +++ + + + +P ++ PK+ + ++ ++ S EG + Sbjct: 112 RQFYRFLLSEGRRSDDPASPLDSPKQGRPLPKILSEAEVGAMLSTAEARGGPEGLRLVAL 171 Query: 196 FEFLLYSGLRCSDSCRAGVQHL-QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET 254 E L +GLR S+ + + ++ + K G V L D + LA + Sbjct: 172 LEVLYATGLRVSELVGLPMTAIMRDGRGLLVRGKGGKERMVPLSDPALAALAAYIPVRAH 231 Query: 255 FF-------------------------INNDKQKMNATQFSIWFKAKATKAGVN---KSA 286 F I+ + + +F+ K A AG++ S Sbjct: 232 FIPPGTGAGGGGAGGEGGHSPFLFPSRISAEGY-LTRQRFAQLLKQLAIDAGIDPEKVSP 290 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 H +R AT D GA + G + + YT Sbjct: 291 HVLRHAFATHLLDHGADLRSVQKMLGHADIATTQIYTHVV 330 >gi|189184658|ref|YP_001938443.1| putative integrase [Orientia tsutsugamushi str. Ikeda] gi|189181429|dbj|BAG41209.1| putative integrase [Orientia tsutsugamushi str. Ikeda] Length = 225 Score = 118 bits (297), Expect = 8e-25, Method: Composition-based stats. Identities = 40/195 (20%), Positives = 77/195 (39%), Gaps = 8/195 (4%) Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP--R 193 L ++R +F A++ + NP L +E+ K + R + ++M +F + P R Sbjct: 1 MLATLRTMFNKAIKWGLIENNPTLGIEQHKLQARERR-LSYDEMGRFLHVLCGETTPLIR 59 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIG 251 LY+G R S+ ++ I+ I K G + L D M++L Sbjct: 60 DFALLALYTGARKSNVLEMEWDNIDFERKIWHIPKTKNGKAQNIPLTDEAMEILQARKFT 119 Query: 252 KET--FFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELM 308 E+ + + + + + KAG+ N H +R+ A+ D GA+ + Sbjct: 120 SESKWVLPSTTSASGHLERPNNSWHRVCKKAGIKNLRIHDLRRTFASCMGDVGASQRTIS 179 Query: 309 ATYGWKTVDQAETYT 323 + + +YT Sbjct: 180 IALNHISPESTISYT 194 >gi|169629452|ref|YP_001703101.1| site-specific tyrosine recombinase XerD [Mycobacterium abscessus ATCC 19977] gi|169241419|emb|CAM62447.1| Tyrosine recombinase XerD [Mycobacterium abscessus] Length = 315 Score = 118 bits (297), Expect = 8e-25, Method: Composition-based stats. Identities = 44/285 (15%), Positives = 89/285 (31%), Gaps = 36/285 (12%) Query: 75 ISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE-----SRKH 128 I Y +A N+ S+ + + D ++ + R Sbjct: 12 IQSYLDHLDVERGVAANTLSSYRRDLRRYQQHLADRKIDRLAEVCETDVSDFVVTLRRGD 71 Query: 129 --------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 + SSA + L ++R L ++A + + +V+ P + T E ++ Sbjct: 72 PANGVPELSASSAARALIAVRGLHRFAAIEGLAPTDVARAVKPPTPNRRLPKSLTVEQVE 131 Query: 181 QFKSFW-------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTI 232 + + R E L +G R S++ V + + K G Sbjct: 132 ALLNAAGGGGSDGPLDLRNRALLELLYSTGARISEAVGLDVDDVDVQARSVLLWGKGGKQ 191 Query: 233 ITVELPDGFMKLLAMTPIGK------------ETFFINNDKQKMNATQFSIWFKAKATKA 280 V + ++ L + F+N+ +++ A +A Sbjct: 192 RLVPVGRPAVEALQAYLVRGRPDLARRGRGGVPALFLNSRGGRLSRQSAWQVLADAAERA 251 Query: 281 GVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 ++ S H +R AT + GA + G +V + YT Sbjct: 252 KISAAVSPHTLRHSFATHLLEGGADVRVVQELLGHASVTTTQIYT 296 >gi|148543984|ref|YP_001271354.1| tyrosine recombinase XerD subunit [Lactobacillus reuteri DSM 20016] gi|184153379|ref|YP_001841720.1| integrase/recombinase [Lactobacillus reuteri JCM 1112] gi|194467806|ref|ZP_03073792.1| integrase family protein [Lactobacillus reuteri 100-23] gi|227364897|ref|ZP_03848942.1| tyrosine recombinase [Lactobacillus reuteri MM2-3] gi|325682478|ref|ZP_08161995.1| integrase/recombinase XerD [Lactobacillus reuteri MM4-1A] gi|148531018|gb|ABQ83017.1| tyrosine recombinase XerD subunit [Lactobacillus reuteri DSM 20016] gi|183224723|dbj|BAG25240.1| integrase/recombinase [Lactobacillus reuteri JCM 1112] gi|194452659|gb|EDX41557.1| integrase family protein [Lactobacillus reuteri 100-23] gi|227070044|gb|EEI08422.1| tyrosine recombinase [Lactobacillus reuteri MM2-3] gi|324978317|gb|EGC15267.1| integrase/recombinase XerD [Lactobacillus reuteri MM4-1A] Length = 297 Score = 118 bits (297), Expect = 8e-25, Method: Composition-based stats. Identities = 40/263 (15%), Positives = 92/263 (34%), Gaps = 25/263 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP------SSAIQFLT 138 L+ N+ +S++ +Q + D ++ S+ + ++ Sbjct: 16 RQLSDNTLMSYQRDLEQTVTYLEDRGIVDWQQVDHYLLIDLLNSLRQQGKANSTINRVIS 75 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKR--KTEGIRPWTKEDMQQFKSF----WSEGSQP 192 S+R +K+ +R + INP ++ + T+++++Q + G + Sbjct: 76 SLRQFYKYMIRHHNLTINPMEMIDHQYTFNQPPAPVILTEKEIEQLLAVPDVSTPIGLRD 135 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLL------ 245 R E + +G+R S+ + L ++ ++ T K + L +K L Sbjct: 136 RALLEIMDATGMRVSEVIALDLTALHLDVKLLQLTGKNERERMIPLSQPAVKWLTDYLDR 195 Query: 246 ---AMTPIGKET-FFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299 + ET F+N + K ++A + K + +R A + Sbjct: 196 GRPRLLRDEHETRVFLNAHGYPLTRQGIWKKMKEWVSEAKIKKEVTPQTMRYSFAVHLIE 255 Query: 300 AGATAHELMATYGWKTVDQAETY 322 GA + G+ + + Y Sbjct: 256 NGADVQLIQEILGYNAMKALQPY 278 >gi|114319227|ref|YP_740910.1| tyrosine recombinase XerC [Alkalilimnicola ehrlichii MLHE-1] gi|114225621|gb|ABI55420.1| tyrosine recombinase XerC [Alkalilimnicola ehrlichii MLHE-1] Length = 304 Score = 118 bits (297), Expect = 8e-25, Method: Composition-based stats. Identities = 48/279 (17%), Positives = 101/279 (36%), Gaps = 24/279 (8%) Query: 69 TTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIR---S 121 TL I + + L+ ++ +++ + ++G D ++ IR + Sbjct: 2 ATLDDDIRHFLHHLRYERGLSPHTLQAYQRDLTRFHHWCAENGLADRDAVSAHDIRRFAA 61 Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 + P S + L+S+R LF++ VR+ + NP V P+R + ++ + Sbjct: 62 ARHRQGLAPGSVQRTLSSLRSLFRYLVREGRLTGNPAEGVAAPRRPRRLPGVLSPDEAAR 121 Query: 182 FKSFWSE----GSQPRLAFEFLLYSGLRCSDSC--RAGVQHLQNNIFSIKTQKTGTIITV 235 E + R +E + SGLR +++ G L + + K V Sbjct: 122 LLEGSPEDDPLALRDRALYELIYSSGLRLAEAVGLDLGRLDLTEGLVEV-VGKGAKTRRV 180 Query: 236 EL----PDGFMKLLAMTP----IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--S 285 + + LA+ P + F++ +++A AT +GV + Sbjct: 181 PVGGKAREALQAWLAVRPALAGADEPAVFVSQRGGRLSARSVQARLARLATLSGVGRPVH 240 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R A+ ++ + G + + YT Sbjct: 241 PHMLRHSFASHLLESSGDLRAVQELLGHADIATTQVYTH 279 >gi|71897645|ref|ZP_00679890.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella fastidiosa Ann-1] gi|71732548|gb|EAO34601.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella fastidiosa Ann-1] Length = 277 Score = 118 bits (297), Expect = 8e-25, Method: Composition-based stats. Identities = 42/255 (16%), Positives = 86/255 (33%), Gaps = 17/255 (6%) Query: 87 LAVNSRISFESYFDQIIRKSGDFDYRKI------TTKHIRSGVESRKHTPSSAIQFLTSM 140 ++ ++ ++ +I G ++ + S R + S + L++ Sbjct: 1 MSSHTLDAYRRDIGALIAWGGQQAVGEVVALDRAQLQAFVSAEHRRGLSAKSLQRRLSAC 60 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---WSEGSQPRLAFE 197 R + W V++ ++A+NP + PK + R ++ F G + R E Sbjct: 61 RGFYTWLVKRGHIAVNPAAGLRAPKALRKLPRILDADEAVSFVQIPTDTPLGLRDRALLE 120 Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-----ELPDGFMKLLAMTPIGK 252 SGLR S+ C L + + G+ V + A + G Sbjct: 121 LFYSSGLRLSELCGLRWDGLDLDAGLVSVLGKGSRQRVVPVGSYALSALREWCASSGGGA 180 Query: 253 -ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMA 309 + F ++A + K A + G+ K H +R A+ ++ + Sbjct: 181 QQPVFPGRYGGPISARAVQVRIKQLAQRQGMAKHVHPHMLRHSFASHLLESSGDLRGVQE 240 Query: 310 TYGWKTVDQAETYTK 324 G + + YT Sbjct: 241 LLGHADITTTQIYTH 255 >gi|302035680|ref|YP_003796002.1| tyrosine recombinase xerC [Candidatus Nitrospira defluvii] gi|300603744|emb|CBK40076.1| Tyrosine recombinase xerC [Candidatus Nitrospira defluvii] Length = 317 Score = 118 bits (297), Expect = 8e-25, Method: Composition-based stats. Identities = 41/236 (17%), Positives = 76/236 (32%), Gaps = 19/236 (8%) Query: 117 KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176 + + + +S + L +R F++ VR + +NP V PK + TK Sbjct: 58 REFLAARDRTGDKKTSLARKLACLRSFFRYLVRIGQLDVNPAEDVRAPKLPKHLSQVLTK 117 Query: 177 EDMQQFKSF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-T 231 +D F G + R E L +G R S+ + + ++ + G Sbjct: 118 DDAGALMEFPGGTERVGLRDRAILETLYSTGARVSELVGMNCDDISRSEGLVRLRGKGRK 177 Query: 232 IITVELP-------DGFMKLLAMTP------IGKETFFINNDKQKMNATQFSIWFKAKAT 278 + L D + + P F N+ ++ + + Sbjct: 178 ERVIPLGIIALEAIDAYHAQIQAVPGPSSGRSDAAAVFRNSRGGRLTTRTIARIVAKYSR 237 Query: 279 KA-GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 + G H +R AT D GA + G ++ + YT A L + Sbjct: 238 QLTGGAVHPHTLRHSFATHLLDEGADLRAIQEMLGHASLSTTQKYTHLATDQLLAL 293 >gi|260893051|ref|YP_003239148.1| integrase family protein [Ammonifex degensii KC4] gi|260865192|gb|ACX52298.1| integrase family protein [Ammonifex degensii KC4] Length = 311 Score = 118 bits (297), Expect = 8e-25, Method: Composition-based stats. Identities = 49/272 (18%), Positives = 94/272 (34%), Gaps = 18/272 (6%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF-DYRKITTKHIRSGVESRKH 128 +L L+ E+ + LA + ++ +R G Y ++ IR +R Sbjct: 10 SLPDLLEEFLLARKADGLAELTLSTYRKIVTAFVRFCGPLVGYEELRRAAIRYF--ARPS 67 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS- 187 +P L ++ F W VR+ ++ NP + + K +R E +++ + Sbjct: 68 SPGYHNIKLRHLKAFFNWCVREGHLPANPLEGIRKAKEDLSRVRHAPLEALKRLLAQPDR 127 Query: 188 ---EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQ--KTGTIITVELPD- 239 G + L +G R + R L I+ + KT T+ + Sbjct: 128 KTYAGLRDYCLLLTQLDTGARPGELLRVTPSDLNLAARELHIRPEVAKTRVGRTLVVSPL 187 Query: 240 ---GFMKLLAMTPI---GKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFS 293 +LL P + F + + MN T ++ + +AGV + +G+R Sbjct: 188 TAQALARLLRARPSWWGEEVPLFASETGKPMNPTYWAERVREYCQRAGVKVTPYGLRHTF 247 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKG 325 A A L G + + Y + Sbjct: 248 ALEFLKASNDPFALQRVLGHRDLSMTRRYVRY 279 >gi|238027662|ref|YP_002911893.1| phage integrase family protein [Burkholderia glumae BGR1] gi|237876856|gb|ACR29189.1| Phage integrase family protein [Burkholderia glumae BGR1] Length = 368 Score = 118 bits (297), Expect = 8e-25, Method: Composition-based stats. Identities = 62/373 (16%), Positives = 110/373 (29%), Gaps = 54/373 (14%) Query: 7 LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66 LP V ++ HG +YF + RL + ++ L K R Sbjct: 11 LPARVYEK---HGS--WYFVDMRRKWHRLCSTTDG------LTRLYEQLAKFNREADERG 59 Query: 67 KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF-DYRKITTKHIRSGVES 125 T+ LI ++ A+ +R + + + G + I ++ Sbjct: 60 IADTMPALIDDWLL-VKLPKYALKTREEYRRMATFVKSEFGPQWTVEDVRPADIARFLDK 118 Query: 126 -RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 P+++ ++ + ++F AVR+ NP V + K R T +++ ++ Sbjct: 119 HFSTKPNTSNKYKALLSLIFAHAVRKGLRDRNPAREVAGAEEKAR-DRYITDMELEAVRA 177 Query: 185 FWSEGSQPR---------LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT----GT 231 G R + + R D Q + N+ KT G Sbjct: 178 AALVGLDGRPTASGTTIVCLIDLAYQTAQRIGDLLALNWQDVSNDGLFFHPSKTVNSSGV 237 Query: 232 IITVELPDGFMKLLAMTPIGK----ETFFINNDKQKMNATQFSIWFKAKATKA------- 280 + ++L L GK D + + +K +A Sbjct: 238 RLLIQLTPDLRATLDAAKAGKVKAIGPIICTQDGARYTYSGAQTAWKRAIKRARKSYEGE 297 Query: 281 ------------GVNKSAHGVR-KFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 V H +R K GA A G T + YTK + Sbjct: 298 CAAKGTEPDPRFLVGMHFHDLRAKALTDKQRLEGA--RAAQALAGHTTAEMTAHYTKARE 355 Query: 328 RIRLGIKNSRRIS 340 R+ RR S Sbjct: 356 VERVTPVPMRRTS 368 >gi|327395985|dbj|BAK13407.1| tyrosine recombinase XerC [Pantoea ananatis AJ13355] Length = 301 Score = 118 bits (297), Expect = 8e-25, Method: Composition-based stats. Identities = 37/259 (14%), Positives = 82/259 (31%), Gaps = 19/259 (7%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRK---ITTKHIRSGVESRKHTPSSAIQF---LT 138 L+ + S+ ++ + + + +RS + +A L+ Sbjct: 20 RQLSPLTLSSYARQLAALVTIADEMKISAWSQLDPAMVRSMAARSRRAGLAASSLALRLS 79 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQPRLA 195 ++R W V ++ +A NP + P+ + +D+ Q + R Sbjct: 80 ALRSFLDWQVSRDMLAANPAKGIATPRNGRHLPKNIDVDDVNQLLEIDLTDPLAIRDRTM 139 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMKLLA-------M 247 E + GLR S+ +H+ K V + + + Sbjct: 140 LEVMYGGGLRLSELVNMDCRHVDLEAGEVWVLGKGSKERRVPIGRTAVSWIQQWLPLRTA 199 Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAH 305 G + F+++ +++A F K G+ + H +R AT ++ Sbjct: 200 FNPGDDALFLSSRGSRISARNVQKRFAEWGIKQGISSHIHPHKLRHSFATHLLESSGDLR 259 Query: 306 ELMATYGWKTVDQAETYTK 324 + G + + YT Sbjct: 260 AVQELLGHANLSTTQIYTH 278 >gi|315444421|ref|YP_004077300.1| tyrosine recombinase XerD subunit [Mycobacterium sp. Spyr1] gi|315262724|gb|ADT99465.1| tyrosine recombinase XerD subunit [Mycobacterium sp. Spyr1] Length = 320 Score = 118 bits (297), Expect = 8e-25, Method: Composition-based stats. Identities = 45/274 (16%), Positives = 91/274 (33%), Gaps = 35/274 (12%) Query: 85 GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKH----------TPS 131 +A N+ S+ + G D +T + + + + + Sbjct: 28 RGVAANTLSSYRRDLRRYAEHLKARGVGDLAAVTETDVSEFLVALRLGDPDGGVVPLSAV 87 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF--------K 183 SA + L ++R L ++A + AI+ V+ P + + +++ + Sbjct: 88 SAARALIAVRGLHRFAAAEGIAAIDVARDVKPPTPSRRLPKSLSIDEVLALLEAAGGDSE 147 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFM 242 + + R E L +G R S++ + + + + K G + + + Sbjct: 148 ADSPLTLRNRALLELLYSTGARISEAVGLDIDDVDTSARSVLLRGKGGKQRLIPIGRPAV 207 Query: 243 KLL-----------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289 L A G F+N +++ + A +AGV S H + Sbjct: 208 TALETYLVRGRPDLARRGRGTPAIFLNARGGRLSRQSAWQVLQDAAGRAGVTATVSPHVL 267 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYT 323 R AT D GA + G +V + YT Sbjct: 268 RHSFATHLLDGGADVRVVQELLGHASVTTTQIYT 301 >gi|269215886|ref|ZP_06159740.1| tyrosine recombinase XerD [Slackia exigua ATCC 700122] gi|269130836|gb|EEZ61912.1| tyrosine recombinase XerD [Slackia exigua ATCC 700122] Length = 315 Score = 118 bits (297), Expect = 8e-25, Method: Composition-based stats. Identities = 35/264 (13%), Positives = 76/264 (28%), Gaps = 24/264 (9%) Query: 88 AVNSRISFESYFDQIIR------KSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMR 141 + + S+ + + + D + + + R + +S + +++++ Sbjct: 35 SDLTVRSYAADLEDYVAFLDSEGVHAARDVTRDALASYVADLSGRGYAAASIERHVSALK 94 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRLAFE 197 + VR VA +P ++ P + + + G + A E Sbjct: 95 GFHAFLVRDGLVASDPACALPLPGVPARLPDVLSIDQVNTLLDQEFREGPLGVRNACALE 154 Query: 198 FLLYSGLRCSDSCRAGVQH-LQNNIFSIKTQKTGTIITVEL-----------PDGFMKLL 245 L GLR S+ + K V + + LL Sbjct: 155 LLYGCGLRASELSGLDAGDAFLDEGILRIVGKGSRERIVPIGGSAARCLASYLEDARPLL 214 Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATA 304 +N +++ + G+ + H +R AT + GA Sbjct: 215 RSPRRLTPAVMLNARGGRLSRQSIHSIVREAGHVIGIKDLHPHTLRHSFATHLLEGGADL 274 Query: 305 HELMATYGWKTVDQAETYTKGADR 328 + G + + YT DR Sbjct: 275 RAIQEMLGHSDISTTQIYTH-VDR 297 >gi|319900908|ref|YP_004160636.1| tyrosine recombinase XerC subunit [Bacteroides helcogenes P 36-108] gi|319415939|gb|ADV43050.1| tyrosine recombinase XerC subunit [Bacteroides helcogenes P 36-108] Length = 294 Score = 118 bits (297), Expect = 8e-25, Method: Composition-based stats. Identities = 39/263 (14%), Positives = 94/263 (35%), Gaps = 23/263 (8%) Query: 85 GSLAVNSRISFESYFDQI----IRKSGDFDYRKITTKHIRSGV---ESRKHTPSSAIQFL 137 + + + + + ++ GD + + +R + + ++ + L Sbjct: 15 RNYSEGTVKYYRADILELQKFGEEMLGDLTPSDVDAELVREWITFLMDKGCASNTVNRKL 74 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS-----EGSQP 192 +S+R +++ +++ VA++P + PK+K + +M + +G + Sbjct: 75 SSIRTYYRFLLQRGMVAMDPLQKIVGPKKKKPLPTFLRQGEMDRLLDDIDFGEGFKGCRD 134 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLA----- 246 R+ E +G+R S+ + + + IK T K + + Sbjct: 135 RMIIEMFYATGMRLSELIGLNDKDVDFSASLIKVTGKRNKQRLIPFDKELELSMRKYVNV 194 Query: 247 ---MTPIGKETFFINNDKQKMNATQFSIWFKA--KATKAGVNKSAHGVRKFSATISADAG 301 PI + FF+ + +++ + K +S H +R AT + G Sbjct: 195 RNEAIPIRTDAFFVRKNGRRLYRSIVEYLVKRNLSKVVTVKKRSPHVLRHTFATAMLNNG 254 Query: 302 ATAHELMATYGWKTVDQAETYTK 324 A + G +++ E YT Sbjct: 255 ADLGSIKELLGHESLATTEIYTH 277 >gi|218897574|ref|YP_002445985.1| DNA integration/recombination/invertion protein [Bacillus cereus G9842] gi|218543461|gb|ACK95855.1| DNA integration/recombination/invertion protein [Bacillus cereus G9842] Length = 369 Score = 118 bits (297), Expect = 8e-25, Method: Composition-based stats. Identities = 48/312 (15%), Positives = 109/312 (34%), Gaps = 38/312 (12%) Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVE 124 TLK ++ + + S+ ++ + ++ + +I G K+ HI+ + Sbjct: 60 PSKVTLKDYLNHWLEIKS-MSIQKSTFAGYRAFINQHVIPSIGMVALHKLNVMHIQKCYK 118 Query: 125 SRKHTPSSAIQFLTSMRVL---FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 + + + L R+L AV+Q ++ NP E PK++ I+ WT+E++++ Sbjct: 119 TAINKGITNNSILLMHRILKSALNLAVKQNIISRNPADFAEIPKKEKTSIQTWTEEEVKK 178 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--------------NNIFSIKTQ 227 F + S+ S+ + + + +G+R + Q + +N + Sbjct: 179 FLA-HSQESRYHIGYLLAITTGMRLGEVLGLRWQDIDFEKHTVTINQTSGHDNKIKKTAK 237 Query: 228 KTGTIITVELPDGFMKLLAMTPI--------------GKETFFINNDKQKMNATQFSIWF 273 + T+ +P+ + L I ++ N + + F F Sbjct: 238 TNSSKRTIPVPNETIVALKKHKILINKEKLRFGSAYLDQDLINCNEFGRIIKRAHFRKSF 297 Query: 274 KAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRL 331 K G+ + H +R ATI G + G + Y+ + Sbjct: 298 IRATHKVGIKEIKFHDLRHTHATILLKQGVNPKIISERLGHTDISMTLSVYSHVL--PNM 355 Query: 332 GIKNSRRISSVV 343 + + + Sbjct: 356 QEEAVKNFGKSI 367 >gi|226306747|ref|YP_002766707.1| tyrosine recombinase XerD [Rhodococcus erythropolis PR4] gi|226185864|dbj|BAH33968.1| tyrosine recombinase XerD [Rhodococcus erythropolis PR4] Length = 307 Score = 118 bits (297), Expect = 8e-25, Method: Composition-based stats. Identities = 44/269 (16%), Positives = 86/269 (31%), Gaps = 33/269 (12%) Query: 88 AVNSRISFESYFDQIIRKSGDFDYRKIT----------TKHIRSGVESRKHTP---SSAI 134 A N+ +S+ ++ + H+R G + P SSA Sbjct: 20 ARNTLLSYRRDLNRYAEYLDGRGIDDVAGVTENDVTEFVTHLRLGDKDAGVLPLAASSAA 79 Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-------- 186 + L ++R K++ + V ++ +V+ P + + +D+ Sbjct: 80 RTLIAVRGFHKFSAAEGLVGVDVARTVKPPTPGRKLPKALPLDDVIALLDASGGGAAGDG 139 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFMKLL 245 + R E L +G R +++ V + + K G V + + + Sbjct: 140 PRDLRDRALLELLYSTGARITEAIDLDVDDIDTETRSVLLKGKGGKQRIVPVGRPAIAAV 199 Query: 246 AM---------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSA 294 G F+N +++ + A AG+ S H +R A Sbjct: 200 DAYLVRGRPSLATRGVPALFLNARGGRLSRQSAWQILQDAAASAGIKADVSPHTLRHSFA 259 Query: 295 TISADAGATAHELMATYGWKTVDQAETYT 323 T D GA + G +V + YT Sbjct: 260 THLLDGGADVRVVQELLGHASVTTTQIYT 288 >gi|58579355|ref|YP_197567.1| integrase/recombinase [Ehrlichia ruminantium str. Welgevonden] gi|58417981|emb|CAI27185.1| Integrase/recombinase [Ehrlichia ruminantium str. Welgevonden] Length = 318 Score = 118 bits (297), Expect = 8e-25, Method: Composition-based stats. Identities = 40/269 (14%), Positives = 89/269 (33%), Gaps = 30/269 (11%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDF--------DYRKITTKHIRSGVESR---KHTPSSA 133 ++N+ +S+ D++I+ D + +R SR + Sbjct: 27 KRYSLNTVVSYVRDLDKLIKFLHKSTGCSVTLNDLVHVKIGDLRKWFASRYQCGVEAVTN 86 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS------ 187 + L+++R F++ R Y+ + RP K + ++ +++ Sbjct: 87 ARSLSALRNFFRYLSRMYYIDSQAVFYLSRPHLKKTLPKVLAGSHIEIILNYYKQLPQNW 146 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP----DGFMK 243 + L SG R S+ Q ++ + I + + V + + Sbjct: 147 VDMRNFAIMMLLYGSGFRISEVVNLKFQDVREDRLFITGKGNKERV-VPILSMVYKSLCQ 205 Query: 244 LLAMTP------IGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSAT 295 + P + F+ +K++ T F+ + + G+ +AH R AT Sbjct: 206 YIECCPYYLGARPSNQYIFVGVRGKKLSRTHFANIMQKLRAEMGLPDITTAHTFRHSFAT 265 Query: 296 ISADAGATAHELMATYGWKTVDQAETYTK 324 GA + G ++ + YT Sbjct: 266 HLFIGGADIRSVQELLGHTSLSTTQIYTH 294 >gi|57239387|ref|YP_180523.1| integrase/recombinase [Ehrlichia ruminantium str. Welgevonden] gi|57161466|emb|CAH58391.1| putative integrase/recombinase XerD or XerC [Ehrlichia ruminantium str. Welgevonden] Length = 312 Score = 118 bits (297), Expect = 8e-25, Method: Composition-based stats. Identities = 40/269 (14%), Positives = 89/269 (33%), Gaps = 30/269 (11%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDF--------DYRKITTKHIRSGVESR---KHTPSSA 133 ++N+ +S+ D++I+ D + +R SR + Sbjct: 21 KRYSLNTVVSYVRDLDKLIKFLHKSTGCSVTLNDLVHVKIGDLRKWFASRYQCGVEAVTN 80 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS------ 187 + L+++R F++ R Y+ + RP K + ++ +++ Sbjct: 81 ARSLSALRNFFRYLSRMYYIDSQAVFYLSRPHLKKTLPKVLAGSHIEIILNYYKQLPQNW 140 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP----DGFMK 243 + L SG R S+ Q ++ + I + + V + + Sbjct: 141 VDMRNFAIMMLLYGSGFRISEVVNLKFQDVREDRLFITGKGNKERV-VPILSMVYKSLCQ 199 Query: 244 LLAMTP------IGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSAT 295 + P + F+ +K++ T F+ + + G+ +AH R AT Sbjct: 200 YIECCPYYLGARPSNQYIFVGVRGKKLSRTHFANIMQKLRAEMGLPDITTAHTFRHSFAT 259 Query: 296 ISADAGATAHELMATYGWKTVDQAETYTK 324 GA + G ++ + YT Sbjct: 260 HLFIGGADIRSVQELLGHTSLSTTQIYTH 288 >gi|219683210|ref|YP_002469593.1| site-specific tyrosine recombinase XerC [Bifidobacterium animalis subsp. lactis AD011] gi|219620860|gb|ACL29017.1| probable integrase [Bifidobacterium animalis subsp. lactis AD011] Length = 344 Score = 118 bits (297), Expect = 9e-25, Method: Composition-based stats. Identities = 47/298 (15%), Positives = 94/298 (31%), Gaps = 44/298 (14%) Query: 77 EYRKSAHWGSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133 EY +S L+ ++ +++ + + G + +T +R + HT Sbjct: 45 EYLRSNR--GLSEHTCMAYRGDILQCLEALDAFGRGNPDDVTLDDLRMWMGRMAHTVGKT 102 Query: 134 IQFLTSM--RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF--------- 182 ++ R F WA +A NP ++ PK ++ ++ Sbjct: 103 SLARKTIAVRSFFTWAYEHGMLAHNPAHALRTPKIDRNLPAVLNEDQAERLMDTVDAEAG 162 Query: 183 -----------KSFWSEGSQPRLAFEFLLYSGLRCSDSC--RAGVQHLQNNIFSIKTQKT 229 + ++ + E L +G+R + G N + + Sbjct: 163 EKNAGKSKDDALNAHAKALRDCAMLELLYATGMRVGELVGLDMGSFDWSNRTVRVLGKGN 222 Query: 230 GTIITVELPDGFMKLLAMTPIGKETF---------FINNDKQKMNATQFSIWFKAKATKA 280 T + + G+ F FI +++ +A +A Sbjct: 223 KTRVIPFGAPAQQAVEHWLHGGRPVFANGNSGNAVFIGVRGCRIDQRVVRQVVHEQAEQA 282 Query: 281 GV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-----DRIRLG 332 GV + S H +R +AT D GA E+ G ++ + Y + DR R Sbjct: 283 GVPDISPHALRHSAATHMLDGGADLREVQEMLGHSSLQTTQRYAHVSIEQLKDRYRQA 340 >gi|134301812|ref|YP_001121780.1| phage integrase family protein [Francisella tularensis subsp. tularensis WY96-3418] gi|134049589|gb|ABO46660.1| phage integrase family protein [Francisella tularensis subsp. tularensis WY96-3418] Length = 292 Score = 118 bits (297), Expect = 9e-25, Method: Composition-based stats. Identities = 37/264 (14%), Positives = 93/264 (35%), Gaps = 18/264 (6%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI---RSGVESRKHTPSSAIQFLTSMR 141 + + + +++ Q+ + D + +T I + ++ ++P + + L+S+R Sbjct: 18 KNYSQETINNYQRDLLQLNQALSDKNIISLTHSDILIWIKKLHAQGNSPKTLQRKLSSVR 77 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG---SQPRLAFEF 198 F + + E ++ NP ++ PK + +++ ++ F+ Sbjct: 78 SFFNFLINSEIISQNPANGIKAPKDSKRLPKVVNTDELAYLLDINPSNDIEARDIACFDL 137 Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------ELPDGFMKLLAMTP 249 L G+R S+ ++ + + +I+ G + L K+ Sbjct: 138 LYSCGIRLSELSSVELKDISISQKNIRVTGKGNKQRIVYFGTKTLSNLNRWL-KIRDSLK 196 Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATK-AGVNKSAHGVRKFSATISADAGATAHELM 308 + FI+ D + + + A K A + H +R A+ D+ + Sbjct: 197 PSSDYLFISRDGKHLTNRSIQKRLEIFAQKYASRHIHPHMLRHSFASHVLDSSKDLLAVK 256 Query: 309 ATYGWKTVDQAETYTKGADRIRLG 332 G + + YT + +L Sbjct: 257 DLLGHADISSTQIYTH-LNFQQLA 279 >gi|315655289|ref|ZP_07908190.1| tyrosine recombinase XerD [Mobiluncus curtisii ATCC 51333] gi|315490544|gb|EFU80168.1| tyrosine recombinase XerD [Mobiluncus curtisii ATCC 51333] Length = 327 Score = 118 bits (297), Expect = 9e-25, Method: Composition-based stats. Identities = 53/289 (18%), Positives = 91/289 (31%), Gaps = 43/289 (14%) Query: 66 KKPTTLKWLISEYRKSAHWG------SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119 P T+ + R+ + SL + ES+ + GD+ Sbjct: 30 ASPHTVAAYTRDLRRYITFLVANGVNSLDEVTLPVLESFARALEAGFGDYAAVA------ 83 Query: 120 RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179 PSSA + + S+R ++A V NP + K T E++ Sbjct: 84 ----------PSSARRAIASVRSWHRYAYETGAVRANPTKGIAPAKVGAHLPTVLTVEEV 133 Query: 180 QQFKSFWSE-----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTI 232 Q S + R EFL +G R S++ V + I ++ G Sbjct: 134 QTLLEAASATGDDNALRDRALLEFLYATGARISEAVNLAVDDIDLDEEIPLVRLFGKGRK 193 Query: 233 ITVELPDGFMKL------------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA 280 + + K LA + F+N + ++ +A A +A Sbjct: 194 ERLSMLGHLAKDALEAYLVRVRPRLAEKGRSQGRVFLNTLGRPLSRQSAWAIIQAVAQRA 253 Query: 281 GV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 + H +R AT GA + G +V + YTK + Sbjct: 254 QITVPVGPHTLRHCFATHLLQGGADVRAVQELLGHASVTTTQIYTKVTN 302 >gi|167040254|ref|YP_001663239.1| site-specific tyrosine recombinase XerC [Thermoanaerobacter sp. X514] gi|300914338|ref|ZP_07131654.1| integrase family protein [Thermoanaerobacter sp. X561] gi|307724426|ref|YP_003904177.1| integrase family protein [Thermoanaerobacter sp. X513] gi|166854494|gb|ABY92903.1| phage integrase family protein [Thermoanaerobacter sp. X514] gi|300889273|gb|EFK84419.1| integrase family protein [Thermoanaerobacter sp. X561] gi|307581487|gb|ADN54886.1| integrase family protein [Thermoanaerobacter sp. X513] Length = 330 Score = 118 bits (297), Expect = 9e-25, Method: Composition-based stats. Identities = 49/280 (17%), Positives = 92/280 (32%), Gaps = 30/280 (10%) Query: 92 RISFESY-----FDQIIRKSGDFDYRKITTKHIRSGV-------ESRKHTPSSAIQFLTS 139 + FD+I D D I + + R +TP + + + S Sbjct: 54 KQRRRKVSPDVEFDEI--DISDVDVDLIESVDLNDLYAYLNFVANERSNTPHARARKVAS 111 Query: 140 MRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR--LAF 196 +R + + ++ + ++ NP +E PK T ++ ++ + + R Sbjct: 112 LRSFYNYLYKKAKVLSKNPTQELESPKLSVRQPIYLTLDESKKLLNSIDGPFKERDYAII 171 Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG--------FMKLLAMT 248 L GLR S+ + ++++ ++ K TV L D Sbjct: 172 TLFLNCGLRVSELVNINLDDIKDDKLTVI-GKGNKQRTVYLNDACINAINTYLKVRPKEG 230 Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKA---GVNKSAHGVRKFSATISADAG-ATA 304 K+ F++ ++++ K A G SAH +R +AT+ G Sbjct: 231 VKDKKALFLSKRLKRISVKTVQYTVKKHLKNANLEGKKYSAHKLRHTAATLMYRYGNVDI 290 Query: 305 HELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344 L G V + YT D N +S D Sbjct: 291 RTLQKLLGHSNVSTTQIYTHVDDSQLKEAVNKNPLSQKED 330 >gi|15838084|ref|NP_298772.1| site-specific tyrosine recombinase XerC [Xylella fastidiosa 9a5c] gi|34223079|sp|Q9PD96|XERC_XYLFA RecName: Full=Tyrosine recombinase xerC gi|9106507|gb|AAF84292.1|AE003977_15 site-specific recombinase [Xylella fastidiosa 9a5c] Length = 294 Score = 118 bits (297), Expect = 9e-25, Method: Composition-based stats. Identities = 40/257 (15%), Positives = 84/257 (32%), Gaps = 17/257 (6%) Query: 85 GSLAVNSRISFESYFDQIIR------KSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLT 138 ++ ++ ++ +I + + + R + S + L+ Sbjct: 16 RGMSAHTLDAYRRDIGALIAWGVQQAVGEVVALDRAQLQAFVAAEHRRGLSAKSLQRRLS 75 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---WSEGSQPRLA 195 + R + W V++ ++AINP + PK + R ++ F G + R Sbjct: 76 ACRGFYAWLVKRGHIAINPAAGLRAPKALRKLPRILDADEAVSFVQIPTDTPLGLRDRAL 135 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-----ELPDGFMKLLAMTPI 250 E SGLR S+ C + + + G+ V + A + Sbjct: 136 LELFYSSGLRLSELCGLRWGGVDLDAGLVSVLGKGSRQRVVPVGSYALSALREWCASSGG 195 Query: 251 GK-ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHEL 307 G + F ++A + K A + G+ K H +R A+ ++ + Sbjct: 196 GAQQPVFPGRYGGPISARAVQVRIKQLAQRQGMAKHVHPHMLRHSFASHLLESSGDLRGV 255 Query: 308 MATYGWKTVDQAETYTK 324 G + + YT Sbjct: 256 QELLGHADITTTQIYTH 272 >gi|300361600|ref|ZP_07057777.1| tyrosine recombinase XerC [Lactobacillus gasseri JV-V03] gi|300354219|gb|EFJ70090.1| tyrosine recombinase XerC [Lactobacillus gasseri JV-V03] Length = 307 Score = 118 bits (297), Expect = 9e-25, Method: Composition-based stats. Identities = 42/279 (15%), Positives = 103/279 (36%), Gaps = 26/279 (9%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQ----IIRKSGDFDYRKITTKHIRSGVESR 126 LI +++ ++ + + N+ S+ + D+ G + K+ ++ + +++ Sbjct: 6 DKLIKQFQDYLNYERNYSKNTVSSYLNDLDEAKQFFKENGGFSGWDKVKSRDVEIFLQNL 65 Query: 127 K---HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 + ++ + ++S+R +++ V++E + +P ++ + + + + +++M+Q Sbjct: 66 ATQNRSRTTQARKMSSLRSFYRFLVKREVLENDPMQTISLRLGEKKLPQFFYEKEMRQVF 125 Query: 184 SFWSEGSQ----PRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVEL- 237 + R FE +G+R S+ + + + + K V Sbjct: 126 DSLVGHDRLVVRNRAMFELFYATGMRLSEMASLKLDQIDFDLKIILVHGKGNKDRYVPFG 185 Query: 238 ----------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS-- 285 D L F+NN QK+ + KAGV Sbjct: 186 KDALDALKEYRDDVRPALLGQNEDLGYVFLNNRGQKLTGRGIEYIMQQVFIKAGVGGKVH 245 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R AT + GA + G +++ + YT Sbjct: 246 PHMLRHSFATEMLNNGADLRSVQELLGHESLSTTQIYTH 284 >gi|220929076|ref|YP_002505985.1| site-specific tyrosine recombinase XerC [Clostridium cellulolyticum H10] gi|219999404|gb|ACL76005.1| integrase family protein [Clostridium cellulolyticum H10] Length = 330 Score = 118 bits (297), Expect = 9e-25, Method: Composition-based stats. Identities = 44/226 (19%), Positives = 89/226 (39%), Gaps = 20/226 (8%) Query: 124 ESRKHTPSSAIQFLTSMRVLFKWA-VRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 R +T + + + S++ F + + + + INP + +E PK R ++ ++ Sbjct: 88 NKRDNTSHARARKVASLKSFFNYLSTKAKLLDINPTIELESPKILKRLPRYLNFDESKKL 147 Query: 183 -----KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL 237 K+ + L G+R S+ + ++++N I K G ++ L Sbjct: 148 LTSVNKADHEYAIRDYAIITIFLNCGIRLSELVGINLHNIKDNTL-IVFGKGGKERSIPL 206 Query: 238 PDGFM----KLLAMTPI----GKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSA 286 + L + P+ K FI+ Q+++ K T+AG++ S Sbjct: 207 NRACLQAIDDYLKVRPVNGLKDKSALFISRRNQRISKESVQKIVKRYITEAGLDPQRYST 266 Query: 287 HGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGADRIRL 331 H +R +AT+ G L G +++ E YT D+ +L Sbjct: 267 HKLRHTAATLMYKYGNVDIRALQEILGHESISTTEIYTH-LDQQQL 311 >gi|313638152|gb|EFS03409.1| tyrosine recombinase XerC [Listeria seeligeri FSL S4-171] Length = 300 Score = 118 bits (297), Expect = 9e-25, Method: Composition-based stats. Identities = 39/281 (13%), Positives = 100/281 (35%), Gaps = 27/281 (9%) Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK------ITTKHIRSG 122 + L +Y S + + N+ ++E+ R + + + + + Sbjct: 5 GKWEQLFLDYLHSER--NYSENTSTAYENDLIDFRRFLNEQAITEYSQVTFLDVRIYLTE 62 Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ- 181 ++ + + ++ + ++S+R + + +R+ + NP V K + + + E+M+ Sbjct: 63 LKQKSFSRTTVARKISSLRSFYTFLLRENVITENPFTYVSHAKNQLRLPKFFYSEEMEAL 122 Query: 182 ----FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVE 236 ++ + + R+ E L +G+R S+ + + +I K V Sbjct: 123 FQVVYEDNETLTLRDRVLLEVLYGTGIRVSECAGILLTDIDKTYQAILIRGKGNKERYVP 182 Query: 237 L-----------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS 285 D ++L+ ++ IN+ + + +KA + + Sbjct: 183 FGAYAEDAITDYLDSRIELMKHFNKTHDSLLINHYGEPLTTRGIRYCLTKIISKASLTRK 242 Query: 286 --AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R AT + GA + G ++ + YT Sbjct: 243 IHPHMLRHTFATDLLNNGADMRTVQELLGHASLSSTQIYTH 283 >gi|254472325|ref|ZP_05085725.1| tyrosine recombinase XerD [Pseudovibrio sp. JE062] gi|211958608|gb|EEA93808.1| tyrosine recombinase XerD [Pseudovibrio sp. JE062] Length = 295 Score = 118 bits (297), Expect = 9e-25, Method: Composition-based stats. Identities = 39/270 (14%), Positives = 88/270 (32%), Gaps = 33/270 (12%) Query: 88 AVNSRISFESYFDQI--IRKSGDFDYRKITTKHIRSGVESRKHTPSSAI---QFLTSMRV 142 A N+ S+ + + + D + +R+ + +A + L+++R Sbjct: 9 AFNTLESYRTDLEDFDSFLTTQGVDLLAVQVTDVRAYLSDLTDRGFAASSQARRLSALRQ 68 Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-------------- 188 +++ ++ +P +V P++ ++E++ + E Sbjct: 69 FYQFCYAEDIRDDDPTRTVASPRKAATLPSVLSEEEVDRLIGKAEELANITHDSDAKQIR 128 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQH-LQNNIFSIKTQKTGTIITVELPDGFMKLL-- 245 ++ E L +GLR S+ V ++++ K G V L + Sbjct: 129 AARIYTLLEVLYATGLRVSELVSLPVSAAIRDSRLITVKGKGGKERAVPLSPRAQSAMVE 188 Query: 246 ------AMTPIGKETFFINNDK--QKMNATQFSIWFKAKATKAGVNK---SAHGVRKFSA 294 A+ + + F KA A +A +++ S H +R A Sbjct: 189 YVRLRAAVGAYADSVWLFPSHGESGHFTRQAFGRDLKALALEADIDRNKVSPHVLRHAFA 248 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTK 324 + GA + G + + YT Sbjct: 249 SHLLQNGADLRVVQQLLGHADISTTQIYTH 278 >gi|296394928|ref|YP_003659812.1| tyrosine recombinase XerD [Segniliparus rotundus DSM 44985] gi|296182075|gb|ADG98981.1| tyrosine recombinase XerD [Segniliparus rotundus DSM 44985] Length = 306 Score = 118 bits (297), Expect = 1e-24, Method: Composition-based stats. Identities = 45/266 (16%), Positives = 89/266 (33%), Gaps = 32/266 (12%) Query: 89 VNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES------RKHTPSSAIQFLTSMRV 142 + R Y D + ++S D ++T+ + + SSA + L+++R Sbjct: 24 ASYRRDLGRYADFLRQRS-VADLAQVTSAQVAEFLAWSRDPAGMGLAQSSAARGLSAVRG 82 Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF---------KSFWSEGSQPR 193 L ++AV + VA + V+ P+ + + + +S + + Sbjct: 83 LHRFAVLEGMVAQDVAHGVKPPQPGRRLPKALPVDQVIAILEASGIADAESDVPRALRDQ 142 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGK 252 E + +G R S++ + + S + K V L + + + Sbjct: 143 ALLELMYCTGCRVSEAVGLNLADVDVPSRSARVLGKGDKERLVPLGSAALAAVEAYLVRG 202 Query: 253 E-------------TFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS 297 F+N + + + A KAGV S H +R AT Sbjct: 203 RPAFLAQRAGKATNALFLNARGARFSRQSAWASLRHAAAKAGVQAEISPHTLRHSCATHL 262 Query: 298 ADAGATAHELMATYGWKTVDQAETYT 323 + GA + G +V + YT Sbjct: 263 LEGGADVRVVQELLGHASVVTTQIYT 288 >gi|218264364|ref|ZP_03478221.1| hypothetical protein PRABACTJOHN_03917 [Parabacteroides johnsonii DSM 18315] gi|218222062|gb|EEC94712.1| hypothetical protein PRABACTJOHN_03917 [Parabacteroides johnsonii DSM 18315] Length = 302 Score = 118 bits (297), Expect = 1e-24, Method: Composition-based stats. Identities = 54/277 (19%), Positives = 102/277 (36%), Gaps = 29/277 (10%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIR-----KSGDFDYRKITTKHIRSGV---ES 125 I + + + + + ++ Q K G F ++ +R+ + Sbjct: 5 IDSFLDCLRYERNYSEYTIGAYSKDLQQFEDFVKEKKEGIFVPEEVDADIVRNWIISLLD 64 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 K +P S + L+S++ FK+ ++Q +V++NP V PK K ++DM++ Sbjct: 65 NKISPVSVNRKLSSLKSFFKFLMKQGFVSVNPLRFVTGPKTKKPLPTFVKEKDMEELLDG 124 Query: 186 WS-----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPD 239 EG + RL E L +G+R S+ + + IK T K + + Sbjct: 125 DGFDEDFEGVRDRLILEMLYDTGVRRSELVGLQDIDIDYDAMLIKVTGKRNKQRLIPFAE 184 Query: 240 GFMKLLAM--------TPIGKETFFINNDKQKMNATQFSIWFKAK----ATKAGVNKSAH 287 L+ G FF+ + ++++ K K T A S H Sbjct: 185 RLKNLMLAYTEVRNREVGAGSGWFFVRKNGEQLSTGILYTIVKKKLSDIPTLA--KCSPH 242 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 +R AT + GA + + G ++ YT Sbjct: 243 VLRHSFATSMLNNGAELNAVKELLGHSSLASTSIYTH 279 >gi|52079925|ref|YP_078716.1| lambda integrase-like, N-terminal,DNA breaking-rejoining enzyme, catalytic core [Bacillus licheniformis ATCC 14580] gi|52785296|ref|YP_091125.1| hypothetical protein BLi01531 [Bacillus licheniformis ATCC 14580] gi|52003136|gb|AAU23078.1| Hypothetical Lambda integrase-like, N-terminal,DNA breaking-rejoining enzyme, catalytic core [Bacillus licheniformis ATCC 14580] gi|52347798|gb|AAU40432.1| putative protein [Bacillus licheniformis ATCC 14580] Length = 352 Score = 118 bits (297), Expect = 1e-24, Method: Composition-based stats. Identities = 42/212 (19%), Positives = 81/212 (38%), Gaps = 16/212 (7%) Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 +P A L +MR +F + +++ ++ NP + + K+ I+ + E+M+Q ++ Sbjct: 106 SPKYANDHLKTMRAVFTFCIKENMISENPFQKINKVKQPEPVIQILSVEEMKQLLKTPNK 165 Query: 189 G----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI----KTQKTGTIITVELPDG 240 + + L+ S R + ++++ + I + KT + L Sbjct: 166 RKFSEFRDYVVMMCLINSMCRIGEIVTLEIENINFELSYIILEAQKTKTRKGRMIPLDKN 225 Query: 241 ----FMKLLAMTPIGKET--FFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKF 292 KLL K + FI + ++ F A +AG+NK H R Sbjct: 226 TMQLLKKLLLRNTRFKPSKYVFITEEGTRLTTDNFRKRLADYAHQAGINKRVHPHLFRHT 285 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTK 324 +A++ AG L G K + YT Sbjct: 286 AASMFLQAGGDLRHLQTIIGHKDLRMVLRYTH 317 >gi|294084567|ref|YP_003551325.1| hypothetical protein SAR116_0998 [Candidatus Puniceispirillum marinum IMCC1322] gi|292664140|gb|ADE39241.1| hypothetical protein SAR116_0998 [Candidatus Puniceispirillum marinum IMCC1322] Length = 470 Score = 118 bits (297), Expect = 1e-24, Method: Composition-based stats. Identities = 57/364 (15%), Positives = 112/364 (30%), Gaps = 43/364 (11%) Query: 13 KERTRHGKIIYYFRKGHGRRI-RLPYPHESTFIPAYMSALTGST---PKREYINSPRKKP 68 T GK YY + ++I R+ F A +T + + P+K+ Sbjct: 31 ARITPGGKKTYYVQYMVYKKIKRVAIGAHGIFTTE--RARNQATIMLGEIKAGADPQKEK 88 Query: 69 TT------LKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRS 121 +T ++ L Y + ++ + Y D +I GD + + + Sbjct: 89 STKRKELFVRDLAERYMEEHVIPHCKPSTAKGYRRYLDKHLIPFFGDMKIKDVQRSDVAE 148 Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVA--INPCLSVERPKRKTEGIRPWTKEDM 179 S + TP A L + +F A NP +++ K R ++E++ Sbjct: 149 FHHSLRRTPYEANHGLEIISKMFNLAEMWGLRDDHTNPRRHIKKYPSKARE-RYLSEEEV 207 Query: 180 QQFKSFWSE-------GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQKTG 230 ++ + E + LL +G R + ++ + + KTG Sbjct: 208 KRLSAVLDEIKQYPDENLAAVYCIQLLLLTGCRLGEIRSLKWDYVDRKMQVLKLPDSKTG 267 Query: 231 TI------ITVELPDGFMKLLAMTPIGKETFFINNDK--QKMNATQFSIWFKAKATKAGV 282 + L D A P+ + + ++ AG+ Sbjct: 268 AKYVYVGNTVMNLLDEVHAHPAR-PVDNPYVI---WGLIEGSHLDNVQKPWRRFRKMAGI 323 Query: 283 -NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341 + H +R A+ + G + + G V Y + + SS Sbjct: 324 EDVRIHDLRHSFASFAVSKGMSLAVIGRLLGHTQVQTTARYAH-----LMAAPMTEAASS 378 Query: 342 VVDS 345 V D Sbjct: 379 VTDV 382 >gi|54027830|ref|YP_122070.1| putative recombinase [Nocardia farcinica IFM 10152] gi|54019338|dbj|BAD60706.1| putative recombinase [Nocardia farcinica IFM 10152] Length = 311 Score = 118 bits (297), Expect = 1e-24, Method: Composition-based stats. Identities = 47/276 (17%), Positives = 90/276 (32%), Gaps = 23/276 (8%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSSA 133 I ++ + N+ ++ D +T +R + P++ Sbjct: 20 IEQFLTDLANANRPANTLRAYRGDLTGFAEHV-DGGIDGVTVAAVRGFLSGIADLAPATR 78 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ-FKSFWSEGSQ- 191 + ++ +WAVR + +A NP V+ RP D+ + F + + + Sbjct: 79 KRKRAAVAAFCRWAVRHDLLAANPMDKVDTITVPKTLPRPAPAADIAKVFAAICARRPRK 138 Query: 192 --------PRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTIITVELPDG- 240 R+ FE G R S+ C V+ + ++ G + L D Sbjct: 139 DVALDVLRDRVLFETAYVCGARASEVCELYVEDFDLRLDDEHVRLHGKGGTVRTVLLDDR 198 Query: 241 -----FMKLLAMTPIGKETFF---INNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKF 292 L T F IN ++ + + AGV+ H +R Sbjct: 199 GYVAMLRLYLDRTGYTAGPMFRASINGRGGPLSYSAAHHRWSRYCAAAGVDIDIHQLRHS 258 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 AT +AG + + G + + + Y AD+ Sbjct: 259 HATELINAGVSIEVVRKRLGHASTETTQIYALLADQ 294 >gi|54310573|ref|YP_131593.1| site-specific tyrosine recombinase XerC [Photobacterium profundum SS9] gi|46915016|emb|CAG21791.1| putative integrase/recombinase XerC [Photobacterium profundum SS9] Length = 313 Score = 118 bits (297), Expect = 1e-24, Method: Composition-based stats. Identities = 42/268 (15%), Positives = 90/268 (33%), Gaps = 22/268 (8%) Query: 77 EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV------ESRKHTP 130 EY +S L+++++ +++ I + F+ T Sbjct: 26 EYIRSER--ELSLHTQQNYKRQLSTIAEQLVSFEVTDWTMVDAGWVRQIASKGMRDGLKA 83 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---WS 187 SS L+++R F + V+++ + NP V P++ + ++M Q S Sbjct: 84 SSISMRLSALRSFFDFLVQKDILKANPAKGVAAPRKARPLPKNLDVDEMDQLLSVNEDDP 143 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLA 246 + R E + +GLR ++ V+ + + I+ K V + +A Sbjct: 144 LSIRDRAMMELMYGAGLRLAELVSLNVRDISLSKGDIRVIGKGDKERIVPFAGLAREWVA 203 Query: 247 -------MTPIGKET-FFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATI 296 G E F++ +++ K V + + H +R AT Sbjct: 204 NWLKVRGALASGDEVGLFVSKLGTRISTRNVQKRMAEWGQKQAVSSHINPHKLRHSFATH 263 Query: 297 SADAGATAHELMATYGWKTVDQAETYTK 324 ++ + G + + YT Sbjct: 264 MLESSGDLRAVQELLGHANLSTTQIYTH 291 >gi|148284245|ref|YP_001248335.1| phage-related integrase [Orientia tsutsugamushi str. Boryong] gi|148284475|ref|YP_001248565.1| phage-related integrase [Orientia tsutsugamushi str. Boryong] gi|148284530|ref|YP_001248620.1| phage-related integrase [Orientia tsutsugamushi str. Boryong] gi|148284668|ref|YP_001248758.1| phage-related integrase [Orientia tsutsugamushi str. Boryong] gi|148284694|ref|YP_001248784.1| phage-related integrase [Orientia tsutsugamushi str. Boryong] gi|148284733|ref|YP_001248823.1| phage-related integrase [Orientia tsutsugamushi str. Boryong] gi|148284760|ref|YP_001248850.1| phage-related integrase [Orientia tsutsugamushi str. Boryong] gi|148284814|ref|YP_001248904.1| phage-related integrase [Orientia tsutsugamushi str. Boryong] gi|148285024|ref|YP_001249114.1| phage-related integrase [Orientia tsutsugamushi str. Boryong] gi|148285095|ref|YP_001249185.1| phage-related integrase [Orientia tsutsugamushi str. Boryong] gi|146739684|emb|CAM79481.1| phage-related integrase [Orientia tsutsugamushi str. Boryong] gi|146739914|emb|CAM79904.1| phage-related integrase [Orientia tsutsugamushi str. Boryong] gi|146739969|emb|CAM80008.1| phage-related integrase [Orientia tsutsugamushi str. Boryong] gi|146740107|emb|CAM80274.1| phage-related integrase [Orientia tsutsugamushi str. Boryong] gi|146740133|emb|CAM80327.1| phage-related integrase [Orientia tsutsugamushi str. Boryong] gi|146740172|emb|CAM80404.1| phage-related integrase [Orientia tsutsugamushi str. Boryong] gi|146740199|emb|CAM80478.1| phage-related integrase [Orientia tsutsugamushi str. Boryong] gi|146740253|emb|CAM80591.1| phage-related integrase [Orientia tsutsugamushi str. Boryong] gi|146740463|emb|CAM80988.1| phage-related integrase [Orientia tsutsugamushi str. Boryong] gi|146740534|emb|CAM81117.1| phage-related integrase [Orientia tsutsugamushi str. Boryong] Length = 414 Score = 118 bits (297), Expect = 1e-24, Method: Composition-based stats. Identities = 51/287 (17%), Positives = 98/287 (34%), Gaps = 28/287 (9%) Query: 54 STPKREYINSPRKKPTTLKWLISEYRKSAH------WGSLAVN----SRISFESYFDQII 103 R + T K L +Y + W A ++ +E +I Sbjct: 108 ENENRIKERERKANDITFKELCYKYIEEYAKIYTINWKENADRVHTYAQALYEKKISKIR 167 Query: 104 RKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER 163 + + I+ + + +A L ++R +F A++ + NP L +E+ Sbjct: 168 MSDIEPIFNDISKEGKYA----------TANALLATLRTIFNKAIKWGLIENNPTLGIEQ 217 Query: 164 PKRKTEGIRPWTKEDMQQFKSFWSEGSQP--RLAFEFLLYSGLRCSDSCRAGVQHLQ--N 219 K + R + ++M +F + P R LY+G R S+ ++ Sbjct: 218 HKLQARERR-LSYDEMGRFLQVLCGEASPLIRDFALLALYTGARKSNVLEMEWDNIDFER 276 Query: 220 NIFSIKTQKTGTIITVELPDGFMKLLAMTP-IGKETFFINNDKQKMNATQFSI-WFKAKA 277 I+ I K G + L D M++L I + + + + +K Sbjct: 277 KIWHIPKTKNGKAQNIPLTDEAMEILQARKLISTSKWVLPSSTSESGHLSHPNTAWKIIC 336 Query: 278 TKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 KA + N H +R+ A+ DAG + + + YT Sbjct: 337 EKASIKNFRIHDLRRTFASCMGDAGESQRTISIALNHINPNSTIPYT 383 >gi|83310025|ref|YP_420289.1| integrase [Magnetospirillum magneticum AMB-1] gi|82944866|dbj|BAE49730.1| Integrase [Magnetospirillum magneticum AMB-1] Length = 285 Score = 118 bits (297), Expect = 1e-24, Method: Composition-based stats. Identities = 36/252 (14%), Positives = 88/252 (34%), Gaps = 14/252 (5%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYR--KITTKHIRSGVESRKHTPSSAIQFLTSMRV 142 +L+ ++ S+ + R R + + + S+ + +S QF+ ++R Sbjct: 18 RNLSPATQRSYLHAVSKFSRFFNRSPDRLDHDDVRTWQVHLVSQGISWASLNQFVAALRF 77 Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS 202 + +R + + ++ + +++ +F + R A + Sbjct: 78 FYGVTLRCPEIP----ERIVYARQPRRLPIVLSADEVVRFLEAVPS-LKNRTALTTAYAT 132 Query: 203 GLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLLAM---TPIGKETFFI 257 GLR S+ + + + I+ K V L + +L + F Sbjct: 133 GLRVSEVVALKLADIDSGRMVIRVEQGKGRKDRYVMLSAQLLGILRTYWPLARPEHWLFP 192 Query: 258 NNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKT 315 + + + T + ++ AG++K + H +R AT +AG + G Sbjct: 193 GREDKPIEPTVLNSACRSACVAAGIDKRVTVHTLRHSFATHLLEAGTDIRIIQVLLGHNN 252 Query: 316 VDQAETYTKGAD 327 + YT+ ++ Sbjct: 253 LSTTARYTQVSN 264 >gi|161729088|ref|NP_220744.2| site-specific tyrosine recombinase XerD [Rickettsia prowazekii str. Madrid E] gi|34223091|sp|Q9ZDG8|XERD_RICPR RecName: Full=Tyrosine recombinase xerD gi|292571969|gb|ADE29884.1| Tyrosine recombinase XerD [Rickettsia prowazekii Rp22] Length = 311 Score = 118 bits (297), Expect = 1e-24, Method: Composition-based stats. Identities = 48/276 (17%), Positives = 98/276 (35%), Gaps = 38/276 (13%) Query: 85 GSLAVNSRISFESYFDQI-----IRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139 +L+ NS +S++ +K + + + + S S + +++ Sbjct: 15 RALSKNSILSYKRDLLDFQHYLAAQKISELNITTGNIRKWIEYLASNNLHARSINRKIST 74 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-----SEGSQPRL 194 ++ + + + + + NP L+++ PK + + + + ++ + EG + Sbjct: 75 IKSYYAFLISENHTKFNPVLNIDLPKYQNKLPIILSIDQIKLILEYCSKDNTPEGIRLNA 134 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNN---------IFSIKTQKTGTIITVELPDGFMKLL 245 L SGLR S+ + + N IFS+ + + V + ++ Sbjct: 135 MINLLYASGLRVSELVSLKLADILTNNTSKGTVRKIFSVLGKGNKERVIVINDQAVLSII 194 Query: 246 AMTPIGKETFFINNDKQK--------------MNATQFSIWFKAKATKAGVN---KSAHG 288 I FFIN K K M F+I K+ A G+N S H Sbjct: 195 KYLEIRD--FFINKAKSKNLIYLFPSSAVAGYMTRQNFAILLKSVALYTGLNPEHVSPHI 252 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 +R A+ + GA + G + + YT Sbjct: 253 LRHSFASHLLEGGADLRVIQELLGHADISTTQIYTH 288 >gi|3860920|emb|CAA14820.1| INTEGRASE/RECOMBINASE XERD (xerD) [Rickettsia prowazekii] Length = 335 Score = 118 bits (297), Expect = 1e-24, Method: Composition-based stats. Identities = 48/276 (17%), Positives = 98/276 (35%), Gaps = 38/276 (13%) Query: 85 GSLAVNSRISFESYFDQI-----IRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139 +L+ NS +S++ +K + + + + S S + +++ Sbjct: 39 RALSKNSILSYKRDLLDFQHYLAAQKISELNITTGNIRKWIEYLASNNLHARSINRKIST 98 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-----SEGSQPRL 194 ++ + + + + + NP L+++ PK + + + + ++ + EG + Sbjct: 99 IKSYYAFLISENHTKFNPVLNIDLPKYQNKLPIILSIDQIKLILEYCSKDNTPEGIRLNA 158 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNN---------IFSIKTQKTGTIITVELPDGFMKLL 245 L SGLR S+ + + N IFS+ + + V + ++ Sbjct: 159 MINLLYASGLRVSELVSLKLADILTNNTSKGTVRKIFSVLGKGNKERVIVINDQAVLSII 218 Query: 246 AMTPIGKETFFINNDKQK--------------MNATQFSIWFKAKATKAGVN---KSAHG 288 I FFIN K K M F+I K+ A G+N S H Sbjct: 219 KYLEIRD--FFINKAKSKNLIYLFPSSAVAGYMTRQNFAILLKSVALYTGLNPEHVSPHI 276 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 +R A+ + GA + G + + YT Sbjct: 277 LRHSFASHLLEGGADLRVIQELLGHADISTTQIYTH 312 >gi|127511259|ref|YP_001092456.1| tyrosine recombinase XerC [Shewanella loihica PV-4] gi|126636554|gb|ABO22197.1| tyrosine recombinase XerC [Shewanella loihica PV-4] Length = 297 Score = 118 bits (297), Expect = 1e-24, Method: Composition-based stats. Identities = 34/265 (12%), Positives = 95/265 (35%), Gaps = 19/265 (7%) Query: 76 SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGVESRKHTPS 131 Y S L+ ++ ++ +++ + + + + + + + P Sbjct: 10 VSYLVSER--QLSPHTVRNYRFELERVGELLPENFIWAEVSDEQLQAVLNKLHRKGLGPR 67 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR---PWTKEDMQQFKSFWSE 188 S L++++ + +++ Y+ +PCL++ PK++ + + + + + Sbjct: 68 SIALTLSALKQFCHYLLQEGYIKKDPCLNLSAPKQQKPLPKNMDLDSVTHLLSIEGDDAL 127 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-IITVELP-------DG 240 + + E SGLR ++ + + + +K G+ V + D Sbjct: 128 ALRDKAIMELFYSSGLRLAELAALDTRDIASGEHQVKVMGKGSKERIVPIGRMALSAIDD 187 Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISA 298 ++K+ ++ P + F+ +++ G+N H +R AT Sbjct: 188 WLKVRSLLPCEDDALFVTAKGKRLAHRSIQARLNKWGQLQGLNARVHPHKLRHSFATHML 247 Query: 299 DAGATAHELMATYGWKTVDQAETYT 323 ++ A + G + + YT Sbjct: 248 ESSADLRAVQELLGHANLSTTQVYT 272 >gi|319788011|ref|YP_004147486.1| tyrosine recombinase XerD [Pseudoxanthomonas suwonensis 11-1] gi|317466523|gb|ADV28255.1| tyrosine recombinase XerD [Pseudoxanthomonas suwonensis 11-1] Length = 326 Score = 118 bits (297), Expect = 1e-24, Method: Composition-based stats. Identities = 42/269 (15%), Positives = 81/269 (30%), Gaps = 30/269 (11%) Query: 85 GSLAVNSRISFESYFDQIIR-----KSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139 LA S ++ + + R G + + + P S + Sbjct: 40 RGLARASLDAYRRDLELLARWRDGTGGGLVGADREALFGYLAWRAGHGYGPRSNARLRAC 99 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195 +R + V +P ++ P+ + ++ ++ EG + R Sbjct: 100 LRAFYAHLVLAGVRQDDPAALIDPPRMPRPLPKAMSESQVEALLGVPDVSIPEGLRDRAM 159 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-IITVELPDGFMKLL--------- 245 E + +GLR S+ + ++ + G+ V L + L Sbjct: 160 LELMYAAGLRVSELVNLPANAVNLRQGVVRVRGKGSKERLVPLGEESQDWLERYLRESRP 219 Query: 246 --------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSA 294 G+ FI + F K A AG++ + HG+R A Sbjct: 220 ALTGGRPVPADASGEVPLFIGASRSAPTRQDFWRAIKRHAAAAGIDPRTVTPHGLRHSFA 279 Query: 295 TISADAGATAHELMATYGWKTVDQAETYT 323 T + GA L G ++ + YT Sbjct: 280 THLLNHGADLRALQLLLGHASLSTTQIYT 308 >gi|269302896|gb|ACZ32996.1| putative tyrosine recombinase XerC [Chlamydophila pneumoniae LPCoLN] Length = 312 Score = 118 bits (297), Expect = 1e-24, Method: Composition-based stats. Identities = 46/283 (16%), Positives = 103/283 (36%), Gaps = 29/283 (10%) Query: 66 KKPTTLKWLISEYRKSAHW----GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR- 120 P TL+ + + G+LA +S + + RK + + T +H+R Sbjct: 18 ASPHTLRNYCLDLNGLKIFLEERGNLAPSSPLQLATE----KRKVSELPFSLFTKEHVRM 73 Query: 121 --SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 + + + + L+S++ + V Q+ + NP ++ P+ E P T Sbjct: 74 YIAKLIENGKAKRTIKRCLSSIKSFAHYCVVQKILLENPAETIHGPRLPKELPSPMTYAQ 133 Query: 179 MQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTI 232 ++ + G + R E SGLR S+ Q ++ I+ K Sbjct: 134 VEVLMATPDISKYHGLRDRCLMELFYSSGLRISEIVAVNKQDFDLSTHLIRIR-GKGKKE 192 Query: 233 ITVELPDGFMKLL---------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV- 282 + + ++ + + F+N ++++ F+ ++G+ Sbjct: 193 RIIPVTSNAIQWIQTYLNHPDRKRLEKDPQAIFLNRFGRRISTRSIDRSFQEYLRRSGLS 252 Query: 283 -NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 + + H +R AT ++G + A G +++ YT+ Sbjct: 253 GHITPHTIRHTIATHWLESGMDLKTIQALLGHSSLETTTVYTQ 295 >gi|317129457|ref|YP_004095739.1| integrase family protein [Bacillus cellulosilyticus DSM 2522] gi|315474405|gb|ADU31008.1| integrase family protein [Bacillus cellulosilyticus DSM 2522] Length = 391 Score = 118 bits (297), Expect = 1e-24, Method: Composition-based stats. Identities = 56/387 (14%), Positives = 118/387 (30%), Gaps = 62/387 (16%) Query: 18 HGKIIYYFRKG-----HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72 G + G+RI+ + L + E K Sbjct: 8 RGNNRWRLEVSLGVDQDGKRIKKRKTITAKNKTEAKKRLAEFVTEIEAGEYIDPSKMKFK 67 Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVE------S 125 + E+ L + +++S + +I G+ + +I + ++ + Sbjct: 68 DFVKEWETKYGMKHLGAKTLETYKSIINNYLIPTFGNKKLDEFKPINIINYLDCLGEDNA 127 Query: 126 RKHTP------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED- 178 RK SS +R +F A + NP SV+ PK E +TK++ Sbjct: 128 RKDGKEGGLSSSSIKYHYRVLRNIFSRAKEWIIIKNNPVESVKPPKVTQEKTSVYTKDEV 187 Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-------------- 224 ++ + +E +L L +GLR + + + +I Sbjct: 188 IELLELLKNEPIHQKLMVTAALMAGLRRGEILGLQWDDIDLDAGTISINHSLQYTKEKGY 247 Query: 225 ---KTQKTGTIITVELPDGFMKLLAMTPIGKE----------------TFFINNDKQKMN 265 + +I V +P ++ K F + + + Sbjct: 248 VLGPPKNNSSIRKVSIPMYLVEEFKKYKRTKSKERIQAAELWEGGKYFYVFSSWNGKPFY 307 Query: 266 ATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA----E 320 T W++ + G H +R +AT+ + G A + A G + Sbjct: 308 PTAVGTWWRRFLKRKGFKYIRFHDLRHTAATLLINEGEHAKTISARLGHADIKTTMNIYG 367 Query: 321 TYTKGADRIRLGIKNSRRISSVVDSDD 347 Y + AD + +++S+ + + Sbjct: 368 HYLREADEK-----AANKLNSIFGNTN 389 >gi|229916013|ref|YP_002884659.1| integrase family protein [Exiguobacterium sp. AT1b] gi|229467442|gb|ACQ69214.1| integrase family protein [Exiguobacterium sp. AT1b] Length = 337 Score = 118 bits (297), Expect = 1e-24, Method: Composition-based stats. Identities = 46/311 (14%), Positives = 94/311 (30%), Gaps = 44/311 (14%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISF-ESYFDQII------------RKSGDFDYRKITTK 117 L I ++ + + + D + +I Sbjct: 27 LPAFIQQFFHHLAAKHYSKQTAQRYVYDVLDFFRWVELVSGTELEPETIDLPSFTEIDHA 86 Query: 118 HIRSGV----ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173 + ++ PS + L++++ LF + + +NP +VERPKR Sbjct: 87 GAEAYATYLALELENAPSVINRKLSTLQSLFNYLIETNQATVNPFQTVERPKRGKRNPVY 146 Query: 174 WTKEDMQQF-------------KSFWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHLQ 218 T+ + F ++ W E ++ R L + L +G+R S+ + Sbjct: 147 LTESEWLDFSTLVRSNVGMTNREASWYEMNRARDFLIIQLLGLTGMRVSELVGLNWSDIN 206 Query: 219 NNIFSIKT-QKTGTIITVELPDGFMKLL--AMTPIGKETFFINNDKQKMNATQFSIWFKA 275 +I+ K + + + LL + F N Q++ K Sbjct: 207 LETGTIRVIGKGDKERLIPIAGPLLPLLSEYRHTSSEGAVFQNEKGQRIAVRTVQHMLKG 266 Query: 276 KATKAGV--------NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 + + H +R A+ A G + G ++V + Y D Sbjct: 267 HIDRLKPYLPFLSHKQVTPHKLRHTFASRLAMGGVDVLTIQQLLGHESVATTQVYAHIGD 326 Query: 328 -RIRLGIKNSR 337 R + I + Sbjct: 327 ERKKHAISGLQ 337 >gi|289434561|ref|YP_003464433.1| integrase/recombinase XerC [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289170805|emb|CBH27347.1| integrase/recombinase XerC [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 300 Score = 118 bits (297), Expect = 1e-24, Method: Composition-based stats. Identities = 39/281 (13%), Positives = 99/281 (35%), Gaps = 27/281 (9%) Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK------ITTKHIRSG 122 + L +Y S + + N+ ++E+ R + + + + + Sbjct: 5 GKWEQLFLDYLHSER--NYSENTSTAYENDLIDFRRFLNEQAITEYNQVTFLDVRIYLTE 62 Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ- 181 ++ + + ++ + ++S+R + + +R+ + NP V K + + + E+M+ Sbjct: 63 LKQKSFSRTTVARKISSLRSFYTFLLRENVITENPFTYVSHAKNQLRLPKFFYSEEMEAL 122 Query: 182 ----FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVE 236 ++ + + R+ E L +G+R S+ + + +I K V Sbjct: 123 FQVVYEDNETLTLRDRVLLEVLYGTGIRVSECAGILLTDIDKTYQAILIRGKGNKERYVP 182 Query: 237 L-----------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS 285 D ++L+ ++ IN+ + +KA + + Sbjct: 183 FGAYAEDAITDYLDSRIELMKHFNKTHDSLLINHYGDPLTTRGIRYCLTKIISKASLTRK 242 Query: 286 --AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R AT + GA + G ++ + YT Sbjct: 243 IHPHMLRHTFATDLLNNGADMRTVQELLGHASLSSTQIYTH 283 >gi|182680307|ref|YP_001834453.1| integrase family protein [Beijerinckia indica subsp. indica ATCC 9039] gi|182636190|gb|ACB96964.1| integrase family protein [Beijerinckia indica subsp. indica ATCC 9039] Length = 325 Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats. Identities = 50/294 (17%), Positives = 99/294 (33%), Gaps = 35/294 (11%) Query: 74 LISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGD-----FDYRKITTKHIRSGVESRK 127 LI + A N+ ++ + D D +H +E++ Sbjct: 9 LIEAFLDMIGAERGAARNTLEAYGRDLTDYAQALADRGRSLLDATSEDIRHYLGDLETQG 68 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-- 185 PSS+ + L+++R ++ + + + +P L +E P+R + T ++++ + Sbjct: 69 LKPSSSARRLSAIRQFHRFLASESHRSDDPALILEGPRRSRGLPKTLTMAEVERLLTVSK 128 Query: 186 -------WSEGSQPRLA-----FEFLLYSGLRCSDSCRAGVQHLQN-NIFSIKTQKTGTI 232 G + R A E L +GLR S+ ++ + K G Sbjct: 129 EGLEDPARPLGERVRAARTACLLELLYATGLRVSELVSLPDSAMRGADPLITIRGKGGRE 188 Query: 233 ITVELPDGFMKLLA-----------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281 V LP + + G F +++ ++ F+ K A AG Sbjct: 189 RLVPLPPVARRAITFYRDLLHQKHLGLSKGGWLFPADSETGYLSRQAFARDLKVVAAAAG 248 Query: 282 VNK---SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 ++ S H +R A+ GA + G + + YT D Sbjct: 249 IDTARISPHVLRHAFASHLLQNGADLRIVQELLGHADIATTQIYTHVLDERMKA 302 >gi|317153308|ref|YP_004121356.1| integrase family protein [Desulfovibrio aespoeensis Aspo-2] gi|316943559|gb|ADU62610.1| integrase family protein [Desulfovibrio aespoeensis Aspo-2] Length = 304 Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats. Identities = 44/285 (15%), Positives = 86/285 (30%), Gaps = 28/285 (9%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD---------YRKITTKHIRS 121 L + S + + ++ + R + + Sbjct: 10 LAGATEAFCASLSAEGRSPATIAAYRRDLALLARVAEKLAAGIICREITPGLLDQVFSSE 69 Query: 122 GVESRKHTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 V + P SA + ++R F WA+ V NP S+ + + T + Sbjct: 70 AVADSERGPRSAASLHRMKAALRAFFAWAIDVGIVDDNPARSIRMHRLPRKLPVFLTVGE 129 Query: 179 MQQFKSFWSEGS-----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTI 232 ++ + + R E LL +G+R + + + + ++ K Sbjct: 130 KKRLLKELKGRTDFPAFRDRAMIEVLLGTGIRLGELAALDMDDIDLDAKHLRVWAKGNVP 189 Query: 233 ITVELPDGFMKLLAMTPIGK--------ETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284 + LL + E F++N ++ Q + KAG+ K Sbjct: 190 QVKFIKTDLRTLLRRYLAERRRRGRPEMEALFLSNRDSRLCQRQIANRLAHWLRKAGIEK 249 Query: 285 --SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 + HG+R AT A + G + V + YT D Sbjct: 250 ELTPHGMRHTFATHLYGATNDLLVVQRALGHRDVSTTQIYTHLVD 294 >gi|254561653|ref|YP_003068748.1| tyrosine recombinase xerD [Methylobacterium extorquens DM4] gi|254268931|emb|CAX24892.1| Tyrosine recombinase xerD [Methylobacterium extorquens DM4] Length = 328 Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats. Identities = 44/273 (16%), Positives = 86/273 (31%), Gaps = 28/273 (10%) Query: 85 GSLAVNSRISFESYFDQIIRK-----SGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139 A N+ ++ D + + + + + +E R SSA + L+ Sbjct: 27 RGAAANTLAAYRRDLDDYLGYLAQGGIDPEEAQADQVRAYIASLEPRGLKASSAARRLSC 86 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF--------------KSF 185 +R ++ + Y +P V P+R + + ++ + ++ Sbjct: 87 IRGFHRFLYAEGYSETDPTAPVAAPRRAKGLPKVLSVAEVDRLLATARERVEAAGDDRAE 146 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKL 244 ++ E L +GLR S+ + + K G V L D + Sbjct: 147 ARSAARMLCLLELLYATGLRVSELVALPRSAAATRERYLVVKGKGGRERLVPLTDLAREA 206 Query: 245 LAM-----TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATI 296 + T G F ++ + F+ K A AG+ S H +R A+ Sbjct: 207 MRTHVAYLTAEGAWLFPAESESGHLTRQAFARDLKTAAAAAGLRTDRVSPHVLRHAFASH 266 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRI 329 GA + G + + YT D Sbjct: 267 LLQNGADLRIVQELLGHADISTTQIYTHVLDER 299 >gi|182418976|ref|ZP_02950232.1| tyrosine recombinase XerC [Clostridium butyricum 5521] gi|237668918|ref|ZP_04528902.1| tyrosine recombinase XerC [Clostridium butyricum E4 str. BoNT E BL5262] gi|182377259|gb|EDT74827.1| tyrosine recombinase XerC [Clostridium butyricum 5521] gi|237657266|gb|EEP54822.1| tyrosine recombinase XerC [Clostridium butyricum E4 str. BoNT E BL5262] Length = 334 Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats. Identities = 43/263 (16%), Positives = 96/263 (36%), Gaps = 15/263 (5%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPSS 132 I Y + + + + ++ + + IT IR + + PS+ Sbjct: 58 ILLYLQVRKLENYSQATLSNYMYTLRKF-ASFINKPVGTITKNDIRYYMAINFTELKPST 116 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192 + + F+W ++E + NP S++ + + T E++++ + + + Sbjct: 117 VNNKIACFKAFFQWLEQEEMIPKNPARSLDETRLPKRLRKSLTAEELERVRIACVDN-RD 175 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLA----- 246 R EFL+ +G R S+ ++ L N ++K K TV D + Sbjct: 176 RALVEFLVATGCRVSEVVSCNIKDLDLNDNTLKVIGKGDKERTVCFTDKAKLYIRKYIEE 235 Query: 247 -MTPIGKETFFINN--DKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAG 301 ++ F++ +++ + +A + K H +R AT+S +G Sbjct: 236 DRQKDNEDALFVSTKFPYNRISRRSIEVAISKIGIRANLGKPLFPHLLRHTMATLSLQSG 295 Query: 302 ATAHELMATYGWKTVDQAETYTK 324 A + + G T + Y + Sbjct: 296 ADITIIQSLLGHTTPSTTQIYAE 318 >gi|208703309|ref|YP_002267578.1| integrase/recombinase [Bacillus cereus H3081.97] gi|208658164|gb|ACI30531.1| integrase/recombinase [Bacillus cereus H3081.97] Length = 319 Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats. Identities = 44/291 (15%), Positives = 93/291 (31%), Gaps = 32/291 (10%) Query: 78 YRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH---TPSS- 132 Y+KS + + + ++ESY+ + GD + R + K P S Sbjct: 24 YKKSINYFIRWFEETHANYESYYTTFDKAVGDITLDHLIK--YREYLFETKSVTGKPYSL 81 Query: 133 --AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW-TKEDMQQFKSFWSE- 188 + ++ F + + + NP + + + E W T ++ + + + Sbjct: 82 ETIRLRVNCVKDFFSYLYEENVIESNPAKNFKNVRYVKESQVRWLTHDEKNRLLRYVEDP 141 Query: 189 ---------GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD 239 G + +L +GLR S+ ++ L N I++ K + + Sbjct: 142 KLIIKNEWRGYRNLAIINIMLLAGLRASEVSNLKLEDLDNGFILIRSSKGLKGRKLPINH 201 Query: 240 GFMKLL---------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGV 289 K+L + F++ K + F K G+ S H + Sbjct: 202 DLGKVLNKWLNVRNEKEQFSDSQYVFLSQRGSKFTEMGLTKLFITLEKKTGIEGLSPHTL 261 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340 R + G H + G +V Y ++ + ++S Sbjct: 262 RHTFCHDLVEKGTPIHIIADYAGHSSVKTTMIYVTSSNMEKK--TAVEKLS 310 >gi|171742561|ref|ZP_02918368.1| hypothetical protein BIFDEN_01674 [Bifidobacterium dentium ATCC 27678] gi|283456353|ref|YP_003360917.1| Integrase/recombinase [Bifidobacterium dentium Bd1] gi|306822472|ref|ZP_07455850.1| tyrosine recombinase XerD [Bifidobacterium dentium ATCC 27679] gi|309801397|ref|ZP_07695524.1| site-specific tyrosine recombinase XerC [Bifidobacterium dentium JCVIHMP022] gi|171278175|gb|EDT45836.1| hypothetical protein BIFDEN_01674 [Bifidobacterium dentium ATCC 27678] gi|283102987|gb|ADB10093.1| Integrase/recombinase [Bifidobacterium dentium Bd1] gi|304554017|gb|EFM41926.1| tyrosine recombinase XerD [Bifidobacterium dentium ATCC 27679] gi|308221912|gb|EFO78197.1| site-specific tyrosine recombinase XerC [Bifidobacterium dentium JCVIHMP022] Length = 306 Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats. Identities = 52/289 (17%), Positives = 99/289 (34%), Gaps = 39/289 (13%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQ---IIRKSGDFDYRKITTKHIRSGVE-- 124 T+ Y K L+ N+R ++ ++ + G D ++T + +R + Sbjct: 6 TIDAF-DAYLK--ANRGLSDNTRKAYRGDLEECMTQLEILGCEDLNEVTIEDLRMWMSQS 62 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 S++H SS + ++R F W + NP + PK ++ ++ Sbjct: 63 SKRHARSSMARKTVAVRGFFAWTHERGVTNANPAAMLMTPKIPDTLPAVLSESQAEKLMD 122 Query: 185 FWSE---------------GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQK 228 E G + E L +G+R ++ V + +N T K Sbjct: 123 CVDEQMPKSRTKSVRKQAVGLRNAAMLEVLYATGIRVAELVGLDVHDVAFDNRTMKVTGK 182 Query: 229 TGTIITVE------------LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAK 276 V L DG +L+ + F+ +++ Sbjct: 183 GNKQRVVPFGVPAEQSIRRWLEDGRPRLVRA--RSADALFLGAQGNRIDQRVVRQVVHEC 240 Query: 277 ATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 A +AGV + S H +R +AT D GA ++ G ++ + YT Sbjct: 241 AQRAGVPDISPHALRHSAATHLLDGGADLRQVQELLGHSSLKTTQRYTH 289 >gi|153930897|ref|YP_001385278.1| phage integrase family integrase/recombinase [Clostridium botulinum A str. ATCC 19397] gi|152926941|gb|ABS32441.1| integrase/recombinase, phage integrase family [Clostridium botulinum A str. ATCC 19397] Length = 331 Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats. Identities = 50/261 (19%), Positives = 91/261 (34%), Gaps = 13/261 (4%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR-KH-TPSS 132 IS Y + L++ + +++ I I +R + R KH SS Sbjct: 59 ISIYLAAKKLDGLSLKTLKNYKYNL-AIFADYLRKPLATINAMDLRMFLAQRCKHMKASS 117 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192 ++ ++ F W +EY+ NP L +++ K+ +E+++ + E + Sbjct: 118 VNGQISILKSFFGWLHMEEYIPKNPSLKLKQTKQPKRVRHALNEEEIEILRQAC-ETDRE 176 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELP----DGFMKLLAM 247 + EFL+ +G R S+ + N S K V K L Sbjct: 177 KALIEFLISTGCRLSEVIGVNKTDIDWNEMSLFVIGKGDKERKVYFNTKAKILLKKYLLT 236 Query: 248 TPIGKETFFINNDKQKMNATQFSIW--FKAKATKAGVNKS--AHGVRKFSATISADAGAT 303 F+ + K SI K A +A ++KS H R AT ++G Sbjct: 237 RSDENIALFVTSKKPHNRLGGRSIQREIKNIAIRAKIDKSIYPHLFRHSFATHKLNSGMP 296 Query: 304 AHELMATYGWKTVDQAETYTK 324 + G + + Y + Sbjct: 297 LPVIQHLMGHENPSTTQVYAE 317 >gi|312869134|ref|ZP_07729308.1| phage integrase, N-terminal SAM domain protein [Lactobacillus oris PB013-T2-3] gi|311095380|gb|EFQ53650.1| phage integrase, N-terminal SAM domain protein [Lactobacillus oris PB013-T2-3] Length = 295 Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats. Identities = 45/275 (16%), Positives = 103/275 (37%), Gaps = 24/275 (8%) Query: 74 LISEYRKS-AHWGSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIRSGVESRK-- 127 L+ +Y + N+ +S+ D ++ G + + + + + +K Sbjct: 4 LVDKYLAYLKGSQGRSANTLMSYRRDLDQAAAFLQAQGVGKWSAVDQYQLLALIAEQKKR 63 Query: 128 -HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE-GIRPWTKEDMQQFKS- 184 +P++ + L+++R +++ VR + + NP V+ + + T+ +++Q + Sbjct: 64 GRSPATINRQLSALRQFYRYLVRHQQLRFNPMELVDNQQLTEKLPPEILTEPEIKQLLAA 123 Query: 185 ---FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-ITVELPD- 239 + G + R L +G+R S+ V L +I I+ G V + D Sbjct: 124 PDQAHALGKRDRALLAVLATTGMRVSELVDLLVTDLHLDIKMIRLGSGGRRERLVPISDQ 183 Query: 240 ---GFMKLLAM-----TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289 + LA G++ F+N ++ + +AG+ K + + Sbjct: 184 AVQELKQYLAAVRPLLVAEGEQAVFVNAHGHQLTRQGVWKNLRTLVRQAGIEKAVTPRTL 243 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 R A +GA + G+ + + Y K Sbjct: 244 RYSFAVHLLRSGADGRLIQEMLGYSELRAIKPYLK 278 >gi|254670992|emb|CBA07733.1| site-specific recombinase [Neisseria meningitidis alpha153] Length = 305 Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats. Identities = 36/278 (12%), Positives = 85/278 (30%), Gaps = 24/278 (8%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD-------YRKITTKHIRSGV 123 Y ++ + ++ ++ +++ + ++ + + + Sbjct: 6 FAAHFDAYLENIVREGKSEHTVAAYRRDLEELFALLAQMPSEAEGGVPQGLSQRDFTAAL 65 Query: 124 ES---RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 R + + L+S R W V++ + +P ++ PK+ + +E + Sbjct: 66 RRLSQRGLNARTLARKLSSWRQYCAWLVKRGLMRADPTADIKPPKQPERVPKALPQEWLN 125 Query: 181 QFKSF-----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIIT 234 + + FE + SGLR S+ + + + G Sbjct: 126 RMLDLPVDGGDPLAVRDHALFELMYGSGLRVSEIHGLNADDVYLDEAWVHVTGKGRKQRQ 185 Query: 235 VELP----DGFMKL--LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK--AGVNKSA 286 V L + L T + F + +++ Q A + G + S Sbjct: 186 VPLTGKSVEALKNYLPLRQTASDGKALFTGRNGTRLSQRQIQKRLAQWAAQNGDGRHVSP 245 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R A A + G ++ + YTK Sbjct: 246 HMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTK 283 >gi|260186653|ref|ZP_05764127.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis CPHL_A] gi|289447315|ref|ZP_06437059.1| integrase [Mycobacterium tuberculosis CPHL_A] gi|289420273|gb|EFD17474.1| integrase [Mycobacterium tuberculosis CPHL_A] Length = 311 Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats. Identities = 44/274 (16%), Positives = 87/274 (31%), Gaps = 35/274 (12%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH----IRSGVESRKHTPSS-------- 132 +A N+ S+ + + + + V R+ P S Sbjct: 19 RGVAANTLSSYRRDLRRYSKHLEERGITDLAKVGEHDVSEFLVALRRGDPDSGTAALSAV 78 Query: 133 -AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----- 186 A + L ++R L ++A + V ++ +V P + T +++ Sbjct: 79 SAARALIAVRGLHRFAAAEGLVELDVARAVRPPTPSRRLPKSLTIDEVLSLLEGAGGDKP 138 Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFM 242 + R E L +G R S++ + + + + K G V + + Sbjct: 139 SDGPLTLRNRAVLELLYSTGARISEAVGLDLDDIDTHARSVLLRGKGGKQRLVPVGRPAV 198 Query: 243 KLL-----------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289 L A G F+N +++ + A +AG+ S H + Sbjct: 199 HALDAYLVRGRPDLARRGRGTAAIFLNARGGRLSRQSAWQVLQDAAERAGITAGVSPHML 258 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYT 323 R AT + GA + G +V + YT Sbjct: 259 RHSFATHLLEGGADVRVVQELLGHASVTTTQIYT 292 >gi|228915207|ref|ZP_04078802.1| DNA integration/recombination/invertion protein [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228844438|gb|EEM89494.1| DNA integration/recombination/invertion protein [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 369 Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats. Identities = 49/312 (15%), Positives = 109/312 (34%), Gaps = 38/312 (12%) Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVE 124 TLK ++ + + S+ ++ + + + + +I G K+ HI+ + Sbjct: 60 PSKVTLKEYLNHWLEIKS-MSIESSTFVVYRACINQHVIPSIGMITLHKLNVMHIQKCYK 118 Query: 125 SRKHTPSSAIQFLTSMRVL---FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 + + + L R+L AV+Q + NP E PK++ I+ WT+E++++ Sbjct: 119 TAINKGIANNSILLMHRILKSALNLAVKQNIITRNPSAFAEIPKKERTSIQTWTEEEVKK 178 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--------------NNIFSIKTQ 227 F S+ S+ + + + +G+R + Q + +N + Sbjct: 179 FL-LHSQESRYHIGYLLAITTGMRMGEVLGLRWQDVDFEKHTVTINQTSGHDNKIKKTAK 237 Query: 228 KTGTIITVELPDGFMKLLAMTPI--------------GKETFFINNDKQKMNATQFSIWF 273 + T+ +P ++ L I ++ N + + F F Sbjct: 238 TNSSKRTIPVPKETIESLKRHKILINKEKLRFGSAYQDQDLINCNEFGKIIKKAHFRKCF 297 Query: 274 KAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRL 331 + KAG+ + H +R ATI G + G + Y+ + Sbjct: 298 IRETHKAGIKEIKFHDLRHTHATILLKQGVNPKIISERLGHTDISMTLSVYSHVL--PNM 355 Query: 332 GIKNSRRISSVV 343 + + + Sbjct: 356 QEEAVKNFGKSI 367 >gi|145224084|ref|YP_001134762.1| site-specific tyrosine recombinase XerD [Mycobacterium gilvum PYR-GCK] gi|145216570|gb|ABP45974.1| tyrosine recombinase XerD [Mycobacterium gilvum PYR-GCK] Length = 314 Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats. Identities = 45/274 (16%), Positives = 91/274 (33%), Gaps = 35/274 (12%) Query: 85 GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKH----------TPS 131 +A N+ S+ + G D +T + + + + + Sbjct: 22 RGVAANTLSSYRRDLRRYAEHLKARGVGDLAAVTETDVSEFLVALRLGDPDGGVVPLSAV 81 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF--------K 183 SA + L ++R L ++A + AI+ V+ P + + +++ + Sbjct: 82 SAARALIAVRGLHRFAAAEGIAAIDVARDVKPPTPSRRLPKSLSIDEVLALLEAAGGDSE 141 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFM 242 + + R E L +G R S++ + + + + K G + + + Sbjct: 142 ADSPLTLRNRALLELLYSTGARISEAVGLDIDDVDTSARSVLLRGKGGKQRLIPIGRPAV 201 Query: 243 KLL-----------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289 L A G F+N +++ + A +AGV S H + Sbjct: 202 TALETYLVRGRPDLARRGRGTPAIFLNARGGRLSRQSAWQVLQDAAGRAGVTATVSPHVL 261 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYT 323 R AT D GA + G +V + YT Sbjct: 262 RHSFATHLLDGGADVRVVQELLGHASVTTTQIYT 295 >gi|148210|gb|AAA67607.1| unknown [Escherichia coli str. K-12 substr. MG1655] Length = 298 Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats. Identities = 41/270 (15%), Positives = 89/270 (32%), Gaps = 20/270 (7%) Query: 75 ISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITT------KHIRSGVESRK 127 + Y + L+ + ++++ + II + + + ++ + Sbjct: 8 VERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQCDVTMVRNFAVRSRRKG 67 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186 +S L+++R F W V Q + NP V PK + +DM + Sbjct: 68 LGAASLALRLSALRSFFDWLVSQNELKANPAKGVSAPKAPRHLPKNIDVDDMNRLLDIDI 127 Query: 187 --SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT--------IITVE 236 + R E + +GLR S+ ++HL + G+ V Sbjct: 128 NDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRKPVA 187 Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSA 294 + ++ L + + F++ ++ +A F K G+N H + A Sbjct: 188 WIEHWLDLRDLFGSEDDALFLSKLGKRXSARNVQKRFAEWGIKQGLNNHVHPHKLXHSFA 247 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTK 324 T ++ + G + + YT Sbjct: 248 THMLESSGDLRGVQELLGHANLSTTQIYTH 277 >gi|260774849|ref|ZP_05883751.1| tyrosine recombinase XerC [Vibrio coralliilyticus ATCC BAA-450] gi|260609274|gb|EEX35429.1| tyrosine recombinase XerC [Vibrio coralliilyticus ATCC BAA-450] Length = 309 Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats. Identities = 41/277 (14%), Positives = 95/277 (34%), Gaps = 23/277 (8%) Query: 77 EYRKSAHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGV---ESRKHTP 130 EY +S L+++++ +++ + + + G D+ ++ +R Sbjct: 21 EYLRSE--KGLSLHTQRNYKQQLETMAQHLVTMGLKDWSQVDAAWVRQLASKGMRDGMKA 78 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---WS 187 SS L+++R F + + + + NP V P++K + +++ Q Sbjct: 79 SSLATRLSALRSFFDFLILRGELTANPAKGVSAPRKKRPLPKNLDVDEVGQLLEVNEDDP 138 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE--------LP 238 + R E + +GLR ++ V+ + + I+ K V + Sbjct: 139 LAIRDRAMMELMYGAGLRLAEMVSVDVRDVSLSSGEIRVVGKGDKERKVPFAGMAEEWVA 198 Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATI 296 A+ + F++ +++ K V + S H +R AT Sbjct: 199 KWLKVRGALANTDEPALFVSKLGVRISHRNVQKRMAEWGQKQSVASHISPHKLRHSFATH 258 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 ++ + G + + + YT D L Sbjct: 259 MLESSNNLRAVQELLGHENISTTQIYTH-LDFQHLAD 294 >gi|254804308|ref|YP_003082529.1| site-specific recombinase [Neisseria meningitidis alpha14] gi|254667850|emb|CBA03883.1| site-specific recombinase [Neisseria meningitidis alpha14] Length = 305 Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats. Identities = 36/278 (12%), Positives = 84/278 (30%), Gaps = 24/278 (8%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD-------YRKITTKHIRSGV 123 Y ++ + ++ ++ +++ + ++ + + + Sbjct: 6 FAAHFDAYLENIVREGKSEHTVAAYRRDLEELFALLAQMPSEDAGGVPQDLSRRDFTAAL 65 Query: 124 ES---RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 R + + L+S R W V + + +P ++ PK+ + +E + Sbjct: 66 RRLSQRGLNARTLARKLSSWRQYCVWLVERGLLHTDPTADIKPPKQPERVPKALPQEWLN 125 Query: 181 QFKSF-----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIIT 234 + + FE + SGLR S+ + + + G Sbjct: 126 RMLDLPVDGGDPLAVRDHALFELMYGSGLRVSEIHGLNADDVYLDEAWVHVTGKGRKQRQ 185 Query: 235 VEL----PDGFMKL--LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK--AGVNKSA 286 V L + L T + F + +++ Q A + G + S Sbjct: 186 VPLVGKSVEALKNYLPLRQTASDGKALFTGRNGTRLSQRQIQKRLAQWAAQNGDGRHVSP 245 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R A A + G ++ + YTK Sbjct: 246 HMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTK 283 >gi|90581049|ref|ZP_01236849.1| tyrosine recombinase [Vibrio angustum S14] gi|90437745|gb|EAS62936.1| tyrosine recombinase [Vibrio angustum S14] Length = 301 Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats. Identities = 36/278 (12%), Positives = 88/278 (31%), Gaps = 21/278 (7%) Query: 68 PTTLKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV--- 123 P TL+ + + + L+++++ +++ ++ + + Sbjct: 3 PRTLEQPLERFYEYLRSERELSLHTQQNYKRQLTRVAEQLVELSVDNWQQVDAGWVRQIA 62 Query: 124 ---ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 SS L+++R F + V Q + NP V P++ + ++M Sbjct: 63 SKGMRDGLKASSLAMRLSALRSFFDFLVHQNVLKANPAKGVAAPRKARPLPKNLDVDEMN 122 Query: 181 QFKSF---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-- 235 Q + R E + +GLR ++ V+H+ + ++ G V Sbjct: 123 QLLDVNDDDPLAIRDRAMMELMYGAGLRLAELVGIDVRHISLSKGDLRVIGKGDKERVVP 182 Query: 236 -------ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSA 286 + + + F++ +++ K V + + Sbjct: 183 FSGLAREWIAKWLKLRDNIAQAEEPALFVSKLGTRISTRNVQKRMAEWGQKQAVSSHINP 242 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R AT ++ + G + + YT Sbjct: 243 HKLRHSFATHMLESSGDLRAVQELLGHANLSTTQIYTH 280 >gi|86159117|ref|YP_465902.1| tyrosine recombinase XerC [Anaeromyxobacter dehalogenans 2CP-C] gi|85775628|gb|ABC82465.1| Tyrosine recombinase XerC [Anaeromyxobacter dehalogenans 2CP-C] Length = 342 Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats. Identities = 53/302 (17%), Positives = 99/302 (32%), Gaps = 31/302 (10%) Query: 59 EYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF--DYRKITT 116 +P + P L+ Y S + ++R +++ Q D + Sbjct: 3 PDAAAPTELPEELRRF-DAYLASE--KRASPHTRKAYQVDLAQYAAYLADQGQPLVPSSP 59 Query: 117 KHIRSGVESRKHTPSSAI--QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174 +R + + + + L+++R L+++ VR+ NP +V PKR Sbjct: 60 ALVRGFLARQAGAAGAVSLGRKLSALRSLYRFLVREGLAPGNPARAVASPKRPKRLPEVL 119 Query: 175 TKEDMQQFKS------FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-Q 227 +E++ + R E L SGLR S+ ++ L ++ Sbjct: 120 PEEEVAALVETPDAAGEAPLALRDRAFLELLYGSGLRVSELTGLDLEDLDLAGGLVRVLG 179 Query: 228 KTGTIITVEL-----------PDGFMKLLAMTPI---GKETFFINNDKQKMNATQFSIWF 273 K V DG +LA P E F+N ++ + + Sbjct: 180 KRNKERIVPFGAPAAEALRRYLDGARPVLAAGPDHAGAAEAVFLNFRGGRLTSRSVARRL 239 Query: 274 KAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 +G+ + H +R AT GA + G ++ + YT D RL Sbjct: 240 DGWVLASGLPRHVHPHVLRHCFATHLLGNGADLRGIQELLGHASLSTTQRYTH-LDWKRL 298 Query: 332 GI 333 Sbjct: 299 AA 300 >gi|27364549|ref|NP_760077.1| site-specific tyrosine recombinase XerC [Vibrio vulnificus CMCP6] gi|320154951|ref|YP_004187330.1| tyrosine recombinase XerC [Vibrio vulnificus MO6-24/O] gi|34222789|sp|Q7ZAI9|XERC_VIBVU RecName: Full=Tyrosine recombinase xerC gi|71153412|sp|Q7MQB9|XERC_VIBVY RecName: Full=Tyrosine recombinase xerC gi|27360668|gb|AAO09604.1| tyrosine recombinase XerC [Vibrio vulnificus CMCP6] gi|319930263|gb|ADV85127.1| tyrosine recombinase XerC [Vibrio vulnificus MO6-24/O] Length = 316 Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats. Identities = 34/280 (12%), Positives = 86/280 (30%), Gaps = 22/280 (7%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV------ESRK 127 + ++ + L+++++ +++ + + + Sbjct: 17 LDQFYEYLRAEKGLSLHTQRNYKQQLETMAEHLHSMGLKAWPQVDAGWVRQLAGKGMREG 76 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-- 185 SS L+S+R F + + + + NP V P++K + +++ Q Sbjct: 77 MKASSIATRLSSLRSFFDFLILRGILTANPAKGVSAPRKKRPLPKNLDVDEVNQLLEVNE 136 Query: 186 -WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE------- 236 + R E + +GLR ++ V+ + I+ K V Sbjct: 137 DDPLAIRDRAIMELMYGAGLRLAELVDIDVRDVHLRSGEIRVIGKGNKERKVPFAGMAVE 196 Query: 237 -LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFS 293 + + + F++ +++ K V + + H +R Sbjct: 197 WVGKWLKVRSGLADPSEPALFVSKLGTRISHRSVQKRMAEWGQKQAVASHITPHKLRHSF 256 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 AT ++ + G + + + YT D L Sbjct: 257 ATHILESSNNLRAVQELLGHENISTTQIYTH-LDFQHLAD 295 >gi|262091779|gb|ACY25367.1| site-specific recombinase XerD [uncultured actinobacterium] Length = 308 Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats. Identities = 47/268 (17%), Positives = 89/268 (33%), Gaps = 30/268 (11%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKIT---TKHIRSGVESRKHTPSSAIQFLTSMR 141 LA NS ++ + G ++ + K + +S + +++R Sbjct: 23 RGLAANSIAAYRRDLVKFSIFLGSKSLSEVDSNAINDFEISLREAKLSVASINRVDSTLR 82 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ-----QFKSFWSEGSQPRLAF 196 FK ++QEY +P L + K + T + ++ ++ + Sbjct: 83 SFFKH-LQQEYGYADPTLEIAPQKSARRLPKALTISQIVSMIDVAYREGQPITARDQAML 141 Query: 197 EFLLYSGLRCSDSCRAGVQHL------QNNIFSIKTQKTG-TIITVELPDGFMKLLA--- 246 E L SG R S+ + L + ++K + G V L K + Sbjct: 142 ELLYSSGARVSELIGINLNDLSSIDTSDGKVTTLKLRGKGAKERIVPLGSFATKAVENYL 201 Query: 247 -------MTPIGKET--FFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSAT 295 + K T F+N+ +++ A AG+ + S H R AT Sbjct: 202 VRVRPDLASKSSKVTSALFLNSRGSRISRQSAWQMVLDAADAAGITEHVSPHVFRHSYAT 261 Query: 296 ISADAGATAHELMATYGWKTVDQAETYT 323 + GA + G +V + YT Sbjct: 262 HLLNGGADIRVVQELLGHASVTTTQIYT 289 >gi|269214488|ref|ZP_05986672.2| tyrosine recombinase XerC [Neisseria lactamica ATCC 23970] gi|269209617|gb|EEZ76072.1| tyrosine recombinase XerC [Neisseria lactamica ATCC 23970] Length = 334 Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats. Identities = 37/281 (13%), Positives = 84/281 (29%), Gaps = 24/281 (8%) Query: 68 PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD-------YRKITTKHIR 120 P Y ++ + ++ ++ +++ + ++ + Sbjct: 32 PDGFAAHFDAYLENIVREGKSEHTVAAYRRDLEELFALLAQMPSEAEGGVPQDLSRRDFT 91 Query: 121 SGVES---RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177 + + R + + L+S R W V++ + +P + PK+ + +E Sbjct: 92 AALRRLSQRGLNARTLARKLSSWRQYCAWLVKRGLMCADPTAGISPPKQPQRIPKALPQE 151 Query: 178 DMQQFKSF-----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-T 231 + + + FE + SGLR S+ + + + G Sbjct: 152 WLNRMLDLPVDGGDPLAVRDHALFELMYGSGLRVSEIHGLNADDVYLDEAWVHVTGKGRK 211 Query: 232 IITVELPDGFMKLL------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATK--AGVN 283 V L + L T + F + +++ Q A G + Sbjct: 212 QRQVPLTGKSAEALKNYLPLRQTASDGKALFTGRNGTRLSQRQIQKRLAQWAAINGDGRH 271 Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 S H +R A A + G ++ + YTK Sbjct: 272 VSPHMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTK 312 >gi|225175747|ref|ZP_03729740.1| integrase family protein [Dethiobacter alkaliphilus AHT 1] gi|225168671|gb|EEG77472.1| integrase family protein [Dethiobacter alkaliphilus AHT 1] Length = 300 Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats. Identities = 44/269 (16%), Positives = 89/269 (33%), Gaps = 25/269 (9%) Query: 85 GSLAVNSRISFESYF----DQIIRKS--GDFDYRKITTKHIRSGV----ESRKHTPSSAI 134 L+ + + ++R+ ++ TKH+R + + R + + Sbjct: 20 RGLSDRTVDGYRMDIGVFARLMVREFFPQGMVLNQLETKHVRRFLVYLKKERDNNAGTRN 79 Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQFKSFWSEGS 190 + L S+R FK+ YV NP + K T ++ + K Sbjct: 80 RKLASLRSYFKFLEIHGYVEKNPVQQLRNVKTAKLLPVFLTIDESDRLINAAKKQAKPPY 139 Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPD----GFMKLL 245 + LL +G R + + +L ++ K + L D + L Sbjct: 140 RDHAMMRVLLQTGCRVEELVSLNIGNLNLEEKYMRIIGKGNKERMIPLTDKTCAALAEYL 199 Query: 246 AMTPIGKE---TFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKFSATISAD 299 E F+N+ ++ + F +AG+N+ + H +R T+ + Sbjct: 200 EARVPKDEKEKAVFLNHLGMRITYPGVQLVFNRLCEEAGLNRGRLTVHKLRHTCFTMLMN 259 Query: 300 AGATAHELMATYGWKTVDQAETYTKGADR 328 AG + G +++ E Y R Sbjct: 260 AGVDLPTIKDIAGHESISSTEIYVHVTQR 288 >gi|300723777|ref|YP_003713084.1| Tyrosine recombinase xerC 2 [Xenorhabdus nematophila ATCC 19061] gi|297630301|emb|CBJ90955.1| Tyrosine recombinase xerC 2 [Xenorhabdus nematophila ATCC 19061] Length = 342 Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats. Identities = 39/293 (13%), Positives = 97/293 (33%), Gaps = 32/293 (10%) Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR--SGV 123 + P TL+ + Y + + ++ ++ + D R + Sbjct: 2 ETPPTLRQQLEAYLDTVVDRGYSKRTQEAYRERLRPFVDWCELRDVRHAPQVSLALLESW 61 Query: 124 ESRKHTPSSAI----------QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI-R 172 + + A L+++R F+W +++ ++ NP + PK + + Sbjct: 62 QRYLRSYRKADGQYYTSGGLINRLSALRGWFRWLLKRHHILYNPAELLTMPKEEKRLPAQ 121 Query: 173 PWTKEDMQQ----FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKT 226 ++ + + G + R E +G+R ++ + + + ++ Sbjct: 122 VLSETETETVLMSIDIQTPLGLRNRALLEVFWSTGIRRNELINLKLSDIDSGRGVIMVRQ 181 Query: 227 QKTGTIITVELPDGFMKLLA----------MTPIGKETFFINNDKQKMNATQFSIWF-KA 275 K V + + + + FI Q + + ++ + Sbjct: 182 GKGRKDRVVPIGERALAWVNRYLADVRPRLAWKYDSGYLFITLKGQPLARSTVTLMAGRT 241 Query: 276 KATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 +A +NK + H R AT + GA + A G + ++ + YT+ A Sbjct: 242 IRQQARLNKPGTCHVFRHSMATQMLENGADTRHIQAILGHEKLETTQIYTRVA 294 >gi|297170713|gb|ADI21736.1| site-specific recombinase XerD [uncultured actinobacterium HF0130_15N16] Length = 317 Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats. Identities = 45/303 (14%), Positives = 104/303 (34%), Gaps = 32/303 (10%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQII-----RKSGDFDYRKITTKHIRSGVESRKHT 129 + ++ S +L ++R S+ + R + T + + Sbjct: 14 VEQFMHSLESRNLQESTRYSYGRDLESFRSWLDGRGEEIMMVEEGTINSYVAHLRKSGRA 73 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 PS + S+R +K+ + ++ ++P ++ K + E +++ + G Sbjct: 74 PSGVARATVSIRSFYKYLTLEGHIKVDPGAAIAVLKVPQGFPKAIDIEKVERLLNT-PVG 132 Query: 190 -----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVEL------ 237 + R E L +GLR S+ V + ++ K V L Sbjct: 133 EGPYVLRDRAILETLYGAGLRVSELTALVVDDVDLEDSFLRVFGKGRKERVVPLGGHAKD 192 Query: 238 ----------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKS 285 + ++ T + F+N ++ + +AG+ + + Sbjct: 193 ALAAWMSGAGREVLLERRKRTDQAQRNVFLNKFGNPLSRKGTWAIVRRHGLRAGLGDDLT 252 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT--KGADRIRLGIKNSRRISSVV 343 H +R AT +AGA+ + G ++ + YT + A+ + ++ R S+ + Sbjct: 253 PHVLRHSCATHMLEAGASIRHVQELLGHSSIRSTQVYTGRREAELKAIYLEKHPRASAHL 312 Query: 344 DSD 346 D Sbjct: 313 MED 315 >gi|167037592|ref|YP_001665170.1| site-specific tyrosine recombinase XerC [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|256750822|ref|ZP_05491707.1| integrase family protein [Thermoanaerobacter ethanolicus CCSD1] gi|320116007|ref|YP_004186166.1| integrase family protein [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166856426|gb|ABY94834.1| phage integrase family protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|256750405|gb|EEU63424.1| integrase family protein [Thermoanaerobacter ethanolicus CCSD1] gi|319929098|gb|ADV79783.1| integrase family protein [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 330 Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats. Identities = 49/268 (18%), Positives = 91/268 (33%), Gaps = 25/268 (9%) Query: 99 FDQIIRKSGDFDYRKITTKHIRSGV-------ESRKHTPSSAIQFLTSMRVLFKWAVRQ- 150 FD+I D D I + + R +TP + + + S+R + + ++ Sbjct: 66 FDEI--DISDVDVDLIESVDLNDLYAYLNFVANERSNTPHARARKVASLRSFYNYLYKKA 123 Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR--LAFEFLLYSGLRCSD 208 + ++ NP +E PK T ++ ++ + + R L GLR S+ Sbjct: 124 KVLSKNPTQELESPKLSVRQPIYLTLDESKKLLNSIDGPFKERDYAIITLFLNCGLRVSE 183 Query: 209 SCRAGVQHLQNNIFSIKTQKTGTIITVELPDG--------FMKLLAMTPIGKETFFINND 260 + ++++ ++ K TV L D K+ F++ Sbjct: 184 LVNINLDDIKDDKLTVI-GKGNKQRTVYLNDACINAINTYLKVRPKEGVKDKKALFLSKR 242 Query: 261 KQKMNATQFSIWFKAKATKA---GVNKSAHGVRKFSATISADAG-ATAHELMATYGWKTV 316 ++++ K A G SAH +R +AT+ G L G V Sbjct: 243 LKRISVKTVQYTVKKHLKNANLEGKKYSAHKLRHTAATLMYRYGNVDIRTLQKLLGHSNV 302 Query: 317 DQAETYTKGADRIRLGIKNSRRISSVVD 344 + YT D N +S D Sbjct: 303 STTQIYTHVDDSQLKEAVNKNPLSQKED 330 >gi|91774554|ref|YP_544310.1| tyrosine recombinase XerC subunit [Methylobacillus flagellatus KT] gi|91708541|gb|ABE48469.1| tyrosine recombinase XerC subunit [Methylobacillus flagellatus KT] Length = 291 Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats. Identities = 39/270 (14%), Positives = 88/270 (32%), Gaps = 18/270 (6%) Query: 73 WLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES---RKH 128 ++ Y + + L++ + + + + + HIR + + R Sbjct: 2 DVLQRYLEYLQFERGLSLLTVKHYRRDLELLFDLKSGMALDALQPSHIRRFIATLHGRGL 61 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 + + + L+ R F + V++ NPC + PK + + Q E Sbjct: 62 SGKTIARHLSGWRGFFDYLVKRHGATCNPCHDMRAPKSPKSLPKALAIDQAVQLVDMKGE 121 Query: 189 GS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------E 236 + + E SGLR S+ + L + ++K G+ + Sbjct: 122 DVLSIRDKAILELFYSSGLRLSEVTGLNIGDLNLHEGTVKVLGKGSKSRIVPIGRHAIQA 181 Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294 + D ++ F+N + ++++ K A + G+ N H +R A Sbjct: 182 MQDWLAVRQPAISSDEQAVFLNRNGRRISGRAIQYRIKQWAIRRGISSNVHPHMLRHSFA 241 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTK 324 + + + G + + YT Sbjct: 242 SHVLQSSGDLRAVQEMLGHANISTTQVYTH 271 >gi|165977242|ref|YP_001652835.1| site-specific tyrosine recombinase XerC [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|307257905|ref|ZP_07539660.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|165877343|gb|ABY70391.1| integrase/recombinase XerC [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|306863592|gb|EFM95520.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar 10 str. D13039] Length = 336 Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats. Identities = 36/259 (13%), Positives = 89/259 (34%), Gaps = 19/259 (7%) Query: 85 GSLAVNSRISFESYFDQIIR---KSGDFDYRKITTKHIRSGV---ESRKHTPSSAIQFLT 138 + ++ +++ + ++G ++++ + +R + + S L Sbjct: 53 KQASQHTLSNYQRQLLAVSDMLSQAGISTWQEVNSATVRWIIAQSNKQGLGAKSIALRLV 112 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS---FWSEGSQPRLA 195 ++R F + +RQE +++NP + ++ PK + E +Q + + Sbjct: 113 ALRQWFSYLIRQEKMSVNPAVGIKAPKASKRLPKNIDAEQAKQLLTSDSHEPSDLRDLAM 172 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMT------ 248 E + SGLR S+ + + ++ K V + ++ L Sbjct: 173 MELMYSSGLRLSELQGLDLGDMDLAGREVRLLGKGNKERIVPIGSKALEALNRWLAVRNQ 232 Query: 249 -PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAH 305 F+N +++ + + K G+ + H +R AT +A Sbjct: 233 FKPQDNAVFLNKRGGRLSHRSIQLVMQKWGEKQGLESHLHPHKLRHSFATHMLEASGDLR 292 Query: 306 ELMATYGWKTVDQAETYTK 324 + G + + YT Sbjct: 293 AVQELLGHSNLATTQIYTH 311 >gi|320321214|gb|EFW77351.1| phage integrase family site specific recombinase [Pseudomonas syringae pv. glycinea str. B076] Length = 320 Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats. Identities = 54/277 (19%), Positives = 107/277 (38%), Gaps = 32/277 (11%) Query: 84 WGSLA-VNSRISFESYFDQIIRKSGDF---DYRKITTKHI---RSGVESRKHTPSSAIQF 136 + +L +R ++++ G D+R++T H+ R+ +E R ++ + Sbjct: 33 FANLDNPRTRRAYQNDLTDFSSFIGLASADDFRQVTRSHVLAWRADLEQRGLAGATIRRK 92 Query: 137 LTSMRVLFKWAVRQE-YVAINPCLSVERPKRKT-EGIRPWTKED-----MQQFKSFWSEG 189 L ++ LF + NP V+RP+ ++ EG P + ++ +G Sbjct: 93 LAALASLFDHLLDNNAVAGGNPVHGVKRPRIESNEGKTPALGDHQAKALLEAPDESTLKG 152 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKT-QKTGTIITVELPDG------ 240 + R LLY GLR ++ + V + + I +K K G + + L Sbjct: 153 RRDRAMLAVLLYHGLRREEAAQLQVSDIQERRGIQHLKIHGKGGKVRYLPLHPVAAGRIH 212 Query: 241 --FMKLLAMTPIGKETFFINNDKQ----KMNATQFSIWFKAKATKAGV---NKSAHGVRK 291 + K FI+ + ++A +A A KAG+ HG+R Sbjct: 213 LYLERSGHHLDDKKVPLFISLRGKSTGAGVSANGIYTVVEAYAKKAGIEVDGLGVHGLRA 272 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 +AT + + A ++ A G + + Y + +R Sbjct: 273 TAATNALEHEADIAKVQAWLGHANISTTKIYDRRENR 309 >gi|161610765|ref|YP_067311.2| site-specific tyrosine recombinase XerD [Rickettsia typhi str. Wilmington] Length = 306 Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats. Identities = 49/287 (17%), Positives = 101/287 (35%), Gaps = 39/287 (13%) Query: 75 ISEYRKSA-HWGSLAVNSRISFESYFDQI-----IRKSGDFDYRKITTKHIRSGVESRKH 128 I ++ + +L+ NS +S++ +K + + + + S Sbjct: 4 IEQFLEMLLAERALSKNSILSYKRDLLDFHNYLTKQKISELNITTRNIRKWIEYLASNNL 63 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-- 186 S + +++++ + + + + + A NP L+V+ PK + + + + ++ + Sbjct: 64 HARSINRKISTIKSYYTFLISENHTAFNPVLNVDLPKYQNKLPVILSIDQIKLILEYCSK 123 Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN---------IFSIKTQKTGTIIT 234 EG + L SGLR S+ + + N IFS+ + + Sbjct: 124 DHTPEGIRLNAMIHLLYASGLRVSELVSLKLADILTNNTSKGIVRKIFSVLGKGNKERVI 183 Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQK--------------MNATQFSIWFKAKATKA 280 V + + I F+N K K M F+I K+ A Sbjct: 184 VINDQAVLSITKYLKIRD--IFVNKAKSKNLIYLFPSSAVAGYMTRQNFAILLKSVALDI 241 Query: 281 GVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 G+N S H +R A+ + GA + G + + YT Sbjct: 242 GLNPKNVSPHILRHSFASHLLEGGADLRVIQELLGHADISTTQIYTH 288 >gi|256371915|ref|YP_003109739.1| integrase family protein [Acidimicrobium ferrooxidans DSM 10331] gi|256008499|gb|ACU54066.1| integrase family protein [Acidimicrobium ferrooxidans DSM 10331] Length = 299 Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats. Identities = 47/258 (18%), Positives = 94/258 (36%), Gaps = 18/258 (6%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKIT--TKHIRSGVES--RKHTPSSAIQFLTSM 140 + + I++ S + + R + +RS V++ R+ +P + +++ Sbjct: 20 ADRSELTAIAYRSDLEAVATWLEARGSRLLDASPALLRSWVDAAGRERSPRGVQRAASAL 79 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK----SFWSEGSQPRLAF 196 R LF++A R A +P + P R ++++++ + G++ R Sbjct: 80 RGLFRYAQRVGARADDPMEGIHAPGTAVALPRALARDEVERLIESVGTADVAGARDRAIL 139 Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL--------AMT 248 E L SG+R S+ C + + + K G V + L Sbjct: 140 EVLYGSGVRVSELCGFTLDTIAQGRWVPVVGKRGRERLVPISAPARDALEQWVVRWRPQL 199 Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHE 306 F+N + + K +A++ G+ S H +R A +AGA Sbjct: 200 APKHRMLFVNLRGAPITRQGVWLVLKQRASRVGLGDRVSPHVLRHSLAVHMVEAGADLRV 259 Query: 307 LMATYGWKTVDQAETYTK 324 + G ++ E YTK Sbjct: 260 VQEILGHASLATTELYTK 277 >gi|156972655|ref|YP_001443562.1| site-specific tyrosine recombinase XerC [Vibrio harveyi ATCC BAA-1116] gi|166918907|sp|A7N0V8|XERC_VIBHB RecName: Full=Tyrosine recombinase xerC gi|156524249|gb|ABU69335.1| hypothetical protein VIBHAR_00307 [Vibrio harveyi ATCC BAA-1116] Length = 313 Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats. Identities = 36/278 (12%), Positives = 91/278 (32%), Gaps = 21/278 (7%) Query: 68 PTTLKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV--- 123 P +L+ + + + L+++++ +++ + + + + + Sbjct: 10 PNSLQKPLERFYEFLRSEKGLSLHTQRNYKQQLETMAHHLAEMGLKDWSQVDAGWVRQLA 69 Query: 124 ---ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 SS L+S+R F + + + + NP V P++K + +++ Sbjct: 70 GKGMREGMKASSLATRLSSLRSFFDFLILRGEMLANPAKGVSAPRKKRPLPKNLDVDEVN 129 Query: 181 QFKSF---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE 236 Q + R E + +GLR ++ V+ +Q ++ K V Sbjct: 130 QLLEVNEDDPLAVRDRAMMELMYGAGLRLAELVSVDVRDVQLRSGELRVIGKGDKERKVP 189 Query: 237 --------LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSA 286 + + G+ F++ +++ K V + S Sbjct: 190 FSGMATEWVGKWLRVRGDLAAPGEPALFVSKLGTRISHRSVQKRMAEWGQKQSVASHISP 249 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R AT ++ + G + + + YT Sbjct: 250 HKLRHSFATHMLESSNNLRAVQELLGHENISTTQIYTH 287 >gi|302391937|ref|YP_003827757.1| integrase family protein [Acetohalobium arabaticum DSM 5501] gi|302204014|gb|ADL12692.1| integrase family protein [Acetohalobium arabaticum DSM 5501] Length = 310 Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats. Identities = 47/267 (17%), Positives = 93/267 (34%), Gaps = 27/267 (10%) Query: 94 SFESYFDQIIR-KSGDFDYRKITTKHIRSGVES----RKHTPSSAIQFLTSMRVLFKWAV 148 F Y ++ + + I + + + ++P + + L S+R F++ Sbjct: 37 VFGRYLEKEFDCNLEELNVTNINRFEVSEFLSDIILVKDNSPEARNRKLYSLRSFFEYLK 96 Query: 149 RQEYVAINPCLSVERPKRK-TEGIRPWTKEDMQQFKSFWSEG-----SQPRLAFEFLLYS 202 ++ + NP S+E K + +++M+++ S+ + LYS Sbjct: 97 KRNIIKNNPTDSIEASKSELKSEPIYLNEKNMEKYLEAIKNYNSKYCSRDLAINKLFLYS 156 Query: 203 GLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELP--------DGFMKLLAMTP---I 250 GLR S+ + + SIK K V L D +TP Sbjct: 157 GLRISELVNLNLDDINYEDQSIKFFGKGNKERYVPLHQEALTAIKDYLPDRNKITPKNQD 216 Query: 251 GKETFFINNDKQKMNATQFSIWFKAKATKAGV----NKSAHGVRKFSATISADAGATAHE 306 ++ F++N +++++ K A KAGV + H +R A++ Sbjct: 217 ARQALFLSNQRRRISVRTIQKMVKKYAKKAGVRNASKITPHKLRHTFASLLYQKTKDLRV 276 Query: 307 LMATYGWKTVDQAETYTKGADRIRLGI 333 L G + + YT R Sbjct: 277 LQDLLGHSDISTTQIYTHTDKEQRKSA 303 >gi|67458963|ref|YP_246587.1| site-specific tyrosine recombinase XerD [Rickettsia felis URRWXCal2] gi|75536599|sp|Q4UM01|XERD_RICFE RecName: Full=Tyrosine recombinase xerD gi|67004496|gb|AAY61422.1| Tyrosine recombinase XerD [Rickettsia felis URRWXCal2] Length = 306 Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats. Identities = 53/287 (18%), Positives = 106/287 (36%), Gaps = 39/287 (13%) Query: 75 ISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDYRK--ITTKHIRSGVESRKHT-- 129 IS++ + +L+ NS +S++ + ITT+++R +E Sbjct: 4 ISQFLEMLLAERALSKNSILSYKRDLFDFQNYLAKQRLSELNITTENVRDWIEYLASNDL 63 Query: 130 -PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-- 186 S + +++++ +++ + + + A NP L+V+ PK + + + + ++ + Sbjct: 64 QARSINRKISTIKSYYEFLISENHTAFNPVLNVDLPKYQNKLPEILSIDQIKSLLEYCSQ 123 Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN---------IFSIKTQKTGTIIT 234 EG + L SGLR S+ + + N IFS+ + + Sbjct: 124 DNSPEGIRLNAMIHLLYASGLRVSELVSLKLTDILTNKTSKGEVRKIFSVLGKGNKERVI 183 Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQK--------------MNATQFSIWFKAKATKA 280 V + + I F+N K K M F+I K+ A A Sbjct: 184 VINEQAVISIAKYLAIRD--VFVNKAKPKNLIYLFPSSALAGYMTRQNFAILLKSAALYA 241 Query: 281 GVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 +N S H +R A+ + GA + G + + YT Sbjct: 242 NLNPEHISPHILRHSFASHLLEGGADLRVIQGLLGHADISTTQIYTH 288 >gi|224476375|ref|YP_002633981.1| putative site-specific recombinase XerC [Staphylococcus carnosus subsp. carnosus TM300] gi|254799358|sp|B9DPG4|XERC_STACT RecName: Full=Tyrosine recombinase xerC gi|222420982|emb|CAL27796.1| putative site-specific recombinase XerC [Staphylococcus carnosus subsp. carnosus TM300] Length = 296 Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats. Identities = 39/262 (14%), Positives = 96/262 (36%), Gaps = 20/262 (7%) Query: 88 AVNSRISFESYFDQI--IRKSGDFDYRKITTKHIRSGVE---SRKHTPSSAIQFLTSMRV 142 + ++ S+ Q + + K R+ + S+ ++ + ++++R Sbjct: 19 SKHTLKSYHDDLVQFNAFLEHEHLKLKSFEYKDARNYLSFLYSKGLKRTTVSRKISTLRS 78 Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRLAFEF 198 +++ + Q+ +NP + + PK++ + +E+M G + R+ E Sbjct: 79 FYEFWMTQDDTVVNPFVQLVHPKKEQYLPHFFYEEEMSALFETVEADGHKGLRDRVILEL 138 Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE----LPDGFMKLLAMTP---- 249 L +G+R S+ ++ L N +K K + + + L + P Sbjct: 139 LYGTGIRVSELVNIKLEDLDLNSPGVKVLGKGNKERFIPFGNMCRESIERYLELFPPIQN 198 Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATK-AGV-NKSAHGVRKFSATISADAGATAHEL 307 + + +N + + + + AGV + H +R AT + GA + Sbjct: 199 VKHDYLLVNINGRPITERGVRYVLNDIVKRTAGVTDIHPHKLRHTFATHMLNEGADLRTV 258 Query: 308 MATYGWKTVDQAETYTKGADRI 329 + G + YT +++ Sbjct: 259 QSLLGHVNLSTTGRYTHVSNQQ 280 >gi|160900140|ref|YP_001565722.1| integrase family protein [Delftia acidovorans SPH-1] gi|160365724|gb|ABX37337.1| integrase family protein [Delftia acidovorans SPH-1] Length = 342 Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats. Identities = 57/338 (16%), Positives = 110/338 (32%), Gaps = 34/338 (10%) Query: 7 LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66 LP V + G ++ R +RI +PA AL + + Sbjct: 8 LPKRVYE----KGGAYWHVRAEGKKRIWARLSTIRDGLPALYRALAAMEQADQTRD---- 59 Query: 67 KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126 ++ LI+++ +V ++ + I +F +++T I ++ Sbjct: 60 ---SMAALIADWLAEVG-SRHSVKTQANDAYQTRTISESFQEFRAQEVTAPAIVEFLKHF 115 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVA--INPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 P + + + +R L ++A + Y NP S++ K R T ++++ K Sbjct: 116 SDKPRTYNAYRSMLRELMRFAEEKGYRPPGTNPVDSLKTMSVKAR-TRYITDSEVRRIKV 174 Query: 185 ---FWSEGSQPR------LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK----TGT 231 + +G + R + +G R D + + + K TG Sbjct: 175 AVMYGDDGKRTRSGHTICALIDMAYLTGQRIGDLLTLRWSDVGKQGITFQPAKTEGSTGA 234 Query: 232 IITVELPDGFMKL---LAMTPIGKETF-FINNDKQKMNATQFSIWFKAKATKAGV-NKSA 286 + + + L P F F Q + S +K +AGV + Sbjct: 235 QVLIAWTQRLRNVVDRLRALPNQSPDFVFCTLQGQPYTYSGASTAWKRAVKRAGVKDCHF 294 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R + T D G E T Q Y + Sbjct: 295 HDLRGKALTDV-DRGRGIMEAQRMGAHSTQSQTADYVR 331 >gi|210634278|ref|ZP_03298051.1| hypothetical protein COLSTE_01973 [Collinsella stercoris DSM 13279] gi|210158880|gb|EEA89851.1| hypothetical protein COLSTE_01973 [Collinsella stercoris DSM 13279] Length = 302 Score = 118 bits (295), Expect = 1e-24, Method: Composition-based stats. Identities = 45/286 (15%), Positives = 90/286 (31%), Gaps = 31/286 (10%) Query: 75 ISEYRKSAH-WGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKHTP 130 EY +L+ + ++ + G +T + + V R+ T Sbjct: 8 CREYLGHLSVERNLSPYTVAAYRRDLEAYRAFLAERGVTGPDSVTRRDVEDFVAHRRETG 67 Query: 131 SS---AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQFK 183 ++ + L++++ L ++ VR+ P ++ PK + + + Q Sbjct: 68 AADASVNRALSAVKGLHRFLVREGISTTYPTSAIRTPKAAKHLPDVISIDQACALLDQPF 127 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELP---- 238 + G++ A E L GLR S+ V+ L + F + K + Sbjct: 128 PATAAGARDHAALEVLYGCGLRVSELTGLDVRDLHLDEEFLLVMGKGSKERLAPITGSAL 187 Query: 239 ------------DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-S 285 D M + F+N +++ + G+ Sbjct: 188 RALEAYLTLGARDELMGHARAAGVS-PAVFLNARGTRLSRQSVHAICERYGRMVGIEGLH 246 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 H +R AT GA L G + + YT D+ +L Sbjct: 247 PHTLRHSFATHMLAGGADLRVLQEILGHADIATTQIYTH-VDQTQL 291 >gi|254488719|ref|ZP_05101924.1| tyrosine recombinase XerD [Roseobacter sp. GAI101] gi|214045588|gb|EEB86226.1| tyrosine recombinase XerD [Roseobacter sp. GAI101] Length = 324 Score = 118 bits (295), Expect = 1e-24, Method: Composition-based stats. Identities = 41/287 (14%), Positives = 95/287 (33%), Gaps = 32/287 (11%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGV---E 124 T W+ + A + N+++++ D+ + T + + + Sbjct: 5 TYHWISTFLEAQAAELGASTNTQLAYGRDLKDFDSFLAGRHLDFARATRDDVERYLVWCD 64 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 ++ S+ + L++++ ++++A + + + NP + + P + + ++ ++ + Sbjct: 65 AQGLAKSTRARRLSAIKQIYRFAFEESWRSDNPAIQISGPGQDKRLPKILSEHEVDRLLE 124 Query: 185 FWS---EGSQPRLA----FEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVE 236 +L E L +G+R S+ V + + + K V Sbjct: 125 AARGSGRNLHEKLRNTCLMELLYATGMRVSELVSLPVSATRGDPRLLLIMGKGNKERLVP 184 Query: 237 LPDGFMKLLAMTPIGKE--------------TFFINNDKQK--MNATQFSIWFKAKATKA 280 L L I ++ F + + +F + K A Sbjct: 185 LSPPARVALTDWLIARDQIDAAAQAKKQPASRFLFPSRGVAGYLTRHRFYLMIKEFAVAG 244 Query: 281 GVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 GV+ + H +R AT GA + G V E YT Sbjct: 245 GVDPSKVTPHTLRHAFATHLLANGADLRAIQTMLGHADVATTEIYTH 291 >gi|237718114|ref|ZP_04548595.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_2_4] gi|229452535|gb|EEO58326.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_2_4] Length = 390 Score = 118 bits (295), Expect = 1e-24, Method: Composition-based stats. Identities = 54/231 (23%), Positives = 87/231 (37%), Gaps = 16/231 (6%) Query: 111 YRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV---ERPKRK 167 R HI+ G E R + ++A ++L AVRQ + NP + ER + K Sbjct: 153 LRNFPNSHIKYG-EPRPISENTASRYLGMFSTALNNAVRQGIIRNNPMKELDARERIQPK 211 Query: 168 TEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL------QNNI 221 T E+++ + S + + AF F ++GLR SD R H+ + Sbjct: 212 DGKKEYLTIEELRTLMATDSYRPEVKEAFIFACFTGLRLSDMYRLAPMHIFKTADGKGEY 271 Query: 222 FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281 ++ QKT + + L + + L P G + F + T + A AG Sbjct: 272 IDMEMQKTEKPVIIPLSEEAKRWLP-KPRGNDIPFFDI---PTTQTVIGRALRKWAEAAG 327 Query: 282 VNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 + K S H R T+ GA G + E Y K D+ + Sbjct: 328 IEKHISFHSSRHTFGTMMLTLGADLFTTSKLMGHSNIQTTEIYAKIVDKKK 378 >gi|212715582|ref|ZP_03323710.1| hypothetical protein BIFCAT_00481 [Bifidobacterium catenulatum DSM 16992] gi|212660949|gb|EEB21524.1| hypothetical protein BIFCAT_00481 [Bifidobacterium catenulatum DSM 16992] Length = 317 Score = 118 bits (295), Expect = 1e-24, Method: Composition-based stats. Identities = 38/296 (12%), Positives = 95/296 (32%), Gaps = 42/296 (14%) Query: 71 LKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR------SGV 123 + +I ++ L+ + ++ + + + + IT+ + + + Sbjct: 4 FERMIRQFLAHIDVERGLSKATVSAYGADLKKYRQWLANRGINDITSVTTQDVENYVAFL 63 Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 + + S + L S+ ++AV + VA + V+ PK + +++ + Sbjct: 64 DESGESARSKARRLASIHAFHRFAVDEHSVADDVSAQVKAPKGASTLPDVLAIDEVARLL 123 Query: 184 SFWSEGS------------------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSI 224 + + EF+ +G R S++C A + + + Sbjct: 124 EAIPVSQNRACDDASLEVSDDPVMLRDKALLEFMYATGARVSEACGANLDDVDTESRIAR 183 Query: 225 KTQKTGTIITVELPDGFMKLLAM--------------TPIGKETFFINNDKQKMNATQFS 270 K V + + ++ P + F+N ++++ Sbjct: 184 LMGKGSKQRLVPVGSYACEAISRYVRSGRPILESKSKGPQERRALFLNKRGRRLSRQSVW 243 Query: 271 IWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 + +A ++K H +R AT GA + G +V + YT Sbjct: 244 EIIRVAGERAHIDKPLHPHTLRHSFATHLIQGGADVRTVQELLGHASVTTTQIYTH 299 >gi|15639382|ref|NP_218831.1| integrase/recombinase (codV) [Treponema pallidum subsp. pallidum str. Nichols] gi|189025624|ref|YP_001933396.1| integrase/recombinase [Treponema pallidum subsp. pallidum SS14] gi|3322669|gb|AAC65375.1| integrase/recombinase (codV) [Treponema pallidum subsp. pallidum str. Nichols] gi|189018199|gb|ACD70817.1| integrase/recombinase [Treponema pallidum subsp. pallidum SS14] gi|291059781|gb|ADD72516.1| tyrosine recombinase XerD [Treponema pallidum subsp. pallidum str. Chicago] Length = 306 Score = 118 bits (295), Expect = 1e-24, Method: Composition-based stats. Identities = 39/276 (14%), Positives = 85/276 (30%), Gaps = 27/276 (9%) Query: 77 EYRKSAHWGSLAVNSRISFESYFDQIIRKS-GDFDYRKITTKHIRSGVESRKH---TPSS 132 Y SA +L + ++ + + + +E R + + Sbjct: 13 AYLISAEAHAL--LTARTYVTTLMLFQKNLDPPCNIESANAHDCVRFIEKRSAAGVSGKT 70 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE---- 188 + + ++ +++ + ++ NP V+ P+R R + E + F Sbjct: 71 IAKDMAALHAFYQFLILEQVRPDNPMQDVDAPRRAYSLPRVLSPEQVNTFLQSIPLCTPG 130 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDG----FMK 243 G + R FE + +GLR S++ + + T K + M+ Sbjct: 131 GVRDRALFELIYAAGLRVSEAVSLSLSDIFFAERLLKVTGKGNKERMAPFGEQACYFLMQ 190 Query: 244 LLAMTPI------------GKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRK 291 + + K F+N +++ + ++GV H R Sbjct: 191 YIREARVRFTSAKHPENSEKKGAVFLNRQGGRLSRKGIWKRLQDIEIRSGVETHVHTFRH 250 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 AT G H + G + + YT + Sbjct: 251 SYATHLLAGGVDLHSVQCLLGHADIATTQVYTHVEN 286 >gi|291615720|ref|YP_003518462.1| XerC [Pantoea ananatis LMG 20103] gi|291150750|gb|ADD75334.1| XerC [Pantoea ananatis LMG 20103] Length = 301 Score = 118 bits (295), Expect = 1e-24, Method: Composition-based stats. Identities = 37/259 (14%), Positives = 82/259 (31%), Gaps = 19/259 (7%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRK---ITTKHIRSGVESRKHTPSSAIQF---LT 138 L+ + S+ ++ + + + +RS + +A L+ Sbjct: 20 RQLSPLTLSSYARQLAALVTIADEMKISAWSQLDPAMVRSMAARSRRAGLAASSLALRLS 79 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQPRLA 195 ++R W V ++ +A NP + P+ + +D+ Q + R Sbjct: 80 ALRSFLDWQVSRDMLAANPAKGIATPRNGRHLPKNIDVDDVNQLLEIDLTDPLAIRDRTM 139 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMKLLA-------M 247 E + GLR S+ +H+ K V + + + Sbjct: 140 LEVMYGGGLRLSELVNMDCRHVDLEAGEVWVLGKGSKERRVPIGRTAVSWIQQWLPLRTA 199 Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAH 305 G + F+++ +++A F K G+ + H +R AT ++ Sbjct: 200 FNPGDDALFLSSRGSRISARNVQKRFAEWGIKQGLSSHIHPHKLRHSFATHLLESSGDLR 259 Query: 306 ELMATYGWKTVDQAETYTK 324 + G + + YT Sbjct: 260 AVQELLGHANLSTTQIYTH 278 >gi|298529892|ref|ZP_07017294.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1] gi|298509266|gb|EFI33170.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1] Length = 386 Score = 118 bits (295), Expect = 1e-24, Method: Composition-based stats. Identities = 53/261 (20%), Positives = 100/261 (38%), Gaps = 21/261 (8%) Query: 100 DQIIRKSGDFDYRKITTKHIRSGVES---RKHTPSSAIQFLTSMRVLFKWAVRQEY--VA 154 + +I K G +I HI S + + P++A + + +R +F A++ + V Sbjct: 130 NHLIPKFGGMHMDQIKRDHIISLHQQCLLADYKPATANRLVVLLRYIFNLALKWDTAGVR 189 Query: 155 INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL--AFEFLLYSGLRCSDSCRA 212 NP V + + R K ++ + E P L LL +G R S+ +A Sbjct: 190 TNPTKEVTLAEENNQRDRYLDKNELDRLCKALKESENPLLEPIILMLLLTGARKSEVLKA 249 Query: 213 GVQHLQNNIFSI----KTQKTGTIITVELPDGFMKLLAMTP--IGKETFFINNDKQKMNA 266 + + KTG T+ L D +++L G F N Sbjct: 250 KWHNFDFERRTWQIPGTDTKTGKTRTIPLSDSALEVLDKIKYVDGCPYVFPN----PDTQ 305 Query: 267 TQFSIWFKAK---ATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 F+ F++ KAG+ + H +R ++ ++G + +E+ G + Y Sbjct: 306 KPFTAIFRSWDTARKKAGLGEVRIHDLRHSFSSFLINSGRSIYEVSELLGHTQIKTTMRY 365 Query: 323 TKGADRIRLGIKNSRRISSVV 343 A++ L NS +++V Sbjct: 366 AHLANQTLLDAVNSVPLNNVA 386 >gi|240127425|ref|ZP_04740086.1| putative site-specific recombinase [Neisseria gonorrhoeae SK-93-1035] gi|268685800|ref|ZP_06152662.1| tyrosine recombinase xerC [Neisseria gonorrhoeae SK-93-1035] gi|268626084|gb|EEZ58484.1| tyrosine recombinase xerC [Neisseria gonorrhoeae SK-93-1035] Length = 305 Score = 118 bits (295), Expect = 1e-24, Method: Composition-based stats. Identities = 34/278 (12%), Positives = 86/278 (30%), Gaps = 24/278 (8%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD-------YRKITTKHIRSGV 123 Y ++ + ++ ++ +++ + ++ + + + Sbjct: 6 FAAYFDAYLENIVREGKSEHTVAAYRRDLEELFALLAQMPSEDAGGVPQDLSRRDFTAAL 65 Query: 124 ESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 + + L++ R W V++ + +P ++ PK+ + +E + Sbjct: 66 RRLSQRGLDGRTLARKLSAWRQYCAWLVKRGLMRADPTADIKPPKQPERVPKALPQEWLN 125 Query: 181 QFKSF-----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIIT 234 + + FE + SGLR S+ + + + G Sbjct: 126 RMLDLPVDGGDPLAVRDYALFELMYGSGLRVSEIHGLNADDVYLDEAWVHVTGKGRKQRQ 185 Query: 235 VELP----DGFMKL--LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK--AGVNKSA 286 V L + L T + F + +++ Q ++ A + G + S Sbjct: 186 VPLTGKSVEALKNYLPLRQTASDGKALFTGRNGTRLSQRQIQKRLESWAAQYGDGRHVSP 245 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R A A + G ++ + YTK Sbjct: 246 HMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTK 283 >gi|183602476|ref|ZP_02963842.1| site-specific tyrosine recombinase XerC [Bifidobacterium animalis subsp. lactis HN019] gi|241191170|ref|YP_002968564.1| site-specific tyrosine recombinase XerC [Bifidobacterium animalis subsp. lactis Bl-04] gi|241196576|ref|YP_002970131.1| site-specific tyrosine recombinase XerC [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183218395|gb|EDT89040.1| site-specific tyrosine recombinase XerC [Bifidobacterium animalis subsp. lactis HN019] gi|240249562|gb|ACS46502.1| site-specific tyrosine recombinase XerC [Bifidobacterium animalis subsp. lactis Bl-04] gi|240251130|gb|ACS48069.1| site-specific tyrosine recombinase XerC [Bifidobacterium animalis subsp. lactis DSM 10140] gi|289177279|gb|ADC84525.1| Integrase/recombinase (XerD/RipX family) [Bifidobacterium animalis subsp. lactis BB-12] gi|295794163|gb|ADG33698.1| site-specific tyrosine recombinase XerC [Bifidobacterium animalis subsp. lactis V9] Length = 311 Score = 118 bits (295), Expect = 1e-24, Method: Composition-based stats. Identities = 47/298 (15%), Positives = 94/298 (31%), Gaps = 44/298 (14%) Query: 77 EYRKSAHWGSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133 EY +S L+ ++ +++ + + G + +T +R + HT Sbjct: 12 EYLRSNR--GLSEHTCMAYRGDILQCLEALDAFGRGNPDDVTLDDLRMWMGRMAHTVGKT 69 Query: 134 IQFLTSM--RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF--------- 182 ++ R F WA +A NP ++ PK ++ ++ Sbjct: 70 SLARKTIAVRSFFTWAYEHGMLAHNPAHALRTPKIDRNLPAVLNEDQAERLMDTVDAEAG 129 Query: 183 -----------KSFWSEGSQPRLAFEFLLYSGLRCSDSC--RAGVQHLQNNIFSIKTQKT 229 + ++ + E L +G+R + G N + + Sbjct: 130 EKNAGKSKDDALNAHAKALRDCAMLELLYATGMRVGELVGLDMGSFDWSNRTVRVLGKGN 189 Query: 230 GTIITVELPDGFMKLLAMTPIGKETF---------FINNDKQKMNATQFSIWFKAKATKA 280 T + + G+ F FI +++ +A +A Sbjct: 190 KTRVIPFGAPAQQAVEHWLHGGRPVFANGNSGNAVFIGVRGCRIDQRVVRQVVHEQAEQA 249 Query: 281 GV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-----DRIRLG 332 GV + S H +R +AT D GA E+ G ++ + Y + DR R Sbjct: 250 GVPDISPHALRHSAATHMLDGGADLREVQEMLGHSSLQTTQRYAHVSIEQLKDRYRQA 307 >gi|292486680|ref|YP_003529550.1| tyrosine recombinase xerC [Erwinia amylovora CFBP1430] gi|292897917|ref|YP_003537286.1| tyrosine recombinase [Erwinia amylovora ATCC 49946] gi|291197765|emb|CBJ44860.1| tyrosine recombinase [Erwinia amylovora ATCC 49946] gi|291552097|emb|CBA19134.1| Tyrosine recombinase xerC [Erwinia amylovora CFBP1430] Length = 302 Score = 118 bits (295), Expect = 1e-24, Method: Composition-based stats. Identities = 37/259 (14%), Positives = 84/259 (32%), Gaps = 19/259 (7%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITT------KHIRSGVESRKHTPSSAIQFLT 138 L+ +++++ II + + + + + P+S L+ Sbjct: 22 RQLSPLTQVNYRRQLSAIIVLLDELKVVEWARLDASLVRSLAARSTRSGLKPASLALRLS 81 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQPRLA 195 ++R W V Q + NP V P+ + +++ + + R Sbjct: 82 ALRSFLDWLVSQGAIKANPAKGVATPRAARHLPKNIDVDEVNRLLEIDLNDPLAVRDRAM 141 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT--------IITVELPDGFMKLLAM 247 E + +GLR S+ + HL + G+ V + ++ + + Sbjct: 142 LEAMYGAGLRLSELVGIDLGHLDLASGEVWVIGKGSKERRLPMGRTAVHWVENWLAMREL 201 Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAH 305 F++N ++++ F K GV + H +R AT ++ Sbjct: 202 FEPQDNALFLSNQGKRISTRNVQKRFAEWGVKQGVSSHIHPHKLRHSFATHMLESSGDLR 261 Query: 306 ELMATYGWKTVDQAETYTK 324 + G + + YT Sbjct: 262 AVQELLGHANLTTTQIYTH 280 >gi|160942095|ref|ZP_02089410.1| hypothetical protein CLOBOL_06983 [Clostridium bolteae ATCC BAA-613] gi|158434986|gb|EDP12753.1| hypothetical protein CLOBOL_06983 [Clostridium bolteae ATCC BAA-613] Length = 218 Score = 118 bits (295), Expect = 1e-24, Method: Composition-based stats. Identities = 31/202 (15%), Positives = 64/202 (31%), Gaps = 16/202 (7%) Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLA 195 M+ F + ++ + +P ++ PK + + + ++ + + + Sbjct: 1 MKAFFNFMFKEGRIRKDPAELLKAPKIEKKAPVILSVNEVNALLDQPGMTTSKEIRDKAM 60 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET- 254 E L +G+R S+ + L + I + V + L++ + Sbjct: 61 LELLYATGIRVSELIGLELSDLNMQVGYITCRDGQKERMVPFGKPAKQALSVYLEKGRSQ 120 Query: 255 ---------FFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGAT 303 F N + M+ F K KAG+ + + H +R A GA Sbjct: 121 LLKGKESQWLFTNCSGKAMSRQGFWKIIKYYGEKAGIQADITPHTLRHSFAAHLIRGGAD 180 Query: 304 AHELMATYGWKTVDQAETYTKG 325 H + A G Y Sbjct: 181 IHAVQAMLGHSDSTTTHMYAAY 202 >gi|229824242|ref|ZP_04450311.1| hypothetical protein GCWU000282_01546 [Catonella morbi ATCC 51271] gi|229786596|gb|EEP22710.1| hypothetical protein GCWU000282_01546 [Catonella morbi ATCC 51271] Length = 331 Score = 118 bits (295), Expect = 1e-24, Method: Composition-based stats. Identities = 46/270 (17%), Positives = 102/270 (37%), Gaps = 24/270 (8%) Query: 85 GSLAVNSRISFE---SYFDQIIRKSGDFDYRKITTKHIR---SGVESRKHTPSSAIQFLT 138 + + +++ + F I SG D ++I + +R + + + + +S + L+ Sbjct: 45 RRYSQKTLAAYQQDLAAFQSFIETSGGGDLKQIAYQDVRLYLAYLNEQAYAKTSIRRKLS 104 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ-----FKSFWSEGSQPR 193 S+R F + + Q ++ NP V+ +K + + ++++ Q +K + R Sbjct: 105 SLRSFFTYCLSQGWIETNPMELVQYQVKKKTLPQFFYEQELTQLFDSLYKREDDAAWRDR 164 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLA------ 246 + E L +G+R S+ ++ L + I+ K V L D + + Sbjct: 165 MLLEVLYATGMRVSELSELSLERLNLEVQLIRVLGKGNKERIVPLGDSATQAIRDYLSHL 224 Query: 247 ---MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAG 301 + + + M+ Q K+ + +N H +R AT + G Sbjct: 225 RPKIDRNNSPYLLLTDKGAPMSPRQIRTRLKSLVEEQAMNLKIYPHKLRHSFATHLLNKG 284 Query: 302 ATAHELMATYGWKTVDQAETYTK-GADRIR 330 A + G + + YT D++R Sbjct: 285 ADLRTVQELLGHANLSSTQIYTHVTKDQLR 314 >gi|254368999|ref|ZP_04985012.1| integrase/recombinase XerC [Francisella tularensis subsp. holarctica FSC022] gi|157121920|gb|EDO66090.1| integrase/recombinase XerC [Francisella tularensis subsp. holarctica FSC022] Length = 292 Score = 118 bits (295), Expect = 1e-24, Method: Composition-based stats. Identities = 38/264 (14%), Positives = 93/264 (35%), Gaps = 18/264 (6%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI---RSGVESRKHTPSSAIQFLTSMR 141 + + + +++ Q+ + D + +T I + ++ ++P + + L+S+R Sbjct: 18 KNYSQETINNYQRDLLQLNQALSDKNIISLTHSDILIWIKRLHAQGNSPKTLQRKLSSVR 77 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG---SQPRLAFEF 198 F + + E V+ NP ++ PK + +++ ++ F+ Sbjct: 78 SFFNFLINSEIVSQNPANGIKAPKDSKRLPKVVNTDELAYLLDINPSNDIEARDIACFDL 137 Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------ELPDGFMKLLAMTP 249 L G+R S+ ++ + + +I+ G + L K+ Sbjct: 138 LYSCGIRLSELSSVELKDISISQKNIRVTGKGNKQRIVYFGTKTLSNLNRWL-KIRDSLK 196 Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATK-AGVNKSAHGVRKFSATISADAGATAHELM 308 + FI+ D + + + A K A + H +R A+ D+ + Sbjct: 197 PSSDYLFISRDGKHLTNRSIQKRLEIFAQKYASRHIHPHMLRHSFASHVLDSSKDLLAVK 256 Query: 309 ATYGWKTVDQAETYTKGADRIRLG 332 G + + YT + +L Sbjct: 257 DLLGHADISSTQIYTH-LNFQQLA 279 >gi|78224235|ref|YP_385982.1| tyrosine recombinase XerD subunit [Geobacter metallireducens GS-15] gi|78195490|gb|ABB33257.1| tyrosine recombinase XerD subunit [Geobacter metallireducens GS-15] Length = 294 Score = 118 bits (295), Expect = 1e-24, Method: Composition-based stats. Identities = 47/266 (17%), Positives = 88/266 (33%), Gaps = 23/266 (8%) Query: 85 GSLAVNSRISFESYFDQIIR--------KSGDFDYRKITTKHIRSGVESRKHTPSSAIQF 136 +++ ++ ++ S Q + + + + + R HT SS + Sbjct: 16 RNVSPHTLAAYRSDLAQFREFVRQETGAAAEPEGVSHLLIRRWLALLH-RDHTKSSVGRK 74 Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QP 192 L ++R FK +R + NP V PK++ + + ++ E + Sbjct: 75 LAAVRAFFKHLIRTGRLVKNPAELVSTPKKEKKVPYHLSIDEATALVETPKEPDILSLRD 134 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLL------ 245 R E L G+R S+ + + + + + K G V + L Sbjct: 135 RAILETLYSCGVRVSELTGLNIGGIDLDDGTARVLGKGGKERIVPVGSIARAALSHYLTA 194 Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWF-KAKATKAGVNK-SAHGVRKFSATISADAGAT 303 P F N ++ K A + K S H +R AT + GA Sbjct: 195 RNHPPLDAPLFTNARGGRLTPRSVRRVVDKHILRIAAMRKISPHTLRHTFATHLLEGGAD 254 Query: 304 AHELMATYGWKTVDQAETYTK-GADR 328 + G ++ + YT G DR Sbjct: 255 LRAIQELLGHASLSTTQKYTHVGIDR 280 >gi|325143762|gb|EGC66079.1| tyrosine recombinase XerC [Neisseria meningitidis M01-240013] Length = 305 Score = 118 bits (295), Expect = 1e-24, Method: Composition-based stats. Identities = 36/278 (12%), Positives = 84/278 (30%), Gaps = 24/278 (8%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD-------YRKITTKHIRSGV 123 Y ++ + ++ ++ +++ + ++ + + + Sbjct: 6 FAAHFDAYLENIVREGKSEHTVAAYRRDLEELFALLAQMPSEAEGGVPQGLSQRDFTAAL 65 Query: 124 ES---RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 R + + L+S R W V + + +P ++ PK+ + +E + Sbjct: 66 RRLSQRGLNARTLARKLSSWRQYCVWLVERGLMRADPTADIKPPKQPERVPKALPQEWLN 125 Query: 181 QFKSF-----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIIT 234 + + FE + SGLR S+ + + + G Sbjct: 126 RMLDLPVDGGDPLAVRDHALFELMYGSGLRVSEIHGLNADDVYLDEAWVHVTGKGRKQRQ 185 Query: 235 VELP----DGFMKL--LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK--AGVNKSA 286 V L + L T + F + +++ Q A + G + S Sbjct: 186 VPLTGKSVEALKNYLPLRQTASDGKALFTGRNGTRLSQRQIQKRLAQWAAQNGDGRHVSP 245 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R A A + G ++ + YTK Sbjct: 246 HMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTK 283 >gi|293400524|ref|ZP_06644669.1| integrase/recombinase XerC [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291305550|gb|EFE46794.1| integrase/recombinase XerC [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 305 Score = 118 bits (295), Expect = 1e-24, Method: Composition-based stats. Identities = 44/279 (15%), Positives = 97/279 (34%), Gaps = 31/279 (11%) Query: 88 AVNSRISFESYFDQIIRKSGDFDYRKITTKHIR---------SGVESRKHTPSSA--IQF 136 + +++ +++ + + + + + R+ T +A + Sbjct: 19 SAHTKDAYQRDITEFLDFLKSENIMSLDDVDRIIVMNYVSHLRERDGRQGTMKNATVARK 78 Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QP 192 L+S+R +++ V NP L + PK+ +++ F + + + Sbjct: 79 LSSLRSYYRYLNEYVGVQNNPFLYFKAPKQTRRIPEFLFYDEIALFLASFDLHEAVDVRD 138 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLA---- 246 R FE + SGLR S++ + + +NI I K V D + L Sbjct: 139 RALFELMYASGLRVSEAVNLRLSDIDFHDNILHII-GKGDKQRLVPFYDLAKERLVDYIE 197 Query: 247 ------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISA 298 + + E F+N + + + + A K ++ H R AT Sbjct: 198 HVRPKWVNTLQHEYVFVNQKGKPLTSRGVQYRMELAAKKCHLHLHIHPHMFRHSFATHLL 257 Query: 299 DAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNS 336 D GA + G ++ + Y DR++ +++ Sbjct: 258 DNGADLRVVQELLGHASLSTTQIYVHVTQDRLKSAYEHA 296 >gi|118498082|ref|YP_899132.1| site-specific recombinase [Francisella tularensis subsp. novicida U112] gi|194323307|ref|ZP_03057091.1| phage integrase family protein [Francisella tularensis subsp. novicida FTE] gi|254373434|ref|ZP_04988922.1| integrase/recombinase XerC [Francisella tularensis subsp. novicida GA99-3549] gi|254374894|ref|ZP_04990375.1| hypothetical protein FTDG_01073 [Francisella novicida GA99-3548] gi|118423988|gb|ABK90378.1| site-specific recombinase [Francisella novicida U112] gi|151571160|gb|EDN36814.1| integrase/recombinase XerC [Francisella novicida GA99-3549] gi|151572613|gb|EDN38267.1| hypothetical protein FTDG_01073 [Francisella novicida GA99-3548] gi|194322671|gb|EDX20151.1| phage integrase family protein [Francisella tularensis subsp. novicida FTE] Length = 292 Score = 118 bits (295), Expect = 1e-24, Method: Composition-based stats. Identities = 38/264 (14%), Positives = 93/264 (35%), Gaps = 18/264 (6%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI---RSGVESRKHTPSSAIQFLTSMR 141 + + + +++ Q+ + D + +T I + ++ ++P + + L+S+R Sbjct: 18 KNYSQETINNYQRDLLQLNQALSDKNIISLTHSDILIWIKKLHAQGNSPKTLQRKLSSVR 77 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG---SQPRLAFEF 198 F + + E V+ NP ++ PK + +++ ++ F+ Sbjct: 78 SFFNFLINSEIVSQNPANGIKAPKDSKRLPKVVNTDELAYLLDVNPSNDIEARDIACFDL 137 Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------ELPDGFMKLLAMTP 249 L G+R S+ ++ + + +I+ G + L K+ Sbjct: 138 LYSCGIRLSELSSVELKDISISQKNIRVTGKGNKQRIVYFGTKTLSNLNRWL-KIRDSLK 196 Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATK-AGVNKSAHGVRKFSATISADAGATAHELM 308 + FI+ D + + + A K A + H +R A+ D+ + Sbjct: 197 PSSDYLFISRDGKHLTNRSIQKRLEIFAQKYASRHIHPHMLRHSFASHVLDSSKDLLAVK 256 Query: 309 ATYGWKTVDQAETYTKGADRIRLG 332 G + + YT + +L Sbjct: 257 DLLGHADISSTQIYTH-LNFQQLA 279 >gi|300113125|ref|YP_003759700.1| tyrosine recombinase XerC [Nitrosococcus watsonii C-113] gi|299539062|gb|ADJ27379.1| tyrosine recombinase XerC [Nitrosococcus watsonii C-113] Length = 300 Score = 118 bits (295), Expect = 1e-24, Method: Composition-based stats. Identities = 37/272 (13%), Positives = 90/272 (33%), Gaps = 21/272 (7%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYF---DQIIRKSGDFDYRKITTKHIRSGVESRKHT 129 I ++ + L+ + +S+ ++G +++ + + +R+ V + T Sbjct: 8 WIQKFLLHLQYERGLSPQTVVSYRRDLAKVMAFCGRNGIGNWQALDAQKVRALVAAYHQT 67 Query: 130 P---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 S + L+++R + + R+ V NP + P+ K + Q + Sbjct: 68 GLSGRSIQRLLSALRSFYVYLQRENIVDHNPAQGISAPRGKRALPPTLDVDQAAQLLNTK 127 Query: 187 SEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT-VELPDGFM 242 G + + E SGLR ++ + L + ++ G V L Sbjct: 128 PCGDLLLRDQAILELFYSSGLRLAELVGLNLSALDLDTALVRVVGKGAKTREVPLGRRAK 187 Query: 243 KLLAMTPI--------GKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKF 292 L +E F+ ++++ + + G + + H +R Sbjct: 188 AALLAWLPIRAGWISQSQEAVFVTRRGRRLSPRAVQKRLRLWGLRQGFDVAIHPHRLRHA 247 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTK 324 A+ ++ + G + + YT Sbjct: 248 FASHLLESSGDLRAVQELLGHADISTTQIYTH 279 >gi|289628758|ref|ZP_06461712.1| phage integrase family site specific recombinase [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|330870488|gb|EGH05197.1| phage integrase family site specific recombinase [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 320 Score = 118 bits (295), Expect = 1e-24, Method: Composition-based stats. Identities = 54/277 (19%), Positives = 106/277 (38%), Gaps = 32/277 (11%) Query: 84 WGSLA-VNSRISFESYFDQIIRKSGDF---DYRKITTKHI---RSGVESRKHTPSSAIQF 136 + +L +R ++++ G D+R++T H+ R+ +E R ++ + Sbjct: 33 FANLDNPRTRRAYQNDLTDFSAFIGLASADDFRQVTRSHVLAWRANLEQRGLAGATIRRK 92 Query: 137 LTSMRVLFKWAVRQE-YVAINPCLSVERPKRKT-EGIRPWTKED-----MQQFKSFWSEG 189 L ++ LF + NP V+RPK ++ EG P + ++ +G Sbjct: 93 LAALASLFDHLLESNAIAGGNPVHGVKRPKIESNEGKTPALGDHQAKALLEAPDESTLKG 152 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKT-QKTGTIITVELPDG------ 240 + R LLY GLR ++ + V + + I +K K G + + L Sbjct: 153 LRDRAMLAVLLYHGLRREEAAQLQVSDIQERRGIQHLKIHGKGGKVRYLPLHPVAAGRIH 212 Query: 241 --FMKLLAMTPIGKETFFINNDKQK----MNATQFSIWFKAKATKAGV---NKSAHGVRK 291 + K FI+ + ++A +A KAG+ HG+R Sbjct: 213 WYLERSGHHLGDKKVPLFISLRGKSTGASISANGIYTVVEAYTKKAGIEVAGLGVHGLRA 272 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 +AT + + A ++ A G + + Y + +R Sbjct: 273 TAATNALEHEADIAKVQAWLGHANISTTKIYDRRENR 309 >gi|300714802|ref|YP_003739605.1| Tyrosine recombinase XerC [Erwinia billingiae Eb661] gi|299060638|emb|CAX57745.1| Tyrosine recombinase XerC [Erwinia billingiae Eb661] Length = 302 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 36/259 (13%), Positives = 80/259 (30%), Gaps = 19/259 (7%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITT------KHIRSGVESRKHTPSSAIQFLT 138 L+ ++I+++ + + + + + P+S L+ Sbjct: 22 RQLSPLTQINYQRQLAACLALLTEMKLTAWDKLDAAQVRSLAARSRRGGLKPASLALRLS 81 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQPRLA 195 ++R W + Q + NP V P+ + +++ Q + R Sbjct: 82 ALRSFLDWQISQGVLKANPAKGVATPRAPRHLPKNIDVDEVSQLLDIDLNDPLAVRDRAM 141 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMKLLAMT------ 248 E + +GLR S+ HL K + + ++ + Sbjct: 142 LEIMYGAGLRLSELVGIDTGHLDLASGEVWVVGKGSKERRLPIGRTAVQWMEHWLEMREL 201 Query: 249 -PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAH 305 + F++ ++M+A F K GV + H +R AT ++ Sbjct: 202 FAPEDQAVFLSKYGKRMSARNVQKRFAEWGAKQGVSSHIHPHKLRHSFATHMLESSGDLR 261 Query: 306 ELMATYGWKTVDQAETYTK 324 + G + + YT Sbjct: 262 AVQELLGHANLSTTQIYTH 280 >gi|225351391|ref|ZP_03742414.1| hypothetical protein BIFPSEUDO_02985 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225157735|gb|EEG71018.1| hypothetical protein BIFPSEUDO_02985 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 317 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 39/292 (13%), Positives = 92/292 (31%), Gaps = 42/292 (14%) Query: 75 ISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS------GVESRK 127 I ++ L+ + ++ + + + D I + ++ Sbjct: 8 IRQFLAHIDVERGLSKATVSAYGADLKKYRQWLADQGVGGIAAVTTQDVERYIVFLDESG 67 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + S + L S+ L ++AV + V + V+ PK + T +++ + Sbjct: 68 ESSRSKARRLASIHALHRFAVNEHIVVDDVSAQVKAPKGVSTLPDVLTVDEVARLLDSIP 127 Query: 188 EGS------------------QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQK 228 + + EF+ G R S++C A + + + + K Sbjct: 128 VSQNREHDGVVSEFPDDPVMLRDKALLEFMYAIGARVSEACGANLDDVDVDGRIARLMGK 187 Query: 229 TGTIITVELPDGFMKLL--------------AMTPIGKETFFINNDKQKMNATQFSIWFK 274 V + + + + P+ + F+N ++++ + Sbjct: 188 GSKQRLVPVGSYACEAIIRYLHAGRPKLESKSKGPVERRALFLNKRGKRLSRQSVWEIIR 247 Query: 275 AKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 +A ++K H +R AT GA + G +V + YT Sbjct: 248 GAGERAHIDKPLHPHTLRHSFATHLIQGGADVRTVQELLGHASVTTTQIYTH 299 >gi|262190134|ref|ZP_06048420.1| tyrosine recombinase XerC [Vibrio cholerae CT 5369-93] gi|262033988|gb|EEY52442.1| tyrosine recombinase XerC [Vibrio cholerae CT 5369-93] Length = 311 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 38/278 (13%), Positives = 94/278 (33%), Gaps = 21/278 (7%) Query: 68 PTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIR---KSGDFDYRKITTKHIRSGV 123 P L + + H L++ ++ +++ + + + + G ++ ++ +R V Sbjct: 10 PDALAQPLERFYAYLHTEKGLSLYTQRNYKQQLETMTQYLVQVGLSNWSQLDAAWVRQLV 69 Query: 124 ESRKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 K SS L+S+R + + + + NP V P+++ + ++M Sbjct: 70 MQGKRQGMKASSIATRLSSLRSFLDFLILRGELEANPAKGVSAPRKQRTLPKNLDVDEMA 129 Query: 181 QFKSFW---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI---IT 234 Q + R E + +GLR ++ V+ + + I+ G + Sbjct: 130 QLLEVTDDDPLSIRDRAIMELMYGAGLRLAELVSIDVKDVNLSEGEIRVIGKGNKERKVW 189 Query: 235 V------ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSA 286 + + + F++ +++ K V + S Sbjct: 190 FAGQAQEWVGKWLKLRSQLADSAETALFVSKLGTRISHRSVQKRMAEWGQKQAVASHISP 249 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R AT ++ + G + + + YT Sbjct: 250 HKLRHSFATHMLESSNNLRAVQELLGHENIATTQIYTH 287 >gi|170724856|ref|YP_001758882.1| tyrosine recombinase XerC [Shewanella woodyi ATCC 51908] gi|169810203|gb|ACA84787.1| tyrosine recombinase XerC [Shewanella woodyi ATCC 51908] Length = 299 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 39/271 (14%), Positives = 92/271 (33%), Gaps = 19/271 (7%) Query: 79 RKSAHWGSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGVESRKHTPSSAI 134 SA L+ ++ ++ +++ + D + + S + R +P S Sbjct: 12 YLSAE-RQLSKHTVRNYLFELNRVDQLLDDSTSWLSVSREQIQSAMSQLHRRGLSPRSLS 70 Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR---PWTKEDMQQFKSFWSEGSQ 191 L++++ ++ +R+ + NP +++ PK+ + P + + + + Sbjct: 71 LTLSAVKQFCEFLLREGVIQTNPAINLSAPKQNKPLPKNMDPDSVSHLLEIDGDDPLSLR 130 Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELP-------DGFMK 243 + E SGLR ++ + +Q + K G + + D ++ Sbjct: 131 DKAIMELFYSSGLRLAELAALNISDIQFSERLVKVLGKGGKERILPIGKMAISAIDKWLA 190 Query: 244 LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAG 301 + P + FI N ++ + +N H +R AT ++ Sbjct: 191 CRRLIPCEHDALFITNKGTRLAHRSIQARLSKWGQEQALNMRVHPHKLRHSFATHMLESS 250 Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLG 332 A + G + + YT D L Sbjct: 251 ADLRAVQELLGHANLSTTQIYT-SLDFQHLA 280 >gi|300854312|ref|YP_003779296.1| putative integrase/recombinase XerD [Clostridium ljungdahlii DSM 13528] gi|300434427|gb|ADK14194.1| predicted integrase/recombinase XerD [Clostridium ljungdahlii DSM 13528] Length = 292 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 39/282 (13%), Positives = 102/282 (36%), Gaps = 20/282 (7%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF-----DYRKITTKHIRSGVESR 126 L+ Y ++ ++ N+ ++ + D + ++ ++ Sbjct: 2 DGLLLGYEETLEKKHMSKNTMDAYVRDITRFYNFIKDREENLENVEVVSIMAYVQYLQKE 61 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF- 185 SS ++ + S+R +K+ + + + NP L + PK + + + T E++ + Sbjct: 62 GRAISSIVRNIVSLRNFYKYLMLKGVLNENPVLYYQIPKVEHKVPKILTIEEVDKLLEAP 121 Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK-TGTIITVELPDGF 241 ++G + + E + +G++ + + + + ++ + V + Sbjct: 122 NLDTNKGIRDKAMLEVMYAAGMKVMELLSLTIYDIDLKLSYVRCRSLKEEERIVPIGSVA 181 Query: 242 MKLLAMTPIGK--------ETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRK 291 +K L + + F+N +M+ F K A +A ++K+ A +R Sbjct: 182 VKYLKNYLNIRHKLNIYNLDVLFLNLRGVQMSRQGFWKIVKYYAKEANIDKNINAFTLRH 241 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 A GA + G K + + Y+ R ++ Sbjct: 242 SFAVHLLQNGADIKSVQELLGHKELSATQIYSSVIKRNKIAQ 283 >gi|296164601|ref|ZP_06847168.1| integrase/recombinase XerD [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295900020|gb|EFG79459.1| integrase/recombinase XerD [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 313 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 44/274 (16%), Positives = 85/274 (31%), Gaps = 35/274 (12%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH----IRSGVESRKHTPSS-------- 132 +A N+ S+ + + D + V R+ P + Sbjct: 21 RGVAANTLSSYRRDLRRYTKHLSDRGIHDLAKVGEDDVSEFLVALRRGDPDAGTAALSAV 80 Query: 133 -AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----- 186 A + L ++R L ++A + ++ +V P + T + + Sbjct: 81 SAARALIAVRGLHRFAAAEGLAELDVARAVRPPTPGRRLPKSLTIDQVLALLEGAGGDSA 140 Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFM 242 + R E L +G R S++ V + + K G V + + Sbjct: 141 SDGPLTLRNRALLELLYSTGARISEAVGLDVDDVDSRARSVLLRGKGGKQRLVPVGRPAV 200 Query: 243 KLL-----------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGV 289 + L A G F+N +++ + A +AG+ S H + Sbjct: 201 QALDAYLVRGRPDLARRGRGTPAIFLNVRGGRLSRQSAWQVLQDAAERAGISSGVSPHML 260 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYT 323 R AT + GA + G +V + YT Sbjct: 261 RHSFATHLLEGGADVRVVQELLGHASVTTTQIYT 294 >gi|315500433|ref|YP_004089236.1| integrase family protein [Asticcacaulis excentricus CB 48] gi|315418445|gb|ADU15085.1| integrase family protein [Asticcacaulis excentricus CB 48] Length = 304 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 41/290 (14%), Positives = 96/290 (33%), Gaps = 35/290 (12%) Query: 85 GSLAVNSRISFESYFDQII-----RKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139 + + +R ++ + G + + +++R S+ + + Sbjct: 17 RNASPRTREAYGHDLLDLRNHAGIDADGLLTLNEGDIAGFFAALDARGLASSTLQRKRAA 76 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-----GSQPRL 194 +R +++ VR+ +P + K+ + +++++ + ++ + Sbjct: 77 VRQFYRFCVREGLSDNDPSRKIAAAKKGRPLPKILSRQEVDALIAAADAKDAHQATRLQC 136 Query: 195 AFEFLLYSGLRCSDSCRAGVQHL-QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKE 253 E SG+R S+ + + ++ + I K GT V L + + Sbjct: 137 LIEIAYASGMRVSEIVALRLDAVQKDPAYLIVKGKGGTERLVPLNPSARAAIKDYLDIRP 196 Query: 254 TFFINNDK------------QKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISA 298 F DK + + A +AG++ S H +R AT Sbjct: 197 LFLNAKDKANPYLFCSRGAEGHLTRRRVGQLLDEAALEAGIDPARVSPHVLRHAFATHLL 256 Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348 + GA + G + + YT A + R+ VV++ P Sbjct: 257 EGGADLRVVQTLLGHADISTTQVYTHVA---------TERLKEVVETHHP 297 >gi|77163851|ref|YP_342376.1| site-specific tyrosine recombinase XerC [Nitrosococcus oceani ATCC 19707] gi|254435837|ref|ZP_05049344.1| tyrosine recombinase XerC [Nitrosococcus oceani AFC27] gi|76882165|gb|ABA56846.1| tyrosine recombinase XerC subunit [Nitrosococcus oceani ATCC 19707] gi|207088948|gb|EDZ66220.1| tyrosine recombinase XerC [Nitrosococcus oceani AFC27] Length = 300 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 39/272 (14%), Positives = 92/272 (33%), Gaps = 21/272 (7%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQ---IIRKSGDFDYRKITTKHIRS---GVESR 126 I ++ + L+ + +S+ + ++G +++++ + +R+ Sbjct: 8 WIQKFFTHLQYERGLSPQTVVSYRRDLAKAIAFCGRNGIGNWQELDAQRVRALVVAHHQA 67 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + S + L+++R + + R+ V NP + PK K + Q + Sbjct: 68 GLSGRSIQRLLSALRSFYVYLQRENIVDHNPAQGISAPKGKRALPPSLDVDQTAQLLNTQ 127 Query: 187 S---EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT-VELPDGFM 242 + + E SGLR ++ + L + ++ G V L Sbjct: 128 PCSDLLLRDQAILELFYSSGLRLAELVGLNLSALDLDTALVRVVGKGAKTREVPLGRRAK 187 Query: 243 -KLLAMTPIGK-------ETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKF 292 LLA P+ E FI ++++ + + G + + H +R Sbjct: 188 VALLAWLPVRAGWINQSQEAVFITRHGRRLSPRAVQKRLRLWGLRQGFDVAIHPHRLRHA 247 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTK 324 A+ ++ + G + + YT Sbjct: 248 FASHLLESSGDLRAVQELLGHADISTTQIYTH 279 >gi|148284918|ref|YP_001249008.1| phage-related integrase [Orientia tsutsugamushi str. Boryong] gi|148284938|ref|YP_001249028.1| phage-related integrase [Orientia tsutsugamushi str. Boryong] gi|148285074|ref|YP_001249164.1| phage-related integrase [Orientia tsutsugamushi str. Boryong] gi|146740357|emb|CAM80790.1| phage-related integrase [Orientia tsutsugamushi str. Boryong] gi|146740377|emb|CAM80821.1| phage-related integrase [Orientia tsutsugamushi str. Boryong] gi|146740513|emb|CAM81084.1| phage-related integrase [Orientia tsutsugamushi str. Boryong] Length = 414 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 51/287 (17%), Positives = 98/287 (34%), Gaps = 28/287 (9%) Query: 54 STPKREYINSPRKKPTTLKWLISEYRKSAH------WGSLAVN----SRISFESYFDQII 103 R + T K L +Y + W A ++ +E +I Sbjct: 108 ENENRIKERERKANDITFKELCYKYIEEYAKIYTINWKENADRVHTYAQALYEKKISKIR 167 Query: 104 RKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER 163 + + I+ + + +A L ++R +F A++ + NP L +E+ Sbjct: 168 MSDIEPIFNDISKEGKYA----------TANALLATLRTIFNKAIKWGLIENNPTLGIEQ 217 Query: 164 PKRKTEGIRPWTKEDMQQFKSFWSEGSQP--RLAFEFLLYSGLRCSDSCRAGVQHLQ--N 219 K + R + ++M +F + P R LY+G R S+ ++ Sbjct: 218 HKLQARERR-LSYDEMGRFLQVLCGEASPLIRDFALLALYTGARKSNVLEMEWDNIDFER 276 Query: 220 NIFSIKTQKTGTIITVELPDGFMKLLAMTP-IGKETFFINNDKQKMNATQFSI-WFKAKA 277 I+ I K G + L D M++L I + + + + +K Sbjct: 277 KIWHIPKTKNGKAQNIPLTDEAMEILQARKLISTSKWVLPSSTSESGHLSHPNTAWKIIC 336 Query: 278 TKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 KA + N H +R+ A+ DAG + + + YT Sbjct: 337 EKASIKNFRIHDLRRTFASCMWDAGESQRTISIALNHINPNSTIPYT 383 >gi|57234341|ref|YP_181631.1| phage integrase family site specific recombinase [Dehalococcoides ethenogenes 195] gi|57234884|ref|YP_181043.1| phage integrase family site specific recombinase [Dehalococcoides ethenogenes 195] gi|57234923|ref|YP_181020.1| phage integrase family site specific recombinase [Dehalococcoides ethenogenes 195] gi|57224789|gb|AAW39846.1| site-specific recombinase, phage integrase family [Dehalococcoides ethenogenes 195] gi|57225332|gb|AAW40389.1| site-specific recombinase, phage integrase family [Dehalococcoides ethenogenes 195] gi|57225371|gb|AAW40428.1| site-specific recombinase, phage integrase family [Dehalococcoides ethenogenes 195] Length = 319 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 50/312 (16%), Positives = 111/312 (35%), Gaps = 30/312 (9%) Query: 58 REYINSPRKKPTTLKWL------------ISEYRKSAHWGSLAVNSRISFESYFDQIIR- 104 ++ + +P+ T++ L + + + L+ + + QII Sbjct: 2 KDTLIAPQAHDRTIRKLDTLIVSTGLRRHLEAFLLACRVEDLSRRTIFDYRQKIGQIIDY 61 Query: 105 --KSGDFDYRKITTKHIRSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160 G D +++T HIR + +++ T P S + S++V F W R+ ++ +P Sbjct: 62 MVALGLTDPKEVTASHIRGFLLTKQETCQPVSVHGYYRSIKVFFNWLTREGVISFSPMAP 121 Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQH 216 + PK + IRP+ ++++ + R L+ +G+R + + Sbjct: 122 IRPPKVPKKIIRPYYPDELRSLLLACEGRGILSLRDRAIMLVLIDNGIRLGELANINISD 181 Query: 217 LQNNIFSIKTQKTGTIITV-----ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI 271 + + +I G V K L + ++ D + + + Sbjct: 182 IDVDRETISVWGKGRKQRVVGISKRTQMAVYKYLHARVDNNPSLWVTTDSKTLTPKGIYL 241 Query: 272 WFKAKATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 +AG+ S H R +AT+S G ++ + G T+ Y + Sbjct: 242 AIHRLGERAGLKDVRNSPHTFRHTAATLSIKNGGDLFQVQSMLGHTTLAMTRRYAASL-Q 300 Query: 329 IRLGIKNSRRIS 340 + ++ S Sbjct: 301 SEAAAEAHKKFS 312 >gi|237785754|ref|YP_002906459.1| integrase/recombinase [Corynebacterium kroppenstedtii DSM 44385] gi|237758666|gb|ACR17916.1| integrase/recombinase [Corynebacterium kroppenstedtii DSM 44385] Length = 327 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 53/310 (17%), Positives = 105/310 (33%), Gaps = 33/310 (10%) Query: 52 TGSTPKREYINSPRKKPTTLKW--LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD 108 TGS+ R + S ++ + +W +I +Y + + N+ ++ + ++ G Sbjct: 10 TGSSKDRNDVASDKEPAVSAQWDGIIEDYLDFLTFTKGRSENTVKAYRNDLHSLVD--GL 67 Query: 109 FDYRKITTKHIRSGVE---SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK 165 ++T HIR H SS + +++R +W + V +P + P+ Sbjct: 68 TTVDQLTLHHIRRWQADALRAGHARSSLSRRASAVRNFGRWLEHRGIVQSDPASRLSSPR 127 Query: 166 RKTEGIRPWTKEDMQQFKSFWSEGS--------QPRLAFEFLLYSGLRCSDSCRAGVQHL 217 R + + G+ + EF+ +G+R S+ CR + L Sbjct: 128 PDKTLPRVLAADQTAEILHNLEVGAEEEDPIALRDLAMVEFMYGTGVRVSELCRLNIGDL 187 Query: 218 QNNIFSIK-TQKTGTIITVELPDGFMKLLAMT--------------PIGKETFFINNDKQ 262 ++ K V + L E F+ Sbjct: 188 DFARQTVTILGKGNKQRVVPFGESAAHALKRWIDIGRPAIAANGHHKDADEAVFLGKRGG 247 Query: 263 KMNATQFSIWFKAKA-TKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321 +++ Q T +G + S H +R +AT + GA + G ++ + Sbjct: 248 RIDPRQVRTVVHQATSTVSGGDVSPHALRHSAATDVLEGGADLRVVQEMLGHASLATTQI 307 Query: 322 YTKGADRIRL 331 YT D RL Sbjct: 308 YTH-VDSERL 316 >gi|301155134|emb|CBW14598.1| site-specific tyrosine recombinase [Haemophilus parainfluenzae T3T1] Length = 295 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 40/271 (14%), Positives = 93/271 (34%), Gaps = 20/271 (7%) Query: 74 LISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITT------KHIRSGVESR 126 L+++Y ++ ++ +++ D I+ + + + I + + Sbjct: 4 LLNQYWDYLRIERQVSPHTLTNYQHQLDAILAILAEKGIQHWQQVNPSVVRLILAESRKQ 63 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS-- 184 S L+++R F + V+Q + +NP + PK+ + E +Q+ S Sbjct: 64 GLKEKSLALRLSALRQFFSYLVQQGQMKVNPATGISAPKQGKHLPKNIDAEQVQKLLSND 123 Query: 185 -FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPD--- 239 + R E + SGLR S+ + + + ++ K V Sbjct: 124 SKDPIDLRDRAMMELMYSSGLRLSELQGLNLNSINTRVREVRVIGKGNKERIVPFGRYAS 183 Query: 240 -GFMKLLAMTP---IGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFS 293 + L + P + F++ ++ + + G+N + H +R Sbjct: 184 HAIQQWLKVRPLFNPKDDALFVSQQGNRLTHRSIQKRMETWGIRQGLNSHLNPHKLRHSF 243 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTK 324 AT +A + + G + + YT Sbjct: 244 ATHMLEASSDLRAVQELLGHSNLSTTQIYTH 274 >gi|56551494|ref|YP_162333.1| integrase family protein [Zymomonas mobilis subsp. mobilis ZM4] gi|56543068|gb|AAV89222.1| integrase family protein [Zymomonas mobilis subsp. mobilis ZM4] Length = 307 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 47/281 (16%), Positives = 97/281 (34%), Gaps = 17/281 (6%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132 LI + + + N+ +++ S ++ + + T GV + ++ Sbjct: 16 LILRFLEMMAAESGSSPNTLMAYGSDLRLASQQLENGLVKADTDDLASLGVVWSDYARNT 75 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF-------KSF 185 + +++ +++ + + +P S+ + T ++++ Sbjct: 76 VARKSAALKHFYRFLLEEGMRTDDPSSSLPHAGISRNLPKILTTVEVERLFVTLQQRYER 135 Query: 186 WSEGSQPRLA--FEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIITVELPDGFM 242 + S RL E L SGLR S+ Q F I K G V + D Sbjct: 136 AATPSTLRLIALVELLYGSGLRASELVSLPKQAFIRKQPFLILKGKGGRERLVPISDRAT 195 Query: 243 KLLAMTPI---GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKFSATI 296 +A + K + + K ++ + K A +A + + S H +R AT Sbjct: 196 DAVAAWLVHVPEKSLWLFPSGKGHISRIRLYQLIKELAVEADLPRERVSPHVLRHAFATH 255 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 + GA L G + + YT + + + NSR Sbjct: 256 LLEGGADLRVLQLLLGHADISTTQIYTHVDSQKLVELVNSR 296 >gi|56708541|ref|YP_170437.1| integrase/recombinase XerC [Francisella tularensis subsp. tularensis SCHU S4] gi|89255722|ref|YP_513083.1| integrase/recombinase XerC [Francisella tularensis subsp. holarctica LVS] gi|110671012|ref|YP_667569.1| integrase/recombinase XerC [Francisella tularensis subsp. tularensis FSC198] gi|115314216|ref|YP_762939.1| integrase/recombinase XerC [Francisella tularensis subsp. holarctica OSU18] gi|156501676|ref|YP_001427741.1| phage integrase family protein [Francisella tularensis subsp. holarctica FTNF002-00] gi|224457717|ref|ZP_03666190.1| phage integrase family protein [Francisella tularensis subsp. tularensis MA00-2987] gi|254367099|ref|ZP_04983133.1| integrase/recombinase xerC [Francisella tularensis subsp. holarctica 257] gi|254371168|ref|ZP_04987170.1| site-specific recombinase [Francisella tularensis subsp. tularensis FSC033] gi|254875393|ref|ZP_05248103.1| integrase/recombinase xerC [Francisella tularensis subsp. tularensis MA00-2987] gi|290953429|ref|ZP_06558050.1| integrase/recombinase XerC [Francisella tularensis subsp. holarctica URFT1] gi|295313310|ref|ZP_06803933.1| integrase/recombinase XerC [Francisella tularensis subsp. holarctica URFT1] gi|56605033|emb|CAG46136.1| Integrase/recombinase XerC [Francisella tularensis subsp. tularensis SCHU S4] gi|89143553|emb|CAJ78731.1| Integrase/recombinase XerC [Francisella tularensis subsp. holarctica LVS] gi|110321345|emb|CAL09519.1| Integrase/recombinase XerC [Francisella tularensis subsp. tularensis FSC198] gi|115129115|gb|ABI82302.1| integrase/recombinase XerC [Francisella tularensis subsp. holarctica OSU18] gi|134252923|gb|EBA52017.1| integrase/recombinase xerC [Francisella tularensis subsp. holarctica 257] gi|151569408|gb|EDN35062.1| site-specific recombinase [Francisella tularensis subsp. tularensis FSC033] gi|156252279|gb|ABU60785.1| phage integrase family protein [Francisella tularensis subsp. holarctica FTNF002-00] gi|254841392|gb|EET19828.1| integrase/recombinase xerC [Francisella tularensis subsp. tularensis MA00-2987] gi|282159761|gb|ADA79152.1| integrase/recombinase XerC [Francisella tularensis subsp. tularensis NE061598] Length = 292 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 38/264 (14%), Positives = 93/264 (35%), Gaps = 18/264 (6%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI---RSGVESRKHTPSSAIQFLTSMR 141 + + + +++ Q+ + D + +T I + ++ ++P + + L+S+R Sbjct: 18 KNYSQETINNYQRDLLQLNQALSDKNIISLTHSDILIWIKKLHAQGNSPKTLQRKLSSVR 77 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG---SQPRLAFEF 198 F + + E V+ NP ++ PK + +++ ++ F+ Sbjct: 78 SFFNFLINSEIVSQNPANGIKAPKDSKRLPKVVNTDELAYLLDINPSNDIEARDIACFDL 137 Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------ELPDGFMKLLAMTP 249 L G+R S+ ++ + + +I+ G + L K+ Sbjct: 138 LYSCGIRLSELSSVELKDISISQKNIRVTGKGNKQRIVYFGTKTLSNLNRWL-KIRDSLK 196 Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATK-AGVNKSAHGVRKFSATISADAGATAHELM 308 + FI+ D + + + A K A + H +R A+ D+ + Sbjct: 197 PSSDYLFISRDGKHLTNRSIQKRLEIFAQKYASRHIHPHMLRHSFASHVLDSSKDLLAVK 256 Query: 309 ATYGWKTVDQAETYTKGADRIRLG 332 G + + YT + +L Sbjct: 257 DLLGHADISSTQIYTH-LNFQQLA 279 >gi|84393557|ref|ZP_00992311.1| tyrosine recombinase [Vibrio splendidus 12B01] gi|84375836|gb|EAP92729.1| tyrosine recombinase [Vibrio splendidus 12B01] Length = 310 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 39/270 (14%), Positives = 93/270 (34%), Gaps = 26/270 (9%) Query: 77 EYRKSAHWGSLAVNSRISFESYFDQI--------IRKSGDFDYRKITTKHIRSGVESRKH 128 EY +S L+++++ +++ + + ++ G D + + E K Sbjct: 22 EYLRSE--KGLSLHTQRNYKQQLETMAAHLVTLGLKDWGQVDAAWVRQLASKGMREGMKA 79 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF--- 185 SS L+S+R F + V + + NP V P+++ + +++ Q Sbjct: 80 --SSIATRLSSLRSFFDFLVLRGEMTANPAKGVSAPRKQRPLPKNLDVDEVGQLLDVNED 137 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------E 236 + R E + +GLR ++ ++ + I+ G Sbjct: 138 DPLSIRDRAMMEVMYGAGLRLAELVGINLKDVLGRQGEIRVIGKGDKERKAPFSGLAKEW 197 Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294 + + G++ F++ +++ + K V + S H +R A Sbjct: 198 VDKWLKVRGDLASPGEKALFVSKLGTRISHRSVQKRMEEWGKKQSVASHISPHKLRHSFA 257 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTK 324 T ++ + G + + + YT Sbjct: 258 THVLESSQNLRAVQELLGHENISTTQIYTH 287 >gi|237737422|ref|ZP_04567903.1| DNA integration/recombination/invertion protein [Fusobacterium mortiferum ATCC 9817] gi|229421284|gb|EEO36331.1| DNA integration/recombination/invertion protein [Fusobacterium mortiferum ATCC 9817] Length = 350 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 52/328 (15%), Positives = 124/328 (37%), Gaps = 23/328 (7%) Query: 26 RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYI-----NSPRKKPTTLKWLISEYRK 80 RK R+ Y + I Y+ +E + N K T K + + + Sbjct: 24 RKPRAVRVTTRYTLDCKQIRKYIGTYETKREAQESLFEYLKNPKLYKKITFKEITDLWFE 83 Query: 81 SAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSM 140 S + + + + + + D I H++ ++ + S + + Sbjct: 84 SYKKKIGSPKTLETNKYRL-RFLEPLNDMQITDIKLYHLQKLIDEIDTSWSFKNGCKSVL 142 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKT-EGIRPWTKEDMQQF------KSFWSEGSQPR 193 ++F++A + ++++ N +E K++ + +T+++++ K++ + + Sbjct: 143 NMIFEYAFKNDFISTNKVKFIELGKKEKVIERKIFTQKEIEILWENLNSKTYHGKYTY-- 200 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTII-TVELPDGFMKL-LAMTP 249 L+Y+G+R + + + N ++ KT + T+ + L Sbjct: 201 -IILILIYTGMRIGELFNLKTEDIDLENRTIKVRVSKTSAGVRTIPIFSKIFNLFKDNLI 259 Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELM 308 IG+E F + +++ F FK + G+ + H R AT+ +A A + ++ Sbjct: 260 IGQEYFVKGDTTTQLSYATFKPRFKKLLKELGIQEHTIHDTRHTFATMLNNANANSTSII 319 Query: 309 ATYGWKTVDQAE-TYT-KGADRIRLGIK 334 G E YT K + +R ++ Sbjct: 320 RLIGHSNFSTTENIYTHKDTEELRKAME 347 >gi|60280069|gb|AAX16408.1| integrase [uncultured murine large bowel bacterium BAC 54B] Length = 419 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 52/317 (16%), Positives = 105/317 (33%), Gaps = 38/317 (11%) Query: 34 RLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRI 93 RL E+ FI + + + + + Y + + + Sbjct: 114 RLKKDGENDFIKYFRKHWENELYSKPVRTTYK----------TSYNRFMRFLEATPRFQR 163 Query: 94 SFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYV 153 + S+ + + + A + R + A+ + + Sbjct: 164 -YTSFLR--------MELITPEMVTSFTDYLKKVAKGEGAHKSYYMFRTVILHAIEEGLM 214 Query: 154 AINPCLSVERPK-RKTEGIRPWTKEDMQQFKSFWSEG--SQPRLAFEFLLYSGLRCSDSC 210 NPC + + T T +++++ + EG + + AF F ++G+R D+ Sbjct: 215 KKNPCKGIVIHRDVNTLKKEILTMDEIKRLAATHYEGEDTALQRAFLFCCFTGIRWCDTV 274 Query: 211 RAGVQHLQ--NNIFSIKTQKT-----GTIITVELPDGFMKLL--AMTPIGKETFFINNDK 261 ++ I QKT + +T+ L +KL+ + ++ F I Sbjct: 275 SLTYANVDFSAKILRFNQQKTEGRSAHSGVTIPLSPTLLKLIGNPIQHTSEKIFNITCY- 333 Query: 262 QKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQA 319 + T+ W K AG+NK+ H R A AGA + + G ++ Sbjct: 334 RTTAITRLQKWVK----AAGINKTITWHCARHSFAVNVLGAGANIKTVASLMGHSSIKMT 389 Query: 320 ETYTKGADRIRLGIKNS 336 E Y D+ + NS Sbjct: 390 EKYLHVIDQQKQDAINS 406 >gi|257063600|ref|YP_003143272.1| tyrosine recombinase XerD [Slackia heliotrinireducens DSM 20476] gi|256791253|gb|ACV21923.1| tyrosine recombinase XerD [Slackia heliotrinireducens DSM 20476] Length = 309 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 42/262 (16%), Positives = 84/262 (32%), Gaps = 26/262 (9%) Query: 91 SRISFESYFDQIIRKSGDF---DYRKITTKHIRSG---VESRKHTPSSAIQFLTSMRVLF 144 + S+ + + I G+ D IT + + + R + SS + L++++ Sbjct: 32 TVGSYATDLNDYISFLGERGVPDSAAITRDDVVAYEYDLRRRGYADSSIERHLSALKGFH 91 Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----QQFKSFWSEGSQPRLAFEFLL 200 ++ V + NP V PK + ++ Q G + + A E L Sbjct: 92 RFLVGEGVTKGNPADLVSLPKVPDRLPDVLSVSEVNELLDQPFKDGPLGLRDQAALELLY 151 Query: 201 YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-------------ELPDGFMKLLAM 247 GLR S+ + + ++ G+ + L +G KL Sbjct: 152 GCGLRASELISLDLGDVFFAEGILRVMGKGSRERIVPIGGSAQRVLLDYLENGRPKLAKP 211 Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAG-VNKSAHGVRKFSATISADAGATAHE 306 + +N +++ + G + H +R AT + GA Sbjct: 212 SKTDG-AVILNARGGRLSRQALHTIVRTAGATIGRPDLHPHTLRHSFATHMLEGGADLRT 270 Query: 307 LMATYGWKTVDQAETYTKGADR 328 + G + + Y DR Sbjct: 271 IQEILGHSDISTTQIYVH-VDR 291 >gi|163791334|ref|ZP_02185747.1| site-specific recombinase, phage integrase family protein [Carnobacterium sp. AT7] gi|159873413|gb|EDP67504.1| site-specific recombinase, phage integrase family protein [Carnobacterium sp. AT7] Length = 299 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 41/287 (14%), Positives = 106/287 (36%), Gaps = 28/287 (9%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFE---SYFDQIIRKSGDFDYRKITTKHIR---SGV 123 T K + +Y + + ++ ++E ++F+ + ++GD ++ +T + +R + Sbjct: 5 TAKTIFLQYLITER--HYSELTKKAYEEDITHFESFLNQTGDTNFSNVTLQDVRIYLGEL 62 Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 + + +S + ++SMR +++ ++ + V NP + K+ + + +++M Sbjct: 63 NEQGLSRNSISRKISSMRAFYQFLLKNQLVEDNPFSYIHLKKKTLRLPKFFYEKEMDALF 122 Query: 184 SFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVE-- 236 + E L +G+R S+ ++ + + + K V Sbjct: 123 EAVKGEKPLDFRNEAILEILYGTGIRVSECSGIQLKDIDFDLSVLLIHGKGNKERYVPFG 182 Query: 237 ----------LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NK 284 + L+A + F+N+ + +T K+ + + Sbjct: 183 HYAAVAMRDYMEKSRTPLMAKYKKSHDLLFVNHHGDPITSTGIEYVLNQVIKKSSLTSDI 242 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 H +R AT + GA + G ++ + Y + RL Sbjct: 243 HPHMLRHSFATHLLNNGADMRTVQELLGHASLSSTQIYAH-VTKERL 288 >gi|149194285|ref|ZP_01871382.1| Phage integrase [Caminibacter mediatlanticus TB-2] gi|149135460|gb|EDM23939.1| Phage integrase [Caminibacter mediatlanticus TB-2] Length = 275 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 42/249 (16%), Positives = 92/249 (36%), Gaps = 18/249 (7%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLF 144 ++ N+ +++ Q K + D + + + + S+ S + L+++ F Sbjct: 16 KGVSKNTYEAYKRDLVQF-EKFIEKDIIDVDSNDVIRFL-SQIDNKRSLNRKLSAINSFF 73 Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS-----QPRLAFEFL 199 +A ++ YV +++ K + +KE++ S S + + FL Sbjct: 74 DFAYKRNYVDE--KFKIKQAKLPKSLPKYLSKEEILTPISHIDSNSSWFELRDKALILFL 131 Query: 200 LYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD----GFMKLLAMTPIGKETF 255 +GLR S++ + +++ ++ K V + D + LA P E Sbjct: 132 YATGLRISEALNIKLSDIEDGWVRVEMAKGEKQRLVPIADVALKAIEEYLAKRPCRSEYL 191 Query: 256 FINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKT 315 F+N + K++ K + S H +R AT A + G + Sbjct: 192 FVNKNCNKLSRISAFNITKKY-----LAVSPHVLRHSFATSLVLGNADLRVVQELLGHAS 246 Query: 316 VDQAETYTK 324 ++ + YT Sbjct: 247 LNTTQIYTH 255 >gi|124516260|gb|EAY57768.1| putative phage integrase family protein [Leptospirillum rubarum] gi|206603101|gb|EDZ39581.1| Putative phage integrase family protein [Leptospirillum sp. Group II '5-way CG'] Length = 321 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 45/293 (15%), Positives = 99/293 (33%), Gaps = 22/293 (7%) Query: 53 GSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS---GDF 109 GS R + + P + ++ + + + +++ D R G Sbjct: 5 GSGEFRNPGKTEGRVPGN-DDAVRDFLEELAQSGHSPRTLMAYRRDLDAFRRFLLLRGKD 63 Query: 110 DYRKITTKHIRS-----GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP 164 + + +E +++ P S ++ L+S+R ++W R+ NP + P Sbjct: 64 SPSDPSIDRTLALSYLFDLEQQEYRPRSVLRILSSLRSFYQWLCRKGRCPSNPFEDLSGP 123 Query: 165 KRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNN 220 +R ++ +M S + + E +G+R S+ L Sbjct: 124 RRPKTVPTVLSEREMATLLESRPGNSWEDRRDTVMLELFYLTGIRLSELAGLVRGDLSPG 183 Query: 221 IFSIKTQKTG-TIITVELPDGFMKLLA-----MTPIGKETFFINNDKQKMNATQFSIWFK 274 + I+ + G V L +LL G F ++ + ++ Q + Sbjct: 184 MDRIQVRGKGNKERMVPLLGLTRELLRDFLSEEGGPGAPLFAVSPGGEALSVHQIGRIVR 243 Query: 275 AKATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 + +G+ + H R AT D G ++ G +++ + YT Sbjct: 244 RRVRLSGLGDRGVTPHTFRHSCATHLLDRGMDLRKIQELLGHQSLGTTQKYTH 296 >gi|167754200|ref|ZP_02426327.1| hypothetical protein ALIPUT_02493 [Alistipes putredinis DSM 17216] gi|167658825|gb|EDS02955.1| hypothetical protein ALIPUT_02493 [Alistipes putredinis DSM 17216] Length = 372 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 63/362 (17%), Positives = 110/362 (30%), Gaps = 54/362 (14%) Query: 3 PSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHES-------------------TF 43 P ++L P R+G+ G+ IRL E F Sbjct: 8 PKIKLSP-----VVRNGREFVEVTFGNDNDIRLSLSKEENVLLVGGRAYLPAENFVLAEF 62 Query: 44 IPAY-------MSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFE 96 Y SA+ + P++E P Y + + ++ + Sbjct: 63 FDRYVKMAFIDYSAIKETAPRKEEDKRPPLPEG--------YLEKLQQVRYSDHTVRVYT 114 Query: 97 SYFDQIIRKSGDFDYRKITTKHIRSG----VESRKHTPSSAIQFLTSMRVLFKWAVRQEY 152 SYF + +T I + + + Q + +++ ++ + QE Sbjct: 115 SYFRDFQQYFEGRKIETVTPGEINDYLLYLIHEKNISSCQQNQRINAIKFYYEKVLGQER 174 Query: 153 VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRA 212 C V R KR+ +KE++++ + F L +GLR S+ Sbjct: 175 R----CYKVNRAKREKTLPDVLSKEEIKKILDVTVTDLRFFCMFSILYSAGLRISELLEL 230 Query: 213 GVQHLQNNI--FSIKTQKTGTIITVELPDGFMKLL---AMTPIGKETFFINNDKQKMNAT 267 + ++ K L MK L K F + + + Sbjct: 231 KPGDINEPRSLIRVRQGKGKKDRYTLLSKPLMKKLTEYNRLYKPKVWLFEHRPGEPFTES 290 Query: 268 QFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 S KA A +AG+ K H +R AT + G + G + E Y Sbjct: 291 IVSKRLKAAAREAGITKRIYPHLLRHSFATHLLEQGIDIKIVKELMGHNNIKTTERYVHI 350 Query: 326 AD 327 AD Sbjct: 351 AD 352 >gi|86142374|ref|ZP_01060884.1| tyrosine type site-specific recombinase [Leeuwenhoekiella blandensis MED217] gi|85831126|gb|EAQ49583.1| tyrosine type site-specific recombinase [Leeuwenhoekiella blandensis MED217] Length = 405 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 42/273 (15%), Positives = 87/273 (31%), Gaps = 18/273 (6%) Query: 68 PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES-R 126 P + K L+ Y L+ + + ++ Q + + + + R+ +E Sbjct: 106 PQSHKALLKRYVHYLKGQRLSEQTLKVYGNFTVQFLNHYKNKPIENLNVRAFRAFIEEVI 165 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 S + L ++ E+ ++RPK+ + +++++ Sbjct: 166 AFRRYSISSHRQCISALKHLSILLEFPKA-HFDGLQRPKKDKKLPVVLSRKEVIDLLRAT 224 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG---------TIITVEL 237 + R L +GLR + + + + +K V L Sbjct: 225 P-NLKHRTILALLYSAGLRIGELLALRCDAIDLDRMQVHIKKGKGRKDRTVKLAQAVVPL 283 Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSAT 295 +M+ A T D Q +A + K T+AG+ K + H +R AT Sbjct: 284 LLNYMESYAPT----HYLIPGRDGQGYSAGAIRTFLKKSCTRAGIKKAVTPHTLRHSYAT 339 Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADR 328 D G + G + YT + + Sbjct: 340 HMMDHGVALRHIQELLGHAKPETTMIYTHVSQQ 372 >gi|296115374|ref|ZP_06834012.1| phage integrase family protein [Gluconacetobacter hansenii ATCC 23769] gi|295978112|gb|EFG84852.1| phage integrase family protein [Gluconacetobacter hansenii ATCC 23769] Length = 383 Score = 117 bits (294), Expect = 2e-24, Method: Composition-based stats. Identities = 55/324 (16%), Positives = 106/324 (32%), Gaps = 19/324 (5%) Query: 19 GKIIY--YFRKGHGRRIRLPYPHESTFIPAYMS-------ALTGSTPKREYINSPRKKPT 69 G+ +Y ++R G R H S + A S +K Sbjct: 37 GRKVYVIHYRSGGRMRRYTIGQHGSPWTADLAREEAIKVLARVHSGENPADARLEDRKAM 96 Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESRKH 128 T++ + + L ++ ++ D I+ K G + I+ + + Sbjct: 97 TVREFSNRFLDEYVDVHLKPTTQSEYKRAVDLFIVPKFGTWRMADISRADVSGFHGDLRQ 156 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAI--NPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 P A + L + +F A NPC V+R K + R T+E+ + + Sbjct: 157 IPYQANRTLGVLSKMFSLADLWGIRTDGLNPCRGVQRYKEEKRE-RYLTQEEYARLGATL 215 Query: 187 SEG---SQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDGF 241 +E + A L+ +G R + H+ + + KTG I Sbjct: 216 NEAEDMPEAVWAIRLLILTGCRLREIQTLQWSHVFFDQSELRLPDSKTGAKIVQIGQAAI 275 Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADA 300 + A+T + + I K+ T ++ AG++ H +R A+ + + Sbjct: 276 NVIKAITRLEDNPYVITGRKKGGYLTDLQKPWRRIRKAAGLDDVRIHDLRHSFASDALEM 335 Query: 301 GATAHELMATYGWKTVDQAETYTK 324 GA + G + Y Sbjct: 336 GADLTMIGHMLGHSDIKTTARYAH 359 >gi|47566156|ref|ZP_00237184.1| phage integrase family domain protein [Bacillus cereus G9241] gi|47556709|gb|EAL15040.1| phage integrase family domain protein [Bacillus cereus G9241] Length = 308 Score = 117 bits (294), Expect = 2e-24, Method: Composition-based stats. Identities = 38/282 (13%), Positives = 92/282 (32%), Gaps = 30/282 (10%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFE---SYFDQIIRKSGDFDYRKITTKHIRSGV---E 124 LK+ + ++ + ++ + S+ F+ + + IT ++ + + Sbjct: 6 LKFAVLDFLDDREFKNVTPKTLQSYRDILKQFEDFCLEHDVINVEDITASIMKRYILHYQ 65 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 + + ++ L +R + + E + NP +++ + I +T ++Q + Sbjct: 66 KKGNNATTTNSKLQRIRAFLNYMIECEVIKNNPAKKIQKAREDVR-IDVFTDYHIKQMLN 124 Query: 185 FWSE---------GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIIT 234 ++ + LL +GLR S+ C + ++ K+ + Sbjct: 125 YYRRIKQREKTFYAYRDYSIIVVLLGTGLRQSELCSLKWTDIDFKYQTLSVFGKSRKRES 184 Query: 235 VELPDGFMKLLAMTPIG----------KETFFINNDKQKMNATQFSIWFKAKATK---AG 281 + + D + LA E F N +++ FK A Sbjct: 185 IPVADKVLMELATYKTFCEQTFVEKGLSEYVFTNRSNKQLTPNAVQNVFKRLAKIMNFKD 244 Query: 282 VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 V S+H R +G + + ++ E Y Sbjct: 245 VRLSSHTFRHTFCQRCIQSGMSTFAVQRLMRHSSIVVTERYA 286 >gi|317508416|ref|ZP_07966086.1| phage integrase [Segniliparus rugosus ATCC BAA-974] gi|316253263|gb|EFV12663.1| phage integrase [Segniliparus rugosus ATCC BAA-974] Length = 308 Score = 117 bits (294), Expect = 2e-24, Method: Composition-based stats. Identities = 44/291 (15%), Positives = 100/291 (34%), Gaps = 30/291 (10%) Query: 70 TLKWLISEYRKSAHW-GSLAVNSRISF----ESYFDQIIRKSGDFD--YRKITTKHIRSG 122 ++ + ++Y + + + N+ ++ +YF ++ +T +R Sbjct: 8 SISEVFAQYERHLRFERGRSPNTVRAYLGDLRAYFGPARDETAPARDVLGAVTIADLRGW 67 Query: 123 VESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179 + + ++ + + M+ F+WAVR A +P + + PK + K+ Sbjct: 68 LSEMTAEGASRATLARRASGMKTFFEWAVRGGLAAHDPTVRLTTPKLRKALPHVLRKDQA 127 Query: 180 QQFKSFWSEGS------QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTI 232 +Q + S + +L E L +G+R + C V + + K Sbjct: 128 EQALTSAPAPSDGALLLRDQLVLELLYGTGMRVGELCGLDVDDVDQGRRLATVLGKGDKQ 187 Query: 233 ITVELPDGFMKLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAK-ATKAG 281 V ++ P + +++ + A + G Sbjct: 188 RVVPFGAKASDAISAWLRDGRPKLAGPRSGAALLLGARGGRLDQRTARRVVHERVAREPG 247 Query: 282 V-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIR 330 + + HG+R +AT + GA + G ++ + YT +RIR Sbjct: 248 LPDLGPHGLRHSAATHLLEGGADLRVVQEILGHSSLATTQIYTHVSVERIR 298 >gi|312170746|emb|CBX79008.1| Tyrosine recombinase xerC [Erwinia amylovora ATCC BAA-2158] Length = 302 Score = 117 bits (294), Expect = 2e-24, Method: Composition-based stats. Identities = 37/259 (14%), Positives = 84/259 (32%), Gaps = 19/259 (7%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITT------KHIRSGVESRKHTPSSAIQFLT 138 L+ +++++ II + + + + + P+S L+ Sbjct: 22 RQLSPLTQVNYRRQLSAIIVLLDELKVVEWARLDAALVRSLAARSTRSGLKPASLALRLS 81 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQPRLA 195 ++R W V Q + NP V P+ + +++ + + R Sbjct: 82 ALRSFLDWLVSQGAIKANPAKGVATPRAARHLPKNIDVDEVNRLLEIDLNDPLAVRDRAM 141 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT--------IITVELPDGFMKLLAM 247 E + +GLR S+ + HL + G+ V + ++ + + Sbjct: 142 LEAMYGAGLRLSELVGIDLGHLDLASGEVWVIGKGSKERRLPMGRTAVHWVENWLAMREL 201 Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAH 305 F++N ++++ F K GV + H +R AT ++ Sbjct: 202 FEPQDNALFLSNQGKRISTRNVQKRFAEWGVKQGVSSHIHPHKLRHSFATHMLESSGDLR 261 Query: 306 ELMATYGWKTVDQAETYTK 324 + G + + YT Sbjct: 262 AVQELLGHANLTTTQIYTH 280 >gi|317129216|ref|YP_004095498.1| tyrosine recombinase XerC [Bacillus cellulosilyticus DSM 2522] gi|315474164|gb|ADU30767.1| tyrosine recombinase XerC [Bacillus cellulosilyticus DSM 2522] Length = 297 Score = 117 bits (294), Expect = 2e-24, Method: Composition-based stats. Identities = 42/237 (17%), Positives = 86/237 (36%), Gaps = 23/237 (9%) Query: 115 TTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174 + + + + ++ +S + ++++R + + +R+E V NP SV PK + Sbjct: 53 DIRDYLTVLHQKAYSRNSIARKISALRSFYSFLMREEIVKENPFQSVTTPKGGKRLPTFF 112 Query: 175 TKEDMQQFKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKT 229 +E++ + G + E L +G+R S+ + N+I + K Sbjct: 113 FEEELAKLFDSTDTSKPLGKRNNAILELLYATGIRVSECVSLNLMDYDNDIGTLFVRGKG 172 Query: 230 GTIITVE--------LPDGF---MKLLAMTPIGKETFFINNDKQKMNATQ----FSIWFK 274 V L D L K+ F+N +++ + + Sbjct: 173 KKERYVPVGSFAMEALNDYLNNGRPHLRSNQTNKDALFVNYRGGRLSDRSIRTILNNIVR 232 Query: 275 AKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIR 330 +T + + S H +R AT + GA + G + + YT DR+R Sbjct: 233 DASTASRI--SPHVLRHTFATHMLNEGADLRTVQELLGHSRLSSTQVYTHVTKDRLR 287 >gi|34810656|pdb|1P7D|A Chain A, Crystal Structure Of The Lambda Integrase (Residues 75-356) Bound To Dna gi|34810657|pdb|1P7D|B Chain B, Crystal Structure Of The Lambda Integrase (Residues 75-356) Bound To Dna Length = 283 Score = 117 bits (294), Expect = 2e-24, Method: Composition-based stats. Identities = 49/277 (17%), Positives = 96/277 (34%), Gaps = 19/277 (6%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH- 128 TL + Y K + + I++ S I R D ITTK I + + Sbjct: 2 TLHSWLDRYEKILASRGIKQKTLINYMSKIKAIRRGLPDAPLEDITTKEIAAMLNGYIDE 61 Query: 129 -TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 +SA +++ F+ A+ + ++ N + K + R E ++ +++ S Sbjct: 62 GKAASAKLIRSTLSDAFREAIAEGHITTNHVAATRAAKSEVRRSRLTADEYLKIYQAAES 121 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE---------LP 238 RLA E + +G R D C + + ++ KTG I + + Sbjct: 122 SPCWLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAIPTALHIDALGIS 181 Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-----NKSAHGVRKFS 293 +G ET + ++ +++ S +F +G+ + H +R Sbjct: 182 MKETLDKCKEILGGETIIASTRREPLSSGTVSRYFMRARKASGLSFEGDPPTFHELR-SL 240 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 + + + G K+ A DR R Sbjct: 241 SARLYEKQISDKFAQHLLGHKSDTMASQ--XRDDRGR 275 >gi|257791851|ref|YP_003182457.1| tyrosine recombinase XerD [Eggerthella lenta DSM 2243] gi|257475748|gb|ACV56068.1| tyrosine recombinase XerD [Eggerthella lenta DSM 2243] Length = 297 Score = 117 bits (294), Expect = 2e-24, Method: Composition-based stats. Identities = 38/277 (13%), Positives = 78/277 (28%), Gaps = 28/277 (10%) Query: 76 SEYRKSAHWGSL----AVNSRISFESYFDQIIRKSGDFDYRKITTKH------IRSGVES 125 YR+ + + + + ++ + + + S + Sbjct: 3 ELYREYLAYLRVERGSSPLTVSAYAADLKDYAQFLEKRGVESLDDVDREVIVAYESDLFG 62 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 R + S+ + ++ ++ ++ VR+ Y NP +++ PK + + S Sbjct: 63 RGYAASTVDRHVSVLKGFHRFLVREGYARRNPADTIQLPKAPDRLPDVLSVAQVDAMLSR 122 Query: 186 W----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE----- 236 + R E L GLR S+ + + G + Sbjct: 123 PLDEGPLALRNRAILEVLYGCGLRVSECTGLDLGDAILEEGYLHILGKGNKERIAPISGA 182 Query: 237 --------LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAH 287 L G +L+ F+N ++ GV N H Sbjct: 183 ALRALRDYLERGRPELVRSYAKSTSAVFLNARGGRLTRQSVHSLVAEAGRFIGVANLHPH 242 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 +R AT GA + G + + YT Sbjct: 243 TLRHSFATHMLAGGADLRVIQEILGHSDISTTQIYTH 279 >gi|218530686|ref|YP_002421502.1| tyrosine recombinase XerD [Methylobacterium chloromethanicum CM4] gi|218522989|gb|ACK83574.1| tyrosine recombinase XerD [Methylobacterium chloromethanicum CM4] Length = 328 Score = 117 bits (294), Expect = 2e-24, Method: Composition-based stats. Identities = 45/273 (16%), Positives = 85/273 (31%), Gaps = 28/273 (10%) Query: 85 GSLAVNSRISFESYFDQIIRK-----SGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139 A N+ ++ D + + + + + +E R SSA + L+ Sbjct: 27 RGAAANTLAAYRRDLDDYLGYLAQGGIDPEEAQAEQVRAYIASLEPRGLKASSAARRLSC 86 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP------- 192 +R ++ + Y +P V P+R + + ++ + + E + Sbjct: 87 IRGFHRFLYAEGYSETDPTAPVAAPRRAKGLPKVLSVAEVDRLLATARERVEAAGDDRAE 146 Query: 193 -------RLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKL 244 E L +GLR S+ + + K G V L D + Sbjct: 147 ARAAARMLCLLELLYATGLRVSELVALPRSAAATRERYLVVKGKGGRERLVPLTDLAREA 206 Query: 245 LAM-----TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATI 296 + T G F ++ + F+ K A AG+ S H +R A+ Sbjct: 207 MRTHVAHLTAEGAWLFPAESESGHLTRQAFARDLKTAAAAAGLRTDRVSPHVLRHAFASH 266 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRI 329 GA + G + + YT D Sbjct: 267 LLQNGADLRIVQELLGHADISTTQIYTHVLDER 299 >gi|325129523|gb|EGC52350.1| tyrosine recombinase XerC [Neisseria meningitidis OX99.30304] gi|325135646|gb|EGC58263.1| tyrosine recombinase XerC [Neisseria meningitidis M0579] Length = 305 Score = 117 bits (294), Expect = 2e-24, Method: Composition-based stats. Identities = 36/278 (12%), Positives = 84/278 (30%), Gaps = 24/278 (8%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD-------YRKITTKHIRSGV 123 Y ++ + ++ ++ +++ + ++ + + + Sbjct: 6 FAAHFDAYLENIVREGKSEHTVAAYRRDLEELFALLAQMPSEDAGGVPQDLSRRDFTAAL 65 Query: 124 ES---RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 R + + L+S R W V + + +P ++ PK+ + +E + Sbjct: 66 RRLSQRGLNARTLARKLSSWRQYCVWLVERGLLHTDPTADIKPPKQPERVPKALPQEWLN 125 Query: 181 QFKSF-----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIIT 234 + + FE + SGLR S+ + + + G Sbjct: 126 RMLDLPVDGGDPLAVRDHALFELMYGSGLRVSEIHGLNADDVYLDEAWVHVTGKGRKQRQ 185 Query: 235 VELP----DGFMKL--LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK--AGVNKSA 286 V L + L T + F + +++ Q A + G + S Sbjct: 186 VSLTGKSVEALKNYLPLRQTASDGKALFTGRNGTRLSQRQIQKRLAQWAAQNGDGRHVSP 245 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R A A + G ++ + YTK Sbjct: 246 HMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTK 283 >gi|14591576|ref|NP_143658.1| integrase/recombinase [Pyrococcus horikoshii OT3] gi|73920474|sp|O59490|XERCL_PYRHO RecName: Full=Probable tyrosine recombinase xerC-like gi|3258262|dbj|BAA30945.1| 285aa long hypothetical integrase/recombinase [Pyrococcus horikoshii OT3] Length = 285 Score = 117 bits (294), Expect = 2e-24, Method: Composition-based stats. Identities = 41/284 (14%), Positives = 101/284 (35%), Gaps = 20/284 (7%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131 ++ E+ + N+ + Y + + + + + ++ Sbjct: 10 SDILEEFATYLELEGKSKNTIRMYTYYLSKFFEEG--YSPTARDALKFLAKLRKSGYSIR 67 Query: 132 SAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 S + +++ FK+ + E ++ PK + T++++++ S Sbjct: 68 SLNLVIQALKSYFKFEGLDSE------AEKLKNPKIPKSLPKSLTEDEVKKIVSVAD-NL 120 Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNN--IFSIKTQKTGTIITVELPDGFM----KL 244 + +L L +GLR S+ C ++ + ++ K G + + + + Sbjct: 121 RDKLILLLLYGAGLRVSELCNLKIEDVNFEKSFLIVRGGKGGKDRVIPISKTLLFEIERY 180 Query: 245 LAMTPIGKETFFI---NNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAG 301 L F+ N K K++ + K K G+N + H +R AT + G Sbjct: 181 LKTRKDNSPYLFVEKRRNRKDKLSPKTVWMLVKKYGKKVGLNVTPHQLRHSFATHMLERG 240 Query: 302 ATAHELMATYGWKTVDQAETYTKGADR-IRLGIKNSRRISSVVD 344 + G + + YTK + +R I+ ++ I +++ Sbjct: 241 VDIRIIQELLGHANLSTTQIYTKVTTKHLREAIEKAKLIETILG 284 >gi|187931223|ref|YP_001891207.1| site-specific recombinase [Francisella tularensis subsp. mediasiatica FSC147] gi|187712132|gb|ACD30429.1| site-specific recombinase [Francisella tularensis subsp. mediasiatica FSC147] Length = 292 Score = 117 bits (294), Expect = 2e-24, Method: Composition-based stats. Identities = 38/264 (14%), Positives = 93/264 (35%), Gaps = 18/264 (6%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI---RSGVESRKHTPSSAIQFLTSMR 141 + + + +++ Q+ + D + +T I + ++ ++P + + L+S+R Sbjct: 18 KNYSQETINNYQRDLLQLNQALSDKNIISLTHSDILIWIKKLHAQGNSPKTLQRKLSSVR 77 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG---SQPRLAFEF 198 F + + E V+ NP ++ PK + +++ ++ F+ Sbjct: 78 SFFNFLINSEIVSQNPANGIKAPKDSKRLPKVVNTDELAYLLDINPSNDIEARDIACFDL 137 Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------ELPDGFMKLLAMTP 249 L G+R S+ ++ + + +I+ G + L K+ Sbjct: 138 LYSCGIRLSELSSVELKDISISQKNIRVTGKGNKQRIVYFGTKTLSNLSRWL-KIRDSLK 196 Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATK-AGVNKSAHGVRKFSATISADAGATAHELM 308 + FI+ D + + + A K A + H +R A+ D+ + Sbjct: 197 PSSDYLFISRDGKHLTNRSIQKRLEIFAQKYASRHIHPHMLRHSFASHVLDSSKDLLAVK 256 Query: 309 ATYGWKTVDQAETYTKGADRIRLG 332 G + + YT + +L Sbjct: 257 DLLGHADISSTQIYTH-LNFQQLA 279 >gi|148559335|ref|YP_001259359.1| phage integrase family site specific recombinase [Brucella ovis ATCC 25840] gi|148370592|gb|ABQ60571.1| site-specific recombinase, phage integrase family [Brucella ovis ATCC 25840] Length = 125 Score = 117 bits (294), Expect = 2e-24, Method: Composition-based stats. Identities = 29/124 (23%), Positives = 54/124 (43%), Gaps = 2/124 (1%) Query: 224 IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283 ++ KTG + + + ++L TP ET + + + + A + Sbjct: 1 MRQGKTGKRLFLPITPILSEVLEATPRQGETVLVTAYGEPFSPKSLTGRMADWTASAKLP 60 Query: 284 K--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341 K + HG+RK I A+ GA+ ++M T G + AE YT+ A++ RL R+ Sbjct: 61 KGFTLHGLRKTLGKILAEGGASTRQIMDTLGHDDIAHAELYTREAEQARLATDGMSRVVR 120 Query: 342 VVDS 345 + + Sbjct: 121 LKRN 124 >gi|189183847|ref|YP_001937632.1| putative integrase [Orientia tsutsugamushi str. Ikeda] gi|189180618|dbj|BAG40398.1| putative integrase [Orientia tsutsugamushi str. Ikeda] Length = 348 Score = 117 bits (294), Expect = 2e-24, Method: Composition-based stats. Identities = 52/270 (19%), Positives = 96/270 (35%), Gaps = 16/270 (5%) Query: 65 RKKPTTLKWL----ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120 + T K L I EY K +R + ++K + I Sbjct: 53 KANDITFKELCYKYIEEYAKIYIIHWQKDAAR-IYNYGKQLFLKKINEVKRNDIQQIF-- 109 Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 S+K ++A L ++R +F A + + NP L +E+ K + R + + M Sbjct: 110 -NDISKKGKYATANLILLTLRTIFNKAKKWGLIENNPTLGIEQHKLQARERR-LSYDKMG 167 Query: 181 QFKSFWSEGSQP--RLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVE 236 + + P R LY+G R S+ ++ I+ I K G + Sbjct: 168 RLLHVLCGETTPLIRDFALLALYTGARKSNVLEMEWDNIDFERKIWHIPKTKNGKAQNIP 227 Query: 237 LPDGFMKLLAMTPIGKET--FFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFS 293 L D M++L E+ + + + + + KAG+ N H +R+ Sbjct: 228 LTDEAMEILQARKFTSESKWVLPSTTSASGHLERPNNSWHRVCKKAGIKNLRIHDLRRTF 287 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYT 323 A+ D GA+ + + + +YT Sbjct: 288 ASCMGDVGASQRTISIALNHISPESTISYT 317 >gi|297537394|ref|YP_003673163.1| tyrosine recombinase XerC [Methylotenera sp. 301] gi|297256741|gb|ADI28586.1| tyrosine recombinase XerC [Methylotenera sp. 301] Length = 294 Score = 117 bits (294), Expect = 2e-24, Method: Composition-based stats. Identities = 32/270 (11%), Positives = 84/270 (31%), Gaps = 20/270 (7%) Query: 75 ISEYRKSAHW-GSLAVNSRISFES---YFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130 + +Y + + L+ + ++ + + + + + + R + Sbjct: 4 LDDYLQHLTFERGLSALTLKNYARDIQLLESLADNTALDTVTNTQIRRYIATLHGRGLSG 63 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 + + L++ R + + + NP + + PK + + + +F +G Sbjct: 64 KTIARALSAWRGFYNYLTHHKGYTQNPVMGLRAPKSAKTLPQALSTDQAVKFVDIKGDGP 123 Query: 191 ---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------ELP 238 + E SGLR ++ + L + ++ G + + Sbjct: 124 LERRDHAILELFYSSGLRLAELVNLDIGMLDFSEGTVTVTGKGNKTRIVPMGSHAVSAIQ 183 Query: 239 DGFM--KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSA 294 L+ + I F+ +++ K + K G+N S H +R A Sbjct: 184 TWLQSRALIKIADINPNALFVTQQGKRITPRAVQYRVKEWSIKQGLNISMHPHLLRHSFA 243 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTK 324 + + + G + + YT Sbjct: 244 SHVLQSSQDLRAVQEMLGHANISTTQIYTH 273 >gi|51459866|gb|AAU03829.1| integrase/recombinase [Rickettsia typhi str. Wilmington] Length = 297 Score = 117 bits (294), Expect = 2e-24, Method: Composition-based stats. Identities = 48/276 (17%), Positives = 97/276 (35%), Gaps = 38/276 (13%) Query: 85 GSLAVNSRISFESYFDQI-----IRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139 +L+ NS +S++ +K + + + + S S + +++ Sbjct: 6 RALSKNSILSYKRDLLDFHNYLTKQKISELNITTRNIRKWIEYLASNNLHARSINRKIST 65 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-----SEGSQPRL 194 ++ + + + + + A NP L+V+ PK + + + + ++ + EG + Sbjct: 66 IKSYYTFLISENHTAFNPVLNVDLPKYQNKLPVILSIDQIKLILEYCSKDHTPEGIRLNA 125 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNN---------IFSIKTQKTGTIITVELPDGFMKLL 245 L SGLR S+ + + N IFS+ + + V + + Sbjct: 126 MIHLLYASGLRVSELVSLKLADILTNNTSKGIVRKIFSVLGKGNKERVIVINDQAVLSIT 185 Query: 246 AMTPIGKETFFINNDKQK--------------MNATQFSIWFKAKATKAGVN---KSAHG 288 I F+N K K M F+I K+ A G+N S H Sbjct: 186 KYLKIRD--IFVNKAKSKNLIYLFPSSAVAGYMTRQNFAILLKSVALDIGLNPKNVSPHI 243 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 +R A+ + GA + G + + YT Sbjct: 244 LRHSFASHLLEGGADLRVIQELLGHADISTTQIYTH 279 >gi|296269467|ref|YP_003652099.1| tyrosine recombinase XerD [Thermobispora bispora DSM 43833] gi|296092254|gb|ADG88206.1| tyrosine recombinase XerD [Thermobispora bispora DSM 43833] Length = 313 Score = 117 bits (294), Expect = 2e-24, Method: Composition-based stats. Identities = 49/275 (17%), Positives = 97/275 (35%), Gaps = 34/275 (12%) Query: 89 VNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----KHTPS----SAIQFLTSM 140 + R Y D + + G ++ + + + + P+ SA + +++ Sbjct: 28 ASYRRDLRRYLDHLKAR-GLRTLAEVREDDVAAFLTALREGDADHPALVASSAARAFSAV 86 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-----SEGSQPRLA 195 R L ++A+R+ +P ++ P++ + + E++++ + + R Sbjct: 87 RGLHRFALREGLTRHDPAHAIRPPRQLRRLPKAISVEEVERLIAACGPDGSPLTLRNRAL 146 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNI-------FSIKTQKTGTIITVELPDGFMKLL--- 245 E L +G R S++ V + K G V L + L Sbjct: 147 LELLYGTGARISEAVGLAVDDVTTGAPTDPARDQVRLRGKGGRTRIVPLGRYARQALDAY 206 Query: 246 --------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATI 296 A G F+N ++ +A A +AG++ S H +R AT Sbjct: 207 LVRARPQLAAQGRGTSALFLNARGGRLTRQGAWEVLQAAAERAGLSGVSPHMLRHSFATH 266 Query: 297 SADAGATAHELMATYGWKTVDQAETYT-KGADRIR 330 D GA + G +V + YT DR+R Sbjct: 267 LLDGGADVRVVQELLGHASVATTQVYTLVTVDRLR 301 >gi|206975126|ref|ZP_03236040.1| DNA integration/recombination/invertion protein [Bacillus cereus H3081.97] gi|217959606|ref|YP_002338158.1| DNA integration/recombination/invertion protein [Bacillus cereus AH187] gi|229138832|ref|ZP_04267413.1| DNA integration/recombination/invertion protein [Bacillus cereus BDRD-ST26] gi|206746547|gb|EDZ57940.1| DNA integration/recombination/invertion protein [Bacillus cereus H3081.97] gi|217066212|gb|ACJ80462.1| DNA integration/recombination/invertion protein [Bacillus cereus AH187] gi|228644748|gb|EEL00999.1| DNA integration/recombination/invertion protein [Bacillus cereus BDRD-ST26] Length = 369 Score = 117 bits (294), Expect = 2e-24, Method: Composition-based stats. Identities = 53/312 (16%), Positives = 105/312 (33%), Gaps = 38/312 (12%) Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVE 124 TLK + ++ + + ++ S+ S II G K+ HI+ + Sbjct: 60 PSKITLKDYLVQWLEIKK-MCVEKSTFSSYSSNITYHIIPSIGMIALHKLNVIHIQKCYK 118 Query: 125 SRKHTPSSAIQFLTSMRVL---FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 S S L R+L AV+Q ++ NP VE PK++ I+ WT+E++++ Sbjct: 119 SALDNGVSNNSILLLHRILKTALNLAVKQNIISRNPADFVEIPKKEKTSIQTWTEEEVKR 178 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--------------NNIFSIKTQ 227 F S+ S+ +A+ + +G+R + Q + ++ + Sbjct: 179 FL-LHSQESRYHIAYLIAITTGMRLGEVLGLRWQDVDFRNHTVTINQTVGGDDKVKNTAK 237 Query: 228 KTGTIITVELPDGFMKLLAMTPI--------------GKETFFINNDKQKMNATQFSIWF 273 + T+ +P ++ + I + N + F F Sbjct: 238 TNASKRTIPVPVETIEAIKKHRIQINKEKLRMGSAYQDLDLINCNESGGVLKRDAFRRKF 297 Query: 274 KAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGADRIRL 331 + A V K H +R ATI G + G + Y+ + Sbjct: 298 YKEINNAKVKKIKIHDLRHTHATILLKQGVNPKIISERLGHTDISLTLRVYSHVL--PNM 355 Query: 332 GIKNSRRISSVV 343 + + + Sbjct: 356 QEEAVKNFGKSI 367 >gi|15608839|ref|NP_216217.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis H37Rv] gi|15841158|ref|NP_336195.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis CDC1551] gi|31792887|ref|NP_855380.1| site-specific tyrosine recombinase XerD [Mycobacterium bovis AF2122/97] gi|121637608|ref|YP_977831.1| site-specific tyrosine recombinase XerD [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148661498|ref|YP_001283021.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis H37Ra] gi|148822907|ref|YP_001287661.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis F11] gi|167969182|ref|ZP_02551459.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis H37Ra] gi|215403996|ref|ZP_03416177.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis 02_1987] gi|215411348|ref|ZP_03420156.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis 94_M4241A] gi|215427023|ref|ZP_03424942.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis T92] gi|215430593|ref|ZP_03428512.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis EAS054] gi|215445888|ref|ZP_03432640.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis T85] gi|218753409|ref|ZP_03532205.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis GM 1503] gi|219557623|ref|ZP_03536699.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis T17] gi|224990083|ref|YP_002644770.1| site-specific tyrosine recombinase [Mycobacterium bovis BCG str. Tokyo 172] gi|253799261|ref|YP_003032262.1| integrase [Mycobacterium tuberculosis KZN 1435] gi|254231896|ref|ZP_04925223.1| hypothetical protein TBCG_01654 [Mycobacterium tuberculosis C] gi|254364540|ref|ZP_04980586.1| hypothetical integrase/recombinase [Mycobacterium tuberculosis str. Haarlem] gi|254550710|ref|ZP_05141157.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260200764|ref|ZP_05768255.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis T46] gi|260204970|ref|ZP_05772461.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis K85] gi|289443158|ref|ZP_06432902.1| tyrosine recombinase XerD [Mycobacterium tuberculosis T46] gi|289554527|ref|ZP_06443737.1| integrase [Mycobacterium tuberculosis KZN 605] gi|289569749|ref|ZP_06449976.1| integrase [Mycobacterium tuberculosis T17] gi|289574368|ref|ZP_06454595.1| integrase [Mycobacterium tuberculosis K85] gi|289745862|ref|ZP_06505240.1| tyrosine recombinase xerD [Mycobacterium tuberculosis 02_1987] gi|289750256|ref|ZP_06509634.1| integrase [Mycobacterium tuberculosis T92] gi|289753791|ref|ZP_06513169.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis EAS054] gi|289757810|ref|ZP_06517188.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis T85] gi|289761856|ref|ZP_06521234.1| tyrosine recombinase xerD [Mycobacterium tuberculosis GM 1503] gi|294993190|ref|ZP_06798881.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis 210] gi|297634253|ref|ZP_06952033.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis KZN 4207] gi|297731240|ref|ZP_06960358.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis KZN R506] gi|298525199|ref|ZP_07012608.1| integrase/recombinase XerD [Mycobacterium tuberculosis 94_M4241A] gi|306775886|ref|ZP_07414223.1| integrase [Mycobacterium tuberculosis SUMu001] gi|306779704|ref|ZP_07418041.1| integrase [Mycobacterium tuberculosis SUMu002] gi|306784437|ref|ZP_07422759.1| integrase [Mycobacterium tuberculosis SUMu003] gi|306788804|ref|ZP_07427126.1| integrase [Mycobacterium tuberculosis SUMu004] gi|306793139|ref|ZP_07431441.1| integrase [Mycobacterium tuberculosis SUMu005] gi|306797519|ref|ZP_07435821.1| integrase [Mycobacterium tuberculosis SUMu006] gi|306803400|ref|ZP_07440068.1| integrase [Mycobacterium tuberculosis SUMu008] gi|306807982|ref|ZP_07444650.1| integrase [Mycobacterium tuberculosis SUMu007] gi|306967799|ref|ZP_07480460.1| integrase [Mycobacterium tuberculosis SUMu009] gi|306971995|ref|ZP_07484656.1| integrase [Mycobacterium tuberculosis SUMu010] gi|307079707|ref|ZP_07488877.1| integrase [Mycobacterium tuberculosis SUMu011] gi|307084286|ref|ZP_07493399.1| integrase [Mycobacterium tuberculosis SUMu012] gi|313658572|ref|ZP_07815452.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis KZN V2475] gi|54039885|sp|P67637|XERD_MYCBO RecName: Full=Tyrosine recombinase xerD gi|54042782|sp|P67636|XERD_MYCTU RecName: Full=Tyrosine recombinase xerD gi|2326744|emb|CAB10958.1| PROBABLE INTEGRASE/RECOMBINASE [Mycobacterium tuberculosis H37Rv] gi|13881378|gb|AAK46009.1| integrase/recombinase XerD [Mycobacterium tuberculosis CDC1551] gi|31618477|emb|CAD96395.1| PROBABLE INTEGRASE/RECOMBINASE [Mycobacterium bovis AF2122/97] gi|121493255|emb|CAL71726.1| Probable integrase/recombinase [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|124600955|gb|EAY59965.1| hypothetical protein TBCG_01654 [Mycobacterium tuberculosis C] gi|134150054|gb|EBA42099.1| hypothetical integrase/recombinase [Mycobacterium tuberculosis str. Haarlem] gi|148505650|gb|ABQ73459.1| tyrosine recombinase [Mycobacterium tuberculosis H37Ra] gi|148721434|gb|ABR06059.1| hypothetical integrase/recombinase [Mycobacterium tuberculosis F11] gi|224773196|dbj|BAH26002.1| site-specific tyrosine recombinase [Mycobacterium bovis BCG str. Tokyo 172] gi|253320764|gb|ACT25367.1| integrase [Mycobacterium tuberculosis KZN 1435] gi|289416077|gb|EFD13317.1| tyrosine recombinase XerD [Mycobacterium tuberculosis T46] gi|289439159|gb|EFD21652.1| integrase [Mycobacterium tuberculosis KZN 605] gi|289538799|gb|EFD43377.1| integrase [Mycobacterium tuberculosis K85] gi|289543503|gb|EFD47151.1| integrase [Mycobacterium tuberculosis T17] gi|289686390|gb|EFD53878.1| tyrosine recombinase xerD [Mycobacterium tuberculosis 02_1987] gi|289690843|gb|EFD58272.1| integrase [Mycobacterium tuberculosis T92] gi|289694378|gb|EFD61807.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis EAS054] gi|289709362|gb|EFD73378.1| tyrosine recombinase xerD [Mycobacterium tuberculosis GM 1503] gi|289713374|gb|EFD77386.1| site-specific tyrosine recombinase XerD [Mycobacterium tuberculosis T85] gi|298494993|gb|EFI30287.1| integrase/recombinase XerD [Mycobacterium tuberculosis 94_M4241A] gi|308215637|gb|EFO75036.1| integrase [Mycobacterium tuberculosis SUMu001] gi|308327355|gb|EFP16206.1| integrase [Mycobacterium tuberculosis SUMu002] gi|308330798|gb|EFP19649.1| integrase [Mycobacterium tuberculosis SUMu003] gi|308334621|gb|EFP23472.1| integrase [Mycobacterium tuberculosis SUMu004] gi|308338408|gb|EFP27259.1| integrase [Mycobacterium tuberculosis SUMu005] gi|308342131|gb|EFP30982.1| integrase [Mycobacterium tuberculosis SUMu006] gi|308345601|gb|EFP34452.1| integrase [Mycobacterium tuberculosis SUMu007] gi|308349918|gb|EFP38769.1| integrase [Mycobacterium tuberculosis SUMu008] gi|308354539|gb|EFP43390.1| integrase [Mycobacterium tuberculosis SUMu009] gi|308358516|gb|EFP47367.1| integrase [Mycobacterium tuberculosis SUMu010] gi|308362455|gb|EFP51306.1| integrase [Mycobacterium tuberculosis SUMu011] gi|308366075|gb|EFP54926.1| integrase [Mycobacterium tuberculosis SUMu012] gi|323719791|gb|EGB28905.1| integrase [Mycobacterium tuberculosis CDC1551A] gi|326903315|gb|EGE50248.1| integrase [Mycobacterium tuberculosis W-148] gi|328459013|gb|AEB04436.1| integrase [Mycobacterium tuberculosis KZN 4207] Length = 311 Score = 117 bits (294), Expect = 2e-24, Method: Composition-based stats. Identities = 43/274 (15%), Positives = 86/274 (31%), Gaps = 35/274 (12%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH----IRSGVESRKHTPSS-------- 132 +A N+ S+ + + + + V R+ P S Sbjct: 19 RGVAANTLSSYRRDLRRYSKHLEERGITDLAKVGEHDVSEFLVALRRGDPDSGTAALSAV 78 Query: 133 -AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----- 186 A + L ++R L ++A + ++ +V P + T +++ Sbjct: 79 SAARALIAVRGLHRFAAAEGLAELDVARAVRPPTPSRRLPKSLTIDEVLSLLEGAGGDKP 138 Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFM 242 + R E L +G R S++ + + + + K G V + + Sbjct: 139 SDGPLTLRNRAVLELLYSTGARISEAVGLDLDDIDTHARSVLLRGKGGKQRLVPVGRPAV 198 Query: 243 KLL-----------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289 L A G F+N +++ + A +AG+ S H + Sbjct: 199 HALDAYLVRGRPDLARRGRGTAAIFLNARGGRLSRQSAWQVLQDAAERAGITAGVSPHML 258 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYT 323 R AT + GA + G +V + YT Sbjct: 259 RHSFATHLLEGGADVRVVQELLGHASVTTTQIYT 292 >gi|320539384|ref|ZP_08039053.1| site-specific tyrosine recombinase [Serratia symbiotica str. Tucson] gi|320030509|gb|EFW12519.1| site-specific tyrosine recombinase [Serratia symbiotica str. Tucson] Length = 303 Score = 117 bits (294), Expect = 2e-24, Method: Composition-based stats. Identities = 41/259 (15%), Positives = 88/259 (33%), Gaps = 19/259 (7%) Query: 85 GSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIR--SGVESRKHTPSSAIQF-LT 138 L+ +++S+ + + G ++ + +R + R S+++ L+ Sbjct: 23 RQLSPLTQLSYAHQLQALMLLAQSIGVSEWTSLDAAAVRMLAVRSKRAGLQSASLALRLS 82 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQPRLA 195 S+R W V Q + NP + P+ + ++M Q + R Sbjct: 83 SLRSFLDWLVSQGVLNANPAKGIRTPRSGRHLPKNIDVDEMNQLLDIDLNDPLAVRDRAM 142 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT--------IITVELPDGFMKLLAM 247 E + +GLR S+ +H+ I G+ V ++ + + Sbjct: 143 LETMYGAGLRLSELVGLDCRHIDLAAGEIWVMGKGSKERKLPLGRTAVTWLQHWLAIREL 202 Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAH 305 + F++N ++++ F K GVN H +R AT ++ Sbjct: 203 FEPEDDAIFLSNQGRRISPRNVQKRFAEWGVKQGVNSHIHPHKLRHSFATHMLESSGDLR 262 Query: 306 ELMATYGWKTVDQAETYTK 324 + G + + YT Sbjct: 263 AVQELLGHANLTTTQIYTH 281 >gi|330685662|gb|EGG97303.1| tyrosine recombinase XerC [Staphylococcus epidermidis VCU121] Length = 297 Score = 117 bits (294), Expect = 2e-24, Method: Composition-based stats. Identities = 39/265 (14%), Positives = 102/265 (38%), Gaps = 20/265 (7%) Query: 85 GSLAVNSRISFESYF----DQIIRKSGDF-DYRKITTKHIRSGVESRKHTPSSAIQFLTS 139 + + ++ S+ D + ++S D D+ ++ S + S+ ++ + +++ Sbjct: 16 RNFSDHTLKSYRDDIVQFNDFLYQESLDLNDFEYKDARNYLSFLYSKNLKRTTVSRKIST 75 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF----KSFWSEGSQPRLA 195 +R +++ + Q+ +NP + + PK++ + + +E+M+ ++ +G + ++ Sbjct: 76 LRTFYEYWMTQDESVVNPFVQLVHPKKEQYLPQFFYEEEMEALFKTVETDSKKGMRDKVI 135 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE--------LPDGFMKLLA 246 E L +G+R S+ Q L + +K K + + + Sbjct: 136 LELLYATGIRVSELVHIKTQDLDMKLPGVKVLGKGNKERFIPFGEFCKQSIERYLKEFKP 195 Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKA-GV-NKSAHGVRKFSATISADAGATA 304 + + + +N Q + + GV N H +R AT + GA Sbjct: 196 LKHVDHDYLIVNMQGQPITERGVRYVLNDVVKRTSGVTNIHPHKLRHTFATHLLNQGADL 255 Query: 305 HELMATYGWKTVDQAETYTKGADRI 329 + + G + YT +++ Sbjct: 256 RTVQSLLGHVNLSTTGKYTHVSNQQ 280 >gi|329963595|ref|ZP_08301073.1| integron integrase [Bacteroides fluxus YIT 12057] gi|328528500|gb|EGF55473.1| integron integrase [Bacteroides fluxus YIT 12057] Length = 372 Score = 117 bits (294), Expect = 2e-24, Method: Composition-based stats. Identities = 63/362 (17%), Positives = 111/362 (30%), Gaps = 54/362 (14%) Query: 3 PSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHES-------------------TF 43 P ++L P R+G+ G+ IRL E F Sbjct: 8 PKIKLSP-----VVRNGREFVEVTFGNDNDIRLSLSKEENVLLVGGRAYLPAEDFVLAEF 62 Query: 44 IPAY-------MSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFE 96 Y SA+ + P++E P Y + + ++ + Sbjct: 63 FDRYVKMAFIDYSAIKETAPRKEEDKRPPLPEG--------YLEKLQQVRYSDHTVRVYT 114 Query: 97 SYFDQIIRKSGDFDYRKITTKHIRSG----VESRKHTPSSAIQFLTSMRVLFKWAVRQEY 152 SYF + +T I + + + Q + +++ ++ + QE Sbjct: 115 SYFRDFQQHFEGRKIETVTPGEINDYLLYLIHEKNISSCQQNQRINAIKFYYEKVLGQER 174 Query: 153 VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRA 212 C V R KR+ +KE++++ + F L +GLR S+ Sbjct: 175 R----CYKVNRAKREKTLPDVLSKEEIKKILDATVTDLRFFCMFSILYSAGLRISELLEL 230 Query: 213 GVQHLQNNI--FSIKTQKTGTIITVELPDGFMKLL---AMTPIGKETFFINNDKQKMNAT 267 + + ++ K L MK L K F + + + Sbjct: 231 KPGDINESRSLIRVRQGKGKKDRYTLLSKPLMKKLTEYNRLYKPKVWLFEHRPGEPFTES 290 Query: 268 QFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 S KA A +AG+ K H +R AT + G + G + E Y Sbjct: 291 IVSKRLKAAAREAGITKRIYPHLLRHSFATHLLEQGTDIKIVKELMGHNNIKTTERYVHI 350 Query: 326 AD 327 AD Sbjct: 351 AD 352 >gi|295426272|ref|ZP_06818932.1| tyrosine recombinase XerC [Lactobacillus amylolyticus DSM 11664] gi|295064011|gb|EFG54959.1| tyrosine recombinase XerC [Lactobacillus amylolyticus DSM 11664] Length = 307 Score = 117 bits (294), Expect = 2e-24, Method: Composition-based stats. Identities = 48/278 (17%), Positives = 109/278 (39%), Gaps = 29/278 (10%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQ----IIRKSGDFDYRKITTKHIR---SGVES 125 L Y K+ + N+ +S+++ + G D+ KI T+ I + Sbjct: 8 ALFISYLKNER--QYSKNTILSYQTDLLEAKSFWRENGGFVDWDKIQTRDIEVYLQSMAE 65 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 RK + +S ++ ++S+R +++ +++ + ++P ++ + + + + +M+Q S Sbjct: 66 RKLSRNSQMRKMSSLRSFYRFLAKRKLIKVDPTQTIVLRTEERKLPQFFYAPEMKQVISS 125 Query: 186 WSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-------------K 228 + + FE +G+R S+ + + ++ I K Sbjct: 126 LQGNTALTERNLALFELFYTTGMRVSEVSSLKINQVDFDLQMILVHGKGNKDRYVAFDDK 185 Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--A 286 T + + L + KLL + ++ F+NN Q + + KAG++ Sbjct: 186 TKSALQNYLENARPKLL-GSKADQDFIFLNNQGQPLTDRGIEYIMQRTFNKAGISGKVHP 244 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R AT + GA + G + + + YT Sbjct: 245 HELRHTFATAMLNNGADLRTVQELLGHENLSTTQIYTH 282 >gi|319892267|ref|YP_004149142.1| Site-specific tyrosine recombinase [Staphylococcus pseudintermedius HKU10-03] gi|317161963|gb|ADV05506.1| Site-specific tyrosine recombinase [Staphylococcus pseudintermedius HKU10-03] Length = 303 Score = 117 bits (294), Expect = 2e-24, Method: Composition-based stats. Identities = 35/262 (13%), Positives = 88/262 (33%), Gaps = 20/262 (7%) Query: 88 AVNSRISFESYFDQI-----IRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRV 142 + ++ ++ Q + ++ I ++ + ++ + ++++R Sbjct: 26 SDHTLKAYHDDLVQFNRFLAQEQLSLTAFKYIDARNYLQTLYDLGLQRTTVSRKISTLRS 85 Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAFEF 198 + + + Q++ +NP + + PK++ + E+M+ +G + R+ E Sbjct: 86 FYAFWMTQDHEIVNPFVQLVHPKKERYLPTFFYTEEMEALFQTVMQDAHKGLRDRVILEL 145 Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE--------LPDGFMKLLAMTP 249 +G+R S+ + + + IK K G V + + + Sbjct: 146 FYATGIRVSELVSLKTEDVDLEMCWIKVLGKGGKERIVPFGEFCRQSIEQYLAEFAPIQN 205 Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATK-AGVN-KSAHGVRKFSATISADAGATAHEL 307 + N Q + + AGV H +R AT + GA + Sbjct: 206 VQHPYLITNLKGQPITERGVRYVLNDIVKRTAGVTSIHPHKLRHTFATHLLNEGADLRTV 265 Query: 308 MATYGWKTVDQAETYTKGADRI 329 + G + YT ++ Sbjct: 266 QSLLGHVNLSTTGRYTHVTNQQ 287 >gi|313669090|ref|YP_004049374.1| integrase/recombinase [Neisseria lactamica ST-640] gi|313006552|emb|CBN88016.1| putative integrase/recombinase [Neisseria lactamica 020-06] Length = 302 Score = 117 bits (294), Expect = 2e-24, Method: Composition-based stats. Identities = 37/278 (13%), Positives = 86/278 (30%), Gaps = 21/278 (7%) Query: 68 PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD----YRKITTKHIRSGV 123 P Y ++ + ++ ++ ++++ + + ++ + + + Sbjct: 3 PDGFAAHFDAYLENIVREGKSEHTVAAYRRDLEELLAQMPSEAEGGVPQDLSRRDFTAAL 62 Query: 124 ES---RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 R + + L+S R W V++ + +P + PK+ + +E + Sbjct: 63 RRLSQRGLNARTLARKLSSWRQYCAWLVKRGLMRADPTAGISPPKQPQRIPKALPQEWLN 122 Query: 181 QFKSF-----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIIT 234 + + FE + SGLR S+ + + + G Sbjct: 123 RMLDLPVDGGDPLAVRDHALFELMYGSGLRVSEIHGLNADDVYLDEAWVHVTGKGRKQRQ 182 Query: 235 VELPDGFMKL------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK--AGVNKSA 286 V L + L T + F + +++ Q A G + S Sbjct: 183 VPLTGKSAEALKNYLPLRQTASDGKALFTGRNGTRLSQRQIQKRLAQWAAINGDGRHVSP 242 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R A A + G ++ + YTK Sbjct: 243 HMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTK 280 >gi|315644277|ref|ZP_07897447.1| hypothetical protein PVOR_02010 [Paenibacillus vortex V453] gi|315280652|gb|EFU43941.1| hypothetical protein PVOR_02010 [Paenibacillus vortex V453] Length = 348 Score = 117 bits (294), Expect = 2e-24, Method: Composition-based stats. Identities = 53/325 (16%), Positives = 111/325 (34%), Gaps = 42/325 (12%) Query: 54 STPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISF----ESYFDQIIRKSGDF 109 + RE I + +L+ + K +L + + + + I + G+ Sbjct: 9 TAGAREPIANVALPSYSLQEAVEFVVKIKRANNLKERTISGYIQNMNYFIEWITERYGEI 68 Query: 110 DYRKITTKHIRSGV---------------------ESRKHTPSSAIQFLTSMRVLFKWAV 148 R++T +R V +P+S + + F Sbjct: 69 TIREVTADLLREYVLWCATDKEYYAGHPFKAEYEKGKLGLSPASVNVRIRVFKTFFAVLH 128 Query: 149 RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGL 204 +E + NP ++V ++ + I P + E++++F + + + +L +GL Sbjct: 129 EEEVIDRNPAVNVSLLRQDIDTIMPLSDEELRRFMKSPDQRQWAQWRDYVIMTLILDTGL 188 Query: 205 RCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELP------DGFMKLLAMTPIGKET-- 254 R + C + ++ K + LP +L+A T +T Sbjct: 189 RLGEICALEKMEIDFVKKSITLPASKNKNRKSRMLPLSTETARLLKQLIAETERNFDTTY 248 Query: 255 FFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYG 312 F N ++++ F A KA + + S H +R AT++A+ G + L G Sbjct: 249 VFTTNYGEQLSEKTIQKSFDKYAEKAKLGRNVSPHVLRHNFATMAAENGMSVFHLQKLMG 308 Query: 313 WKTVDQAETYTKGADRIRLGIKNSR 337 + Y L ++ R Sbjct: 309 HADIATTRKYV-QISEGSLAEEHKR 332 >gi|329910273|ref|ZP_08275268.1| site-specific recombinase, phage integrase family [Oxalobacteraceae bacterium IMCC9480] gi|327546222|gb|EGF31261.1| site-specific recombinase, phage integrase family [Oxalobacteraceae bacterium IMCC9480] Length = 356 Score = 117 bits (294), Expect = 2e-24, Method: Composition-based stats. Identities = 58/316 (18%), Positives = 107/316 (33%), Gaps = 26/316 (8%) Query: 32 RIRLPYPHESTF---IPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLA 88 R+R P +TF A A + + K T++ L+ Y KSA +L Sbjct: 22 RLRGQAPETATFERLTDAKEWAKKTEADMKAGRHFGISKRHTVEELLDRYEKSA-LPALK 80 Query: 89 VNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP----------SSAIQFLT 138 S ++ D + G +T I + TP + + L Sbjct: 81 SA--ESVKAKLDFWRERHGKNLLSDMTPDVIAKARDKLASTPKQRGGGIRSAADVNRTLA 138 Query: 139 SMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW--SEGSQPRLA 195 ++ +AV++ ++ NP V + +R + +++ F S S LA Sbjct: 139 ALSSACGFAVKELGWLERNPMERVRKGAEAKGRVRFLSSDELPLFLKACRDSANSHLYLA 198 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFS--IKTQKTGTIITVELPDGFMKLLAMTPI--- 250 L +G R S+ + + + + K G + L + LL + Sbjct: 199 VVLALTTGGRKSEVMSLRWRQIDMKRRTAMLGDTKNGDARALPLSGEALALLQASATVRA 258 Query: 251 -GKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELM 308 + F + K F AG+ + H +R +A+ A AG + E+ Sbjct: 259 LDDDRLFPPKPRGKSEFMDLRAPFDGALKVAGITDFHWHDLRHTAASYLAMAGTSPLEIA 318 Query: 309 ATYGWKTVDQAETYTK 324 G +T+ Y+ Sbjct: 319 KVLGHRTMAMVARYSH 334 >gi|148978770|ref|ZP_01815150.1| site-specific tyrosine recombinase XerC [Vibrionales bacterium SWAT-3] gi|145962191|gb|EDK27475.1| site-specific tyrosine recombinase XerC [Vibrionales bacterium SWAT-3] Length = 310 Score = 117 bits (294), Expect = 2e-24, Method: Composition-based stats. Identities = 39/268 (14%), Positives = 94/268 (35%), Gaps = 22/268 (8%) Query: 77 EYRKSAHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGV---ESRKHTP 130 EY +S L+++++ +++ + + G D+R++ +R Sbjct: 22 EYLRSE--KGLSLHTQRNYKQQLETMAEHLVTLGLKDWRQVDAAWVRQLASKGMRDGMKA 79 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---WS 187 SS L+S+R F + V + + NP V P+++ + +++ Q Sbjct: 80 SSIATRLSSLRSFFDFLVLRGEITANPAKGVSAPRKQRPLPKNLDVDEVGQLLDVNEDDP 139 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------ELP 238 + R E + +GLR ++ ++ + + I+ G + Sbjct: 140 LSIRDRAMMEVMYGAGLRLAELVGINLKDVLSRQGEIRVIGKGDKERKAPFSGLAKEWVD 199 Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATI 296 + G++ F++ +++ + K V + S H +R AT Sbjct: 200 KWLRVRGELASPGEDALFVSKLGTRISHRSVQKRMEEWGKKQSVASHISPHKLRHSFATH 259 Query: 297 SADAGATAHELMATYGWKTVDQAETYTK 324 ++ + G + + + YT Sbjct: 260 VLESSQNLRTVQELLGHENISTTQVYTH 287 >gi|89074452|ref|ZP_01160929.1| tyrosine recombinase [Photobacterium sp. SKA34] gi|89049740|gb|EAR55290.1| tyrosine recombinase [Photobacterium sp. SKA34] Length = 302 Score = 117 bits (294), Expect = 2e-24, Method: Composition-based stats. Identities = 38/268 (14%), Positives = 87/268 (32%), Gaps = 22/268 (8%) Query: 77 EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV------ESRKHTP 130 EY +S L+++++ +++ +I + + Sbjct: 15 EYLRSER--ELSLHTQQNYKRQLTRIAEQLVELSVDNWQQVDAGWVRQIASKGMRDGLKA 72 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---WS 187 SS L+++R F + V Q + NP V P++ + ++M Q Sbjct: 73 SSLAMRLSALRSFFDFLVHQNVLKANPAKGVAAPRKARPLPKNLDVDEMNQLLDVNDDDP 132 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLA 246 + R E + +GLR ++ V+H+ + ++ K V + +A Sbjct: 133 LAIRDRAMMELMYGAGLRLAELVGIDVRHISLSKGDLRVIGKGDKERVVPFSGLAREWVA 192 Query: 247 --------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATI 296 + + F++ +++ K V + + H +R AT Sbjct: 193 KWLKLRDNIALAEEPALFVSKLGTRISTRNVQKRMAEWGQKQAVSSHINPHKLRHSFATH 252 Query: 297 SADAGATAHELMATYGWKTVDQAETYTK 324 ++ + G + + YT Sbjct: 253 MLESSGDLRAVQELLGHANLSTTQIYTH 280 >gi|289578357|ref|YP_003476984.1| integrase [Thermoanaerobacter italicus Ab9] gi|297544634|ref|YP_003676936.1| integrase family protein [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|289528070|gb|ADD02422.1| integrase family protein [Thermoanaerobacter italicus Ab9] gi|296842409|gb|ADH60925.1| integrase family protein [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 328 Score = 117 bits (294), Expect = 2e-24, Method: Composition-based stats. Identities = 46/251 (18%), Positives = 87/251 (34%), Gaps = 25/251 (9%) Query: 99 FDQIIRKSGDFDYRKITTKHIRSGV-------ESRKHTPSSAIQFLTSMRVLFKWAVRQ- 150 FD+I D D I + + R +TP + + + S+R + + ++ Sbjct: 65 FDEI--DISDVDVDLIESVDLNDLYAYLNFVTNERSNTPPARARKVASLRSFYDYLYKKA 122 Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR--LAFEFLLYSGLRCSD 208 + + NP +E PK T ++ ++ + R L GLR S+ Sbjct: 123 KVINKNPTQELESPKLSVRQPIYLTLDESKKLLDSIDGPFKERDYAIITLFLNCGLRVSE 182 Query: 209 SCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPI--------GKETFFINND 260 + ++++ ++ K TV L D + + K+ F++ Sbjct: 183 LVNINIDDIKDDKLTVI-GKGNKQRTVYLNDACINAINAYLRVRPKEGVKDKKALFLSKR 241 Query: 261 KQKMNATQFSIWFKAKATKA---GVNKSAHGVRKFSATISADAG-ATAHELMATYGWKTV 316 ++++ K A G SAH +R +AT+ G L G V Sbjct: 242 LKRISVKTVQYTVKKHLKNANLGGKKYSAHKLRHTAATLMYRYGNVDIRTLQKLLGHSNV 301 Query: 317 DQAETYTKGAD 327 + YT D Sbjct: 302 STTQIYTHVDD 312 >gi|229520080|ref|ZP_04409508.1| tyrosine recombinase XerC [Vibrio cholerae TM 11079-80] gi|229342868|gb|EEO07858.1| tyrosine recombinase XerC [Vibrio cholerae TM 11079-80] Length = 311 Score = 117 bits (294), Expect = 2e-24, Method: Composition-based stats. Identities = 38/278 (13%), Positives = 94/278 (33%), Gaps = 21/278 (7%) Query: 68 PTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIR---KSGDFDYRKITTKHIRSGV 123 P L + + H L++ ++ +++ + + + + G + ++ + +R V Sbjct: 10 PDALAQPLERFYAYLHTEKGLSLYTQRNYKQQLETMTQYLVQVGLTHWTQLDSAWVRQLV 69 Query: 124 ESRKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 K SS L+S+R + + + + NP V P+++ + ++M Sbjct: 70 MQGKRQGMKASSIATRLSSLRSFLDFLILRGELEANPAKGVSAPRKQRTLPKNLDVDEMA 129 Query: 181 QFKSFW---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI---IT 234 Q + R E + +GLR ++ V+ + + I+ G + Sbjct: 130 QLLEVTDDDPLSIRDRAIMELMYGAGLRLAELVSIDVKDVNLSEGEIRVIGKGNKERKVW 189 Query: 235 V------ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSA 286 + + + F++ +++ K V + S Sbjct: 190 FAGQAQEWVGKWLKLRSQLADSAETALFVSKLGTRISHRSVQKRMAEWGQKQAVASHISP 249 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R AT ++ + G + + + YT Sbjct: 250 HKLRHSFATHMLESSNNLRAVQELLGHENIATTQIYTH 287 >gi|209560015|ref|YP_002286487.1| Prophage NZ131.3 probable integrase [Streptococcus phage NZ131.3] gi|209541216|gb|ACI61792.1| Prophage NZ131.3 probable integrase [Streptococcus phage NZ131.3] Length = 378 Score = 117 bits (294), Expect = 2e-24, Method: Composition-based stats. Identities = 69/375 (18%), Positives = 134/375 (35%), Gaps = 48/375 (12%) Query: 14 ERTRHGKII---YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY-INSPRKKPT 69 E+ +G I YY G+R R + + A EY I S + Sbjct: 4 EKQANGNIKFIEYYKDPYTGKRQRAYVTLDRYTKQSETKARRLLNEIIEYRIKSSGDQFV 63 Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD-FDYRKITTKHIRSGVESRKH 128 L+ E++ S ++ + + ++I GD + I + ++ ++ K Sbjct: 64 RFGQLVEEWKTSHS-KTVKARTMKVYRHPIEKIKDFIGDDVLVKNIDARLLQKFIDYLKD 122 Query: 129 T--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE-----GIRPWTKED--- 178 ++ + ++ +AVR EY+ NP +V PKRK R E Sbjct: 123 RYSDNTINLIKQPLNMMLDYAVRMEYIMSNPMKNVVTPKRKKMSKKQLEDRYLETEQNQK 182 Query: 179 -MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-------- 229 ++Q ++ G+ E + +G+R + H+ IK + T Sbjct: 183 IIEQLRN-PIYGNHIANFSEIIFLTGMRPGELLALRWDHIDFEKLKIKIEYTLDYTTNGH 241 Query: 230 -----------GTIITVELPDGFMKLL-------AMTPIGKETFFINNDKQKMNATQFSI 271 G+ T+++P +LL + + FI N + ++ + Sbjct: 242 ANAELGSVKNDGSYRTIDIPLRVKELLVEELNYQNTNDLRSDFVFITNKGKHLSINTINR 301 Query: 272 WFKAKATKA-GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRI 329 K + K G+ ++H R T+ A+ G +M G V+ + YT D Sbjct: 302 RIKKTSEKLYGIVITSHSFRHAHITLLAELGIPLKSIMDRVGHTDVNTTIKVYTHATD-- 359 Query: 330 RLGIKNSRRISSVVD 344 ++G + +I+ V Sbjct: 360 KIGKQMMDKINKFVP 374 >gi|15800482|ref|NP_286494.1| putative integrase encoded by prophage CP-933K; partial [Escherichia coli O157:H7 EDL933] gi|12513708|gb|AAG55102.1|AE005255_3 putative integrase encoded by prophage CP-933K; partial [Escherichia coli O157:H7 str. EDL933] Length = 287 Score = 117 bits (294), Expect = 2e-24, Method: Composition-based stats. Identities = 51/279 (18%), Positives = 99/279 (35%), Gaps = 26/279 (9%) Query: 71 LKWLISEYRKSAHWGSLAVNSRI---SFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK 127 + LI+ + S +SR ++ S I R D ITTK I + + Sbjct: 8 IHGLIATKKSSPA----EESSRRHFINYMSKIKAIRRGLPDAPLEDITTKEIAAMLNGYI 63 Query: 128 H--TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 +SA +++ F+ A+ + ++ NP + K + R E ++ +++ Sbjct: 64 DEGKAASAKLIRSTLSDAFREAIAEGHITTNPVAATRAAKSEVRRSRLTADEYLKIYQAA 123 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE--------- 236 S RLA E + +G R D C + + ++ KTG I + Sbjct: 124 ESSPCWLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAIPTTLHVDALG 183 Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-----NKSAHGVRK 291 + +G ET + ++ +++ S +F +G+ + H +R Sbjct: 184 ISMKETLDKCKEILGGETIIASTRREPLSSGTVSRYFMRARKASGLSFEGDPPTFHELR- 242 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 + + + G K+ A Y DR R Sbjct: 243 SLSARLYEKQISDKFAQHLLGHKSDTMASQY--RDDRGR 279 >gi|315604216|ref|ZP_07879282.1| tyrosine recombinase XerD [Actinomyces sp. oral taxon 180 str. F0310] gi|315313922|gb|EFU61973.1| tyrosine recombinase XerD [Actinomyces sp. oral taxon 180 str. F0310] Length = 316 Score = 117 bits (294), Expect = 2e-24, Method: Composition-based stats. Identities = 41/264 (15%), Positives = 87/264 (32%), Gaps = 21/264 (7%) Query: 82 AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMR 141 +++ A ES + D + V R PSS + ++R Sbjct: 27 SNYLRDASRYVRDMESRGRATLTDVSAHDVEEHLAGLASGQVSGRPAAPSSVARACAAIR 86 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-----SEGSQPRLAF 196 L ++A+ + + ++ + P++ + + + +++ + G + Sbjct: 87 GLHRYALAEGVLNVDVTAQLRAPRQGSHLPKALSVDEVGRLLDAAHADDTPIGLRDAALL 146 Query: 197 EFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKT--QKTGTIITVELPD-----------GFM 242 E L +G R S++ L + + K V + Sbjct: 147 ELLYATGARVSEAVALSADDLDLDGQVPVVRLFGKGRKERIVPVGSFAIEALDAYRVRAR 206 Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300 +LA G F+N+ ++ + A A + S H +R AT + Sbjct: 207 PVLAARGSGSTALFLNSRGSALSRQSAWTAIRRAAQAANLAHRVSPHTLRHSFATHLLEG 266 Query: 301 GATAHELMATYGWKTVDQAETYTK 324 GA+ E+ G +V + YT+ Sbjct: 267 GASVREVQELLGHASVATTQIYTR 290 >gi|291515144|emb|CBK64354.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301] Length = 372 Score = 117 bits (294), Expect = 2e-24, Method: Composition-based stats. Identities = 54/318 (16%), Positives = 99/318 (31%), Gaps = 30/318 (9%) Query: 28 GHGRRIRLPYPHESTFIPAY-------MSALTGSTPKREYINSPRKKPTTLKWLISEYRK 80 G + + F Y SA+ + P++E P Y + Sbjct: 47 GGRAYLPAEDFVLAEFFDRYVKMAFIDYSAIKETAPRKEEDKRPPLPEG--------YLE 98 Query: 81 SAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG----VESRKHTPSSAIQF 136 + ++ + SYF + +T I + + + Q Sbjct: 99 KLQQVRYSDHTVRVYTSYFRDFQQHFEGRKIETVTPGEINDYLLYLIHEKNISSCQQNQR 158 Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF 196 + +++ ++ + QE C V R KR+ +KE++++ + F Sbjct: 159 INAIKFYYEKVLGQERR----CYKVNRAKREKTLPDVLSKEEIKKILDVTVTDLRFFCMF 214 Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTIITVELPDGFMKLL---AMTPIG 251 L +GLR S+ + + ++ K L MK L Sbjct: 215 SILYSAGLRISELLELKPGDINESRSLIRVRQGKGKKDRYTLLSRPLMKKLTEYNRLYKP 274 Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMA 309 K F + + + S KA A +AG+ K H +R AT + G + Sbjct: 275 KVWLFEHRPGEPFTESIVSKRLKAAAREAGITKRIYPHLLRHSFATHLLEQGTDIKIVKE 334 Query: 310 TYGWKTVDQAETYTKGAD 327 G + E Y AD Sbjct: 335 LMGHNNIKTTERYVHIAD 352 >gi|229815095|ref|ZP_04445432.1| hypothetical protein COLINT_02137 [Collinsella intestinalis DSM 13280] gi|229809325|gb|EEP45090.1| hypothetical protein COLINT_02137 [Collinsella intestinalis DSM 13280] Length = 333 Score = 117 bits (294), Expect = 2e-24, Method: Composition-based stats. Identities = 47/273 (17%), Positives = 93/273 (34%), Gaps = 27/273 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE----SRKHTPSSA--IQFLT 138 +LA N+ ++E + G+ R+ R + R + A + L+ Sbjct: 51 RNLAANTIAAYERDLRAYLAFLGERGTRRPDDVIRRDVEDFVAAKRADHAADASVNRALS 110 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS----FWSEGSQPRL 194 +++ ++ VR+ ++NP ++ PK + E ++ + G + R Sbjct: 111 AVKGFHRFMVREGLSSVNPTATLRVPKMGDHLPDVISIEAAERLLDQDFPATAAGMRDRA 170 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-IITVELPDGFMKLL-------- 245 E L GLR S+ C V + + ++ G+ V L ++L Sbjct: 171 VLEVLYGCGLRASELCGLDVNEVYLDEGFVRVMGKGSKERLVPLVGTARRVLGTYLAEAR 230 Query: 246 ------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISA 298 + F+N +++ + G++ H +R AT Sbjct: 231 SELFSHTRSASASAAVFLNMRGTRLSRQSVHAICERYGRMVGIDGLHPHTLRHSFATHML 290 Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 GA L G + + YT DR +L Sbjct: 291 AGGADLRALQEILGHADIATTQIYTH-IDRTQL 322 >gi|170730010|ref|YP_001775443.1| site-specific tyrosine recombinase XerC [Xylella fastidiosa M12] gi|167964803|gb|ACA11813.1| site-specific recombinase [Xylella fastidiosa M12] Length = 277 Score = 117 bits (294), Expect = 2e-24, Method: Composition-based stats. Identities = 42/255 (16%), Positives = 84/255 (32%), Gaps = 17/255 (6%) Query: 87 LAVNSRISFESYFDQIIR------KSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSM 140 ++ ++ ++ +I + + S R +P S + L++ Sbjct: 1 MSAHTLDAYRRDIGALIAWGGQQVVGDVVVLDRAQLQAFVSAEHRRGLSPKSLQRRLSAC 60 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---WSEGSQPRLAFE 197 R + W V+ ++A+NP + PK + R ++ F G + R E Sbjct: 61 RGFYAWLVKSGHIAVNPAAGLRAPKALRKLPRILDADEAVSFVQIPTDTPLGLRDRALLE 120 Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-----ELPDGFMKLLAMTPIGK 252 SGLR S+ C L + + G+ V + A + G Sbjct: 121 LFYSSGLRLSELCGLRWDGLDLDAGLVSVLGKGSRQRVVPVGSYALSALREWCASSGGGA 180 Query: 253 -ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMA 309 + F ++A + K A + G+ K H +R A+ ++ + Sbjct: 181 QQPVFPGRYGGPISARAVQVRIKQLAQRQGMAKHVHPHMLRHSFASHLLESSGDLRGVQE 240 Query: 310 TYGWKTVDQAETYTK 324 G + + YT Sbjct: 241 LLGHADITTTQIYTH 255 >gi|153830013|ref|ZP_01982680.1| tyrosine recombinase XerC [Vibrio cholerae 623-39] gi|148874498|gb|EDL72633.1| tyrosine recombinase XerC [Vibrio cholerae 623-39] Length = 311 Score = 117 bits (294), Expect = 2e-24, Method: Composition-based stats. Identities = 38/278 (13%), Positives = 94/278 (33%), Gaps = 21/278 (7%) Query: 68 PTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIR---KSGDFDYRKITTKHIRSGV 123 P L + + H L++ ++ +++ + + + + G + ++ + +R V Sbjct: 10 PDALAQPLERFYAYLHTEKGLSLYTQRNYKQQLETMTQYLVQVGLTHWSQLDSAWVRQLV 69 Query: 124 ESRKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 K SS L+S+R + + + + NP V P+++ + ++M Sbjct: 70 MQGKRQGMKASSIATRLSSLRSFLDFLILRGELEANPAKGVSAPRKQRTLPKNLDVDEMA 129 Query: 181 QFKSFW---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI---IT 234 Q + R E + +GLR ++ V+ + + I+ G + Sbjct: 130 QLLEVTDDDPLSIRDRAIMELMYGAGLRLAELVSIDVKDVNLSEGEIRVIGKGNKERKVW 189 Query: 235 V------ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSA 286 + + + F++ +++ K V + S Sbjct: 190 FAGQAQEWVGKWLKLRSQLADSAETALFVSKLGTRISHRSVQKRMAEWGQKQAVASHISP 249 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R AT ++ + G + + + YT Sbjct: 250 HKLRHSFATHMLESSNNLRAVQELLGHENIATTQIYTH 287 >gi|71274748|ref|ZP_00651036.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella fastidiosa Dixon] gi|71901196|ref|ZP_00683299.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella fastidiosa Ann-1] gi|71164480|gb|EAO14194.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella fastidiosa Dixon] gi|71729040|gb|EAO31168.1| Phage integrase:Phage integrase, N-terminal SAM-like [Xylella fastidiosa Ann-1] Length = 277 Score = 117 bits (294), Expect = 2e-24, Method: Composition-based stats. Identities = 42/255 (16%), Positives = 84/255 (32%), Gaps = 17/255 (6%) Query: 87 LAVNSRISFESYFDQIIR------KSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSM 140 ++ ++ ++ +I + + S R +P S + L++ Sbjct: 1 MSAHTLDAYRRDIGALIAWGGQQVVGEVVVLDRAQLQAFVSAEHRRGLSPKSLQRRLSAC 60 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---WSEGSQPRLAFE 197 R + W V+ ++A+NP + PK + R ++ F G + R E Sbjct: 61 RGFYAWLVKSGHIAVNPAAGLRAPKALRKLPRILDADEAVSFVQIPTDTPLGLRDRALLE 120 Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-----ELPDGFMKLLAMTPIGK 252 SGLR S+ C L + + G+ V + A + G Sbjct: 121 LFYSSGLRLSELCGLRWDGLDLDAGLVSVLGKGSRQRVVPVGSYALSALREWCASSGGGA 180 Query: 253 -ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMA 309 + F ++A + K A + G+ K H +R A+ ++ + Sbjct: 181 QQPVFPGRYGGPISARAVQVRIKQLAQRQGMAKHVHPHMLRHSFASHLLESSGDLRGVQE 240 Query: 310 TYGWKTVDQAETYTK 324 G + + YT Sbjct: 241 LLGHADITTTQIYTH 255 >gi|39995600|ref|NP_951551.1| PfpI family intracellular peptidase [Geobacter sulfurreducens PCA] gi|39982363|gb|AAR33824.1| site-specific recombinase, phage integrase family [Geobacter sulfurreducens PCA] gi|298504620|gb|ADI83343.1| site-specific recombinase, XerC [Geobacter sulfurreducens KN400] Length = 294 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 52/266 (19%), Positives = 93/266 (34%), Gaps = 23/266 (8%) Query: 85 GSLAVNSRISFESYFDQIIR--------KSGDFDYRKITTKHIRSGVESRKHTPSSAIQF 136 +++ ++R ++ES Q +G + + + + + H SS + Sbjct: 16 RAVSPHTRAAYESDLAQFRDFVRGELGAGAGAAAISHLLVRRWLAQLH-QSHARSSIGRK 74 Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG----SQP 192 L ++R F + VR + NP V PKR+ + +++ E + Sbjct: 75 LAAVRAFFTYLVRTGALPRNPAELVSTPKREKKVPFHLNIDEVTALVESPREPGVLSLRD 134 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPD----GFMKLLAM 247 R E L G+R S+ V + +++ K G V + LA Sbjct: 135 RAILETLYSCGVRVSELTGLNVGGIDLADGTVRVLGKGGKERVVPIGSHARLALSSYLAA 194 Query: 248 T--PIGKETFFINNDKQKMNATQFSIWF-KAKATKAGVNK-SAHGVRKFSATISADAGAT 303 P + F N ++ A K A + K S H +R AT + GA Sbjct: 195 RNHPPLEVPLFTNARGGRLTARSVRRVVDKHILKVAAMRKISPHTLRHTFATHLLEGGAD 254 Query: 304 AHELMATYGWKTVDQAETYTK-GADR 328 + G ++ + YT G DR Sbjct: 255 LRAIQELLGHASLSTTQKYTHVGIDR 280 >gi|78189085|ref|YP_379423.1| tyrosine recombinase XerD [Chlorobium chlorochromatii CaD3] gi|78171284|gb|ABB28380.1| Tyrosine recombinase XerD [Chlorobium chlorochromatii CaD3] Length = 304 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 40/265 (15%), Positives = 92/265 (34%), Gaps = 25/265 (9%) Query: 85 GSLAVNSRISFESYFDQ--IIRKSGDFDYRKITTK---HIRSGVESRKHTPSSAIQFLTS 139 + + N+R S+ + + + + +IT+K + + + +S + +++ Sbjct: 23 RNFSANTRSSYHNDLHRYLLFVQEQATPIAEITSKVIDRFLAELVALGLETTSMARNIST 82 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQFKSFWSEGS---QP 192 +R K+ + + NP + PK+ + ++ + + Sbjct: 83 IRSFHKFLHNERLSSNNPAERLHLPKKAHYLPAVLNLSETLALLEAPSIMQPAPTYALRD 142 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAM---- 247 R E L +G+R ++ +HL ++ I+ K V + + Sbjct: 143 RAMLELLYATGVRATELISIQQEHLYSDAGFIRIFGKGSKERLVPIGASATLWVQRYQKE 202 Query: 248 ------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISAD 299 + F+N+ K++ K + AG+ KS H +R AT + Sbjct: 203 LRVQLVKAHSNDFLFLNSRGGKLSRMSLFEMVKTYSVVAGITKSISPHTLRHTFATHLIE 262 Query: 300 AGATAHELMATYGWKTVDQAETYTK 324 GA + G ++ + YT Sbjct: 263 GGADLRAVQEMLGHSSIVTTQIYTH 287 >gi|310766564|gb|ADP11514.1| site-specific tyrosine recombinase XerC [Erwinia sp. Ejp617] Length = 344 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 58/315 (18%), Positives = 112/315 (35%), Gaps = 31/315 (9%) Query: 64 PRKKPTTLKWLI---SEYRKSAHWGS--LAVNSRISFESYFDQIIRKSGDFD--YRKITT 116 P P +L L+ ++R+ +W L V + + R R + Sbjct: 24 PAHDPKSLYALLLRFVKWRRERNWSETTLKVQTHHGYRFICWAQERGIHHAADVTRPVLE 83 Query: 117 KHIRSGVESRKH-----TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171 + R + RK +P + L ++V F+W +Q + NP +E P+ + Sbjct: 84 RWQRHLWQYRKANGEPLSPRTQRTALQPLQVWFRWLAKQNLILANPAADLELPRLEKHLP 143 Query: 172 RP-WTKEDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGV--QHLQNNIFSI 224 R + E +++ + G + R E L +G+R + R I +I Sbjct: 144 RTILSVEQVEETVNLCDLTTLQGMRDRALLELLWSTGIRRGEVARLETWSADFSRKILTI 203 Query: 225 KTQKTGTIITVELPDGFMKLLA----------MTPIGKETFFINNDK-QKMNATQFSIWF 273 K + + + + L + G + F+ D + A + Sbjct: 204 VQGKGKQDRVIPVGERALWWLRHYLHEVRPEIVAVAGCKALFVAMDGVAGLTANGITHAV 263 Query: 274 KAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 AG+ K S H R AT + GA + A G ++V+ + YT+ + R Sbjct: 264 VPYLRAAGIEKGSCHLFRHAMATQMLENGADLRWIQAMLGHRSVESTQIYTQVSIRALQA 323 Query: 333 IKNSRRISSVVDSDD 347 + S + ++D+ Sbjct: 324 VHASTHPAEQTEADN 338 >gi|206971545|ref|ZP_03232495.1| DNA integration/recombination/invertion protein [Bacillus cereus AH1134] gi|206733530|gb|EDZ50702.1| DNA integration/recombination/invertion protein [Bacillus cereus AH1134] Length = 369 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 45/312 (14%), Positives = 108/312 (34%), Gaps = 38/312 (12%) Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVE 124 TLK ++ + + S+ ++ ++++ + +I G K+ HI+ + Sbjct: 60 PSKVTLKDYLNHWLEIKS-MSIQKSTFAGYKAFINQHVIPSIGMVALHKLNVMHIQKCYK 118 Query: 125 SRKHTPSSAIQFLTSMRVL---FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 + + L R+L A++Q ++ NP E PK++ I+ WT++++++ Sbjct: 119 TAIDKGITNNSILLMHRILKSALNLAIKQNILSRNPAAFAEIPKKEKTPIQTWTEDEVKK 178 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--------------NNIFSIKTQ 227 F S+ S+ + + + +G+R + Q + +N + Sbjct: 179 FL-LHSQESRYHIGYLLAITTGMRMGEVLGLRWQDVDFEKHTVTINQTSGHDNKIKKTAK 237 Query: 228 KTGTIITVELPDGFMKLLAMTPI--------------GKETFFINNDKQKMNATQFSIWF 273 + T+ +P ++ L I ++ N + + F F Sbjct: 238 TNSSKRTIPVPKETIESLKRHKILINKEKLRFGSAYLDQDLINCNEFGKIIKRAHFRKSF 297 Query: 274 KAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRL 331 K G+ + H +R AT+ G + G + Y+ + Sbjct: 298 IRMTHKVGIKEIKFHDLRHTHATLLLKQGVNPKIISERLGHTDISMTLSVYSHVL--PNM 355 Query: 332 GIKNSRRISSVV 343 + + + Sbjct: 356 QEEAVKNFGKSI 367 >gi|163803624|ref|ZP_02197489.1| tyrosine recombinase [Vibrio sp. AND4] gi|159172572|gb|EDP57432.1| tyrosine recombinase [Vibrio sp. AND4] Length = 313 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 38/268 (14%), Positives = 95/268 (35%), Gaps = 22/268 (8%) Query: 77 EYRKSAHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGV---ESRKHTP 130 E+ +S L+++++ +++ + + + G D+ ++ +R Sbjct: 22 EFLRSE--KGLSLHTQRNYKQQLETMAQHLVEMGLKDWSQVDASWVRQLAGKGMREGMKA 79 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---WS 187 SS L+S+R F + + + ++ NP V P++K + +++ Q + Sbjct: 80 SSVATRLSSLRSFFDFLILRGEMSANPAKGVSAPRKKRPLPKNLDVDEVSQLLEVNEGDA 139 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE--------LP 238 + R E + +GLR ++ ++ +Q ++ K V + Sbjct: 140 LAVRDRAMMELMYGAGLRLAELVSVDMRDIQLRSGELRVIGKGDKERKVPFSGMATEWVG 199 Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATI 296 + G+ F++ +++ K V + S H +R AT Sbjct: 200 KWLRVRGDIAAPGEPALFVSKLGTRISHRSVQKRMAQWGQKQSVASHISPHKLRHSFATH 259 Query: 297 SADAGATAHELMATYGWKTVDQAETYTK 324 ++ + G + + + YT Sbjct: 260 MLESSNNLRAVQELLGHENISTTQIYTH 287 >gi|212710173|ref|ZP_03318301.1| hypothetical protein PROVALCAL_01227 [Providencia alcalifaciens DSM 30120] gi|212687172|gb|EEB46700.1| hypothetical protein PROVALCAL_01227 [Providencia alcalifaciens DSM 30120] Length = 309 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 41/260 (15%), Positives = 86/260 (33%), Gaps = 20/260 (7%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYR-----KITTKHIRSGVESRKHTPSSAIQF-LT 138 L+ + ++ + + G+ IT + R ++++ L+ Sbjct: 28 RRLSPVTITNYRRQLSVVCQILGELKVNQWQKLDITLGRSIAAKSRRTGLQAASMALRLS 87 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQPRLA 195 ++R W V+Q + NP ++ PK K + +++ Q + + R Sbjct: 88 ALRSFCDWMVQQGELPANPVKTLHAPKAKKRLPKNMDVDEISQLLNMDSGDPLVVRDRTM 147 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMKLLAMT------ 248 E + +GLR S+ V+HL ++ K + L + L Sbjct: 148 LEVMYGAGLRLSELVGLDVKHLDLDLGEVWVMGKGSKERKIPLGKTAVSWLKRWLEMREL 207 Query: 249 --PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATA 304 P+ F ++++ F+ K VN H +R AT ++ Sbjct: 208 YEPVDGAVFISTQSGKRISNRNVQKRFEQWGIKQEVNSHINPHKLRHSFATHILESSGNL 267 Query: 305 HELMATYGWKTVDQAETYTK 324 + G + + YT Sbjct: 268 RGVQELLGHANLSTTQIYTH 287 >gi|229527130|ref|ZP_04416524.1| tyrosine recombinase XerC [Vibrio cholerae 12129(1)] gi|229335361|gb|EEO00844.1| tyrosine recombinase XerC [Vibrio cholerae 12129(1)] Length = 311 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 38/278 (13%), Positives = 94/278 (33%), Gaps = 21/278 (7%) Query: 68 PTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIR---KSGDFDYRKITTKHIRSGV 123 P L + + H L++ ++ +++ + + + + G + ++ + +R V Sbjct: 10 PDALAQPLERFYAYLHTEKGLSLYTQRNYKQQLETMTQYLVQVGLTHWTQLDSAWVRQLV 69 Query: 124 ESRKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 K SS L+S+R + + + + NP V P+++ + ++M Sbjct: 70 MQGKRQGMKASSIATRLSSLRSFLDFLILRGELEANPAKGVSAPRKQRTLPKNLDVDEMA 129 Query: 181 QFKSFW---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI---IT 234 Q + R E + +GLR ++ V+ + + I+ G + Sbjct: 130 QLLEVTDDDPLSIRDRAIMELMYGAGLRLAELVSIDVKDVNLSEGEIRVIGKGNKERKVW 189 Query: 235 V------ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSA 286 + + + F++ +++ K V + S Sbjct: 190 FAGQAQEWVGKWLKLRSQLADSAETALFVSKLGTRISHRSVQKRMAEWGQKQAVASHISP 249 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R AT ++ + G + + + YT Sbjct: 250 HKLRHSFATHMLESSNNLRAVQELLGHENIATTQIYTH 287 >gi|183600284|ref|ZP_02961777.1| hypothetical protein PROSTU_03843 [Providencia stuartii ATCC 25827] gi|188020074|gb|EDU58114.1| hypothetical protein PROSTU_03843 [Providencia stuartii ATCC 25827] Length = 309 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 40/260 (15%), Positives = 91/260 (35%), Gaps = 20/260 (7%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRK------ITTKHIRSGVESRKHTPSSAIQFLT 138 L+ + ++ ++ + + + +++ + + +S L+ Sbjct: 28 RRLSPVTITNYRRQLTVVVEMLNEMNVSEWRQLDATKARNVAAKSRRKGLQAASMALRLS 87 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF---KSFWSEGSQPRLA 195 ++R W V+Q+ ++ NP +V PK K + +++ + +S + R Sbjct: 88 ALRSFCDWMVQQDKLSANPVTAVHAPKAKKRLPKNMDVDEVSKLLSMESGDPLVVRDRTM 147 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-IITVELPDGFMKLLAMT------ 248 E + +GLR S+ V+HL + ++ G+ + L + L Sbjct: 148 LEVMYGAGLRLSELVGLDVRHLDLAMGEVRVMGKGSKERKIPLGKTAVSWLKRWLEMREL 207 Query: 249 --PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATA 304 P F ++++ F+ K GVN H +R AT ++ Sbjct: 208 YEPEDGAVFISTKSGKRISNRNVQKRFEQWGIKQGVNSHINPHKLRHSFATHILESSGNL 267 Query: 305 HELMATYGWKTVDQAETYTK 324 + G + + YT Sbjct: 268 RGVQELLGHANLSTTQIYTH 287 >gi|311068135|ref|YP_003973058.1| site-specific tyrosine recombinase XerC [Bacillus atrophaeus 1942] gi|310868652|gb|ADP32127.1| site-specific tyrosine recombinase XerC [Bacillus atrophaeus 1942] Length = 304 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 33/219 (15%), Positives = 79/219 (36%), Gaps = 19/219 (8%) Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 + + + + ++++R +K+ +R++ V NP V PK++ + ++++++ + Sbjct: 65 EKGLSRRTISKKISALRSFYKFLMREKLVEENPFQLVHLPKQEKRIPKFLYQKELEELFA 124 Query: 185 F----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-------- 232 G + + E L +G+R S+ V + + ++ G Sbjct: 125 VSDTSLPTGQRDQALLELLYATGMRVSECSSLTVNGVDLFMDTVLVHGKGKKQRYIPFGS 184 Query: 233 -----ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG--VNKS 285 + + + G +LL + F+N + KA ++ Sbjct: 185 YAHEALELYVNSGRQRLLEKAKESHDVLFVNQRGGPLTVRGVRYILSGLVKKASGTLHIH 244 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R AT + GA + G + + YT Sbjct: 245 PHMLRHTFATHLLNEGADLRSVQELLGHSNLSSTQIYTH 283 >gi|307267401|ref|ZP_07548893.1| integrase family protein [Thermoanaerobacter wiegelii Rt8.B1] gi|306917586|gb|EFN47868.1| integrase family protein [Thermoanaerobacter wiegelii Rt8.B1] Length = 330 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 49/268 (18%), Positives = 91/268 (33%), Gaps = 25/268 (9%) Query: 99 FDQIIRKSGDFDYRKITTKHIRSGV-------ESRKHTPSSAIQFLTSMRVLFKWAVRQ- 150 FD+I D D I + + R +TP + + + S+R + + ++ Sbjct: 66 FDEI--DISDVDVDLIESVDLNDLYAYLNFVANERSNTPPARARKVASLRSFYNYLYKKA 123 Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR--LAFEFLLYSGLRCSD 208 + ++ NP +E PK T ++ ++ + + R L GLR S+ Sbjct: 124 KVLSKNPTQELESPKLSVRQPIYLTLDESKKLLNSIDGPFKERDYAIITLFLNCGLRVSE 183 Query: 209 SCRAGVQHLQNNIFSIKTQKTGTIITVELPDG--------FMKLLAMTPIGKETFFINND 260 + ++++ ++ K TV L D K+ F++ Sbjct: 184 LVNINLDDIKDDKLTVI-GKGNKQRTVYLNDACINAINTYLKVRPKEGVKDKKALFLSKR 242 Query: 261 KQKMNATQFSIWFKAKATKA---GVNKSAHGVRKFSATISADAG-ATAHELMATYGWKTV 316 ++++ K A G SAH +R +AT+ G L G V Sbjct: 243 LKRISVKTVQYTVKKHLKNANLEGKKYSAHKLRHTAATLMYRYGNVDIRTLQKLLGHSNV 302 Query: 317 DQAETYTKGADRIRLGIKNSRRISSVVD 344 + YT D N +S D Sbjct: 303 STTQIYTHVDDSQLKEAVNKNPLSQKED 330 >gi|332180702|gb|AEE16390.1| Tyrosine recombinase xerC [Treponema brennaborense DSM 12168] Length = 311 Score = 117 bits (293), Expect = 3e-24, Method: Composition-based stats. Identities = 46/256 (17%), Positives = 93/256 (36%), Gaps = 23/256 (8%) Query: 99 FDQIIRKSG----DFDYRKITTKHIRSGVESRKHTPS---SAIQFLTSMRVLFKWAVRQE 151 D + +K + ++T + + + RK + + + ++++R + V + Sbjct: 45 LDWLQKKHPAESVEQALERVTVQDLLYYLVQRKTVGADELTIAKDISALRSFGNFLVARH 104 Query: 152 YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRLAFEFLLYSGLRCS 207 + N +ERPK + R + E ++ F + G + R FE + GLR S Sbjct: 105 VWSENCACLLERPKARRALPRVLSPEQVETFLNAIDVSEPLGVRDRALFELIYSCGLRIS 164 Query: 208 DSCRAGVQHLQN-NIFSIKTQKTGTIITVELPDGFMKLLA----------MTPIGKETFF 256 ++ +Q+L + K V D ++ L+ + F Sbjct: 165 EASGLLLQNLHLKERIVLVRGKGDKERIVPFGDAALRWLSSWLSEYRPQLVGSRQIPYVF 224 Query: 257 INNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTV 316 +N ++ F+ ++GV+ H +R AT GA + G + Sbjct: 225 VNYKGMPLSRKGIWKRFQEIEVRSGVSAKVHTLRHSFATHLLAGGADLRSVQELLGHSDL 284 Query: 317 DQAETYTK-GADRIRL 331 + YT D +RL Sbjct: 285 VTTQIYTHIDDDELRL 300 >gi|325201493|gb|ADY96947.1| tyrosine recombinase XerC [Neisseria meningitidis M01-240149] gi|325207473|gb|ADZ02925.1| tyrosine recombinase XerC [Neisseria meningitidis NZ-05/33] Length = 305 Score = 117 bits (293), Expect = 3e-24, Method: Composition-based stats. Identities = 36/278 (12%), Positives = 85/278 (30%), Gaps = 24/278 (8%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD-------YRKITTKHIRSGV 123 Y ++ + ++ ++ +++ + ++ + + + Sbjct: 6 FAAHFDAYLENIVREGKSGHTVAAYRRDLEELFALLAQMPSEDAGGVPQGLSQRDFTAAL 65 Query: 124 ES---RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 R + + L+S R W V++ + +P ++ PK+ + +E + Sbjct: 66 RRLSQRGLNARTLARKLSSWRQYCAWLVKRGLLHTDPTADIKPPKQPERVPKALPQEWLN 125 Query: 181 QFKSF-----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIIT 234 + + FE + SGLR S+ + + + G Sbjct: 126 RMLDLPVDGGDPLAVRDHALFELMYGSGLRVSEIHGLNADDVYLDEAWVHVTGKGRKQRQ 185 Query: 235 VEL----PDGFMKL--LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK--AGVNKSA 286 V L + L T + F + +++ Q A + G + S Sbjct: 186 VPLVGKSVEALKNYLSLRQTASDGKALFTGRNGTRLSQRQIQKRLAQWAAQNGDGRHVSP 245 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R A A + G ++ + YTK Sbjct: 246 HMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTK 283 >gi|317477593|ref|ZP_07936813.1| phage integrase [Bacteroides eggerthii 1_2_48FAA] gi|316906241|gb|EFV27975.1| phage integrase [Bacteroides eggerthii 1_2_48FAA] Length = 348 Score = 117 bits (293), Expect = 3e-24, Method: Composition-based stats. Identities = 54/318 (16%), Positives = 99/318 (31%), Gaps = 30/318 (9%) Query: 28 GHGRRIRLPYPHESTFIPAY-------MSALTGSTPKREYINSPRKKPTTLKWLISEYRK 80 G + + F Y SA+ + P++E P Y + Sbjct: 23 GGRAYLPAEDFVLAEFFDRYVKMAFIDYSAIKETAPRKEEDKRPPLPEG--------YLE 74 Query: 81 SAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG----VESRKHTPSSAIQF 136 + ++ + SYF + +T I + + + Q Sbjct: 75 KLQQVRYSDHTVRVYTSYFRDFQQHFEGRKIETVTPGEINDYLLYLIHEKNISSCQQNQR 134 Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF 196 + +++ ++ + QE C V R KR+ +KE++++ + F Sbjct: 135 INAIKFYYEKVLGQERR----CYKVNRAKREKTLPDVLSKEEIKKILDVTVTDLRFFCMF 190 Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTIITVELPDGFMKLL---AMTPIG 251 L +GLR S+ + + ++ K L MK L Sbjct: 191 SILYSAGLRISELLELKPGDINESRSLIRVRQGKGKKDRYTLLSRPLMKKLTEYNRLYKP 250 Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMA 309 K F + + + S KA A +AG+ K H +R AT + G + Sbjct: 251 KVWLFEHRPGEPFTESIVSKRLKAAAREAGITKRIYPHLLRHSFATHLLEQGTDIKIVKE 310 Query: 310 TYGWKTVDQAETYTKGAD 327 G + E Y AD Sbjct: 311 LMGHNNIKTTERYVHIAD 328 >gi|310766557|gb|ADP11507.1| site-specific tyrosine recombinase XerC [Erwinia sp. Ejp617] Length = 345 Score = 117 bits (293), Expect = 3e-24, Method: Composition-based stats. Identities = 54/304 (17%), Positives = 106/304 (34%), Gaps = 31/304 (10%) Query: 64 PRKKPTTLKWLI---SEYRKSAHWGS--LAVNSRISFESYFDQIIRKSGDF-----DYRK 113 P P +L L+ ++R+ +W L V + + R + Sbjct: 24 PAHDPKSLYALLLRFVKWRRERNWSETTLKVQTHHGYRFICWASERGIHHAAEVTRPVLE 83 Query: 114 ITTKHIRSGVESRKH--TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171 +H+ ++ +P + L ++V F+W +Q + NP +E P+++ Sbjct: 84 SWQRHLWQYRKANGEPLSPRTQRTALQPLQVWFRWLAKQNLILANPAADLELPRQEKHLP 143 Query: 172 RP-WTKEDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGV--QHLQNNIFSI 224 R + E ++ + G + R E L +G+R + R I +I Sbjct: 144 RTILSVEQVEGIVNLCDLNTLQGMRDRALLELLWSTGIRRGEVARLETYSADFSRKILTI 203 Query: 225 KTQKTGTIITVELPDGFMKLLA-----------MTPIGKETFFINNDKQKMNATQFSIWF 273 K + + + + L ++P K F + + A + Sbjct: 204 VQGKGKQDRVIPVGERALWWLRHYLHKVRPEVLVSPDCKALFLAMDGVAGLTANGITHAV 263 Query: 274 KAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 AG+ K S H R AT + GA + A G ++V+ + YT+ + R Sbjct: 264 VPYLRAAGIEKGSCHLFRHAMATQMLENGADLRWIQAMLGHRSVESTQIYTQVSIRALQA 323 Query: 333 IKNS 336 + S Sbjct: 324 VHAS 327 >gi|82703659|ref|YP_413225.1| tyrosine recombinase XerC [Nitrosospira multiformis ATCC 25196] gi|82411724|gb|ABB75833.1| tyrosine recombinase XerC subunit [Nitrosospira multiformis ATCC 25196] Length = 318 Score = 117 bits (293), Expect = 3e-24, Method: Composition-based stats. Identities = 43/258 (16%), Positives = 91/258 (35%), Gaps = 19/258 (7%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR---SGVESRKHTPSSAIQFLTSMR 141 L+ + S+ D ++ S + HIR + + + + S + L++ R Sbjct: 39 RRLSPLTCESYGRDLDVLMNLSRGIALEHLQIHHIRRFLAQLHANGFSGRSLARMLSAWR 98 Query: 142 VLFKW-AVRQEYVAINPCLSVERPKRKTEGIRPWTKED---MQQFKSFWSEGSQPRLAFE 197 L+ + A Y NPC V PK R + ++ + +F + + + FE Sbjct: 99 GLYNYLARHHGYA-CNPCAGVRAPKSPRSLPRTLSPDEALKLLEFDTPDLVALRDKAMFE 157 Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII-TVELPDGFMKLLAMTPIGKET-- 254 SGLR ++ + L ++ G V + M+++ + T Sbjct: 158 LCYSSGLRLAELANLKPEDLSLAEGIVRVTGKGNKTRDVPVGSKAMQVVREWIKQRATLA 217 Query: 255 ------FFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHE 306 F++ + ++ K +A K G++ H +R A+ + Sbjct: 218 KPGETGLFLSRHGRNISRRSIDQRLKIQAVKQGISGRIHPHVLRHSFASHVLQSSGNLRA 277 Query: 307 LMATYGWKTVDQAETYTK 324 + G ++ + YT Sbjct: 278 VQEMLGHASISTTQVYTH 295 >gi|295399802|ref|ZP_06809783.1| tyrosine recombinase XerC [Geobacillus thermoglucosidasius C56-YS93] gi|312111686|ref|YP_003990002.1| tyrosine recombinase XerC [Geobacillus sp. Y4.1MC1] gi|294978205|gb|EFG53802.1| tyrosine recombinase XerC [Geobacillus thermoglucosidasius C56-YS93] gi|311216787|gb|ADP75391.1| tyrosine recombinase XerC [Geobacillus sp. Y4.1MC1] Length = 300 Score = 117 bits (293), Expect = 3e-24, Method: Composition-based stats. Identities = 49/284 (17%), Positives = 104/284 (36%), Gaps = 28/284 (9%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIR---KSGDFDYRKITTKHIR---SGVESR 126 L EY + + + + + ++ +Q + G D ++T +R + + + Sbjct: 9 QLFIEYLQIE--KNYSQYTIVCYQRDIEQFFEFMNEQGIHDLAEVTYSDVRLYLTKLYEQ 66 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF- 185 K + S + ++S+R +K+ +R++ V NP PK++ + +++++ Sbjct: 67 KQSSRSVSRKISSLRSFYKFLLREKKVLENPFALAALPKKEQKIPNFLYEQELEILFHVN 126 Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVE----- 236 + G + + E L +G+R S+ C + + + +I K V Sbjct: 127 DVNTAIGQRNQAMLELLYATGVRVSECCHIQLSDIDFSSSTILIHGKGSKQRYVPFGRFA 186 Query: 237 -------LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAH 287 + G +LL F+N + KA + + S H Sbjct: 187 KEALERYIHHGRRELLQNAKAAHAYLFVNARGNPLTPRGARYILDEMVKKAALTQHVSPH 246 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIR 330 +R AT + GA + G + + YT DR+R Sbjct: 247 VLRHTFATHLLNEGADMRAVQELLGHAHLSSTQVYTHVTKDRLR 290 >gi|254501286|ref|ZP_05113437.1| tyrosine recombinase XerD [Labrenzia alexandrii DFL-11] gi|222437357|gb|EEE44036.1| tyrosine recombinase XerD [Labrenzia alexandrii DFL-11] Length = 307 Score = 117 bits (293), Expect = 3e-24, Method: Composition-based stats. Identities = 41/289 (14%), Positives = 90/289 (31%), Gaps = 32/289 (11%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP---SSAIQFLTSMR 141 A N+ + + G + + HI + +S + L++++ Sbjct: 18 RGAAENTLAGYRRDLEDFSDFLGRTKLAEANSDHISGYMSDLTRRGFAETSQARRLSALK 77 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF--------------KSFWS 187 +K+ + +P ++ PK++ + + +++ + + Sbjct: 78 QFYKFLYSEGSRQDDPTRTLSAPKKRGSLPKVLSMDEVDRLIETARQQTKVSHKSAAAAL 137 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGV-QHLQNNIFSIKTQKTGTIITVELPDGFMKLL- 245 + E L +GLR S+ V L++ K G V L + Sbjct: 138 RAQRMYTLIEVLYATGLRVSELVALPVTAALRDARLIEIKGKGGKERLVPLSHAAQSAMK 197 Query: 246 -------AMTPIGKETFFINNDKQ--KMNATQFSIWFKAKATKAGVNKS---AHGVRKFS 293 A + + + F K A AG++ S H +R Sbjct: 198 MYVGLRSAEGAYENSPWLFPSHGGSGHLTRQHFGRDLKDLAIAAGLDASKVSPHVLRHAF 257 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGAD-RIRLGIKNSRRISS 341 A+ GA + G + + YT D R+R ++ + ++ Sbjct: 258 ASHLLQNGADLRVVQQLLGHADISTTQIYTHVLDERLRELVETAHPLAR 306 >gi|208779508|ref|ZP_03246853.1| phage integrase family protein [Francisella novicida FTG] gi|208744469|gb|EDZ90768.1| phage integrase family protein [Francisella novicida FTG] Length = 292 Score = 117 bits (293), Expect = 3e-24, Method: Composition-based stats. Identities = 38/264 (14%), Positives = 94/264 (35%), Gaps = 18/264 (6%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI---RSGVESRKHTPSSAIQFLTSMR 141 + + + +++ Q+ + D + +T I + ++ ++P + + L+S+R Sbjct: 18 KNYSQETINNYQRDLLQLNQALSDKNIISLTHSDILIWIKKLHAQGNSPKTLQRKLSSVR 77 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG---SQPRLAFEF 198 F + + E V+ NP ++ PK + +++ ++ F+ Sbjct: 78 SFFNFLINSEIVSQNPANGIKAPKDSKRLPKVVNTDELAYLLDVNPSNDIEARDIACFDL 137 Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------ELPDGFMKLLAMTP 249 L G+R S+ ++++ + +I+ G + L K+ Sbjct: 138 LYSCGIRLSELSSVELKYISISQKNIRVTGKGNKQRIVYFGTKTLSNLNRWL-KIRDSLK 196 Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATK-AGVNKSAHGVRKFSATISADAGATAHELM 308 + FI+ D + + + A K A + H +R A+ D+ + Sbjct: 197 PSSDYLFISRDGKHLTNRSIQKRLEIFAQKYASRHIHPHMLRHSFASHVLDSSKDLLAVK 256 Query: 309 ATYGWKTVDQAETYTKGADRIRLG 332 G + + YT + +L Sbjct: 257 DLLGHADISSTQIYTH-LNFQQLA 279 >gi|189459539|ref|ZP_03008324.1| hypothetical protein BACCOP_00163 [Bacteroides coprocola DSM 17136] gi|189465731|ref|ZP_03014516.1| hypothetical protein BACINT_02092 [Bacteroides intestinalis DSM 17393] gi|189433791|gb|EDV02776.1| hypothetical protein BACCOP_00163 [Bacteroides coprocola DSM 17136] gi|189433995|gb|EDV02980.1| hypothetical protein BACINT_02092 [Bacteroides intestinalis DSM 17393] Length = 372 Score = 117 bits (293), Expect = 3e-24, Method: Composition-based stats. Identities = 54/318 (16%), Positives = 99/318 (31%), Gaps = 30/318 (9%) Query: 28 GHGRRIRLPYPHESTFIPAY-------MSALTGSTPKREYINSPRKKPTTLKWLISEYRK 80 G + + F Y SA+ + P++E P Y + Sbjct: 47 GGRAYLPAEDFVLAEFFDRYVKMAFIDYSAIKETAPRKEEDKRPPLPEG--------YLE 98 Query: 81 SAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG----VESRKHTPSSAIQF 136 + ++ + SYF + +T I + + + Q Sbjct: 99 KLQQVRYSDHTVRVYTSYFRDFQQHFEGRKIETVTPGEINDYLLYLIHEKNISSCQQNQR 158 Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF 196 + +++ ++ + QE C V R KR+ +KE++++ + F Sbjct: 159 INAIKFYYEKVLGQERR----CYKVNRAKREKTLPDVLSKEEIKKILDATVTDLRFFCMF 214 Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTIITVELPDGFMKLL---AMTPIG 251 L +GLR S+ + + ++ K L MK L Sbjct: 215 SILYSAGLRISELLELKPGDINESRSLIRVRQGKGKKDRYTLLSKPLMKKLTEYNRLYKP 274 Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMA 309 K F + + + S KA A +AG+ K H +R AT + G + Sbjct: 275 KVWLFEHRPGEPFTESIVSKRLKAAAREAGITKRIYPHLLRHSFATHLLEQGTDIKIVKE 334 Query: 310 TYGWKTVDQAETYTKGAD 327 G + E Y AD Sbjct: 335 LMGHNNIKTTERYVHIAD 352 >gi|302528010|ref|ZP_07280352.1| tyrosine recombinase XerD [Streptomyces sp. AA4] gi|302436905|gb|EFL08721.1| tyrosine recombinase XerD [Streptomyces sp. AA4] Length = 310 Score = 117 bits (293), Expect = 3e-24, Method: Composition-based stats. Identities = 49/265 (18%), Positives = 87/265 (32%), Gaps = 29/265 (10%) Query: 88 AVNSRISFESYFDQI---IRKSGDFDYRKITTKHI--------RSGVESRKHTPSSAIQF 136 A N+ S+ + + +G ++T H+ E + SSA + Sbjct: 26 ARNTLDSYSRDLRRYAAHLEAAGVVRLAEVTPAHVTSFGAALREGDEEHQPLAASSAARA 85 Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQP 192 L ++R L K+A +P V P + D+ + + Sbjct: 86 LVAVRGLHKFAHADGLTEHDPARDVRPPAAAKRLPKALPVADVLKLLDTPPRDGERALRD 145 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQN-NIFSIKTQKTGTIITVELPDGFMKLL------ 245 R E L +G R S++ V + + + K G V + ++ L Sbjct: 146 RALLELLYSTGARISEAVGLDVDDVDDTERTVLLDGKGGKQRLVPIGRPALEALDAYLVR 205 Query: 246 -----AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISA 298 A G F+N +++ K A +AG+ S H +R AT Sbjct: 206 ARPALAANGRGTSAIFLNARGSRLSRQSAWQVLKDTAERAGITAAVSPHTLRHSFATHLL 265 Query: 299 DAGATAHELMATYGWKTVDQAETYT 323 + GA + G +V + YT Sbjct: 266 EGGADVRVVQELLGHASVTTTQVYT 290 >gi|326389407|ref|ZP_08210974.1| integrase family protein [Thermoanaerobacter ethanolicus JW 200] gi|325994412|gb|EGD52837.1| integrase family protein [Thermoanaerobacter ethanolicus JW 200] Length = 330 Score = 117 bits (293), Expect = 3e-24, Method: Composition-based stats. Identities = 49/268 (18%), Positives = 93/268 (34%), Gaps = 25/268 (9%) Query: 99 FDQIIRKSGDFDYRKITTKHIRSGV-------ESRKHTPSSAIQFLTSMRVLFKWAVRQ- 150 FD+I D D I + + R +TP + + + S+R + + ++ Sbjct: 66 FDEI--DISDVDVDLIESVDLNDLYAYLNFVANERSNTPPARARKVASLRSFYNYLYKKA 123 Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR--LAFEFLLYSGLRCSD 208 + ++ NP +E PK T ++ ++ + + R L GLR S+ Sbjct: 124 KVLSKNPTQELESPKLSVRQPIYLTLDESKKLLNSIDGPFKERDYAIITLFLNCGLRVSE 183 Query: 209 SCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM--------TPIGKETFFINND 260 + ++++ ++ K TV L D + + K+ F++ Sbjct: 184 LVNINLDDIKDDKLTVI-GKGNKQRTVYLNDACIDAINTYLEVRPKEGVKDKKALFLSKR 242 Query: 261 KQKMNATQFSIWFKAKATKA---GVNKSAHGVRKFSATISADAG-ATAHELMATYGWKTV 316 ++++ K A G SAH +R +AT+ G L G V Sbjct: 243 LKRISVKTVQYTVKKHLKNANLEGKKYSAHKLRHTAATLMYRYGNVDIRTLQKLLGHSNV 302 Query: 317 DQAETYTKGADRIRLGIKNSRRISSVVD 344 + YT D N +S D Sbjct: 303 STTQIYTHVDDSQLKEAVNKNPLSQKED 330 >gi|312134835|ref|YP_004002173.1| integrase family protein [Caldicellulosiruptor owensensis OL] gi|311774886|gb|ADQ04373.1| integrase family protein [Caldicellulosiruptor owensensis OL] Length = 376 Score = 117 bits (293), Expect = 3e-24, Method: Composition-based stats. Identities = 57/330 (17%), Positives = 115/330 (34%), Gaps = 43/330 (13%) Query: 49 SALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSG 107 AL + E K T+ I+E+ + H L ++ S++ ++ Sbjct: 43 KALAELVNQIEKQEFVEDKNVTIGEFINEWFE-IHCKKLTPKTQESYQKMLRFYVLPYLN 101 Query: 108 DFDYRKITTKHIRSGVESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP 164 D + + I + K ++ +R ++ +AV+ +YV NP +VE P Sbjct: 102 DIELATLKPLTIAKFYNTLKEQGISNTTLNYVHRLLREIYNFAVKWQYVTKNPFDNVETP 161 Query: 165 KRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ------ 218 K+ + ++ W +++++ + + + + LY+G+R + C + Sbjct: 162 KKDRKEMQVWNLDEIRKAEEVFRD-TPIFAHVMLALYTGMRLGEVCGLKWDDIDFKNKVC 220 Query: 219 ---------NNIFSIKTQ-KTGTIITV-ELPDGFMKLLAMTPIG------------KETF 255 N IK + KT + + L D +++L T+ Sbjct: 221 AVRRVAEYINGEVVIKEKPKTDKSLRIVALTDNLVEILKEEKKRQLENKLKFGQNYDTTY 280 Query: 256 --FIN--NDKQKMNATQFSIWFKAKATKAG-VNK-SAHGVRKFSATISADAGATAHELMA 309 FI+ D + S F +K + K H +R AT+ AG + Sbjct: 281 DGFISVWEDGRFKVPDYVSKKFSKILSKQNEIKKIRFHDLRHTHATLLLQAGVNMKVISD 340 Query: 310 TYGWKTVDQA-ETYTK-GADRIRLGIKNSR 337 G + + Y+ D R I+ Sbjct: 341 RLGHSQISITMDLYSHVNLDMQREAIEKLE 370 >gi|312872353|ref|ZP_07732423.1| putative tyrosine recombinase XerC [Lactobacillus iners LEAF 2062A-h1] gi|312873924|ref|ZP_07733960.1| putative tyrosine recombinase XerC [Lactobacillus iners LEAF 2052A-d] gi|329921329|ref|ZP_08277767.1| putative tyrosine recombinase XerC [Lactobacillus iners SPIN 1401G] gi|311090473|gb|EFQ48881.1| putative tyrosine recombinase XerC [Lactobacillus iners LEAF 2052A-d] gi|311092176|gb|EFQ50550.1| putative tyrosine recombinase XerC [Lactobacillus iners LEAF 2062A-h1] gi|328934621|gb|EGG31125.1| putative tyrosine recombinase XerC [Lactobacillus iners SPIN 1401G] Length = 307 Score = 117 bits (293), Expect = 3e-24, Method: Composition-based stats. Identities = 35/279 (12%), Positives = 96/279 (34%), Gaps = 26/279 (9%) Query: 72 KWLISEYRKS-AHWGSLAVNSRISFESYFDQ----IIRKSGDFDYRKITTKHIR---SGV 123 + Y + + ++N+ ++ + + G D+ K++++ I + Sbjct: 5 DDFLKLYYNYLKNERNYSINTCKAYMDDLSEARTFFVENGGFIDWLKLSSRDIEIFIQYL 64 Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 +K+ S+ + ++++R +++ ++ + +NP + ++M + Sbjct: 65 AQKKYKRSTQSRKISTLRSFYRFLNKRNIIPVNPVELISLRGDHKNLPEFLYSDEMVKVL 124 Query: 184 S----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKT-------G 230 G + E +G+R S+ + + N+ + + G Sbjct: 125 KSISTTTPLGLRNMALLELFYATGMRVSEIANLKLDQVDFELNLILVHGKGNKDRYVAFG 184 Query: 231 TIITVELPDGFMKLLAMT---PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS-- 285 L + ++ F+N++ + + K AG++ S Sbjct: 185 EEAKTALNNYLVEARKKLLLHKTDYGYVFLNSNGNMITSRGLEYIIKNIFLNAGISASVH 244 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R AT + GA + G +++ + YT Sbjct: 245 PHMLRHTFATQMLNNGADLRTVQELLGHESISTTQIYTH 283 >gi|297584028|ref|YP_003699808.1| tyrosine recombinase XerC [Bacillus selenitireducens MLS10] gi|297142485|gb|ADH99242.1| tyrosine recombinase XerC [Bacillus selenitireducens MLS10] Length = 303 Score = 117 bits (293), Expect = 3e-24, Method: Composition-based stats. Identities = 39/268 (14%), Positives = 88/268 (32%), Gaps = 22/268 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDF----DYRKITTKHIRSGVESRKHTPSSAIQFLTSM 140 + ++ ++ + D + + ++ + + + L S+ Sbjct: 24 KGASPSTISQYQKDICAFFQNMDHTKPVEDVNHQDIRRYLALLQKDGYARRTVARKLASL 83 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRLAF 196 R L+++ R+ + +NP L V PK + + +MQ G++ Sbjct: 84 RSLWRFLEREGRIQLNPFLYVTTPKLDKKLPSFLYENEMQAIFDAIDTDSLLGARNLAII 143 Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLA--------- 246 E L SG+R S+ ++ + ++ ++ K + + ++ L+ Sbjct: 144 ELLYASGIRASECTGLKLKDIDLDLSTLLVMGKGKKERFLPVGSFAVEALSLYLDKRTAK 203 Query: 247 -MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGAT 303 + FIN + A + + H +R AT + GA Sbjct: 204 FGPHAQSDPLFINYRGGALTDRGLRKILAKVIEDASLTSKLTPHVIRHTFATHMLNEGAD 263 Query: 304 AHELMATYGWKTVDQAETYTK-GADRIR 330 + G + + YT DR+R Sbjct: 264 LRTVQELLGHTDLKATQIYTHVTRDRLR 291 >gi|225864449|ref|YP_002749827.1| DNA integration/recombination/invertion protein [Bacillus cereus 03BB102] gi|225788669|gb|ACO28886.1| site-specific recombinase, phage integrase family [Bacillus cereus 03BB102] Length = 292 Score = 117 bits (293), Expect = 3e-24, Method: Composition-based stats. Identities = 45/288 (15%), Positives = 97/288 (33%), Gaps = 37/288 (12%) Query: 90 NSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVL---FK 145 ++ + + ++ + II G K+ HI+ ++ + L R+L Sbjct: 6 STFVGYRAFINQHIIPSIGMVALHKLNVMHIQKCYKTAIDRGIANNSVLLMHRILKSALN 65 Query: 146 WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLR 205 AV+Q ++ NP E PK++ I+ WT+E++++F S+ S+ + + + +G+R Sbjct: 66 LAVKQNIISRNPADFAEIPKKERTSIQTWTEEEVKKFL-LHSQESRYHIGYLLAITTGMR 124 Query: 206 CSDSCRAGVQHLQ--------------NNIFSIKTQKTGTIITVELPDGFMKLLAMTPI- 250 + Q + +N + + T+ +P ++ L + Sbjct: 125 MGEVLGLRWQDVDFEKHTVTINQTSGHDNKIKKTAKTNSSKRTIPVPKETIESLKKHKVL 184 Query: 251 -------------GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATI 296 + N + F F AGV + H +R ATI Sbjct: 185 INQEKLRLGSAYQDFDLINCNEFGMIIKKANFRNNFIRAIHNAGVKEIKFHDLRHTHATI 244 Query: 297 SADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSVV 343 G + G + Y+ + + + + Sbjct: 245 LLKQGVNPKIISERLGHTDISMTLSVYSHVL--PNMQEEAVKNFGKSI 290 >gi|302036632|ref|YP_003796954.1| putative integrase [Candidatus Nitrospira defluvii] gi|300604696|emb|CBK41028.1| putative Integrase [Candidatus Nitrospira defluvii] Length = 356 Score = 117 bits (293), Expect = 3e-24, Method: Composition-based stats. Identities = 56/311 (18%), Positives = 110/311 (35%), Gaps = 23/311 (7%) Query: 29 HGRRIR-LPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSL 87 GR++R + A +S + + +Y + P+++ T + L+ Y + Sbjct: 17 EGRQVRRSTETSDKKLAEAILSKVKVQIVEGKYFDKPKEEARTFRELMDRYLREHA---- 72 Query: 88 AVNSRISFESYFD---QIIRKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFLTSMR 141 + R + Y + + G+ +T K I + R TP++ + L M+ Sbjct: 73 --SRRSGYRRYVNMVTNLTAHFGNPKLEHVTPKTIVAYKNKRYADGVTPATINRELALMK 130 Query: 142 VLFKWA-VRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL 200 F A E+ NP V + R T E+ ++ + + Q + F Sbjct: 131 KAFNLACREWEWTKDNPVCRVSMERENNTRDRWLTCEEERRLLAASAPWLQEVIVFAI-- 188 Query: 201 YSGLRCSDSCRAGVQHLQNNIFSIKT--QKTGTIITVELPDGFMKLLAMTPIGKET---- 254 ++GLRC + + N + K G T+ L ++ L G+ Sbjct: 189 HTGLRCGEILNLTWAGVDLNRRTATVFKSKNGERRTIPLSHTLVQALQNKARGRRMDSEL 248 Query: 255 FFINNDKQKMNATQFSIWFKAKATKAG-VNKSAHGVRKFSATISADAGATAHELMATYGW 313 F + ++A F+ ++ H +R SAT AG +++ G Sbjct: 249 VFTSAAHTPLDAPNLRRSFRLALKHGQVLDFRFHDLRHTSATRMVQAGVDLYKVQRILGH 308 Query: 314 KTVDQAETYTK 324 K+ + Y Sbjct: 309 KSPMMTQRYAH 319 >gi|312892234|ref|ZP_07751731.1| integrase family protein [Mucilaginibacter paludis DSM 18603] gi|311295364|gb|EFQ72536.1| integrase family protein [Mucilaginibacter paludis DSM 18603] Length = 322 Score = 117 bits (293), Expect = 3e-24, Method: Composition-based stats. Identities = 39/245 (15%), Positives = 81/245 (33%), Gaps = 21/245 (8%) Query: 105 KSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP 164 D Y+ I ++ + + S + ++ +R FK+A+R+ + NP ++ P Sbjct: 70 HIADITYQDIREWIVQLMNDDQAAK--SINRKISCLRTFFKFALREGIITANPASKIQAP 127 Query: 165 KRKTEGIRPWTKEDMQQFKSFWSE------GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ 218 K ++ + S G + +L E L +G+R ++ + Sbjct: 128 KIPKRLPVVVEEDKIVSLLSSSQIFDDSFTGLRDKLVIELLFGTGIRLAELVGLKETDID 187 Query: 219 NNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGK---------ETFFINNDKQKMNATQ 268 +IK K + + LL K T + + + Sbjct: 188 IYEGTIKVLGKRNKERVIPIHSELKLLLVHYINIKKSENFNNNSLTLIVTSKGANAYSKM 247 Query: 269 FSIWFKAKA--TKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-G 325 + + KS H +R AT + GA + + G + + YT Sbjct: 248 VYLIVQKYLSLISTQDKKSPHVLRHSFATSLLNHGADLNAIKELLGHANLSATQIYTHNS 307 Query: 326 ADRIR 330 +R++ Sbjct: 308 VERLK 312 >gi|304388409|ref|ZP_07370516.1| tyrosine recombinase XerC [Neisseria meningitidis ATCC 13091] gi|304337590|gb|EFM03752.1| tyrosine recombinase XerC [Neisseria meningitidis ATCC 13091] Length = 305 Score = 117 bits (293), Expect = 3e-24, Method: Composition-based stats. Identities = 36/278 (12%), Positives = 85/278 (30%), Gaps = 24/278 (8%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD-------YRKITTKHIRSGV 123 Y ++ + ++ ++ +++ + ++ + + + Sbjct: 6 FAAHFDAYLENIVREGKSGHTVAAYRRDLEELFALLAQMPSEDAGGVPQGLSQRDFTAAL 65 Query: 124 ES---RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 R + + L+S R W V++ + +P ++ PK+ + +E + Sbjct: 66 RRLSQRGLNARTLARKLSSWRQYCAWLVKRGLLHTDPTADIKPPKQPERVPKALPQEWLN 125 Query: 181 QFKSF-----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIIT 234 + + FE + SGLR S+ + + + G Sbjct: 126 RMLDLPVDGGDPLAVRDHALFELMYGSGLRVSEIHGLNADDVYLDEAWVHVTGKGRKQRQ 185 Query: 235 VEL----PDGFMKL--LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK--AGVNKSA 286 V L + L T + F + +++ Q A + G + S Sbjct: 186 VPLVGKSVEALKNYLPLRQTASDGKALFTGRNGTRLSQRQIQKRLAQWAAQNGDGRHVSP 245 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R A A + G ++ + YTK Sbjct: 246 HMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTK 283 >gi|255020750|ref|ZP_05292809.1| Site-specific recombinase XerD [Acidithiobacillus caldus ATCC 51756] gi|254969812|gb|EET27315.1| Site-specific recombinase XerD [Acidithiobacillus caldus ATCC 51756] Length = 308 Score = 117 bits (293), Expect = 3e-24, Method: Composition-based stats. Identities = 49/269 (18%), Positives = 88/269 (32%), Gaps = 23/269 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGD-----FDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139 G+LA NS ++ + D + S + L+S Sbjct: 30 GNLAANSLEAYSRDLRLLATYLAASQRRLRDADAADLSLFLAQRLQGGAALRSVARQLSS 89 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRLA 195 +R + +A R+ + +P S++ ++ ++ + G + Sbjct: 90 LRRFYAFAQREGWRGDDPSASLQHLHIGRHLPAVPSEGEVDALLAAPDRRTVLGLRDAAM 149 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDGFMKLLAM------- 247 E L +GLR S+ L + K + + + ++ L Sbjct: 150 LETLYATGLRVSELVGLLCSQLDLEAGVVLTLGKGSKERLIPVGEVALETLHRYLREARG 209 Query: 248 ---TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302 F+ + M+ +F KA ATKAG+ S H +R AT D GA Sbjct: 210 ALLGHKQSPALFLTVRGEAMSRQRFWQTIKAHATKAGIRSAFSPHSLRHAFATHLLDHGA 269 Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRL 331 + G ++ E YT A + RL Sbjct: 270 DLRSVQLMLGHAQLNTTEIYTHIA-QARL 297 >gi|329113620|ref|ZP_08242399.1| Shufflon-specific DNA recombinase [Acetobacter pomorum DM001] gi|326697066|gb|EGE48728.1| Shufflon-specific DNA recombinase [Acetobacter pomorum DM001] Length = 424 Score = 117 bits (293), Expect = 3e-24, Method: Composition-based stats. Identities = 55/320 (17%), Positives = 112/320 (35%), Gaps = 18/320 (5%) Query: 21 IIYYFRKGHGRRIRL--PYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT---LKWLI 75 +++Y G RR + P + + N+ R + T + Sbjct: 74 VVHYRANGRFRRYTIGHHGPWTADKARDEAIKILARVKDGNDPNTERGEERTSPTVSQFC 133 Query: 76 SEYRKSAHWGSLAVNSRISFESYFDQII-RKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134 + + L ++ ++ D I +K G +T + + + +H P A Sbjct: 134 KIFIERHVKTHLKSTTQAEYQRAIDLFITKKIGSRKMAAVTHSDVVTFHHTYRHIPYQAN 193 Query: 135 QFLTSMRVLFKWAVRQEYVAIN--PCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG--- 189 + L + +F A+ N PC V+R K + R E+ Q+ + Sbjct: 194 RTLGVLSKMFSLAILWGVRTDNVNPCRGVKRYKEQKRE-RYLAAEEHQRLGKALDDARST 252 Query: 190 -SQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDGFMKLLA 246 + AF+ LL +G R + R +++ + + K G TV+L + + LL Sbjct: 253 MPEAVNAFQLLLLTGCRLREIQRLKWEYVFLDEGVIRLPDSKNGAR-TVQLGESAIGLLG 311 Query: 247 MTP-IGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATA 304 P + + I K + T ++ +AG+ + H +R A+ + + G Sbjct: 312 DIPRVEGNPYVITGRKDGGHLTDLEKPWRRIRKEAGLEDVRIHDLRHSFASDALELGEDL 371 Query: 305 HELMATYGWKTVDQAETYTK 324 + G + + Y Sbjct: 372 IMIGKLLGHRDLKSTARYAH 391 >gi|134299970|ref|YP_001113466.1| phage integrase family protein [Desulfotomaculum reducens MI-1] gi|134052670|gb|ABO50641.1| phage integrase family protein [Desulfotomaculum reducens MI-1] Length = 301 Score = 117 bits (293), Expect = 3e-24, Method: Composition-based stats. Identities = 40/271 (14%), Positives = 88/271 (32%), Gaps = 29/271 (10%) Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGVE------SRKHT 129 Y++S +L+ + ++ + I D + T R V ++ Sbjct: 13 YQES---RNLSPRTLEWYKYITAKFINYCNDNDIQIDSLKTPEARQWVNWLQKGSETQYK 69 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 +S + +++ +F + + EY+ NP V + K I + +++++ + ++ Sbjct: 70 GNSINCHIRAIKTMFNYFMEDEYIDKNPFHKVSKIKVDNTIIHTFEPDEIKKMLAQLNKN 129 Query: 190 S----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE----LPDG 240 + + L + GLR S+ + + + K K V + Sbjct: 130 TFYDLRDNLMLRIMYDCGLRVSEIINLKITDIDTDKNMFKVFGKGHKERMVPFGRSVKRE 189 Query: 241 FMKLL----AMTP--IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRK 291 +K L P + + N ++ + AG+ S H R Sbjct: 190 LVKYLPKRNKAVPHDLDEGYLLCTNQGTPLHKRNILRKIRIVGQGAGIEGKRLSPHTYRH 249 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETY 322 A AG L G +++ Y Sbjct: 250 SFAKQYLMAGGDLFSLQTIMGHSSLNSTRRY 280 >gi|291550597|emb|CBL26859.1| Site-specific recombinase XerD [Ruminococcus torques L2-14] Length = 306 Score = 117 bits (293), Expect = 3e-24, Method: Composition-based stats. Identities = 39/281 (13%), Positives = 89/281 (31%), Gaps = 26/281 (9%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133 + +Y + + L N+ ++ Q + + K + + + +K + Sbjct: 7 VEKYLEYCEFRKELDWNTLKAYRIDLRQFFEYTMEDIPGKEKIEDYITELH-KKFKQKTI 65 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVER-PKRKTEGIRPWTKEDMQQFK--------- 183 + + S++ + + +E ++ NP ++ K R +E++++ Sbjct: 66 KRKIASVKAYYNFLEEREIISDNPFRKIKVGFKESIILPRIIPREEIEELLNFMYAQENK 125 Query: 184 ---SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITV---- 235 + E L +G R + + N I+ K G + Sbjct: 126 SNVKVHKFWLRDIAVIETLFATGARVYEISNIREDSVNLNTGLIRLMGKGGKERYIQIAS 185 Query: 236 -ELPDGFMKLL---AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289 E+ D A FF+NN + + K AG+ + + H Sbjct: 186 SEILDLLKNYYKENAKEIKQSGFFFVNNRGCRYTEQSIRLMLKKYTKLAGIERNITPHMF 245 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 R AT + G + G ++ + Y A + + Sbjct: 246 RHSFATYLIEEGVDISCVQQILGHSSIKTTQIYIHVAAKKQ 286 >gi|327399621|ref|YP_004340490.1| Tyrosine recombinase xerC [Hippea maritima DSM 10411] gi|327182250|gb|AEA34431.1| Tyrosine recombinase xerC [Hippea maritima DSM 10411] Length = 276 Score = 117 bits (292), Expect = 3e-24, Method: Composition-based stats. Identities = 49/278 (17%), Positives = 105/278 (37%), Gaps = 21/278 (7%) Query: 76 SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQ 135 EY S + N+ ++ + + ++ + FD + + R + S+ + Sbjct: 9 EEYLNS---KYSSKNTIKAYLTDTQEFLKNTKGFDRDDVEV--FLVKLFDRGLSSSTITR 63 Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA 195 L S+ + F++ + V INP +++PK+K + +D+ + + R Sbjct: 64 KLASLSIFFEFLKLKGKVRINPLRVIDKPKQKKMLPKFLEVDDVVALLEGIKD-KRDRAL 122 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLA--MTPIGK 252 FE + S LR S++ + + I+ +K G ++ V + L + + Sbjct: 123 FELIYSSSLRASEALGLDINDIDFENLRIRIRRKGGKVVYVPISQRAALFLKDYLKDRKE 182 Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMAT 310 F+N ++++ K A + + S H +R AT ++G L Sbjct: 183 GPLFLNRYGKRLSDRYLRRLIKKYALS-SIFKDVSPHTLRHSKATHLLNSGMDIRLLQRL 241 Query: 311 YGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348 G ++ + YT N + ++ DS P Sbjct: 242 LGHSSIKATQIYTH---------LNLKELAQTYDSTHP 270 >gi|238026040|ref|YP_002910271.1| phage integrase:phage integrase, N-terminal SAM-like protein [Burkholderia glumae BGR1] gi|237875234|gb|ACR27567.1| Phage integrase:Phage integrase, N-terminal SAM-like protein [Burkholderia glumae BGR1] Length = 342 Score = 117 bits (292), Expect = 3e-24, Method: Composition-based stats. Identities = 58/348 (16%), Positives = 113/348 (32%), Gaps = 37/348 (10%) Query: 1 MTPSLRLPPFVTKERTRH---GKIIYYFRKG--HGRRIRLPYPHESTFIPAYMSALTGST 55 M + P + + R+R G + YY+ G GRRI P + + L G+ Sbjct: 1 MAGKAQTPGAIPRFRSRKNADGSLRYYYDHGEVDGRRILEPLGTDRVVALQRWAELEGAR 60 Query: 56 PKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT 115 S T L YR + ++ ++ + ++ GD + +T Sbjct: 61 A-----PSSETTRHTFAMLEQAYRI-RELPQKSAATQRMYDLFLSRLAGVIGDRELDTLT 114 Query: 116 TKHIRSGVESRKHTPS--SAIQFLTSMRVLFKWAVRQEYVA-INPCLSVERPKRKTEGIR 172 + + + +A + + ++ + NPC V R K++T Sbjct: 115 PADVATIWRATAEKRGVVTANRTKAVLSLVLNCGRLWGMMTIANPCAGV-RGKKETGRQA 173 Query: 173 PWTKEDMQQFKSFWSEGSQP-RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231 +++ + + ++ QP R A + R SD R ++ +TQKTG Sbjct: 174 ILIDDEL--YAAVYTVADQPLRNAMDLADLCAQRPSDVLRVQRSNIVRGNLIFRTQKTGA 231 Query: 232 IITVELPDGFMKLLAMTPI-------GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284 +TV++ L+ + + + + F +AG++K Sbjct: 232 FVTVQITGDLAALIERLLAWRGSKVDVSPYLLRDEEGYPLTKGKLRSRFDKARERAGIDK 291 Query: 285 SAHGVRKFSATISADAGATAHEL-------MATYGWKTVDQAETYTKG 325 + KF G T + G Y +G Sbjct: 292 A-----KFQFRDLRARGVTHKTIDEGLEAGQRLAGHSGPGMTARYVRG 334 >gi|239828168|ref|YP_002950792.1| integrase [Geobacillus sp. WCH70] gi|239808461|gb|ACS25526.1| integrase family protein [Geobacillus sp. WCH70] Length = 329 Score = 117 bits (292), Expect = 3e-24, Method: Composition-based stats. Identities = 46/275 (16%), Positives = 101/275 (36%), Gaps = 22/275 (8%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFE---SYFDQIIRKSG------DFDYRKITTKHIRS 121 + + ++ + + + + S F +I+R+ G I I Sbjct: 28 FQIALEKFLEDCEIRNCRPQTIQYYRNELSVFYKILREQGIEVNIYRMTPEIIKQNVILY 87 Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAI--NPCLSVERPKRKTEGIRPWTKEDM 179 + + L ++R F + R++ ++ NP ++ K + + + +TKE++ Sbjct: 88 MKNQKNCKTVTINTRLRALRAFFNFLEREKIISKKQNPFHEIKLLKDRKKAVPTFTKEEI 147 Query: 180 QQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTII 233 + G + LL +G+R S+ + + + I+ K Sbjct: 148 HILFKQPNLRTFTGVRDLTIMMLLLETGIRASECVGIRLGDIDFQRSRILIQNTKGYRQR 207 Query: 234 TVEL----PDGFMKLLAMTPI-GKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHG 288 V + + K LA+ + F++ D + Q ++ K G++ + H Sbjct: 208 YVPIQKQMKEQLKKYLAIRGTLDHDYLFVSVDDTPLTKRQMQAQIESYGKKCGIHATCHK 267 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 R A +S +AGA EL A G +++ + Y Sbjct: 268 FRHTFARLSVEAGAGIFELQAVLGHSSMEMVKHYV 302 >gi|37528455|ref|NP_931800.1| site-specific tyrosine recombinase XerC [Photorhabdus luminescens subsp. laumondii TTO1] gi|36787893|emb|CAE17010.1| integrase/recombinase [Photorhabdus luminescens subsp. laumondii TTO1] Length = 303 Score = 117 bits (292), Expect = 3e-24, Method: Composition-based stats. Identities = 43/270 (15%), Positives = 94/270 (34%), Gaps = 20/270 (7%) Query: 75 ISEYRKSAH-WGSLAVNSRISFESYFDQIIR---KSGDFDYRKITTKHIRSGV-ESRKHT 129 I + + L+ + + + + + G ++ + +R V SR+ Sbjct: 12 IEAFLRYLRVERRLSPVTITHYRRHLATLAEMVLEMGVSQWQDLDPAKVRMLVTRSRRAG 71 Query: 130 PSSAIQ--FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-- 185 SA L+S+R W V Q +++NP +V P K + +++ Q + Sbjct: 72 LQSANLALRLSSLRSFLDWQVIQGEISVNPSKTVSTPGTKRHLPKNIDVDEVNQLLNINF 131 Query: 186 -WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI--------ITVE 236 + R E + +GLR S+ QHL + G+ VE Sbjct: 132 NDPLSVRDRTMLEVMYGAGLRLSELVGLDCQHLDLESGEVWVSGKGSKERKVPLGHTAVE 191 Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294 + ++ + + F++ ++++ F + G+ + H +R A Sbjct: 192 WLNRWLAMRELFEPEDNAVFVSKRGRRISTRNVQKRFAQWGIRQGMSSHIHPHKLRHSFA 251 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTK 324 T ++ + G ++ + YT Sbjct: 252 THILESSGDLRAVQELLGHASLSSTQIYTH 281 >gi|50123101|ref|YP_052268.1| site-specific tyrosine recombinase XerC [Pectobacterium atrosepticum SCRI1043] gi|49613627|emb|CAG77078.1| integrase/recombinase [Pectobacterium atrosepticum SCRI1043] Length = 311 Score = 117 bits (292), Expect = 3e-24, Method: Composition-based stats. Identities = 43/259 (16%), Positives = 86/259 (33%), Gaps = 19/259 (7%) Query: 85 GSLAVNSRISFESYFDQ---IIRKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFLT 138 L+ + S+ I+ +G D+R + +RS V S L+ Sbjct: 31 RQLSPLTLTSYSRQLSAVITILSAAGIADWRALDASSVRSVVSRSKRDGLHSGSLALRLS 90 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQPRLA 195 ++R W V + + NP V P+ + +++ + + R Sbjct: 91 ALRSFLDWMVSRGVLTANPAKGVSTPRAGRPLPKNMDVDEVNRLLEIDLDDPLAVRDRTM 150 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI--------ITVELPDGFMKLLAM 247 E + +GLR ++ QH+ I G+ V + ++ L + Sbjct: 151 LEVMYGAGLRLAELVGMDYQHIDLASGEIWVMGKGSKERKLPIGKTAVTWLERWLALREL 210 Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAH 305 + FI+N ++++ F K G+N H +R AT ++ Sbjct: 211 FGPQDDAVFISNQGRRISMRNVQKRFAEWGVKQGINSHVHPHKLRHSFATHMLESSGDLR 270 Query: 306 ELMATYGWKTVDQAETYTK 324 + G + + YT Sbjct: 271 AVQELLGHANLTTTQIYTH 289 >gi|14520598|ref|NP_126073.1| integrase/recombinase xerd [Pyrococcus abyssi GE5] gi|73920473|sp|Q9V1P5|XERCL_PYRAB RecName: Full=Probable tyrosine recombinase xerC-like gi|5457814|emb|CAB49304.1| xerC/D integrase/recombinase protein [Pyrococcus abyssi GE5] Length = 286 Score = 117 bits (292), Expect = 3e-24, Method: Composition-based stats. Identities = 46/281 (16%), Positives = 106/281 (37%), Gaps = 20/281 (7%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134 I E+ + N+ + Y + + G + + ++ + ++ S Sbjct: 13 IEEFATYLELEGKSRNTVRMYTYYISKFFEE-GHSPTAR-DALRFLAKLKRKGYSTRSLN 70 Query: 135 QFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193 + +++ FK+ + E ++ PK + T+E++++ + +E + R Sbjct: 71 LVIQALKAYFKFEGLDSE------AEKLKTPKMPKTLPKSLTEEEVRRIIN-AAETLRDR 123 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDGF----MKLLAM 247 L L +GLR S+ C V+ + + + ++ K G V + + + L Sbjct: 124 LILLLLYGAGLRVSELCNLRVEDVNFEYGVIVVRGGKGGKDRVVPISESLLSEIKRYLES 183 Query: 248 TPIGKETFFI---NNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATA 304 F+ K K++ K KAGV + H +R AT + G Sbjct: 184 RNDDSPYLFVEMKRKRKDKLSPKTVWRLVKKYGRKAGVELTPHQLRHSFATHMLERGIDI 243 Query: 305 HELMATYGWKTVDQAETYTKGADR-IRLGIKNSRRISSVVD 344 + G + + YTK + + ++ +K ++ + S++ Sbjct: 244 RIIQELLGHSNLSTTQIYTKVSTKHLKEAVKKAKLVESIIG 284 >gi|254478357|ref|ZP_05091736.1| site-specific recombinase, phage integrase family [Carboxydibrachium pacificum DSM 12653] gi|214035715|gb|EEB76410.1| site-specific recombinase, phage integrase family [Carboxydibrachium pacificum DSM 12653] Length = 306 Score = 117 bits (292), Expect = 3e-24, Method: Composition-based stats. Identities = 46/284 (16%), Positives = 92/284 (32%), Gaps = 33/284 (11%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYF----DQIIRKSGDFDYRKITTKHIRSGVE-- 124 LK+ I E+ + + +L + +E D II++ + + HI++ + Sbjct: 3 LKFAIQEFLEDRKFKNLTEITVKGYERSLKAFHDYIIQQHQILNIEDVRPYHIKAYLSYR 62 Query: 125 --SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 K+ + + +++ F + V++ + NP V K T+ I +T ++Q Sbjct: 63 KKELKNNAETINHEIRNLKAFFNYFVKERVINENPVT-VPVQKTDTK-IETFTDYHIRQM 120 Query: 183 KSFWSE---------GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI- 232 ++ + + + LL +G+R + C + + + G Sbjct: 121 LRYYRKQKQRGDNFYAYRGYIMILILLGTGIRLGEMCNLRWKDIDFVNAKMTVIGKGRRQ 180 Query: 233 ITVELPDGFMKLLAMTP----------IGKETFFINNDKQKM---NATQFSIWFKAKATK 279 T+ L D K L ++M + F K Sbjct: 181 RTIPLTDNLKKELMEWRFYVEKKLGNVTEDSFVIPTQTGKRMNENSVKTFFQRLKKIMNF 240 Query: 280 AGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 V S H R A +G L G T++ Y Sbjct: 241 RDVRLSPHTFRHTFAKQWILSGGDVFSLQRILGHSTIEVTNKYV 284 >gi|323705364|ref|ZP_08116939.1| integrase family protein [Thermoanaerobacterium xylanolyticum LX-11] gi|323535266|gb|EGB25042.1| integrase family protein [Thermoanaerobacterium xylanolyticum LX-11] Length = 327 Score = 117 bits (292), Expect = 3e-24, Method: Composition-based stats. Identities = 57/304 (18%), Positives = 109/304 (35%), Gaps = 28/304 (9%) Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV-- 123 + P T+K + + + + N S FD I D D I + + Sbjct: 28 RSPNTVKAYLYDLILFFRFIKVRKNLCSD--SDFDNI--DISDVDISLIESIDLNDLYAF 83 Query: 124 -----ESRKHTPSSAIQFLTSMRVLFKWAV-RQEYVAINPCLSVERPKRKTEGIRPWTKE 177 R +TP + + + S+R + + +++ + NP L +E PK T + Sbjct: 84 LSFVTHERSNTPPARARKVASLRSFYNYLYAKRKVITKNPALELESPKLGIRQPVYLTLD 143 Query: 178 DMQQFKSFWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235 + + + + R L GLR S+ + ++++ ++ K TV Sbjct: 144 ESVKLLNSIDGEFKERDYAIITLFLNCGLRLSELANINITDIKDDKLTVI-GKGNKQRTV 202 Query: 236 ELPDGFM----KLLAMTP----IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--- 284 L D + L + P K+ F++ Q+++ K A ++ Sbjct: 203 YLNDACINAINDYLKVRPHDGVKDKKALFLSKRLQRISIKTIQYIVKKHLKDANLDGKKY 262 Query: 285 SAHGVRKFSATISADAGA-TAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343 S H +R +AT+ G L G V + YT D +L S+ S + Sbjct: 263 STHKLRHTAATLMYRYGKVDIRTLQRLLGHSNVSTTQIYTH-VDDSQLRDAVSKNPLSEL 321 Query: 344 DSDD 347 + D+ Sbjct: 322 NIDN 325 >gi|157692293|ref|YP_001486755.1| site-specific tyrosine recombinase XerC [Bacillus pumilus SAFR-032] gi|172046054|sp|A8FD78|XERC_BACP2 RecName: Full=Tyrosine recombinase xerC gi|157681051|gb|ABV62195.1| tyrosine recombinase [Bacillus pumilus SAFR-032] Length = 305 Score = 117 bits (292), Expect = 3e-24, Method: Composition-based stats. Identities = 45/277 (16%), Positives = 94/277 (33%), Gaps = 28/277 (10%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV------ESRK 127 L EY + + + + + ++ +R + + Sbjct: 10 LFIEYLQIE--KNYSALTISGYTEAIEEFVRFMNVQGIDGFEEVSYQDTRIYLTEAYEKG 67 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-- 185 T + + ++++R +K+ +R++ V NP L V PK+ +E++++ + Sbjct: 68 LTRRTISKKVSALRSFYKFLLREQLVKENPFLLVSLPKQDKRIPSFLYEEELKELFTVSD 127 Query: 186 --WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE------ 236 G + + E L +G+R S+ C L ++ ++ K V Sbjct: 128 VSTPLGQRNQAILELLYATGMRVSELCSLKESDLDLSMDTVLVHGKGSKQRYVPFGSYAH 187 Query: 237 ------LPDGFMKLLAMTPIGKETF-FINNDKQKMNATQFSIWFKAKATKAG--VNKSAH 287 L DG +KL A + + F+N + KA ++ H Sbjct: 188 EALITYLEDGRLKLKAKGKDRADAYVFLNQRGAPLTDRGVRFILTELMKKASGTLHIHPH 247 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 +R AT + GA + G + + YT Sbjct: 248 MLRHTFATHLLNEGADLRSVQELLGHSNLSSTQVYTH 284 >gi|229515837|ref|ZP_04405295.1| tyrosine recombinase XerC [Vibrio cholerae TMA 21] gi|229347100|gb|EEO12061.1| tyrosine recombinase XerC [Vibrio cholerae TMA 21] Length = 311 Score = 117 bits (292), Expect = 3e-24, Method: Composition-based stats. Identities = 38/278 (13%), Positives = 93/278 (33%), Gaps = 21/278 (7%) Query: 68 PTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIR---KSGDFDYRKITTKHIRSGV 123 P L + + H L+ ++ +++ + + + + G + ++ + +R V Sbjct: 10 PDALAQPLERFYAYLHTEKGLSQYTQRNYKQQLETMTQYLVQVGLTHWSQLDSAWVRQLV 69 Query: 124 ESRKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 K SS L+S+R + + + + NP V P+++ + ++M Sbjct: 70 MQGKRQGMKASSIATRLSSLRSFLDFLILRGELQANPAKGVSAPRKQRTLPKNLDVDEMA 129 Query: 181 QFKSFW---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI---IT 234 Q + R E + +GLR ++ V+ + + I+ G + Sbjct: 130 QLLEVTDDDPLSIRDRAIMELMYGAGLRLAELVSIDVKDVNLSEGEIRVIGKGNKERKVW 189 Query: 235 V------ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSA 286 + + + F++ +++ K V + S Sbjct: 190 FAGQAQEWVGKWLKLRSQLADSAETALFVSKLGTRISHRSVQKRMAEWGQKQAVASHISP 249 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R AT ++ + G + + + YT Sbjct: 250 HKLRHSFATHMLESSNNLRAVQELLGHENIATTQIYTH 287 >gi|269103726|ref|ZP_06156423.1| tyrosine recombinase XerC [Photobacterium damselae subsp. damselae CIP 102761] gi|268163624|gb|EEZ42120.1| tyrosine recombinase XerC [Photobacterium damselae subsp. damselae CIP 102761] Length = 306 Score = 117 bits (292), Expect = 3e-24, Method: Composition-based stats. Identities = 37/268 (13%), Positives = 85/268 (31%), Gaps = 22/268 (8%) Query: 77 EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV------ESRKHTP 130 EY +S L+++++ +++ I + + Sbjct: 19 EYLRSER--ELSLHTQQNYKRQLSTIAEQLVEMQVTSWQQLDAGWVRQIASKGMRSGLKA 76 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---WS 187 SS L+++R + V Q + NP V PK+ + ++M Q S Sbjct: 77 SSLGMRLSALRSFLDFLVFQGDLKANPAKGVSAPKKARPLPKNLDVDEMDQLLSVEGDDP 136 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------ELP 238 + R E + +GLR S+ ++ +Q ++ G + + Sbjct: 137 LSIRDRAMMELMYGAGLRLSELVGLNLKDIQLTKGDLRVIGKGDKERIVPFSGLAKEWVG 196 Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATI 296 + + + F++ +++ + K V + + H +R AT Sbjct: 197 NWLKVRATLAHSDEPALFVSKRGMRISNRNVQKRMEEWGQKQAVSSHINPHKLRHSFATH 256 Query: 297 SADAGATAHELMATYGWKTVDQAETYTK 324 ++ + G + + YT Sbjct: 257 MLESSGDLRAVQELLGHANLSTTQIYTH 284 >gi|150026173|ref|YP_001296999.1| integrase/recombinase [Flavobacterium psychrophilum JIP02/86] gi|149772714|emb|CAL44197.1| Integrase/recombinase [Flavobacterium psychrophilum JIP02/86] Length = 347 Score = 117 bits (292), Expect = 3e-24, Method: Composition-based stats. Identities = 37/252 (14%), Positives = 80/252 (31%), Gaps = 17/252 (6%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR----SGVESRKHTPSSAIQFLTSM 140 + ++ ++ + +IT + + + K + S Q + ++ Sbjct: 85 KRYSPSTIKTYTEALQSFLLFFDQKPITEITNQDVIVYNNEYILKNKLSASYQNQIVNAI 144 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL 200 ++ FK +++ + ++ + RPKR +KE+++ S + + + Sbjct: 145 KLYFK-TIKEVKIEVD---KIHRPKRSKLLPNVLSKEEIKLILEAHS-NIKHKTMLSLIY 199 Query: 201 YSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPD----GFMKLLAMTPIGKET 254 GLR S+ + I I+ K L + + Sbjct: 200 SCGLRRSELLHLKPTDIDSKRGIVIIRQSKGKKDRIAPLSPKILVMLREYYSNYKPKSWL 259 Query: 255 FFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYG 312 F + + K KA + K S H +R AT ++G + G Sbjct: 260 FEGQIPGETYSEKSLQNVLKQALEKAKIAKPVSLHWLRHSYATHLLESGTDLRYIQELLG 319 Query: 313 WKTVDQAETYTK 324 + E YT Sbjct: 320 HSSTKTTEIYTH 331 >gi|190410733|ref|YP_001966071.1| putative integrase [Thermus sp. 4C] gi|148608607|gb|ABQ95627.1| putative integrase [Thermus sp. 4C] Length = 386 Score = 117 bits (292), Expect = 3e-24, Method: Composition-based stats. Identities = 55/284 (19%), Positives = 99/284 (34%), Gaps = 34/284 (11%) Query: 86 SLAVNSRISF----ESYFDQIIRKSGDFD-YRKITTKHIRSGVESRKHTPSSAIQFLTSM 140 + + + + + G + ++ ++HIR+ + SR+ +P A + L S+ Sbjct: 97 GRSPRTAKEYLMDAGLFARWFRERHGRPPRFEEVGSQHIRAFLASREVSPHRAGRVLASL 156 Query: 141 RVLFKWAVRQEYVA--INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF-- 196 R LF++ E + +P V+RPK T ++ + + PR+A Sbjct: 157 RKLFRYLAEVEGLPLLKDPTEGVKRPKLPRRLPVYLTPPEVARLLQAAYQNRSPRVALRD 216 Query: 197 ----EFLLYSGLRCSDSCRAGVQHL--QNNIFS--IKTQKTGTIITVELPDGFMKLLA-- 246 FL +GLR S++ L Q+ I K G V L + L Sbjct: 217 WALLAFLYGTGLRLSEALALTYADLTYQDGIPHAIRVQGKGGKERVVVLSPTAQRALHQW 276 Query: 247 ----------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN----KSAHGVRKF 292 +P N + +A K A +AG+ + H +R Sbjct: 277 LKHRNLEGHPTSPYIWSHTTGPNRGKPFSARAVEAMVKRVARRAGLKDWRRITPHKLRHS 336 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336 A+ +AG E+ G ++ + Y R RL Sbjct: 337 YASALVEAGRGIDEVKELLGHSSISTTQVYVH-VSRKRLEEAAR 379 >gi|70726663|ref|YP_253577.1| hypothetical protein SH1662 [Staphylococcus haemolyticus JCSC1435] gi|82582336|sp|Q4L5V4|XERC_STAHJ RecName: Full=Tyrosine recombinase xerC gi|68447387|dbj|BAE04971.1| xerC [Staphylococcus haemolyticus JCSC1435] Length = 297 Score = 117 bits (292), Expect = 3e-24, Method: Composition-based stats. Identities = 37/266 (13%), Positives = 97/266 (36%), Gaps = 22/266 (8%) Query: 85 GSLAVNSRISFESYF---DQIIRKSGDFDYRKITTKHIRSGVE---SRKHTPSSAIQFLT 138 + + ++ S+ + + + + R K R+ + S+ ++ + ++ Sbjct: 16 RNFSAHTLKSYHDDLVQFNHFLEQ-ELINLRTFEYKDARNYLSYLYSQNLKRTTVSRKIS 74 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF----KSFWSEGSQPRL 194 ++R +++ + Q+ INP + + PK++ + + +E+M+ +G + R+ Sbjct: 75 TLRTFYEFWMTQDETIINPFVQLVHPKKENYLPQFFYEEEMEALFETVAKDTKKGLRDRV 134 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE--------LPDGFMKLL 245 E L +G+R S+ ++ + ++ +K K V + + Sbjct: 135 ILELLYATGIRVSELVNIQLKDIDMSLPGVKVLGKGNKERFVPFGEFCRQSIEQYLREFK 194 Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATK-AGV-NKSAHGVRKFSATISADAGAT 303 + +N + + + AGV H +R AT + GA Sbjct: 195 PIQHTKHSFLLVNMNGAPITERGVRYVLNDVVKRTAGVTEIHPHKLRHTFATHLLNQGAD 254 Query: 304 AHELMATYGWKTVDQAETYTKGADRI 329 + + G + YT +++ Sbjct: 255 LRTVQSLLGHVNLSTTGRYTHVSNQQ 280 >gi|261210165|ref|ZP_05924462.1| tyrosine recombinase XerC [Vibrio sp. RC341] gi|260840705|gb|EEX67254.1| tyrosine recombinase XerC [Vibrio sp. RC341] Length = 310 Score = 117 bits (292), Expect = 3e-24, Method: Composition-based stats. Identities = 34/260 (13%), Positives = 90/260 (34%), Gaps = 20/260 (7%) Query: 85 GSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIRSGV---ESRKHTPSSAIQFLT 138 L++ ++ +++ + + + + G ++ ++ +R V + + SS L+ Sbjct: 28 KGLSLYTQRNYKQQLETMARYLAQMGLANWSQLDAGWVRQLVVLGKRKGMKASSIATRLS 87 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQPRLA 195 S+R + + + + NP V P+++ + ++M Q + R Sbjct: 88 SLRSFLDFLILRGELQANPAKGVSAPRKQRPLPKNLDVDEMAQLLEVTDDDPLSIRDRAI 147 Query: 196 FEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVE-------LPDGFMKLLA 246 E + SGLR ++ V+ + ++ + + + Sbjct: 148 MELMYGSGLRLAELVSIDVKDINLRDGEIRVIGKGNKERKVWFAGQAQEWVGKWLKLRSQ 207 Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATA 304 + G+ F++ +++ K V + S H +R AT ++ Sbjct: 208 LADSGEPALFVSKLGTRISHRSVQKRMAEWGQKQAVASHISPHKLRHSFATHMLESSNNL 267 Query: 305 HELMATYGWKTVDQAETYTK 324 + G + + + YT Sbjct: 268 RAVQELLGHENIATTQIYTH 287 >gi|228950418|ref|ZP_04112578.1| DNA integration/recombination/invertion protein [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228809233|gb|EEM55694.1| DNA integration/recombination/invertion protein [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 369 Score = 117 bits (292), Expect = 3e-24, Method: Composition-based stats. Identities = 47/312 (15%), Positives = 106/312 (33%), Gaps = 38/312 (12%) Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVE 124 TL+ ++ + + S+ ++ + + ++ + +I G K+ HI+ + Sbjct: 60 PSKVTLEDYLNHWLEIKS-MSIERSTFVGYRAFLNQHVIPSIGMVALHKLNVMHIQKCYK 118 Query: 125 SRKHTPSSAIQFLTSMRVL---FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 + + L R+L AV+Q ++ NP E PK++ I+ WT+E++++ Sbjct: 119 TAIDKGIANNSVLLMHRILKSALNLAVKQNIISRNPADFAEIPKKERTSIQTWTEEEVKK 178 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--------------NNIFSIKTQ 227 F S+ S+ + + + +G+R + Q + +N + Sbjct: 179 FL-LHSQESRYHIGYLLAITTGMRMGEVLGLRWQDVDFEKHTVTINQTSGHDNKIKKTAK 237 Query: 228 KTGTIITVELPDGFMKLLAMTPI--------------GKETFFINNDKQKMNATQFSIWF 273 + T+ +P ++ L + + N + F F Sbjct: 238 TNSSKRTIPVPKETIECLKKHKVLINQEKLRLGSAYQDFDLINCNEFGMIIKKANFRKNF 297 Query: 274 KAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRL 331 AGV + H +R ATI G + G + Y+ + Sbjct: 298 IRAIHNAGVKEIKFHDLRHTHATILLKQGVNPKIISERLGHTDISMTLSVYSHVL--PNM 355 Query: 332 GIKNSRRISSVV 343 + + + Sbjct: 356 QEEAVKNFGKSI 367 >gi|254499439|ref|ZP_05112100.1| putative phage integrase family protein [Legionella drancourtii LLAP12] gi|254351338|gb|EET10212.1| putative phage integrase family protein [Legionella drancourtii LLAP12] Length = 326 Score = 117 bits (292), Expect = 4e-24, Method: Composition-based stats. Identities = 47/304 (15%), Positives = 103/304 (33%), Gaps = 33/304 (10%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFES--------YFDQIIRKSGDFDYRKITTKHIRSGV 123 L++ ++ + L+ +S S+ D ++ + + R V Sbjct: 25 DGLLNSFKATLEQQDLSESSISSYIQGINVFTTWALDFYQQEVCLLEITANDLRAYREYV 84 Query: 124 ES-RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK-TEGIRPWTKEDMQQ 181 + PS+ + ++ + WA + + NP ++ KR T K+++ Sbjct: 85 SKILRRKPSTINHHIQVLKRFYAWAAKTNLIPDNPASAIHFVKRATTTKPNALNKDEIHA 144 Query: 182 FKSF-----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTI 232 + + LL SGLR + ++ + ++ ++ K Sbjct: 145 LLRASGLSTHGLALRNYAIVQLLLQSGLRVGELNNLLMKDVVIRERSGCVNVVDGKGRKH 204 Query: 233 ITVELPDGFMKLLAM------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-- 284 + L + L + + F ++ + A +A + + Sbjct: 205 REIPLNSIARRALTRYLETRDSLGSDDILFTTKRGEQGTIRALQALISSLAKRANITRIN 264 Query: 285 -SAHGVRKFSATISADA--GATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341 +AH +R AT A G EL G ++V+ YTK A + +L ++ R Sbjct: 265 VTAHTLRHTFATQFLQANPGCLV-ELAMLMGHESVNTTAIYTK-ASKEKLA-EHMERSGV 321 Query: 342 VVDS 345 +D+ Sbjct: 322 SIDA 325 >gi|303239825|ref|ZP_07326348.1| integrase family protein [Acetivibrio cellulolyticus CD2] gi|302592535|gb|EFL62260.1| integrase family protein [Acetivibrio cellulolyticus CD2] Length = 351 Score = 117 bits (292), Expect = 4e-24, Method: Composition-based stats. Identities = 40/252 (15%), Positives = 88/252 (34%), Gaps = 11/252 (4%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLF 144 + +V ++ ++ + +++ + I I+ + SA ++ Sbjct: 85 RNYSVKTQKAYLGHVRRLL-QFHKKCIDNIDKDDIKLYLLRLVDANKSAAYIDQAVSAFK 143 Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGL 204 + + + + ++RPKR+ + ++ + + R + +GL Sbjct: 144 FLYIDLKNID-DVDFDIKRPKREQKLPSVLNTNEVFKIIESVD-NLKHRAIIMLIYSAGL 201 Query: 205 RCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET---FFINN 259 R S++ ++ + N+ IK K L + ++LL F Sbjct: 202 RVSEAANLRIEDIDSKRNLIHIKGAKGKKDRYTLLSNAMLELLRQYFKIYRPECWLFEGQ 261 Query: 260 DK-QKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTV 316 + + + F+ A KAGV K S H +R AT + G + G + Sbjct: 262 NGEKHITVRSIQKVFEKAAFKAGVKKKVSVHTLRHSFATHLLENGTDLRYIQELLGHASP 321 Query: 317 DQAETYTKGADR 328 E YT ++R Sbjct: 322 STTEIYTHVSER 333 >gi|16127236|ref|NP_421800.1| integrase/recombinase XerD [Caulobacter crescentus CB15] gi|221236037|ref|YP_002518474.1| integrase/recombinase [Caulobacter crescentus NA1000] gi|34223000|sp|Q9A437|XERD_CAUCR RecName: Full=Tyrosine recombinase xerD gi|13424644|gb|AAK24968.1| integrase/recombinase XerD [Caulobacter crescentus CB15] gi|220965210|gb|ACL96566.1| integrase/recombinase (XerD/RipX family) [Caulobacter crescentus NA1000] Length = 305 Score = 117 bits (292), Expect = 4e-24, Method: Composition-based stats. Identities = 44/268 (16%), Positives = 97/268 (36%), Gaps = 26/268 (9%) Query: 85 GSLAVNSRISFESYFDQ----IIRKSGDF-DYRKITTKHIRSGVESRKHTPSSAIQFLTS 139 + A N+ ++ + + R D D T + + +R +P++A + ++ Sbjct: 19 RAAARNTLTAYGKDLEDARGFLSRSGHDLHDADAETIEAYFQDLGARGLSPATAARRRSA 78 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-----GSQPRL 194 +R +++ + + + +P V PK + ++++++ + S G + Sbjct: 79 VRQFYRFVLGEGWRTDDPSRRVAAPKAGRPLPKVLERDEIERLLAAASAKDSAQGLRLAC 138 Query: 195 AFEFLLYSGLRCSDSCRAGVQHL-QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKE 253 E + SGLR S+ + L ++ + I K G L D + + + Sbjct: 139 MIELIYASGLRISELLALPLLALARDPAYLIVKGKGGKERLAPLNDAARAAVKAYLVERP 198 Query: 254 TFFINNDK------------QKMNATQFSIWFKAKATKAGVNK---SAHGVRKFSATISA 298 F K ++ + + A AG+++ S H +R AT Sbjct: 199 AFLPKGQKDSPWLFPSRGATGRLTPRRVGQLLEDAAIAAGIDRQKVSPHVLRHAFATHLL 258 Query: 299 DAGATAHELMATYGWKTVDQAETYTKGA 326 + GA + G + + YT A Sbjct: 259 EGGADLRVIQTLLGHADIATTQIYTHVA 286 >gi|328541970|ref|YP_004302079.1| Tyrosine recombinase XerD [Polymorphum gilvum SL003B-26A1] gi|326411720|gb|ADZ68783.1| Tyrosine recombinase XerD [Polymorphum gilvum SL003B-26A1] Length = 308 Score = 117 bits (292), Expect = 4e-24, Method: Composition-based stats. Identities = 44/276 (15%), Positives = 85/276 (30%), Gaps = 31/276 (11%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI---QFLTSMR 141 A N+ S+ D G R T + + + + +A + L+++R Sbjct: 19 RGAAHNTLDSYRRDLDDFAAFLGTTATRDATAEDVSAYLSDLAARGFAASSQARRLSALR 78 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ------FKSFWSEGSQPRLA 195 FK+ + +P ++ PK++ R ++ ++ + F + + R Sbjct: 79 QYFKFLYAEGERGDDPTRTLASPKKRQGLPRILSEAEVDRLIEAACFDATLEHETPGRAL 138 Query: 196 --------FEFLLYSGLRCSDSCRAGVQH-LQNNIFSIKTQKTGTIITVELPDGFMKLLA 246 E L +GLR S+ V L++ K G V L + + Sbjct: 139 RAQRLYTLLEVLYATGLRVSELVALPVGAALRDARLIGIRGKGGKERLVPLSPRAQEAMR 198 Query: 247 M--------TPIGKETFFINNDK--QKMNATQFSIWFKAKATKAGVNK---SAHGVRKFS 293 + + F+ K A G++ S H +R Sbjct: 199 AYVARRNAEGAYKGSPWLFPSHGESGHFTRQAFARDLKDLARAVGLDAAKVSPHVLRHAF 258 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 A+ GA + G + + YT D Sbjct: 259 ASHLLQNGADLRVVQQLLGHADISTTQIYTHVLDER 294 >gi|153803069|ref|ZP_01957655.1| tyrosine recombinase XerC [Vibrio cholerae MZO-3] gi|124121388|gb|EAY40131.1| tyrosine recombinase XerC [Vibrio cholerae MZO-3] Length = 312 Score = 117 bits (292), Expect = 4e-24, Method: Composition-based stats. Identities = 38/278 (13%), Positives = 94/278 (33%), Gaps = 21/278 (7%) Query: 68 PTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIR---KSGDFDYRKITTKHIRSGV 123 P L + + H L++ ++ +++ + + + + G + ++ + +R V Sbjct: 10 PDALAQPLERFYAYLHTEKGLSLYTQRNYKQQLETMTQYLVQVGLTHWTQLDSAWVRQLV 69 Query: 124 ESRKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 K SS L+S+R + + + + NP V P+++ + ++M Sbjct: 70 MQGKRQGMKASSIATRLSSLRSFLDFLILRGELQANPAKGVSAPRKQRTLPKNLDVDEMA 129 Query: 181 QFKSFW---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI---IT 234 Q + R E + +GLR ++ V+ + + I+ G + Sbjct: 130 QLLEVTDDDPLSIRDRAIMELMYGAGLRLAELVSIDVKDVNLSEGEIRVIGKGNKERKVW 189 Query: 235 V------ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSA 286 + + + F++ +++ K V + S Sbjct: 190 FAGQAQEWVGKWLKLRSQLADSAETALFVSKLGTRISHRSVQKRMAEWGQKQAVASHISP 249 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R AT ++ + G + + + YT Sbjct: 250 HKLRHSFATHMLESSNNLRAVQELLGHENIATTQIYTH 287 >gi|229525024|ref|ZP_04414429.1| tyrosine recombinase XerC [Vibrio cholerae bv. albensis VL426] gi|229338605|gb|EEO03622.1| tyrosine recombinase XerC [Vibrio cholerae bv. albensis VL426] Length = 311 Score = 117 bits (292), Expect = 4e-24, Method: Composition-based stats. Identities = 38/278 (13%), Positives = 93/278 (33%), Gaps = 21/278 (7%) Query: 68 PTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIR---KSGDFDYRKITTKHIRSGV 123 P L + + H L++ ++ +++ + + + + G + ++ +R V Sbjct: 10 PDALAQPLERFYAYLHTEKGLSLYTQRNYKQQLETMTQYLVQVGLTHWTQLDAAWVRQLV 69 Query: 124 ESRKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 K SS L+S+R + + + + NP V P+++ + ++M Sbjct: 70 MQGKRQGMKASSIATRLSSLRSFLDFLILRGELQANPAKGVSAPRKQRTLPKNLDVDEMA 129 Query: 181 QFKSFW---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI---IT 234 Q + R E + +GLR ++ V+ + + I+ G + Sbjct: 130 QLLEVTDDDPLSIRDRAIMELMYGAGLRLAELVSIDVKDVNLSEGEIRVIGKGNKERKVW 189 Query: 235 V------ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSA 286 + + + F++ +++ K V + S Sbjct: 190 FAGQAQEWVGKWLKLRSQLADSAETALFVSKLGTRISHRSVQKRMAEWGQKQAVASHISP 249 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R AT ++ + G + + + YT Sbjct: 250 HKLRHSFATHMLESSNNLRAVQELLGHENIATTQIYTH 287 >gi|121728305|ref|ZP_01681336.1| tyrosine recombinase XerC [Vibrio cholerae V52] gi|153214849|ref|ZP_01949657.1| tyrosine recombinase XerC [Vibrio cholerae 1587] gi|153826279|ref|ZP_01978946.1| tyrosine recombinase XerC [Vibrio cholerae MZO-2] gi|254226604|ref|ZP_04920185.1| tyrosine recombinase XerC [Vibrio cholerae V51] gi|254291937|ref|ZP_04962718.1| tyrosine recombinase XerC [Vibrio cholerae AM-19226] gi|297581831|ref|ZP_06943752.1| tyrosine recombinase XerC [Vibrio cholerae RC385] gi|121629435|gb|EAX61864.1| tyrosine recombinase XerC [Vibrio cholerae V52] gi|124115092|gb|EAY33912.1| tyrosine recombinase XerC [Vibrio cholerae 1587] gi|125620876|gb|EAZ49229.1| tyrosine recombinase XerC [Vibrio cholerae V51] gi|149739947|gb|EDM54126.1| tyrosine recombinase XerC [Vibrio cholerae MZO-2] gi|150422147|gb|EDN14113.1| tyrosine recombinase XerC [Vibrio cholerae AM-19226] gi|297533925|gb|EFH72765.1| tyrosine recombinase XerC [Vibrio cholerae RC385] Length = 311 Score = 117 bits (292), Expect = 4e-24, Method: Composition-based stats. Identities = 38/278 (13%), Positives = 94/278 (33%), Gaps = 21/278 (7%) Query: 68 PTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIR---KSGDFDYRKITTKHIRSGV 123 P L + + H L++ ++ +++ + + + + G + ++ + +R V Sbjct: 10 PDALAQPLERFYAYLHTEKGLSLYTQRNYKQQLETMTQYLVQVGLTHWTQLDSAWVRQLV 69 Query: 124 ESRKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 K SS L+S+R + + + + NP V P+++ + ++M Sbjct: 70 MQGKRQGMKASSIATRLSSLRSFLDFLILRGELQANPAKGVSAPRKQRTLPKNLDVDEMA 129 Query: 181 QFKSFW---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI---IT 234 Q + R E + +GLR ++ V+ + + I+ G + Sbjct: 130 QLLEVTDDDPLSIRDRAIMELMYGAGLRLAELVSIDVKDVNLSEGEIRVIGKGNKERKVW 189 Query: 235 V------ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSA 286 + + + F++ +++ K V + S Sbjct: 190 FAGQAQEWVGKWLKLRSQLADSAETALFVSKLGTRISHRSVQKRMAEWGQKQAVASHISP 249 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R AT ++ + G + + + YT Sbjct: 250 HKLRHSFATHMLESSNNLRAVQELLGHENIATTQIYTH 287 >gi|309775658|ref|ZP_07670657.1| integrase/recombinase XerD [Erysipelotrichaceae bacterium 3_1_53] gi|308916564|gb|EFP62305.1| integrase/recombinase XerD [Erysipelotrichaceae bacterium 3_1_53] Length = 304 Score = 117 bits (292), Expect = 4e-24, Method: Composition-based stats. Identities = 50/290 (17%), Positives = 100/290 (34%), Gaps = 32/290 (11%) Query: 77 EYRKSAHWGSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIRSGVESRKHTP--- 130 +Y S + S +V++R +++ + I + G + + + + + S + Sbjct: 10 QYMDSLN--SGSVHTRDAYQRDIREFISFLQAEGVEELQDADRILVMNYIASLREKSGVS 67 Query: 131 -----SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 S+ + L+S+R +++ +A NP L + PKR ++M F S Sbjct: 68 GEMKNSTIARKLSSLRSFYRYLNEYVGIAQNPFLYFKTPKRSKRIPEFLFYDEMDTFLSS 127 Query: 186 W----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVEL--- 237 + +G + R FE + GLR S++ ++ + T K V Sbjct: 128 FALDTPDGLRDRAMFELMYACGLRVSEAASLRLRDIDLQERILTITGKGNKQRIVPFYAL 187 Query: 238 --------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKAT--KAGVNKSAH 287 L + FIN + + + A K V+ H Sbjct: 188 AGELVERYLQQVRPLWMQPSQEHDIVFINQRGKGLTTRGIQYRMQVAAAGCKLQVHVHPH 247 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNS 336 R AT D GA + G ++ + Y +R++ ++ Sbjct: 248 MFRHSFATHLLDNGADLRVVQELLGHSSLSTTQVYVHVTQERLKKAYTHA 297 >gi|228964325|ref|ZP_04125444.1| Integrase [Bacillus thuringiensis serovar sotto str. T04001] gi|228795422|gb|EEM42910.1| Integrase [Bacillus thuringiensis serovar sotto str. T04001] Length = 376 Score = 117 bits (292), Expect = 4e-24, Method: Composition-based stats. Identities = 51/322 (15%), Positives = 99/322 (30%), Gaps = 44/322 (13%) Query: 45 PAYMSALTGSTPKREYINSPRKKPT----TLKWLISEYRKSAHWGSLAVNSRISFESYF- 99 ++ + TG K + + + T + L + Y + LA + + + YF Sbjct: 34 RRFILSRTGKRGKAKLGRTSIEVTQIEIYTFQELFNIYMFAKEAEGLAKRTLENKKGYFL 93 Query: 100 ---DQIIRKSGDFDYRKITTKHIRSGVESRKH--------------------TPSSAIQF 136 + + D + T IR + K+ + S Sbjct: 94 VFHRYLEERHEDVTPNTLDTNTIREFLYYLKNDHIKHKNNHCIKEKYKSIGVSVSYINTI 153 Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS----FWSEGSQP 192 + MR + + V +EYV +NP ++ K + I + + ++ G + Sbjct: 154 MKHMRAFYNFLVEEEYVQLNPFTKIKSLKEAQDNIEALSVDQLKTLLKQPNQRTYAGFRD 213 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTI--ITVELPDGFMKLLAMT 248 + L +G+R S++ + L NI +K T V + KLL Sbjct: 214 YVLMMLLADTGMRISEALNLQQEDLDFKTNIIELKGTNTKNRQTRYVPISQKTSKLLREL 273 Query: 249 PI-----GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKFSATISADA 300 + F ++ +F K +G+ S H R A Sbjct: 274 LVEIEEFDTLHIFATVYGNAIDPARFRQRLKMYGHNSGIKGVRVSPHTFRHTFAKYYLLN 333 Query: 301 GATAHELMATYGWKTVDQAETY 322 L G +++ Y Sbjct: 334 NGDVMTLQKILGHSSIEMVRKY 355 >gi|307942508|ref|ZP_07657856.1| tyrosine recombinase XerD [Roseibium sp. TrichSKD4] gi|307774147|gb|EFO33360.1| tyrosine recombinase XerD [Roseibium sp. TrichSKD4] Length = 307 Score = 117 bits (292), Expect = 4e-24, Method: Composition-based stats. Identities = 39/276 (14%), Positives = 82/276 (29%), Gaps = 31/276 (11%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP---SSAIQFLTSMR 141 A N+ S+ D + + + T I + + +S + L++++ Sbjct: 18 RGAAENTLQSYRRDLDDFAEFTAPQNPSAVNTDRISAYLRDLSLRGFAETSQARRLSALK 77 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK--------------SFWS 187 FK+ +P ++ PK++ + + +++ + + Sbjct: 78 QYFKFLYADGIRTDDPTRTLSAPKKRQALPKVLSIDEVDKLIGEAQQAATKKQDSPAKQL 137 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHL-QNNIFSIKTQKTGTIITVELPDGFMKLLA 246 + E L +GLR S+ V ++ T K G V L K + Sbjct: 138 RAQRLYTLLEVLYATGLRVSELVALPVTAAQRDQRLIEVTGKGGKERLVPLSPAAQKAMR 197 Query: 247 MTPIGK--------ETFFINNDKQ--KMNATQFSIWFKAKATKAGVN---KSAHGVRKFS 293 + + + + F K A ++ S H +R Sbjct: 198 DYIRQRAELGAYATSPWLFPSHGKSGHFTRQAFGRDLKDLAVDTKIDTDKVSPHVLRHAF 257 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 A+ GA + G + + YT D Sbjct: 258 ASHLLQNGADLRVVQQLLGHADISTTQIYTHVLDER 293 >gi|241667911|ref|ZP_04755489.1| phage integrase family protein [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254876451|ref|ZP_05249161.1| phage integrase [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254842472|gb|EET20886.1| phage integrase [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 293 Score = 117 bits (292), Expect = 4e-24, Method: Composition-based stats. Identities = 38/264 (14%), Positives = 89/264 (33%), Gaps = 18/264 (6%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI---RSGVESRKHTPSSAIQFLTSMR 141 + + + ++ Q+ D D K+ I + ++ ++ + + L+S+R Sbjct: 18 KNYSQETINNYRRDLLQLNSSIVDKDITKLENNDILMWVKKLHAQGNSSKTLQRKLSSLR 77 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG---SQPRLAFEF 198 F + + E + NP ++ PK + + +++ ++ F+ Sbjct: 78 SFFNFLINSELIKNNPTTGIKAPKSSKKLPKAVNTDELAYLLDIKPSNNIETRDIACFDL 137 Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT---------GTIITVELPDGFMKLLAMTP 249 L G+R S+ ++ + N SI+ G+ + L + Sbjct: 138 LYSCGIRLSELSSIELKDININQKSIRVIGKGNKERVVYFGSKTLINLNRWL-NIRDTYS 196 Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATK-AGVNKSAHGVRKFSATISADAGATAHELM 308 FI+ + + + + A K A + H +R AT D+ + Sbjct: 197 PKCNYLFISQNGEHLTNRSIQKRIEIFAKKYATKHIHPHMLRHSFATHVLDSSKDLLAVK 256 Query: 309 ATYGWKTVDQAETYTKGADRIRLG 332 G + + YT + +L Sbjct: 257 DLLGHADISSTQIYTH-LNFQQLA 279 >gi|160888416|ref|ZP_02069419.1| hypothetical protein BACUNI_00833 [Bacteroides uniformis ATCC 8492] gi|156862093|gb|EDO55524.1| hypothetical protein BACUNI_00833 [Bacteroides uniformis ATCC 8492] Length = 294 Score = 117 bits (292), Expect = 4e-24, Method: Composition-based stats. Identities = 41/263 (15%), Positives = 95/263 (36%), Gaps = 23/263 (8%) Query: 85 GSLAVNSRISFESYFDQI----IRKSGDFDYRKITTKHIRSGVESRKHTP---SSAIQFL 137 + + + + + ++ GD + + +R + S ++ + L Sbjct: 15 RNYSKGTVEYYRADILELQRFGEEMLGDLTPLDVDAELVREWIASLMDKGLASNTINRKL 74 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS-----EGSQP 192 +S+R +K+ +R+ VA++P V PK+K + +M + EG + Sbjct: 75 SSVRTYYKFLLRRGKVAVDPLRKVTGPKKKKPLPVFLREGEMNRLLDDMDFGEGFEGCRD 134 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLA----- 246 + E +G+R S+ + + + +K T K + + + + Sbjct: 135 HMIIEMFYATGMRLSELIGLDDKDVDFSASLVKVTGKRNKQRLIPFDEELGRSMREYVNV 194 Query: 247 ---MTPIGKETFFINNDKQKMNATQFSIWFKA--KATKAGVNKSAHGVRKFSATISADAG 301 P+ + FF+ + +++ + K +S H +R AT + G Sbjct: 195 RNEAVPVRSDAFFVRKNGKRLYRGIVACLVKRNLSKVVTVKKRSPHVLRHTFATAMLNNG 254 Query: 302 ATAHELMATYGWKTVDQAETYTK 324 A + G +++ E YT Sbjct: 255 ADLGSIKELLGHESLATTEVYTH 277 >gi|194014676|ref|ZP_03053293.1| tyrosine recombinase XerC [Bacillus pumilus ATCC 7061] gi|194013702|gb|EDW23267.1| tyrosine recombinase XerC [Bacillus pumilus ATCC 7061] Length = 305 Score = 117 bits (292), Expect = 4e-24, Method: Composition-based stats. Identities = 45/277 (16%), Positives = 92/277 (33%), Gaps = 28/277 (10%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV------ESRK 127 L EY + + + + + ++ +R + + Sbjct: 10 LFIEYLQIE--KNYSALTISGYTEAIEEFVRFMNVQGIDGFEEVSYQDTRIYLTEAYEKG 67 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-- 185 T + + ++++R +K+ +R++ V NP L V PK+ +E++++ + Sbjct: 68 LTRRTISKKVSALRSFYKFLLREQLVKENPFLLVSLPKQDKRIPSFLYEEELKELFTVSD 127 Query: 186 --WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE------ 236 G + + E L +G+R S+ C L ++ ++ K V Sbjct: 128 VSTPLGQRNQAILELLYATGMRVSELCSLKESDLDLSMDTVLVHGKGSKQRYVPFGSYAH 187 Query: 237 ------LPDGFMKLLAMT-PIGKETFFINNDKQKMNATQFSIWFKAKATKAG--VNKSAH 287 L DG +KL A F+N + KA ++ H Sbjct: 188 EALITYLEDGRLKLKAKGNDRADAYVFLNQRGAPLTDRGVRFILTELMKKASGTLHIHPH 247 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 +R AT + GA + G + + YT Sbjct: 248 MLRHTFATHLLNEGADLRSVQELLGHSNLSSTQVYTH 284 >gi|260911952|ref|ZP_05918516.1| tyrosine type site-specific recombinase [Prevotella sp. oral taxon 472 str. F0295] gi|260633899|gb|EEX52025.1| tyrosine type site-specific recombinase [Prevotella sp. oral taxon 472 str. F0295] Length = 386 Score = 117 bits (292), Expect = 4e-24, Method: Composition-based stats. Identities = 43/236 (18%), Positives = 86/236 (36%), Gaps = 15/236 (6%) Query: 121 SGVESRKHTPSSAIQFLT---SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177 + K P + L+ +R A + + NP +E K + T E Sbjct: 155 DYRKRIKDKPLARNSKLSYFNKLRACLNQAFEERVIPYNPMRGIESFKPEDGMRMYLTLE 214 Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQKTGTII 233 ++++ E + AF F +GLR SD R + K +KT Sbjct: 215 EVRRLAQTDCEYPNIKRAFLFSCLTGLRRSDIIRMTWSEVFQQGEYTRIIFKQKKTNGQE 274 Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRK 291 +++ +L+ +E F + T + + +AG+NK + H R Sbjct: 275 YLDITGQAAELMGKRGRPEEHVFDEIH----SPTCTNTAIREWVLRAGINKKITFHCARH 330 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347 A + D G + + G + + + Y K D+ + K I +++++++ Sbjct: 331 TFAVMMLDLGTDIYTVSKLLGHRELSTTQIYAKVLDKNK--QKAVSSIPNILENEN 384 >gi|152994022|ref|YP_001359743.1| phage integrase family site specific recombinase [Sulfurovum sp. NBC37-1] gi|151425883|dbj|BAF73386.1| site-specific recombinase, phage integrase family [Sulfurovum sp. NBC37-1] Length = 366 Score = 117 bits (292), Expect = 4e-24, Method: Composition-based stats. Identities = 50/330 (15%), Positives = 110/330 (33%), Gaps = 25/330 (7%) Query: 19 GKIIY-YFRKGHGRRIRLPYPHESTFIPAY--------MSALTGSTPKREYINSPRKKPT 69 K+ Y +R+ R + Y ++A+ + ++K Sbjct: 24 DKVYYIRYRENGKLREIKVGKYSEGIRENYCNQKLLETVNAIRLGEQPPIINATHKRKIV 83 Query: 70 TLKWLISEYRKSAHWGSLA-VNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH 128 T ++++Y KS + ++ ++S Q+ G D IT I + Sbjct: 84 TFDEIVTKYFKSKELHNKTNEQTKNRYKS---QLKEYIGSKDIYSITKNDILAIQTDMAQ 140 Query: 129 T--PSSAIQFLTSMRVLFKWAVRQEYVA-INPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + P + Q++ ++ ++ +A+ ++ + +NP ++ K + R + ++++ Sbjct: 141 SRAPKTVNQYIQFIKAVYNYAIAEDLFSGVNPVKGIKEQKIDNKRERFLSIDEIKALIEE 200 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKT----GTIITVELPD 239 E L L +G R + L NN+ ++ K G L + Sbjct: 201 VKENEDLYLFTLLSLSTGGRLGTIMAIAKKDLDFNNNMITLNDIKNEDTYGGFFDNTLKE 260 Query: 240 GFMKLLAMTPIGKETFFINNDK-QKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATI 296 +K A + +N ++ + + F H +R A+ Sbjct: 261 ILIKRTANLKPNDKLIVMNERTLRRQLSKVLTKLFNVGIDADDRKNRVVIHTLRHTFASQ 320 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGA 326 A G + K + Q Y K A Sbjct: 321 LAIKGTPIFTIQKLLNHKDIKQTLRYAKLA 350 >gi|325104990|ref|YP_004274644.1| integrase family protein [Pedobacter saltans DSM 12145] gi|324973838|gb|ADY52822.1| integrase family protein [Pedobacter saltans DSM 12145] Length = 293 Score = 117 bits (292), Expect = 4e-24, Method: Composition-based stats. Identities = 41/275 (14%), Positives = 98/275 (35%), Gaps = 26/275 (9%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH------IRSGVESRK 127 + + + + ++ +S+++ +Q + ++ H + S ++ +K Sbjct: 3 LERFFNYISFEKKYSAHTVLSYQTDINQYQDFLSVIEADILSATHRDVRNWVVSLMDDQK 62 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + + + +++++ L+ + +R+E + +NP V PK E + + Sbjct: 63 SS-RTVNRKISALKTLYSFLLREELIEVNPMQKVLAPKIAKTLPVFLETEKLNALLDYEG 121 Query: 188 ------EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG 240 EG + +L EFL +G+R S+ + + ++K K + + + Sbjct: 122 IFEEGFEGKRDKLILEFLFGTGVRLSELLGLREKDVDFGNKTVKVLGKGNKERIIPMSES 181 Query: 241 F----MKLLAMTPIG-----KETFFINNDKQKMNATQFSIWFKAK--ATKAGVNKSAHGV 289 L G + + N + K + KS H + Sbjct: 182 LICSIRDYLLKKKSGVIYNNSDALIVTNKGLQAYPEFIYRTVKRYLSIISSKEKKSPHVL 241 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 R AT +AGA + + G ++ + YT Sbjct: 242 RHTFATALLNAGADINAIKELLGHASLAATQVYTH 276 >gi|170754911|ref|YP_001781341.1| site-specific tyrosine recombinase XerC [Clostridium botulinum B1 str. Okra] gi|169120123|gb|ACA43959.1| site-specific recombinase, phage integrase family [Clostridium botulinum B1 str. Okra] Length = 326 Score = 117 bits (292), Expect = 4e-24, Method: Composition-based stats. Identities = 54/263 (20%), Positives = 108/263 (41%), Gaps = 24/263 (9%) Query: 96 ESYFDQI-IRKSGDFDYRKITTKHIRSGV----ESRKHTPSSAIQFLTSMRVLFKWAV-R 149 E+ F+ I I+ D D + I+ + + V R + + + + +++ F++ + Sbjct: 59 EAEFNDIEIKDISDEDIKNISLTDLFAFVSFVENYRNNGSYAKARKVATLKSFFRFLQGK 118 Query: 150 QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR--LAFEFLLYSGLRCS 207 + + NP L +E PK T ++ ++ S + R L GLR S Sbjct: 119 VKIIKENPALELESPKISKRNPVYLTLDESKRLLSSIDGKFKERDLCIVTMFLNCGLRLS 178 Query: 208 DSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA----------MTPIGKETFFI 257 + C + +++N+I ++ K TV L +K L + K+ F+ Sbjct: 179 ELCGINISNIKNDILTV-VGKGNKERTVYLNKACIKTLNDYLSVRKEMGEKIVDKDALFL 237 Query: 258 NNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKFSATISADAGA-TAHELMATYGW 313 + + ++N + K KAG++ S H +R +AT+ G L G Sbjct: 238 SKNYTRINKRSVEMLVKKYVKKAGLDGEKYSPHKLRHTAATLMYKHGGVDIRSLQMILGH 297 Query: 314 KTVDQAETYTK-GADRIRLGIKN 335 + + + YT +DR+R +K+ Sbjct: 298 ENISTTQIYTHVDSDRLREAVKS 320 >gi|15603566|ref|NP_246640.1| site-specific tyrosine recombinase XerC [Pasteurella multocida subsp. multocida str. Pm70] gi|34223005|sp|Q9CKC2|XERC_PASMU RecName: Full=Tyrosine recombinase xerC gi|12722110|gb|AAK03785.1| XerC [Pasteurella multocida subsp. multocida str. Pm70] Length = 295 Score = 117 bits (292), Expect = 4e-24, Method: Composition-based stats. Identities = 40/260 (15%), Positives = 91/260 (35%), Gaps = 21/260 (8%) Query: 85 GSLAVNSRISFESYFDQIIR---KSGDFDYRKITT---KHIRSGVESRKHTPSSAIQFLT 138 ++ ++ +++ +I+ ++G ++ +T + I + S L+ Sbjct: 16 RQVSPHTLTNYQRQLYRIVDILAENGITSWQAVTPSIVRFILAQSNKDGLKERSLALRLS 75 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS---FWSEGSQPRLA 195 +R F + V+Q+ + +NP V PK+ + E +QQ + + R Sbjct: 76 VLRRFFTYLVQQQDINVNPATGVSAPKQNRHLPKNIDAEQVQQLLNNDSKEPIDIRDRAI 135 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------ELPDGFMKLLA 246 E L SGLR S+ + + + ++ G + + + Sbjct: 136 LELLYSSGLRLSELQSLNLNSINTRVREVRVMGKGNKERIVPFGRYASHAIQQWLKVRIL 195 Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATA 304 P E F++ ++ + K G+ + + H +R AT +A + Sbjct: 196 FNP-KDEALFVSQLGNRLTHRAIQQRLEVWGIKQGLSSHLNPHKLRHSFATHMLEASSDL 254 Query: 305 HELMATYGWKTVDQAETYTK 324 + G + + YT Sbjct: 255 RAVQELLGHSNLSTTQIYTH 274 >gi|290477110|ref|YP_003470023.1| site-specific tyrosine recombinase [Xenorhabdus bovienii SS-2004] gi|289176456|emb|CBJ83265.1| site-specific tyrosine recombinase [Xenorhabdus bovienii SS-2004] Length = 304 Score = 116 bits (291), Expect = 4e-24, Method: Composition-based stats. Identities = 42/260 (16%), Positives = 89/260 (34%), Gaps = 20/260 (7%) Query: 85 GSLAVNSRISFESYF---DQIIRKSGDFDYRKITTKHIR--SGVESRKHTPSSAIQF-LT 138 L+ + ++ + + G +++ + +R + R S+++ L+ Sbjct: 23 RRLSPLTITNYRRHLVVLASMSLDMGIHEWQALDPAKVRMFASRSRRAGLQSASLALRLS 82 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---WSEGSQPRLA 195 S+R W V Q + NP +V P++K + +++ Q + + R Sbjct: 83 SLRTFLDWMVIQGELDANPAKAVSAPRKKRHLPKNMDVDEVNQLLNINLNDPLSVRDRTM 142 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMKLLAMT------ 248 E + +GLR S+ +HL+ K V + ++ L Sbjct: 143 MEVMYGAGLRLSELVGLDCRHLELASGEVWVQGKGSKERKVPVGRIALEWLQRWLEMREL 202 Query: 249 --PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATA 304 P F ++++A F+ + GVN H +R AT ++ Sbjct: 203 FEPEDNAVFISTKSGKRISARNVQKRFEQWGVRQGVNSHIHPHKLRHSFATHILESSGDL 262 Query: 305 HELMATYGWKTVDQAETYTK 324 + G + + YT Sbjct: 263 RAVQELLGHANLSTTQIYTH 282 >gi|215481987|ref|YP_002324169.1| Tyrosine recombinase xerC [Acinetobacter baumannii AB307-0294] gi|213988762|gb|ACJ59061.1| Tyrosine recombinase xerC [Acinetobacter baumannii AB307-0294] Length = 398 Score = 116 bits (291), Expect = 4e-24, Method: Composition-based stats. Identities = 45/296 (15%), Positives = 100/296 (33%), Gaps = 22/296 (7%) Query: 44 IPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII 103 + + + E P ++ Y SA + + I+ Sbjct: 79 MQRFHQRIAQGLAPFEDEVKPANTLREFA--LTIYMPSAEMR--KKSYKDDEAKLRMHIL 134 Query: 104 RKSGDFDYRKITT---KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160 GD+ + I + + + S+ T +S + + V+F A+ + + +NP Sbjct: 135 PVIGDYPFEDINAGMLNKLLTELRSKGLTNASINRVRALLSVMFNMAINHDLIQVNPVSK 194 Query: 161 VERPKRKTEGIRPWTKEDMQQF----KSFWSEGSQPRLAFEF---LLYSGLRCSDSCRAG 213 V + K + R +++++ + G + LL +G+R ++ Sbjct: 195 VSKFKENNQIERYLNAQEIKRLMDVLNAPHQHGIDNLIIVAIVKFLLLTGVRKREAMDMK 254 Query: 214 VQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFIN-NDKQKMN--ATQ 268 + ++ + K+G + L + +L P F N Q N Sbjct: 255 WTDVDLTTGVWLLGENKSGKARRITLNQDALAILHSLPQQHAFIFANPMTGQPFNDMRKT 314 Query: 269 FSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 F KA + + N H +R A+I+ ++G + + + G + + Y Sbjct: 315 FQSIMKAASIR---NIRIHDLRHNFASIAVNSGQSLYVVQHLLGHASPQTTQRYAH 367 >gi|88706575|ref|ZP_01104279.1| integrase [Congregibacter litoralis KT71] gi|88699287|gb|EAQ96402.1| integrase [Congregibacter litoralis KT71] Length = 440 Score = 116 bits (291), Expect = 4e-24, Method: Composition-based stats. Identities = 45/331 (13%), Positives = 89/331 (26%), Gaps = 53/331 (16%) Query: 53 GSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSR-ISFESYFDQIIRKSGDFDY 111 G + + L+ Y +SA + A +++ + + G Sbjct: 85 GRGADPLGEKQSTRNALNIDQLLDAYLESAKFAGKAESTQYMDKSRIKRHLRPLLGPVKV 144 Query: 112 RKITTKHIRSGVESRKHTPSS--------------------AIQFLTSMRVLFKWAVRQE 151 +++ +R + ++ A + + +F WA+ + Sbjct: 145 EQLSRDKVRRLFSDIRDGKTATVEKTSKKRGKARVTGGESVARSSVKLLSAIFTWAIEEG 204 Query: 152 YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-----------------SEGSQPRL 194 NPC V + T E + Sbjct: 205 LATENPCKGVNVGQSGVREAILETPEQYKSLFDALDRMQVSNIDPDDPGEVTPIPDAAAN 264 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK--------TGTIITVELPDGFMKLLA 246 A L ++G R S+ A + + ++ TG + LP ++ Sbjct: 265 AIRVLAFTGARKSEITEARWSWVNIDAGTLTVPPKSHKSGHITGKPKVIPLPSPARAVIE 324 Query: 247 MTPI---GKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADAG 301 F ++ + +AG+ H +R TI A G Sbjct: 325 SLTRHGEDDFVFPATRGGGGISLPS--KMWIQIRKEAGLPDGITNHSLRHSLGTIMAVQG 382 Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLG 332 A A ++MA G + + Y A R Sbjct: 383 AEAAQIMAALGHSQLSTTQRYIHIARDARAA 413 >gi|256751764|ref|ZP_05492637.1| integrase family protein [Thermoanaerobacter ethanolicus CCSD1] gi|256749292|gb|EEU62323.1| integrase family protein [Thermoanaerobacter ethanolicus CCSD1] Length = 307 Score = 116 bits (291), Expect = 4e-24, Method: Composition-based stats. Identities = 47/284 (16%), Positives = 106/284 (37%), Gaps = 34/284 (11%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSGVESRK 127 LK+ I ++ + + +L+ S ++ + I + G + + IT HI+S K Sbjct: 3 LKFAIQDFIEDRKFKNLSPVSINGYQRDLQEFYNWITQQGILNIQDITPHHIKSYFMHLK 62 Query: 128 H----TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 + P + LT++R F + V+++ + P +E+ K + I +T E + Q Sbjct: 63 NEKNNNPVTLNHKLTNLRAFFNYMVQEKILKETPVK-IEKQKTDVK-IEAFTDEQVYQML 120 Query: 184 SFWSE---------GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTI 232 ++ + + L L +G+R S+ + + N+ ++ K+ Sbjct: 121 RYFRKLKQREKTFYAYRNYLIILTFLGTGIRLSEIVNLKWRDIDLINDKITV-YGKSRKQ 179 Query: 233 ITVELPDGFMKLLA----------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG- 281 T+ L + + + + F + K++++ + F+ G Sbjct: 180 RTIPLQERLREEFKEYYAFCKKNNINFTDDDYVFTDIRKKQLSKNAIHLVFRRLKKVMGW 239 Query: 282 --VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 V + H R A +G L G ++++ Y Sbjct: 240 KNVKLAPHTFRHTFAKNWILSGGDVFSLQRVLGHQSIEMTNRYV 283 >gi|238793576|ref|ZP_04637200.1| Tyrosine recombinase [Yersinia intermedia ATCC 29909] gi|238727166|gb|EEQ18696.1| Tyrosine recombinase [Yersinia intermedia ATCC 29909] Length = 276 Score = 116 bits (291), Expect = 4e-24, Method: Composition-based stats. Identities = 41/253 (16%), Positives = 85/253 (33%), Gaps = 19/253 (7%) Query: 91 SRISFESYFDQIIR---KSGDFDYRKITTKHIRSGVESRKHTP---SSAIQFLTSMRVLF 144 + S+ ++ + G ++ + +RS V K SS L+++R Sbjct: 2 TITSYRRQLQALMEMGEQMGLMHWQTLDAAQVRSLVSRSKRAGLHSSSLALRLSALRSFL 61 Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQPRLAFEFLLY 201 W V Q + NP V P+ + +++ + + R E + Sbjct: 62 DWLVSQGVLQANPAKGVSTPRSGRHLPKNIDVDEVDKLLDIDLNDPLAVRDRAMLEVMYG 121 Query: 202 SGLRCSDSCRAGVQHLQNNIFSIKTQKTGT--------IITVELPDGFMKLLAMTPIGKE 253 +GLR S+ +H+ + G+ V +++L + + Sbjct: 122 AGLRLSELVGMNCKHVDLASGEVWVMGKGSKERKVPIGRTAVTWLAHWLELRELFEPVDD 181 Query: 254 TFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATY 311 F+ N ++++A F K GV + H +R AT ++ + Sbjct: 182 AIFLANTGKRISARNVQKRFAEWGVKQGVSSHIHPHKLRHSFATHMLESSGDLRAVQELL 241 Query: 312 GWKTVDQAETYTK 324 G + + YT Sbjct: 242 GHANLTTTQIYTH 254 >gi|118594103|ref|ZP_01551450.1| Tyrosine recombinase XerC [Methylophilales bacterium HTCC2181] gi|118439881|gb|EAV46508.1| Tyrosine recombinase XerC [Methylophilales bacterium HTCC2181] Length = 300 Score = 116 bits (291), Expect = 4e-24, Method: Composition-based stats. Identities = 43/273 (15%), Positives = 87/273 (31%), Gaps = 20/273 (7%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV---ESRK 127 K I +Y + L+ + S+ + + D + IR G+ ++ Sbjct: 4 KDYIEKYTDYIKFEKRLSALTIKSYLRDIRLLDSELQGKDLQSYQVDDIRRGISVFHAKG 63 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 S + L+S R F + + ++NP + ++ PK K + + + + S Sbjct: 64 INGKSLSRMLSSWRGFFDFLNHRYEFSLNPVMGIKAPKAKKLLPQTLSIDHAIKLVSITD 123 Query: 188 ---EGSQPRLAFEFLLYSGLRCSDSCRAGVQHL-QNNIFSIKTQKTGTIITVELPDGFMK 243 G + R E SGLR S+ + + + + K V + ++ Sbjct: 124 KSFLGLRDRAIMELFYSSGLRLSELAAMKLADINMDEQTASILGKGNKSRIVPIGSHALQ 183 Query: 244 LLAMTPI----------GKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRK 291 L + F++ + K A K G+ N H +R Sbjct: 184 ALNDWIVMRKKISDFNPRTTHLFLSEKGNALGVRSIQYRLKFWAIKQGIPENIHPHLLRH 243 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTK 324 A+ + + G + + YT Sbjct: 244 SFASHLLQSSQDLRAVQELLGHANISTTQIYTH 276 >gi|46143623|ref|ZP_00134812.2| COG4973: Site-specific recombinase XerC [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|190151161|ref|YP_001969686.1| tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|303250058|ref|ZP_07336260.1| site-specific tyrosine recombinase XerC [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|303253232|ref|ZP_07339381.1| site-specific tyrosine recombinase XerC [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|254799324|sp|B3GZ58|XERC_ACTP7 RecName: Full=Tyrosine recombinase xerC gi|189916292|gb|ACE62544.1| Tyrosine recombinase xerC [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|302647914|gb|EFL78121.1| site-specific tyrosine recombinase XerC [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|302651121|gb|EFL81275.1| site-specific tyrosine recombinase XerC [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 306 Score = 116 bits (291), Expect = 4e-24, Method: Composition-based stats. Identities = 36/259 (13%), Positives = 89/259 (34%), Gaps = 19/259 (7%) Query: 85 GSLAVNSRISFESYFDQIIR---KSGDFDYRKITTKHIRSGV---ESRKHTPSSAIQFLT 138 + ++ +++ + ++G ++++ + +R + + S L Sbjct: 23 KQASQHTLSNYQRQLLAVSDMLSQAGISTWQEVNSATVRWIIAQSNKQGLGAKSIALRLV 82 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS---FWSEGSQPRLA 195 ++R F + +RQE +++NP + ++ PK + E + Q + + Sbjct: 83 ALRQWFSYLIRQEKMSVNPAVGIKAPKASKRLPKNIDAEQIGQLLTSDSHEPSDLRDLAM 142 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMT------ 248 E + SGLR S+ + + ++ K V + ++ L Sbjct: 143 MELMYSSGLRLSELQGLDLGDMDLAGREVRLLGKGNKERIVPIGSKALEALNRWLAVRNQ 202 Query: 249 -PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAH 305 F+N +++ + + K G+ + H +R AT +A Sbjct: 203 FKPQDNAVFLNKRGGRLSHRSIQLVMQKWGEKQGLESHLHPHKLRHSFATHMLEASGDLR 262 Query: 306 ELMATYGWKTVDQAETYTK 324 + G + + YT Sbjct: 263 AVQELLGHSNLATTQIYTH 281 >gi|229060296|ref|ZP_04197663.1| DNA integration/recombination/invertion protein [Bacillus cereus AH603] gi|228719023|gb|EEL70639.1| DNA integration/recombination/invertion protein [Bacillus cereus AH603] Length = 369 Score = 116 bits (291), Expect = 4e-24, Method: Composition-based stats. Identities = 52/312 (16%), Positives = 106/312 (33%), Gaps = 38/312 (12%) Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVE 124 TLK ++ + + S+ ++ + ++ + +I G K+ HI+ + Sbjct: 60 PSKVTLKDYLNHWLEIKS-MSIEESTFACYRAFINQHVIPSIGMITLHKLNVMHIQKCYK 118 Query: 125 SRKHTPSSAIQFLTSMRVL---FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 S + L R+L AV+Q ++ NP E PK++ I+ WT+E++++ Sbjct: 119 SSIDKGITNNSILLMHRILKSSLNLAVKQNVLSRNPAAFAEIPKKEKTSIQTWTEEEVKK 178 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--------------NNIFSIKTQ 227 F S+ S+ + + + +G+R + Q + NN + Sbjct: 179 FL-LHSQESRYHIGYLLAITTGMRLGEVLGLRWQDVDFEKHTVTINQTSGHNNKIKKTAK 237 Query: 228 KTGTIITVELPDGFMKLLAMTPI--------------GKETFFINNDKQKMNATQFSIWF 273 + T+ +P ++ L I E N + F F Sbjct: 238 TNSSKRTIPVPKETIESLKKHKITINKEKLRLGSAYQDLELINCNEFGMVIKRATFRNHF 297 Query: 274 KAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRL 331 AG+ + H +R ATI G A + G + Y+ + Sbjct: 298 IRTTHNAGIKEIKFHDLRHTHATILLKQGVNAKIISERLGHTDISMTLNVYSHVL--PNM 355 Query: 332 GIKNSRRISSVV 343 + + + Sbjct: 356 QEEAVKNFGKSI 367 >gi|119943804|ref|YP_941484.1| tyrosine recombinase XerC [Psychromonas ingrahamii 37] gi|254799353|sp|A1SQX0|XERC_PSYIN RecName: Full=Tyrosine recombinase xerC gi|119862408|gb|ABM01885.1| tyrosine recombinase XerC subunit [Psychromonas ingrahamii 37] Length = 299 Score = 116 bits (291), Expect = 4e-24, Method: Composition-based stats. Identities = 42/275 (15%), Positives = 96/275 (34%), Gaps = 21/275 (7%) Query: 71 LKWLISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGD------FDYRKITTKHIRSGV 123 L+ LI Y A L+ + +++S + + + + + + + Sbjct: 4 LQPLIDTYLNHIASQRGLSPVTITNYQSNLAEFVALLNENKVGCWTELDGQLVRLMVKTL 63 Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 + S L+++R + V+ + ++ NP + PK + + +DM Q Sbjct: 64 HKKGLKARSIATKLSALRSFLDYLVQFDILSNNPAKGIAAPKLDKPLPKNVSVDDMFQLL 123 Query: 184 ---SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPD 239 + + E + SGLR S+ +Q ++ + I T K + + D Sbjct: 124 DIDEKDPLSIRDQCMMELMYSSGLRLSELVGINLQDIKLSAKEIMVTGKGSKQRLLPITD 183 Query: 240 GFMK----LLAMTP----IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGV 289 + L + P ++ F++ K++++A + K + H + Sbjct: 184 RAVATVKIWLKIRPEFCIKDEKALFVSKQKKRISARNVQARMEKWGLKQALPGHINPHKL 243 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 R AT ++ + G + + YT Sbjct: 244 RHSFATHMLESSGNLRAVQTLLGHADLATTQIYTH 278 >gi|330719126|ref|ZP_08313726.1| site-specific recombinase, phage integrase family protein [Leuconostoc fallax KCTC 3537] Length = 308 Score = 116 bits (291), Expect = 4e-24, Method: Composition-based stats. Identities = 43/278 (15%), Positives = 91/278 (32%), Gaps = 28/278 (10%) Query: 75 ISEYRKSAHWGSL-AVNSRISFESYF----DQIIRKSGDFDYRKITTKHIRSGVE---SR 126 + YR + L + + ++ D + + G Y K+ T IR + R Sbjct: 6 LQLYRDYLEFERLYSAQTIKAYMIDIHEFVDFLKQNGGFTSYAKVQTLDIRVYLNDLYER 65 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ-----Q 181 ++ + ++S+R+ +++ V + NP +V K + + +E+M+ Sbjct: 66 SLARTTIARKISSLRMFYQFLVANHVLEDNPFENVALRKHQNHLPEFFYEEEMKVLFDTA 125 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELP-- 238 + + E L +G R ++ + L + + K V Sbjct: 126 YNQHTKLWQRNAALLELLYATGARVAEIVNLRLPQLDFSKKLVLLRGKGDKERYVPFGKF 185 Query: 239 ----------DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--A 286 + +LL + F+NN + S ++ +N Sbjct: 186 ADHILQRYTQELRQELLTQYQQDHDFVFVNNRGAPLTTAGVSYILSQLMKQSSLNGKIHP 245 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R AT + GA + G + + YT Sbjct: 246 HMLRHTFATHLLNHGADMRTVQELLGHVNLSTTQVYTH 283 >gi|241760809|ref|ZP_04758900.1| integrase/recombinase [Neisseria flavescens SK114] gi|241318706|gb|EER55258.1| integrase/recombinase [Neisseria flavescens SK114] Length = 298 Score = 116 bits (291), Expect = 4e-24, Method: Composition-based stats. Identities = 46/268 (17%), Positives = 95/268 (35%), Gaps = 19/268 (7%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH----IRSGVESRKHTP 130 + Y K+ + ++ ++ +++R D + T+ + + + + Sbjct: 11 LELYLKTLLQQGKSEHTVSAYRRDLSELMRLLPDNLENGLPTRRDFVAVLKKLSQKGLSE 70 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 SS ++ L+ R W V+ E + +P +++ P+ + +E + Sbjct: 71 SSLVRKLSVWRQYCSWLVQIEVMESDPTFNMKAPRLPERLPKALPQEPLNHILDHAPVDD 130 Query: 191 ----QPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVEL----PDG 240 + + FE + SGLR S+ + + S+K K G V L Sbjct: 131 ELDVRDKAMFELMYGSGLRLSEIQGLNLDGIVLDEGWVSVK-GKGGKQRQVPLVAKSIAA 189 Query: 241 FMKLL--AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG--VNKSAHGVRKFSATI 296 L + G++ F N + ++ Q +A A + G + S H +R AT Sbjct: 190 LRDYLAVRIAKEGEQALFTNKNGGRLGQRQIQKRLQAWAVRVGSASHISPHMMRHSYATH 249 Query: 297 SADAGATAHELMATYGWKTVDQAETYTK 324 A + G + + YTK Sbjct: 250 LLQASGDIRAVQELLGHSNLSATQVYTK 277 >gi|328955348|ref|YP_004372681.1| integrase family protein [Coriobacterium glomerans PW2] gi|328455672|gb|AEB06866.1| integrase family protein [Coriobacterium glomerans PW2] Length = 314 Score = 116 bits (291), Expect = 4e-24, Method: Composition-based stats. Identities = 43/266 (16%), Positives = 88/266 (33%), Gaps = 26/266 (9%) Query: 85 GSLAVNSRISFESYFDQIIR---KSGDFDYRKITTKHIRSGVESRKHTP---SSAIQFLT 138 L+ N+ + I G I + + V +++ +S + L+ Sbjct: 30 RGLSENTIAGYRRDLSSYIAFLLDEGIDRLDGIDRADVEAFVCAKRDGGYSSASIERALS 89 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQFKSFWSEGSQPRL 194 +++ ++A+R+ +P S+ P+R+ + E + Q + + G++ R Sbjct: 90 AVKGFHRFAIREGLTETHPTASLRLPRREDRLPAVISIEQARALLDQPFAPTAAGARDRA 149 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLL-------- 245 E L GLR S+ V+ L + F K V + + Sbjct: 150 TLEVLYGCGLRVSELIGLDVRDLHLDEEFLHALGKGSKERLVPITGTAAAAMEAYMSGPR 209 Query: 246 ------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISA 298 A +N + +++ + AG++ H +R AT Sbjct: 210 SELAAHARRASPSPAVLLNKNGGRLSRQAVHACCERWGRIAGIDGLHPHTLRHSFATHML 269 Query: 299 DAGATAHELMATYGWKTVDQAETYTK 324 GA L G ++ + YT Sbjct: 270 AGGADLRVLQEILGHASITTTQLYTH 295 >gi|319646005|ref|ZP_08000235.1| tyrosine recombinase xerC [Bacillus sp. BT1B_CT2] gi|317391755|gb|EFV72552.1| tyrosine recombinase xerC [Bacillus sp. BT1B_CT2] Length = 305 Score = 116 bits (291), Expect = 4e-24, Method: Composition-based stats. Identities = 42/248 (16%), Positives = 89/248 (35%), Gaps = 22/248 (8%) Query: 99 FDQIIRKSGDFDYRKITTKHIRSGV---ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAI 155 F++ + G + +T +R + + T + + ++++R +K+ +R++ V Sbjct: 37 FERFLHVQGIKGFEDVTYPDVRIFLTEAHEKGLTRRTISKKISALRSFYKFLLREKLVKE 96 Query: 156 NPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAFEFLLYSGLRCSDSCR 211 NP L V PK+ + ++++++ G + + EFL +G+R S+ C Sbjct: 97 NPFLLVSLPKQDKRIPKFLYEKELEELFEVSDLSTPLGQRNQALLEFLYATGMRVSELCS 156 Query: 212 AGVQHLQNNIFSIKTQKTG-------------TIITVELPDGFMKLLAMTPIGKETFFIN 258 L + ++ G + + L +G LL F+N Sbjct: 157 LKESDLDLFLDTVLVHGKGRKQRYIPFGSFAREALDLYLQNGRRILLLKAKEPCPFIFLN 216 Query: 259 NDKQKMNATQFSIWFKA--KATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTV 316 + K T ++ H +R AT + GA + G + Sbjct: 217 QRGGPLTPRGVRYILGELVKKTSGTLHIHPHMLRHTFATHLLNEGADLRSVQELLGHSNL 276 Query: 317 DQAETYTK 324 + YT Sbjct: 277 SSTQVYTH 284 >gi|294789571|ref|ZP_06754806.1| site-specific recombinase, phage integrase family [Simonsiella muelleri ATCC 29453] gi|294482508|gb|EFG30200.1| site-specific recombinase, phage integrase family [Simonsiella muelleri ATCC 29453] Length = 247 Score = 116 bits (291), Expect = 4e-24, Method: Composition-based stats. Identities = 40/236 (16%), Positives = 77/236 (32%), Gaps = 17/236 (7%) Query: 108 DFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVA---INPCLSVERP 164 D +IT +H+ + R PSSA + +F+ A + Y+ NP V++ Sbjct: 9 DAPLHEITPQHLNRFLAWRSSAPSSANVEIAFFSAIFEHAQKSGYIDFEKKNPVKGVKKN 68 Query: 165 KRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224 K + + Q R + L +G R D C + + I +I Sbjct: 69 KIEKRDNYI-NDKLFDVVYEHAD--QQMRDLMDIALLTGQRPIDICSLHTSQISDGILNI 125 Query: 225 KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWF---KAKATK-- 279 K KT + E+ +++ F+N + +N + WF + + + Sbjct: 126 KQVKTSARLRFEISGSLKEIIDRIAPENGFLFLNKHGKPLNRQLITNWFLNLRKQIMQER 185 Query: 280 -----AGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 N +R +AT + G + + Y + + Sbjct: 186 PELEEELRNFQFRDLRAKAATDAYLQ-NDKETARELLGHTSTNMTNRYIRQVKVQK 240 >gi|239917914|ref|YP_002957472.1| tyrosine recombinase XerD [Micrococcus luteus NCTC 2665] gi|239839121|gb|ACS30918.1| tyrosine recombinase XerD [Micrococcus luteus NCTC 2665] Length = 321 Score = 116 bits (291), Expect = 4e-24, Method: Composition-based stats. Identities = 47/277 (16%), Positives = 83/277 (29%), Gaps = 38/277 (13%) Query: 85 GSLAVNSRISFESYF---DQIIRKSGDFDYRKITTKHIRSGVESRKHT--------PSSA 133 LA N+ ++ + + +G + H+ V++ SA Sbjct: 26 RGLAENTLAAYRRDLARYRRWLEAAGVRAPGDVDPGHVAGFVQALATGDDGGRPLAVRSA 85 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEG 189 + L ++R L ++ + +P V PK T R E + G Sbjct: 86 ARVLAAVRGLHRFWALEGLAETDPARDVHPPKPGTRLPRALPVEQVSALLDAVPTDTPAG 145 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHL--------QNNIFSIKT-QKTGTIITVELPDG 240 + R EFL +G R S+ V + ++ K V + Sbjct: 146 LRDRALLEFLYGTGARISEVVGLDVDDVVGLAQTGDDGGQPVVRLFGKGSKERVVPIGSY 205 Query: 241 FMKLLAM------------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSA 286 L F+N +++ K A +AG+ + S Sbjct: 206 AAAALDAWLVRGRPTIMAGAARSTPALFVNACGGRLSRQSAWAVLKRAAERAGLEADVSP 265 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 H +R AT GA + G +V + YT Sbjct: 266 HTLRHCFATHLLAGGADVRVVQELLGHASVTTTQVYT 302 >gi|159045753|ref|YP_001534547.1| integrase family protein [Dinoroseobacter shibae DFL 12] gi|157913513|gb|ABV94946.1| integrase family protein [Dinoroseobacter shibae DFL 12] Length = 388 Score = 116 bits (291), Expect = 4e-24, Method: Composition-based stats. Identities = 56/332 (16%), Positives = 111/332 (33%), Gaps = 20/332 (6%) Query: 10 FVTKERTRH-GKIIYYFRKGHGRRIRLPYPHES-TFIPAYMS-ALTGSTPKREYINSPRK 66 +V + R R G+ RK G+ L +++ Y++ AL G P E + Sbjct: 43 YVVQYRNRQTGRSR---RKTIGQHGPLMTLYQAREIARGYLADALRGGDPVMEAQARRKA 99 Query: 67 KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI-IRKSGDFDYRKITTKHIRSGVES 125 K +++ L +Y + S S D++ + G +++ K I+ S Sbjct: 100 K--SMRDLADDYMTNHALPKKRPRSAAMDRSLLDRVVLPAFGRQSVDEVSHKDIQRLHNS 157 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + TP A + L + +F+ A+R NP V R + R + ++ + + Sbjct: 158 LRDTPYQANRVLALLSKMFELAIRWGLRGDNPVKGVPRFAEEKR-YRWLSDNELDRLREA 216 Query: 186 WSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-------KTQKTGTIITVE 236 R A L +G R + + + K ++T + Sbjct: 217 LDAHPNQRAANAIRLQLLTGARTGEVLTSQWSDFDLDRGVWVKPSHHTKQKRTEHLPLSA 276 Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSAT 295 ++ +A F K ++ + + AG+ + H R A+ Sbjct: 277 ATVALLRSIAHGRTDDSPFVFPGRKPGHPIKDLKRFWTSVTSTAGLKDYRLHDNRHTHAS 336 Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGAD 327 +G + + G + Y AD Sbjct: 337 HLVSSGHSLPIVGRLLGHTNPMTTQRYAHLAD 368 >gi|261393207|emb|CAX50826.1| tyrosine recombinase XerC [Neisseria meningitidis 8013] Length = 305 Score = 116 bits (291), Expect = 4e-24, Method: Composition-based stats. Identities = 36/278 (12%), Positives = 84/278 (30%), Gaps = 24/278 (8%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD-------YRKITTKHIRSGV 123 Y ++ + ++ ++ +++ + ++ + + + Sbjct: 6 FAAHFDAYLENIVREGKSEHTVAAYRRDLEELFALLAQMPSEAEGGVPQGLSQRDFTAAL 65 Query: 124 ES---RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 R + + L+S R W V + + +P ++ PK+ + +E + Sbjct: 66 RRLSQRGLNARTLARKLSSWRQYCVWLVERGLMRADPTADIKPPKQPERVPKALPQEWLN 125 Query: 181 QFKSF-----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIIT 234 + + FE + SGLR S+ + + + G Sbjct: 126 RMLDLPVDGGDPLAVRDHALFELMYGSGLRVSEIHGLNADDVYLDEAWVHVTGKGRKQRQ 185 Query: 235 VEL----PDGFMKL--LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK--AGVNKSA 286 V L + L T + F + +++ Q A + G + S Sbjct: 186 VPLVGKSVEALKNYLPLRQTASDGKALFTGRNGTRLSQRQIQKRLAQWAAQNGDGRHVSP 245 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R A A + G ++ + YTK Sbjct: 246 HMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTK 283 >gi|310822341|ref|YP_003954699.1| Tyrosine recombinase XerC [Stigmatella aurantiaca DW4/3-1] gi|309395413|gb|ADO72872.1| Tyrosine recombinase XerC [Stigmatella aurantiaca DW4/3-1] Length = 300 Score = 116 bits (291), Expect = 4e-24, Method: Composition-based stats. Identities = 50/277 (18%), Positives = 94/277 (33%), Gaps = 26/277 (9%) Query: 74 LISEYRKSA-HWGSLAVNSRISFESYFDQIIRKS-GDFDYRKITTKH--IRSGVESRK-- 127 L+ ++R H + ++ ++ + G + H IR + + Sbjct: 7 LLEKFRIHLEHEKGASPHTVRNYLIDLVDFEKYLVGTMKLSLLAGTHAAIRGYLGTLSVD 66 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 H P+S + L S++ +K+ VRQ+ ++ +P V+ PK + +++ S Sbjct: 67 HAPASRGRRLASIKSFYKYLVRQKLLSASPAKLVKSPKLPKSLPKVLPVDEVFAILEMPS 126 Query: 188 E----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN-NIFSIKTQKTGTIITVELPDG-- 240 G + R E L GLR S+ C + + K G + + Sbjct: 127 LKTVLGLRDRAILEILYGGGLRISELCGLNLLDVDRSGRIVRVMGKGGKERLCPVNEPSI 186 Query: 241 --FMKLLA------MTPIGK---ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAH 287 LA TP E F+N ++ + K + + S H Sbjct: 187 RALEAYLARRGELLATPHAGQDPEAMFLNYRGGRLTPRSIARHLDTYVVKCALTRKVSPH 246 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 +R AT GA + G ++ + YT Sbjct: 247 ALRHSFATHLLGGGADVRSIQELLGHASLSTTQRYTH 283 >gi|294340803|emb|CAZ89198.1| putative XerD or XerC integrase [Thiomonas sp. 3As] Length = 340 Score = 116 bits (291), Expect = 4e-24, Method: Composition-based stats. Identities = 48/319 (15%), Positives = 99/319 (31%), Gaps = 49/319 (15%) Query: 54 STPKREYINSPRKKPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQII---RKSGDF 109 + P SP P TL+ L ++Y A LA + +++ D ++ G Sbjct: 2 AAPGSLLPCSPLNSP-TLRQLAADYLAHAQTERRLAEGTLVNYRRDLDDLLQRAEALGAA 60 Query: 110 DYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169 + + + + + +P + L++ R F+W R +VA NP V PK Sbjct: 61 PIESLHIRRWAAQLHAGGMSPRAIAARLSAWRSFFRWMGRLGFVAANPVQDVRAPKAAKP 120 Query: 170 GIRPWTKEDMQQFKSFWS---------------------EGSQPRLAFEFLLYSGLRCSD 208 + + + ++ G++ E L GLR S+ Sbjct: 121 LPKALSVDQAVALAAYTPQESTPASHPHRRPHQAEPFATRGARVHAIAELLYSCGLRVSE 180 Query: 209 SCRAGVQHLQ--NNIFSI------KTQKTGTIITVELPDGFMKLLA-------------M 247 V+ + T K +V + + L Sbjct: 181 LTGLDVRASKTARGWIDWDAAEATVTGKGNKRRSVPIGRPALLALRQWLEQRPALLRCDA 240 Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAH 305 + F+ ++ + + + A AG++ H +R A+ + Sbjct: 241 DADAQVALFLGARGARLTPQRVWLELREHARAAGLDARVHPHMLRHSFASHVLQSSGDLR 300 Query: 306 ELMATYGWKTVDQAETYTK 324 + G ++ + YT+ Sbjct: 301 AVQELLGHSSIATTQVYTR 319 >gi|160887404|ref|ZP_02068407.1| hypothetical protein BACOVA_05423 [Bacteroides ovatus ATCC 8483] gi|156107815|gb|EDO09560.1| hypothetical protein BACOVA_05423 [Bacteroides ovatus ATCC 8483] Length = 390 Score = 116 bits (291), Expect = 4e-24, Method: Composition-based stats. Identities = 54/231 (23%), Positives = 86/231 (37%), Gaps = 16/231 (6%) Query: 111 YRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV---ERPKRK 167 R HI+ G E R + ++A ++L AVRQ + NP + ER + K Sbjct: 153 LRNFPNSHIKYG-EPRPISENTASRYLGMFSTALNNAVRQGIIRNNPMKELDARERIQPK 211 Query: 168 TEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL------QNNI 221 T E+++ + S + + AF F ++GLR SD R H+ + Sbjct: 212 EGKKEYLTIEELRTLIATDSYRPEVKEAFIFACFTGLRLSDMYRLAPMHIFKTADGKGEY 271 Query: 222 FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281 ++ QKT + + L + + L P G + F + T A AG Sbjct: 272 IDMEMQKTEKPVIIPLSEEAKRWLP-KPRGNDIPFFDI---PTTQTVIGRALHKWAEAAG 327 Query: 282 VNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 + K S H R T+ GA G + E Y K D+ + Sbjct: 328 IEKHISFHCSRHTFGTMMLTLGADLFTTSKLMGHSNIQTTEIYAKIVDKKK 378 >gi|260771629|ref|ZP_05880549.1| tyrosine recombinase XerC [Vibrio metschnikovii CIP 69.14] gi|260613406|gb|EEX38605.1| tyrosine recombinase XerC [Vibrio metschnikovii CIP 69.14] Length = 309 Score = 116 bits (291), Expect = 4e-24, Method: Composition-based stats. Identities = 37/268 (13%), Positives = 86/268 (32%), Gaps = 22/268 (8%) Query: 77 EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV------ESRKHTP 130 EY +S L+++++ +++ + + Sbjct: 21 EYLRSE--KGLSLHTQRNYQQQLQAMAGHLHHLGVSEWQHVDAAWVRQLASKGMRDGMKA 78 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---S 187 SS L+S+R F + + + ++ NP V P+++ + ++M Q Sbjct: 79 SSLATRLSSLRSFFDFLILRGELSANPAKGVSAPRKQRPLPKNLDVDEMAQLLEVTDNDP 138 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE--------LP 238 + R E + +GLR ++ ++ L + I+ K V + Sbjct: 139 LSIRDRAMMELMYGAGLRLAELVAINLKDLSFSRGEIRVIGKGDKERKVPFSGQAKEWVG 198 Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATI 296 ++ + FI+ +++ K V + S H +R AT Sbjct: 199 KWLKVRDSLLKGEEVALFISKLGGRISHRSVQKRMAEWGHKQSVASHISPHKLRHSFATH 258 Query: 297 SADAGATAHELMATYGWKTVDQAETYTK 324 ++ + G + + + YT Sbjct: 259 VLESSNNLRAVQELLGHENISTTQIYTH 286 >gi|256827378|ref|YP_003151337.1| tyrosine recombinase XerD [Cryptobacterium curtum DSM 15641] gi|256583521|gb|ACU94655.1| tyrosine recombinase XerD [Cryptobacterium curtum DSM 15641] Length = 302 Score = 116 bits (291), Expect = 4e-24, Method: Composition-based stats. Identities = 40/271 (14%), Positives = 80/271 (29%), Gaps = 28/271 (10%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYR-------KITTKHIRSGVESRKHTP---SSAI 134 A ++ ++E + + IT +I + S K +S Sbjct: 16 RGAATSTVRAYEHDLTRYVEFLASLQPAGTAISWSHITRDNIVAFESSLKDQGLALTSRA 75 Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGS 190 + L+S++ ++ + NP + PK+ + + + + Sbjct: 76 RALSSIKSFHRFLEVDGRCSKNPASLISLPKKPQRLPDVLSIDTVGRLLDSSIGDRPVDL 135 Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLL---- 245 + R E L GLR S+ C V + ++ + K V L K L Sbjct: 136 RDRALLEVLYGCGLRASELCGLDVDRVNTDDGVLLVRGKGDKERIVPLAGTAEKALCDYL 195 Query: 246 --------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATI 296 F+N ++ + + G++ H +R AT Sbjct: 196 EHGRPVLARAGRTSTMAVFLNARGSRLTRQSVHRIVRNAGLRVGIDNLHPHTLRHSCATH 255 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGAD 327 + GA + G + + YT Sbjct: 256 LLEGGADLRIIQDMLGHSDIATTQIYTHVQQ 286 >gi|218710942|ref|YP_002418563.1| site-specific tyrosine recombinase XerC [Vibrio splendidus LGP32] gi|254799361|sp|B7VMD2|XERC_VIBSL RecName: Full=Tyrosine recombinase xerC gi|218323961|emb|CAV20323.1| Integrase/recombinase XerC [Vibrio splendidus LGP32] Length = 310 Score = 116 bits (291), Expect = 4e-24, Method: Composition-based stats. Identities = 42/268 (15%), Positives = 97/268 (36%), Gaps = 22/268 (8%) Query: 77 EYRKSAHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGV---ESRKHTP 130 EY +S L+++++ +++ + + G D+ ++ +R Sbjct: 22 EYLRSE--KGLSLHTQRNYKQQLETMAAHLVTLGLKDWSQVDAAWVRQLASKGMREGMKA 79 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---WS 187 SS L+S+R F + V + + NP V P+++ + +++ Q Sbjct: 80 SSIATRLSSLRSFFDFLVLRGEMTANPAKGVSAPRKQRPLPKNLDVDEVGQLLDVNEDDP 139 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--------TIITVELPD 239 + R E + +GLR ++ ++ + I+ G + + E D Sbjct: 140 LSIRDRAMMEVMYGAGLRLAELVGINLKDVLGRQGEIRVIGKGDKERKAPFSGLAKEWVD 199 Query: 240 GFMKLLAMTPIGKET-FFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATI 296 ++K+ ET F++ +++ + K V + S H +R AT Sbjct: 200 KWLKVRGALASPGETALFVSKLGTRISHRSVQKRMEEWGKKQSVASHISPHKLRHSFATH 259 Query: 297 SADAGATAHELMATYGWKTVDQAETYTK 324 ++ + G + + + YT Sbjct: 260 VLESSQNLRAVQELLGHENISTTQVYTH 287 >gi|52080216|ref|YP_079007.1| site-specific tyrosine recombinase XerC [Bacillus licheniformis ATCC 14580] gi|52785593|ref|YP_091422.1| site-specific tyrosine recombinase XerC [Bacillus licheniformis ATCC 14580] gi|81385577|sp|Q65JN5|XERC_BACLD RecName: Full=Tyrosine recombinase xerC gi|52003427|gb|AAU23369.1| site-specific integrase/recombinase [Bacillus licheniformis ATCC 14580] gi|52348095|gb|AAU40729.1| CodV [Bacillus licheniformis ATCC 14580] Length = 304 Score = 116 bits (291), Expect = 4e-24, Method: Composition-based stats. Identities = 42/248 (16%), Positives = 89/248 (35%), Gaps = 22/248 (8%) Query: 99 FDQIIRKSGDFDYRKITTKHIRSGV---ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAI 155 F++ + G + +T +R + + T + + ++++R +K+ +R++ V Sbjct: 36 FERFLHVQGIKGFEDVTYPDVRIFLTEAHEKGLTRRTISKKISALRSFYKFLLREKLVKE 95 Query: 156 NPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAFEFLLYSGLRCSDSCR 211 NP L V PK+ + ++++++ G + + EFL +G+R S+ C Sbjct: 96 NPFLLVSLPKQDKRIPKFLYEKELEELFEVSDLSTPLGQRNQALLEFLYATGMRVSELCS 155 Query: 212 AGVQHLQNNIFSIKTQKTG-------------TIITVELPDGFMKLLAMTPIGKETFFIN 258 L + ++ G + + L +G LL F+N Sbjct: 156 LKESDLDLFLDTVLVHGKGRKQRYIPFGSFAREALDLYLQNGRRILLLKAKEPCPFIFLN 215 Query: 259 NDKQKMNATQFSIWFKA--KATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTV 316 + K T ++ H +R AT + GA + G + Sbjct: 216 QRGGPLTPRGVRYILGELVKKTSGTLHIHPHMLRHTFATHLLNEGADLRSVQELLGHSNL 275 Query: 317 DQAETYTK 324 + YT Sbjct: 276 SSTQVYTH 283 >gi|206602932|gb|EDZ39412.1| Integrase [Leptospirillum sp. Group II '5-way CG'] Length = 367 Score = 116 bits (291), Expect = 4e-24, Method: Composition-based stats. Identities = 55/320 (17%), Positives = 107/320 (33%), Gaps = 28/320 (8%) Query: 22 IYYFRKG-HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRK 80 I++ R G+ IR ++ Y R PR TL + EY + Sbjct: 19 IWWVRYTWQGKEIRRKIGRKTDAKNYYARVRAQILEGRYEPEKPRVV--TLGAWLGEYME 76 Query: 81 SAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS----GVESRKHTPSSAIQF 136 + S++++ + + + G I T + E+ K PS+ + Sbjct: 77 TV--TSVSLSQQRGYAKF---WTNTLGGRPIASIKTAELERIQVSLREAGKLAPSTINRH 131 Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF 196 ++ F A+R + NP V K ++ D + K +S P + Sbjct: 132 FAFLKHTFNIALRDGLIKENPVKGVHFFKEPKGRTVFLSEADEAKLKESFSPEYWPYV-- 189 Query: 197 EFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET 254 E +++GLR S+ +++ + ++ K+G V L D + +L + Sbjct: 190 ELAIHTGLRQSEQFNLRWENIDMTSRVLTVPVSKSGLTRHVPLNDTALAVLRDLKARQ-- 247 Query: 255 FFIN--------NDKQKMNATQF-SIWFKAKATKAGVNKS-AHGVRKFSATISADAGATA 304 ++ + + + F F KAG++ H +R + AG Sbjct: 248 VILSPWVFPSPVDHTKPRDGNAFYKKVFVPAIEKAGLSGVVWHTLRHTFCSRLVQAGVPL 307 Query: 305 HELMATYGWKTVDQAETYTK 324 + G K Y Sbjct: 308 TTVQKLAGHKDYSTTLIYAH 327 >gi|86148174|ref|ZP_01066472.1| tyrosine recombinase [Vibrio sp. MED222] gi|85834021|gb|EAQ52181.1| tyrosine recombinase [Vibrio sp. MED222] Length = 310 Score = 116 bits (291), Expect = 5e-24, Method: Composition-based stats. Identities = 38/268 (14%), Positives = 91/268 (33%), Gaps = 22/268 (8%) Query: 77 EYRKSAHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGV---ESRKHTP 130 EY +S L+++++ +++ + + G D+ ++ +R Sbjct: 22 EYLRSE--KGLSLHTQRNYKQQLETMAAHLVTLGLKDWSQVDAAWVRQLASKGMREGMKA 79 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---WS 187 SS L+S+R F + V + + NP V P+++ + +++ Q Sbjct: 80 SSIATRLSSLRSFFDFLVLRGEMTANPAKGVSAPRKQRPLPKNLDVDEVGQLLDVNEDDP 139 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------ELP 238 + R E + +GLR ++ ++ + I+ G + Sbjct: 140 LSIRDRAMMEVMYGAGLRLAELVGINLKDVLGRQGEIRVIGKGDKERKAPFSGLAKEWVE 199 Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATI 296 + G+ F++ +++ + K V + S H +R AT Sbjct: 200 KWLKVRGELASPGEPALFVSKLGTRISHRSVQKRMEEWGKKQSVASHISPHKLRHSFATH 259 Query: 297 SADAGATAHELMATYGWKTVDQAETYTK 324 ++ + G + + + YT Sbjct: 260 VLESSQNLRAVQELLGHENISTTQVYTH 287 >gi|170761083|ref|YP_001787113.1| site-specific tyrosine recombinase XerC [Clostridium botulinum A3 str. Loch Maree] gi|169408072|gb|ACA56483.1| site-specific recombinase, phage integrase family [Clostridium botulinum A3 str. Loch Maree] Length = 326 Score = 116 bits (291), Expect = 5e-24, Method: Composition-based stats. Identities = 50/255 (19%), Positives = 102/255 (40%), Gaps = 23/255 (9%) Query: 103 IRKSGDFDYRKITTKHIRSGV----ESRKHTPSSAIQFLTSMRVLFKWAV-RQEYVAINP 157 I+ D D + I+ + + V R + + + + +++ F++ + + + NP Sbjct: 67 IKDISDEDIKNISLTDLFAFVSFVENYRNNGSYAKARKVATLKSFFRFLQGKVKIIKENP 126 Query: 158 CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQ 215 L +E PK T ++ ++ S + R L GLR S+ C + Sbjct: 127 ALELESPKISKRNPVYLTLDESKRLLSSIDGKFKERDLCIVTMFLNCGLRLSELCGINIS 186 Query: 216 HLQNNIFSIKTQKTGTIITVELPDG----------FMKLLAMTPIGKETFFINNDKQKMN 265 +++N+I ++ K TV L K + + K+ F++ + ++N Sbjct: 187 NIKNDILTV-VGKGNKERTVYLNKACIKTLNDYLSARKEMGEKIVDKDALFLSKNYTRIN 245 Query: 266 ATQFSIWFKAKATKAGVNK---SAHGVRKFSATISADAGA-TAHELMATYGWKTVDQAET 321 + K KAG++ S H +R +AT+ G L G + + + Sbjct: 246 KRSVEMLVKKYVKKAGLDGEKYSPHKLRHTAATLMYKHGGVDIRSLQMILGHENISTTQI 305 Query: 322 YTK-GADRIRLGIKN 335 YT +DR+R +K+ Sbjct: 306 YTHVDSDRLREAVKS 320 >gi|331701475|ref|YP_004398434.1| Tyrosine recombinase xerC [Lactobacillus buchneri NRRL B-30929] gi|329128818|gb|AEB73371.1| Tyrosine recombinase xerC [Lactobacillus buchneri NRRL B-30929] Length = 314 Score = 116 bits (291), Expect = 5e-24, Method: Composition-based stats. Identities = 40/283 (14%), Positives = 92/283 (32%), Gaps = 32/283 (11%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD--------YRKITTKHIRSG 122 ++W + Y +S + ++ +++ + R + + S Sbjct: 11 IQWFLK-YLQSDR--HYSTDTIQAYQQAIAEFTRFLAEIPSERKPLTQVDSFDVEAFLSD 67 Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 + RK+ +S Q +++++ + + V+ +A NP V R + +M+ Sbjct: 68 LYERKYARNSIAQKVSALKSFYAFLVKNTVIANNPFEYVHLKSNHRRLPRFLYQNEMRAL 127 Query: 183 KS------FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITV 235 G + E L +G+R S+ + + +N + T K V Sbjct: 128 FQGARQNPNHQLGLRDTAVLETLYATGIRVSECAGIQLNDIDLDNRTILVTGKGNKQRYV 187 Query: 236 E------------LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV- 282 L D ++A F+N+ + + + ++ + Sbjct: 188 PFGEYAQEAIETYLSDARSPIMAKYHQDHPFLFVNHYGRPLTSRGIEYLMDQIVKQSSLT 247 Query: 283 -NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R AT + GA + G ++ + YT Sbjct: 248 TKIHPHMLRHTFATEMLNNGADMRSVQELLGHSSLSTTQIYTH 290 >gi|312109706|ref|YP_003988022.1| integrase [Geobacillus sp. Y4.1MC1] gi|311214807|gb|ADP73411.1| integrase family protein [Geobacillus sp. Y4.1MC1] Length = 399 Score = 116 bits (291), Expect = 5e-24, Method: Composition-based stats. Identities = 49/310 (15%), Positives = 112/310 (36%), Gaps = 46/310 (14%) Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVE 124 + L I E+ L+ + ++ S+ + I+ G +I HI + ++ Sbjct: 70 PEKMKLADFIKEWETKYAVKELSETTLNNYLSHIKNHILPALGHMRIDQIKPVHIVNFLD 129 Query: 125 SRKH-----TP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR---P 173 K P + ++R + + AV + + NP +V++PK K E ++ Sbjct: 130 QIKRADGKKKPLATRTIENAYLTIRNILQRAVEWQIIKSNPASAVKKPKSKKEAVKEVQV 189 Query: 174 WTKEDMQQ-FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK------- 225 + +++++ F++ +E R+ + +GLR + ++ I+ Sbjct: 190 YDEKEVEALFRAVQNEPFHWRIFTTLAIAAGLRRGELLALEWSNIDLEKGVIRINKAIVK 249 Query: 226 -----------TQKTGTIITVE-------------LPDGFMKLLAMTPIGKETFFINNDK 261 T+K+ ++++ ++ + KE F N D Sbjct: 250 GRKRSVEKSPKTKKSNRLVSLPKSVVAELKLYRRHWLKQKLQAGDLWKEEKEYLFCNIDG 309 Query: 262 QKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA- 319 + T + W++ +AG+ H +R SAT+ + G A + G + Sbjct: 310 RHFYPTTPTTWWRRFTKRAGIRYIRLHDLRHTSATLLINQGVHAKIIAERLGHSDIRVTM 369 Query: 320 ETYTKGADRI 329 + Y + Sbjct: 370 DIYGHALQKA 379 >gi|323705319|ref|ZP_08116894.1| integrase family protein [Thermoanaerobacterium xylanolyticum LX-11] gi|323535221|gb|EGB24997.1| integrase family protein [Thermoanaerobacterium xylanolyticum LX-11] Length = 288 Score = 116 bits (291), Expect = 5e-24, Method: Composition-based stats. Identities = 41/264 (15%), Positives = 98/264 (37%), Gaps = 20/264 (7%) Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII-----RKSGDFDYRKITTKHIRSGV 123 ++ ++ K + L+ N+ S++ Q I +D KIT + + Sbjct: 2 GSIVQAFIDFLK--NEKKLSDNTVESYKRDITQFIGYLKENNIEYYDVNKITIISYLNFL 59 Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 + + + S+ + L+S++ +++ +++ P +++ PK + + + E + + Sbjct: 60 KHKNMSQSTISRHLSSIKSFYQYLFMNKFIDKEPAYTLDAPKIEKKVPLTLSVEQVDKLL 119 Query: 184 SFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD 239 S +G + + E L +GL+ S+ ++ + N I K+ + + D Sbjct: 120 SHEFENSEKGLRDKAILEVLYATGLKVSELISLHIKDVNLNYGYIYC-KSSKERFIPIGD 178 Query: 240 GFMKLL------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA--GVNKSAHGVRK 291 + L E F+N + + K G + + +RK Sbjct: 179 SALNALQNYISVRRKIDQDEFLFLNLRGEPLTRQGCWKIIKEYTNIVNPGFDITPSILRK 238 Query: 292 FSATISADAGATAHELMATYGWKT 315 A + GA + G+K+ Sbjct: 239 SFAKHMLENGADIRSVQEILGYKS 262 >gi|149198674|ref|ZP_01875717.1| integrase/recombinase XerD [Lentisphaera araneosa HTCC2155] gi|149138110|gb|EDM26520.1| integrase/recombinase XerD [Lentisphaera araneosa HTCC2155] Length = 394 Score = 116 bits (291), Expect = 5e-24, Method: Composition-based stats. Identities = 55/337 (16%), Positives = 108/337 (32%), Gaps = 32/337 (9%) Query: 17 RHGKIIYYFR---KGHGRRIRLPYPH---ESTFIPAYMSALTGSTPKREYINSPRKK--- 67 + G IYY R G + + L P+ + Y+S S + K Sbjct: 12 KRGN-IYYLRFTVNGKKKVVSLKTPNKAIATKEAEKYLSPQKASNEAEAAEFIAKAKGLI 70 Query: 68 ---PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD-----FDYRKITTKHI 119 +L Y KS ++ S++ + + +R ++T K Sbjct: 71 STERISLDDAWDLYFKSKRRRDSGKSTITSYKQHLQKFVRFVEAEYDELIYLDELTPKVA 130 Query: 120 RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179 +ES K +P++ ++ +++ F + V NP + K E R +++ Sbjct: 131 EEFLESLKVSPNTYNKYKNFLKLYFDTVSKDCGVTKNPFEGIISKSLKKESWRELNDDEV 190 Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-----IKTQKTGTIIT 234 + + + +G L +Y+G+R D+ + KT K+ ++ Sbjct: 191 DKL-TSYPKGEVWVLM-NLGIYTGMRLKDAALLKWADVDLKREKIIFTPWKTAKSEKVVH 248 Query: 235 VELPDGFMKLL---AMTPIGKETFFIN-NDKQKMNATQFSIWFKAKATKAGV---NKSAH 287 V + K L + + + + T S K + H Sbjct: 249 VPILPELRKALQWVKQQKLSNDLVLPEMAASYQKSRTNLSSLVKRIFIDLKIRDGKVGFH 308 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 +R + A AG + A G + YT Sbjct: 309 SLRHTFVSTCAKAGVPMSVVQAIVGHGSPAMTRHYTH 345 >gi|118477881|ref|YP_895032.1| DNA integration/recombination/invertion protein [Bacillus thuringiensis str. Al Hakam] gi|229184697|ref|ZP_04311897.1| DNA integration/recombination/invertion protein [Bacillus cereus BGSC 6E1] gi|118417106|gb|ABK85525.1| DNA integration/recombination/invertion protein [Bacillus thuringiensis str. Al Hakam] gi|228598801|gb|EEK56421.1| DNA integration/recombination/invertion protein [Bacillus cereus BGSC 6E1] Length = 292 Score = 116 bits (291), Expect = 5e-24, Method: Composition-based stats. Identities = 45/288 (15%), Positives = 97/288 (33%), Gaps = 37/288 (12%) Query: 90 NSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVL---FK 145 ++ + + ++ + II G K+ HI+ ++ + L R+L Sbjct: 6 STFVGYRAFINQHIIPSIGMVALHKLNVMHIQKCYKTAIDRGIANNSVLLMHRILKSALN 65 Query: 146 WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLR 205 AV+Q ++ NP E PK++ I+ WT+E++++F S+ S+ + + + +G+R Sbjct: 66 LAVKQNIISRNPADFAEIPKKERTSIQTWTEEEVKKFL-LHSQESRYHIGYLLAITTGMR 124 Query: 206 CSDSCRAGVQHLQ--------------NNIFSIKTQKTGTIITVELPDGFMKLLAMTPI- 250 + Q + +N + + T+ +P ++ L + Sbjct: 125 MGEVLGLRWQDVDFEKHTVTINQTSGHDNKIKKTAKTNSSKRTIPVPKETIESLKKHKVL 184 Query: 251 -------------GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATI 296 + N + F F AGV + H +R ATI Sbjct: 185 INQEKLRLGSAYQDFDLINCNEFGMIIKKANFRKNFIRAIHNAGVKEIKFHDLRHTHATI 244 Query: 297 SADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSVV 343 G + G + Y+ + + + + Sbjct: 245 LLKQGVNPKIISERLGHTDISMTLSVYSHVL--PNMQEEAVKNFGKSI 290 >gi|294056182|ref|YP_003549840.1| integrase family protein [Coraliomargarita akajimensis DSM 45221] gi|293615515|gb|ADE55670.1| integrase family protein [Coraliomargarita akajimensis DSM 45221] Length = 307 Score = 116 bits (291), Expect = 5e-24, Method: Composition-based stats. Identities = 42/268 (15%), Positives = 87/268 (32%), Gaps = 28/268 (10%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDF-----DYRKITTKHIRSGVES--RKHTPSSAIQFL 137 L+ + ++ + + + D+ I + +RS + RK + + + Sbjct: 23 RRLSEYTVRNYRHAVEVFVESVQERGNWQGDFAAIRSVDVRSFLVDQGRKVSRRTLHNQV 82 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK----SFWSEG---- 189 + +R + + +Q V NP V PK + T+ M++ W G Sbjct: 83 SGLRAFYLYLRKQGQVESNPFAGVSLPKLDKPLPKFLTESQMRRLLDAPVELWKAGKLSE 142 Query: 190 ---SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT--------IITVELP 238 + L E L GLR S+ C + + G + ++ Sbjct: 143 FDAFRDSLILELLYGGGLRVSELCALNHGAIDLQRGVARVIGKGQKERLCPLGPVAIQCL 202 Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATI 296 F+ ++ + + ++M K +A + + + H +R AT Sbjct: 203 KTFVDRFKLSAELDQAVACQRNGRRMEPRMVQKQLKLHLAQAELPSDMTPHKLRHSYATH 262 Query: 297 SADAGATAHELMATYGWKTVDQAETYTK 324 D GA + G + + YT Sbjct: 263 LLDNGADLRAVQELLGHANLSTTQVYTH 290 >gi|229073696|ref|ZP_04206809.1| DNA integration/recombination/invertion protein [Bacillus cereus F65185] gi|228709405|gb|EEL61466.1| DNA integration/recombination/invertion protein [Bacillus cereus F65185] Length = 369 Score = 116 bits (291), Expect = 5e-24, Method: Composition-based stats. Identities = 46/312 (14%), Positives = 108/312 (34%), Gaps = 38/312 (12%) Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVE 124 TLK ++ + + S+ ++ + + ++ + +I G K+ HI+ + Sbjct: 60 PSKVTLKEYLNHWLEIKS-MSIERSTFVGYRAFINQHVIPSIGMVTLHKLNVMHIQKCYK 118 Query: 125 SRKHTPSSAIQFLTSMRVL---FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 + + L R+L AV+Q ++ NP E PK++ I+ WT++++++ Sbjct: 119 TAIDKGIANNSILLMHRILKSALNLAVKQNIISRNPAAFAEIPKKERTSIQTWTEDEVKK 178 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--------------NNIFSIKTQ 227 F S+ S+ + + + +G+R + Q + +N + Sbjct: 179 FL-LHSQESRYHIGYLLAITTGMRMGEVLGLRWQDIDFEKHTVTINQTSGHDNKIKKTAK 237 Query: 228 KTGTIITVELPDGFMKLLAMTPI--------------GKETFFINNDKQKMNATQFSIWF 273 + T+ +P ++ L I ++ N + + F F Sbjct: 238 TNSSKRTIPVPKETIESLKRHKILINKEKLRFGSAYLDQDLINCNEFGKIIKRAHFRKSF 297 Query: 274 KAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRL 331 K G+ + H +R AT+ G + G + Y+ + Sbjct: 298 IRMTHKVGIKEIKFHDLRHTHATLLLKQGVNPKIISERLGHTDISMTLSVYSHVL--PNM 355 Query: 332 GIKNSRRISSVV 343 + + + Sbjct: 356 QEEAVKNFGKSI 367 >gi|91215199|ref|ZP_01252171.1| putative site-specific recombinase [Psychroflexus torquis ATCC 700755] gi|91186804|gb|EAS73175.1| putative site-specific recombinase [Psychroflexus torquis ATCC 700755] Length = 296 Score = 116 bits (291), Expect = 5e-24, Method: Composition-based stats. Identities = 47/253 (18%), Positives = 91/253 (35%), Gaps = 20/253 (7%) Query: 102 IIRKSGDFDYRKITTKHIRSGVE---SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPC 158 I+ + ++ IR + T + + L++++ FK+ ++ + +A+NP Sbjct: 36 ILETYDTREMSEVNYPMIRQWIVGFIELGLTHKTINRKLSTLKTFFKFLLKIQVIAVNPM 95 Query: 159 ---LSVERPKRKTEGIRPWTKEDM-QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGV 214 S++ PKR+ E E + F+ EG + L E L +G+R + + Sbjct: 96 VQHKSLKLPKRQQEAFSVLELEKVSDYFEDVTFEGLRDHLIIELLYATGMRRQELIDLQL 155 Query: 215 QHLQNNIFSIKTQ-KTGTIITVELPDG--------FMKLLAMTPIGKETFFINNDKQKMN 265 L +K + K + L D + + P G + F+ + + + Sbjct: 156 SSLDLKQQQLKVRGKRNKERLIPLLDSISFLIERYLQERSVLLPQGSQ-LFVTSKGKAIY 214 Query: 266 ATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 + K K S H +R AT D GA + G ++ E YT Sbjct: 215 PNLVYRVVHSYFEKVSTKKKLSPHLLRHAFATHLLDKGADISAIKDLLGHSSLASTEVYT 274 Query: 324 KGADRIRLGIKNS 336 + L + Sbjct: 275 HS-NFKELSKAHQ 286 >gi|213622284|ref|ZP_03375067.1| site-specific tyrosine recombinase XerC [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 234 Score = 116 bits (291), Expect = 5e-24, Method: Composition-based stats. Identities = 39/213 (18%), Positives = 76/213 (35%), Gaps = 13/213 (6%) Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 + P+S L+++R F W V Q + NP V PK + +D+ + Sbjct: 1 RKGLGPASLALRLSALRSFFDWLVSQGELKANPAKGVSAPKAPRHLPKNIDVDDVNRLLD 60 Query: 185 F---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT------- 234 + R E + +GLR S+ ++HL + + G+ Sbjct: 61 IDLNDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHLDLDTGEVWVMGKGSKERRLPIGRN 120 Query: 235 -VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRK 291 V + ++ L + +E F++ ++++A F K G+N H +R Sbjct: 121 AVTWIEHWLDLRGLFASDEEALFLSKLGKRISARNVQKRFAEWGIKQGLNSHVHPHKLRH 180 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTK 324 AT ++ + G + + YT Sbjct: 181 SFATHMLESSGDLRGVQELLGHANLSTTQIYTH 213 >gi|237721112|ref|ZP_04551593.1| phage integrase [Bacteroides sp. 2_2_4] gi|229449947|gb|EEO55738.1| phage integrase [Bacteroides sp. 2_2_4] Length = 327 Score = 116 bits (291), Expect = 5e-24, Method: Composition-based stats. Identities = 43/285 (15%), Positives = 106/285 (37%), Gaps = 24/285 (8%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP- 130 +IS++ + L +S + I G ++I T +R + +K Sbjct: 41 SQIISKFFIAKAVEGLCQSSLDYYRVILRAFILHVG-KHIKEIVTDDVRVYLAYKKINKC 99 Query: 131 --SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 ++ ++ F W + + NP L ++ ++ + +P +++DM++ +S + Sbjct: 100 SDNTLNNIRRTLSSFFTWCTEEGVLDRNPMLRIKGVRQVKKLKKPLSEDDMERLRSL-AR 158 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-----ITVELPDGFMK 243 + + EFL +G R S+ + + I G ++ + Sbjct: 159 TKRNKAIIEFLFSTGCRVSEMVNVNLGDVDWQNGQIDVLGKGRKYRTVYLSARCKIALQE 218 Query: 244 LLAMTPIGKETFFINNDKQ------------KMNATQFSIWFKAKATKAGV-NKSAHGVR 290 + E F+++ + +++ I + KAG+ N H +R Sbjct: 219 YVDSRTDDLEALFLSDYEGMCQQIKDMNKLSRISKGAVEIMLRNLGKKAGISNVHPHRLR 278 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIK 334 + +AT + G ++ G ++++ Y + D ++L + Sbjct: 279 RTAATTALKRGMPIEQVQKMLGHESIETTTIYAQSTNDEVKLAHE 323 >gi|270264257|ref|ZP_06192524.1| site-specific tyrosine recombinase XerC [Serratia odorifera 4Rx13] gi|270041906|gb|EFA15003.1| site-specific tyrosine recombinase XerC [Serratia odorifera 4Rx13] Length = 303 Score = 116 bits (291), Expect = 5e-24, Method: Composition-based stats. Identities = 41/279 (14%), Positives = 97/279 (34%), Gaps = 20/279 (7%) Query: 66 KKPTTLKWLISEYRKSAH-WGSLAVNSRISFES---YFDQIIRKSGDFDYRKITTKHIR- 120 +L+ + + + L+ +++S+ + ++ G ++ + +R Sbjct: 3 PVAASLQQPVDAFLRYLKVERQLSPLTQLSYSRQLQALMALAQEMGVTEWPALDAAKVRM 62 Query: 121 -SGVESRKHTPSSAIQF-LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 + R SS++ L+++R W V Q + NP + P+ + ++ Sbjct: 63 LAARSKRAGLQSSSLALRLSALRSFLDWQVSQGALIANPAKGIRTPRSGRHLPKNIDVDE 122 Query: 179 MQQFKSFW---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT---- 231 + Q + + R E + +GLR S+ +H+ I G+ Sbjct: 123 INQLLNIDLNDPLAVRDRAMLEVMYGAGLRLSELVGLDCRHVDLAAGDIWVLGKGSKERK 182 Query: 232 ----IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KS 285 V + ++ + + + F++N ++++ F K GVN Sbjct: 183 LPIGRTAVTWLEHWLAMRDLFGPADDAMFLSNQGKRISTRNVQKRFAEWGVKQGVNSHIH 242 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R AT ++ + G + + YT Sbjct: 243 PHKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTH 281 >gi|170745401|ref|YP_001766858.1| integrase family protein [Methylobacterium radiotolerans JCM 2831] gi|170659002|gb|ACB28056.1| integrase family protein [Methylobacterium radiotolerans JCM 2831] Length = 305 Score = 116 bits (291), Expect = 5e-24, Method: Composition-based stats. Identities = 44/286 (15%), Positives = 99/286 (34%), Gaps = 19/286 (6%) Query: 76 SEYRKSAHWGS-LAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE----SRKHTP 130 Y + L+ N+ ++ ++I G + +T + + + R P Sbjct: 8 EAYLRHCQLERHLSSNTLAAYRQDISELIAHFGLIEVVAVTGDALVTYADHLSKRRGLAP 67 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE-RPKRKTEGIRPWTKEDMQQFKSFWSEG 189 ++ + L R LF+W R ++ +P E R + R ++M + + Sbjct: 68 ATVKRRLVCARGLFRWLTRTGALSADPFGGTEIRVRIPDRLPRCLATDEMARLARAADDA 127 Query: 190 S-QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI---ITVE------LPD 239 S RLA L +G+R + + + + I+ G + + Sbjct: 128 SATTRLATLLLFATGMRVGELVSVRLADIDLDRDVIRIVGKGNRQRQVVIPNESLKDAIR 187 Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATIS 297 + + E F + + + + A AG+ ++ H +R +AT Sbjct: 188 EYARTYHADDRASERFLREPNGRSLTTAAIRTRLRRLAKAAGLVRTVTPHMLRHTAATEL 247 Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRI-RLGIKNSRRISSV 342 +AG + G +++ + YT +D R ++ + + Sbjct: 248 LEAGVDIRFVQRLLGHRSILTTQIYTHVSDIALRTAVRGADLFGRL 293 >gi|308232201|ref|ZP_07415262.2| integrase [Mycobacterium tuberculosis SUMu001] gi|308374648|ref|ZP_07436853.2| integrase [Mycobacterium tuberculosis SUMu006] gi|308375530|ref|ZP_07444217.2| integrase [Mycobacterium tuberculosis SUMu007] gi|308377076|ref|ZP_07441079.2| integrase [Mycobacterium tuberculosis SUMu008] gi|308378046|ref|ZP_07481362.2| integrase [Mycobacterium tuberculosis SUMu009] gi|308379269|ref|ZP_07485701.2| integrase [Mycobacterium tuberculosis SUMu010] gi|308380428|ref|ZP_07489920.2| integrase [Mycobacterium tuberculosis SUMu011] gi|308214699|gb|EFO74098.1| integrase [Mycobacterium tuberculosis SUMu001] gi|308341194|gb|EFP30045.1| integrase [Mycobacterium tuberculosis SUMu006] gi|308346043|gb|EFP34894.1| integrase [Mycobacterium tuberculosis SUMu007] gi|308349004|gb|EFP37855.1| integrase [Mycobacterium tuberculosis SUMu008] gi|308353729|gb|EFP42580.1| integrase [Mycobacterium tuberculosis SUMu009] gi|308357572|gb|EFP46423.1| integrase [Mycobacterium tuberculosis SUMu010] gi|308361515|gb|EFP50366.1| integrase [Mycobacterium tuberculosis SUMu011] Length = 295 Score = 116 bits (290), Expect = 5e-24, Method: Composition-based stats. Identities = 47/285 (16%), Positives = 95/285 (33%), Gaps = 10/285 (3%) Query: 44 IPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII 103 + A+++A S K P + + I +Y + + + ++ Sbjct: 9 VEAFLAA-AKSQNKPPGPPPSLHAPPSWRRDIDDYLLNLNAAGQRPATIRLRKTVLCAAA 67 Query: 104 RKSGDFDYRKITTKHIRSGVESRKH-TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE 162 G +T +H+ + ++H +P + +++R F WA + V S+ Sbjct: 68 HGLG-RPPADVTAEHLLDWLGKQQHLSPEGRKTYRSTLRGFFVWAYEMDRVRDYVADSLP 126 Query: 163 RPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222 + + + RP + Q + + L +GLR +++ +A L + Sbjct: 127 KVRCPKQPPRPAGDDVWQAALAKADR--RIELMIRLAGEAGLRRAEAAQAHTGDLMDGGL 184 Query: 223 SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282 + K G V + D L+ TP G F N + A Sbjct: 185 LLVHGKGGKRRIVPISDYLAALIRDTPHG--YLFPNGTGGHLTAEHVGKLVSRALPG--- 239 Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 + + H +R AT + + G ++ E YT D Sbjct: 240 DATMHTLRHRYATRAYRGSHNLRAVQQLLGHASIVTTERYTALCD 284 >gi|229181836|ref|ZP_04309144.1| DNA integration/recombination/invertion protein [Bacillus cereus 172560W] gi|228601634|gb|EEK59147.1| DNA integration/recombination/invertion protein [Bacillus cereus 172560W] Length = 369 Score = 116 bits (290), Expect = 5e-24, Method: Composition-based stats. Identities = 43/288 (14%), Positives = 98/288 (34%), Gaps = 37/288 (12%) Query: 90 NSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVL---FK 145 ++ + ++ + +I G K+ HI+ ++ + L R+L Sbjct: 83 STFAGYRAFINQHVIPSIGMVALHKLNVMHIQKCYKTAIDKGITNNSILLMHRILKSALN 142 Query: 146 WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLR 205 AV+Q ++ NP E PK++ I+ WT+E++++F S S+ S+ + + + +G+R Sbjct: 143 LAVKQNIISRNPADFAEIPKKEKTPIQTWTEEEVKKFLS-HSQESRYHIGYLLAITTGMR 201 Query: 206 CSDSCRAGVQHLQ--------------NNIFSIKTQKTGTIITVELPDGFMKLLAMTPI- 250 + Q + +N + + T+ +P+ + L Sbjct: 202 LGEVLGLRWQDIDFEKHTVTINQTSGHDNKIKKTAKTNSSKRTIPVPNETIVALKKHKTL 261 Query: 251 -------------GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATI 296 ++ + + + F F K G+ + H +R ATI Sbjct: 262 INKEKLRFGSAYLDQDLINCDEFGRIIKRAHFRKSFIRATHKVGIKEIKFHDLRHTHATI 321 Query: 297 SADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSVV 343 G + G + Y+ + + + + Sbjct: 322 LLKQGVNPKIISERLGHTDISMTLSVYSHVL--PNMQEEAVKNFGKSI 367 >gi|315302916|ref|ZP_07873649.1| tyrosine recombinase XerC [Listeria ivanovii FSL F6-596] gi|313628712|gb|EFR97112.1| tyrosine recombinase XerC [Listeria ivanovii FSL F6-596] Length = 300 Score = 116 bits (290), Expect = 5e-24, Method: Composition-based stats. Identities = 38/283 (13%), Positives = 99/283 (34%), Gaps = 27/283 (9%) Query: 67 KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK------ITTKHIR 120 + + + +Y S + + N+ ++E+ R + + + + Sbjct: 3 QEGKWEQMFLDYLHSER--NYSENTSTAYENDLLDFRRFLNEQAITQYKQVTFLDVRIYL 60 Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 + ++ + + ++ + ++S+R + + +R+ + NP V K + + + E+M+ Sbjct: 61 TELKQKSFSRTTVARKISSLRSFYTFLLRENVITENPFTYVSHAKNQLRLPKFFYSEEME 120 Query: 181 Q-----FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIIT 234 ++ + + R+ E L +G+R S+ + + +I K Sbjct: 121 ALFQVVYEDNETLTIRDRVLLEVLYGTGIRVSECAGILLTDIDQTYQAILIRGKGNKERY 180 Query: 235 VEL-----------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283 V D + L+ ++ IN+ + +KA + Sbjct: 181 VPFGVYAEDAITDYLDCRLALMKRFNKTHDSLLINHYGDPLTTRGIRYCLTKIISKASLT 240 Query: 284 KS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 + H +R AT + GA + G ++ + YT Sbjct: 241 RKIHPHMLRHTFATDLLNNGADMRTVQELLGHASLSSTQIYTH 283 >gi|258515633|ref|YP_003191855.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771] gi|257779338|gb|ACV63232.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771] Length = 323 Score = 116 bits (290), Expect = 5e-24, Method: Composition-based stats. Identities = 42/300 (14%), Positives = 97/300 (32%), Gaps = 26/300 (8%) Query: 48 MSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR--- 104 M ++G + + + + ++ + + + + + + Sbjct: 1 MRIISGFRKRSIEVPDETGYKIDFDYAVELFKDAYMVDEWSQRT---LNYHLENLTAFKK 57 Query: 105 --KSGDFDYRKITTKHIRSGVESRKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCL 159 + + I+ K + V+S K+ ++ + ++RV F+ +EY+ NP L Sbjct: 58 FLTTQAVNISLISAKTLDEYVKSMKNADKKKNTINGRVKTLRVFFRILNEKEYIPDNPAL 117 Query: 160 SVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQ 215 ++ + I P++ E + + G + + + LL +G+R + C Sbjct: 118 GLKTIRGPKPEIFPFSDEQINALLAQPDRTTFAGLRDYMIMQILLDTGVRLEELCNIKYS 177 Query: 216 HLQNN--IFSIKTQKTGTIITVELPDGFMKLLA-----MTPIGKET-FFINNDKQKMNAT 267 + ++ K TV + + + ET +N D + Sbjct: 178 DVNLKTCRILVRKGKGNKSRTVLFGSETRRTIMKYLKVTGDLDAETNLILNQDGNPLKQR 237 Query: 268 QFSIWFKAKATKAGVNK---SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 A+ AG+ S H R A G + L G ++ Y + Sbjct: 238 SVQDRISLHASAAGLKGVRPSPHTFRHTFAKKFLMNGGDPYVLRDLLGHNSMSTVIIYLR 297 >gi|297626642|ref|YP_003688405.1| Integrase/recombinase [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296922407|emb|CBL56979.1| Integrase/recombinase [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 308 Score = 116 bits (290), Expect = 5e-24, Method: Composition-based stats. Identities = 50/292 (17%), Positives = 101/292 (34%), Gaps = 29/292 (9%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKH 128 L ++Y + + N+ ++ + ++ G D + +R + S++ Sbjct: 15 AGLFADYLRLQR--RRSANTERAYLTDLRELALFLQGRGVHDPDHVRLTDLRRWLASQQA 72 Query: 129 T--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + P++ + + RV F WA + +P + PK + T+ ++++ Sbjct: 73 SEAPATVARRAGTARVFFGWARETGRLGTDPAAGLRSPKLGRRLPQTLTQTEVRELMDAA 132 Query: 187 SE---------GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE 236 + G + E L SGLR S+ C V L ++ K V Sbjct: 133 AAAAAEAGGVRGLRDVAILETLYGSGLRVSELCGLDVGDLDEARGLVRVIGKGDKERIVP 192 Query: 237 L-PDGFMKLLA--------MTPIGKETFFINNDKQKMNATQFSIWFKA--KATKAGVNKS 285 L G + A + P F+ ++N +A + Sbjct: 193 LGLPGLRAIDAWRAVRDQWVAPASANALFLGTRGGRINQRVVRRVVHESMRAVPEAPDIG 252 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD-RIRLGIKNS 336 HG+R AT + GA + G ++ + YT +D R+R + + Sbjct: 253 PHGLRHAMATHLLEGGADLRSVQEMLGHASLSTTQIYTHVSDERVRAAYEQA 304 >gi|254472511|ref|ZP_05085911.1| phage integrase [Pseudovibrio sp. JE062] gi|211958794|gb|EEA93994.1| phage integrase [Pseudovibrio sp. JE062] Length = 365 Score = 116 bits (290), Expect = 5e-24, Method: Composition-based stats. Identities = 50/329 (15%), Positives = 98/329 (29%), Gaps = 34/329 (10%) Query: 34 RLPYPHESTFIPAYMSALTGSTP---KREYINSPRKKPTTLKWLISEYRKSAHWGSLAVN 90 R P + A + G R+K T+ L Y + A Sbjct: 21 RHGSPWTTEEARAEAKRVLGDVAHGGDPMAARQARRKDLTVAELCDLYLEEGTATKKAST 80 Query: 91 SRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT--PS--------------SAI 134 I GD I H+R+ ++ P +A Sbjct: 81 IATDKGRIERHIKPVIGDLLVSDIKANHVRTLLKKVAEGNLPREGVGPVADKLGGKGTAS 140 Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----QQFKSFWSEGS 190 + + + +F +A Y NP V+R + R T+ ++ + + ++G+ Sbjct: 141 RTVGLLGGIFSFANELGYRTDNPVHGVKRFPDQKNQ-RYLTQSELTRLFELLEEIEADGA 199 Query: 191 QPRL--AFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDG----FM 242 P+ + L +G R + + + + + KTG ++ + Sbjct: 200 NPKAVKIIKLLALTGARRGEIEQLKWSEVFLEQGTLHFEDSKTGQK-SIPISAAVIGLLR 258 Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGA 302 + I F + +W + H +R A+++ GA Sbjct: 259 EAEQERCIDSPYVFPSERGDGFYVGATKVWRDLRTKFGDEKLRMHDLRHSFASLAVAGGA 318 Query: 303 TAHELMATYGWKTVDQAETYTK-GADRIR 330 + + A G K + Y AD +R Sbjct: 319 SLPMIGALLGHKDTATTQRYAHLSADPLR 347 >gi|167038625|ref|YP_001666203.1| phage integrase family protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320117017|ref|YP_004187176.1| integrase family protein [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166857459|gb|ABY95867.1| phage integrase family protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319930108|gb|ADV80793.1| integrase family protein [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 372 Score = 116 bits (290), Expect = 5e-24, Method: Composition-based stats. Identities = 51/314 (16%), Positives = 107/314 (34%), Gaps = 48/314 (15%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS-GDFDYRKITTKHIRSGVESRKH 128 TL ++++ ++ LA + S++ + + GD + K+ I++ K Sbjct: 62 TLGQFLNKWYETHCELKLAPKTLKSYKELIELYFKPYLGDIELTKLKPVMIQNYYNKLKE 121 Query: 129 ---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + ++ ++ K AV + ++ NPC VE PK+ I W+ D+++ K Sbjct: 122 LGLSDTTINYHHRVLKSALKKAVVWQLISKNPCDYVEPPKKNKNEITVWSINDVKKAKEI 181 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ---------------NNIFSIKTQKTG 230 + + + L F LY+G+R + C + + IK K+ Sbjct: 182 FKD-TPIYLHFMLALYTGMRIGEICGLKWEDIDFNNKTCTVKRQYQQVGGKEIIKEPKSE 240 Query: 231 TIIT-VELPDGFMKLLAMTPI---GKETFFINNDKQKM-----------------NATQF 269 T I + L +++L +K + +F Sbjct: 241 TSIRVIPLHSDVIEVLKEEKKKQLQNRMLLGEKYNKKYEGYISVWEDGRMKTPEYVSKKF 300 Query: 270 SIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKG-AD 327 S KA + H +R A+ AG + G + + Y+ D Sbjct: 301 SKILKAYPELPQI--RFHDLRHSCASFLVQAGVPMKVVSEILGHSQIGITMDLYSHVLLD 358 Query: 328 RIRLGIKNSRRISS 341 + + +++ Sbjct: 359 SKK---EAIKKLEE 369 >gi|95928522|ref|ZP_01311269.1| phage integrase [Desulfuromonas acetoxidans DSM 684] gi|95135312|gb|EAT16964.1| phage integrase [Desulfuromonas acetoxidans DSM 684] Length = 417 Score = 116 bits (290), Expect = 5e-24, Method: Composition-based stats. Identities = 64/338 (18%), Positives = 117/338 (34%), Gaps = 28/338 (8%) Query: 35 LPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNS-RI 93 + P Y + R + R K TL+ EY + + + Sbjct: 74 ITLPDAVQKAQLYRQMIQEGLDPRRTLTERRIK--TLEKFCHEYFE--DFIDQNHKHPKK 129 Query: 94 SFESYFDQIIRKSGDFDYRKITTKHIRSGVE----------SRKHTPSSAIQFLTSMRVL 143 S I+ G ++I ++ + V+ R+ + S+A Q L+ + L Sbjct: 130 SRHMLKRWILPVFGHIPLKQIDSRLVSEFVQQILTTVSQKTERRISGSTAKQALSLLSKL 189 Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF-KSFWSEGSQPRL-AFEFLLY 201 F+ A+ Q V NPC V RPK R + ++ +F K+ S +P+ A L Sbjct: 190 FQCAIDQHLVDANPCDGVRRPKVNRSRERYLSGDEYPRFIKATMSLIDRPQAKAIMILAV 249 Query: 202 SGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMT--PIGKETFFI 257 GLR S+ + +N IK K G V L LL K ++ Sbjct: 250 LGLRPSEVLGLAWCDVHLIDNRIHIKQAKNGESRFVTLNSVARDLLQQLYDARKKRAVWV 309 Query: 258 N-NDKQKMN--ATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGW 313 + + S F+ A + + + + +R+ AT +G + Sbjct: 310 FPSRGKSSTGHLQSVSKTFERICNMAELPEFNLYDLRRSHATFLLQSGVDLFTIKEALHH 369 Query: 314 KTVDQAETYTKGADRIRLG---IKNSRRISSVVDSDDP 348 KT+ Y + + + + R + ++ +P Sbjct: 370 KTLASTMVYARVSSESMVNANELAAQRALEAISGQFEP 407 >gi|293373295|ref|ZP_06619653.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] gi|292631691|gb|EFF50311.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] Length = 383 Score = 116 bits (290), Expect = 5e-24, Method: Composition-based stats. Identities = 49/215 (22%), Positives = 89/215 (41%), Gaps = 14/215 (6%) Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSV---ERPKRKTEGIRPWTKEDMQQFKSFWS 187 S+ + ++ + V A++ Y INP + E+ K+ ++E++Q+ Sbjct: 167 STIVDYVRTFSVAINAAIKDGYKIINPFKLLSSDEKVKQPDSHREYLSQEELQKLMITPC 226 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHL---QNNIFSIK-TQKTGTIITVELPDGFMK 243 A+ F +SGLR SD +++ F++ QKTG + + LPD M+ Sbjct: 227 RRDDIGKAYLFACFSGLRISDIRALRWKNIIVEDGQFFAMLFMQKTGKELKIPLPDKAME 286 Query: 244 LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAG 301 ++++ ++ F N T K A AG+NK + H R AT+ G Sbjct: 287 IISIRGNDEDKVFFL----PSNPTVEDN-LKKWAEAAGINKHLTFHTARHTYATLLLTLG 341 Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336 A + + G V + Y K D+ ++ N Sbjct: 342 ADLYTVSKMLGHTNVATTQIYAKVVDKKKVDAVNL 376 >gi|237795202|ref|YP_002862754.1| site-specific recombinase, phage integrase family [Clostridium botulinum Ba4 str. 657] gi|229261716|gb|ACQ52749.1| site-specific recombinase, phage integrase family [Clostridium botulinum Ba4 str. 657] Length = 326 Score = 116 bits (290), Expect = 5e-24, Method: Composition-based stats. Identities = 50/255 (19%), Positives = 102/255 (40%), Gaps = 23/255 (9%) Query: 103 IRKSGDFDYRKITTKHIRSGV----ESRKHTPSSAIQFLTSMRVLFKWAV-RQEYVAINP 157 I+ D D + I+ + + V R + + + + +++ F++ + + + NP Sbjct: 67 IKDISDEDIKNISLTDLFAFVSFVENYRNNGSYAKARKVATLKSFFRFLQGKVKIIKENP 126 Query: 158 CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQ 215 L +E PK T ++ ++ S + R L GLR S+ C + Sbjct: 127 ALELESPKISKRNPVYLTLDESKRLLSSIDGKFKERDLCIVTMFLNCGLRLSELCGINIS 186 Query: 216 HLQNNIFSIKTQKTGTIITVELPDG----------FMKLLAMTPIGKETFFINNDKQKMN 265 +++N+I ++ K TV L K + + K+ F++ + ++N Sbjct: 187 NIKNDILTV-VGKGNKERTVYLNKACIKTLNDYLSVRKEIGEKIVDKDALFLSKNYTRIN 245 Query: 266 ATQFSIWFKAKATKAGVNK---SAHGVRKFSATISADAGA-TAHELMATYGWKTVDQAET 321 + K KAG++ S H +R +AT+ G L G + + + Sbjct: 246 KRSVEMLVKKYVKKAGLDGEKYSPHKLRHTAATLMYKHGGVDIRSLQMILGHENISTTQI 305 Query: 322 YTK-GADRIRLGIKN 335 YT +DR+R +K+ Sbjct: 306 YTHVDSDRLREAVKS 320 >gi|197284356|ref|YP_002150228.1| integrase [Proteus mirabilis HI4320] gi|194681843|emb|CAR41137.1| integrase [Proteus mirabilis HI4320] Length = 333 Score = 116 bits (290), Expect = 5e-24, Method: Composition-based stats. Identities = 54/323 (16%), Positives = 105/323 (32%), Gaps = 19/323 (5%) Query: 7 LPPFVTKERTRHGKIIYYFR-KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65 LPP + R G IYY+R + + A + L PK ++ Sbjct: 12 LPPNLY---LRKG--IYYYRDVRTKKEFSVGSNKSLAITEAIQANLAIYKPKESLVDRIN 66 Query: 66 KKP-TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124 TL + YR + L + +ES I D +T + + + + Sbjct: 67 NVHCVTLHEWLDTYRGKVNSRGLKEKTLYDYESRIKLIKLHFNDCPIENVTPRDVATFIS 126 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 + A ++M F A+ + NP + PK + R + E+ + + Sbjct: 127 EYPKK-AMAKLLRSTMLDAFNEAIADGVIKENPVSVTKPPKTSVQRSR-LSLEEFK--YA 182 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244 + R F + + R SD ++N+ + KTG+ + + L + Sbjct: 183 LEHTNDKYRHMFLLAVLTAQRISDIINMKWDDIKNDRLYVTQIKTGSKVAIPLSLRLESI 242 Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-----SAHGVRKFSATISAD 299 I +N K+ + + K +A + H +R + + Sbjct: 243 GYS--IKDVLNLMNRSSDKICGNTTAKTLRGKFIEALPEYLENKPTFHEIR-SLSARLYE 299 Query: 300 AGATAHELMATYGWKTVDQAETY 322 +A G K++ + Y Sbjct: 300 EEKSAEFAKKILGHKSMRMTDKY 322 >gi|188585653|ref|YP_001917198.1| integrase family protein [Natranaerobius thermophilus JW/NM-WN-LF] gi|179350340|gb|ACB84610.1| integrase family protein [Natranaerobius thermophilus JW/NM-WN-LF] Length = 283 Score = 116 bits (290), Expect = 5e-24, Method: Composition-based stats. Identities = 53/285 (18%), Positives = 112/285 (39%), Gaps = 23/285 (8%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134 + E+ K+ + ++ + + ++ + + ++ HI +E+ S Sbjct: 1 MREFEKTLKLKGYTEKTIKAYIGHIKRFLKVGLNINNKEDIQSHIIFLLENNNSH-SYVN 59 Query: 135 QFLTSMRVLFKWAVRQEYVAI-------NPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 Q ++++++L ++ YV + N + V RPK++ + +++++ + + + Sbjct: 60 QAISALKLLNNEITKKGYVDVHGIKTCVNQQIKVNRPKKERKLPNVLSQKEVLELLTVTT 119 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN--IFSIKTQKTGTIITVELPDGFMKLL 245 + + + SGLR ++ R + L I IK K L D +K+L Sbjct: 120 -NIKHKAILCIIYSSGLRVGEAVRLKPEDLDGEQKIIHIKQGKGRKDRYTILSDNALKIL 178 Query: 246 A----MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299 + K F N+ ++ F+ KA +NK S H +R AT + Sbjct: 179 RNYYKIYQPKKWLFPGQNENLHLSERSVQKIFQKAKQKANINKKVSVHSLRHSFATHLLE 238 Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344 AG + G ++ E YT + +N RI S +D Sbjct: 239 AGTDLRYIQKLLGHESSKTTEIYTH------ITTQNISRIESPLD 277 >gi|258514510|ref|YP_003190732.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771] gi|257778215|gb|ACV62109.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771] Length = 301 Score = 116 bits (290), Expect = 6e-24, Method: Composition-based stats. Identities = 43/269 (15%), Positives = 81/269 (30%), Gaps = 29/269 (10%) Query: 85 GSLAVNSRISFESYF----DQIIRKSGDFD-------YRKITTKHIRSGVESRKHTPSSA 133 + + + S++ D D + + ++ + S+ Sbjct: 16 KNASPKTVESYQKDLFDGIDFFSAALNKKDNELLPMDVSHNLMRRYLAQMQQKGLARSTV 75 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----QQFKSFWSEG 189 + L S R +K+ R++Y+ N V PK + E + + S S G Sbjct: 76 ARRLASWRSFYKYLCREDYLQQNHLAGVATPKGNGKLPLFLETEQLKLLLEAPDSTTSLG 135 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLLAMT 248 + E L +GLR S++ + L ++ K + L + Sbjct: 136 QRDAALLEILYAAGLRVSEAVNLDLSALDFDSRMLKAYGKGSKERMIPFGTYAAAALKLY 195 Query: 249 PIGKET-----------FFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSAT 295 F+NN +++ K G+ S H +R AT Sbjct: 196 IKDGRHKLSKISQSEQAVFLNNSGTRLSDRGIRKIIDKYIEKTGLKSAISPHTLRHTFAT 255 Query: 296 ISADAGATAHELMATYGWKTVDQAETYTK 324 D GA + G + + YT Sbjct: 256 HLLDNGADLRSVQELLGHVRLSTTQIYTH 284 >gi|330900232|gb|EGH31651.1| Phage integrase [Pseudomonas syringae pv. japonica str. M301072PT] Length = 320 Score = 116 bits (290), Expect = 6e-24, Method: Composition-based stats. Identities = 54/277 (19%), Positives = 102/277 (36%), Gaps = 32/277 (11%) Query: 84 WGSLA-VNSRISFESYFDQIIRKSGDF---DYRKITTKHI---RSGVESRKHTPSSAIQF 136 + +L +R ++++ + G ++R +T H+ R+ +E R ++ + Sbjct: 33 FANLDNPRTRRAYQNDLEDFCGFVGLASADEFRVVTRSHVLAWRAQLEHRGLAGATIRRK 92 Query: 137 LTSMRVLFKWAVRQE-YVAINPCLSVERPKRKT-EGIRPWTKED-----MQQFKSFWSEG 189 L ++ LF + NP V+RPK ++ EG P + ++ +G Sbjct: 93 LAALASLFDHLLESNAIAGGNPVHGVKRPKIESNEGKTPALGDHQAKALLEAPDETTLKG 152 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKT-QKTGTIITVELPDG------ 240 + R LLY GLR ++ V +Q+ I +K K G + + L Sbjct: 153 LRDRALLAVLLYHGLRREEAALLQVSDIQDRRGIQHLKVHGKGGKVRYLPLHPVAAGRIH 212 Query: 241 --FMKLLAMTPIGKETFFINNDKQ----KMNATQFSIWFKAKATKAGV---NKSAHGVRK 291 K FI + + A A A AG+ HG+R Sbjct: 213 QYLESSEHHLTDRKVPLFIPLRGKLTGAGITANGIYTVVAAYAKMAGIEVAGLGVHGLRA 272 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 +AT + + A ++ A G + + Y + +R Sbjct: 273 TAATNALEHEADIAKVQAWLGHANISTTKIYDRRENR 309 >gi|269218465|ref|ZP_06162319.1| tyrosine recombinase XerD [Actinomyces sp. oral taxon 848 str. F0332] gi|269211576|gb|EEZ77916.1| tyrosine recombinase XerD [Actinomyces sp. oral taxon 848 str. F0332] Length = 255 Score = 116 bits (290), Expect = 6e-24, Method: Composition-based stats. Identities = 40/233 (17%), Positives = 74/233 (31%), Gaps = 21/233 (9%) Query: 110 DYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169 D R +E +S + + ++R +A + NP V PK + Sbjct: 5 DVRPEDVASFAECLEGMAR--ASVARSMAAVRSFHAFAFEEGRTGANPAADVRPPKIPSR 62 Query: 170 GIRPWTKEDMQQFKSFWSE-----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224 + +D+ + + R E L +G R S++ V + S Sbjct: 63 LPKAMDIDDVAALIAAGGAGEGPAPLRDRALLEVLYGTGARISEAVGLSVDDVDLAGASA 122 Query: 225 KT-QKTGTIITVEL-----------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIW 272 + K V L LA + G + F+N + ++ Sbjct: 123 RLFGKGRKERVVPLGGYAVEAIDAYLVRARPSLASSGPGTPSLFLNTRGRPLSRQSAWAI 182 Query: 273 FKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 + A +A + + S H +R AT GA + G ++ + YT Sbjct: 183 IQNAAERAKLSVHVSPHTLRHSFATHLLQGGADIRVVQELLGHSSLSTTQIYT 235 >gi|111017946|ref|YP_700918.1| site-specific tyrosine recombinase XerD [Rhodococcus jostii RHA1] gi|110817476|gb|ABG92760.1| tyrosine recombinase [Rhodococcus jostii RHA1] Length = 308 Score = 116 bits (290), Expect = 6e-24, Method: Composition-based stats. Identities = 46/283 (16%), Positives = 86/283 (30%), Gaps = 34/283 (12%) Query: 75 ISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG----VESRKHT 129 + Y A N+ S+ ++ + D + I + + R Sbjct: 7 VDSYLDHLAVERGAARNTLGSYRRDLERYTQFLADRELTDIDRIREQDVSDFVIALRSGD 66 Query: 130 PS---------SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 P+ SA + L ++R ++A + A++ V P + ++ Sbjct: 67 PNRELPPLAASSAARALIAVRGFHRFAAAEGMTAVDVARDVRPPSPAKRLPKSLPVNEVL 126 Query: 181 QFKSFW--------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGT 231 + R E L +G R S++ V + + K G Sbjct: 127 ALLEAVGGSGPADGPRAVRDRALLELLYSTGARISEAVGLDVDDVDTETRSVLLRGKGGK 186 Query: 232 IITVELPDGFMKLLAM---------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282 V + ++ L G F+N +++ +A A AG+ Sbjct: 187 QRVVPVGRPAVESLDAYLIRGRPALASRGTPALFLNVRGGRLSRQSAWKVLQAAADAAGI 246 Query: 283 --NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 S H +R AT D GA + G +V + YT Sbjct: 247 SSAVSPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQIYT 289 >gi|153940640|ref|YP_001391047.1| site-specific tyrosine recombinase XerC [Clostridium botulinum F str. Langeland] gi|152936536|gb|ABS42034.1| site-specific recombinase, phage integrase family [Clostridium botulinum F str. Langeland] gi|322806030|emb|CBZ03597.1| putative integrase/recombinase [Clostridium botulinum H04402 065] Length = 326 Score = 116 bits (290), Expect = 6e-24, Method: Composition-based stats. Identities = 51/255 (20%), Positives = 103/255 (40%), Gaps = 23/255 (9%) Query: 103 IRKSGDFDYRKITTKHIRSGV----ESRKHTPSSAIQFLTSMRVLFKWAV-RQEYVAINP 157 I+ D D + I+ + + V R + + + + +++ F++ + + + NP Sbjct: 67 IKDISDEDIKNISLTDLFAFVSFVENYRNNGSYAKARKVATLKSFFRFLQGKVKIIKENP 126 Query: 158 CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQ 215 L +E PK T ++ ++ S + R L GLR S+ C + Sbjct: 127 ALELESPKISKRNPVYLTLDESKRLLSSIDGKFKERDLCIVTMFLNCGLRLSELCGINIS 186 Query: 216 HLQNNIFSIKTQKTGTIITVELPDGFMKLLA----------MTPIGKETFFINNDKQKMN 265 +++N+I ++ K TV L +K L + K+ F++ + ++N Sbjct: 187 NIKNDILTV-VGKGNKERTVYLNKACIKTLNDYLSVRKEMGEKIVDKDALFLSKNYTRIN 245 Query: 266 ATQFSIWFKAKATKAGVNK---SAHGVRKFSATISADAGA-TAHELMATYGWKTVDQAET 321 + K KAG++ S H +R +AT+ G L G + + + Sbjct: 246 KRSVEMLVKKYVKKAGLDGEKYSPHKLRHTAATLMYKHGGVDIRSLQMILGHENISTTQI 305 Query: 322 YTK-GADRIRLGIKN 335 YT +DR+R +K+ Sbjct: 306 YTHVDSDRLREAVKS 320 >gi|148379752|ref|YP_001254293.1| site-specific recombinase, phage integrase family [Clostridium botulinum A str. ATCC 3502] gi|153934110|ref|YP_001384049.1| site-specific tyrosine recombinase XerC [Clostridium botulinum A str. ATCC 19397] gi|153936224|ref|YP_001387591.1| site-specific tyrosine recombinase XerC [Clostridium botulinum A str. Hall] gi|168180365|ref|ZP_02615029.1| site-specific recombinase, phage integrase family [Clostridium botulinum NCTC 2916] gi|226949034|ref|YP_002804125.1| site-specific recombinase, phage integrase family [Clostridium botulinum A2 str. Kyoto] gi|148289236|emb|CAL83332.1| tyrosine recombinase [Clostridium botulinum A str. ATCC 3502] gi|152930154|gb|ABS35654.1| site-specific recombinase, phage integrase family [Clostridium botulinum A str. ATCC 19397] gi|152932138|gb|ABS37637.1| site-specific recombinase, phage integrase family [Clostridium botulinum A str. Hall] gi|182668709|gb|EDT80687.1| site-specific recombinase, phage integrase family [Clostridium botulinum NCTC 2916] gi|226843631|gb|ACO86297.1| site-specific recombinase, phage integrase family [Clostridium botulinum A2 str. Kyoto] Length = 326 Score = 116 bits (290), Expect = 6e-24, Method: Composition-based stats. Identities = 51/255 (20%), Positives = 103/255 (40%), Gaps = 23/255 (9%) Query: 103 IRKSGDFDYRKITTKHIRSGV----ESRKHTPSSAIQFLTSMRVLFKWAV-RQEYVAINP 157 I+ D D + I+ + + V R + + + + +++ F++ + + + NP Sbjct: 67 IKDISDEDIKNISLTDLFAFVSFVENYRNNGSYAKARKVATLKSFFRFLQGKVKIIKENP 126 Query: 158 CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQ 215 L +E PK T ++ ++ S + R L GLR S+ C + Sbjct: 127 ALELESPKISKRNPVYLTLDESKRLLSSIDGKFKERDLCIVTMFLNCGLRLSELCGINIS 186 Query: 216 HLQNNIFSIKTQKTGTIITVELPDGFMKLLA----------MTPIGKETFFINNDKQKMN 265 +++N+I ++ K TV L +K L + K+ F++ + ++N Sbjct: 187 NIKNDILTV-VGKGNKERTVYLNKACIKTLNDYLNVRKEMGEKIVDKDALFLSKNYTRIN 245 Query: 266 ATQFSIWFKAKATKAGVNK---SAHGVRKFSATISADAGA-TAHELMATYGWKTVDQAET 321 + K KAG++ S H +R +AT+ G L G + + + Sbjct: 246 KRSVEMLVKKYVKKAGLDGEKYSPHKLRHTAATLMYKHGGVDIRSLQMILGHENISTTQI 305 Query: 322 YTK-GADRIRLGIKN 335 YT +DR+R +K+ Sbjct: 306 YTHVDSDRLREAVKS 320 >gi|20807810|ref|NP_622981.1| site-specific tyrosine recombinase XerC [Thermoanaerobacter tengcongensis MB4] gi|34222923|sp|Q8RA66|XERC_THETN RecName: Full=Tyrosine recombinase xerC gi|20516368|gb|AAM24585.1| Integrase [Thermoanaerobacter tengcongensis MB4] Length = 353 Score = 116 bits (290), Expect = 6e-24, Method: Composition-based stats. Identities = 53/293 (18%), Positives = 99/293 (33%), Gaps = 29/293 (9%) Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESY-FDQIIRKSGDFDYRKITTKHIRSGV- 123 + P T+K Y + L + FD+I D D I + + Sbjct: 59 RSPNTIKAY--AYDLILFFRFLKKRRGKVSDDIPFDEI--DISDVDIDLIESVDLNDLYA 114 Query: 124 ------ESRKHTPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTK 176 R +TP + + + S+R + + R+ + ++ NP +E PK T Sbjct: 115 YLSFVTNERSNTPPARARKVASLRSFYNYLYRKAKVISKNPTQELESPKLSVRHPIYLTL 174 Query: 177 EDMQQFKSFWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT 234 E+ ++ + + R L GLR S+ + ++ + ++ K T Sbjct: 175 EESKKLLNSIDGPFKERDYAIITLFLNCGLRVSELVNINLDDIKEDKLTVI-GKGNKQRT 233 Query: 235 VELP--------DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA---GVN 283 + L D K+ F++ ++++ K A G Sbjct: 234 IYLNEACIKAISDYLKVRPKEGVKDKKALFLSKRLKRISVKTVQYLVKKHLKHANLEGKK 293 Query: 284 KSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGAD-RIRLGIK 334 SAH +R +AT+ G L G V + YT D ++R + Sbjct: 294 YSAHKLRHTAATLMYRYGNVDIRTLQKLLGHSNVSTTQIYTHVDDSQLREAVN 346 >gi|46907504|ref|YP_013893.1| integrase/recombinase XerC [Listeria monocytogenes str. 4b F2365] gi|226223880|ref|YP_002757987.1| integrase/recombinase [Listeria monocytogenes Clip81459] gi|254852669|ref|ZP_05242017.1| integrase/recombinase XerC [Listeria monocytogenes FSL R2-503] gi|254932406|ref|ZP_05265765.1| integrase/recombinase XerC [Listeria monocytogenes HPB2262] gi|255520259|ref|ZP_05387496.1| integrase/recombinase [Listeria monocytogenes FSL J1-175] gi|300765313|ref|ZP_07075297.1| integrase/recombinase XerC [Listeria monocytogenes FSL N1-017] gi|71153411|sp|Q720E4|XERC_LISMF RecName: Full=Tyrosine recombinase xerC gi|259710432|sp|C1L2I5|XERC_LISMC RecName: Full=Tyrosine recombinase xerC gi|46880772|gb|AAT04070.1| integrase/recombinase XerC [Listeria monocytogenes serotype 4b str. F2365] gi|225876342|emb|CAS05051.1| Putative integrase/recombinase [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258605987|gb|EEW18595.1| integrase/recombinase XerC [Listeria monocytogenes FSL R2-503] gi|293583963|gb|EFF95995.1| integrase/recombinase XerC [Listeria monocytogenes HPB2262] gi|300513996|gb|EFK41059.1| integrase/recombinase XerC [Listeria monocytogenes FSL N1-017] gi|328468566|gb|EGF39566.1| tyrosine recombinase xerC [Listeria monocytogenes 1816] gi|328475121|gb|EGF45905.1| tyrosine recombinase xerC [Listeria monocytogenes 220] Length = 300 Score = 116 bits (290), Expect = 6e-24, Method: Composition-based stats. Identities = 38/273 (13%), Positives = 95/273 (34%), Gaps = 27/273 (9%) Query: 77 EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK------ITTKHIRSGVESRKHTP 130 +Y S + +VN+ ++E+ R + + + + ++ + + Sbjct: 13 DYLHSER--NYSVNTSTAYENDLLDFRRFLNEQAITTYQQVTFLDVRIYLTELKQKSFSR 70 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ-----FKSF 185 ++ + ++S+R + + +R+ + NP V K + + + E+M+ ++ Sbjct: 71 TTVARKISSLRSFYTFLLRENVINENPFTYVSHAKNQLRLPKFFYSEEMEALFQVVYEDN 130 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVEL------- 237 + + R+ E L +G+R S+ + L + +I K V Sbjct: 131 ETLTLRDRVLLEVLYGTGIRVSECAGILLPDLDTSYQAILIRGKGNKERYVPFGVYAEDA 190 Query: 238 ----PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRK 291 L++ + +N+ + +KA + + H +R Sbjct: 191 ITDYLPERANLMSRYKKSHDALLVNHYGDPLTTRGIRYCLSKIISKASLTRKIHPHMLRH 250 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTK 324 AT + GA + G ++ + YT Sbjct: 251 TFATDLLNNGADMRTVQELLGHASLSSTQIYTH 283 >gi|301311823|ref|ZP_07217745.1| site-specific recombinase, phage integrase family [Bacteroides sp. 20_3] gi|300829925|gb|EFK60573.1| site-specific recombinase, phage integrase family [Bacteroides sp. 20_3] Length = 380 Score = 116 bits (290), Expect = 6e-24, Method: Composition-based stats. Identities = 59/331 (17%), Positives = 119/331 (35%), Gaps = 43/331 (12%) Query: 26 RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWG 85 R+ + + +R + A ++A G+ P+ + + T+ + + + Sbjct: 56 RRQNAQTLRKAEDIQRERTEALLNAKVGTVPESKSSDMLLSDWMTI---VRKNHEHREAR 112 Query: 86 SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH----------TPSSAIQ 135 L ++ +++ D + + ++ + TP +A Sbjct: 113 DL-----NGIDNARKNLLKFRADVRLCDVDRQFYIDYIDWLRSSCKTAWGKQITPKTAHS 167 Query: 136 FLTSMRVLFKWAVRQEYVAINP------CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 + T++R AVR+ + NP ++ P+ K + T E++++ + Sbjct: 168 YYTTLRTALNEAVRERLIESNPWYKLEMTEKIKVPESKRD---FLTIEEIKKMIATPFFN 224 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHL---QNNIF-SIKTQKTGTIITVELPDGFMKLL 245 Q R A+ F + GLR SD + + + S+ KT + + L +K L Sbjct: 225 EQVRQAYLFSCFCGLRISDIRKLRWRDISISGGQWLVSVVMTKTTNPVYIPLSSQAVKWL 284 Query: 246 A----MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299 TP G N + + K A KAGV K + H R A + Sbjct: 285 PERNGCTPDG------LVFGGLPNTSNLCVSLKNWADKAGVKKNVTFHTARHSCAVLLLT 338 Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIR 330 GA + + G ++V + Y K D+ + Sbjct: 339 LGADIYTVSKILGHRSVRATQVYAKIVDKKK 369 >gi|237722727|ref|ZP_04553208.1| bacteriophage integrase [Bacteroides sp. 2_2_4] gi|293373708|ref|ZP_06620055.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] gi|317473968|ref|ZP_07933247.1| phage integrase [Bacteroides eggerthii 1_2_48FAA] gi|229448537|gb|EEO54328.1| bacteriophage integrase [Bacteroides sp. 2_2_4] gi|292631363|gb|EFF49994.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] gi|316909810|gb|EFV31485.1| phage integrase [Bacteroides eggerthii 1_2_48FAA] Length = 380 Score = 116 bits (290), Expect = 6e-24, Method: Composition-based stats. Identities = 59/331 (17%), Positives = 119/331 (35%), Gaps = 43/331 (12%) Query: 26 RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWG 85 R+ + + +R + A ++A G+ P+ + + T+ + + + Sbjct: 56 RRQNAQTLRKAEDIQRERTEALLNAKVGTVPESKSSDMLLSDWMTI---VRKNHEHREAR 112 Query: 86 SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH----------TPSSAIQ 135 L ++ +++ D + + ++ + TP +A Sbjct: 113 DL-----NGIDNARKNLLKFRADVRLCDVDRQFYIDYIDWLRSSCKTAWGKQITPKTAHS 167 Query: 136 FLTSMRVLFKWAVRQEYVAINP------CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 + T++R AVR+ + NP ++ P+ K + T E++++ + Sbjct: 168 YYTTLRTALNEAVRERLIESNPWYKLEMTEKIKVPESKRD---FLTIEEIKKMIATPFFN 224 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHL---QNNIF-SIKTQKTGTIITVELPDGFMKLL 245 Q R A+ F + GLR SD + + + S+ KT + + L +K L Sbjct: 225 EQVRQAYLFSCFCGLRISDIRKLRWRDISISGGQWLVSVVMTKTTNPVYIPLSSQAVKWL 284 Query: 246 A----MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299 TP G N + + K A KAGV K + H R A + Sbjct: 285 PERNGCTPDG------LVFGGLPNTSNLCVSLKNWADKAGVKKNVTFHTARHSCAVLLLT 338 Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIR 330 GA + + G ++V + Y K D+ + Sbjct: 339 LGADIYTVSKILGHRSVRATQVYAKIVDKKK 369 >gi|229145530|ref|ZP_04273914.1| Integrase/recombinase [Bacillus cereus BDRD-ST24] gi|228637983|gb|EEK94429.1| Integrase/recombinase [Bacillus cereus BDRD-ST24] Length = 326 Score = 116 bits (290), Expect = 6e-24, Method: Composition-based stats. Identities = 44/274 (16%), Positives = 96/274 (35%), Gaps = 20/274 (7%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVE--- 124 + + + K+ L + +++ ++R G Y ++T +HI + Sbjct: 33 SWEEAFGLFHKAGILKGLREATLFHYQAQLKSLLRALPVGIKPY-EVTKEHIEDAIVFCK 91 Query: 125 -SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 R PS+ + + + FK+ +++ INP +++ K + + + T + ++ Sbjct: 92 VKRNLQPSTINIVIRANKTFFKFLFENKHIPINPIKDIKKLKARAKEVEVLTPKQLKTLL 151 Query: 184 SFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVEL 237 S G + L+ +GLR ++ V + + ++ +K KT V + Sbjct: 152 SKVDRKTWNGIRDYAILLVLIETGLRQNEILNLSVLDVVWEQDLLLVKHTKTYHQRKVPI 211 Query: 238 PD----GFMKLLAMTP-IGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVR 290 D + L + + + F + + + A A + S H R Sbjct: 212 TDNTKNALKRWLLIRGEVYTKRLFCGISGKALTNSGLRQMIYKYAKLANIQSRCSPHIFR 271 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK 324 A+I G L G + YT Sbjct: 272 HTFASIYLRNGGDLFSLQQIMGHSDITMTRRYTH 305 >gi|163759949|ref|ZP_02167033.1| tyrosine recombinase [Hoeflea phototrophica DFL-43] gi|162282907|gb|EDQ33194.1| tyrosine recombinase [Hoeflea phototrophica DFL-43] Length = 313 Score = 116 bits (290), Expect = 6e-24, Method: Composition-based stats. Identities = 47/275 (17%), Positives = 96/275 (34%), Gaps = 30/275 (10%) Query: 85 GSLAVNSRISFESYFDQ---IIRKSGDFDYRK--ITTKHIRSGVESRKHTPSSAIQFLTS 139 A+N+ ++ D +++ G R T + + S + +R +P+S + L++ Sbjct: 20 RGAALNTLEAYRRDLDDASSVVKALGSTLDRANADTIRTVISDLAARGFSPASQARRLSA 79 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----------- 188 +R +K+ + +P VE P+++ + + +D+ + + Sbjct: 80 LRQFYKFLHAEGLRDDDPTGVVESPRKRRSLPKILSVDDVSRLLAQAEADISKARDESET 139 Query: 189 --GSQPRLAFEFLLYSGLRCSDSCRAGVQHL-QNNIFSIKTQKTGTIITVELPDGFMKLL 245 + R E L +G+R S+ + L ++ F I K V + L Sbjct: 140 TQRIRFRALLELLYATGMRVSELVGLPYRVLAEDGRFLIIRGKGAKERMVPMSRPARLAL 199 Query: 246 AMTPIG--------KETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSA 294 F N+ ++ F+ K A +AG+ S H +R A Sbjct: 200 EAWMAEIGEVAEETGFLFPANSSDGHLSRQVFARELKDVAARAGLPSAKVSPHVLRHAFA 259 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 + GA + G + + YT D Sbjct: 260 SHLLAGGADLRAVQKLLGHTDISTTQIYTHVLDER 294 >gi|330974049|gb|EGH74115.1| phage integrase family site specific recombinase [Pseudomonas syringae pv. aceris str. M302273PT] Length = 320 Score = 116 bits (290), Expect = 6e-24, Method: Composition-based stats. Identities = 56/277 (20%), Positives = 104/277 (37%), Gaps = 32/277 (11%) Query: 84 WGSLA-VNSRISFESYFDQIIRKSGDF---DYRKITTKHI---RSGVESRKHTPSSAIQF 136 + +L +R ++++ G D+R +T H+ R+ +E R ++ + Sbjct: 33 FANLDNPRTRRAYQNDLTDFSSFIGLASADDFRLVTRSHVLAWRADLEHRGLAGATIRRK 92 Query: 137 LTSMRVLFKWAVRQE-YVAINPCLSVERPKRKT-EGIRPWTKED-----MQQFKSFWSEG 189 L ++ LF + NP V+RPK ++ EG P + + +G Sbjct: 93 LAALASLFDHLLENNAIAGGNPVHGVKRPKIESNEGKTPALGDHQAKALLDAPDESTLKG 152 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKT-QKTGTIITVELPDG------ 240 + R LLY GLR ++ + V + + I +K K G + + L Sbjct: 153 LRDRAILAVLLYHGLRREEAAQLQVSDIQERRGIQHLKIHGKGGKVRYLPLHPVAAGRIH 212 Query: 241 --FMKLLAMTPIGKETFFINNDKQK----MNATQFSIWFKAKATKAGV---NKSAHGVRK 291 + K FI + ++A +A A KAG+ HG+R Sbjct: 213 LYLERSGHHLDDKKVPLFIPLRGKPTGAGVSANGIYTVVEAYAKKAGIEVAGLGVHGLRA 272 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 +AT + D A ++ A G + + Y + +R Sbjct: 273 TAATNALDHEADIAKVQAWLGHANISTTKIYDRRENR 309 >gi|255292018|dbj|BAH90501.1| tyrosine recombinase [uncultured bacterium] gi|255292879|dbj|BAH89979.1| tyrosine recombinase [uncultured bacterium] gi|255292943|dbj|BAH90041.1| tyrosine recombinase [uncultured bacterium] gi|255293213|dbj|BAH90303.1| tyrosine recombinase [uncultured bacterium] Length = 399 Score = 116 bits (290), Expect = 6e-24, Method: Composition-based stats. Identities = 56/321 (17%), Positives = 108/321 (33%), Gaps = 25/321 (7%) Query: 44 IPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-I 102 + A + +K T+K L +++ + +++ ++S D+ I Sbjct: 73 LAQEWLAQVRRGGDPSADKAVARKAPTVKELCTKFMEDYSKLRNKPSTQEGYQSVIDRNI 132 Query: 103 IRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVA--INPCLS 160 + G + + + ++ H P+ A + + MR +F A Y NPC Sbjct: 133 VPMIGRMKVQDVKRPDVAGMMKKMTHKPADANRTFSVMRRMFNLAEVWGYRPDGTNPCRH 192 Query: 161 VERPKRKTEGIRPWTKEDM-------QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAG 213 V + + EDM ++ ++ E LA R + Sbjct: 193 VPMFP-NGKATHLISDEDMGKLFRHLERLEAEGLENYVIPLAIRLQFEFAGRRGEIVTLQ 251 Query: 214 VQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFI----NNDKQKMNAT 267 + N KTG + + + +LL+ P + ++ N+ Q + Sbjct: 252 WDWVDFENRRVVWPDSKTGGMSK-PMSEEAYRLLSTAPRQDDCPYVLPSPNHPGQHLTTG 310 Query: 268 QFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 ++ + AG HG+R SAT A++G MA KTV Y Sbjct: 311 EYYNGWSRALKAAGAAHVGTHGIRHRSATDIANSGIPVKVGMALTAHKTVAMFMRYVHTE 370 Query: 327 DRIRLGIKNSRRISSVVDSDD 347 D R+ + +V + Sbjct: 371 D------DPVRKAAELVANRR 385 >gi|121533770|ref|ZP_01665597.1| tyrosine recombinase XerC [Thermosinus carboxydivorans Nor1] gi|121307761|gb|EAX48676.1| tyrosine recombinase XerC [Thermosinus carboxydivorans Nor1] Length = 302 Score = 116 bits (290), Expect = 6e-24, Method: Composition-based stats. Identities = 40/287 (13%), Positives = 88/287 (30%), Gaps = 28/287 (9%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQ-----IIRKSGDFDYRKITTKHIRSGVESRKH 128 I ++ + + + ++ S+ + + + + IT IR+ + K Sbjct: 8 IEQFFRYLRLEKNASPHTVKSYREDIEHFWEFALQHNGSEVLFAAITPMLIRAYLARLKA 67 Query: 129 ---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 ++ + + ++R +++ R+ V NP V PK + + + ++ + Sbjct: 68 DDYARTTIARRIAALRSFYRFLCREGLVDTNPFKLVHTPKIEKKLPVFLDEREVAELLEL 127 Query: 186 WS---EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN-NIFSIKTQKTGTIITVELPDGF 241 + G + E L +G+R ++ + + F I K V + Sbjct: 128 PADDVLGRRDAAILELLYATGIRVAELTGLKTSDVDLVSRFVIVCGKGAKERIVPIGRTA 187 Query: 242 MKLLAM-------------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SA 286 L + FIN+ + V K S Sbjct: 188 AAALERYLADARPRLYSKWRKEQHQFLFINSKGGPLTDRSVRRIIDKYIANLAVAKKVSP 247 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 H +R AT + GA + G + + YT + Sbjct: 248 HTIRHTFATHMLNNGADLRSVQEMLGHVNLSTTQLYTHVTKERLKAV 294 >gi|299821501|ref|ZP_07053389.1| integrase/recombinase [Listeria grayi DSM 20601] gi|299817166|gb|EFI84402.1| integrase/recombinase [Listeria grayi DSM 20601] Length = 314 Score = 116 bits (290), Expect = 6e-24, Method: Composition-based stats. Identities = 38/269 (14%), Positives = 100/269 (37%), Gaps = 18/269 (6%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQI----IRKSGDFDYRKITTKHIRSGVE--SRK 127 LI ++ +S ++ + + F+ + ++ D +++ + + V + Sbjct: 26 LIEDFIRSRRLKNVRETTIKYYLDIFNVLNRDKVKVDLDKPLSELSQRDLEDIVMYWKKS 85 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 +S + + + + + ++Y+ +NP +++ E + ++++ +++ Sbjct: 86 LKVTSINSKIKAFKAFYNYLFSKKYIKVNPVADFSLLRQREEIRKTLEANEIKKIANYYK 145 Query: 188 E-----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242 + + F+ LL +GLR S++ V + ++ + K T V + Sbjct: 146 RKETFTAFRDLVLFQLLLDTGLRISEAINIKVPDIHDDYIVVVETKNLTQRIVYISKSMK 205 Query: 243 KLLA-----MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSAT 295 + L + FI D K F + + K S H R+ A Sbjct: 206 QKLNSYISIRGECNHQYLFIIQDGTKYTKYSFQESLRNAGRMCQLRKQVSPHVCRRTYAK 265 Query: 296 ISADAGATAHELMATYGWKTVDQAETYTK 324 + +G A L + G +++ + Y + Sbjct: 266 NAILSGMDAFSLASLLGHSSLEVTKRYVQ 294 >gi|313674236|ref|YP_004052232.1| integrase family protein [Marivirga tractuosa DSM 4126] gi|312940934|gb|ADR20124.1| integrase family protein [Marivirga tractuosa DSM 4126] Length = 379 Score = 116 bits (290), Expect = 6e-24, Method: Composition-based stats. Identities = 49/280 (17%), Positives = 103/280 (36%), Gaps = 27/280 (9%) Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKI---TTKHIRSGVESRKHTPSSAI 134 Y + A ++ S+ + F++ I ++ K + +K++ SS Sbjct: 111 YLNELNQRRYACSTVKSYIACFERFINYYSKKKMTELGEEEIKKFIQNLIDKKYSDSSVN 170 Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVE--RPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192 + +++ + E V P + RP+++ +KE++ Q + + Sbjct: 171 MHINAIKFYY------EVVEKMPNRFYDFARPQKEERLPEVLSKEEILQMIANC-HNLKH 223 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI--KTQK-TGTIITV---ELPDGFMKLLA 246 + L +GLR S+ + + + SI + K I++ + D Sbjct: 224 KCIVSLLYSAGLRRSELLNLKLTDIDSGRMSILIRQAKGKKDRISILGNTILDDLRAYFK 283 Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATA 304 K F Q+ ++T S K A +AG+ K + H +R AT +AG Sbjct: 284 SY-RPKVFLFEGAQGQQYSSTSVSKIVKKTAQRAGIKKRVTPHMLRHSFATHLLEAGTDL 342 Query: 305 HELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344 + + G + E YT + + ++I + +D Sbjct: 343 RYIQSLLGHNNSNTTEIYTH------VAVNAFKKIRNPLD 376 >gi|118473200|ref|YP_886852.1| site-specific tyrosine recombinase XerC [Mycobacterium smegmatis str. MC2 155] gi|166918888|sp|A0QVB4|XERC_MYCS2 RecName: Full=Tyrosine recombinase xerC gi|118174487|gb|ABK75383.1| tyrosine recombinase XerC [Mycobacterium smegmatis str. MC2 155] Length = 300 Score = 116 bits (290), Expect = 6e-24, Method: Composition-based stats. Identities = 40/272 (14%), Positives = 101/272 (37%), Gaps = 29/272 (10%) Query: 88 AVNSRISFE----SYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT---PSSAIQFLTSM 140 + ++R ++ + FD + +++G+ +++ +RS + + + ++ + +S+ Sbjct: 19 SDHTRRAYRGDLTALFDFVEQRTGERSLARVSLPLLRSWLAEQSASGAARTTLARRTSSV 78 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED-MQQFKSF-------WSEGSQP 192 + WA+R+ + ++P ++ PK + ++ + + + Sbjct: 79 KTFCAWALRRGLIGVDPAARLQVPKARRTLPAVLRRDQALDALDAVNSGAQEGDPIALRD 138 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMT--- 248 RL E L +G+R S+ C + + + ++ K TV + L Sbjct: 139 RLIVELLYATGIRVSELCGLDIDDIDTSRRVVRVLGKGNKQRTVPFGEPAHAALTAWLTE 198 Query: 249 -------PIGKETFFINNDKQKMNATQFSIWFKAK--ATKAGVNKSAHGVRKFSATISAD 299 P + ++++ Q A + HG+R +AT + Sbjct: 199 GRPQLSIPESGPALLLGARGRRLDPRQARTVVHQTVSAVNGAPDIGPHGLRHSAATHLLE 258 Query: 300 AGATAHELMATYGWKTVDQAETYTK-GADRIR 330 GA + G ++ + YT +R+R Sbjct: 259 GGADLRIVQELLGHTSLATTQLYTHVTVERLR 290 >gi|227510442|ref|ZP_03940491.1| site-specific recombinase XerD [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227190094|gb|EEI70161.1| site-specific recombinase XerD [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 331 Score = 116 bits (290), Expect = 6e-24, Method: Composition-based stats. Identities = 39/281 (13%), Positives = 97/281 (34%), Gaps = 31/281 (11%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD--------FDYRKITTKHIRSGV 123 W + Y +S + ++ ++++ + ++ + + + +G+ Sbjct: 29 DWFLK-YLRSER--HYSEDTVQAYQNDLTEFLKFLNETSKDHTSLIKIDSLDVESYLTGL 85 Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 +K+ +S Q ++++R + + ++ E + NP V + R + +MQ Sbjct: 86 YDKKYARNSIAQKVSALRSFYSFLIKNEVIKNNPFEYVHLKNQNRRLPRFFYPTEMQALF 145 Query: 184 SFWSEGSQPRL-----AFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVE- 236 S +G + E +G+R S+ ++ + N + T K + Sbjct: 146 SAAKKGERKLAFRNSAILEVFYSTGIRVSEGVTIQLKDIDLENQLILVTGKGRKQRYLPF 205 Query: 237 -----------LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--N 283 L + L+ + FIN+ + + + ++ + N Sbjct: 206 GKPAKQAVENYLKESREPLMTKYHQKHDYLFINHFGKPLTSRGIEYILDGIIKQSSLTTN 265 Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R AT + GA + G ++ + YT Sbjct: 266 IHPHMLRHTFATEMLNNGADMRSVQELLGHSSLSTTQIYTH 306 >gi|269958529|ref|YP_003328316.1| site-specific tyrosine recombinase [Anaplasma centrale str. Israel] gi|269848358|gb|ACZ49002.1| site-specific tyrosine recombinase [Anaplasma centrale str. Israel] Length = 312 Score = 116 bits (290), Expect = 6e-24, Method: Composition-based stats. Identities = 37/266 (13%), Positives = 92/266 (34%), Gaps = 30/266 (11%) Query: 88 AVNSRISFESYFDQI---------IRKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQ 135 + N+ ++E R +G D +++ + +RS + R SS + Sbjct: 24 SPNTVAAYERDIMDFYKFICGEPCERVAGLKDIQELRSAELRSWLADRFKQGKQSSSNAR 83 Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF----KSFWSEGSQ 191 + +R F++ R+ + + ++ RP + + + +++ ++ ++ Sbjct: 84 AVAVVRSFFRYLHRKCGMNGSVVSNISRPIVRKSLPKVLEESQIRKVMGEREAPHWTHTR 143 Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA----- 246 L GLR S++ L + + K + + + + Sbjct: 144 DLAVSALLYGCGLRISEAVNVKFCDLGQDGLRV-LGKGSKERVIPVLPWVRRAIDEYVAN 202 Query: 247 ------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISA 298 + G E F+ +++ T F+ + + G+ ++ H +R AT Sbjct: 203 CPHLRVHSASGTEYIFVGLRGGRLSRTYFAHRMRKLRRRVGLPETTTPHTLRHSFATHLF 262 Query: 299 DAGATAHELMATYGWKTVDQAETYTK 324 GA + G ++ + YT Sbjct: 263 LEGADIRVVQELLGHASLATTQIYTH 288 >gi|238798591|ref|ZP_04642067.1| Tyrosine recombinase [Yersinia mollaretii ATCC 43969] gi|238717547|gb|EEQ09387.1| Tyrosine recombinase [Yersinia mollaretii ATCC 43969] Length = 263 Score = 116 bits (290), Expect = 6e-24, Method: Composition-based stats. Identities = 40/240 (16%), Positives = 82/240 (34%), Gaps = 16/240 (6%) Query: 101 QIIRKSGDFDYRKITTKHIRSGVESRKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINP 157 ++ + G ++ + +RS V K SS L+++R W V Q + NP Sbjct: 2 ELGEQMGLAHWQTLDAAQVRSLVSRSKRAGLHASSLALRLSALRSFLNWLVSQGVLQANP 61 Query: 158 CLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQPRLAFEFLLYSGLRCSDSCRAGV 214 V P+ + +++ + + R E + +GLR S+ Sbjct: 62 AKGVSTPRSGRHLPKNIDVDEVDKLLDIDLNDPLAVRDRAMLEVMYGAGLRLSELVGMNC 121 Query: 215 QHLQNNIFSIKTQKTGT--------IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNA 266 +H+ + G+ V + ++ L + + F+ N ++++A Sbjct: 122 KHVDLVGGEVWVMGKGSKERKVPIGRTAVTWLNHWLALRELFEPQDDAIFLANTGKRISA 181 Query: 267 TQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 F K GV + H +R AT ++ + G + + YT Sbjct: 182 RNVQKRFAEWGVKQGVSSHIHPHKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTH 241 >gi|329889983|ref|ZP_08268326.1| tyrosine recombinase xerD [Brevundimonas diminuta ATCC 11568] gi|328845284|gb|EGF94848.1| tyrosine recombinase xerD [Brevundimonas diminuta ATCC 11568] Length = 300 Score = 116 bits (290), Expect = 6e-24, Method: Composition-based stats. Identities = 42/289 (14%), Positives = 102/289 (35%), Gaps = 34/289 (11%) Query: 85 GSLAVNSRISFESYF----DQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSM 140 + ++ ++ + G + + + + R + ++A + S+ Sbjct: 16 RDASPHTLAAYGRDLADAQTWLNDVGGLMGAPQEALEAWFADLSRRGLSAATAARRRASV 75 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-----SEGSQPRLA 195 R +++A+ + + A +P ++ PK+ + ++++++ + + G + + Sbjct: 76 RQFYRFALGEGWRADDPSRRLDAPKQGRSLPKTLSRDEIEALLTAAGAADSTAGLRLIVL 135 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFMKLLAMTP----- 249 E SGLR S+ V+ ++ + + I K G L + + Sbjct: 136 VEMAYASGLRVSELLALKVEAVRRDPAYLIVRGKGGKERLAPLNMPAREAIKAWLNARDA 195 Query: 250 -----IGKETFFINNDKQ--KMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISAD 299 + + + + +F+ A AG++ S H +R AT + Sbjct: 196 ARKPNTPDSAWLFPSHGKSGHLTPRRFAQLLDQAAVMAGIDPARVSPHVLRHAFATHLLE 255 Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348 GA + G + + YT A R+S VV ++ P Sbjct: 256 GGADLRVVQTLLGHADISTTQIYTHVA---------VDRLSQVVHANHP 295 >gi|310765754|gb|ADP10704.1| site-specific tyrosine recombinase XerC [Erwinia sp. Ejp617] Length = 345 Score = 116 bits (290), Expect = 6e-24, Method: Composition-based stats. Identities = 55/304 (18%), Positives = 108/304 (35%), Gaps = 31/304 (10%) Query: 64 PRKKPTTLKWLI---SEYRKSAHWGS--LAVNSRISFESYF---DQIIRKSGDFDYRKIT 115 P P +L L+ ++R+ +W L V + + ++ I + D + Sbjct: 24 PAHDPKSLYALLLRFVKWRRERNWSENTLKVQTHHDYRFICWASERGIHHAADVTRPVLE 83 Query: 116 T--KHIRSGVESRKH--TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171 +H+ + +P + L ++V F+W +Q + NP +E P+ + Sbjct: 84 RWQRHLYHYRKGNGEPLSPRTQRTALQPLQVWFRWLAKQNLILANPAADLELPRLEKHLP 143 Query: 172 RP-WTKEDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGV--QHLQNNIFSI 224 R + E ++ + G + R E L +G+R + R I +I Sbjct: 144 RTILSVEQVEDIVNRCDLNTLQGMRDRALLELLWSTGIRRGEVARLESWSADFSRKILTI 203 Query: 225 KTQKTGTIITVELPDGFMKLLA----------MTPIGKETFFINNDK-QKMNATQFSIWF 273 K + + + + L + G + F+ D + A + Sbjct: 204 VQGKGKQDRVIPVGERALWWLRHYLHEVRPEIVAVAGCKALFVAMDGVAGLTANGITHAV 263 Query: 274 KAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 AG+ K S H R AT + GA + A G ++V+ + YT+ + R Sbjct: 264 VPYLRAAGIEKGSCHLFRHAMATQMLENGADLRWIQAMLGHRSVESTQIYTQVSIRALQA 323 Query: 333 IKNS 336 + S Sbjct: 324 VHAS 327 >gi|241896013|ref|ZP_04783309.1| integrase/recombinase [Weissella paramesenteroides ATCC 33313] gi|241870744|gb|EER74495.1| integrase/recombinase [Weissella paramesenteroides ATCC 33313] Length = 308 Score = 116 bits (290), Expect = 6e-24, Method: Composition-based stats. Identities = 40/282 (14%), Positives = 94/282 (33%), Gaps = 31/282 (10%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQII---------RKSGDFDYRKITTKHIRSG 122 K L +Y + ++ ++ ++E + + + + + S Sbjct: 10 KQLFLDYLRIER--QYSLETQKAYEGDIAEFLTFLSGTQATKSIVLSNITSFDVRVFLSE 67 Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 + + + + ++S+R +++ + E VA NP + + K R + ++++ + Sbjct: 68 LYEKGDGSRTIARKVSSLRSFYRFLINNEMVAENPFVGIVLKKPGQHLPRYFYQKELTKM 127 Query: 183 KSFW-----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-- 235 + G + L E L +G R S+ +Q++ ++ + G + Sbjct: 128 FDVVMTDQSALGLRNHLLLEMLYGTGARVSEIANMTLQNVDSHARVVTITGKGNKTRIVP 187 Query: 236 ---ELPDGFMKLLAM--------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284 D K L F+N + K K+G+ + Sbjct: 188 FGRYAADALAKYLKTGRPVLASKQADTSNKLFLNQRGAPVTTAGIEYILKQIGKKSGLTQ 247 Query: 285 --SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 +AH R AT + A + G ++ + YT Sbjct: 248 EVTAHMFRHTFATDLLNNQADLRTVQQLLGHSSLSTTQIYTH 289 >gi|170734437|ref|YP_001766384.1| site-specific tyrosine recombinase XerC [Burkholderia cenocepacia MC0-3] gi|169817679|gb|ACA92262.1| tyrosine recombinase XerC [Burkholderia cenocepacia MC0-3] Length = 306 Score = 116 bits (290), Expect = 6e-24, Method: Composition-based stats. Identities = 45/279 (16%), Positives = 91/279 (32%), Gaps = 30/279 (10%) Query: 75 ISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV---ESRKHTP 130 I+ Y + H L+ ++ ++ D++ + + +T +R V + + Sbjct: 6 IAAYLSNLKHVRQLSEHTLRAYTHELDELKKLAAGRPLEALTAADMRGAVVRGHAAGLSA 65 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQFKSFW 186 S L++ R ++W ++ + NP V PKR+ + + +D M + Sbjct: 66 RSISHRLSAWRAFYRWFAQRVEMPANPVAGVRAPKREKSLPKALSVDDAVALMDAPLAGT 125 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRA-------------GVQHLQNNIFSIKTQKT---- 229 +EG + E SGLR ++ G L +++ + Sbjct: 126 TEGIRDHAILELFYSSGLRLAELVGLDVRYTQADGYRSAGWLDLAEAEVTVRGKGNKERK 185 Query: 230 ---GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-- 284 G+ L F++ +M+ K A AG+ Sbjct: 186 VPVGSKAIDALNAWLAVRGEFVKHDPHPLFVSVRGNRMSPGVVRERVKRAALAAGIPANV 245 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 H +R AT + + G +V + YT Sbjct: 246 HPHVLRHSFATHVLQSSGDLRAVQELLGHASVAATQIYT 284 >gi|329114345|ref|ZP_08243107.1| Tyrosine recombinase XerD [Acetobacter pomorum DM001] gi|326696421|gb|EGE48100.1| Tyrosine recombinase XerD [Acetobacter pomorum DM001] Length = 306 Score = 116 bits (290), Expect = 7e-24, Method: Composition-based stats. Identities = 47/284 (16%), Positives = 100/284 (35%), Gaps = 27/284 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESR---KHTPSSAIQFLTS 139 + A N+ ++E+ + TT+ +++ + + + + L+ Sbjct: 17 RAAAPNTLAAYEADLTSCAESLAREGQTLQTATTEGLQNWMAALVGSGQARRTVARRLSC 76 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----------- 188 +R + + +R+ A NP ++ PK +T R ++ ++ + +E Sbjct: 77 IRQFYLFLLREGMRADNPAAHLDSPKPRTPLPRFLSESEVLALLNACAEPDGASLPKKRR 136 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHL-QNNIFSIKTQKTGTIITVELPDGFMKLLAM 247 G + A E L SGLR S+ + + + + K G V L D + Sbjct: 137 GILAKAALELLYASGLRISELLALPRKAIAGDQRMIMVRGKGGRERLVPLSDSAREAAQA 196 Query: 248 TPIGKETF---FINNDK---QKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISA 298 F+ + + M F A +A ++ S H +R AT Sbjct: 197 LLEVDAHLESAFLFPGRDPAKPMTRQAFDRILHTVAIRAEIDPARLSPHVLRHSFATHLL 256 Query: 299 DAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKNSRRISS 341 GA L G + + YT +R++ ++ +++ Sbjct: 257 AHGADLRALQMLLGHADIATTQIYTHVQTERLQKAVQAHHPLAA 300 >gi|297183673|gb|ADI19798.1| site-specific recombinase xerd [uncultured alpha proteobacterium EB000_37G09] Length = 302 Score = 116 bits (290), Expect = 7e-24, Method: Composition-based stats. Identities = 52/280 (18%), Positives = 98/280 (35%), Gaps = 23/280 (8%) Query: 74 LISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHT 129 LI+ + + A ++ N+ +++ + + +T IR V+ Sbjct: 9 LITHFLSALAAERGVSENTLFGYKNDLMALHDSMA-VSFVVMTADDIRQSVQKFYIEGLA 67 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 + + L+++R W V NP L ++ PK + + D+ + S+ Sbjct: 68 ARTVSRRLSAVRQFAGWMVSDHIRQDNPSLFLDNPKLPDPLPKSLNEADVSSLITACSKL 127 Query: 190 SQPR-----LAFEFLLYSGLRCSDSCRAGVQHL-QNNIFSIKTQKTGTIITVELPDGFMK 243 P E + +GLR S+ +Q + + K G V L + Sbjct: 128 EPPYDLLMQAGLELMYSAGLRISELLSLRLQDFTADKDMLLIRGKGGRERMVPLTAIAIA 187 Query: 244 LLAM--------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKF 292 P + + Q+M +FS+ K A A +++ SAH +R Sbjct: 188 TARRWRDARDADGPDAETDQLLGYRSQEMTRQKFSLLLKQVARHADLDERKVSAHVLRHS 247 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 AT + GA L G + + YT+ + RL Sbjct: 248 FATHLLNRGADLRSLQMLLGHADIATTQIYTRTR-QDRLA 286 >gi|329724319|gb|EGG60831.1| tyrosine recombinase XerC [Staphylococcus epidermidis VCU144] Length = 296 Score = 116 bits (290), Expect = 7e-24, Method: Composition-based stats. Identities = 34/265 (12%), Positives = 94/265 (35%), Gaps = 20/265 (7%) Query: 85 GSLAVNSRISFESYFDQI-----IRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139 + + + S+ Q + ++ + + S + ++ + +++ Sbjct: 16 RNFSEYTLKSYHDDLVQFNNFLEREHLQLETFEYKDARNYLAFLYSNQLKRTTVSRKIST 75 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF----KSFWSEGSQPRLA 195 +R +++ + Q+ INP + + PK++ + + +E+M+ + +G + ++ Sbjct: 76 LRTFYEFWMTQDNSIINPFVQLVHPKKEKYLPQFFYEEEMEALFQTVEHDNKKGIRDKVI 135 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE--------LPDGFMKLLA 246 E L +G+R S+ ++ + N+ +K K + + + Sbjct: 136 IELLYATGIRVSELINIKLKDIDMNLPGVKVLGKGNKERFIPFGEFCRQSIERYLEEFQP 195 Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATK-AGV-NKSAHGVRKFSATISADAGATA 304 + +N + + AGV + H +R AT + GA Sbjct: 196 KQLANHDYLIVNMKGDPITERGVRYVLNDVVKRTAGVNDIHPHKLRHTFATHLLNQGADL 255 Query: 305 HELMATYGWKTVDQAETYTKGADRI 329 + + G + YT +++ Sbjct: 256 RTVQSLLGHANLSTTGRYTHVSNQQ 280 >gi|15640159|ref|NP_229786.1| site-specific tyrosine recombinase XerC [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121587730|ref|ZP_01677491.1| tyrosine recombinase XerC [Vibrio cholerae 2740-80] gi|147673673|ref|YP_001218291.1| site-specific tyrosine recombinase XerC [Vibrio cholerae O395] gi|153818950|ref|ZP_01971617.1| tyrosine recombinase XerC [Vibrio cholerae NCTC 8457] gi|153822328|ref|ZP_01974995.1| tyrosine recombinase XerC [Vibrio cholerae B33] gi|227080364|ref|YP_002808915.1| integrase/recombinase XerC [Vibrio cholerae M66-2] gi|229508406|ref|ZP_04397910.1| tyrosine recombinase XerC [Vibrio cholerae BX 330286] gi|229508913|ref|ZP_04398403.1| tyrosine recombinase XerC [Vibrio cholerae B33] gi|229517027|ref|ZP_04406473.1| tyrosine recombinase XerC [Vibrio cholerae RC9] gi|229606679|ref|YP_002877327.1| site-specific tyrosine recombinase XerC [Vibrio cholerae MJ-1236] gi|254851512|ref|ZP_05240862.1| tyrosine recombinase xerC [Vibrio cholerae MO10] gi|255743919|ref|ZP_05417874.1| tyrosine recombinase XerC [Vibrio cholera CIRS 101] gi|262151158|ref|ZP_06028297.1| tyrosine recombinase XerC [Vibrio cholerae INDRE 91/1] gi|262167027|ref|ZP_06034744.1| tyrosine recombinase XerC [Vibrio cholerae RC27] gi|298501104|ref|ZP_07010904.1| tyrosine recombinase XerC [Vibrio cholerae MAK 757] gi|34223078|sp|Q9KVL4|XERC_VIBCH RecName: Full=Tyrosine recombinase xerC gi|172047518|sp|A5F4I4|XERC_VIBC3 RecName: Full=Tyrosine recombinase xerC gi|254799360|sp|C3LPX0|XERC_VIBCM RecName: Full=Tyrosine recombinase xerC gi|9654528|gb|AAF93305.1| integrase/recombinase XerC [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121548029|gb|EAX58107.1| tyrosine recombinase XerC [Vibrio cholerae 2740-80] gi|126510512|gb|EAZ73106.1| tyrosine recombinase XerC [Vibrio cholerae NCTC 8457] gi|126520154|gb|EAZ77377.1| tyrosine recombinase XerC [Vibrio cholerae B33] gi|146315556|gb|ABQ20095.1| tyrosine recombinase XerC [Vibrio cholerae O395] gi|227008252|gb|ACP04464.1| integrase/recombinase XerC [Vibrio cholerae M66-2] gi|227011870|gb|ACP08080.1| integrase/recombinase XerC [Vibrio cholerae O395] gi|229346090|gb|EEO11062.1| tyrosine recombinase XerC [Vibrio cholerae RC9] gi|229354030|gb|EEO18963.1| tyrosine recombinase XerC [Vibrio cholerae B33] gi|229354679|gb|EEO19601.1| tyrosine recombinase XerC [Vibrio cholerae BX 330286] gi|229369334|gb|ACQ59757.1| tyrosine recombinase XerC [Vibrio cholerae MJ-1236] gi|254847217|gb|EET25631.1| tyrosine recombinase xerC [Vibrio cholerae MO10] gi|255738402|gb|EET93792.1| tyrosine recombinase XerC [Vibrio cholera CIRS 101] gi|262024545|gb|EEY43229.1| tyrosine recombinase XerC [Vibrio cholerae RC27] gi|262031052|gb|EEY49677.1| tyrosine recombinase XerC [Vibrio cholerae INDRE 91/1] gi|297540138|gb|EFH76199.1| tyrosine recombinase XerC [Vibrio cholerae MAK 757] Length = 311 Score = 116 bits (290), Expect = 7e-24, Method: Composition-based stats. Identities = 37/278 (13%), Positives = 94/278 (33%), Gaps = 21/278 (7%) Query: 68 PTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIR---KSGDFDYRKITTKHIRSGV 123 P L + + H L++ ++ +++ + + + + G + ++ + +R V Sbjct: 10 PDALAQPLERFYAYLHTEKGLSLYTQRNYKQQLETMTQYLVQVGLTHWTQLDSAWVRQLV 69 Query: 124 ESRKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 K SS L+S+R + + + + NP V P+++ + ++M Sbjct: 70 MQGKRQGMKASSIATRLSSLRSFLDFLILRGELQANPAKGVSAPRKQRTLPKNLDVDEMA 129 Query: 181 QFKSFW---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI---IT 234 Q + R E + +GLR ++ ++ + + I+ G + Sbjct: 130 QLLEVTDDDPLSIRDRAIMELMYGAGLRLAELVSIDIKDVNLSEGEIRVIGKGNKERKVW 189 Query: 235 V------ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSA 286 + + + F++ +++ K V + S Sbjct: 190 FAGQAQEWVGKWLKLRSQLADSAETALFVSKLGTRISHRSVQKRMAEWGQKQAVASHISP 249 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R AT ++ + G + + + YT Sbjct: 250 HKLRHSFATHMLESSNNLRAVQELLGHENIATTQIYTH 287 >gi|220933239|ref|YP_002512138.1| tyrosine recombinase XerC [Thioalkalivibrio sp. HL-EbGR7] gi|219994549|gb|ACL71151.1| tyrosine recombinase XerC [Thioalkalivibrio sp. HL-EbGR7] Length = 298 Score = 116 bits (290), Expect = 7e-24, Method: Composition-based stats. Identities = 36/269 (13%), Positives = 88/269 (32%), Gaps = 19/269 (7%) Query: 74 LISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV---ESRKHT 129 I Y + + ++ ++ ++ GD D+ + IR+ V + Sbjct: 8 WIDRYLRHLREERRYSPHTVENYARDLRRLCEAVGD-DWSSVKVHDIRALVAKEHRQGAG 66 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 + + L+++R F + +R+ NP L V PK + + + + + Sbjct: 67 SKTLQRLLSAIRGFFNYLIREGVADANPALDVRAPKSGRKLPGVLDVDQVARLLDLPGDE 126 Query: 190 S---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFMKLL 245 + + R E SGLR ++ + + ++ G + + + L Sbjct: 127 ALVVRDRAILELFYSSGLRLAELVGLDLVDVDLGDAQLRVTGKGRKARDLPIGRHAVAAL 186 Query: 246 AM--------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSAT 295 ++ F+ +++ A A G+++ H +R A+ Sbjct: 187 KAWLPMRAGLAAADEQALFVGQRGRRLGARAVQTRLARHAGLQGLDRRVHPHLLRHSFAS 246 Query: 296 ISADAGATAHELMATYGWKTVDQAETYTK 324 ++ + G + + YT Sbjct: 247 HLLESSGDLRAVQELLGHADISTTQVYTH 275 >gi|37525317|ref|NP_928661.1| site-specific tyrosine recombinase XerC [Photorhabdus luminescens subsp. laumondii TTO1] gi|37527576|ref|NP_930920.1| site-specific tyrosine recombinase XerC [Photorhabdus luminescens subsp. laumondii TTO1] gi|36784744|emb|CAE13652.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] gi|36787011|emb|CAE16085.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 376 Score = 116 bits (290), Expect = 7e-24, Method: Composition-based stats. Identities = 54/305 (17%), Positives = 108/305 (35%), Gaps = 32/305 (10%) Query: 64 PRKKPTTLKWLI---SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITT---K 117 P P +L L+ +R+ +W + + +F G + IT + Sbjct: 24 PAHDPKSLYALLLRFVAWRQERNWSETTLKVQTHHTYHFILWATDRGLYYAADITRPILE 83 Query: 118 HIRSGVESRKHT------PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171 + + + T + L ++V FKW +Q + NP +E P+ + Sbjct: 84 RYQRYLYQYRKTNGEPLSIRTQRTQLQPLQVWFKWLTKQNLILANPAADIELPREEKRLP 143 Query: 172 R-PWTKEDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--FSI 224 R + ++++ S G++ R E L +G+R S++ R + + + +I Sbjct: 144 RYILSIDEIEHILSLPDPNTLQGARDRALMELLWSTGIRRSEAARLDIYSIDGSRKTVTI 203 Query: 225 KTQKTGTIITVELPDGFMKLLA-----------MTPIGKETFFINNDKQKMNATQFSIWF 273 + K + L + + L +TP + F + + + Sbjct: 204 RQGKGNKDRVLPLGERALNWLQFYQQQVRPQLLVTPDIQSLFVAMDGLDGLQPNGITNAV 263 Query: 274 KAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 AG+ K H R AT + GA + A G +V+ + YT+ + R Sbjct: 264 SGYIRAAGIEKKGACHLFRHAMATQMLENGADLRWIQAMLGHASVESTQVYTQVSIRALQ 323 Query: 332 GIKNS 336 + S Sbjct: 324 AVHAS 328 >gi|319791651|ref|YP_004153291.1| integrase family protein [Variovorax paradoxus EPS] gi|315594114|gb|ADU35180.1| integrase family protein [Variovorax paradoxus EPS] Length = 317 Score = 115 bits (289), Expect = 7e-24, Method: Composition-based stats. Identities = 43/280 (15%), Positives = 87/280 (31%), Gaps = 29/280 (10%) Query: 73 WLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESR--- 126 I++Y + LA + + + + + + ++ T HIR + Sbjct: 14 DWIAKYLEHVRVERRLAARTVELYAFHLQALRENAAEANLPLDRVQTAHIRRWMAKLHSA 73 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 P L+ R ++W + + NP V PK + +D Q Sbjct: 74 GREPRGIALVLSCWRSFYRWLGHEGLIGFNPVQDVHAPKAGRPLPKALGVDDAVQLAELH 133 Query: 187 SE------GSQPRLAFEFLLYSGLRCSDSCR---------AGVQHLQNNIFSIKTQKTGT 231 E ++ R E L GLR S+ G L ++ K Sbjct: 134 DEDADPWIEARDRAIVEILYGCGLRVSELTGLDAQASNTALGWVDLDAKEANV-LGKGSK 192 Query: 232 IITVELPDGFMKLLA-----MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NK 284 V + + L F+++ +M++ + ++ KAG+ Sbjct: 193 RRIVPVGSKAAEALQEWLDVRGDRSVPALFVSSKGARMSSQAVWKLLRERSLKAGLAAPV 252 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R A+ + + + G + + YT+ Sbjct: 253 HPHMLRHSFASHVLQSSSDLRAVQELLGHANIATTQIYTR 292 >gi|309777265|ref|ZP_07672227.1| tyrosine recombinase XerC [Erysipelotrichaceae bacterium 3_1_53] gi|308914945|gb|EFP60723.1| tyrosine recombinase XerC [Erysipelotrichaceae bacterium 3_1_53] Length = 356 Score = 115 bits (289), Expect = 7e-24, Method: Composition-based stats. Identities = 51/344 (14%), Positives = 125/344 (36%), Gaps = 23/344 (6%) Query: 6 RLPPFVTKERTRHGKIIYYFRKGHGR--RIRLPYPHESTFIPAYMSALTGSTPKREYINS 63 R P+V + Y RK R + ++ +E+ + + S + + Sbjct: 24 RRKPWVACV------TVAYQRKDGARHQKRKIIGYYETEEMAEF-SLWNYNKNPVLFAEI 76 Query: 64 PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123 + T + + E+ S + +++ + +++ + + + + H + + Sbjct: 77 EKLGTITFENVYMEW-SSTKYKNISQTAINGYKAAYAR-CSSIWNVRMTDLKAMHFQRIM 134 Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV--ERPKRKTEGIRPWTKEDMQQ 181 + + SS ++ + M ++ ++AV+ + + N V R + E +P+T+ +++Q Sbjct: 135 DESTLSLSSDLKLRSLMMLVCEYAVQNDIIQKNYAKYVIINRKEDHPEIHKPFTEWEIEQ 194 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-KT--GTIITVELP 238 + ++Y+G R + + + +I+ KT G V + Sbjct: 195 LFDHDNIPFVD--TVLIMIYTGFRVGELFNIRREDVDVQNMTIRGGSKTEAGKNRLVPVH 252 Query: 239 DGFMKLLAMTPIGKETFFI--NNDKQKMNATQFSIW-FKAKATKAGVNKSAHGVRKFSAT 295 + K + + + I + +K N + F + H R AT Sbjct: 253 EKIQKYVMDYYLQNYEYLISDTDTGKKFNYHMYRNQYFDKIMDMLDMEHLPHDCRHTFAT 312 Query: 296 ISADAGATAHELMATYGWKTVDQAE-TYT-KGADRIRLGIKNSR 337 ++ GA + + G + E YT K ++R I + Sbjct: 313 RLSNYGANSTCIKKLIGHSSYATTEKIYTHKDVAQLRRAISTLK 356 >gi|213972135|ref|ZP_03400225.1| SAM-like protein [Pseudomonas syringae pv. tomato T1] gi|302062047|ref|ZP_07253588.1| Phage integrase:Phage integrase, N-terminal SAM-like protein [Pseudomonas syringae pv. tomato K40] gi|302131887|ref|ZP_07257877.1| Phage integrase:Phage integrase, N-terminal SAM-like protein [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213923112|gb|EEB56717.1| SAM-like protein [Pseudomonas syringae pv. tomato T1] Length = 320 Score = 115 bits (289), Expect = 7e-24, Method: Composition-based stats. Identities = 54/277 (19%), Positives = 103/277 (37%), Gaps = 32/277 (11%) Query: 84 WGSLA-VNSRISFESYFDQIIRKSGDF---DYRKITTKHI---RSGVESRKHTPSSAIQF 136 + +L +R ++++ + G ++R +T H+ R+ +E R ++ + Sbjct: 33 FANLDNPRTRRAYQNDLEDFCGFVGLASADEFRVVTRSHVLAWRAQLEHRGLAGATIRRK 92 Query: 137 LTSMRVLFKWAVRQE-YVAINPCLSVERPKRKT-EGIRPWTKED-----MQQFKSFWSEG 189 L ++ LF + NP V+RPK ++ EG P + ++ +G Sbjct: 93 LAALASLFDHLLESNAIAGGNPVHGVKRPKIESNEGKTPALGDHQAKALLEAPDETTLKG 152 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKT-QKTGTIITVELPDG------ 240 + R LLY GLR ++ V +Q+ I +K K G + + + Sbjct: 153 QRDRALLAVLLYHGLRREEAALLQVSDIQDRRGIQHLKVHGKGGKVRYLPMHPVAAGRIH 212 Query: 241 --FMKLLAMTPIGKETFFINNDKQ----KMNATQFSIWFKAKATKAGV---NKSAHGVRK 291 K FI + + A A A KAG+ HG+R Sbjct: 213 QYLESSGHHLADRKVPLFIPLRGKLTGAGITANGIYTVVAAYAKKAGIEVDGLGVHGLRA 272 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 +AT + + A ++ A G + + Y + +R Sbjct: 273 TAATNALEHEADIAKVQAWLGHANISTTKIYDRRENR 309 >gi|288929393|ref|ZP_06423238.1| site-specific recombinase, phage integrase family/ribosomal subunit interface protein [Prevotella sp. oral taxon 317 str. F0108] gi|288329495|gb|EFC68081.1| site-specific recombinase, phage integrase family/ribosomal subunit interface protein [Prevotella sp. oral taxon 317 str. F0108] Length = 293 Score = 115 bits (289), Expect = 7e-24, Method: Composition-based stats. Identities = 45/275 (16%), Positives = 95/275 (34%), Gaps = 28/275 (10%) Query: 76 SEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFD----YRKITTKHIRSGVESRKHTP 130 ++ + + + + S+ + D + + IR+ +ES Sbjct: 4 EQFLNYLQYELNRSELTIASYGDDLRAFEAFFKNKDTQLSWEAVDADLIRNWMESMMDKG 63 Query: 131 SSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 SA + L+++R +++ + + YV NP V PKR + + +M + Sbjct: 64 CSATTIQRRLSALRSFYRFGLTRGYVEKNPARGVVGPKRSRPLPQFLREGEMDRLLDEVP 123 Query: 188 EGS--QPRLAFEFLL---YSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGF 241 G + LA+ +L +G+R ++ + IK K + D Sbjct: 124 VGESYRDLLAYTIVLTFYSTGMRLAELVGLNDDSIDFGARVIKVLGKGSKQRLIPFADEL 183 Query: 242 MKLLAMTPIGKE--------TFFINNDKQKMNATQFSIWFKAKATKAGV----NKSAHGV 289 L ++ FF++ +++ + A+ A V +S H + Sbjct: 184 EAALKAYIARRDAEVARCDKAFFVDQRGERVKRGAVQNSVR--ASLAKVTSMKKRSPHVL 241 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 R AT + A + G +++ E YT Sbjct: 242 RHSFATAMLNNDAGLESVKKLLGHESLSTTEIYTH 276 >gi|260893825|ref|YP_003239922.1| integrase family protein [Ammonifex degensii KC4] gi|260865966|gb|ACX53072.1| integrase family protein [Ammonifex degensii KC4] Length = 315 Score = 115 bits (289), Expect = 7e-24, Method: Composition-based stats. Identities = 46/282 (16%), Positives = 103/282 (36%), Gaps = 18/282 (6%) Query: 58 REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF--DYRKIT 115 R+ + +T + ++ E+ A + + ++ + R+ D DY ++ Sbjct: 2 RKLFRLSERLQSTWQEVLEEFCLHQQAQGKAERTLYDYRAWIGRFFRRHPDAWGDYERLR 61 Query: 116 TKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175 + P++ +++ F W VR+ Y+ NP +++ +R+ RP + Sbjct: 62 RAVLEHFAHLSHKAPATFNMARKYLKLFFAWCVREGYLPANPVDGIKK-RREDGTPRPVS 120 Query: 176 KEDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI----KTQ 227 E +Q+ + G + F L +G+R ++ + +H + + Sbjct: 121 LEAVQKLLTACDRKSFTGLRDYALILFQLDTGVRPGEALKLLPEHFNLRSLEVYIPAQVS 180 Query: 228 KTGTIITVELPDG-------FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA 280 KT TV + + + K F + Q M + ++ + +A Sbjct: 181 KTRAARTVVISPQTARAVQRLLAVRPAAWGSKAPVFCSETGQPMQVSSWTHRLALISRRA 240 Query: 281 GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 GV + + +R +AT GA+A + G + Y Sbjct: 241 GVKVTPYQLRHTAATELLRGGASAFAVARQLGHLHLSTTRRY 282 >gi|167841723|ref|ZP_02468407.1| integrase family protein [Burkholderia thailandensis MSMB43] Length = 368 Score = 115 bits (289), Expect = 7e-24, Method: Composition-based stats. Identities = 53/377 (14%), Positives = 104/377 (27%), Gaps = 52/377 (13%) Query: 1 MTPSLRLPPFVTKERTRHGKIIYYFR--KGHGRRIRLPYPHESTFIPAYMSALTGSTPKR 58 M + P + ++ + + R+ + Y S + Sbjct: 1 MIGRRKTPSHLPARVYEKHGTWWFVDKDRKWHKLCRVKEGI----VRLYESLAEYTRDSD 56 Query: 59 EYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF-DYRKITTK 117 PT L I + A +R ++ I R+ G + Sbjct: 57 GKAALENTMPTLLDDWIKRKL-----PTYAPKTRSNYLKMIGLIRREFGPQWLIEDVRPT 111 Query: 118 HIRSGVES-RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176 + ++ PSS+ ++ + ++F AVR+ NP + + K R T Sbjct: 112 DVARFLDKHFHDKPSSSNKYKALLSLIFMHAVRRGLRDRNPAREIGAAREKKR-DRYITD 170 Query: 177 EDMQQFKS--------FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228 ++ ++ S + + R D Q++ + S K Sbjct: 171 AELDAVRAAVIASADYKTSSARSILCLIDLAYQTAQRIGDLLALNWQNVSDEGISFHPSK 230 Query: 229 T----GTIITVELPDGFMKLLAMTPIGKET----FFINNDKQKMNATQFSIWFKAKATKA 280 T G + +E+ D L GK + + +K +A Sbjct: 231 TVNSSGVRLLIEMTDDLRATLDQARGGKVMAIGPVICTHTGGRFTYIGAYSGWKRACDRA 290 Query: 281 -------------------GVNKSAHGVRKFSATIS-ADAGATAHELMATYGWKTVDQAE 320 + H +R + T GA A + + G T Sbjct: 291 RAAYEKACAEKGIAPDPKHLIGMHFHDLRAKALTDLKRQRGAAAAQ--SLAGHTTEGMTA 348 Query: 321 TYTKGADRIRLGIKNSR 337 YTK + R+ + Sbjct: 349 HYTKAREVERVQPVPMK 365 >gi|320321405|gb|EFW77525.1| phage integrase family site specific recombinase [Pseudomonas syringae pv. glycinea str. B076] gi|320331161|gb|EFW87128.1| phage integrase family site specific recombinase [Pseudomonas syringae pv. glycinea str. race 4] gi|330882731|gb|EGH16880.1| phage integrase family site specific recombinase [Pseudomonas syringae pv. glycinea str. race 4] Length = 320 Score = 115 bits (289), Expect = 7e-24, Method: Composition-based stats. Identities = 54/277 (19%), Positives = 106/277 (38%), Gaps = 32/277 (11%) Query: 84 WGSLA-VNSRISFESYFDQIIRKSGDF---DYRKITTKHI---RSGVESRKHTPSSAIQF 136 + +L +R ++++ G D+R++T H+ R+ +E R ++ + Sbjct: 33 FANLDNTRTRRAYQNDLTDFSAFIGLASADDFRQVTRSHVLAWRANLEQRGLAGATIRRK 92 Query: 137 LTSMRVLFKWAVRQE-YVAINPCLSVERPKRKT-EGIRPWTKED-----MQQFKSFWSEG 189 L ++ LF + NP V+RPK ++ EG P + ++ +G Sbjct: 93 LAALASLFDHLLESNAIAGGNPVHGVKRPKIESNEGKTPALGDHQAKALLEAPDESTLKG 152 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKT-QKTGTIITVELPDG------ 240 + R LLY GLR ++ + V + + I +K K G + + L Sbjct: 153 LRDRAMLAVLLYHGLRREEAAQLQVSDIQERRGIQHLKIHGKGGKVRYLPLHPVAAGRIH 212 Query: 241 --FMKLLAMTPIGKETFFINNDKQK----MNATQFSIWFKAKATKAGV---NKSAHGVRK 291 + K FI+ + ++A +A KAG+ HG+R Sbjct: 213 WYLERSGHHLDDKKVPLFISLRGKSTGASISANGIYTVVEAYTKKAGIEVAGLGVHGLRA 272 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 +AT + + A ++ A G + + Y + +R Sbjct: 273 TAATNALEHEADIAKVQAWLGHANISTTKIYDRRENR 309 >gi|307545255|ref|YP_003897734.1| phage integrase family protein [Halomonas elongata DSM 2581] gi|307217279|emb|CBV42549.1| phage integrase family protein [Halomonas elongata DSM 2581] Length = 342 Score = 115 bits (289), Expect = 7e-24, Method: Composition-based stats. Identities = 45/286 (15%), Positives = 92/286 (32%), Gaps = 19/286 (6%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR-KHTP 130 L Y + ++ + ++ + + +T I S ++ R + Sbjct: 61 GRLFDRYEAEIIPAKPSPETQRANRQELKRLRAVFSNCEPEDLTVHDIYSFMDKRGAQSK 120 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 + A L ++ +F++ R + NP V + K + T + ++F S Sbjct: 121 TQANHELALLKHVFRYGQRWGVIEHNPADPVTKFKLRPRDRYV-TDNEFRRFLRQTSP-- 177 Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA---- 246 R +GLR D + LQ++ ++T K + D +L+ Sbjct: 178 WVRRYALLKYKTGLRQKDMLGLRLDQLQSDGILLRTSKASKQAVIPWDDELRQLIREIQA 237 Query: 247 ---MTPIGKETFFINNDKQKMNATQFSIWF----KAKATKAGVNK-SAHGVRKFSATISA 298 T F + + N QF + + + GV + + H +R AT + Sbjct: 238 DNLARGKQGPTLFCKRNGEPYNKDQFHSRWQYGMRLAIQEGGVERFTEHDLRAKHATDAQ 297 Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344 G + A E Y + + +R+ D Sbjct: 298 SQGLD---VQANLQHSDKRTTEVYLRAKEVLRVSALGLDEFVDAPD 340 >gi|238763615|ref|ZP_04624575.1| Tyrosine recombinase [Yersinia kristensenii ATCC 33638] gi|238698093|gb|EEP90850.1| Tyrosine recombinase [Yersinia kristensenii ATCC 33638] Length = 263 Score = 115 bits (289), Expect = 7e-24, Method: Composition-based stats. Identities = 40/237 (16%), Positives = 83/237 (35%), Gaps = 16/237 (6%) Query: 104 RKSGDFDYRKITTKHIRSGVESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160 + G ++ + +RS V K SS L+++R W V Q + +NP Sbjct: 5 EQMGLAHWQTLDAAQVRSLVSRSKRAGLHSSSLALRLSALRSFLNWLVSQGVMQVNPAKG 64 Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL 217 V P+ + +++ + + R E + +GLR S+ +H+ Sbjct: 65 VSTPRSGRHLPKNIDVDEVDKLLDIDLNDPLAVRDRAMLEVMYGAGLRLSELVGMNCKHV 124 Query: 218 QNNIFSIKTQKTGTI--------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF 269 + G+ V+ + +++L + + F+ N ++++A Sbjct: 125 DLASGEVWVMGKGSKERKVPIGKTAVKWLEHWLELRELFEPQDDAIFLANTGKRISARNV 184 Query: 270 SIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 F K GV + H +R AT ++ + G + + YT Sbjct: 185 QKRFAEWGVKQGVSSHIHPHKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTH 241 >gi|255029340|ref|ZP_05301291.1| hypothetical protein LmonL_09813 [Listeria monocytogenes LO28] Length = 450 Score = 115 bits (289), Expect = 7e-24, Method: Composition-based stats. Identities = 39/278 (14%), Positives = 97/278 (34%), Gaps = 27/278 (9%) Query: 77 EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK------ITTKHIRSGVESRKHTP 130 +Y S + +VN+ ++E+ R + + + + ++ + + Sbjct: 13 DYLHSER--NYSVNTSTAYENDLLDFRRFLNEQAITTYQQVTFLDVRIYLTELKQKSFSR 70 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ-----FKSF 185 ++ + ++S+R + + +R+ + NP V K + + + E+M+ ++ Sbjct: 71 TTVARKISSLRSFYTFLLRENVINENPFTYVSHAKNQLRLPKFFYSEEMEALFQVVYEDN 130 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVEL------- 237 + + R+ E L +G+R S+ + L + +I K V Sbjct: 131 ETLTLRDRVLLEVLYGTGIRVSECAGILLPDLDTSYQAILIRGKGNKERYVPFGAYAEDA 190 Query: 238 ----PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRK 291 + L++ + +N+ + +KA + + H +R Sbjct: 191 ITDYLPERVNLMSRYKKSHDALLVNHYGDPLTTRGIRYCLTKIISKASLTRKIHPHMLRH 250 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 AT + GA + G ++ + YT R Sbjct: 251 TFATDLLNNGADMRTVQELLGHASLSSTQIYTHVTKRA 288 >gi|228988955|ref|ZP_04148994.1| DNA integration/recombination/invertion protein [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229159077|ref|ZP_04287131.1| DNA integration/recombination/invertion protein [Bacillus cereus ATCC 4342] gi|228624403|gb|EEK81176.1| DNA integration/recombination/invertion protein [Bacillus cereus ATCC 4342] gi|228770774|gb|EEM19300.1| DNA integration/recombination/invertion protein [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 369 Score = 115 bits (289), Expect = 7e-24, Method: Composition-based stats. Identities = 47/312 (15%), Positives = 107/312 (34%), Gaps = 38/312 (12%) Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVE 124 TL+ ++ + + S+ ++ + + ++ + +I G K+ HI+ + Sbjct: 60 PSKVTLEDYLNHWLEIKS-MSIERSTFVGYRAFINQHVIPSIGMVTLHKLNVMHIQKCYK 118 Query: 125 SRKHTPSSAIQFLTSMRVL---FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 + + L R+L AV+Q ++ NP E PK++ I+ WT+E++++ Sbjct: 119 TAIDRGIANNSVLLMHRILKSALNLAVKQNIISRNPADFAEIPKKERTSIQTWTEEEVKK 178 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--------------NNIFSIKTQ 227 F S+ S+ + + + +G+R + Q + +N + Sbjct: 179 FL-LHSQESRYHIGYLLAITTGMRMGEVLGLRWQDVDFEKHTVTINQTSGHDNQIKKTAK 237 Query: 228 KTGTIITVELPDGFMKLLAMTPI--------------GKETFFINNDKQKMNATQFSIWF 273 + T+ +P ++ L + + N + F F Sbjct: 238 TNSSKRTIPVPKETIESLKKHKVLINQEKLRLGSAYQDFDLINCNEFGMIIKKANFRKNF 297 Query: 274 KAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRL 331 AGV + H +R AT+ G + G + Y+ + Sbjct: 298 IRAIHNAGVKEIKFHDLRHTHATLLLKQGVNPKIISERLGHTDISMTLSVYSHVL--PNM 355 Query: 332 GIKNSRRISSVV 343 + + S + Sbjct: 356 QEEAVKNFSKSI 367 >gi|238784731|ref|ZP_04628734.1| Tyrosine recombinase [Yersinia bercovieri ATCC 43970] gi|238714327|gb|EEQ06336.1| Tyrosine recombinase [Yersinia bercovieri ATCC 43970] Length = 267 Score = 115 bits (289), Expect = 7e-24, Method: Composition-based stats. Identities = 40/242 (16%), Positives = 81/242 (33%), Gaps = 16/242 (6%) Query: 99 FDQIIRKSGDFDYRKITTKHIRSGVESRKH---TPSSAIQFLTSMRVLFKWAVRQEYVAI 155 ++ + G ++ + +RS V K SS L+++R W V Q + Sbjct: 4 LMEMGEQMGLAHWQTLDAAQVRSLVSRSKRAGLHASSLALRLSALRSFLNWLVSQGVMQA 63 Query: 156 NPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQPRLAFEFLLYSGLRCSDSCRA 212 NP V P+ + +++ + + R E + +GLR S+ Sbjct: 64 NPAKGVSTPRSGRHLPKNIDVDEVDKLLDIDLNDPLAVRDRAMLEVMYGAGLRLSELVGM 123 Query: 213 GVQHLQNNIFSIKTQKTGTI--------ITVELPDGFMKLLAMTPIGKETFFINNDKQKM 264 +H+ + G+ V ++ L + + F+ N +++ Sbjct: 124 NCKHVDLASGEVWVMGKGSKERKVPIGKTAVTWLYHWLALRELFEPQDDAIFLANTGKRI 183 Query: 265 NATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 +A F K GV + H +R AT ++ + G + + Y Sbjct: 184 SARNVQKRFAEWGVKQGVSSHIHPHKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIY 243 Query: 323 TK 324 T Sbjct: 244 TH 245 >gi|239908080|ref|YP_002954821.1| site-specific recombinase [Desulfovibrio magneticus RS-1] gi|239797946|dbj|BAH76935.1| site-specific recombinase [Desulfovibrio magneticus RS-1] Length = 410 Score = 115 bits (289), Expect = 7e-24, Method: Composition-based stats. Identities = 49/275 (17%), Positives = 88/275 (32%), Gaps = 17/275 (6%) Query: 70 TLKWLI-SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK- 127 T ++Y A + R + E + + G + I H++ + + Sbjct: 107 TFADYCANDYLPLARVTKKPESIRKTEEHVKNWLGPVVGRLPLKNIRQMHMQKVLLAMAN 166 Query: 128 --HTPSSAIQFLTSMRVLFKWAVRQEYVAI-NPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 +P S + R ++ A +V + +P V PK E R ++ + + Sbjct: 167 AGRSPRSIQYVFATFRAIWNHARNNGFVQVQSPTKGVALPKVNNERKRYLSRPEADALLA 226 Query: 185 FWSEGSQPRLAFEFL-LYSGLRCSDSCRAGVQ--HLQNNIFSIKTQKTGTIITVELPDGF 241 + S L L +G+R S+ L I K + + Sbjct: 227 ELATRSPQTHDLALLSLDTGMRFSEVTGLTWGCVDLDKGRIDILNAKGEKDRAIPMTARV 286 Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK---------SAHGVRKF 292 +L G I + + S F K G+NK S H +R Sbjct: 287 KELFESMTPGASNELIFKSRVGGQIGKISKSFDLAVEKLGLNKDVDDPKQIFSFHCLRHT 346 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 A+ +AG + + T G T + Y+ AD Sbjct: 347 CASWLIEAGTDLYVVQKTLGHSTPVVTQRYSHVAD 381 >gi|254824662|ref|ZP_05229663.1| integrase/recombinase XerC [Listeria monocytogenes FSL J1-194] gi|293593901|gb|EFG01662.1| integrase/recombinase XerC [Listeria monocytogenes FSL J1-194] Length = 300 Score = 115 bits (289), Expect = 7e-24, Method: Composition-based stats. Identities = 38/273 (13%), Positives = 95/273 (34%), Gaps = 27/273 (9%) Query: 77 EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK------ITTKHIRSGVESRKHTP 130 +Y S + +VN+ ++E+ R + + + + ++ + + Sbjct: 13 DYLHSER--NYSVNTSTAYENDLLDFRRFLNEQAITTYQQVTFLDVRIYLTELKQKSFSR 70 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ-----FKSF 185 ++ + ++S+R + + +R+ + NP V K + + + E+M+ ++ Sbjct: 71 TTVARKISSLRSFYTFLLRENVINENPFTYVSHAKNQLRLPKFFYSEEMEALFQVVYEDN 130 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVEL------- 237 + + R+ E L +G+R S+ + L + +I K V Sbjct: 131 ETLTLRDRVLLEVLYGTGIRVSECAGILLPDLDTSYQAILIRGKGNKERYVPFGVYAEDA 190 Query: 238 ----PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRK 291 L++ + +N+ + +KA + + H +R Sbjct: 191 ITDYLPERANLMSHYKKSHDALLVNHYGDPLTTRGIRYCLSKIISKASLTRKIHPHMLRH 250 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTK 324 AT + GA + G ++ + YT Sbjct: 251 TFATDLLNNGADMRTVQELLGHASLSSTQIYTH 283 >gi|154252172|ref|YP_001412996.1| tyrosine recombinase XerD [Parvibaculum lavamentivorans DS-1] gi|154156122|gb|ABS63339.1| tyrosine recombinase XerD [Parvibaculum lavamentivorans DS-1] Length = 319 Score = 115 bits (289), Expect = 7e-24, Method: Composition-based stats. Identities = 48/279 (17%), Positives = 91/279 (32%), Gaps = 34/279 (12%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRKH---TPSSAIQFLTS 139 A N+ ++E D + + IR +E+ + S+A + L++ Sbjct: 23 RGAARNTLDAYERDLKDFSGFLVSRGRDLVQASANDIRQYLENLSDQGLSASTAARRLSA 82 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS--------- 190 +R + + +PC S+E P+R + T E++ S Sbjct: 83 IRQFHGFLFAEGVRTDDPCGSIEGPRRARPLPKTLTVEEVDALLSAAQRAEDGRTQEESV 142 Query: 191 ----QPRLA--FEFLLYSGLRCSDSCRAGVQHLQN-NIFSIKTQKTGTIITVELPDGFMK 243 + RL E L +GLR S+ + ++ F + K G V L + Sbjct: 143 LAYKRARLVCLMEVLYATGLRVSELVGLPLSAVRGQERFLAVSGKGGRERLVPLSETARA 202 Query: 244 LLAM--------TPIGKETFFINNDKQ--KMNATQFSIWFKAKATKAGVNKS---AHGVR 290 + + + + + +F+ K A AG++ S H +R Sbjct: 203 AIDAYLPLRSLRLGEQVSPWLFPSRGRQGHLTRHRFAQLLKDLAVAAGLDASRVSPHTLR 262 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 A+ GA + G + + YT D Sbjct: 263 HAFASHLLANGADLRAVQQMLGHADISTTQIYTHVLDER 301 >gi|154498007|ref|ZP_02036385.1| hypothetical protein BACCAP_01987 [Bacteroides capillosus ATCC 29799] gi|150272997|gb|EDN00154.1| hypothetical protein BACCAP_01987 [Bacteroides capillosus ATCC 29799] Length = 344 Score = 115 bits (289), Expect = 7e-24, Method: Composition-based stats. Identities = 50/319 (15%), Positives = 104/319 (32%), Gaps = 38/319 (11%) Query: 46 AYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK 105 Y+ G P+ ++ ++ L + +S + S+ +Y + K Sbjct: 41 RYIKIERGCVPRSTDLDQ-----ISIDDLDLDLVRSVKLSDVY-----SYMNYLSRDRAK 90 Query: 106 SGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERP 164 + TP++ + + ++R +K+ + + + NP ++ P Sbjct: 91 HANSPDTG------------YGLTPAARARKIAAIRSFYKYITSKAKLMDENPMQDLDSP 138 Query: 165 KRKTEGIRPWTKEDMQQFKSFWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222 + K + ++ Q ++ R L GLR S+ + ++ + Sbjct: 139 RLKKALPHYLSLDESIQLLESVDGENKERDYCILIIFLNCGLRISELVGLNLTDIRKDQL 198 Query: 223 SIKTQKTGTIITV-------ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKA 275 + + I + D I K FI +M K Sbjct: 199 RVLGKGNKERILFLNEACRQAIDDWLAVRGTQGIIDKNALFITRRHTRMTTDAVHYMIKN 258 Query: 276 KATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRL 331 + T AG++ SAH +R +AT+ G L G ++ + YT +D +R Sbjct: 259 RLTAAGLDASMYSAHKLRHTAATLMLQNGVDVRTLQEVLGHDHLNTTQIYTHVDSDDLRT 318 Query: 332 GIKN--SRRISSVVDSDDP 348 K R+ + P Sbjct: 319 AAKANPLGRVGRKKSTPPP 337 >gi|30265160|ref|NP_847537.1| prophage LambdaBa03, site-specific recombinase phage integrase family protein protein [Bacillus anthracis str. Ames] gi|47778394|ref|YP_022022.2| prophage lambdaba03, site-specific recombinase phage integrase family protein protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49187970|ref|YP_031223.1| prophage LambdaBa03, site-specific recombinase phage integrase family protein protein [Bacillus anthracis str. Sterne] gi|165869874|ref|ZP_02214531.1| prophage LambdaBa03, site-specific recombinase, phage integrase family [Bacillus anthracis str. A0488] gi|167635252|ref|ZP_02393567.1| prophage LambdaBa03, site-specific recombinase, phage integrase family [Bacillus anthracis str. A0442] gi|167642002|ref|ZP_02400235.1| prophage LambdaBa03, site-specific recombinase, phage integrase family [Bacillus anthracis str. A0193] gi|170687981|ref|ZP_02879194.1| prophage LambdaBa03, site-specific recombinase, phage integrase family [Bacillus anthracis str. A0465] gi|170707721|ref|ZP_02898172.1| prophage LambdaBa03, site-specific recombinase, phage integrase family [Bacillus anthracis str. A0389] gi|177652943|ref|ZP_02935270.1| prophage LambdaBa03, site-specific recombinase, phage integrase family [Bacillus anthracis str. A0174] gi|190567810|ref|ZP_03020722.1| prophage LambdaBa03, site-specific recombinase, phage integrase family [Bacillus anthracis Tsiankovskii-I] gi|227817893|ref|YP_002817902.1| prophage LambdaBa03, site-specific recombinase, phage integrase family [Bacillus anthracis str. CDC 684] gi|229603805|ref|YP_002869354.1| prophage LambdaBa03, site-specific recombinase, phage integrase family [Bacillus anthracis str. A0248] gi|254686439|ref|ZP_05150298.1| prophage LambdaBa03, site-specific recombinase, phage integrase family protein [Bacillus anthracis str. CNEVA-9066] gi|254724438|ref|ZP_05186222.1| prophage LambdaBa03, site-specific recombinase, phage integrase family protein [Bacillus anthracis str. A1055] gi|254735645|ref|ZP_05193352.1| prophage LambdaBa03, site-specific recombinase, phage integrase family protein [Bacillus anthracis str. Western North America USA6153] gi|254744268|ref|ZP_05201948.1| prophage LambdaBa03, site-specific recombinase, phage integrase family protein [Bacillus anthracis str. Kruger B] gi|254755566|ref|ZP_05207599.1| prophage LambdaBa03, site-specific recombinase, phage integrase family protein [Bacillus anthracis str. Vollum] gi|254757021|ref|ZP_05209049.1| prophage LambdaBa03, site-specific recombinase, phage integrase family protein [Bacillus anthracis str. Australia 94] gi|30259837|gb|AAP29023.1| prophage LambdaBa03, site-specific recombinase, phage integrase family [Bacillus anthracis str. Ames] gi|47552099|gb|AAT34497.2| prophage LambdaBa03, site-specific recombinase, phage integrase family [Bacillus anthracis str. 'Ames Ancestor'] gi|49181897|gb|AAT57273.1| prophage LambdaBa03, site-specific recombinase, phage integrase family [Bacillus anthracis str. Sterne] gi|164714197|gb|EDR19717.1| prophage LambdaBa03, site-specific recombinase, phage integrase family [Bacillus anthracis str. A0488] gi|167510052|gb|EDR85465.1| prophage LambdaBa03, site-specific recombinase, phage integrase family [Bacillus anthracis str. A0193] gi|167529295|gb|EDR92047.1| prophage LambdaBa03, site-specific recombinase, phage integrase family [Bacillus anthracis str. A0442] gi|170127278|gb|EDS96154.1| prophage LambdaBa03, site-specific recombinase, phage integrase family [Bacillus anthracis str. A0389] gi|170668090|gb|EDT18840.1| prophage LambdaBa03, site-specific recombinase, phage integrase family [Bacillus anthracis str. A0465] gi|172081718|gb|EDT66788.1| prophage LambdaBa03, site-specific recombinase, phage integrase family [Bacillus anthracis str. A0174] gi|190561226|gb|EDV15199.1| prophage LambdaBa03, site-specific recombinase, phage integrase family [Bacillus anthracis Tsiankovskii-I] gi|227006502|gb|ACP16245.1| prophage LambdaBa03, site-specific recombinase, phage integrase family [Bacillus anthracis str. CDC 684] gi|229268213|gb|ACQ49850.1| prophage LambdaBa03, site-specific recombinase, phage integrase family [Bacillus anthracis str. A0248] Length = 301 Score = 115 bits (289), Expect = 7e-24, Method: Composition-based stats. Identities = 43/293 (14%), Positives = 103/293 (35%), Gaps = 27/293 (9%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFES----YFDQIIRKSGDFDYRKITTKHIRSGVE-- 124 LK L+ E+ + + + ++ + D + T HI+ V+ Sbjct: 2 LKDLLKEFVFDLKIKNYSDRTIDTYNYNVGQLITYLNEHHEVNDVEDVATFHIKKFVQHQ 61 Query: 125 -SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 S + + S+R +K+ V +EYV++N ++ K E I+ +T +++ + Sbjct: 62 ISLGKKANYINTLIKSLRSFYKYLVVEEYVSVNIMNKIKLLKEDVEVIKTFTDDEVAKMI 121 Query: 184 SFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD 239 + ++ ++ + +G+R S+ + + IK K V + Sbjct: 122 EAYDFKTYLNARNKVIIAMFVDTGMRMSELINLQSSWIYDTSLRIK-GKGSKWRHVPMSL 180 Query: 240 GFMKLL-----------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG----VNK 284 K + + + +F++ + + Q K +AG + Sbjct: 181 MLKKYMIRYERIKAKYFEKKALEHDNYFLSRAGKPICTVQIENIVKIAGLRAGVREDIRC 240 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 S H VR ++ + G + G + + + Y +G + + + Sbjct: 241 SPHTVRHYAIQSNLRNGLDLYSCSKIAGHENIQVTKRYLQGLEMENILEMAQK 293 >gi|320641462|gb|EFX10896.1| Site-specific recombinase, phage integrase family protein [Escherichia coli O157:H7 str. G5101] Length = 229 Score = 115 bits (289), Expect = 7e-24, Method: Composition-based stats. Identities = 49/228 (21%), Positives = 84/228 (36%), Gaps = 18/228 (7%) Query: 6 RLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65 +LPP V + Y K R ES + A L K E + R Sbjct: 12 KLPPKVYPNK------YSYVWKPTSR--------ESVTLTAIEDGLAALWKKYEETVNHR 57 Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125 + T L ++ SA++ L+ ++ + + +++ G + +HIR ++ Sbjct: 58 DRAMTFGRLWEKFLASAYYSELSPRTQKDYLQHQKKLLAVFGKVLADSVKPEHIRRYMDK 117 Query: 126 RKH-TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 R + + A +SM ++ W + YV NPC V + K K T ++ Q S Sbjct: 118 RGEQSKTQANHEKSSMSRVYSWGYERGYVKANPCAGVSKFKAKNRERYV-TDKEYQAVLS 176 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232 +A E R SD + + N+ I+ KTG Sbjct: 177 VAPL--PVFIAMEIAYLCAARVSDVLSLKWEQIGNDGIFIQQGKTGKK 222 >gi|259909522|ref|YP_002649878.1| site-specific tyrosine recombinase XerC [Erwinia pyrifoliae Ep1/96] gi|224965144|emb|CAX56676.1| site-specific tyrosine recombinase [Erwinia pyrifoliae Ep1/96] Length = 345 Score = 115 bits (289), Expect = 7e-24, Method: Composition-based stats. Identities = 55/304 (18%), Positives = 107/304 (35%), Gaps = 31/304 (10%) Query: 64 PRKKPTTLKWLISEY---RKSAHWGS--LAVNSRISFESYF---DQIIRKSGDFDYRKIT 115 P P +L L+ + R+ +W L V + + ++ I + D + Sbjct: 24 PAHDPKSLYALLLRFVKWRRERNWSETTLKVQTHHGYRFICWAQERGIHHAADVTRPVLE 83 Query: 116 T--KHIRSGVESRKH--TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171 +H+ + +P + L ++V F+W +Q + NP +E P+ + Sbjct: 84 RWQRHLYRYRKGNGEPLSPRTQRTALQPLQVWFRWLAKQNLILANPAADLELPRLEKHLP 143 Query: 172 RP-WTKEDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGV--QHLQNNIFSI 224 R + E ++ + G + R E L +G+R + R I +I Sbjct: 144 RTILSVEQVEDIVNLCDLNTLQGMRDRALLELLWSTGIRRGEVARLETWSADFSRKILTI 203 Query: 225 KTQKTGTIITVELPDGFMKLLA----------MTPIGKETFFINNDK-QKMNATQFSIWF 273 K + + + + L + G + F+ D + A + Sbjct: 204 VQGKGKQDRVIPVGERALWWLRHYLHEVRPEIVAVAGCKALFVAMDGVAGLTANGITHAV 263 Query: 274 KAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 AG+ K S H R AT + GA + A G ++V+ + YT+ + R Sbjct: 264 VPYLRAAGIEKGSCHLFRHAMATQMLENGADLRWIQAMLGHRSVESTQIYTQVSIRALQA 323 Query: 333 IKNS 336 + S Sbjct: 324 VHAS 327 >gi|317489856|ref|ZP_07948349.1| tyrosine recombinase XerD [Eggerthella sp. 1_3_56FAA] gi|325829949|ref|ZP_08163407.1| tyrosine recombinase XerD [Eggerthella sp. HGA1] gi|316911011|gb|EFV32627.1| tyrosine recombinase XerD [Eggerthella sp. 1_3_56FAA] gi|325488116|gb|EGC90553.1| tyrosine recombinase XerD [Eggerthella sp. HGA1] Length = 297 Score = 115 bits (289), Expect = 8e-24, Method: Composition-based stats. Identities = 37/277 (13%), Positives = 78/277 (28%), Gaps = 28/277 (10%) Query: 76 SEYRKSAHWGSL----AVNSRISFESYFDQIIRKSGDFDYRKITTKH------IRSGVES 125 YR+ + + + + ++ + + + S + Sbjct: 3 ELYREYLAYLRVERGSSPLTVSAYAADLKDYAQFLEKRGVESLDDVDREVIVAYESDLFG 62 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 R + S+ + ++ ++ ++ VR+ Y NP +++ PK + + S Sbjct: 63 RGYAASTVDRHVSVLKGFHRFLVREGYARRNPADTIQLPKAPDRLPDVLSVAQVDAMLSR 122 Query: 186 W----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE----- 236 + + E L GLR S+ + + G + Sbjct: 123 PLDEGPLALRNQAILEVLYGCGLRVSECTGLDLGDAILEEGYLHILGKGNKERIAPISGA 182 Query: 237 --------LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAH 287 L G +L+ F+N ++ GV N H Sbjct: 183 ALRALRDYLERGRPELVRSYAKSTSAVFLNARGGRLTRQSVHSLVAEAGRFIGVANLHPH 242 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 +R AT GA + G + + YT Sbjct: 243 TLRHSFATHMLAGGADLRVIQEILGHSDISTTQIYTH 279 >gi|253690334|ref|YP_003019524.1| tyrosine recombinase XerC [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251756912|gb|ACT14988.1| tyrosine recombinase XerC [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 311 Score = 115 bits (289), Expect = 8e-24, Method: Composition-based stats. Identities = 46/259 (17%), Positives = 90/259 (34%), Gaps = 19/259 (7%) Query: 85 GSLAVNSRISFESYFDQIIR---KSGDFDYRKITTKHIRSGVESRKH---TPSSAIQFLT 138 L+ ++ S+ II +G D+RK+ +RS V K S L+ Sbjct: 31 RQLSPLTQTSYLRQLSAIITILSAAGVVDWRKLDAAGVRSVVSRSKRDGLHSGSLALRLS 90 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE---GSQPRLA 195 ++R W V + + NP + P+ + ++M + + + R Sbjct: 91 ALRSFLDWMVSRGVLTANPAKGISTPRAGRPLPKNMDVDEMDRLLDIDLDDPLAVRDRTM 150 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI--------ITVELPDGFMKLLAM 247 E + +GLR ++ QH+ + G+ V + ++ L + Sbjct: 151 LEVMYGAGLRLAELVGMDCQHIDLASGEVWVMGKGSKERKLPIGKTAVTWLERWLALREL 210 Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAH 305 + FI+N ++++ F K GVN H +R AT ++ Sbjct: 211 FGPQDDAVFISNQGRRISMRNVQKRFAEWGIKQGVNSHVHPHKLRHSFATHMLESSGDLR 270 Query: 306 ELMATYGWKTVDQAETYTK 324 + G + + YT Sbjct: 271 AVQELLGHANLSTTQIYTH 289 >gi|87199919|ref|YP_497176.1| phage integrase [Novosphingobium aromaticivorans DSM 12444] gi|87135600|gb|ABD26342.1| phage integrase [Novosphingobium aromaticivorans DSM 12444] Length = 293 Score = 115 bits (289), Expect = 8e-24, Method: Composition-based stats. Identities = 45/263 (17%), Positives = 84/263 (31%), Gaps = 18/263 (6%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLF 144 A N+ ++ G R + SS + +++R + Sbjct: 20 RGAAANTLAAYRRDLAGAAEVIGPLATAG-REDLARLAIAWSDLAASSLARKSSALRQFY 78 Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF--------KSFWSEGSQPRLAF 196 + V + +P ++ RPK + R ++ +S E ++ Sbjct: 79 GFLVDEGMREEDPSSALPRPKTRRPLPRLLDHGQVEALFRTAEEDARSGTPEAARMLALL 138 Query: 197 EFLLYSGLRCSDSCRAGVQHL-QNNIFSIKTQKTGTIITVEL----PDGFMKLLAMTPIG 251 E L SGLR ++ + + ++ T K G V + L G Sbjct: 139 ELLYGSGLRATELVSLPLAAIPRDAPLLTITGKGGVQRMVPVSARATRALADWLVARGKG 198 Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHELM 308 F + ++ + + A +AG++ S H +R AT + GA L Sbjct: 199 GRFVFPSPRGGHLSRVRLFQLLRDLALRAGLDPEKVSPHVLRHAFATHLLEGGADLRVLQ 258 Query: 309 ATYGWKTVDQAETYTKGADRIRL 331 G + + YT D RL Sbjct: 259 TLLGHADIATTQIYTH-VDAARL 280 >gi|325853546|ref|ZP_08171378.1| phage integrase, N-terminal SAM domain protein [Prevotella denticola CRIS 18C-A] gi|325484350|gb|EGC87278.1| phage integrase, N-terminal SAM domain protein [Prevotella denticola CRIS 18C-A] Length = 294 Score = 115 bits (289), Expect = 8e-24, Method: Composition-based stats. Identities = 44/263 (16%), Positives = 101/263 (38%), Gaps = 23/263 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYR----KITTKHIRSGVESRKHTPSSA---IQFL 137 + + + IS+ + R + D + + T +R +E ++A + + Sbjct: 15 RNYSPMTVISYRKDLEAFERFCQELDPQITWESVDTDVVRDWMEDMMDKGNAASSVNRRI 74 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK--SFWSEGSQPRLA 195 +++R +++A+R V+ +P ++ P+R+ + + +M+Q + W++G + LA Sbjct: 75 SALRSFYRFALRCGLVSKDPVHGLQGPRRQKPLPQFLKESEMEQLLDPAMWTDGYEDVLA 134 Query: 196 FEFL---LYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLAM---- 247 + +G+R S+ + + + +K T K + + LA Sbjct: 135 RTLIVTFYETGIRLSELTGLDDRDVDDVTCELKVTGKRNKQRIIPFGKELEETLAAYRCV 194 Query: 248 ----TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAG 301 T T F +++ Q K +K ++ H +R AT + Sbjct: 195 RDARTGDSSPTLFRTEKGERITNAQVRALVKKNLSKVSTLKKRTPHVLRHTFATAMLNHE 254 Query: 302 ATAHELMATYGWKTVDQAETYTK 324 A + G +++ E YT Sbjct: 255 AGLESVKKLLGHESLSTTEIYTH 277 >gi|301166099|emb|CBW25674.1| putative integrase [Bacteriovorax marinus SJ] Length = 399 Score = 115 bits (289), Expect = 8e-24, Method: Composition-based stats. Identities = 54/343 (15%), Positives = 109/343 (31%), Gaps = 36/343 (10%) Query: 20 KIIYYFRKGHGRRIRLPYPHESTFIPAY-----MSALTGSTPKREYINSPRKKPTTLKWL 74 K R GRRI +F Y + L + K K Sbjct: 60 KYRIDVRMPDGRRI------TKSFSRKYDADKFKAELLLEKTGIQDTGIYIKNDVKFKDF 113 Query: 75 ISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIR---SGVESRKHTP 130 ++ + ++ G A ++ ++ S + I+ G+ + I +H R + + + Sbjct: 114 VATWFETQVKGRKAKKTQQAYVSDLRNHILPILGEIQLKHIRYQHARLLENSIIETGKSA 173 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 + + + + + AV+ EY+ +P + + + W+KE+++ F F Sbjct: 174 RTVNKVMMEFKTILNDAVKLEYLLKSPVRGYPELQEEPRHLTFWSKEEIRVFIDFNKANP 233 Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-------------NNIFSIKTQKTGTIITVEL 237 L + L +GLR + C + + T KT V + Sbjct: 234 LLDL-YIVALNTGLRLGEICGLCWDRVDFTTNNLVINRSLTRDGIR-NTTKTHRGRYVPM 291 Query: 238 PDGFMKLLAMTPIGKET--FFINNDKQKMNATQFSIW-FKAKATKAGVN--KSAHGVRKF 292 +L + + F + + + FK +AG+ H +R Sbjct: 292 NTIVRDILQKRLRTRISKFVFSTQTGKPLPYDHVTQRHFKKSQREAGLENIIRFHDLRHT 351 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIK 334 A+ G + L G + Y D +R + Sbjct: 352 FASHFMMNGGNIYTLQKLLGHTDIKTTMIYAHLDQDFLREAAE 394 >gi|300781243|ref|ZP_07091097.1| tyrosine recombinase XerD [Corynebacterium genitalium ATCC 33030] gi|300532950|gb|EFK54011.1| tyrosine recombinase XerD [Corynebacterium genitalium ATCC 33030] Length = 298 Score = 115 bits (289), Expect = 8e-24, Method: Composition-based stats. Identities = 49/264 (18%), Positives = 88/264 (33%), Gaps = 24/264 (9%) Query: 85 GSLAVNSRISFESYFDQ---IIRKSGDFDYRKITTKH---IRSGVESRKHTPSSAIQFLT 138 L+ N+ ++ D+ + +G D +T + + SSA + L Sbjct: 18 RGLSANTLSNYRRDVDRYVTWLESAGKTDLNSVTASDLGDYVADLRRGGLAASSAGRALV 77 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRL 194 R L K+A + VA + V PK + + E++ + + + Sbjct: 78 VARGLHKFATVEGAVAADVAAGVSPPKTGEKLPDTLSIEEVGLLLDACPTDTPADLRDKA 137 Query: 195 AFEFLLYSGLRCSDSCRAGVQHL---QNNIFSIKTQKTGTIITVELPDGFMKLLAM---- 247 E L +G R S+ V + ++ F T K V + + Sbjct: 138 LLEVLYATGARVSEVLGLVVDDVVGLEDGTFIKVTGKGNKQRIVPVGSAARDAVEAYLVR 197 Query: 248 -----TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300 + F+N ++ K A +AGV+K S H +R AT + Sbjct: 198 GRPALSKGKTHALFLNKRGGALSRQSAWTVIKEAAGRAGVDKHISPHTLRHSFATHLLEG 257 Query: 301 GATAHELMATYGWKTVDQAETYTK 324 GA + G +V + YT Sbjct: 258 GADVRTVQELLGHASVTTTQIYTH 281 >gi|213964731|ref|ZP_03392931.1| tyrosine recombinase XerC [Corynebacterium amycolatum SK46] gi|213952924|gb|EEB64306.1| tyrosine recombinase XerC [Corynebacterium amycolatum SK46] Length = 304 Score = 115 bits (289), Expect = 8e-24, Method: Composition-based stats. Identities = 44/280 (15%), Positives = 96/280 (34%), Gaps = 26/280 (9%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF-DYRKITTKHIRSGVESRKH 128 ++ ++ ++ + L+ + ++ + ++ + + + Sbjct: 21 IEAILMDFLDELTYSRRLSGATVRAYRADLMPLLAGLDHISELSTPVIRAHLGAKHAEGA 80 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS- 187 SS + TS+R W V ++ + +P L + PK+ + E +++ S Sbjct: 81 ARSSLARLTTSIRQFCSWLVARQILDADPSLRLSTPKKHQHLPEVLSPEKVEEAIEKVSS 140 Query: 188 ----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGF 241 ++ E L +G+R + C+A V + +I S+ K V Sbjct: 141 EDSAVAARDLAIVELLYATGMRVEELCKADVSDVNFSRHIISV-VGKGDKQRIVPFGAPA 199 Query: 242 MKLLA----------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRK 291 L + + F+ ++N Q A + S H +R Sbjct: 200 EAALKGWLQVRGNFPASAQAEHALFLGVRGGRLNPRQARRVIHKWA-----DVSPHALRH 254 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIR 330 +AT + GA + G ++ + YT ADR+R Sbjct: 255 SAATAMVEGGADLRVVQEMLGHSSLATTQIYTHVSADRLR 294 >gi|296532542|ref|ZP_06895255.1| integrase/recombinase XerD [Roseomonas cervicalis ATCC 49957] gi|296267143|gb|EFH13055.1| integrase/recombinase XerD [Roseomonas cervicalis ATCC 49957] Length = 294 Score = 115 bits (289), Expect = 8e-24, Method: Composition-based stats. Identities = 44/277 (15%), Positives = 99/277 (35%), Gaps = 19/277 (6%) Query: 85 GSLAVNSRISFESYFDQI----IRKSGDFDYRKITT-KHIRSGVESRKHTPSSAIQFLTS 139 A N+ ++ + + + R+ G + +G+ +P +A + L++ Sbjct: 16 RGAARNTLAAYRADLEDVAGFARRQGGTLAGADTELLRRYLAGLTDAGLSPRTAARRLSA 75 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-----SEGSQPRL 194 +R +++ + A +P ++ P++ + + +E+++ G Sbjct: 76 LRQFYRFLAAEGVRADDPTEILDSPRQPSRVPKALRREEVEALLDAATRLPGKRGPLATA 135 Query: 195 AFEFLLYSGLRCSDSCRAGVQHL-QNNIFSIKTQKTGTIITVELPDG--FMKLLAMTPIG 251 E L SGLR S+ + L Q++ + K V + + L P Sbjct: 136 LLELLYCSGLRASELVSLPARALAQDSPLVLVRGKGNKERLVPISERARLAALSLQDPKK 195 Query: 252 KETFFINNDK--QKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHE 306 + + + + K A AG++ S H +R AT + GA Sbjct: 196 PSKWLFPSRGAAGHLTRQSLLLLVKQAALAAGLDPAKLSPHVLRHSFATHLLEGGADLRA 255 Query: 307 LMATYGWKTVDQAETYTKG-ADRIRLGIKNSRRISSV 342 L G + + YT+ +R+R ++ ++ Sbjct: 256 LQMLLGHADIATTQIYTRVLEERLRQIVETHHPLAEA 292 >gi|229122156|ref|ZP_04251371.1| DNA integration/recombination/invertion protein [Bacillus cereus 95/8201] gi|228661282|gb|EEL16907.1| DNA integration/recombination/invertion protein [Bacillus cereus 95/8201] Length = 369 Score = 115 bits (289), Expect = 8e-24, Method: Composition-based stats. Identities = 47/312 (15%), Positives = 106/312 (33%), Gaps = 38/312 (12%) Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVE 124 TL+ ++ + + S+ ++ + + ++ + +I G K+ HI+ + Sbjct: 60 PSKVTLEDYLNHWLEIKS-MSIERSTFVGYRAFINQHVIPSIGMVALHKLNVMHIQKCYK 118 Query: 125 SRKHTPSSAIQFLTSMRVL---FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 + + L R+L AV+Q ++ NP E PK++ I+ WT+E++++ Sbjct: 119 TAIDRGIANNSVLLMHRILKSALNLAVKQNIISRNPADFAEIPKKERTSIQTWTEEEVKK 178 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--------------NNIFSIKTQ 227 F S+ S+ + + + +G+R + Q + +N + Sbjct: 179 FL-LHSQESRYHIGYLLAITTGMRMGEVLGLRWQDVDFEKHTVTINQTSGHDNKIKKTAK 237 Query: 228 KTGTIITVELPDGFMKLLAMTPI--------------GKETFFINNDKQKMNATQFSIWF 273 + T+ +P ++ L + + N + F F Sbjct: 238 TNSSKRTIPVPKETIESLKKHKVLINQEKLRLGSAYQDFDLINCNEFGMIIKKANFRKNF 297 Query: 274 KAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRL 331 AGV + H +R ATI G + G + Y+ + Sbjct: 298 IRAIHNAGVKEIKFHDLRHTHATILLKQGVNPKIISERLGHTDISMTLSVYSHVL--PNM 355 Query: 332 GIKNSRRISSVV 343 + + + Sbjct: 356 QEEAVKNFGKSI 367 >gi|66044739|ref|YP_234580.1| Phage integrase:Phage integrase, N-terminal SAM-like [Pseudomonas syringae pv. syringae B728a] gi|63255446|gb|AAY36542.1| Phage integrase:Phage integrase, N-terminal SAM-like [Pseudomonas syringae pv. syringae B728a] Length = 320 Score = 115 bits (289), Expect = 8e-24, Method: Composition-based stats. Identities = 53/277 (19%), Positives = 101/277 (36%), Gaps = 32/277 (11%) Query: 84 WGSLA-VNSRISFESYFDQIIRKSGDF---DYRKITTKHI---RSGVESRKHTPSSAIQF 136 + +L +R ++++ + G ++R +T H+ R+ +E R ++ + Sbjct: 33 FANLDNPRTRRAYQNDLEDFCGFVGLVSADEFRVVTRSHVLAWRAQLEHRGLAGATIRRK 92 Query: 137 LTSMRVLFKWAVRQE-YVAINPCLSVERPKRKT-EGIRPWTKED-----MQQFKSFWSEG 189 L ++ LF + NP V+RPK ++ EG P + + +G Sbjct: 93 LAALASLFDHLLESNAIAGGNPVHGVKRPKIESNEGKTPALGDHQAKALLDAPDETTLKG 152 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKT-QKTGTIITVELPD------- 239 + R LLY GLR ++ V + + I +K K G + + L Sbjct: 153 QRDRAILAVLLYHGLRREEAALLQVSDIQERRGIQHLKVHGKGGKVRYLPLHPVAAGRIH 212 Query: 240 -GFMKLLAMTPIGKETFFINNDKQ----KMNATQFSIWFKAKATKAGV---NKSAHGVRK 291 K F+ + + A A A KAG+ HG+R Sbjct: 213 LFLESSGHHLADRKVPLFMPLRGKLTGAGITANGIYTVVAAYAKKAGIEVDGLGVHGLRA 272 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 +AT + + A ++ A G + + Y + +R Sbjct: 273 TAATNALEHEADIAKVQAWLGHANISTTKIYDRRENR 309 >gi|150017415|ref|YP_001309669.1| site-specific tyrosine recombinase XerC [Clostridium beijerinckii NCIMB 8052] gi|149903880|gb|ABR34713.1| phage integrase family protein [Clostridium beijerinckii NCIMB 8052] Length = 329 Score = 115 bits (289), Expect = 8e-24, Method: Composition-based stats. Identities = 51/248 (20%), Positives = 91/248 (36%), Gaps = 24/248 (9%) Query: 103 IRKSGDFDYRKITTKHIRSGV---ESRKHTPSSAI-QFLTSMRVLFKWAV-RQEYVAINP 157 I D R I + + + + E + S A + + +++ FK+ + + + NP Sbjct: 68 ISVIDDEFLRGIKLRDLYAFLSFTEKYRDNSSYARARKVATLKSFFKFLFGKAKVITENP 127 Query: 158 CLSVERPKRKTEGIRPWTKED----MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAG 213 L +E PK T ++ S+ F L G+R S+ C Sbjct: 128 ALELESPKINKRHPVYLTLNQSIHLLESLNKNDKNYSRDYCILMFFLNCGMRLSELCSIQ 187 Query: 214 VQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA----------MTPIGKETFFINNDKQK 263 + ++++ +I K TV L D +K LA P K+ F+++ Sbjct: 188 IDKIRDDTLTII-GKGNKERTVYLNDACLKALANYLNVRDDSKALPDNKKFLFLSSRNGP 246 Query: 264 MNATQFSIWFKAKATKAGV---NKSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQA 319 +N I K T AG+ + H +R +AT+ G L + G + Sbjct: 247 INKRTVEIMIKKHITNAGLTDDKYTPHKLRHTAATLMYKYGNVDIRSLQSILGHTNISTT 306 Query: 320 ETYTKGAD 327 + YT D Sbjct: 307 QIYTHVDD 314 >gi|315084829|gb|EFT56805.1| phage integrase, SAM-like domain protein [Propionibacterium acnes HL027PA2] Length = 331 Score = 115 bits (289), Expect = 8e-24, Method: Composition-based stats. Identities = 41/293 (13%), Positives = 89/293 (30%), Gaps = 54/293 (18%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDF------DYRKITTKHIRSGVESRKHTPSSAIQFLT 138 L+ N+ ++ + G + ++ + R ++ P+S + + Sbjct: 20 RGLSDNTVQAYRRDLLRYQEYLGSRGIGSLAEVTRVDVEEFRRHLDHIGLAPASVTRCVV 79 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRL 194 ++R L ++AV + + + R + + + ++ + EG + Sbjct: 80 AVRNLHRFAVGSGQLQADVTAGMSPGTRSRRLPKALSMDQVESLLAAPDTSTVEGLRDAA 139 Query: 195 AFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKT-QKTGTIITVELPDGFMKLLAMTP 249 E L +G R S+ C V + + ++ K V L K + Sbjct: 140 LLELLYGTGARVSEVCALDVDDIRPVLDDPDLGLRLIGKGDKERIVPLGSYAAKAVDAWL 199 Query: 250 I------------------------------------GKETFFINNDKQKMNATQFSIWF 273 I G+ +N ++++ Sbjct: 200 IRGRPAWAEIGNGEHALLLNTRGRRLSRQSAWAEIGNGEHALLLNTRGRRLSRQSAWAVI 259 Query: 274 KAKATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 + AG++ S H +R AT D GA + G +V + YT Sbjct: 260 RRAGEAAGLDVEHLSPHSLRHSYATHLLDGGADVRVVQELLGHSSVTTTQIYT 312 >gi|312794335|ref|YP_004027258.1| integrase family protein [Caldicellulosiruptor kristjanssonii 177R1B] gi|312181475|gb|ADQ41645.1| integrase family protein [Caldicellulosiruptor kristjanssonii 177R1B] Length = 374 Score = 115 bits (289), Expect = 8e-24, Method: Composition-based stats. Identities = 49/330 (14%), Positives = 105/330 (31%), Gaps = 39/330 (11%) Query: 39 HESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESY 98 AL G + + T L+ + + +++++ S+ S Sbjct: 31 GGFDTKAEAEEALPGILNIIYQNKNKLLERKTFGELLDLWLNTVAKNRVSLSTFQSYSSS 90 Query: 99 FD-QIIRKSGDFDYRKITTKHIRSG----VESRKHTPSSAIQFLTSMRVLFKWAVRQEYV 153 I GD++ K+T ++ + + + + A+ + +AV+ + + Sbjct: 91 IALHIKPFLGDYELSKLTPMDLQKYYQHIMTEKGLSSTLALYHHRIIHQALDYAVKMDML 150 Query: 154 AINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAG 213 NP V+ PK++ W +E +++ + E + R+ +Y+G+R + Sbjct: 151 EKNPADYVDPPKKRNYQPSIWDEETIKKTLEIFKE-TNIRIPVLLAVYTGMRIGEITALK 209 Query: 214 VQHLQNNIFSIKTQKT-----------------GTIITVELPDGFMKLLAMTPIG----- 251 + I KT + V + + ++ L Sbjct: 210 WDDVNLEQGYITVSKTLMKINGQTYIKEKAENKNSYRIVAISNQVVEELKEWKAKQEKLK 269 Query: 252 --------KETFFIN-NDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAG 301 E F D + + + F+ K G+ K H +R A++ G Sbjct: 270 KELKELYHDEGFVCTFEDGRVQDPKYITKVFQKTIEKHGLPKIRFHDLRHTHASLLLKHG 329 Query: 302 ATAHELMATYGWKTVDQA-ETYTKGADRIR 330 + G TV Y+ D R Sbjct: 330 VDPKHISDRLGHSTVTTTLNIYSHVFDEKR 359 >gi|269137482|ref|YP_003294182.1| site-specific recombinase XerC [Edwardsiella tarda EIB202] gi|267983142|gb|ACY82971.1| site-specific recombinase XerC [Edwardsiella tarda EIB202] gi|304557555|gb|ADM40219.1| Tyrosine recombinase XerC [Edwardsiella tarda FL6-60] Length = 303 Score = 115 bits (289), Expect = 8e-24, Method: Composition-based stats. Identities = 39/259 (15%), Positives = 85/259 (32%), Gaps = 19/259 (7%) Query: 85 GSLAVNSRISFES---YFDQIIRKSGDFDYRKITTKHIRSGVESRKHT---PSSAIQFLT 138 L+ + ++ ++ + G D+ + T +RS V + P+S L+ Sbjct: 23 RQLSPRTVETYRRQLAASAALLLEGGLCDWAALDTTRVRSLVARSRRQGLEPASLALRLS 82 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS---QPRLA 195 ++R W V + + NP V P++ + +D+ + + + R Sbjct: 83 ALRSFLDWQVSRGALTANPAKGVAAPRQGRHLPKNLDVDDVNRLLDIDEGDTLAVRDRAM 142 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMKLLAM------- 247 E + GLR S+ +H+ K + + ++ L Sbjct: 143 LEVMYGGGLRLSELVGLDCRHVDLTTGEVWVLGKGSKERRLPVGREAVRWLQTWLSLRLS 202 Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAH 305 + F++ +++ F K GV + H +R AT ++ Sbjct: 203 LQPQDDALFVSRLGGRISPRSVQKRFAEWGVKQGVTSHIHPHKLRHSFATHMLESSGDLR 262 Query: 306 ELMATYGWKTVDQAETYTK 324 + G + + YT Sbjct: 263 AVQELLGHANLSTTQIYTH 281 >gi|257898819|ref|ZP_05678472.1| phage integrase [Enterococcus faecium Com15] gi|257836731|gb|EEV61805.1| phage integrase [Enterococcus faecium Com15] Length = 301 Score = 115 bits (289), Expect = 8e-24, Method: Composition-based stats. Identities = 47/281 (16%), Positives = 99/281 (35%), Gaps = 34/281 (12%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFE---SYFDQIIRKSGDFDYRKITTKHIRSGVESRK 127 L++LI E + ++ ++E +F + +SGD D K +R + + Sbjct: 11 LRYLIVE-------RGYSEKTKEAYEEDILHFKHFLEESGDADLLKAEYFTVRVYLSALA 63 Query: 128 H-----TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 + +S + + S+R +++ +++E + NP V K+ R + +++MQ Sbjct: 64 DHRPSYSRNSISRKIASLRSFYQYLLKEEVIKENPFSYVHLKKKNLRLPRFFYEDEMQAL 123 Query: 183 KSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVEL 237 + R E L SG+R S+ V + ++ + K L Sbjct: 124 FDSVAGDSPLDLRNRALLEVLYGSGIRLSECSNLLVSDIDFDSEVMLIHGKGNKERYAPL 183 Query: 238 ------------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS 285 +G L+ + F+N+ + + T K+ ++ Sbjct: 184 GSFAQDALQEYFTEGRQVLMTKYHEEHDIVFVNHHGKPITPTGIEYVLNQMIKKSSLDSD 243 Query: 286 --AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R AT + GA + G + + Y Sbjct: 244 IHPHMLRHTFATHLLNNGADLRTVQELLGHANLSTTQIYAH 284 >gi|258541884|ref|YP_003187317.1| phage DNA recombinase XerD [Acetobacter pasteurianus IFO 3283-01] gi|256632962|dbj|BAH98937.1| phage DNA recombinase XerD [Acetobacter pasteurianus IFO 3283-01] gi|256636019|dbj|BAI01988.1| phage DNA recombinase XerD [Acetobacter pasteurianus IFO 3283-03] gi|256639074|dbj|BAI05036.1| phage DNA recombinase XerD [Acetobacter pasteurianus IFO 3283-07] gi|256642128|dbj|BAI08083.1| phage DNA recombinase XerD [Acetobacter pasteurianus IFO 3283-22] gi|256645183|dbj|BAI11131.1| phage DNA recombinase XerD [Acetobacter pasteurianus IFO 3283-26] gi|256648238|dbj|BAI14179.1| phage DNA recombinase XerD [Acetobacter pasteurianus IFO 3283-32] gi|256651291|dbj|BAI17225.1| phage DNA recombinase XerD [Acetobacter pasteurianus IFO 3283-01-42C] gi|256654282|dbj|BAI20209.1| phage DNA recombinase XerD [Acetobacter pasteurianus IFO 3283-12] Length = 306 Score = 115 bits (289), Expect = 8e-24, Method: Composition-based stats. Identities = 47/284 (16%), Positives = 99/284 (34%), Gaps = 27/284 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESR---KHTPSSAIQFLTS 139 + A N+ ++E+ + TT+ +++ + + + + L+ Sbjct: 17 RAAAPNTLAAYEADLTSCAESLAREGQTLQTATTEGLQNWMAALVGSGQARRTVARRLSC 76 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----------- 188 +R + + +R+ A NP ++ PK T R ++ ++ + +E Sbjct: 77 IRQFYLFLLREGMRADNPAAHLDSPKPHTPLPRFLSESEVLALLNACAEPAGASLAKKRR 136 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHL-QNNIFSIKTQKTGTIITVELPDGFMKLLAM 247 G + A E L SGLR S+ + + + + K G V L D + Sbjct: 137 GILAKAALELLYASGLRISELLALPRKAIAGDQRMIMVRGKGGRERLVPLSDSAREAAQA 196 Query: 248 TPIGKETF---FINNDK---QKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISA 298 F+ + + M F A +A ++ S H +R AT Sbjct: 197 LLEVDAHLESPFLFPGRDPAKPMTRQAFDRILHTVAIRAEIDPARLSPHVLRHSFATHLL 256 Query: 299 DAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKNSRRISS 341 GA L G + + YT +R++ ++ +++ Sbjct: 257 AHGADLRALQMLLGHADIATTQIYTHVQTERLQKAVQAHHPLAA 300 >gi|254479225|ref|ZP_05092570.1| site-specific recombinase, phage integrase family [Carboxydibrachium pacificum DSM 12653] gi|214034826|gb|EEB75555.1| site-specific recombinase, phage integrase family [Carboxydibrachium pacificum DSM 12653] Length = 348 Score = 115 bits (289), Expect = 8e-24, Method: Composition-based stats. Identities = 53/293 (18%), Positives = 99/293 (33%), Gaps = 29/293 (9%) Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESY-FDQIIRKSGDFDYRKITTKHIRSGV- 123 + P T+K Y + L + FD+I D D I + + Sbjct: 54 RSPNTIKAY--AYDLILFFRFLKKRRGKVSDDIPFDEI--DISDVDIDLIESVDLNDLYA 109 Query: 124 ------ESRKHTPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTK 176 R +TP + + + S+R + + R+ + ++ NP +E PK T Sbjct: 110 YLSFVTNERSNTPPARARKVASLRSFYNYLYRKAKVISKNPTQELESPKLSVRHPIYLTL 169 Query: 177 EDMQQFKSFWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT 234 E+ ++ + + R L GLR S+ + ++ + ++ K T Sbjct: 170 EESKKLLNSIDGPFKERDYAIITLFLNCGLRVSELVNINLDDIKEDKLTVI-GKGNKQRT 228 Query: 235 VELP--------DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA---GVN 283 + L D K+ F++ ++++ K A G Sbjct: 229 IYLNEACIKAISDYLKVRPKEGVKDKKALFLSKRLKRISVKTVQYLVKKHLKHANLEGKK 288 Query: 284 KSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGAD-RIRLGIK 334 SAH +R +AT+ G L G V + YT D ++R + Sbjct: 289 YSAHKLRHTAATLMYRYGNVDIRTLQKLLGHSNVSTTQIYTHVDDSQLREAVN 341 >gi|152976197|ref|YP_001375714.1| site-specific tyrosine recombinase XerC [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152024949|gb|ABS22719.1| tyrosine recombinase XerC [Bacillus cytotoxicus NVH 391-98] Length = 299 Score = 115 bits (289), Expect = 8e-24, Method: Composition-based stats. Identities = 39/272 (14%), Positives = 94/272 (34%), Gaps = 26/272 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKSGD------FDYRKITTKHIRSGVESRKHTPSSAIQFLT 138 + + + S+++ + ++ D + + + + K S + ++ Sbjct: 18 RNYSKYTIASYQNDLEHFVQFMEREGISSFLDVTYVDVRLYLTTLHDEKLARKSVARKVS 77 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRL 194 S+R L+++ +R+ Y NP PK++ + E++++ G + + Sbjct: 78 SLRSLYRFLMREGYREDNPFALASLPKKEWSIPKFLYAEELEKLFEVSDTKTPLGQRNQA 137 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE------------LPDGF 241 E + +G+R S+ + + ++ +I K + + +G Sbjct: 138 LLELMYATGIRVSECVTLKLTDIDFSVGTILVMGKGKKQRYIPFGSYAQDALITYIENGR 197 Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299 +L T + F+N + K + S H +R AT D Sbjct: 198 KQLAKKTEEYSQMVFLNAKGVPLTDRGVRYILNELIKKTSLTMRISPHMLRHTFATHMLD 257 Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRL 331 G+ + G + + + YT + RL Sbjct: 258 EGSDLRAVQELLGHENLSTTQIYTH-VSKERL 288 >gi|78777830|ref|YP_394145.1| Phage integrase [Sulfurimonas denitrificans DSM 1251] gi|78498370|gb|ABB44910.1| Phage integrase [Sulfurimonas denitrificans DSM 1251] Length = 368 Score = 115 bits (289), Expect = 8e-24, Method: Composition-based stats. Identities = 58/312 (18%), Positives = 103/312 (33%), Gaps = 30/312 (9%) Query: 45 PAYMSALTGS----TPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD 100 AY + T + S R K T + Y W + + IS E Y+ Sbjct: 54 DAYDRLIQAKHHLMTGEESPFKSQRAKKFTFEDAWLAYY---EWAKVNKKTYISDEQYYR 110 Query: 101 -QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA---IQFLTSMRVLFKWAVRQEYVA-- 154 I + D + I +K I + +A ++ MR + +A++ + + Sbjct: 111 LHIAPTFANKDIKSIKSKDIEQFKQLYTSKGYAAQSVKHYIGLMRHIINYAIKNDLIKNY 170 Query: 155 INPCLS--VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL--AFEFLLYSGLRCSDSC 210 NP V+ P +KE + + P+L LLY+G R S+ Sbjct: 171 ANPISGGKVKLPTIDNARQAFLSKEQARVILDELLQYENPQLYQLTILLLYTGARFSEVA 230 Query: 211 RAGVQHL--QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKE--TFFINNDKQKMNA 266 ++ + N+ K K G V + + +++ K N ++M Sbjct: 231 SLTWNNINFETNMIYFKATKNGNARWVFMNELVKEVIEQLKADKNNNLIIANTKGKQM-E 289 Query: 267 TQFSIWF--------KAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318 W + K A + H +R A+ A AG + G KT++ Sbjct: 290 RMLHSWQIVVDNIIDENKEADAKQRVTVHSLRHTHASWLAMAGLDILHIKEQLGHKTLEM 349 Query: 319 AETYTKGADRIR 330 Y+ R Sbjct: 350 TMRYSHLIPNKR 361 >gi|317477767|ref|ZP_07936960.1| tyrosine recombinase XerC [Bacteroides sp. 4_1_36] gi|316906112|gb|EFV27873.1| tyrosine recombinase XerC [Bacteroides sp. 4_1_36] Length = 294 Score = 115 bits (289), Expect = 9e-24, Method: Composition-based stats. Identities = 41/263 (15%), Positives = 96/263 (36%), Gaps = 23/263 (8%) Query: 85 GSLAVNSRISFESYFDQI----IRKSGDFDYRKITTKHIRSGVES---RKHTPSSAIQFL 137 + + + + + ++ GD + + +R + S + ++ + L Sbjct: 15 RNYSKGTVEYYRADILELQRFGEEMLGDLTPLDVDAELVREWIASLMGKGLASNTINRKL 74 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS-----EGSQP 192 +S+R +K+ +R+ VA++P V PK+K + +M + EG + Sbjct: 75 SSVRTYYKFLLRRGKVAVDPLRKVTGPKKKKPLPVFLREGEMNRLLDDMDFGEGFEGCRD 134 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLA----- 246 + E +G+R S+ + + + +K T K + + + + Sbjct: 135 HMIIEMFYATGMRLSELIGLDDKDVDFSASLVKVTGKRNKQRLIPFDEELGRSMREYVNV 194 Query: 247 ---MTPIGKETFFINNDKQKMNATQFSIWFKA--KATKAGVNKSAHGVRKFSATISADAG 301 P+ + FF+ + +++ + K +S H +R AT + G Sbjct: 195 RNEAVPVRSDAFFVRKNGKRLYRGIVACLVKRNLSKVVTVKKRSPHVLRHTFATAMLNNG 254 Query: 302 ATAHELMATYGWKTVDQAETYTK 324 A + G +++ E YT Sbjct: 255 ADLGSIKELLGHESLATTEVYTH 277 >gi|224368897|ref|YP_002603059.1| hypothetical protein HRM2_17930 [Desulfobacterium autotrophicum HRM2] gi|223691614|gb|ACN14897.1| hypothetical protein HRM2_17930 [Desulfobacterium autotrophicum HRM2] Length = 365 Score = 115 bits (289), Expect = 9e-24, Method: Composition-based stats. Identities = 55/277 (19%), Positives = 100/277 (36%), Gaps = 25/277 (9%) Query: 71 LKWLISEYRKSAHWGSLAVNS-RISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129 + + S+Y W SL S + I KIT H++ + Sbjct: 80 IDGVWSKYLT---WASLNKRSWIDDRIRWELHISAHLKGMKMDKITPSHVQDILNHMATK 136 Query: 130 ---------PSSAIQFLTSMRVLFKWAVRQE-YVAINPCLSVERPKRKTEGIRPWTKEDM 179 P++ Q L ++ +F W+++Q Y NPC SVE P P K + Sbjct: 137 DTPKGGHYAPATIKQVLVLIKRVFNWSMQQGLYQGGNPCKSVEAPMFDNRINNPLDKSGL 196 Query: 180 QQFKSFWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQ--KTGTII 233 + S + R L +F LYSG R + +N++ +++ K+ Sbjct: 197 RSLMSVLDTWNNERAILVIKFALYSGKRKGEVLSLTWDSVDFENHLLTLQAMNTKSKKAQ 256 Query: 234 TVELPDGFMKLL--AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRK 291 ++ L + M +L + F + F +K +AG++ H +R Sbjct: 257 SLPLNNHCMTILERCRKLKVSDYVFPSTLGN--YYNTFDETWKRIRKRAGISIRFHDLRH 314 Query: 292 FSATISADAGA-TAHELMATYGWKTVDQAETYTKGAD 327 A+ A +G + L G T++ + Y + Sbjct: 315 TYASYLASSGKVDIYTLKELLGHSTIEMTQRYAHLVN 351 >gi|53715486|ref|YP_101478.1| tyrosine type site-specific recombinase [Bacteroides fragilis YCH46] gi|60683459|ref|YP_213603.1| putative site-specific recombinase [Bacteroides fragilis NCTC 9343] gi|265767527|ref|ZP_06095193.1| tyrosine recombinase XerC [Bacteroides sp. 2_1_16] gi|52218351|dbj|BAD50944.1| tyrosine type site-specific recombinase [Bacteroides fragilis YCH46] gi|60494893|emb|CAH09700.1| putative site-specific recombinase [Bacteroides fragilis NCTC 9343] gi|263252832|gb|EEZ24344.1| tyrosine recombinase XerC [Bacteroides sp. 2_1_16] gi|301164943|emb|CBW24504.1| putative site-specific recombinase [Bacteroides fragilis 638R] Length = 293 Score = 115 bits (289), Expect = 9e-24, Method: Composition-based stats. Identities = 44/275 (16%), Positives = 99/275 (36%), Gaps = 24/275 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIR----KSGDFDYRKITTKHIRSGV---ES 125 L + + + + + +++ Q+ + FD ++ + +R + Sbjct: 2 LTDSFLDYLRYERNYSEKTVLAYGEDISQLREFAQERMEKFDPAEVKPELVREWIVSLMD 61 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + +T +S + L+S+R +K+ +RQ V+++P + PK K + +M + Sbjct: 62 QGYTSTSVNRKLSSLRSFYKYLLRQGEVSVDPLRKITGPKNKKPLPSFLKESEMNKLLDD 121 Query: 186 WS-----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPD 239 +G + RL E +G+R S+ + + + +K T K + D Sbjct: 122 TDFGEGFKGCRDRLIIEMFYATGMRLSELIGLDDKDVDFSASLLKVTGKRNKQRLIPFGD 181 Query: 240 GFMKLL--------AMTPIGKETFFINNDKQKMNATQFSIWFKA--KATKAGVNKSAHGV 289 + + M + FF+ + +++ K +S H + Sbjct: 182 ELKETMLEYVDIRNEMISGRSDAFFVRENGERLYKNLVYNLVKRNLSKVVTLKKRSPHVL 241 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 R AT + A + G ++ E YT Sbjct: 242 RHTFATTMLNNDAELGAVKELLGHSSLATTEIYTH 276 >gi|37524549|ref|NP_927893.1| site-specific tyrosine recombinase XerC [Photorhabdus luminescens subsp. laumondii TTO1] gi|37525103|ref|NP_928447.1| site-specific tyrosine recombinase XerC [Photorhabdus luminescens subsp. laumondii TTO1] gi|37525111|ref|NP_928455.1| site-specific tyrosine recombinase XerC [Photorhabdus luminescens subsp. laumondii TTO1] gi|36783973|emb|CAE12838.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] gi|36784529|emb|CAE13429.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] gi|36784537|emb|CAE13437.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 376 Score = 115 bits (288), Expect = 9e-24, Method: Composition-based stats. Identities = 54/305 (17%), Positives = 108/305 (35%), Gaps = 32/305 (10%) Query: 64 PRKKPTTLKWLI---SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITT---K 117 P P +L L+ +R+ +W + + +F G + IT + Sbjct: 24 PAHDPKSLYALLLRFVAWRQERNWSETTLKVQTHHTYHFILWATDRGLYYAADITRPILE 83 Query: 118 HIRSGVESRKHT------PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171 + + + T + L ++V FKW +Q + NP +E P+ + Sbjct: 84 RYQRYLYQYRKTNGEPLSIRTQRTQLQPLQVWFKWLTKQNLILANPAADIELPREEKRLP 143 Query: 172 R-PWTKEDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--FSI 224 R + ++++ S G++ R E L +G+R S++ R + + + +I Sbjct: 144 RYILSIDEIEHILSLPDPNTLQGARDRALMELLWSTGIRRSEAARLDIYSIDGSRKTVTI 203 Query: 225 KTQKTGTIITVELPDGFMKLLA-----------MTPIGKETFFINNDKQKMNATQFSIWF 273 + K + L + + L +TP + F + + + Sbjct: 204 RQGKGNKDRVLPLGERALNWLQFYQQQIRPQLLVTPDIQSLFVAMDGLDGLQPNGITNAV 263 Query: 274 KAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 AG+ K H R AT + GA + A G +V+ + YT+ + R Sbjct: 264 SGYIRAAGIEKKGACHLFRHAMATQMLENGADLRWIQAMLGHASVESTQVYTQVSIRALQ 323 Query: 332 GIKNS 336 + S Sbjct: 324 AVHAS 328 >gi|291513999|emb|CBK63209.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301] Length = 390 Score = 115 bits (288), Expect = 9e-24, Method: Composition-based stats. Identities = 60/341 (17%), Positives = 105/341 (30%), Gaps = 44/341 (12%) Query: 35 LPYPHESTFIPA--YMSALTGST---------PKREYINSPRKKPTTLKWLISEYRKSAH 83 LP P AL +R +P K+ Y K Sbjct: 61 LPNPRTPEERQKNKETLALAAEIRIDKEKVLVARRYDKAAPVKQKINFLEFFDAYVK--- 117 Query: 84 WGSLAVNSRISFESYFDQIIRKSGD--------FDYRKITTKHIRSGVESRKHT--PSSA 133 + E + + ++T + + V+ + A Sbjct: 118 --NYKKKDIRMMEGCLRRFRGFLAESYPSMQTNIKPDQMTKEMMIKFVDYLQQHSFGEGA 175 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR-PWTKEDMQQFKSFWSEGSQP 192 F + + K+A+ Q+ + NPC V T + + E++ Q + + Sbjct: 176 RGFFQRFKKVIKYAIDQDILLKNPCTGVPCVVDDTALRKDVLSLEEIAQLANTPYQNMDV 235 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQK-----TGTIITVELPDGFMKLL 245 R AF F LY+GLR D ++ N K T +I+T+ L + +KL+ Sbjct: 236 RRAFLFCLYAGLRYCDVVDLKYSNVDYANKTIRFDQNKTTGHSTHSIVTIPLSNTLLKLI 295 Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISA-DAGA 302 P F + T + +AG+ K + H R A + Sbjct: 296 GERPEKDGPIFTL-----PSHTGCLKALRIWVARAGIEKHITWHCARHSFAVNLLGECHT 350 Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343 + + G + E YT+ D L K + +V Sbjct: 351 DIKTVASLLGHSGLKHTEKYTRAVDS--LKEKAVNALPELV 389 >gi|322418059|ref|YP_004197282.1| integrase family protein [Geobacter sp. M18] gi|320124446|gb|ADW12006.1| integrase family protein [Geobacter sp. M18] Length = 356 Score = 115 bits (288), Expect = 9e-24, Method: Composition-based stats. Identities = 55/343 (16%), Positives = 117/343 (34%), Gaps = 33/343 (9%) Query: 11 VTKERTRHGKIIYYFRKGHGRRIRLPY--PHESTFIPA-----YMSALTGSTPKREYINS 63 + + +T+ GK+ Y +RL P +TF + + + + + Sbjct: 4 IQERKTQDGKVTYRV------LVRLKGYPPQSATFERKTDAKKWAQQTEAAIREGRHFKT 57 Query: 64 PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123 K T+ ++ +Y K+ S+ + E + G + +T I Sbjct: 58 REAKKHTVAEMVDKYVKTV--LPTKPKSKDTQEGQLLWWKDEIGLYTLADVTPAMIGECR 115 Query: 124 ESRKH---------TPSSAIQFLTSMRVLFKWAV-RQEYVAINPCLSVERPKRKTEGIRP 173 + +P++ ++++ ++ F AV +V +P V++PK +R Sbjct: 116 DKLLAGKTKGGGLRSPATTVRYMAALSHAFSVAVNEWGWVEDSPMRKVKKPKEPRGRVRF 175 Query: 174 WTKEDMQQFKSFWSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKT 229 T ++ + L L +G+R S+ + + + K Sbjct: 176 LTDDERNRLLEAAKRSCNNCLYPVVLLALSTGMRFSEIMNLKWKDIDLKRKCLILHDTKN 235 Query: 230 GTIITVEL----PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS 285 G V + + + +G E F + M + W A + Sbjct: 236 GERRNVPVVNLAHSVLTERSKVRRLGTELVFPSISDPTMPSNLRKSWAAAVRDANLEDFR 295 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 H +R +A+ A GAT E+ G KT+ + Y +++ Sbjct: 296 FHDLRHSAASYLAMNGATLAEIAEVLGHKTLAMVKRYAHLSEQ 338 >gi|327198046|ref|YP_004306413.1| gp1 [Burkholderia phage KL3] gi|310657180|gb|ADP02294.1| gp1 [Burkholderia phage KL3] Length = 342 Score = 115 bits (288), Expect = 9e-24, Method: Composition-based stats. Identities = 58/349 (16%), Positives = 113/349 (32%), Gaps = 37/349 (10%) Query: 1 MTPSLRLPPFVTKERTRH---GKIIYYFRKG--HGRRIRLPYPHESTFIPAYMSALTGST 55 M + P + + R+R G + YY+ G GRRI P + + L G+ Sbjct: 1 MAGRAQTPGAIPRFRSRKNADGSLRYYYDHGEVDGRRILEPLGTDRVVALQRWAELEGAR 60 Query: 56 PKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT 115 S T L YR + ++ ++ + ++ G + +T Sbjct: 61 A-----PSSETTRHTFAMLEQAYRI-RELPQKSAATQRMYDLFLSRLTAVIGARELDTLT 114 Query: 116 TKHIRSGVESRKHTPS--SAIQFLTSMRVLFKWAVRQEYVA-INPCLSVERPKRKTEGIR 172 + + + +A + + ++ + NPC V R K++T Sbjct: 115 PADVATIWRATAEKRGVVTANRTKAVLSLVLNCGRLWGMMTIANPCAGV-RGKKETGRQD 173 Query: 173 PWTKEDMQQFKSFWSEGSQP-RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231 +++ + + ++ QP R A + R SD R ++ +TQKTG Sbjct: 174 ILIDDEL--YAAVYTVADQPLRNAMDLADLCAQRPSDVLRVQRSNIVRGNLIFRTQKTGA 231 Query: 232 IITVELPDGFMKLLAMTPI-------GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284 +TV++ L+ + + + + F +AG++K Sbjct: 232 FVTVQITGDLAALIERLLAWRGSKVDVSPYLLRDEEGYPLTKGKLRSRFDKARERAGIDK 291 Query: 285 SAHGVRKFSATISADAGATAHEL-------MATYGWKTVDQAETYTKGA 326 + KF G T + G Y +GA Sbjct: 292 A-----KFQFRDLRARGVTHKTIDEGLEAGQRLAGHSGPGMTARYVRGA 335 >gi|270290225|ref|ZP_06196450.1| tyrosine recombinase XerC [Pediococcus acidilactici 7_4] gi|304384961|ref|ZP_07367307.1| tyrosine recombinase XerC [Pediococcus acidilactici DSM 20284] gi|270281006|gb|EFA26839.1| tyrosine recombinase XerC [Pediococcus acidilactici 7_4] gi|304329155|gb|EFL96375.1| tyrosine recombinase XerC [Pediococcus acidilactici DSM 20284] Length = 301 Score = 115 bits (288), Expect = 9e-24, Method: Composition-based stats. Identities = 39/293 (13%), Positives = 99/293 (33%), Gaps = 29/293 (9%) Query: 73 WLISEYRKSAH-WGSLAVNSRISFE---SYFDQIIRKSGDFD----YRKITTKHIRSGVE 124 I ++++ + + ++ F + ++ +G+ + S + Sbjct: 2 DWIEQFKRYLTVERQYSDKTVTAYLEDLQEFQKFLQTTGNKPELLAVDRFDANVFMSYLF 61 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ--- 181 + +S + ++S+R +++ ++ + +A NP V+ K R + +++M Q Sbjct: 62 DQNLKRTSISRKVSSLRAFYRFLIKNDVIAKNPFEFVQLKKHADHLPRFFYEKEMNQLFD 121 Query: 182 --FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELP 238 ++ + E L +G+R S+ + ++ +I K V Sbjct: 122 TVYQDQGPLHLRNAALLEVLYGTGMRVSECTNLRWTDIDFSMQTILVLGKGNKERYVPFG 181 Query: 239 ------------DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS- 285 + + LL + F+N+ Q + + +N Sbjct: 182 RYAKHALEDYHQNEWTSLLEKYHQTHQYVFVNHYGQPITVAGVEYVLNQIIKNSSLNGKI 241 Query: 286 -AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 H +R AT + GA + G ++ + YT + +L + Sbjct: 242 HPHMLRHSFATAMLNNGADLRTVQELLGHASLSTTQIYTH-VTKEKLQESYRK 293 >gi|227513451|ref|ZP_03943500.1| site-specific recombinase XerD [Lactobacillus buchneri ATCC 11577] gi|227524593|ref|ZP_03954642.1| site-specific recombinase XerD [Lactobacillus hilgardii ATCC 8290] gi|227083324|gb|EEI18636.1| site-specific recombinase XerD [Lactobacillus buchneri ATCC 11577] gi|227088268|gb|EEI23580.1| site-specific recombinase XerD [Lactobacillus hilgardii ATCC 8290] Length = 331 Score = 115 bits (288), Expect = 9e-24, Method: Composition-based stats. Identities = 39/281 (13%), Positives = 96/281 (34%), Gaps = 31/281 (11%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD--------FDYRKITTKHIRSGV 123 W + Y +S + ++ ++++ + ++ + + +G+ Sbjct: 29 DWFLK-YLRSER--HYSEDTVQAYQNDLTEFLKFLNETSKDHTSLIKIDSFDVESYLTGL 85 Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 +K+ +S Q ++++R + + ++ E + NP V + R + +MQ Sbjct: 86 YDKKYARNSIAQKVSALRSFYGFLIKNEVIKNNPFEYVHLKNQNRRLPRFFYPTEMQALF 145 Query: 184 SFWSEGSQPRL-----AFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVE- 236 S +G + E +G+R S+ ++ + N + T K V Sbjct: 146 SAAKKGERKLAFRNSAILEVFYSTGIRVSEGVTIQLKDIDLENQLILVTGKGRKQRYVPF 205 Query: 237 -----------LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--N 283 L + L+ + F+N+ + + + ++ + N Sbjct: 206 GEPAKRAVESYLKESREPLMTKYHQKHDYLFVNHFGKPLTSRGIEYILNGIIKQSSLTTN 265 Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R AT + GA + G ++ + YT Sbjct: 266 IHPHMLRHTFATEMLNNGADMRSVQELLGHSSLSTTQIYTH 306 >gi|323500158|ref|ZP_08105103.1| site-specific tyrosine recombinase XerC [Vibrio sinaloensis DSM 21326] gi|323314787|gb|EGA67853.1| site-specific tyrosine recombinase XerC [Vibrio sinaloensis DSM 21326] Length = 310 Score = 115 bits (288), Expect = 9e-24, Method: Composition-based stats. Identities = 39/268 (14%), Positives = 96/268 (35%), Gaps = 22/268 (8%) Query: 77 EYRKSAHWGSLAVNSRISFESYFDQIIR---KSGDFDYRKITTKHIRSGV---ESRKHTP 130 EY +S L+++++ +++ + + + + G D+ ++ + +R Sbjct: 21 EYLRSE--KGLSLHTQRNYKQQLETMAQHLVQLGLKDWSQVDSAWVRQLASKGMRDGMKA 78 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---WS 187 SS L+S+R F + + + ++ NP V P++K + +++ Q Sbjct: 79 SSLATRLSSLRSFFDFLILRGEMSANPAKGVSAPRKKRPLPKNLDVDEVGQLLEVNEDDP 138 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE--------LP 238 + R E + +GLR ++ V+ + I+ K V + Sbjct: 139 LSVRDRAMMEMMYGAGLRLAELVSINVRDVSFTSGEIRVVGKGDKERKVPFSGMAAEWVN 198 Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATI 296 ++ ++ F++ +++ K V + S H +R AT Sbjct: 199 KWLKVRASLANSDEQALFVSKLGVRISHRNVQKRMAEWGQKQAVASHISPHKLRHSFATH 258 Query: 297 SADAGATAHELMATYGWKTVDQAETYTK 324 ++ + G + + + YT Sbjct: 259 VLESSNNLRAVQELLGHENISTTQIYTH 286 >gi|193222420|emb|CAL63069.2| Tyrosine recombinase xerC [Herminiimonas arsenicoxydans] Length = 318 Score = 115 bits (288), Expect = 9e-24, Method: Composition-based stats. Identities = 53/303 (17%), Positives = 98/303 (32%), Gaps = 47/303 (15%) Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD-------YRKITTKHIRS 121 L LIS+ L+ + S+ +++ + D + + Sbjct: 12 GYLDNLISQ-------RQLSPLTITSYRRDLLELLALATASDGNAALSAISHFQIRKFAA 64 Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 + ++ S + L++ R F W Q VA NP ++ PKR + +D + Sbjct: 65 QLHAKGLNARSIARKLSAWRGFFTWLSEQNAVASNPVDGIKAPKRNKPLPKALAADDAVR 124 Query: 182 FKSFWSEGSQP--------RLAFEFLLYSGLRCSDSCRA-------------GVQHLQNN 220 S S G R FE L SGLR S+ G + Sbjct: 125 LVSSNSPGKNADATMQLCNRAMFELLYSSGLRASELVGLDLKYAQENRYTSAGWIDFDAH 184 Query: 221 IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET--------FFINNDKQKMNATQFSIW 272 ++ T K + + + + L ++T F++ +++A + Sbjct: 185 E-AMVTGKGSKMRSAPIGQPAIDALKAWLAVRDTLLKLDPHPLFLSERGTRISARVLQLR 243 Query: 273 FKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 KA A G+ H +R A+ + + G ++ + YT D R Sbjct: 244 LKAHAQAVGLPMDVHPHVLRHSFASHVLQSSGDLRAVQEMLGHASISATQIYT-SLDFQR 302 Query: 331 LGI 333 L Sbjct: 303 LAQ 305 >gi|317128823|ref|YP_004095105.1| integrase family protein [Bacillus cellulosilyticus DSM 2522] gi|315473771|gb|ADU30374.1| integrase family protein [Bacillus cellulosilyticus DSM 2522] Length = 280 Score = 115 bits (288), Expect = 9e-24, Method: Composition-based stats. Identities = 54/264 (20%), Positives = 102/264 (38%), Gaps = 12/264 (4%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV--ESRKH 128 L L Y + + + + S+ +IR GD + +T H+++ + E ++ Sbjct: 3 LSELWLHYEQDKTLENYSKKTLKSYRLELGLLIRFLGDMEAEDVTIFHLKNYLIEEQKRL 62 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 PSS +R F+WA + ++ NP + V+ PK +P +E ++ + S+ Sbjct: 63 KPSSFQHRCKFIRSFFRWAHEYDLLSKNPAIKVKMPKDHYRIPKPVNEETLELLR-IASK 121 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLLAM 247 L EF+ +G+R + + N K V + Sbjct: 122 SPLEGLLVEFMYSAGVRVGEVYNLNKKDFNFTNRSVYVFGKGDKEREVYFSKRAEIWIQR 181 Query: 248 TPIGK----ETFFINNDK--QKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISAD 299 + E F + +K ++M+ Q FK A KA V+++ H +R A+ + Sbjct: 182 YFDSRQDEEECFICSKNKPYRRMSIDQIRWHFKKLARKAEVDENVYPHRLRHSYASHLIN 241 Query: 300 AGATAHELMATYGWKTVDQAETYT 323 GA+ + G K + YT Sbjct: 242 RGASLEMVRDMLGHKRTETTRVYT 265 >gi|270293803|ref|ZP_06200005.1| conserved hypothetical protein [Bacteroides sp. D20] gi|270275270|gb|EFA21130.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 386 Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats. Identities = 50/303 (16%), Positives = 103/303 (33%), Gaps = 26/303 (8%) Query: 39 HESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSA-----HWGSLAVNSRI 93 ++ F+ Y R + + Y + + + Sbjct: 88 EDTPFLEYYRK----MVEDRHKNPESKGNWGNWRS-CLRYLEIYCDEKTTFKDITPEFIA 142 Query: 94 SFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYV 153 F+ + D + + + +++ + R + + +S + + +R A + + Sbjct: 143 GFKDFLDNVEKDT----HKRTGPRRERDVF--QGLSQNSKVSYFNKLRACINQAYDERII 196 Query: 154 AINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAG 213 ++NP +E K T E+++Q + + AF F +GLR SD + Sbjct: 197 SVNPLRGIEGFKAAEVKRDYLTLEEVKQLAATPCRYPILKRAFLFSCLTGLRKSDIQKLT 256 Query: 214 VQHL----QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF 269 + K +KTG +++ K L ++ F + + Sbjct: 257 WSEVQKFGDYTRIIFKQKKTGGQEYLDISPQAEKYLGERGNPEDPVFTGFTYGSWTSVEL 316 Query: 270 SIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 W + KAGVNK + H R A + D GA + + G K + + Y K D Sbjct: 317 QRW----SMKAGVNKNLTFHCGRHTFAVLMLDLGADIYTVSKLLGHKELATTQIYAKVLD 372 Query: 328 RIR 330 + + Sbjct: 373 KNK 375 >gi|227875332|ref|ZP_03993474.1| tyrosine recombinase [Mobiluncus mulieris ATCC 35243] gi|227844237|gb|EEJ54404.1| tyrosine recombinase [Mobiluncus mulieris ATCC 35243] Length = 319 Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats. Identities = 44/284 (15%), Positives = 93/284 (32%), Gaps = 32/284 (11%) Query: 85 GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKHTPSS--------A 133 + ++ +++ + + G ++T + V + +S Sbjct: 28 RGASPHTIAAYQRDLQRYVAYLQILGRDTLAQVTEVDLEGFVRALGDGFASFPPLGSTSV 87 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG---- 189 + L + R ++ + N SV+ K + E+M+ + S Sbjct: 88 RRCLAAARSWHRYLFDSGSLGANVASSVKPAKLPRRLPETLSLEEMEALLAAASSPGDSN 147 Query: 190 -SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELP-----DGF 241 + R EFL SG R S++ + + ++ G + + Sbjct: 148 SLRDRALLEFLYASGARISEAMNLVLDDIDFETEPALVRLFGKGRKERISMLGHQACQAL 207 Query: 242 MKLL-AMTPI------GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKF 292 L + P + F+N + M+ +A A +A +++ H +R Sbjct: 208 QAYLVRVRPTLAEKGQSRGRVFLNTYGKPMSRQTAWAIIQAAAKRAQIDRPVHPHTLRHC 267 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336 AT GA + G +V E YTK + ++ L + S Sbjct: 268 FATHLLQGGADIRVVQELLGHASVTTTEIYTKVSKQMLLEVYAS 311 >gi|323344611|ref|ZP_08084835.1| tyrosine recombinase XerC [Prevotella oralis ATCC 33269] gi|323093881|gb|EFZ36458.1| tyrosine recombinase XerC [Prevotella oralis ATCC 33269] Length = 293 Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats. Identities = 49/277 (17%), Positives = 101/277 (36%), Gaps = 28/277 (10%) Query: 74 LISEYRKSAHW-GSLAVNSRISF-------ESYFDQIIRKSGDFDYRKITTKHIRSGVES 125 +I E+ + + + + ++ ESYF +I ++ + + Sbjct: 2 MIEEFLDYLRYERNRSAQTVKNYDEDLKAFESYFKKINKELSWESVDSDVIRGWMESMMD 61 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF--K 183 + + +S + L+++R L+++A+ + YV +P V PKR + + +M + Sbjct: 62 KGNIATSINRRLSALRSLYRFALSKGYVDSDPAYGVVGPKRAKPLPQFLKEREMDELLGL 121 Query: 184 SFWSEGSQPRLAFEFLLY---SGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPD 239 + W +G + A+ L+ +G+R S+ + N + K + D Sbjct: 122 TVWKDGFKNVRAYTILIMFYETGMRLSELVGLNDSSVDFVNRQFKVSGKRNKQRLIPFGD 181 Query: 240 GFMKLLAM--------TPIGKETFFINNDKQKMNATQFSIWFK----AKATKAGVNKSAH 287 L M + F+ ++ ++MN Q K T K+ H Sbjct: 182 ELDTSLRMYLELRNESVGRKSDALFVTSEGKRMNQDQVRYEVKKNLSKVCTLK--KKTPH 239 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 +R AT + A + G +V E YT Sbjct: 240 VLRHTFATAMLNHDANIESVRKLLGHASVGTTEVYTH 276 >gi|217963765|ref|YP_002349443.1| integrase/recombinase, putative [Listeria monocytogenes HCC23] gi|217333035|gb|ACK38829.1| integrase/recombinase, putative [Listeria monocytogenes HCC23] gi|307571661|emb|CAR84840.1| integrase/recombinase, putative [Listeria monocytogenes L99] Length = 314 Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats. Identities = 38/267 (14%), Positives = 100/267 (37%), Gaps = 18/267 (6%) Query: 76 SEYRKSAHWGSLAVNSRISFESYFDQIIRKSG----DFDYRKITTKHIRSGVESRKH--T 129 E+ +S ++ + + + + R ++ + + + K Sbjct: 28 QEFIRSRRIRNVRETTIQYYTDAINVLKRDREYIHVQKPIMHLSQRDLEDMIMYWKGFMR 87 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 ++ + + + + + +Q ++ INPC ++ + + E +++++ + + + Sbjct: 88 ANTINSKIKAFKAYYNFLYQQGFIKINPCENLSLLRVREEIRETLNPDEIKKIANHFKKK 147 Query: 190 S-----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244 + + F+ LL +G+R S++ +Q + ++ + K V + + Sbjct: 148 ETFSSYRDLVIFQLLLDTGIRISEAVGINIQDIHSDYIIVVESKNLKQRIVYISKRMREK 207 Query: 245 L--AMTPIGKET---FFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS 297 L + G + FIN D+ N F + G+ K S H R+ A + Sbjct: 208 LTSYLKIRGNLSHTKVFINRDQLPYNKNTFQQNLREARVLCGIQKQVSPHVCRRTYAKNA 267 Query: 298 ADAGATAHELMATYGWKTVDQAETYTK 324 +G A L G +++ + Y + Sbjct: 268 ILSGMDAFSLATLLGHSSLEVTKRYVQ 294 >gi|27467846|ref|NP_764483.1| xerC protein [Staphylococcus epidermidis ATCC 12228] gi|57866718|ref|YP_188400.1| tyrosine recombinase XerC [Staphylococcus epidermidis RP62A] gi|282876316|ref|ZP_06285183.1| tyrosine recombinase XerC [Staphylococcus epidermidis SK135] gi|34222792|sp|Q7ZAJ4|XERC_STAES RecName: Full=Tyrosine recombinase xerC gi|81674902|sp|Q5HPU0|XERC_STAEQ RecName: Full=Tyrosine recombinase xerC gi|27315391|gb|AAO04525.1|AE016747_22 xerC protein [Staphylococcus epidermidis ATCC 12228] gi|57637376|gb|AAW54164.1| tyrosine recombinase XerC [Staphylococcus epidermidis RP62A] gi|281295341|gb|EFA87868.1| tyrosine recombinase XerC [Staphylococcus epidermidis SK135] gi|329736214|gb|EGG72486.1| tyrosine recombinase XerC [Staphylococcus epidermidis VCU028] gi|329736604|gb|EGG72870.1| tyrosine recombinase XerC [Staphylococcus epidermidis VCU045] Length = 296 Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats. Identities = 34/265 (12%), Positives = 94/265 (35%), Gaps = 20/265 (7%) Query: 85 GSLAVNSRISFESYFDQI-----IRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139 + + + S+ Q + ++ + + S + ++ + +++ Sbjct: 16 RNFSEYTLKSYHDDLVQFNNFLEREHLQLETFEYKDARNYLAFLYSNQLKRTTVSRKIST 75 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF----KSFWSEGSQPRLA 195 +R +++ + Q+ INP + + PK++ + + +E+M+ + +G + ++ Sbjct: 76 LRTFYEFWMTQDNSIINPFVQLVHPKKEKYLPQFFYEEEMEALFQTVEHDNKKGIRDKVI 135 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE--------LPDGFMKLLA 246 E L +G+R S+ ++ + N+ +K K + + + Sbjct: 136 IELLYATGIRVSELINIKLKDIDMNLPGVKVLGKGNKERFIPFGEFCRQSIERYLEEFQP 195 Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATK-AGV-NKSAHGVRKFSATISADAGATA 304 + +N + + AGV + H +R AT + GA Sbjct: 196 KQLANHDYLIVNMKGDPITERGVRYVLNDVVKRTAGVNDIHPHKLRHTFATHLLNQGADL 255 Query: 305 HELMATYGWKTVDQAETYTKGADRI 329 + + G + YT +++ Sbjct: 256 RTVQSLLGHVNLSTTGRYTHVSNQQ 280 >gi|317121809|ref|YP_004101812.1| integrase family protein [Thermaerobacter marianensis DSM 12885] gi|315591789|gb|ADU51085.1| integrase family protein [Thermaerobacter marianensis DSM 12885] Length = 336 Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats. Identities = 54/319 (16%), Positives = 102/319 (31%), Gaps = 38/319 (11%) Query: 48 MSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS 106 MSA P+ P ++ Y LAV + ++ + + Sbjct: 1 MSARGAPQPEGPGRPEAGGPPA--ADVVEAYLDHLRLERGLAVRTLEAYAADLAGWLDFL 58 Query: 107 GDFDYRKITT---------KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINP 157 G T + + ++ R S+ + L ++R LF++AVR+ ++ +P Sbjct: 59 GLEPPVDAATLGRVTGRDLRRWLAQLDQRGLQRSTVARKLAAVRGLFRFAVREGWIPASP 118 Query: 158 CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG-----SQPRLAFEFLLYSGLRCSDSCRA 212 + P+ + R +T E+ + G + R E L GLR + Sbjct: 119 AARLGTPRVRRRLPRVYTPEEARALLEAAGAGTGPAALRNRALLELLYGCGLRVGELSGL 178 Query: 213 GVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAM------------------TPIGKE 253 + + ++ K G + L L P ++ Sbjct: 179 DLDDVDWEGGWLRVYGKGGKERILPLAGPVAAALRAYVEDGRPHLAAARGSRPCPPGDRQ 238 Query: 254 TFFINNDKQKMNATQFSIWFKAK-ATKAGVNKSAHGVRKFSATISADAGATAHELMATYG 312 F+N +++ + A A + H +R AT D GA + G Sbjct: 239 AVFLNRWGGRLSPRSIQAIVRKAGAVVARLEAHPHLLRHTFATHLLDGGAGLRAVQELLG 298 Query: 313 WKTVDQAETYTKGADRIRL 331 ++ + YT R RL Sbjct: 299 HASLAATQIYTH-VSRARL 316 >gi|313676041|ref|YP_004054037.1| integrase family protein [Marivirga tractuosa DSM 4126] gi|312942739|gb|ADR21929.1| integrase family protein [Marivirga tractuosa DSM 4126] Length = 372 Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats. Identities = 46/261 (17%), Positives = 86/261 (32%), Gaps = 15/261 (5%) Query: 76 SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR---SGVESRKHTPSS 132 Y + A+ + ++ + FD+ R I I+ G+ RK++ S Sbjct: 103 EAYFQKLELKRYALKTAENYTACFDRFKRHFPTRKLMSIDETDIKNYLKGLAQRKYSDSF 162 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192 + S++ F + V + N +ERP + +KE++ + + + Sbjct: 163 VNLSINSIK--FYYEVVEGM--PNRFYDIERPMKTERLPEILSKEEVIAMINK-TFNIKH 217 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIG 251 + L SGLR + + + +I+ Q G + + L Sbjct: 218 QCIISILYSSGLRRGELLNLKLSDIDGKRMTIRVEQGKGKKDRYSILSEKLLLKLRLYYK 277 Query: 252 K----ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAH 305 + F Q + + A A +NK H +R AT +AG Sbjct: 278 QYKPTHYLFEGKKGQPYSGSSVRQIVAKAAKNANINKPVRPHMLRHSFATHLLEAGTDLR 337 Query: 306 ELMATYGWKTVDQAETYTKGA 326 + G + E YT A Sbjct: 338 HIQLLLGHNSTKTTEIYTHVA 358 >gi|237711591|ref|ZP_04542072.1| integrase [Bacteroides sp. 9_1_42FAA] gi|229454286|gb|EEO60007.1| integrase [Bacteroides sp. 9_1_42FAA] Length = 380 Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats. Identities = 49/252 (19%), Positives = 93/252 (36%), Gaps = 27/252 (10%) Query: 101 QIIRKSGDFDYRKITTKHIRSGVESRKHT----------PSSAIQFLTSMRVLFKWAVRQ 150 +++ D R + + ++ + + P +A + T++R AVR+ Sbjct: 123 NLLKFRADARLRDLDKQFYLDYIDWLRSSCKTAWGKPVSPKTAHSYYTTLRTALNEAVRE 182 Query: 151 EYVAINP------CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGL 204 + + NP ++ P+ K + T E++++ + R A+ F + GL Sbjct: 183 KLIESNPWYKLEMTEKIKVPESKRD---FLTIEEIKKMIATPFFNEHVRQAYLFSCFCGL 239 Query: 205 RCSDSCRAGVQHL---QNNIF-SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINND 260 R SD + + + S+ KT + + L +K L + Sbjct: 240 RISDIRKLRWRDISISGGQWLVSVVMTKTTNPVYIPLSSQAVKWLPERKDCAPEDLV--F 297 Query: 261 KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318 NA I K A KAGV K + H R A + GA + + G ++V Sbjct: 298 GGLPNAGNLCISLKNWADKAGVKKNVTFHTARHSCAVLLLTLGADIYTVSKILGHRSVRA 357 Query: 319 AETYTKGADRIR 330 + Y K D+ + Sbjct: 358 TQVYAKIVDKKK 369 >gi|262404865|ref|ZP_06081419.1| tyrosine recombinase XerC [Vibrio sp. RC586] gi|262348949|gb|EEY98088.1| tyrosine recombinase XerC [Vibrio sp. RC586] Length = 310 Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats. Identities = 35/268 (13%), Positives = 91/268 (33%), Gaps = 22/268 (8%) Query: 77 EYRKSAHWGSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIRSGV---ESRKHTP 130 Y S L++ ++ +++ + + + + G + ++ +R V + + Sbjct: 22 AYLHSE--KGLSLYTQRNYKQQLETMARYLAQVGLTSWPQLDAAWVRQLVVLGKRQGMKA 79 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---S 187 SS L+S+R + + + + NP V P+++ + ++M Q Sbjct: 80 SSISTRLSSLRSFLDFLILRGELQANPAKGVSAPRKQRPLPKNLDVDEMAQLLEVTDDDP 139 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVE-------LP 238 + R E + SGLR ++ V+ + ++ + + + Sbjct: 140 LSIRDRAIMELMYGSGLRLAELVSIDVKDVNLRDGEIRVIGKGNKERKVWFAGQAQEWVG 199 Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATI 296 + + + F++ +++ K V + S H +R AT Sbjct: 200 NWLKLRSQLANSDETALFVSKLGTRISHRSVQKRMAEWGQKQAVASHISPHKLRHSFATH 259 Query: 297 SADAGATAHELMATYGWKTVDQAETYTK 324 ++ + G + + + YT Sbjct: 260 MLESSNNLRAVQELLGHENIATTQIYTH 287 >gi|253566649|ref|ZP_04844102.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_2_5] gi|251944821|gb|EES85296.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_2_5] Length = 293 Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats. Identities = 44/275 (16%), Positives = 99/275 (36%), Gaps = 24/275 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIR----KSGDFDYRKITTKHIRSGV---ES 125 L + + + + + +++ Q+ + FD ++ + +R + Sbjct: 2 LTDSFLDYLRYERNYSEKTVLAYGEDISQLREFAQERMEKFDPAEVKPELVREWIVSLMD 61 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + +T +S + L+S+R +K+ +RQ V+++P + PK K + +M + Sbjct: 62 QGYTSTSVNRKLSSLRSFYKYLLRQGEVSVDPLRKITGPKNKKPLPSFLKESEMNKLLDD 121 Query: 186 WS-----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPD 239 +G + RL E +G+R S+ + + + +K T K + D Sbjct: 122 TDFGEGLKGCRDRLIIEMFYATGMRLSELIGLDDKDVDFSASLLKVTGKRNKQRLIPFGD 181 Query: 240 GFMKLL--------AMTPIGKETFFINNDKQKMNATQFSIWFKA--KATKAGVNKSAHGV 289 + + M + FF+ + +++ K +S H + Sbjct: 182 ELKETMLEYVDIRNEMISGRSDAFFVRENGERLYKNLVYNLVKRNLSKVVTLKKRSPHVL 241 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 R AT + A + G ++ E YT Sbjct: 242 RHTFATTMLNNDAELGAVKELLGHSSLATTEIYTH 276 >gi|182415361|ref|YP_001820427.1| integrase family protein [Opitutus terrae PB90-1] gi|177842575|gb|ACB76827.1| integrase family protein [Opitutus terrae PB90-1] Length = 324 Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats. Identities = 49/278 (17%), Positives = 94/278 (33%), Gaps = 29/278 (10%) Query: 82 AHWGSLAVNSRISFESYFDQIIR---KSG--DFDYRKITTKHIRSGV--ESRKHTPSSAI 134 AH + + ++ F+ R +G + + + + +R V R+ + Sbjct: 37 AHERRYSAYTVRNYRQAFEDFYRWLVLAGVWERGFDALQMRELRDFVIEAQRRFGRRTLH 96 Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE------ 188 ++ +R FK+ +R+ V NP L V PK + + T+E M + + + Sbjct: 97 NHVSGLRSFFKFWLRRGKVQRNPFLGVPLPKLEKRLPKFLTEEQMVRLLAGPQQLLASES 156 Query: 189 -----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT--------IITV 235 + RL E L +GLR S+ + + G + V Sbjct: 157 IDAFTAHRDRLVLELLYGAGLRVSELTGLNYGAIDLEAGVARIVGKGRKERLCPIGRVAV 216 Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFS 293 + F A + +M+ + + K A + + + H +R Sbjct: 217 AVLRKFRDEFAPATAPDAPVIVTQRGTRMSPREVQLMLKRYLALAELPMDLTPHKLRHSY 276 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 AT +AGA + G + + YT RL Sbjct: 277 ATHLLNAGADLRLVQELLGHAQLATTQVYTH-VSVARL 313 >gi|126175915|ref|YP_001052064.1| phage integrase family protein [Shewanella baltica OS155] gi|125999120|gb|ABN63195.1| phage integrase family protein [Shewanella baltica OS155] Length = 376 Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats. Identities = 58/319 (18%), Positives = 111/319 (34%), Gaps = 17/319 (5%) Query: 23 YYFR---KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYR 79 YY R +G + + ++ T A + A R + TL E+ Sbjct: 43 YYVRFQYQGLRQLHVIGNANDITLDDARLEARKHIDALRYGVVREPAPSLTLCAFAEEFF 102 Query: 80 KSAHWGS-LAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFL 137 + ++ ++ + F I GD +T +HI + + A + L Sbjct: 103 --PRYARHWKPSTLLNSQRGFTRHIAPVLGDVPLAALTRQHIEQWFDGMHASKGMANRLL 160 Query: 138 TSMRVLFKWAVRQEY--VAINPCLSVERPKRKTEGIRPWTKEDMQ----QFKSFWSEGSQ 191 + V+ + A EY NPC +R K T R ++E+++ S Sbjct: 161 PLLSVMMQQAEVYEYRPAQSNPCKGFKRYK-STHSERYLSEEELKRLWLALDSHEKASPV 219 Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTP-I 250 + L+ +G RC++ C + + + KTG TV L +LL+ P + Sbjct: 220 AVMVLRLLILTGCRCNEVCSVKWADYRQGHWYLPDSKTGAK-TVFLSSFARELLSDWPQV 278 Query: 251 GKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMA 309 + F+ + Q + +++ + + H +R A+I+ + Sbjct: 279 SEHLFWHQSPSQPFTPARLDRFWRPFRETIHLNDVRIHDLRHTYASIAVKHNINILTIGR 338 Query: 310 TYGWKTVDQAETYTKGADR 328 G + YT A R Sbjct: 339 LLGHALPETTLKYTHLAKR 357 >gi|90961925|ref|YP_535841.1| XerC/CodV family integrase/recombinase [Lactobacillus salivarius UCC118] gi|90821119|gb|ABD99758.1| Integrase/recombinase, XerC/CodV family [Lactobacillus salivarius UCC118] gi|300214646|gb|ADJ79062.1| Integrase/recombinase, XerC/CodV family [Lactobacillus salivarius CECT 5713] Length = 298 Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats. Identities = 38/265 (14%), Positives = 91/265 (34%), Gaps = 25/265 (9%) Query: 85 GSLAVNSRISF----ESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT--PSSAIQFLT 138 + + ++ + + D I G +++I + + + + +S + ++ Sbjct: 17 KQYSDETLKAYSEDLQHFVDFIDETGGAKSFKEIGSNDVHAYMSYLYDRYEMTSISRMIS 76 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRL 194 S+R + + ++ E NP V+ + R + +++M + + R Sbjct: 77 SLRAFYNFLIKNELTDENPFAYVQLKRHPRSLPRFFYEKEMTALFEATEGDTQMLIRDRA 136 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLLAM------ 247 E L +G+R S+ ++++ N + K V + L Sbjct: 137 LLESLYGTGMRVSECTGLKMENVDLTNKKMLLHGKGDKDRLVPFGSYCQEALQRYFEQTR 196 Query: 248 TP------IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISAD 299 TP + F+N+ + + K ++ ++ S H +R AT Sbjct: 197 TPLMEKYHRDHDLVFVNHYGNPLTPAGVAYILKQIVKRSSLHTSIHPHELRHTFATHLMS 256 Query: 300 AGATAHELMATYGWKTVDQAETYTK 324 GA + G ++ + YT Sbjct: 257 NGADLRAVQELLGHSSLSTTQIYTH 281 >gi|24376272|ref|NP_720380.1| phage integrase family site specific recombinase [Shewanella oneidensis MR-1] gi|24344844|gb|AAN52980.1|AE015912_5 site-specific recombinase, phage integrase family [Shewanella oneidensis MR-1] Length = 376 Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats. Identities = 59/319 (18%), Positives = 111/319 (34%), Gaps = 17/319 (5%) Query: 23 YYFR---KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYR 79 YY R +G + + ++ T A + A R + S TL E+ Sbjct: 43 YYVRFQYQGLRQLHVIGNANDITLDDARLEARKHIDALRYGVVSEPVPSLTLCAFAEEFF 102 Query: 80 KSAHWGS-LAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFL 137 + ++ ++ + F I GD +T +HI + + A + L Sbjct: 103 --PRYARHWKPSTLLNSQRGFTRHIAPVLGDVPLAALTRQHIEQWFDGMHASKGMANRLL 160 Query: 138 TSMRVLFKWAVRQEY--VAINPCLSVERPKRKTEGIRPWTKEDMQ----QFKSFWSEGSQ 191 + V+ + A EY NPC +R K T R ++E+++ S Sbjct: 161 PLLSVMMQQAEVYEYRPAQSNPCKGFKRYK-STHSERYLSEEELKRLWLALDSHEKASPV 219 Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTP-I 250 + L+ +G RC++ C + + + KTG TV L +LL+ P + Sbjct: 220 AVMVLRLLILTGCRCNEVCSVKWADYRQGHWYLPDSKTGAK-TVFLSSFARELLSDWPQV 278 Query: 251 GKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMA 309 + F+ + Q +++ + + H +R A+I+ + Sbjct: 279 SEHLFWHQSPSQPFTPACLDRFWRPFRETIHLNDVRIHDLRHTYASIAVKHNINILTIGR 338 Query: 310 TYGWKTVDQAETYTKGADR 328 G + YT A R Sbjct: 339 LLGHALPETTLKYTHLAKR 357 >gi|294791028|ref|ZP_06756186.1| tyrosine recombinase XerD [Scardovia inopinata F0304] gi|294458925|gb|EFG27278.1| tyrosine recombinase XerD [Scardovia inopinata F0304] Length = 318 Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats. Identities = 40/270 (14%), Positives = 88/270 (32%), Gaps = 30/270 (11%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKI------TTKHIRSGVESRKHTPSSAIQFLT 138 LA + ++ES + + + + + + S + L Sbjct: 31 RGLAAATVKAYESDLIKYVSWLTHKKVTDPGQISQQNVEDFVASLSLAGESQKSIARRLA 90 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF-------KSFWSEGSQ 191 S+ ++ + + + +V+ PK T +++ + + + Sbjct: 91 SIHEYHRYLSSRGQIQTDVSQTVKPPKAAAHLPDVLTIDEVSRMMEMTSTERDTDPVILR 150 Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVEL------------- 237 R EFL +G R S++ + L ++ + K V L Sbjct: 151 DRALLEFLYATGARVSEAVGLNMTDLDLDSRCARLMGKGSKQRLVPLGSYACSALNRYLH 210 Query: 238 -PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSA 294 P +++ A + F+N ++++ +A A +A ++K H +R A Sbjct: 211 GPRQYLQDKARSGPELRAVFLNKRGKRLSRQSVWEIVQAAANRAHISKEVHPHTLRHSCA 270 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTK 324 T GA + G +V + YT Sbjct: 271 THLIRGGADVRTVQELLGHASVTTTQLYTH 300 >gi|146297605|ref|YP_001181376.1| phage integrase family protein [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145411181|gb|ABP68185.1| phage integrase family protein [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 286 Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats. Identities = 46/284 (16%), Positives = 103/284 (36%), Gaps = 25/284 (8%) Query: 76 SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF--------DYRKITTKHIRSGVESRK 127 EY K+ + N+ S+ + +R D + + +S + + Sbjct: 6 EEYLKTQDFT---ENTIKSYTKDVELFMRWYVDTTGQEFLPENLTEFDLVEYKSYLLRKN 62 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE--GIRPWTKEDMQQFK-S 184 H PS+ + + S+R + + + + + +++ K T K+D+ +F+ + Sbjct: 63 HKPSTVNRSIISLRKFVHFLLDRGLLNKDISTRLKQVKDTTRNLSPVVLDKKDIYKFRRT 122 Query: 185 FWSEG-SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIK-TQKTGTIITVELPDG 240 G ++ E LL +G+R S++ ++ ++ +K K + V L Sbjct: 123 VHQFGKTRDVALVELLLNTGMRISEAINLKLEDVEISERKGKVKIWGKGRSYREVPLNSD 182 Query: 241 ----FMKLLAMTP-IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSAT 295 + L P F+ + +K+ + A AG+ H +R F A Sbjct: 183 ARKYLSEYLKKRPYSETNYLFVTSTGKKLTRNSAYKIIQKYAKLAGLCLHPHMLRHFFAQ 242 Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339 D G +++ G + ++ Y K +L + + Sbjct: 243 TLIDKGLNIYDVQQLLGHQRIETTLRYKKP--NTKLQEEMVENL 284 >gi|291485998|dbj|BAI87073.1| hypothetical protein BSNT_05256 [Bacillus subtilis subsp. natto BEST195] Length = 329 Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats. Identities = 44/268 (16%), Positives = 85/268 (31%), Gaps = 26/268 (9%) Query: 86 SLAVNSRISFESYFDQIIRKSGDFD---YRKITTKHIRS----GVESRKHTPSSAIQFLT 138 + + + Y+ + + +G IT H+RS + R +P + L Sbjct: 44 NYRERTINDYRKYWSEFMEVAGIQPTDNITDITEDHLRSYISTMLNVRDLSPVTINIRLG 103 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRL 194 ++ + ++ + NP V + + + I+ T +++F G + + Sbjct: 104 GIKSILSRMTKRGLINENPAKRVTKLRVDEKTIKMLTDSQVRRFFKMIDKDTFPGFRDYV 163 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSI----KTQKTGTIITVELPDGFMKLLAMTPI 250 AF L GLR ++ + + + I K V + + + L Sbjct: 164 AFLIALKCGLRSNELEGLKPEDIDFDNLVIMLPGAVNKNRKNRMVPMTEQVAEELRQLLT 223 Query: 251 ------GKET-FFINNDKQKMNATQFSIWFKAKATKAGVNK----SAHGVRKFSATISAD 299 G T F+N +K+ A + K S H +R A Sbjct: 224 EMTEYFGTFTHVFVNQYGEKIAKDHLRKRAAKYGEMADLKKECRPSLHSLRHTFAINYLR 283 Query: 300 AGATAHELMATYGWKTVDQAETYTKGAD 327 G+ L G + E Y D Sbjct: 284 NGSDIRSLQKIMGHADLASTEIYLDYVD 311 >gi|309807963|ref|ZP_07701891.1| site-specific recombinase, phage integrase family [Lactobacillus iners LactinV 01V1-a] gi|308168814|gb|EFO70904.1| site-specific recombinase, phage integrase family [Lactobacillus iners LactinV 01V1-a] Length = 166 Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats. Identities = 29/160 (18%), Positives = 53/160 (33%), Gaps = 15/160 (9%) Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVEL 237 + + G + R E L +G+R S+ + + IK K + + Sbjct: 2 INMPDTTTDLGIRDRAILETLYATGMRVSEVINLNEDSIHEELHLIKVFGKGSKQRLIPI 61 Query: 238 PDGFMKLLAMTPIG------------KETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284 + M + I ++ F+N+ K+ K AG+NK Sbjct: 62 SNVAMSWIKKYQITVRNKTLLESGKFEKAIFLNSRGGKITRQAVWQMIKRYCQLAGINKN 121 Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 + H +R AT + GA + G + + YT Sbjct: 122 VTPHTLRHTFATHLLENGADLRIVQEILGHSDISTTQIYT 161 >gi|240139059|ref|YP_002963534.1| Tyrosine recombinase xerD [Methylobacterium extorquens AM1] gi|240009031|gb|ACS40257.1| Tyrosine recombinase xerD [Methylobacterium extorquens AM1] Length = 328 Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats. Identities = 44/273 (16%), Positives = 85/273 (31%), Gaps = 28/273 (10%) Query: 85 GSLAVNSRISFESYFDQIIRKSGD-----FDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139 A N+ ++ D + + + + + + +E R SSA + L+ Sbjct: 27 RGAAANTLAAYRRDLDDYLGYLAEGGIDPEEAQAEQVRAYIASLEPRGLKASSAARRLSC 86 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP------- 192 +R ++ + Y +P V P+R + + ++ + + E + Sbjct: 87 IRGFHRFLYAEGYSETDPTAPVAAPRRAKGLPKVLSVAEVDRLLATARERVEAAGDDRAE 146 Query: 193 -------RLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKL 244 E L +GLR S+ + + K G V L D + Sbjct: 147 ARAAARMLCLLELLYATGLRVSELVALPRSAAATRERYLVVKGKGGRERLVPLTDLAREA 206 Query: 245 LAM-----TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATI 296 + T G F ++ + F+ K A A + S H +R A+ Sbjct: 207 MRTHVAHLTAEGSWLFPAESESGHLTRQAFARDLKTAAAAADLRTDRVSPHVLRHAFASH 266 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRI 329 GA + G + + YT D Sbjct: 267 LLQNGADLRIVQELLGHADISTTQIYTHVLDER 299 >gi|251810683|ref|ZP_04825156.1| tyrosine recombinase XerC [Staphylococcus epidermidis BCM-HMP0060] gi|293366784|ref|ZP_06613460.1| tyrosine recombinase XerC [Staphylococcus epidermidis M23864:W2(grey)] gi|251805843|gb|EES58500.1| tyrosine recombinase XerC [Staphylococcus epidermidis BCM-HMP0060] gi|291319085|gb|EFE59455.1| tyrosine recombinase XerC [Staphylococcus epidermidis M23864:W2(grey)] Length = 286 Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats. Identities = 34/265 (12%), Positives = 94/265 (35%), Gaps = 20/265 (7%) Query: 85 GSLAVNSRISFESYFDQI-----IRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139 + + + S+ Q + ++ + + S + ++ + +++ Sbjct: 6 RNFSEYTLKSYHDDLVQFNNFLEREHLQLETFEYKDARNYLAFLYSNQLKRTTVSRKIST 65 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF----KSFWSEGSQPRLA 195 +R +++ + Q+ INP + + PK++ + + +E+M+ + +G + ++ Sbjct: 66 LRTFYEFWMTQDNSIINPFVQLVHPKKEKYLPQFFYEEEMEALFQTVEHDNKKGIRDKVI 125 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE--------LPDGFMKLLA 246 E L +G+R S+ ++ + N+ +K K + + + Sbjct: 126 IELLYATGIRVSELINIKLKDIDMNLPGVKVLGKGNKERFIPFGEFCRQSIERYLEEFQP 185 Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATK-AGV-NKSAHGVRKFSATISADAGATA 304 + +N + + AGV + H +R AT + GA Sbjct: 186 KQLANHDYLIVNMKGDPITERGVRYVLNDVVKRTAGVNDIHPHKLRHTFATHLLNQGADL 245 Query: 305 HELMATYGWKTVDQAETYTKGADRI 329 + + G + YT +++ Sbjct: 246 RTVQSLLGHVNLSTTGRYTHVSNQQ 270 >gi|162147966|ref|YP_001602427.1| putative tyrosine recombinase xerD [Gluconacetobacter diazotrophicus PAl 5] gi|209542583|ref|YP_002274812.1| integrase family protein [Gluconacetobacter diazotrophicus PAl 5] gi|161786543|emb|CAP56125.1| putative tyrosine recombinase xerD [Gluconacetobacter diazotrophicus PAl 5] gi|209530260|gb|ACI50197.1| integrase family protein [Gluconacetobacter diazotrophicus PAl 5] Length = 304 Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats. Identities = 49/287 (17%), Positives = 92/287 (32%), Gaps = 25/287 (8%) Query: 85 GSLAVNSRISFESYFDQII---RKSGDF--DYRKITTKHIRSGVESRKHTPSSAIQFLTS 139 A N+ ++ D R++G D + + +P + + L+ Sbjct: 16 RGAAANTLKAYGRDLDDFAAHARQAGRSLHDADSALLRDYMGSLARAGLSPRTQARRLSC 75 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ-------- 191 ++ + R+ NP ++ P+ R T++++ + Sbjct: 76 LKQFHLFLAREGVRQDNPAELLDTPRLPATLPRFLTEDEVDALLAACVPPPDGGAARRWL 135 Query: 192 -PRLAFEFLLYSGLRCSDSCRAGVQHL-QNNIFSIKTQKTGTIITVELPDGFMKLLAMT- 248 R A E L SGLR S+ + L ++ + K G V L Sbjct: 136 VARAALEMLYASGLRISELLALPRRGLGRDAQMLMVRGKGGRERLVPLSAAARAAAEALI 195 Query: 249 ----PIGKETFFI-NNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADA 300 P F + + F A +AG++ S H +R AT Sbjct: 196 AHDGPRRSPYLFPGRAPDRPLTRQGFDRILHDVALRAGLDPARLSPHVLRHSFATHMLAR 255 Query: 301 GATAHELMATYGWKTVDQAETYTKG-ADRIRLGIKNSRRISSVVDSD 346 GA L G + + YT A+R+R ++ ++ D + Sbjct: 256 GADLRALQVLLGHADIATTQIYTHVLAERLRQAVEAYHPLARGGDGE 302 >gi|41407506|ref|NP_960342.1| site-specific tyrosine recombinase XerD [Mycobacterium avium subsp. paratuberculosis K-10] gi|41395859|gb|AAS03725.1| hypothetical protein MAP_1408 [Mycobacterium avium subsp. paratuberculosis K-10] Length = 313 Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats. Identities = 43/274 (15%), Positives = 83/274 (30%), Gaps = 35/274 (12%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH----IRSGVESRKHTPSS-------- 132 +A N+ S+ + + D + V R+ P + Sbjct: 21 RGVAANTLSSYRRDLRRYTKHLSDRGISDLAKVGEDDVSEFLVALRRGDPDTGAAALSAV 80 Query: 133 -AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----- 186 A + L ++R L ++ + ++ +V P + T + + Sbjct: 81 SAARALIAVRGLHRFLAAEGLAELDVARAVRPPTPGRRLPKSLTIDQVLALLEAAGGESP 140 Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFM 242 + R E L +G R S++ V + + K G V + + Sbjct: 141 ADGPLTLRNRALLELLYSTGARISEAVGLDVDDVDTQARSVLLRGKGGKQRLVPIGRPAV 200 Query: 243 KLL-----------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGV 289 L A G F+N +++ + A +AG+ S H + Sbjct: 201 AALDAYLVRGRWELARRGRGTPAIFLNVRGGRLSRQSAWQVLQDAAERAGITSGVSPHML 260 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYT 323 R AT + GA + G +V + YT Sbjct: 261 RHSFATHLLEGGADVRVVQELLGHASVTTTQIYT 294 >gi|303247551|ref|ZP_07333822.1| integrase family protein [Desulfovibrio fructosovorans JJ] gi|302491031|gb|EFL50925.1| integrase family protein [Desulfovibrio fructosovorans JJ] Length = 413 Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats. Identities = 49/306 (16%), Positives = 100/306 (32%), Gaps = 22/306 (7%) Query: 52 TGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK-SGDFD 110 + + T ++ + N+ + + F + + GD Sbjct: 85 AREEAEAREKAVQEAEAVTFGFIFEGVYLEHARQNKKPNTVQTEQGLFRKWLGPVIGDVP 144 Query: 111 YRKITTKH---IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVA-INPCLSVERPKR 166 + I+ H IR + + + SA L +R +F +A + ++P V+ PK Sbjct: 145 LKDISPFHLERIRKNIAAAGLSARSAHYALCVVRQVFNFARDHDMTDCVSPTCKVKAPKT 204 Query: 167 KTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFL-LYSGLRCSDSCRAGVQHLQ--NNIFS 223 +R T E+ + ++ S A + L+ GLR + + + Sbjct: 205 DNRRLRFLTHEEADKLLEHVAKRSHELHAISLVSLHCGLRAGEIFNLTWSDVDFDRETLT 264 Query: 224 IKTQKTGTIITVELPDGFMKLLAMTPIGK--ETFFINNDKQKMNATQFSIWFKAKATKAG 281 ++ K G + +LA G + F + + S F+ G Sbjct: 265 LRDTKNGRTRIAYMTGQVRGMLAARVKGGPGDPVFPGRGGVRRSY--VSNAFERAVKDLG 322 Query: 282 VNKSA---------HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRL 331 N+ H +R A+ + G + + G +T+ E Y+ D +R Sbjct: 323 FNEGITDSRQKVVFHSLRHTFASWLVEQGTDLYSVKELMGHRTLSMTERYSHLSPDSLRR 382 Query: 332 GIKNSR 337 +K Sbjct: 383 AVKGLE 388 >gi|320321496|gb|EFW77605.1| hypothetical protein PsgB076_27145 [Pseudomonas syringae pv. glycinea str. B076] Length = 319 Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats. Identities = 56/294 (19%), Positives = 104/294 (35%), Gaps = 44/294 (14%) Query: 79 RKSAHWGSLA--------------VNSRISFESYFDQIIRKSGDF---DYRKITTKHI-- 119 SA + LA +R ++++ + G ++R +T H+ Sbjct: 15 LTSAEFQQLASVPAAVEWFANIDNPRTRRAYQNDLEDFCSFVGLTGADEFRAVTRAHVLA 74 Query: 120 -RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQE-YVAINPCLSVERPKRKT-EGIRPWTK 176 R+ +E+R ++ + L ++ LF + NP V+RPK +T EG P Sbjct: 75 WRAQLETRGLAGATIRRKLAALASLFDHLLENNAVAGGNPVHGVKRPKIETNEGKTPALG 134 Query: 177 ED-----MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKT 229 +D + + +G + R LLY GLR ++ R L + I ++ Sbjct: 135 DDQAKRLLDAPDTETVKGVRDRAILAVLLYHGLRREEAARLTTSDLVERRGIKHLRVHGK 194 Query: 230 GTII-TVELPD-------GFMKLLAMTPIGKETFFINNDKQ----KMNATQFSIWFKAKA 277 G I + L +++L + F + + + A A Sbjct: 195 GKKIRFLPLHPVAAERIYAYLELDSARDTSSGPLFRSVRGKTTGAGVTANGLYTVVAHWA 254 Query: 278 TKAGV---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 AG+ HG+R +AT + D A ++ G + Y + R Sbjct: 255 RVAGIEVDGLGVHGLRATAATNALDHDADIAKVQMWLGHANISTTRLYDRRGQR 308 >gi|307245328|ref|ZP_07527416.1| Predicted phage integrase family protein [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307254281|ref|ZP_07536121.1| Predicted phage integrase family protein [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307258741|ref|ZP_07540473.1| Predicted phage integrase family protein [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306853669|gb|EFM85886.1| Predicted phage integrase family protein [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306862760|gb|EFM94714.1| Predicted phage integrase family protein [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306867092|gb|EFM98948.1| Predicted phage integrase family protein [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 311 Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats. Identities = 53/252 (21%), Positives = 88/252 (34%), Gaps = 18/252 (7%) Query: 88 AVNSRISFESYFDQIIRKSGDFDYR--KITTKHIRSGVESRKHTPSSAIQFLTSMRVLFK 145 A N+R S + + GD + +I +HI+ ++ RK TP+ A + ++ Sbjct: 53 AKNTRQSNLQAIGWLCKFFGDPPIQLERIEPQHIKQYLQWRKDTPAVANIEVGLFNTIWN 112 Query: 146 WAVRQEYVA-INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGL 204 A Y +P V++ K I +++ F E E G Sbjct: 113 SAREWGYTTLSSPSQGVKKFPTKYREIYV-EDYILEKIYEFADERMAD--IIETAYLLGQ 169 Query: 205 RCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL-AMTPIGKETFFINNDKQK 263 R D C H+ N I I QKTG + E+ ++L G + F N +K Sbjct: 170 RPIDICNIHRSHIYNGILHITQQKTGKKVRFEISGRLKEILDRRLQDGSDFIFTNKWGRK 229 Query: 264 MNATQFSIWFKAKATKA---------GVNK-SAHGVRKFSATISADAGATAHELMATYGW 313 + FK KA + K +R +AT + AT + G Sbjct: 230 LERRILGNHFKEIREKAMNAYPELADEIGKVQMRDMRAKAATDISLT-ATDEQAQKQLGH 288 Query: 314 KTVDQAETYTKG 325 + + Y + Sbjct: 289 TSKRMTQHYIRK 300 >gi|312135654|ref|YP_004002992.1| integrase family protein [Caldicellulosiruptor owensensis OL] gi|311775705|gb|ADQ05192.1| integrase family protein [Caldicellulosiruptor owensensis OL] Length = 310 Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats. Identities = 40/279 (14%), Positives = 89/279 (31%), Gaps = 20/279 (7%) Query: 64 PRKKPTTLKW--LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121 P++ L W + ++ + + +E + + + + + K Sbjct: 2 PKRSIVKLDWQEALQQFLFFKRAVGRSELTLRDYEYHITHFFKLYPNCFHDEQQLKKCLL 61 Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM-Q 180 S+ P++ LT ++ FKW V + + NP + PK+K EG ++ + Sbjct: 62 EYLSQPVKPATYNLRLTYLKAFFKWCVEENILKSNPLEGL--PKKKAEGRIVNIDTEILE 119 Query: 181 QFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI----KTQKTGTI 232 + + G + L +G+R ++ ++H + KT Sbjct: 120 KLLKLPDKNTFCGLRDYALILLTLDTGIRPKEAFSLLIEHFDFKTLQVFIPSDAAKTRVS 179 Query: 233 ITVELPDGFMKLLAMTPI-------GKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS 285 + + + K F + + + + + K GV Sbjct: 180 RVLPILPVTANAVKKLIAVRHPEWDDKVPVFCTVTGRPLTRDIWHDRMEMYSKKLGVKIR 239 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 + +R A + G L T G T++ + Y Sbjct: 240 PYDLRHTFALLYLKNGGYELSLQKTLGHTTLEMTKRYVH 278 >gi|301299347|ref|ZP_07205632.1| tyrosine recombinase XerC [Lactobacillus salivarius ACS-116-V-Col5a] gi|300853087|gb|EFK80686.1| tyrosine recombinase XerC [Lactobacillus salivarius ACS-116-V-Col5a] Length = 298 Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats. Identities = 40/266 (15%), Positives = 90/266 (33%), Gaps = 27/266 (10%) Query: 85 GSLAVNSRISF----ESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT--PSSAIQFLT 138 + + ++ + + D I G +++I + + + + +S + ++ Sbjct: 17 KQYSDETLKAYSEDLQHFVDFIDETGGAKSFKEIGSNDVHAYMSYLYDRYEMTSISRMIS 76 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRL 194 S+R + + ++ E NP V+ + R + +++M + + R Sbjct: 77 SLRAFYNFLIKNELTDENPFAYVQLKRHPRSLPRFFYEKEMTALFEATEGDTQMLIRDRA 136 Query: 195 AFEFLLYSGLRCSDS--CRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM----- 247 E L +G+R S+ + G L N + K V + L Sbjct: 137 LLESLYGTGMRVSECTGLKMGNVDLTNKKMLLH-GKGDKDRLVPFGSYCQEALQRYFEQT 195 Query: 248 -TP------IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISA 298 TP + F+N+ + + K ++ ++ S H +R AT Sbjct: 196 RTPLMEKYHRDHDLVFVNHYGNPLTPAGVAYILKQIVKRSSLHTSIHPHELRHTFATHLM 255 Query: 299 DAGATAHELMATYGWKTVDQAETYTK 324 GA + G ++ + YT Sbjct: 256 SNGADLRAVQELLGHSSLSTTQIYTH 281 >gi|116255003|ref|YP_770838.1| putative integrase/recombinase [Rhizobium leguminosarum bv. viciae 3841] gi|115259651|emb|CAK11632.1| putative integrase/recombinase [Rhizobium leguminosarum bv. viciae 3841] Length = 288 Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats. Identities = 36/253 (14%), Positives = 91/253 (35%), Gaps = 15/253 (5%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRK--ITTKHIRSGVESRKHTPSSAIQFLTSMRV 142 +L+ ++ S+ + R G R + + + S + + Q + ++R Sbjct: 20 RNLSPATQRSYLHAVTKFSRYFGRSPDRLGLEDVRAFQVHLVSSGLSWPALNQTVCALRF 79 Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS 202 F + + + + + +++ +F + R A + Sbjct: 80 FFGVTLGHGEIP----ERIAYARTPAKLPTILNGDEIVRFLEAVPS-LRTRTALTTAYAA 134 Query: 203 GLRCSDSCRAGVQHLQNNIFSIKTQ--KTGTIITVELPDGFMKLLAM-TPIGKETFFI-- 257 GLR S++ V+ + I+ + K G V L + +L + + + ++ Sbjct: 135 GLRASEAVHLKVRDIDGERGIIRVEHGKGGKDRNVMLSAQLLAILRVYWRLARPEVWLFP 194 Query: 258 -NNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWK 314 ++ + ++ ++ T AG++K + H +R AT ++G + G Sbjct: 195 GRDETKPIDVQVLYSACRSACTAAGIDKRVTVHTLRHSFATHLLESGTDIRIIQVLLGHN 254 Query: 315 TVDQAETYTKGAD 327 + YTK ++ Sbjct: 255 NLSTTARYTKVSN 267 >gi|56964041|ref|YP_175772.1| site-specific tyrosine recombinase [Bacillus clausii KSM-K16] gi|56910284|dbj|BAD64811.1| site-specific tyrosine recombinase [Bacillus clausii KSM-K16] Length = 300 Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats. Identities = 42/242 (17%), Positives = 90/242 (37%), Gaps = 21/242 (8%) Query: 109 FDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168 D + + S + +K+ S + L+++R K+ + + +++ NP L PK+KT Sbjct: 50 KDVKHQDVRLFISELVDKKYARKSIARKLSALRSFGKFLMEEGHISENPFLHTHLPKQKT 109 Query: 169 EGIRPWTKEDMQ----QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224 +E+M+ + + + E L +G+R S+ + ++ Sbjct: 110 RLPTFLYEEEMEHWLLALPANKPLEKRDKAIIELLYATGMRVSECSMLALDQWDRVSETV 169 Query: 225 KTQKTG-------------TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI 271 + G + + + + KLL F+N ++ Sbjct: 170 RVFGKGRKERYVPVGKMAVSAVESYIHEARPKLLRANDP-TSHLFLNYRGGALSDRSIRK 228 Query: 272 WFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 + + +A + K S H +R AT +AGA + G +++ + YT + Sbjct: 229 IVEKRLDEAAMQKKISPHAIRHSFATHLLNAGADLRAVQELLGHQSLKTTQVYTH-VSKE 287 Query: 330 RL 331 RL Sbjct: 288 RL 289 >gi|50123203|ref|YP_052370.1| site-specific tyrosine recombinase XerC [Pectobacterium atrosepticum SCRI1043] gi|50123212|ref|YP_052379.1| site-specific tyrosine recombinase XerC [Pectobacterium atrosepticum SCRI1043] gi|49613729|emb|CAG77180.1| probable integrase/recombinase [Pectobacterium atrosepticum SCRI1043] gi|49613738|emb|CAG77189.1| probable integrase/recombinase [Pectobacterium atrosepticum SCRI1043] Length = 350 Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats. Identities = 53/308 (17%), Positives = 108/308 (35%), Gaps = 32/308 (10%) Query: 51 LTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISF-ESYFD--QIIRKSG 107 +T TP ++ TL+ Y + + ++ S+ E G Sbjct: 1 MTRPTPPSPEALYLSRQTQTLRQHTEHYLEHLSAAGYSARTQESYWERLLPFVAWCEDRG 60 Query: 108 DFDYRKITTKHI----RSGVESRKH-----TPSSAIQFLTSMRVLFKWAVRQEYVAINPC 158 +++ + R RK T S + LT +R+L++W +++ + NP Sbjct: 61 LLHAPQVSLAVLEGYQRWLRGYRKADGHPLTAGSQLNRLTGIRMLWRWLLKRHVILYNPA 120 Query: 159 LSVERPKRKTEGI-RPWTKED----MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAG 213 + PK + + + E+ +Q +S G + R+ E L SG+R +++ Sbjct: 121 EMLTLPKEEKRLPAQVLSVEETGGVLQAMESGTVLGLRNRVILEVLWSSGVRRAEAVSLM 180 Query: 214 VQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLA----------MTPIGKETFFINNDK 261 + + + ++ K V L + K LA FI+++ Sbjct: 181 LSDIDLSRGVMMVRQGKGNKDRVVPLGERACKWLARYLNHARPALARRYDSGHLFISHNG 240 Query: 262 QKMNATQFSIWFKAKATKAG---VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318 + + + G + H R AT + GA + A G + ++ Sbjct: 241 TGLARVTLTKMAGKAIRETGHLDKPGACHVFRHSMATQMLENGADTRHIQAILGHEKLET 300 Query: 319 AETYTKGA 326 + YT+ A Sbjct: 301 TQIYTRVA 308 >gi|322381501|ref|ZP_08055481.1| site-specific tyrosine recombinase XerC-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321154543|gb|EFX46839.1| site-specific tyrosine recombinase XerC-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 314 Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats. Identities = 42/261 (16%), Positives = 86/261 (32%), Gaps = 22/261 (8%) Query: 86 SLAVNSRISFESYFDQIIRKSGDFDYRKIT-------------TKHIRSGVESRKHTPSS 132 L + + S I +Y++ T++ + + + P++ Sbjct: 40 DLNPKTLKEYASDLKHFIGWFETANYQEENIVFRIEDVATPTLTRYQEASQKVMELKPAT 99 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG--S 190 + L +++ F+WA + +P V+ + R T ++ + G Sbjct: 100 INRRLITLKRFFEWAASNSIIRRDPSKPVKLVPEEKVSPRQMTDKEEDALIAAAEHGGSL 159 Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP----DGFMKLLA 246 + + +L++GLR + C +Q ++++ K V L K L Sbjct: 160 RDQTILIVMLHTGLRTMEVCDLAPGDIQIGKLTVRSGKRNKQREVPLNATCRSALEKYLV 219 Query: 247 MTPIGKETFFIN-NDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATA 304 P G F + +++ + KA + SAH +R + A Sbjct: 220 YLPPGSPYLFPSEKTGDRLSERALRHLIQKYMKKARLKGLSAHDLRHRFGYVMAVN-TPL 278 Query: 305 HELMATYGWKTVDQAETYTKG 325 H L G + D Y K Sbjct: 279 HRLAQIMGHDSPDTMMIYVKA 299 >gi|240145649|ref|ZP_04744250.1| integrase/recombinase XerD [Roseburia intestinalis L1-82] gi|257202271|gb|EEV00556.1| integrase/recombinase XerD [Roseburia intestinalis L1-82] Length = 218 Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats. Identities = 36/208 (17%), Positives = 69/208 (33%), Gaps = 17/208 (8%) Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----QQFKSFWSEGSQPRLA 195 M+ F + ++ + +P ++ PK + R T E++ +Q + + + Sbjct: 1 MKAFFHFLEKERRIESDPAWRLKAPKIEKTMPRILTTEEVTFLLEQPSGNTPKELRDKAM 60 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM-------- 247 E L +G+R S+ V L + + + + + L Sbjct: 61 LELLYATGIRVSELISLKVSDLNLQMEYVICTDIHKERIIPFGNVAREALTRYMQDGRDH 120 Query: 248 --TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGAT 303 + F N M+ F K KAG+ + H +R A GA Sbjct: 121 LISQADCPWLFTNCTGGAMSRQGFWKLIKFYGKKAGIESEITPHTLRHSFAAHLISNGAD 180 Query: 304 AHELMATYGWKTVDQAETYTK-GADRIR 330 + G + + Y++ G RIR Sbjct: 181 LKSVQEMLGHSDISTTQIYSQMGQGRIR 208 >gi|28493064|ref|NP_787225.1| integrase/recombinase [Tropheryma whipplei str. Twist] gi|28476104|gb|AAO44194.1| integrase/recombinase [Tropheryma whipplei str. Twist] Length = 349 Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats. Identities = 43/299 (14%), Positives = 93/299 (31%), Gaps = 61/299 (20%) Query: 86 SLAVNSRISFES----YFDQIIRKSGDFDYRKITTKHIRSGVE-SRKHTPSSA-IQFLTS 139 L+ + ++ + Y + + G ++ + I +E ++HT S + + Sbjct: 34 GLSDATLQTYRNSLGIYLSWLGEQ-GTQRLSEVNSNAIERFLEYRQRHTRKSTLANTVAA 92 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS------QPR 193 +R + V + +NP +++PK P + +++ + R Sbjct: 93 LRTFHRHLVLEGRQTLNPTEKLQQPKVPKTLPHPLSLDEIINLLKAADTNQAREISLRDR 152 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHL---QNNIFSIKTQKTGTIITVE-------------- 236 E L +G R S++ V N+ + + + + Sbjct: 153 ALIEVLYGTGARISEAVSLNVNAFAESDQNLLRLTGKGNKQRMVLFGSYARNAVDNYLQH 212 Query: 237 -----------------------------LPDGFMKLLAMTPIGKETFFINNDKQKMNAT 267 + D +L T G F++N +++ Sbjct: 213 SRPKLLARSHVYRNITDASTLKYRPTSSTIGDAEDGVLTATAAGVPWLFLSNRGKRLTRQ 272 Query: 268 QFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 Q + A + + S H +R AT AGA + G +++ YTK Sbjct: 273 QAGNIIRKLGEAAEIGRYISPHSLRHSFATHMLQAGADIRTVQELLGHSSINTTSVYTK 331 >gi|312792356|ref|YP_004025279.1| integrase family protein [Caldicellulosiruptor kristjanssonii 177R1B] gi|312179496|gb|ADQ39666.1| integrase family protein [Caldicellulosiruptor kristjanssonii 177R1B] Length = 314 Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats. Identities = 39/279 (13%), Positives = 89/279 (31%), Gaps = 20/279 (7%) Query: 64 PRKKPTTLKW--LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121 P++ L W + ++ + + ++ + + + + K Sbjct: 2 PKRSIVKLDWQEAMQQFLFYKRAEGRSERTLSDYKYHITHFFDIYPNCFHDEQQLKKCLY 61 Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM-Q 180 S+ P++ LT ++ FKW V + + NP + PK+K EG ++ + Sbjct: 62 EYLSQPIKPATYNLRLTYLKAFFKWCVEENILKSNPLEGL--PKKKAEGRIVNIDTEILE 119 Query: 181 QFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI----KTQKTGTI 232 + + G + L +G+R ++ ++H + KT Sbjct: 120 KLLKLPDKNTFCGLRDYALILLTLDTGIRPKEAFSLLIEHFDFKTLQVFIPSNAAKTRVS 179 Query: 233 ITVELPDGFMKLLAMTPI-------GKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS 285 + + + K F + + + + + + K GV Sbjct: 180 RVLPILPVTANAVKKLIAVRHPEWDEKVPVFCTVTGRPLTSDIWHGRIEMYSKKLGVKIR 239 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 + +R A + G L T G T++ + Y Sbjct: 240 PYDLRHTFALLYLKNGGFELSLQKTLGHTTLEMTKRYVH 278 >gi|90422292|ref|YP_530662.1| phage integrase [Rhodopseudomonas palustris BisB18] gi|90104306|gb|ABD86343.1| phage integrase [Rhodopseudomonas palustris BisB18] Length = 304 Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats. Identities = 46/272 (16%), Positives = 104/272 (38%), Gaps = 28/272 (10%) Query: 85 GSLAVNSRISFESYFDQIIRKS-GDFDYRKITTKHIRSGVE----SRKHTPSSAIQFLTS 139 L+ N+ ++ G + +TT+H+R +E +RK +PS+ + + Sbjct: 18 RQLSANTLQAYGYDLADFCAWLKGQGEAPAVTTEHLRDYLESMMVARKLSPSTVRRRIAC 77 Query: 140 MRVLFKWAVRQEYVAINPCLSVE-RPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR----- 193 +R F++ + + +P + R+ R ++E+ Q + R Sbjct: 78 LRAFFRFLDDRGEMP-DPFTGWRLKLPRRKRLPRALSREEANQLLTSARAPGAARQSLPA 136 Query: 194 -----LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV------ELPDGFM 242 + ++ +G+R + C+ + ++ S++ G+ V L + Sbjct: 137 STPLCVEIRLMISTGIRVGELCKIATGDVSSDGASLRIHGKGSRDRVVYVSNPALRNELR 196 Query: 243 KL---LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS 297 KL G F+N + + + F + A +AG+ + + H +R +AT+ Sbjct: 197 KLTTLRQRLSAGDGPLFVNRNGENLRPYSFRTKLRNFAGQAGLRRRVTPHMLRHTAATLL 256 Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRI 329 ++G + G ++ E YT +D Sbjct: 257 IESGVDIRIVQRLLGHSSIATTEIYTHVSDEA 288 >gi|319639109|ref|ZP_07993866.1| tyrosine recombinase xerC [Neisseria mucosa C102] gi|317399687|gb|EFV80351.1| tyrosine recombinase xerC [Neisseria mucosa C102] Length = 298 Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats. Identities = 44/267 (16%), Positives = 93/267 (34%), Gaps = 17/267 (6%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH----IRSGVESRKHTP 130 + Y K+ + ++ ++ +++R D + T+ + + + Sbjct: 11 LERYLKTLSQQGKSQHTVSAYRRDLSELMRLLPDNLENGLPTRRDFVAALKKLSQKGLSE 70 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 SS + L++ R W V+ E + +P +++ P+ + +E + Sbjct: 71 SSLARKLSAWRQYCSWLVQIEVMESDPTFNMKAPRLPERLPKALPQEPLNHILDHAPVDD 130 Query: 191 ----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVEL----PDGF 241 + + FE + SGLR S+ + + + + K G V L Sbjct: 131 ELDVRDKAMFELMYGSGLRLSEIQGLNLNSIVLDEGWVSVNGKGGKQRQVPLVAKSIAAL 190 Query: 242 MKLL--AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG--VNKSAHGVRKFSATIS 297 L + G++ F N + ++ Q +A A + G + S H +R AT Sbjct: 191 RDYLAVRIAKEGEQALFTNKNGGRLGQRQIQKRLQAWAVRVGSASHISPHMMRHSYATHL 250 Query: 298 ADAGATAHELMATYGWKTVDQAETYTK 324 A + G + + YTK Sbjct: 251 LQASGDIRAVQELLGHSNLSATQVYTK 277 >gi|253991592|ref|YP_003042948.1| site-specific tyrosine recombinase XerC [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|211638470|emb|CAR67092.1| tyrosine recombinase xerc [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253783042|emb|CAQ86207.1| tyrosine recombinase xerc [Photorhabdus asymbiotica] Length = 303 Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats. Identities = 47/272 (17%), Positives = 97/272 (35%), Gaps = 24/272 (8%) Query: 75 ISEYRKSAH-WGSLAVNSRISFESYFDQIIR--------KSGDFDYRKITTKHIRSGVES 125 I + + L+ + I++ + + + D D K+ IRS Sbjct: 12 IEAFLRYLRVERRLSPVTIINYRRHLSALAEMVLAIDVRQWEDLDPAKVRMLVIRSRRAG 71 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + ++ L+S+R W V Q +A+NP +V P K + +++ Q + Sbjct: 72 LQS--ANLSLRLSSLRSFLDWQVTQGVMAVNPGKAVSTPGTKRHLPKNIDVDEVNQLLNI 129 Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT--------IIT 234 + R E + +GLR S+ +HL + G+ Sbjct: 130 NFNEPLSVRDRTMLEVMYGAGLRLSELVGLDCRHLDLESGEVWVSGKGSKERKVPLGQTA 189 Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKF 292 VE + ++++ + G FI+N ++++ F + G+N H +R Sbjct: 190 VEWLNRWLEMRELFKPGDNAVFISNRGRRISTRNVQQRFAQWGIRQGINSHIHPHKLRHS 249 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTK 324 AT ++ + G ++ + YT Sbjct: 250 FATHILESSGDLRAVQELLGHASLSTTQVYTH 281 >gi|295690851|ref|YP_003594544.1| integrase family protein [Caulobacter segnis ATCC 21756] gi|295432754|gb|ADG11926.1| integrase family protein [Caulobacter segnis ATCC 21756] Length = 313 Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats. Identities = 43/273 (15%), Positives = 93/273 (34%), Gaps = 31/273 (11%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDF-----DYRKITTKHIRSGVESRKHTPSSAIQFLTS 139 + A N+ ++ + G D + + +R +P++A + ++ Sbjct: 20 RAAARNTLTAYGKDLEDARGFLGRSKRDLDDADAEAVEAYFQDLGARGLSPATAARRRSA 79 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----------G 189 +R +++ + + + +P V PK + + ++++ + + G Sbjct: 80 VRQFYRFVLGEGWRTDDPSRRVAAPKAGRPLPKVLERAEIERLLAAATAPNTEMGDSAQG 139 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHL-QNNIFSIKTQKTGTIITVELPDGFMKLLAMT 248 + E + SGLR S+ + L ++ + I K G L D + Sbjct: 140 LRLACIIELIYASGLRISELLALPLTALARDPAYLIVKGKGGKERLAPLNDAARAAVNAY 199 Query: 249 PIGKETFFI------------NNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKFS 293 G+ TF ++ A + A AG+++ S H +R Sbjct: 200 LAGRRTFLPKGAKESPWLFPSRGGSGRLTARRVGQLLDDAAIAAGIDRDKVSPHVLRHAF 259 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGA 326 AT + GA + G + + YT A Sbjct: 260 ATHLLEGGADLRVIQTLLGHADIATTQIYTHVA 292 >gi|219558655|ref|ZP_03537731.1| integrase [Mycobacterium tuberculosis T17] gi|260187668|ref|ZP_05765142.1| integrase [Mycobacterium tuberculosis CPHL_A] gi|260201779|ref|ZP_05769270.1| integrase [Mycobacterium tuberculosis T46] gi|289444189|ref|ZP_06433933.1| integrase [Mycobacterium tuberculosis T46] gi|289448303|ref|ZP_06438047.1| integrase [Mycobacterium tuberculosis CPHL_A] gi|289570821|ref|ZP_06451048.1| integrase [Mycobacterium tuberculosis T17] gi|289417108|gb|EFD14348.1| integrase [Mycobacterium tuberculosis T46] gi|289421261|gb|EFD18462.1| integrase [Mycobacterium tuberculosis CPHL_A] gi|289544575|gb|EFD48223.1| integrase [Mycobacterium tuberculosis T17] Length = 332 Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats. Identities = 47/285 (16%), Positives = 96/285 (33%), Gaps = 10/285 (3%) Query: 44 IPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII 103 + A+++A S K P + + I +Y + + + ++ Sbjct: 46 VEAFLAA-AKSQNKPPGPPPSLHAPPSWRRDIDDYLLNLNAAGQRPATIRLRKTVLCAAA 104 Query: 104 RKSGDFDYRKITTKHIRSGVESRKH-TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE 162 G +T +H+ + ++H +P + +++R F WA + V S+ Sbjct: 105 HGLG-RPPADVTAEHLLDWLGKQQHLSPEGRKTYRSTLRGFFVWAYEMDRVRDYVADSLP 163 Query: 163 RPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222 + + + RP + Q + ++ L +GLR +++ +A L + Sbjct: 164 KVRCPKQPPRPAGDDVWQAALAKADRRTE--LMIRLAGEAGLRRAEAAQAHTGDLMDGGL 221 Query: 223 SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282 + K G V + D L+ TP G F N + A Sbjct: 222 LLVHGKGGKRRIVPISDYLAALIRDTPHG--YLFPNGTGGHLTAEHVGKLVSRALPG--- 276 Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 + + H +R AT + + G ++ E YT D Sbjct: 277 DATMHTLRHRYATRAYRGSHNLRAVQQLLGHASIVTTERYTALCD 321 >gi|48428759|gb|AAT42408.1| site-specific recombinase XerC [Collimonas fungivorans Ter331] Length = 324 Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats. Identities = 56/304 (18%), Positives = 98/304 (32%), Gaps = 43/304 (14%) Query: 72 KWLISEYRKS-AHWGSLAVNSRISFESYFDQII---RKSGD----FDYRKITTKHIRSGV 123 + +S Y S A L+ ++ ++ ++ + GD + + + Sbjct: 7 QAYLSGYLDSLAGQRQLSAHTISNYGRDLKELASLTQALGDNWQFAAITHFHIRKFAAQL 66 Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 SR PSS + L++ R F+W Q +A NP V+ PKR + +D Sbjct: 67 HSRGLNPSSIARKLSAWRGFFEWLAEQTTLASNPVEGVKAPKRTKPLPKAMAADDAIHLV 126 Query: 184 S----FWSEGSQPRL----AFEFLLYSGLRCSDSCRA------GVQHLQNNIFSI----- 224 + GS L FE L SGLR S+ H + Sbjct: 127 ASGNPLADAGSSMALCNQAMFELLYSSGLRVSELAGLDLHYSRQPDHESAGWIDLDAAEV 186 Query: 225 -KTQKTGTIITVELPDGFMKLLAMTPIGK------------ETFFINNDKQKMNATQFSI 271 T K G +V + ++ +A + F+ +++ + Sbjct: 187 TVTGKGGKKRSVPVGKPAIQAIAAWLPQRAALLKSDQGEHAAALFLTERGTRVSPRVVQL 246 Query: 272 WFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 K A G+ N H +R A+ + G ++ + YT D Sbjct: 247 RLKHHAQSLGIASNVHPHVLRHSFASHMLQGSGDLRAVQELLGHASIAATQVYT-SLDFQ 305 Query: 330 RLGI 333 RL Sbjct: 306 RLAQ 309 >gi|271964493|ref|YP_003338689.1| tyrosine recombinase XerD [Streptosporangium roseum DSM 43021] gi|270507668|gb|ACZ85946.1| tyrosine recombinase XerD [Streptosporangium roseum DSM 43021] Length = 308 Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats. Identities = 51/297 (17%), Positives = 104/297 (35%), Gaps = 33/297 (11%) Query: 73 WLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKH 128 ++S Y LA N+ S+ + + G + +I + + + + + Sbjct: 6 AVLSSYLAHLALERGLAANTLASYRRDLLRYVEHLKSRGRVTFGEIAEGDVTAFLAALRA 65 Query: 129 T--------PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 SSA + ++++R L ++A+R+ +P V P++ + + D++ Sbjct: 66 GDEEHQALVASSAARAVSAVRGLHRFALREGVSDHDPAHGVRPPRQLRRLPKAISVNDVE 125 Query: 181 QFKSF-----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ---KTGTI 232 + + + R E L +G R S++ V + + + + K G Sbjct: 126 RLIAASGPEGAPLTMRNRALLELLYGTGARISEAVGLAVDDVDLGSDTQQVRLRGKGGRT 185 Query: 233 ITVELPDGFMKLL-----------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281 V L + L A G F+N ++ +A A + G Sbjct: 186 RLVPLGRFAREALGAYLARARPGIAAHGRGTSGLFLNARGGRLTRQGAWEVLQAAAERGG 245 Query: 282 VNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT-KGADRIRLGIKNS 336 + S H +R AT D G + G +V + YT D++R + Sbjct: 246 LAGISPHILRHSFATHLLDGGVDVRVVQELLGHASVTTTQVYTLVTVDKLREAYAAA 302 >gi|254167351|ref|ZP_04874203.1| site-specific recombinase, phage integrase family protein [Aciduliprofundum boonei T469] gi|197623614|gb|EDY36177.1| site-specific recombinase, phage integrase family protein [Aciduliprofundum boonei T469] Length = 279 Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats. Identities = 45/265 (16%), Positives = 95/265 (35%), Gaps = 19/265 (7%) Query: 75 ISEYRKSAHWGSLAVNSRISF----ESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130 + ++++ + N+ + +++ D + + RK++ Sbjct: 8 LEKFKEYLRGEKRSENTIKEYAHFISDMLRYFKKRAEDITPGDLNKYKMYLST-KRKYSK 66 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 +S ++R FK+ ++ ++ PKR + + +++++++ SE Sbjct: 67 NSLYLATKAIRSYFKY------KNLDTAKNLSSPKRPKQMPKYLSEDEVKRLIEASSENP 120 Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPD----GFMKL 244 + L YSGLR S+ C ++ + I +++ K V + Sbjct: 121 RDYAIISLLAYSGLRVSELCNLKIEDVDFNERIVYVRSGKGDKDRIVVVSPRVIEALQNY 180 Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302 L E F + K++ Q K A KAG+ K + H +R AT G Sbjct: 181 LYTREDDMEYLFASQKSNKISRVQVFRIVKKYAEKAGIKKEVTPHVLRHTLATTLLRRGV 240 Query: 303 TAHELMATYGWKTVDQAETYTKGAD 327 + G +V + YT D Sbjct: 241 DIRFIQQFLGHSSVATTQIYTHVDD 265 >gi|116492727|ref|YP_804462.1| tyrosine recombinase XerC subunit [Pediococcus pentosaceus ATCC 25745] gi|122265809|sp|Q03FK2|XERC_PEDPA RecName: Full=Tyrosine recombinase xerC gi|116102877|gb|ABJ68020.1| tyrosine recombinase XerC subunit [Pediococcus pentosaceus ATCC 25745] Length = 301 Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats. Identities = 44/299 (14%), Positives = 98/299 (32%), Gaps = 30/299 (10%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIR---KSGDFD----YRKITTKHIRSGVESR 126 L +Y + + ++ D + +GD + S + R Sbjct: 6 LFKQYLTVER--QYSEKTVTAYLEDIDAFQKFLTDTGDKTDLLLVDRFDVNVYMSYLFDR 63 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ-FKSF 185 +S + ++++R +++ V+ + V NP V+ K+ + + +++M F++ Sbjct: 64 HLARTSISRKVSALRSFYRFLVKNDLVDKNPFELVQLKKQSDKLPHFFYEKEMNMLFEAV 123 Query: 186 WSEGSQPRL----AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG 240 + +L E L +G+R S+ + ++ +I K V Sbjct: 124 YQAEGAQKLRNIAILEVLYGTGMRVSECAALQWSDIDFSMQTILVLGKGNKERYVPFGRY 183 Query: 241 FMKLLA------------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--A 286 + L FIN+ + + T T + +N Sbjct: 184 AKEALQNYRKNEWEPFLSKYKQTHNFVFINHYAKPITTTGIEYILNQVITASSLNGKIHP 243 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDS 345 H +R AT + GA + G ++ + YT + +L + D+ Sbjct: 244 HMLRHSFATALLNNGADLRTVQELLGHSSLSTTQIYTH-VTKEKLQESYRKYFPRSTDA 301 >gi|288799833|ref|ZP_06405292.1| tyrosine type site-specific recombinase [Prevotella sp. oral taxon 299 str. F0039] gi|288333081|gb|EFC71560.1| tyrosine type site-specific recombinase [Prevotella sp. oral taxon 299 str. F0039] Length = 362 Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats. Identities = 53/265 (20%), Positives = 101/265 (38%), Gaps = 22/265 (8%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130 L ++ Y K L+ + E +FD + + +S ++ Sbjct: 104 LSKILRVYLKDKD-IELSKITPKWVERFFDFLEHEF-------------KSFIKKTPLKA 149 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-WSEG 189 SSA + AV+ + + NPC V K + T+E++++ S + G Sbjct: 150 SSARLLGNRLSGALAEAVKMDIIKDNPCQKVRAIKAQESQRTYLTQEELKRLASTPYERG 209 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN--IFSIKTQKTGTIITVELPDGFMKLLAM 247 + AF F +GLR SD + + + + +KT + ++L +G K+L Sbjct: 210 ERVTKAFLFSCLTGLRFSDVSKLRWAEVSEDFKRITFVQKKTSGLEYLDLSEGATKILKE 269 Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAH 305 F + ++ NA + ++ +AG+NK S H R AT+ + Sbjct: 270 RKNNGGLVFYDLPRESGNAGKLLNSWR---VRAGINKKISFHTARHTFATMLLTLDVDLY 326 Query: 306 ELMATYGWKTVDQAETYTKGADRIR 330 + G K + + Y K D+ + Sbjct: 327 TVSKLLGHKDIKTTQIYAKIIDKKK 351 >gi|28871096|ref|NP_793715.1| site-specific recombinase, phage integrase family [Pseudomonas syringae pv. tomato str. DC3000] gi|28854346|gb|AAO57410.1| site-specific recombinase, phage integrase family [Pseudomonas syringae pv. tomato str. DC3000] Length = 347 Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats. Identities = 53/325 (16%), Positives = 111/325 (34%), Gaps = 18/325 (5%) Query: 9 PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68 PF+ R R+ + + + + L G + +++ + Sbjct: 21 PFMAYYEKRGDAWRAQIRRKGYPTLSATF-DTKAEAQRWAAELEGDMSRARFVDVREAEA 79 Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR-K 127 T+L + Y + ++ + K + + + S ++ K Sbjct: 80 TSLATALERY--ESEVTESKKGAKQERVRIKKWMESKFAGKSLASLRSSDMASYRDAEIK 137 Query: 128 HTPSSAIQFL--TSMRVLFKWAVRQEYVA--INPCLSVERPKRKTEGIRPWTKEDMQQFK 183 S+A L + L+ A + + NPC ++ PK + R T ++++ Sbjct: 138 AGRSTATVRLDLAVISHLYTVATKDWGIEGLTNPCRALRMPKGSKQRERRPTADELKSLY 197 Query: 184 SFWSEGSQPR-LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242 E S + E + + +R S+ +Q + ++ K G +V L Sbjct: 198 KAAGEISPELPVIIELAVETAMRRSELVTLRKDQIQGKVAFLEDTKNGERRSVPLSSRAR 257 Query: 243 KLLAM--TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISAD 299 +L+ PI F ++ A S +F KA + H +R + + + Sbjct: 258 ELIEGVPAPIKGGPLF------RLKADTVSNYFPLACEKANIQGLRLHDLRHEATSRLFE 311 Query: 300 AGATAHELMATYGWKTVDQAETYTK 324 G T E+ + G KT+ + YT Sbjct: 312 RGFTMMEVASITGHKTLAMLKRYTH 336 >gi|219669469|ref|YP_002459904.1| tyrosine recombinase XerD [Desulfitobacterium hafniense DCB-2] gi|219539729|gb|ACL21468.1| tyrosine recombinase XerD [Desulfitobacterium hafniense DCB-2] Length = 322 Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats. Identities = 47/294 (15%), Positives = 90/294 (30%), Gaps = 45/294 (15%) Query: 85 GSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESRKHTPSSAI---QFLTS 139 L+ N+R S+E + + + + K+ SA ++L + Sbjct: 20 RGLSPNTRNSYERDLRKFTAFLQQRGKNIIACEGNDLFLFLLQEKNQGRSARTLARYLAT 79 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK----SFWSEGSQP--- 192 +R F + + +E +P + PK + ++ + + EG +P Sbjct: 80 LRGFFAFLLGEEMREDDPTEYLSTPKLEQHLPHVLSEGSISKLMGEGGDRDKEGPKPGKS 139 Query: 193 --------------------RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-T 231 E L GLR S+ V + +++ + G Sbjct: 140 SKKAGDSDSEGKDKGLLMRNMAMIEVLYGCGLRVSELVGLKVSDIIFETRTLRCRGKGNK 199 Query: 232 IITVELPDGFMKLLA----------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281 V + + +++L E F+N+ + K A G Sbjct: 200 ERIVPIGEYALEVLQNYLEHDRERLRGKHKTEVLFLNSRGTALTRQGIWDILKKWAQTHG 259 Query: 282 V--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 V N H R AT D GA + G + + YT + + L + Sbjct: 260 VQENIYPHKFRHSFATHLLDHGADLRSVQEMLGHADIATTQIYTHLSRQRLLEV 313 >gi|257125886|ref|YP_003164000.1| integrase family protein [Leptotrichia buccalis C-1013-b] gi|257049825|gb|ACV39009.1| integrase family protein [Leptotrichia buccalis C-1013-b] Length = 356 Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats. Identities = 45/276 (16%), Positives = 95/276 (34%), Gaps = 25/276 (9%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH----- 128 + EY K ++ + + + SF +Y + R + + +++++S +K Sbjct: 62 YLDEYEKIHNFEEIEMMTFRSFIAYLNSPKRLMENDKNKTENSENLKSIKNLKKCKKKAK 121 Query: 129 ----TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 + S + ++++R FK+ + N + PK + E ++D+ + + Sbjct: 122 PKPVSRRSINRKISALRTFFKYLQEINVIETNKASYISMPKFEKELPNVLNRDDLNKLRH 181 Query: 185 FWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL--- 237 + G + RL E L SGLR + + I+ G V Sbjct: 182 VINTEKITGIRDRLIIELLYSSGLRSIELINLSEFMIDIEEREIRVIGKGEKERVTFFSE 241 Query: 238 --PDGFMKLLAMTPIG-----KETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHG 288 +K + +E +N+ +K+ +AG+ K + H Sbjct: 242 NAKKWLIKYIDEKKKQYENYTREVLIVNSKGKKLTTRSLRRLISGHVHEAGIEKEITPHV 301 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 R A + G L G ++ + YT Sbjct: 302 FRHSFAMELLNNGVEIQYLQELMGHSSIAATQVYTH 337 >gi|312876294|ref|ZP_07736280.1| integrase family protein [Caldicellulosiruptor lactoaceticus 6A] gi|311796940|gb|EFR13283.1| integrase family protein [Caldicellulosiruptor lactoaceticus 6A] Length = 314 Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats. Identities = 42/279 (15%), Positives = 91/279 (32%), Gaps = 20/279 (7%) Query: 64 PRKKPTTLKW--LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121 P++ L W + ++ + + ++ + + + K Sbjct: 2 PKRSIVKLDWQEAMQQFLFYKRAEGRSERTLSDYKYHITHFFDIYPNCFNDEQQLKKCLY 61 Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM-Q 180 S+ P++ LT ++ FKW V + + NP + PK+K EG ++ + Sbjct: 62 EYLSQPIKPATYNLRLTYLKAFFKWCVEENILKSNPLEGL--PKKKAEGRIVNIDTEILE 119 Query: 181 QFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI----KTQKTGTI 232 + + G + L +G+R ++ ++H + KT Sbjct: 120 KLLKLPDKNTFCGLRDYALILLALDTGIRPKEAFSLLIEHFDFKTLQVFIPSNAAKTRVS 179 Query: 233 ITVELPD----GFMKLLAMTPIG---KETFFINNDKQKMNATQFSIWFKAKATKAGVNKS 285 + + KL+A K F + + + + + + K GV Sbjct: 180 RVLPILPVTANAVKKLIAARHPEWDEKVPVFCTVTGRPLTSDIWHGRIEMYSKKLGVKIR 239 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 + +R A + G L T G T++ + Y Sbjct: 240 PYDLRHTFALLYLKNGGYELSLQKTLGHTTLEMTKRYVH 278 >gi|238750683|ref|ZP_04612182.1| Tyrosine recombinase [Yersinia rohdei ATCC 43380] gi|238711073|gb|EEQ03292.1| Tyrosine recombinase [Yersinia rohdei ATCC 43380] Length = 263 Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats. Identities = 41/240 (17%), Positives = 81/240 (33%), Gaps = 16/240 (6%) Query: 101 QIIRKSGDFDYRKITTKHIRSGVESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINP 157 +I G ++ + +RS V K SS L+++R W V Q + NP Sbjct: 2 EIAEPMGLVHWQTLDAAQVRSLVSRSKRAGLHSSSLALRLSALRSFLDWLVSQGVLNANP 61 Query: 158 CLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQPRLAFEFLLYSGLRCSDSCRAGV 214 V P+ + +++ + + R E + +GLR S+ Sbjct: 62 AKGVSTPRSGRHLPKNIDVDEVDKLLDIDLNDPLAVRDRAMLEVMYGAGLRLSELVGMNC 121 Query: 215 QHLQNNIFSIKTQKTGTI--------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNA 266 +H+ + G+ V + ++ L + + F+ N ++++A Sbjct: 122 KHVDLASGEVWVMGKGSKERKVPIGKTAVTWLEHWLALRELFEPQDDAIFLANTGKRISA 181 Query: 267 TQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 F K GV + H +R AT ++ + G + + YT Sbjct: 182 RNVQKRFAEWGVKQGVSSHIHPHKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTH 241 >gi|116254596|ref|YP_770432.1| putative phage integrase/recombinase [Rhizobium leguminosarum bv. viciae 3841] gi|116254608|ref|YP_770444.1| putative phage integrase/recombinase [Rhizobium leguminosarum bv. viciae 3841] gi|116255785|ref|YP_771618.1| putative integrase/recombinase protein [Rhizobium leguminosarum bv. viciae 3841] gi|115259244|emb|CAK10376.1| putative phage integrase/recombinase [Rhizobium leguminosarum bv. viciae 3841] gi|115259256|emb|CAK10389.1| putative phage integrase/recombinase [Rhizobium leguminosarum bv. viciae 3841] gi|115260433|emb|CAK03537.1| putative integrase/recombinase protein [Rhizobium leguminosarum bv. viciae 3841] Length = 286 Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats. Identities = 36/253 (14%), Positives = 91/253 (35%), Gaps = 15/253 (5%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRK--ITTKHIRSGVESRKHTPSSAIQFLTSMRV 142 +L+ ++ S+ + R G R + + + S + + Q + ++R Sbjct: 18 RNLSPATQRSYLHAVTKFSRYFGRSPDRLGLEDVRAFQVHLVSSGLSWPALNQTVCALRF 77 Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS 202 F + + + + + +++ +F + R A + Sbjct: 78 FFGVTLGHGEIP----ERIAYARTPAKLPTILNGDEIVRFLEAVPS-LRTRTALTTAYAA 132 Query: 203 GLRCSDSCRAGVQHLQNNIFSIKTQ--KTGTIITVELPDGFMKLLAM-TPIGKETFFI-- 257 GLR S++ V+ + I+ + K G V L + +L + + + ++ Sbjct: 133 GLRASEAVHLKVRDIDGERGIIRVEHGKGGKDRNVMLSAQLLAILRVYWRLARPEVWLFP 192 Query: 258 -NNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWK 314 ++ + ++ ++ T AG++K + H +R AT ++G + G Sbjct: 193 GRDETKPIDVQVLYSACRSACTAAGIDKRVTVHTLRHSFATHLLESGTDIRIIQVLLGHN 252 Query: 315 TVDQAETYTKGAD 327 + YTK ++ Sbjct: 253 NLSTTARYTKVSN 265 >gi|28572274|ref|NP_789054.1| DNA recombinase [Tropheryma whipplei TW08/27] gi|28410405|emb|CAD66791.1| putative DNA recombinase [Tropheryma whipplei TW08/27] Length = 349 Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats. Identities = 44/299 (14%), Positives = 94/299 (31%), Gaps = 61/299 (20%) Query: 86 SLAVNSRISFES----YFDQIIRKSGDFDYRKITTKHIRSGVE-SRKHTPSSA-IQFLTS 139 L+ + ++ + Y + + G ++ + I +E ++HT S + + Sbjct: 34 GLSDATLQTYRNSLGIYLSWLGEQ-GTQRLSEVNSNAIERFLEYRQRHTRKSTLANTVAA 92 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS------QPR 193 +R + V + A+NP +++PK P + +++ + R Sbjct: 93 LRTFHRHLVLEGRQALNPTEKLQQPKVPKALPHPLSLDEIINLLKAADANQAREISLRDR 152 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHL---QNNIFSIKTQKTGTIITVE-------------- 236 E L +G R S++ V N+ + + + + Sbjct: 153 ALIEVLYGTGARISEAVSLNVNAFAESDQNLLRLTGKGNKQRMVLFGSYARNAVDNYLQH 212 Query: 237 -----------------------------LPDGFMKLLAMTPIGKETFFINNDKQKMNAT 267 + D +L T G F++N +++ Sbjct: 213 SRPKLLARSHVYRNITDASTLKYRPTSSTIGDAEDGVLTATAAGVPWLFLSNRGKRLTRQ 272 Query: 268 QFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 Q + A + + S H +R AT AGA + G +++ YTK Sbjct: 273 QAGNIIRKLGEAAEIGRYISPHSLRHSFATHMLQAGADIRTVQELLGHSSINTTSVYTK 331 >gi|258625073|ref|ZP_05719992.1| tyrosine recombinase XerC [Vibrio mimicus VM603] gi|258582624|gb|EEW07454.1| tyrosine recombinase XerC [Vibrio mimicus VM603] Length = 310 Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats. Identities = 36/278 (12%), Positives = 93/278 (33%), Gaps = 21/278 (7%) Query: 68 PTTLKWLISEYRKSAH-WGSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIRSGV 123 P L + + H L++ ++ +++ + + + + G + ++ +R V Sbjct: 10 PNALAQSLERFYAYLHSEKGLSLYTQRNYKQQLETMARYLAQMGLTSWPQLDAAWVRQLV 69 Query: 124 ---ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 + + SS L+S+R + + + + NP V P+++ + ++M Sbjct: 70 VLGKRQGMKASSISTRLSSLRSFLDFLILRGELQANPAKGVSAPRKQRPLPKNLDVDEMA 129 Query: 181 QFKSFW---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITV 235 Q + R E + SGLR ++ V+ + ++ + + Sbjct: 130 QLLEVTDDDPLSIRDRAIMELMYGSGLRLAELVSIDVKDVNLRDGEIRVIGKGNKERKVW 189 Query: 236 E-------LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSA 286 + + + F++ +++ K V + S Sbjct: 190 FAGQAQEWVGKWLKLRSQLANSDETALFVSKLGTRISHRSVQKRMAEWGQKQAVASHISP 249 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R AT ++ + G + + + YT Sbjct: 250 HKLRHSFATHMLESSNNLRAVQELLGHENIATTQIYTH 287 >gi|323464636|gb|ADX76789.1| tyrosine recombinase XerC [Staphylococcus pseudintermedius ED99] Length = 296 Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats. Identities = 35/262 (13%), Positives = 87/262 (33%), Gaps = 20/262 (7%) Query: 88 AVNSRISFESYFDQI-----IRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRV 142 + ++ ++ Q + ++ I ++ + ++ + ++++R Sbjct: 19 SDHTLKAYHDDLVQFNRFLAQEQLSLTAFKYIDARNYLQTLYDLGLQRTTVSRKISTLRS 78 Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAFEF 198 + + + Q+ +NP + + PK++ + E+M+ +G + R+ E Sbjct: 79 FYAFWMTQDDEIVNPFVQLVHPKKERYLPTFFYTEEMEALFQTVMQDAHKGLRDRVILEL 138 Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE--------LPDGFMKLLAMTP 249 +G+R S+ + + + IK K G V + + + Sbjct: 139 FYATGIRVSELVSLKTEDVDLEMCWIKVLGKGGKERIVPFGEFCRQSIEQYLAEFAPIQN 198 Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATK-AGVN-KSAHGVRKFSATISADAGATAHEL 307 + N Q + + AGV H +R AT + GA + Sbjct: 199 VQHPYLITNLKGQPITERGVRYVLNDIVKRTAGVTSIHPHKLRHTFATHLLNEGADLRTV 258 Query: 308 MATYGWKTVDQAETYTKGADRI 329 + G + YT ++ Sbjct: 259 QSLLGHVNLSTTGRYTHVTNQQ 280 >gi|288803800|ref|ZP_06409227.1| tyrosine recombinase XerD [Prevotella melaninogenica D18] gi|288333707|gb|EFC72155.1| tyrosine recombinase XerD [Prevotella melaninogenica D18] Length = 294 Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats. Identities = 43/275 (15%), Positives = 102/275 (37%), Gaps = 24/275 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIRSGVE---S 125 ++ ++ + + + + I++ + R + I + +R+ +E Sbjct: 3 MVEKFLDYIKFERNYSPMTVINYRKDLTEFERFYKELEPQLSWESIDSDIVRNWMEYMMD 62 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK-- 183 R ++ SS + L+++R +++A+R++ + +P ++ PK++ + + +M++ Sbjct: 63 RGNSASSVNRRLSALRSFYQFALRRKLIEKDPVHGLQGPKKQKPLPQFLKESEMERLLDS 122 Query: 184 SFWSEGSQP---RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPD 239 W++ + R +G+R S+ + + N +K T K V Sbjct: 123 KMWTDSYKDVLERTIIITFYVTGIRLSELIGLDDKDIDNVTCEVKVTGKRNKQRIVPFGK 182 Query: 240 GFMKLLA--------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGV 289 + A FF ++M Q K +K +S H + Sbjct: 183 ELADVFAQYQEVRNTTVKGDSIAFFQTEKGKRMTTAQVRTLVKKNLSKVSTLKKRSPHVL 242 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 R AT + A + G +++ E YT Sbjct: 243 RHTFATAMLNHEAGLESVKKLLGHESLSTTEIYTH 277 >gi|47097538|ref|ZP_00235075.1| integrase/recombinase XerC [Listeria monocytogenes str. 1/2a F6854] gi|254828640|ref|ZP_05233327.1| integrase/recombinase XerC [Listeria monocytogenes FSL N3-165] gi|254898558|ref|ZP_05258482.1| hypothetical protein LmonJ_02045 [Listeria monocytogenes J0161] gi|254911951|ref|ZP_05261963.1| integrase/recombinase XerC [Listeria monocytogenes J2818] gi|254936278|ref|ZP_05267975.1| integrase/recombinase XerC [Listeria monocytogenes F6900] gi|47014086|gb|EAL05082.1| integrase/recombinase XerC [Listeria monocytogenes str. 1/2a F6854] gi|258601039|gb|EEW14364.1| integrase/recombinase XerC [Listeria monocytogenes FSL N3-165] gi|258608867|gb|EEW21475.1| integrase/recombinase XerC [Listeria monocytogenes F6900] gi|293589913|gb|EFF98247.1| integrase/recombinase XerC [Listeria monocytogenes J2818] Length = 300 Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats. Identities = 38/273 (13%), Positives = 96/273 (35%), Gaps = 27/273 (9%) Query: 77 EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK------ITTKHIRSGVESRKHTP 130 +Y S + +VN+ ++E+ R + + + + ++ + + Sbjct: 13 DYLHSER--NYSVNTSTAYENDLLDFRRFLNEQAITTYQQVTFLDVRIYLTELKQKSFSR 70 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ-----FKSF 185 ++ + ++S+R + + +R+ + NP V K + + + E+M+ ++ Sbjct: 71 TTVARKISSLRSFYTFLLRENVINENPFTYVSHAKNQLRLPKFFYSEEMEALFQVVYEDN 130 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVEL------- 237 + + R+ E L +G+R S+ + L + +I K V Sbjct: 131 ETLTLRDRVLLEVLYGTGIRVSECAGILLPDLDTSYQAILIRGKGNKERYVPFGAYAEDA 190 Query: 238 ----PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRK 291 + L++ + +N+ + +KA + + H +R Sbjct: 191 ITDYLPERVNLMSRYKKSHDALLVNHYGDPLTTRGIRYCLTKIISKASLTRKIHPHMLRH 250 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTK 324 AT + GA + G ++ + YT Sbjct: 251 TFATDLLNNGADMRTVQELLGHASLSSTQIYTH 283 >gi|257485772|ref|ZP_05639813.1| Phage integrase:Phage integrase, N-terminal SAM-like protein [Pseudomonas syringae pv. tabaci ATCC 11528] gi|302130294|ref|ZP_07256284.1| Phage integrase:Phage integrase, N-terminal SAM-like protein [Pseudomonas syringae pv. tomato NCPPB 1108] gi|331012868|gb|EGH92924.1| Phage integrase [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 320 Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats. Identities = 55/277 (19%), Positives = 104/277 (37%), Gaps = 32/277 (11%) Query: 84 WGSLA-VNSRISFESYFDQIIRKSGDF---DYRKITTKHI---RSGVESRKHTPSSAIQF 136 + +L +R ++++ + G ++R +T H+ R+ +E R ++ + Sbjct: 33 FANLDNPRTRRAYQNDLEDFCGFVGLASADEFRVVTRSHVLAWRAQLEHRGLAGATIRRK 92 Query: 137 LTSMRVLFKWAVRQE-YVAINPCLSVERPKRKT-EGIRPWTKED-----MQQFKSFWSEG 189 L ++ LF + NP V+RPK ++ EG P + ++ +G Sbjct: 93 LAALASLFDHLLESNAIAGGNPVHGVKRPKIESNEGKTPALGDHQAKALLEAPDETTLKG 152 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKT-QKTGTIITVELPDG------ 240 + R LLY GLR ++ V +Q+ I +K K G + + L Sbjct: 153 LRDRALMAVLLYHGLRREEAALLQVGDIQDRRGIQHLKVHGKGGKVRYLPLHPVAAGRIH 212 Query: 241 --FMKLLAMTPIGKETFFINNDKQ----KMNATQFSIWFKAKATKAGV---NKSAHGVRK 291 K FI + + A + A A KAG+ HG+R Sbjct: 213 QYLESSGHHWADRKVPLFIPLRGKLTGAGITANGIYMVVAAYAKKAGIQVDGLGVHGLRA 272 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 +AT + + A ++ A G + + Y + +R Sbjct: 273 TAATNALEHEADIAKVQAWLGHANISTTKIYDRRENR 309 >gi|269120003|ref|YP_003308180.1| integrase family protein [Sebaldella termitidis ATCC 33386] gi|268613881|gb|ACZ08249.1| integrase family protein [Sebaldella termitidis ATCC 33386] Length = 344 Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats. Identities = 48/329 (14%), Positives = 112/329 (34%), Gaps = 25/329 (7%) Query: 26 RKGHGRRIRLPYPHESTFIPAYM---------SALTGSTPKREYINSPRKKPTTLKWLIS 76 RK +R+ + Y A+ + + T L Sbjct: 18 RKPWA--VRVTTGWSKDYKQQYKYLGYYTTRKDAMQALAEYNTNPYNIDESEITFGELHE 75 Query: 77 EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQF 136 + K+ H+ L+VN+ ++ + F+ + + +I T H+++ ++ + + Sbjct: 76 RW-KNKHFKDLSVNTIKTYNTAFNY-CKPILNLKMTEIKTVHLQNFIDDLNKNHGTLMIL 133 Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKT-EGIRPWTKEDMQQFKSFWSEGSQPRLA 195 + +F++A++ + + + + KRK + +T ++ Sbjct: 134 KNVINQVFEYAMKLDIIQKDYSKFINVGKRKVLKEKSVFTDAEIDLLWDNLQNFKYADTI 193 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKT--GTIITVELPDGFMKLLAMT--P 249 ++Y+G+R + Q + ++K KT G + + +L+ + Sbjct: 194 L-IMIYTGMRIGELLSLMKQDVDLIEQTITVKESKTAAGRNRVIPIHPRIKELIHIRYEH 252 Query: 250 IGKETFFINNDKQKM--NATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHEL 307 + + + +F +N + H R AT DAG A + Sbjct: 253 SNIDNLIASATNKTSLEYVNYLRHFFAPVMKSLKMNHTPHDCRHTFATRLNDAGGNATAI 312 Query: 308 MATYGWKTVDQAET-YT-KGADRIRLGIK 334 G ++ E YT K D +R ++ Sbjct: 313 KKMIGHESFTLTEKVYTHKKIDELRKALE 341 >gi|218263889|ref|ZP_03477845.1| hypothetical protein PRABACTJOHN_03535 [Parabacteroides johnsonii DSM 18315] gi|218222439|gb|EEC95089.1| hypothetical protein PRABACTJOHN_03535 [Parabacteroides johnsonii DSM 18315] Length = 327 Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats. Identities = 46/279 (16%), Positives = 99/279 (35%), Gaps = 15/279 (5%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133 LI + + + S + S + IRK G + R ITT +R+ + + T + Sbjct: 52 LIDSFLSAKRVEGCSDKSIHYYRSTLNNAIRKIG-KNIRHITTDDLRNYLNDYQQTSGAT 110 Query: 134 ----IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 + F W ++Y+ +P + + K ++ E ++Q + EG Sbjct: 111 KVTVDNIRRILSSFFSWLEDEDYIVKSPVRRIHKVKVGKTVKETYSDEALEQMRDHC-EG 169 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDG----FMKL 244 + + L +G+R + + + N I T K V + Sbjct: 170 IRDLALIDLLASTGMRVGELVKLNRNDIDFENRECIVTGKGDKQRRVYFDARAKIHLQRY 229 Query: 245 LAMTPIGKETFFIN--NDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAG 301 LA F++ ++ + I + + + K H R+ AT++ D G Sbjct: 230 LAERIDDNPALFVSLLAPYDRLQISGVEIRLRRLGRELNIPKVHPHKFRRTLATMAIDKG 289 Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340 ++ G +++D Y ++ + + + + I Sbjct: 290 MPIEQVQHLLGHQSLDTTLQYA-MVNQTNVKMSHRKFIG 327 >gi|254461252|ref|ZP_05074668.1| phage integrase, putative [Rhodobacterales bacterium HTCC2083] gi|206677841|gb|EDZ42328.1| phage integrase, putative [Rhodobacteraceae bacterium HTCC2083] Length = 422 Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats. Identities = 54/343 (15%), Positives = 113/343 (32%), Gaps = 56/343 (16%) Query: 51 LTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSR-ISFESYFDQIIRKSGDF 109 + G+ P E + + T+ LI EY KS + + A ++R I G+ Sbjct: 80 INGNDPLEEKYDPTKSF--TVTNLIDEYLKSVAYLNKADSTRYTDICRIDRHIKPLVGNR 137 Query: 110 DYRKITTKHIRSGVES------RKHTPS--------------SAIQFLTSMRVLFKWAVR 149 I + + ++ PS +A + R + W + Sbjct: 138 LVSSIDMRFVEKLFRDIASGKTKRDKPSGKKFGRSTVRGGEGAARSTIRLFRAILSWGEK 197 Query: 150 QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL--------------- 194 V N + +G R +D + ++ W + RL Sbjct: 198 AALVDHNIVRAARNVDIGRDGKRETILDDPEAYEQLW--HTLDRLSDPDQENENHAPIQQ 255 Query: 195 ----AFEFLLYSGLRCSDSCRAGVQHLQ--------NNIFSIKTQKTGTIITVELPDGFM 242 A + ++ +G R + + + + ++TG + LP + Sbjct: 256 EATDAIKVIMLTGARKGEITNLLWEQVDLESGIISIDPHLHKTGRRTGDRRIIGLPQLAI 315 Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADA 300 ++L+ + + K+ + S ++ +A + + HG+R A+ A Sbjct: 316 EILSSYSVELRAGLVFKSKRSSDVIDLSKIWRRVREEANLPPTLGLHGLRHSLASHMAMD 375 Query: 301 GATAHELMATYGWKTVDQAETYTK--GADRIRLGIKNSRRISS 341 GA+A E+M G + + + Y A R L +++ Sbjct: 376 GASASEIMTALGHRDITSTQRYIHWALASRQSLAENAVSKLTE 418 >gi|325960047|ref|YP_004291513.1| tyrosine recombinase xerC [Methanobacterium sp. AL-21] gi|325331479|gb|ADZ10541.1| Tyrosine recombinase xerC [Methanobacterium sp. AL-21] Length = 331 Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats. Identities = 43/273 (15%), Positives = 90/273 (32%), Gaps = 25/273 (9%) Query: 74 LISEYRKSAHWGSLAVNSRISFESY---FDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130 +I +Y + + N+ ++ S F + ++ D ++ + + + K Sbjct: 44 MIEDYLIELEIRNYSKNTIKTYRSIIINFHKFLKSEKDLYDERLVLRAFKRYIRYLKREK 103 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----------- 179 + + ++ + V+ K + + V+ PKR + + ++ Sbjct: 104 NVSQNYIYLVTVVVKKFFEFGGIGV--LKDVQTPKRTKSLPKSLNENEILSLINAMDHDK 161 Query: 180 QQFKSFWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL 237 + S SE + R + L SGLR S+ +I+ + G + L Sbjct: 162 DDYLSETSEFLRLRNKVILALLYSSGLRVSELVTLHSDSFDLTDRTIRIRGKGEKDRIVL 221 Query: 238 PDG-----FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290 D L + + F+N + + K A AG+ K + H +R Sbjct: 222 FDEQTKELLEGYLQVRGDHSDYLFVNRSGNHLTPRYIQMMIKDYAKAAGIKKKVTPHILR 281 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYT 323 AT G + G + + YT Sbjct: 282 HSFATHLLKNGVDIRAIQQLLGHSNLSTTQIYT 314 >gi|312621789|ref|YP_004023402.1| integrase family protein [Caldicellulosiruptor kronotskyensis 2002] gi|312202256|gb|ADQ45583.1| integrase family protein [Caldicellulosiruptor kronotskyensis 2002] Length = 286 Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats. Identities = 47/284 (16%), Positives = 104/284 (36%), Gaps = 25/284 (8%) Query: 76 SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF--------DYRKITTKHIRSGVESRK 127 +Y K+ + N+ S+ + +R D + + +S + + Sbjct: 6 EDYLKTQDFT---ENTIKSYTKDVELFMRWYVDTTGQEFLPENLTEFDLVEYKSYLLRKN 62 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE--GIRPWTKEDMQQFK-S 184 H PS+ + + S+R + + + + + +++ K T K+D+ +F+ + Sbjct: 63 HKPSTVNRSIISLRKFVHFLLDRGLLNKDISTRLKQVKDTTRNLSPVVLDKKDIYKFRRT 122 Query: 185 FWSEGSQPRLAF-EFLLYSGLRCSDSCRAGVQHLQ--NNIFSIK-TQKTGTIITVELPDG 240 G +AF E LL +G+R S++ ++ ++ +K K + V L Sbjct: 123 VHQFGKTRDVAFVELLLNTGMRISEAINLKLEDVEISERKGKVKIWGKGRSYREVPLNSD 182 Query: 241 ----FMKLLAMTP-IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSAT 295 + L P F+ + +K+ + A AG+ H +R F A Sbjct: 183 ARKYLSEYLKKRPYSETNYLFVTSTGKKLTRNSAYKIIQKYAKLAGLCLHPHMLRHFFAQ 242 Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339 D G +++ G + ++ Y K +L + + Sbjct: 243 TLIDKGLNIYDVQQLLGHQRIETTLRYKKP--NTKLQEEMVENL 284 >gi|261419412|ref|YP_003253094.1| site-specific tyrosine recombinase XerC [Geobacillus sp. Y412MC61] gi|297530613|ref|YP_003671888.1| tyrosine recombinase XerC [Geobacillus sp. C56-T3] gi|319766227|ref|YP_004131728.1| tyrosine recombinase XerC [Geobacillus sp. Y412MC52] gi|261375869|gb|ACX78612.1| tyrosine recombinase XerC [Geobacillus sp. Y412MC61] gi|297253865|gb|ADI27311.1| tyrosine recombinase XerC [Geobacillus sp. C56-T3] gi|317111093|gb|ADU93585.1| tyrosine recombinase XerC [Geobacillus sp. Y412MC52] Length = 300 Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats. Identities = 45/284 (15%), Positives = 89/284 (31%), Gaps = 28/284 (9%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE------SR 126 L EY + + + + + + +Q R + + + Sbjct: 9 QLFMEYLQIE--KNYSQYTIVCYRRDIEQFFRFMDEEGIGALNEVSYSDVRLYLTKLYEQ 66 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK--- 183 + S + ++S+R +K+ +R+ VA NP PK++ + ++++ Sbjct: 67 QLASRSVARKISSLRSFYKFLLREGRVAENPFALATLPKKEQKIPNFLYPKELEALFLVN 126 Query: 184 -SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVE----- 236 + G + E L +G R S+ C + + + K V Sbjct: 127 DENTALGQRNAALLELLYATGARVSECCHIQLSDVDFVAETVLIHGKGNKQRYVPFGRPA 186 Query: 237 -------LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAH 287 + G +L P F+N + A + N S H Sbjct: 187 REALERYIHRGRRELTRKLPADHRYLFVNARGNPLTPRGVRHILDRIVEAAALTQNISPH 246 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIR 330 +R AT + GA + G + + YT DR+R Sbjct: 247 VLRHTFATHLLNEGADLRSVQELLGHAHLSSTQVYTHVTKDRLR 290 >gi|172057895|ref|YP_001814355.1| integrase family protein [Exiguobacterium sibiricum 255-15] gi|171990416|gb|ACB61338.1| integrase family protein [Exiguobacterium sibiricum 255-15] Length = 292 Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats. Identities = 41/255 (16%), Positives = 89/255 (34%), Gaps = 16/255 (6%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS---GVESRKHTPSSAIQFLTSMR 141 L+ N+ S++ Q D I R + +K + S+ Q ++ ++ Sbjct: 22 RQLSPNTGRSYDQTLRQYAAFCLDHQLGSIELATARRYLFALYDQKASKSTIAQKVSCLK 81 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQFKSFWSEGSQPRLAFE 197 ++ V ++ +NP ++ PKR + ++ F++ + G + E Sbjct: 82 QFGRF-VTRDTNDVNPFEGLKAPKRVQTLPTFLVPSEYERFLEVFRTSDALGVRNVALIE 140 Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-ELPDGFMKLL-----AMTPIG 251 L +G+R S+ V+ L +++ + G + + K L P Sbjct: 141 LLYATGMRVSELAGLNVKDLDSDLEYVHVYGKGRKERITPIGSFARKALTDYLAERQPTE 200 Query: 252 KE--TFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMA 309 E F++ +++ K + + H +R AT + GA + Sbjct: 201 DEEQAVFLSRSGRRLTTDGIRKILKKADPFLSKHVTPHALRHSFATDLLERGADLRAVQE 260 Query: 310 TYGWKTVDQAETYTK 324 G ++ YT Sbjct: 261 LLGHASLSTTGQYTH 275 >gi|188586009|ref|YP_001917554.1| integrase family protein [Natranaerobius thermophilus JW/NM-WN-LF] gi|254799348|sp|B2A335|XERC_NATTJ RecName: Full=Tyrosine recombinase xerC gi|179350696|gb|ACB84966.1| integrase family protein [Natranaerobius thermophilus JW/NM-WN-LF] Length = 299 Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats. Identities = 47/274 (17%), Positives = 99/274 (36%), Gaps = 28/274 (10%) Query: 85 GSLAVNSRISFESYF----DQIIRKSGDFDYRKITTKHIRSGVESRKHT---PSSAIQFL 137 +L+ + ++ + + + + ++T KHIR + K S+ + L Sbjct: 16 KNLSHYTVDNYYKDLTQAENFFNEQFELYQWDEVTHKHIRHFLAYLKDKNYEKSTTARKL 75 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---WSEGSQPRL 194 +++R LFK+ R+E + N + PK++ + + E+++ + G + + Sbjct: 76 SAIRSLFKFLTREEKIRSNTSALLATPKKERKLPEFLSIEEVEMLINAPGDDPFGLRDKA 135 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-------------ITVELPDGF 241 E SG+R + +Q+L +K G I I L + Sbjct: 136 ILEVFYCSGIRLGELWGLDLQNLDLQTGYLKVTGKGNIERLAPLGSFALAAIEDYLYNAR 195 Query: 242 MKLLAMTPI--GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS 297 +LL + F+N +++ K + S H +R AT Sbjct: 196 PELLKKNKSVENCDALFLNKFGTRISQRSIRRRVKKYVQQTASEHRVSPHSLRHSFATHL 255 Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 + GA + G + + YT ++ R+ Sbjct: 256 LEGGADLRAVQELLGHVNISTTQIYTH-VNQARM 288 >gi|89895059|ref|YP_518546.1| hypothetical protein DSY2313 [Desulfitobacterium hafniense Y51] gi|89334507|dbj|BAE84102.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 322 Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats. Identities = 47/294 (15%), Positives = 91/294 (30%), Gaps = 45/294 (15%) Query: 85 GSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESRKHTPSSAI---QFLTS 139 L+ N+R S+E + + + + K+ SA ++L + Sbjct: 20 RGLSPNTRNSYERDLRKFTAFLQQRGKNIIACEGNDLFLFLLQEKNQGRSARTLARYLAT 79 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK----SFWSEGSQP--- 192 +R F + + +E +P + PK + ++ + + EG +P Sbjct: 80 LRGFFAFLLGEEMREDDPTEYLSTPKLEQHLPHVLSEGSISKLMGEGGDRDKEGPKPGKS 139 Query: 193 --------------------RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT- 231 E L GLR S+ V + +++ + G+ Sbjct: 140 SKKAGDSDSEGKDKGLLMRNMAMIEVLYGCGLRVSELVGLKVSDIIFETRTLRCRGKGSK 199 Query: 232 IITVELPDGFMKLLA----------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281 V + + +++L E F+N+ + K A G Sbjct: 200 ERIVPIGEYALEVLQNYLEHDRERLRGKHKTEVLFLNSRGTALTRQGIWDILKKWAQTHG 259 Query: 282 V--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 V N H R AT D GA + G + + YT + + L + Sbjct: 260 VQENIYPHKFRHSFATHLLDHGADLRSVQEMLGHADIATTQIYTHLSRQRLLEV 313 >gi|260426671|ref|ZP_05780650.1| tyrosine recombinase XerD [Citreicella sp. SE45] gi|260421163|gb|EEX14414.1| tyrosine recombinase XerD [Citreicella sp. SE45] Length = 308 Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats. Identities = 43/272 (15%), Positives = 85/272 (31%), Gaps = 32/272 (11%) Query: 85 GSLAVNSRISFESYFDQI-----IRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139 A N+ ++ R +G ++ + E+ S+ + L+S Sbjct: 18 RGAADNTTAAYARDLADFTRWLTARGAGLDTAQRADVEDYLVTCEAEGLAISTRARRLSS 77 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-------SEGSQP 192 ++ L+++A + + NP + + P + + + E++ + + + Sbjct: 78 IKQLYRFAFEEGLRSDNPAVQISGPGKPKRLPKTLSIEEVDRLIEAAASQGRTEDDRLRN 137 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFMKLLA----- 246 + L +G+R ++ V + + + K G V L LA Sbjct: 138 ACLMQLLYATGMRVTELVTLPVSAARGDPRMLLIRGKGGKERMVPLSPPARVALATWLSR 197 Query: 247 ----------MTPIGKETFFINNDK-QKMNATQFSIWFKAKATKAGV---NKSAHGVRKF 292 F + K + F + K A AGV + H +R Sbjct: 198 RDEQEAVAHAAGKPASVHLFPSRGKAGHLTRHAFYLLIKEIAVSAGVSPGKVTPHTLRHA 257 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTK 324 AT GA + G V E YT Sbjct: 258 FATHLLQNGADLRAIQTFLGHADVATTEIYTH 289 >gi|118464686|ref|YP_882254.1| site-specific tyrosine recombinase XerD [Mycobacterium avium 104] gi|254775522|ref|ZP_05217038.1| site-specific tyrosine recombinase XerD [Mycobacterium avium subsp. avium ATCC 25291] gi|118165973|gb|ABK66870.1| tyrosine recombinase XerD [Mycobacterium avium 104] Length = 313 Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats. Identities = 43/274 (15%), Positives = 83/274 (30%), Gaps = 35/274 (12%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS----GVESRKHTPSS-------- 132 +A N+ S+ + + D + V R+ P + Sbjct: 21 RGVAANTLSSYRRDLRRYTKHLSDRGISDLAKVGEDDVSDFLVALRRGDPDTGAAALSAV 80 Query: 133 -AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----- 186 A + L ++R L ++ + ++ +V P + T + + Sbjct: 81 SAARALIAVRGLHRFLAAEGLAELDVARAVRPPTPGRRLPKSLTIDQVLALLEAAGGESP 140 Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFM 242 + R E L +G R S++ V + + K G V + + Sbjct: 141 ADGPLTLRNRALLELLYSTGARISEAVGLDVDDVDTQARSVLLRGKGGKQRLVPIGRPAV 200 Query: 243 KLL-----------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGV 289 L A G F+N +++ + A +AG+ S H + Sbjct: 201 AALDAYLVRGRSELARRGRGTPAIFLNVRGGRLSRQSAWQVLQDAAERAGITSGVSPHML 260 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYT 323 R AT + GA + G +V + YT Sbjct: 261 RHSFATHLLEGGADVRVVQELLGHASVTTTQIYT 294 >gi|319649574|ref|ZP_08003730.1| tyrosine recombinase [Bacillus sp. 2_A_57_CT2] gi|317398736|gb|EFV79418.1| tyrosine recombinase [Bacillus sp. 2_A_57_CT2] Length = 300 Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats. Identities = 45/278 (16%), Positives = 94/278 (33%), Gaps = 26/278 (9%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS------GVESRK 127 L EY + + + + ++ + + +T + + +K Sbjct: 11 LFIEYLQIE--KNYSQYTIEHYQHDISEFFMFMAEQAIADLTKVAYQDVRIYLTELYDKK 68 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF----K 183 + S + ++S+R FK+ +R+E VA NP V PK + + + + +M Q + Sbjct: 69 MSRKSVARKISSLRSFFKFLLREEKVAENPFALVSIPKAQKKLPEFFYEAEMMQLFNACE 128 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-IITVELPDGFM 242 + G + + E L +G+R S+ + ++ L + ++ + G+ V Sbjct: 129 ASTPLGQRNKALLELLYATGIRVSECSQIRLKDLDMYLSTVLVRGKGSKERYVPFGSFAQ 188 Query: 243 KLLAMTPIGK-----------ETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGV 289 L E F+N + A K+ + H + Sbjct: 189 DALDTYINHGREKLLANGNVQENLFLNARGGPLTARGIRTILDRIIEKSSLTGKIHPHML 248 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 R AT GA + G + + YT + Sbjct: 249 RHTFATHLMANGADMRTVQELLGHAFLSSTQVYTHVTN 286 >gi|240948880|ref|ZP_04753236.1| site-specific tyrosine recombinase XerC [Actinobacillus minor NM305] gi|240296695|gb|EER47306.1| site-specific tyrosine recombinase XerC [Actinobacillus minor NM305] Length = 300 Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats. Identities = 35/260 (13%), Positives = 87/260 (33%), Gaps = 21/260 (8%) Query: 85 GSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIRSGV---ESRKHTPSSAIQFLT 138 ++ ++ +++ + ++ ++++ IR + + S L Sbjct: 20 KQVSPHTLSNYQRQLQAVCAMLKQQQISSWQEVDASVIRWILSQSHKQGLGAKSIGVRLV 79 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF---KSFWSEGSQPRLA 195 ++R F + V+ E + NP L ++ PK + E + Q ++ + Sbjct: 80 ALRQWFAYLVKNEQLQANPALGIKAPKVGRHLPKNVDAEQVAQLLNTEATKPLEIRDLAM 139 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------ELPDGFMKLLA 246 E + SGLR S+ + + + ++ G + + + Sbjct: 140 MELMYSSGLRLSELQGLDLDRMDLSTREVRLLGKGNKERIVPIGSKALEAIHRWLEVRMR 199 Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATA 304 P F+NN +++ + + K G+ + H +R AT + Sbjct: 200 FNP-QDNAVFLNNRGGRLSHRSIQLIMEKWGRKQGLETHLHPHKLRHSFATHMLEGSGDL 258 Query: 305 HELMATYGWKTVDQAETYTK 324 + G ++ + YT Sbjct: 259 RAVQELLGHSSLATTQIYTH 278 >gi|327405762|ref|YP_004346600.1| integrase family protein [Fluviicola taffensis DSM 16823] gi|327321270|gb|AEA45762.1| integrase family protein [Fluviicola taffensis DSM 16823] Length = 370 Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats. Identities = 44/266 (16%), Positives = 94/266 (35%), Gaps = 17/266 (6%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR----SGVESRKHTP 130 I+ + + ++ ++ +R G IT + + ++K + Sbjct: 98 IAVFVAYMQRTRYSESTIKTYSESIGVFLRFVGVKSTNLITNDDLAQFNNEYIIAKKLSA 157 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 S Q L ++++ K V V ++P V+RP+ +K++++Q + + Sbjct: 158 SYQNQVLNAVKLFCK--VHAG-VKLDP-ELVKRPRSAKTLPNVLSKQEVKQLL-YATTNL 212 Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVEL----PDGFMKL 244 + R+ + GLR S+ + + + I K V L + + Sbjct: 213 KHRMMLSVIYACGLRRSELLSLQPKDILSDRLLIHIHQAKGKKDRVVPLSKLLLEQLREY 272 Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302 + K F +K + K TK + K + H +R AT ++G Sbjct: 273 YKIYRPIKWIFEGEKPGEKYGERSLQLVLKRALTKTNIKKDVTLHWLRHSYATHLLESGT 332 Query: 303 TAHELMATYGWKTVDQAETYTKGADR 328 + G K+ E YT +++ Sbjct: 333 DIRFIQELLGHKSSTTTEIYTHVSNK 358 >gi|15966434|ref|NP_386787.1| site-specific tyrosine recombinase XerD [Sinorhizobium meliloti 1021] gi|307318393|ref|ZP_07597828.1| tyrosine recombinase XerD [Sinorhizobium meliloti AK83] gi|34222988|sp|Q92ME3|XERD_RHIME RecName: Full=Tyrosine recombinase xerD gi|15075705|emb|CAC47260.1| Probable integrase/recombinase DNA recombination protein [Sinorhizobium meliloti 1021] gi|306896075|gb|EFN26826.1| tyrosine recombinase XerD [Sinorhizobium meliloti AK83] Length = 311 Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats. Identities = 47/282 (16%), Positives = 96/282 (34%), Gaps = 29/282 (10%) Query: 72 KWLISEYRKS-AHWGSLAVNSRISFESYFDQII-----RKSGDFDYRKITTKHIRSGVES 125 + + + + A N+ S+E + R +G D + S + Sbjct: 6 AAYVEAFLEMMSAERGAAANTLQSYERDLEDARSFLRSRGTGLTDASADDLRSYLSHLAG 65 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF--- 182 + SS + L+++R +K+ + +P ++ PK+ + + ED+ + Sbjct: 66 QGFKASSQARRLSALRQFYKFLYAEGLRTDDPTGILDAPKKARTLPKTLSIEDVTRLIGQ 125 Query: 183 -KSFWSEGS-------QPRLAFEFLLYSGLRCSDSCRAGVQHL-QNNIFSIKTQKTGTII 233 ++ GS + E L +G+R S+ L QN F I K Sbjct: 126 AEAEAKSGSDDVMAKLRMHALIELLYATGMRVSELVSLPASVLAQNGRFLIIRGKGNKER 185 Query: 234 TVELPDGFMKLLAMTP------IGKETFFINNDKQ--KMNATQFSIWFKAKATKAGVNK- 284 V L ++ + + ++ + + F+ K+ A +AG+ Sbjct: 186 LVPLSQAAIRAMRAYGEALQEESADSPWLFPSNGKSGHLPRQVFARDLKSLAARAGIRVA 245 Query: 285 --SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 S H +R A+ GA + G + + YT Sbjct: 246 AISPHVLRHAFASHLLANGADLRAVQELLGHSDISTTQIYTH 287 >gi|16803317|ref|NP_464802.1| hypothetical protein lmo1277 [Listeria monocytogenes EGD-e] gi|224499052|ref|ZP_03667401.1| hypothetical protein LmonF1_04845 [Listeria monocytogenes Finland 1988] gi|224501778|ref|ZP_03670085.1| hypothetical protein LmonFR_04567 [Listeria monocytogenes FSL R2-561] gi|254829966|ref|ZP_05234621.1| hypothetical protein Lmon1_01355 [Listeria monocytogenes 10403S] gi|255016911|ref|ZP_05289037.1| hypothetical protein LmonF_02001 [Listeria monocytogenes FSL F2-515] gi|284801662|ref|YP_003413527.1| hypothetical protein LM5578_1415 [Listeria monocytogenes 08-5578] gi|284994804|ref|YP_003416572.1| hypothetical protein LM5923_1368 [Listeria monocytogenes 08-5923] gi|34222941|sp|Q8Y7K0|XERC_LISMO RecName: Full=Tyrosine recombinase xerC gi|16410693|emb|CAC99355.1| codV [Listeria monocytogenes EGD-e] gi|284057224|gb|ADB68165.1| hypothetical protein LM5578_1415 [Listeria monocytogenes 08-5578] gi|284060271|gb|ADB71210.1| hypothetical protein LM5923_1368 [Listeria monocytogenes 08-5923] Length = 300 Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats. Identities = 38/273 (13%), Positives = 96/273 (35%), Gaps = 27/273 (9%) Query: 77 EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK------ITTKHIRSGVESRKHTP 130 +Y S + +VN+ ++E+ R + + + + ++ + + Sbjct: 13 DYLHSER--NYSVNTSTAYENDLLDFRRFLNEQAITTYQQVTFLDVRIYLTELKQKSFSR 70 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ-----FKSF 185 ++ + ++S+R + + +R+ + NP V K + + + E+M+ ++ Sbjct: 71 TTVARKISSLRSFYTFLLRENVINENPFTYVSHAKNQLRLPKFFYSEEMEALFQVVYEDN 130 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVEL------- 237 + + R+ E L +G+R S+ + L + +I K V Sbjct: 131 ETLTLRDRVLLEVLYGTGIRVSECAGILLPDLDTSYQAILIRGKGNKERYVPFGAYAEDA 190 Query: 238 ----PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRK 291 + L++ + +N+ + +KA + + H +R Sbjct: 191 ITDYLPERVNLMSRYKKSHDALLVNHYGDPLTTRGIRYCLTKIISKASLTRKIHPHMLRH 250 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTK 324 AT + GA + G ++ + YT Sbjct: 251 TFATDLLNNGADMRTVQELLGHASLSSTQIYTH 283 >gi|302345052|ref|YP_003813405.1| putative tyrosine recombinase XerC [Prevotella melaninogenica ATCC 25845] gi|302149339|gb|ADK95601.1| putative tyrosine recombinase XerC [Prevotella melaninogenica ATCC 25845] Length = 294 Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats. Identities = 45/275 (16%), Positives = 103/275 (37%), Gaps = 24/275 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIRSGVE---S 125 ++ ++ + + + + I++ + R + I + +R+ +E Sbjct: 3 MVEKFLDYIKFERNYSPMTVINYRKDLTEFERFYKELEPQLSWESIDSDIVRNWMEYMMD 62 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK-- 183 R ++ SS + L+++R +++A+R++ + +P ++ PKR+ + + +M++ Sbjct: 63 RGNSASSVNRRLSALRSFYRFALRRKLIEKDPVHGLQGPKRQKTLPQFLKESEMERLLDS 122 Query: 184 SFWSEGSQP---RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPD 239 W++ + R +G+R S+ + + N IK T K V Sbjct: 123 KMWTDSYKDVLERTIIITFYVTGIRLSELIGLDDKDIDNVTCEIKVTGKRNKQRIVPFGK 182 Query: 240 GFMKLL--------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGV 289 + A + FF ++M Q K +K +S H + Sbjct: 183 ELADVFAQYQEVRNATVKGDSKAFFQTEKGKRMTTAQVRTLVKKNLSKVSTLKKRSPHVL 242 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 R AT + A + G +++ E YT Sbjct: 243 RHTFATAMLNHEAGLESVKKLLGHESLSTTEIYTH 277 >gi|325971099|ref|YP_004247290.1| tyrosine recombinase xerC [Spirochaeta sp. Buddy] gi|324026337|gb|ADY13096.1| Tyrosine recombinase xerC [Spirochaeta sp. Buddy] Length = 297 Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats. Identities = 45/279 (16%), Positives = 94/279 (33%), Gaps = 20/279 (7%) Query: 73 WLISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH------IRSGVES 125 LI+ + + SL+ ++ ++E Q+ + +R V+ Sbjct: 5 NLIATFLTTQKSIRSLSEHTLCAYERDLLQLQSYFTSLQVPLLEASREDARMFVRYLVKD 64 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + SS + ++ R + ++ E +A NP + ++ T E++ S Sbjct: 65 SSYAQSSINRKISCARSFYSSLLKAERIASNPFSLIAVHRQMDRLPSVLTVEEVTALLSL 124 Query: 186 WSEG---SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGF 241 ++ F L +G R S+ ++ ++ K V D Sbjct: 125 PYADFPSTRDMTVFTLLYDTGCRISELLSIKESDIEWETKRVRVLGKGNKSRYVFFTDHC 184 Query: 242 MKLLAMTPIGK------ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFS 293 LL+ K +N +++ + F ++ G K + H +R Sbjct: 185 ASLLSSYLSLKHERFSNPLLICSNKGKQLPMSTVGSMFAVYRSRLGWQKPFTPHVLRHTY 244 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 AT D GA + G +++ + YT + RL Sbjct: 245 ATHLLDNGADIRLVQELLGHQSISTTQIYTH-VSKERLA 282 >gi|257465111|ref|ZP_05629482.1| site-specific tyrosine recombinase XerC [Actinobacillus minor 202] gi|257450771|gb|EEV24814.1| site-specific tyrosine recombinase XerC [Actinobacillus minor 202] Length = 300 Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats. Identities = 35/260 (13%), Positives = 86/260 (33%), Gaps = 21/260 (8%) Query: 85 GSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIRSGV---ESRKHTPSSAIQFLT 138 ++ ++ +++ + ++ ++++ IR + + S L Sbjct: 20 KQVSPHTLSNYQRQLQAVCAMLKQHQISSWQEVDASVIRWILSQSHKQGLGAKSIGVRLV 79 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF---KSFWSEGSQPRLA 195 ++R F + V+ E + NP L ++ PK + E + Q + + Sbjct: 80 ALRQWFAYLVKHEQLPANPALGIKAPKVGRHLPKNVDAEQVAQLLNTEVTTPLEIRDLAM 139 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------ELPDGFMKLLA 246 E + SGLR S+ + + ++ G + + ++ Sbjct: 140 MELMYSSGLRLSELQGLDLDRMDLATREVRLLGKGNKERIVPIGSKALEAIHRWLEVRMS 199 Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATA 304 P F+NN +++ + + K G+ + H +R AT + Sbjct: 200 FNP-QDNAVFLNNRGGRLSHRSIQLIMEKWGRKQGLETHLHPHKLRHSFATHMLEGSGDL 258 Query: 305 HELMATYGWKTVDQAETYTK 324 + G ++ + YT Sbjct: 259 RAVQELLGHSSLATTQIYTH 278 >gi|308235900|ref|ZP_07666637.1| tyrosine recombinase XerD [Gardnerella vaginalis ATCC 14018] gi|311115004|ref|YP_003986225.1| integrase/recombinase [Gardnerella vaginalis ATCC 14019] gi|310946498|gb|ADP39202.1| integrase/recombinase [Gardnerella vaginalis ATCC 14019] Length = 335 Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats. Identities = 43/294 (14%), Positives = 86/294 (29%), Gaps = 54/294 (18%) Query: 85 GSLAVNSRISFESYF----DQIIRKSGDFDYRKITTKHIRSGVESRKH--------TPSS 132 L+ + S+ES + + D +IT I V + P + Sbjct: 24 RGLSPKTVESYESDLTKYTNWLREARKINDVNEITQLDIEEYVRAMSSQAMSSQNLGPRT 83 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ-------FKSF 185 + + S+ K+ + +A +P V+ PK+ + ++++ F S Sbjct: 84 IARRIASIHEWNKFMLSNAQIASDPSAEVKAPKQAEHLPDVLSISEVERVIDAAGGFGST 143 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------E 236 + + R EFL +G R S++ + + ++ G + Sbjct: 144 DAVSLRDRALVEFLYATGARVSEAVGLKFEDIDLTESVVRLSGKGQKQRLVPIGKCAVRA 203 Query: 237 LPDGFMKLLAMTPIGKE------------------------TFFINNDKQKMNATQFSIW 272 L D + + F+N + ++ Sbjct: 204 LRDYLANARPILASRAQKSPATAKSRLKSPLNSSSKSANTHVIFLNKRGKSLSRQSAWEA 263 Query: 273 FKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 A + K H +R AT GA + G +V + YT Sbjct: 264 ISRAGKMAKIGKELHPHTLRHSFATHLISGGADVRTVQELLGHASVTTTQIYTH 317 >gi|291531297|emb|CBK96882.1| Site-specific recombinase XerD [Eubacterium siraeum 70/3] Length = 476 Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats. Identities = 53/316 (16%), Positives = 109/316 (34%), Gaps = 39/316 (12%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFE-SYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129 I + ++ +L + +R +E ++ II + G +++ ++ K Sbjct: 74 FGDWIDFWYQTYCRHTLRITTRTDYENRIYNHIIPEIGKILLNRLSQSDLQQFYAKEKTD 133 Query: 130 PSS----------AIQFLTSM----RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175 + + + + R + AV++ + NP + + +K ++ T Sbjct: 134 GRKLHAKTYGKGLSDRTIRGIHANCRTALQRAVQEGLIRTNPAVGCKLLPKKAREMQVLT 193 Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQ------ 227 + ++ +F E L F L +G+R + L I+ Q Sbjct: 194 QNEIIRFLHQAKEEGCYEL-FLLELGTGMRRGEILALKWSDLNFATGELRIERQVYIIKA 252 Query: 228 -------KTGTII-TVELPDGFMKLLAMTPIGKETFFI----NNDKQKMNATQFSIWFKA 275 KT I TV LP +K L ++ ++ ++ + N + + Sbjct: 253 EVIISAPKTKASIRTVILPPSLLKTLVAYKETVDSEWMFPSPTDNGRPRNPSSVRKRLQL 312 Query: 276 KATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGAD-RIRLG 332 +AG K H +R AT++ + G L AT G + + Y+ D R Sbjct: 313 ILERAGCKKVRFHDLRHTFATMALEHGMDVKTLSATIGHVSSATTLDIYSHITDTMQRQA 372 Query: 333 IKNSRRISSVVDSDDP 348 + R D+ P Sbjct: 373 AVHIDRKIGGTDAQMP 388 >gi|238789383|ref|ZP_04633169.1| Tyrosine recombinase [Yersinia frederiksenii ATCC 33641] gi|238722526|gb|EEQ14180.1| Tyrosine recombinase [Yersinia frederiksenii ATCC 33641] Length = 263 Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats. Identities = 40/240 (16%), Positives = 82/240 (34%), Gaps = 16/240 (6%) Query: 101 QIIRKSGDFDYRKITTKHIRSGVESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINP 157 +I + G ++ + +RS V K SS L+++R W V Q + NP Sbjct: 2 EIGEQMGLAHWQTLDAAQVRSLVSRSKRAGLHSSSLALRLSALRSFLDWLVSQGVLQANP 61 Query: 158 CLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQPRLAFEFLLYSGLRCSDSCRAGV 214 + P+ + +++ + + R E + +GLR S+ Sbjct: 62 AKGISTPRSGRHLPKNIDVDEVDKLLDIDLNDPLAVRDRAMLEVMYGAGLRLSELVGMNC 121 Query: 215 QHLQNNIFSIKTQKTGTI--------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNA 266 +H+ + G+ V + ++ L + + F+ N ++++A Sbjct: 122 KHVDLASGEVWVMGKGSKERKVPIGKTAVTWLEHWLALRELFEPQDDAIFLANTGKRISA 181 Query: 267 TQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 F K GV + H +R AT ++ + G + + YT Sbjct: 182 RNVQKRFAEWGVKQGVSSHIHPHKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTH 241 >gi|256821403|ref|YP_003145366.1| tyrosine recombinase XerC [Kangiella koreensis DSM 16069] gi|256794942|gb|ACV25598.1| tyrosine recombinase XerC [Kangiella koreensis DSM 16069] Length = 299 Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats. Identities = 44/273 (16%), Positives = 105/273 (38%), Gaps = 23/273 (8%) Query: 75 ISEYR-KSAHWGSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIR---SGVESRK 127 I Y + H + ++ ++ +++ +G ++++ITT+ IR + + Sbjct: 5 IQRYLNRLLHEKRYSEHTVNNYRRQLERLLAFCHDAGYSNWQQITTQDIRMLIAKRHRQG 64 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 +PSS+ L++MR ++ + ++ + +NP + V PK+ + + + F Sbjct: 65 ASPSSSALQLSAMRRFLEFLLSEKKITVNPAVGVRGPKKAKRLPKNIDVDSLNHFLDQMP 124 Query: 188 EGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT-VELPDGFM 242 E + + E L SG+R ++ + L + S++ G + V + Sbjct: 125 EDEPIEVRDKAMMELLYSSGIRLAELSAMDIDDLSFSDQSLRVLGKGNKVREVPFGNSSK 184 Query: 243 KLLA---------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRK 291 K+L+ ++ F++ ++ K G+N H +R Sbjct: 185 KVLSLWLKERNNFAKNSDEKALFLSQQGNRLTNRAIQQRLAHWGKKLGLNDRLHPHKLRH 244 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTK 324 AT ++ + + G ++ + YT Sbjct: 245 SCATHVLESSSDLRAVQELLGHASISTTQIYTH 277 >gi|289705629|ref|ZP_06502018.1| tyrosine recombinase XerD [Micrococcus luteus SK58] gi|289557653|gb|EFD50955.1| tyrosine recombinase XerD [Micrococcus luteus SK58] Length = 338 Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats. Identities = 48/314 (15%), Positives = 89/314 (28%), Gaps = 39/314 (12%) Query: 49 SALTGSTPKREYINSPRKKPTTLKWLISEYRKSAH-WGSLAVNSRISFESYFDQII---R 104 +A + R + L + + LA N+ ++ ++ Sbjct: 6 AARGSGEAEARGSRGGRGAESALAAPFRRHLEHLAVERGLAANTLAAYRRDLERYRRWLE 65 Query: 105 KSGDFDYRKITTKHIRSGVES--------RKHTPSSAIQFLTSMRVLFKWAVRQEYVAIN 156 G + H+ + + R SA + L ++R L ++ + + Sbjct: 66 AHGVRAPADVDPGHVSGFLRALGTGEDGGRPLAVRSAARVLAAVRGLHRFWALEGLTPAD 125 Query: 157 PCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAFEFLLYSGLRCSDSCRA 212 P V PK + E + G + R EFL +G R S+ Sbjct: 126 PARDVHPPKPGDRLPKALPVEQVTALLEAVPVDTPAGLRDRALLEFLYGTGARISEVVGL 185 Query: 213 GVQHL--------QNNIFSIKT-QKTGTIITVELPDGFMKLLAMT------------PIG 251 V + ++ K V + L Sbjct: 186 DVDDVVGLAQTGDDGGQPVVRLFGKGSKERVVPIGSYAAAALDAWLVRGRPTIMTGVTRS 245 Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMA 309 F+N +++ K A +AG+ + S H +R AT GA + Sbjct: 246 TPALFVNARGGRLSRQSAWAVLKRAAERAGLEADVSPHTLRHCFATHLLAGGADVRVVQE 305 Query: 310 TYGWKTVDQAETYT 323 G +V + YT Sbjct: 306 LLGHASVTTTQVYT 319 >gi|209965952|ref|YP_002298867.1| tyrosine recombinase XerD [Rhodospirillum centenum SW] gi|209959418|gb|ACJ00055.1| tyrosine recombinase XerD [Rhodospirillum centenum SW] Length = 330 Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats. Identities = 54/296 (18%), Positives = 104/296 (35%), Gaps = 35/296 (11%) Query: 85 GSLAVNSRISFESYFDQ----IIRKSGDFDYRKITTKHIRSGVESR----KHTP---SSA 133 A N+R ++ + + G + +T +R+ +E TP + Sbjct: 34 RGAAANTRDAYARDLRDVAAFLAARRGGTALDRASTDDLRAYLEHLHRDTGKTPSAGRTV 93 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-----SE 188 + L+++R +++ V + A +P ++ PK + T+ D+ E Sbjct: 94 ARRLSALRQYYRFLVSEGLRAEDPAAVLDGPKPGRSLPKILTEADVALLLEGAARRGGPE 153 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHL-QNNIFSIKTQKTGTIITVELPDGFMKLLAM 247 G + E L +GLR S+ + L ++ + K G V L + LA Sbjct: 154 GRRLTALLELLYATGLRVSELVGLPLAALTRDGRALVVRGKGGKERMVPLSQPAKEALAA 213 Query: 248 TPIGKETFFI--------------NNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVR 290 + F + + + +F K A + G++ S H +R Sbjct: 214 CLPDRPYFMVPGREARQQGLLFPSRSAAGVLTRQRFGQLMKELALEVGLDPGKVSPHVLR 273 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKNSRRISSVVDS 345 AT D GA + G + + YT A DR+R ++ ++ S Sbjct: 274 HCFATHLLDHGADLRSVQKMLGHADIGTTQIYTHVAGDRLRRTVETHHPLAKRRGS 329 >gi|126737600|ref|ZP_01753330.1| tyrosine recombinase XerD [Roseobacter sp. SK209-2-6] gi|126720993|gb|EBA17697.1| tyrosine recombinase XerD [Roseobacter sp. SK209-2-6] Length = 328 Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 40/267 (14%), Positives = 89/267 (33%), Gaps = 32/267 (11%) Query: 90 NSRISFESYFDQ-----IIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLF 144 N+ +++ R+SG ++ + ++ + ++ + L++++ ++ Sbjct: 27 NTLLAYGRDLKDAASWLFHRESGFATAQRADIEAYLIACDAEGLSRATRARRLSALKQIY 86 Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ---PRLA----FE 197 ++A + + + NP + + P R + + ++ + + + RL E Sbjct: 87 RFAFEEGWRSDNPAIQISGPGRDKKLPKTLEVIEVDRLLDAARQTGRSPEDRLRNCCLME 146 Query: 198 FLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFMKLLAM--------- 247 L +G+R S+ V + + + K G V L LA Sbjct: 147 LLYATGMRVSELVSLPVSSARGDPQMLLVLGKGGKERLVPLSPPARDALAAWLSVRDKAD 206 Query: 248 -----TPIGKETFFINNDKQ--KMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATIS 297 F + + + F + K A GV+ + H +R AT Sbjct: 207 EANRSKGHASSRFLFPSRGKAGHLTRHFFYLLIKDLAVTGGVDPEKVTPHTLRHAFATHL 266 Query: 298 ADAGATAHELMATYGWKTVDQAETYTK 324 GA + G + E YT Sbjct: 267 LANGADLRAIQTLLGHADIATTEIYTH 293 >gi|320646833|gb|EFX15703.1| Site-specific recombinase, phage integrase family protein [Escherichia coli O157:H- str. 493-89] gi|320652110|gb|EFX20447.1| Site-specific recombinase, phage integrase family protein [Escherichia coli O157:H- str. H 2687] Length = 229 Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 49/228 (21%), Positives = 83/228 (36%), Gaps = 18/228 (7%) Query: 6 RLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65 +LPP V + Y K R ES + A L K E + R Sbjct: 12 KLPPKVYPNK------YSYVWKPTSR--------ESVTLTAIEDGLAALWKKYEETVNHR 57 Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125 + T L ++ SA++ L+ ++ + + ++ G + +HIR ++ Sbjct: 58 DRAMTFGRLWEKFLASAYYSELSPRTQKDYLQHQKKLPAVFGKVLADSVKPEHIRRYMDK 117 Query: 126 RKH-TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 R + + A +SM ++ W + YV NPC V + K K T ++ Q S Sbjct: 118 RGEQSKTQANHEKSSMSRVYSWGYERGYVKANPCAGVSKFKAKNRERYV-TDKEYQAVLS 176 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232 +A E R SD + + N+ I+ KTG Sbjct: 177 VAPL--PVFIAMEIAYLCAARVSDVLSLKWEQIGNDGIFIQQGKTGKK 222 >gi|315024066|gb|EFT37068.1| Integrase, site-specific recombinase [Riemerella anatipestifer RA-YM] Length = 293 Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 45/260 (17%), Positives = 96/260 (36%), Gaps = 22/260 (8%) Query: 85 GSLAVNSRISFESYF----DQIIRKSGDFDYRKITTKHIRS---GVESRKHTPSSAIQFL 137 ++N+ S+ D + G + K IR+ + + + + L Sbjct: 15 KRYSLNTLASYSRDLQDFSDFVKETEGADTLISVDKKVIRNFVVYLSENNLSKRTINRKL 74 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ--QFKSFWSEGSQPRLA 195 +++R + + V+ ++ +P +V K E P+++++M+ Q + +L Sbjct: 75 SALRSFYIYLVKLGIISASPMETVSSLKFYGEKQIPFSQKEMENLQNLLNEEKLLLNKLI 134 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDG--------FMKLL 245 E L +G+R S+ CR ++ + N + K + + + + K Sbjct: 135 IELLYQTGMRKSELCRLALKDVDFIQNRIRV-VGKGNKMREIPISENIKRELKLYLEKER 193 Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAK--ATKAGVNKSAHGVRKFSATISADAGAT 303 T + FF+ QK+ A + KS H +R AT + GA Sbjct: 194 KPTKENLDYFFVRESGQKLTGKFVYSVVNDYLSAVTSKKKKSPHVLRHSFATHVLENGAE 253 Query: 304 AHELMATYGWKTVDQAETYT 323 ++ G ++ + YT Sbjct: 254 IAQVKEILGHASLASTQVYT 273 >gi|295133148|ref|YP_003583824.1| tyrosine type site-specific recombinase [Zunongwangia profunda SM-A87] gi|294981163|gb|ADF51628.1| tyrosine type site-specific recombinase [Zunongwangia profunda SM-A87] Length = 375 Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 48/257 (18%), Positives = 93/257 (36%), Gaps = 11/257 (4%) Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFL 137 Y +V++ ++ ++F++ I D + IR ++S S Sbjct: 110 YLLKLELKRYSVSTIKTYVTFFEKFINHYSQRDIDSLDECEIRLFLQSLIQENKSNSYIN 169 Query: 138 TSMRVL-FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF 196 ++ + F + V N +ERP+R+ + ++E++ + + R Sbjct: 170 QAINAIKFNYEVVCGM--PNRFYDMERPRREHRLPQVISREEIFAIIEN-TNNIKHRCIV 226 Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTIITVELPDGFMKLLAMTPIG--- 251 E L SGLR S+ +Q + + IK K L + + L Sbjct: 227 ELLYSSGLRRSELLNLKLQDIDSKRMLIKIKAGKGNKDRFTILSEKCLAHLRQYYRKWKP 286 Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMA 309 + F ++ + K ++KA +NK S H +R AT ++G ++ Sbjct: 287 EIYLFEGQPGKQYSGASVLKVVKNASSKAKLNKNISPHILRHSFATHLLESGVDLRKIQV 346 Query: 310 TYGWKTVDQAETYTKGA 326 G + E YT A Sbjct: 347 LLGHGSTKTTEIYTHVA 363 >gi|254508806|ref|ZP_05120917.1| tyrosine recombinase XerC [Vibrio parahaemolyticus 16] gi|219548263|gb|EED25277.1| tyrosine recombinase XerC [Vibrio parahaemolyticus 16] Length = 310 Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 39/268 (14%), Positives = 95/268 (35%), Gaps = 22/268 (8%) Query: 77 EYRKSAHWGSLAVNSRISFESYFDQIIR---KSGDFDYRKITTKHIRSGV---ESRKHTP 130 EY +S L+++++ +++ + + + + G D+ ++ + +R Sbjct: 21 EYLRSE--KGLSLHTQRNYKQQLETMAQHLVQLGLKDWSQVDSAWVRQLASKGMRDGMKA 78 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---WS 187 SS L+S+R F + + + ++ NP V P++K + +++ Q Sbjct: 79 SSLATRLSSLRSFFDFLILRGEMSANPAKGVSAPRKKRPLPKNLDVDEVGQLLEVNEDDP 138 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLL- 245 + R E + +GLR ++ V+ + I+ K V + + Sbjct: 139 LSIRDRAMMEMMYGAGLRLAELVSINVKDVSFFSGEIRVVGKGDKERKVPFSGMASEWVG 198 Query: 246 -------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATI 296 + + F++ +++ K V + S H +R AT Sbjct: 199 KWMKVRGTLAKSDEPALFVSKLGVRISHRNVQKRMAEWGQKQAVASHISPHKLRHSFATH 258 Query: 297 SADAGATAHELMATYGWKTVDQAETYTK 324 ++ + G + + + YT Sbjct: 259 VLESSNNLRAVQELLGHENISTTQIYTH 286 >gi|319401458|gb|EFV89668.1| tyrosine recombinase XerC [Staphylococcus epidermidis FRI909] Length = 296 Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 34/265 (12%), Positives = 94/265 (35%), Gaps = 20/265 (7%) Query: 85 GSLAVNSRISFESYFDQI-----IRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139 + + + S+ Q + ++ + + S + ++ + +++ Sbjct: 16 RNFSAYTLKSYHDDLVQFNNFLEREHLQLETFEYKDARNYLAFLYSNQLKRTTVSRKIST 75 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF----KSFWSEGSQPRLA 195 +R +++ + Q+ INP + + PK++ + + +E+M+ + +G + ++ Sbjct: 76 LRTFYEFWMTQDNSIINPFVQLVHPKKEKYLPQFFYEEEMEALFQTVEHDNKKGIRDKVI 135 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE--------LPDGFMKLLA 246 E L +G+R S+ ++ + N+ +K K + + + Sbjct: 136 IELLYATGIRVSELINIKLKDIDMNLPGVKVLGKGNKERFIPFGEFCRQSIERYLEEFQP 195 Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATK-AGV-NKSAHGVRKFSATISADAGATA 304 + +N + + AGV + H +R AT + GA Sbjct: 196 KQLANHDYLIVNMKGDPITERGVRYVLNDVVKRTAGVNDIHPHKLRHTFATHLLNQGADL 255 Query: 305 HELMATYGWKTVDQAETYTKGADRI 329 + + G + YT +++ Sbjct: 256 RTVQSLLGHVNLSTTGRYTHVSNQQ 280 >gi|242242534|ref|ZP_04796979.1| tyrosine recombinase XerC [Staphylococcus epidermidis W23144] gi|242233961|gb|EES36273.1| tyrosine recombinase XerC [Staphylococcus epidermidis W23144] Length = 286 Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 34/265 (12%), Positives = 93/265 (35%), Gaps = 20/265 (7%) Query: 85 GSLAVNSRISFESYFDQI-----IRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139 + + + S+ Q + ++ + + S + ++ + +++ Sbjct: 6 RNFSEYTLKSYHDDLVQFNNFLEREHLQLETFEYKDARNYLAFLYSNQLKRTTVSRKIST 65 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF----KSFWSEGSQPRLA 195 +R +++ + Q INP + + PK++ + + +E+M+ + +G + ++ Sbjct: 66 LRTFYEFWMTQNNSIINPFVQLVHPKKEKYLPQFFYEEEMEALFQTVEHDNKKGIRDKVI 125 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE--------LPDGFMKLLA 246 E L +G+R S+ ++ + N+ +K K + + + Sbjct: 126 IELLYATGIRVSELINIKLKDIDMNLPGVKVLGKGNKERFIPFGEFCRQSIERYLEEFQP 185 Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATK-AGV-NKSAHGVRKFSATISADAGATA 304 + +N + + AGV + H +R AT + GA Sbjct: 186 KQLANHDYLIVNMKGDPITERGVRYVLNDVVKRTAGVNDIHPHKLRHTFATHLLNQGADL 245 Query: 305 HELMATYGWKTVDQAETYTKGADRI 329 + + G + YT +++ Sbjct: 246 RTVQSLLGHVNLSTTGRYTHVSNQQ 270 >gi|269123142|ref|YP_003305719.1| integrase family protein [Streptobacillus moniliformis DSM 12112] gi|268314468|gb|ACZ00842.1| integrase family protein [Streptobacillus moniliformis DSM 12112] Length = 287 Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 41/275 (14%), Positives = 101/275 (36%), Gaps = 23/275 (8%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH--TPS 131 ++ + + A + S+ + +K + IT+ I +E K T + Sbjct: 4 VNSFLDYLKFEKGNADKTIESYRNDLYTFFKKV-NKKVVDITSDDIYQYIEKLKEKYTYN 62 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF---KSFWSE 188 + I+ ++S++ FK+ ++ + +P + K++ + E++ + Sbjct: 63 TVIRKISSIKSFFKFCYIEKIIKNDPANKIHNLKKEKRLPNALSVEEINSIIQSFNHEPV 122 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT--QKTGTIITVELPDGF----- 241 + +L +FL+ +G R S+ ++ ++N+ F K V + Sbjct: 123 NRRNQLIVKFLVATGARISEVINLEIKDIENSDFEFAKLYGKGSKYRFVPIYLELEKEIK 182 Query: 242 ---MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATI 296 ++ ++++ + + F A G+ K H R +AT+ Sbjct: 183 EYIREIRPKIKGSEKSYLLF---PGIRRENFWKILNKHAQNVGIEKKIHPHLFRHSTATM 239 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 + GA + G ++ E YT ++ +L Sbjct: 240 MIENGADIRIVQELLGHASITTTEVYTH-VEKSKL 273 >gi|313836787|gb|EFS74501.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL037PA2] gi|314929805|gb|EFS93636.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL044PA1] gi|314972234|gb|EFT16331.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL037PA3] Length = 315 Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 41/284 (14%), Positives = 91/284 (32%), Gaps = 27/284 (9%) Query: 68 PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSGVE 124 P +L + ++ + N+ + + GD KI T +R+ + Sbjct: 15 PASLTVPVEDFCDHLSALRRSPNTIRGYRADLIDFMGHAHSHGDDALGKIGTSQVRAWLA 74 Query: 125 SRK---HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 + +P++ + ++ RV F+WA + + +P ++ + + Sbjct: 75 DTRLAGASPATMQRRWSAARVFFRWAANEGLIDCDPTAALTSANVPKRLPATLGVDQARH 134 Query: 182 FKSFW---------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGT 231 +G++ E L GLR + C + + + + I T K Sbjct: 135 ILDGAVAQARSDETPQGARDAAILEVLYGGGLRVGELCGLDLGDVDRSRQTVIVTGKGDK 194 Query: 232 IITVELPDGFMKLLA---------MTPIGKETFFINNDKQKMNATQFSIWFKAKATK--A 280 TV + + + P + F+ +++ A Sbjct: 195 ERTVPMGTPALHAIDTWLPRRAEWAGPDSGQALFLGARGGRIDQRVVRRVVHAHMRSEPD 254 Query: 281 GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 + HG+R AT + GA + G +++ + YT Sbjct: 255 SPDLGPHGLRHAMATHLLEGGADLRTVQDILGHESLATTQIYTH 298 >gi|290894169|ref|ZP_06557140.1| integrase/recombinase XerC [Listeria monocytogenes FSL J2-071] gi|290556299|gb|EFD89842.1| integrase/recombinase XerC [Listeria monocytogenes FSL J2-071] gi|313609074|gb|EFR84788.1| tyrosine recombinase XerC [Listeria monocytogenes FSL F2-208] Length = 300 Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 39/283 (13%), Positives = 98/283 (34%), Gaps = 27/283 (9%) Query: 67 KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK------ITTKHIR 120 + L+ +Y S + +VN+ ++E+ R + + + Sbjct: 3 QEGKLEQQFLDYLHSER--NYSVNTSTAYENDLLDFRRFLNEQAIETYQQVTFLDVRIYL 60 Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 + ++ + + ++ + ++S+R + + +R+ + NP V K + + + E+M+ Sbjct: 61 TELKQKSFSRTTVARKISSLRSFYTFLLRENVITENPFTYVSHAKNQLRLPKFFYSEEME 120 Query: 181 Q-----FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIIT 234 ++ + + R+ E L +G+R S+ + L + +I K Sbjct: 121 ALFQVVYEDNETLTLRDRVLLEVLYGTGIRVSECAGILLPDLDTSYQAILIRGKGNKERY 180 Query: 235 VEL-----------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283 V +L+ + +N+ + +KA + Sbjct: 181 VPFGVYAEDAITDYLPKRTELMTRYKKSHDALLVNHYGDPLTTRGIRYCLTKIISKASLT 240 Query: 284 KS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 + H +R AT + GA + G ++ + YT Sbjct: 241 RKIHPHMLRHTFATDLLNNGADMRTVQELLGHASLSSTQIYTH 283 >gi|206895374|ref|YP_002247059.1| tyrosine recombinase XerC [Coprothermobacter proteolyticus DSM 5265] gi|206737991|gb|ACI17069.1| tyrosine recombinase XerC [Coprothermobacter proteolyticus DSM 5265] Length = 286 Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 47/285 (16%), Positives = 103/285 (36%), Gaps = 15/285 (5%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130 L++++ + + ++ ++ Q + D + + + + P Sbjct: 6 WAELLNQFLNTLEASGYSEHTLKAYYVDLKQYFMFTTSLDQKTVD--DYLMHLSRKGMAP 63 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---WS 187 +S +FL+S+R + +Q Y P + + K + R ++D+ + Sbjct: 64 TSLNRFLSSLRKFCSFLKKQGYEM--PIMELSGFKTGLKVPRVVLRDDISKLLELPENTP 121 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLA 246 + + FLL +G R S++ V+ + S + K TV +P +KLL Sbjct: 122 IELRDKALVWFLLGTGTRISEALSLKVEDIDFRTASCQVLGKGNKKRTVYIPSKALKLLK 181 Query: 247 MTP----IGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADA 300 + + F+N Q + + K G+ H +R AT + Sbjct: 182 RYIEVFNLTEGPLFLNMQGQGLTDRGARYILHKISKKYGLRDLVHPHTLRHTFATNLLEE 241 Query: 301 GATAHELMATYGWKTVDQAETYTKGADR-IRLGIKNSRRISSVVD 344 GA E+ G ++ + YT + ++ I+ R+ + Sbjct: 242 GANLREIQELLGHSSLRSTQIYTHVSPVMVKEAIEAMRKEAKNKP 286 >gi|148552940|ref|YP_001260522.1| phage integrase family protein [Sphingomonas wittichii RW1] gi|148498130|gb|ABQ66384.1| phage integrase family protein [Sphingomonas wittichii RW1] Length = 301 Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 51/269 (18%), Positives = 93/269 (34%), Gaps = 20/269 (7%) Query: 75 ISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133 I+++ + A G A N+ +++ S G T G E + +S Sbjct: 7 IAQFLEMLAAEGGAARNTLLAYGSDLRGASELLGGGLVGADTAGLQTLGGEWMALSRTSV 66 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193 + + +R F + + +P ++ RP + R + D+++ E + R Sbjct: 67 ARKASVLRRFFAFLEEEGIRRDDPSDALPRPAVQRALPRTLSHGDIERLFDTLEERRRDR 126 Query: 194 LA----------FEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIITVELPDGFM 242 A E L SGLR ++ L+ + F I K G V + D Sbjct: 127 HADPLTLRLIALVELLYGSGLRATELVSLPRHALRGDRPFLILRGKGGRERLVPISDRAR 186 Query: 243 ----KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSAT 295 + A P + F + ++ + + A +AG+ S H +R AT Sbjct: 187 MAVAEWGAHVPTDQPWLFPSGHG-HLSRVRLFQLVRELAAEAGIPPQRISPHVLRHAFAT 245 Query: 296 ISADAGATAHELMATYGWKTVDQAETYTK 324 + GA L G + + YT Sbjct: 246 HLLEGGADLRALQTMLGHADIATTQIYTH 274 >gi|226525271|gb|ACO70871.1| integrase family protein [uncultured Verrucomicrobia bacterium] Length = 294 Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 39/262 (14%), Positives = 90/262 (34%), Gaps = 23/262 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK----HTPSSAIQFLTSM 140 +++ + +++ + + D +++ +T H R + + P+ + F ++ Sbjct: 17 RNVSPRTLTNYQHALSEFRKAMPDANWKTLTADHFRRYLFAMAKREMSKPTQRLHF-AAL 75 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM-QQFKSFWSE----------G 189 R +K+ V + + NP V+ PK + T + + + ++ Sbjct: 76 RTFYKYLVERHGLETNPLKQVQLPKLDRKLPVVLTAKQVVELLEAPLKVDKQKQAPVWMP 135 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-----ELPDGFMKL 244 + E SGLR ++ V L S++ G V K Sbjct: 136 FRDAAIMELFYSSGLRLAELVGLNVADLDVYTESVRVIGKGRKERVVPVGQPALLAVQKY 195 Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGA 302 + FI+ + ++ + + + + N + H +R AT D GA Sbjct: 196 RQEAKVHVGPLFISKLRTRLTPMRVWLVIQRYLPHTSIPVNVTPHKLRHSFATHLLDHGA 255 Query: 303 TAHELMATYGWKTVDQAETYTK 324 + + G ++ + YT Sbjct: 256 DLRAVQSLLGHASLSTTQIYTH 277 >gi|239636270|ref|ZP_04677272.1| tyrosine recombinase XerC [Staphylococcus warneri L37603] gi|239597625|gb|EEQ80120.1| tyrosine recombinase XerC [Staphylococcus warneri L37603] Length = 297 Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 39/262 (14%), Positives = 99/262 (37%), Gaps = 20/262 (7%) Query: 88 AVNSRISFESYF----DQIIRKSGDF-DYRKITTKHIRSGVESRKHTPSSAIQFLTSMRV 142 + ++ S+ D + ++S D D+ ++ S + S+ ++ + ++++R Sbjct: 19 SDHTLKSYHDDIVQFNDFLYQESLDLNDFEYKDARNYLSFLYSKNLKRTTVSRKISTLRT 78 Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRLAFEF 198 +++ + Q+ +NP + + PK++ + + +E+M+ +G + ++ E Sbjct: 79 FYEYWMTQDESVVNPFVQLVHPKKEQYLPQFFYEEEMEALFKTVDTDSKKGMRDKVILEL 138 Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE--------LPDGFMKLLAMTP 249 L +G+R S+ Q L + +K K + + + + Sbjct: 139 LYATGIRVSELVHIKTQDLDMKLPGVKVLGKGNKERFIPFGEFCKQSIERYLKEFKPLKH 198 Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKA-GV-NKSAHGVRKFSATISADAGATAHEL 307 + + +N Q + + GV N H +R AT + GA + Sbjct: 199 VDHDYLIVNMQGQPITERGVRYVLNDVVKRTSGVTNIHPHKLRHTFATHLLNQGADLRTV 258 Query: 308 MATYGWKTVDQAETYTKGADRI 329 + G + YT +++ Sbjct: 259 QSLLGHVNLSTTGKYTHVSNQQ 280 >gi|262172887|ref|ZP_06040565.1| tyrosine recombinase XerC [Vibrio mimicus MB-451] gi|261893963|gb|EEY39949.1| tyrosine recombinase XerC [Vibrio mimicus MB-451] Length = 310 Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 35/268 (13%), Positives = 90/268 (33%), Gaps = 22/268 (8%) Query: 77 EYRKSAHWGSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIRSGV---ESRKHTP 130 Y S L++ ++ +++ + + + + G + ++ +R V + + Sbjct: 22 AYLHSE--KGLSLYTQRNYKQQLETMARYLAQMGLTSWPQLDAAWVRQLVVLGKRQGMKA 79 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---WS 187 SS L+S+R + + + + NP V P+++ + ++M Q Sbjct: 80 SSISTRLSSLRSFLDFLILRGELQANPAKGVSAPRKQRPLPKNLDVDEMAQLLEVSDDDP 139 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVE-------LP 238 + R E + SGLR ++ V+ + ++ + + + Sbjct: 140 LSIRDRAIMELMYGSGLRLAELVSIDVKDVNLRDGEIRVIGKGNKERKVWFAGQAQEWVG 199 Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATI 296 + + F++ +++ K V + S H +R AT Sbjct: 200 KWLKLRSQLANSDETALFVSKLGTRISHRSVQKRMAEWGQKQAVASHISPHKLRHSFATH 259 Query: 297 SADAGATAHELMATYGWKTVDQAETYTK 324 ++ + G + + + YT Sbjct: 260 MLESSNNLRAVQELLGHENIATTQIYTH 287 >gi|34497827|ref|NP_902042.1| integrase/recombinase XerC [Chromobacterium violaceum ATCC 12472] gi|81655548|sp|Q7NVH1|XERC_CHRVO RecName: Full=Tyrosine recombinase xerC gi|34103683|gb|AAQ60044.1| integrase/recombinase XerC [Chromobacterium violaceum ATCC 12472] Length = 299 Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 41/266 (15%), Positives = 89/266 (33%), Gaps = 18/266 (6%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV---ESRKHTPS 131 I + + + ++ ++ + + + R T +R + ++ + Sbjct: 5 IRRFIEHLAVAGRSPHTLAAYRADIELLENMMQAKSARDATAAELRKALAKLHAQGLSSR 64 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW----TKEDMQQFKSFWS 187 S + L+S R + W R NP + PKR + T + + + Sbjct: 65 SLARRLSSWRQFYHWLQRNGEREDNPAAGLYAPKRDKLLPKALPVDGTAALLDRIEGESE 124 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLL 245 ++ R FE + GLR S++ + + +++ I+ K G V + M L Sbjct: 125 LDARDRAIFELVYSCGLRLSETVALNLDDVDFSDSLLRIR-GKGGKERLVPIGAEAMLRL 183 Query: 246 AM------TPIGKETFFINNDKQKMNATQFSIWFKAKATK--AGVNKSAHGVRKFSATIS 297 + + F+ ++ Q + A K AG + H +R A+ Sbjct: 184 RTWLGERSAGMDEPALFLGRHGHRLGGRQVEKRLRDWAIKTGAGQHVHPHMLRHSFASHM 243 Query: 298 ADAGATAHELMATYGWKTVDQAETYT 323 + + G + + YT Sbjct: 244 LQSSGDLRAVQELLGHANLSSTQIYT 269 >gi|168702311|ref|ZP_02734588.1| codV [Gemmata obscuriglobus UQM 2246] Length = 345 Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 53/312 (16%), Positives = 98/312 (31%), Gaps = 17/312 (5%) Query: 23 YYFR-KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKS 81 +Y R +G + + A L + P P + + S Sbjct: 16 WYVRFEGKLTSLGVKGKGNQEAAKAAFEKLRTTPKPPPITAGPVLLPQAFAQFLVACKLS 75 Query: 82 AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMR 141 N+ +E + + ++T HIR + ++ L S+ Sbjct: 76 -----RKPNTVARYEYDAGDFVNDHPTLEPAQVTADHIRQWLADLDVGQTTKAIMLRSVS 130 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW-TKEDMQQFKSFWSEGSQPRLAFEFLL 200 F W V+++ + NP V RPK + + ++ D ++ S + L Sbjct: 131 AFFGWLVKEDKLEKNPVKKVTRPKTASRSDKALISEADHKRLLEGASRDFRD--VLVVLH 188 Query: 201 YSGLRCSDSCRAGVQ--HLQNNIFSIKTQK---TGTIITVELPDGFMKLLAMTPIGKET- 254 +G R + + + + ++ + I K TG V L LL + T Sbjct: 189 GTGCRPGELQQITAETFNYKDRVVVITEHKTDHTGKPRPVYLTPELADLLHSKLVKYPTG 248 Query: 255 -FFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGW 313 N + K K GV A+G R T +G + ++ A G Sbjct: 249 PLLRGNKGVPWTGRAITESMKKLRKKTGVKAIAYGYRHTFVTDGLKSGLSNSQVAALVGH 308 Query: 314 KTVDQAET-YTK 324 T + Y+ Sbjct: 309 TTTAVIDRFYSH 320 >gi|328954140|ref|YP_004371474.1| Tyrosine recombinase xerC [Desulfobacca acetoxidans DSM 11109] gi|328454464|gb|AEB10293.1| Tyrosine recombinase xerC [Desulfobacca acetoxidans DSM 11109] Length = 310 Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 48/266 (18%), Positives = 95/266 (35%), Gaps = 26/266 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIRSGVESRKHT--PSSAIQFLT 138 SLA ++ ++ S Q + ++T + +R+ + R +S + L Sbjct: 28 RSLAAHTVRNYLSDIGQFMEFWNYRRPGHSLGELTYQDLRAFLAERHRLNCKTSIARKLA 87 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----QQFKSFWSEGSQPRL 194 ++R K+ RQ ++ N PK + + T +++ +Q + R Sbjct: 88 ALRTFCKFLTRQGLLSHNIAALTPTPKLEARLPKFLTIDEVFHLLEQTWGQTVLAVRDRA 147 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIITVELPDGFMKLLA------- 246 E GLR ++ + +L + K G V + ++ L Sbjct: 148 ILELFYSGGLRVAELVGLNLDNLDLPQHLAKVRGKGGKERLVIIGRQALQTLNSYLLVRR 207 Query: 247 --MTP----IGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISA 298 +TP G+E F+N ++ + + + A KAG+ S HG+R AT Sbjct: 208 ELITPDSPVSGREAVFLNYRGGRLTSRSVARLVEKWAIKAGLGQPLSPHGLRHTFATHLL 267 Query: 299 DAGATAHELMATYGWKTVDQAETYTK 324 + A + G + + Y Sbjct: 268 EGKADLRAVQELLGHAQLSTTQKYLH 293 >gi|15609783|ref|NP_217162.1| integrase [Mycobacterium tuberculosis H37Rv] gi|15842187|ref|NP_337224.1| phage integrase family protein [Mycobacterium tuberculosis CDC1551] gi|148662487|ref|YP_001284010.1| phage integrase family protein [Mycobacterium tuberculosis H37Ra] gi|148823839|ref|YP_001288593.1| integrase [Mycobacterium tuberculosis F11] gi|167966927|ref|ZP_02549204.1| hypothetical integrase [Mycobacterium tuberculosis H37Ra] gi|215404613|ref|ZP_03416794.1| integrase [Mycobacterium tuberculosis 02_1987] gi|215412442|ref|ZP_03421188.1| integrase [Mycobacterium tuberculosis 94_M4241A] gi|215446906|ref|ZP_03433658.1| integrase [Mycobacterium tuberculosis T85] gi|253798270|ref|YP_003031271.1| integrase [Mycobacterium tuberculosis KZN 1435] gi|254365312|ref|ZP_04981357.1| hypothetical integrase [Mycobacterium tuberculosis str. Haarlem] gi|254551701|ref|ZP_05142148.1| integrase [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|289553565|ref|ZP_06442775.1| integrase [Mycobacterium tuberculosis KZN 605] gi|289746449|ref|ZP_06505827.1| integrase [Mycobacterium tuberculosis 02_1987] gi|289758776|ref|ZP_06518154.1| phage integrase [Mycobacterium tuberculosis T85] gi|294994258|ref|ZP_06799949.1| integrase [Mycobacterium tuberculosis 210] gi|297635258|ref|ZP_06953038.1| integrase [Mycobacterium tuberculosis KZN 4207] gi|297732254|ref|ZP_06961372.1| integrase [Mycobacterium tuberculosis KZN R506] gi|298526121|ref|ZP_07013530.1| hypothetical integrase [Mycobacterium tuberculosis 94_M4241A] gi|306785454|ref|ZP_07423776.1| integrase [Mycobacterium tuberculosis SUMu003] gi|307085338|ref|ZP_07494451.1| integrase [Mycobacterium tuberculosis SUMu012] gi|313659587|ref|ZP_07816467.1| integrase [Mycobacterium tuberculosis KZN V2475] gi|1550687|emb|CAB02354.1| PROBABLE INTEGRASE [Mycobacterium tuberculosis H37Rv] gi|13882474|gb|AAK47038.1| phage integrase family protein [Mycobacterium tuberculosis CDC1551] gi|134150825|gb|EBA42870.1| hypothetical integrase [Mycobacterium tuberculosis str. Haarlem] gi|148506639|gb|ABQ74448.1| phage integrase family protein [Mycobacterium tuberculosis H37Ra] gi|148722366|gb|ABR06991.1| hypothetical integrase [Mycobacterium tuberculosis F11] gi|253319773|gb|ACT24376.1| integrase [Mycobacterium tuberculosis KZN 1435] gi|289438197|gb|EFD20690.1| integrase [Mycobacterium tuberculosis KZN 605] gi|289686977|gb|EFD54465.1| integrase [Mycobacterium tuberculosis 02_1987] gi|289714340|gb|EFD78352.1| phage integrase [Mycobacterium tuberculosis T85] gi|298495915|gb|EFI31209.1| hypothetical integrase [Mycobacterium tuberculosis 94_M4241A] gi|308329877|gb|EFP18728.1| integrase [Mycobacterium tuberculosis SUMu003] gi|308365129|gb|EFP53980.1| integrase [Mycobacterium tuberculosis SUMu012] gi|323718760|gb|EGB27919.1| integrase [Mycobacterium tuberculosis CDC1551A] gi|326904260|gb|EGE51193.1| integrase [Mycobacterium tuberculosis W-148] gi|328458042|gb|AEB03465.1| integrase [Mycobacterium tuberculosis KZN 4207] Length = 332 Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 47/285 (16%), Positives = 95/285 (33%), Gaps = 10/285 (3%) Query: 44 IPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII 103 + A+++A S K P + + I +Y + + + ++ Sbjct: 46 VEAFLAA-AKSQNKPPGPPPSLHAPPSWRRDIDDYLLNLNAAGQRPATIRLRKTVLCAAA 104 Query: 104 RKSGDFDYRKITTKHIRSGVESRKH-TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE 162 G +T +H+ + ++H +P + +++R F WA + V S+ Sbjct: 105 HGLG-RPPADVTAEHLLDWLGKQQHLSPEGRKTYRSTLRGFFVWAYEMDRVRDYVADSLP 163 Query: 163 RPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222 + + + RP + Q + + L +GLR +++ +A L + Sbjct: 164 KVRCPKQPPRPAGDDVWQAALAKADR--RIELMIRLAGEAGLRRAEAAQAHTGDLMDGGL 221 Query: 223 SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282 + K G V + D L+ TP G F N + A Sbjct: 222 LLVHGKGGKRRIVPISDYLAALIRDTPHG--YLFPNGTGGHLTAEHVGKLVSRALPG--- 276 Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 + + H +R AT + + G ++ E YT D Sbjct: 277 DATMHTLRHRYATRAYRGSHNLRAVQQLLGHASIVTTERYTALCD 321 >gi|298528636|ref|ZP_07016040.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1] gi|298512288|gb|EFI36190.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1] Length = 414 Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 54/320 (16%), Positives = 104/320 (32%), Gaps = 22/320 (6%) Query: 44 IPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII 103 + A K + I S TT + +Y ++ + Y I Sbjct: 83 MENVRRAEDIKLKKEQEIAS-----TTFNIIWEKYFLNSQHEKAYKSWDTERHLYKKWIQ 137 Query: 104 RKSGDFDYRKITTKHIRSGVESRKH---TPSSAIQFLTSMRVLFKWAVRQEYVA-INPCL 159 G+ + K+T H+ + + +P S L+ +R +F +A ++P Sbjct: 138 PFIGEVFFTKVTAFHLEKIKKEMRDASLSPRSIGYALSVVRQVFCYASDHGIFEGVDPVS 197 Query: 160 SVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP-RLAFEFLLYSGLRCSDSCRAGVQHLQ 218 V+ P IR T + + SQ L+ G R + Q + Sbjct: 198 LVKMPHYDNRRIRFLTHSEAEILLDVLCFSSQNTHDIALIALHCGPRAGEIFSLTWQDID 257 Query: 219 --NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAK 276 + + + K + + + K+L + + + D+ + S F+ Sbjct: 258 FSQGLVTFRDTKNKYVRHIPITKRVRKMLERRSDDRSSALVFPDRNGGRRKKVSKAFERT 317 Query: 277 ATKAGVNKSA---------HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA- 326 + G NK H +R A+ AG + + G K + Q E Y A Sbjct: 318 IKELGWNKGIDDPRQKVVFHTLRHTCASWLVMAGVPLYTVKEYLGHKQISQTERYAHLAP 377 Query: 327 DRIRLGIKNSRRISSVVDSD 346 D ++ + +I+S Sbjct: 378 DSLKQATEALNKINSHKSEP 397 >gi|329923290|ref|ZP_08278774.1| phage integrase, N-terminal SAM domain protein [Paenibacillus sp. HGF5] gi|328941382|gb|EGG37674.1| phage integrase, N-terminal SAM domain protein [Paenibacillus sp. HGF5] Length = 311 Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 45/296 (15%), Positives = 102/296 (34%), Gaps = 32/296 (10%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133 L Y K + A +++ ++ + ++T + + + + + A Sbjct: 16 LFLSYMKDREY---AKDTQQAYLHDIKHFLNSLEGKPITEVTDIDVMYYLTQVRESGAGA 72 Query: 134 ---IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE-----GIRPWTKEDMQQFKSF 185 + +++R+ +K +R + +INP + +E+ K + +P + + Sbjct: 73 RYRNRCQSAIRLFYKVMIRFKLASINPAMDIEKAKVEKNRQPTYLQKPILDACLNGIEGR 132 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKL 244 + + + Y+GLR S+ + + SI K + LP KL Sbjct: 133 YKI--RDVTIIALMAYAGLRVSEIVKLNLSDFDMENSSIAVLGKGNKWRYIPLPAELNKL 190 Query: 245 LA--------MTPIGKETFFINNDKQKMNA--------TQFSIWFKAKATKAGVNKSAHG 288 L FF++ +++++ F + +G + SAH Sbjct: 191 LHMYLEERMVPRSTKDNAFFVSQFRRRISKRMVQTIAEKTFEAMTEQFPQLSGQSLSAHK 250 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344 +R AT GA + G + + + YT D + + +I + Sbjct: 251 LRHSFATELLRNGADLRAVQELLGHEDISTTQIYTHVLDETK--ERAMNKIRPAIP 304 >gi|163783234|ref|ZP_02178228.1| Phage integrase [Hydrogenivirga sp. 128-5-R1-1] gi|159881568|gb|EDP75078.1| Phage integrase [Hydrogenivirga sp. 128-5-R1-1] Length = 369 Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 56/325 (17%), Positives = 118/325 (36%), Gaps = 27/325 (8%) Query: 17 RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76 + G+ Y +R P ++ + P + + Sbjct: 8 KKGRRYYVVIPIGHKRKWFPAGTTKREAEKVLAEKLAELNAGSSVLPPEVR---FSFFCE 64 Query: 77 EYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESR--KHTPSSA 133 E+ GS+ ++ +E + + + GD +ITT ++ V R + +P++ Sbjct: 65 EWLSKYAKGSVKPSTFRRYEGIIRNHFMPRFGDKKLSRITTGMLQGYVAERLSQVSPTTV 124 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193 +Q + ++ +FK A Y+ NP +++RP+R+ + I T E+++ R Sbjct: 125 LQEVVLLKEMFKHAQSWGYIKHNPAQNLQRPRREKKEIDILTPEEVEFLLENT--HEHYR 182 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQ---------KTGTII-TVELPDGF 241 +AF + +GLR + + + ++ K+ I V++PD Sbjct: 183 VAFLTAVMTGLRAGELWGLKWDDIDWHSKQIYVRRTLWNGEFHTPKSRHSIGKVDMPDVL 242 Query: 242 MKLL-----AMTPIGKETFFINNDKQKMNATQFSIW-FKAKATKAGVN-KSAHGVRKFSA 294 ++ L P F + + FK +AG+ S H +R +A Sbjct: 243 VEELKLWEIRCPPNKYNLVFPSPKGEPSEHQNVVNRYFKPALRRAGLRVVSFHSLRHTNA 302 Query: 295 TISADAGATAHELMATYGWKTVDQA 319 +I AG + G +++ Sbjct: 303 SIRIRAGQNIKYIQRQLGHASINTT 327 >gi|149194209|ref|ZP_01871307.1| Phage integrase [Caminibacter mediatlanticus TB-2] gi|149136162|gb|EDM24640.1| Phage integrase [Caminibacter mediatlanticus TB-2] Length = 268 Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 41/247 (16%), Positives = 97/247 (39%), Gaps = 12/247 (4%) Query: 88 AVNSRISFESYFDQIIRKSG-DFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKW 146 ++ + ++E+ + + + + IT + S+K + + ++ +R F + Sbjct: 21 SLQTHRTYENVLKEALNFIELESNIIDITPYRLHIANLSKK----TIAKKVSVLRSFFDF 76 Query: 147 AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRC 206 ++ Y + E K +P + E++++ LA + GLR Sbjct: 77 LKQEGYKFK--IVGDEHIKVPKTLPKPISLENIKEALKV--ANMDEYLAIIVIFSLGLRI 132 Query: 207 SDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM--TPIGKETFFINNDKQKM 264 S++ + + + IK + T I + L + + K+ + D +K Sbjct: 133 SEALNIKLSDIHGDWIEIKGKGNKTRI-LPLHPKLKEFIQKYLKINPKKEYLFEKDGKKY 191 Query: 265 NATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 + Q + K G++ + H +R AT D GA +++ G + + + YTK Sbjct: 192 SENQLRYNIQKAFKKIGIHATPHQLRHSFATYMLDKGARINDVSELLGHEFISTTQIYTK 251 Query: 325 GADRIRL 331 ++ ++L Sbjct: 252 LSNSLKL 258 >gi|240170150|ref|ZP_04748809.1| site-specific tyrosine recombinase XerD [Mycobacterium kansasii ATCC 12478] Length = 313 Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 45/274 (16%), Positives = 84/274 (30%), Gaps = 35/274 (12%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS----GVESRKHTPSS-------- 132 +A N+ S+ + + D + V R+ P S Sbjct: 21 RGVAANTLSSYRRDLRRYTKHLEDRGITDLAAVGEDDVSDFLVALRRGDPDSGATALAAV 80 Query: 133 -AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----- 186 A + L ++R L ++A + ++ +V P + T + + Sbjct: 81 SAARALIAVRGLHRFAAAEGLAELDVARAVRPPTPGRRLPKSLTVDQVLALLEGAGGDNP 140 Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFM 242 + R E L +G R S++ V + + + K G V + + Sbjct: 141 ADGPLTLRNRALLELLYSTGSRISEAVGLDVDDVDTHARSVLLRGKGGKQRLVPVGRPAV 200 Query: 243 KLL-----------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289 L A G F+N +++ + A AG+ S H + Sbjct: 201 HALDAYLVRGRPDLARRGRGTAAIFLNARGGRLSRQSAWQVLQDAAECAGITAGVSPHML 260 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYT 323 R AT + GA + G +V + YT Sbjct: 261 RHSFATHLLEGGADVRVVQELLGHASVTTTQIYT 294 >gi|311745481|ref|ZP_07719266.1| tyrosine recombinase XerD [Algoriphagus sp. PR1] gi|126578034|gb|EAZ82254.1| tyrosine recombinase XerD [Algoriphagus sp. PR1] Length = 294 Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 37/286 (12%), Positives = 97/286 (33%), Gaps = 26/286 (9%) Query: 74 LISEYRKSAHWGSLAVN-----SRISFESYFDQIIRKSGDFDYRKITTKHIRSG---VES 125 +I + + + + R E + + + G+ D + IR+ + Sbjct: 1 MIDSFINYLEFEKKSSSHTVLAYRKDLEQFLEFVSVSFGEEDILFVGHSEIRAWVIDLVE 60 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM-----Q 180 + + ++ + + ++R +K+ +R ++ +P ++ K + + + + Sbjct: 61 NQLSTTTVNRKIATLRSYYKFLLRSRVISKDPTYKLKSLKNPKKLPEFLQELTISSVLEE 120 Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPD 239 EG + ++ EFL +G+R S+ + + +K K + L + Sbjct: 121 SVYEENFEGQRDKMVLEFLYLTGVRLSELTGLKWGDINLSEKVVKVLGKRKKERIIPLTN 180 Query: 240 GFMKLLAMTP----------IGKETFFINNDKQKMNATQFSIWFKAKATK-AGV-NKSAH 287 G + + + F ++N+ + + A +S H Sbjct: 181 GLARNIISYQKVFEERFSKVSQSDYFIVSNNGKPSYPMMIYRVVRKYLDIFAQTSKRSPH 240 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 +R AT + GA + + G + + YT + + Sbjct: 241 VLRHTFATHLLNKGADLNAVKDLLGHSNLAATQVYTHNSLEKLKAV 286 >gi|270308830|ref|YP_003330888.1| site-specific recombinase, phage integrase family [Dehalococcoides sp. VS] gi|270154722|gb|ACZ62560.1| site-specific recombinase, phage integrase family [Dehalococcoides sp. VS] Length = 385 Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 51/323 (15%), Positives = 102/323 (31%), Gaps = 47/323 (14%) Query: 49 SALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSG 107 L ++ + + TT+ + + ++ + A + + + G Sbjct: 44 KELAALINRKNNGSFVKPTKTTVGTFLESWLETYASCNTAPRTFERYSQIVRLHLTPNLG 103 Query: 108 DFDYRKITTKHIRSGVESR---------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPC 158 + ++ +HI++ + + + AV+ +A N Sbjct: 104 RIELTQLRPEHIQAYYSKALSGGRVSGGGLSAQTVKHHHRVLSEALNHAVKWGLLARNVA 163 Query: 159 LSVERPKRKTEGIRPWTKEDMQQFKSFWSE-----GSQPRLAFEFLLYSGLRCSDSCRAG 213 ++V+ P+ + + EDM ++ G L F L++G+R + Sbjct: 164 MAVDPPRPEKREMHTIAPEDMSVLFEEAAKMEKNSGLPYELIFMTALHTGMRRGEILALR 223 Query: 214 VQHLQ----------------NNIFSIKTQKT-GTIITVELPDGFMKLL----------- 245 + N I+ KT G+ V + ++ L Sbjct: 224 WSDIDLAKSKIYVRCSLQCLKNGEIIIREPKTPGSRRLVSMTPSLLEKLIIHKESSSANM 283 Query: 246 ---AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGA 302 T G F + D +N S F A +AG+N H +R AT+ AG Sbjct: 284 ILQGKTLQGDSLVFAHFDGTPINPNTVSPAFAKIAKRAGLNLRLHDLRHSHATLMLTAGV 343 Query: 303 TAHELMATYGWKTVD-QAETYTK 324 + G TV +TY+ Sbjct: 344 HPKIVSERLGHSTVAFTLDTYSH 366 >gi|329297033|ref|ZP_08254369.1| site-specific tyrosine recombinase XerC [Plautia stali symbiont] Length = 303 Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 37/259 (14%), Positives = 82/259 (31%), Gaps = 19/259 (7%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRK---ITTKHIRSGVESRKHTPSSAIQF---LT 138 L+ ++ +++ +I + D + +RS + A ++ Sbjct: 22 RQLSPLTQKNYQRQLQALIAMADDMHITAWSQLEPAQVRSLAARSRRGGLGASSLALRMS 81 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE---GSQPRLA 195 ++R W V Q ++ NP + P+ + +++ Q + + R Sbjct: 82 ALRSFLDWQVSQGMLSANPAKGIATPRNARHLPKNMDVDEVSQLLDIDLDDPLAVRDRAM 141 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVEL-------PDGFMKLLAM 247 E + GLR ++ +HL K V + ++ L Sbjct: 142 LETMYGGGLRLAELVGIDCRHLDLESGEVWVRGKGSKERRVPIGGTAVTWLQHWLPLRNS 201 Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAH 305 + F++ +++A F K GV + H +R AT ++ Sbjct: 202 FAPQDDAVFVSTRGSRISARNVQKRFAEWGIKQGVASHIHPHKLRHSFATHLLESSGDLR 261 Query: 306 ELMATYGWKTVDQAETYTK 324 + G + + YT Sbjct: 262 AVQELLGHVNLSTTQIYTH 280 >gi|296162695|ref|ZP_06845481.1| integrase family protein [Burkholderia sp. Ch1-1] gi|295887083|gb|EFG66915.1| integrase family protein [Burkholderia sp. Ch1-1] Length = 339 Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 40/260 (15%), Positives = 82/260 (31%), Gaps = 36/260 (13%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLF 144 L + +++ Y ++ G + T + LT +R Sbjct: 76 QELTRSVLEAYQRYLYLYRKQDG------------------KPLTIRTQQTMLTPLRGWC 117 Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRP-WTKEDMQQFKSFWSEG----SQPRLAFEFL 199 +W R+ +V N + P+ + + +++ G ++ R E L Sbjct: 118 RWLSRERHVQYNAAAELVLPRAPKLLPKVVLSVVQVERLMDQPDVGGLTGARDRAILEVL 177 Query: 200 LYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLA----------M 247 +G+R + V + I+ K + L + + Sbjct: 178 YSTGMRRMELIGLTVSDIDLSGGTVMIRQGKGRRDRYIPLGERACYWVEWYCDQIRPSLA 237 Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA-HGVRKFSATISADAGATAHE 306 + T F+ + + + S K AG+ + A H +R AT + GA Sbjct: 238 VRADEWTLFLTDYGEPFGKGRLSDLVKRYMEMAGIREGACHVLRHACATHMLENGADIRF 297 Query: 307 LMATYGWKTVDQAETYTKGA 326 + A G + + YT+ A Sbjct: 298 IQALLGHADLSSTQIYTQVA 317 >gi|227358498|ref|ZP_03842823.1| integrase [Proteus mirabilis ATCC 29906] gi|227161209|gb|EEI46283.1| integrase [Proteus mirabilis ATCC 29906] Length = 316 Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 51/313 (16%), Positives = 101/313 (32%), Gaps = 16/313 (5%) Query: 17 RHGKIIYYFR-KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP-TTLKWL 74 R G IYY+R + + A + L PK ++ TL Sbjct: 2 RKG--IYYYRDVRTKKEFSVGSNKSLAITEAIQANLAIYKPKEPLVDRINNVHCVTLHEW 59 Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134 + YR + L + +ES I D +T + + + + + A Sbjct: 60 LDTYRGKVNSRGLKEKTLYDYESRIKLIKLHFNDCPIENVTPRDVATFISEYPKK-AMAK 118 Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194 ++M F A+ + NP + PK + R + E+ + + + R Sbjct: 119 LLRSTMLDAFNEAIADGVIKENPVSVTKPPKTSVQRSR-LSLEEFK--YALEHTNDKYRH 175 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET 254 F + R SD ++N+ + KTG+ + + L + I Sbjct: 176 MFLLAALTAQRISDIINMKWDDIKNDRLYVTQIKTGSKVAIPLSLRLESIGYS--IKDVL 233 Query: 255 FFINNDKQKMNATQFSIWFKAKATKAGVNK-----SAHGVRKFSATISADAGATAHELMA 309 +N + K+ + + K +A + H +R + + +A Sbjct: 234 NLMNRNSDKICGNTTAKTLRGKFIEALPEYLENKPTFHEIR-SLSARLYEEEKSAEFAKK 292 Query: 310 TYGWKTVDQAETY 322 G K++ + Y Sbjct: 293 ILGHKSMRMTDKY 305 >gi|307307477|ref|ZP_07587211.1| integrase family protein [Shewanella baltica BA175] gi|306910152|gb|EFN40586.1| integrase family protein [Shewanella baltica BA175] Length = 376 Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 60/321 (18%), Positives = 108/321 (33%), Gaps = 21/321 (6%) Query: 23 YYFR---KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYR 79 YY R +G + + ++ T A + A R + TL E+ Sbjct: 43 YYVRFQYQGLRQLHVIGNANDITLDDARLEARKQIDALRYGVVREPAPSLTLCAFAEEFF 102 Query: 80 KSAHWGS-LAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFL 137 + ++ ++ + F I GD +T +HI + + A + L Sbjct: 103 --PRYARHWKPSTLLNSQRGFTRHIAPVLGDVPLAALTRQHIEQWFDGMHASKGMANRLL 160 Query: 138 TSMRVLFKWAVRQEY--VAINPCLSVERPKRKTEGIRPWTKEDMQ----QFKSFWSEGSQ 191 + V+ + A EY NPC +R K T R ++E+++ S Sbjct: 161 PLLSVMMQQAEVYEYRPAQSNPCKGFKRYK-STHSERYLSEEELKRLWLALDSHEKASPV 219 Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIG 251 + L+ +G RC++ C + + + KTG TV L +LL+ P Sbjct: 220 AVMVLRLLILTGCRCNEVCSVKWADYRQGHWYLPDSKTGAK-TVFLSSFARELLSDWPQV 278 Query: 252 KETFF----INNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHEL 307 E F + + +F F+ + H +R A+I+ + Sbjct: 279 SEHLFWHQSPSQPFTPVCLDRFWRPFRQTIHLN--DVRIHDLRHTYASIAVKHNINILTI 336 Query: 308 MATYGWKTVDQAETYTKGADR 328 G + YT A R Sbjct: 337 GRLLGHALPETTLKYTHLAKR 357 >gi|84496359|ref|ZP_00995213.1| tyrosine recombinase [Janibacter sp. HTCC2649] gi|84383127|gb|EAP99008.1| tyrosine recombinase [Janibacter sp. HTCC2649] Length = 299 Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 46/269 (17%), Positives = 95/269 (35%), Gaps = 30/269 (11%) Query: 85 GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKHT--------PSSA 133 L+ N+ ++ + G D K+T +H+ + + +SA Sbjct: 12 RGLSANTLKAYRRDLGRWTAYLSVVGIDDPAKVTERHVSEFLARLREGDEDHPALAANSA 71 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS--- 190 + L S+R L K+ + V +P +V P + + + ++++ + + G Sbjct: 72 ARTLVSVRGLHKFLALEGEVDADPAAAVSPPPPPSRLPKAISVSEVERLLNAAAVGDTPA 131 Query: 191 --QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLAM 247 + + E L +G R S++ + + + ++ K G V L L Sbjct: 132 SLRDKALLELLYGTGARISEAVGLDIDDVDMDAGIVRLEGKGGKQRLVPLGSYARTALTA 191 Query: 248 -----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294 G F+N +++ +A A +A + + S H +R A Sbjct: 192 YLVRGRGTFSTKGKGTPAIFLNQRGSRLSRQSAWSILRAAAARADLSGHLSPHTLRHSFA 251 Query: 295 TISADAGATAHELMATYGWKTVDQAETYT 323 T + GA + G +V + YT Sbjct: 252 THLLEGGADVRVVQELLGHASVTTTQVYT 280 >gi|302670606|ref|YP_003830566.1| tyrosine recombinase XerD [Butyrivibrio proteoclasticus B316] gi|302395079|gb|ADL33984.1| tyrosine recombinase XerD [Butyrivibrio proteoclasticus B316] Length = 292 Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 43/278 (15%), Positives = 99/278 (35%), Gaps = 26/278 (9%) Query: 72 KWLISE---YRKSAHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVES 125 LI Y ++ + N+ S+ +++ G IT + + S Sbjct: 2 DQLIDAFCLYLETV--KKASANTISSYRRDLNRMASHMSNRGITSIADITDDRLHGYISS 59 Query: 126 RKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 + SS I+ ++S+R F++ + + NP ++ PK R T +++ Sbjct: 60 MQEEHCAGSSIIRSVSSIRAFFRYLLENGNIQDNPAENIRTPKAARSAPRIMTSYEIEAL 119 Query: 183 KSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ---------KT 229 S + G + + E + +GLR ++ ++++ ++ I+ K Sbjct: 120 LSQTFPNDALGKRDKAILELMYATGLRTTELVELELENIDMSLNCIRLGENRVIPYGKKA 179 Query: 230 GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAH 287 + L ++L+ + F+N M+ K +AG++ + + Sbjct: 180 KEALNEYLLFARDEILSDNSASLQKVFVNYMGNPMSRQGLWKLIKTYVKRAGIDADITPY 239 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 +R ++GA + + G + Y K Sbjct: 240 SLRHSFTMHLIESGADINAVQDMMGLSGLSALSQYRKA 277 >gi|329925024|ref|ZP_08279968.1| phage integrase, N-terminal SAM domain protein [Paenibacillus sp. HGF5] gi|328940143|gb|EGG36475.1| phage integrase, N-terminal SAM domain protein [Paenibacillus sp. HGF5] Length = 346 Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 48/309 (15%), Positives = 106/309 (34%), Gaps = 42/309 (13%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISF----ESYFDQIIRKSGDFDYRKITTKHIRSGV-- 123 TL+ + K +L + + + + + + G+ R++T +R V Sbjct: 25 TLQEAVDFVVKIKRANNLKERTISGYIQNMNYFIEWVTERYGEITIREVTADLLREYVLW 84 Query: 124 -------------------ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP 164 +P+S + ++ F +E + NP +V Sbjct: 85 CATDKEYYAGHPFKAEYEKGKLGLSPASVNVRIRVLKTFFAVLFEEEVIDRNPAANVSLM 144 Query: 165 KRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-- 218 ++ + + P + E++++F + + + +L +GLR + C + Sbjct: 145 RQDVDTVMPLSDEELRRFMKAPDQRQWAQWRDYVIMTLILDTGLRLGEICALEKPEIDFV 204 Query: 219 NNIFSIKTQKTGTIITVELP------DGFMKLLAMTPIGKET--FFINNDKQKMNATQFS 270 ++ K + LP +L+A T +T F N ++++ Sbjct: 205 KKSITLPASKNKNRKSRTLPLSTETARLLKQLIAETERNFDTTYVFTTNYGEQLSEKTIQ 264 Query: 271 IWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 F A +A + + S H +R AT++A+ G + L G + Y Sbjct: 265 KSFDNYAERAKLGRTVSPHVLRHNFATMAAENGMSIFHLQKLMGHADIATTRKYV-QISE 323 Query: 329 IRLGIKNSR 337 L ++ R Sbjct: 324 GSLAEEHKR 332 >gi|328955478|ref|YP_004372811.1| integrase family protein [Coriobacterium glomerans PW2] gi|328455802|gb|AEB06996.1| integrase family protein [Coriobacterium glomerans PW2] Length = 304 Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 42/265 (15%), Positives = 88/265 (33%), Gaps = 28/265 (10%) Query: 88 AVNSRISFESYFDQI-----IRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRV 142 + + ++E + + + + + +P + L+++R Sbjct: 21 SPETARAYEGHLRAYLSWQRRAHLDGLVLEVPVVRSYLADLYDARRSPRTIAAHLSAIRS 80 Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRLAFEF 198 L +W + + + +++ P+ T R T++ M+Q + GS+ E Sbjct: 81 LSRWLLLEGITKTDAVATMQTPRIPTGLPRTLTQQQMEQLLALPDTASPTGSRDAAILEL 140 Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVEL----------------PDGF 241 L SG R S+ + L ++ K V L P Sbjct: 141 LYASGARISEIAALDIASLDAEQRCVRLLGKGSKERIVPLYRRALRRLVSYLDEGRPLLI 200 Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299 + + F++ ++M+A F+A A AG+ + H +R AT Sbjct: 201 RSRTLASDSDRTALFLSRRGRRMSADSLRCRFRAYARIAGLPADITPHAMRHTFATDLLA 260 Query: 300 AGATAHELMATYGWKTVDQAETYTK 324 GA + G ++ + YT Sbjct: 261 GGADMRSVQELLGHASLATTQLYTH 285 >gi|124265741|ref|YP_001019745.1| hypothetical protein Mpe_A0548 [Methylibium petroleiphilum PM1] gi|124258516|gb|ABM93510.1| conserved hypothetical protein [Methylibium petroleiphilum PM1] Length = 334 Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 52/313 (16%), Positives = 96/313 (30%), Gaps = 44/313 (14%) Query: 52 TGSTPKREYINSPRKKPT------TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK 105 + + P P L+ LI Y + + ++ D + K Sbjct: 12 ATTPASVPHTGVPPPAPGVRDGSIALRHLIDAYMAAYAGRDTS-RTQR-----LDWWVAK 65 Query: 106 SGDFDYRKITTKHIRSGVE------------------------SRKHTPSSAIQFLTSMR 141 G +T H+ + +E R P++ ++ ++ Sbjct: 66 LGGVSLADLTDDHVFTALEQLATQRGRYFAGKDADGKPVMKAKRRPLAPATLNRYQAALS 125 Query: 142 VLFKWAVRQEYVAIN---PCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEF 198 + WA R+ N PC VE K E +R + + + + S PRL Sbjct: 126 AVLTWAQRRRIAPKNWQNPCRHVELKAEKNEIVRFLSDAERTALLAACRKSSWPRLYLLV 185 Query: 199 LLY--SGLRCSDSCRAGVQHLQNNIFS--IKTQKTGTIITVELPDGFMKLLAMTPIGKET 254 ++ +G R + + + K G + L + LA Sbjct: 186 MMGLTTGARRGELEALRWADVDLERAEAAVHRSKNGDKKVLPLVPAVVDELAKHAGAANA 245 Query: 255 FFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGW 313 + ++ A F + AGV H +R A+ A GAT E+ G Sbjct: 246 LVFPSTRRPDIAYNFDPAWDRALKAAGVKSFRFHDLRHSCASALAQNGATLLEIAEVLGH 305 Query: 314 KTVDQAETYTKGA 326 + + + Y+ A Sbjct: 306 RQLSVTKRYSHLA 318 >gi|153933244|ref|YP_001385294.1| phage integrase family site specific recombinase [Clostridium botulinum A str. ATCC 19397] gi|152929288|gb|ABS34788.1| site-specific recombinase, phage integrase family [Clostridium botulinum A str. ATCC 19397] Length = 387 Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 64/392 (16%), Positives = 127/392 (32%), Gaps = 75/392 (19%) Query: 16 TRHGKIIYYF-----RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK---- 66 T++GK Y R +G+ IR F Y ++ + KR+ + K Sbjct: 8 TKNGKQYYRVTASIGRDANGKLIR------KEF---YGASKKEAENKRDEYLNGIKNGLN 58 Query: 67 ---KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF-----DYRKITTKH 118 K L L+ + + +S +E + I+ S F D + I + Sbjct: 59 IDYKNIILGELMHTWLFEIMRVKVKPSSFERYEGIYRNYIKNSQLFGLKLADLKTIQVQR 118 Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE-----GIRP 173 + + + T + +R F +AV + Y+ NPC + + I Sbjct: 119 YYNELYNNGKTSNVIKNLNKLLRTFFNYAVNEGYILKNPCSGSKIIIPGGKDMEVKEIEI 178 Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII 233 +T ++++ K EG++ + L SGLR + + IK K+ + Sbjct: 179 FTDKEIKALKKQL-EGNRLKCLILLALGSGLRQGELLALRWDDIDFKTNEIKVTKSIKRV 237 Query: 234 -------------------------TVELPDGFMKLLA--------------MTPIGKET 254 V +P + L + + K Sbjct: 238 KIIENDGTGKRKTIEQSPKSIKSNRVVPIPSKLINALEEHKALQEKEIKEAGCSYVDKNL 297 Query: 255 FFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGW 313 F + + ++ +A + +K H +R AT + + G Sbjct: 298 VFATKLGKPIVVKNLFESYRRILIRAKIPHKKFHALRHTYATKLFEKDVQLKTVQKLLGH 357 Query: 314 KTVD-QAETYTKGADRIRLGIKNSRRISSVVD 344 K + A+TYT + + I + +++ + D Sbjct: 358 KNISITADTYTHVMPKEK--ISAADKLNDLFD 387 >gi|328907661|gb|EGG27425.1| site-specific tyrosine recombinase XerC [Propionibacterium sp. P08] Length = 310 Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 41/284 (14%), Positives = 91/284 (32%), Gaps = 27/284 (9%) Query: 68 PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSGVE 124 P +L + ++ + N+ + + GD KI T +R+ + Sbjct: 10 PASLTVPVEDFCDHLSALRRSPNTIRGYRADLIDFMGHAHSHGDDALGKIGTSQVRAWLA 69 Query: 125 SRK---HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 + +P++ + ++ RV F+WA + + +P ++ + + Sbjct: 70 DTRLAGASPATMQRRWSAARVFFRWAANEGLIDCDPTAALTSANVPKRLPATLGVDQARH 129 Query: 182 FKSFW---------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGT 231 +G++ E L GLR + C + + + + I T K Sbjct: 130 ILDGAVAQARSDETPQGARDAAILEVLYGGGLRVGELCGLDLGDVDRSRQTVIVTGKGDK 189 Query: 232 IITVELPDGFMKLLA---------MTPIGKETFFINNDKQKMNATQFSIWFKAKATK--A 280 TV + + + P + F+ +++ A Sbjct: 190 ERTVPMGTPALHAIDTWLPRRAEWAGPDSGQALFLGARGGRIDQRVVRRVVHAHMRSEPD 249 Query: 281 GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 + HG+R AT + GA + G +++ + YT Sbjct: 250 SPDLGPHGLRHAMATHLLEGGADLRTVQDILGHESLATTQIYTH 293 >gi|167627355|ref|YP_001677855.1| phage integrase family protein [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|167597356|gb|ABZ87354.1| phage integrase family protein [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 293 Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 39/264 (14%), Positives = 90/264 (34%), Gaps = 18/264 (6%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI---RSGVESRKHTPSSAIQFLTSMR 141 + + + ++ Q+ D D K+ I + ++ ++ + + L+S+R Sbjct: 18 KNYSQETINNYRRDLLQLNSSIVDKDITKLENNDILMWVKKLHAQGNSSKTLQRKLSSLR 77 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG---SQPRLAFEF 198 F + + E + NP ++ PK + + +++ ++ F+ Sbjct: 78 SFFNFLINSELIKNNPTTGIKAPKSSKKLPKAVNTDELAYLLDIKPSNNIETRDIACFDL 137 Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT---------GTIITVELPDGFMKLLAMTP 249 L G+R S+ ++ + N SI+ G+ + L +P Sbjct: 138 LYSCGIRLSELSSIELKDININQKSIRVIGKGNKERVVYFGSKTLINLNRWLNTRDTYSP 197 Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATK-AGVNKSAHGVRKFSATISADAGATAHELM 308 FI+ + + + + A K A + H +R AT D+ + Sbjct: 198 -KCNFLFISQNGEHLTNRSIQKRIEIFAQKYATKHIHPHMLRHSFATHVLDSSKDLLAVK 256 Query: 309 ATYGWKTVDQAETYTKGADRIRLG 332 G + + YT + +L Sbjct: 257 DLLGHADISSTQIYTH-LNFQQLA 279 >gi|212715594|ref|ZP_03323722.1| hypothetical protein BIFCAT_00493 [Bifidobacterium catenulatum DSM 16992] gi|212660961|gb|EEB21536.1| hypothetical protein BIFCAT_00493 [Bifidobacterium catenulatum DSM 16992] Length = 308 Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 47/274 (17%), Positives = 91/274 (33%), Gaps = 34/274 (12%) Query: 85 GSLAVNSRISFESYFDQ---IIRKSGDFDYRKITTKHIRSGVE--SRKHTPSSAIQFLTS 139 L+ N+R ++ ++ + + G + ++T + +R + S+KH SS + + Sbjct: 18 RGLSENTRKAYRGDVEECLLALERLGCRNLNEVTIEDLRMWMAESSKKHAKSSMARKTVA 77 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS--------- 190 +R F W +P + PK ++ +Q E S Sbjct: 78 VRGFFAWTHEHGVTTTDPACVLMTPKIPDTLPDVLSESQAEQLMERVDEDSETSQPKERT 137 Query: 191 --------QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGF 241 + E L +G+R ++ V + +N T K + Sbjct: 138 MKQQAIELRDAAMLELLYATGMRVAELVGLDVPDVVFSNRTVKVTGKGNKQRVMPFGAPA 197 Query: 242 MKLLAMTPIGKE----------TFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVR 290 K + F+ ++++ A A AGV + S H +R Sbjct: 198 QKAIRRWLDDGRPLLVGEQSAAALFLGRQGKRIDQRMVRRVVHACARDAGVPDISPHALR 257 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK 324 +AT D GA E+ G ++ + YT Sbjct: 258 HSAATHMLDGGADLREVQELLGHSSLKTTQRYTH 291 >gi|261406744|ref|YP_003242985.1| integrase family protein [Paenibacillus sp. Y412MC10] gi|261283207|gb|ACX65178.1| integrase family protein [Paenibacillus sp. Y412MC10] Length = 311 Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 46/296 (15%), Positives = 104/296 (35%), Gaps = 32/296 (10%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133 L Y K + A +++ ++ + ++T + + + + + A Sbjct: 16 LFLSYMKDREY---AKDTQQAYLHDIKHFLNSLEGKPITEVTDIDVMYYLTQVRESGAGA 72 Query: 134 ---IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE-----GIRPWTKEDMQQFKSF 185 + +++R+ +K +R + + NP + +E+ K + +P + + Sbjct: 73 RYRNRCQSAIRLFYKVMIRFKLASTNPAMDIEKAKVEKNRQPTYLQKPILDACLNGIEGR 132 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDGFMKL 244 + + + Y+GLR S+ + V + SI K + LP KL Sbjct: 133 YRI--RDVTIIALMAYAGLRVSEIVKLNVTDVDMENSSIGVLGKGSKWRYIPLPAELNKL 190 Query: 245 L--------AMTPIGKETFFINNDKQKMNA--------TQFSIWFKAKATKAGVNKSAHG 288 L A FF++ +++++ F+ + +G + SAH Sbjct: 191 LQMYLEERMAPRSSKDNAFFVSQFRRRISKRMVQTIAEKTFAAMTEQFPQLSGQSLSAHK 250 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344 +R AT GA + G + + + YT D + + +I + Sbjct: 251 LRHSFATELLRNGADLRAVQELLGHEDISTTQIYTHVLDETK--ERAMNKIRPAIP 304 >gi|217975611|ref|YP_002360281.1| integrase family protein [Shewanella baltica OS223] gi|217500806|gb|ACK48858.1| integrase family protein [Shewanella baltica OS223] Length = 376 Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 60/321 (18%), Positives = 108/321 (33%), Gaps = 21/321 (6%) Query: 23 YYFR---KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYR 79 YY R +G + + ++ T A + A R + TL E+ Sbjct: 43 YYVRFQYQGLRQLHVIGNANDITLDDARLEARKHIDALRYGVVREPAPSLTLCAFAEEFF 102 Query: 80 KSAHWGS-LAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFL 137 + ++ ++ + F I GD +T +HI + + A + L Sbjct: 103 --PRYARHWKPSTLLNSQRGFTRHIAPVLGDVPLAALTRQHIEQWFDGMHASKGMANRLL 160 Query: 138 TSMRVLFKWAVRQEY--VAINPCLSVERPKRKTEGIRPWTKEDMQ----QFKSFWSEGSQ 191 + V+ + A EY NPC +R K T R ++E+++ S Sbjct: 161 PLLSVMMQQAEVYEYRPAQSNPCKGFKRYK-STHSERYLSEEELKRLWLALDSHEKASPV 219 Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIG 251 + L+ +G RC++ C + + + KTG TV L +LL+ P Sbjct: 220 AVMVLRLLILTGCRCNEVCSVKWADYRQGHWYLPDSKTGAK-TVFLSSFARELLSDWPQV 278 Query: 252 KETFF----INNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHEL 307 E F + + +F F+ + H +R A+I+ + Sbjct: 279 SEHLFWHQSPSQPFTPVCLDRFWRPFRETIHLN--DVRIHDLRHTYASIAVKHNINILTI 336 Query: 308 MATYGWKTVDQAETYTKGADR 328 G + YT A R Sbjct: 337 GRLLGHALPETTLKYTHLAKR 357 >gi|85372970|ref|YP_457032.1| site-specific recombinase, phage integrase family protein [Erythrobacter litoralis HTCC2594] gi|84786053|gb|ABC62235.1| site-specific recombinase, phage integrase family protein [Erythrobacter litoralis HTCC2594] Length = 330 Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 51/273 (18%), Positives = 103/273 (37%), Gaps = 15/273 (5%) Query: 81 SAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139 S HW ++R + +Y D ++I + G I I +S + + + Sbjct: 59 SPHWK---PSTRDASRAYIDKRLIPRFGALSVDAIERADINRWRDSMADVGGAFNRSIPV 115 Query: 140 MRVLFKWAVRQEYVA--INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL--- 194 + V+ ++A + Y NPC V R KR R + ++ ++ +E + Sbjct: 116 LSVMMQYAEKLGYREKNTNPCRGVSRFKRDLPE-RYLSADEYRRLGKVLAEHNGANAFVV 174 Query: 195 -AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPI-GK 252 A L+Y+G R S+ ++++ ++ KTG T+ L + +L G Sbjct: 175 PALLLLIYTGARVSEIATLRWRYVELPRLALPDSKTG-PKTIYLNPQAIAVLDGLQRRGD 233 Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYG 312 + +++ W K + A + H +R A+++ G + G Sbjct: 234 DQLVFPAMYREVPINLGQHWEKIRRKAALPDVRLHDLRHSFASVAIAKGIPLATIGKLLG 293 Query: 313 WKTVDQAETYTKGADRIRLGIKNSRRISSVVDS 345 + Y AD + +++ RI S + S Sbjct: 294 HALPETTARYAHLAD--EVISESADRICSSLAS 324 >gi|315282101|ref|ZP_07870587.1| tyrosine recombinase XerC [Listeria marthii FSL S4-120] gi|313614253|gb|EFR87911.1| tyrosine recombinase XerC [Listeria marthii FSL S4-120] Length = 300 Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 43/283 (15%), Positives = 100/283 (35%), Gaps = 27/283 (9%) Query: 67 KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD---FDYRKITTKHIRSGV 123 + L+ +Y S + +VN+ ++E+ R + Y+++T +R + Sbjct: 3 QEGKLEQQFLDYLHSER--NYSVNTSTAYENDLLDFRRFLNEQAIMAYQQVTFLDVRIYL 60 Query: 124 ESRKHT---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 K ++ + ++S+R + + +R+ + NP V K + + + E+M+ Sbjct: 61 TELKQKSFSRTTVARKISSLRSFYTFLLRENVITENPFTYVSHAKNQLRLPKFFYSEEME 120 Query: 181 Q-----FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIIT 234 ++ + + R+ E L +G+R S+ + L + +I K Sbjct: 121 ALFQVVYEDNETLTLRDRVLLEVLYGTGIRVSECAGILMPDLDTSYQAILIRGKGNKERY 180 Query: 235 VEL-----------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283 V +L+ + +N+ + +KA + Sbjct: 181 VPFGVYAEDAITDYLPSRTELMTRYKKSHDALLVNHYGDPLTTRGIRYCLTKIISKASLT 240 Query: 284 KS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 + H +R AT + GA + G ++ + YT Sbjct: 241 RKIHPHMLRHTFATDLLNNGADMRTVQELLGHASLSSTQIYTH 283 >gi|198275042|ref|ZP_03207574.1| hypothetical protein BACPLE_01201 [Bacteroides plebeius DSM 17135] gi|198272489|gb|EDY96758.1| hypothetical protein BACPLE_01201 [Bacteroides plebeius DSM 17135] Length = 372 Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 53/318 (16%), Positives = 98/318 (30%), Gaps = 30/318 (9%) Query: 28 GHGRRIRLPYPHESTFIPAY-------MSALTGSTPKREYINSPRKKPTTLKWLISEYRK 80 G + + F Y SA+ + P++E P Y + Sbjct: 47 GGRAYLPAEDFVLAEFFDRYVKMAFIDYSAIKETAPRKEEDKRPPLPEG--------YLE 98 Query: 81 SAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG----VESRKHTPSSAIQF 136 + ++ + SYF + +T I + + + Q Sbjct: 99 KLQQVRYSDHTVRVYTSYFRDFQQHFEGRKIETVTPGEINDYLLYLIHEKNISSCQQNQR 158 Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF 196 + +++ ++ + QE C V R KR+ +KE++++ + F Sbjct: 159 INAIKFYYEKVLGQERR----CYKVNRAKREKTLPDVLSKEEIKKILDATVTDLRFFCMF 214 Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTIITVELPDGFMKLL---AMTPIG 251 L +GLR S+ + + ++ K L MK L Sbjct: 215 SILYSAGLRISELLELKPGDINESRSLIRVRQGKGKKDRYTLLSKPLMKKLTEYNRLYKP 274 Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMA 309 K F + + + S KA A +AG+ K H +R A + G + Sbjct: 275 KVWLFEHRPGEPFTESIVSKRLKAAAREAGITKRIYPHLLRHSFAPHLLEQGTDIKIVKE 334 Query: 310 TYGWKTVDQAETYTKGAD 327 G + E Y AD Sbjct: 335 LMGHNNIKTTERYVHIAD 352 >gi|313623983|gb|EFR94082.1| tyrosine recombinase XerC [Listeria innocua FSL J1-023] Length = 300 Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 38/273 (13%), Positives = 97/273 (35%), Gaps = 27/273 (9%) Query: 77 EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK------ITTKHIRSGVESRKHTP 130 +Y S + + ++ ++E+ R + + + + + ++ + + Sbjct: 13 DYLHSER--NYSEHTSTAYENDLSDFRRFLNEQAITEYQQVTFLDVRIYLTELKQKSFSR 70 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ-----FKSF 185 ++ + ++S+R + + +R+ + NP V K + + + E+M+ ++ Sbjct: 71 TTVARKISSLRSFYTFLLRENVITENPFTYVSHAKNQLRLPKFFYSEEMEALFQVVYEDN 130 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVEL------- 237 + + R+ E L +G+R S+ + L + +I K V Sbjct: 131 ETLTLRDRVILEVLYGTGIRVSECAGIMLSDLDTSYQAILIRGKGNKERYVPFGAYAEDA 190 Query: 238 ----PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRK 291 G +L+ ++ IN+ + +KA + + H +R Sbjct: 191 ITDYLSGRTELMTRFKKTHDSLLINHYGDPLTTRGIRYCLTKIISKASLTRKIHPHMLRH 250 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTK 324 AT + GA + G ++ + YT Sbjct: 251 TFATDLLNNGADMRTVQELLGHASLSSTQIYTH 283 >gi|107024018|ref|YP_622345.1| site-specific tyrosine recombinase XerC [Burkholderia cenocepacia AU 1054] gi|116691105|ref|YP_836728.1| site-specific tyrosine recombinase XerC [Burkholderia cenocepacia HI2424] gi|105894207|gb|ABF77372.1| Tyrosine recombinase XerC [Burkholderia cenocepacia AU 1054] gi|116649194|gb|ABK09835.1| tyrosine recombinase XerC [Burkholderia cenocepacia HI2424] Length = 306 Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 43/279 (15%), Positives = 88/279 (31%), Gaps = 30/279 (10%) Query: 75 ISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV---ESRKHTP 130 I+ Y + H L+ ++ ++ D++ + + +T +R V + + Sbjct: 6 IAAYLSNLKHVRQLSEHTLRAYTHELDELKKLAAGRPLEALTAADMRGAVVRGHAAGLSA 65 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 S L++ R ++W ++ + NP V PKR+ + + +D G+ Sbjct: 66 RSISHRLSAWRAFYRWFAQRVEMPANPVAGVRAPKREKSLPKALSVDDAVALMDAPLAGT 125 Query: 191 ----QPRLAFEFLLYSGLRCSDSCRA-------------GVQHLQNNIFSIKTQKT---- 229 + E SGLR ++ G L +++ + Sbjct: 126 TESIRDHAILELFYSSGLRLAELVGLDVRYTQADGYRSAGWLDLAEAEVTVRGKGNKERK 185 Query: 230 ---GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-- 284 G+ L F++ +M+ K A AG+ Sbjct: 186 VPVGSKAIDALNAWLAVRDEFVKHDPHPLFVSVRGNRMSPGVVRERVKRAALAAGIPANV 245 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 H +R AT + + G +V + YT Sbjct: 246 HPHVLRHSFATHVLQSSGDLRAVQELLGHASVAATQIYT 284 >gi|282878705|ref|ZP_06287473.1| phage integrase domain protein [Prevotella buccalis ATCC 35310] gi|281299096|gb|EFA91497.1| phage integrase domain protein [Prevotella buccalis ATCC 35310] Length = 292 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 48/277 (17%), Positives = 106/277 (38%), Gaps = 28/277 (10%) Query: 74 LISEYRKSAHW-GSLAVNSRISFE---SYFDQIIRKSGD-FDYRKITTKHIRSGVESRKH 128 +I E+ + + + + S+ F++ + GD + + + IR +E Sbjct: 1 MIEEFLNYLRFEKNRSTLTAKSYGDDLRAFERYFQGLGDQITWESVDSDIIRGWMEDMMD 60 Query: 129 TPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 +SA + L+++R L+++++ + V +NP L +ERPK + + +M + Sbjct: 61 RGNSATSICRRLSALRSLYRYSLSRGLVQVNPTLRIERPKMGKPLPQFLKESEMDELLDA 120 Query: 186 --WS---EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK---TQKTGTIITVEL 237 W + + R +G+R ++ G+ + + + + K V Sbjct: 121 STWDTSYQDALARTIIITFYETGMRLAELI--GLDDVSVDFVNRQFKVLGKRNKQRLVPF 178 Query: 238 PDGFMKLLA--------MTPIGKETFFINNDKQKMNATQFSIWFKA--KATKAGVNKSAH 287 D ++L + FF++ + +MN Q K ++ H Sbjct: 179 GDELYQVLQEYLNQRNEQIVRKSKAFFLSRNGVRMNHNQVRYLVKKNLSLVSTLKKRTPH 238 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 +R AT + GA + G ++++ E YT Sbjct: 239 VLRHTFATTMLNNGAGLENVQKLLGHESLETTEIYTH 275 >gi|225076001|ref|ZP_03719200.1| hypothetical protein NEIFLAOT_01028 [Neisseria flavescens NRL30031/H210] gi|224952716|gb|EEG33925.1| hypothetical protein NEIFLAOT_01028 [Neisseria flavescens NRL30031/H210] Length = 316 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 46/268 (17%), Positives = 94/268 (35%), Gaps = 19/268 (7%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH----IRSGVESRKHTP 130 + Y K+ + ++ ++ +++R D + T+ + + + + Sbjct: 29 LERYLKTLLQQGKSEHTVSAYWRDLSELMRLLPDNLENGLPTRRDFVAVLKKLSQKGLSE 88 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 SS + L+ R W V+ E + +P +++ P+ + +E + Sbjct: 89 SSLARKLSVWRQYCSWLVQIEVMESDPTFNMKAPRLPERLPKALPQEPLNHILDHAPVDD 148 Query: 191 ----QPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVEL----PDG 240 + + FE + SGLR S+ + + S+K K G V L Sbjct: 149 ELDVRDKAMFELMYGSGLRLSEIQGLNLDGIVLDEGWVSVK-GKGGKQRQVPLVAKSIAA 207 Query: 241 FMKLL--AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATI 296 L + G++ F N + ++ Q +A A + G + S H +R AT Sbjct: 208 LRDYLAVRIAKEGEQALFTNKNGGRLGQRQIQKRLQAWAVRVGSASHISPHMMRHSYATH 267 Query: 297 SADAGATAHELMATYGWKTVDQAETYTK 324 A + G + + YTK Sbjct: 268 LLQASGDIRAVQELLGHSNLSATQVYTK 295 >gi|317121982|ref|YP_004101985.1| tyrosine recombinase XerD [Thermaerobacter marianensis DSM 12885] gi|315591962|gb|ADU51258.1| tyrosine recombinase XerD subunit [Thermaerobacter marianensis DSM 12885] Length = 401 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 43/282 (15%), Positives = 94/282 (33%), Gaps = 25/282 (8%) Query: 68 PTT--LKWLISEYRKSAH-WGSLAVNSRISFESYFDQII-----RKSGDFDYRKITTKHI 119 P T ++EY + LA + ++ R+ G + Sbjct: 12 PGTGPWAAALAEYLEILRVERGLAARTLEAYRRDLADFAAFAAGRERGPEAVTRSLVMAY 71 Query: 120 RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179 + ++ + L ++R F++ V + ++ +P + P+ R + ++ Sbjct: 72 LHHLRQAGRAHTTVARRLAALRGFFRYLVEEGRLSQDPVEGMTAPRAGRPLPRVMSVAEV 131 Query: 180 QQFKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIIT 234 ++ G + R E L +GLR S+ + L + ++ K G Sbjct: 132 ERMLEVPQPPSPAGLRDRAVLELLYATGLRVSELVGLDLDDLLLDHGLLRCRGKGGKERV 191 Query: 235 VELPDGFMKLLA----------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284 V + ++ + F+N+ +++ + A +AGV++ Sbjct: 192 VPVAPPAVEATRIYLERGRPHLCRRPSQRALFLNHRGGRLSRQWVWHLLRRAARRAGVSR 251 Query: 285 --SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 S H +R AT GA + G + + YT Sbjct: 252 AVSPHTIRHSFATHLLAGGADLRAVQELLGHADISTTQIYTH 293 >gi|314938036|ref|ZP_07845346.1| tyrosine recombinase XerC [Enterococcus faecium TX0133a04] gi|314941978|ref|ZP_07848839.1| tyrosine recombinase XerC [Enterococcus faecium TX0133C] gi|314948769|ref|ZP_07852141.1| tyrosine recombinase XerC [Enterococcus faecium TX0082] gi|314951787|ref|ZP_07854826.1| tyrosine recombinase XerC [Enterococcus faecium TX0133A] gi|314991806|ref|ZP_07857264.1| tyrosine recombinase XerC [Enterococcus faecium TX0133B] gi|314995847|ref|ZP_07860934.1| tyrosine recombinase XerC [Enterococcus faecium TX0133a01] gi|313589951|gb|EFR68796.1| tyrosine recombinase XerC [Enterococcus faecium TX0133a01] gi|313593617|gb|EFR72462.1| tyrosine recombinase XerC [Enterococcus faecium TX0133B] gi|313596066|gb|EFR74911.1| tyrosine recombinase XerC [Enterococcus faecium TX0133A] gi|313599230|gb|EFR78075.1| tyrosine recombinase XerC [Enterococcus faecium TX0133C] gi|313642611|gb|EFS07191.1| tyrosine recombinase XerC [Enterococcus faecium TX0133a04] gi|313644835|gb|EFS09415.1| tyrosine recombinase XerC [Enterococcus faecium TX0082] Length = 314 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 47/281 (16%), Positives = 98/281 (34%), Gaps = 34/281 (12%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFE---SYFDQIIRKSGDFDYRKITTKHIRSGVESRK 127 L++LI E + ++ ++E +F + +SGD D K +R + + Sbjct: 24 LRYLIVE-------RGYSEKTKEAYEEDILHFKHFLEESGDADLLKAEYFTVRVYLSALA 76 Query: 128 H-----TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 + +S + + S+R +++ +++E + NP V K+ R + + +MQ Sbjct: 77 DHRPSYSRNSISRKIASLRSFYQYLLKEEVIKENPFSYVHLKKKNLRLPRFFYENEMQAL 136 Query: 183 KSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVEL 237 + R E L SG+R S+ V + ++ + K L Sbjct: 137 FDSVAGDSPLDLRNRALLEVLYGSGIRLSECSSLSVSDIDFDSEVMLIHGKGNKERYAPL 196 Query: 238 ------------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS 285 +G L+ + F+N+ + + T K+ ++ Sbjct: 197 GSFAQDALQEYFREGRQVLMTKYHEEHDIVFVNHHGKPITPTGIEYVLNQMIKKSSLDSD 256 Query: 286 --AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R AT + GA + G + + Y Sbjct: 257 IHPHMLRHTFATHLLNNGADLRTVQELLGHANLSTTQIYAH 297 >gi|313206990|ref|YP_004046167.1| integrase family protein [Riemerella anatipestifer DSM 15868] gi|312446306|gb|ADQ82661.1| integrase family protein [Riemerella anatipestifer DSM 15868] Length = 291 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 45/260 (17%), Positives = 96/260 (36%), Gaps = 22/260 (8%) Query: 85 GSLAVNSRISFESYF----DQIIRKSGDFDYRKITTKHIRS---GVESRKHTPSSAIQFL 137 ++N+ S+ D + G + K IR+ + + + + L Sbjct: 13 KRYSLNTLASYSRDLQDFSDFVKETEGVDTLISVDKKVIRNFVVYLSENNLSKRTINRKL 72 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ--QFKSFWSEGSQPRLA 195 +++R + + V+ ++ +P +V K E P+++++M+ Q + +L Sbjct: 73 SALRSFYIYLVKLGIISASPMETVSSLKFYGEKQIPFSQKEMENLQNLLNEEKLLLNKLI 132 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDG--------FMKLL 245 E L +G+R S+ CR ++ + N + K + + + + K Sbjct: 133 IELLYQTGMRKSELCRLALKDVDFIQNRIRV-VGKGNKMREIPISENIKRELKLYLEKER 191 Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAK--ATKAGVNKSAHGVRKFSATISADAGAT 303 T + FF+ QK+ A + KS H +R AT + GA Sbjct: 192 KPTKENLDYFFVRESGQKLTGKFVYSVVNDYLSAVTSKKKKSPHVLRHSFATHVLENGAE 251 Query: 304 AHELMATYGWKTVDQAETYT 323 ++ G ++ + YT Sbjct: 252 IAQVKEILGHASLASTQVYT 271 >gi|293192780|ref|ZP_06609675.1| tyrosine recombinase XerD [Actinomyces odontolyticus F0309] gi|292820027|gb|EFF79025.1| tyrosine recombinase XerD [Actinomyces odontolyticus F0309] Length = 315 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 43/289 (14%), Positives = 97/289 (33%), Gaps = 33/289 (11%) Query: 69 TTLKWLISEYRKSAH-WGSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIRSGVE 124 T+L+ L+ ++ + ++ ++ + + G + I+ + I Sbjct: 2 TSLEALVRDWVDYLRVEKGASAHTVSNYRRDVARYAFDMKSRGKVNVEDISPRDIEDYTM 61 Query: 125 SRKHTP--------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176 SS + ++R L K+A+ + V + + P++ + + Sbjct: 62 RLASGQVTGTPAAASSVARASAAIRGLHKYALTEGAVGTDAAAQLHAPRQGRHLPKALSV 121 Query: 177 EDMQQFKSFW-----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKT-QK 228 +++ + G + E L +G R S++ L ++ ++ K Sbjct: 122 DEVGRLLDAAHADDSPIGLRDAALLELLYATGARVSEAVSLSADDLDLDGDVPVVRLFGK 181 Query: 229 TGTIITVELPD-----------GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKA 277 V + LA G FF+N+ ++ + A Sbjct: 182 GRKERVVPVGSFAVDALYAYRVRARPALAARGRGSTAFFLNSRGGALSRQSAWTAIRRAA 241 Query: 278 TKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 A + + S H +R AT + GA+ E+ G +V + YT+ Sbjct: 242 EAAQLGERVSPHTLRHSFATHLLEGGASVREVQELLGHASVATTQIYTQ 290 >gi|293368859|ref|ZP_06615463.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] gi|292636164|gb|EFF54652.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] Length = 397 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 59/293 (20%), Positives = 105/293 (35%), Gaps = 33/293 (11%) Query: 65 RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD-FDYRKITTKHIRSGV 123 + K + +L++ +S GSL N + + ++ GD +R I + + V Sbjct: 99 KSKANVIDYLVNMRNQSKERGSL--NYEKTIGNTIRELKLFRGDYIAFRDIDKDFLSNFV 156 Query: 124 ESRKHTPSSAIQFLT----------------SMRVLFKWAVRQEYVAINPCLS---VERP 164 + K ++ L +R A ++ + INP ++ Sbjct: 157 DFLKQAKKASKYGLAKAGGVLSNNSVVAYYGVLRTALNKAFKEGIITINPTKEFNFADKV 216 Query: 165 KRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL----QNN 220 K + T E+++ + + + AF F GLR SD + L + Sbjct: 217 KAEASRREYLTIEELKLLIATECKYEIMKQAFLFSCLCGLRVSDIRKLKWSDLQKSGERI 276 Query: 221 IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ-FSIWFKAKATK 279 IK QKT + + + D +K L K+ FI + + + A Sbjct: 277 RIEIKMQKTKEPLYLPISDEALKWLPQRGEAKDDDFIF----PLTHEGTINNILQKWAKA 332 Query: 280 AGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 AGV K S H R AT+ GA + + G K + + Y K D+ + Sbjct: 333 AGVTKHISFHVARHTHATMMLTLGADLYTVSKLLGHKNIATTQIYAKIVDKKK 385 >gi|183600875|ref|ZP_02962368.1| hypothetical protein PROSTU_04475 [Providencia stuartii ATCC 25827] gi|188019658|gb|EDU57698.1| hypothetical protein PROSTU_04475 [Providencia stuartii ATCC 25827] Length = 354 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 55/340 (16%), Positives = 110/340 (32%), Gaps = 34/340 (10%) Query: 7 LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGS-----TPKREYI 61 LPP + R G Y +R + Y A A++ + + Sbjct: 12 LPPNLYC---RKG--YYSYRN---PETGIEYGIGRNKAEAVNEAISANLFIYGKKESLIN 63 Query: 62 NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121 I + + L + ++ +I + +I TK I Sbjct: 64 RMASNDAIKFHDWIDRFGEIILLRDLKKKTLDDYQGRLKRIKNSFNNVPLSEIKTKDIAD 123 Query: 122 GVES--RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179 + + ++A + ++ +F A+ V NP ++ P+ K R ++ D Sbjct: 124 YINNIVSDGNITTARLMRSILKDMFNEAMSDGVVDFNPVIATRVPRNKIARTRM-SESDY 182 Query: 180 QQFKSFWSEGSQP--RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL 237 Q + E QP ++ + + +G R D + + + I+ +KTGT I + L Sbjct: 183 IQIYNTAVEHCQPWVSMSMDLAILTGQRSGDIRKLKWDDVHDGFLWIEQEKTGTKIAIPL 242 Query: 238 P-------DGFMKLLAMTP---IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--- 284 +L GKE ++ + F +K+G++ Sbjct: 243 TISNNIANKTLQSVLDRCKHELNGKEFVLVSQKGDMLADKTIGKAFSLARSKSGLSWEGS 302 Query: 285 --SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 + H +R A+ + G K++D Y Sbjct: 303 PPTFHEIR-SLASRVYGNEKSNEFANQLLGHKSMDMTRMY 341 >gi|254510675|ref|ZP_05122742.1| putative integrase for prophage CP-933U [Rhodobacteraceae bacterium KLH11] gi|221534386|gb|EEE37374.1| putative integrase for prophage CP-933U [Rhodobacteraceae bacterium KLH11] Length = 382 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 59/343 (17%), Positives = 112/343 (32%), Gaps = 35/343 (10%) Query: 3 PSLRLPPFVTKER--TRHG-KIIYYFRKGHGRRI---RLPYPHESTFIPAYMSALTGSTP 56 P LP V + R T G K +Y +G G + + P + F+ A+ + S Sbjct: 12 PRSSLPKGVHRVRRDTVEGVKFHFYAWRGGGPKFWESSVREPRDPEFLIAF-AEKAKSRF 70 Query: 57 KREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITT 116 EY+ ++ + S ++ + + + ++ D + Sbjct: 71 GAEYMTPE---------MVDGFLDSTAMPK-GERTQADYRKWALRFAKEFADDPAKLWEN 120 Query: 117 KHIR----SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172 R K +P T + WA + +A + C + R Sbjct: 121 PKSRGELNEWRAKWKDSPKQHDYAGTVAVRILNWARDEGKIAAHFCDRLHRIYTVDRAEI 180 Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ----NNIFSIKTQK 228 WT D Q++ + R+ +GLR +D R +L+ F ++TQK Sbjct: 181 VWTDAD-QRYFKEAAPPWVQRVM-TLACETGLRPADLVRLTRGNLESFDGIERFRVRTQK 238 Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHG 288 G + + + +L+ T + +N+ + + T S + S Sbjct: 239 RGRVAHIPVTPELRQLIDETAADQLVLLVNDRNKPLKPTSASRAIARYRDRITDKLSDPT 298 Query: 289 V-----RKFSATISADAGATAHELMATYGWK---TVDQAETYT 323 + R +AT AG +++ GW E Y Sbjct: 299 LRLQDTRGTAATRLLRAGLGLNQIANHMGWSLRYAAAVIEHYA 341 >gi|116619488|ref|YP_821644.1| phage integrase family protein [Candidatus Solibacter usitatus Ellin6076] gi|116222650|gb|ABJ81359.1| phage integrase family protein [Candidatus Solibacter usitatus Ellin6076] Length = 303 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 53/287 (18%), Positives = 104/287 (36%), Gaps = 28/287 (9%) Query: 64 PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD--------YRKIT 115 P +P+ L+ I Y + + +S ++ES Q + D + Sbjct: 2 PSSEPSELERQIVLYLEDLARAGNSEHSIRAYESDLRQFLAFLSPPDLAPPAPAAIDLLI 61 Query: 116 TKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175 + +G+ + + + L ++R LF++ +R+ V +N V PK + T Sbjct: 62 LREWLAGLYRDDLSAVTLRRKLAAVRGLFRFLLREGVVPLNVACLVRTPKAPKKLPEVMT 121 Query: 176 KEDMQQF-------KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228 + + + ++ R FE L G+R S+ ++ + ++ + Sbjct: 122 ADQVNSLIDGVGGVELERPHPARDRAIFELLYGCGIRVSELAGLNLEDIDRTEGWLRVRG 181 Query: 229 TGT-IITVELP----DGFMKLLAMTPIGKE--TFFINNDKQKMNATQFSIWFKAKAT--- 278 G V LP + LA P+ +E F+N+ + ++ S K AT Sbjct: 182 KGKKERQVPLPGQAAQSLERYLAERPVAREQPAVFVNHRRARLTTRGISGIVKLYATYLS 241 Query: 279 -KAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 G++ H R AT GA + G + + YT+ Sbjct: 242 NDPGIH--PHSFRHAYATHLLADGADLRAIQELLGHARLSTTQKYTQ 286 >gi|118467405|ref|YP_888043.1| site-specific tyrosine recombinase XerD [Mycobacterium smegmatis str. MC2 155] gi|118168692|gb|ABK69588.1| tyrosine recombinase XerD [Mycobacterium smegmatis str. MC2 155] Length = 318 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 42/266 (15%), Positives = 89/266 (33%), Gaps = 33/266 (12%) Query: 90 NSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES-RKHTPSSAIQFLTSMR------- 141 + R Y + + ++ G D ++ + + + R+ P + + L+++ Sbjct: 35 SYRRDLRRYAEHLRQR-GIDDLARVAESDVSDFLVALRRGDPDAGVTALSAVSAARAVVA 93 Query: 142 --VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF--------KSFWSEGSQ 191 L ++A + + +V+ P + T +++ ++ + Sbjct: 94 VRGLHRFAAAEGLTENDVARAVKPPTPSRRLPKSLTLDEVLALLEAAGGDSEADSPLTLR 153 Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFMKLL----- 245 R E L +G R S++ V + + K G V + + L Sbjct: 154 NRALLELLYSTGARISEAVGLDVDDVDTQARSVLLHGKGGKQRLVPIGRPAVSALDAYLV 213 Query: 246 ------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATIS 297 A G F+N +++ + A +AG+ S H +R AT Sbjct: 214 RGRPDLARRGRGTPAIFLNARGGRLSRQSAWQVLQDSAERAGIASAVSPHTLRHSFATHL 273 Query: 298 ADAGATAHELMATYGWKTVDQAETYT 323 D GA + G +V + YT Sbjct: 274 LDGGADVRVVQELLGHASVTTTQIYT 299 >gi|15672627|ref|NP_266801.1| integrase-recombinase [Lactococcus lactis subsp. lactis Il1403] gi|12723549|gb|AAK04743.1|AE006297_6 integrase-recombinase [Lactococcus lactis subsp. lactis Il1403] Length = 312 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 42/302 (13%), Positives = 94/302 (31%), Gaps = 36/302 (11%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG-----DFDYRKITTKHIR---SG 122 + L+ EY G+ + + +E + D+ I + D I H + S Sbjct: 4 FEQLVKEYLLELKLGNYSKKTMAVYEQHIDKFIDFYKKEICKEMDIYAINKMHYKLFISQ 63 Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 + + L S + + + +R++ + +P S++ K + + + ++++ Sbjct: 64 LLDNSLRATYINAILKSNKAFYSYLIREQVLKTSPMDSIKLLKETKQALTTFNDDEVKAM 123 Query: 183 KSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238 + W+ + + + L +G+R S+ L + + K V + Sbjct: 124 LNVWNFNTYLNARNKCIIAVLADTGIRISELINIKDSDLTDQYIRV-LGKGDKWRVVPIS 182 Query: 239 DGFMKLLAMTPI-------------------GKETFFINNDKQKMNATQFSIWFKA---- 275 + LL E F N + T + Sbjct: 183 NELNYLLTKYKRLRDNHFNKIRNRNGKVRELDSELFLGNTGRSIKTITNIEVMITQTGLQ 242 Query: 276 KATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335 +A V S H R + S + G + G + + Y + +L K Sbjct: 243 ANVRASVRCSPHQFRHYWTCKSLELGQDIFTISKLLGHTNLSTTQIYLQKLTNEQLISKA 302 Query: 336 SR 337 + Sbjct: 303 VK 304 >gi|307700994|ref|ZP_07638019.1| site-specific tyrosine recombinase XerD [Mobiluncus mulieris FB024-16] gi|307613989|gb|EFN93233.1| site-specific tyrosine recombinase XerD [Mobiluncus mulieris FB024-16] Length = 319 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 44/284 (15%), Positives = 92/284 (32%), Gaps = 32/284 (11%) Query: 85 GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKHTPSS--------A 133 + ++ +++ + + G ++T + V + +S Sbjct: 28 RGASPHTIAAYQRDLQRYVAYLQILGRDTLAQVTEIDLEGFVRALGDGFASFPPLGSTSV 87 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG---- 189 + L + R ++ + N SV+ K E+M+ + S Sbjct: 88 RRCLAAARSWHRYLFDSGSLGANVASSVKPAKLPRRLPETLNLEEMEALLAAASSPGDSN 147 Query: 190 -SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELP-----DGF 241 + R EFL SG R S++ + + ++ G + + Sbjct: 148 SLRDRALLEFLYASGARISEAMNLVLDDIDFETEPALVRLFGKGRKERISMLGHQACQAL 207 Query: 242 MKLL-AMTPI------GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKF 292 L + P + F+N + M+ +A A +A +++ H +R Sbjct: 208 QAYLVRVRPTLAEKGQSRGRVFLNTYGKPMSRQTAWAIIQAAAKRAQIDRPVHPHTLRHC 267 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336 AT GA + G +V E YTK + ++ L + S Sbjct: 268 FATHLLQGGADIRVVQELLGHASVTTTEIYTKVSKQMLLEVYAS 311 >gi|312621006|ref|YP_003993734.1| site-specific recombinase, phage integrase family [Photobacterium damselae subsp. damselae] gi|311872727|emb|CBX86821.1| site-specific recombinase, phage integrase family [Photobacterium damselae subsp. damselae] Length = 499 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 56/327 (17%), Positives = 116/327 (35%), Gaps = 13/327 (3%) Query: 9 PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYI--NSPRK 66 P + + G+ +Y R +++ ++ + + L E++ S Sbjct: 26 PSLVVQVFPKGRKVYQVRTRTDNKVKTRTLGDTATLALKEARLMAKKQVNEWLEAQSDIS 85 Query: 67 KPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVES 125 + TL + K + ++++ Y ++ GD+ + + + E+ Sbjct: 86 QSPTLGTFMQCEWKEQVFNRWKPRTQVTASHYMTKWLLPSLGDYALVNLGYREVNEWFEN 145 Query: 126 RKHT-PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER-PKRKTEGIRPWTK-----ED 178 T A + L ++ +F A+R Y +PC + R PK++ ++ E Sbjct: 146 MSLTTKGGANRALDVLKSVFVLAMRLGYCHHDPCRLINRNPKKRFNRFLSRSELKNLGEI 205 Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238 + + +S + Q LL +G R S+ ++ N+ + KTG TV L Sbjct: 206 LARLESESASYQQQANIVRMLLLTGCRVSEILTLQWTMIKPNLIDLPDSKTGAR-TVYLS 264 Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATIS 297 + +L + P F K T S +++ A V + H +R A+ + Sbjct: 265 EDANAILRLQPRMTPWVFPAPRTDK-PYTSISAFWQKVRNLANVPEVRIHDLRHTFASYA 323 Query: 298 ADAGATAHELMATYGWKTVDQAETYTK 324 A G + + G Y Sbjct: 324 ALQGNSVPMIAKMLGHSRFSMTLRYAH 350 >gi|30019424|ref|NP_831055.1| DNA integration/recombination/invertion protein [Bacillus cereus ATCC 14579] gi|229126686|ref|ZP_04255698.1| DNA integration/recombination/invertion protein [Bacillus cereus BDRD-Cer4] gi|29894968|gb|AAP08256.1| DNA integration/recombination/invertion protein [Bacillus cereus ATCC 14579] gi|228656626|gb|EEL12452.1| DNA integration/recombination/invertion protein [Bacillus cereus BDRD-Cer4] Length = 370 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 48/286 (16%), Positives = 96/286 (33%), Gaps = 39/286 (13%) Query: 77 EYRKS---AHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH---T 129 EY +S S+ + + + Y + +II G+ K+T+ H+++ V S + Sbjct: 69 EYLESWFNTKRHSVGIQTAKVLKGYLNSRIIPSLGNIKLAKLTSLHMQNYVNSLRDEGLK 128 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 + + + +R + A+ E + N + PK E + W ++++Q F +G Sbjct: 129 RGTIEKIIKVIRNSLEHAIDLELITKNVAAKTKLPKADKEELTVWNEQEVQLFLKAAQDG 188 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--------------NNIFSIKTQKTGTIITV 235 + + F L +G+R + + + + + KT + + Sbjct: 189 -RYSIVFHMALVTGMRQGELLGLRWKDVDLEKGHLIISQTLSHDGKTFLVGGKTKSSLRK 247 Query: 236 ELPDG-----FMKLLAMTPIGK----------ETFFINNDKQKMNATQFSIWFKAKATKA 280 L K A+ K + +N A KA Sbjct: 248 ILLPASTIAKLKKHRAVILKEKLSQGEEYQDNDLVMCTPSGTPINPANVRRSLNALIQKA 307 Query: 281 GVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324 V K H +R AT+ G + G + +TY+ Sbjct: 308 AVPKIRFHDLRHTHATLLLAKGVNVKVISERLGHSNIKITLDTYSH 353 >gi|16800384|ref|NP_470652.1| hypothetical protein lin1316 [Listeria innocua Clip11262] gi|34222949|sp|Q92C75|XERC_LISIN RecName: Full=Tyrosine recombinase xerC gi|16413789|emb|CAC96547.1| codV [Listeria innocua Clip11262] Length = 300 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 42/273 (15%), Positives = 100/273 (36%), Gaps = 27/273 (9%) Query: 77 EYRKSAHWGSLAVNSRISFESYFDQIIRKSGD---FDYRKITTKHIRSGVESRKHT---P 130 +Y S + + ++ ++E+ R + +Y+++T +R + K Sbjct: 13 DYLHSER--NYSEHTSTAYENDLSDFRRFLNEQAIIEYQQVTFLDVRIYLTELKQKSFSR 70 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ-----FKSF 185 ++ + ++S+R + + +R+ + NP V K + + + E+M+ ++ Sbjct: 71 TTVARKISSLRSFYTFLLRENVITENPFTYVSHAKNQLRLPKFFYSEEMEALFQVVYEDN 130 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVE-------- 236 + + R+ E L +G+R S+ + L + +I K V Sbjct: 131 ETLTLRDRVILEVLYGTGIRVSECAGIMLSDLDTSYQAILIRGKGNKERYVPFGAYAEDA 190 Query: 237 LPDGFM---KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRK 291 + D +L+ ++ IN+ + +KA + + H +R Sbjct: 191 ITDYLSGRIELMTRFKKTHDSLLINHYGDPLTTRGIRYCLTKIISKASLTRKIHPHMLRH 250 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTK 324 AT + GA + G ++ + YT Sbjct: 251 TFATDLLNNGADMRTVQELLGHASLSSTQIYTH 283 >gi|94311976|ref|YP_585186.1| phage integrase [Cupriavidus metallidurans CH34] gi|160898186|ref|YP_001563768.1| integrase family protein [Delftia acidovorans SPH-1] gi|93355828|gb|ABF09917.1| tyrosine-based site-specific recombinase [Cupriavidus metallidurans CH34] gi|160363770|gb|ABX35383.1| integrase family protein [Delftia acidovorans SPH-1] Length = 415 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 56/320 (17%), Positives = 115/320 (35%), Gaps = 26/320 (8%) Query: 45 PAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-II 103 +++ + + R P T+K L +++ + +++ +++ D+ I+ Sbjct: 91 QEWLAEVRRGGDPSAAKAAARSAP-TVKELCTKFMEDYSKQRNKPSTQRGYQAVIDRCIV 149 Query: 104 RKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVA--INPCLSV 161 G + + + + ++ H P+ A + + MR +F A + NPC V Sbjct: 150 PMLGRLKVQDVKRPDVATAMKKMAHKPAEANRAFSVMRKMFNLAEVWGHRPDGTNPCRHV 209 Query: 162 ERPKRKTEGIRPWTKEDM----QQFKSFWSEGSQPR---LAFEFLLYSGLRCSDSCRAGV 214 + + EDM ++ + +EG + LA R S+ Sbjct: 210 PM-YPNGKATHLISDEDMGKLFRRLEHIEAEGLENYVIPLAIRLQFEFAGRRSEIVTLRW 268 Query: 215 Q--HLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFI----NNDKQKM-NAT 267 L N KTG + + + +LL+ P + T ++ ++ + + Sbjct: 269 DWVDLDNRRVVWPDSKTGGMSK-PMSEEAYRLLSTAPRQEGTPYVLPSPSHPGKHLTTGE 327 Query: 268 QFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 + W +A + HG+R SAT A++G MA KTV Y D Sbjct: 328 YYGGWSRALKAAGATHVGTHGIRHRSATDIANSGIPVKVGMALTAHKTVAMFMRYVHTED 387 Query: 328 RIRLGIKNSRRISSVVDSDD 347 R+ + +V + Sbjct: 388 ------DPVRKAAELVANRR 401 >gi|17547341|ref|NP_520743.1| integrase protein [Ralstonia solanacearum GMI1000] gi|254241660|ref|ZP_04934982.1| hypothetical protein PA2G_02364 [Pseudomonas aeruginosa 2192] gi|17429644|emb|CAD16329.1| integrase-tyrosine recombinase protein [Ralstonia solanacearum GMI1000] gi|126195038|gb|EAZ59101.1| hypothetical protein PA2G_02364 [Pseudomonas aeruginosa 2192] Length = 400 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 58/325 (17%), Positives = 106/325 (32%), Gaps = 33/325 (10%) Query: 44 IPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-I 102 + A + +K T+K L +++ + +++ ++S D+ I Sbjct: 73 LAQEWLAQVRRGGDPAADKAQARKAPTVKELCTKFMEDYSKLRNKPSTQEGYQSVIDRNI 132 Query: 103 IRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVA--INPCLS 160 + G + + + ++ H P+ A + + MR +F A Y NPC Sbjct: 133 VPMIGRMKVQDVKRPDVAGMMKKMTHKPADANRTFSVMRRMFNLAEVWGYRPDGTNPCRH 192 Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWS-----------EGSQPRLAFEFLLYSGLRCSDS 209 V + + EDM + RL FEF R + Sbjct: 193 VPMFP-NGKATHLISDEDMGKLFRHLEHLEAEGMESYVIPLAIRLQFEFA----GRRGEI 247 Query: 210 CRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFI----NNDKQK 263 + N KTG + + + +LL+ P + ++ N Q Sbjct: 248 VTLQWDWVDFENRRVVWPDSKTGGMSK-PMSEEAYRLLSTAPRRDDCPYVLPSPNRPGQH 306 Query: 264 MNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 + ++ + AG HG+R SAT A++G MA KTV Y Sbjct: 307 LTTGEYYNGWSRALKAAGAAHVGTHGIRHRSATDIANSGIPVKVGMALTAHKTVAMFMRY 366 Query: 323 TKGADRIRLGIKNSRRISSVVDSDD 347 D R+ + +V + Sbjct: 367 VHTED------DPVRKAAELVANRR 385 >gi|259909532|ref|YP_002649888.1| site-specific tyrosine recombinase XerC [Erwinia pyrifoliae Ep1/96] gi|224965154|emb|CAX56686.1| site-specific tyrosine recombinase [Erwinia pyrifoliae Ep1/96] Length = 344 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 54/304 (17%), Positives = 108/304 (35%), Gaps = 31/304 (10%) Query: 64 PRKKPTTLKWLI---SEYRKSAHWGS--LAVNSRISFESYF---DQIIRKSGDFDYRKIT 115 P P +L L+ ++R+ +W L V + + ++ I + D + Sbjct: 24 PAHDPKSLYALLLRFVKWRRERNWSETTLKVQTHHGYRFICWAQERGIHHAADVTRPVLE 83 Query: 116 T--KHIRSGVESRKH--TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171 +H+ + +P + L ++V F+W +Q + NP +E P+ + Sbjct: 84 RWQRHLYRYRKGNGEPLSPRTQRTALQPLQVWFRWLAKQNLILANPAADLELPRLEKHLP 143 Query: 172 RP-WTKEDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGV--QHLQNNIFSI 224 R + E ++ + G + R E L +G+R + R I +I Sbjct: 144 RTILSVEQVEDIVNLCDLNTLQGMRDRALLELLWSTGIRRGEVARLETWSADFSRKILTI 203 Query: 225 KTQKTGTIITVELPDGFMKLLA----------MTPIGKETFFINNDK-QKMNATQFSIWF 273 K + + + + L + G + F+ D + A + Sbjct: 204 VQGKGKQDRVIPVGERALWWLRHYLHEVRPEIVAVAGCKALFVAMDGVAGLTANGITHAV 263 Query: 274 KAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 AG+ K S H R AT + GA + A G ++V+ + YT+ + + Sbjct: 264 VPYLRAAGIEKGSCHLFRHAMATQMLENGADLRWIQAMLGHRSVESTQIYTQVSIKALQA 323 Query: 333 IKNS 336 + S Sbjct: 324 VHAS 327 >gi|168179463|ref|ZP_02614127.1| phage integrase [Clostridium botulinum NCTC 2916] gi|182669587|gb|EDT81563.1| phage integrase [Clostridium botulinum NCTC 2916] Length = 387 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 60/325 (18%), Positives = 107/325 (32%), Gaps = 54/325 (16%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF-----DYRKITTKHIRSGVES 125 L L+ + + +S +E + I+ S F D + I + + + S Sbjct: 66 LGELMHTWLFEIMRVKVKPSSFERYEGIYRNYIKNSQLFGLKLADLKTIQVQRYYNELYS 125 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS----VERPKRKTE-GIRPWTKEDMQ 180 T S +R +AV + Y+ NPCL + K K E I +T +++ Sbjct: 126 AGKTSSVIENLNKLLRTFLNYAVNEGYILKNPCLGSKIIIPGNKDKKENEIEIFTDKEIT 185 Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK------------ 228 K EG + + L SGLR + + + F I+ K Sbjct: 186 ALKKAL-EGHRLKCLILLALGSGLRQGELLALRWSDINFDTFEIQVNKSIKHVKIISPDG 244 Query: 229 TGTIITV-------------ELPDGFMKLLAMTP--------------IGKETFFINNDK 261 TG T+ +P + +L I K F N Sbjct: 245 TGERKTIEQSPKSKTSNRIVPIPSKLINVLEEHKALQDIEKKAAGSSYIDKNLIFANEIG 304 Query: 262 QKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVD-QA 319 + + +K AG+ +K H +R AT + G + G K + A Sbjct: 305 RPILVKNIFRIYKNILISAGIKHKKFHSLRHTYATKLFEKGVQLKTVQKLLGHKDISITA 364 Query: 320 ETYTKGADRIRLGIKNSRRISSVVD 344 + YT + + + +++ + D Sbjct: 365 DIYTHVMPKEK--VLAVDKLNDLFD 387 >gi|148284908|ref|YP_001248998.1| phage-related integrase [Orientia tsutsugamushi str. Boryong] gi|146740347|emb|CAM80771.1| phage-related integrase [Orientia tsutsugamushi str. Boryong] Length = 247 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 41/200 (20%), Positives = 77/200 (38%), Gaps = 8/200 (4%) Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 ++A L ++R +F A++ + NP L +E+ K + R + ++M +F + Sbjct: 18 ATANALLATLRTIFNKAIKWGLIENNPTLGIEQHKLQARERR-LSYDEMGRFLQVLCGEA 76 Query: 191 QP--RLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLA 246 P R LY+G R S+ ++ I+ I K G + L D M++L Sbjct: 77 SPLIRDFALLALYTGARKSNVLEMEWDNIDFERKIWHIPKTKNGKAQNIPLTDEAMEILQ 136 Query: 247 MTP-IGKETFFINNDKQKMNATQFSI-WFKAKATKAGV-NKSAHGVRKFSATISADAGAT 303 I + + + + +K KA + N H +R+ A+ DAG + Sbjct: 137 ARKLISTSKWVLPSSTSESGHLSHPNTAWKIICEKASIKNFRIHDLRRTFASCMGDAGES 196 Query: 304 AHELMATYGWKTVDQAETYT 323 + + YT Sbjct: 197 QRTISIALNHINPNSTIPYT 216 >gi|50122330|ref|YP_051497.1| site-specific tyrosine recombinase XerC [Pectobacterium atrosepticum SCRI1043] gi|50122339|ref|YP_051506.1| site-specific tyrosine recombinase XerC [Pectobacterium atrosepticum SCRI1043] gi|49612856|emb|CAG76306.1| probable integrase/recombinase protein [Pectobacterium atrosepticum SCRI1043] gi|49612865|emb|CAG76315.1| probable integrase/recombinase [Pectobacterium atrosepticum SCRI1043] Length = 344 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 42/289 (14%), Positives = 100/289 (34%), Gaps = 32/289 (11%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQI---IRKSGDFDYRKITTK--------- 117 TL+ + Y + + + + ++ + G +++ Sbjct: 20 TLRQYTTAYLEHLTATNHSPRTVEAYSERLRPFVTWCEERGLTQAAQVSLSVLEAYQRHL 79 Query: 118 HIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI-RPWTK 176 H + + + L+++R LF+W +++ ++ NP + PK + + ++ Sbjct: 80 HGYRKADGKPLAQGGQLNRLSAIRGLFRWLLQRHHILYNPAEQITLPKAEKRLPAQILSE 139 Query: 177 EDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTG 230 E+ + G + R E L +GLR S+ + + + ++ K Sbjct: 140 EETEAVMEAQDTDTLTGLRNRAVLEMLWSTGLRRSELSGLMLADVDVGRGVLVVRQGKGN 199 Query: 231 TIITVELPDGFMKLLAM----------TPIGKETFFINNDKQKMNATQFSIWF-KAKATK 279 V + + + T F+ +++ + +I +A Sbjct: 200 KDRVVPVGLRALVWVQRYLDAVRPRLTTKHDSGYLFVTIWGKRLARSTLTILAGRAIRDD 259 Query: 280 AGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 A + K+ H R AT + GA + A G + ++ + YT+ A Sbjct: 260 AHLKKAGACHVFRHSMATQMLERGADTRHIQAILGHEKLETTQIYTRVA 308 >gi|288870073|ref|ZP_06112814.2| integrase/recombinase, phage integrase family [Clostridium hathewayi DSM 13479] gi|288868544|gb|EFD00843.1| integrase/recombinase, phage integrase family [Clostridium hathewayi DSM 13479] Length = 376 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 42/268 (15%), Positives = 85/268 (31%), Gaps = 21/268 (7%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRS-GVESRKHTPS 131 I + S + N+ + ++ G D + ++ E R S Sbjct: 94 IRMFVASKKAVNRQTNTLKQYTREICNMLDFLGKRLEDITGMDLRYYYGVMRERRGIKMS 153 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191 + L + + + + ++ V+ NP V K + +P++ +M+ ++ SE + Sbjct: 154 TMQTRLHYLSSFWDFMITEDLVSSNPVKKVGLLKIEKTIKKPFSAAEMEALRTSCSE-LR 212 Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG----FMKLLA 246 R EFL +G+R S+ V ++ + K L DG + L Sbjct: 213 DRALVEFLYSTGVRVSELVSLNVGDIEMGKQELIVYGKGSKERKTYLTDGAKFYLRRYLR 272 Query: 247 MTPIGKETFFINNDKQK-----------MNATQFSIWFKAKATKAGVNK-SAHGVRKFSA 294 + + + + +AGV H R+ A Sbjct: 273 TRCENEGMTMEELQGRPLFATLDRPHGRLTVAGVQYMLRQLGRRAGVEGVHPHRFRRTIA 332 Query: 295 TISADAGATAHELMATYGWKTVDQAETY 322 T G ++ G + +D Y Sbjct: 333 TDLLSRGMPIEQVKEFLGHEKLDTTMIY 360 >gi|257869686|ref|ZP_05649339.1| site-specific recombinase [Enterococcus gallinarum EG2] gi|257803850|gb|EEV32672.1| site-specific recombinase [Enterococcus gallinarum EG2] Length = 299 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 44/281 (15%), Positives = 100/281 (35%), Gaps = 36/281 (12%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIR---SGVE 124 ++LI E + ++ +++ + + +++SG+ D+ I + +R S + Sbjct: 11 FRYLIVE-------RGYSDKTKSAYQEDMEDFFRFLKESGNEDFLAIDHRDVRVYLSFLN 63 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 R ++ +S + + S+R + + + E + NP + K+ + R + +++M+ Sbjct: 64 ERNYSRNSISRKMASLRSFYHFLTKHEVIKENPFAYIHLKKKNAKLPRFFYEKEMEALFE 123 Query: 185 ----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPD 239 + R E L SGLR S+ + + N + K V Sbjct: 124 SVKGHEPLQQRNRALLEILYGSGLRVSECSNLTLSDVDWENGVLLIHGKGNKDRYVPFGS 183 Query: 240 GFMKLLA------------MTPIGKETFFINNDKQKMNATQ----FSIWFKAKATKAGVN 283 + L E F+N+ + AT + + + + ++ Sbjct: 184 YAQEALRDYVSAGRQQLMEKHHKRHEIVFVNHLGDGITATGIEYVLNQIIRKSSLDSKIH 243 Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R AT + GA + G + + Y Sbjct: 244 --PHMLRHTFATHLLNHGADMRTVQELLGHANLSTTQIYAH 282 >gi|312621873|ref|YP_004023486.1| integrase family protein [Caldicellulosiruptor kronotskyensis 2002] gi|312202340|gb|ADQ45667.1| integrase family protein [Caldicellulosiruptor kronotskyensis 2002] Length = 310 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 39/279 (13%), Positives = 89/279 (31%), Gaps = 20/279 (7%) Query: 64 PRKKPTTLKW--LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121 P++ + W + ++ + + +E + + + + K Sbjct: 2 PKRSVIKMDWREALQQFLFYKRAEGRSELTLRDYEYHVTHFFDLYPNCFHDEQQLKKCLY 61 Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM-Q 180 S+ P++ LT ++ FKW V + + NP + PK+K EG ++ + Sbjct: 62 EYLSQPIKPATYNLRLTYLKAFFKWCVEENILKSNPLEGL--PKKKAEGRIVNIDTEILE 119 Query: 181 QFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI----KTQKTGTI 232 + + G + L +G+R ++ ++H + KT Sbjct: 120 KLLKLPDKNTFCGLRDYALILLTLDTGIRPKEAFSLLIEHFDFKTLQVFIPSDAAKTRVS 179 Query: 233 ITVELPDGFMKLLAMTPI-------GKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS 285 + + + K F + + ++ + + K GV Sbjct: 180 RVLPILPVTANAVKKLIAVRHPEWDEKVPVFCTVTGRPLTRDIWNDRMEMYSKKLGVKIR 239 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 + +R A + G L T G T++ + Y Sbjct: 240 PYDLRHTFALLYLKNGGYELSLQKTLGHTTLEMTKRYVH 278 >gi|261379271|ref|ZP_05983844.1| tyrosine recombinase XerC [Neisseria subflava NJ9703] gi|284797703|gb|EFC53050.1| tyrosine recombinase XerC [Neisseria subflava NJ9703] Length = 298 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 44/267 (16%), Positives = 94/267 (35%), Gaps = 17/267 (6%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH----IRSGVESRKHTP 130 + Y K+ + ++ ++ +++R D + T+ + + + + Sbjct: 11 LERYLKTLSQQGKSQHTVSAYRRDLSELMRLLPDNLENGLPTRRDFVAVLKKLSQKGLSE 70 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 SS + L++ R W V+ E + +P +++ P+ + +E + Sbjct: 71 SSLARKLSAWRQYCSWLVQIEVMESDPTFNMKAPRLPERLPKALLQEPLNHILDHAPVDD 130 Query: 191 ----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVEL----PDGF 241 + + FE + SGLR S+ + + + + K G V L Sbjct: 131 ELDVRDKAMFELMYGSGLRLSEIQGLNLNSIVLDEGWVSVNGKGGKQRQVPLVGKSIAAL 190 Query: 242 MKLL--AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATIS 297 L + G++ F N + ++ Q +A A + G + S H +R AT Sbjct: 191 RDYLAVRIAKEGEQALFTNKNGGRLGQRQIQKRLQAWAVRVGSASHISPHMMRHSYATHL 250 Query: 298 ADAGATAHELMATYGWKTVDQAETYTK 324 A + G + + YTK Sbjct: 251 LQASGDIRAVQELLGHSNLSATQVYTK 277 >gi|89098652|ref|ZP_01171534.1| tyrosine recombinase [Bacillus sp. NRRL B-14911] gi|89086614|gb|EAR65733.1| tyrosine recombinase [Bacillus sp. NRRL B-14911] Length = 260 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 36/237 (15%), Positives = 83/237 (35%), Gaps = 20/237 (8%) Query: 110 DYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169 D + + + +K + SA + ++S+R +K+ R++ NP +V PK + Sbjct: 11 DVEYFDVRLYLTRLYEQKLSRKSAARKISSLRSFYKFLAREKLANDNPFSAVSLPKLEKR 70 Query: 170 GIRPWTKEDMQQFKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK 225 + +E++ G + + E L +G+R S+ + ++ + + ++ Sbjct: 71 LPEFFYEEELNCLFESCETDSPLGKRNKALLELLYATGMRVSECSQISLKDIDMALSTVL 130 Query: 226 TQKTGTI-------------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIW 272 G + + + +G +LL + F+N + Sbjct: 131 VHGKGQKDRYIPFGSFAQDALELYITEGRKELLTGR-ESHDRLFVNFRGGPLTPRGIREI 189 Query: 273 FKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 K+ + + H +R AT GA + G + + YT + Sbjct: 190 LNKMIQKSSLEGTIHPHMLRHSFATHLLSNGADMRTVQELLGHAFLSSTQVYTHVTN 246 >gi|253581963|ref|ZP_04859187.1| conserved hypothetical protein [Fusobacterium varium ATCC 27725] gi|251836312|gb|EES64849.1| conserved hypothetical protein [Fusobacterium varium ATCC 27725] Length = 339 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 42/262 (16%), Positives = 103/262 (39%), Gaps = 10/262 (3%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129 T+ + + + K H+ L+ S+ ++ES + + D ++ T H++ + + + + Sbjct: 70 TIDDIYNRW-KEMHFKKLSKLSQSNYESNYTHF-KPLKDRKIAELKTIHLQEFMNNLELS 127 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE-GIRPWTKEDMQQFKSFWSE 188 SS + LFK+A++ + + + +E K + + +T E++ + + Sbjct: 128 ESSKRNIKRMLNQLFKYALKYDIIEKDYTQFIELGKVEKILERKIFTDEEISKLWKYKEL 187 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-KT--GTIITVELPDG-FMKL 244 ++Y+G+R + Q + +I+ KT G + + + Sbjct: 188 EWVD--TILIMIYTGMRVGELLTIKNQDIDLENRTIRGGIKTDAGKNRLIPINMKILPFI 245 Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATA 304 E ++ ++ ++ + + +FK K + + H R A++ ++A A Sbjct: 246 KTRMTPSNEYLILSRKEKNLSYSSYITYFKKLMKKLDMEHTIHDCRHTFASLLSNADANK 305 Query: 305 HELMATYGWKTVDQAE-TYTKG 325 + G D E YT Sbjct: 306 VSIAKIIGHSNYDMTEKIYTHK 327 >gi|330993350|ref|ZP_08317285.1| Tyrosine recombinase xerD [Gluconacetobacter sp. SXCC-1] gi|329759380|gb|EGG75889.1| Tyrosine recombinase xerD [Gluconacetobacter sp. SXCC-1] Length = 307 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 49/289 (16%), Positives = 93/289 (32%), Gaps = 28/289 (9%) Query: 75 ISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITT-----KHIRSGVESRKH 128 I + + A A+N+ ++ + T + +G+ + Sbjct: 6 IDAFLEMQAAERGAALNTLAAYARDLADMTAVLHAGGVTARTAGEADLRAYLAGLAGQGL 65 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 + + L+ ++ F + R+ NP +E P+ T R ++ +++ + + Sbjct: 66 AARTQARRLSCLKQYFLFLAREGMRPDNPAALLEAPRLDTPLPRFLSEGEVEALLAACAP 125 Query: 189 GSQP-----------RLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVE 236 R A E L SGLR S+ + L + K G V Sbjct: 126 EPDATPARQRRLQVARAALEMLYASGLRISELLALPRRALDAAPGMMLVRGKGGRERMVP 185 Query: 237 L----PDGFMKLLAMTPIGKETFFINNDK--QKMNATQFSIWFKAKATKAGVN---KSAH 287 + + L+ + F + M F A +AG++ S H Sbjct: 186 MSARAREAARALMEADAARRSPFLFPGRGVARPMTRQGFDRILHDVALRAGLDPARLSPH 245 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG-ADRIRLGIKN 335 +R AT GA L G + + YT DR+R + + Sbjct: 246 VLRHSFATHLLAHGADLRALQVLLGHADIATTQIYTHVMLDRLREAVAD 294 >gi|260892325|ref|YP_003238422.1| integrase family protein [Ammonifex degensii KC4] gi|260864466|gb|ACX51572.1| integrase family protein [Ammonifex degensii KC4] Length = 414 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 49/293 (16%), Positives = 94/293 (32%), Gaps = 43/293 (14%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH 128 TL ++ + ++ G L + ++E+ I+ G R +T +++ S Sbjct: 99 TLGEWLATWLETYKKGKLRPTTLANYETVIRAYILPSLGSVPLRSVTPASLQALYNSLSA 158 Query: 129 TPSSAIQFL---TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI-RPWTKEDMQQFKS 184 SA + K AV+ + NP + E PK K RP +E+++ F Sbjct: 159 RGLSARTVRLVHVVLNACLKQAVKNGLLVRNPAEATEPPKLKRRVPVRPLAREEVEAFLK 218 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT--------------- 229 + G + AF L +GLR + + + ++ +++ Sbjct: 219 -AARGERLYPAFALALKTGLRRGEVLGLKWEDVDLERGVLRVRRSLVEAKDPETGKVRLV 277 Query: 230 -------GTIITVELPDGFMKLLAMTPI--------------GKETFFINNDKQKMNATQ 268 + TV L + LL F + + Sbjct: 278 FQEPKTEKSRRTVPLTRDVVALLKSHKARQNEEKLYFGEAYEDNGLVFCTELGKPIWPRN 337 Query: 269 FSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320 F F + KAG+ H +R AT+ +G + G + + Sbjct: 338 FLRAFHSVLKKAGLERHRFHALRHTFATLLLASGEELKNVQELLGHERISTTA 390 >gi|254246904|ref|ZP_04940225.1| Phage integrase [Burkholderia cenocepacia PC184] gi|124871680|gb|EAY63396.1| Phage integrase [Burkholderia cenocepacia PC184] Length = 355 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 43/279 (15%), Positives = 88/279 (31%), Gaps = 30/279 (10%) Query: 75 ISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV---ESRKHTP 130 I+ Y + H L+ ++ ++ D++ + + +T +R V + + Sbjct: 55 IAAYLSNLKHVRQLSEHTLRAYTHELDELKKLAAGRPLDALTAADMRGAVVRGHAAGLSA 114 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 S L++ R ++W ++ + NP V PKR+ + + +D G+ Sbjct: 115 RSISHRLSAWRAFYRWFAQRVEMPANPVAGVRAPKREKSLPKALSVDDAVALMDAPLAGT 174 Query: 191 ----QPRLAFEFLLYSGLRCSDSCRA-------------GVQHLQNNIFSIKTQKT---- 229 + E SGLR ++ G L +++ + Sbjct: 175 TESIRDHAILELFYSSGLRLAELVGLDVRYTQADGYRSAGWLDLAEAEVTVRGKGNKERK 234 Query: 230 ---GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-- 284 G+ L F++ +M+ K A AG+ Sbjct: 235 VPVGSKAIDALNAWLAVRGEFVKHDPHPLFVSVRGNRMSPGVVRERVKRAALAAGIPANV 294 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 H +R AT + + G +V + YT Sbjct: 295 HPHVLRHSFATHVLQSSGDLRAVQELLGHASVAATQIYT 333 >gi|327313166|ref|YP_004328603.1| tyrosine recombinase XerC [Prevotella denticola F0289] gi|326944725|gb|AEA20610.1| tyrosine recombinase XerC [Prevotella denticola F0289] Length = 292 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 42/263 (15%), Positives = 98/263 (37%), Gaps = 23/263 (8%) Query: 85 GSLAVNSRISFESYFD---QIIRKSGD-FDYRKITTKHIRSGVESRKHTPSSA---IQFL 137 + + + IS+ + + ++ G + + T +R +E ++A + + Sbjct: 13 RNYSPMTVISYRKDLEAFERFCQELGPQITWESVDTDVVRDWMEDMMDKGNAASSVNRRI 72 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK--SFWSEGSQPRLA 195 +++R +++A+R V+ +P ++ P+R+ + + +M+Q + W++G LA Sbjct: 73 SALRSFYRFALRCGLVSKDPVHGLQGPRRQKPLPQFLKESEMEQLLDPAMWTDGYGDVLA 132 Query: 196 FEFL---LYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLAM---- 247 + +G+R S+ + + + +K T K + + LA Sbjct: 133 RTLIVTFYETGIRLSELTGLDDRDVDDVTCELKVTGKRNKQRIIPFGKELEETLAAYRCV 192 Query: 248 ----TPIGKETFFINNDKQKMNATQFSIWFKA--KATKAGVNKSAHGVRKFSATISADAG 301 T F ++M Q K ++ H +R AT + Sbjct: 193 RDARTGDSSPALFRTEKGERMTNAQVRALVKKNLSRVSTLKKRTPHVLRHTFATAMLNHE 252 Query: 302 ATAHELMATYGWKTVDQAETYTK 324 A + G +++ E YT Sbjct: 253 AGLESVKKLLGHESLSTTEIYTH 275 >gi|227551195|ref|ZP_03981244.1| site-specific recombinase XerD [Enterococcus faecium TX1330] gi|227179663|gb|EEI60635.1| site-specific recombinase XerD [Enterococcus faecium TX1330] Length = 314 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 47/281 (16%), Positives = 98/281 (34%), Gaps = 34/281 (12%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFE---SYFDQIIRKSGDFDYRKITTKHIRSGVESRK 127 L++LI E + ++ ++E +F + +SGD D K +R + + Sbjct: 24 LRYLIVE-------RGYSEKTKEAYEEDILHFKHFLEESGDADLLKAEYFTVRVYLSALA 76 Query: 128 H-----TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 + +S + + S+R +++ +++E + NP V K+ R + + +MQ Sbjct: 77 DHRPSYSRNSISRKIASLRSFYQYLLKEEVIKENPFSYVHLKKKNLRLPRFFYENEMQAL 136 Query: 183 KSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVEL 237 + R E L SG+R S+ V + ++ + K L Sbjct: 137 FDSVAGDSPLDLRNRALLEVLYGSGIRLSECSNLLVSDIDFDSEVMLIHGKGNKERYAPL 196 Query: 238 ------------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS 285 +G L+ + F+N+ + + T K+ ++ Sbjct: 197 GSFAQDALQEYFTEGRQVLMTKYHEEHDIVFVNHHGKPITPTGIEYVLNQIIKKSSLDSD 256 Query: 286 --AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R AT + GA + G + + Y Sbjct: 257 IHPHMLRHTFATHLLNNGADLRTVQELLGHANLSTTQIYAH 297 >gi|303237489|ref|ZP_07324054.1| putative tyrosine recombinase XerC [Prevotella disiens FB035-09AN] gi|302482309|gb|EFL45339.1| putative tyrosine recombinase XerC [Prevotella disiens FB035-09AN] Length = 292 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 49/275 (17%), Positives = 99/275 (36%), Gaps = 27/275 (9%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYF---DQIIRKSGD-FDYRKITTKHIRSG---VESR 126 I ++ K + + + + + +Q +K D + I T +R + + Sbjct: 3 IEDFLKYLTFERNYSQRTIGEYSEDLHGFEQFYKKLDDELSWENIDTDVVRDWVEYMMDK 62 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 +T +S + L+++R +++A+++ +V +P ++ PKRK + + +M Sbjct: 63 GNTATSVNRRLSALRSFYRYALKRGFVENDPTYKLQGPKRKKPLPQFLKEAEMDTLLVPE 122 Query: 187 SEGSQ-----PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDG 240 G+ R +G+R S+ + + IK T K + Sbjct: 123 MWGNTYKDVLARTIILTFYSTGIRVSELVGLNNKDINIVTHEIKVTGKRNKQRIIPFGKE 182 Query: 241 F-------MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV----NKSAHGV 289 KL +E F+ +++ Q K A A V KS H + Sbjct: 183 LEEQIDTYQKLRNDEIGEQEALFVTAKGERITTAQVRTMVK--ANLAKVSTLKKKSPHVL 240 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 R AT + A + G +++ E YT Sbjct: 241 RHTFATAMLNNKAGLESVKKLLGHESIVTTEVYTH 275 >gi|260559074|ref|ZP_05831260.1| phage integrase [Enterococcus faecium C68] gi|260074831|gb|EEW63147.1| phage integrase [Enterococcus faecium C68] Length = 301 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 47/281 (16%), Positives = 98/281 (34%), Gaps = 34/281 (12%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFE---SYFDQIIRKSGDFDYRKITTKHIRSGVESRK 127 L++LI E + ++ ++E +F + +SGD D K +R + + Sbjct: 11 LRYLIVE-------RGYSEKTKEAYEEDILHFKHFLEESGDADLLKAEYFTVRVYLSALA 63 Query: 128 H-----TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 + +S + + S+R +++ +++E + NP V K+ R + + +MQ Sbjct: 64 DHRSSYSRNSISRKIASLRSFYQYLLKEEVIKENPFSYVHLKKKNLRLPRFFYENEMQAL 123 Query: 183 KSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVEL 237 + R E L SG+R S+ V + ++ + K L Sbjct: 124 FDSVAGDSPLDLRNRALLEVLYGSGIRLSECSSLSVSDIDFDSEVMLIHGKGNKERYAPL 183 Query: 238 ------------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS 285 +G L+ + F+N+ + + T K+ ++ Sbjct: 184 GSFAQDALQEYFREGRQVLMTKYHEEHDIVFVNHHGKPITPTGIEYVLNQMIKKSSLDSD 243 Query: 286 --AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R AT + GA + G + + Y Sbjct: 244 IHPHMLRHTFATHLLNNGADLRTVQELLGHANLSTTQIYAH 284 >gi|193069614|ref|ZP_03050567.1| integrase [Escherichia coli E110019] gi|192957161|gb|EDV87611.1| integrase [Escherichia coli E110019] Length = 256 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 46/251 (18%), Positives = 88/251 (35%), Gaps = 19/251 (7%) Query: 96 ESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH--TPSSAIQFLTSMRVLFKWAVRQEYV 153 S I R D ITTK I + + +SA +++ F+ A+ + ++ Sbjct: 1 MSKIRAIRRGLPDAPLEDITTKKIAAMLNGYIDEGKAASAKLIRSTLSDAFREAIAEGHI 60 Query: 154 AINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAG 213 NP + K + R E ++ +++ S RLA E + +G R D C Sbjct: 61 TTNPVAATRAAKSEVRRSRLTADEYLKIYQAAESSPCWLRLAMELAVVTGQRVGDLCEMK 120 Query: 214 VQHLQNNIFSIKTQKTGTIITVE---------LPDGFMKLLAMTPIGKETFFINNDKQKM 264 + + ++ KTG I + + +G ET + ++ + Sbjct: 121 WSDIVDGYLYVEQSKTGVKIAIPTTLHVDALGISMKETLDKCKKILGGETIIASTRREPL 180 Query: 265 NATQFSIWFKAKATKAGV-----NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319 ++ S +F +G+ + H +R + + + G K+ A Sbjct: 181 SSGTVSRYFMRARKASGLSFEGDPPTFHELR-SLSARLYEKQISDKFAQHLLGHKSDTMA 239 Query: 320 ETYTKGADRIR 330 Y DR R Sbjct: 240 SQY--RDDRGR 248 >gi|228470279|ref|ZP_04055183.1| site-specific recombinase, phage integrase family/ribosomal subunit interface protein [Porphyromonas uenonis 60-3] gi|228308022|gb|EEK16897.1| site-specific recombinase, phage integrase family/ribosomal subunit interface protein [Porphyromonas uenonis 60-3] Length = 403 Score = 114 bits (285), Expect = 3e-23, Method: Composition-based stats. Identities = 40/264 (15%), Positives = 100/264 (37%), Gaps = 24/264 (9%) Query: 85 GSLAVNSRISFESYFD-----QIIRKSGDFDYRKITTKHIRSGVESRKH---TPSSAIQF 136 + + + ++ + + + ++ +R+ + + + ++ + Sbjct: 21 RNASPLTLTTYRPAIESYMESALELATDEWRPSDADRDLVRNWIMQQMDDELSSTTVNKN 80 Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS------ 190 L+++R +K+ + +V NP ++ PKR+ T+ +++ + + Sbjct: 81 LSAVRSFYKYLQLRGHVTSNPTRYLKGPKREHTLPSFLTQAQIEEALATIPIETDNFLSV 140 Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFMK------ 243 + RL E + +GLR ++ Q + S++ G V + Sbjct: 141 RDRLIIETIYQTGLRRAEVASLKTQQVDLTAMSLRVVGKGRKERIVPFGTDLREKMQDYI 200 Query: 244 LLAMTPIG-KETFFINNDKQKMN-ATQFSIWFKAKATKAGVNKS-AHGVRKFSATISADA 300 L +G + FF+ + + ++ A + + KA + G+ + AH +R AT +A Sbjct: 201 TLRDQKVGTSQYFFVTLECRPLSGADVYQVVHKALSVVPGLPRRGAHTLRHSFATEMLNA 260 Query: 301 GATAHELMATYGWKTVDQAETYTK 324 GA + G ++ YT Sbjct: 261 GAPITSIKELLGHSNLETTTRYTH 284 >gi|85373824|ref|YP_457886.1| integrase [Erythrobacter litoralis HTCC2594] gi|123099544|sp|Q2NB52|XERC_ERYLH RecName: Full=Tyrosine recombinase xerC gi|84786907|gb|ABC63089.1| integrase [Erythrobacter litoralis HTCC2594] Length = 306 Score = 113 bits (284), Expect = 3e-23, Method: Composition-based stats. Identities = 47/276 (17%), Positives = 92/276 (33%), Gaps = 18/276 (6%) Query: 72 KWLISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130 I E+ A A N+ ++ + +GD + R G P Sbjct: 5 SAAIEEFLAMLAAERGAAANTLAAYRRDLEGAEALAGDLATAR-RPALSRLGSAWSDLAP 63 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---- 186 ++ + +++R + + V + +P ++ RP + + + +++++ Sbjct: 64 ATVARKASALRQFYGFLVDEGLREDDPSSALPRPTMRRPLPKTLSHKEVERLFEQAEREA 123 Query: 187 ----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL-QNNIFSIKTQKTGTIITVELPDGF 241 + E L SGLR ++ V + ++ F T K G V + Sbjct: 124 ETSRPLPVRLLALIELLYGSGLRATELVSLPVAAVPRDAPFLTVTGKGGVARMVPVSGRA 183 Query: 242 MKLLA---MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSAT 295 + L + + K + + K A +A +N S H +R AT Sbjct: 184 REALQSWMGLRGSDSPYLFPSRKAHITRVRLFQMLKELAVRADLNPDKVSPHVLRHAFAT 243 Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 + GA L G + + YT D RL Sbjct: 244 HLLEGGADLRVLQTLLGHADISTTQIYTH-VDAARL 278 >gi|330994361|ref|ZP_08318288.1| Tyrosine recombinase xerC [Gluconacetobacter sp. SXCC-1] gi|329758556|gb|EGG75073.1| Tyrosine recombinase xerC [Gluconacetobacter sp. SXCC-1] Length = 388 Score = 113 bits (284), Expect = 3e-23, Method: Composition-based stats. Identities = 62/352 (17%), Positives = 113/352 (32%), Gaps = 26/352 (7%) Query: 19 GKIIY--YFRKGHGRRIRLPYPHESTFIPAYMS-------ALTGSTPKREYINSPRKKPT 69 G+ +Y ++R G R H S + A + S +K Sbjct: 37 GRKVYVIHYRSGGRLRRYTIGQHGSPWTADLARDEAIRILARVHTGENPADKRSDDRKAM 96 Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESRKH 128 T+ + L +R + + I+ K G + ++ + S +H Sbjct: 97 TVASFSRRFLDEYVDVHLKPRTRGEYRRSVELFIVPKFGSWRMADLSRAEVVEFHGSFRH 156 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAI--NPCLSVERPKRKTEGIRPWTKEDMQQF---- 182 P A + L + +F A NPC V+R R+ R T ++ + Sbjct: 157 IPYQANRTLGVLSKMFSLADLWGIRQDGVNPCRGVKRY-REERRERFLTWDEYARLGGSL 215 Query: 183 -KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPD 239 ++ R L +G R + H+ + KTG TV+L Sbjct: 216 DEAAEDMPEAARAIRLLAL-TGCRLREIQTLQWAHVWLGEAELRLPDSKTGAK-TVQLGT 273 Query: 240 GFMKLLAMTPI-GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATIS 297 + +L T + I K T ++ AG++ H +R A+ + Sbjct: 274 AAVDVLKATRRLPDNPYVITGRKAGEYLTDLQKPWRRIRKAAGLDGVRLHDLRHSFASDA 333 Query: 298 ADAGATAHELMATYGWKTVDQAETYT--KGADRIRLGIKNSRRISSVVDSDD 347 + GA + G + Y K + R + ++RISS + Sbjct: 334 LEMGADLTMIGRMLGHSDIKTTSRYAHLKRENVKRSTDQVAQRISSALTDSR 385 >gi|257095701|ref|YP_003169342.1| tyrosine recombinase XerC [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257048225|gb|ACV37413.1| tyrosine recombinase XerC [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 304 Score = 113 bits (284), Expect = 3e-23, Method: Composition-based stats. Identities = 39/262 (14%), Positives = 95/262 (36%), Gaps = 22/262 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFD----YRKITTKHIR---SGVESRKHTPSSAIQFL 137 L+ ++ ++ + + G+ + I T HIR + + +R S + L Sbjct: 21 RRLSPHTVSNYRHDLETLCALIGELPSDSGFAAIETHHIRRFVAILHTRGLGGRSLGRTL 80 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS---QPRL 194 ++ R ++W V++ +NP SV PK + + ++ + + SE + + Sbjct: 81 SAWRGFYRWLVQRGMTTLNPVDSVRPPKSPKGLPKALSPDEANRLLAAQSENLLEIRDQA 140 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKT-QKTGTIITVELPDGFMKLLA------ 246 FE SGLR ++ + L++ + ++ K + V + + +A Sbjct: 141 IFELFYSSGLRLAELAALDIGCLEDLLAGEVRVLGKRNKLRIVPVGSQAREAVALWAGQR 200 Query: 247 --MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGA 302 + + F+ +++ + + G+ H +R A+ + Sbjct: 201 ACLAAADETALFVGQRGRRLGVRMIQLRLLRRGRAQGLPARVHPHMLRHSFASHVLQSSG 260 Query: 303 TAHELMATYGWKTVDQAETYTK 324 + G ++ + YT Sbjct: 261 DLRAVQEMLGHASIASTQVYTH 282 >gi|150388279|ref|YP_001318328.1| phage integrase domain/SAM domain-containing protein [Alkaliphilus metalliredigens QYMF] gi|150389751|ref|YP_001319800.1| phage integrase domain/SAM domain-containing protein [Alkaliphilus metalliredigens QYMF] gi|150392024|ref|YP_001322073.1| phage integrase domain/SAM domain-containing protein [Alkaliphilus metalliredigens QYMF] gi|149948141|gb|ABR46669.1| phage integrase domain protein SAM domain protein [Alkaliphilus metalliredigens QYMF] gi|149949613|gb|ABR48141.1| phage integrase domain protein SAM domain protein [Alkaliphilus metalliredigens QYMF] gi|149951886|gb|ABR50414.1| phage integrase domain protein SAM domain protein [Alkaliphilus metalliredigens QYMF] Length = 332 Score = 113 bits (284), Expect = 3e-23, Method: Composition-based stats. Identities = 47/265 (17%), Positives = 90/265 (33%), Gaps = 14/265 (5%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP---S 131 I Y S LA+ + + ++ + +TT IR + S T Sbjct: 57 ILLYLASKKIDGLAMRTLEGYSRNLNRF-AYYMRKNVEDVTTMDIRMYLASYAKTGVKNG 115 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191 + +R F+W +EY+ +P ++ K + + T E+M+ + + Sbjct: 116 TIGTETDILRGFFRWLEDEEYINKSPLRKIKSLKPEKRIRKALTNEEMEILRDGCKTY-R 174 Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGF----MKLLA 246 + EF +G R + + +K K TV + K L Sbjct: 175 QKALLEFFYSTGCRLEEVENVKKYDIDWQRLQLKVIGKGNKERTVYINAKAKVHIQKYLM 234 Query: 247 MTPIGKETFFINNDK--QKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGA 302 +E F+ +K+ F +G+ KS H +R AT ++GA Sbjct: 235 ARLDEEEALFVTERNPVKKLGRRSIEREFDKIEKTSGIKKSIYPHLIRHTMATHLLNSGA 294 Query: 303 TAHELMATYGWKTVDQAETYTKGAD 327 + A G + + Y + ++ Sbjct: 295 DLGTVQAILGHEDASITQIYAQISN 319 >gi|262273209|ref|ZP_06051025.1| tyrosine recombinase XerC [Grimontia hollisae CIP 101886] gi|262222787|gb|EEY74096.1| tyrosine recombinase XerC [Grimontia hollisae CIP 101886] Length = 305 Score = 113 bits (284), Expect = 3e-23, Method: Composition-based stats. Identities = 37/262 (14%), Positives = 83/262 (31%), Gaps = 24/262 (9%) Query: 85 GSLAVNSRISFESYFDQIIR--------KSGDFDYRKITTKHIRSGVESRKHTPSSAIQF 136 L+ ++ ++ + D D + ++ E K S Sbjct: 22 RGLSRHTETNYRQQLAACAEFLVGAGVSQWQDVDAAWVRQIAAQAKREQLKAG--SIALR 79 Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK---SFWSEGSQPR 193 L+++R F + V +A NP V PK+ + +++ Q + + R Sbjct: 80 LSALRSFFDFMVADGVMAANPAKGVSAPKQGRTLPKNLDVDEVNQLLSVDADDPLSVRDR 139 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLL------- 245 E + +GLR S+ V+ + ++ K V + L Sbjct: 140 AMMELMYGAGLRLSELIGLNVRDVAMRKGDLRVIGKGDKERIVPFTGMAKEWLINWLKVR 199 Query: 246 -AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGA 302 + ++ F++ ++++ K V + + H +R AT ++ Sbjct: 200 NQLLKGPEDALFLSKLGKRISPRSVQKRMAEWGQKQAVSSHINPHKLRHSFATHMLESSG 259 Query: 303 TAHELMATYGWKTVDQAETYTK 324 + G + + YT Sbjct: 260 DLRAVQELLGHADLSTTQVYTH 281 >gi|50122323|ref|YP_051490.1| site-specific tyrosine recombinase XerC [Pectobacterium atrosepticum SCRI1043] gi|49612849|emb|CAG76299.1| probable integrase/recombinase [Pectobacterium atrosepticum SCRI1043] Length = 352 Score = 113 bits (284), Expect = 3e-23, Method: Composition-based stats. Identities = 46/309 (14%), Positives = 99/309 (32%), Gaps = 34/309 (11%) Query: 51 LTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI---IRKSG 107 +T TL+ + Y + + + + + G Sbjct: 1 MTKPKAPTPEATYLSSLSQTLRQYTTAYLAHLTATNHSPRTVEGYGERLRPFVTWCEERG 60 Query: 108 DFDYRKITTKHIRSGVESRKHTPSSAI----------QFLTSMRVLFKWAVRQEYVAINP 157 +++ + + H A LTS+R+LF+W + + ++ NP Sbjct: 61 LMQAAQVSLAALEAYQRHL-HGYRKADGKPLAQGGQLNRLTSIRMLFRWLLHRHHILYNP 119 Query: 158 CLSVERPKRKTEGI-RPWTKEDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRA 212 + PK + + ++E+ + G + R E L +GLR S+ Sbjct: 120 AEQLTLPKAEKRLPAQILSEEETEAVMDAQDTDTLTGLRNRAVLEMLWSTGLRRSELAGL 179 Query: 213 GVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAM----------TPIGKETFFINND 260 + + + ++ K V + + + T F+ Sbjct: 180 MLDDVDVGRGVLVVRQGKGNKDRVVPVGLRALVWVQRYLDAVRPRLTTRHDSGYLFVTIW 239 Query: 261 KQKMNATQFSIWF-KAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVD 317 +++ +I +A A + K+ H R AT + GA + A G + ++ Sbjct: 240 GKRLGRATLTILAGRAIRNDAHLKKAGACHVFRHSMATQMLENGADTRHIQAILGHEKLE 299 Query: 318 QAETYTKGA 326 + YT+ A Sbjct: 300 TTQIYTRVA 308 >gi|260909719|ref|ZP_05916413.1| integrase/recombinase XerD [Prevotella sp. oral taxon 472 str. F0295] gi|260636144|gb|EEX54140.1| integrase/recombinase XerD [Prevotella sp. oral taxon 472 str. F0295] Length = 293 Score = 113 bits (284), Expect = 3e-23, Method: Composition-based stats. Identities = 44/275 (16%), Positives = 95/275 (34%), Gaps = 28/275 (10%) Query: 76 SEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFD----YRKITTKHIRSGVESRKHTP 130 ++ + + + + S+ + D + I IR +ES Sbjct: 4 EQFLNYLQYELNRSELTIASYGDDLRAFEAFFKNKDTQLSWEAIDADIIRDWMESMMDKG 63 Query: 131 SSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 SA + L+++R +++ + + YV NP + PKR + + ++ + Sbjct: 64 CSATTIQRRLSALRSFYRFGLTRGYVTKNPARGIVGPKRSRPLPQFLREAEIDRLLDDVP 123 Query: 188 EGS--QPRLAFEFLL---YSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGF 241 G + LA+ +L +G+R ++ + IK K + D Sbjct: 124 AGDSYRELLAYTIVLTFYSTGMRLAELVGLDDDSIDFETRVIKVLGKGSKQRLIPFADEL 183 Query: 242 MKLLAMTPIGKE--------TFFINNDKQKMNATQFSIWFKAKATKAGV----NKSAHGV 289 + L ++ FF++ +++ + A+ A V +S H + Sbjct: 184 EEGLKTYITRRDAEVTRKSKAFFVDRHGERVKRGAVQNSVR--ASLAKVTSMKKRSPHVL 241 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 R AT + A + G +++ E YT Sbjct: 242 RHSFATAMLNNEAGLESVKKLLGHESLSTTEIYTH 276 >gi|227890941|ref|ZP_04008746.1| site-specific recombinase XerD [Lactobacillus salivarius ATCC 11741] gi|227867350|gb|EEJ74771.1| site-specific recombinase XerD [Lactobacillus salivarius ATCC 11741] Length = 298 Score = 113 bits (284), Expect = 3e-23, Method: Composition-based stats. Identities = 39/266 (14%), Positives = 89/266 (33%), Gaps = 27/266 (10%) Query: 85 GSLAVNSRISF----ESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT--PSSAIQFLT 138 + + ++ + + D I G +++I + + + + +S + ++ Sbjct: 17 KQYSDETLKAYSEDLQHFVDFIDETGGAKSFKEIGSNDVHAYMSYLYDRYEMTSISRMIS 76 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRL 194 S+R + + ++ E NP V+ + R + +++M + + R Sbjct: 77 SLRAFYNFLIKNELTDENPFAYVQLKRHPRSLPRFFYEKEMTALFEATEGDTQMLIRDRA 136 Query: 195 AFEFLLYSGLRCSDS--CRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM----- 247 E L +G+R S+ + L N + K V + L Sbjct: 137 LLESLYGTGMRVSECTGLKMESVDLTNKKMLLH-GKGDKDRLVPFGSYCQEALQRYFEQT 195 Query: 248 -TP------IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISA 298 TP + F+N+ + + K ++ ++ S H +R AT Sbjct: 196 RTPLMEKYHRDHDLVFVNHYGNPLTPAGVAYILKQIVKRSSLHTSIHPHELRHTFATHLM 255 Query: 299 DAGATAHELMATYGWKTVDQAETYTK 324 GA + G ++ + YT Sbjct: 256 SNGADLRAVQELLGHSSLSTTQIYTH 281 >gi|91791760|ref|YP_561411.1| tyrosine recombinase XerC [Shewanella denitrificans OS217] gi|91713762|gb|ABE53688.1| Tyrosine recombinase XerC [Shewanella denitrificans OS217] Length = 321 Score = 113 bits (284), Expect = 3e-23, Method: Composition-based stats. Identities = 31/229 (13%), Positives = 74/229 (32%), Gaps = 14/229 (6%) Query: 109 FDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168 + + + + + +P S L++++ F++ + ++ + NP + PK+ Sbjct: 68 LALSHEALQALLAKLHRQGLSPRSLSLCLSALKQFFEYLLAEDCITHNPAKGLSAPKQAK 127 Query: 169 EGIRPWTKEDMQQFKSFW---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK 225 + + + + + R E SGLR + + + +K Sbjct: 128 PLPKNIDVDAISHLLAIDGDDPLVIRDRAIMELFYSSGLRLGELASLNYGDIHLGLQEVK 187 Query: 226 T-QKTGTIITVELPDGFMKLLAMTPIGK--------ETFFINNDKQKMNATQFSIWFKAK 276 K G V + M+ LA+ + F++N ++++ Sbjct: 188 VLGKGGKERRVPVGKLAMEALALWHTQRLLLVQADEPALFVSNQGKRLSHRSIQARMAKW 247 Query: 277 AT--KAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 V H +R AT ++ + G + + YT Sbjct: 248 GQNQALSVPVHPHKLRHSFATHMLESSGDLRAVQELLGHANLSTTQIYT 296 >gi|14010726|ref|NP_114212.1| hypothetical protein pFKN_p22 [Pseudomonas syringae pv. maculicola str. M6] gi|13926143|gb|AAK49554.1|AF359557_19 unknown [Pseudomonas syringae pv. maculicola str. M6] Length = 320 Score = 113 bits (284), Expect = 3e-23, Method: Composition-based stats. Identities = 52/277 (18%), Positives = 102/277 (36%), Gaps = 32/277 (11%) Query: 84 WGSLA-VNSRISFESYFDQIIRKSGDF---DYRKITTKHI---RSGVESRKHTPSSAIQF 136 + +L +R ++++ + G ++R +T H+ R+ +E R ++ + Sbjct: 33 FANLDNPRTRRAYQNDLEDFCSFVGLASADEFRVVTRSHVLAWRAQLEHRGLAGATIRRK 92 Query: 137 LTSMRVLFKWAVRQE-YVAINPCLSVERPKRKT-EGIRPWTKED-----MQQFKSFWSEG 189 L ++ LF + NP V+RP+ ++ EG P + ++ +G Sbjct: 93 LAALASLFDHLLENNAIAGGNPVHGVKRPRIESNEGKTPALGDHQAKALLEAPDETTLKG 152 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKT-QKTGTIITVELPDG------ 240 + R LLY GLR ++ V + + I +K K G + + L Sbjct: 153 QRDRALLAVLLYHGLRREEAALLQVSDIQERRGIQHLKVHGKGGKVRYLPLHPIAAGRIH 212 Query: 241 --FMKLLAMTPIGKETFFINNDKQ----KMNATQFSIWFKAKATKAGV---NKSAHGVRK 291 K F+ + + A A A KAG+ HG+R Sbjct: 213 QYLENSEHHLAERKVPLFMPLRGKLTGAGITANGIYAVVTAYAKKAGIEVDGLGVHGLRA 272 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 +AT + + A ++ A G + + Y + +R Sbjct: 273 TAATNALEHEADIAKVQAWLGHANISTTKIYDRRENR 309 >gi|21232926|ref|NP_638843.1| site-specific tyrosine recombinase XerC [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66767001|ref|YP_241763.1| site-specific tyrosine recombinase XerC [Xanthomonas campestris pv. campestris str. 8004] gi|188990094|ref|YP_001902104.1| site-specific tyrosine recombinase XerC [Xanthomonas campestris pv. campestris str. B100] gi|34222915|sp|Q8P550|XERC_XANCP RecName: Full=Tyrosine recombinase xerC gi|81307012|sp|Q4UYY0|XERC_XANC8 RecName: Full=Tyrosine recombinase xerC gi|254799362|sp|B0RNK3|XERC_XANCB RecName: Full=Tyrosine recombinase xerC gi|21114762|gb|AAM42767.1| site-specific recombinase [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66572333|gb|AAY47743.1| site-specific recombinase [Xanthomonas campestris pv. campestris str. 8004] gi|167731854|emb|CAP50038.1| site-specific tyrosine recombinase [Xanthomonas campestris pv. campestris] Length = 322 Score = 113 bits (284), Expect = 3e-23, Method: Composition-based stats. Identities = 40/257 (15%), Positives = 86/257 (33%), Gaps = 17/257 (6%) Query: 85 GSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIRSGV---ESRKHTPSSAIQFLT 138 ++ ++ ++ +I G D ++ + +R V R +P S + L+ Sbjct: 42 RQVSAHTLDAYRRDLAALIGWASAQGSEDVAQLDSAQLRKFVTAEHRRGLSPKSLQRRLS 101 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---WSEGSQPRLA 195 + R + W ++ +A +P ++ PK + + ++ + G + R Sbjct: 102 ACRSYYAWLLKHGRIATSPAAALRAPKAPRKLPQVLDADEAVRLVEVPTDAPLGLRDRAL 161 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGKE- 253 E SGLR S+ C + L + + K G V + + L Sbjct: 162 LELFYSSGLRLSELCALRWRDLDLDSGLVTVLGKGGKQRLVPVGSHAVAALRAWQRDSGG 221 Query: 254 ----TFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHEL 307 F ++ I K A + G+ + H +R A+ ++ + Sbjct: 222 SAQTHVFPGRAGGAISQRAVQIRIKQLAVRQGMFKHVHPHMLRHSFASHILESSGDLRGV 281 Query: 308 MATYGWKTVDQAETYTK 324 G + + YT Sbjct: 282 QELLGHSDIATTQIYTH 298 >gi|227549015|ref|ZP_03979064.1| site-specific tyrosine recombinase XerC [Corynebacterium lipophiloflavum DSM 44291] gi|227078925|gb|EEI16888.1| site-specific tyrosine recombinase XerC [Corynebacterium lipophiloflavum DSM 44291] Length = 298 Score = 113 bits (284), Expect = 3e-23, Method: Composition-based stats. Identities = 42/282 (14%), Positives = 101/282 (35%), Gaps = 24/282 (8%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE---SR 126 L I ++ + A + + ++ S ++ + + ++T +R+ + SR Sbjct: 9 LGEAIEDFAEHAELVLGRSPATVKAYRSDLATLLPFA--TTFAELTLPTLRAWLADAVSR 66 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE------DMQ 180 S+ + +++R WA Q Y+ +P + PK E + + Sbjct: 67 GLARSTLARRTSAVRAFSTWACNQGYLQSDPAARLLSPKVNRHLPTVVEAEAAGELVEAE 126 Query: 181 QFKSFWSEGS-QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---- 235 + + R E L +G+R ++ + + ++K G + Sbjct: 127 INDDDHPAETLRDRAMLELLYATGMRVAELSALDIGDVDLGRGAVKVTGKGDKQRIVPFG 186 Query: 236 -ELPDGFMKLLAM----TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGV 289 D + ++ + F+ + ++++ Q + A + G + S H + Sbjct: 187 GAASDAVQRWVSAGRGELAGDTDALFVGSRGKRIDQRQVRRIVERAAVRTGAGEISPHSL 246 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIR 330 R +AT + GA + G ++ + YT A R++ Sbjct: 247 RHSAATHMIEGGADLRVVQEMLGHSSLQTTQIYTHVSAQRLK 288 >gi|212635507|ref|YP_002312032.1| Phage integrase:Phage integrase,SAM-like protein [Shewanella piezotolerans WP3] gi|212556991|gb|ACJ29445.1| Phage integrase:Phage integrase,SAM-like protein [Shewanella piezotolerans WP3] Length = 317 Score = 113 bits (284), Expect = 3e-23, Method: Composition-based stats. Identities = 53/319 (16%), Positives = 101/319 (31%), Gaps = 38/319 (11%) Query: 35 LPYPHESTFIP--AYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSR 92 + P F P Y L K + ++ R K LK I W + Sbjct: 1 MDKPTTKHFWPCVEYYLEL--CLAKGQSSDTVRNKRGGLKKFII-------WC------Q 45 Query: 93 ISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEY 152 S D I D + + R +++ P+ LT ++ K+ R+ Sbjct: 46 ERNISTIDHINLDLMDDYAAYLNS--YRKKLDNEPLGPAQKRNLLTYVKTFVKYMHRKGL 103 Query: 153 VAINPCLSVERPKRKTEGIRPW-TKEDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCS 207 ++ N +E P + + + + E+++ G + R E +G+R Sbjct: 104 LSKNTLSDIELPSKGHQIPKALYSVEEIEVILEQPLLFGIKGLRDRATLEIFFATGIRRG 163 Query: 208 DSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLLA----------MTPIGKETFF 256 + + V + K V + + LA + F Sbjct: 164 ELVKLNVDDIDFTGKMVCVHGKGKKERLVPISQRGCEWLAFYTGKIRPRFAFISSGKALF 223 Query: 257 INNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWK 314 + N+ ++ + S AG +++ H R +AT D GA + G Sbjct: 224 LANNGKRYVPGKLSDMASQYVKLAGFDRTGACHLFRHNTATTMLDNGADLRHIQEMLGHA 283 Query: 315 TVDQAETYTKGADRIRLGI 333 ++ + YT R +L Sbjct: 284 SILTTQLYTH-VSRKKLSE 301 >gi|189183843|ref|YP_001937628.1| putative integrase [Orientia tsutsugamushi str. Ikeda] gi|189180614|dbj|BAG40394.1| putative integrase [Orientia tsutsugamushi str. Ikeda] Length = 213 Score = 113 bits (284), Expect = 3e-23, Method: Composition-based stats. Identities = 42/190 (22%), Positives = 77/190 (40%), Gaps = 10/190 (5%) Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP--RLAFEFLL 200 +F A++ E + NP L +++ K + R + ++M +F + R L Sbjct: 1 MFNKAIKWELMDRNPTLRIDKHKMQARERR-LSYDEMTKFLQVLCREASVLIRDFALLAL 59 Query: 201 YSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMTP-IGKETFFI 257 Y+G R + ++ I+ I K G + L D +++L K + + Sbjct: 60 YTGARKRNVLEMEWDNIDFVRKIWHIPKTKNGKAQNIPLTDEIIEILQARKLTSKSKWVL 119 Query: 258 NNDKQKMN--ATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWK 314 + D+ K + W+K KAG+ N H +R+ A+ AD GA + + A Sbjct: 120 STDRSKSVHLENPYRGWYK-ICKKAGIKNLRIHDLRRTFASCMADEGAGQYIISAALNHS 178 Query: 315 TVDQAETYTK 324 + YTK Sbjct: 179 DIKSTSIYTK 188 >gi|150389215|ref|YP_001319264.1| phage integrase family protein [Alkaliphilus metalliredigens QYMF] gi|149949077|gb|ABR47605.1| phage integrase family protein [Alkaliphilus metalliredigens QYMF] Length = 354 Score = 113 bits (284), Expect = 3e-23, Method: Composition-based stats. Identities = 34/262 (12%), Positives = 94/262 (35%), Gaps = 18/262 (6%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES----RKHTP 130 + + K + ++ S+ + + + + +T + + + ++++ Sbjct: 81 LQQLEKQFTLKGYSPKTKKSYIGHVKRFLGFINNKP-EVLTKQDVEKYMYHLLNVQENSH 139 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 + A Q L++++ ++ +++++ V + + RPK++ ++ ++ + Sbjct: 140 AFANQALSAIKFYYQHSLKKDKVLYD----LPRPKKEKTLPNILSQREVLSILDSVN-NI 194 Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTIITVELPDGFMKLLAMT 248 + + +GLR + R V + ++ ++ K L + + L Sbjct: 195 KHKSILLLTYSAGLRIGEVVRLKVGDIDSDRMLIHVRQGKGRKDRYTILSEVALSTLRKY 254 Query: 249 P-IGKETFFINNDKQK---MNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302 I K ++ ++ + F +A V K S H +R AT + G Sbjct: 255 AMIEKPKDWLFPGGKENCFLTERSVQKIFSVACKRAKVKKHASVHSLRHSFATHLLEGGT 314 Query: 303 TAHELMATYGWKTVDQAETYTK 324 + G + E YT Sbjct: 315 DLRYIQELLGHSSSKTTEIYTH 336 >gi|222095006|ref|YP_002529066.1| DNA integration/recombination/invertion protein [Bacillus cereus Q1] gi|221239064|gb|ACM11774.1| DNA integration/recombination/invertion protein [Bacillus cereus Q1] Length = 370 Score = 113 bits (284), Expect = 3e-23, Method: Composition-based stats. Identities = 50/286 (17%), Positives = 96/286 (33%), Gaps = 39/286 (13%) Query: 77 EYRKS---AHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH---T 129 EY +S S+ + + + Y +II G+ K+T+ H+++ V S + Sbjct: 69 EYLESWFNTKRHSVGIQTAKVLKGYLTSRIIPSLGNIKLAKLTSLHMQNYVNSLRDEGLK 128 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 + + + +R + A+ E + N + + PK E + WT+E++Q F + Sbjct: 129 RGTIEKIIKIIRNSLEHAIDLELITKNVAVKTKLPKGDKEELTVWTEEEVQLFLKAAQD- 187 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--------------TQKTGTIITV 235 S+ + F L +G+R + + + + KT + + Sbjct: 188 SRYSIVFHMALVTGMRQGELLGLRWKDVDLEKGHLTISQTLSHDGKTFLLGGKTKSSLRK 247 Query: 236 ELPDG-----FMKLLAMTPIGK----------ETFFINNDKQKMNATQFSIWFKAKATKA 280 L K A+ K + +N A KA Sbjct: 248 ILLPASTIAKLKKHRAVVLKEKLSQGEEYQDNDLVMCTPSGTPINPANVRRSLNALIQKA 307 Query: 281 GVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324 V K H +R AT+ G + G + +TY+ Sbjct: 308 AVPKIRFHDLRHTHATMLLAKGVNVKVIFERLGHSNIKITLDTYSH 353 >gi|148977143|ref|ZP_01813783.1| site-specific recombinase, phage integrase family protein [Vibrionales bacterium SWAT-3] gi|145963612|gb|EDK28874.1| site-specific recombinase, phage integrase family protein [Vibrionales bacterium SWAT-3] Length = 375 Score = 113 bits (284), Expect = 3e-23, Method: Composition-based stats. Identities = 65/319 (20%), Positives = 112/319 (35%), Gaps = 18/319 (5%) Query: 19 GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP---TTLKWLI 75 G+ +++ R H R S + A + + + SP+ + TL+ Sbjct: 39 GRRVFFVRFQHNGLRRNHK-LGSALDYSLRQARREALQVVQQVRSPKMETLPSITLQAFG 97 Query: 76 SEYRKSAHWGS-LAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133 E+ K + N+ ES F QI GD + + I + H SA Sbjct: 98 QEFFK--RYPRHWKPNTLKKNESAFRLQIAPYLGDREVQSIVRSDVEQWFTQLSHVKGSA 155 Query: 134 IQFLTSMRVLFKWAVRQEYVA--INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS--EG 189 Q L + V+ + EY NPC +R K E R +K++++Q EG Sbjct: 156 NQALVLLSVMMQQCEAWEYRPKNTNPCRGFKRYK-AGEVERYLSKDELRQLWRVLDTLEG 214 Query: 190 SQPR--LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM 247 P + L+Y+G R S+ + + + + KTG TV L L Sbjct: 215 DNPAKVMIIRLLIYTGCRSSEVRTLQWKEYRGGHWHLLDSKTGAK-TVYLCSQVRAYLDA 273 Query: 248 TPIGKETFFIN-NDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAH 305 F + + ++ Q I+++ AG+ H +R A+I+ + Sbjct: 274 WQSESHYLFPAPCNTKPISTNQLGIFWRQARQLAGLEGVRLHDLRHTYASIAIQSKVNLI 333 Query: 306 ELMATYGWKTVDQAETYTK 324 L G + Y Sbjct: 334 VLSRLLGHAEAETTLKYAH 352 >gi|331266258|ref|YP_004325888.1| integrase/recombinase, phage integrase family protein [Streptococcus oralis Uo5] gi|326682930|emb|CBZ00547.1| integrase/recombinase, phage integrase family protein [Streptococcus oralis Uo5] Length = 321 Score = 113 bits (284), Expect = 3e-23, Method: Composition-based stats. Identities = 39/294 (13%), Positives = 96/294 (32%), Gaps = 14/294 (4%) Query: 42 TFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ 101 F+ + +R ++ +K+ + L+ + + + + ++ + Sbjct: 14 PFLNNEQLLALRESLERHLVDGKKKQKHSNNNLLQLFITAKQVEGCSAKTIRYYQRTIEN 73 Query: 102 IIRKSGDFDYRKITTKHIRSGVESRKH----TPSSAIQFLTSMRVLFKWAVRQEYVAINP 157 + ++TT +RS + + + + ++ + F W ++EY+ NP Sbjct: 74 LFHHI-KESVTQLTTDDLRSYLANYQSEKDCSKANLDNIRRILSSFFAWLEQEEYIIKNP 132 Query: 158 CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL 217 +++ K + +T E ++ + E + + L +G+R + + + Sbjct: 133 IRRIKKIKTEQTVKETYTDEHLEIMRDNC-ENLRDLAMIDLLASTGMRVGELVQLNRSDI 191 Query: 218 Q-NNIFSIKTQKTGTIITVELPDG----FMKLLAMTPIGKETFFINNDKQ--KMNATQFS 270 N + K V L F+ + ++ Sbjct: 192 DFENRECVVFGKGKKERPVYFDARTKIHLRNYLNDRKDSHPALFVTLLGKAQRLGIAGVE 251 Query: 271 IWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 I + K G+ K H R+ AT + D G ++ G +D Y Sbjct: 252 IRLRKLGQKLGIQKVHPHKFRRTLATKAIDKGMPIEQVQKLLGHSKIDTTLAYA 305 >gi|293570278|ref|ZP_06681347.1| tyrosine recombinase XerC [Enterococcus faecium E980] gi|291609685|gb|EFF38946.1| tyrosine recombinase XerC [Enterococcus faecium E980] Length = 301 Score = 113 bits (284), Expect = 3e-23, Method: Composition-based stats. Identities = 47/283 (16%), Positives = 100/283 (35%), Gaps = 38/283 (13%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFE---SYFDQIIRKSGDFDYRKITTKHIRSGVESRK 127 L++LI E + ++ ++E +F + +SGD D K +R + + Sbjct: 11 LRYLIVE-------RGYSEKTKEAYEEDILHFKHFLEESGDADLLKAEYFTVRVYLSALA 63 Query: 128 H-----TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 + +S + + S+R +++ +++E + NP V K+ R + + +MQ Sbjct: 64 DHRPSYSRNSISRKIASLRSFYQYLLKEEVIKENPFSYVHLKKKNLRLPRFFYENEMQAL 123 Query: 183 KSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVEL 237 + R E L SG+R S+ V + ++ + K L Sbjct: 124 FDSVAGDSPLDLRNRALLEVLYGSGIRLSECSNLLVSDIDFDSEVMLIHGKGNKERYAPL 183 Query: 238 ------------PDGFMKLLAMTPIGKETFFINNDKQKMNATQ----FSIWFKAKATKAG 281 +G L+ + F+N+ + + T + K + + Sbjct: 184 GSFAQDALQEYFTEGRQVLMTKYHEEHDIVFVNHHGKPITPTGIEYVLNQMIKKSSLDSD 243 Query: 282 VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 ++ H +R AT + GA + G + + Y Sbjct: 244 IH--PHMLRHTFATHLLNNGADLRTVQELLGHANLSTTQIYAH 284 >gi|254282053|ref|ZP_04957021.1| tyrosine recombinase XerC [gamma proteobacterium NOR51-B] gi|219678256|gb|EED34605.1| tyrosine recombinase XerC [gamma proteobacterium NOR51-B] Length = 304 Score = 113 bits (284), Expect = 3e-23, Method: Composition-based stats. Identities = 49/278 (17%), Positives = 98/278 (35%), Gaps = 23/278 (8%) Query: 70 TLKWLISEYRKS-AHWGSLAVNSRISFES---YFDQIIRKSGDFDYRKITTKHIRSG--- 122 +L IS++ ++ ++ ++ +F++ R S R I +RS Sbjct: 4 SLGASISDFLDYQRDVRRMSHHTVSNYRRDLNHFEEFCRASNCTSPRDIKESVVRSWAGQ 63 Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 ++ + P++ + L+S+R FK + NP + + P+R + + + + Sbjct: 64 MQRQGKAPATIQRGLSSVRSYFKHLAARHADISNPAIGIRAPRRPRKLPKTIEADRIGAL 123 Query: 183 KSFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-----TIIT 234 +E + + + E L SGLR ++ ++ L I G + Sbjct: 124 FQRPAESTLEKRDQAIAELLYSSGLRLAELVDVNLEDLDRREGVITVTGKGDKTRTVPVG 183 Query: 235 VELPDGFMKLLAMTPIGKETF------FINNDKQKMNATQFSIWFKAKATK--AGVNKSA 286 V +A PIG+E F+N ++ K A G N Sbjct: 184 VAALKALEAWIACRPIGQEVLSAKAPLFVNQRGTRLGQRSVQDRLKKLAKATHLGQNLHP 243 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R AT ++ + G + + YT Sbjct: 244 HMLRHSFATHLLESSGDLRAVQELLGHANISTTQIYTH 281 >gi|306780830|ref|ZP_07419167.1| integrase [Mycobacterium tuberculosis SUMu002] gi|306790052|ref|ZP_07428374.1| integrase [Mycobacterium tuberculosis SUMu004] gi|306794135|ref|ZP_07432437.1| integrase [Mycobacterium tuberculosis SUMu005] gi|308326334|gb|EFP15185.1| integrase [Mycobacterium tuberculosis SUMu002] gi|308333494|gb|EFP22345.1| integrase [Mycobacterium tuberculosis SUMu004] gi|308337528|gb|EFP26379.1| integrase [Mycobacterium tuberculosis SUMu005] Length = 332 Score = 113 bits (284), Expect = 3e-23, Method: Composition-based stats. Identities = 47/285 (16%), Positives = 95/285 (33%), Gaps = 10/285 (3%) Query: 44 IPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII 103 + A+++A S K P + + I +Y + + + ++ Sbjct: 46 VEAFLAA-AKSQNKPPGPPPSLHAPPSWRRDIDDYLLNLNAAGQRPATIRLRKTVLCAAA 104 Query: 104 RKSGDFDYRKITTKHIRSGVESRKH-TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE 162 G +T +H+ + ++H +P + +++R F WA + V S+ Sbjct: 105 HGLG-RPPADVTAEHLLDWLGKQQHLSPEGRKTYRSTLRGFFVWAYEMDRVRDYVADSLP 163 Query: 163 RPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222 + + + RP + Q + + L +GLR +++ +A L + Sbjct: 164 KVRCPKQPPRPAGDDVWQAALAKADR--RIELMIRLAGEAGLRRAEAAQAHTGDLMDGGL 221 Query: 223 SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282 + K G V + D L+ TP G F N + A Sbjct: 222 LLVHGKDGKRRIVPISDYLAALIRDTPHG--YLFPNGTGGHLTAEHVGKLVSRALPG--- 276 Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 + + H +R AT + + G ++ E YT D Sbjct: 277 DATMHTLRHRYATRAYRGSHNLRAVQQLLGHASIVTTERYTALCD 321 >gi|302387673|ref|YP_003823495.1| integrase family protein [Clostridium saccharolyticum WM1] gi|302198301|gb|ADL05872.1| integrase family protein [Clostridium saccharolyticum WM1] Length = 339 Score = 113 bits (284), Expect = 3e-23, Method: Composition-based stats. Identities = 43/268 (16%), Positives = 87/268 (32%), Gaps = 21/268 (7%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRS-GVESRKHTPS 131 + + S + N+ + + +++ G D + ++ E + Sbjct: 57 VKMFVASKKAVNRQENTLKQYTTEICKMLDFLGKRIEDITAMDLRYYYGVMREQHGIKMT 116 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191 + L + + + +E V NP V K +P+++E+M+ + + + Sbjct: 117 TMQTRLHYLSSFWDFLTTEELVTSNPVKRVGILKLAKTIKKPFSQEEMEALRVNCTV-LR 175 Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPI 250 R EFL +G+R S+ V ++ + K V L D L Sbjct: 176 DRALMEFLYSTGVRVSELALLNVCDIEMGRQELIVFGKGSKERKVYLTDNARFYLKRYLK 235 Query: 251 GKE-------------TFFINNDKQK--MNATQFSIWFKAKATKAGVNK-SAHGVRKFSA 294 + F D+ + F+ +AGV K H R+ A Sbjct: 236 ERMKEEGITEEELENKPLFATLDQPHARLTVAGIQYMFRQLGRRAGVKKVHPHRFRRTIA 295 Query: 295 TISADAGATAHELMATYGWKTVDQAETY 322 T + G ++ G + +D Y Sbjct: 296 TDLLNRGMPVEQVSKLLGHEKLDTTMIY 323 >gi|269213747|ref|ZP_05982773.2| tyrosine recombinase XerC [Neisseria cinerea ATCC 14685] gi|269145670|gb|EEZ72088.1| tyrosine recombinase XerC [Neisseria cinerea ATCC 14685] Length = 329 Score = 113 bits (284), Expect = 3e-23, Method: Composition-based stats. Identities = 38/274 (13%), Positives = 89/274 (32%), Gaps = 20/274 (7%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKI---TTKHIRSGVES-- 125 L + Y ++ + ++ ++ +++ + T + Sbjct: 34 LAAYLDAYLENIVREGKSEHTVAAYRRDLQELLALLEEMPSANPPNCTRGDFVQALRRLS 93 Query: 126 -RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 R + + L+S R W V++ + +P ++ PK+ + +E + Q Sbjct: 94 GRGLGERTLARKLSSWRQYCVWLVKRGLMHADPTADIKPPKQPERIPKALPQECLNQMLD 153 Query: 185 F-----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELP 238 + + FE + SGLR S+ + + ++ G V L Sbjct: 154 LPVDDGDALALRDHALFELMYGSGLRLSEIHGLDTGDVWLDEGWVRVTGKGRKQRQVPLT 213 Query: 239 ----DGFMKLL--AMTPIGKETFFINNDKQKMNATQFSIWFKAKATK--AGVNKSAHGVR 290 + L T + F + +++ Q ++ A + G + S H +R Sbjct: 214 GKSVEALKNYLPLRQTASDGKALFTGRNGTRLSQRQIQKRLESWAAQNGDGRHISPHMMR 273 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK 324 A+ + + G ++ + YTK Sbjct: 274 HSYASHLLQSSRDIRAVQELLGHSSLSTTQIYTK 307 >gi|229815416|ref|ZP_04445748.1| hypothetical protein COLINT_02464 [Collinsella intestinalis DSM 13280] gi|229808949|gb|EEP44719.1| hypothetical protein COLINT_02464 [Collinsella intestinalis DSM 13280] Length = 308 Score = 113 bits (284), Expect = 3e-23, Method: Composition-based stats. Identities = 41/278 (14%), Positives = 86/278 (30%), Gaps = 30/278 (10%) Query: 86 SLAVNSRISFESYFDQIIR-----KSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSM 140 L+ + ++ + + D + + ++ L+++ Sbjct: 26 GLSPETVRAYGQHLEAYADWCESHAVDGLDPSSRDLRSYLAEFRRDGRASTTVAAHLSAL 85 Query: 141 RVLFKWAVRQEY-VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195 R F+W + P +V PK++ E T E++ G + Sbjct: 86 RSFFRWLEYSGHRAGAVPLATV-APKQRRELPHVLTAEELAALFDAPDLSCPVGLRDAAM 144 Query: 196 FEFLLYSGLRCSDSCRAGVQHL-QNNIFSIKTQKTGTIITVEL---------------PD 239 E + +G R S+ R + + K V L Sbjct: 145 LELFIATGARISELSRLELGDVCVAERQVCLLGKGSKERIVPLYARAIEVYERYLENGRP 204 Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATIS 297 ++ A+ F+++ + MN+ F KAG+ + + H +R AT Sbjct: 205 NLLRAPALGGDACRAVFVSDRGRAMNSDALRYRFDVLKRKAGISSDITPHAMRHTFATEL 264 Query: 298 ADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIK 334 GA + G ++ + YT DR++ + Sbjct: 265 LGGGADLRSVQELLGHASLSTTQIYTHLTPDRLKSAVA 302 >gi|153932007|ref|YP_001385123.1| phage integrase family site specific recombinase [Clostridium botulinum A str. ATCC 19397] gi|153935500|ref|YP_001388592.1| phage integrase family site specific recombinase [Clostridium botulinum A str. Hall] gi|152928051|gb|ABS33551.1| site-specific recombinase, phage integrase family [Clostridium botulinum A str. ATCC 19397] gi|152931414|gb|ABS36913.1| site-specific recombinase, phage integrase family [Clostridium botulinum A str. Hall] Length = 379 Score = 113 bits (284), Expect = 3e-23, Method: Composition-based stats. Identities = 46/373 (12%), Positives = 123/373 (32%), Gaps = 47/373 (12%) Query: 15 RTRHGKIIYYFRKG--HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72 R R YYF G G+R ++ ST A + + + ++ Sbjct: 6 RKRGSSWYYYFDAGTVEGKRKKIERKGGSTKKEAETALRNALNEFENCGSLLDESNISIS 65 Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131 + K + N++++++ + I G + + +T ++ + +K+ Sbjct: 66 DYFDYWHKEYALINCKYNTQVNYKKIIENHIKPNLGVYKLKSLTPAILQEFLN-KKYRNG 124 Query: 132 SAIQFLTSMRVLFKWAVRQ-----EYVAINPCLSVERPK-----RKTEGIRPWTKEDMQQ 181 A L++ + A++ + + NP V PK + ++ + E+ ++ Sbjct: 125 FAKNTLSNFYGVLSGALKMAVYPYKLIKENPMTYVTMPKYNQINNDKDDLKILSLENFKE 184 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ----------------NNIFSIK 225 + + EGS + + +G+R ++ C + Sbjct: 185 IINRFPEGSNFYIPLQIAFNTGMRAAEVCGLTWDCINLKNNTITIKKIIIYKNKEWIFGT 244 Query: 226 TQKTGTIITVELPDGFMKLLAMTP--------------IGKETFFINNDKQKMNATQFSI 271 + + T+ + + + +L + + + Sbjct: 245 PKTKSSYRTIPIGNTLVNILKHHKKHQIKNKLKYGKHYTSSNFVCTKENGELVTTNSLKY 304 Query: 272 WFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIR 330 + + + + H +R AT+ +AGA ++ G + +TY+ + ++ Sbjct: 305 LSRVVNYELQIPFNFHSLRHTHATMLLEAGANIKDIQQRLGHSKISTTMDTYSHVTNTLK 364 Query: 331 LGIKNSRRISSVV 343 L + R +++ Sbjct: 365 L--DSVNRFETII 375 >gi|251772576|gb|EES53141.1| putative phage integrase [Leptospirillum ferrodiazotrophum] Length = 367 Score = 113 bits (284), Expect = 3e-23, Method: Composition-based stats. Identities = 51/326 (15%), Positives = 108/326 (33%), Gaps = 20/326 (6%) Query: 12 TKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71 +E + + + G+RIR ++ Y T + R ++ T+ Sbjct: 11 IREIPPGSGVWWVDLRHEGKRIRRKVGPKTAAKAVYERLKTEAREGRLVPREKKRIFPTV 70 Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS----GVESRK 127 + +++E + ++ + Y I K G+ +T +R +SR Sbjct: 71 REVVTE-----RASRFSGRQGVNEKRYASWWIEKIGEKRTNDLTPSDLRKILNEARDSRD 125 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 +P + F +R A+R + +P +R T+ + + + + Sbjct: 126 LSPQTINHFFGHLRAALNEALRDGKIDHSPMQGFSLLPTPRGRLRFLTEGEELRLREVMT 185 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLL 245 + F L +GLR + + N + +I K G V L D +++L Sbjct: 186 PADFRLVRFAIL--TGLRREEQFSLTWSDIDLQNRVLTIPRSKHGGTRHVPLSDEAVEIL 243 Query: 246 AMTPIGKETF--FINNDKQKMNATQFSIWFKA----KATKAGV-NKSAHGVRKFSATISA 298 + + + +++ KAG+ + H +R A+ Sbjct: 244 KAIRTERRVVSAWCFPSQNPATHIDPQNFYRRVYLPALEKAGIKDVIWHTLRHTCASRLV 303 Query: 299 DAGATAHELMATYGWKTVDQAETYTK 324 AG + G KT+ Y+ Sbjct: 304 MAGVDIRTVQEILGHKTLAMTTRYSH 329 >gi|269978219|ref|ZP_06185169.1| tyrosine recombinase XerD [Mobiluncus mulieris 28-1] gi|269933728|gb|EEZ90312.1| tyrosine recombinase XerD [Mobiluncus mulieris 28-1] Length = 319 Score = 113 bits (284), Expect = 3e-23, Method: Composition-based stats. Identities = 45/284 (15%), Positives = 92/284 (32%), Gaps = 32/284 (11%) Query: 85 GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKHTPSS--------A 133 + ++ +++ + + G ++T + V + +S Sbjct: 28 RGASPHTIAAYQRDLQRYVAYLQILGRDTLAQVTEVDLEGFVRALGDGFASFPPLGSTSV 87 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG---- 189 + L + R ++ + N SV+ K E+M+ + S Sbjct: 88 RRCLAAARSWHRYLFDSGSLGANVASSVKPAKLPRRLPETLNLEEMEALLAAASSPGDSN 147 Query: 190 -SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELP-----DGF 241 + R EFL SG R S++ + + ++ G + + Sbjct: 148 SLRDRALLEFLYASGARISEAMNLVLDDIDFETEPALVRLFGKGRKERISMLGRQACQAL 207 Query: 242 MKLL-AMTPIGKE------TFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKF 292 L + P E F+N + M+ +A A +A +++ H +R Sbjct: 208 QAYLVRVRPTLAEKGQSIGRVFLNTYGKPMSRQTAWAIIQAAAKRAQIDRPVHPHTLRHC 267 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336 AT GA + G +V E YTK + ++ L + S Sbjct: 268 FATHLLQGGADIRVVQELLGHASVTTTEIYTKVSKQMLLEVYAS 311 >gi|167465690|ref|ZP_02330779.1| phage integrase family protein [Paenibacillus larvae subsp. larvae BRL-230010] Length = 301 Score = 113 bits (284), Expect = 3e-23, Method: Composition-based stats. Identities = 42/261 (16%), Positives = 86/261 (32%), Gaps = 22/261 (8%) Query: 86 SLAVNSRISFESYFDQIIRKSGDFDYRKIT-------------TKHIRSGVESRKHTPSS 132 L + + S I +Y++ T++ + + + P++ Sbjct: 27 DLNPKTLKEYASDLKHFIGWFETANYQEENIVFRIEDVATPTLTRYQEASQKVMELKPAT 86 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG--S 190 + L +++ F+WA + +P V+ + R T ++ + G Sbjct: 87 INRRLITLKRFFEWAASNSIIRRDPSKPVKLVPEEKVSPRQMTDKEEDALIAAAEHGGSL 146 Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP----DGFMKLLA 246 + + +L++GLR + C +Q ++++ K V L K L Sbjct: 147 RDQTILIVMLHTGLRTMEVCDLAPGDIQIGKLTVRSGKRNKQREVPLNATCRSALEKYLV 206 Query: 247 MTPIGKETFFIN-NDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATA 304 P G F + +++ + KA + SAH +R + A Sbjct: 207 YLPPGSPYLFPSEKTGDRLSERALRHLIQKYMKKARLKGLSAHDLRHRFGYVMAVN-TPL 265 Query: 305 HELMATYGWKTVDQAETYTKG 325 H L G + D Y K Sbjct: 266 HRLAQIMGHDSPDTMMIYVKA 286 >gi|300858733|ref|YP_003783716.1| tyrosine recombinase [Corynebacterium pseudotuberculosis FRC41] gi|300686187|gb|ADK29109.1| tyrosine recombinase [Corynebacterium pseudotuberculosis FRC41] gi|302206440|gb|ADL10782.1| Tyrosine recombinase XerC [Corynebacterium pseudotuberculosis C231] gi|302330996|gb|ADL21190.1| Tyrosine recombinase XerC [Corynebacterium pseudotuberculosis 1002] gi|308276682|gb|ADO26581.1| Tyrosine recombinase XerC [Corynebacterium pseudotuberculosis I19] Length = 293 Score = 113 bits (284), Expect = 3e-23, Method: Composition-based stats. Identities = 41/277 (14%), Positives = 90/277 (32%), Gaps = 19/277 (6%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQII-RKSGDFDYRKITTKHIRSGVESRKHT 129 LI ++ + + + + S + RK D+ + + T Sbjct: 5 SALIDDFIEHLELVSGRSPATLKGYRSDLNTFAMRKPELKDFTLDNLRDWLGEAVAEGKT 64 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---- 185 ++ + + + R + W ++Q Y+ + + PK + + Sbjct: 65 RATLARRVAAARSMSSWLLKQGYIETDMAARLVAPKVGRHLPKVLAAGQAESVVEHPASK 124 Query: 186 -WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMK 243 +E ++ R E L +G+R S+ C ++ + ++K K V Sbjct: 125 TEAEFARDRAVLELLYATGIRVSELCGINLEDIDWRRKTLKVLGKGDKQRVVPFGQAACD 184 Query: 244 LL----------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKF 292 L + F+ +++ Q A +AG+ H VR Sbjct: 185 ALTHWIETGRPAMCKDQSEAALFLGVRGGRLDPRQVRRLVDAAGKEAGISGLGPHSVRHT 244 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 +AT D GA + G +++ + YT + + Sbjct: 245 AATHMLDGGADLRIVQELLGHSSLNTTQIYTHVSSQR 281 >gi|69246761|ref|ZP_00604109.1| Phage integrase:Phage integrase, N-terminal SAM-like [Enterococcus faecium DO] gi|257878024|ref|ZP_05657677.1| phage integrase [Enterococcus faecium 1,230,933] gi|257881190|ref|ZP_05660843.1| phage integrase [Enterococcus faecium 1,231,502] gi|257884853|ref|ZP_05664506.1| phage integrase [Enterococcus faecium 1,231,501] gi|257889777|ref|ZP_05669430.1| phage integrase [Enterococcus faecium 1,231,410] gi|257892286|ref|ZP_05671939.1| phage integrase [Enterococcus faecium 1,231,408] gi|261207608|ref|ZP_05922293.1| phage integrase [Enterococcus faecium TC 6] gi|289565120|ref|ZP_06445573.1| tyrosine recombinase XerC [Enterococcus faecium D344SRF] gi|293556768|ref|ZP_06675331.1| tyrosine recombinase XerC [Enterococcus faecium E1039] gi|293563426|ref|ZP_06677875.1| tyrosine recombinase XerC [Enterococcus faecium E1162] gi|293568161|ref|ZP_06679497.1| tyrosine recombinase XerC [Enterococcus faecium E1071] gi|294614817|ref|ZP_06694712.1| tyrosine recombinase XerC [Enterococcus faecium E1636] gi|294617496|ref|ZP_06697127.1| tyrosine recombinase XerC [Enterococcus faecium E1679] gi|294622307|ref|ZP_06701350.1| tyrosine recombinase XerC [Enterococcus faecium U0317] gi|68195115|gb|EAN09575.1| Phage integrase:Phage integrase, N-terminal SAM-like [Enterococcus faecium DO] gi|257812252|gb|EEV41010.1| phage integrase [Enterococcus faecium 1,230,933] gi|257816848|gb|EEV44176.1| phage integrase [Enterococcus faecium 1,231,502] gi|257820691|gb|EEV47839.1| phage integrase [Enterococcus faecium 1,231,501] gi|257826137|gb|EEV52763.1| phage integrase [Enterococcus faecium 1,231,410] gi|257828665|gb|EEV55272.1| phage integrase [Enterococcus faecium 1,231,408] gi|260077991|gb|EEW65697.1| phage integrase [Enterococcus faecium TC 6] gi|289163127|gb|EFD10974.1| tyrosine recombinase XerC [Enterococcus faecium D344SRF] gi|291589151|gb|EFF20963.1| tyrosine recombinase XerC [Enterococcus faecium E1071] gi|291592279|gb|EFF23893.1| tyrosine recombinase XerC [Enterococcus faecium E1636] gi|291596236|gb|EFF27498.1| tyrosine recombinase XerC [Enterococcus faecium E1679] gi|291598199|gb|EFF29297.1| tyrosine recombinase XerC [Enterococcus faecium U0317] gi|291601100|gb|EFF31389.1| tyrosine recombinase XerC [Enterococcus faecium E1039] gi|291604687|gb|EFF34172.1| tyrosine recombinase XerC [Enterococcus faecium E1162] Length = 301 Score = 113 bits (284), Expect = 3e-23, Method: Composition-based stats. Identities = 47/281 (16%), Positives = 98/281 (34%), Gaps = 34/281 (12%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFE---SYFDQIIRKSGDFDYRKITTKHIRSGVESRK 127 L++LI E + ++ ++E +F + +SGD D K +R + + Sbjct: 11 LRYLIVE-------RGYSEKTKEAYEEDILHFKHFLEESGDADLLKAEYFTVRVYLSALA 63 Query: 128 H-----TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 + +S + + S+R +++ +++E + NP V K+ R + + +MQ Sbjct: 64 DHRPSYSRNSISRKIASLRSFYQYLLKEEVIKENPFSYVHLKKKNLRLPRFFYENEMQAL 123 Query: 183 KSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVEL 237 + R E L SG+R S+ V + ++ + K L Sbjct: 124 FDSVAGDSPLDLRNRALLEVLYGSGIRLSECSSLSVSDIDFDSEVMLIHGKGNKERYAPL 183 Query: 238 ------------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS 285 +G L+ + F+N+ + + T K+ ++ Sbjct: 184 GSFAQDALQEYFREGRQVLMTKYHEEHDIVFVNHHGKPITPTGIEYVLNQMIKKSSLDSD 243 Query: 286 --AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R AT + GA + G + + Y Sbjct: 244 IHPHMLRHTFATHLLNNGADLRTVQELLGHANLSTTQIYAH 284 >gi|306818595|ref|ZP_07452318.1| tyrosine recombinase XerD [Mobiluncus mulieris ATCC 35239] gi|304648768|gb|EFM46070.1| tyrosine recombinase XerD [Mobiluncus mulieris ATCC 35239] Length = 319 Score = 113 bits (284), Expect = 3e-23, Method: Composition-based stats. Identities = 44/284 (15%), Positives = 92/284 (32%), Gaps = 32/284 (11%) Query: 85 GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKHTPSS--------A 133 + ++ +++ + + G ++T + V + +S Sbjct: 28 RGASPHTIAAYQRDLQRYVAYLQILGRDTLAQVTEIDLEGFVRALGDGFASFPPLGSTSV 87 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG---- 189 + L + R ++ + N SV+ K E+M+ + S Sbjct: 88 RRCLAAARSWHRYLFDSGSLGANVASSVKPAKLPRRLPETLNLEEMEALLAAASSPGDSN 147 Query: 190 -SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELP-----DGF 241 + R EFL SG R S++ + + ++ G + + Sbjct: 148 SLRDRALLEFLYASGARISEAMNLVLDDIDFETEPALVRLFGKGRKERISMLGRQACQAL 207 Query: 242 MKLL-AMTPI------GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKF 292 L + P + F+N + M+ +A A +A +++ H +R Sbjct: 208 QAYLVRVRPTLAEKGQSRGRVFLNTYGKPMSRQTAWAIIQAAAKRAQIDRPVHPHTLRHC 267 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336 AT GA + G +V E YTK + ++ L + S Sbjct: 268 FATHLLQGGADIRVVQELLGHASVTTTEIYTKVSKQMLLEVYAS 311 >gi|238756290|ref|ZP_04617605.1| Tyrosine recombinase [Yersinia ruckeri ATCC 29473] gi|238705496|gb|EEP97898.1| Tyrosine recombinase [Yersinia ruckeri ATCC 29473] Length = 276 Score = 113 bits (284), Expect = 3e-23, Method: Composition-based stats. Identities = 40/253 (15%), Positives = 83/253 (32%), Gaps = 19/253 (7%) Query: 91 SRISFESYFDQIIRKSGDFDYRK---ITTKHIRSGVESRKHTP---SSAIQFLTSMRVLF 144 + S+ ++ +G + + +RS V K +S L+++R Sbjct: 2 TITSYSRQLQALMELAGQMELSHWENLDAAQVRSLVSRSKRAGLQSASLALRLSALRSFL 61 Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQPRLAFEFLLY 201 W V Q + NP V P+ + +++ + + R E + Sbjct: 62 DWLVSQGVLHANPAKGVSTPRTGRHLPKNIDVDEVSRLLDIDLNDPLAVRDRAMLEVMYG 121 Query: 202 SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI--------ITVELPDGFMKLLAMTPIGKE 253 +GLR ++ +H+ I G+ V ++ L + + Sbjct: 122 AGLRLAELVGMDGKHVDLASGEIWVMGKGSKERKVPMGATAVTWLQHWLALRDLFAPSDD 181 Query: 254 TFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATY 311 F+ N ++++A F K GV + H +R AT ++ + Sbjct: 182 AIFLANTGKRISARNVQKRFAEWGIKQGVSSHIHPHKLRHSFATHMLESSGDLRAVQELL 241 Query: 312 GWKTVDQAETYTK 324 G + + YT Sbjct: 242 GHANLTTTQIYTH 254 >gi|125623479|ref|YP_001031962.1| integrase-recombinase [Lactococcus lactis subsp. cremoris MG1363] gi|124492287|emb|CAL97219.1| integrase-recombinase [Lactococcus lactis subsp. cremoris MG1363] gi|300070227|gb|ADJ59627.1| integrase-recombinase [Lactococcus lactis subsp. cremoris NZ9000] Length = 311 Score = 113 bits (284), Expect = 3e-23, Method: Composition-based stats. Identities = 41/302 (13%), Positives = 94/302 (31%), Gaps = 36/302 (11%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS-----GDFDYRKITTKHIR---SG 122 + L+ EY G+ + + ++E + D+ I + D I H + S Sbjct: 3 FEQLVKEYLLELKLGNYSKRTMETYEQHIDKFIDFYRKEICKEMDIYAINKMHYKLFISQ 62 Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 + + L S + + + +R++ + +P S++ K + + + ++++ Sbjct: 63 LLDNSLRATYINAILKSNKAFYSYLIREQVLKTSPMDSIKLLKETKQALTTFNDDEVKAM 122 Query: 183 KSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238 + W+ + + + L +G+R S+ L + + K V + Sbjct: 123 LNVWNFNTYLNARNKCIIAVLADTGIRISELINIKDSDLTDQYIRV-LGKGDKWRVVPIS 181 Query: 239 DGFMKLLAMTPI-GKETF--FINNDKQKMNATQF------SIWFK--------------A 275 + LL F N + + K Sbjct: 182 NELNYLLTKYKRLRDNHFNKIRNRNGKVRELDSELFLGKTGRSIKTITNIEVMITQTGLQ 241 Query: 276 KATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335 +A V S H R + S + G + G + + Y + +L K Sbjct: 242 ANVRASVRCSPHQFRHYWTCKSLELGQDIFTISKLLGHTNLSTTQIYLQKLTNEQLISKA 301 Query: 336 SR 337 + Sbjct: 302 VK 303 >gi|187930760|ref|YP_001901247.1| site-specific tyrosine recombinase XerC [Ralstonia pickettii 12J] gi|254799354|sp|B2U7W2|XERC_RALPJ RecName: Full=Tyrosine recombinase xerC gi|187727650|gb|ACD28815.1| tyrosine recombinase XerC [Ralstonia pickettii 12J] Length = 328 Score = 113 bits (284), Expect = 3e-23, Method: Composition-based stats. Identities = 54/289 (18%), Positives = 100/289 (34%), Gaps = 40/289 (13%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIR----KSGDFDYRKITTKHIRSGVESR--- 126 I+ Y + + L+ ++ S+ + R + + D ++ + HIR + Sbjct: 19 IAAYLDALKFERQLSPHTLQSYTRELAVLQRLGAQHAANIDLTQLQSHHIRRMMAQLHGD 78 Query: 127 KHTPSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQ 181 + S + L++ R FKW A+R V NP V PK + + E M+Q Sbjct: 79 GLSGRSIARALSAWRGWFKWMALRDAAVTANPVDGVRAPKSPKRLPKALSVEQAVALMEQ 138 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN------IFSIKTQ------KT 229 +E + R E GLR S+ ++H++ ++ + K Sbjct: 139 LPGDDAETIRDRAVNELFYSCGLRLSELVSLDMRHVKAGAYESASWLDLEAREVQVLGKG 198 Query: 230 GTIITVEL----PDGFMKLLA---------MTPIGKETFFINNDKQKMNATQFSIWFKAK 276 TV + + LA P F++ +++ Q + K Sbjct: 199 SKRRTVPVGTKATEALAAWLAVRAQLAKSDAAPEDAHALFLSPRGKRLAQRQIQLRMKRN 258 Query: 277 ATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 A AGV H +R AT + + G ++ + YT Sbjct: 259 AIAAGVPADVHPHVLRHSFATHMLQSSGDLRAVQELLGHASIASTQVYT 307 >gi|312794237|ref|YP_004027160.1| integrase family protein [Caldicellulosiruptor kristjanssonii 177R1B] gi|312181377|gb|ADQ41547.1| integrase family protein [Caldicellulosiruptor kristjanssonii 177R1B] Length = 290 Score = 113 bits (284), Expect = 3e-23, Method: Composition-based stats. Identities = 41/282 (14%), Positives = 94/282 (33%), Gaps = 24/282 (8%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS---------GVE 124 L+ E+ + + I++ + ++ + + Sbjct: 3 LLEEFEQWLRAIDHTQKTVINYVKDIELFLKWYEQTTGEEFRPSAYNEFVLTQYKSYMLT 62 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK--RKTEGIRPWTKEDMQQF 182 +K PSS + + ++R + V + Y+ NP ++++ K R +K+D+ + Sbjct: 63 VQKLKPSSVNRKIQALRKFGCFLVAKGYLQTNPAENLKQVKDVRDNLAPAALSKQDVFRL 122 Query: 183 KSFWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHLQNNI--FSIKT-QKTGTIITVEL 237 + + R E L +GLR S+ ++ ++ ++ K + L Sbjct: 123 RKTVYMYGKIRDIAIIELFLNTGLRLSELANLKIEDIEIGERKGKLRVLGKGRKYREIPL 182 Query: 238 PDGFMKLL-----AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKF 292 K+L I + F + + + K A +AG+ H +R Sbjct: 183 NSEIRKILSQYLEKRKHIDCDFLFTTSTGKPLQPNSIYRLVKRYAERAGIELHPHMLRHT 242 Query: 293 SATISADAGATAHELMATYGWKTVDQAETY---TKGADRIRL 331 A D G ++ G + ++ Y ++ L Sbjct: 243 FAQTLIDKGTNVFDVKYLLGHEKLETTMRYKQPSREVQEKAL 284 >gi|304389555|ref|ZP_07371517.1| tyrosine recombinase XerD [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315656798|ref|ZP_07909685.1| tyrosine recombinase XerD [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|304327108|gb|EFL94344.1| tyrosine recombinase XerD [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315492753|gb|EFU82357.1| tyrosine recombinase XerD [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 318 Score = 113 bits (284), Expect = 3e-23, Method: Composition-based stats. Identities = 54/289 (18%), Positives = 92/289 (31%), Gaps = 43/289 (14%) Query: 66 KKPTTLKWLISEYRKSAHWG------SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119 P T+ + R+ + SL + ES+ + GD+ Sbjct: 30 ASPHTVAAYTRDLRRYITFLIANGVNSLDEVTLPVLESFARALEAGFGDYAAVA------ 83 Query: 120 RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179 PSSA + + S+R ++A V NP + K T E++ Sbjct: 84 ----------PSSARRVIASVRSWHRYAYETGVVRANPTKGIAPAKVGAHLPTVLTVEEV 133 Query: 180 QQFKSFWSEG-----SQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTI 232 Q S + R EFL +G R S++ V + I ++ G Sbjct: 134 QTLLEAASAPGDDNALRDRALLEFLYATGARISEAVNLAVDDINLDEEIPLVRLFGKGRK 193 Query: 233 ITVELPDGFMKL------------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA 280 + + K LA + F+N + ++ +A A +A Sbjct: 194 ERLSMLGHLAKDALEAYLVRVRPRLAEKGRSQGRVFLNTLGRPLSRQSAWAIIQAAAQRA 253 Query: 281 --GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 V H +R AT GA + G +V + YTK ++ Sbjct: 254 QITVPVGPHTLRHCFATHLLQGGADVRAVQELLGHASVTTTQIYTKVSN 302 >gi|164688594|ref|ZP_02212622.1| hypothetical protein CLOBAR_02239 [Clostridium bartlettii DSM 16795] gi|164603007|gb|EDQ96472.1| hypothetical protein CLOBAR_02239 [Clostridium bartlettii DSM 16795] Length = 295 Score = 113 bits (284), Expect = 3e-23, Method: Composition-based stats. Identities = 41/276 (14%), Positives = 100/276 (36%), Gaps = 21/276 (7%) Query: 74 LISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDF-----DYRKITTKHIRSGVESRK 127 ++ EY L+ N+ S+ + + + D + +E Sbjct: 3 VLEEYLNYIEKNKKLSKNTVASYNRDLKKYVEYLNERNINLSDVVENDIISYLIELEKED 62 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + +S + ++S++ + + + +P ++++PK K + T++++ + F Sbjct: 63 ISVASISRMISSIKSYHDYLFFNKILDTDPSKNIKKPKVKRVDVEILTEDEVDKLLKFED 122 Query: 188 EGSQPR----LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG--- 240 + R FE L +G++ ++ ++ + I I + L + Sbjct: 123 LSTPKRIRDKAIFEILYGTGIKVTELIDMNLEDVDLEIDYIYCGSGKNQRVIPLCETTEF 182 Query: 241 -FMKLL-----AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHG--VRKF 292 +K + +T ++ F+N Q+ K A +A +NK+ + +R Sbjct: 183 YLLKYINESRNELTYPEEKALFVNAQGQRFTRQGLWKLIKKYAKEADINKNINPTVLRNS 242 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 A + GA + G + + Y K D+ Sbjct: 243 FAIHLLNGGANVAVVNKILGNSNLSSLQLYLKHIDK 278 >gi|315089284|gb|EFT61260.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL072PA1] Length = 315 Score = 113 bits (284), Expect = 3e-23, Method: Composition-based stats. Identities = 43/296 (14%), Positives = 97/296 (32%), Gaps = 27/296 (9%) Query: 56 PKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI---IRKSGDFDYR 112 + P +L + ++ + N+ + + + GD Sbjct: 3 KPPPTRVGAGQLPMSLTVPVEDFCGHLSALRRSPNTIRGYRADLIDLMGHAHSHGDDTLG 62 Query: 113 KITTKHIRSGVESRKHTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169 +I T +R+ + + +SA + ++ RV F+WA + ++ +P ++ K Sbjct: 63 RIGTSQVRAWLADTRVAGASAATMQRRWSAARVFFRWAANEGLISADPTTALNSAKVPKR 122 Query: 170 GI---------RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN 220 + Q G++ E L GLR + C + + + Sbjct: 123 LPATLGVDQARHILDEAVAQARHDESPHGARDAAILEVLYGGGLRVGELCGLDLGDVDRS 182 Query: 221 IFSIK-TQKTGTIITVELPDGFMKLLAMT---------PIGKETFFINNDKQKMNATQFS 270 ++K T K TV + ++ + P + F+ ++++ Sbjct: 183 RRTVKVTGKGDKERTVPMGAPALRAIDTWLPRREEWVGPHSGQALFLGARGRRIDQRVVR 242 Query: 271 IWFK--AKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 +A + HG+R AT + GA + G +++ + YT Sbjct: 243 RVVHTHLRAEPDSPDLGPHGLRHAMATHLLEGGADLRTVQDILGHESLATTQIYTH 298 >gi|256828291|ref|YP_003157019.1| integrase family protein [Desulfomicrobium baculatum DSM 4028] gi|256577467|gb|ACU88603.1| integrase family protein [Desulfomicrobium baculatum DSM 4028] Length = 312 Score = 113 bits (284), Expect = 3e-23, Method: Composition-based stats. Identities = 42/264 (15%), Positives = 90/264 (34%), Gaps = 24/264 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDF--------DYRKITTKHIRSGVESRKHTPSSAIQF 136 + + ++ + + G + K + + R SS + Sbjct: 23 RGYSPATVAAYGTDLEGAHLFLGRRSKGFDAPGEVTKADITAYLADLHRRGLAKSSVCRK 82 Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQFKSFWSEGSQP 192 L+++R +++ +++ V +PC ++ PK + + ++ + EG + Sbjct: 83 LSALRAFYRFLRQRKMVVEDPCAALANPKLPKVHPKVLNVDQAIHLVETEITLDPEGLRD 142 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLA----- 246 E L SGLR S++ H+ + ++ K V L + LA Sbjct: 143 LALLEVLYGSGLRVSEALGLDFAHVDLDQKLVRVLGKGRKERLVPLTGPAAERLARYIEQ 202 Query: 247 ----MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADA 300 ++ F+ +++ Q K A ++G S H +R A+ A Sbjct: 203 RGAFAPAAREQAVFLGKRGGRLSRKQADRIVKEMAVRSGAPCSISPHTLRHSFASHMLQA 262 Query: 301 GATAHELMATYGWKTVDQAETYTK 324 GA + G + + YT Sbjct: 263 GADLRSVQELLGHSRISTTQRYTH 286 >gi|237654487|ref|YP_002890801.1| tyrosine recombinase XerC [Thauera sp. MZ1T] gi|237625734|gb|ACR02424.1| tyrosine recombinase XerC [Thauera sp. MZ1T] Length = 304 Score = 113 bits (284), Expect = 3e-23, Method: Composition-based stats. Identities = 44/272 (16%), Positives = 90/272 (33%), Gaps = 25/272 (9%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---K 127 L WL ++ ++ + ++ + ++R + + + IR V Sbjct: 21 LAWLATQ-------RRVSPLTLTAYRAGLQALLRLAEEHPPESLQPADIRRFVARLHGEG 73 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 S + L++ R ++W VR+ V INP L + PK + R + E Sbjct: 74 QQGRSIARHLSAWRGFYRWLVREHGVRINPALGIRPPKSPSTLPRVLSPEQANALLDPEP 133 Query: 188 EGS---QPRLAFEFLLYSGLRCSDSCRAGVQH----------LQNNIFSIKTQKTGTIIT 234 + + FE SGLR ++ + + +T G Sbjct: 134 QNLLEIRDIAMFELFYSSGLRVAELAGLDIDSGLDLAEGLVTVTGKRQRQRTVPVGGKAI 193 Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWF--KAKATKAGVNKSAHGVRKF 292 L + G+ F+ D +++ + +A+A GV+ H +R Sbjct: 194 AALRPWLEIRAGLAAAGERALFVTRDGHRLSTRGIASRLGTRAQALGLGVHVHPHMLRHS 253 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTK 324 A+ + + G ++ + YT Sbjct: 254 FASHLLQSSGDLRAVQELLGHASIRSTQIYTH 285 >gi|326391735|ref|ZP_08213258.1| tyrosine recombinase XerD [Thermoanaerobacter ethanolicus JW 200] gi|325992235|gb|EGD50704.1| tyrosine recombinase XerD [Thermoanaerobacter ethanolicus JW 200] Length = 290 Score = 113 bits (284), Expect = 3e-23, Method: Composition-based stats. Identities = 35/249 (14%), Positives = 92/249 (36%), Gaps = 17/249 (6%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDF-----DYRKITTKHIRSGVESRKHTPSSAIQFLTS 139 L+ N+ S+ +Q + + + +K T + ++ + + ++ + L+S Sbjct: 17 KKLSKNTLESYNRDINQFLNYLEEIGINCYNVKKSTILNYLYYLKKKGKSQATVSRNLSS 76 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195 ++ + + ++ + +P + PK + + T E + S +G + + Sbjct: 77 LKAFYHYLFMKKKIEEDPTYMINTPKVEKKPPTTLTVEQVDMLLSLDFGDDEKGLRDKAL 136 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII------TVELPDGFMKLLAMTP 249 E L +GL+ S+ ++ + + + + + +E +++ Sbjct: 137 IELLYATGLKVSEVISLKLEDVNLSYGYVVIRSNKERVIPIGSHAIEALKNYIEKGRKAK 196 Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKA--GVNKSAHGVRKFSATISADAGATAHEL 307 G+ T F+N QK+ + K G + + +R+ A GA + Sbjct: 197 NGENTLFLNLRGQKLTRQGCWKIIREYTDKINPGFPVTPNTLRQSFAQHMLQNGADIRAV 256 Query: 308 MATYGWKTV 316 G++T Sbjct: 257 QEMLGYQTD 265 >gi|313813390|gb|EFS51104.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL025PA1] gi|327334220|gb|EGE75934.1| putative tyrosine recombinase XerC [Propionibacterium acnes HL097PA1] Length = 315 Score = 113 bits (284), Expect = 3e-23, Method: Composition-based stats. Identities = 43/284 (15%), Positives = 96/284 (33%), Gaps = 27/284 (9%) Query: 68 PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSGVE 124 P +L + ++ + N+ + + + GD +I T +R+ + Sbjct: 15 PMSLTVPVEDFCGHLSALRRSPNTIRGYRADLIDLMGHAHSHGDDALGRIGTSQVRAWLA 74 Query: 125 SRKHTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI---------R 172 + +SA + ++ RV F+WA + ++ +P ++ K Sbjct: 75 DTRVAGASAATMQRRWSAARVFFRWAANEGLISADPTTALNSAKVPKRLPATLGVDQARH 134 Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGT 231 + Q G++ E L GLR + C + + + ++K T K Sbjct: 135 ILDEAVAQARHDESPHGARDAAILEVLYGGGLRVGELCGLDLGDVDRSRRTVKVTGKGDK 194 Query: 232 IITVELPDGFMKLLAMT---------PIGKETFFINNDKQKMNATQFSIWFK--AKATKA 280 TV + ++ + P + F+ ++++ +A Sbjct: 195 ERTVPMGAPALRAIDTWLPRREEWVGPHSGQALFLGARGRRIDQRVVRRVVHTHLRAEPD 254 Query: 281 GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 + HG+R AT + GA + G +++ + YT Sbjct: 255 SPDLGPHGLRHAMATHLLEGGADLRTVQDILGHESLATTQIYTH 298 >gi|309804168|ref|ZP_07698246.1| site-specific recombinase, phage integrase family [Lactobacillus iners LactinV 11V1-d] gi|309805694|ref|ZP_07699734.1| site-specific recombinase, phage integrase family [Lactobacillus iners LactinV 09V1-c] gi|308163751|gb|EFO66020.1| site-specific recombinase, phage integrase family [Lactobacillus iners LactinV 11V1-d] gi|308164947|gb|EFO67190.1| site-specific recombinase, phage integrase family [Lactobacillus iners LactinV 09V1-c] Length = 179 Score = 113 bits (284), Expect = 3e-23, Method: Composition-based stats. Identities = 29/160 (18%), Positives = 53/160 (33%), Gaps = 15/160 (9%) Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVEL 237 + + G + R E L +G+R S+ + + IK K + + Sbjct: 2 INMPDTTTDLGIRDRAILETLYATGMRVSEVINLNEDSIHEELHLIKVFGKGSKQRLIPI 61 Query: 238 PDGFMKLLAMTPIG------------KETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284 + M + I ++ F+N+ K+ K AG+NK Sbjct: 62 SNVAMSWIKKYQITVRNKTLLESGKFEKAIFLNSRGGKITRQAVWQMIKRYCQLAGINKN 121 Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 + H +R AT + GA + G + + YT Sbjct: 122 VTPHTLRHTFATHLLENGADLRIVQEILGHSDISTTQIYT 161 >gi|260592787|ref|ZP_05858245.1| tyrosine recombinase XerD [Prevotella veroralis F0319] gi|260535318|gb|EEX17935.1| tyrosine recombinase XerD [Prevotella veroralis F0319] Length = 292 Score = 113 bits (284), Expect = 3e-23, Method: Composition-based stats. Identities = 47/276 (17%), Positives = 101/276 (36%), Gaps = 25/276 (9%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD----YRKITTKHIRSGVESRK 127 K L +Y K + + + + + R D + + + +R +E Sbjct: 2 KDLFLDYLKLER--NYSPATVKHYRDDLKEFERFFQGLDQQLSWESVDSDIVRRWMEYMM 59 Query: 128 HTPSSA---IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF-- 182 ++A + L+++R +++A+R+ V +P ++ P+RK + + +M Q Sbjct: 60 DKGNAASSVNRRLSALRSFYRYALRRNLVVKDPVHGIQGPRRKRPLPQFLKESEMDQLLD 119 Query: 183 KSFWSEGSQPRLAFEFL---LYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELP 238 + W++ + LA + +G+R S+ + + N T K + Sbjct: 120 ERMWTDSYKDVLARTIIVTFYETGVRISELIGLNDKDVDYINCEIKVTGKRDKQRIIPFG 179 Query: 239 DGFMKLLAMTPIGKE--------TFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHG 288 D +K L ++ FF +++ Q K +K +S H Sbjct: 180 DELLKTLTAYQQQRDVETESESVAFFRTEKGKRVTDEQVRQMVKINLSKVSTLKKRSPHV 239 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 +R AT + A + G +++ E YT Sbjct: 240 LRHTFATAMLNHDAGLESVKELLGHESLSTTEIYTH 275 >gi|70733299|ref|YP_263073.1| site-specific tyrosine recombinase XerC [Pseudomonas fluorescens Pf-5] gi|123748313|sp|Q4K3W0|XERC_PSEF5 RecName: Full=Tyrosine recombinase xerC gi|68347598|gb|AAY95204.1| tyrosine recombinase XerC [Pseudomonas fluorescens Pf-5] Length = 298 Score = 113 bits (284), Expect = 3e-23, Method: Composition-based stats. Identities = 33/259 (12%), Positives = 88/259 (33%), Gaps = 19/259 (7%) Query: 85 GSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIR---SGVESRKHTPSSAIQFLT 138 ++ ++ ++ +++ K + + + +R + + + + S + L+ Sbjct: 16 RQVSPHTLQAYRRDLEKVLGFCEKMQVRSWTDLDIQGLRSLIARLHQQGQSSRSLARLLS 75 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRL 194 ++R L+ + R+ +P + PK + + + Q E + + Sbjct: 76 AVRGLYHYLNREGLCTHDPANGLAPPKGERRLPKTLDTDRTLQLLDGAVEDDFLAHRDQA 135 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV--------ELPDGFMKLLA 246 E GLR S+ + L ++ G+ V + ++ L A Sbjct: 136 ILELFYSCGLRLSELTSLNLDQLDLADGLVQVHGKGSKTRVLPVGKKARSALEQWLPLRA 195 Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAK-ATKAGVNKSAHGVRKFSATISADAGATAH 305 ++ F++ +++ + KA + G N H +R A+ ++ Sbjct: 196 LSNPPDGALFVSQKGRRLGPRAIQLRVKAAGERELGQNLHPHMLRHSFASHLLESSQDLR 255 Query: 306 ELMATYGWKTVDQAETYTK 324 + G + + YT Sbjct: 256 AVQELLGHSDIKTTQIYTH 274 >gi|313619210|gb|EFR90975.1| tyrosine recombinase XerC [Listeria innocua FSL S4-378] Length = 300 Score = 113 bits (284), Expect = 3e-23, Method: Composition-based stats. Identities = 42/273 (15%), Positives = 99/273 (36%), Gaps = 27/273 (9%) Query: 77 EYRKSAHWGSLAVNSRISFESYFDQIIRKSGD---FDYRKITTKHIRSGVESRKHT---P 130 +Y S + + ++ ++E+ R + +Y+++T +R + K Sbjct: 13 DYLHSER--NYSEHTSTAYENDLSDFRRFLNEQAIIEYQQVTFLDVRIYLTELKQKSFSR 70 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ-----FKSF 185 ++ + ++S+R + + +R+ + NP V K + + + E+M+ ++ Sbjct: 71 TTVARKISSLRSFYTFLLRENVITENPFTYVSHAKNQLRLPKFFYSEEMEALFQVVYEDN 130 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVE-------- 236 + + R+ E L +G+R S+ + L + +I K V Sbjct: 131 ETLTLRDRVILEVLYGTGIRVSECAGIMLSDLDTSYQAILIRGKGNKERYVPFGAYAEDA 190 Query: 237 LPDGFM---KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRK 291 + D +L+ + IN+ + +KA + + H +R Sbjct: 191 ITDYLSGRIELMTRFKKTHDALLINHYGDPLTTRGIRYCLTKIISKASLTRKIHPHMLRH 250 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTK 324 AT + GA + G ++ + YT Sbjct: 251 TFATDLLNNGADMRTVQELLGHASLSSTQIYTH 283 >gi|66047873|ref|YP_237714.1| Phage integrase:Phage integrase, N-terminal SAM-like [Pseudomonas syringae pv. syringae B728a] gi|63258580|gb|AAY39676.1| Phage integrase:Phage integrase, N-terminal SAM-like [Pseudomonas syringae pv. syringae B728a] Length = 317 Score = 113 bits (284), Expect = 3e-23, Method: Composition-based stats. Identities = 54/277 (19%), Positives = 105/277 (37%), Gaps = 32/277 (11%) Query: 84 WGSLA-VNSRISFESYFDQIIRKS---GDFDYRKITTKHI---RSGVESRKHTPSSAIQF 136 + +L +R ++++ D+R++T H+ R+ +E R ++ + Sbjct: 30 FANLDNPRTRRAYQNDLTDFSSFIVLASADDFRQVTRSHVLAWRADLEQRGLAGATIRRK 89 Query: 137 LTSMRVLFKWAVRQE-YVAINPCLSVERPKRKT-EGIRPWTKED-----MQQFKSFWSEG 189 L ++ LF + V NP V+RP+ ++ EG P + + +G Sbjct: 90 LAALASLFDHLLENNAVVGGNPVHGVKRPRIESNEGKTPALGDHQAKALLDAPDESTLKG 149 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKT-QKTGTIITVELPDG------ 240 + R LLY GLR ++ + V + + I +K K G + + L Sbjct: 150 LRDRAMLAVLLYHGLRREEAAQLQVSDIQERRGIQHLKIHGKGGKVRYLPLHPVAAGRIH 209 Query: 241 --FMKLLAMTPIGKETFFINNDKQ----KMNATQFSIWFKAKATKAGVNKS---AHGVRK 291 + K FI+ + ++A A A KAG+ HG+R Sbjct: 210 MYLERSGHHLVDKKVPLFISLRGKSTGAGVSANGIYTVVGAYAKKAGIKVDGLGVHGLRA 269 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 +AT + + A ++ A G + + Y + +R Sbjct: 270 TAATNALEHEADIAKVQAWLGHANISTTKIYDRRENR 306 >gi|269467899|gb|EEZ79638.1| site-specific recombinase XerC [uncultured SUP05 cluster bacterium] Length = 292 Score = 113 bits (284), Expect = 3e-23, Method: Composition-based stats. Identities = 39/256 (15%), Positives = 93/256 (36%), Gaps = 16/256 (6%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG------VESRKHTPSSAIQFLT 138 A+N++ ++ +++ + + + + + + + + + L+ Sbjct: 16 RGYALNTQQAYARDLQKLLAFTQTQSVERWASLSSENLNLFVMTMRHQNISGRTIRRHLS 75 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG---SQPRLA 195 S+R + V Q + +N ++ PK + E + Q + S + Sbjct: 76 SIRGFLSYLVNQGLLEVNCAQGLQSPKVAKSLPKTLDYERLVQMLTPKSSAFSELRDAAM 135 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII-TVELPDGFMK----LLAMTPI 250 E L GLR S+ ++ + + ++ G+ + L + K L T Sbjct: 136 VEVLYSCGLRVSELVGLDIEDVDASQGFLRVMGKGSKVRYTPLGESAQKSINRYLQKTSH 195 Query: 251 GKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELM 308 + F+NN +++++ K +A G+ N H +R +AT + + Sbjct: 196 TNKALFVNNRQERISTRTVQNIIKNRALSVGIKVNVHPHMLRHAAATHFLQSSHDLRSVQ 255 Query: 309 ATYGWKTVDQAETYTK 324 G K++ + YT Sbjct: 256 EFLGHKSIKSTQVYTH 271 >gi|24112307|ref|NP_706817.1| putative integrase encoded by prophage CP-933K; partial [Shigella flexneri 2a str. 301] gi|30062420|ref|NP_836591.1| putative integrase encoded by prophage CP-933K; partial [Shigella flexneri 2a str. 2457T] gi|217326121|ref|ZP_03442205.1| phage integrase family protein [Escherichia coli O157:H7 str. TW14588] gi|254791924|ref|YP_003076761.1| integrase encoded by prophage CP-933K [Escherichia coli O157:H7 str. TW14359] gi|261224477|ref|ZP_05938758.1| integrase encoded by prophage CP-933K [Escherichia coli O157:H7 str. FRIK2000] gi|261254531|ref|ZP_05947064.1| integrase encoded by prophage CP-933K [Escherichia coli O157:H7 str. FRIK966] gi|24051165|gb|AAN42524.1| putative integrase encoded by prophage CP-933K; partial [Shigella flexneri 2a str. 301] gi|30040666|gb|AAP16397.1| putative integrase encoded by prophage CP-933K; partial [Shigella flexneri 2a str. 2457T] gi|217322342|gb|EEC30766.1| phage integrase family protein [Escherichia coli O157:H7 str. TW14588] gi|254591324|gb|ACT70685.1| integrase encoded by prophage CP-933K [Escherichia coli O157:H7 str. TW14359] gi|313648473|gb|EFS12916.1| integrase [Shigella flexneri 2a str. 2457T] gi|320193173|gb|EFW67813.1| Phage integrase [Escherichia coli O157:H7 str. EC1212] Length = 256 Score = 113 bits (284), Expect = 3e-23, Method: Composition-based stats. Identities = 46/251 (18%), Positives = 88/251 (35%), Gaps = 19/251 (7%) Query: 96 ESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH--TPSSAIQFLTSMRVLFKWAVRQEYV 153 S I R D ITTK I + + +SA +++ F+ A+ + ++ Sbjct: 1 MSKIKAIRRGLPDAPLEDITTKEIAAMLNGYIDEGKAASAKLIRSTLSDAFREAIAEGHI 60 Query: 154 AINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAG 213 NP + K + R E ++ +++ S RLA E + +G R D C Sbjct: 61 TTNPVAATRAAKSEVRRSRLTADEYLKIYQAAESSPCWLRLAMELAVVTGQRVGDLCEMK 120 Query: 214 VQHLQNNIFSIKTQKTGTIITVE---------LPDGFMKLLAMTPIGKETFFINNDKQKM 264 + + ++ KTG I + + +G ET + ++ + Sbjct: 121 WSDIVDGYLYVEQSKTGVKIAIPTTLHVDALGISMKETLDKCKEILGGETIIASTRREPL 180 Query: 265 NATQFSIWFKAKATKAGV-----NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319 ++ S +F +G+ + H +R + + + G K+ A Sbjct: 181 SSGTVSRYFMRARKASGLSFEGDPPTFHELR-SLSARLYEKQISDKFAQHLLGHKSDTMA 239 Query: 320 ETYTKGADRIR 330 Y DR R Sbjct: 240 SQY--RDDRGR 248 >gi|221134095|ref|ZP_03560400.1| tyrosine recombinase [Glaciecola sp. HTCC2999] Length = 304 Score = 113 bits (284), Expect = 3e-23, Method: Composition-based stats. Identities = 38/259 (14%), Positives = 92/259 (35%), Gaps = 19/259 (7%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH---TPSSAIQFLTSMR 141 +++++ ++ ++ + +T + ++ V K + S L+++R Sbjct: 27 RQYSIHTQSAYINHILVCKDLLTLKKWSSLTVEQVKRMVGLSKKAGLSARSIALRLSALR 86 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE---GSQPRLAFEF 198 + V Q + NP +V PK + E ++ +F E ++ + FE Sbjct: 87 QFCHFLVEQHQLTQNPAEAVNAPKMGKPLPKHLHVEQLEGLLNFTPESVHEARDKAMFEL 146 Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD-----------GFMKLLAM 247 + GLR S+ + + ++ K G + + + ++ + Sbjct: 147 VYGCGLRLSEVTGLNLLDVLDDHILNVNGKGGKQRRLPIGEHAWRAVQDWLLWRVQFITS 206 Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAH 305 + F++ ++ Q + ATK G++ S H +R AT ++ Sbjct: 207 AAPDEPALFLSQRGGRLGNRQVAKRLTQLATKQGIDTHISPHKLRHSFATHVLESSGDLR 266 Query: 306 ELMATYGWKTVDQAETYTK 324 + G + + YT Sbjct: 267 AVQELLGHANLATTQVYTH 285 >gi|78067906|ref|YP_370675.1| site-specific tyrosine recombinase XerC [Burkholderia sp. 383] gi|77968651|gb|ABB10031.1| Tyrosine recombinase XerC [Burkholderia sp. 383] Length = 306 Score = 113 bits (284), Expect = 3e-23, Method: Composition-based stats. Identities = 46/280 (16%), Positives = 90/280 (32%), Gaps = 32/280 (11%) Query: 75 ISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTP 130 I+ Y + H L+ ++ + D++ + + +T +R V + Sbjct: 6 IAAYLSNLKHVRQLSEHTLRGYTHELDELKKLANGRPLEALTAADMRGAVARAHSGGLSA 65 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQFKSFW 186 S L++ R ++W ++ + NP +V PKR + + +D M + Sbjct: 66 RSISHRLSAWRAFYRWLAQRIEMPANPVAAVRAPKRAKTLPKALSVDDASALMNAPLANT 125 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRA-------------GVQHLQNNIFSIKTQKTGTII 233 +EG + E SGLR ++ G L +++ K Sbjct: 126 TEGIRDHAILELFYSSGLRLAELIGLDVMYTQADGYRSAGWLDLAEAEVTVR-GKGNKER 184 Query: 234 TVELPDGFMKLLAMT--------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284 V + + L F++ +M+ K A AG+ Sbjct: 185 KVPVGRKAIDALNAWLAVRGEFVKHDPHPLFVSVRGNRMSPGVVRERVKRAALTAGIPAN 244 Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 H +R AT + + G +V + YT Sbjct: 245 VHPHVLRHSFATHVLQSSGDLRAVQELLGHASVSATQVYT 284 >gi|300933911|ref|ZP_07149167.1| integrase/recombinase [Corynebacterium resistens DSM 45100] Length = 325 Score = 113 bits (283), Expect = 3e-23, Method: Composition-based stats. Identities = 44/311 (14%), Positives = 92/311 (29%), Gaps = 30/311 (9%) Query: 66 KKPTTLKWLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124 P +L + EY + + + N+ ++ + G + T +H R + Sbjct: 3 STPPSLSRALEEYEEHLQFVVGRSENTITAYRKDLKAALE--GLDSVDEFTLEHARDVLG 60 Query: 125 ---SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 H+ SS + ++S++ + + +V NP ++ PK R E Sbjct: 61 WALDAGHSRSSMARMVSSLKGFGSFLAHKGWVEANPVAALRAPKLDRSLPRVLRTEQATA 120 Query: 182 FKSFW----------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTG 230 ++ E L +G+R ++ + + + K Sbjct: 121 VLDRARDHARINNEDPLATRDWAMAELLFATGMRVAELTGTDIDDVDFTHNVVRVVGKGN 180 Query: 231 TIITVELPDGFMKLLAMTPIGKE------------TFFINNDKQKMNATQFSIWFKAKAT 278 V + ++ F+ ++N Q Sbjct: 181 KQRVVPFGPTARTAVEAWISRRKEVLNPANGQGVAALFLGARGGRINQRQVRSVINELTD 240 Query: 279 KAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 AG + S HG R +AT + GA + G ++ + YT + N Sbjct: 241 AAGAPRMSPHGFRHSAATAILEGGADLRVVQEMLGHASMQTTQIYTHVGTERLKAVFNQA 300 Query: 338 RISSVVDSDDP 348 + + P Sbjct: 301 HPRAESPAQQP 311 >gi|297618199|ref|YP_003703358.1| integrase family protein [Syntrophothermus lipocalidus DSM 12680] gi|297146036|gb|ADI02793.1| integrase family protein [Syntrophothermus lipocalidus DSM 12680] Length = 298 Score = 113 bits (283), Expect = 3e-23, Method: Composition-based stats. Identities = 36/259 (13%), Positives = 87/259 (33%), Gaps = 11/259 (4%) Query: 76 SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD--YRKITTKHIRSGVESRKHTPSSA 133 +Y K+ + + + + + D + R + + + P++ Sbjct: 23 EDYLKTTRARLSVESYMGDLRLFLEWLGGRGEDNPTAVTPLDASEYRRFLADKGYKPATI 82 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT-KEDMQQFKSFWSEG-SQ 191 + + S+R + W V NP + + R T E ++ ++G + Sbjct: 83 NRKIQSLRAFYGWLQEAGIVPDNPFRRTKAVPAQELAPRWLTRPEQAALMRAVRAKGRLR 142 Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVELPDGFMKLLAM 247 +L++GL+ + + + ++ ++ K V L +L Sbjct: 143 DEAMIALMLFAGLKVGELVALEREDVVVRERSGKVVVRQGKGNKRREVPLNATARDILRR 202 Query: 248 TPIGKET--FFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATA 304 T + + +++ Q + A A + + + H +R DAG + Sbjct: 203 WLEENPTGPLWPSQKGGRLSKRQVQKIVEDCAYIAKLKDVTCHKLRHTFCKNLLDAGVSI 262 Query: 305 HELMATYGWKTVDQAETYT 323 ++ A G +D + YT Sbjct: 263 DQVAAMAGHSRLDVTKRYT 281 >gi|298531262|ref|ZP_07018662.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1] gi|298508872|gb|EFI32778.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1] Length = 394 Score = 113 bits (283), Expect = 3e-23, Method: Composition-based stats. Identities = 64/339 (18%), Positives = 125/339 (36%), Gaps = 28/339 (8%) Query: 9 PFVTKERTRHGKIIYYFRK----GHGRRIRLPYPHESTFIPAYMSALTGSTP------KR 58 P T E GK YY R G ++ R+ + A A + R Sbjct: 31 PGFTLEVRSTGKCTYYQRYRDKFGRVKQARIGPTDSISLEDARHRAKQIRSQTIMGYDPR 90 Query: 59 EYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTK 117 E + R P + K + + + + S E + +I+ G+ +IT Sbjct: 91 EQVEKNRNMP-SFKQFVEDKY--IPYIKVHKRSWEFDEKLINQRIMPLWGNMKLSEITRD 147 Query: 118 HIRSG---VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174 ++ H P S +++ ++ +F A R E + +P V R + + R Sbjct: 148 DVQELQSNFLRMGHKPGSVNRYMALVKYIFNLAERWEVIDKSPTRHVSRLEEENHKERYL 207 Query: 175 TKEDMQQFKSFWSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQKTG 230 + ++ ++ S + P + EFL+ +G R S++ Q L ++ I ++ Sbjct: 208 SSDETERLLSELKKCRSPVVPDIIEFLILTGARRSEAVNLPWQELDMAKGVWIIPAERNK 267 Query: 231 TII--TVELPDGFMKLL-AMTPIGKETFFIN-NDKQKMNATQFSIWFKAKATKAGV-NKS 285 + + L G + +L G E F N + M F + KAG+ + Sbjct: 268 AKVKKVIPLSRGALNVLERRKENGCEYVFPNPETGEPM--KHFHGTWDRIRKKAGIPDVR 325 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R A++ ++G + +E+ G + + Y Sbjct: 326 IHDLRHNFASLLINSGRSLYEVQKLLGHADISTTQRYAH 364 >gi|161526251|ref|YP_001581263.1| site-specific tyrosine recombinase XerC [Burkholderia multivorans ATCC 17616] gi|189349035|ref|YP_001944663.1| site-specific tyrosine recombinase XerC [Burkholderia multivorans ATCC 17616] gi|160343680|gb|ABX16766.1| tyrosine recombinase XerC [Burkholderia multivorans ATCC 17616] gi|189333057|dbj|BAG42127.1| tyrosine recombinase [Burkholderia multivorans ATCC 17616] Length = 306 Score = 113 bits (283), Expect = 3e-23, Method: Composition-based stats. Identities = 45/280 (16%), Positives = 90/280 (32%), Gaps = 32/280 (11%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTP 130 I+ Y + + L+ ++ ++ D++ + + + IR V + Sbjct: 6 IAAYLSNLKYVRQLSEHTLRAYTHELDELKKLAAGRPLDTLVAADIRGAVARAHAGGLSA 65 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQFKSFW 186 S L++ R ++W ++ + NP +V PKR + + +D M + Sbjct: 66 RSISHRLSAWRAFYRWLAQRVEMPANPVAAVRAPKRPKTLPKALSVDDASALMDAPLADT 125 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRA-------------GVQHLQNNIFSIKTQKTGTII 233 +EG + E SGLR ++ G L +++ K Sbjct: 126 TEGIRDHAILELFYSSGLRLAELIGLDVAYTQTGDYRSAGWLDLAEAEVTVR-GKGNKER 184 Query: 234 TVELPDGFMKLLAMT--------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284 V + + L F++ +M+ K A AG+ Sbjct: 185 KVPVGRKAIDALNAWLAVRGEFVKHDPHPLFLSVRGNRMSPGVVRERVKRAALAAGIPAH 244 Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 H +R AT + + G +V + YT Sbjct: 245 VHPHVLRHSFATHVLQSSGDLRAVQELLGHASVSATQVYT 284 >gi|317153571|ref|YP_004121619.1| tyrosine recombinase XerC [Desulfovibrio aespoeensis Aspo-2] gi|316943822|gb|ADU62873.1| tyrosine recombinase XerC [Desulfovibrio aespoeensis Aspo-2] Length = 313 Score = 113 bits (283), Expect = 3e-23, Method: Composition-based stats. Identities = 46/265 (17%), Positives = 97/265 (36%), Gaps = 26/265 (9%) Query: 85 GSLAVNSRISFESYFDQI-----IRKSGDFDYRKITTKHIR---SGVESRKHTPSSAIQF 136 + + S+ + +Q K ++T H+R + + + ++ + Sbjct: 25 KGYSEATIRSYGTDLEQFDGFLKRSKRSLEHPERVTRDHVRSFLAEMHRLRLGKATMGRK 84 Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQFKSFWSEGSQP 192 L+S+R F++ +R + +P ++ PK++ + + M+ EG + Sbjct: 85 LSSLRAYFRYLLRHRMITTDPTATIRNPKQEKRHPQVLNVDQAVAMMEAMIEPDPEGLRD 144 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGK 252 E L SGLR S++ + + +++ + T K V L D +K + + Sbjct: 145 LALAEVLYGSGLRISEAVGLDLNDVDSDVIRV-TGKGSKERIVPLSDAAVKRIRRYMEQR 203 Query: 253 ET-----------FFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISAD 299 F +++N Q + AG+ K H +R AT + Sbjct: 204 HALIGDNYAEQALFLSVRSGKRLNRRQANRIVAKLGGLAGLPKDVHPHMLRHSFATHMLE 263 Query: 300 AGATAHELMATYGWKTVDQAETYTK 324 AGA + G + + + YT Sbjct: 264 AGADLRSVQELLGHERLTTTQRYTH 288 >gi|119385844|ref|YP_916899.1| phage integrase family protein [Paracoccus denitrificans PD1222] gi|119376439|gb|ABL71203.1| phage integrase family protein [Paracoccus denitrificans PD1222] Length = 393 Score = 113 bits (283), Expect = 3e-23, Method: Composition-based stats. Identities = 56/317 (17%), Positives = 105/317 (33%), Gaps = 20/317 (6%) Query: 25 FRKGHGRR---IRLPYPHESTFIP----AYMSALTGSTPKREYINSPRKKPTTLKWLISE 77 +R G R I L Y+S + + + P T+K Sbjct: 45 YRAGGRSRRVNIGLHGAMTPEMARTEAMKYLSDVRLGADPAGERDRRKASP-TIKEFSKR 103 Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIR-KSGDFDYRKITTKHIRSGVESRKHTPSSAIQF 136 + ++ +E D I + G IT + +S +H P A + Sbjct: 104 FLSDHVALHCKASTYGEYERSIDLFINPRFGSHRIIDITRADVVGLHQSMRHIPYQANRT 163 Query: 137 LTSMRVLFKWAVRQEYVAI--NPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ--- 191 L + V+F A NPC V+R + + R T +++ + ++ Sbjct: 164 LGVLSVMFTVAHAWGVRTDGVNPCWKVKRYREEKRE-RYLTPDELARLGKVLDCATEEPE 222 Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMTP 249 LL +G R S+ +++ N + + KTG + V + +K+L P Sbjct: 223 AANCIRLLLLTGCRLSEIQTLKWRYVDYRNGLLRLPDSKTGAKL-VPIGKAAIKVLKTIP 281 Query: 250 -IGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHEL 307 I + I + + T ++ +AG++ H +R A+ + G + Sbjct: 282 KIDGNPYVITGRMEGQHLTDMQKPWRRLRKRAGLDDLRIHDLRHSFASDALQLGQDLTMI 341 Query: 308 MATYGWKTVDQAETYTK 324 G V Y Sbjct: 342 GRLLGHTQVQTTARYAH 358 >gi|50843000|ref|YP_056227.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes KPA171202] gi|50840602|gb|AAT83269.1| integrase/recombinase [Propionibacterium acnes KPA171202] gi|313763561|gb|EFS34925.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL013PA1] gi|313793954|gb|EFS41978.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL110PA1] gi|313801341|gb|EFS42592.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL110PA2] gi|313816741|gb|EFS54455.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL059PA1] gi|313829428|gb|EFS67142.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL063PA2] gi|313839938|gb|EFS77652.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL086PA1] gi|314914715|gb|EFS78546.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL005PA4] gi|314919323|gb|EFS83154.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL050PA1] gi|314920767|gb|EFS84598.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL050PA3] gi|314930647|gb|EFS94478.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL067PA1] gi|314954397|gb|EFS98803.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL027PA1] gi|314957518|gb|EFT01621.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL002PA1] gi|314963694|gb|EFT07794.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL082PA1] gi|314968478|gb|EFT12576.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL037PA1] gi|315079544|gb|EFT51537.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL053PA2] gi|315099188|gb|EFT71164.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL059PA2] gi|315100329|gb|EFT72305.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL046PA1] gi|315106859|gb|EFT78835.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL030PA1] gi|315108987|gb|EFT80963.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL030PA2] gi|327452023|gb|EGE98677.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL092PA1] gi|327454940|gb|EGF01595.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL087PA3] gi|327457774|gb|EGF04429.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL083PA2] gi|328755227|gb|EGF68843.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL087PA1] gi|328758294|gb|EGF71910.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL025PA2] Length = 315 Score = 113 bits (283), Expect = 3e-23, Method: Composition-based stats. Identities = 43/284 (15%), Positives = 96/284 (33%), Gaps = 27/284 (9%) Query: 68 PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSGVE 124 P +L + ++ + N+ + + + GD +I T +R+ + Sbjct: 15 PMSLTVPVEDFCGHLSALRRSPNTIRGYRADLIDLMGHAHSHGDDTLGRIGTSQVRAWLA 74 Query: 125 SRKHTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI---------R 172 + +SA + ++ RV F+WA + ++ +P ++ K Sbjct: 75 DTRVAGASAATMQRRWSAARVFFRWAANEGLISADPTTALNSAKVPKRLPATLGVDQARH 134 Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGT 231 + Q G++ E L GLR + C + + + ++K T K Sbjct: 135 ILDEAVAQARHDESPHGARDAAILEVLYGGGLRVGELCGLDLGDVDRSRRTVKVTGKGDK 194 Query: 232 IITVELPDGFMKLLAMT---------PIGKETFFINNDKQKMNATQFSIWFK--AKATKA 280 TV + ++ + P + F+ ++++ +A Sbjct: 195 ERTVPMGAPALRAIDTWLPRREEWVGPHSGQALFLGARGRRIDQRVVRRVVHTDLRAEPD 254 Query: 281 GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 + HG+R AT + GA + G +++ + YT Sbjct: 255 SPDLGPHGLRHAMATHLLEGGADLRTVQDILGHESLATTQIYTH 298 >gi|149908948|ref|ZP_01897607.1| site-specific recombinase, phage integrase family [Moritella sp. PE36] gi|149807959|gb|EDM67902.1| site-specific recombinase, phage integrase family [Moritella sp. PE36] Length = 288 Score = 113 bits (283), Expect = 3e-23, Method: Composition-based stats. Identities = 46/267 (17%), Positives = 95/267 (35%), Gaps = 21/267 (7%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR---SGVESRKH 128 + L+ ++ + + +R S+ +Q+ + G I+ K + + KH Sbjct: 2 RQLLQQFNEEITLRGYSERTRNSYRYAINQLYKYFGQ-PLDTISDKQLEMYFRYLNLEKH 60 Query: 129 TPSSAIQF-LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + ++ L + LF+ + + + +SV PKRK + + T++D+ + Sbjct: 61 HCRATLKLHLNGIHFLFEHVLHRSF-----TISVCLPKRKEKLPQLLTQQDISAVIYYCK 115 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLL 245 R GLR S+ V + +K K V + ++ + Sbjct: 116 TNKH-RAMVALCYGCGLRVSELTHVKVSDIDGQRQLLKVCQGKGAKDRLVIISPVLLQFM 174 Query: 246 AM--TPIGKETFFINNDKQ----KMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATIS 297 +T+ + ++ + F A KAG+ S H +R AT Sbjct: 175 RQYWQQYHPDTWLFGSRWHGVIYPIHESTFRKGLTCAAKKAGITKPCSPHSLRHAYATHQ 234 Query: 298 ADAGATAHELMATYGWKTVDQAETYTK 324 AG ++L G +++ E Y Sbjct: 235 LQAGMPLNQLQQQLGHQSIQSTERYLH 261 >gi|313884807|ref|ZP_07818559.1| putative tyrosine recombinase XerC [Eremococcus coleocola ACS-139-V-Col8] gi|312619498|gb|EFR30935.1| putative tyrosine recombinase XerC [Eremococcus coleocola ACS-139-V-Col8] Length = 304 Score = 113 bits (283), Expect = 4e-23, Method: Composition-based stats. Identities = 43/265 (16%), Positives = 92/265 (34%), Gaps = 26/265 (9%) Query: 85 GSLAVNSRISFESYFD---QIIRKSGDFDYRKI---TTKHIRSGVESRKHTPSSAIQFLT 138 + + +++ + SG+ + I + + + ++ + +S + L+ Sbjct: 16 KRYSPLTAQAYQRDLKEFAHFLASSGNDQVQSISYYDIRLFIAFLNEKRLSRTSIARKLS 75 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF-----KSFWSEGSQPR 193 ++R FK+ + + NP V +K + +++MQ +S + + Sbjct: 76 TLRSFFKFMQVETKLDQNPMDLVNYQVKKQRLPDFFYEDEMQALLKAAAESEHPLALRNQ 135 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDG-----------F 241 E L SGLR S+ + + ++ G V + D Sbjct: 136 AILEVLYASGLRVSECRLLELGQVDFLAQVLRVHGKGNKERIVPMSDSASQTMQDYIKYL 195 Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISAD 299 L +T K+ F++N + + Q S + +N S H +R AT + Sbjct: 196 RPKLDVTGQAKQ-VFLSNKGKTLTTRQVSQILNEIVAEGALNLSIHPHKLRHTFATHLLN 254 Query: 300 AGATAHELMATYGWKTVDQAETYTK 324 GA + G + + YT Sbjct: 255 NGADLRSVQEMLGHADLSSTQIYTH 279 >gi|289672837|ref|ZP_06493727.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv. syringae FF5] gi|330900733|gb|EGH32152.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv. japonica str. M301072PT] gi|330941149|gb|EGH44028.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv. pisi str. 1704B] gi|330976605|gb|EGH76649.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 299 Score = 113 bits (283), Expect = 4e-23, Method: Composition-based stats. Identities = 37/259 (14%), Positives = 93/259 (35%), Gaps = 19/259 (7%) Query: 85 GSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIR---SGVESRKHTPSSAIQFLT 138 ++ ++ ++ ++ +K+ + + +H+R + + + S + L+ Sbjct: 16 RQVSPHTLEAYRRDLGKVLAYCQKAQLSSWSDLDIQHLRSFTARQHQQGQSSRSLARMLS 75 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRL 194 ++R +K+ R+ +P + PK + + + Q E + + Sbjct: 76 AVRGFYKYLNREGICQHDPANGLSPPKGERRLPKTLDTDRTAQLLDGGVEDDFLAHRDQA 135 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV--------ELPDGFMKLLA 246 E L SGLR S+ + L ++ G+ V + + ++ L A Sbjct: 136 ILELLYSSGLRLSELTGLNLDQLDLRDGLVQVLGKGSKTRVLPVGSKARQALEVWLPLRA 195 Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAK-ATKAGVNKSAHGVRKFSATISADAGATAH 305 +T + F++ +++ + KA + G N H +R A+ ++ Sbjct: 196 LTHPQDDAVFVSQQGKRLGPRAIQVRLKAAGERELGQNLHPHMLRHSFASHLLESSQDLR 255 Query: 306 ELMATYGWKTVDQAETYTK 324 + G + + YT Sbjct: 256 AVQELLGHADIKTTQIYTH 274 >gi|260767555|ref|ZP_05876491.1| tyrosine recombinase XerC [Vibrio furnissii CIP 102972] gi|260617455|gb|EEX42638.1| tyrosine recombinase XerC [Vibrio furnissii CIP 102972] gi|315178748|gb|ADT85662.1| site-specific tyrosine recombinase [Vibrio furnissii NCTC 11218] Length = 309 Score = 113 bits (283), Expect = 4e-23, Method: Composition-based stats. Identities = 39/287 (13%), Positives = 94/287 (32%), Gaps = 25/287 (8%) Query: 61 INSPRKKPTTLKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRK------ 113 I+S P +L + + + L+++++ +++ + + + Sbjct: 2 IDSATPLPDSLGRPLERFYEYLRSEKGLSLHTQRNYKQQLTTMAQHLNHMGLNQWQQVDA 61 Query: 114 --ITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171 + + + K SS L+S+R F + + + + NP V P++K Sbjct: 62 GWVRQLASKGMRDGMKA--SSLATRLSSLRSFFDFLILRGELNANPAKGVSAPRKKRPLP 119 Query: 172 RPWTKEDMQQFKSF---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228 + ++M Q + R E + +GLR ++ V+ + + I+ Sbjct: 120 KNLDVDEMAQLLEVNEDDPLSIRDRAMMELMYGAGLRLAELVAINVRDVSLSAGEIRVIG 179 Query: 229 TGTIITV---------ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK 279 G + ++ + FI+ +++ K Sbjct: 180 KGNKERKAPFAGQAKEWVGKWLKVRSSLLKGDEPALFISQLGARISHRNVQKRMAEWGHK 239 Query: 280 AGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 V + S H +R AT ++ + G + + + YT Sbjct: 240 QSVASHISPHKLRHSFATHMLESSNNLRAVQELLGHENISTTQIYTH 286 >gi|116872710|ref|YP_849491.1| integrase/recombinase XerC [Listeria welshimeri serovar 6b str. SLCC5334] gi|123463735|sp|A0AI80|XERC_LISW6 RecName: Full=Tyrosine recombinase xerC gi|116741588|emb|CAK20712.1| integrase/recombinase XerC [Listeria welshimeri serovar 6b str. SLCC5334] Length = 300 Score = 113 bits (283), Expect = 4e-23, Method: Composition-based stats. Identities = 40/272 (14%), Positives = 99/272 (36%), Gaps = 27/272 (9%) Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK------ITTKHIRSGVESRKHTPS 131 Y S + +VN+ ++E+ R + + + + + ++ + + + Sbjct: 14 YLHSER--NYSVNTSTAYENDILDFRRFLNEQAISEYQQVTFLDVRIYLTELKQKSFSRT 71 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ-----FKSFW 186 + + ++S+R + + +R+ ++ NP V K + + + E+M+ ++ Sbjct: 72 TVARKISSLRSFYTFLLRENVISENPFTYVSHAKNQLRLPKFFYSEEMEALFQVVYEDNE 131 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVE--------L 237 + + R+ E L +G+R S+ + L + +I K V + Sbjct: 132 TLTLRDRVLLEVLYGTGIRVSECAGILLSDLDTSYQAILIRGKGNKERYVPFGAYAEDAI 191 Query: 238 PDGFM---KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKF 292 D +L+ ++ IN+ + +KA + + H +R Sbjct: 192 TDYLSSRTELMIRFKKEHDSLLINHYGDPLTTRGIRYCLTKIISKASLTRKIHPHMLRHT 251 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTK 324 AT + GA + G ++ + YT Sbjct: 252 FATDLLNNGADMRTVQELLGHASLSSTQIYTH 283 >gi|289596337|ref|YP_003483033.1| integrase family protein [Aciduliprofundum boonei T469] gi|289534124|gb|ADD08471.1| integrase family protein [Aciduliprofundum boonei T469] Length = 284 Score = 113 bits (283), Expect = 4e-23, Method: Composition-based stats. Identities = 47/265 (17%), Positives = 95/265 (35%), Gaps = 19/265 (7%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE----SRKHTP 130 + ++++ + N+ + + ++R IT + RK++ Sbjct: 13 LEKFKEYLRGEKRSENTIKEYAHFISDMLRYF-HKRAEDITPGDLNKYKMYLSTKRKYSK 71 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 +S ++R FK+ ++ ++ PKR + + +++++++ SE Sbjct: 72 NSLYLATKAIRSYFKY------KNLDTAKNLSSPKRPRQMPKYLSEDEVKRLIEASSENP 125 Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPD----GFMKL 244 + L YSGLR S+ C ++ + I + + K V + Sbjct: 126 RDYAIISLLAYSGLRVSELCNLKIEDVDFNERIVYVHSGKGDKDRIVVVSPRVIEALQNY 185 Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302 L E F + K++ Q K A KAG+ K + H +R AT G Sbjct: 186 LYTREDDMEYLFASQKSNKISRVQVFRIVKKYAEKAGIKKEVTPHVLRHTLATTLLRRGV 245 Query: 303 TAHELMATYGWKTVDQAETYTKGAD 327 + G +V + YT D Sbjct: 246 DIRFIQQFLGHSSVATTQIYTHVDD 270 >gi|289426394|ref|ZP_06428137.1| phage integrase, N-terminal SAM domain protein [Propionibacterium acnes SK187] gi|289153122|gb|EFD01840.1| phage integrase, N-terminal SAM domain protein [Propionibacterium acnes SK187] gi|313773500|gb|EFS39466.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL074PA1] gi|313807979|gb|EFS46460.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL087PA2] gi|313811552|gb|EFS49266.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL083PA1] gi|313819548|gb|EFS57262.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL046PA2] gi|313822129|gb|EFS59843.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL036PA1] gi|313823637|gb|EFS61351.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL036PA2] gi|313825961|gb|EFS63675.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL063PA1] gi|313831292|gb|EFS69006.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL007PA1] gi|313834903|gb|EFS72617.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL056PA1] gi|314924714|gb|EFS88545.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL036PA3] gi|314962115|gb|EFT06216.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL002PA2] gi|314974168|gb|EFT18264.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL053PA1] gi|314976542|gb|EFT20637.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL045PA1] gi|314979003|gb|EFT23097.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL072PA2] gi|314984361|gb|EFT28453.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL005PA1] gi|314986551|gb|EFT30643.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL005PA2] gi|314990910|gb|EFT35001.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL005PA3] gi|315081228|gb|EFT53204.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL078PA1] gi|315083594|gb|EFT55570.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL027PA2] gi|315087111|gb|EFT59087.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL002PA3] gi|315095307|gb|EFT67283.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL038PA1] gi|327328430|gb|EGE70192.1| putative tyrosine recombinase XerC [Propionibacterium acnes HL096PA2] gi|327329704|gb|EGE71460.1| putative tyrosine recombinase XerC [Propionibacterium acnes HL096PA3] gi|327444217|gb|EGE90871.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL043PA2] gi|327444904|gb|EGE91558.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL043PA1] gi|327446389|gb|EGE93043.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL013PA2] gi|328752379|gb|EGF65995.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL020PA1] gi|328760018|gb|EGF73600.1| putative tyrosine recombinase XerC [Propionibacterium acnes HL099PA1] Length = 315 Score = 113 bits (283), Expect = 4e-23, Method: Composition-based stats. Identities = 43/284 (15%), Positives = 96/284 (33%), Gaps = 27/284 (9%) Query: 68 PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSGVE 124 P +L + ++ + N+ + + + GD +I T +R+ + Sbjct: 15 PMSLTVPVEDFCGHLSALRRSPNTIRGYRADLIDLMGHAHSHGDDTLGRIGTSQVRAWLA 74 Query: 125 SRKHTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI---------R 172 + +SA + ++ RV F+WA + ++ +P ++ K Sbjct: 75 DTRVAGASAATMQRRWSAARVFFRWAANEGLISADPTTALNSAKVPKRLPATLGVDQARH 134 Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGT 231 + Q G++ E L GLR + C + + + ++K T K Sbjct: 135 ILDEAVAQARHDESPHGARDAAILEVLYGGGLRVGELCGLDLGDVDRSRRTVKVTGKGDK 194 Query: 232 IITVELPDGFMKLLAMT---------PIGKETFFINNDKQKMNATQFSIWFK--AKATKA 280 TV + ++ + P + F+ ++++ +A Sbjct: 195 ERTVPMGAPALRAIDTWLPRREEWVGPHSGQALFLGARGRRIDQRVVRRVVHTHLRAEPD 254 Query: 281 GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 + HG+R AT + GA + G +++ + YT Sbjct: 255 SPDLGPHGLRHAMATHLLEGGADLRTVQDILGHESLATTQIYTH 298 >gi|56696516|ref|YP_166873.1| tyrosine recombinase XerD [Ruegeria pomeroyi DSS-3] gi|56678253|gb|AAV94919.1| tyrosine recombinase XerD [Ruegeria pomeroyi DSS-3] Length = 319 Score = 113 bits (283), Expect = 4e-23, Method: Composition-based stats. Identities = 43/272 (15%), Positives = 90/272 (33%), Gaps = 32/272 (11%) Query: 88 AVNSRISFESYF----DQIIRKSGDFD-YRKITTKHIRSGVESRKHTPSSAIQFLTSMRV 142 A N+ +++ D + R+ + + T + +++ ++ + L++++ Sbjct: 26 ANNTLLAYGRDLKDFTDWLERRGATLNGAERDTVEAYLVDCDAQGLARATRARRLSAIKQ 85 Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-------SEGSQPRLA 195 L+++A + + A NP + ++ P R + ++ + ++ + Sbjct: 86 LYRFAFDEGWRADNPAIQIKGPGRLKSLPKTLEVIEVDRLLEAARQTGRTSADRLRNTCL 145 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFMKLLAMT------ 248 E L +G+R S+ + + + K G V L LA Sbjct: 146 MELLYATGMRVSELVSLPATAARGDPRMLLVRGKGGKERMVPLSPPARAALAAWLTVRDA 205 Query: 249 ---------PIGKETFFINNDK-QKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSAT 295 F + K + +F + K A GV + H +R AT Sbjct: 206 AEEDGARRGIARSPHLFPSRGKSGHLTRHRFYLLIKELAVAGGVSPDTVTPHTLRHAFAT 265 Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGAD 327 GA + G V E YT D Sbjct: 266 HLLANGADLRTIQTLLGHADVSTTEIYTHVLD 297 >gi|327404137|ref|YP_004344975.1| Tyrosine recombinase xerC [Fluviicola taffensis DSM 16823] gi|327319645|gb|AEA44137.1| Tyrosine recombinase xerC [Fluviicola taffensis DSM 16823] Length = 293 Score = 113 bits (283), Expect = 4e-23, Method: Composition-based stats. Identities = 42/263 (15%), Positives = 99/263 (37%), Gaps = 27/263 (10%) Query: 85 GSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSG---VESRKHTPSSAIQFLT 138 + ++ +++E +Q ++R++ + +R+ + + + + ++ Sbjct: 15 KRYSKHTILAYEEDLNQFVSFSELKESVEWREVNYQLVRAWVVGLLESGQSNRTVSRKIS 74 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ--QFKSFWS---EGSQPR 193 +R FKW + + + NP L + PK + + + ++ + + +S EG + R Sbjct: 75 CLRSFFKWLINEGKIGENPMLRIRGPKVEKRLPQFVKQTEIDGARIEGLFSSNFEGVRDR 134 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM------ 247 L FE +G+R S+ + + + + K + + +++ Sbjct: 135 LMFELFYQTGIRLSELIELKNKDVSSVSIKV-LGKRNKERIIPIGQELHEIILAYQSIKP 193 Query: 248 -TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-----NKSAHGVRKFSATISADAG 301 P + F+ D +K++ ++ T G KS H +R AT + G Sbjct: 194 GGPDSQILLFVKKDGRKLSPK---FVYRKINTYLGSVTNVQKKSPHILRHTFATHMLNNG 250 Query: 302 ATAHELMATYGWKTVDQAETYTK 324 A L G + + YT Sbjct: 251 AGLETLKELLGHANLSATQVYTH 273 >gi|257896182|ref|ZP_05675835.1| phage integrase [Enterococcus faecium Com12] gi|293377182|ref|ZP_06623390.1| tyrosine recombinase XerC [Enterococcus faecium PC4.1] gi|257832747|gb|EEV59168.1| phage integrase [Enterococcus faecium Com12] gi|292644202|gb|EFF62304.1| tyrosine recombinase XerC [Enterococcus faecium PC4.1] Length = 301 Score = 113 bits (283), Expect = 4e-23, Method: Composition-based stats. Identities = 47/281 (16%), Positives = 98/281 (34%), Gaps = 34/281 (12%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFE---SYFDQIIRKSGDFDYRKITTKHIRSGVESRK 127 L++LI E + ++ ++E +F + +SGD D K +R + + Sbjct: 11 LRYLIVE-------RGYSEKTKEAYEEDILHFKHFLEESGDADLLKAEYFTVRVYLSALA 63 Query: 128 H-----TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 + +S + + S+R +++ +++E + NP V K+ R + + +MQ Sbjct: 64 DHRPSYSRNSISRKIASLRSFYQYLLKEEVIKENPFSYVHLKKKNLRLPRFFYENEMQAL 123 Query: 183 KSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVEL 237 + R E L SG+R S+ V + ++ + K L Sbjct: 124 FDSVAGDSPLDLRNRALLEVLYGSGIRLSECSNLLVSDIDFDSEVMLIHGKGNKERYAPL 183 Query: 238 ------------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS 285 +G L+ + F+N+ + + T K+ ++ Sbjct: 184 GSFAQDALQEYFTEGRQVLMTKYHEEHDIVFVNHHGKPITPTGIEYVLNQIIKKSSLDSD 243 Query: 286 --AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R AT + GA + G + + Y Sbjct: 244 IHPHMLRHTFATHLLNNGADLRTVQELLGHANLSTTQIYAH 284 >gi|88855485|ref|ZP_01130149.1| tyrosine recombinase [marine actinobacterium PHSC20C1] gi|88815392|gb|EAR25250.1| tyrosine recombinase [marine actinobacterium PHSC20C1] Length = 311 Score = 113 bits (283), Expect = 4e-23, Method: Composition-based stats. Identities = 44/265 (16%), Positives = 87/265 (32%), Gaps = 26/265 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRK---ITTKHIRSGVESRKHTP------SSAIQ 135 L+ N+ ++ D + + D + IT + + S + P SS + Sbjct: 28 RGLSQNTLAAYRRDLDSYLGFLSERDLAEPSAITADDVAAFAHSLRVDPERPLAASSVAR 87 Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQ 191 L+++R L + V + V+ + V PK+ + T E M + ++ + Sbjct: 88 MLSTVRGLHTFFVDESLVSDDVAHKVAIPKQTMRLPKAITIEQMSSVLASFAGDDVVSLR 147 Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL------- 244 E L +G R S+ V + + K V + Sbjct: 148 NTALLELLYATGARVSEVTALNVDDMIDGDVVRLLGKGNKQRIVPVGSFAQAAIEKYLVR 207 Query: 245 ----LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK--AGVNKSAHGVRKFSATISA 298 L+ F+ +++ + ++ A + G++ S H R AT Sbjct: 208 SRPVLSAKGTATPALFLGARGARLSRQNVWLIIQSAAERVNLGLDISPHTFRHSFATHLL 267 Query: 299 DAGATAHELMATYGWKTVDQAETYT 323 GA + G +V + YT Sbjct: 268 SGGADVRVVQELLGHSSVATTQIYT 292 >gi|217964580|ref|YP_002350258.1| tyrosine recombinase XerC [Listeria monocytogenes HCC23] gi|254799346|sp|B8DG54|XERC_LISMH RecName: Full=Tyrosine recombinase xerC gi|217333850|gb|ACK39644.1| tyrosine recombinase XerC [Listeria monocytogenes HCC23] gi|307570856|emb|CAR84035.1| tyrosine integrase/recombinase [Listeria monocytogenes L99] Length = 300 Score = 113 bits (283), Expect = 4e-23, Method: Composition-based stats. Identities = 40/283 (14%), Positives = 99/283 (34%), Gaps = 27/283 (9%) Query: 67 KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK------ITTKHIR 120 + L+ +Y S + +VN+ ++E+ R + + + Sbjct: 3 QEGKLEQQFLDYLHSER--NYSVNTSTAYENDLLDFRRFLNEQAIETYQQVTFLDVRIYL 60 Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 + ++ + + ++ + ++S+R + + +R+ +A NP V K + + + E+M+ Sbjct: 61 TELKQKSFSRTTVARKISSLRSFYTFLLRENVIAENPFTYVSHAKNQLRLPKFFYSEEME 120 Query: 181 Q-----FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIIT 234 ++ + + R+ E L +G+R S+ + L + +I K Sbjct: 121 ALFQVVYEDNETLTLRDRVLLEVLYGTGIRVSECAGILLPDLDTSYQAILIRGKGNKERY 180 Query: 235 VEL-----------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283 V +L+ + +N+ + +KA + Sbjct: 181 VPFGVYAEDAITDYLPKRTELMTRYKKSHDALLVNHYGDPLTTRGIRYCLTKIISKASLT 240 Query: 284 KS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 + H +R AT + GA + G ++ + YT Sbjct: 241 RKIHPHMLRHTFATDLLNNGADMRTVQELLGHASLASTQIYTH 283 >gi|73667280|ref|YP_303296.1| Phage integrase, N-terminal SAM- like [Ehrlichia canis str. Jake] gi|72394421|gb|AAZ68698.1| Phage integrase, N-terminal SAM- like protein [Ehrlichia canis str. Jake] Length = 310 Score = 113 bits (283), Expect = 4e-23, Method: Composition-based stats. Identities = 44/268 (16%), Positives = 91/268 (33%), Gaps = 28/268 (10%) Query: 85 GSLAVNSRISFESYFD--------QIIRKSGDFDYRKITTKHIRSGVESRKHT---PSSA 133 +VN+ ++ + ++R D I +R R + Sbjct: 21 RRYSVNTVDAYVRDVNKFLGFLYTYVLRPVTLEDVVNIKVADLRKWFTFRYQANVEAITN 80 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS--- 190 + L++++ F++ R V + RPK K+ + + ++ +++S Sbjct: 81 ARSLSALKNFFRYLSRTYDVDNQSIFCLSRPKLKSALPKTLGQFHIENIVNYYSLHDNWV 140 Query: 191 --QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP---DGFMKLL 245 + L GLR S++ Q ++ I + I LP + + + Sbjct: 141 FKRDFAIIMLLYGCGLRISEAVGLKFQDVRTGEILITGKGNKERILPILPVVRNSLDEYI 200 Query: 246 AMTP-------IGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATI 296 P +G E F+ + +K+ T F+ + K G+ + H R AT Sbjct: 201 KFCPYHTKLNSVGNEYIFVGVNGKKLGRTYFANRIQKICEKIGLPDTTTPHVFRHSFATH 260 Query: 297 SADAGATAHELMATYGWKTVDQAETYTK 324 +GA + G + + YT Sbjct: 261 LLLSGADIRSIQELLGHANLSTTQIYTH 288 >gi|83859702|ref|ZP_00953222.1| integrase/recombinase XerD [Oceanicaulis alexandrii HTCC2633] gi|83852061|gb|EAP89915.1| integrase/recombinase XerD [Oceanicaulis alexandrii HTCC2633] Length = 311 Score = 113 bits (283), Expect = 4e-23, Method: Composition-based stats. Identities = 45/272 (16%), Positives = 93/272 (34%), Gaps = 32/272 (11%) Query: 85 GSLAVNSRISFESYFDQIIRKSGD-----FDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139 A N+ ++ + ++ G + + S + S +P++A + L++ Sbjct: 17 RGAARNTLDAYRRDLEDAAQRLGAHGTGLESAQTADVERFLSDLASDGLSPATAARRLSA 76 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS-----EGSQPRL 194 ++ +++ +++ A +P ++ PK+ + ++ ++ +G + R Sbjct: 77 LKRYYRFLLKEGLRADDPAKTLSGPKKPRPLPKVLSEGQVETLFDAADRIEGADGFRLRA 136 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQN-NIFSIKTQKTGTIITVELPDG------------- 240 E L GLR S+ + + T K G V L D Sbjct: 137 LLELLYAGGLRVSELVTLPLAAFARSERCLVVTGKGGKERLVPLTDSAIRAVEAYKAVRA 196 Query: 241 --FMKLLAMTPIGKETFFI---NNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKF 292 A+T + + +F+ KA + AG++ S H +R Sbjct: 197 DHLPSRAAVTHAVASRYLFPSRTARDGHLTRERFAQLLKALSLAAGLDPQQVSPHVMRHA 256 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTK 324 AT GA + + G V E YT Sbjct: 257 FATHLLANGADLRSVQSLLGHADVSTTEIYTH 288 >gi|258516839|ref|YP_003193061.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771] gi|257780544|gb|ACV64438.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771] Length = 381 Score = 113 bits (283), Expect = 4e-23, Method: Composition-based stats. Identities = 53/362 (14%), Positives = 115/362 (31%), Gaps = 58/362 (16%) Query: 15 RTRHGKII---YYFRKGHGRRIRLPYPHESTFI--PAYMSALTGSTPKREYINSPRKKPT 69 + GK Y +G R+ + ES F + L + E K Sbjct: 5 IVKRGKTYSIVYDINQGGKRKQK----WESGFKTKKEAEAILAQRINEIEKGTYINPKKD 60 Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITT--------KHIR 120 TL+ + + + L+ ++ +E +I G+ K+ K + Sbjct: 61 TLEDYLIRWFDTHK-ADLSPSTARRYEGIIKQHLIPSLGNIPLAKLQPLQIQEFLSKELE 119 Query: 121 SGVESRKHT------PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174 G + K T +S + AV + ++ NP V+ PK + + + Sbjct: 120 GGRQDNKKTVGAGLSAASVNYEYRVLHKALNQAVDWQLISRNPADLVKVPKPEKKDMVVL 179 Query: 175 TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKT------ 226 +++D+ + + + + +Y+G+R + + + + I S++ Sbjct: 180 SEQDIARLLNEIKDN-YLYIPTFLAIYTGMRLGEVLGSTWKDIDLNRGILSVRQASCQVK 238 Query: 227 -----------QKTGTIITVELP--DGFMKLLAMTPI----------GKETFFINNDKQK 263 K+ I + + D + Sbjct: 239 ADDPEFKAPKTAKSKRNIDISQTVVKTLREHKKTQTKWKLVAGSNWQDNNLVCALQDGRP 298 Query: 264 MNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETY 322 +N S +F+ A++ G+ S H +R A++ AG + G T+ + Y Sbjct: 299 INPPSLSSYFRRVASRIGLFVSFHALRHTHASLLLKAGIQPKIVQERLGHSTIAVTMDIY 358 Query: 323 TK 324 + Sbjct: 359 SH 360 >gi|297182869|gb|ADI19020.1| site-specific recombinase xerd [uncultured alpha proteobacterium HF0070_05I22] Length = 314 Score = 113 bits (283), Expect = 4e-23, Method: Composition-based stats. Identities = 44/267 (16%), Positives = 86/267 (32%), Gaps = 28/267 (10%) Query: 85 GSLAVNSRISFESYFDQIIRKSGD-----FDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139 +++ N+ ++ + D + + S R + S + L++ Sbjct: 27 RAVSANTLAAYRRDLADTSQLLHASKTTLTDCNADDLRQVISLWHQRGLSARSVARRLSA 86 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW------SEGSQPR 193 +R WAV + NPC ++ P + +++++ + + + + Sbjct: 87 LRQFMGWAVDDQIRTDNPCRWIDNPSLPALLPKSLSEDEVMKLLAAANAMQPPALSCRAV 146 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDGFMKLLAMTPIGK 252 E L +GLR S+ V + SI K G V L + A + Sbjct: 147 AMLEILYATGLRVSELVHLQVSQFRRQPDSILVAGKGGRERLVPLGLAAKRAAADWLELR 206 Query: 253 ETFF-------------INNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATI 296 + F M +F+ K A A ++ + H +R AT Sbjct: 207 DATFGYLLSDYMFPGVSSTAAGGAMTRHEFAQLLKTIAVAAQIDPRRVTPHKIRHSFATH 266 Query: 297 SADAGATAHELMATYGWKTVDQAETYT 323 + GA L G + + YT Sbjct: 267 MLNRGADLRSLQNMLGHADIATTQIYT 293 >gi|187929673|ref|YP_001900160.1| integrase family protein [Ralstonia pickettii 12J] gi|221067672|ref|ZP_03543777.1| integrase family protein [Comamonas testosteroni KF-1] gi|187726563|gb|ACD27728.1| integrase family protein [Ralstonia pickettii 12J] gi|220712695|gb|EED68063.1| integrase family protein [Comamonas testosteroni KF-1] Length = 399 Score = 113 bits (283), Expect = 4e-23, Method: Composition-based stats. Identities = 56/320 (17%), Positives = 115/320 (35%), Gaps = 26/320 (8%) Query: 45 PAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-II 103 +++ + + R P T+K L +++ + +++ +++ D+ I+ Sbjct: 75 QEWLAEVRRGGDPSAAKAAARSAP-TVKELCTKFMEDYSKQRNKPSTQRGYQAVIDRCIV 133 Query: 104 RKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVA--INPCLSV 161 G + + + + ++ H P+ A + + MR +F A + NPC V Sbjct: 134 PMLGRLKVQDVKRPDVATAMKKMAHKPAEANRAFSVMRKMFNLAEVWGHRPDGTNPCRHV 193 Query: 162 ERPKRKTEGIRPWTKEDM----QQFKSFWSEGSQPR---LAFEFLLYSGLRCSDSCRAGV 214 + + EDM ++ + +EG + LA R S+ Sbjct: 194 PM-YPNGKATHLISDEDMGKLFRRLEHIEAEGLENYVIPLAIRLQFEFAGRRSEIVTLRW 252 Query: 215 Q--HLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFI----NNDKQKM-NAT 267 L N KTG + + + +LL+ P + T ++ ++ + + Sbjct: 253 DWVDLDNRRVVWPDSKTGGMSK-PMSEEAYRLLSTAPRQEGTPYVLPSPSHPGKHLTTGE 311 Query: 268 QFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 + W +A + HG+R SAT A++G MA KTV Y D Sbjct: 312 YYGGWSRALKAAGATHVGTHGIRHRSATDIANSGIPVKVGMALTAHKTVAMFMRYVHTED 371 Query: 328 RIRLGIKNSRRISSVVDSDD 347 R+ + +V + Sbjct: 372 ------DPVRKAAELVANRR 385 >gi|126173818|ref|YP_001049967.1| phage integrase family protein [Shewanella baltica OS155] gi|125997023|gb|ABN61098.1| phage integrase family protein [Shewanella baltica OS155] Length = 376 Score = 113 bits (283), Expect = 4e-23, Method: Composition-based stats. Identities = 59/319 (18%), Positives = 108/319 (33%), Gaps = 17/319 (5%) Query: 23 YYFR---KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYR 79 YY R +G + + ++ T A + A R + TL E+ Sbjct: 43 YYVRFQYQGLRQLHVIGNANDITLDDARLEARKQIDALRYGVVREPAPSLTLCAFAEEFF 102 Query: 80 KSAHWGS-LAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFL 137 + ++ ++ + F I GD +T +HI + + A + L Sbjct: 103 --PRYARHWKPSTLLNSQRGFTRHIAPVLGDVPLAALTRQHIEQWFDGMHASKGMANRLL 160 Query: 138 TSMRVLFKWAVRQEY--VAINPCLSVERPKRKTEGIRPWTKEDMQ----QFKSFWSEGSQ 191 + V+ + A EY NPC +R K T R ++E+++ S Sbjct: 161 PLLSVMMQQAEVYEYRPAQSNPCKGFKRYK-STHSERYLSEEELKRLWLALDSHEKASPV 219 Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIG 251 + L+ +G RC++ C + + + KTG TV L +LL+ P Sbjct: 220 AVMVLRLLILTGCRCNEVCSVKWADYRQGHWYLPDSKTGAK-TVFLSSFARELLSDWPQV 278 Query: 252 KETFFINND-KQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMA 309 E F + Q +++ + + H +R A+I+ + Sbjct: 279 SEHIFWHQSPSQPFTPACLDRFWRPFRETIHLNDVRIHDLRHTYASIAVKYNINILTIGR 338 Query: 310 TYGWKTVDQAETYTKGADR 328 G + YT A R Sbjct: 339 LLGHALPETTLKYTHLAKR 357 >gi|299820311|gb|ADJ54321.1| integrase [archaeon enrichment culture clone 1(2010)] Length = 282 Score = 113 bits (283), Expect = 4e-23, Method: Composition-based stats. Identities = 52/271 (19%), Positives = 95/271 (35%), Gaps = 19/271 (7%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKHTPS 131 + Y S + + ++ S + I G R R +E K Sbjct: 9 LEGYLGSLKARGRSERTLKTYRSILTRFIDYLAVNGLTPDRVTEQDIDRFMLELSKMGWD 68 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191 T + + +Y+ N ++ PKR + T+E++ + + Sbjct: 69 Q-NSLFTVAVAVRSFL---KYLGRN--VNYPLPKRPKMLPKYLTREELTRLLGACQD-DY 121 Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFMKLLAMTPI 250 +L LL +G+R S+ V + + SI+ G V D + LL Sbjct: 122 EKLIIGLLL-TGVRVSELVNIRVSDIDIDKRSIRVVGKGYKERVVFFADWLVPLLKRYLR 180 Query: 251 GKETFFIN----NDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATA 304 ++ ++ N Q ++ K +AG+NK + H +R AT+S +G Sbjct: 181 QNKSEWLFPSEINPDQHVHYVTVERILKKIVKRAGINKKVTPHTLRHTFATLSLASGLDI 240 Query: 305 HELMATYGWKTVDQAETYTKGADRIRLGIKN 335 E+ G ++ + YT D RL K Sbjct: 241 REIQELLGHSSLSSTQIYTH-VDPQRLKQKT 270 >gi|116511440|ref|YP_808656.1| integrase-recombinase [Lactococcus lactis subsp. cremoris SK11] gi|116107094|gb|ABJ72234.1| Integrase [Lactococcus lactis subsp. cremoris SK11] Length = 311 Score = 113 bits (283), Expect = 4e-23, Method: Composition-based stats. Identities = 40/302 (13%), Positives = 95/302 (31%), Gaps = 36/302 (11%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS-----GDFDYRKITTKHIR---SG 122 + L+ EY G+ + + ++ + D+ I + D I H + S Sbjct: 3 FEKLVKEYLLELKLGNYSKETMETYRQHIDKFIDFYKKEISNEMDIYAINKIHYKLFISQ 62 Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 + + L S + + + +R++ + +P S++ K + + + ++++ Sbjct: 63 LLDNSLRATYINAILKSNKAFYSYLIREQVLKTSPMDSIKLLKETKQALTTFNDDEVKAM 122 Query: 183 KSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238 + W+ + + + L +G+R S+ L + + K V + Sbjct: 123 LNVWNFNTYLNARNKCIIAVLADTGIRISELINIKDSDLTDQYIRV-LGKGDKWRVVPIS 181 Query: 239 DGFMKLLAMTPI-GKETF--FINNDKQ-------------KMNATQFSIWFKAKA----- 277 + LL F N + + + + A Sbjct: 182 NELNYLLTKYKRLRDNHFNKIRNRNGKVRELDSELFLGKTGRSIKTITNIEVMIAQTGLQ 241 Query: 278 --TKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335 +A V S H R + S + G + G + + Y + +L K Sbjct: 242 ANVRASVRCSPHQFRHYWTCKSLELGQDIFTISKLLGHTNLSTTQIYLQKLTNEQLISKA 301 Query: 336 SR 337 + Sbjct: 302 VK 303 >gi|325288106|ref|YP_004263896.1| integrase family protein [Cellulophaga lytica DSM 7489] gi|324323560|gb|ADY31025.1| integrase family protein [Cellulophaga lytica DSM 7489] Length = 364 Score = 113 bits (283), Expect = 4e-23, Method: Composition-based stats. Identities = 45/257 (17%), Positives = 84/257 (32%), Gaps = 23/257 (8%) Query: 97 SYFDQIIRKSGDFDYRKITTKHIRS----------GVESRKHTPSSAIQFLTSMRVLFKW 146 + + D ++ I + G ++ + +S + K Sbjct: 109 KHLKKFCPT--DVSFQDIDKSFVERFKEYLDKEAIGRAGKQLSQNSKYSYYGKFSAALKQ 166 Query: 147 AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRC 206 AV+ + +NP VE K+ T +++Q+ + E + AF F +GLR Sbjct: 167 AVKDGILKVNPANGVEYFKQGEPQREFLTLDELQKAVNTECELPILKNAFIFSALTGLRW 226 Query: 207 SDSCRAGVQHL-----QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK 261 SD + + + +KT + T+ + D LL + F Sbjct: 227 SDIEKLIWSEIQHSKEMGYYIRFRQKKTKGVETLPISDQARNLLGEKGNPDDKVFDGLHY 286 Query: 262 QKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQA 319 + + W AG+ K+ H R AT+ G + + G K + Sbjct: 287 SAWSNLKLQQWMMK----AGITKTITFHCARHTYATLQLTLGTDIYTVSKLLGHKELRTT 342 Query: 320 ETYTKGADRIRLGIKNS 336 + Y K D + N Sbjct: 343 QIYAKVIDDKKKEAANR 359 >gi|325982877|ref|YP_004295279.1| tyrosine recombinase XerC [Nitrosomonas sp. AL212] gi|325532396|gb|ADZ27117.1| tyrosine recombinase XerC [Nitrosomonas sp. AL212] Length = 297 Score = 113 bits (283), Expect = 4e-23, Method: Composition-based stats. Identities = 39/267 (14%), Positives = 91/267 (34%), Gaps = 18/267 (6%) Query: 76 SEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES---RKHTPS 131 Y + L+ + S+ ++ G D ++ + +IR + + Sbjct: 10 VAYIDHLAYERRLSPLTCKSYARDIRVLLEHLGTDDLAQVQSPNIRQAIAQLHGKGLGGR 69 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG-- 189 S + L++ + + +R+ NPC +V PK + + ++ + F E Sbjct: 70 SLARMLSAWCGFYNFLIRKHGFQHNPCYAVRVPKSPQKLPHALSPDEATRLLQFPVENIL 129 Query: 190 -SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE--------LPD 239 ++ FE SGLR ++ + + +I+ K G V + Sbjct: 130 LARDSAMFELFYSSGLRLAELTHLRPEDVHFAEGTIRVLGKGGKARIVPVGEYALHSITT 189 Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS 297 L + F++ ++ + K++A + G+++ H +R A+ Sbjct: 190 WLALRLQIIKPNVTALFLSRRGDAISMRAIAYRLKSRARQQGLHQNVHPHVLRHSFASHV 249 Query: 298 ADAGATAHELMATYGWKTVDQAETYTK 324 + + G + + YT Sbjct: 250 LQSSGDLRAVQEMLGHAHITSTQVYTH 276 >gi|332093830|gb|EGI98884.1| integrase [Shigella boydii 5216-82] Length = 256 Score = 113 bits (283), Expect = 4e-23, Method: Composition-based stats. Identities = 48/251 (19%), Positives = 89/251 (35%), Gaps = 19/251 (7%) Query: 96 ESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH--TPSSAIQFLTSMRVLFKWAVRQEYV 153 S I R D ITTK I + + +SA +++ F+ A+ + ++ Sbjct: 1 MSKIKAIRRGLPDAPLEDITTKEIAAMLNGYIDEGKAASAKLIRSTLSDAFREAIAEGHI 60 Query: 154 AINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAG 213 NP + K + R E ++ +++ S RLA E + +G R D C Sbjct: 61 TTNPVAATRAAKSEVRRSRLTADEYLKIYQAAESSPCWLRLAMELAVVTGQRVGDLCEMK 120 Query: 214 VQHLQNNIFSIKTQKTGTIITVE---------LPDGFMKLLAMTPIGKETFFINNDKQKM 264 + + ++ KTG I + + +G ET + ++ + Sbjct: 121 WSDIVDGYLYVEQSKTGVKIAIPTTLHVDALGISMKETLDKCKEILGGETIIASTRREPL 180 Query: 265 NATQFSIWFKAKATKAGV-----NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319 ++ S +F +G+ + H +R SA + + G K+ A Sbjct: 181 SSGTVSRYFMRARKASGLSFEGDPPTFHELRNLSA-RLYEKQISDKFAQHLLGHKSDTMA 239 Query: 320 ETYTKGADRIR 330 Y DR R Sbjct: 240 SQY--RDDRGR 248 >gi|319785871|ref|YP_004145346.1| tyrosine recombinase XerC [Pseudoxanthomonas suwonensis 11-1] gi|317464383|gb|ADV26115.1| tyrosine recombinase XerC [Pseudoxanthomonas suwonensis 11-1] Length = 291 Score = 113 bits (283), Expect = 4e-23, Method: Composition-based stats. Identities = 36/256 (14%), Positives = 91/256 (35%), Gaps = 16/256 (6%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGV---ESRKHTPSSAIQFLTS 139 +++ ++ ++ + + + D ++ +R V R +P+S + L++ Sbjct: 15 RAMSPHTLDAYRRDLQALQDWAFERGEDVVRMDGGRLREFVASEHRRGLSPTSLQRRLSA 74 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---WSEGSQPRLAF 196 R + W ++ + +P + + P+ + + ++ Q G + R Sbjct: 75 CRSYYAWLLKHGVIEASPAIGLRAPRAPRKLPQVLDVDEAVQLVEVDTSAPLGLRDRALL 134 Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-ITVEL----PDGFMKLLAMTPIG 251 E SGLR S+ C + L + + G+ +V + + + T G Sbjct: 135 ELFYSSGLRLSELCALRWRDLHLDQGLVTVLGKGSRQRSVPVGSHARRALEEWRSSTGAG 194 Query: 252 KETF-FINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELM 308 + F F ++ + + A + G+ + H +R A+ ++ + Sbjct: 195 SDDFVFPGRGGGPISQRAVQVRMRQLAARQGLFKHVHPHMLRHSFASHVLESSGDLRGVQ 254 Query: 309 ATYGWKTVDQAETYTK 324 G + + YT Sbjct: 255 ELLGHADIATTQIYTH 270 >gi|71725244|ref|YP_272203.1| phage integrase family site specific recombinase [Pseudomonas syringae pv. phaseolicola 1448A] gi|71558834|gb|AAZ38044.1| site-specific recombinase, phage integrase family [Pseudomonas syringae pv. phaseolicola 1448A] Length = 320 Score = 113 bits (283), Expect = 4e-23, Method: Composition-based stats. Identities = 53/277 (19%), Positives = 105/277 (37%), Gaps = 32/277 (11%) Query: 84 WGSLA-VNSRISFESYFDQIIRKSGDF---DYRKITTKHI---RSGVESRKHTPSSAIQF 136 + +L +R ++++ G D+R++T H+ R+ +E R ++ + Sbjct: 33 FANLDNRRTRRAYQNDLTDFSSFIGLASADDFRQVTRSHVLAWRADLEQRGLAGATIRRK 92 Query: 137 LTSMRVLFKWAVRQE-YVAINPCLSVERPKRKT-EGIRPWTKED-----MQQFKSFWSEG 189 L ++ LF + NP V+RP+ ++ EG P + ++ +G Sbjct: 93 LAALASLFDHLLDNNAVAGGNPVHGVKRPRIESNEGKTPALGDHQAKALLEAPDESTLKG 152 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKT-QKTGTIITVELPDG------ 240 + R LLY GLR ++ + V + + I +K K G + + L Sbjct: 153 RRDRAMLAVLLYHGLRREEAAQLQVSDIQERRGIQHLKIHGKGGKVRYLPLHPVAAGRIH 212 Query: 241 --FMKLLAMTPIGKETFFINNDKQ----KMNATQFSIWFKAKATKAGV---NKSAHGVRK 291 + K FI+ + ++A +A A KAG+ HG+R Sbjct: 213 LYLERSEHHLADRKVPLFISLRGKSTGAGVSANGIYTVVEAYAKKAGIEVAGLGVHGLRA 272 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 +AT + + A ++ G + Y + +R Sbjct: 273 TAATNALEHEADIAKVQVWLGHANISTTRIYDRRQNR 309 >gi|314936587|ref|ZP_07843934.1| tyrosine recombinase XerC [Staphylococcus hominis subsp. hominis C80] gi|313655206|gb|EFS18951.1| tyrosine recombinase XerC [Staphylococcus hominis subsp. hominis C80] Length = 297 Score = 113 bits (283), Expect = 4e-23, Method: Composition-based stats. Identities = 41/266 (15%), Positives = 97/266 (36%), Gaps = 22/266 (8%) Query: 85 GSLAVNSRISFE---SYFDQIIRKSGDFDYRKITTKHIRSGVE---SRKHTPSSAIQFLT 138 + + ++ ++ + F+Q + + + R K R+ + S ++ + ++ Sbjct: 16 RNFSDHTLKAYHDDLAQFNQFLEQ-ELLNLRTFEYKDARNYLSYLYSNNLKRTTVSRKIS 74 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRL 194 ++R +++ + Q+ NP + + PK++ + + +E+M+ + +G + R+ Sbjct: 75 TLRTFYEFWMTQDTSVNNPFIQLVHPKKEQYLPQFFYEEEMEALFNTVSNDAKKGLRDRV 134 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE--------LPDGFMKLL 245 E L +G+R S+ V L N+ +K K V + K Sbjct: 135 VIELLYATGIRVSELVNIKVMDLDMNLPGVKVLGKGNKERFVPFGEFCRQSIEQYLEKFK 194 Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATK-AGV-NKSAHGVRKFSATISADAGAT 303 + +N + + AGV H +R AT + GA Sbjct: 195 PLKSKSHPYLIVNMKGDPITERGIRYLLNDVVKRTAGVTEIHPHKLRHTFATHLLNQGAD 254 Query: 304 AHELMATYGWKTVDQAETYTKGADRI 329 + + G + YT +++ Sbjct: 255 LRTVQSLLGHVNLSTTGKYTHVSNQQ 280 >gi|325107724|ref|YP_004268792.1| integrase family protein [Planctomyces brasiliensis DSM 5305] gi|324967992|gb|ADY58770.1| integrase family protein [Planctomyces brasiliensis DSM 5305] Length = 303 Score = 113 bits (283), Expect = 4e-23, Method: Composition-based stats. Identities = 51/290 (17%), Positives = 94/290 (32%), Gaps = 29/290 (10%) Query: 59 EYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRI----SFESYFDQIIRKSGD-FDYRK 113 E I R + L + A SR + +G+ F+ + Sbjct: 10 EGIRVGRAETGLLNAFLDA-------HDFADGSRRGFVLDLRKFAGWFAEANGERFEVGR 62 Query: 114 ITTKHIRSG----VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169 +TT+ I + + ++ + L ++R F W + V++NP V+ KR+ Sbjct: 63 VTTRDITDFKTFLRKDKGQAVATINRSLVTLRRFFGWLAERGTVSLNPAKPVKELKRQQL 122 Query: 170 GIRPWTKEDMQQFKSFWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHLQNNI----FS 223 + + ++++ + R F +LY+G R SD + L + Sbjct: 123 APKGLDRTEVRKLLREIELRNDLRAGAIFSVMLYTGCRVSDLVTLELTDLMIGERKGSVT 182 Query: 224 IKTQKTGTIITVELPDGFMKLLAM-----TPIGKETFFINNDKQKMNATQFSIWFKAKAT 278 + K V LP + L PI + F+ + + Sbjct: 183 FRLGKGNKQRVVPLPLPARQSLRAYLDSRPPIPSDLVFVGERG-PLTDKGVRALCDKYSA 241 Query: 279 KAGVNKSAHGVRKFSA-TISADAGATAHELMATYGWKTVDQAETYTKGAD 327 GV + H R A AD L G + ++ YT+ D Sbjct: 242 IIGVKLTPHLFRHTMAHQFLADNENDLVGLAQILGHENLNTTARYTRRTD 291 >gi|291527524|emb|CBK93110.1| Site-specific recombinase XerD [Eubacterium rectale M104/1] Length = 306 Score = 113 bits (283), Expect = 4e-23, Method: Composition-based stats. Identities = 42/283 (14%), Positives = 94/283 (33%), Gaps = 30/283 (10%) Query: 71 LKWLISEYRKSAHWGS-LAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RK 127 L+ L Y + L + ++ Q + +ITT + + ++ Sbjct: 4 LQTLTENYLEYCRTQKCLDEKTLKAYRIDLRQFSEEPSLEKIIEITTNDLEDYIARLHQQ 63 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE-RPKRKTEGIRPWTKEDMQQF---- 182 + P + + + S++ F + +E +AINP ++ + T + +++F Sbjct: 64 YKPKTVKRKIASIKAFFHYLEYKELLAINPFTKIQVHFREPTILPKIIPLHTVEKFLTMI 123 Query: 183 ---KSFWSEGSQPRLAF------EFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGT 231 + Q R A E L +G+R S+ C + + + I K Sbjct: 124 YTQRDNAKTNYQRRNALRDAAVSELLFATGMRISELCSLKNEDINLHDGSILI-YGKGDK 182 Query: 232 IITV--------ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283 + ++ + + FF N + + ++ + A ++ Sbjct: 183 ERRIHIGNDSVSKIIEEYKAEFQTEIRSCNHFFANQNGKPLSDQAVRRMINKYCSLADID 242 Query: 284 K--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 + H R AT +A + G +++ E YT Sbjct: 243 LHITPHMFRHTFATSLLEADVDIRYIQEMLGHSSINVTEIYTH 285 >gi|260892475|ref|YP_003238572.1| integrase family protein [Ammonifex degensii KC4] gi|260864616|gb|ACX51722.1| integrase family protein [Ammonifex degensii KC4] Length = 304 Score = 113 bits (283), Expect = 4e-23, Method: Composition-based stats. Identities = 39/230 (16%), Positives = 79/230 (34%), Gaps = 23/230 (10%) Query: 117 KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176 + + R + ++ + L + R F++ R+ + +P V PKR+ R Sbjct: 59 RRFLGYLHERSLSRNTIARKLAAWRSFFRFLCREGILNADPLKLVSAPKREKRLPRVLYP 118 Query: 177 EDMQQFKSFWSEGS-----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231 + + + +G+ + R E L +GLR S+ + + ++ G Sbjct: 119 HEAEALVT-APKGTDPKAWRDRALLEVLYGAGLRVSEVEHLNLSDVDLERGELRVWGKGG 177 Query: 232 IITVELPDGFMKL---------------LAMTPIGKETFFINNDKQKMNATQFSIWFKAK 276 + L + F+N+ ++++A + + Sbjct: 178 KERIALLHPLAVAALKDYLERGRPLLLSRRSRGEEEPALFLNHRGERLSARGIRLIVTSY 237 Query: 277 ATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 A K GV + H R AT D GA + G K + + YT+ Sbjct: 238 AAKTGVKGKVTPHTFRHSFATHLLDGGADLRTVQELLGHKRLATTQIYTR 287 >gi|322806105|emb|CBZ03672.1| tyrosine recombinase XerD [Clostridium botulinum H04402 065] Length = 205 Score = 113 bits (283), Expect = 4e-23, Method: Composition-based stats. Identities = 31/197 (15%), Positives = 73/197 (37%), Gaps = 16/197 (8%) Query: 152 YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQPRLAFEFLLYSGLRCSD 208 V+ +P L E PK + + + E++ + + +G + + E + +G++ ++ Sbjct: 1 MVSEDPTLGYEIPKIERTIPKILSVEEVDKLLNSPNSSKKGLRDKAMLELMYATGVKITE 60 Query: 209 SCRAGVQHLQNNIFSIKTQKTGTIITVELPDG------FMKLLAMTPIGK----ETFFIN 258 + + IK + + + +P G L + P + F+N Sbjct: 61 LLNLNIYDINLKFNYIKCRGSKKRERI-IPIGSYAIKCLKNYLEVRPAINVYNLDYLFLN 119 Query: 259 NDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTV 316 +M F K A +A ++K ++ +R A GA + G K + Sbjct: 120 LKGTQMTRQGFWKIIKFYAKEASIDKEIDSYTLRHSFAVHLLQNGADIKSVQELLGHKDL 179 Query: 317 DQAETYTKGADRIRLGI 333 + Y+ + + ++ Sbjct: 180 AATQIYSSISKKSKIAE 196 >gi|300692939|ref|YP_003753934.1| site-specific tyrosine recombinase [Ralstonia solanacearum PSI07] gi|299079999|emb|CBJ52674.1| site-specific tyrosine recombinase [Ralstonia solanacearum PSI07] Length = 329 Score = 113 bits (283), Expect = 4e-23, Method: Composition-based stats. Identities = 52/290 (17%), Positives = 99/290 (34%), Gaps = 42/290 (14%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD-----FDYRKITTKHIRSGVESR-- 126 I+ Y + + L+ ++ S+ ++++ G D ++ HIR + Sbjct: 20 IAAYLDTLKFERQLSQHTLASYAREL-AVLQQLGAQFAAGIDLMQLQPHHIRRMMAQLHG 78 Query: 127 -KHTPSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQ 180 + S + L++ R ++W A+R V NP V PK + + + E M+ Sbjct: 79 GGLSGRSIARALSAWRGWYRWLALRDAAVTANPVDGVRAPKSPKKLPKALSVEQAVALME 138 Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN------IFSIKTQ------K 228 Q E + R E GLR S+ ++H++ + T+ K Sbjct: 139 QLPGDDPETVRDRAVNELFYSCGLRLSELVGLDLRHVRAGDYESASWLDLDTREVMVLGK 198 Query: 229 TGTIITVELPDGFMKLL-------------AMTPIGKETFFINNDKQKMNATQFSIWFKA 275 TV + + L P F++ +++ Q + K Sbjct: 199 GSKRRTVPVGRKAAEALVAWLAARPQLARPDAAPEDAHALFLSARGKRLAQRQIQMRMKR 258 Query: 276 KATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 A AGV H +R AT + + G ++ + YT Sbjct: 259 NAIAAGVPADVHPHVLRHSFATHMLQSSGDLRAVQELLGHASIASTQVYT 308 >gi|138894733|ref|YP_001125186.1| site-specific tyrosine recombinase XerC [Geobacillus thermodenitrificans NG80-2] gi|134266246|gb|ABO66441.1| Integrase/recombinase (XerC/CodV family) [Geobacillus thermodenitrificans NG80-2] Length = 309 Score = 113 bits (283), Expect = 4e-23, Method: Composition-based stats. Identities = 44/284 (15%), Positives = 90/284 (31%), Gaps = 28/284 (9%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE------SR 126 L EY + + + + + + +Q ++ + ++ + Sbjct: 18 QLFLEYLQIE--KNYSQYTIVCYRRDIEQFLQFMNEEGIDELNEVAYSDVRLYLTKLYGQ 75 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF- 185 + S + ++S+R +K+ +R+ + A NP PK++ + +E+++ Sbjct: 76 QLASRSVARKISSLRSFYKFLLREGWTAENPFALAALPKKEQKIPNFLYREELEALFRVN 135 Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGF 241 + G + E L +G R S+ C + L + K V Sbjct: 136 DGNTAVGQRNAALLELLYATGARVSECCHIRLSDLDFAASTVLIHGKGNKQRYVPFGRPA 195 Query: 242 MKLLAM------------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAH 287 + L P F+N + A + N S H Sbjct: 196 REALERYIGGGRRELVGKLPADHRYLFVNARGNPLTPRGVRYILDRIVETAALTQNISPH 255 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIR 330 +R AT + GA + G + + YT DR+R Sbjct: 256 VLRHTFATHLLNEGADLRSVQELLGHAHLSSTQVYTHVTKDRLR 299 >gi|74311311|ref|YP_309730.1| putative integrase fragment [Shigella sonnei Ss046] gi|73854788|gb|AAZ87495.1| putative integrase fragment [Shigella sonnei Ss046] Length = 270 Score = 113 bits (283), Expect = 4e-23, Method: Composition-based stats. Identities = 46/259 (17%), Positives = 91/259 (35%), Gaps = 19/259 (7%) Query: 88 AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH--TPSSAIQFLTSMRVLFK 145 + I++ S I R D ITTK I + + +SA +++ F+ Sbjct: 7 KQKTLINYMSKIKAIRRGLPDAPLEDITTKEIAAMLNGYIDEGKAASAKLIRSTLSDAFR 66 Query: 146 WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLR 205 A+ + ++ P + K + R E ++ +++ S RLA E + +G R Sbjct: 67 EAIAEGHITTKPVAATRAAKSEVRRSRLTADEYLKIYQTAESSPCWLRLAMELAVVTGQR 126 Query: 206 CSDSCRAGVQHLQNNIFSIKTQKTGTIITVE---------LPDGFMKLLAMTPIGKETFF 256 D C + + ++ KTG I + + +G ET Sbjct: 127 VGDLCEMKWSDIVDGYLYVEQSKTGVKIAIPTTLHVDALGISMKETLDKCKEILGGETII 186 Query: 257 INNDKQKMNATQFSIWFKAKATKAGV-----NKSAHGVRKFSATISADAGATAHELMATY 311 + ++ +++ S +F +G+ + H +R + + + Sbjct: 187 ASTRREPLSSGTVSRYFMRARKASGLSFEGDPPTFHELR-SLSARLYEKQISDKFAQHLL 245 Query: 312 GWKTVDQAETYTKGADRIR 330 G K+ A Y DR R Sbjct: 246 GHKSDTMASQY--RDDRGR 262 >gi|223938788|ref|ZP_03630676.1| integrase family protein [bacterium Ellin514] gi|223892486|gb|EEF58959.1| integrase family protein [bacterium Ellin514] Length = 306 Score = 113 bits (283), Expect = 4e-23, Method: Composition-based stats. Identities = 44/287 (15%), Positives = 103/287 (35%), Gaps = 37/287 (12%) Query: 74 LISEYRKS-AHWGSLAVNSRISFESYFDQII--RKSGDF-DYRKITTKHIRSGVE----- 124 L+ ++ + H + +++ ++ + + + + D++++ KH+ + + Sbjct: 4 LVEDFLQYLRHERGQSEHTQKTYAALLGKFLNWAQIQKLTDWKEVELKHLTAFLMFERER 63 Query: 125 ---------SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175 RK + S + ++R +K+A ++ + +N S+ P+R + + Sbjct: 64 LVEVKEGQSPRKLSSESVYLEIAALRAFYKFAENEKILPLNIAESLSLPRRWKRLPKALS 123 Query: 176 KEDMQQFKSFWSEGSQ----PRLAFEFLLYSGLRCSDS--CRAGVQHLQNNIFSIKTQKT 229 ++ Q + + + E SGLR ++ R HL+ ++ + Sbjct: 124 DLEITQLLTLEIPETPRTLGDQAVLELAYASGLRLAELRNIRMEQLHLEVGFINVIGKGN 183 Query: 230 GTIITVELPDGFMKLLAM----------TPIGKETFFINNDKQKMNATQFSIWFKAKATK 279 + V + ++ L TP F+ A K + + Sbjct: 184 KERV-VPVGSKAVQALQRYLESGRPKLVTPRSPANVFLTMRGTPFAAVTLWKRIKDRVKR 242 Query: 280 AGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 +GV N + H +R AT + GA + G + E YT Sbjct: 243 SGVARNVTPHMLRHSFATHLLEHGADLRVIQELLGHANISTTEIYTH 289 >gi|262163686|ref|ZP_06031427.1| tyrosine recombinase XerC [Vibrio mimicus VM223] gi|262027902|gb|EEY46566.1| tyrosine recombinase XerC [Vibrio mimicus VM223] Length = 310 Score = 113 bits (282), Expect = 4e-23, Method: Composition-based stats. Identities = 34/268 (12%), Positives = 90/268 (33%), Gaps = 22/268 (8%) Query: 77 EYRKSAHWGSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIRSGV---ESRKHTP 130 Y S L++ ++ +++ + + + + G + ++ +R V + + Sbjct: 22 AYLHSE--KGLSLYTQRNYKQQLETMARYLAQMGLTSWPQLDAAWVRQLVVLGKRQGMKA 79 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---S 187 SS L+S+R + + + + NP V P+++ + ++M Q Sbjct: 80 SSISTRLSSLRSFLDFLILRGELQANPAKGVSAPRKQRPLPKNLDVDEMAQLLEVTDDDP 139 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVE-------LP 238 + R E + SGLR ++ ++ + ++ + + + Sbjct: 140 LSIRDRAIMELMYGSGLRLAELVSIDMKDVNLRDGEIRVIGKGNKERKVWFAGQAQEWVG 199 Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATI 296 + + F++ +++ K V + S H +R AT Sbjct: 200 KWLKLRSQLANSDETALFVSKLGTRISHRSVQKRMAEWGQKQAVASHISPHKLRHSFATH 259 Query: 297 SADAGATAHELMATYGWKTVDQAETYTK 324 ++ + G + + + YT Sbjct: 260 MLESSNNLRAVQELLGHENIATTQIYTH 287 >gi|154508823|ref|ZP_02044465.1| hypothetical protein ACTODO_01333 [Actinomyces odontolyticus ATCC 17982] gi|153798457|gb|EDN80877.1| hypothetical protein ACTODO_01333 [Actinomyces odontolyticus ATCC 17982] Length = 315 Score = 113 bits (282), Expect = 4e-23, Method: Composition-based stats. Identities = 43/289 (14%), Positives = 97/289 (33%), Gaps = 33/289 (11%) Query: 69 TTLKWLISEYRKSAH-WGSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIRSGVE 124 T+L+ L+ ++ + ++ ++ + + G + I+ + I Sbjct: 2 TSLEALVRDWVDYLRVEKGASAHTVSNYRRDVARYAFDMKSRGKVNVEDISPRDIEDYTM 61 Query: 125 SRKHTP--------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176 SS + ++R L K+A+ + V + + P++ + + Sbjct: 62 RLASGRVTGTPAAASSVARASAAIRGLHKYALTEGAVGTDAAAQLHAPRQGRHLPKALSV 121 Query: 177 EDMQQFKSFW-----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKT-QK 228 +++ + G + E L +G R S++ L ++ ++ K Sbjct: 122 DEVGRLLDAAHADDSPIGLRDAALLELLYATGARVSEAVSLSADDLDLDGDVPVVRLFGK 181 Query: 229 TGTIITVELPD-----------GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKA 277 V + LA G FF+N+ ++ + A Sbjct: 182 GRKERIVPVGSFAVDALYAYRVRARPALAARGRGSTAFFLNSRGGALSRQSAWTAIRRAA 241 Query: 278 TKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 A + + S H +R AT + GA+ E+ G +V + YT+ Sbjct: 242 EAAQLGERVSPHTLRHSFATHLLEGGASVREVQELLGHASVATTQIYTQ 290 >gi|68171192|ref|ZP_00544598.1| Phage integrase:Phage integrase, N-terminal SAM-like [Ehrlichia chaffeensis str. Sapulpa] gi|88658398|ref|YP_507161.1| phage integrase family site specific recombinase [Ehrlichia chaffeensis str. Arkansas] gi|67999386|gb|EAM86029.1| Phage integrase:Phage integrase, N-terminal SAM-like [Ehrlichia chaffeensis str. Sapulpa] gi|88599855|gb|ABD45324.1| site-specific recombinase, phage integrase family [Ehrlichia chaffeensis str. Arkansas] Length = 311 Score = 113 bits (282), Expect = 4e-23, Method: Composition-based stats. Identities = 43/269 (15%), Positives = 89/269 (33%), Gaps = 29/269 (10%) Query: 85 GSLAVNSRISFESYFDQIIR--------KSGDFDYRKITTKHIRSGVESR---KHTPSSA 133 A N+ S+ ++ I D + +R R + Sbjct: 21 RRYATNTVDSYLRDVNKFIEFLYMCVLRPVTLEDIIGVKVADLRKWFAFRYQANIEAVTN 80 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS--- 190 + L++++ F++ R + + RPK K+ R T+ +Q+ +++ Sbjct: 81 ARSLSALKNFFRYLSRTYNIDGQAVFCLSRPKLKSTLPRTLTQSHIQKIIDYYALLDTDW 140 Query: 191 ---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP---DGFMKL 244 + L GLR S++ Q+++ I +++ I LP + Sbjct: 141 IVKRDFALIVLLYGCGLRISEAVNLKFQNIRREELLIIGKRSKERILPILPIVRQSLDEY 200 Query: 245 LAMTP-------IGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSAT 295 + P + E F+ +K+ T F+ + + G+ + H R AT Sbjct: 201 VRCCPYHMELNSVKNEYVFVGVRGKKLKRTYFANRIQKICKEIGLPDVITPHAFRHSFAT 260 Query: 296 ISADAGATAHELMATYGWKTVDQAETYTK 324 GA + G + + YT Sbjct: 261 HLFLGGADIRSIQELLGHANLSTTQIYTH 289 >gi|218263862|ref|ZP_03477831.1| hypothetical protein PRABACTJOHN_03521 [Parabacteroides johnsonii DSM 18315] gi|218222461|gb|EEC95111.1| hypothetical protein PRABACTJOHN_03521 [Parabacteroides johnsonii DSM 18315] Length = 386 Score = 113 bits (282), Expect = 4e-23, Method: Composition-based stats. Identities = 47/301 (15%), Positives = 103/301 (34%), Gaps = 26/301 (8%) Query: 41 STFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSA-----HWGSLAVNSRISF 95 + F+ Y +R + + Y + + + + F Sbjct: 90 TPFLEYYRK----MVEERRKNPESKGNWGNWRS-CLRYLEIYCDEKTTFRDVTPEFVMGF 144 Query: 96 ESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAI 155 + + + + + + ++++ + R + + +S + + +R A + + I Sbjct: 145 KEFLEHVEKDT----HKRVGPRRERDTF--QGLSQNSKVSYFNKLRACINQAYDERVIPI 198 Query: 156 NPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQ 215 NP +E K T ++++Q + + AF F +G+R SD + Sbjct: 199 NPLRGIEGFKAAEVKRDYLTLDEVRQLAATPCRYPILKRAFLFSCLTGIRKSDIQKLTWG 258 Query: 216 HLQN----NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI 271 +Q K +KTG +++ K L + F + + Sbjct: 259 EVQKFGEYTRIVFKQKKTGGQEYLDITPQAEKYLGERGNPDDLVFTGFTYGAWTSLELQR 318 Query: 272 WFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 W + AG+NK + H R A + D GA + + G K + + Y K D+ Sbjct: 319 W----SLAAGMNKNLTFHCGRHTFAILMLDLGADIYTVSKLLGHKELATTQIYAKVLDKN 374 Query: 330 R 330 + Sbjct: 375 K 375 >gi|296110353|ref|YP_003620734.1| site-specific recombinase, phage integrase family [Leuconostoc kimchii IMSNU 11154] gi|295831884|gb|ADG39765.1| site-specific recombinase, phage integrase family [Leuconostoc kimchii IMSNU 11154] Length = 304 Score = 113 bits (282), Expect = 5e-23, Method: Composition-based stats. Identities = 41/274 (14%), Positives = 92/274 (33%), Gaps = 29/274 (10%) Query: 78 YRKSAHWGSLAVNSRISFESYFDQII----RKSGDFDYRKITTKHIRSGVESRKHT---P 130 Y S + + ++ S D+ I + G ++R + +R + Sbjct: 12 YLVSER--QYSPLTLKAYLSDIDEFINFLAQNGGFTNFRAVQPLDVRVYLNDLYERHLAR 69 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ-----QFKSF 185 +S + ++S+R+ +++ V ++V NP ++ K + + + +M + Sbjct: 70 TSISRKISSLRMFYQFMVANQFVIDNPFENIALRKHQNHLPEFFYETEMATLFDTAYNQE 129 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVE-------- 236 + EFL +G R ++ + L + + K V Sbjct: 130 DKLWQRNAALLEFLYATGARVTEIATLTIAQLDFSQRLVLIHGKGNKDRYVPFGHFAAQA 189 Query: 237 ----LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVR 290 L + L A P + F+N+ + + A + ++ + H +R Sbjct: 190 LMQYLSETRADLTAKQPAPHQVVFVNHRGEPITAAGITYILNQLMQRSALTGKIHPHMLR 249 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK 324 AT + GA + G + + YT Sbjct: 250 HTFATHLLNNGADMRTVQELLGHVNLSTTQMYTH 283 >gi|167463333|ref|ZP_02328422.1| tyrosine recombinase xerC [Paenibacillus larvae subsp. larvae BRL-230010] gi|322384830|ref|ZP_08058491.1| site-specific tyrosine recombinase XerD-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321150299|gb|EFX43801.1| site-specific tyrosine recombinase XerD-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 317 Score = 113 bits (282), Expect = 5e-23, Method: Composition-based stats. Identities = 49/273 (17%), Positives = 99/273 (36%), Gaps = 25/273 (9%) Query: 88 AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS----------GVESRKHTPSSAIQFL 137 A N+R ++E Q ++++T K + + + P+S F+ Sbjct: 34 AANTRRNYERALQQFREFISYKPFQQVTWKEVEAYKLSLIQGRFAKSKKPLAPASVAAFI 93 Query: 138 TSMRVLFKWAVRQ--EYVAINPCLSVERPKRK-TEGIRPWTKEDMQQFKSFWSEGS-QPR 193 T +R +KW NP +SV P + TK ++ + + S + Sbjct: 94 TPLRSFYKWGSESNIGIFKHNPTVSVRMPPIQVNSKKHFLTKYEVGKLLQCLKQQSLRNY 153 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNN------IFSIKTQKTGTIITVELPDGFMKLL-- 245 L L+ GLR S+ + +I K G +++P KL Sbjct: 154 LIGLSLVLLGLRVSELVSMKWGDFHPDPLETSVWLTIPKAKGGKSRDIKIPKALWKLYTE 213 Query: 246 -AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGA 302 A T N ++ Q K+ ++G+ + H +R +AT++ GA Sbjct: 214 HAETLSESANPHANLQLFPISVRQIERIIKSAGIQSGIVKKLTPHWLRHTNATLALLQGA 273 Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335 + ++ T G ++ + Y ++++ + Sbjct: 274 SLQQVQETLGHSHINTTQRYLHTVEQMKKAAPD 306 >gi|160896902|ref|YP_001562484.1| integrase family protein [Delftia acidovorans SPH-1] gi|160362486|gb|ABX34099.1| integrase family protein [Delftia acidovorans SPH-1] Length = 365 Score = 113 bits (282), Expect = 5e-23, Method: Composition-based stats. Identities = 51/295 (17%), Positives = 94/295 (31%), Gaps = 41/295 (13%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIR---SGVE 124 L + Y + LA + + ++ + D + + HIR + + Sbjct: 28 LPAAVHAYLEHVRVQKRLADRTCALYALDMARLCTMARDAGQELLALQPAHIRRFVAQMH 87 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 SR +P L+ R F+WA +Q V NP V PK + +D Q + Sbjct: 88 SRGRSPRGIALILSGWRSFFRWAAQQSLVPFNPVEGVRGPKAPKPLPKALGVDDAVQLAA 147 Query: 185 FWS------EGSQPRLAFEFLLYSGLRCSDSCRAGV------QHLQNNIFSIK------T 226 F + ++ E L GLR + V Q ++ Sbjct: 148 FSNAEADPWIEARDAAITELLYSCGLRVGELVGLDVAPGQDTQRQGRGWIDLQAADAHVQ 207 Query: 227 QKTGTIITVELPDGFMKLLAMTPIGKET---------------FFINNDKQKMNATQFSI 271 K G TV + ++ L +ET FI +++ A Sbjct: 208 GKGGKRRTVPVGAAALQALQRWLALRETGLAGAAALAAHHESALFIGRRGERLGAQSVWT 267 Query: 272 WFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 + + +AG+ H +R A+ + + G ++ + YT+ Sbjct: 268 RLRQRGQQAGLSAGVHPHVLRHSFASHMLQSSGDLRAVQELLGHASISTTQIYTR 322 >gi|196247646|ref|ZP_03146348.1| tyrosine recombinase XerC [Geobacillus sp. G11MC16] gi|196212430|gb|EDY07187.1| tyrosine recombinase XerC [Geobacillus sp. G11MC16] Length = 300 Score = 113 bits (282), Expect = 5e-23, Method: Composition-based stats. Identities = 44/284 (15%), Positives = 90/284 (31%), Gaps = 28/284 (9%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE------SR 126 L EY + + + + + + +Q ++ + ++ + Sbjct: 9 QLFLEYLQIE--KNYSQYTIVCYRRDIEQFLQFMNEEGIDELNEVAYSDVRLYLTKLYGQ 66 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF- 185 + S + ++S+R +K+ +R+ + A NP PK++ + +E+++ Sbjct: 67 QLASRSVARKISSLRSFYKFLLREGWAAENPFALAALPKKEQKIPNFLYREELEALFRVN 126 Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGF 241 + G + E L +G R S+ C + L + K V Sbjct: 127 DGNTAVGQRNAALLELLYATGARVSECCHIRLSDLDFAASTVLIHGKGNKQRYVPFGRPA 186 Query: 242 MKLLAM------------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAH 287 + L P F+N + A + N S H Sbjct: 187 REALERYIGGGRRELVGKLPADHRYLFVNARGNPLTPRGVRYILDRIVETAALTQNISPH 246 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIR 330 +R AT + GA + G + + YT DR+R Sbjct: 247 VLRHTFATHLLNEGADLRSVQELLGHAHLSSTQVYTHVTKDRLR 290 >gi|298370045|ref|ZP_06981361.1| tyrosine recombinase XerC [Neisseria sp. oral taxon 014 str. F0314] gi|298281505|gb|EFI22994.1| tyrosine recombinase XerC [Neisseria sp. oral taxon 014 str. F0314] Length = 300 Score = 113 bits (282), Expect = 5e-23, Method: Composition-based stats. Identities = 46/271 (16%), Positives = 93/271 (34%), Gaps = 19/271 (7%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES---RK 127 ++ R+ R S ++++ + + + ++ R Sbjct: 10 FDDYLTALRQEGKSAHTVEAYRRDL-SQLERLLMLRPSENGADVRRGDFLAALKKLSQRN 68 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS--- 184 + S + L+ R W V++ +A +P +++ PK + +E + + Sbjct: 69 LSERSMARKLSVWRQYCGWLVQRGLMAADPTANLKAPKPPQRLPKAVQQEPLNHLLNQGC 128 Query: 185 -FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVEL---- 237 + + R FE L SGLR S+ C + + + T K G V L Sbjct: 129 GEDALALRDRAVFELLYGSGLRLSEVCGLNLHDVLPDEGWVGV-TGKGGKQRRVPLVRKS 187 Query: 238 PDGFMKLL--AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFS 293 D + L + G+ F N + +++ Q + A + G + S H +R Sbjct: 188 IDALLDYLPHRVAAEGEAALFTNKNGRRLGQRQIQKRLQQWAAEQGSAQHLSPHMLRHSY 247 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTK 324 A+ A + G + + YTK Sbjct: 248 ASHLLQASRDIRAVQELLGHSNLSTTQIYTK 278 >gi|255690132|ref|ZP_05413807.1| integrase/recombinase, phage integrase family [Bacteroides finegoldii DSM 17565] gi|260624416|gb|EEX47287.1| integrase/recombinase, phage integrase family [Bacteroides finegoldii DSM 17565] Length = 327 Score = 113 bits (282), Expect = 5e-23, Method: Composition-based stats. Identities = 45/279 (16%), Positives = 99/279 (35%), Gaps = 15/279 (5%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133 LI + + + S + S + IRK + + R ITT +R+ + + T + Sbjct: 52 LIDSFLSAKRVEGCSDKSIHYYRSTLNNAIRKI-EKNIRHITTDDLRNYLNDYQQTSGAT 110 Query: 134 ----IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 + F W ++Y+ +P + + K ++ E ++Q + EG Sbjct: 111 KVTVDNIRRILSSFFSWLEDEDYIVKSPVRRIHKVKVGKTVKETYSDEALEQMRDHC-EG 169 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDG----FMKL 244 + + L +G+R + + + N I T K V + Sbjct: 170 IRDLALIDLLASTGMRVGELVKLNRNDIDFENRECIVTGKGDKQRRVYFDARTKIHLQRY 229 Query: 245 LAMTPIGKETFFIN--NDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAG 301 LA F++ ++ + I + + + K H R+ AT++ D G Sbjct: 230 LAERIDDNPALFVSLLAPYDRLQISGVEIRLRRLGRELNIPKVHPHKFRRTLATMAIDKG 289 Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340 ++ G +++D Y ++ + + + + I Sbjct: 290 MPIEQVQHLLGHQSLDTTLQYA-MVNQTNVKMSHRKFIG 327 >gi|254882931|ref|ZP_05255641.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] gi|319639734|ref|ZP_07994466.1| integrase [Bacteroides sp. 3_1_40A] gi|254835724|gb|EET16033.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] gi|317388650|gb|EFV69497.1| integrase [Bacteroides sp. 3_1_40A] Length = 200 Score = 113 bits (282), Expect = 5e-23, Method: Composition-based stats. Identities = 38/203 (18%), Positives = 76/203 (37%), Gaps = 20/203 (9%) Query: 154 AINPCLSVERPKRKTEGIR--PWTKEDMQQFKSFWSEGSQP--RLAFEFLLYSGLRCSDS 209 + +PC + K ++ +R + +++Q+ + + P R AF F LY GLR + Sbjct: 4 SKDPCKDIT-CKVDSQMLRKDVLSPKEVQKLMACHYDNENPTVRQAFIFCLYCGLRFCNV 62 Query: 210 CRAGVQHLQ--NNIFSIKTQKTG-----TIITVELPDGFMKLLAMTPIGKETFFINNDKQ 262 +++ N + + K + + + L DG + ++ P K + Sbjct: 63 KDLTFKNVDYANRLLKFEQSKAKGHSASSGVVIPLNDGLLSIIGEVPTDKNCLIFDLS-- 120 Query: 263 KMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320 K +AG++K S H R A + GA + + G + E Sbjct: 121 --TYESCCKSVKRWVKRAGIDKHISWHCARHSFAVNILNNGANIKTVASLLGHSGLKHTE 178 Query: 321 TYTKGADRIRLGIKNSRRISSVV 343 YT+ D +L + + + Sbjct: 179 KYTRAVD--KLKEEAINSLPELK 199 >gi|228475035|ref|ZP_04059763.1| tyrosine recombinase XerC [Staphylococcus hominis SK119] gi|228271020|gb|EEK12408.1| tyrosine recombinase XerC [Staphylococcus hominis SK119] Length = 297 Score = 113 bits (282), Expect = 5e-23, Method: Composition-based stats. Identities = 41/266 (15%), Positives = 97/266 (36%), Gaps = 22/266 (8%) Query: 85 GSLAVNSRISFE---SYFDQIIRKSGDFDYRKITTKHIRSGVE---SRKHTPSSAIQFLT 138 + + ++ ++ + F+Q + + + R K R+ + S ++ + ++ Sbjct: 16 RNFSDHTLKAYHDDLAQFNQFLEQ-ELLNLRTFEYKDARNYLSYLYSNNLKRTTVSRKIS 74 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRL 194 ++R +++ + Q+ NP + + PK++ + + +E+M+ + +G + R+ Sbjct: 75 TLRTFYEFWMTQDTSVNNPFIQLVHPKKEQYLPQFFYEEEMEALFNTVSNDAKKGLRDRV 134 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE--------LPDGFMKLL 245 E L +G+R S+ V L N+ +K K V + K Sbjct: 135 VIELLYATGIRVSELVNIKVMDLDMNLPGVKVLGKGNKERFVPFGEFCRQSIEQYLEKFK 194 Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATK-AGV-NKSAHGVRKFSATISADAGAT 303 + +N + + AGV H +R AT + GA Sbjct: 195 PLKSKSHPYLIVNMKGDPITERGVRYLLNDVVERTAGVTEIHPHKLRHTFATHLLNQGAD 254 Query: 304 AHELMATYGWKTVDQAETYTKGADRI 329 + + G + YT +++ Sbjct: 255 LRTVQSLLGHVNLSTTGKYTHVSNQQ 280 >gi|254517350|ref|ZP_05129407.1| phage integrase family protein [gamma proteobacterium NOR5-3] gi|219674188|gb|EED30557.1| phage integrase family protein [gamma proteobacterium NOR5-3] Length = 391 Score = 113 bits (282), Expect = 5e-23, Method: Composition-based stats. Identities = 42/293 (14%), Positives = 92/293 (31%), Gaps = 24/293 (8%) Query: 49 SALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD 108 + + + + PT + Y H + + + ++ + G Sbjct: 83 AEIALGADPQAEAQQRKAVPTWHAFFTDSYL--PHAKQTKRTWKNDADMHRLRLGPRFGA 140 Query: 109 FDYRKITTKHIRSGVESRKHT---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK 165 IT + ++ + + P++A L +R AV + NP V++ Sbjct: 141 TPINGITRQEVQQFHNELRESGMAPATADHHLKLLRHALNLAVDWGLLQANPAARVKQFN 200 Query: 166 RKTEGIRPWTKEDMQQFKSFWSEGS--QPRLAFEFLLYSGLRCSDSCRAGVQHLQNN--- 220 E R T ++++ A +LL +G R ++ A + Sbjct: 201 VFNEVERYLTDPELRRLLEVLKAHENRPVACAVLWLLATGARVGEALAAEWPDIDRGNRV 260 Query: 221 -IFSIKTQKTGTIITVEL-------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIW 272 + K+ + ++ L D L P G+ FI + Sbjct: 261 WVVHATNSKSKKLRSIPLNDVALGVLDELQTLPRYQPGGR--LFIGKRGPLGTINKVWYG 318 Query: 273 FKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 + AG+ + H +R A++ ++G + +E+ G Y+ Sbjct: 319 IRDA---AGLESFTLHCLRHSHASLLVNSGHSLYEVQRVLGHSDPKVTMRYSH 368 >gi|150390005|ref|YP_001320054.1| phage integrase family protein [Alkaliphilus metalliredigens QYMF] gi|149949867|gb|ABR48395.1| phage integrase family protein [Alkaliphilus metalliredigens QYMF] Length = 354 Score = 113 bits (282), Expect = 5e-23, Method: Composition-based stats. Identities = 34/262 (12%), Positives = 94/262 (35%), Gaps = 18/262 (6%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES----RKHTP 130 + + K + ++ S+ + + + + +T + + + ++++ Sbjct: 81 LQQLEKQFTLKGYSPKTKKSYIGHVKRFLGFINNKP-EVLTKQDVEKYMYHLLNVQENSH 139 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 + A Q L++++ ++ +++++ V + + RPK++ ++ ++ + Sbjct: 140 AFANQALSAIKFYYQHSLKKDKVLYD----LPRPKKEKTLPNILSQREVLSILDSVN-NI 194 Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTIITVELPDGFMKLLAMT 248 + + +GLR + R V + ++ ++ K L + + L Sbjct: 195 KHKSILLLTYSAGLRVGEVVRLKVGDIDSDRMLIHVRQGKGRKDRYTILSEVALSTLRKY 254 Query: 249 P-IGKETFFINNDKQK---MNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302 I K ++ ++ + F +A V K S H +R AT + G Sbjct: 255 AMIEKPKDWLFPGGKENCFLTERSVQKTFSVACKRAKVKKHASVHSLRHSFATHLLEGGT 314 Query: 303 TAHELMATYGWKTVDQAETYTK 324 + G + E YT Sbjct: 315 DLRYIQELLGHSSSKTTEIYTH 336 >gi|298484756|ref|ZP_07002857.1| Site-specific recombinase, phage integrase family [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298160725|gb|EFI01745.1| Site-specific recombinase, phage integrase family [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 319 Score = 113 bits (282), Expect = 5e-23, Method: Composition-based stats. Identities = 52/276 (18%), Positives = 106/276 (38%), Gaps = 31/276 (11%) Query: 84 WGSLA-VNSRISFESYFDQIIRKSGDF---DYRKITTKHI---RSGVESRKHTPSSAIQF 136 + +L +R ++++ G D+R++T H+ R+ +E R ++ + Sbjct: 33 FANLDNPRTRRAYQNDLTDFCSFIGLASADDFRQVTRSHVLAWRADLEQRGLAGATIRRK 92 Query: 137 LTSMRVLFKWAVRQE-YVAINPCLSVERPKRKT-EGIRPWTKED-----MQQFKSFWSEG 189 L ++ LF + NP V+RP+ +T EG P + ++ + +G Sbjct: 93 LAALASLFDHLLDNNAVAGGNPVHGVKRPRIETNEGKTPALGDHQAKQLLEAPDTETLKG 152 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTII-TVELPDGFMKLLA 246 + R LLY GLR ++ + L + I ++ G+ I + L + + Sbjct: 153 LRDRAILAVLLYHGLRREEAAQLTTGDLQERRGIKHLRVHGKGSKIRFLPLHPMAAERIH 212 Query: 247 M---TPIGKET----FFINNDKQ----KMNATQFSIWFKAKATKAGV---NKSAHGVRKF 292 + ++T F + + A +A A KAG+ + HG+R Sbjct: 213 AYLEQDVERDTAPGPLFRSLRGTTTGAGITANGIYTVVEAYAKKAGIVVEHLGVHGLRAT 272 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 +AT + + A ++ G + Y + R Sbjct: 273 AATNALEHDADIAKVQMWLGHANISTTRLYDRRGQR 308 >gi|327398855|ref|YP_004339724.1| integrase family protein [Hippea maritima DSM 10411] gi|327181484|gb|AEA33665.1| integrase family protein [Hippea maritima DSM 10411] Length = 370 Score = 113 bits (282), Expect = 5e-23, Method: Composition-based stats. Identities = 59/324 (18%), Positives = 106/324 (32%), Gaps = 18/324 (5%) Query: 29 HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI-SEYRKSAHWGSL 87 HG+R+R + + A S R+ + + +Y A Sbjct: 41 HGKRVRQTVSGTNLQGAKEIEAKIKSELVSGEYYDRRQAKIAFEQFVKEKYLPYAKEKKS 100 Query: 88 AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWA 147 + II K + + + ++ + + P + + MR +F A Sbjct: 101 YNREESLLRLWIFPIIDKKTLNNISPLDIEKVKKEMIKNEKAPRTIEYAIAVMRQVFNKA 160 Query: 148 VRQE-YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS-QPRLAFEFLLYSGLR 205 + Y NP V++PK+ +R TKE+ ++ S + S Q LY+G+R Sbjct: 161 IEWGFYFGANPAAKVKKPKKDNRRMRFLTKEEAEKLLSELKKHSIQVYEMAYLSLYTGMR 220 Query: 206 CSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMT-----PIGKETFFIN 258 + Q + N I +IK K + D LL P F + Sbjct: 221 FGEIANLTWQDIDFQNGIITIKDPKNSESRVAYMTDSLRDLLYAKYKREKPKNSSGFVFH 280 Query: 259 NDKQKMN--ATQFSIWFKAKATKAGV-----NKSAHGVRKFSATISADAGATAHELMATY 311 + + F + G+ H +R A+ A G + + Sbjct: 281 RNGKPYKQIPGTFKTVVRKLGLNDGITDPRDKVVFHTLRHTFASWLAIQGTPIYTIKELM 340 Query: 312 GWKTVDQAETYTKGA-DRIRLGIK 334 G KT+ E Y+ D R ++ Sbjct: 341 GHKTLAMTERYSHLIPDAKREAVE 364 >gi|310815561|ref|YP_003963525.1| phage integrase family protein [Ketogulonicigenium vulgare Y25] gi|308754296|gb|ADO42225.1| phage integrase family protein [Ketogulonicigenium vulgare Y25] Length = 313 Score = 113 bits (282), Expect = 5e-23, Method: Composition-based stats. Identities = 43/280 (15%), Positives = 88/280 (31%), Gaps = 39/280 (13%) Query: 88 AVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGV---ESRKHTPSSAIQF------ 136 A N+ +++ D+ + I + + +PS+ + Sbjct: 19 ARNTLLAYGRDLQDFAAWLARRKLDFLTLDQADIEDYLTFCADQGLSPSTRARRPTRARR 78 Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS------ 190 L+++R LF++A + + NP + ++ + ++++ + S Sbjct: 79 LSAVRQLFRFAFDEGWRTDNPSIRLKGATKARTLPETLNEDEVDRLLDAARAASAARPRE 138 Query: 191 --QPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFMKLLAM 247 + E L +G+R S+ V + + + K G V L + Sbjct: 139 ALRNTCLLELLYATGMRVSELVTLPVAAARGDPRMLLVRGKGGKERLVPLSPPARTAMVE 198 Query: 248 TPIGKET--------------FFINNDK--QKMNATQFSIWFKAKATKAGV---NKSAHG 288 ++T F + + F + K A AG+ S H Sbjct: 199 WLAQRDTEQEALRKAGGQPSRFLFPSHGADGHLTRQHFLVILKDLAVLAGISPARVSPHK 258 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 +R AT GA + G + E YT D+ Sbjct: 259 LRHAFATHLLANGADLRAIQTMLGHADIATTEIYTHVLDQ 298 >gi|254166742|ref|ZP_04873596.1| site-specific recombinase, phage integrase family protein [Aciduliprofundum boonei T469] gi|197624352|gb|EDY36913.1| site-specific recombinase, phage integrase family protein [Aciduliprofundum boonei T469] Length = 279 Score = 113 bits (282), Expect = 5e-23, Method: Composition-based stats. Identities = 47/265 (17%), Positives = 95/265 (35%), Gaps = 19/265 (7%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE----SRKHTP 130 + ++++ + N+ + + ++R IT + RK++ Sbjct: 8 LEKFKEYLRGEKRSENTIKEYAHFISDMLRYF-HKRAEDITPGDLNKYKMYLSTKRKYSK 66 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 +S ++R FK+ ++ ++ PKR + + +++++++ SE Sbjct: 67 NSLYLATKAIRSYFKY------KNLDTAKNLSSPKRPRQMPKYLSEDEVKRLIEASSENP 120 Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPD----GFMKL 244 + L YSGLR S+ C ++ + I + + K V + Sbjct: 121 RDYAIISLLAYSGLRVSELCNLKIEDVDFNERIVYVHSGKGDKDRIVVVSPRVIEALQNY 180 Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302 L E F + K++ Q K A KAG+ K + H +R AT G Sbjct: 181 LYTREDDMEYLFASQKSNKISRVQVFRIVKKYAEKAGIKKEVTPHVLRHTLATTLLRRGV 240 Query: 303 TAHELMATYGWKTVDQAETYTKGAD 327 + G +V + YT D Sbjct: 241 DIRFIQQFLGHSSVATTQIYTHVDD 265 >gi|71042133|pdb|1Z1G|A Chain A, Crystal Structure Of A Lambda Integrase Tetramer Bound To A Holliday Junction gi|71042134|pdb|1Z1G|C Chain C, Crystal Structure Of A Lambda Integrase Tetramer Bound To A Holliday Junction gi|71042141|pdb|1Z1G|B Chain B, Crystal Structure Of A Lambda Integrase Tetramer Bound To A Holliday Junction gi|71042144|pdb|1Z1G|D Chain D, Crystal Structure Of A Lambda Integrase Tetramer Bound To A Holliday Junction Length = 356 Score = 113 bits (282), Expect = 5e-23, Method: Composition-based stats. Identities = 59/343 (17%), Positives = 112/343 (32%), Gaps = 25/343 (7%) Query: 7 LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMS---ALTGSTPKREYINS 63 LPP + R+ Y G+ L A + +G K Sbjct: 12 LPPNLY---IRNNGYYCYRDPRTGKEFGLGRDRRIAITEAIQANIELFSGHKHKPLTARI 68 Query: 64 PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123 TL + Y K + + I++ S I R D ITTK I + + Sbjct: 69 NSDNSVTLHSWLDRYEKILASRGIKQKTLINYXSKIKAIRRGLPDAPLEDITTKEIAAXL 128 Query: 124 ESRKH--TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 +SA +++ F+ A+ + ++ N + K + R E ++ Sbjct: 129 NGYIDEGKAASAKLIRSTLSDAFREAIAEGHITTNHVAATRAAKSEVRRSRLTADEYLKI 188 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE----- 236 +++ S RLA E + +G R D C + + ++ KTG I + Sbjct: 189 YQAAESSPCWLRLAXELAVVTGQRVGDLCEXKWSDIVDGYLYVEQSKTGVKIAIPTALHI 248 Query: 237 ----LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-----NKSAH 287 + +G ET + ++ +++ S +F +G+ + H Sbjct: 249 DALGISXKETLDKCKEILGGETIIASTRREPLSSGTVSRYFXRARKASGLSFEGDPPTFH 308 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 +R + + + G K+ A + DR R Sbjct: 309 ELR-SLSARLYEKQISDKFAQHLLGHKSDTXASQF--RDDRGR 348 >gi|320326565|gb|EFW82616.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv. glycinea str. B076] gi|320331369|gb|EFW87310.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv. glycinea str. race 4] gi|330881323|gb|EGH15472.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv. glycinea str. race 4] Length = 299 Score = 113 bits (282), Expect = 5e-23, Method: Composition-based stats. Identities = 37/259 (14%), Positives = 93/259 (35%), Gaps = 19/259 (7%) Query: 85 GSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIR---SGVESRKHTPSSAIQFLT 138 ++ ++ ++ ++ +K+ + + +H+R + + + S + L+ Sbjct: 16 RQVSPHTLEAYRRDLSKVLAYCQKAQLSSWNDLDIQHLRSFTARQHQQGQSSRSLARMLS 75 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRL 194 ++R +K+ R+ +P + PK + + + Q E + + Sbjct: 76 AVRGFYKYLNREGICQHDPANGLSPPKGERRLPKTLDTDRTAQLLDGGVEDDFLAHRDQA 135 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV--------ELPDGFMKLLA 246 E L SGLR S+ + L ++ G+ V + + ++ L A Sbjct: 136 ILELLYSSGLRLSELTGLNLDQLDLRDGLVQVLGKGSKTRVLPVGSKARQALEIWLPLRA 195 Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAK-ATKAGVNKSAHGVRKFSATISADAGATAH 305 +T + F++ +++ + KA + G N H +R A+ ++ Sbjct: 196 LTNPQDDAVFVSQQGKRLGPRTIQVRLKAAGERELGQNLHPHMLRHSFASHLLESSQDLR 255 Query: 306 ELMATYGWKTVDQAETYTK 324 + G + + YT Sbjct: 256 AVQELLGHADIKTTQIYTH 274 >gi|291527676|emb|CBK93262.1| Site-specific recombinase XerD [Eubacterium rectale M104/1] Length = 306 Score = 113 bits (282), Expect = 5e-23, Method: Composition-based stats. Identities = 41/283 (14%), Positives = 95/283 (33%), Gaps = 28/283 (9%) Query: 70 TLKWLISEYRKSAHWGS-LAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR-- 126 TL+ +I+ Y + + L + ++ Q + + +IT K + + Sbjct: 3 TLETVINNYLEYCNSQKCLDEKTLKAYRIDLRQFSEQISIINITEITPKILEQYIVRLHE 62 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV-ERPKRKTEGIRPWTKEDMQQF--- 182 ++ P + + + S++ LF + ++ + NP + + + ++ F Sbjct: 63 QYKPKTVKRKIASVKALFHYLEYKDILDHNPFNKILIHFRDPVILPKTIPLHTVETFLST 122 Query: 183 ----KSFWSEGSQPRLAF------EFLLYSGLRCSDSCRAGVQHLQ--NNIFSI------ 224 + Q R A E L +G+R S+ C + + + I Sbjct: 123 IYKQRKNAKTSYQKRNALRDAAVAELLFATGMRISELCSLKINDVNLYDGTILIYGKGDK 182 Query: 225 -KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283 + + G + + + FFIN + ++ + A ++ Sbjct: 183 ERRIQIGNEAVINILTEYNDAFDTERQACNNFFINQSGKALSDQSVRRMINKYTSLASID 242 Query: 284 K--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 + + H R AT +A + G +++ E YT Sbjct: 243 QHITPHMFRHTFATSLLEADVDIRYIQEMLGHSSINITEIYTH 285 >gi|296129776|ref|YP_003637026.1| tyrosine recombinase XerD [Cellulomonas flavigena DSM 20109] gi|296021591|gb|ADG74827.1| tyrosine recombinase XerD [Cellulomonas flavigena DSM 20109] Length = 310 Score = 113 bits (282), Expect = 5e-23, Method: Composition-based stats. Identities = 41/272 (15%), Positives = 89/272 (32%), Gaps = 33/272 (12%) Query: 85 GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRK--------HTPSSA 133 LA ++ ++ + + G + +IT + V + +P+SA Sbjct: 20 RGLAAHTLAAYRRDLTRYVAHLHARGRTEPAEITERDAEDYVLVLRTGSDGRAVLSPASA 79 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-----SE 188 + + ++R ++ + + P + + +D+ + Sbjct: 80 ARSVVALRGWHRFLALDGLAPTDAAAELRPPAQPRRLPKAIGVDDVARLLDAAGLGDGPV 139 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKT-QKTGTIITVELPDGFMKL- 244 + R E + +G R S++ V L + +++ K G V + + Sbjct: 140 PLRDRALLELVYSTGARISEAVGLDVDDLDLTPDRGAVRLLGKGGKERVVPVGSYAAQAV 199 Query: 245 ----------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRK 291 LA G F+N +++ + A +AG+ + S H +R Sbjct: 200 DAYLVRGRPALAAAGRGTPAIFLNTRGARLSRQSAWAVLRTAAERAGLAADHLSPHTLRH 259 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYT 323 AT GA + G +V + YT Sbjct: 260 SFATHLLAGGADVRVVQELLGHASVATTQIYT 291 >gi|66043455|ref|YP_233296.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv. syringae B728a] gi|75503929|sp|Q500B4|XERC_PSEU2 RecName: Full=Tyrosine recombinase xerC gi|63254162|gb|AAY35258.1| Phage integrase:Phage integrase, N-terminal SAM-like [Pseudomonas syringae pv. syringae B728a] Length = 299 Score = 113 bits (282), Expect = 5e-23, Method: Composition-based stats. Identities = 37/259 (14%), Positives = 93/259 (35%), Gaps = 19/259 (7%) Query: 85 GSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIR---SGVESRKHTPSSAIQFLT 138 ++ ++ ++ ++ +K+ + + +H+R + + + S + L+ Sbjct: 16 RQVSPHTLEAYRRDLGKVLAYCQKAQVSSWSDLDIQHLRSFTARQHQQGQSSRSLARMLS 75 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRL 194 ++R +K+ R+ +P + PK + + + Q E + + Sbjct: 76 AVRGFYKYLNREGICQHDPANGLSPPKGERRLPKTLDTDRAAQLLDGGVEDDFLAHRDQA 135 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV--------ELPDGFMKLLA 246 E L SGLR S+ + L ++ G+ V + + ++ L A Sbjct: 136 ILELLYSSGLRLSELTGLNLDQLDLRDGLVQVLGKGSKTRVLPVGSKARQALEVWLPLRA 195 Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAK-ATKAGVNKSAHGVRKFSATISADAGATAH 305 +T + F++ +++ + KA + G N H +R A+ ++ Sbjct: 196 LTNPQDDAVFVSQQGKRLGPRAIQVRLKAAGERELGQNLHPHMLRHSFASHLLESSQDLR 255 Query: 306 ELMATYGWKTVDQAETYTK 324 + G + + YT Sbjct: 256 AVQELLGHADIKTTQIYTH 274 >gi|319957731|ref|YP_004168994.1| tyrosine recombinase xerd subunit [Nitratifractor salsuginis DSM 16511] gi|319420135|gb|ADV47245.1| tyrosine recombinase XerD subunit [Nitratifractor salsuginis DSM 16511] Length = 276 Score = 113 bits (282), Expect = 5e-23, Method: Composition-based stats. Identities = 38/248 (15%), Positives = 81/248 (32%), Gaps = 18/248 (7%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLF 144 L+ S S+ + Q+ + GD K+ T+ I + + + + + L S+ Sbjct: 20 KGLSPKSIDSYLTDLRQLAEEQGD--LLKLETESILAFLSRFDNK-RTLNRKLASINAFV 76 Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ----FKSFWSEGSQPRLAFEFLL 200 + R++ + + + + + E+++ G + FL Sbjct: 77 NFCHREKLGTS--RVKIPMARVPKTLPKYLSHEEIEAGLRYIDRSTPIGRRDYALILFLY 134 Query: 201 YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG----FMKLLAMTPIGKETFF 256 SG R S++ L + I+ K V L + L + I + Sbjct: 135 ASGCRISEALAVQRGDLVDGWLKIRYAKGARERMVPLAPAALKALEEHLKESDIASPYLW 194 Query: 257 INNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTV 316 +N + ++ + + S H +R AT GA + G ++ Sbjct: 195 LNYRGEPLSRVSAYKIVRKY-----LGVSPHVLRHSFATALILGGADLRVVQELLGHSSL 249 Query: 317 DQAETYTK 324 + YT Sbjct: 250 ITTQIYTH 257 >gi|225351382|ref|ZP_03742405.1| hypothetical protein BIFPSEUDO_02976 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225157726|gb|EEG71009.1| hypothetical protein BIFPSEUDO_02976 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 308 Score = 113 bits (282), Expect = 5e-23, Method: Composition-based stats. Identities = 42/274 (15%), Positives = 80/274 (29%), Gaps = 34/274 (12%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK-----HTPSSAIQFLTS 139 L+ N+R ++ ++ + R + I H SS + + Sbjct: 18 RGLSENTRKAYRGDVEECLLALERLRCRDLNEVTIEDLRMWMAESSKNHAKSSMARKTVA 77 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----------- 188 +R F W +P ++ PK ++ +Q E Sbjct: 78 VRGFFAWTHEHGVTTTDPACALMTPKIPDTLPDVLSESQAEQLMERVDEDGETSQPKERT 137 Query: 189 ------GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGF 241 + E L +G+R ++ V + +N T K + Sbjct: 138 MKQQAIELRDAAMLELLYATGMRVAELVGLDVPDVVFSNRTVKVTGKGNKQRVMPFGAPA 197 Query: 242 MKLLAMTPIGKE----------TFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVR 290 K + F+ ++++ A AGV + S H +R Sbjct: 198 QKAIRRWLDDGRPLLVGEQSAAALFLGRQGKRIDQRMVRRVVHECARDAGVPDISPHALR 257 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK 324 +AT D GA E+ G ++ + YT Sbjct: 258 HSAATHMLDGGADLREVQELLGHSSLKTTQRYTH 291 >gi|169630285|ref|YP_001703934.1| site-specific tyrosine recombinase XerC [Mycobacterium abscessus ATCC 19977] gi|169242252|emb|CAM63280.1| Tyrosine recombinase XerC [Mycobacterium abscessus] Length = 304 Score = 113 bits (282), Expect = 5e-23, Method: Composition-based stats. Identities = 41/283 (14%), Positives = 99/283 (34%), Gaps = 29/283 (10%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFES----YFDQIIRKSGDFDYRKITTKHIRSGVES 125 L ++ E+ + +V+++ ++ FD + + + ++ +RS + + Sbjct: 5 LAAILDEFAEHLALERGRSVHTQRAYRGDLTLLFDHLSASNPEATLADLSLPVLRSWLGA 64 Query: 126 RKHT---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ- 181 + S+ + +++++ WA R+ + +P + +++PK + ++ Sbjct: 65 QARQGAARSTVARRTSAVKIFTAWATRRGLLPTDPAIRLQQPKSRRTLPAVLRQDQAAAA 124 Query: 182 -------FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTII 233 + + RL E L +G+R S+ C + + ++ K Sbjct: 125 MEAAHSGAEQDDPMALRDRLIVEMLYATGIRVSELCGLDIDDIDRPRKVLRVLGKGDKER 184 Query: 234 TVELPDGFMKLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAK--ATKAG 281 TV D L+ P + ++++ Q A Sbjct: 185 TVPFGDPAADALSAWLDRGRPHLAVPASGAALLLGARGRRVDPRQVRTVVHQTMSAVPGA 244 Query: 282 VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 + HG+R +AT + GA + G T+ + YT Sbjct: 245 PDIGPHGLRHSAATHLLEGGADLRVVQELLGHSTLATTQLYTH 287 >gi|320352610|ref|YP_004193949.1| integrase family protein [Desulfobulbus propionicus DSM 2032] gi|320121112|gb|ADW16658.1| integrase family protein [Desulfobulbus propionicus DSM 2032] Length = 387 Score = 113 bits (282), Expect = 5e-23, Method: Composition-based stats. Identities = 46/268 (17%), Positives = 92/268 (34%), Gaps = 11/268 (4%) Query: 65 RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124 +++ T L Y + + E+YF + + G IT I + Sbjct: 97 QRQEMTFADLFEIYLE--RHAKPRKKTWREDETYFKRHLASFGKKRLSTITKGDIAAIHS 154 Query: 125 S-RKHTPSSAIQFLTSMRVLFKWAVRQEYVAI-NPCLSVERPKRKTEGIRPWTKEDMQQF 182 S K P+ A + L + + + NPC +++ + R + +++ +F Sbjct: 155 SIGKDRPTHANRVLALVSSIIGRGIEYGLYESLNPCRGIKKFSEQAR-DRFLSGDELARF 213 Query: 183 KSFWS--EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELP 238 S R F L +G R ++ L I+ I K GT V L Sbjct: 214 FQALEQEPNSTARDFFLVALLTGARRANVLSMRWSDLDLKGQIWRIAETKNGTPQNVPLV 273 Query: 239 DGFMKLLAMTPIGKETFFIN-NDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATI 296 +++L +FF+ + + + ++ AG+ H +R+ + Sbjct: 274 GPVLEILQDRRKATSSFFVFPGPGKTGHLVEPKKAWQRICQAAGIKGARIHDLRRTMGSW 333 Query: 297 SADAGATAHELMATYGWKTVDQAETYTK 324 A GA+ + + K+ Y + Sbjct: 334 QAKTGASLPIIGKSLNHKSASTTSIYAR 361 >gi|297181069|gb|ADI17268.1| site-specific recombinase xerd [uncultured alpha proteobacterium HF0070_17D04] Length = 361 Score = 113 bits (282), Expect = 5e-23, Method: Composition-based stats. Identities = 50/277 (18%), Positives = 98/277 (35%), Gaps = 24/277 (8%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRKH 128 L++E+ ++ LA NS ++E + + +R + Sbjct: 62 DQLVTEFLQAMAADRGLAANSIAAYERDLASCLESLSQAGRHFDSCDADDLRCLLAEWTL 121 Query: 129 T---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + S + L+++R + W V + +PC ++ PK+ + ++E++ + Sbjct: 122 SGLAARSVARRLSALRQMMAWLVEERVRPDDPCRWIDNPKQPAALPKSLSEEEITALITA 181 Query: 186 WSEGSQPR------LAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELP 238 + E L +GLR S+ V + + + I T K G V + Sbjct: 182 ARALAPAAEALRMTAMLELLYATGLRVSELVSLPVDQFRRELEAVIVTGKGGKERLVAMG 241 Query: 239 DGFMKLLAMTPIGKETF--FINN------DKQKMNATQFSIWFKAKATKAGVN---KSAH 287 A ++ F+ + + ++ QF+ K AG++ S H Sbjct: 242 TPARDATAAWMAARDATEAFVTSPYLFPFRESHVSRQQFAAALKRVGAAAGIDPRRVSPH 301 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 VR AT + GA L G + + YTK Sbjct: 302 VVRHSFATHMLNRGADLRGLQMLLGHADISTTQIYTK 338 >gi|150004015|ref|YP_001298759.1| putative integrase [Bacteroides vulgatus ATCC 8482] gi|149932439|gb|ABR39137.1| putative integrase [Bacteroides vulgatus ATCC 8482] Length = 200 Score = 113 bits (282), Expect = 5e-23, Method: Composition-based stats. Identities = 39/203 (19%), Positives = 76/203 (37%), Gaps = 20/203 (9%) Query: 154 AINPCLSVERPKRKTEGIR--PWTKEDMQQFKSFWSEGSQP--RLAFEFLLYSGLRCSDS 209 + +PC + K ++ +R + E++Q+ + + P R AF F LY GLR + Sbjct: 4 SKDPCKDIT-CKVDSQMLRKDVLSPEEVQKLMACHYDNENPTVRQAFIFCLYCGLRFCNV 62 Query: 210 CRAGVQHLQ--NNIFSIKTQKTG-----TIITVELPDGFMKLLAMTPIGKETFFINNDKQ 262 +++ N + + K + + + L DG + ++ P K + Sbjct: 63 KDLTFKNVDYANRLLKFEQSKAKEHSASSGVVIPLNDGLLSIIGEAPTDKNCLIFDLS-- 120 Query: 263 KMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320 K +AG++K S H R A + GA + + G + E Sbjct: 121 --TYESCCKSVKRWVKRAGIDKHISWHLARHSFAVNILNNGANIKTVASLLGHSGLKHTE 178 Query: 321 TYTKGADRIRLGIKNSRRISSVV 343 YT+ D +L + + + Sbjct: 179 KYTRAVD--KLKEEAINSLPELK 199 >gi|305666658|ref|YP_003862945.1| tyrosine type site-specific recombinase [Maribacter sp. HTCC2170] gi|88707463|gb|EAQ99707.1| tyrosine type site-specific recombinase [Maribacter sp. HTCC2170] Length = 363 Score = 113 bits (282), Expect = 5e-23, Method: Composition-based stats. Identities = 43/258 (16%), Positives = 89/258 (34%), Gaps = 9/258 (3%) Query: 76 SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQ 135 EY A ++ ++ S+F+ I + I IR+ ++ H S Sbjct: 96 EEYLLKLELKRYANSTVRTYVSFFELFINHYKYKELNAINESDIRAFLQKLIHRNVSNSY 155 Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA 195 S+ + K+ N +ERP+++++ + +K+++ + + R Sbjct: 156 LNQSINAI-KFYYEVVLGMPNRFYEIERPRKESKLPKVISKDEILTIIEN-TNNIKHRCI 213 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTIITVELPDGFMKLLAMTPIG-- 251 + L SGLR S+ + + + + K L + L + Sbjct: 214 VQLLYGSGLRRSELLNLKINDVDSKRMLIHVSDSKGNKDRQTLLSKTCLHDLRLYFTKYR 273 Query: 252 -KETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELM 308 + F +K + K+ A +A + + H +R AT ++G + Sbjct: 274 PQVYLFEGRYGKKYSGESVLSIVKSAAERARIRVRVTPHVLRHSFATHLLESGTDLRHIQ 333 Query: 309 ATYGWKTVDQAETYTKGA 326 G + E YT A Sbjct: 334 VLLGHGSTKTTEIYTHVA 351 >gi|28871740|ref|NP_794359.1| site-specific recombinase, phage integrase family [Pseudomonas syringae pv. tomato str. DC3000] gi|66044722|ref|YP_234563.1| Phage integrase:Phage integrase, N-terminal SAM-like [Pseudomonas syringae pv. syringae B728a] gi|302185971|ref|ZP_07262644.1| Phage integrase:Phage integrase, N-terminal SAM-like protein [Pseudomonas syringae pv. syringae 642] gi|28854992|gb|AAO58054.1| site-specific recombinase, phage integrase family [Pseudomonas syringae pv. tomato str. DC3000] gi|63255429|gb|AAY36525.1| Phage integrase:Phage integrase, N-terminal SAM-like [Pseudomonas syringae pv. syringae B728a] Length = 320 Score = 113 bits (282), Expect = 5e-23, Method: Composition-based stats. Identities = 52/277 (18%), Positives = 102/277 (36%), Gaps = 32/277 (11%) Query: 84 WGSLA-VNSRISFESYFDQIIRKSGDF---DYRKITTKHI---RSGVESRKHTPSSAIQF 136 + +L +R ++++ + G ++R +T H+ R+ +E R ++ + Sbjct: 33 FANLDNPRTRRAYQNDLEDFCSFIGLASADEFRVVTRSHVLAWRAHLEHRGLAGATIRRK 92 Query: 137 LTSMRVLFKWAVRQE-YVAINPCLSVERPKRKT-EGIRPWTKED-----MQQFKSFWSEG 189 L ++ LF + NP V+RP+ ++ EG P + ++ +G Sbjct: 93 LAALASLFDHLLENNAIAGGNPVHGVKRPRIESNEGKTPALGDHQAKALLEAPDETTLKG 152 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKT-QKTGTIITVELPDG------ 240 + R LLY GLR ++ V + + I +K K G + + L Sbjct: 153 QRDRALLAVLLYHGLRREEAALLQVSDIQERRGIQHLKVHGKGGKVRYLPLHPIAAGRIH 212 Query: 241 --FMKLLAMTPIGKETFFINNDKQ----KMNATQFSIWFKAKATKAGV---NKSAHGVRK 291 K F+ + + A A A KAG+ HG+R Sbjct: 213 QYLENSEHHLAERKVPLFMPLRGKLTGAGITANGIYAVVTAYAKKAGIEVDGLGVHGLRA 272 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 +AT + + A ++ A G + + Y + +R Sbjct: 273 TAATNALEHEADIAKVQAWLGHANISTTKIYDRRENR 309 >gi|300726218|ref|ZP_07059671.1| tyrosine recombinase XerC [Prevotella bryantii B14] gi|299776415|gb|EFI72972.1| tyrosine recombinase XerC [Prevotella bryantii B14] Length = 293 Score = 113 bits (282), Expect = 5e-23, Method: Composition-based stats. Identities = 39/275 (14%), Positives = 91/275 (33%), Gaps = 24/275 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISF-------ESYFDQIIRKSGDFDYRKITTKHIRSGVES 125 +I ++ + + + + S+ +SYF+ + + + Sbjct: 2 IIEDFLDYLQFELNRSERTVQSYGDDLRAFQSYFEGLDDHLSWESVDSDVVRGWIELMMD 61 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + ++ +S + L+++R +++A+ ++ V +P ++ PKR + + +M Sbjct: 62 KGNSATSINRRLSALRTFYRFALSRKRVESDPVHMIKGPKRGKPLPQFLKENEMNALLDT 121 Query: 186 WSEGS-----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPD 239 G + R +G+R S+ + +K T K + + Sbjct: 122 AMHGESFYDVRDRTIIMTFYETGIRLSELIGLDDNDVDFQKGELKVTGKRNKQRIIPFGN 181 Query: 240 GFMKLLAM--------TPIGKETFFINNDKQKMNATQFSIWFKA--KATKAGVNKSAHGV 289 L + F++N ++N Q + +S H + Sbjct: 182 ELASALTIYMKLRDEFIGNTSLALFVSNKGCRLNGNQVRYLVQKNLSRVSTLKKRSPHVL 241 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 R AT + A L G ++ E YT Sbjct: 242 RHTFATAMLNHEAGLESLKKLLGHASLSTTEIYTH 276 >gi|289428621|ref|ZP_06430304.1| phage integrase, N-terminal SAM domain protein [Propionibacterium acnes J165] gi|295131071|ref|YP_003581734.1| site-specific recombinase, phage integrase family [Propionibacterium acnes SK137] gi|289158019|gb|EFD06239.1| phage integrase, N-terminal SAM domain protein [Propionibacterium acnes J165] gi|291376498|gb|ADE00353.1| site-specific recombinase, phage integrase family [Propionibacterium acnes SK137] Length = 300 Score = 113 bits (282), Expect = 5e-23, Method: Composition-based stats. Identities = 41/277 (14%), Positives = 93/277 (33%), Gaps = 27/277 (9%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSGVESRKHTPS 131 + ++ + N+ + + + GD +I T +R+ + + + Sbjct: 7 VEDFCGHLSALRRSPNTIRGYRADLIDLMGHAHSHGDDTLGRIGTSQVRAWLADTRVAGA 66 Query: 132 SAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI---------RPWTKEDM 179 SA + ++ RV F+WA + ++ +P ++ K + Sbjct: 67 SAATMQRRWSAARVFFRWAANEGLISADPTTALNSAKVPKRLPATLGVDQARHILDEAVA 126 Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELP 238 Q G++ E L GLR + C + + + ++K T K TV + Sbjct: 127 QARHDESPHGARDAAILEVLYGGGLRVGELCGLDLGDVDRSRRTVKVTGKGDKERTVPMG 186 Query: 239 DGFMKLLAMT---------PIGKETFFINNDKQKMNATQFSIWFK--AKATKAGVNKSAH 287 ++ + P + F+ ++++ +A + H Sbjct: 187 APALRAIDTWLPRREEWVGPHSGQALFLGARGRRIDQRVVRRVVHTHLRAEPDSPDLGPH 246 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 G+R AT + GA + G +++ + YT Sbjct: 247 GLRHAMATHLLEGGADLRTVQDILGHESLATTQIYTH 283 >gi|71734696|ref|YP_277090.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv. phaseolicola 1448A] gi|123761139|sp|Q48C04|XERC_PSE14 RecName: Full=Tyrosine recombinase xerC gi|71555249|gb|AAZ34460.1| tyrosine recombinase XerC [Pseudomonas syringae pv. phaseolicola 1448A] Length = 299 Score = 113 bits (282), Expect = 5e-23, Method: Composition-based stats. Identities = 37/259 (14%), Positives = 93/259 (35%), Gaps = 19/259 (7%) Query: 85 GSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIR---SGVESRKHTPSSAIQFLT 138 ++ ++ ++ ++ +K+ + + +H+R + + + S + L+ Sbjct: 16 RQVSPHTLEAYRRDLSKVLAYCQKAQRSSWNDLDIQHLRSFTARQHQQGQSSRSLARMLS 75 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRL 194 ++R +K+ R+ +P + PK + + + Q E + + Sbjct: 76 AVRGFYKYLNREGICQHDPANGLSPPKGERRLPKTLDTDRTAQLLDGGVEDDFLAHRDQA 135 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV--------ELPDGFMKLLA 246 E L SGLR S+ + L ++ G+ V + + ++ L A Sbjct: 136 ILELLYSSGLRLSELTGLNLDQLDLRDGLVQVLGKGSKTRVLPVGSKARQALEIWLPLRA 195 Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAK-ATKAGVNKSAHGVRKFSATISADAGATAH 305 +T + F++ +++ + KA + G N H +R A+ ++ Sbjct: 196 LTNPQDDAVFVSQQGKRLGPRTIQVRLKAAGERELGQNLHPHMLRHSFASHLLESSQDLR 255 Query: 306 ELMATYGWKTVDQAETYTK 324 + G + + YT Sbjct: 256 AVQELLGHADIKTTQIYTH 274 >gi|312792896|ref|YP_004025819.1| integrase family protein [Caldicellulosiruptor kristjanssonii 177R1B] gi|312180036|gb|ADQ40206.1| integrase family protein [Caldicellulosiruptor kristjanssonii 177R1B] Length = 392 Score = 113 bits (282), Expect = 5e-23, Method: Composition-based stats. Identities = 51/323 (15%), Positives = 110/323 (34%), Gaps = 56/323 (17%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131 WL +Y+K ++ ++ +ES + I G + + + +H++ + + KH Sbjct: 77 WL-HQYKK----NQISESTFDDYESIIKNHINPVLGKYKLKDLRPEHLQ-MLYNEKHKAG 130 Query: 132 SAIQFLTSMRVLF----KWAVRQEYVAINPCLSVERPKRKTE-GIRPWTKEDMQQFKSFW 186 + + + + V+ A++ + N + PK +E ++ T E+ ++F Sbjct: 131 LSTKRIKHIHVILHSALNQAIKNGLIVRNVSEATTLPKNTSEKEMKVLTVEEQKRFLQVL 190 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQ-------------KTGT 231 EG + + AF L +G+R + + + N +I+ KT T Sbjct: 191 -EGERLKPAFVLALTTGMRLGEILALKWKDVDLENKKITIRNSVRRIKNRNEQSEIKTKT 249 Query: 232 IIT------------VELPD----------GFMKLLAMTP----IGKETFFINNDKQKMN 265 ++ + LPD + + F + Sbjct: 250 VLVLKEPKTENSGRIIPLPDVAYQELVNFKLLQEEEKRQAGSSYVDSGFVFTTKVGTPIE 309 Query: 266 ATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324 F F KAG+N + H +R AT +A + G + Y+ Sbjct: 310 PRNFLRTFYRITEKAGLNINFHALRHTFATRLLEANTNPKVVQELLGHSDISTTLNIYSH 369 Query: 325 GA-DRIRLGIKNSRRISSVVDSD 346 D + I+ + + ++ Sbjct: 370 VLFDTKQKAIEEIDNLMKNLTNE 392 >gi|146276169|ref|YP_001166328.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17025] gi|145554410|gb|ABP69023.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17025] Length = 413 Score = 113 bits (282), Expect = 5e-23, Method: Composition-based stats. Identities = 62/353 (17%), Positives = 118/353 (33%), Gaps = 33/353 (9%) Query: 15 RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTP----KREYINSPRKKPTT 70 R RH + G + L + A +A G P K P Sbjct: 43 RYRHAGVHRRMTLGGFPVLSLAQARQKA-REALAAASEGRDPAEEVKAAKAPKPENDRDK 101 Query: 71 LKWLISEYRK-SAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RK 127 + +I + K A A + F+ +++ K G+ D R IT + + ++ + Sbjct: 102 VATVIDLFLKRHASRNRRADDVAAQFQR---EVLGKWGERDIRSITKRDVIDVLDGVVDR 158 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186 +P SA + + LF WA ++ + +NP V+ P + R T E+++ Sbjct: 159 GSPISANRLRAHLNTLFNWAKSRDIIEVNPLDGVKPPAPEKPRDRVLTNEEIRLLWKVSG 218 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI--KTQKTGTIITVELPDGFMKL 244 G + LL +G R + + + +++ K G + L ++ Sbjct: 219 KMGYPFGDIYRLLLLTGQRLREVAELPWREIDGATWTLPGPRSKNGDEHVIPLSPEAREI 278 Query: 245 LAMTPIGKETFFINNDKQKMN-----ATQFSIWFKAKATK---AG------VNKSAHGVR 290 + P F ++ + A + AG + H +R Sbjct: 279 IEAAPKVGRFVFSTTGLTPVSGFTRAKERLDGLMADAANEDLPAGAEPVTVPPFTIHDLR 338 Query: 291 KFSATISADAGATAHELMATYGWKTVD---QAETYTK--GADRIRLGIKNSRR 338 + +AT A H + A ++ A Y + AD R ++ R Sbjct: 339 RTAATGMAGLRFPPHVVEAVLNHRSGTRRGVAGVYNRFDYADEKRQALETWAR 391 >gi|240146968|ref|ZP_04745569.1| phage integrase [Roseburia intestinalis L1-82] gi|257200880|gb|EEU99164.1| phage integrase [Roseburia intestinalis L1-82] Length = 360 Score = 113 bits (282), Expect = 5e-23, Method: Composition-based stats. Identities = 62/316 (19%), Positives = 108/316 (34%), Gaps = 30/316 (9%) Query: 54 STPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYR 112 +++ +NS R L + Y + L + + + II G+ Sbjct: 40 EYERQKKLNSSRSMDMKLSEFMEVYFEDKQ-NELKERTMKNKRYMMEQHIIPYFGNQMMS 98 Query: 113 KITTKHIRSGVESRKHTP--SSAIQFLTS-MRVLFKWAVRQEYVAINPCLSVER-PKRKT 168 +I+ I + S ++ + + + LF A R + NPC V+R + Sbjct: 99 EISASQIIQWQNEMQTKGFSESYLRMIQNQLTSLFTHASRIYDLHTNPCKKVKRMGNSDS 158 Query: 169 EGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKT 226 + WT E+ QQF G++ L FE L ++G R + + + N SI Sbjct: 159 RSLDFWTTEEYQQFIQTIEPGTRYYLIFEILFWTGCRIGELLALTPADINFERNQISITK 218 Query: 227 Q-------------KTGTII-TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIW 272 KT + T+E+P+ + + G N + Sbjct: 219 TYYRTERKDVITEPKTKQSVRTIEIPEFLKQEIKQFIEGHYGMPENERLFPIVQEAVQHK 278 Query: 273 FKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIR 330 K KAGV K H +R + G + G K + TY Sbjct: 279 MKQNMVKAGVKKIRVHDLRHSHVAYLINKGIEPILIKERLGHKDIRITLNTYGH------ 332 Query: 331 LGIKNSRRISSVVDSD 346 L RRI+ ++D++ Sbjct: 333 LYPNQQRRIADLLDNE 348 >gi|238760177|ref|ZP_04621324.1| Tyrosine recombinase [Yersinia aldovae ATCC 35236] gi|238701613|gb|EEP94183.1| Tyrosine recombinase [Yersinia aldovae ATCC 35236] Length = 263 Score = 113 bits (282), Expect = 5e-23, Method: Composition-based stats. Identities = 40/237 (16%), Positives = 81/237 (34%), Gaps = 16/237 (6%) Query: 104 RKSGDFDYRKITTKHIRSGVESRKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160 + G ++ + +RS V K SS L+++R W V Q + NP Sbjct: 5 EQMGLAHWQTLDAAQVRSLVSRSKRAGLHASSLALRLSALRSFLDWMVSQGVLQANPARG 64 Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL 217 V P+ + +++ + + R E + +GLR S+ +H+ Sbjct: 65 VSTPRSGRHLPKNIDVDEVDKLLDIDLNDPLAVRDRAMLEVMYGAGLRLSELVGMNCKHV 124 Query: 218 QNNIFSIKTQKTGT--------IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF 269 + G+ V+ +++L + + F+ N ++++A Sbjct: 125 DLASGEVWVMGKGSKERKLPIGRTAVKWLAHWLELRELFEPQDDAIFLANTGKRISARNV 184 Query: 270 SIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 F K GV + H +R AT ++ + G + + YT Sbjct: 185 QKRFAEWGVKQGVSSHIHPHKLRHSFATHMLESSGDLRAVQELLGHANLTTTQIYTH 241 >gi|228923867|ref|ZP_04087144.1| Site-specific recombinase, phage integrase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228948859|ref|ZP_04111134.1| Site-specific recombinase, phage integrase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228810821|gb|EEM57167.1| Site-specific recombinase, phage integrase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228835666|gb|EEM81030.1| Site-specific recombinase, phage integrase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 322 Score = 113 bits (282), Expect = 5e-23, Method: Composition-based stats. Identities = 46/284 (16%), Positives = 92/284 (32%), Gaps = 28/284 (9%) Query: 86 SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES---RKHTPSSAIQFLTSMRV 142 + + F +R+ IT KH++ + R+ P++ +++++ Sbjct: 41 GFRKRTIDDYTKLFHYFMRELNIEKVEIITAKHVQMYINKLLSRELAPATINIRISALKS 100 Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRLAFEF 198 +FK Q Y+ NP + + + I +++ G + A Sbjct: 101 VFKRLHEQGYIKSNPAVDFVKLRTDEAPIFTLNNNQIKRLFRVVDKTTYAGYRDYCAMLL 160 Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSIKTQ----KTGTIITVELPDGFMKLLAMTPI---- 250 +L+ GLR ++ + L + +I K V + + L M Sbjct: 161 MLHCGLRVNEVNQLEANDLDFDNLTIMLSGAKNKNRKTRAVPMTKKIAEELRMLIDESRE 220 Query: 251 ---GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK----SAHGVRKFSATISADAGAT 303 G F+ D ++ AG++K S H +R AT G + Sbjct: 221 YFEGTTNVFLTQDGNSIDNDLLRKRMYRYGQLAGLSKECRPSPHSLRHTFATNFLRNGGS 280 Query: 304 AHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347 + LM G + Y RL + + V + + Sbjct: 281 VNALMRIMGHADITTTMRYV------RLNDEAVKEQYEKVAAKN 318 >gi|222529021|ref|YP_002572903.1| integrase family protein [Caldicellulosiruptor bescii DSM 6725] gi|222455868|gb|ACM60130.1| integrase family protein [Caldicellulosiruptor bescii DSM 6725] Length = 400 Score = 113 bits (282), Expect = 5e-23, Method: Composition-based stats. Identities = 55/317 (17%), Positives = 106/317 (33%), Gaps = 48/317 (15%) Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVE 124 TTLK ++ + +L ++ + Y ++ I G + + + +H+++ Sbjct: 69 PAKTTLKDWLNTWLWEYKKQTLRPSTFKDYLCYIERHINPAIGHYKLKDLRPEHLQALYN 128 Query: 125 SR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE-GIRPWTKEDMQ 180 ++ + S+ Q T + A++ V N + PK K + IR + E+ Q Sbjct: 129 AKYQEGLSISTIKQIHTVLHSALDQALKNGLVNRNVSEATTLPKGKPKREIRILSLEEQQ 188 Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQ----------- 227 +F + EG + + AF L SGLR + + + ++ ++ Sbjct: 189 RFIAAL-EGERLKTAFLVELASGLRIGELLALRWKDVNFKDGYIEVRRSLQRVRIFDGGN 247 Query: 228 -----------KTGT-IITVELPD------------GFMKLLAMTPI--GKETFFINNDK 261 KT V LP + L + + F Sbjct: 248 SKKTALAFQEPKTEAGKRIVPLPPVIIEELKQHRKKQLEEKLKAGALYEDNDLVFATELG 307 Query: 262 QKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQA 319 ++ F F KAG++KS H +R AT +A + G K + Sbjct: 308 TPIDPRNFERLFYRIREKAGLDKSVNFHALRHTYATRLLEANEHPKVVQELLGHKDISTT 367 Query: 320 -ETYTKGADRIRLGIKN 335 Y+ I+ Sbjct: 368 LNIYSHVMPEIKKAAAM 384 >gi|229164788|ref|ZP_04292620.1| DNA integration/recombination/invertion protein [Bacillus cereus R309803] gi|228618691|gb|EEK75685.1| DNA integration/recombination/invertion protein [Bacillus cereus R309803] Length = 370 Score = 113 bits (282), Expect = 5e-23, Method: Composition-based stats. Identities = 44/269 (16%), Positives = 88/269 (32%), Gaps = 36/269 (13%) Query: 91 SRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH---TPSSAIQFLTSMRVLFKW 146 + + Y + +II G+ K+T+ H+++ V S + + + + +R + Sbjct: 86 TAKVLKGYLNSRIIPSLGNIKLAKLTSLHMQNYVNSLRDDGLKRGTIEKIIKFIRNSLEH 145 Query: 147 AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRC 206 A+ E + N + PK E + W ++++Q F +G + + F L +G+R Sbjct: 146 AIDLELITKNVATKTKLPKGDKEELTVWNEQEVQLFLKAAQDG-RYSMVFHMALVTGMRQ 204 Query: 207 SDSCRAGVQHLQNNIFSIK--------------TQKTGTIITVELPDG-----FMKLLAM 247 + + + + KT + + L K A+ Sbjct: 205 GELLGLRWKDVDLEKGHLTISQTLSHDGKTFLLGGKTKSSLRKILLPASTVAGLKKHRAV 264 Query: 248 TPIGK----------ETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATI 296 K + +N A KA V K H +R AT+ Sbjct: 265 VLKEKLSQGEEYQDNDLVMCTPSGTPINPANVRRSLNALIRKAAVPKIRFHDLRHTHATL 324 Query: 297 SADAGATAHELMATYGWKTVDQA-ETYTK 324 G + G + +TY+ Sbjct: 325 LLAKGVNVKVISERLGHSNIKITLDTYSH 353 >gi|170723132|ref|YP_001750820.1| integrase family protein [Pseudomonas putida W619] gi|169761135|gb|ACA74451.1| integrase family protein [Pseudomonas putida W619] Length = 340 Score = 113 bits (282), Expect = 5e-23, Method: Composition-based stats. Identities = 58/331 (17%), Positives = 113/331 (34%), Gaps = 18/331 (5%) Query: 3 PSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN 62 PS+R + R R+ + + + + + G + +++ Sbjct: 8 PSVRYHSAMAYYEKRGDAWRAQIRRKGYPTLSATF-DTKAEAQRWAAEIEGDMSRARFVD 66 Query: 63 SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG 122 + TTL + Y + S ++ K I + + + Sbjct: 67 MREAESTTLDEALDRYL--SEVTSTKKGAKQEQVRIKKWKEHKLASKGLAAIRSSDMAAY 124 Query: 123 VES-RKHTPSSAIQFLT--SMRVLFKWAVRQEYVA--INPCLSVERPKRKTEGIRPWTKE 177 ++ K S+A L + LF A ++ + NPC ++ PK E R T Sbjct: 125 RDAELKEGKSTATVRLNLAVISHLFTVATKEWGIEGLTNPCRAIRMPKGSKERDRRPTPA 184 Query: 178 DMQQFKSFWSEGSQPRLAF-EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236 ++ + + F E + + +R S+ H++ + ++ K G V Sbjct: 185 ELTALYKAAGQMNAQLPVFIELAVETAMRRSELLMLRRDHVRGKVAYLEDTKNGERRAVP 244 Query: 237 LPDGFMKLLAM--TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFS 293 L + LL TPIG +F + S +F AG+ H +R + Sbjct: 245 LSSRAIALLEGLPTPIGGGRYF------NLALNTISNYFPRACAAAGIEGLRLHDLRHEA 298 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTK 324 + + G T E+ + G KT+ + YT Sbjct: 299 TSRFFERGFTMMEVASITGHKTLAMLKRYTH 329 >gi|138895723|ref|YP_001126176.1| integrase-recombinase protein [Geobacillus thermodenitrificans NG80-2] gi|196250982|ref|ZP_03149665.1| integrase family protein [Geobacillus sp. G11MC16] gi|134267236|gb|ABO67431.1| Integrase-recombinase protein [Geobacillus thermodenitrificans NG80-2] gi|196209546|gb|EDY04322.1| integrase family protein [Geobacillus sp. G11MC16] Length = 243 Score = 113 bits (282), Expect = 5e-23, Method: Composition-based stats. Identities = 42/222 (18%), Positives = 78/222 (35%), Gaps = 22/222 (9%) Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYV-AINPCLSVERPKRKTEGIRPWTKEDMQQF 182 E RK+ P S M V F + + + + NP +++ K + + T E++ Sbjct: 5 EERKNNPVSLNTKRKLMSVFFNFLISEGLLNGDNPVKQLKKAKEEKTL-KTLTDEEVNSL 63 Query: 183 KSFWSEGSQPR----------LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232 + W + + R F LL +G+R + C + + + K Sbjct: 64 IA-WLKRQKRRNNSFYTVRDYTIFVTLLGTGMRLGELCNLKWEDIDFSSQRAKIFGKARK 122 Query: 233 I-TVELPDGFMKLLAMTP------IGK--ETFFINNDKQKMNATQFSIWFKAKATKAGVN 283 + T+ L + LA+ +GK E F N +++ FK + G+ Sbjct: 123 VETIPLNSKLLSELALWKEYSSDSLGKLPEYVFTNIKGERLGENGTKQVFKRLTNETGIK 182 Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 S H +R A ++G L ++ E Y Sbjct: 183 VSPHMLRHTFARKFIESGGDVSVLSKLLRHSSIKTTEIYLHY 224 >gi|94309002|ref|YP_582212.1| site-specific tyrosine recombinase XerC [Cupriavidus metallidurans CH34] gi|93352854|gb|ABF06943.1| tyrosine-based site-specific tyrosine recombinase XerC [Cupriavidus metallidurans CH34] Length = 369 Score = 113 bits (282), Expect = 5e-23, Method: Composition-based stats. Identities = 55/319 (17%), Positives = 104/319 (32%), Gaps = 45/319 (14%) Query: 45 PAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI-- 102 PA A P P +++L ++ ++ LA ++ S+ + Sbjct: 6 PARNRAHAVDEADEASAEKPAPDPLVVRYL--DWLATSR--KLAAHTLTSYGHDLSVLQS 61 Query: 103 --IRKSGDFDYRKITTKHIR---SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEY-VAIN 156 IR + + T+HIR + + + + + L++ R + WA R + V N Sbjct: 62 QAIRLAPGVALLALETRHIRSFAARLHGNGLSARTIARTLSAWRGFYLWAARHGHGVQSN 121 Query: 157 PCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRA 212 P V PKR + + E + + + + + FE SGLR S+ + Sbjct: 122 PVDGVRAPKRGRPLPKALSVEHAVALVAHRQDDTNESLRDQAVFELFYSSGLRLSELIQL 181 Query: 213 -------------GVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM------------ 247 G L ++ K TV + ++ L Sbjct: 182 DVRYTEDGDYRSSGWLDLDGAEVTV-LGKGSRRRTVPVGSKAIQALKAWIHVREMMLRPG 240 Query: 248 -TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATA 304 P F+ +++ + K +A AGV H +R AT + Sbjct: 241 ALPEDAHALFLGTRGRRLPISTVQQRIKRQALAAGVPSDVHPHMLRHSFATHMLQSSGDL 300 Query: 305 HELMATYGWKTVDQAETYT 323 + G ++ + YT Sbjct: 301 RAVQEMLGHASISTTQIYT 319 >gi|329118159|ref|ZP_08246871.1| site-specific tyrosine recombinase XerC [Neisseria bacilliformis ATCC BAA-1200] gi|327465819|gb|EGF12092.1| site-specific tyrosine recombinase XerC [Neisseria bacilliformis ATCC BAA-1200] Length = 308 Score = 113 bits (282), Expect = 5e-23, Method: Composition-based stats. Identities = 47/274 (17%), Positives = 91/274 (33%), Gaps = 18/274 (6%) Query: 76 SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESRKHTPSSA 133 +EY ++ + ++ + Q+ + + + + + S Sbjct: 24 AEYLETLRSEGRSPHTLAACRRDLAQLAKLLPEHAEPLSRHDFAAALKKLSQSGASERSM 83 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF--KSFWSEGSQ 191 + L+ R + VR + NP ++ PK + E + ++ + Sbjct: 84 ARKLSVWRRYADYLVRHGLLDANPAGRLKAPKLPQLLPKAVDAEPLNALFDRAACDDALD 143 Query: 192 PR--LAFEFLLYSGLRCSDSCRAGVQH--LQNNIFSIKTQKTGTIITVELPDGFMKLL-- 245 R FE L SGLR +++ V ++ ++ K G V L +L Sbjct: 144 ARDLALFELLYGSGLRVAEAQALDVADVLIEEGWVGVR-GKGGKHRQVPLTGQCATVLAA 202 Query: 246 ----AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299 G+ F N +++ Q + A K G + S H +R A+ Sbjct: 203 YLPQRAAAAGETALFTNRLGRRLGIRQMQNRLRLWAVKNGSPQHISPHMLRHSYASHLLQ 262 Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 +GA + G + + YTK D RL Sbjct: 263 SGAGIRAIQELLGHSDLAATQIYTK-LDFARLAE 295 >gi|330432804|gb|AEC17863.1| site-specific tyrosine recombinase XerC [Gallibacterium anatis UMN179] Length = 296 Score = 113 bits (282), Expect = 5e-23, Method: Composition-based stats. Identities = 46/260 (17%), Positives = 92/260 (35%), Gaps = 21/260 (8%) Query: 85 GSLAVNSRISFESYFDQ---IIRKSGDFDYRKITTKHIRSGVESRKHTP---SSAIQFLT 138 L+ + S++ ++ G D+R++ IR + K + S L+ Sbjct: 17 RQLSAKTLQSYQQQIVACVELLTNEGITDWRQVDGSVIRFILTQGKKSGLHEHSLALRLS 76 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF---KSFWSEGSQPRLA 195 S+R F++ +R + + +NP + PK + E + Q KS + + Sbjct: 77 SLRGFFQFLLRNQQIKVNPTDGISAPKAGKRLPKSIDAESISQLLDIKSKDPLSLRDKAI 136 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------ELPDGFMKLLA 246 E + SGLR S+ ++ + +K G + L L Sbjct: 137 MELMYSSGLRLSELRGLNLEDINFKARELKVLGKGNKERILPFGRYAAGALHQWLEVRLQ 196 Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATA 304 P FI++ ++ ++ + K G+N H +R AT +A + Sbjct: 197 FNP-QDNALFISHLGHRLTSSAIQQRLEQWGIKQGLNAHLNPHKLRHSFATHMLEASSDL 255 Query: 305 HELMATYGWKTVDQAETYTK 324 + G + + + YT Sbjct: 256 RAVQELLGHENLSTTQIYTH 275 >gi|262038503|ref|ZP_06011872.1| putative integrase [Leptotrichia goodfellowii F0264] gi|261747372|gb|EEY34842.1| putative integrase [Leptotrichia goodfellowii F0264] Length = 356 Score = 113 bits (282), Expect = 5e-23, Method: Composition-based stats. Identities = 66/353 (18%), Positives = 125/353 (35%), Gaps = 41/353 (11%) Query: 15 RTRHGKIIYYFR---KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71 RTR +Y+ G+R + +T A + NS + TL Sbjct: 2 RTRKIGKKWYYNFDIYIDGKRKIIEKVGGNTKKEAIEKGEIAKKDYEQTSNSFSQSIATL 61 Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131 LI +YRK+ L N++ YF+ II+ GD +K+ + + + K P+ Sbjct: 62 SDLIEDYRKNYINIFLRENTKRIRNYYFNIIIKDIGDTKLQKMNVRFFQDYIVKTKD-PN 120 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191 + +FL S LF +AVR E ++ NP +V PK + T ED++ K+ Sbjct: 121 NIKKFLNS---LFNYAVRVELISKNPIKNVIVPKAEKIDFDLITPEDIEIIKNM-EIREV 176 Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQ-------------KTGTIITVE 236 + F+ +G+R S+ +++ ++ SI+ + + Sbjct: 177 LKDFILFIYLTGVRPSEGLALEFKNINFKDKTISIERSINKYKRNLFEPLKNNSSKRKIL 236 Query: 237 LPDGFMKLLAMTPIG-------------KETFFINNDKQKMNATQFSIWFKAKATKAGVN 283 D + + F N+ + F+ K +N Sbjct: 237 FNDIIEDIFTRRKSAIEKLIDKSEGYYKSDLIFANSKGNTFIISDFNKEKYKIKEK--IN 294 Query: 284 KSAH--GVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGI 333 K+ H +R T+ + G + G + E Y ++++ + Sbjct: 295 KNFHFRALRHMHTTLLIEKGVNIKAVQERLGHADIKTTLEVYAHVTEKMKKEV 347 >gi|170781657|ref|YP_001709989.1| site-specific tyrosine recombinase XerD [Clavibacter michiganensis subsp. sepedonicus] gi|169156225|emb|CAQ01367.1| putative XerD-family recombinase [Clavibacter michiganensis subsp. sepedonicus] Length = 328 Score = 113 bits (282), Expect = 5e-23, Method: Composition-based stats. Identities = 50/305 (16%), Positives = 96/305 (31%), Gaps = 32/305 (10%) Query: 52 TGSTPKREYINSPRKKPTTLKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKS---G 107 P ++ + P L+ + + + L+ N+ ++ + G Sbjct: 4 AADGPGGAAPDTAPEVPVALRRAVDRWLRHVEVERGLSRNTIQAYRRDLARYTAHLAAEG 63 Query: 108 DFDYRKITTKHIRSGVESRKH------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV 161 D T+ H+ + + T SS + L+S+R ++ V + V ++ Sbjct: 64 VADPADATSAHVAGFAQRVRDPEQGGLTASSLARMLSSVRSFHRFLVEEGIVEVDVSAEQ 123 Query: 162 ERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL 217 + PK + + + E M + + + E L +G R S+ V + Sbjct: 124 KPPKLPSRLPKAVSVETMGRILDATDGDEPLRVRDKALLELLYATGARVSEITALTVDDV 183 Query: 218 QN-----NIFSIKTQKTGTIITVELPDGFMK-----------LLAMTPIGKETFFINNDK 261 K G V + + +LA F+ Sbjct: 184 LGPDGAAAEIVRVVGKGGKQRIVPVGSFARRAVDAYLVRVRPILAARGSATPALFLGLRG 243 Query: 262 QKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319 ++ + KA A +AGV S H R AT GA + G +V Sbjct: 244 HALSRQNAWLVIKAAAERAGVTEEISPHIFRHSFATHLIAGGADVRVVQELLGHSSVATT 303 Query: 320 ETYTK 324 + YT+ Sbjct: 304 QIYTR 308 >gi|251797061|ref|YP_003011792.1| integrase family protein [Paenibacillus sp. JDR-2] gi|247544687|gb|ACT01706.1| integrase family protein [Paenibacillus sp. JDR-2] Length = 305 Score = 113 bits (282), Expect = 6e-23, Method: Composition-based stats. Identities = 43/290 (14%), Positives = 94/290 (32%), Gaps = 22/290 (7%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP- 130 L +R ++ + + + H+ S + S++ Sbjct: 12 GKLTQAFRIWMKQAGYTDTTQKEYMREAYAYLESLEGAAAEQAGKMHVISFLISKQRGAG 71 Query: 131 -SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP-WTKEDMQQFKSFWSE 188 + + L+++R + + E NP + V++ K + ++++ S Sbjct: 72 DRARNRTLSAIRSFYTALIDFEMATRNPAMEVKKSKTEKNKKPVYLEEDELASSLSCIEG 131 Query: 189 GSQPR--LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLL 245 + R F + Y GLR + R +I+ K + +P+ +L Sbjct: 132 RYRARNVAIFLLMSYCGLRVGEVHRLNRSDFNPVRGTIEVFGKGRKWNEIPVPEELAAVL 191 Query: 246 AMTPIGKET--------FFINNDKQKMNATQFSI-------WFKAK-ATKAGVNKSAHGV 289 + + T FF++ ++++ Q FK+ A S H + Sbjct: 192 SEVAQDRITPYKEQEDAFFVSQKGRRLSIRQIQKIAGQTFEAFKSINPHAANKKLSCHKL 251 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339 R ATI G + G +++ YT D + + R+ Sbjct: 252 RHTFATILLKNGVDIRVVKELLGHASIETTMIYTHVNDDQKKEAMATIRL 301 >gi|167644692|ref|YP_001682355.1| integrase family protein [Caulobacter sp. K31] gi|167347122|gb|ABZ69857.1| integrase family protein [Caulobacter sp. K31] Length = 308 Score = 113 bits (282), Expect = 6e-23, Method: Composition-based stats. Identities = 47/289 (16%), Positives = 101/289 (34%), Gaps = 31/289 (10%) Query: 69 TTLKWLISEYRKSAH-WGSLAVNSRISFESYF---DQIIRKSGDFDYRKITTKHIR-SGV 123 + I + + + A N+ ++E + GD D + + Sbjct: 3 ASASGWIDAFLEMMAVERAAARNTLTAYEKDLADARLFLASRGDLDGASAEAIEAYFADL 62 Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 +R +P++A + +++R +++ + + + +P VE PK + +++ + + Sbjct: 63 GARGLSPATAARRRSALRQFYRFVLGEGWRDDDPSRRVEAPKAGRPLPKVLSRDAVLRLI 122 Query: 184 SFW-----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL-QNNIFSIKTQKTGTIITVEL 237 + ++G + E L SGLR S+ + L ++ F + K G L Sbjct: 123 AAAAAKDGAQGLRLACMIELLYASGLRISELLNLPLAALARDPAFLMVKGKGGKERLAPL 182 Query: 238 PDGFMKLLAMTPIGKETFFI-----------------NNDKQKMNATQFSIWFKAKATKA 280 D + + F ++ A + S + A A Sbjct: 183 NDAARTAVKAYLEARPQFLPKGAPNGGVKDSPWLFPSRAKSGRLTARRVSQLLEDAAIAA 242 Query: 281 GVNK---SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 G+++ S H +R AT + GA + G + + YT A Sbjct: 243 GIDRQTVSPHVLRHAFATHLLEGGADLRVIQTLLGHADIATTQIYTHVA 291 >gi|330970503|gb|EGH70569.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv. aceris str. M302273PT] Length = 299 Score = 112 bits (281), Expect = 6e-23, Method: Composition-based stats. Identities = 37/259 (14%), Positives = 93/259 (35%), Gaps = 19/259 (7%) Query: 85 GSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIR---SGVESRKHTPSSAIQFLT 138 ++ ++ ++ ++ +K+ + + +H+R + + + S + L+ Sbjct: 16 RQVSPHTLEAYRRDLGKVLAYCQKAQVSSWSDLDIQHLRSFTARQHQQGQSSRSLARMLS 75 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRL 194 ++R +K+ R+ +P + PK + + + Q E + + Sbjct: 76 AVRGFYKYLNREGICQHDPANGLSPPKGERRLPKTLDTDRAAQLLDGGVEDDFLAHRDQA 135 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV--------ELPDGFMKLLA 246 E L SGLR S+ + L ++ G+ V + + ++ L A Sbjct: 136 ILELLYSSGLRLSELTGLNLDQLDLRDGLVQVLGKGSKTRVLPVGSKARQALEVWLPLRA 195 Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAK-ATKAGVNKSAHGVRKFSATISADAGATAH 305 +T + F++ +++ + KA + G N H +R A+ ++ Sbjct: 196 LTNPQDDAVFVSQQGKRLGPRAIQVRLKAAGERELGQNLHPHMLRHSFASHLLESSQDLR 255 Query: 306 ELMATYGWKTVDQAETYTK 324 + G + + YT Sbjct: 256 AVQELLGHADIKTTQIYTH 274 >gi|293374710|ref|ZP_06621018.1| tyrosine recombinase XerC [Turicibacter sanguinis PC909] gi|325840598|ref|ZP_08167079.1| tyrosine recombinase XerC [Turicibacter sp. HGF1] gi|292646624|gb|EFF64626.1| tyrosine recombinase XerC [Turicibacter sanguinis PC909] gi|325490247|gb|EGC92580.1| tyrosine recombinase XerC [Turicibacter sp. HGF1] Length = 301 Score = 112 bits (281), Expect = 6e-23, Method: Composition-based stats. Identities = 38/276 (13%), Positives = 101/276 (36%), Gaps = 25/276 (9%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQI-----IRKSGDFDYRKITTKHIRSGVESRK 127 I +Y + + ++ +++E + +F++ + + + + Sbjct: 4 WILKYMDYLKYEKRYSEHTLLNYERDVKEWFSFCQREGINEFEFDYSDVRSYLNDCYTHQ 63 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + S+ + L+S+R +++ ++++ V NP L ++ PK+ + +E++Q Sbjct: 64 LSRSTMSRKLSSLRSYYQFLLKEKQVKQNPFLIMKGPKKAETLPQFLYEEELQALFDSID 123 Query: 188 ----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDGFM 242 G + E L +G+R S+ C+ L + ++ K G V + + + Sbjct: 124 QTSILGCRNYALLELLYGTGIRVSECCQMKQSQLNVELGTVLIHGKGGKDRYVPIGEFAV 183 Query: 243 KLLAM------------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAG--VNKSAHG 288 + + + + + F+N+ + + + + H Sbjct: 184 EAIEAYLQRSRPQLLKKSNLETDVLFLNHLGTPLTERGVRDILSRMTNQTAKHIKVAPHM 243 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 +R AT + GA + G + + + YT Sbjct: 244 IRHTFATHLLNNGADLRSVQELLGHENLSSTQIYTH 279 >gi|254451038|ref|ZP_05064475.1| phage integrase [Octadecabacter antarcticus 238] gi|198265444|gb|EDY89714.1| phage integrase [Octadecabacter antarcticus 238] Length = 317 Score = 112 bits (281), Expect = 6e-23, Method: Composition-based stats. Identities = 44/260 (16%), Positives = 87/260 (33%), Gaps = 23/260 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFD--YRKITTKHIRSGVESRKHTPSSAIQFLTSMRV 142 +L S+ S + + G K+ + + + + Q +T ++ Sbjct: 39 RNLGPASQSSHQRACKRFAAWLGRSPETATPDDVKYFQQHLVESGVSICTRNQTMTGVKF 98 Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS 202 LF+ +R+ + + K + +K+++++ + + R+ Sbjct: 99 LFRVTLRR----HDLVAEIFHLKEPVKVPLVLSKKEIKRILAMAPS-LKARVMLSLAYGC 153 Query: 203 GLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAM------------T 248 G+R + R V + I I K V LP + +L Sbjct: 154 GMRAGEVVRLKVGDIDSAQKIIRIVQAKGRKDRNVMLPSDILGMLREWWKERPTGQDKDL 213 Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHE 306 P + F + ++A Q S FK A +AG+ K + H +R AT + G Sbjct: 214 PTPERVLFPGYRGKHLSARQISRLFKETAREAGITKPVTLHTLRHSFATHLLERGVDIRV 273 Query: 307 LMATYGWKTVDQAETYTKGA 326 + A G + Y A Sbjct: 274 IQALLGHSKLTTTARYASVA 293 >gi|150003403|ref|YP_001298147.1| tyrosine type site-specific recombinase [Bacteroides vulgatus ATCC 8482] gi|254881306|ref|ZP_05254016.1| tyrosine type site-specific recombinase [Bacteroides sp. 4_3_47FAA] gi|294777807|ref|ZP_06743251.1| putative tyrosine recombinase XerC [Bacteroides vulgatus PC510] gi|319640308|ref|ZP_07995033.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_40A] gi|149931827|gb|ABR38525.1| tyrosine type site-specific recombinase [Bacteroides vulgatus ATCC 8482] gi|254834099|gb|EET14408.1| tyrosine type site-specific recombinase [Bacteroides sp. 4_3_47FAA] gi|294448261|gb|EFG16817.1| putative tyrosine recombinase XerC [Bacteroides vulgatus PC510] gi|317388083|gb|EFV68937.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_40A] Length = 293 Score = 112 bits (281), Expect = 6e-23, Method: Composition-based stats. Identities = 38/265 (14%), Positives = 92/265 (34%), Gaps = 24/265 (9%) Query: 76 SEYRKSAHW-GSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIRSG---VESRK 127 + + + + + +S+ + D+ + +R + Sbjct: 4 DSFLDYLRFEKNYSEKTIVSYGIDLTKFEEYFKGKDEKVDFTTVDADLVRGWVMNLMENG 63 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 +T +S + L+S+R +++ +++ + +P L + PK K + +M + Sbjct: 64 YTSASVNRKLSSLRSFYRFLLKKGVIEEDPMLKIIGPKNKKPLPVFLKEREMDRLLDDVP 123 Query: 188 -----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGF 241 G + R+ E +G+R S+ + + F IK T K + + Sbjct: 124 FKEDFTGCRDRMVLEMFYATGMRLSELIGLNDVDVDFSAFLIKVTGKRNKQRLIPFGEEL 183 Query: 242 MKLL--------AMTPIGKETFFINNDKQKMNATQFSIWFKA--KATKAGVNKSAHGVRK 291 + + + P E FF+ + ++M + + K + +S H +R Sbjct: 184 RRAMSVYLKIRNEVLPGKAEAFFVLKNGKRMYPGKVYLLVKRNLSKVVSLKKRSPHVLRH 243 Query: 292 FSATISADAGATAHELMATYGWKTV 316 AT + A + G ++ Sbjct: 244 TFATAMLNNEAELGAVKELLGHSSL 268 >gi|294778055|ref|ZP_06743489.1| site-specific recombinase, phage integrase family [Bacteroides vulgatus PC510] gi|294448113|gb|EFG16679.1| site-specific recombinase, phage integrase family [Bacteroides vulgatus PC510] Length = 200 Score = 112 bits (281), Expect = 6e-23, Method: Composition-based stats. Identities = 38/203 (18%), Positives = 75/203 (36%), Gaps = 20/203 (9%) Query: 154 AINPCLSVERPKRKTEGIR--PWTKEDMQQFKSFWSEGSQP--RLAFEFLLYSGLRCSDS 209 + +PC + K ++ +R + E++Q+ + + P R AF F LY GL + Sbjct: 4 SKDPCKDITY-KVDSQMLRKNVLSPEEVQKLMACHYDNENPTVRQAFIFCLYCGLHLCNV 62 Query: 210 CRAGVQHLQ--NNIFSIKTQKTG-----TIITVELPDGFMKLLAMTPIGKETFFINNDKQ 262 +++ N + + K + + + L DG + ++ P K + Sbjct: 63 KDLTFKNVDYANRLLKFEQSKAKGHSASSGVVIPLNDGLLSIIGEAPTDKNCLIFDLS-- 120 Query: 263 KMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320 K +AG++K S H R A + G + + G + E Sbjct: 121 --TYESCYKSVKRWVKRAGIDKHMSWHCARHSFAVNILNNGTNIKTIASLLGHSGLKHTE 178 Query: 321 TYTKGADRIRLGIKNSRRISSVV 343 YT+ D +L + +S + Sbjct: 179 KYTRAVD--KLKEEAINSLSELK 199 >gi|253997561|ref|YP_003049625.1| tyrosine recombinase XerC [Methylotenera mobilis JLW8] gi|253984240|gb|ACT49098.1| tyrosine recombinase XerC [Methylotenera mobilis JLW8] Length = 293 Score = 112 bits (281), Expect = 6e-23, Method: Composition-based stats. Identities = 41/271 (15%), Positives = 85/271 (31%), Gaps = 22/271 (8%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKI---TTKHIRSGVESRKHTP 130 + Y + + L+ + I++ + + D + I + + +R+ + Sbjct: 4 LDAYIQHLTFERGLSQLTCINYRRDISLLESLAEAADLQTISHAQIRRFIGKLHARELSS 63 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 S + L++ R + + + NP + PK + + + F G+ Sbjct: 64 KSIARALSAWRGFYDYLIHHHGYTQNPVHGLRAPKAAKTLPQALSVDQAVNFVDIQGGGT 123 Query: 191 ---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPD------ 239 + E SGLR ++ + L + + + T I V L Sbjct: 124 LDLRDHAILELFYSSGLRLAELVNLDIDRLDFTDGTVEVIGKGNKTRI-VPLGSHAAEAM 182 Query: 240 ----GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK--AGVNKSAHGVRKFS 293 L+ K+ FI +++ KA A K A N H +R Sbjct: 183 QKWLQARALIPTAETNKQAVFITQQGKRITPRAVQYRVKAWAIKQGADSNLHPHMLRHSF 242 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTK 324 A+ + + G + + YT Sbjct: 243 ASHVLQSSQDLRAVQEMLGHANISTTQVYTH 273 >gi|153807716|ref|ZP_01960384.1| hypothetical protein BACCAC_01998 [Bacteroides caccae ATCC 43185] gi|160886162|ref|ZP_02067165.1| hypothetical protein BACOVA_04169 [Bacteroides ovatus ATCC 8483] gi|160889100|ref|ZP_02070103.1| hypothetical protein BACUNI_01521 [Bacteroides uniformis ATCC 8492] gi|149129325|gb|EDM20539.1| hypothetical protein BACCAC_01998 [Bacteroides caccae ATCC 43185] gi|156108047|gb|EDO09792.1| hypothetical protein BACOVA_04169 [Bacteroides ovatus ATCC 8483] gi|156861567|gb|EDO54998.1| hypothetical protein BACUNI_01521 [Bacteroides uniformis ATCC 8492] Length = 327 Score = 112 bits (281), Expect = 6e-23, Method: Composition-based stats. Identities = 45/279 (16%), Positives = 99/279 (35%), Gaps = 15/279 (5%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133 LI + + + S + S + IRK + + R ITT +R+ + + T + Sbjct: 52 LIDSFLSAKRVEGCSDKSMHYYRSTLNNAIRKI-EKNIRHITTDDLRNYLNDYQQTSGAT 110 Query: 134 ----IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 + F W ++Y+ +P + + K ++ E ++Q + EG Sbjct: 111 KVTVDNIRRILSSFFSWLEDEDYIVKSPVRRIHKVKVGKTVKETYSDEALEQMRDHC-EG 169 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDG----FMKL 244 + + L +G+R + + + N I T K V + Sbjct: 170 IRDLALIDLLASTGMRVGELVKLNRNDIDFENRECIVTGKGDKQRRVYFDARTKIHLQRY 229 Query: 245 LAMTPIGKETFFIN--NDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAG 301 LA F++ ++ + I + + + K H R+ AT++ D G Sbjct: 230 LAERIDDNPALFVSLLAPYDRLQISGVEIRLRRLGRELNIPKVHPHKFRRTLATMAIDKG 289 Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340 ++ G +++D Y ++ + + + + I Sbjct: 290 MPIEQVQHLLGHQSLDTTLQYA-MVNQTNVKMSHRKFIG 327 >gi|206889998|ref|YP_002248163.1| site specific recombinase [Thermodesulfovibrio yellowstonii DSM 11347] gi|206741936|gb|ACI20993.1| site specific recombinase [Thermodesulfovibrio yellowstonii DSM 11347] Length = 345 Score = 112 bits (281), Expect = 6e-23, Method: Composition-based stats. Identities = 48/323 (14%), Positives = 100/323 (30%), Gaps = 26/323 (8%) Query: 17 RHGKIIYYFRKGHGRRIRL--PYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74 + G I ++ G++ R Y AL + + + + Sbjct: 5 KRGNIWWFSVTIKGKQFRFSTKTTDRKKATEIYAKALL----ELDNPTKDVENQISFGEF 60 Query: 75 IS-EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKHTPS 131 +Y + S S + YF I +ITT+ I + TP+ Sbjct: 61 FENQYLPFSE----RQASHQSKKYYFKVIPEWFKKIPINQITTRDIELLQGDLLKGRTPA 116 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINP---CLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 S + + +++ + A E V+ K + + +R + E+ + Sbjct: 117 SVNRIIATIKHSLRKAYEWELTEEETLKRVQRVKPLKGEVQRLRFLSLEECHKLIEVAEP 176 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQKTGTIITVELPDGF----M 242 +P L +G+R + + ++ K G + + D Sbjct: 177 HLKP--IIITALNTGMRKGEILSLTWSQIDLKHGFIHLEKTKNGERRDIPMNDTLKILFR 234 Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAG 301 L+ + + F+N + K F+ +AG+ + H +R A+ G Sbjct: 235 DLIKNRRLDSDYVFLNPETGKRLTD-IKRSFRTACKRAGITDFRFHDLRHTFASHLIMNG 293 Query: 302 ATAHELMATYGWKTVDQAETYTK 324 + G KT+ Y+ Sbjct: 294 VDLKTVQELLGHKTIKMTLKYSH 316 >gi|118476848|ref|YP_893999.1| integrase [Bacillus thuringiensis str. Al Hakam] gi|118416073|gb|ABK84492.1| integrase [Bacillus thuringiensis str. Al Hakam] Length = 382 Score = 112 bits (281), Expect = 6e-23, Method: Composition-based stats. Identities = 48/322 (14%), Positives = 97/322 (30%), Gaps = 44/322 (13%) Query: 45 PAYMSALTGSTPKREYINSPRKKPT----TLKWLISEYRKSAHWGSLAVNSRISFESYF- 99 ++ + TG K + + + T + L + Y + L + + + YF Sbjct: 40 RRFILSRTGKRGKAKLSRTSIEVTQIETYTFQELFNIYMFAKEAEGLVRKTLENKKGYFL 99 Query: 100 ---DQIIRKSGDFDYRKITTKHIRSGVESRKH--------------------TPSSAIQF 136 + D + T IR + K+ + S Sbjct: 100 VFHRYLEEHHEDVTPNTLDTNTIREFLYYLKNDHVKHKNNHCVKEKYKSVGVSVSYINTI 159 Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS----FWSEGSQP 192 + MR + + V +EYV +NP ++ K + I + + ++ G + Sbjct: 160 MKHMRAFYNFLVEEEYVQLNPFTKIKSLKEVQDNIEALSVDQLKTLLKQPNQRTYAGFRD 219 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTI--ITVELPDGFMKLLAMT 248 + L +G+R S++ + + N+ +K T V + KLL Sbjct: 220 YVLMMLLADTGMRISEALNLQQEDIDFKTNVIELKGTNTKNRKTRYVPISQKTSKLLREL 279 Query: 249 PI-----GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKFSATISADA 300 + F ++ +F K +G+ S H R A Sbjct: 280 LVEIEEFDTLHIFATVYGNTIDPARFRQRLKMYGNNSGIKGVRVSPHTFRHTFAKYYLLN 339 Query: 301 GATAHELMATYGWKTVDQAETY 322 L G +++ Y Sbjct: 340 NGDVMTLQKILGHSSIEMVRKY 361 >gi|116749926|ref|YP_846613.1| phage integrase family protein [Syntrophobacter fumaroxidans MPOB] gi|116698990|gb|ABK18178.1| phage integrase family protein [Syntrophobacter fumaroxidans MPOB] Length = 381 Score = 112 bits (281), Expect = 6e-23, Method: Composition-based stats. Identities = 59/331 (17%), Positives = 111/331 (33%), Gaps = 34/331 (10%) Query: 22 IYYFRKGHGRRIRLPYPHESTFIPAYMSALT-GSTPKREYINSPRKKPT----------- 69 IYY R G ++ + F +A G KR + P + Sbjct: 29 IYYIRYRRGGKL-IEEKAGRQFRDDMSAARAAGIRAKRMEGDQPTNEERREAEREVKERW 87 Query: 70 TLKWLISEY-RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR-- 126 T+ L EY R + + + I GD + ++ + Sbjct: 88 TITRLWEEYKRGTPGLKGIV----TDENRFSKHIKPIFGDKEPGELVPLDVDRLRVKMLK 143 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCL--SVERPKRKTEGIRPWTKEDMQQFKS 184 H P++ L +R + + VR++ PCL + P+ + E T +++ + Sbjct: 144 THKPATVRNALELLRRIVNFGVRKQLC---PCLSFQIPMPRVRNEKTEDLTPDELARLLK 200 Query: 185 FWSE--GSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDG 240 SE +Q + L++G+R + + + SI+ K G + L + Sbjct: 201 ALSEEPNTQVAHIVKLALFTGMRRGEILKLRWTDIDLDRGFISIRDPKGGVDQRIPLSES 260 Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA---HGVRKFSATIS 297 ++LA P ++ F+ + T + A + K HG+R A+ Sbjct: 261 ARRILANHP-KTDSLFVFPGRNGAQRTDINKSLNRIKEAAELPKDFRMLHGLRHAFASSL 319 Query: 298 ADAG-ATAHELMATYGWKTVDQAETYTKGAD 327 A +G + L K+ Y D Sbjct: 320 ASSGEVDMYTLQKLLTHKSPTMTARYAHLRD 350 >gi|289550957|ref|YP_003471861.1| Site-specific tyrosine recombinase [Staphylococcus lugdunensis HKU09-01] gi|315658459|ref|ZP_07911331.1| tyrosine recombinase XerC [Staphylococcus lugdunensis M23590] gi|289180489|gb|ADC87734.1| Site-specific tyrosine recombinase [Staphylococcus lugdunensis HKU09-01] gi|315496788|gb|EFU85111.1| tyrosine recombinase XerC [Staphylococcus lugdunensis M23590] Length = 297 Score = 112 bits (281), Expect = 6e-23, Method: Composition-based stats. Identities = 36/267 (13%), Positives = 94/267 (35%), Gaps = 21/267 (7%) Query: 85 GSLAVNSRISFESYFDQIIRKSGD-----FDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139 + + ++ S+ Q + ++ S + ++ ++ + +++ Sbjct: 16 RNFSDHTIKSYHDDLMQFNEFLAQEMLTLSTFEYKDARNYLSYLYNKNLKRTTVSRKIST 75 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195 +R +++ + Q+ INP + + PK++ + + + +M +G + R+ Sbjct: 76 LRSFYEYWMTQDETVINPFVQLVHPKKEQYLPQFFYEAEMDALFETVLHDAKKGLRDRVI 135 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE--------LPDGFMKLLA 246 E L +G+R S+ + + +K K + + ++ Sbjct: 136 LELLYSTGMRVSELVHIKKMDIDLTLPGVKVLGKGSKERFLPFGEFCKQSIEQYLLEFGP 195 Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATK-AGV-NKSAHGVRKFSATISADAGATA 304 + +N + Q + + AGV + H +R AT + GA Sbjct: 196 VKQNDHPFLLVNMNGQPITERGVRYVLNDIVKRTAGVTDIHPHKLRHTFATHLLNQGADL 255 Query: 305 HELMATYGWKTVDQAETYTKGA-DRIR 330 + + G + YT + D++R Sbjct: 256 RTVQSLLGHVNLSTTGRYTHVSKDQLR 282 >gi|225175140|ref|ZP_03729136.1| integrase family protein [Dethiobacter alkaliphilus AHT 1] gi|225169316|gb|EEG78114.1| integrase family protein [Dethiobacter alkaliphilus AHT 1] Length = 386 Score = 112 bits (281), Expect = 6e-23, Method: Composition-based stats. Identities = 63/375 (16%), Positives = 125/375 (33%), Gaps = 62/375 (16%) Query: 11 VTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70 V + GK Y F G + A+ + K E TT Sbjct: 23 VVIGKDEQGKTKYQFFYGKTK-------------AEVTKAVKEAVGKVEKGIDINAGKTT 69 Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH- 128 + S ++ ++ ++E+++ I G KI H++ ++ ++ Sbjct: 70 FTEWFEIWLASKK-NNIKPSTYDTYETFWRVHIKSALGHMKLDKIQPHHVQKLLDEKQGG 128 Query: 129 --TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS--VERPK-RKTEGIRPWTKEDMQQFK 183 +P S T++ K A++Q ++ NP + +E PK K + ++P T++D++ F Sbjct: 129 ELSPRSVRYIHTTINTALKSALKQRIISFNPADAELLELPKNTKIKEVKPLTQDDVKAFI 188 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ----------------NNIFSIKTQ 227 + E + +A+ L G+R + +++ + T Sbjct: 189 ATAKE-DKFSVAYILSLALGMRKGEVLGLQWENIDFEQKTLTIKNNLTRVKGKGLVLTTP 247 Query: 228 KTGTIITVELPDG-----FMKLLAMTPIGKE----------------TFFINNDKQKMNA 266 KT + V L + + +E F + + + Sbjct: 248 KTASSNRVVLLPEKILTLLSEHGRKQAVEREIAKASGKYSEAEGFDNMVFTYEEGKPVCP 307 Query: 267 TQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTK 324 F FK KAG+ H +R T+ +AG + AT G YT+ Sbjct: 308 RYFERKFKKVLEKAGLSQAGLHSLRHSYGTLQNEAGVNMKAIQATLGHSKASFTMSVYTQ 367 Query: 325 -GADRIRLGIKNSRR 338 + R + + Sbjct: 368 NTTELQREATQAVDK 382 >gi|85859268|ref|YP_461470.1| integrase/recombinase [Syntrophus aciditrophicus SB] gi|123725256|sp|Q2LT92|XERC_SYNAS RecName: Full=Tyrosine recombinase xerC gi|85722359|gb|ABC77302.1| integrase/recombinase [Syntrophus aciditrophicus SB] Length = 310 Score = 112 bits (281), Expect = 6e-23, Method: Composition-based stats. Identities = 47/296 (15%), Positives = 105/296 (35%), Gaps = 37/296 (12%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD-------------FDYRKITTKHI 119 LI E+ + +L+ ++R ++ S +Q + + + + Sbjct: 4 LIKEFDRYMDLERNLSTHTRKNYLSDLNQFKIYLEENHRVPTELKTEAWQNVDYMMVRAF 63 Query: 120 RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179 + R+ + + L S+R FK+ ++ + NP +V P+ + + +++ Sbjct: 64 LGALYRRRVKKVTIARKLASLRAFFKYLHQKRKIQCNPLEAVSTPRTEKYIPAVLSVDEI 123 Query: 180 QQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTII 233 + G + R E SG+R S+ + + + I+ K Sbjct: 124 FVLLNLPFPEDVFGLRDRAILELFYSSGIRVSELTGINEEDMDFSQGLIRIR-GKGKKER 182 Query: 234 TVELPDGFMKLLAM---TPIGKET-----------FFINNDKQKMNATQFSIWFKAKATK 279 V + + + G ET F+N + +++A + + Sbjct: 183 IVPIGQPASEAVQRYMMKKPGSETSGKAVATCPVPLFVNRRQGRLSARSVARILSKYVSM 242 Query: 280 AGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 +G+ K S H +R AT DAGA + G +++ + YT + + + Sbjct: 243 SGLQKQISPHTLRHSFATHLMDAGADLRSIQELLGHESLSTTQKYTAVSVNRLMAV 298 >gi|222112699|ref|YP_002554963.1| integrase family protein [Acidovorax ebreus TPSY] gi|221732143|gb|ACM34963.1| integrase family protein [Acidovorax ebreus TPSY] Length = 399 Score = 112 bits (281), Expect = 6e-23, Method: Composition-based stats. Identities = 56/320 (17%), Positives = 114/320 (35%), Gaps = 26/320 (8%) Query: 45 PAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-II 103 +++ + + R P T+K L +++ + +++ +++ D+ I+ Sbjct: 75 QEWLAEVRRGGDPSAAKAAARSAP-TVKELCTKFMEDYSKQRNKPSTQRGYQAVIDRCIV 133 Query: 104 RKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVA--INPCLSV 161 G + + + + ++ H P+ A + + MR +F A + NPC V Sbjct: 134 PMLGRLKVQDVKRPDVATAMKKMAHKPAEANRAFSVMRKMFNLAEVWGHRPDGTNPCRHV 193 Query: 162 ERPKRKTEGIRPWTKEDM----QQFKSFWSEGSQPR---LAFEFLLYSGLRCSDSCRAGV 214 + EDM ++ + +EG + LA R S+ Sbjct: 194 PM-YPNGRATHLISDEDMGKLFRRLEHIEAEGLENYVIPLAIRLQFEFAGRRSEIVTLRW 252 Query: 215 Q--HLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFI----NNDKQKM-NAT 267 L N KTG + + + +LL+ P + T ++ ++ + + Sbjct: 253 DWVDLDNRRVVWPDSKTGGMSK-PMSEEAYRLLSTAPRQEGTPYVLPSPSHPGKHLTTGE 311 Query: 268 QFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 + W +A + HG+R SAT A++G MA KTV Y D Sbjct: 312 YYGGWSRALKAAGATHVGTHGIRHRSATDIANSGIPVKVGMALTAHKTVAMFMRYVHTED 371 Query: 328 RIRLGIKNSRRISSVVDSDD 347 R+ + +V + Sbjct: 372 ------DPVRKAAELVANRR 385 >gi|37527448|ref|NP_930792.1| site-specific tyrosine recombinase XerC [Photorhabdus luminescens subsp. laumondii TTO1] gi|37527457|ref|NP_930801.1| site-specific tyrosine recombinase XerC [Photorhabdus luminescens subsp. laumondii TTO1] gi|36786883|emb|CAE15952.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] gi|36786892|emb|CAE15961.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 376 Score = 112 bits (281), Expect = 6e-23, Method: Composition-based stats. Identities = 57/310 (18%), Positives = 104/310 (33%), Gaps = 32/310 (10%) Query: 59 EYINSPRKKPTTLKWLISEY---RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT 115 P P +L L+ + R+ +W + + +F + G + IT Sbjct: 19 RKPVGPAHDPKSLYALLLRFVVWRQERNWSESTLKVQTHHTYHFILWATERGLYYAADIT 78 Query: 116 T---KHIRSGVESRKHT------PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166 + + + + T + L ++V FKW +Q + NP +E P+ Sbjct: 79 RPILERYQRYLYQYRKTNGEPLSTRTQRTQLEPLKVWFKWLTKQNLILANPAADIELPRL 138 Query: 167 KTEGIR-PWTKEDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI 221 + R T ++ +Q + G + R E L +G+R + R V + Sbjct: 139 EKHLPRYILTIDETEQILAQPDLTTLQGVRDRALMELLWSTGMRRGELTRLDVYSVDGKR 198 Query: 222 --FSIKTQKTGTIITVELPDGFMKLLAM-----------TPIGKETFFINNDKQKMNATQ 268 +I+ K + L + + L P K F + + A Sbjct: 199 KTVTIRQGKGNKDRVLPLGERALSWLQRYQQQVRPQLIVNPDVKALFVAMDGLDGLQANG 258 Query: 269 FSIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 S A G+ K H R AT + GA + A G +V+ + YT+ + Sbjct: 259 ISNLVTAYINAVGIEKKGACHLFRHAMATQMLENGADLRWIQAMLGHASVESTQVYTQVS 318 Query: 327 DRIRLGIKNS 336 R + S Sbjct: 319 IRALQAVHAS 328 >gi|281422267|ref|ZP_06253266.1| integrase/recombinase XerD [Prevotella copri DSM 18205] gi|281403772|gb|EFB34452.1| integrase/recombinase XerD [Prevotella copri DSM 18205] Length = 294 Score = 112 bits (281), Expect = 6e-23, Method: Composition-based stats. Identities = 46/272 (16%), Positives = 95/272 (34%), Gaps = 27/272 (9%) Query: 77 EYRKSAHWGSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIRSGVESR---KHT 129 EY +S + + + ++ + + F + + + IR+ +E + Sbjct: 9 EYLRSE--LNRSQRTVENYREDLKLFEQYARNLSESFTWESVDSDMIRNWMEHMIDAGNK 66 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF--KSFWS 187 +S + L+++++ +++A+ + YV +P S++ PK + + +M + + W Sbjct: 67 ATSVNRRLSALKMFYRFALVRHYVESDPAHSLKGPKESKPLPQFLKENEMDELLDRKMWG 126 Query: 188 E---GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFM 242 + + R +G+R S+ V + I T K V D Sbjct: 127 DDYDNVRARTIIILFYETGMRLSELIGLDVDDVNFIKKEIKI-TGKGNKQRIVPFGDELK 185 Query: 243 KLL--------AMTPIGKETFFINNDKQKMNATQFSIWFKA-KATKAGVNK-SAHGVRKF 292 L + + + +M+ Q K A + K S H +R Sbjct: 186 NALSEYLTLRAQRVMVKSGALLLADKGGRMSPVQVREIVKENLARVCSLKKKSPHVLRHT 245 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTK 324 AT + GA L G + E YT Sbjct: 246 FATAMLNHGAGIESLKRLLGHAKLSTTEIYTH 277 >gi|206558906|ref|YP_002229666.1| site-specific tyrosine recombinase XerC [Burkholderia cenocepacia J2315] gi|198034943|emb|CAR50815.1| tyrosine recombinase XerC [Burkholderia cenocepacia J2315] Length = 306 Score = 112 bits (281), Expect = 6e-23, Method: Composition-based stats. Identities = 46/280 (16%), Positives = 91/280 (32%), Gaps = 32/280 (11%) Query: 75 ISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTP 130 I+ Y + H L+ ++ ++ D++ + + +T +R V + Sbjct: 6 IAAYLSNLKHVRQLSEHTLRAYTHELDELKKLAAGRPLDALTAADMRGAVARAHAGGLSA 65 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQFKSFW 186 S L++ R ++W ++ + NP +V PKR + + +D M + Sbjct: 66 RSISHRLSAWRAFYRWLAQRIEMPANPVAAVRAPKRPKTLPKALSVDDASALMDAPLAGT 125 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRA-------------GVQHLQNNIFSIKTQKTGTII 233 +EG + E SGLR ++ G L +++ K Sbjct: 126 TEGIRDHAILELFYSSGLRLAELIGLDVTYTQADGYRSAGWLDLAEAEVTVR-GKGNKER 184 Query: 234 TVELPDGFMKLLAMT--------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284 V + + L F++ +M+ K A AG+ Sbjct: 185 KVPVGRKAIDALNAWLAVRGEFVKHDPHPLFVSVRGNRMSPGVVRERVKRAALAAGIPAN 244 Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 H +R AT + + G +V + YT Sbjct: 245 VHPHVLRHSFATHVLQSSGDLRAVQELLGHASVAATQVYT 284 >gi|300741219|ref|ZP_07071240.1| tyrosine recombinase XerD [Rothia dentocariosa M567] gi|300380404|gb|EFJ76966.1| tyrosine recombinase XerD [Rothia dentocariosa M567] Length = 320 Score = 112 bits (281), Expect = 6e-23, Method: Composition-based stats. Identities = 43/237 (18%), Positives = 77/237 (32%), Gaps = 31/237 (13%) Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 R P+S + + ++R + + +P +V+ PK + + E Sbjct: 63 TRDVTLPLPLGPNSIARTMAAVRGAHSFWHASRILETDPAAAVKPPKNVKRLPKAVSVEQ 122 Query: 179 MQQFKS----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ---------NNIFSIK 225 MQ+ + G + R EFL +G R S+ + + ++ Sbjct: 123 MQKLLAIPSLKTPTGLRNRAILEFLYATGARVSEMLATDLDDIHLGEKPRDENGEFIAVP 182 Query: 226 T-----QKTGTIITVELPDGFMKLL-----AMTPI------GKETFFINNDKQKMNATQF 269 K G V L + L P G F+N ++ Sbjct: 183 GYVRLFGKGGKERLVPLGSYAQRALEDYIVRARPKFASHGKGTAALFLNGRGSRLGRQGA 242 Query: 270 SIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 + K A +AG+ + S H +R AT GA + G ++ + YTK Sbjct: 243 WLILKETAEEAGLSSDFSPHSIRHSFATHLVQGGADIRVVQELLGHASIATTQVYTK 299 >gi|296283728|ref|ZP_06861726.1| integrase [Citromicrobium bathyomarinum JL354] Length = 304 Score = 112 bits (281), Expect = 6e-23, Method: Composition-based stats. Identities = 43/268 (16%), Positives = 89/268 (33%), Gaps = 16/268 (5%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLF 144 A N+ ++ + + G + T R G P++ + +++R F Sbjct: 17 RGAAANTLAAYRRDLEGAVGIVGPLE-DATRTDLARLGAAWADLAPATVARKASALRQFF 75 Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW--------SEGSQPRLAF 196 + + + NP ++ P ++ + ++ + + Sbjct: 76 GFLEDEGLRSDNPSAALPSPTKRRSLPKILDHAQVEALFAQAEREAEEGDPAALRLLAMI 135 Query: 197 EFLLYSGLRCSDSCRAGVQHL-QNNIFSIKTQKTGTIITVELPDGFMKLLA---MTPIGK 252 E L SGLR S+ + + ++ F T K G V L +L+ Sbjct: 136 ELLYGSGLRASELVTLPLSAVPRDAPFLTITGKGGKERLVPLGTRARAVLSRWLAVRPEG 195 Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHELMA 309 + + + + + KA A ++G++ S H +R AT + GA L Sbjct: 196 SPWLFPSRGKHLTRIRLYQLLKALAERSGIDPAKISPHVLRHAFATHLLEGGADLRALQT 255 Query: 310 TYGWKTVDQAETYTKGADRIRLGIKNSR 337 G + + YT + + N R Sbjct: 256 LLGHADIATTQIYTHVESARLVALVNER 283 >gi|167461250|ref|ZP_02326339.1| phage integrase family protein [Paenibacillus larvae subsp. larvae BRL-230010] gi|322382057|ref|ZP_08055993.1| site-specific tyrosine recombinase XerC-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321153972|gb|EFX46316.1| site-specific tyrosine recombinase XerC-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 301 Score = 112 bits (281), Expect = 6e-23, Method: Composition-based stats. Identities = 46/293 (15%), Positives = 93/293 (31%), Gaps = 33/293 (11%) Query: 58 REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT-- 115 R+ K T++ I L + + S I D+++ Sbjct: 2 RKATGISEKGDQTIQDFIHALTTH---EDLNPKTLKEYASDLKHFIGWFETADHQEEEVL 58 Query: 116 -----------TKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP 164 T++ + + K P++ + L +++ F+WAV NP V+ Sbjct: 59 FRIEDVATPTLTRYRETAQKVMKLKPATINRRLITLKRFFEWAVS----ESNPSKPVKLV 114 Query: 165 KRKTEGIRPWTKEDMQQFKSFWSEG--SQPRLAFEFLLYSGLRCSDSCRAGVQHL----Q 218 + R T ++ + G + + + ++GLR + C + + Sbjct: 115 PEEKISPRQMTDKEEAALIAASEHGGSLRDQTILILMFHTGLRTMEVCDLAPGDIQIGKR 174 Query: 219 NNIFSIKTQKTGTIITVELP----DGFMKLLAMTPIGKETFFIN-NDKQKMNATQFSIWF 273 ++++ K V L K LA+ P F + ++ Sbjct: 175 RGQLTVRSGKRNKQREVPLNATCRAALEKYLAVHPSDSPYLFPSEKTGDRLTERALRHLI 234 Query: 274 KAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 + A + SAH +R + A+ H L G ++D Y K Sbjct: 235 QKYMKSARLKGLSAHDLRHRFGYVMAEN-TPLHRLAQIMGHDSLDTTMIYVKA 286 >gi|116254508|ref|YP_770344.1| putative phage integrase protein [Rhizobium leguminosarum bv. viciae 3841] gi|115259156|emb|CAK10271.1| putative phage integrase protein [Rhizobium leguminosarum bv. viciae 3841] Length = 303 Score = 112 bits (281), Expect = 7e-23, Method: Composition-based stats. Identities = 43/268 (16%), Positives = 94/268 (35%), Gaps = 23/268 (8%) Query: 74 LISEYRKSAHWGSLAVNSRISFE---SYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130 L + + ++N+++++ S F + KS D R+ + +K P Sbjct: 15 LRQRMSEDMQVRNFSLNTQLAYLQQVSLFARYFSKSPDLLGREDVRIYQVYLANEKKLAP 74 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 SS ++++R L+K + +++V P + PK+ + + +++Q F + Sbjct: 75 SSIHTAISALRFLYKVTLERDWV---PEEVLPLPKKPQKLPIILSPDEVQHFLGCVLDPK 131 Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLLA-- 246 +GLR S++ + + + ++ K V L +++L Sbjct: 132 H-HAILTTCYAAGLRISEAVQLKPTDIDSQRMVVRVEQGKGQKDRYVMLSPKLLEILRDY 190 Query: 247 -MTPIGKETFFINND-KQKMNATQFSIWFKAKATKA------GVNKSAHGVRKFSATISA 298 K F + Q + KA + H +R A Sbjct: 191 WKMRRPKAWLFPGDRAGQPITRDAVG----EACAKAHNLSRLSKPVTPHSLRHAFAVHLL 246 Query: 299 DAGATAHELMATYGWKTVDQAETYTKGA 326 +AGA + G +++ Y + A Sbjct: 247 EAGADVRTIQLLLGHRSLATTAHYLRIA 274 >gi|56419747|ref|YP_147065.1| site-specific tyrosine recombinase XerC [Geobacillus kaustophilus HTA426] gi|56379589|dbj|BAD75497.1| integrase/recombinase [Geobacillus kaustophilus HTA426] Length = 289 Score = 112 bits (281), Expect = 7e-23, Method: Composition-based stats. Identities = 41/272 (15%), Positives = 84/272 (30%), Gaps = 26/272 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE------SRKHTPSSAIQFLT 138 + + + + + +Q R + + ++ S + ++ Sbjct: 8 KNYSQYTIVCYRRDIEQFFRFMDEEGIGALNEVSYSDVRLYLTKLYEQQLASRSVARKIS 67 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK----SFWSEGSQPRL 194 S+R +K+ +R+ A NP PK++ + ++++ + G + Sbjct: 68 SLRSFYKFLLREGRAAENPFALATLPKKEQKIPNFLYPKELEALFLVNDENTALGQRNAA 127 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVE------------LPDGF 241 E L +G R S+ C + + + K V + G Sbjct: 128 LLELLYATGARVSECCHIQLSDVDFVAETVLIHGKGNKQRYVPFGRPAREALERYIHRGR 187 Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISAD 299 +L P F+N + A + N S H +R AT + Sbjct: 188 RELTRKLPADHRYLFVNARGNPLTPRGVRHILDRIVEAAALTQNISPHVLRHTFATHLLN 247 Query: 300 AGATAHELMATYGWKTVDQAETYTK-GADRIR 330 GA + G + + YT DR+R Sbjct: 248 EGADLRSVQELLGHAHLSSTQVYTHVTKDRLR 279 >gi|242279145|ref|YP_002991274.1| integrase family protein [Desulfovibrio salexigens DSM 2638] gi|242122039|gb|ACS79735.1| integrase family protein [Desulfovibrio salexigens DSM 2638] Length = 307 Score = 112 bits (281), Expect = 7e-23, Method: Composition-based stats. Identities = 49/287 (17%), Positives = 100/287 (34%), Gaps = 33/287 (11%) Query: 85 GSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESRKH--TPSSAIQFLTSM 140 SL+ + ++ Q + + I + IR+ + + H P + + L ++ Sbjct: 18 RSLSSLTLQAYRKDLSQFGETIDLNNVEVINIDKESIRTYLSNINHNYKPKTLKRKLATL 77 Query: 141 RVLFKWAVRQEYVAINP----------CLSVERPKRKTEGIRPWTKE--DMQQFK---SF 185 + F + R++ + +P + + ++T R + ++F Sbjct: 78 KSFFNFLEREDLIPFSPFRKLHIKIDRSKELPKIIKETSLSRILKYAYLEKEKFDHKSKA 137 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN-NIFSIKTQKTGTIITVEL------- 237 + E ++ E L +G+R S+ C + N I K + L Sbjct: 138 YREITRDICVIELLFATGIRVSELCSISPSEIDLKNKKLIINGKGNKQRLIPLCENNSLK 197 Query: 238 -PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSA 294 + L +FF+N D + ++ K + AGV ++ H R A Sbjct: 198 ILKEYSLLYQYALHDSTSFFLNRDLKPLSDQSVRRIIKKYSEIAGVTETITPHMFRHTIA 257 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTK---GADRIRLGIKNSRR 338 T+ + G + G ++ E YT + R L K+ RR Sbjct: 258 TMLLENGVDIRNIQTLLGHSSLSVTEIYTHVSLSSQRDILAKKHPRR 304 >gi|283768283|ref|ZP_06341195.1| phage integrase, N-terminal SAM domain protein [Bulleidia extructa W1219] gi|283104675|gb|EFC06047.1| phage integrase, N-terminal SAM domain protein [Bulleidia extructa W1219] Length = 297 Score = 112 bits (281), Expect = 7e-23, Method: Composition-based stats. Identities = 46/280 (16%), Positives = 94/280 (33%), Gaps = 29/280 (10%) Query: 77 EYRKSA----HWGSLAVN----SRISFESYFDQIIRKSGDFDY-------RKITTKHIRS 121 +Y+KS + LA + ++ + I + ++ + Sbjct: 2 DYKKSLKSFLDYIRLARTGSLHTEKAYRRDVENFIAYLEKKKIHTWKRVDKNFLLEYFTT 61 Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM-- 179 + + SS + L+S+R F++ E + NP S + K T + + Sbjct: 62 LRQKNHLSNSSYDRHLSSLRSFFRYLNVVEGIGHNPMSSFKNVKTSRPLPEYLTVDQVQD 121 Query: 180 --QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-- 235 F +G + R E L GLR S+ +Q + + ++ + + Sbjct: 122 LLDSFDLEDKKGLRNRCIVELLYACGLRISECANIKIQDIHFRDYYVRVMGKESKERIVP 181 Query: 236 ---ELPDGFMKLLAMTPIGK---ETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAH 287 EL D K L + FF + + ++ + + K + + H Sbjct: 182 FYKELGDLLTKYLKKYGSFSQLSDPFFKGSKGKAISVRSIQLLLEKKGRELKLPFQLHPH 241 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 +R AT D GA + + G + + + YT + Sbjct: 242 VLRHSFATHLLDNGADLRIVQSLLGHENLSTTQIYTHVSQ 281 >gi|312143561|ref|YP_003995007.1| integrase family protein [Halanaerobium sp. 'sapolanicus'] gi|311904212|gb|ADQ14653.1| integrase family protein [Halanaerobium sp. 'sapolanicus'] Length = 311 Score = 112 bits (281), Expect = 7e-23, Method: Composition-based stats. Identities = 38/263 (14%), Positives = 88/263 (33%), Gaps = 28/263 (10%) Query: 89 VNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES----RKHTPSSAIQFLTSMRVLF 144 N Y + + +F + I + + + + L ++R + Sbjct: 34 ENDLQQLYRYLKEELDFPEEFKPEDVDRLDIAEFLADAVIVNDNKAITRNRKLFAIRSFY 93 Query: 145 KWAVRQEYVAINPCLSVERPKRKTE-GIRPWTKEDMQQFKSFWSE-----GSQPRLAFEF 198 K+ +R + NP +++ K T+ ++ Q+F + + + + Sbjct: 94 KYLLRYGVIEKNPAEAIDSSKTDTKLEPIYLKLKEAQKFIAAIDDKDNINRLRDIAITKL 153 Query: 199 LLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF- 255 LY+GLR S+ ++ + K V L + + L + T Sbjct: 154 FLYAGLRISELVNLDFDNVDFEDGSIKFY-GKGSKERYVPLHNDVTEALKRYLKERNTIK 212 Query: 256 ----------FINNDKQKMNATQFSIWFKAKATKAGVNK----SAHGVRKFSATISADAG 301 F++ ++++ ++ K A KAG+++ + H +R A++ Sbjct: 213 IKDQDARQAIFLSRHGRRISPRTIQLFVKKYAKKAGLSRADKITPHKLRHTFASMLYRQT 272 Query: 302 ATAHELMATYGWKTVDQAETYTK 324 L G + + YT Sbjct: 273 KDIKVLQDLLGHANISTTQIYTH 295 >gi|298528009|ref|ZP_07015413.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1] gi|298511661|gb|EFI35563.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1] Length = 390 Score = 112 bits (281), Expect = 7e-23, Method: Composition-based stats. Identities = 51/326 (15%), Positives = 106/326 (32%), Gaps = 22/326 (6%) Query: 19 GKIIYYFR----KGHGRRIRLPYPHESTFIPAYMSALTGSTPK-----REYINSPRKKPT 69 GK YY R G ++++L P + A A + + K Sbjct: 41 GKATYYLRYRDNTGQLKQVKLGTPETLSLDEARTRARATKSQTLIGFDPKAEQEKIKAIP 100 Query: 70 TLKWLI-SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR-- 126 T K + Y + + + +++R G I T + + Sbjct: 101 TFKDFVYDSYL--PYAKTYKKSWEQDQTMIEQRMLRVWGRRKLNSINTHDLIEFQNNLVK 158 Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 S +++ ++ +F A R E + P + + + R +E++ + Sbjct: 159 GGLKAGSVNRYMALVKYIFNLAERWEIIDKAPTRNARKLEDNGARERYLNQEEVYRLLEA 218 Query: 186 WSEGSQPRLA--FEFLLYSGLRCSDSCRAGVQHLQNNIFSI----KTQKTGTIITVELPD 239 + + EFLL +G R +++ Q + + K G TV L + Sbjct: 219 LNSCKSQVVPDLIEFLLLTGARKTEAAELTWQEVDMERGIWELPAQRNKAGKPKTVPLSE 278 Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISA 298 +K+L + N + F + +AG+ H +R A+ Sbjct: 279 AAIKVLKRRADNGSRWVFPNPETGKPLRHFHNTWDRIRKQAGIPSARLHDLRHSFASFLV 338 Query: 299 DAGATAHELMATYGWKTVDQAETYTK 324 ++G + +E+ G + + Y Sbjct: 339 NSGRSLYEVQKLLGHSQLSTTQRYAH 364 >gi|307149687|ref|YP_003890995.1| integrase family protein [Cyanothece sp. PCC 7822] gi|306986753|gb|ADN18630.1| integrase family protein [Cyanothece sp. PCC 7822] Length = 286 Score = 112 bits (281), Expect = 7e-23, Method: Composition-based stats. Identities = 46/252 (18%), Positives = 86/252 (34%), Gaps = 14/252 (5%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT--PSSAIQFLTSMRV 142 + +SR S+ + +IT I + P+S + L +++ Sbjct: 20 HGKSPDSRRSYMRDIQDFLE-FTHKPIEQITIADIIDWDSALALRYAPTSRKRKLAAIKS 78 Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTE-GIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY 201 LF +A + E ++ NP +V PK K R T+++ ++ L L Sbjct: 79 LFSFAHKNELISTNPGAAVPSPKTKDAISERILTEDEWERMLYAEPNRQHQ-LMLTLLYE 137 Query: 202 SGLRCSDSCRAGVQHLQ---NNIFSIKTQKTGTIIT-VELPDGFMKLLAMTPI----GKE 253 + R S+ C + ++ + + G V + ++L T G Sbjct: 138 TRARVSEFCALKWKDIREKPDGAALVTLFGKGNKTRKVTITPQLWQVLKATKAADAKGDS 197 Query: 254 TFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYG 312 F+N + + Q KA + G+ S H +R AT G+ H G Sbjct: 198 PLFLNYRHKAYSTVQVWRIVKAAGERVGIYGVSPHWIRHTGATHQLINGSPLHLQQQELG 257 Query: 313 WKTVDQAETYTK 324 ++ Y Sbjct: 258 HSGLNTTSKYLH 269 >gi|322417793|ref|YP_004197016.1| integrase family protein [Geobacter sp. M18] gi|320124180|gb|ADW11740.1| integrase family protein [Geobacter sp. M18] Length = 402 Score = 112 bits (281), Expect = 7e-23, Method: Composition-based stats. Identities = 44/239 (18%), Positives = 87/239 (36%), Gaps = 17/239 (7%) Query: 106 SGDFDYRKITTKHIRSG--VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER 163 G IT++ + E + + ++A L++++ + AV+ E + NP S E+ Sbjct: 146 FGKQRLSGITSRDVALLCSKEKARTSATTANHLLSTLKRMLNLAVKWELLEKNPASSQEK 205 Query: 164 PKRKTEGIRPWTKEDMQQFKSFWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHL--QN 219 K + R +K+++ +F S E A LL++G R + + Sbjct: 206 FKEPPQRERYLSKDELPRFLSALDEEDDGLSVAAIRMLLFTGCRRGEVLSLKWNEVRLDE 265 Query: 220 NIFSIKTQKTGTIITVELPDGFMKLLAMTP---------IGKETFFINNDKQKMN-ATQF 269 + + K G V L ++ E F + K Sbjct: 266 DCILLLDTKNGRSRMVHLNARAKAVVEELHENRDKEVRTAASEYVFPSRQGTKKGHLFDL 325 Query: 270 SIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 F+ +AGV N H +R A+++ GA+ ++ G + + + Y +D Sbjct: 326 RKPFEKACQRAGVENFRIHDLRHTFASMAVRGGASLFDVQKLLGHQDIAMTQRYAHLSD 384 >gi|84517230|ref|ZP_01004585.1| Phage integrase [Loktanella vestfoldensis SKA53] gi|84508905|gb|EAQ05367.1| Phage integrase [Loktanella vestfoldensis SKA53] Length = 445 Score = 112 bits (281), Expect = 7e-23, Method: Composition-based stats. Identities = 63/354 (17%), Positives = 115/354 (32%), Gaps = 26/354 (7%) Query: 6 RLPPFVTKERTRHGKIIYYFR----KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYI 61 R + E G + YY R + R I+L + T A I Sbjct: 28 RRVKGLVLEVRTSGGMTYYMRYTDDRSKTRYIKLANVGDITLPQARGLCRQHRNKLALGI 87 Query: 62 NSPRKKPT-----TLKWLI-SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT 115 + ++ T + Y A + + + + + G +IT Sbjct: 88 DPLAERAVKRLVPTFGDFVRERYLPFAQANKRSWKTDETLART--HLTPQLGTMHMDEIT 145 Query: 116 TKHIRSGVE---SRKHTPSSAIQFLTSMRVLFKWAVRQEY----VAINPCLSVERPKRKT 168 + + S + P+S + L +R +F A +++ V NP V K Sbjct: 146 IEDVLSLQQIGLKAGAAPASINRRLILLRYMFNLAW-RDWKIAGVTGNPTHGVRLLKENN 204 Query: 169 EGIRPWTKEDMQQFKSFWSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQN--NIFSI 224 + R E++ E L FLL +G R ++ A + + ++ I Sbjct: 205 QKERYVRAEELALLYRAVKESQNKMLQHIVAFLLLTGTRRNEVLHATWEDVDLIKGMWRI 264 Query: 225 KTQKTGTIITVELPDGFMKLLA-MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV- 282 K+G V L DG +L M + + N K + + KAG+ Sbjct: 265 PQTKSGFARHVPLNDGAYAVLQQMQGRSQSHYIFGNPKTGKPYVHVWYAWNSARVKAGLP 324 Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336 + H +R A++ + G + +E+ G + + Y L N Sbjct: 325 DVRLHDLRHTFASLLINNGRSIYEVQKLLGHTQIKTTQRYAHLTQETLLDASNI 378 >gi|316985480|gb|EFV64427.1| tyrosine recombinase XerC [Neisseria meningitidis H44/76] Length = 329 Score = 112 bits (281), Expect = 7e-23, Method: Composition-based stats. Identities = 38/274 (13%), Positives = 84/274 (30%), Gaps = 20/274 (7%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD---YRKITTKHIRSGVES-- 125 L + Y ++ + ++ ++ +++ + T + Sbjct: 34 LAAYLDAYLENIVREGKSEHTVAAYRRDLQELLALLEEMPSANPSNCTRGDFVQALRRLS 93 Query: 126 -RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 R + + L+S R W V++ + +P ++ PK+ + +E + + Sbjct: 94 GRGLGERTLARKLSSWRQYCVWLVKRGLMHADPTADIKPPKQPERVPKALPQEWLNRMLD 153 Query: 185 F-----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELP 238 + FE + SGLR S+ + + + G V L Sbjct: 154 LPVDGGDPLAVRDHALFELMYGSGLRVSEIHGLNADDVYLDEAWVHVIGKGRKQRQVPLV 213 Query: 239 ----DGFMKLL--AMTPIGKETFFINNDKQKMNATQFSIWFKAKATK--AGVNKSAHGVR 290 + L T + F + +++ Q A + G + S H +R Sbjct: 214 GKSVEALKNYLPLRQTASDGKALFTGRNGTRLSQRQIQKRLAQWAAQNGDGRHVSPHMMR 273 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK 324 A A + G ++ + YTK Sbjct: 274 HSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTK 307 >gi|220925261|ref|YP_002500563.1| integrase family protein [Methylobacterium nodulans ORS 2060] gi|219949868|gb|ACL60260.1| integrase family protein [Methylobacterium nodulans ORS 2060] Length = 588 Score = 112 bits (281), Expect = 7e-23, Method: Composition-based stats. Identities = 68/355 (19%), Positives = 117/355 (32%), Gaps = 75/355 (21%) Query: 54 STPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG-DFDYR 112 T +R + +SP++ TL LISE+ K G+ + + F + G D + + Sbjct: 225 DTARRSHDSSPKR---TLNALISEFEKDPGRGARTGKTNTDYRMVFTAMREIIGPDTEVQ 281 Query: 113 KITTKHIRSGVESRKHTPSSA-----------------------------IQFLTSMRVL 143 I+ +H + + P +A LT M + Sbjct: 282 SISREHTKRVRDLFLALPPNATKRFPGMTLLQAGELAQRNRLATLNIQTINSHLTKMSTM 341 Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW--------------SEG 189 F WA+++E++ NP + + + P+ E ++ S G Sbjct: 342 FNWAIKEEWIGRNPASGLAIDEVQKNKREPFDLEQLRAIFSAPIYAGCQDDEAGYAKPGG 401 Query: 190 SQPRLAF----EFLLYSGLRCSDSCRAGVQHLQNN----IFSIKT--------QKTGTII 233 S PR A L+ GLR +++C+ V+ L + ++ K GT I Sbjct: 402 SHPRRARFWVPLLSLFHGLRLNEACQLRVEDLAERNGITVLHVRAADADQRIKSKAGTRI 461 Query: 234 TVELPDG-----FMKLLAMTPIGKETFF---INNDKQKMNATQFSIWFKAK---ATKAGV 282 V L F+ + P+ + + D + + F WF A Sbjct: 462 -VPLHPEVIKIGFVDYVRDLPVEGDGRIFPELQKDTRGYYSDAFQKWFSRFLHSCGAAKT 520 Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 H R A +AG A GW + Y KG L ++ Sbjct: 521 GTKFHSFRHGWADRLREAGVPEDRRRALGGWASTGADAGYGKGFPTRILAEDIAK 575 >gi|259507532|ref|ZP_05750432.1| tyrosine recombinase XerC [Corynebacterium efficiens YS-314] gi|259164917|gb|EEW49471.1| tyrosine recombinase XerC [Corynebacterium efficiens YS-314] Length = 296 Score = 112 bits (281), Expect = 7e-23, Method: Composition-based stats. Identities = 37/265 (13%), Positives = 92/265 (34%), Gaps = 19/265 (7%) Query: 86 SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFLTSMRV 142 + + + S + D + T ++R+ + + ++ + S++ Sbjct: 26 GRSDATVRGYRSDLRHMAATIPD--LTEFTLPNLRAWLGRAVEEGKSRATLARRTASVKS 83 Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS-----QPRLAFE 197 WAV+ ++ + + PK R + +F + + + E Sbjct: 84 FSTWAVKNGLISGDEAARLVSPKVTRNLPRVLGEVQAGEFMGSAAADTEDEFRRDSAILE 143 Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVEL-------PDGFMKLLAMTP 249 L +G+R S+ C + + ++ ++ K + + +++ Sbjct: 144 LLYATGMRVSELCGLDLGDVDHHRRMVRVLGKGDKERMIPFGKAAADALEQWLEARDRMA 203 Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELM 308 ++ F+ +++A Q A AG + S H +R +AT D GA ++ Sbjct: 204 KVEDAMFVGVRGGRIDARQIRRIVDRTAQVAGADHLSPHSLRHTAATHLLDGGADLRQVQ 263 Query: 309 ATYGWKTVDQAETYTKGADRIRLGI 333 G ++ + YT + + L Sbjct: 264 EMLGHSSLQTTQIYTHVSSQRLLEA 288 >gi|229075069|ref|ZP_04208071.1| DNA integration/recombination/invertion protein [Bacillus cereus Rock4-18] gi|228708126|gb|EEL60297.1| DNA integration/recombination/invertion protein [Bacillus cereus Rock4-18] Length = 369 Score = 112 bits (281), Expect = 7e-23, Method: Composition-based stats. Identities = 48/312 (15%), Positives = 107/312 (34%), Gaps = 38/312 (12%) Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVE 124 TLK ++ + + S+ ++ + + ++ + +I G K+ HI+ + Sbjct: 60 PSKVTLKEYLNHWLEIKS-MSIERSTFVGYRAFINQHVIPSIGMVALHKLNVMHIQKCYK 118 Query: 125 SRKHTPSSAIQFLTSMRVL---FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 + + L + R+L AV+Q ++ NP E PK++ I+ WT+E++++ Sbjct: 119 TAMDKGIANNSILLTHRILKSALNLAVKQNIISQNPAAFAEIPKKERTSIQTWTEEEVKK 178 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--------------NNIFSIKTQ 227 F S+ S+ + + + +G+R + Q + +N + Sbjct: 179 FL-LHSQESRYHIGYLLAITTGMRMGEVLGLRWQDVDFEKHTVTINQTSGHDNKIKKTAK 237 Query: 228 KTGTIITVELPDGFMKLLAMTPI--------------GKETFFINNDKQKMNATQFSIWF 273 + T+ +P ++ L I + N + F F Sbjct: 238 TNSSKRTIPVPRETIESLKRHKITINKEKLRFGSAYQDFDLINCNEFGMIIKKANFRKNF 297 Query: 274 KAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGADRIRL 331 AG+ + H +R ATI G + G + Y+ + Sbjct: 298 IRATHNAGIKEIKFHDLRHTHATILLKQGVNPKIISERLGHTDISLTLSVYSHVL--PNM 355 Query: 332 GIKNSRRISSVV 343 + + + Sbjct: 356 QEEAVKNFGKSI 367 >gi|296163709|ref|ZP_06846425.1| integrase family protein [Burkholderia sp. Ch1-1] gi|295886049|gb|EFG65951.1| integrase family protein [Burkholderia sp. Ch1-1] Length = 321 Score = 112 bits (281), Expect = 7e-23, Method: Composition-based stats. Identities = 45/302 (14%), Positives = 96/302 (31%), Gaps = 37/302 (12%) Query: 43 FIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI 102 F+ Y+ L + + + S +E R + L + +++ Y Sbjct: 3 FVKGYLDWLAVTGRTEQTVRSRLVALERFVRWCAE-RSLSRPQELTRSVLEAYQRYLYLY 61 Query: 103 IRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE 162 ++ G + T + LT +R +W R+ +V N + Sbjct: 62 RKQDG------------------KPLTIRTQQTMLTPLRGWCRWLSRERHVQYNAAAELV 103 Query: 163 RPKRKTEGIRP-WTKEDMQQFKSFWSEG----SQPRLAFEFLLYSGLRCSDSCRAGVQHL 217 P+ + + +++ G ++ R E L +G+R + + + Sbjct: 104 LPRAPKLLPKVVLSVVQVERLMDQPDVGGLTGARDRAILEVLYSTGMRRMELIGLTISDI 163 Query: 218 Q--NNIFSIKTQKTGTIITVELPDGFMKLL----------AMTPIGKETFFINNDKQKMN 265 I+ K + L + + + T F+ + + Sbjct: 164 DLSGGTVMIRQGKGRRDRYIPLGERACYWVEWYCDRIRPSHAVRADEWTLFLTDYGEPFG 223 Query: 266 ATQFSIWFKAKATKAGVNKSA-HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 + S K +AG+ + A H +R AT + GA + A G + + YT+ Sbjct: 224 KGRLSDLVKRYMERAGIREGACHVLRHACATHMLENGADIRFIQALLGHADLSSTQIYTQ 283 Query: 325 GA 326 A Sbjct: 284 VA 285 >gi|307300528|ref|ZP_07580308.1| tyrosine recombinase XerD [Sinorhizobium meliloti BL225C] gi|306904694|gb|EFN35278.1| tyrosine recombinase XerD [Sinorhizobium meliloti BL225C] Length = 311 Score = 112 bits (281), Expect = 7e-23, Method: Composition-based stats. Identities = 47/282 (16%), Positives = 97/282 (34%), Gaps = 29/282 (10%) Query: 72 KWLISEYRKS-AHWGSLAVNSRISFESYFDQII-----RKSGDFDYRKITTKHIRSGVES 125 + + + + A N+ S+E + R +G D + S + Sbjct: 6 AAYVEAFLEMMSAERGAAANTLQSYERDLEDARSFLRSRGTGLTDASADDLRSYLSHLAG 65 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF--- 182 + SS + L+++R +K+ + +P ++ PK+ + + ED+ + Sbjct: 66 QGFKASSQARRLSALRQFYKFLYAEGLRTDDPTGILDAPKKARTLPKTLSIEDVTRLIGQ 125 Query: 183 -KSFWSEGS-------QPRLAFEFLLYSGLRCSDSCRAGVQHL-QNNIFSIKTQKTGTII 233 ++ GS + E L +G+R S+ L QN F I K Sbjct: 126 AEAEAKSGSDDVMAKLRMHALIELLYATGMRVSELVSLPASVLAQNGRFLIIRGKGNKER 185 Query: 234 TVELPDGFMKLLAMTP------IGKETFFINNDKQ--KMNATQFSIWFKAKATKAGVNKS 285 V L ++ + + ++ + + F+ K+ A +AG+ + Sbjct: 186 LVPLSQAAIRAMRAYGEALQEESADSPWLFPSNGKSGHLPRQVFARDLKSLAARAGIRVA 245 Query: 286 A---HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 A H +R A+ GA + G + + YT Sbjct: 246 AIWPHVLRHAFASHLLANGADLRAVQELLGHSDISTTQIYTH 287 >gi|85373646|ref|YP_457708.1| site-specific recombinase, phage integrase family protein [Erythrobacter litoralis HTCC2594] gi|84786729|gb|ABC62911.1| site-specific recombinase, phage integrase family protein [Erythrobacter litoralis HTCC2594] Length = 398 Score = 112 bits (280), Expect = 7e-23, Method: Composition-based stats. Identities = 58/341 (17%), Positives = 115/341 (33%), Gaps = 37/341 (10%) Query: 17 RH---GKIIYYFRKGHGRRIRLPYPHESTFIPAYMS--------ALTGSTPKREYINSPR 65 RH G+ +Y + R+R ++ + Y + A Sbjct: 46 RHYPSGRNVYIVQTRMAGRMRTVTIGPTSVLTRYQAQMVARRVIAYAQVGRDPATERQRI 105 Query: 66 KKPTTLKWLISEY--RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123 + + ++EY R + W + + + + + ++ H+ S Sbjct: 106 RSAPSFADFVTEYWDRWAPRWKASTLETHTGYRR--RYLDDAFVGVYIDELNEGHVTSWF 163 Query: 124 ESRKH--TPSSAIQFLTSMRVLFKWAVRQEYV--AINPCLSVERPKRKTEGIRPWTKEDM 179 + P ++ + ++ + A Y NPC SV RP RK + R T +++ Sbjct: 164 ADLNNLTGPGASNRTFEILKHMLNKAEDWGYRLENTNPCRSV-RPNRKRQCERFLTNDEL 222 Query: 180 QQFKSFWS--EGSQPR------LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231 + + + S+ R A LL +G R S+ ++ N ++ KTG Sbjct: 223 ARLGAELTNLRASEDRTKQCSGAAITLLLLTGCRKSEILTLEWTDIKGNRLHLRDSKTG- 281 Query: 232 IITVELPDGFMKLLAMTPIGKE---TFFINNDKQK-MNATQFSIWFKAKATKAGV-NKSA 286 TV L +++A P + F+ ++ F + +AG+ + Sbjct: 282 PRTVWLGSAAREVIAALPRFERIPYPFWNYRYRKPLRCVNGFWRRLRD---EAGLPDVRI 338 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 H +R A+ +A T + G V Y D Sbjct: 339 HDLRHTFASHAAMNKETLPMIGRLLGHANVQTTARYAHFDD 379 >gi|26991906|ref|NP_747331.1| site-specific tyrosine recombinase XerC [Pseudomonas putida KT2440] gi|34222832|sp|Q88CF1|XERC_PSEPK RecName: Full=Tyrosine recombinase xerC gi|24987029|gb|AAN70795.1|AE016723_7 integrase/recombinase XerC [Pseudomonas putida KT2440] Length = 299 Score = 112 bits (280), Expect = 7e-23, Method: Composition-based stats. Identities = 35/259 (13%), Positives = 86/259 (33%), Gaps = 19/259 (7%) Query: 85 GSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFLT 138 ++ ++ + +++ + G D++ + + +R + +P S + L+ Sbjct: 16 RQVSEHTSQGYRRDLEKVIAYCEEHGIADWQALQIQQLRQLIARLHHHGQSPRSLARLLS 75 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW-TKEDMQQFKSFWS---EGSQPRL 194 ++R L+++ R+ +P + PK + + T +Q + + Sbjct: 76 AVRGLYRYLNREGLCQHDPANGLSAPKGERRLPKVLDTDRALQLLDGGVDDDFIARRDQA 135 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPI--- 250 E SGLR S+ + HL ++ K G + + + L Sbjct: 136 ILELFYSSGLRLSELTNLDLDHLDLAAGLVQVLGKGGKARVLPVGRKAREALQAWYRLRG 195 Query: 251 ----GKETFFINNDKQKMNATQFSIWFKAK-ATKAGVNKSAHGVRKFSATISADAGATAH 305 FI +++ + K + G + H +R A+ ++ Sbjct: 196 IGNPRDRAVFITRQGNRISPRAVRLRVKVAGERELGQHLHPHMLRHSFASHVLESSQDLR 255 Query: 306 ELMATYGWKTVDQAETYTK 324 + G + + YT Sbjct: 256 AVQEMLGHADISTTQIYTH 274 >gi|308051404|ref|YP_003914970.1| tyrosine recombinase XerC [Ferrimonas balearica DSM 9799] gi|307633594|gb|ADN77896.1| tyrosine recombinase XerC [Ferrimonas balearica DSM 9799] Length = 296 Score = 112 bits (280), Expect = 7e-23, Method: Composition-based stats. Identities = 38/261 (14%), Positives = 93/261 (35%), Gaps = 21/261 (8%) Query: 85 GSLAVNSRISFESYFDQ---IIRKSGDFDYRKITTKHIRSGV---ESRKHTPSSAIQFLT 138 + + ++ ++ +++ G D++ + T+H ++ + + +P S L+ Sbjct: 16 RQYSAYTVRNYLKELERALPLLQAQGLTDWQGLRTQHCQALLAKLHRQGLSPRSLSLTLS 75 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS---QPRLA 195 ++R L K+ +R+ + +P + V+ PK+ + + + + + + R Sbjct: 76 ALRQLIKFLLREGTLTHDPMVGVQAPKQGRPLPKNLDVDQVNRLLELNDDDPLVIRDRAM 135 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVEL----PDGFMKLLAMTPI 250 E SGLR ++ L ++ K G + + + K LA+ P Sbjct: 136 MELFYSSGLRLAELVALDCPQLSLTDREVRVMGKGGKERILPVGNKASEWLAKYLALRPA 195 Query: 251 -----GKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGAT 303 F++N +++ ++ H +R AT +A Sbjct: 196 LLKGKECAALFLSNRGSRISRRSVQARLTEWGQSQALDSKVHPHKLRHSFATHLLEASKD 255 Query: 304 AHELMATYGWKTVDQAETYTK 324 + G + + YT Sbjct: 256 LRAVQELLGHANLSTTQIYTH 276 >gi|301054011|ref|YP_003792222.1| DNA integration/recombination/invertion protein [Bacillus anthracis CI] gi|300376180|gb|ADK05084.1| DNA integration/recombination/invertion protein [Bacillus cereus biovar anthracis str. CI] Length = 282 Score = 112 bits (280), Expect = 7e-23, Method: Composition-based stats. Identities = 43/276 (15%), Positives = 89/276 (32%), Gaps = 36/276 (13%) Query: 101 QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVL---FKWAVRQEYVAINP 157 I G K+ HI+ ++ + L R+L AV+Q ++ NP Sbjct: 8 AIKPSIGMVALYKLNVMHIQKCYKTAIDRGIANNSVLLMHRILKSALNLAVKQNIISRNP 67 Query: 158 CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL 217 E PK++ I+ WT+E++++F S+ S+ + + + +G+R + Q + Sbjct: 68 ADFAEIPKKERTSIQTWTEEEVKKFL-LHSQESRYHIGYLLAITTGMRMGEVLGLRWQDV 126 Query: 218 Q--------------NNIFSIKTQKTGTIITVELPDGFMKLLAMTPI------------- 250 +N + + T+ +P ++ L + Sbjct: 127 DFEKHTVTINQTSGHDNQIKKTAKTNSSKRTIPVPKETIESLKKHKVLINQEKLRLGSAY 186 Query: 251 -GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELM 308 + N + F F AG+ + H +R ATI G + Sbjct: 187 QDFDLINCNEFGMIIKKANFRKKFIRAIHNAGIKEIKFHDLRHTHATILLKQGVNPKIIS 246 Query: 309 ATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSVV 343 G + Y+ + + + + Sbjct: 247 ERLGHTDISMTLSVYSHVL--PNMQEEAVKNFGKSI 280 >gi|167920732|ref|ZP_02507823.1| phage-related integrase [Burkholderia pseudomallei BCC215] Length = 275 Score = 112 bits (280), Expect = 8e-23, Method: Composition-based stats. Identities = 49/270 (18%), Positives = 96/270 (35%), Gaps = 20/270 (7%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESRK 127 T + + Y + A ++ + D++ + I HIR ++ RK Sbjct: 3 TFRHVAERYLIEV-LPTKAAETQRTNLLQLDKLYQFFDCPPAPLDDIKPIHIRKYLDWRK 61 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAI-NPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 +P SA + + +F A NPC V K + +G + + + +K+ W Sbjct: 62 QSPVSANREIALFSHIFNKAREWGATDRPNPCSGVR--KHREKGRDVYVGDGL--YKAVW 117 Query: 187 SEGSQP-RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245 + P R A + +G R +D + + +++ SI+ KTGT + +E+ LL Sbjct: 118 EKADAPLREAMDLAYLTGQRPADVLKLDERDIRDGSVSIRQNKTGTRLRIEIVGELAALL 177 Query: 246 AMTPIGK-------ETFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKFSAT 295 K ++ + + F AG+ K +R + T Sbjct: 178 ERLARRKIEHNPRSTRLIVDELGRPLGRAALRFRFDRARDAAGIPKADFQFRDLRAKAGT 237 Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKG 325 + + + G +V E Y + Sbjct: 238 D-KEHASDLRGAQSLLGHGSVAMTEHYVRK 266 >gi|37525093|ref|NP_928437.1| site-specific tyrosine recombinase XerC [Photorhabdus luminescens subsp. laumondii TTO1] gi|37527552|ref|NP_930896.1| site-specific tyrosine recombinase XerC [Photorhabdus luminescens subsp. laumondii TTO1] gi|36784519|emb|CAE13419.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] gi|36786987|emb|CAE16061.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 370 Score = 112 bits (280), Expect = 8e-23, Method: Composition-based stats. Identities = 57/305 (18%), Positives = 104/305 (34%), Gaps = 32/305 (10%) Query: 64 PRKKPTTLKWLISEY---RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITT---K 117 P P +L L+ + R+ +W + + +F + G + IT + Sbjct: 24 PAHDPKSLYALLLRFVVWRQERNWSESTLKVQTHHTYHFILWATERGLYYAADITRPILE 83 Query: 118 HIRSGVESRKHT------PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171 + + + T + L ++V FKW +Q + NP +E P+ + Sbjct: 84 RYQRYLYQYRKTNGEPLSTRTQRTQLEPLKVWFKWLTKQNLILANPAADIELPRLEKHLP 143 Query: 172 R-PWTKEDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--FSI 224 R T ++ +Q + G + R E L +G+R + R V + +I Sbjct: 144 RYILTIDETEQILAQPDLTTLQGIRDRALMELLWSTGMRRGELTRLDVYSVDGKRKTVTI 203 Query: 225 KTQKTGTIITVELPDGFMKLLAM-----------TPIGKETFFINNDKQKMNATQFSIWF 273 + K + L + + L P K F + + A S Sbjct: 204 RQGKGNKDRVLPLGERALSWLQRYQQQVRPQLIVNPDVKALFVAMDGLDGLQANGISNLV 263 Query: 274 KAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 A G+ K H R AT + GA + A G +V+ + YT+ + R Sbjct: 264 TAYINAVGIEKKGACHLFRHAMATQMLENGADLRWIQAMLGHASVESTQVYTQVSIRALQ 323 Query: 332 GIKNS 336 + S Sbjct: 324 AVHAS 328 >gi|289624627|ref|ZP_06457581.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289651147|ref|ZP_06482490.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv. aesculi str. 2250] gi|298489345|ref|ZP_07007359.1| Tyrosine recombinase xerC [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298156136|gb|EFH97242.1| Tyrosine recombinase xerC [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 299 Score = 112 bits (280), Expect = 8e-23, Method: Composition-based stats. Identities = 37/259 (14%), Positives = 93/259 (35%), Gaps = 19/259 (7%) Query: 85 GSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIR---SGVESRKHTPSSAIQFLT 138 ++ ++ ++ ++ +K+ + + +H+R + + + S + L+ Sbjct: 16 RQVSPHTLEAYRRDLGKVLAYCQKAQLSSWNDLDIQHLRSFTARQHQQGQSSRSLARMLS 75 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRL 194 ++R +K+ R+ +P + PK + + + Q E + + Sbjct: 76 AVRGFYKYLNREGICQHDPANGLSPPKGERRLPKTLDTDRTAQLLDGGVEDDFLAHRDQA 135 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV--------ELPDGFMKLLA 246 E L SGLR S+ + L ++ G+ V + + ++ L A Sbjct: 136 ILELLYSSGLRLSELTGLNLDQLDLRDGLVQVLGKGSKTRVLPVGSKARQALEIWLPLRA 195 Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAK-ATKAGVNKSAHGVRKFSATISADAGATAH 305 +T + F++ +++ + KA + G N H +R A+ ++ Sbjct: 196 LTNPQDDAVFVSQQGKRLGPRTIQVRLKAAGERELGQNLHPHMLRHSFASHLLESSQDLR 255 Query: 306 ELMATYGWKTVDQAETYTK 324 + G + + YT Sbjct: 256 AVQELLGHADIKTTQIYTH 274 >gi|257887688|ref|ZP_05667341.1| phage integrase [Enterococcus faecium 1,141,733] gi|257823742|gb|EEV50674.1| phage integrase [Enterococcus faecium 1,141,733] Length = 301 Score = 112 bits (280), Expect = 8e-23, Method: Composition-based stats. Identities = 48/281 (17%), Positives = 100/281 (35%), Gaps = 34/281 (12%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFE---SYFDQIIRKSGDFDYRKITTKHIRSGVESRK 127 L++LI E + ++ ++E +F + +SGD D K +R + + Sbjct: 11 LRYLIVE-------RGYSEKTKEAYEEDILHFKHFLEESGDADLLKAEYFTVRVYLSALA 63 Query: 128 H-----TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 + +S + + S+R +++ +++E + NP V K+ R + + +MQ Sbjct: 64 DHRPSYSRNSISRKIASLRSFYQYLLKEEVIKENPFSYVHLKKKNLRLPRFFYENEMQAL 123 Query: 183 KSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVEL 237 + S + R E L SG+R S+ V + ++ + K L Sbjct: 124 FDSVAGDSTLDLRNRALLEVLYGSGIRLSECSNLLVSDIDFDSEVMLIHGKGNKERYAPL 183 Query: 238 ------------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS 285 +G L+ + F+N+ + + T K+ ++ Sbjct: 184 GSFAQDALQEYFTEGRQVLMTKYHEEHDIVFVNHHGKPITPTGIEYVLNQIIKKSSLDSD 243 Query: 286 --AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R AT + GA + G + + Y Sbjct: 244 IHPHMLRHTFATHLLNNGADLRTVQELLGHANLSTTQIYAH 284 >gi|224539317|ref|ZP_03679856.1| hypothetical protein BACCELL_04222 [Bacteroides cellulosilyticus DSM 14838] gi|224519064|gb|EEF88169.1| hypothetical protein BACCELL_04222 [Bacteroides cellulosilyticus DSM 14838] Length = 393 Score = 112 bits (280), Expect = 8e-23, Method: Composition-based stats. Identities = 48/280 (17%), Positives = 100/280 (35%), Gaps = 26/280 (9%) Query: 75 ISEYRKSAHWGSLAVNSRIS-FESYFDQIIRKSG-DFDYRKITTKHIRSGVESRK----- 127 +++Y +S R + + + R + D +I +I ++ K Sbjct: 105 LTDYIQSVAEKKSENEVRKTVLHAVVYHLRRYNPNDIQLSRIDKDYILGFLDYLKTAKQT 164 Query: 128 -------HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE---RPKRKTEGIRPWTKE 177 ++ + + +R +AV +E ++ NP ++ +P + T + Sbjct: 165 HTKKEKLLHVNTQVYYYKMLRYCLNYAVSEELISANPMNKIKNEEKPHKHRTEREYLTID 224 Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-----IFSIKTQKTGTI 232 ++++ + AF F + GLR SD ++ + I +KT Sbjct: 225 ELRKLAQTPFYNGLLKKAFLFSCFCGLRHSDIIALTWGDIEMDDDGNSRLYIIQKKTKEA 284 Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290 I++ L +K L KE I K+ + + + A +AG+ K + H R Sbjct: 285 ISLPLSQEAIKQLPKREDAKEDDII--FKKLITLGRTNEILPKWAEQAGIKKHITFHTAR 342 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 AT+ G + + G + + Y K D + Sbjct: 343 HTHATMLLTLGVDLYTVSKLLGHTNIQTTQIYAKLVDESK 382 >gi|331012748|gb|EGH92804.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 299 Score = 112 bits (280), Expect = 8e-23, Method: Composition-based stats. Identities = 37/259 (14%), Positives = 92/259 (35%), Gaps = 19/259 (7%) Query: 85 GSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIR---SGVESRKHTPSSAIQFLT 138 ++ ++ ++ ++ +K+ + + +H+R + + + S + L+ Sbjct: 16 RQVSPHTLEAYRRDLGKVLAYCQKAQLSSWNDLDIQHLRSFTARQHQQGQSSRSLARMLS 75 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRL 194 ++R +K+ R+ +P + PK + + Q E + + Sbjct: 76 AVRGFYKYLNREGICQHDPANGLSPPKGDRRLPKTLDTDRTAQLLDGGVEDDFLAHRDQA 135 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV--------ELPDGFMKLLA 246 E L SGLR S+ + L ++ G+ V + + ++ L A Sbjct: 136 ILELLYSSGLRLSELTGLNLDQLDLRDGLVQVLGKGSKTRVLPVGSKARQALEIWLPLRA 195 Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAK-ATKAGVNKSAHGVRKFSATISADAGATAH 305 +T + F++ +++ + KA + G N H +R A+ ++ Sbjct: 196 LTNPQDDAVFVSQQGKRLGPRTIQVRLKAAGERELGQNLHPHMLRHSFASHLLESSQDLR 255 Query: 306 ELMATYGWKTVDQAETYTK 324 + G + + YT Sbjct: 256 AVQELLGHADIKTTQIYTH 274 >gi|298571314|gb|ADI87658.1| tyrosine recombinase XerC [uncultured Nitrospirae bacterium MY2-1F] gi|298571415|gb|ADI87756.1| tyrosine recombinase XerC [uncultured Nitrospirae bacterium MY3-11A] Length = 288 Score = 112 bits (280), Expect = 8e-23, Method: Composition-based stats. Identities = 40/265 (15%), Positives = 88/265 (33%), Gaps = 25/265 (9%) Query: 85 GSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRV 142 + + ++ +++ ++ K + + + SS ++ L++++ Sbjct: 5 KNASPHTLRAYKKDLEEFAAFVKKDPASVDLYDIRGFVAAQSKQGLAKSSVMRRLSTVKA 64 Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQFKSFWSEGSQPRLAFEF 198 F + V NP V PK +K+D M++ + ++ + E Sbjct: 65 FFNYLASIGAVTANPTRLVPSPKVPKHLPNFLSKDDTFTMMEKAEGIGFTAARNKAILEL 124 Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-IITVELPDGFMKLLAMTPIGKE---- 253 SGLR S+ A ++ + +K + G V + + L + + Sbjct: 125 FYSSGLRVSELAGADMESINLKQAMVKVRGKGKKERIVPIGSYALGALKTYLVERLLIKE 184 Query: 254 ------------TFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISAD 299 FIN+ +++ A GV + H +R AT Sbjct: 185 DTTRPRISTDPAALFINSSGERLTDRHIRRIVVKFARLTGVEGAVGPHTLRHTFATHLLQ 244 Query: 300 AGATAHELMATYGWKTVDQAETYTK 324 +GA + G ++ + YT Sbjct: 245 SGADLRVIQELLGHASLSTTQKYTH 269 >gi|313501207|gb|ADR62573.1| XerC [Pseudomonas putida BIRD-1] Length = 299 Score = 112 bits (280), Expect = 8e-23, Method: Composition-based stats. Identities = 35/259 (13%), Positives = 86/259 (33%), Gaps = 19/259 (7%) Query: 85 GSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFLT 138 ++ ++ + +++ + G D++ + + +R + +P S + L+ Sbjct: 16 RQVSEHTSQGYRRDLEKVIAYCEEHGIADWQALQIQQLRQLIARLHHHGQSPRSLARLLS 75 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW-TKEDMQQFKSFWS---EGSQPRL 194 ++R L+++ R+ +P + PK + + T +Q + + Sbjct: 76 AVRGLYRYLNREGLCQHDPATGLSAPKGERRLPKVLDTDRALQLLDGGVDDDFIARRDQA 135 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPI--- 250 E SGLR S+ + HL ++ K G + + + L Sbjct: 136 ILELFYSSGLRLSELTNLDLDHLDLAAGLVQVLGKGGKARVLPVGRKAREALQAWYRLRG 195 Query: 251 ----GKETFFINNDKQKMNATQFSIWFKAK-ATKAGVNKSAHGVRKFSATISADAGATAH 305 FI +++ + K + G + H +R A+ ++ Sbjct: 196 IGNPRDRAVFITRQGNRISPRAVRLRVKVAGERELGQHLHPHMLRHSFASHVLESSQDLR 255 Query: 306 ELMATYGWKTVDQAETYTK 324 + G + + YT Sbjct: 256 AVQEMLGHADISTTQIYTH 274 >gi|48477921|ref|YP_023627.1| DNA integration/recombination/invertion protein [Picrophilus torridus DSM 9790] gi|48430569|gb|AAT43434.1| DNA integration/recombination/invertion protein [Picrophilus torridus DSM 9790] Length = 276 Score = 112 bits (280), Expect = 8e-23, Method: Composition-based stats. Identities = 47/250 (18%), Positives = 87/250 (34%), Gaps = 14/250 (5%) Query: 88 AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK-HTPSSAIQFLTSMRVLFKW 146 ++N+ ++S I I I S SM+ + + Sbjct: 17 SLNTIKEYKSLVRDFINYINKKP-EDINDFDIEDYKRHLAVDKRYSKSSQYLSMKAIKLF 75 Query: 147 AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRC 206 ++ ++ P+R + + + S + LLYSG+R Sbjct: 76 LQSRDIKIP---RTLNAPRRNKKIPVYLNTNEAKNLIKASSNNRKHLAIVSLLLYSGIRV 132 Query: 207 SDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLA-----MTPIGKETFFINN 259 S+ C ++ + NI +++ K G +PD ++L +TFFI+N Sbjct: 133 SELCNLKIEDIDLNENIIYVRSGKGGKDRIAIIPDECSEILRSYYNDRLKYPGDTFFISN 192 Query: 260 DKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVD 317 K + + + K A +AG+ K + H +R AT G + G +V Sbjct: 193 KKSRYDTSTIERLIKKLAVRAGIEKHVTPHVLRHTFATSVLRNGGDIRFIQQILGHASVA 252 Query: 318 QAETYTKGAD 327 + YT D Sbjct: 253 TTQIYTHIDD 262 >gi|330878502|gb|EGH12651.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 290 Score = 112 bits (280), Expect = 8e-23, Method: Composition-based stats. Identities = 36/259 (13%), Positives = 92/259 (35%), Gaps = 19/259 (7%) Query: 85 GSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIR---SGVESRKHTPSSAIQFLT 138 ++ ++ ++ ++ +K+ + + +H+R + + + S + L+ Sbjct: 7 RQVSPHTLEAYRRDLSKVLTFCQKAQLSSWNDLDIQHLRSFTARQHQQGQSSRSLARMLS 66 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRL 194 ++R +K+ R+ +P + PK + + + Q E + + Sbjct: 67 AVRGFYKYLNREGLCQHDPANGLSPPKGERRLPKTLDTDRTAQLLDGGVEDDFLAHRDQA 126 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV--------ELPDGFMKLLA 246 E L SGLR S+ + L ++ G+ V + + ++ L A Sbjct: 127 IMELLYSSGLRLSELTGLNLDQLDLRDGLVQVLGKGSKTRVLPVGSKARQALETWLPLRA 186 Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAK-ATKAGVNKSAHGVRKFSATISADAGATAH 305 +T + F++ +++ + K + G N H +R A+ ++ Sbjct: 187 LTNPQDDAVFVSQQGKRLGPRAVQLRIKTAGERELGQNLHPHMLRHSFASHLLESSQDLR 246 Query: 306 ELMATYGWKTVDQAETYTK 324 + G + + YT Sbjct: 247 AVQELLGHADIKTTQIYTH 265 >gi|146305305|ref|YP_001185770.1| site-specific tyrosine recombinase XerC [Pseudomonas mendocina ymp] gi|145573506|gb|ABP83038.1| tyrosine recombinase XerC subunit [Pseudomonas mendocina ymp] Length = 315 Score = 112 bits (280), Expect = 8e-23, Method: Composition-based stats. Identities = 38/275 (13%), Positives = 95/275 (34%), Gaps = 20/275 (7%) Query: 70 TLKWLISEYRKS-AHWGSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIR---SG 122 T + + Y + ++V++ + ++ G D+ + T+ +R + Sbjct: 17 TFEAHLDAYLEHLRRERQVSVHTLDGYRRDLGKLLAFCEAEGLSDWAALDTRSLRRLIAR 76 Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 + ++ S + L++ R L+++ +R+ +P + PKR+ R + Q Sbjct: 77 LHAQGLASRSLARLLSATRGLYQYLLREGLCRHDPAAGLSPPKRERRLPRTLDADRSAQL 136 Query: 183 KSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT-VEL 237 E + + E SGLR S+ V L ++ + G + + Sbjct: 137 LDGAVEDDFIARRDQAMLELFYSSGLRLSELVGLDVDGLDLPAGLVRVRGKGNKTRELPV 196 Query: 238 -------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAK-ATKAGVNKSAHGV 289 + ++ L + FI+ +++ + + + G + H + Sbjct: 197 GSMARQALEQWLPLRKLAGPSDGAVFISQQGRRLGPRAVQLRVRQAGVRELGQHLHPHML 256 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 R A+ ++ + G + + YT Sbjct: 257 RHSFASHMLESSQDLRAVQELLGHADIATTQIYTH 291 >gi|307322976|ref|ZP_07602243.1| integrase family protein [Sinorhizobium meliloti AK83] gi|306891378|gb|EFN22297.1| integrase family protein [Sinorhizobium meliloti AK83] Length = 292 Score = 112 bits (280), Expect = 8e-23, Method: Composition-based stats. Identities = 40/269 (14%), Positives = 88/269 (32%), Gaps = 26/269 (9%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHT 129 L + + ++N++ S+ R G + + IR+ +K Sbjct: 4 LRQRMSEDMQVRNFSLNTQHSYLQQVSLFARHFGKSP-DLLGREDIRTYQVYLANEKKLA 62 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 P+S ++++R F + +++V V P++ + + +++QQF Sbjct: 63 PNSIHIAISALRFFFSVTLERDWVP----EEVLLPRKPQKLPIILSPDEVQQFLG-CVLD 117 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLLA- 246 + +GLR S++ + + ++ K V L +++L Sbjct: 118 LKHHAILTTCYAAGLRISEAVHLKTTDIDSQRMVVRVEQGKGQKDRYVMLSPKLLEILRD 177 Query: 247 --MTPIGKETFFINND-KQKMNATQFSIWFKAKATKA------GVNKSAHGVRKFSATIS 297 KE F + + KA + H +R A Sbjct: 178 YWRMRRPKEWLFPGDRTGHPITRDAVG----QACAKAHDLSRLSKPVTPHSLRHAFAVHL 233 Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGA 326 +AGA + G +++ Y + A Sbjct: 234 LEAGADVRTIQLLLGHRSLATTAHYLRIA 262 >gi|251780259|ref|ZP_04823179.1| site-specific recombinase, phage integrase family [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243084574|gb|EES50464.1| site-specific recombinase, phage integrase family [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 329 Score = 112 bits (280), Expect = 8e-23, Method: Composition-based stats. Identities = 48/281 (17%), Positives = 100/281 (35%), Gaps = 29/281 (10%) Query: 75 ISEYRKSA----HWGSLAVNSRISFESYFDQI-IRKSGDFDYRKITTKHIRSGVE----S 125 I+ Y+K + L + F+ I I D + I + + + + Sbjct: 35 IAAYKKDLTIFFRFMKLYRGIVKDKKIEFEDIDITDINDEFLKSIKLRDLYAFMSFIEKY 94 Query: 126 RKHTPSSAIQFLTSMRVLFKWAV-RQEYVAINPCLSVERPKRKTEGIRPWTKED----MQ 180 R ++ + + + +++ FK+ + + + NP +E PK T + + Sbjct: 95 RNNSAYARARKVATLKSYFKFLQGKAKIIVDNPTTELESPKINKRQPVYLTLDQSIHLLS 154 Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240 ++ L G+R S+ C ++ ++N+I I K TV L + Sbjct: 155 SLDKNNKNYARDYCILTLFLNCGMRLSELCGISIEKIRNDILVII-GKGNKERTVYLNEA 213 Query: 241 FMKLL----------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAH 287 +K + P K+ F+++ + +N I K AG+ + H Sbjct: 214 CLKSIENYMRIRDDSKALPEYKKFLFLSSHNKPINQRTVEIMIKKHIKNAGLTDGKYTPH 273 Query: 288 GVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGAD 327 +R +AT+ G L G + + + YT + Sbjct: 274 KLRHTAATLMYKYGDVDIRSLQNILGHENISTTQIYTHVDN 314 >gi|239948071|ref|ZP_04699824.1| integrase [Rickettsia endosymbiont of Ixodes scapularis] gi|239922347|gb|EER22371.1| integrase [Rickettsia endosymbiont of Ixodes scapularis] Length = 233 Score = 112 bits (280), Expect = 8e-23, Method: Composition-based stats. Identities = 35/201 (17%), Positives = 80/201 (39%), Gaps = 8/201 (3%) Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE--GS 190 A +FL + +F A+ + +NP + +++ + ++ R T+E++ QF + +E Sbjct: 13 ANRFLEILSPVFSKAIEWGLIKVNPVIGIKKHQEQSR-DRYLTREEIPQFFTAIAEEKNQ 71 Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMT 248 + F LY+ + + + + + + K G + L D +++L Sbjct: 72 VMKDFFLIALYTSVHKDNLLTMKWEQVSFTDKQLYLPETKNGDPHHLPLLDQAVEILKAR 131 Query: 249 PIGKET--FFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAH 305 + F + + + + +K+ KAG+ N H +R+ + A GA + Sbjct: 132 KEQSTSTWVFPSETSRSGHLQEPKKAWKSICKKAGIENLRIHDLRRTIPSWMAMTGANQY 191 Query: 306 ELMATYGWKTVDQAETYTKGA 326 + + YT+ A Sbjct: 192 VIGQLLNHRDPRSTAIYTRLA 212 >gi|294101938|ref|YP_003553796.1| integrase family protein [Aminobacterium colombiense DSM 12261] gi|293616918|gb|ADE57072.1| integrase family protein [Aminobacterium colombiense DSM 12261] Length = 311 Score = 112 bits (280), Expect = 8e-23, Method: Composition-based stats. Identities = 47/297 (15%), Positives = 102/297 (34%), Gaps = 19/297 (6%) Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125 K T + ++ Y + LA + + + + + K S Sbjct: 10 KTEETWQQVVERYVLTRKADGLAPRTVKDYRYHLTRFFTAYPEG-LNPDKAKRCVLEYMS 68 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + +P L +R F+W V + + NPC + K + + + + + ++ + Sbjct: 69 LERSPGYHNMVLKYLRCFFRWTVNEGILYSNPCSGIRSRKAQPKIAQH-SPDVVKALLAL 127 Query: 186 WSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIK--TQKTGTIITVEL 237 + G + L +G+R ++ V+ + + ++ T KT T+ + Sbjct: 128 PDQSTYTGLRSYALLLLSLDTGIRPREALSLRVEDVSIPARVVVVRAETAKTRVQRTLPI 187 Query: 238 PD----GFMKLLAMTPIG--KETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRK 291 D MKL+++ P F + D Q + + K K G + + + +R Sbjct: 188 SDQTAQAIMKLVSIRPKEWRNAPLFCSRDGQPLRVNSWYHTVKGYGEKIGADITPYSLRH 247 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348 A L G +D + Y A ++ ++S V++ P Sbjct: 248 LFALYFLRNNGNTFALQRIMGHDNLDTTKIYVALAQS---DLEEQHELASPVNALFP 301 >gi|25028473|ref|NP_738527.1| site-specific tyrosine recombinase XerC [Corynebacterium efficiens YS-314] gi|34222795|sp|Q7ZAK0|XERC_COREF RecName: Full=Tyrosine recombinase xerC gi|23493758|dbj|BAC18727.1| putative phage integrase/recombinase XerC [Corynebacterium efficiens YS-314] Length = 310 Score = 112 bits (280), Expect = 8e-23, Method: Composition-based stats. Identities = 37/265 (13%), Positives = 92/265 (34%), Gaps = 19/265 (7%) Query: 86 SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFLTSMRV 142 + + + S + D + T ++R+ + + ++ + S++ Sbjct: 40 GRSDATVRGYRSDLRHMAATIPD--LTEFTLPNLRAWLGRAVEEGKSRATLARRTASVKS 97 Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS-----QPRLAFE 197 WAV+ ++ + + PK R + +F + + + E Sbjct: 98 FSTWAVKNGLISGDEAARLVSPKVTRNLPRVLGEVQAGEFMGSAAADTEDEFRRDSAILE 157 Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVEL-------PDGFMKLLAMTP 249 L +G+R S+ C + + ++ ++ K + + +++ Sbjct: 158 LLYATGMRVSELCGLDLGDVDHHRRMVRVLGKGDKERMIPFGKAAADALEQWLEARDRMA 217 Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELM 308 ++ F+ +++A Q A AG + S H +R +AT D GA ++ Sbjct: 218 KVEDAMFVGVRGGRIDARQIRRIVDRTAQVAGADHLSPHSLRHTAATHLLDGGADLRQVQ 277 Query: 309 ATYGWKTVDQAETYTKGADRIRLGI 333 G ++ + YT + + L Sbjct: 278 EMLGHSSLQTTQIYTHVSSQRLLEA 302 >gi|149199225|ref|ZP_01876263.1| tyrosine recombinase [Lentisphaera araneosa HTCC2155] gi|149137650|gb|EDM26065.1| tyrosine recombinase [Lentisphaera araneosa HTCC2155] Length = 292 Score = 112 bits (280), Expect = 9e-23, Method: Composition-based stats. Identities = 40/276 (14%), Positives = 100/276 (36%), Gaps = 24/276 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSG---DFDYRKITTKHIRSGVESRKHTP---SSAIQFLT 138 L+ N+ ++ + + + +Y I + + E K+ S+ + L Sbjct: 13 RGLSQNTIDAYINDLNDFTAYQEQKLNKEYPSINKDDLLNYCEDCKNRELNDSTISRRLV 72 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG----SQPRL 194 ++++ F++ +++ V + +E + + ++++ + E + + Sbjct: 73 TLKIFFRFLYQEKIVPKDVGEHLESARLSRLLPDYLSLPEIERLLHIYDEAIPLQFRNKF 132 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-IITVE-------LPDGFMKLLA 246 E L GLR S+ C ++ + G+ +V + ++K + Sbjct: 133 IIELLYSCGLRISELCGLRTDSFNYESGFLRVKGKGSKERSVPFGTQVASMSRQYIKNIR 192 Query: 247 MTPIGKET---FFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAG 301 K ++N+ + + ++ + K A KA +NK H +R A+ Sbjct: 193 PQLCKKNNPPELIVSNNGRPLTRSRVWQFLKEAAIKAEINKNLHPHVLRHSFASHLLSNN 252 Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 A + G + E YT ++ RL + + Sbjct: 253 ADLRIIQELLGHADIATTEIYTH-VEKTRLQNIHQK 287 >gi|88608752|ref|YP_506043.1| tyrosine recombinase XerD [Neorickettsia sennetsu str. Miyayama] gi|88600921|gb|ABD46389.1| tyrosine recombinase XerD [Neorickettsia sennetsu str. Miyayama] Length = 305 Score = 112 bits (280), Expect = 9e-23, Method: Composition-based stats. Identities = 45/265 (16%), Positives = 87/265 (32%), Gaps = 20/265 (7%) Query: 85 GSLAVNSRISFE---SYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMR 141 + +N+ S+ ++K G D K + + +++ + ++ + + + R Sbjct: 20 RNATLNTISSYRTDLRLLSTFLKKRGLKDASKENLYEYIANLRAQQLSNATIRRKIATFR 79 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP----RLAFE 197 F + ++ + NP S+E PK+ R TKE++ +F G E Sbjct: 80 QFFSFLYSEKISSTNPAQSLELPKKTLVLPRYLTKEEVFSLLTFLEAGQPATLRLYAILE 139 Query: 198 FLLYSGLRCSDSCRAGVQHLQ----NNIFSIKTQKTGTIITVELPDG----FMKLLAMTP 249 L SG+R S+ V ++ I K + L Sbjct: 140 ILYSSGMRVSELINMKVSDIRPLLNGQQHIIIVGKGRKERILPFSKKAIQVLKLYLTSYQ 199 Query: 250 IGKETFFINNDK--QKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATA 304 F + + M+ + K A K ++ S H +R AT D G Sbjct: 200 SNSPWLFPGAGRKDRPMSRQRLGQLLKELALKCKIDPKRISPHVIRHSFATHLLDNGMDI 259 Query: 305 HELMATYGWKTVDQAETYTKGADRI 329 + G + + YT + Sbjct: 260 KVVQDLLGHAQITTTQIYTHISQHK 284 >gi|254452498|ref|ZP_05065935.1| phage integrase [Octadecabacter antarcticus 238] gi|198266904|gb|EDY91174.1| phage integrase [Octadecabacter antarcticus 238] Length = 319 Score = 112 bits (280), Expect = 9e-23, Method: Composition-based stats. Identities = 47/260 (18%), Positives = 91/260 (35%), Gaps = 23/260 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFD--YRKITTKHIRSGVESRKHTPSSAIQFLTSMRV 142 +L S+ S + G K+ + + + + Q +T ++ Sbjct: 39 RNLGPASKSSHLRACKRFAAWLGRSPETATPDDVKYFQQYLVESGVSICTRNQTMTGVKF 98 Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS 202 LF+ +R+ + + K + +K+++++F + + R+ Sbjct: 99 LFRVTLRR----HDLVAEIFHLKEPVKIPLVLSKKEIKRFLAMAPS-LKARVMLSLAYGC 153 Query: 203 GLRCSDSCRAGVQHLQNN--IFSIKTQKTGTIITVELPDGFMKLLAMT------------ 248 GLR + R V + ++ I I K V LP + LL Sbjct: 154 GLRAGEVVRLKVGDIDSDQEIIRIVQSKGRKDRNVMLPVDILSLLRDWWKERPTSQDRDV 213 Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHE 306 P+ + F + ++A Q S FK A +AG+ K + H +R AT ++G Sbjct: 214 PVSERVLFPGYCGKYLSARQISRLFKETAQEAGITKPVTLHTLRHSFATHLLESGVDIRV 273 Query: 307 LMATYGWKTVDQAETYTKGA 326 + A G + Y A Sbjct: 274 IQALLGHAKLTTTALYASVA 293 >gi|158520653|ref|YP_001528523.1| integrase family protein [Desulfococcus oleovorans Hxd3] gi|158509479|gb|ABW66446.1| integrase family protein [Desulfococcus oleovorans Hxd3] Length = 397 Score = 112 bits (280), Expect = 9e-23, Method: Composition-based stats. Identities = 54/275 (19%), Positives = 99/275 (36%), Gaps = 20/275 (7%) Query: 92 RISFESYFD---QIIRKSGDFDYRKITTKHIRSGVE------SRKHTPSSA---IQFLTS 139 + +E + + K G IT I + S++ P +A + Sbjct: 116 KSWYEDAINYQTHLAPKLGQKRLDAITQLDIERLLSGLRKGTSKRGKPYAAATIKHQIVL 175 Query: 140 MRVLFKWAVRQE-YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA--F 196 + +F A R Y NPC + +P+ + T +++ + + A Sbjct: 176 LTRMFNVAARWGKYTGPNPCKLIAKPRLNNQKTGFLTDDELTRLLDVLEQWPDRMSAGFI 235 Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ--KTGTIITVELPDGFMKLLAMTPIGKET 254 FLL++GLR + R Q + + ++ + K G + L + + L P ET Sbjct: 236 AFLLHTGLRRGELFRLTWQDVNMDRQTLTVRDPKGGRDTVLPLSEKAIDALNSLPREHET 295 Query: 255 FFINNDKQKMNATQFSI-WFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYG 312 F+ + F W++ K A H +R A+ AG + + A Sbjct: 296 PFVFYGRNGAQRADFRHPWYRIKQAAALPEGFRLHDLRHHFASALVSAGTNLYTVQALLT 355 Query: 313 WKTVDQAETYTKGADRI-RLGIKNSRRISSVVDSD 346 K+ + Y +D+ R +K S +S SD Sbjct: 356 HKSAAMTQRYAHLSDQALRDAVKLSDDLSKKATSD 390 >gi|118578727|ref|YP_899977.1| tyrosine recombinase XerC [Pelobacter propionicus DSM 2379] gi|166918893|sp|A1AKP9|XERC_PELPD RecName: Full=Tyrosine recombinase xerC gi|118501437|gb|ABK97919.1| tyrosine recombinase XerC [Pelobacter propionicus DSM 2379] Length = 302 Score = 112 bits (280), Expect = 9e-23, Method: Composition-based stats. Identities = 47/272 (17%), Positives = 96/272 (35%), Gaps = 23/272 (8%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQ----IIRKSGDF----DYRKITTKHIRSGVES 125 I +R +L+ ++ +++ Q + + GD D + + + + + Sbjct: 8 IRAFRLHLETERNLSPHTLAAYDRDLRQFAAFVAAEMGDSATAEDVDHLLLRRYLAQLGT 67 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + SS + L ++R ++ +R V+ NP + PKR+ + Sbjct: 68 QIRK-SSQGRKLAAIRSFYRHLLRLGSVSRNPAELIATPKREQRLPFHLDIDQATALMET 126 Query: 186 WSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG 240 +E G + R E L SGLR S+ ++ + ++ K G V L Sbjct: 127 PTEEENYGLRDRAILETLYSSGLRVSELTGLAIRDINLAGGMLRVMGKGGKERIVPLGSR 186 Query: 241 FMKLL------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATK-AGVNK-SAHGVRKF 292 ++ + F+N+ ++N + A + A S H +R Sbjct: 187 AVRAIQEYLDSRGGGTATAPLFLNSRGDRINRRSVARIVDAHVHEIAAFKHISPHTLRHT 246 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTK 324 AT + GA + G ++ + YT Sbjct: 247 FATHMLEGGADLRAIQELLGHASLSTTQKYTH 278 >gi|293400410|ref|ZP_06644556.1| recombinase [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291306810|gb|EFE48053.1| recombinase [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 375 Score = 112 bits (280), Expect = 9e-23, Method: Composition-based stats. Identities = 50/344 (14%), Positives = 132/344 (38%), Gaps = 22/344 (6%) Query: 6 RLPPFVTKERT--RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS 63 R P+V RH G+ ++ ++ +E+ + + S + + Sbjct: 42 RRKPWVACVTISLRHSND-----AGYKQKRKIIGYYETQEMAEF-SLWNYNKNPVLFEEI 95 Query: 64 PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123 + T + + E+ S + ++ N+ +++ + + ++ T H + + Sbjct: 96 QKLGTITFETIYQEW-SSMKFRCISQNAINGYKAAYAK-CEPIWHCKLSELKTIHFQRIM 153 Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCL--SVERPKRKTEGIRPWTKEDMQQ 181 + + + +S ++ + M ++ ++AV+ + + N ++ + +R E +P+++++++ Sbjct: 154 DESELSVASDLKLKSLMVLVCEYAVQNDIINKNYAKYVTINKKERPPEIHKPFSEKEIEV 213 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT---GTIITVELP 238 + + ++Y+G R S+ + + + +I+ G V + Sbjct: 214 LFAHDNIPFVD--TILIMIYTGFRVSELFQIKTKDVDLQNLTIRGGNKTEAGKNRVVPIH 271 Query: 239 DGFMKL-LAMTPIGKETFFIN-NDKQKMNATQFSI-WFKAKATKAGVNKSAHGVRKFSAT 295 + L +G E + K+N + +F +N H R AT Sbjct: 272 ERIQDYVLNYYNMGNEYLICDLETGAKINYHAYRNNYFDKIMNMLDMNHLPHDCRHTFAT 331 Query: 296 ISADAGATAHELMATYGWKTVDQAE-TYT-KGADRIRLGIKNSR 337 ++ GA A + G + E YT K ++R I + + Sbjct: 332 RLSNFGANATSIKRLIGHTSYATTEKIYTHKDIGQLRRAIFSLK 375 >gi|304316783|ref|YP_003851928.1| integrase [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778285|gb|ADL68844.1| integrase family protein [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 288 Score = 112 bits (280), Expect = 9e-23, Method: Composition-based stats. Identities = 38/262 (14%), Positives = 99/262 (37%), Gaps = 20/262 (7%) Query: 77 EYRKSAHWGSLAVNSRISFESYFDQIIR-----KSGDFDYRKITTKHIRSGVESRKHTPS 131 +Y K+ L+ N+ S++ Q + G F+ +K T + + ++ + + + Sbjct: 10 DYLKND--KKLSDNTVDSYKRDIIQFLEYLEKINIGCFEVKKATIINYMNLLKHKNRSQA 67 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----S 187 + + L+S++ +++ + P +++ PK + + + + + + S+ Sbjct: 68 TISRHLSSIKSFYQYLFMNRLIDEEPAYTLDAPKIERKVPVTLSIDQVDKLLSYEFEKSE 127 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL-- 245 +G + + E L +GL+ S+ + + N I K+ + + + + L Sbjct: 128 KGLRDKAIIEVLYATGLKVSELISLRIDDVNLNYGYIYC-KSAKERFIPIGESAVDALQN 186 Query: 246 ----AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA--GVNKSAHGVRKFSATISAD 299 + F+N + + K G + + +R+ A + Sbjct: 187 YMSVRKNIKNNDHLFLNMRGEALTRQGCWKIIKEYTDIVNPGFDITPSILRRSFAKHLLE 246 Query: 300 AGATAHELMATYGWKTVDQAET 321 GA + G+K+V+ E Sbjct: 247 NGADIRSVQEMLGYKSVNSNEL 268 >gi|167568329|ref|ZP_02361203.1| site-specific tyrosine recombinase XerC [Burkholderia oklahomensis C6786] Length = 306 Score = 112 bits (280), Expect = 9e-23, Method: Composition-based stats. Identities = 44/283 (15%), Positives = 92/283 (32%), Gaps = 32/283 (11%) Query: 72 KWLISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---K 127 LI++Y + H L+ ++ ++ D++ + + +T +R V Sbjct: 3 ADLIADYLSNLRHVRKLSDHTLRAYAHELDELKKLANGRPLESLTAVDVRGAVARAHAGG 62 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + S L++ R ++W + + NP ++ PKR + + +D + Sbjct: 63 LSARSISHRLSAWRAFYRWFAQHVEMNANPVATIRAPKRAKMLPKALSVDDAAALMDAPA 122 Query: 188 EGS----QPRLAFEFLLYSGLRCSDSCRA-------------GVQHLQNNIFSIKTQKTG 230 G+ + E SGLR ++ G L +++ K Sbjct: 123 SGTAESLRDHAILELFYSSGLRLAELIGLDVAYVKIGEYRSEGWLDLAEAEVTVR-GKGD 181 Query: 231 TIITVELPDGFMKLLAMTPIGKETF--------FINNDKQKMNATQFSIWFKAKATKAGV 282 V + + L + F F++ +M+ K A AG+ Sbjct: 182 KERKVPVGRKAIDALNAWLAVRGEFVRHDPHPLFLSVRGNRMSPGVVRGRVKRAALAAGI 241 Query: 283 NK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 H +R AT + + G ++ + YT Sbjct: 242 PANVHPHVLRHSFATHVLQSSGDLRAVQELLGHASISATQVYT 284 >gi|218699138|ref|YP_002406767.1| phage integrase [Escherichia coli IAI39] gi|218369124|emb|CAR16878.1| phage integrase [Escherichia coli IAI39] Length = 256 Score = 112 bits (280), Expect = 9e-23, Method: Composition-based stats. Identities = 46/251 (18%), Positives = 88/251 (35%), Gaps = 19/251 (7%) Query: 96 ESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH--TPSSAIQFLTSMRVLFKWAVRQEYV 153 S I R D ITTK I + + +SA +++ F+ A+ + ++ Sbjct: 1 MSKIKAIRRGLTDAPLEDITTKEIAAMLNGYIDEGKAASAKLIRSTLSDAFREAIAEGHI 60 Query: 154 AINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAG 213 NP + K + R E ++ +++ S RLA E + +G R D C Sbjct: 61 TTNPVAATRAAKSEVRRSRLTADEYLKIYQAAESSPCWLRLAMELAVVTGQRVGDLCEMK 120 Query: 214 VQHLQNNIFSIKTQKTGTIITVE---------LPDGFMKLLAMTPIGKETFFINNDKQKM 264 + + ++ KTG I + + +G ET + ++ + Sbjct: 121 WSDIVDGYLYVEQSKTGVKIAIPTALHVDALGISMKETLDKCKEILGGETIIASTRREPL 180 Query: 265 NATQFSIWFKAKATKAGV-----NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319 ++ S +F +G+ + H +R + + + G K+ A Sbjct: 181 SSGTVSRYFMRARKASGLSFEGDPPTFHELR-SLSARLYEKQISDKFAQHLLGHKSDTMA 239 Query: 320 ETYTKGADRIR 330 Y DR R Sbjct: 240 SQY--RDDRGR 248 >gi|256854437|ref|ZP_05559801.1| predicted protein [Enterococcus faecalis T8] gi|256709997|gb|EEU25041.1| predicted protein [Enterococcus faecalis T8] gi|315029064|gb|EFT40996.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX4000] Length = 302 Score = 112 bits (280), Expect = 9e-23, Method: Composition-based stats. Identities = 44/284 (15%), Positives = 101/284 (35%), Gaps = 24/284 (8%) Query: 50 ALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR--KSG 107 +P + + +I E+ + + +++S KS Sbjct: 2 CWFARSPFLSKFDKKGLFFMNWEDIILEFCMDITVRGFSKITIKNYKSKLRNTANFFKSI 61 Query: 108 DFDYRKITTKHIRSGVESRKHT---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP 164 + + +I K I+S + + S+ ++ ++ LF + + ++Y+ NP + +ER Sbjct: 62 NVEPSQIEKKQIKSWIIDMQEKEMQASTINVSVSRLKKLFDYMLIEKYIDYNPFVDIERL 121 Query: 165 KRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA------FEFLLYSGLRCSDSCRAGVQHLQ 218 K + + I P +++Q + + +A ++ GLR S+ C + + Sbjct: 122 KEQRKVIYPLNDYEIKQMLTVAKKHPYKHIAQRNVVILMLMIECGLRISEVCEIRDEDIM 181 Query: 219 NNIFSIKTQKTGTIITVELPDGFMKLLAMTPI---------GKETFFINNDKQKMNATQF 269 NN I+ K V + K + F ++N +K+N Sbjct: 182 NNQIIIRKSKNNKDRAVAVSPILKKEIIKYQRIKKRKFGLLEGNPFIVSNLGKKLNEKSI 241 Query: 270 SIWFKAKATKAGV-NK---SAHGVRKFSATISADAGATAHELMA 309 + + + + S H +R A++ G + L + Sbjct: 242 WQIMQEIKKQIDIRDCVRFSGHTLRHTYASMQLRNGLDIYTLSS 285 >gi|229546531|ref|ZP_04435256.1| integrase/recombinase [Enterococcus faecalis TX1322] gi|307277324|ref|ZP_07558423.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX2134] gi|307296545|ref|ZP_07576367.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX0411] gi|229308343|gb|EEN74330.1| integrase/recombinase [Enterococcus faecalis TX1322] gi|306496018|gb|EFM65604.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX0411] gi|306505991|gb|EFM75162.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX2134] gi|315157760|gb|EFU01777.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX0312] Length = 302 Score = 112 bits (280), Expect = 9e-23, Method: Composition-based stats. Identities = 44/284 (15%), Positives = 101/284 (35%), Gaps = 24/284 (8%) Query: 50 ALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR--KSG 107 +P + + +I E+ + + +++S KS Sbjct: 2 CWFARSPFLSKFDKKGLFFMNWEDIILEFCMDITVRGFSKITIKNYKSKLRNTANFFKSI 61 Query: 108 DFDYRKITTKHIRSGVESRKHT---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP 164 + + +I K I+S + + S+ ++ ++ LF + + ++Y+ NP + +ER Sbjct: 62 NVEPSQIEKKQIKSWIIDMQEKEMQASTINVSVSRLKKLFDYMLIEKYIDYNPFVDIERL 121 Query: 165 KRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA------FEFLLYSGLRCSDSCRAGVQHLQ 218 K + + I P +++Q + + +A ++ GLR S+ C + + Sbjct: 122 KEQRKVIYPLNDYEIKQMLTVAKKHPYKHIAQRNVVILMLMIECGLRISEVCEIRDEDIM 181 Query: 219 NNIFSIKTQKTGTIITVELPDGFMKLLAMTPI---------GKETFFINNDKQKMNATQF 269 NN I+ K V + K + F ++N +K+N Sbjct: 182 NNQIIIRKSKNNKDRAVAVSPILKKEIIKYQRIKKRKFGLLEGNPFIVSNLGKKLNEKSI 241 Query: 270 SIWFKAKATKAGV-NK---SAHGVRKFSATISADAGATAHELMA 309 + + + + S H +R A++ G + L + Sbjct: 242 WQIMQEIKKQIDIRDCVRFSGHTLRHTYASMQLRNGLDIYTLSS 285 >gi|146296464|ref|YP_001180235.1| phage integrase family protein [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145410040|gb|ABP67044.1| phage integrase family protein [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 286 Score = 112 bits (280), Expect = 9e-23, Method: Composition-based stats. Identities = 45/269 (16%), Positives = 97/269 (36%), Gaps = 23/269 (8%) Query: 76 SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF--------DYRKITTKHIRSGVESRK 127 EY K+ + N+ S+ + +R D + + +S + + Sbjct: 6 EEYLKTQDFT---ENTIKSYTKDVELFMRWYIDTTGQEFLPENLTEFDLVEYKSYLLRQN 62 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE--GIRPWTKEDMQQFK-S 184 PS+ + + S+R + + + + + +++ K T K+D+ +F+ + Sbjct: 63 LRPSTVNRSIISLRKFVHFLLDRGLLKKDISTRLKQVKDTTRNLSPVVLDKKDIYKFRRT 122 Query: 185 FWSEGSQPRLAF-EFLLYSGLRCSDSCRAGVQHLQ--NNIFSIK-TQKTGTIITVELPDG 240 G +AF E LL +G+R S++ ++ ++ +K K + V L Sbjct: 123 VHQFGKARDIAFVELLLNTGMRISEAINLKLEDIEISERKGKVKIWGKGRSYREVPLNSD 182 Query: 241 ----FMKLLAMTP-IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSAT 295 + L P F+ + + + A A V+ H +R F A Sbjct: 183 ARKYLSEYLKKRPYSETNYLFVTSTGKPLTRNTAYKIILKYAKLASVDLHPHMLRHFFAQ 242 Query: 296 ISADAGATAHELMATYGWKTVDQAETYTK 324 D G +++ G + ++ Y K Sbjct: 243 TLIDKGLNLYDVQQLLGHQRIETTLRYKK 271 >gi|253988429|ref|YP_003039785.1| integrase/recombinase [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253988435|ref|YP_003039791.1| integrase/recombinase [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253990473|ref|YP_003041829.1| integrase [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|211638960|emb|CAR67575.1| probable integrase/recombinase [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253779879|emb|CAQ83040.1| putative integrase/recombinase [Photorhabdus asymbiotica] gi|253779885|emb|CAQ83046.1| putative integrase/recombinase [Photorhabdus asymbiotica] gi|253781923|emb|CAQ85087.1| putative integrase [Photorhabdus asymbiotica] Length = 472 Score = 112 bits (280), Expect = 1e-22, Method: Composition-based stats. Identities = 45/290 (15%), Positives = 103/290 (35%), Gaps = 33/290 (11%) Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYF---DQIIRKSGDFDYRK----ITTKHIRS 121 TL+ ++ + ++ L+ ++ S+E G + + + R Sbjct: 144 ATLRQHLAAWLEAVRGQGLSERTQESYEERLLPFISWCEARGVMTAPQVSLPLLESYQRW 203 Query: 122 GVESRKH-----TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI-RPWT 175 SRK +P S L+ +R F+W +++ ++ NP ++ P+ + + Sbjct: 204 LRSSRKANGQPYSPGSQRDRLSVLRQWFRWLLQRHHILYNPTDNMVLPREEKRLPAQVMN 263 Query: 176 KED----MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKT 229 +++ + G + R E L +G+R + + + + ++ K Sbjct: 264 EDETHTVLAATDINTPTGLRNRAILEVLWSTGIRRMEVANLLLSEVDFGRGVVLVRQGKG 323 Query: 230 GTIITVELPD----GFMKLLAMTP-----IGKETFFINNDKQKMNATQFSIW----FKAK 276 G V + + + L++ P FI + + + + + Sbjct: 324 GKDRVVPIGEQALHWLSRWLSVRPELTRRGDSGHLFITKKGRGLARGTLTQIAADSIRKQ 383 Query: 277 ATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 A A + H R AT + GA + A G + ++ + YT+ A Sbjct: 384 AQLAK-PGACHLFRHSMATQMLENGADTRHIQAILGHEKLETTQIYTRVA 432 >gi|254455124|ref|ZP_05068559.1| phage integrase [Octadecabacter antarcticus 238] gi|198263534|gb|EDY87806.1| phage integrase [Octadecabacter antarcticus 238] Length = 320 Score = 112 bits (280), Expect = 1e-22, Method: Composition-based stats. Identities = 44/260 (16%), Positives = 83/260 (31%), Gaps = 23/260 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFD--YRKITTKHIRSGVESRKHTPSSAIQFLTSMRV 142 +L S+ S + G K+ + + + + Q +T + Sbjct: 39 RNLGPASQSSHLRACKRFAAWLGRSPETATPDDVKYFQQYLIESGVSICTRNQTMTGV-- 96 Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS 202 K+ +R + + K + +K+++++ + + R+ Sbjct: 97 --KFLLRVTLRRHDLVAEIFHLKEPVKVPLVLSKKEIKRILAMAPS-LKARVMLSLAYGC 153 Query: 203 GLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMT------------ 248 G+R + R V + I I K V LP + LL Sbjct: 154 GMRAGEVVRLKVGDIDSDQGIIRIVQSKGRKDRIVMLPVDILSLLRDWWKERPTGQDKDV 213 Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHE 306 P + F + ++A Q S FK A +AG+ K + H +R AT + G Sbjct: 214 PAPERVLFPGYRGKHLSARQISRLFKETAREAGITKPVTLHTLRHSFATHLLERGVDIRV 273 Query: 307 LMATYGWKTVDQAETYTKGA 326 + A G + Y A Sbjct: 274 IQALLGHSKLTTTARYASVA 293 >gi|118592100|ref|ZP_01549494.1| probable site-specific integrase/recombinase [Stappia aggregata IAM 12614] gi|118435396|gb|EAV42043.1| probable site-specific integrase/recombinase [Stappia aggregata IAM 12614] Length = 307 Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats. Identities = 42/276 (15%), Positives = 85/276 (30%), Gaps = 31/276 (11%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV---ESRKHTPSSAIQFLTSMR 141 A N+ + + G ++ I + + R +S + L++++ Sbjct: 18 RGAAENTLAGYRRDLEDFSGFLGRKSLASAQSEDISAYLGDLNRRGFAETSQARRLSALK 77 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----------- 190 +K+ + +P ++ PK++ + + ED+ + + Sbjct: 78 QFYKFLYAEGTREDDPTRTLSAPKKRASLPKVLSIEDVDRLIETARAETERPRKSATARL 137 Query: 191 ---QPRLAFEFLLYSGLRCSDSCRAGV-QHLQNNIFSIKTQKTGTIITVELPDGFMKLL- 245 + E L +GLR S+ V L++ K G V L + Sbjct: 138 RAQRMYTLIEVLYATGLRVSELVALPVTAALRDARLIEIKGKGGKERLVPLSRAAQAAMK 197 Query: 246 -------AMTPIGKETFFINNDK--QKMNATQFSIWFKAKATKAGVNK---SAHGVRKFS 293 A K + + + F+ K A AG++ S H +R Sbjct: 198 DYVGLRAAEGAYEKSPWLFPSHGDSGHLTRQHFARELKDLAVAAGLDAGKISPHVLRHAF 257 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 A+ GA + G + + YT D Sbjct: 258 ASHLLQNGADLRVVQQLLGHADISTTQIYTHVLDER 293 >gi|254520658|ref|ZP_05132714.1| phage integrase [Clostridium sp. 7_2_43FAA] gi|226914407|gb|EEH99608.1| phage integrase [Clostridium sp. 7_2_43FAA] Length = 400 Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats. Identities = 52/310 (16%), Positives = 106/310 (34%), Gaps = 49/310 (15%) Query: 63 SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD-----FDYRKITTK 117 S + TT++ I + + ++ + + I + D + +T + Sbjct: 75 STIDEKTTVQQWIKMWLEEYKMNECRPSTIDRYFGIYRNYIENTNLGVVKLKDLKPLTLQ 134 Query: 118 HIRSGVESRKHTPSSAIQFL-TSMRVLFKWAVRQEYVAINPCLSVERPKRK-TEGIRPWT 175 + + + +K+ + I+ + + + A +++ + NPCL V PK K E + +T Sbjct: 135 NYYNELIKKKNKTTDTIKIINKVLSGGMRQAQKEQLILNNPCLFVTLPKSKVKEEVMTFT 194 Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII-- 233 E+ + F + + S+ R F L SGLR + + + +K K+ + Sbjct: 195 MEEQRIFLNAIED-SRDRCIFNLALGSGLRLGELLALKWSDIDFSSNEVKVSKSVKRVKC 253 Query: 234 -----------------------TVELPDG------------FMKLLAMTP--IGKETFF 256 + LP + L I F Sbjct: 254 FDENTNTKTKIIEQLPKTRYSERKIPLPKATINELKRHKNIILQEKLMAGDIYIDNNLVF 313 Query: 257 INNDKQKMNATQFSIWFKAKATKAGVNKS-AHGVRKFSATISADAGATAHELMATYGWKT 315 N ++A + +K+ KA + H +R AT + G + + G + Sbjct: 314 PNVLGGYIDARNLTKRYKSILNKANIPYRKFHALRHTYATRLFENGVSLKVIQVLLGHSS 373 Query: 316 VD-QAETYTK 324 +D A YT Sbjct: 374 MDITANIYTH 383 >gi|157377259|ref|YP_001475859.1| tyrosine recombinase XerC [Shewanella sediminis HAW-EB3] gi|157319633|gb|ABV38731.1| tyrosine recombinase XerC [Shewanella sediminis HAW-EB3] Length = 301 Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats. Identities = 35/271 (12%), Positives = 88/271 (32%), Gaps = 19/271 (7%) Query: 79 RKSAHWGSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGVESRKHTPSSAI 134 SA L+ ++ ++ +++ ++ + D + + S + + +P S Sbjct: 12 YLSAE-RQLSKHTVRNYLYELERVSKRLDETTSWLDVTREQLQGALSQIHRQGLSPRSIS 70 Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQ 191 L++++ + + + + NP +S+ PK+ + + + + Sbjct: 71 LTLSAIKQFCDFLLAEGAIQANPAMSLSAPKQNKPLPKNMDLDSVTHLLEIDGDDPLSVR 130 Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-IITVELPDGFMKLLAMTPI 250 + E SGLR ++ V+ + +K G+ V + + M + Sbjct: 131 DKAIMELFYSSGLRLAELAALDVKDIDFGERQVKVMGKGSKERIVPIGNMAMNAIECWLT 190 Query: 251 -------GKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAG 301 F+ +++ + +N H +R AT ++ Sbjct: 191 CRKGIVCEDGALFVTGKGKRLAHRSIQARLAKWGQEQALNMRVHPHKLRHSFATHMLESS 250 Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLG 332 A + G + + YT D L Sbjct: 251 ADLRAVQELLGHANLSTTQIYT-SLDFQHLA 280 >gi|218263932|ref|ZP_03477873.1| hypothetical protein PRABACTJOHN_03563 [Parabacteroides johnsonii DSM 18315] gi|218222401|gb|EEC95051.1| hypothetical protein PRABACTJOHN_03563 [Parabacteroides johnsonii DSM 18315] Length = 370 Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats. Identities = 45/218 (20%), Positives = 77/218 (35%), Gaps = 15/218 (6%) Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 K S+A L ++ + + A + + N ++ K + T E+++ Sbjct: 155 KMMASTANNNLNKLKCVLRIAYEERRIKENIAPRLKHAKEDSTRREFLTLEEVRMLAETP 214 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL----QNNI-FSIKTQKTGTIITVELPDGF 241 E R A F +GLR SD R +++ I T+KT T + L D Sbjct: 215 CEKPVIRSAALFSCLTGLRISDIIRLQWENIIRGADGGWCMHIVTKKTRTEAVLPLSDEA 274 Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299 + L G+ F + + T ++ K AG+ K + HG R AT+ Sbjct: 275 LAL--CGERGEGQVF-----KGLTKTILPLYLKDWIKSAGIRKHITFHGFRHTYATLQLA 327 Query: 300 AGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKNS 336 AG + + V + Y D R + Sbjct: 328 AGTDLYTISKMLTHSNVGTTQVYVDVVSDLKRKASEQI 365 >gi|83595067|ref|YP_428819.1| tyrosine recombinase XerD subunit [Rhodospirillum rubrum ATCC 11170] gi|83577981|gb|ABC24532.1| tyrosine recombinase XerD subunit [Rhodospirillum rubrum ATCC 11170] Length = 328 Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats. Identities = 40/265 (15%), Positives = 80/265 (30%), Gaps = 26/265 (9%) Query: 89 VNSRISFESYFDQIIRKSGD-FDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWA 147 Y + K D + T + + + + P S + L+ +R + Sbjct: 41 EAYGRDLRDYAAFLREKGLDGLTVSRPTLRAYLATMAAAGLAPRSQARKLSCLRQFHGFL 100 Query: 148 VRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-----GSQPRLAFEFLLYS 202 V + +P + ++ P+ R ++ ++ G + R+ E L + Sbjct: 101 VSEGRRPDDPTIGLDSPRLGRPLPRVLSEAEVDALLVAAEAGEGARGLRARVLLELLYST 160 Query: 203 GLRCSDSCRAGVQ-HLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK 261 GLR S+ + ++ + K V L L I + T + Sbjct: 161 GLRVSELVSLPLSVANRDPETILVRGKGDKERLVPLGLPARAALRDWLIARPTTLPASGA 220 Query: 262 ----------------QKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGA 302 + F+ A +AG++ S H +R A+ GA Sbjct: 221 ARRRADRFLFPSSAAEGHLTRDGFAKMLGELALRAGIDPARVSPHVLRHCFASHMLAHGA 280 Query: 303 TAHELMATYGWKTVDQAETYTKGAD 327 + G + + YT D Sbjct: 281 DLRGVQTLLGHADIATTQIYTHVLD 305 >gi|325297633|ref|YP_004257550.1| integrase family protein [Bacteroides salanitronis DSM 18170] gi|324317186|gb|ADY35077.1| integrase family protein [Bacteroides salanitronis DSM 18170] Length = 368 Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats. Identities = 34/263 (12%), Positives = 87/263 (33%), Gaps = 19/263 (7%) Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHTPSSA 133 Y + + ++ ++ +YF + + ++ I + +K + S Sbjct: 96 YLELLEQKRYSPSTIKTYRAYFSDFVEYHKGRNIDRLKVADINRYILYLVNEKKISVSQQ 155 Query: 134 IQFLTSMRVLFKWAV--RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191 + +++ ++ +++Y + R K +K ++++ S + Sbjct: 156 NMRINAIKFYYEQVKGGKRQYYG-----GITRAKEYKTVPEVLSKNEIKRILDQLS-NIK 209 Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-----ITVELPDGFMKLLA 246 + +GLR S+ + + + + S++ G ++ +L + + Sbjct: 210 HHCMISLVYSAGLRRSELLNLTPKDINSEMMSVRIMGKGKKCRYSLLSPKLLEELRRYFR 269 Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAH--GVRKFSATISADAGATA 304 K F Q +A+ K A +AG+ H R AT + G Sbjct: 270 EYRPKKWLFEGETPGQPYSASALVKVLKEAAQRAGIKHRVHVHTARHSFATHLLEQGTDL 329 Query: 305 HELMATYGWKTVDQAETYTKGAD 327 H + G + Y ++ Sbjct: 330 HTIQELLGHNDIKTTAIYLHTSN 352 >gi|282890174|ref|ZP_06298704.1| hypothetical protein pah_c014o025 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281499831|gb|EFB42120.1| hypothetical protein pah_c014o025 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 329 Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats. Identities = 41/250 (16%), Positives = 81/250 (32%), Gaps = 25/250 (10%) Query: 100 DQIIRKSGDFDYRKITTKHIRSGVESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAIN 156 +++ IT K IR + + ++ L+S+R FK+ + Q++++ N Sbjct: 63 ERLKTYDAALVLDTITRKTIRGFLAHLSDNQVHKRTVVRRLSSLRTFFKYTLAQKWISAN 122 Query: 157 PCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRLAFEFLLYSGLRCSDSCRA 212 P +E P+ + + + + +Q G + R+ E SGLR S+ Sbjct: 123 PTEELESPRVEKKVPNSLSYDQVQTLFDQPDTKTFLGFRDRVIMELFYSSGLRVSELVAL 182 Query: 213 GVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLLAM---------------TPIGKETFF 256 Q N+ K V + + F Sbjct: 183 DRQEFDPKNLLIKLKGKGKKERIVPITKNAADWINAYLTHPERCVEIDGHFAQQDSNAIF 242 Query: 257 INNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWK 314 +N ++ F T +G+ + H +R AT + G + G Sbjct: 243 LNRLGTRLTTRSVDRKFDKYLTASGLIGKVTPHTIRHTIATHWLENGMDLKTIQMILGHI 302 Query: 315 TVDQAETYTK 324 ++ YT+ Sbjct: 303 SLATTTIYTQ 312 >gi|189499195|ref|YP_001958665.1| integrase family protein [Chlorobium phaeobacteroides BS1] gi|189494636|gb|ACE03184.1| integrase family protein [Chlorobium phaeobacteroides BS1] Length = 384 Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats. Identities = 47/287 (16%), Positives = 92/287 (32%), Gaps = 24/287 (8%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD-----YRKITTKHIRSGVESR 126 K L Y K+ ++ S + R +R+I + Sbjct: 95 KALFLSYFKAEAEKKSKPGYPGNWGSTLKHLTRFVEKHRSVRVTFREIDKAFCEGFKDYL 154 Query: 127 KHTPSS-AIQFLTSMRVLFKW---------AVRQEYVAINPCLSVERPKRKTEGIRPWTK 176 + ++ + L+S + A++ ++++P V RPK + T Sbjct: 155 RDEATTRTGKGLSSASQGAYYGKFKACLNKAIKDGILSVDPAKGVARPKIVSHKREYLTF 214 Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGV---QHLQNNI-FSIKTQKTGTI 232 +++Q + F F +GLR SD + + + QKT + Sbjct: 215 DELQAMAKAECRNPTLKRMFLFSCLTGLRFSDCHKLIWGEVEQYGDGWRIVFHQQKTKGL 274 Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290 ++ +L+ + F K + SI + KAG+ K + H R Sbjct: 275 QYHDISQQARELMGEQGAADDRVFFAISK---YSAYLSIVLREWVLKAGITKHLTFHSGR 331 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 A + + G + L G + ++ Y D+ R R Sbjct: 332 HTFAVLQLENGTDIYTLSKLLGHREIEVTAIYADILDKKRREAMTER 378 >gi|315640716|ref|ZP_07895818.1| tyrosine recombinase XerC [Enterococcus italicus DSM 15952] gi|315483471|gb|EFU73965.1| tyrosine recombinase XerC [Enterococcus italicus DSM 15952] Length = 310 Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats. Identities = 41/265 (15%), Positives = 95/265 (35%), Gaps = 25/265 (9%) Query: 85 GSLAVNSRISFESYF---DQIIRKSGDFDYRKITTKHIR---SGVESRKHTPSSAIQFLT 138 + ++ ++ F + +SG D+ I + +R S + ++++ +S + + Sbjct: 29 RGYSEKTQAAYAEDFFQFLDFLEQSGSRDFLAIDYRDVRIYLSFLNDQEYSRNSISRKVA 88 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF----KSFWSEGSQPRL 194 S+R +++ +++ + NP V K+ + R + ++++QQ K + Sbjct: 89 SLRSFYQYLLKRMVLTENPFAYVHLKKKNQKLPRFFYEDELQQLFDSVKGTEPLEQRNLA 148 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPD------------GF 241 E L GLR S+ + + + + K V + G Sbjct: 149 LLEILYGCGLRVSECAAITLTSIDWEHQILLVYGKGSKERIVPFNEHANKAMSHYIQNGR 208 Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISAD 299 +LL + F+N+ + AT ++ ++ H +R AT + Sbjct: 209 KELLTQFKKEHDYLFVNHLGSPVTATGIEYILNQLLKRSQLDSEIHPHKLRHTFATHLLN 268 Query: 300 AGATAHELMATYGWKTVDQAETYTK 324 GA + G + + Y Sbjct: 269 NGADMRTVQELLGHANLSTTQIYAH 293 >gi|227529183|ref|ZP_03959232.1| site-specific DNA tyrosine recombinase, XerD [Lactobacillus vaginalis ATCC 49540] gi|227350908|gb|EEJ41199.1| site-specific DNA tyrosine recombinase, XerD [Lactobacillus vaginalis ATCC 49540] Length = 292 Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats. Identities = 42/275 (15%), Positives = 105/275 (38%), Gaps = 23/275 (8%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQ---IIRKSGDFDYRKITTKHIRSGVESR 126 T+ I Y + + N+R S+ ++ SG ++++ + + + Sbjct: 4 TIDHFID-YLMTQ--KGRSQNTRESYRHDLERCAAFFTASGINTWQEVDQYAVINVIAEM 60 Query: 127 KHTPSS---AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT-EGIRPWTKEDMQQF 182 K + + ++S+R L+++ +R+ V +NP ++ + T + ++++++Q Sbjct: 61 KREDRASTTINRTISSLRQLYRYLLRRHEVQVNPMDYIDLEEVATRKAPVTLSQQEIEQL 120 Query: 183 KSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVEL 237 + G + R E + +G+ S+ + ++ ++ V L Sbjct: 121 FAIPDTTTVNGLRDRTLLELMYGTGMLVSELINLKRSQVHFDLQILQLQDNPRHQRIVPL 180 Query: 238 ----PDGFMKLLAMTPIG-KETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290 + + L T + F+N +M FK K+G++K + +R Sbjct: 181 GKIAKEWLARYLRATAGDSSDYVFLNARGGQMTRQGVWKNFKEIVRKSGLSKKITLQTLR 240 Query: 291 KFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324 GA+ + G +T ++ E+Y + Sbjct: 241 HTFTADLLKNGASWQAVQTLLGRETGRESFESYIR 275 >gi|254283616|ref|ZP_04958584.1| phage integrase family protein [gamma proteobacterium NOR51-B] gi|219679819|gb|EED36168.1| phage integrase family protein [gamma proteobacterium NOR51-B] Length = 355 Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats. Identities = 40/289 (13%), Positives = 93/289 (32%), Gaps = 18/289 (6%) Query: 49 SALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD 108 +A+ + + P T +E H + + + ++ + G Sbjct: 49 AAIALGADPQADARQRKAVP-TWNAFFTESYL-PHAKQAKRTWKNDADMHRLRLGPRFGA 106 Query: 109 FDYRKITTKHIRSGVESRKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK 165 +IT + ++ + P++A L +R AV + +NP V++ Sbjct: 107 TPINRITRQEVQQFHNELREDGLAPATADHHLKLLRHALNLAVDWGMLQVNPAAKVKQFN 166 Query: 166 RKTEGIRPWTKEDMQQFKSFWSEGS-QPRLAFEF-LLYSGLRCSDSCRAGVQHLQNNIFS 223 + R + E+ ++ + +P LL +G R ++ A + + Sbjct: 167 SENLVERYLSDEEFKRLMRVLRDHENRPMACIVLWLLATGARSGEAKAATWDDIARDQTV 226 Query: 224 IKTQ----KTGTIITVELPDGFMKLL---AMTPIGKETFFINNDKQKMNATQFSIWFKAK 276 + K+ V L D +L + F+ S ++ Sbjct: 227 WTIRSEHSKSKKRRAVPLNDIARSVLQEIRASGCTSGHLFVGKRGP---YKYLSKNWERI 283 Query: 277 ATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 +A + H +R A++ ++G + +E+ G Y+ Sbjct: 284 CEEADLQGLRLHDLRHNYASMLVNSGHSLYEVQQALGHSDPKVTMRYSH 332 >gi|300705544|ref|YP_003747147.1| site-specific tyrosine recombinase [Ralstonia solanacearum CFBP2957] gi|299073208|emb|CBJ44566.1| site-specific tyrosine recombinase [Ralstonia solanacearum CFBP2957] Length = 329 Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats. Identities = 53/290 (18%), Positives = 93/290 (32%), Gaps = 42/290 (14%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF----DYRKITTKHIRSGVESR--- 126 I+ Y + L+ ++ ++ + R F D ++ HIRS + Sbjct: 20 IAAYLDVLKFERQLSPHTLENYTRELAVLQRLGARFAAGVDLTRLLPHHIRSMIAHLHGN 79 Query: 127 KHTPSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQ 181 + S + L+ R +KW A+R+ V NP V PK + + E M+Q Sbjct: 80 GLSGRSIARALSVWRGWYKWLALREAAVTANPVDGVRAPKSPKRLPKALSVEQAVALMEQ 139 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN------------IFSIKTQKT 229 E + R E GLR S+ ++H++ + K Sbjct: 140 LPGDDPETVRDRAVNELFYSCGLRLSELVGLDLRHVKAGDYASAGWLDLEAREVMVLGKG 199 Query: 230 GTIITVEL--------------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKA 275 TV + + P F++ +++ Q I K Sbjct: 200 NKYRTVPVGSKAAEALAAWLAVRPQLAR-PDAAPEDAHALFLSARGKRLTQRQIQIRMKR 258 Query: 276 KATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 A AGV H +R AT + + G ++ + YT Sbjct: 259 NAIAAGVPADVHPHVLRHSFATHMLQSSGDLRAVQELLGHASIASTQVYT 308 >gi|251778719|ref|ZP_04821639.1| phage integrase family protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243083034|gb|EES48924.1| phage integrase family protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 380 Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats. Identities = 41/375 (10%), Positives = 122/375 (32%), Gaps = 45/375 (12%) Query: 15 RTRHGKIIYYFRKGH--GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72 R R YYF G G+R ++ +T A + + + ++ + Sbjct: 6 RKRGSSWYYYFEAGKINGKRNKIERKGGNTKKEALAALRSALNELSSTGSCVQETNMSFS 65 Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131 + + + N++ +++++ + + G + +++ ++ + + Sbjct: 66 DYLDYWFNEYVMKNCKYNTQQTYKTFININLKPNLGIYKLKQLNYAGLQEFLNKQYAHGY 125 Query: 132 SAIQFLTSMRVLFKWAVRQ-----EYVAINPC--LSVERPKRKTEGIRPWTKEDMQQFKS 184 S L +R + ++ + + +NP L++ R ++ + E+ + Sbjct: 126 SKN-TLARLRSIITHSLEMAVFPYDLIKVNPAQYLTIPRFDNISKKNIVISIENFNKITE 184 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK---------------- 228 + G+ + + +G+R + C + +IK +K Sbjct: 185 RFPCGTSFYIPLQIAFNTGMRVGEVCGLTWDCVDFENKTIKVEKILIFKTKQGYEFSTPK 244 Query: 229 -TGTIITVELPDGFMKLLAMTP--------------IGKETFFINNDKQKMNATQFSIWF 273 +I T+ + D + +L + + T Sbjct: 245 TKKSIRTISIGDTLINILKAHKKWQEQNKQEYGEYYNDNNFVCTKENGSFVTMTSLRYLS 304 Query: 274 KAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIRLG 332 K + + + H +R AT+ + GA ++ G ++ Y+ + ++ Sbjct: 305 KIVNMELQIEFNFHSLRHTHATMLLEGGANIKDIQDRLGHSSLSTTMNIYSHVTN--KMK 362 Query: 333 IKNSRRISSVVDSDD 347 + +++++ Sbjct: 363 NDTVNILENMINNKK 377 >gi|303232711|ref|ZP_07319396.1| phage integrase, N-terminal SAM domain protein [Atopobium vaginae PB189-T1-4] gi|302481197|gb|EFL44272.1| phage integrase, N-terminal SAM domain protein [Atopobium vaginae PB189-T1-4] Length = 324 Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats. Identities = 32/292 (10%), Positives = 89/292 (30%), Gaps = 42/292 (14%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYR---KITTKHIRSGV---ESRK 127 I EY + + + + N+ ++ + D IT + + + + Sbjct: 7 IDEYLRYIRFERNFSANTLEAYARDLNAYCEFLTDKHIDTPVHITRRVVEEYLSYVATLD 66 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK---- 183 PSS + +++++ ++ V ++ +P + PK+ + + ++++ Sbjct: 67 KAPSSVQRCVSAIKSFHRFMVIEQICTAHPTADIALPKKPALLPQVLSHTEVERLLDEPF 126 Query: 184 ------SFWSEGS------------QPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFS 223 + + + + E L GLR S+ C ++ + + Sbjct: 127 LQELQPAAHTTKQGTTTMTKAACFWRDKAILELLYGCGLRVSELCNLTCDNVSRTDEVLR 186 Query: 224 IKTQKTGTIITVELPDGFMKL----------LAMTPIGKETFFINNDKQKMNATQFSIWF 273 + + + + + L F++ ++ Sbjct: 187 VIGKGSKERVVPLIGSALAAYTRYVDTWRAELYNPRRSNHAVFLSVRGSAISRQAVFALV 246 Query: 274 KAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 + G+ H +R AT + G + G ++ + YT Sbjct: 247 EKYGRMVGIRGLHPHTLRHTYATHLLEGGMDLRIVQELLGHASIATTQLYTH 298 >gi|255975766|ref|ZP_05426352.1| phage integrase [Enterococcus faecalis T2] gi|307277985|ref|ZP_07559069.1| tyrosine recombinase XerC [Enterococcus faecalis TX0860] gi|312899495|ref|ZP_07758825.1| tyrosine recombinase XerC [Enterococcus faecalis TX0470] gi|255968638|gb|EET99260.1| phage integrase [Enterococcus faecalis T2] gi|306505382|gb|EFM74568.1| tyrosine recombinase XerC [Enterococcus faecalis TX0860] gi|311293365|gb|EFQ71921.1| tyrosine recombinase XerC [Enterococcus faecalis TX0470] Length = 299 Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats. Identities = 39/267 (14%), Positives = 96/267 (35%), Gaps = 29/267 (10%) Query: 85 GSLAVNSRISFE---SYFDQIIRKSGDFDY---RKITTKHIRSGVESRKHTPSSAIQFLT 138 + ++ +++ +F ++ SG+ +Y + + S + ++++ +S + + Sbjct: 18 RGYSEKTKKAYQEDIQHFFSFLKTSGNDNYLTVEHLDVRAYLSELYDQEYSRNSISRKIA 77 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS----FWSEGSQPRL 194 S+R +++ ++ E + NP V K++ R + +++M + + Sbjct: 78 SLRSFYQFLLKNEAIQENPFSYVHMKKKQLRLPRFFYEKEMDALFESAQGEHPLDLRNQA 137 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-ITVE------------LPDGF 241 E L +G+R S+ V + + G V L +G Sbjct: 138 LLEVLYGTGIRVSECANLTVDAVDFQASVLLVHGKGNKDRYVPFGSFAQDALKDYLENGR 197 Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQ----FSIWFKAKATKAGVNKSAHGVRKFSATIS 297 L+ F+N+ +++ T + K + A ++ H +R AT Sbjct: 198 ALLMTKYQKKHPYVFVNHHGEQITPTGIEYVLNQLIKKSSLNAEIH--PHMLRHTFATHL 255 Query: 298 ADAGATAHELMATYGWKTVDQAETYTK 324 + GA + G + + Y Sbjct: 256 LNNGADMRTVQELLGHANLSTTQIYAH 282 >gi|53717850|ref|YP_106836.1| site-specific tyrosine recombinase XerC [Burkholderia pseudomallei K96243] gi|76808989|ref|YP_331806.1| site-specific tyrosine recombinase XerC [Burkholderia pseudomallei 1710b] gi|126451479|ref|YP_001064490.1| site-specific tyrosine recombinase XerC [Burkholderia pseudomallei 1106a] gi|134283593|ref|ZP_01770292.1| tyrosine recombinase XerC [Burkholderia pseudomallei 305] gi|167736614|ref|ZP_02409388.1| site-specific tyrosine recombinase XerC [Burkholderia pseudomallei 14] gi|167813712|ref|ZP_02445392.1| site-specific tyrosine recombinase XerC [Burkholderia pseudomallei 91] gi|167822227|ref|ZP_02453698.1| site-specific tyrosine recombinase XerC [Burkholderia pseudomallei 9] gi|167843822|ref|ZP_02469330.1| site-specific tyrosine recombinase XerC [Burkholderia pseudomallei B7210] gi|167909037|ref|ZP_02496128.1| site-specific tyrosine recombinase XerC [Burkholderia pseudomallei 112] gi|226199796|ref|ZP_03795347.1| tyrosine recombinase XerC [Burkholderia pseudomallei Pakistan 9] gi|242316661|ref|ZP_04815677.1| tyrosine recombinase XerC [Burkholderia pseudomallei 1106b] gi|254182208|ref|ZP_04888805.1| tyrosine recombinase XerC [Burkholderia pseudomallei 1655] gi|254188137|ref|ZP_04894649.1| tyrosine recombinase XerC [Burkholderia pseudomallei Pasteur 52237] gi|254196193|ref|ZP_04902617.1| tyrosine recombinase XerC [Burkholderia pseudomallei S13] gi|254261174|ref|ZP_04952228.1| tyrosine recombinase XerC [Burkholderia pseudomallei 1710a] gi|254295751|ref|ZP_04963208.1| tyrosine recombinase XerC [Burkholderia pseudomallei 406e] gi|52208264|emb|CAH34195.1| integrase/recombinase [Burkholderia pseudomallei K96243] gi|76578442|gb|ABA47917.1| tyrosine recombinase XerC [Burkholderia pseudomallei 1710b] gi|126225121|gb|ABN88661.1| tyrosine recombinase XerC [Burkholderia pseudomallei 1106a] gi|134245002|gb|EBA45097.1| tyrosine recombinase XerC [Burkholderia pseudomallei 305] gi|157806287|gb|EDO83457.1| tyrosine recombinase XerC [Burkholderia pseudomallei 406e] gi|157935817|gb|EDO91487.1| tyrosine recombinase XerC [Burkholderia pseudomallei Pasteur 52237] gi|169652936|gb|EDS85629.1| tyrosine recombinase XerC [Burkholderia pseudomallei S13] gi|184212746|gb|EDU09789.1| tyrosine recombinase XerC [Burkholderia pseudomallei 1655] gi|225928147|gb|EEH24183.1| tyrosine recombinase XerC [Burkholderia pseudomallei Pakistan 9] gi|242139900|gb|EES26302.1| tyrosine recombinase XerC [Burkholderia pseudomallei 1106b] gi|254219863|gb|EET09247.1| tyrosine recombinase XerC [Burkholderia pseudomallei 1710a] Length = 310 Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats. Identities = 44/279 (15%), Positives = 93/279 (33%), Gaps = 30/279 (10%) Query: 75 ISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTP 130 I +Y + H L+ ++ ++ D++ + + +T +RS V + Sbjct: 10 IVDYLSNLRHVRKLSDHTLRAYAHELDELKKLANGRPLDSLTAVDMRSAVARAHAGGLSA 69 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 S L++ R ++W + + NP +V PKR + + +D + G+ Sbjct: 70 RSISHRLSAWRAFYRWFSQHVEMNANPVAAVRAPKRAKTLPKALSVDDTAALMDAPTAGT 129 Query: 191 ----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS------------IKTQKTGTIIT 234 + E SGLR ++ ++++++ + K Sbjct: 130 AESLRDHAILELFYSSGLRLAELIGLDIEYVKDGAYRSAGWLDLAEAEVTVRGKGDKERK 189 Query: 235 VEL----PDGFMKLLAM----TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-- 284 V + D LA+ F++ +M+ K A AG+ Sbjct: 190 VPVGRKALDALHAWLAVRGEFVKHDPRPLFLSVRGNRMSPGVVRERVKRAALAAGIPANV 249 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 H +R AT + + G ++ + YT Sbjct: 250 HPHVLRHSFATHVLQSSGDLRAVQELLGHASISATQVYT 288 >gi|332177003|gb|AEE12693.1| Tyrosine recombinase xerC [Porphyromonas asaccharolytica DSM 20707] Length = 407 Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats. Identities = 52/300 (17%), Positives = 108/300 (36%), Gaps = 22/300 (7%) Query: 68 PTTLKWLISEYRKSAHWGSLAVNSRI----SF-ESYFDQIIRKSGDFDYRKITTKHIRSG 122 TL+ I R + L +N+ S+ E + + D + ++ Sbjct: 11 EQTLEAFIEYLRLERNASPLTLNTYRPAITSYMECALELASDEWQPSDADRDLVRNWIMQ 70 Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 + T ++ + L++++ +K+ + V NP + PKR+ T+ +++ Sbjct: 71 QMDDELTSTTVNKNLSAVKSFYKYLQLRGVVDNNPTRYLRGPKREHTLPSFLTQAQIEEA 130 Query: 183 KSFWS------EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITV 235 + RL E + +GLR ++ Q + S++ G V Sbjct: 131 LETIPTDPEDFLAVRNRLIIETIYQTGLRRAEVASLETQQVDLASMSLRVVGKGRKERIV 190 Query: 236 ELPDGFMKLLAMTPIGKE-------TFFINNDKQKMN-ATQFSIWFKAKATKAGVNKS-A 286 + + + KE FF+ + ++ A + + KA G+ + A Sbjct: 191 PFGEALKEQMKAYLTLKEQKVGQSRYFFVTLKCRPLSGADVYQVVHKALDIVPGLPRRGA 250 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKNSRRISSVVDS 345 H +R AT +AGA + G ++ YT + ++++ R S V S Sbjct: 251 HTLRHSFATEMLNAGAPITSIKELLGHSNLETTTRYTHTSFEQLKQLYHAHPRAQSQVPS 310 >gi|196230590|ref|ZP_03129452.1| integrase family protein [Chthoniobacter flavus Ellin428] gi|196225520|gb|EDY20028.1| integrase family protein [Chthoniobacter flavus Ellin428] Length = 315 Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats. Identities = 41/245 (16%), Positives = 87/245 (35%), Gaps = 18/245 (7%) Query: 110 DYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169 + + + + +S + ++++ F+W ++ + + + P+ + Sbjct: 66 EVTHQQITDYLAHKKRLGLSAASIKLIVVALKIFFRWLHARKRIERDVAEVLPLPRTERY 125 Query: 170 GIRPWTKEDMQQFKSF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSI 224 + + + G + R E L SGLR S+ A +++L + Sbjct: 126 LPETMNELQVDRLLEGISIDAPRGLRDRALLELLYASGLRVSELVNARLENLDLDARIIR 185 Query: 225 KTQKTGTIITVELPDGFMKLLAMTP-------IGKET---FFINNDKQKMNATQFSIWFK 274 T K + V + + +GK+T F+++ K+ + K Sbjct: 186 VTGKGNKMRLVPVGQKACDAIRAYLEKERPEMVGKKTGSEVFLSSRGTKLTTVRIWQIVK 245 Query: 275 AKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 A A AG++ + H +R AT GA + G + + YT D+ RL Sbjct: 246 ACAKNAGLDINVYPHLLRHSFATHLLSNGADLRIIQEMLGHADISTTQIYTH-VDQQRLK 304 Query: 333 IKNSR 337 + R Sbjct: 305 AVHHR 309 >gi|163788404|ref|ZP_02182850.1| tyrosine type site-specific recombinase [Flavobacteriales bacterium ALC-1] gi|159876724|gb|EDP70782.1| tyrosine type site-specific recombinase [Flavobacteriales bacterium ALC-1] Length = 376 Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats. Identities = 43/272 (15%), Positives = 87/272 (31%), Gaps = 11/272 (4%) Query: 63 SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG 122 R P + + Y A N+ S+ F+ I + +I +R+ Sbjct: 95 RQRSLPENFRHCPTSYLDKLQLKKYANNTVKSYILAFETFINYHKAKELIQINENDVRNY 154 Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 + S ++ + K+ N +ERP++ + + +KED+ + Sbjct: 155 ILKLIQENKSDSYINIAINSI-KFYYESVLGMPNRFYQIERPRKAKKLPKVLSKEDVLKV 213 Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK----TQKTGTIITV--E 236 + + + + L SG+R ++ + + + I+ K + Sbjct: 214 ITN-TNNLKHKCIVSLLYSSGIRRNELIHLKISDIDSKRMLIRIDAAKGKKDRYTLLSHA 272 Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA--GVNKSAHGVRKFSA 294 L K F ++ +A K A KA + + H +R A Sbjct: 273 LLKDLRDYYKQWKPEK-YIFEGLYGKQYSAQSVGQIVKNAAIKARIQITVTPHMLRHSFA 331 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGA 326 T + G ++ G + E YT A Sbjct: 332 THLLEDGVDIRQIQVLLGHSSTKTTEIYTHVA 363 >gi|237708280|ref|ZP_04538761.1| tyrosine type site-specific recombinase [Bacteroides sp. 9_1_42FAA] gi|229457833|gb|EEO63554.1| tyrosine type site-specific recombinase [Bacteroides sp. 9_1_42FAA] Length = 376 Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats. Identities = 57/297 (19%), Positives = 101/297 (34%), Gaps = 21/297 (7%) Query: 40 ESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF 99 E+ FI SAL + PK+ SP P Y ++ + ++ ++ +YF Sbjct: 70 ETAFID--YSALKNTQPKKSGKTSPAIPPG--------YAETLRQLRYSEHTVRAYTAYF 119 Query: 100 DQIIRKSGDFDYRKITTKHIRSGVESRKHTP--SSAIQFLTSMRVLFKWAVRQEYVAINP 157 + + + R I + I + + T SS Q L + F + Sbjct: 120 KEFQQYFAGRNLRYIRPEEINAYIVHLIDTRGISSCQQNLRINSIKFYFEKVLGLERK-- 177 Query: 158 CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL 217 C V+R KR+ +KE+++ + F L +GLR S+ + Sbjct: 178 CYEVKRAKRERTLPDVLSKEEIKSILDATGPDIRLFCMFSLLYSAGLRISELLDLKPHDI 237 Query: 218 Q--NNIFSIKTQKTGTIITVELPDGFMKLLAMTPI---GKETFFINNDKQKMNATQFSIW 272 ++ ++ K L ++ L +E F + + S Sbjct: 238 NVSRSLIRVRQGKGRKDRYTLLSKPLVRKLTEYTKLYKPQEWLFERYKGEPFTESIVSKK 297 Query: 273 FKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 K A +AG+ K H +R AT + G + G + E Y AD Sbjct: 298 LKEAAKEAGITKRVYPHLLRHSFATHLIEQGTDLKIVKELLGHNQLKTTEMYVHIAD 354 >gi|189485678|ref|YP_001956619.1| tyrosine recombinase XerC [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|170287637|dbj|BAG14158.1| tyrosine recombinase XerC [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 314 Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats. Identities = 38/264 (14%), Positives = 93/264 (35%), Gaps = 29/264 (10%) Query: 85 GSLAVNSRISFESYFD--QIIRKSGDFDYRKITTKHIRSGVES---RKHTPSSAIQFLTS 139 + + ++ +++ + + ++ + IR +E +K + ++ + L Sbjct: 38 RNFSAHTLRAYKRDISDFALFLQKKRLNFSHAGKRDIREFLEELGNKKLSRATLARKLAV 97 Query: 140 MRVLFKWAVRQEYVAIN-----PCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194 + +K+ + + + N P K+ + T+ +MQ + + R Sbjct: 98 LHSFYKFLIINKIIKENFIESMPAS----LKKDKKVPSFLTENEMQMLLNLPDLKPRDRA 153 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLA------ 246 E GLR + ++++ +N+ ++ ++ I V + D + + Sbjct: 154 MIELFYSCGLRIEELVSLDLKNIDFISNVVTVTGKRNKERI-VPVGDICLHAIKDYINKR 212 Query: 247 ---MTPIG-KETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300 P + F+++ +++ KAG K S H +R AT D Sbjct: 213 RNLGLPYDIRSPVFLSDRAKRLGQRTARRILHRYFVKAGFTKKVSPHTLRHTFATHILDR 272 Query: 301 GATAHELMATYGWKTVDQAETYTK 324 G + G K + + YT Sbjct: 273 GCDLRSVQEMLGHKNLSSTQIYTH 296 >gi|116747518|ref|YP_844205.1| phage integrase family protein [Syntrophobacter fumaroxidans MPOB] gi|189030087|sp|A0LEB8|XERC_SYNFM RecName: Full=Tyrosine recombinase xerC gi|116696582|gb|ABK15770.1| phage integrase family protein [Syntrophobacter fumaroxidans MPOB] Length = 328 Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats. Identities = 43/272 (15%), Positives = 90/272 (33%), Gaps = 32/272 (11%) Query: 85 GSLAVNSRISFESYFDQIIRK------SGDFDYRKITTKHIRSGVESRKHTP--SSAIQF 136 L+ + ++ DQ + D ++ IR + + T +S + Sbjct: 33 RGLSAETVRAYAGDLDQFREHMNATAGTADPRLSQVDADAIRGYLAALHKTRKKTSRARK 92 Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS------ 190 L+++R + + +E V NP V PK T+ +D+ + G+ Sbjct: 93 LSTLRSFYHFLNDRELVRENPAALVAYPKLGTKIPSFLGVDDVFHLLDSLNAGAARAGAS 152 Query: 191 ----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVEL----PDGF 241 + FE + +G+R S+ + + ++ K V + D Sbjct: 153 WRRCRNWALFECMYSTGVRVSELAGMDESDVDFHEGMVRVLGKGSKERIVPVGGKALDAV 212 Query: 242 MKLLAMTPIG-------KETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKF 292 L + F N +++ + + + G+ + S HG+R Sbjct: 213 KLYLRVLDSQFPEARRMGSALFRNARGRRLTTRSVHRLLRMELRRCGLWQHLSPHGLRHT 272 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTK 324 AT ++GA + G + + YT Sbjct: 273 FATHLLNSGADLRAIQEMLGHSNLSTTQRYTH 304 >gi|115353184|ref|YP_775023.1| site-specific tyrosine recombinase XerC [Burkholderia ambifaria AMMD] gi|115283172|gb|ABI88689.1| tyrosine recombinase XerC [Burkholderia ambifaria AMMD] Length = 306 Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats. Identities = 45/280 (16%), Positives = 89/280 (31%), Gaps = 32/280 (11%) Query: 75 ISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTP 130 I+ Y + H L+ ++ ++ D++ + + +T +R V + Sbjct: 6 IAAYLSNLKHVRQLSEHTLRAYSHELDELKKLAAGRPLDTLTAVDMRGAVARAHAGGLSA 65 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQFKSFW 186 S L++ R ++W + + NP +V PKR + + +D M + Sbjct: 66 RSISHRLSAWRAFYRWLAQHIEMPANPVAAVRAPKRPKTLPKALSVDDASALMDAPLAGT 125 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRA-------------GVQHLQNNIFSIKTQKTGTII 233 +EG + E SGLR ++ G L +++ K Sbjct: 126 TEGIRDHAILELFYSSGLRLAELVGLDVRYTQADGYRSAGWLDLAEAEVTVR-GKGNKER 184 Query: 234 TVELPDGFMKLLAMT--------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284 V + + L F++ +M K A AG+ Sbjct: 185 KVPVGRKAIDALNAWLAVRGEFVKHDPHPLFVSVRGNRMAPGVVRERVKRAALAAGIPAN 244 Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 H +R AT + + G ++ + YT Sbjct: 245 VHPHVLRHSFATHVLQSSGDLRAVQELLGHASISATQVYT 284 >gi|218461906|ref|ZP_03501997.1| phage integrase [Rhizobium etli Kim 5] Length = 383 Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats. Identities = 45/311 (14%), Positives = 92/311 (29%), Gaps = 17/311 (5%) Query: 52 TGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFD 110 + ++ TTL+ L + + + +E + II G Sbjct: 62 AAGKDPASERDHRKQAVTTLRELCERFLADYAETHVKAKTAKDYEQLIRKLIIPALGRHG 121 Query: 111 YRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVA--INPCLSVERPKRKT 168 + I + P + L + +F A + NPC V + + Sbjct: 122 IADLKRSDISQFHHDLRDRPYLGNRALAVLSKMFNLAEQWGLRDDNTNPCRHVPKFRESK 181 Query: 169 EGIRPWTKEDMQQFKSFWSEG-------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQN-- 219 R T ++++ ++ A L+ +G R S+ + +H+ Sbjct: 182 RE-RYLTNGELKRLGEVLAQAETSNTESPHMIAAIRLLILTGARLSEITKLQWEHVDLEH 240 Query: 220 NIFSIKTQKTGTIITVELPDGFMKLLAMTPI--GKETFFINNDKQKMNATQFSIWFKAKA 277 + + KTG + L D + +L P G + + W + + Sbjct: 241 GLLRLPDSKTGKK-DIVLNDAALDVLKKLPRASGNPYVIVGGRSGQHLVNVKGPWGRLRK 299 Query: 278 TKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNS 336 + H +R A+++A G + + G Y D +R Sbjct: 300 KAGLDDLRIHDLRHSFASVAAGMGESLPIIGKLLGHTQTQTTARYAHLQMDPLRAASNAI 359 Query: 337 RRISSVVDSDD 347 S + D Sbjct: 360 GAAVSSAMNPD 370 >gi|89091916|ref|ZP_01164871.1| tyrosine recombinase [Oceanospirillum sp. MED92] gi|89083651|gb|EAR62868.1| tyrosine recombinase [Oceanospirillum sp. MED92] Length = 299 Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats. Identities = 30/260 (11%), Positives = 86/260 (33%), Gaps = 20/260 (7%) Query: 85 GSLAVNSRISFESYFDQIIRKSGD------FDYRKITTKHIRSGVESRKHTPSSAIQFLT 138 L+ ++ ++ ++ + + + + + + S + L+ Sbjct: 17 RQLSPHTLDNYTRDINRFFDFTEEQGIPAWSSVTAKQVRQFAAQIHRQGLAGKSIQRSLS 76 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS---FWSEGSQPRLA 195 ++R F++ R+ V NP +V+ PK + + + + + + ++ Sbjct: 77 ALRSFFRFLSREGVVDQNPADAVQAPKSQRKLPETLDVDQIDRLLDIPVKDAVSARDSAI 136 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAM------- 247 E + SGLR S+ + L S++ K + + ++ + Sbjct: 137 MELIYSSGLRISELVGLDIHSLDLADHSLRVLGKGNKQRELPIGRKALQAIDRWLDYRHE 196 Query: 248 -TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATA 304 + F+++ ++++ VN H +R A+ ++ Sbjct: 197 LASFDENALFVSSRGKRISVRTVQQRMYHWGKYLEVNGHVHPHRLRHSFASHMLESSGDL 256 Query: 305 HELMATYGWKTVDQAETYTK 324 + G + + + YT Sbjct: 257 RAVQELLGHEDISTTQIYTH 276 >gi|330964222|gb|EGH64482.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv. actinidiae str. M302091] Length = 290 Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats. Identities = 36/259 (13%), Positives = 92/259 (35%), Gaps = 19/259 (7%) Query: 85 GSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIR---SGVESRKHTPSSAIQFLT 138 ++ ++ ++ ++ +K+ + + +H+R + + + S + L+ Sbjct: 7 RQVSPHTLEAYRRDLSKVLAYCQKAQLSSWNDLDIQHLRSFTARQHQQGQSSRSLARMLS 66 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRL 194 ++R +K+ R+ +P + PK + + + Q E + + Sbjct: 67 AVRGFYKYLNREGLCQHDPANGLSPPKGERRLPKTLDTDRTAQLLDGGVEDDFLAHRDQA 126 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV--------ELPDGFMKLLA 246 E L SGLR S+ + L ++ G+ V + + ++ L A Sbjct: 127 IMELLYSSGLRLSELTGLNLDQLDLRDGLVQVLGKGSKTRVLPVGSKARQALETWLPLRA 186 Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAK-ATKAGVNKSAHGVRKFSATISADAGATAH 305 +T + F++ +++ + K + G N H +R A+ ++ Sbjct: 187 LTNPQDDAVFVSQQGKRLGPRAVQLRIKTAGERELGQNLHPHMLRHSFASHLLESSQDLR 246 Query: 306 ELMATYGWKTVDQAETYTK 324 + G + + YT Sbjct: 247 AVQELLGHADIKTTQIYTH 265 >gi|282854671|ref|ZP_06264006.1| phage integrase, N-terminal SAM domain protein [Propionibacterium acnes J139] gi|282582253|gb|EFB87635.1| phage integrase, N-terminal SAM domain protein [Propionibacterium acnes J139] gi|314981983|gb|EFT26076.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL110PA3] gi|315090894|gb|EFT62870.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL110PA4] Length = 300 Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats. Identities = 42/277 (15%), Positives = 93/277 (33%), Gaps = 27/277 (9%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRK---SGDFDYRKITTKHIRSGVESRKHTPS 131 + ++ + N+ + + ++ GD +I +R+ + + + Sbjct: 7 VEDFCDHLLALRRSPNTIRGYRADLIDLMSHAYSHGDNILGRIGISQVRAWLADTRVAGA 66 Query: 132 SAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI---------RPWTKEDM 179 SA + ++ RV F+WA + V+ +P ++ K + Sbjct: 67 SAATMQRRWSAARVFFRWAANEGLVSADPTATLNSVKVPKRLPATLGVDQARHILDEAVA 126 Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELP 238 Q G++ E L GLR + C + + + ++K T K TV + Sbjct: 127 QARHDESPHGARDAAILEVLYGGGLRVGELCGLDLGDVDRSRHTVKVTGKGDKERTVPMG 186 Query: 239 DGFMKLLAMT---------PIGKETFFINNDKQKMNATQFSIWFK--AKATKAGVNKSAH 287 ++ + P + F+ ++++ +A + H Sbjct: 187 APALRAIDTWLPRREEWVGPHSGQALFLGERGRRIDQRVVRRVVHTHLRAEPDSPDLGPH 246 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 G+R AT + GA + G K++ + YT Sbjct: 247 GLRHAMATHLLEGGADLRTVQDMLGHKSLATTQIYTH 283 >gi|146280903|ref|YP_001171056.1| site-specific tyrosine recombinase XerC [Pseudomonas stutzeri A1501] gi|166918896|sp|A4VGW3|XERC_PSEU5 RecName: Full=Tyrosine recombinase xerC gi|145569108|gb|ABP78214.1| integrase/recombinase XerC [Pseudomonas stutzeri A1501] gi|327479172|gb|AEA82482.1| site-specific tyrosine recombinase XerC [Pseudomonas stutzeri DSM 4166] Length = 299 Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats. Identities = 42/267 (15%), Positives = 92/267 (34%), Gaps = 21/267 (7%) Query: 77 EYRKSAHWGSLAVNSRISFESYFDQII------RKSGDFDYRKITTKHIRSGVESRKHTP 130 EY +SA L+ +S ++ D+++ R +G D + +H+ + + + Sbjct: 10 EYLRSAR--QLSGHSLDAYRRDLDKVLTYCERERIAGWRDLQGRHLRHLIAEQHRQGQSS 67 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW-TKEDMQQFKSFWS-- 187 S + L+S+R L+++ ++ +P + PK + R T MQ Sbjct: 68 RSLARLLSSVRGLYRYLNQEGLCEHDPATGLSAPKGERRLPRLLDTDRAMQLLDGGVEDD 127 Query: 188 -EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT-VELPDGFMKLL 245 + + E SGLR S+ + L ++ G + + + + L Sbjct: 128 FIARRDQAMLELFYSSGLRLSELVGLNLDQLDLAAGLVRVLGKGNKVRELPVGSKAREAL 187 Query: 246 AM-------TPIGKETFFINNDKQKMNATQFSIWFKAK-ATKAGVNKSAHGVRKFSATIS 297 FI +++ A + + + G + H +R A+ Sbjct: 188 QAWLPLRTLAGPADGAVFIGQQGRRLGARAVQLRVRQAGVRELGQHLHPHMLRHSFASHL 247 Query: 298 ADAGATAHELMATYGWKTVDQAETYTK 324 ++ + G + + YT Sbjct: 248 LESSQDLRSVQELLGHADIGTTQIYTH 274 >gi|103487281|ref|YP_616842.1| phage integrase [Sphingopyxis alaskensis RB2256] gi|98977358|gb|ABF53509.1| phage integrase [Sphingopyxis alaskensis RB2256] Length = 303 Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats. Identities = 49/281 (17%), Positives = 97/281 (34%), Gaps = 18/281 (6%) Query: 75 ISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133 I + + A + N+ ++ +Q + + + R + SSA Sbjct: 7 IDRFLEMMAAERGASRNTLTAYRRDLEQAAERVKGPLGAADAAALRQLMADYRSLSASSA 66 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF----------K 183 + L+++R F + + + A NP L + RP + R T +++++ + Sbjct: 67 ARKLSALRQFFAFLLDEGERADNPALDIARPATRRPLPRILTHDEIRRLFEQAVAEAEGE 126 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFM 242 + + + L E L SGLR ++ + + + + G V L Sbjct: 127 APPAGAVRMLLLLELLYGSGLRATELVSLPRRAVLREREYLIVRGKGDKERLVPLSARAR 186 Query: 243 KLLAM---TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATI 296 + + K ++ + + A +AGV+ S H +R AT Sbjct: 187 AAFDRWLPLLADGSPWLFPSGKAHISRVRLFQMLRDLAARAGVDPAAVSPHVLRHAFATH 246 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 + GA L G + E YT R + + N R Sbjct: 247 LLEGGADLRALQLMLGHADIATTEIYTHVDSRRLVELVNRR 287 >gi|320535374|ref|ZP_08035488.1| putative tyrosine recombinase XerC [Treponema phagedenis F0421] gi|320147776|gb|EFW39278.1| putative tyrosine recombinase XerC [Treponema phagedenis F0421] Length = 307 Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats. Identities = 43/240 (17%), Positives = 83/240 (34%), Gaps = 32/240 (13%) Query: 115 TTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174 + + + +K P+S + L ++R L+++AVR NP L+V+ K + R Sbjct: 53 DIRIFVADLREKKFAPASINRMLATVRGLYRYAVRLNLCQTNPALAVKNLKLPKKLPRFL 112 Query: 175 TKEDMQQFKS-------FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKT 226 E ++F + W + F L +G R S+ ++++ + + +I Sbjct: 113 FPEQAKEFYNLPVNKGLLWEA--RDAALFSVLYSTGCRVSEIAGLDMKNIDSKLNSAIVL 170 Query: 227 QKTGTIITVELPDGFMKLLAM--------------------TPIGKETFFINNDKQKMNA 266 K V D + L + T ++ FIN ++ Sbjct: 171 GKGSKERKVFFADFAKEYLQIYLAERNELLKKHAGEIQRDKTGRKRDALFINQRGMPLSV 230 Query: 267 TQFSIWF-KAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 + A + K S H R A+ GA + G + + + YT Sbjct: 231 QGIQYIIDRYAAVSPDLKKISPHVFRHSFASTLISRGADIRVVQEMLGHENISTTQKYTH 290 >gi|294669162|ref|ZP_06734243.1| tyrosine recombinase XerC [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291308906|gb|EFE50149.1| tyrosine recombinase XerC [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 303 Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats. Identities = 44/280 (15%), Positives = 90/280 (32%), Gaps = 28/280 (10%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQII-------RKSGDFDYRKITTKHIRSGVESRK 127 + Y + ++ ++ Q+ + G D+ + K + R Sbjct: 15 LDPYLAELQRQGKSEHTLTAYRRDLTQLFNLLPAHGQSVGRNDFVAVLKKLSQQNQSER- 73 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 S + L++ R + +RQ+ + +P + ++ PK + E + + Sbjct: 74 ----SLARKLSAWRQYCAFLMRQKLLDADPTVRLKAPKAPERLPKAVDAEPLNRLLDHAP 129 Query: 188 EGS----QPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDGF 241 + + FE L SGLR ++ + ++ K G V L Sbjct: 130 AENGLDVRDLAIFELLYGSGLRVAEVHGLNTDDILLDEGWVEVR-GKGGKHRQVPLGSRS 188 Query: 242 MKLLAM------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFS 293 + L G+ F + +++ Q + A K G + S H +R Sbjct: 189 VSALRAYLPQRIAQSGETALFTGHTGKRLGIRQIQNRLRDWAVKNGSPQHLSPHMMRHSY 248 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 A+ + + G + + YTK D RL Sbjct: 249 ASHLLQSSGDIRAIQELLGHSNLSATQIYTK-LDFDRLAQ 287 >gi|296136669|ref|YP_003643911.1| integrase family protein [Thiomonas intermedia K12] gi|295796791|gb|ADG31581.1| integrase family protein [Thiomonas intermedia K12] Length = 336 Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats. Identities = 49/303 (16%), Positives = 100/303 (33%), Gaps = 48/303 (15%) Query: 70 TLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG---VES 125 TL+ L ++Y A LA + +++ D +++++ +I + HIR + + Sbjct: 13 TLRQLAADYLAHAQTERRLAEGTLVNYRRDLDDLLQRAETLGAAQIESVHIRRWAAQLHA 72 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 +P + L++ R F+W R +VA NP V PK + + + ++ Sbjct: 73 GGMSPRAIAARLSAWRSFFRWMGRLGFVAANPVQDVRAPKAAKPLPKALSVDQAVALAAY 132 Query: 186 WSEGSQP---------------------RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224 + S P E L GLR S+ V+ + I Sbjct: 133 SPQKSTPAARPHRRPHQAEPFATRSARVHAIAELLYSCGLRVSELTGLDVRASKTARGWI 192 Query: 225 --------KTQKTGTIITVELPDGFMKLLA-------------MTPIGKETFFINNDKQK 263 T K +V + + L + F+ + Sbjct: 193 DWDAAEATVTGKGNKRRSVPIGRPALLALRQWLEQRPALLRPDADADAQVALFLGARGAR 252 Query: 264 MNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321 + + + + A AG++ H +R A+ + + G ++ + Sbjct: 253 LTPQRVWLELREHARAAGLDARVHPHMLRHSFASHVLQSSGDLRAVQELLGHSSIATTQV 312 Query: 322 YTK 324 YT+ Sbjct: 313 YTR 315 >gi|237756308|ref|ZP_04584862.1| integrase/recombinase XerD [Sulfurihydrogenibium yellowstonense SS-5] gi|237691535|gb|EEP60589.1| integrase/recombinase XerD [Sulfurihydrogenibium yellowstonense SS-5] Length = 297 Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats. Identities = 47/285 (16%), Positives = 98/285 (34%), Gaps = 28/285 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK---HTPSSAIQFLTSMR 141 + N+ ++ F+Q I+ GD + +IT I + + S+ + L S+ Sbjct: 15 ADKSPNTVKNYRVDFNQFIKIVGDKNINEITKADIAKFRMTLQMQNRKSSTIARKLASVN 74 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY 201 LF++ + E V +P RPK + + E++++ Q + L Sbjct: 75 SLFQYLMDLELVNSSPITKSHRPKVSQKIPSALSNEEVKKLIDALDS-IQDKAIVILFLT 133 Query: 202 SGLRCSDSCRAGVQHL--------------------QNNIFSIKT-QKTGTIITVELP-D 239 +GLR S+ ++ + +I I+ K V + Sbjct: 134 TGLRSSELLSIKKSNIIVERNGQTFSIDRLIEGEVKEGDIAYIRVVGKGDKEREVPITGK 193 Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISAD 299 L+ E +N ++ + K + H +R +AT++ Sbjct: 194 PLEILVQYLKSINEFLDVNEYIFPISYHLLWRKIRNIGKKLAITLHPHKLRHTAATMALS 253 Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344 +GA + G + Y K + L K ++ +S ++ Sbjct: 254 SGAELRVIQELLGHASPVTTARYAKVGQKQLL--KATKALSENIE 296 >gi|187779614|ref|ZP_02996087.1| hypothetical protein CLOSPO_03210 [Clostridium sporogenes ATCC 15579] gi|187773239|gb|EDU37041.1| hypothetical protein CLOSPO_03210 [Clostridium sporogenes ATCC 15579] Length = 326 Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats. Identities = 51/255 (20%), Positives = 102/255 (40%), Gaps = 23/255 (9%) Query: 103 IRKSGDFDYRKITTKHIRSGV----ESRKHTPSSAIQFLTSMRVLFKWAV-RQEYVAINP 157 I D D + I+ + + V R + + + + ++R FK+ + + + NP Sbjct: 67 ISNISDEDIKNISLTDLFAFVSFAENYRNNGSYAKARKVATLRSFFKFLQGKVKIIKENP 126 Query: 158 CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQ 215 L +E PK T ++ ++ S + R L GLR S+ C + Sbjct: 127 ALELESPKISKRNPVYLTLDESKRLLSSIDGKFKERDLCIVTMFLNCGLRLSELCGINIS 186 Query: 216 HLQNNIFSIKTQKTGTIITVELPDGFMKLLA----------MTPIGKETFFINNDKQKMN 265 +++N++ ++ K TV L +K L + K+ F++ + ++N Sbjct: 187 NIKNDVLTVI-GKGNKERTVYLNKACIKTLNDYLSVRKEMGEKIVDKDALFLSKNYTRIN 245 Query: 266 ATQFSIWFKAKATKAGVNK---SAHGVRKFSATISADAGA-TAHELMATYGWKTVDQAET 321 + K K+G++ S H +R +AT+ G L G + + + Sbjct: 246 KRSVEMLVKKYVKKSGLDGEKYSPHKLRHTAATLMYKHGGVDIRSLQMILGHENISTTQI 305 Query: 322 YTK-GADRIRLGIKN 335 YT +DR+R +K+ Sbjct: 306 YTHVDSDRLREAVKS 320 >gi|256840427|ref|ZP_05545935.1| tyrosine recombinase XerC [Parabacteroides sp. D13] gi|256737699|gb|EEU51025.1| tyrosine recombinase XerC [Parabacteroides sp. D13] Length = 374 Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats. Identities = 55/295 (18%), Positives = 104/295 (35%), Gaps = 25/295 (8%) Query: 46 AY--MSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII 103 AY SAL + PK+ SP P Y ++ + ++ ++ +YF + Sbjct: 70 AYIDYSALKNTLPKKNGKTSPAIPPG--------YAETLRQLRYSEHTVRAYTAYFKEFQ 121 Query: 104 RKSGDFDYRKITTKHIRSGV----ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCL 159 + + R I + I + + ++R + + S++ F+ + QE C Sbjct: 122 QYFAGRNLRYIRPEEINAYIVHLIDTRGISSCQQNLRINSIKFYFEKVLGQERK----CY 177 Query: 160 SVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ- 218 V+R KR+ +KE+++ + F L +GLR S+ + Sbjct: 178 EVKRAKRERTLPDVLSKEEIKSILDATGPDIRLFCMFSLLYSAGLRISELLDLKPHDINV 237 Query: 219 -NNIFSIKTQKTGTIITVELPDGFMKLLAMTPI---GKETFFINNDKQKMNATQFSIWFK 274 ++ ++ K L ++ L +E F + + S K Sbjct: 238 SRSLIRVRQGKGRKDRYTLLSKPLVRKLTEYTKLYKPQEWLFERYKGEPFTESIVSKKLK 297 Query: 275 AKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 A +AG+ K H +R AT + G + G + E Y AD Sbjct: 298 EAAKEAGITKRVYPHLLRHSFATHLIEQGTDLKIVKELLGHNQLKTTEMYVHIAD 352 >gi|229845511|ref|ZP_04465639.1| site-specific tyrosine recombinase XerC [Haemophilus influenzae 6P18H1] gi|229811527|gb|EEP47228.1| site-specific tyrosine recombinase XerC [Haemophilus influenzae 6P18H1] Length = 295 Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats. Identities = 40/260 (15%), Positives = 89/260 (34%), Gaps = 21/260 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITT------KHIRSGVESRKHTPSSAIQFLT 138 ++ ++ +++ D II+ D T + I + + + S L+ Sbjct: 16 RQMSPHTITNYQHQLDAIIKILAQQDIHAWTQVTPSVVRFILAESKKQGLKEKSLALRLS 75 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS---FWSEGSQPRLA 195 ++R + V+Q + +NP + PK+ + E +QQ + + R Sbjct: 76 ALRRFLSFLVQQGELKVNPATGISAPKQGRHLPKNMDGEQVQQLLANDSKEPIDIRDRAI 135 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------ELPDGFMKLLA 246 E + SGLR S+ + + + ++ G V + + Sbjct: 136 LELMYSSGLRLSELHGLDLNSINTRVREVRVIGKGNKERVVPFGRYASHAIQEWLKVRAL 195 Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATA 304 P E F++ +++ + + G+N + H +R AT +A + Sbjct: 196 FNP-KDEALFVSQLGNRISHRAIQKRLETWGIRQGLNSHLNPHKLRHSFATHMLEASSDL 254 Query: 305 HELMATYGWKTVDQAETYTK 324 + G + + YT Sbjct: 255 RAVQELLGHSNLSTTQIYTH 274 >gi|311113293|ref|YP_003984515.1| tyrosine recombinase XerD [Rothia dentocariosa ATCC 17931] gi|310944787|gb|ADP41081.1| tyrosine recombinase XerD [Rothia dentocariosa ATCC 17931] Length = 391 Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats. Identities = 43/237 (18%), Positives = 77/237 (32%), Gaps = 31/237 (13%) Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 R P+S + + ++R + + +P +V+ PK + + E Sbjct: 134 TRDVTLPLPLGPNSIARTMAAVRGAHSFWHASRILETDPAAAVKPPKNVKRLPKAVSVEQ 193 Query: 179 MQQFKS----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI------------- 221 MQ+ + G + R EFL +G R S+ + + Sbjct: 194 MQKLLAIPSLKTPTGLRNRAILEFLYATGARVSEMLATDLDDIHLGEKPRDENGESIAVP 253 Query: 222 FSIKT-QKTGTIITVELPDGFMKLL-----AMTPI------GKETFFINNDKQKMNATQF 269 ++ K G V L + L P G F+N ++ Sbjct: 254 GYVRLFGKGGKERLVPLGSYAQRALEDYIVRARPKFASHGKGTAALFLNGRGSRLGRQGA 313 Query: 270 SIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 + K A +AG+ + S H +R AT GA + G ++ + YTK Sbjct: 314 WLILKETAEEAGLSSDFSPHSIRHSFATHLVQGGADIRVVQELLGHASIATTQVYTK 370 >gi|254251134|ref|ZP_04944452.1| Site-specific recombinase XerC [Burkholderia dolosa AUO158] gi|124893743|gb|EAY67623.1| Site-specific recombinase XerC [Burkholderia dolosa AUO158] Length = 306 Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats. Identities = 48/280 (17%), Positives = 92/280 (32%), Gaps = 32/280 (11%) Query: 75 ISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTP 130 I+ Y + H L+ ++ ++ D++ + + +T +R V + Sbjct: 6 IAAYLSNLKHVRQLSEHTLRAYTHELDELKKLAAGRPLETLTAVDMRGAVARAHAGGLSA 65 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQFKSFW 186 S L++ R ++W + + NP +V PKR + + +D M + Sbjct: 66 RSIAHRLSAWRAFYRWLAQHVEMPANPVAAVRAPKRPKTLPKALSVDDASALMDAPLADT 125 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRA-------------GVQHLQNNIFSIKTQKTGTII 233 +EG + R E SGLR ++ G L +++ K Sbjct: 126 TEGIRDRAILELFYSSGLRLAELIGLDVAYAQADGYRSAGWLDLAEAEVTVR-GKGNKER 184 Query: 234 TVELPDGFMKLLAMTPIGKETF--------FINNDKQKMNATQFSIWFKAKATKAGVNK- 284 V + + L + F F++ +M K A AG+ Sbjct: 185 KVPVGRKAIDALNAWLAVRGEFVRHDPHPLFLSVRGNRMAPGVVRERVKRAALAAGIPAN 244 Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 H +R AT + + G +V + YT Sbjct: 245 VHPHVLRHSFATHVLQSSGDLRAVQELLGHASVAATQIYT 284 >gi|319900063|ref|YP_004159791.1| integrase family protein [Bacteroides helcogenes P 36-108] gi|319415094|gb|ADV42205.1| integrase family protein [Bacteroides helcogenes P 36-108] Length = 376 Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats. Identities = 55/295 (18%), Positives = 104/295 (35%), Gaps = 25/295 (8%) Query: 46 AY--MSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII 103 AY SAL + PK+ SP P Y ++ + ++ ++ +YF + Sbjct: 72 AYINYSALKNTLPKKNGKTSPAIPPG--------YAETLRQLRYSEHTVRAYTAYFREFQ 123 Query: 104 RKSGDFDYRKITTKHIRSGV----ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCL 159 + + R I + I + + ++R + + S++ F+ + QE C Sbjct: 124 QYFAGRNLRYIRPEEINAYIVHLIDTRGISSCQQNLRINSIKFYFEKVLGQERK----CY 179 Query: 160 SVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ- 218 V+R KR+ +KE+++ + F L +GLR S+ + Sbjct: 180 EVKRAKRERTLPDVLSKEEIKSILDATGPDIRLFCMFSLLYSAGLRISELLDLKPHDINV 239 Query: 219 -NNIFSIKTQKTGTIITVELPDGFMKLLAMTPI---GKETFFINNDKQKMNATQFSIWFK 274 ++ ++ K L ++ L +E F + + S K Sbjct: 240 SRSLIRVRQGKGRKDRYTLLSKPLVRKLTEYTKLYKPQEWLFERYKGEPFTESIVSKKLK 299 Query: 275 AKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 A +AG+ K H +R AT + G + G + E Y AD Sbjct: 300 EAAKEAGITKRVYPHLLRHSFATHLIEQGTDLKIVKELLGHNQLKTTEMYVHIAD 354 >gi|296115017|ref|ZP_06833660.1| integrase/recombinase XerD [Gluconacetobacter hansenii ATCC 23769] gi|295978435|gb|EFG85170.1| integrase/recombinase XerD [Gluconacetobacter hansenii ATCC 23769] Length = 304 Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats. Identities = 53/266 (19%), Positives = 89/266 (33%), Gaps = 26/266 (9%) Query: 85 GSLAVNSRISFESYFDQI---IRKSGDFDYRKITTK--HIRSGVESRKHTPSSAIQFLTS 139 A+N+ ++ D + + G + + SG+ + + + L+ Sbjct: 17 RGAALNTLKAYRRDLDDLGTALAVEGASLPQASARQLGAYLSGLAQAGLSARTQARRLSC 76 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQ---- 191 +R + + VR+ NP +E P+ R ++ D+ + G+ Sbjct: 77 LRQYYLFLVREGRRPDNPASMLEAPRLGATLPRFLSEGDVDALLAACVARADAGAHEVRR 136 Query: 192 ---PRLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELP----DGFMK 243 R A E L SGLR S+ L+ + K G V L D + Sbjct: 137 MLVARTALEILYASGLRISELLSLPRAALERTTGMLLVRGKGGRERMVPLSSRARDAADE 196 Query: 244 LLAMTPIGKETFFI--NNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISA 298 L+ M + F N + M F A KAG++ S H +R AT Sbjct: 197 LMRMDRPLRSMFLFPGRNPLRAMTRQGFDRILHDVALKAGLDPQRLSPHVLRHSFATHLL 256 Query: 299 DAGATAHELMATYGWKTVDQAETYTK 324 GA L G + + YT Sbjct: 257 SHGADLRALQVLLGHADITTTQIYTH 282 >gi|170703226|ref|ZP_02894029.1| tyrosine recombinase XerC [Burkholderia ambifaria IOP40-10] gi|170131859|gb|EDT00384.1| tyrosine recombinase XerC [Burkholderia ambifaria IOP40-10] Length = 306 Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats. Identities = 46/280 (16%), Positives = 90/280 (32%), Gaps = 32/280 (11%) Query: 75 ISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTP 130 I+ Y + H L+ ++ ++ D++ + + +T +R V + Sbjct: 6 IAAYLSNLKHVRQLSEHTLRAYTHELDELKKLAAGRPLDTLTAVDMRGAVARAHAGGLSA 65 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQFKSFW 186 S L++ R ++W ++ + NP +V PKR + + +D M + Sbjct: 66 RSIAHRLSAWRAFYRWLAQRIEMPANPVAAVRAPKRPKTLPKALSVDDASALMDAPLAGT 125 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRA-------------GVQHLQNNIFSIKTQKTGTII 233 +EG + E SGLR ++ G L +++ K Sbjct: 126 TEGIRDHAILELFYSSGLRLAELIGLDVMYTQADGYRSAGWLDLDEAEVTVR-GKGNKER 184 Query: 234 TVELPDGFMKLLAMT--------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284 V + + L F++ +M K A AG+ Sbjct: 185 KVPVGRKAIDALNAWLAVRGEFVKHDPHPLFVSVRGNRMAPGVVRERVKRAALTAGIPAN 244 Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 H +R AT + + G +V + YT Sbjct: 245 VHPHVLRHSFATHVLQSSGDLRAVQELLGHASVSATQVYT 284 >gi|153931223|ref|YP_001384765.1| phage integrase family site specific recombinase [Clostridium botulinum A str. ATCC 19397] gi|152927267|gb|ABS32767.1| site-specific recombinase, phage integrase family [Clostridium botulinum A str. ATCC 19397] Length = 281 Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats. Identities = 49/261 (18%), Positives = 92/261 (35%), Gaps = 13/261 (4%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPSS 132 I+ Y + L++ + ++++ I I +R + R K SS Sbjct: 9 IAIYLAAKKLDGLSLKTLLNYKYNL-AIFADYLRKPLATINAMDLRIFLAQRCKKMKASS 67 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192 ++ ++ F W +EY+ NP L +++ K+ R +E+++ + + Sbjct: 68 VNGQISILKSFFGWLHMEEYIPKNPSLKLKQTKQPKRVRRALNQEELELLRQACKTN-RE 126 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-----ITVELPDGFMKLLAM 247 + EFL+ +G R S+ + N S+ G V+ K LA+ Sbjct: 127 KALLEFLISTGCRLSEVVGIDKNDIDWNEMSLHVIGKGNKERKVYFDVKTKILLKKYLAI 186 Query: 248 TPIGKETFFINNDKQKMNATQFSIW--FKAKATKAGVNKS--AHGVRKFSATISADAGAT 303 F+ + SI K A + G KS H R AT ++G Sbjct: 187 RNDITPALFVASKGTHARLGGRSIQREIKKIAKRVGTEKSIYPHLFRHSFATGKINSGMP 246 Query: 304 AHELMATYGWKTVDQAETYTK 324 L G + + Y + Sbjct: 247 LPVLQHIMGHENPATTQIYAE 267 >gi|74318546|ref|YP_316286.1| tyrosine recombinase XerC [Thiobacillus denitrificans ATCC 25259] gi|74058041|gb|AAZ98481.1| tyrosine recombinase XerC [Thiobacillus denitrificans ATCC 25259] Length = 294 Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats. Identities = 40/267 (14%), Positives = 84/267 (31%), Gaps = 20/267 (7%) Query: 78 YRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT---PSSA 133 Y + A L+ ++ ++ + + R + +T+ IR + + +S Sbjct: 7 YLQHLAAERRLSAHTLSAYARDLENLARLTDGKPLDTLTSHDIRGAIVKLRAGGLAAASV 66 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS-----E 188 + L+S R + +A R+ NPC + PK + + + Sbjct: 67 ARQLSSWRGFYAFACRRLGYPDNPCAGLRPPKASRALPDILSPDACARLLDAPDGDEDLL 126 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------ELPD 239 ++ R FE SGLR S+ + L + G + + Sbjct: 127 ATRDRAMFELFYSSGLRLSELVGIDLPDLDLASGEARVTGKGKKTRLVPVGRQAVAAITA 186 Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATIS 297 L + E F+ ++ + A +G+ + H +R AT Sbjct: 187 WLPLRLTLVRTPTEALFVGQRGARLTPRNVQLRLARWARASGLGQHVHPHMLRHAFATHV 246 Query: 298 ADAGATAHELMATYGWKTVDQAETYTK 324 + + G ++ + YT Sbjct: 247 LQSSGDLRAVQEMLGHASISTTQVYTH 273 >gi|288925733|ref|ZP_06419664.1| integrase [Prevotella buccae D17] gi|288337388|gb|EFC75743.1| integrase [Prevotella buccae D17] Length = 407 Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats. Identities = 38/212 (17%), Positives = 81/212 (38%), Gaps = 16/212 (7%) Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR-PWTKEDMQQFKSFWSEGSQP--RL 194 + L +AV +E + +PCL ++ + + ++E++Q+ + R Sbjct: 190 QRFKRLINYAVEKEVIKKSPCLKIKIMNKGDILNKDILSREELQKLFATHYPNESEVVRR 249 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQK-----TGTIITVELPDGFMKLLAM 247 AF ++G+R D + N I + + K + +++ L D + ++ Sbjct: 250 AFAVTCFTGIRHCDLATLTYGCIDYSNKIMTFRQSKVQHDSNVSGVSIPLNDTLVAIIGE 309 Query: 248 TPIG-KETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATA 304 P G K++ I + + + +AG++K + H R AT GA Sbjct: 310 KPEGAKDSDLIFAL---PSIEGSNKVLRHWIKRAGIDKHITWHCGRHSFATNLLSTGANI 366 Query: 305 HELMATYGWKTVDQAETYTKGADRIRLGIKNS 336 + G ++ + Y + D + NS Sbjct: 367 KVVSELLGHSSLKFTQKYVRALDDQKKAAINS 398 >gi|221201912|ref|ZP_03574949.1| tyrosine recombinase XerC [Burkholderia multivorans CGD2M] gi|221207582|ref|ZP_03580590.1| tyrosine recombinase XerC [Burkholderia multivorans CGD2] gi|221215807|ref|ZP_03588766.1| tyrosine recombinase XerC [Burkholderia multivorans CGD1] gi|221164343|gb|EED96830.1| tyrosine recombinase XerC [Burkholderia multivorans CGD1] gi|221172428|gb|EEE04867.1| tyrosine recombinase XerC [Burkholderia multivorans CGD2] gi|221178332|gb|EEE10742.1| tyrosine recombinase XerC [Burkholderia multivorans CGD2M] Length = 306 Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats. Identities = 46/280 (16%), Positives = 90/280 (32%), Gaps = 32/280 (11%) Query: 75 ISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTP 130 I+ Y + H L+ ++ ++ D++ + + + IR V + Sbjct: 6 IAAYLSNLKHVRQLSEHTLRAYTHELDELKKLAAGRPLDTLVAADIRGAVARAHAGGLSA 65 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQFKSFW 186 S L++ R ++W ++ + NP +V PKR + + +D M + Sbjct: 66 RSISHRLSAWRAFYRWLAQRVEMPANPVAAVRAPKRPKTLPKALSVDDASALMDAPLADT 125 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRA-------------GVQHLQNNIFSIKTQKTGTII 233 +EG + E SGLR ++ G L +++ K Sbjct: 126 TEGIRDHAILELFYSSGLRLAELIGLDVAYTQTGDYRSAGWLDLAEAEVTVR-GKGNKER 184 Query: 234 TVELPDGFMKLLAMT--------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284 V + + L F++ +M+ K A AG+ Sbjct: 185 KVPVGRKAIDALNAWLAVRGEFVKHDPHPLFLSVRGNRMSPGVVRERVKRAALAAGIPAH 244 Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 H +R AT + + G +V + YT Sbjct: 245 VHPHVLRHSFATHVLQSSGDLRAVQELLGHASVSATQVYT 284 >gi|167835019|ref|ZP_02461902.1| site-specific tyrosine recombinase XerC [Burkholderia thailandensis MSMB43] Length = 306 Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats. Identities = 42/280 (15%), Positives = 88/280 (31%), Gaps = 32/280 (11%) Query: 75 ISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTP 130 I++Y + H L+ ++ ++ D++ + + +T +R V + Sbjct: 6 IADYLSNLRHVRKLSDHTLRAYAHELDELKKLANGRPLESLTAVDMRGAVARAHAGGLSA 65 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 S L++ R ++W + + NP +V PK + + +D + G+ Sbjct: 66 RSISHRLSAWRAFYRWFSQHVEMNANPVAAVRAPKHAKTLPKALSVDDAAALMDAPTAGT 125 Query: 191 ----QPRLAFEFLLYSGLRCSDSCRA-------------GVQHLQNNIFSIKTQKTGTII 233 + E SGLR ++ G L +++ K Sbjct: 126 AENLRDHAILELFYSSGLRLAELIGLDIEYAKDGDYRSEGWLDLAEAEVTVR-GKGDKER 184 Query: 234 TVELPDGFMKLLAMT--------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284 V + + L F++ +M+ K A AG+ Sbjct: 185 KVPVGRKAIDALNAWLAVRGEFVKRDPRPLFLSVRGNRMSPGVVRERVKRAALAAGIPAN 244 Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 H +R AT + + G ++ + YT Sbjct: 245 VHPHVLRHSFATHVLQSSGDLRAVQELLGHASISATQVYT 284 >gi|319427383|gb|ADV55457.1| ISSod25 integrase [Shewanella putrefaciens 200] Length = 287 Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats. Identities = 43/267 (16%), Positives = 90/267 (33%), Gaps = 21/267 (7%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE----SRK 127 L+ ++ + +R ++ Q+ + + IT + + + R Sbjct: 2 SSLLQQFHDEIRLRGYSARTRSAYLRAITQL-QHYANQPLDSITDEQLTAYFRYLNLERH 60 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 H+ ++ L + L++ + +++ + + PKR + + + +D+ + Sbjct: 61 HSRATLKLQLNGIHFLYEHVLGRDF-----TVQLSLPKRPHKLPQLLSCQDIAALL-YHC 114 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLL 245 + + R GLR S+ V + +K K V + + LL Sbjct: 115 QNLKQRAMLALCYGCGLRVSELTHIKVADIDGQRQLLKVCQGKGAYDRLVIISPTLLTLL 174 Query: 246 A---MTPIGKETFFINNDK---QKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATIS 297 E F + ++ + F A AG+ S H +R AT Sbjct: 175 RQYWRAYHPVEWLFASTYHDVVYPLHESTFRKALAKSARLAGITKPCSPHSLRHAYATHQ 234 Query: 298 ADAGATAHELMATYGWKTVDQAETYTK 324 AG H+L A G ++ E Y Sbjct: 235 LQAGMPLHQLQAQLGHHSIKSTERYLH 261 >gi|53724457|ref|YP_104732.1| site-specific tyrosine recombinase XerC [Burkholderia mallei ATCC 23344] gi|67639320|ref|ZP_00438190.1| tyrosine recombinase XerC [Burkholderia mallei GB8 horse 4] gi|121598868|ref|YP_994214.1| site-specific tyrosine recombinase XerC [Burkholderia mallei SAVP1] gi|124383751|ref|YP_001028133.1| site-specific tyrosine recombinase XerC [Burkholderia mallei NCTC 10229] gi|126441319|ref|YP_001057248.1| site-specific tyrosine recombinase XerC [Burkholderia pseudomallei 668] gi|126449297|ref|YP_001082944.1| site-specific tyrosine recombinase XerC [Burkholderia mallei NCTC 10247] gi|167003305|ref|ZP_02269093.1| tyrosine recombinase XerC [Burkholderia mallei PRL-20] gi|167892320|ref|ZP_02479722.1| site-specific tyrosine recombinase XerC [Burkholderia pseudomallei 7894] gi|167900817|ref|ZP_02488022.1| site-specific tyrosine recombinase XerC [Burkholderia pseudomallei NCTC 13177] gi|217424901|ref|ZP_03456397.1| tyrosine recombinase XerC [Burkholderia pseudomallei 576] gi|237810385|ref|YP_002894836.1| tyrosine recombinase XerC [Burkholderia pseudomallei MSHR346] gi|254175248|ref|ZP_04881909.1| tyrosine recombinase XerC [Burkholderia mallei ATCC 10399] gi|254201831|ref|ZP_04908195.1| tyrosine recombinase XerC [Burkholderia mallei FMH] gi|254207161|ref|ZP_04913512.1| tyrosine recombinase XerC [Burkholderia mallei JHU] gi|254359667|ref|ZP_04975938.1| tyrosine recombinase XerC [Burkholderia mallei 2002721280] gi|52427880|gb|AAU48473.1| integrase/recombinase XerC [Burkholderia mallei ATCC 23344] gi|121227678|gb|ABM50196.1| tyrosine recombinase XerC [Burkholderia mallei SAVP1] gi|124291771|gb|ABN01040.1| integrase/recombinase XerC [Burkholderia mallei NCTC 10229] gi|126220812|gb|ABN84318.1| tyrosine recombinase XerC [Burkholderia pseudomallei 668] gi|126242167|gb|ABO05260.1| tyrosine recombinase XerC [Burkholderia mallei NCTC 10247] gi|147747725|gb|EDK54801.1| tyrosine recombinase XerC [Burkholderia mallei FMH] gi|147752703|gb|EDK59769.1| tyrosine recombinase XerC [Burkholderia mallei JHU] gi|148028881|gb|EDK86813.1| tyrosine recombinase XerC [Burkholderia mallei 2002721280] gi|160696293|gb|EDP86263.1| tyrosine recombinase XerC [Burkholderia mallei ATCC 10399] gi|217391921|gb|EEC31947.1| tyrosine recombinase XerC [Burkholderia pseudomallei 576] gi|237506023|gb|ACQ98341.1| tyrosine recombinase XerC [Burkholderia pseudomallei MSHR346] gi|238519856|gb|EEP83322.1| tyrosine recombinase XerC [Burkholderia mallei GB8 horse 4] gi|243061115|gb|EES43301.1| tyrosine recombinase XerC [Burkholderia mallei PRL-20] Length = 310 Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats. Identities = 45/279 (16%), Positives = 93/279 (33%), Gaps = 30/279 (10%) Query: 75 ISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTP 130 I +Y + H L+ ++ ++ D++ R + +T +RS V + Sbjct: 10 IVDYLSNLRHVRKLSDHTLRAYAHELDELKRLANGRPLDSLTAVDMRSAVARAHAGGLSA 69 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 S L++ R ++W + + NP +V PKR + + +D + G+ Sbjct: 70 RSISHRLSAWRAFYRWFSQHVEMNANPVAAVRAPKRAKTLPKALSVDDTAALMDAPTAGT 129 Query: 191 ----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS------------IKTQKTGTIIT 234 + E SGLR ++ ++++++ + K Sbjct: 130 AESLRDHAILELFYSSGLRLAELIGLDIEYVKDGAYRSAGWLDLAEAEVTVRGKGDKERK 189 Query: 235 VEL----PDGFMKLLAM----TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-- 284 V + D LA+ F++ +M+ K A AG+ Sbjct: 190 VPVGRKALDALHAWLAVRGEFVKHDPRPLFLSVRGNRMSPGVVRERVKRAALAAGIPANV 249 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 H +R AT + + G ++ + YT Sbjct: 250 HPHVLRHSFATHVLQSSGDLRAVQELLGHASISATQVYT 288 >gi|302189430|ref|ZP_07266103.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv. syringae 642] Length = 299 Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats. Identities = 37/259 (14%), Positives = 93/259 (35%), Gaps = 19/259 (7%) Query: 85 GSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIR---SGVESRKHTPSSAIQFLT 138 ++ ++ ++ ++ +K+ + + +H+R + + + S + L+ Sbjct: 16 RQVSPHTLEAYRRDLGKVLAYCQKAQLSSWSDLDIQHLRSFTARQHQQGQSSRSLARMLS 75 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRL 194 ++R +K+ R+ +P + PK + + + Q E + + Sbjct: 76 AVRGFYKYLNREGICQHDPANGLSPPKGERRLPKTLDTDRTAQLLDGGVEDDFLAHRDQA 135 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV--------ELPDGFMKLLA 246 E L SGLR S+ + L ++ G+ V + + ++ L A Sbjct: 136 ILELLYSSGLRLSELTGLNLDQLDLRDGLVQVLGKGSKTRVLPVGSKARQALEVWLPLRA 195 Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAK-ATKAGVNKSAHGVRKFSATISADAGATAH 305 +T + F++ +++ + KA + G N H +R A+ ++ Sbjct: 196 LTNPRDDAVFVSQQGKRLGPRAIQVRLKAAGERELGQNLHPHMLRHSFASHLLESSQDLR 255 Query: 306 ELMATYGWKTVDQAETYTK 324 + G + + YT Sbjct: 256 AVQELLGHADIKTTQIYTH 274 >gi|254452706|ref|ZP_05066143.1| phage integrase [Octadecabacter antarcticus 238] gi|198267112|gb|EDY91382.1| phage integrase [Octadecabacter antarcticus 238] Length = 320 Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats. Identities = 44/258 (17%), Positives = 85/258 (32%), Gaps = 19/258 (7%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLF 144 +L S+ S + G T ++ + + S +M + Sbjct: 39 RNLGPASQSSHLRACKRFAAWLGRSPETA-TPDDVKYFQQHLIESGVSICTRNQTMTGV- 96 Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGL 204 K+ +R + + K + +K+++++ + + R+ G+ Sbjct: 97 KFLLRVTLRRHDLVAEIFHLKEPVKVPLVLSKKEIKRILAMAPS-LKARVMLSLAYGCGM 155 Query: 205 RCSDSCRAGVQHLQNN--IFSIKTQKTGTIITVELPDGFMKLLAMT------------PI 250 R + R V + ++ I I K V LP + LL P Sbjct: 156 RAGEVVRLKVGDIDSDQEIIRIVQSKGRKDRIVMLPVDILSLLRDWWKERPTGQDKDVPA 215 Query: 251 GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELM 308 + F + + ++A Q S FK A +AG+ K + H +R AT + G + Sbjct: 216 PERVLFPSYRGKHLSARQISRLFKETAREAGITKPVTLHTLRHSFATHLLERGVDIRVIQ 275 Query: 309 ATYGWKTVDQAETYTKGA 326 A G + Y A Sbjct: 276 ALLGHSKLTTTARYASVA 293 >gi|160915107|ref|ZP_02077320.1| hypothetical protein EUBDOL_01115 [Eubacterium dolichum DSM 3991] gi|158432906|gb|EDP11195.1| hypothetical protein EUBDOL_01115 [Eubacterium dolichum DSM 3991] Length = 311 Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats. Identities = 48/291 (16%), Positives = 98/291 (33%), Gaps = 32/291 (10%) Query: 71 LKWLISEYRKSAHWGSL-AVNSRISFESYFDQIIRKSGDF---DYRKITTKHIRSGVE-- 124 L + +Y A + S+ + Q ++ + I H++ +E Sbjct: 3 LTDVCQDYLHYIQAIDRKAEATIASYTNDLRQYVQYMQTCKIEEVENIDYSHVQDFLEYL 62 Query: 125 ------------SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172 +K + +S +TS+ V ++ +NP ++ K Sbjct: 63 RQDHYDEKGQCIHKKKSSASINHMITSLHVFHRYLSMTYPKLLNPVQNIRTKKAVQHLPV 122 Query: 173 PWTKEDMQQFKSFW---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QK 228 + +D+++ + + E L GLR S+ C +Q + ++ K Sbjct: 123 YFNMQDIERLLDSFRDSDAEIMDKAIVELLYGCGLRVSECCSLMLQQVYLEQGFLRVIGK 182 Query: 229 TGTIITVELPDGFMKLL--AMTPIGKETF------FINNDKQKMNATQFSIWFKAKATKA 280 V + K L +T + K+ + FIN Q++ + K + Sbjct: 183 GNKERMVPMHARCKKALENYLTKVRKQRYARSNFVFINAKGQEITRQYIHVMIKKRLLAL 242 Query: 281 GVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 G++ SAH R A+ D GA + G + + YT ++ Sbjct: 243 GLDERLSAHSFRHSFASHLLDGGADLRVVQELLGHSDISTTQIYTHVQNKR 293 >gi|37527560|ref|NP_930904.1| site-specific tyrosine recombinase XerC [Photorhabdus luminescens subsp. laumondii TTO1] gi|37527568|ref|NP_930912.1| site-specific tyrosine recombinase XerC [Photorhabdus luminescens subsp. laumondii TTO1] gi|36786995|emb|CAE16069.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] gi|36787003|emb|CAE16077.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 376 Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats. Identities = 57/305 (18%), Positives = 103/305 (33%), Gaps = 32/305 (10%) Query: 64 PRKKPTTLKWLISEY---RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITT---K 117 P P +L L+ + R+ W + + +F + G + IT + Sbjct: 24 PAHDPKSLYALLLRFVVWRQERSWSESTLKVQTHHTYHFILWATERGLYYAADITRPILE 83 Query: 118 HIRSGVESRKHT------PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171 + + + T + L ++V FKW +Q + NP +E P+ + Sbjct: 84 RYQRYLYQYRKTNGEPLSTRTQRTQLEPLKVWFKWLTKQNLILANPAADIELPRLEKHLP 143 Query: 172 R-PWTKEDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--FSI 224 R T ++ +Q + G + R E L +G+R + R V + +I Sbjct: 144 RYILTIDETEQILAQPDLTTLQGIRDRALMELLWSTGMRRGELTRLDVYSVDGKRKTVTI 203 Query: 225 KTQKTGTIITVELPDGFMKLLAM-----------TPIGKETFFINNDKQKMNATQFSIWF 273 + K + L + + L P K F + + A S Sbjct: 204 RQGKGNKDRVLPLGERALSWLQRYQQQVRPQLIVNPDVKALFVAMDGLDGLQANGISNLV 263 Query: 274 KAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 A G+ K H R AT + GA + A G +V+ + YT+ + R Sbjct: 264 TAYINAVGIEKKGACHLFRHAMATQMLENGADLRWIQAMLGHASVESTQVYTQVSIRALQ 323 Query: 332 GIKNS 336 + S Sbjct: 324 AVHAS 328 >gi|320527482|ref|ZP_08028663.1| putative site-specific tyrosine recombinase XerC [Solobacterium moorei F0204] gi|320132195|gb|EFW24744.1| putative site-specific tyrosine recombinase XerC [Solobacterium moorei F0204] Length = 307 Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats. Identities = 43/272 (15%), Positives = 89/272 (32%), Gaps = 28/272 (10%) Query: 90 NSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-----TP---SSAIQFLTSMR 141 R E + + + D + +T + + + P SS + L+S++ Sbjct: 27 AYRRDVERFLEYLREHRID-SFEHVTKTDVSDYITQLRDGEIGGKPLSNSSYARNLSSLK 85 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ----QFKSFWSEGSQPRLAFE 197 +++ R E + NP + + + T + M+ QF + R E Sbjct: 86 SFYRYLNRFEGIKANPVRIFKGGSIRRKLPEFLTFDQMETMLNQFDLHDPVQIRNRCIIE 145 Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLA---------- 246 + GLR S+ + + + K V +L+ Sbjct: 146 VMYACGLRVSECAGLKISSINLVEGFLTVLGKESKERMVPFYPRCKQLIQYYMNNARGTF 205 Query: 247 -MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG--VNKSAHGVRKFSATISADAGAT 303 + F+N + + ++A + + A ++ H +R AT D GA Sbjct: 206 MEKTQEHDILFVNQNGRPISARSIQLICEKAGEDANLPIHIHPHMIRHSFATHMLDNGAD 265 Query: 304 AHELMATYGWKTVDQAETYTK-GADRIRLGIK 334 + G + + + YT DR+R + Sbjct: 266 LRIVQELLGHENLGTTQIYTHVTQDRLRKVVD 297 >gi|239826606|ref|YP_002949230.1| site-specific tyrosine recombinase XerC [Geobacillus sp. WCH70] gi|239806899|gb|ACS23964.1| tyrosine recombinase XerC [Geobacillus sp. WCH70] Length = 300 Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats. Identities = 43/272 (15%), Positives = 97/272 (35%), Gaps = 26/272 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKI------TTKHIRSGVESRKHTPSSAIQFLT 138 + + + + ++ +Q + + + + + +K + S + ++ Sbjct: 19 KNYSQYTIVCYQRDVEQFFEFMNEQGIHHLHEVTYNDVRLYLTKLYEQKQSSRSISRKIS 78 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK----SFWSEGSQPRL 194 S+R +K+ +R++ V NP PK++ + ++++++ + G + + Sbjct: 79 SLRSFYKFLLREKKVKENPFALAALPKKEQKIPNFLYEQELEKLFYVNDVNTAIGQRNQA 138 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVE------------LPDGF 241 E L +G+R S+ C + + ++ +I G V + G Sbjct: 139 ILELLYATGVRVSECCHIQLSDIDFSVSTILIHGKGNKQRYVPFGRFAKEALERYIHHGR 198 Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISAD 299 +LL F+N + KA + N S H +R AT + Sbjct: 199 RELLQKAKSAHAYLFVNARGNPLTPRGVRYILDEIVKKAALTQNISPHVLRHTFATHLLN 258 Query: 300 AGATAHELMATYGWKTVDQAETYTK-GADRIR 330 GA + G + + YT DR+R Sbjct: 259 EGADMRTVQELLGHAHLSSTQVYTHVTKDRLR 290 >gi|296502316|ref|YP_003664016.1| site-specific tyrosine recombinase XerD [Bacillus thuringiensis BMB171] gi|296505552|ref|YP_003667252.1| site-specific tyrosine recombinase XerD [Bacillus thuringiensis BMB171] gi|296323368|gb|ADH06296.1| site-specific tyrosine recombinase XerD [Bacillus thuringiensis BMB171] gi|296326604|gb|ADH09532.1| site-specific tyrosine recombinase XerD [Bacillus thuringiensis BMB171] Length = 301 Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats. Identities = 39/293 (13%), Positives = 102/293 (34%), Gaps = 27/293 (9%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFES----YFDQIIRKSGDFDYRKITTKHIRSGVESR 126 L L+ E+ + + + +++ + + D I HI+ V+ + Sbjct: 2 LDNLLKEFIFELKIKNYSDRTVDTYKYNVGLFITYLNEHHEVDDIEDIAPFHIKKFVQHQ 61 Query: 127 ---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 + + S+R FK+ V +EY+ +N ++ K TE I+ +T +++ + Sbjct: 62 IGLGKKANYINTLIKSLRSFFKYLVTEEYMPMNIMSKIQLLKEDTEVIKTFTDDEVVKMI 121 Query: 184 SFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD 239 + ++ ++ + +G+R S+ + + + IK K + Sbjct: 122 DSYDFKTYLNARNKVIMAMFVDTGIRMSELINLQSEWVYDTNIRIK-GKGSKWRFAPISL 180 Query: 240 GFMKLL-----------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA----GVNK 284 K + + + +F++ + + Q K +A + Sbjct: 181 MLKKYMIRYERIKTKYFEKKALEHDNYFLSRAGKPICTVQIENIVKNAGLRADVRKDIRC 240 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 S H +R ++ + G + G + + + Y +G + + + Sbjct: 241 SPHTLRHYAIQANLRNGLDLYSCSKIAGHENIQVTKRYLQGLETENILEMAQK 293 >gi|314923769|gb|EFS87600.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL001PA1] gi|314966217|gb|EFT10316.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL082PA2] gi|315095107|gb|EFT67083.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL060PA1] gi|315104336|gb|EFT76312.1| site-specific tyrosine recombinase XerC [Propionibacterium acnes HL050PA2] gi|327328115|gb|EGE69884.1| putative tyrosine recombinase XerC [Propionibacterium acnes HL103PA1] Length = 300 Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats. Identities = 42/277 (15%), Positives = 93/277 (33%), Gaps = 27/277 (9%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRK---SGDFDYRKITTKHIRSGVESRKHTPS 131 + ++ + N+ + + ++ GD +I +R+ + + + Sbjct: 7 VEDFCDHLLALRRSPNTIRGYRADLIDLMSHAYSHGDDILGRIGISQVRAWLADTRVAGA 66 Query: 132 SAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI---------RPWTKEDM 179 SA + ++ RV F+WA + V+ +P ++ K + Sbjct: 67 SAATMQRRWSAARVFFRWAANEGLVSADPTATLNSVKVPKRLPATLGVDQARHILDEAVA 126 Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELP 238 Q G++ E L GLR + C + + + ++K T K TV + Sbjct: 127 QARHDESPHGARDAAILEVLYGGGLRVGELCGLDLGDVDRSRHTVKVTGKGDKERTVPMG 186 Query: 239 DGFMKLLAMT---------PIGKETFFINNDKQKMNATQFSIWFK--AKATKAGVNKSAH 287 ++ + P + F+ ++++ +A + H Sbjct: 187 APALRAIDTWLPRREEWVGPHSGQALFLGERGRRIDQRVVRRVVHTHLRAEPDSPDLGPH 246 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 G+R AT + GA + G K++ + YT Sbjct: 247 GLRHAMATHLLEGGADLRTVQDMLGHKSLATTQIYTH 283 >gi|116252427|ref|YP_768265.1| integrase/recombinase protein [Rhizobium leguminosarum bv. viciae 3841] gi|116255538|ref|YP_771371.1| putative integrase/recombinase protein [Rhizobium leguminosarum bv. viciae 3841] gi|115257075|emb|CAK08169.1| putative integrase/recombinase protein [Rhizobium leguminosarum bv. viciae 3841] gi|115260186|emb|CAK03290.1| putative integrase/recombinase protein [Rhizobium leguminosarum bv. viciae 3841] Length = 292 Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats. Identities = 43/268 (16%), Positives = 94/268 (35%), Gaps = 23/268 (8%) Query: 74 LISEYRKSAHWGSLAVNSRISFE---SYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130 L + + ++N+++++ S F + KS D R+ + +K P Sbjct: 4 LRQRMSEDMQVRNFSLNTQLAYLQQVSLFARYFSKSPDLLGREDVRIYQVYLANEKKLAP 63 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 SS ++++R L+K + +++V P + PK+ + + +++Q F + Sbjct: 64 SSIHTAISALRFLYKVTLERDWV---PEEVLPLPKKPQKLPIILSPDEVQHFLGCVLDPK 120 Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLLA-- 246 +GLR S++ + + + ++ K V L +++L Sbjct: 121 H-HAILTTCYAAGLRISEAVQLKPTDIDSQRMVVRVEQGKGQKDRYVMLSPKLLEILRDY 179 Query: 247 -MTPIGKETFFINND-KQKMNATQFSIWFKAKATKA------GVNKSAHGVRKFSATISA 298 K F + Q + KA + H +R A Sbjct: 180 WKMRRPKAWLFPGDRAGQPITRDAVG----EACAKAHNLSRLSKPVTPHSLRHAFAVHLL 235 Query: 299 DAGATAHELMATYGWKTVDQAETYTKGA 326 +AGA + G +++ Y + A Sbjct: 236 EAGADVRTIQLLLGHRSLATTAHYLRIA 263 >gi|254975124|ref|ZP_05271596.1| phage integrase family site specific recombinase [Clostridium difficile QCD-66c26] gi|255092513|ref|ZP_05321991.1| phage integrase family site specific recombinase [Clostridium difficile CIP 107932] gi|255306536|ref|ZP_05350707.1| phage integrase family site specific recombinase [Clostridium difficile ATCC 43255] gi|255314251|ref|ZP_05355834.1| phage integrase family site specific recombinase [Clostridium difficile QCD-76w55] gi|255516930|ref|ZP_05384606.1| phage integrase family site specific recombinase [Clostridium difficile QCD-97b34] gi|255650033|ref|ZP_05396935.1| phage integrase family site specific recombinase [Clostridium difficile QCD-37x79] gi|260683181|ref|YP_003214466.1| prophage lambdaba04, site-specific recombinase [Clostridium difficile CD196] gi|260686779|ref|YP_003217912.1| prophage lambdaba04, site-specific recombinase, phage integrase family [Clostridium difficile R20291] gi|306519568|ref|ZP_07405915.1| prophage lambdaba04, site-specific recombinase, phage integrase family protein [Clostridium difficile QCD-32g58] gi|260209344|emb|CBA62764.1| prophage lambdaba04, site-specific recombinase, phage integrase family [Clostridium difficile CD196] gi|260212795|emb|CBE03954.1| prophage lambdaba04, site-specific recombinase, phage integrase family [Clostridium difficile R20291] Length = 376 Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 56/360 (15%), Positives = 126/360 (35%), Gaps = 45/360 (12%) Query: 15 RTRHGKIIYYFRKG--HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72 R R K YYF G G+R ++ +T A + + +L Sbjct: 6 RKRSNKWYYYFDLGIVEGKRKKVERVGGNTKKEAEKALREALNEYENSGIVFEESNISLS 65 Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131 + + K + N++ S+ + I K G + + +T +++ + +K+ Sbjct: 66 DYLDFWYKEYVLLNCKYNTQESYRINIEKHIKPKLGAYKVKALTPAILQNFIN-KKYKED 124 Query: 132 SAIQFLTSMRVLFKWAVRQ-----EYVAINPCLSVERPKRKTE----GIRPWTKEDMQQF 182 + L ++ + +++ +++ NP V PK K++ ++ T E+ Q Sbjct: 125 YSQNTLQVLKAILHRSLKSAVHPYKHIRENPMQYVSIPKTKSKTETNKVKTITLEEFNQI 184 Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ----------------NNIFSIKT 226 + + + S R+ ++G+R + ++ N +F + Sbjct: 185 LNIFPQDSFQRIVLLIGFHTGMRRGEIIALKWDNIDLDNKTITVKHTLIKKPNGMFELGQ 244 Query: 227 QKT-GTIITVELPDGFMKLLA---------MTPIGKETF-----FINNDKQKMNATQFSI 271 KT + T+ D +K L G+ F + Q++N Sbjct: 245 PKTESSCRTIFTGDTLIKALKEHKLYQKKMKLKYGEFYFDSDWVCTKENGQQVNTHTLDT 304 Query: 272 WFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIR 330 + + H +R AT+ + GA ++ G + +TY+ D+++ Sbjct: 305 IVRQIRVALNNDFHFHSLRHAHATLLLENGANIKDIQNRLGHSQLSTTMDTYSHVTDKMK 364 >gi|294776711|ref|ZP_06742176.1| integron integrase [Bacteroides vulgatus PC510] gi|294449455|gb|EFG17990.1| integron integrase [Bacteroides vulgatus PC510] Length = 376 Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 59/297 (19%), Positives = 103/297 (34%), Gaps = 21/297 (7%) Query: 40 ESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF 99 E+TFI SAL + PK+ SP P Y ++ + ++ ++ +YF Sbjct: 70 ETTFID--YSALKNTQPKKSGKTSPAIPPG--------YAETLRQLRYSEHTVRAYTTYF 119 Query: 100 DQIIRKSGDFDYRKITTKHIRSGVESRKHTP--SSAIQFLTSMRVLFKWAVRQEYVAINP 157 + + + R I + I + + T SS Q L + F + Sbjct: 120 KEFQQYFAGRNLRYIRPEEINAYIVHLIDTRGISSCQQNLRINSIKFYFEKVLGLERK-- 177 Query: 158 CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL 217 C V+R KR+ +KE+++ + F L +GLR S+ + Sbjct: 178 CYEVKRAKRERTLPDVLSKEEIKSILDATGPDIRLFCMFSLLYSAGLRISELLDLKPHDI 237 Query: 218 Q--NNIFSIKTQKTGTIITVELPDGFMKLL---AMTPIGKETFFINNDKQKMNATQFSIW 272 ++ ++ K L ++ L A +E F + + S Sbjct: 238 NVSRSLIRVRQGKGRKDRYTLLSKPLVRKLTEYAKLYKPQEWLFERYKGEPFTESIVSKK 297 Query: 273 FKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 K A +AG+ K H +R AT + G + G + E Y AD Sbjct: 298 LKEAAKEAGITKRVYPHLLRHSFATHLIEQGTDLKIVKELLGHNQLKTTEMYVHIAD 354 >gi|168205361|ref|ZP_02631366.1| tyrosine recombinase [Clostridium perfringens E str. JGS1987] gi|170663182|gb|EDT15865.1| tyrosine recombinase [Clostridium perfringens E str. JGS1987] Length = 431 Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 49/285 (17%), Positives = 100/285 (35%), Gaps = 43/285 (15%) Query: 85 GSLAVNSRISFESYFDQI--------------------IRKSGDFDYRKITTKHIRSGV- 123 + N+ ++S + + IR D + IT + + + Sbjct: 133 KGRSPNTVKGYKSNLNLLFKYLVSLKENTPGTDIENVCIRNVDDTFIKNITLMDLYNFLS 192 Query: 124 ---ESRKHTPSSAIQFLTSMRVLFKWA-VRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179 E RK+ S + + +++ F + + + + N L +E PK + T + Sbjct: 193 YVDEVRKNGSYSRARLVAAIKSFFLFLNSKLKIIDENIALELEFPKIEKRLPVYLTLDQA 252 Query: 180 QQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235 + + + + F L G+R S+ C + ++ ++ +I K T+ Sbjct: 253 KAVLNSMDKTKRYYYRDYCIFTLFLNCGMRLSELCGIKISDIRGDLLTII-GKGNKQRTI 311 Query: 236 ELPDGFMKLLA---------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---N 283 L +K + TP + F++ ++++ K AG Sbjct: 312 YLNSECLKSIHDYLNVRGRGNTPEEDKYLFLSRIDKRISNRGVEKLVKKHIENAGFTDKK 371 Query: 284 KSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGAD 327 + H +R +ATI G A L A G +++ E YT D Sbjct: 372 YTPHKLRHSAATILYKYGNADIRSLQAILGHESIATTELYTHVDD 416 >gi|269122520|ref|YP_003310697.1| integrase family protein [Sebaldella termitidis ATCC 33386] gi|268616398|gb|ACZ10766.1| integrase family protein [Sebaldella termitidis ATCC 33386] Length = 344 Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 43/328 (13%), Positives = 108/328 (32%), Gaps = 23/328 (7%) Query: 27 KGHGRRIRLPYPHESTFIPAYM---------SALTGSTPKREYINSPRKKPTTLKWLISE 77 + +R+ Y A+ + + T L + Sbjct: 17 RRKPFAVRITKGWTDEGKRIYKYLSYHITRKEAMQALASYNANPYNVDESNITFGELYEK 76 Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFL 137 + + H+ +L+ N+ +E + + D + I H+++ ++ + Sbjct: 77 W-STRHYKNLSKNTIKGYE-TCSKYCKPIFDMKIKDIKIVHLQNLIDGLNKNHGTLKMMK 134 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP-WTKEDMQQFKSFWSEGSQPRLAF 196 ++ +F +A+ + + + ++ K T + + +++ + Sbjct: 135 NILKQIFGYAMELDIIQKDYSRFLKIGKHVTIKQKSIFNDKEIAVLWKNLDKYQYIDTIL 194 Query: 197 EFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKT--GTIITVELPDGFMKLLA-MTPIG 251 ++Y+G+R + + + ++T KT GT + + +L+ Sbjct: 195 -IMIYTGMRVGEMLNLRKEDINLIEQTIIVRTSKTEAGTNRIIPIHPRIKELIQNRYKNS 253 Query: 252 KETFFIN--NDKQKMNATQFSIW-FKAKATKAGVNKSAHGVRKFSATISADAGATAHELM 308 I ++ ++ + I F + + + H R AT DAG A + Sbjct: 254 NSDHLITGLQNRNSISYVYYDIRLFNPIMDELNIKHTPHDCRHTFATRLNDAGGNATAIK 313 Query: 309 ATYGWKTVDQAET-YT-KGADRIRLGIK 334 G ++ E YT K +R I+ Sbjct: 314 KMIGHESFALTEKVYTHKKVSELRKAIE 341 >gi|227813261|ref|YP_002813270.1| tyrosine recombinase XerC [Bacillus anthracis str. CDC 684] gi|227007518|gb|ACP17261.1| tyrosine recombinase XerC [Bacillus anthracis str. CDC 684] Length = 299 Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 44/272 (16%), Positives = 97/272 (35%), Gaps = 26/272 (9%) Query: 85 GSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIRSGV---ESRKHTPSSAIQFLT 138 + + + S+++ + + + G + IT +R + K S + ++ Sbjct: 18 RNYSKYTIASYQNDLEHFVQFMEREGISSFLDITYADVRLYLTTLHDEKLARKSVARKVS 77 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK----SFWSEGSQPRL 194 S+R L+++ +R+ Y NP PK++ + E++++ + G + + Sbjct: 78 SLRSLYRFLMREGYRKDNPFALASLPKKELSIPKFLYAEELEELFEASDTETPLGQRNQA 137 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE------------LPDGF 241 E + +G+R S+ + + + +I K + + +G Sbjct: 138 LLELMYATGIRVSECVNLQLTDIDFAVGTILVMGKGKKQRYIPFGSYAQDALITYIENGR 197 Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299 +L T F+N + + KA + S H +R AT D Sbjct: 198 KQLAEKTEEQSHMVFLNAKGTPLTSRGVRYVLNELIKKASLTMRISPHILRHTFATHMLD 257 Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRL 331 GA + G + + + YT + RL Sbjct: 258 EGADLRTVQELLGHENLSTTQIYTH-VSKERL 288 >gi|148550339|ref|YP_001270441.1| site-specific tyrosine recombinase XerC [Pseudomonas putida F1] gi|166918895|sp|A5WAU7|XERC_PSEP1 RecName: Full=Tyrosine recombinase xerC gi|148514397|gb|ABQ81257.1| tyrosine recombinase XerC subunit [Pseudomonas putida F1] Length = 299 Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 35/259 (13%), Positives = 89/259 (34%), Gaps = 19/259 (7%) Query: 85 GSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFLT 138 ++ ++ + + +++ ++ G +++ + + +R + +P S + L+ Sbjct: 16 RQVSEHTLLGYRRDLEKVIAYCKEHGIAEWQALQIQQLRQLIARLHHHGQSPRSLARLLS 75 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW-TKEDMQQFKSFWS---EGSQPRL 194 ++R L+++ R+ +P + PK + + T +Q + + Sbjct: 76 AVRGLYRYLNREGLCQHDPATGLSAPKGERRLPKVLDTDRALQLLDGGVDDDFIARRDQA 135 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPI--- 250 E SGLR S+ + HL ++ K G + + + L Sbjct: 136 ILELFYSSGLRLSELTNLDLDHLDLAAGLVQVLGKGGKARVLPVGRKAREALQAWYRLRG 195 Query: 251 ----GKETFFINNDKQKMNATQFSIWFKAK-ATKAGVNKSAHGVRKFSATISADAGATAH 305 FI +++ + KA + G + H +R A+ ++ Sbjct: 196 IGNPRDRAVFITRQGNRISPQAVRLRVKAAGERELGQHLHPHMLRHSFASHVLESSQDLR 255 Query: 306 ELMATYGWKTVDQAETYTK 324 + G + + YT Sbjct: 256 AVQEMLGHADISTTQIYTH 274 >gi|330870011|gb|EGH04720.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330892013|gb|EGH24674.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv. mori str. 301020] Length = 290 Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 37/259 (14%), Positives = 93/259 (35%), Gaps = 19/259 (7%) Query: 85 GSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIR---SGVESRKHTPSSAIQFLT 138 ++ ++ ++ ++ +K+ + + +H+R + + + S + L+ Sbjct: 7 RQVSPHTLEAYRRDLGKVLAYCQKAQLSSWNDLDIQHLRSFTARQHQQGQSSRSLARMLS 66 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRL 194 ++R +K+ R+ +P + PK + + + Q E + + Sbjct: 67 AVRGFYKYLNREGICQHDPANGLSPPKGERRLPKTLDTDRTAQLLDGGVEDDFLAHRDQA 126 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV--------ELPDGFMKLLA 246 E L SGLR S+ + L ++ G+ V + + ++ L A Sbjct: 127 ILELLYSSGLRLSELTGLNLDQLDLRDGLVQVLGKGSKTRVLPVGSKARQALEIWLPLRA 186 Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAK-ATKAGVNKSAHGVRKFSATISADAGATAH 305 +T + F++ +++ + KA + G N H +R A+ ++ Sbjct: 187 LTNPQDDAVFVSQQGKRLGPRTIQVRLKAAGERELGQNLHPHMLRHSFASHLLESSQDLR 246 Query: 306 ELMATYGWKTVDQAETYTK 324 + G + + YT Sbjct: 247 AVQELLGHADIKTTQIYTH 265 >gi|312126544|ref|YP_003991418.1| integrase family protein [Caldicellulosiruptor hydrothermalis 108] gi|311776563|gb|ADQ06049.1| integrase family protein [Caldicellulosiruptor hydrothermalis 108] Length = 373 Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 44/303 (14%), Positives = 100/303 (33%), Gaps = 39/303 (12%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSG----VE 124 T L+ + + +++++ S+ S I G+++ K+T ++ + Sbjct: 62 TFGELLDLWLNTVAKNRVSLSTFQSYSSSIALHIKPFLGEYELGKLTPMDLQKYYQHVMT 121 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 + + + A+ + +AV+ + + NP V+ PK++ W +E +++ Sbjct: 122 EKGLSSTLALYHHRIIHQALDYAVKMDMLEKNPADYVDPPKKRNYQPSIWDEETIKKALE 181 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT--------------- 229 + G+ R+ +Y+G+R + + + I KT Sbjct: 182 IFK-GTNIRIPVLLAIYTGMRIGEIAALKWEDINLEQGYITVNKTFMKINGQTYIKEKAE 240 Query: 230 --GTIITVELPDGFMKLLAMTPIG-------------KETFFIN-NDKQKMNATQFSIWF 273 + V + + + L E F D + + + F Sbjct: 241 NKNSYRIVAISNQVVSELKEWKAKQEKLKEELKELYHDEGFVCTFEDGRVQDPKYITKVF 300 Query: 274 KAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRL 331 + K + K H +R A+I G + G T+ Y+ D R Sbjct: 301 QKTIEKHKLPKIRFHDLRHTHASILLKHGVDPKHISDRLGHSTITTTLNIYSHVFDEKRK 360 Query: 332 GIK 334 + Sbjct: 361 KVA 363 >gi|212633304|ref|YP_002309829.1| Phage integrase:Phage integrase,SAM-like protein [Shewanella piezotolerans WP3] gi|212554788|gb|ACJ27242.1| Phage integrase:Phage integrase,SAM-like protein [Shewanella piezotolerans WP3] Length = 304 Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 38/276 (13%), Positives = 94/276 (34%), Gaps = 21/276 (7%) Query: 67 KPTTLKWLIS--EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD----YRKITTKHIR 120 T WLI Y + ++ + ++ ++ D + + + I Sbjct: 6 SSGTSPWLIDFERYLTTER--QVSAYTVRNYLFELKRVEAVFAANDDWLELKHESLQAII 63 Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR---PWTKE 177 + + + +P S L+S++ F + +R++ +++NP L++ PK+ + + Sbjct: 64 AKLHRKGLSPRSLSLTLSSIKQFFDFLLREQQISVNPALNLSAPKQAKPLPKNMDVDSVT 123 Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-IITVE 236 + + + + + E SGLR ++ V ++ + +K G+ V Sbjct: 124 HLLEIDANDPLSYRDKAIMELFYSSGLRLAELAALNVTDIKFSQAQVKVMGKGSKERIVP 183 Query: 237 LPDGFMKLL-------AMTPIGKETFFINNDKQKMNATQFSIWFKAK--ATKAGVNKSAH 287 + + + P + F+ +++ V H Sbjct: 184 IGKLALTAISQWLDIKRDIPCEDDALFVTAKGRRLAHRSIQARLAKWGQEQALSVKVHPH 243 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 +R AT ++ A + G + + YT Sbjct: 244 KLRHSFATHMLESSADLRAVQELLGHANLSTTQVYT 279 >gi|188997103|ref|YP_001931354.1| integrase family protein [Sulfurihydrogenibium sp. YO3AOP1] gi|188932170|gb|ACD66800.1| integrase family protein [Sulfurihydrogenibium sp. YO3AOP1] Length = 297 Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 49/285 (17%), Positives = 98/285 (34%), Gaps = 28/285 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK---HTPSSAIQFLTSMR 141 + N+ ++ F+Q I+ GD + +IT I + + S+ + L S+ Sbjct: 15 ADKSPNTVKNYRVDFNQFIKIVGDKNINEITKADIAKFRMTLQMQNRKSSTIARKLASIN 74 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY 201 LF++ + E V+ +P RPK + + E++++ Q + L Sbjct: 75 SLFQYLMDLELVSSSPITKSHRPKVSQKIPSALSNEEVKKLIDALDS-IQDKAIVVLFLT 133 Query: 202 SGLRCSDSCRAGVQHL--------------------QNNIFSIKT-QKTGTIITVELP-D 239 +GLR S+ ++ + +I I+ K V + Sbjct: 134 TGLRSSELLSIKKSNIIVERNGQTFSIDRLIEGEVKEGDIAYIRVVGKGDKEREVPITGK 193 Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISAD 299 L+ E N ++ K K + H +R +AT++ Sbjct: 194 PLEILVQYLKSINEFLDDNEYIFPISYHLLWRKIKNIGKKLAITLHPHKLRHTAATMALS 253 Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344 +GA + G + Y K + L K ++ +S +D Sbjct: 254 SGAELRVIQELLGHASPVTTARYAKVGQKQLL--KATKALSENID 296 >gi|325300266|ref|YP_004260183.1| integrase family protein [Bacteroides salanitronis DSM 18170] gi|324319819|gb|ADY37710.1| integrase family protein [Bacteroides salanitronis DSM 18170] Length = 368 Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 33/263 (12%), Positives = 88/263 (33%), Gaps = 19/263 (7%) Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHTPSSA 133 Y + + ++ ++ +YF + + ++ I + +K + S Sbjct: 96 YLELLEQKRYSPSTIKTYRAYFSDFVEYHKGRNIDRLKVADINRYILYLVNEKKISVSQQ 155 Query: 134 IQFLTSMRVLFKWAV--RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191 + +++ ++ +++Y + R K +K ++++ S + Sbjct: 156 NMRINAIKFYYEQVKGGKRQYYG-----GITRAKEYKTVPEVLSKNEIKRILDQLS-NIK 209 Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-----ITVELPDGFMKLLA 246 + +GLR S+ + + + + S++ G ++ +L + + Sbjct: 210 HHCMISLVYSAGLRRSELLNLTPKDINSEMMSVRIMGKGKKCRYSLLSPKLLEELRRYFR 269 Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHG--VRKFSATISADAGATA 304 K F + +A+ K A +AG+ H +R AT + G Sbjct: 270 EYRPKKWLFEGETPGEPYSASALVKVLKEAAQRAGIKHRVHVHMLRHSFATHLLEQGTDL 329 Query: 305 HELMATYGWKTVDQAETYTKGAD 327 H + G + Y ++ Sbjct: 330 HTIQELLGHNDIKTTAIYLHTSN 352 >gi|257482612|ref|ZP_05636653.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 290 Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 37/259 (14%), Positives = 92/259 (35%), Gaps = 19/259 (7%) Query: 85 GSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIR---SGVESRKHTPSSAIQFLT 138 ++ ++ ++ ++ +K+ + + +H+R + + + S + L+ Sbjct: 7 RQVSPHTLEAYRRDLGKVLAYCQKAQLSSWNDLDIQHLRSFTARQHQQGQSSRSLARMLS 66 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRL 194 ++R +K+ R+ +P + PK + + Q E + + Sbjct: 67 AVRGFYKYLNREGICQHDPANGLSPPKGDRRLPKTLDTDRTAQLLDGGVEDDFLAHRDQA 126 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV--------ELPDGFMKLLA 246 E L SGLR S+ + L ++ G+ V + + ++ L A Sbjct: 127 ILELLYSSGLRLSELTGLNLDQLDLRDGLVQVLGKGSKTRVLPVGSKARQALEIWLPLRA 186 Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAK-ATKAGVNKSAHGVRKFSATISADAGATAH 305 +T + F++ +++ + KA + G N H +R A+ ++ Sbjct: 187 LTNPQDDAVFVSQQGKRLGPRTIQVRLKAAGERELGQNLHPHMLRHSFASHLLESSQDLR 246 Query: 306 ELMATYGWKTVDQAETYTK 324 + G + + YT Sbjct: 247 AVQELLGHADIKTTQIYTH 265 >gi|167752437|ref|ZP_02424564.1| hypothetical protein ALIPUT_00681 [Alistipes putredinis DSM 17216] gi|167660678|gb|EDS04808.1| hypothetical protein ALIPUT_00681 [Alistipes putredinis DSM 17216] Length = 309 Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 45/277 (16%), Positives = 94/277 (33%), Gaps = 31/277 (11%) Query: 77 EYRKSAHWGSLAVNSRISFES----YFDQIIRKSGDFDYRKITTKHIRSGVESRKHT--- 129 +Y + + + ++ + + + DFD R+IT + +R + R T Sbjct: 7 QYLATVR--RFSPLTVQNYRRDVTNFLEWLDVPEADFDPRRITVEDVREWIVHRTETKHL 64 Query: 130 -PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 +S + L+S+R F++ R + + K M+ Sbjct: 65 GAASMNRELSSLRSFFRYLHRTGRIDKEVMYRIHALKTSRRIPAFVPSTRMEGILDELDR 124 Query: 189 GS--------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--TIITVELP 238 S + L GLR ++ + ++K + G I LP Sbjct: 125 ESESPEFKFVRNSLIVLLFYSCGLRLAELVGIDRDDFSGDYTALKVRGKGDKERIVPILP 184 Query: 239 DGFMKLLA---------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAH 287 K+L + ++ F+N ++++ + +++ + GV KS H Sbjct: 185 PVREKILHYLDEIDRQGICISKEKALFLNQQGKRISRSTVYRTVQSQLRQGGVQGKKSPH 244 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 +R AT + GA + G ++ + YT Sbjct: 245 VLRHTFATELLNNGADMRAIQELLGHASLQATQVYTH 281 >gi|256420742|ref|YP_003121395.1| integrase family protein [Chitinophaga pinensis DSM 2588] gi|256035650|gb|ACU59194.1| integrase family protein [Chitinophaga pinensis DSM 2588] Length = 314 Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 47/268 (17%), Positives = 94/268 (35%), Gaps = 33/268 (12%) Query: 90 NSRISFESYFDQIIRKSGDFDYRKITTKHIR---SGVESRKHTPSSAIQFLTSMRVLFKW 146 + +F + + GD + I+ H+R + + S + +++++ FK+ Sbjct: 29 AYQQDLTQFFIFLRSQYGDVSLQGISHLHVRTWLAWLMEEGIVAKSVNRKISTLKSFFKY 88 Query: 147 AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS---------------EGSQ 191 A+R V +P V PK ++ M+ + S EG Sbjct: 89 AMRHGVVVTSPMTKVTAPKTGKRLPGFIDEKGMEAVEDNRSMRRGQEGRPIFADDLEGKT 148 Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPI 250 RL FE L ++G+R S+ +H+ + ++K K + + + + Sbjct: 149 HRLIFELLYHTGIRLSELIGLQERHVDISNLTLKVLGKGNKERIIPISKNLRDEIKGYRV 208 Query: 251 ---------GKETFFIN-NDKQKMNATQFSIWFKAKATKAGVN----KSAHGVRKFSATI 296 KE +N +K+ K T + +S H +R AT Sbjct: 209 MRDKALEMPDKEVLLVNPRSGKKLYPRYVYNVVKGYLTDHEITTISRRSPHILRHTFATH 268 Query: 297 SADAGATAHELMATYGWKTVDQAETYTK 324 + GA + + G ++ + YT Sbjct: 269 LTNNGADLNAVKELLGHASLASTQVYTH 296 >gi|325125940|gb|ADY85270.1| Tyrosine recombinase xerC [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 295 Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 40/264 (15%), Positives = 102/264 (38%), Gaps = 24/264 (9%) Query: 85 GSLAVNSRISFESYF---DQIIRKSGDFD-YRKITTKHIRSGVES--RKHTPSSAIQFLT 138 S + + ++++ + +++G F + +I+ + + + + +K S+ + L+ Sbjct: 15 RSYSPKTVLAYQKDLAATKKFWQENGGFPGWDQISRRDLEIYLLATGQKLASSTLSRKLS 74 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG----SQPRL 194 S++ +++ R+ V +P ++++ + K + + ++++ Q ++G + R Sbjct: 75 SLKSFYRFLTRRGLVKADPTVAIQLRRGKKKLPEFFYQDEVGQVIRSLNDGKPLTVRNRA 134 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLL-----AMT 248 +G+R S+ ++ L N + K V K L A Sbjct: 135 IVALFYATGMRLSELTDLKIKQLDLENGMILVHGKGNKDRYVFFDQESKKYLEEYLQAAR 194 Query: 249 P------IGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADA 300 P F+N + +++ + + KAG+ H +R AT + Sbjct: 195 PSLLKNEPDTGAVFLNKLGRPISSRGIAKAVQQIFQKAGLTAGAHPHELRHSFATAMLNN 254 Query: 301 GATAHELMATYGWKTVDQAETYTK 324 GA + G + + + YT Sbjct: 255 GADLRSVQELLGHEDLSTTQIYTH 278 >gi|20807762|ref|NP_622933.1| integrase [Thermoanaerobacter tengcongensis MB4] gi|34222924|sp|Q8RAB1|XERDL_THETN RecName: Full=Tyrosine recombinase xerD-like protein gi|20516317|gb|AAM24537.1| Integrase [Thermoanaerobacter tengcongensis MB4] Length = 290 Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 38/248 (15%), Positives = 91/248 (36%), Gaps = 19/248 (7%) Query: 85 GSLAVNSRISFESYFDQIIRKSGD-----FDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139 L+ N+ S+ +Q + + +K T + ++ + + ++ + L+S Sbjct: 17 KRLSKNTLESYSRDVEQFLTYMNEHGINFCSAKKSTIVNYLYFLKQQGKSQATISRALSS 76 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195 ++ + + ++ + +P + PK + + T E + SF +G + + Sbjct: 77 IKAFYHYLFAKKKIEEDPSYGINAPKVEKKEPVTLTVEQVDMLLSFDFGKDEKGLRDKAL 136 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA------MTP 249 E + SGL+ S+ ++ + I + +G + + + L P Sbjct: 137 IELMYASGLKVSEVISLKIEDVNLASGYIVVR-SGKERVIPIGSYAVAALQEYIEKGRKP 195 Query: 250 IGKE-TFFINNDKQKMNATQFSIWFKAKATKA--GVNKSAHGVRKFSATISADAGATAHE 306 E F+N +++ K A K G+ + + +RK A GA Sbjct: 196 RKGEKALFLNLRGKRLTRQGCWKIIKEYADKISPGLPLTPNILRKSFAQHMLQNGADLKT 255 Query: 307 LMATYGWK 314 + G++ Sbjct: 256 VQEMLGYE 263 >gi|307545892|ref|YP_003898371.1| site-specific recombinase, phage integrase family [Halomonas elongata DSM 2581] gi|307217916|emb|CBV43186.1| site-specific recombinase, phage integrase family [Halomonas elongata DSM 2581] Length = 352 Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 48/290 (16%), Positives = 105/290 (36%), Gaps = 27/290 (9%) Query: 60 YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119 YI + TL+ + Y + +++ S + +I G + +T + I Sbjct: 50 YIQRSASERMTLEAALKRYLADVT-PTKKPSTQKSERHKANTLIEHLGKYSLAALTPELI 108 Query: 120 RSGVESR------KHTPSSAIQF---LTSMRVLFKWAVRQEY---VAINPCLSVERPKRK 167 + ++R + P SA L + L+ A+ QE+ + NP ++ +P Sbjct: 109 ANFRDTRLNSLGRRGQPISANTVRLELALLGHLYTVAI-QEWGLGLTYNPVQNIRKPSPG 167 Query: 168 TEGIRPWTKEDMQQFKSFWSEGSQPRLAFE--FLLYSGLRCSDSCRAGVQ--HLQNNIFS 223 R + ++ ++ + + S P LA+ L +G+R S+ ++ + Sbjct: 168 EGRDRRLSADEEKRLFAVLRQHSNPMLAWIARIALETGMRSSEILTLTRSQVDVKRRVVR 227 Query: 224 IKTQKTGTIITVELPDGFMKLLAMT------PIGKETFFINNDKQ--KMNATQFSIWFKA 275 + K V L ++ P + F + K ++ + Sbjct: 228 LTDTKNNEARLVPLTQAATEVFKQALNNPVRPFDCDLVFFGEPGKDGKRGPYAYTKLWNQ 287 Query: 276 KATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 +AG++ H +R + + +AG + E+ G K++ YT Sbjct: 288 AKKQAGLDDFRFHDLRHEAVSRLVEAGLSDQEVATISGHKSMQMLRRYTH 337 >gi|323524461|ref|YP_004226614.1| tyrosine recombinase XerC [Burkholderia sp. CCGE1001] gi|323381463|gb|ADX53554.1| tyrosine recombinase XerC [Burkholderia sp. CCGE1001] Length = 307 Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 48/290 (16%), Positives = 92/290 (31%), Gaps = 31/290 (10%) Query: 73 WLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KH 128 I+ Y + H L+ ++ + D++ + + +T IR V Sbjct: 5 DFIAAYLSNLEHERRLSAHTLRGYAHELDELRLLTKGRPLQSLTAVDIRGAVARAHAGGL 64 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS- 187 T S L++ R ++W + + NP +V PK+ + + +D + Sbjct: 65 TARSISHRLSAWRAFYRWLAGRVDLPANPVATVRAPKQAKALPKALSVDDANRLMESPPA 124 Query: 188 ---EGSQPRLAFEFLLYSGLRCSDSCRAGVQ------HLQNNIFSI------KTQKTGTI 232 EG + E SGLR S+ V+ H + K Sbjct: 125 ASAEGLRDHAMLELFYSSGLRLSELVGLDVRFADVDGHRSAGWLKLDSAEVEVLGKGNQR 184 Query: 233 ITVELPDGFMKLLAMTPIGKE--------TFFINNDKQKMNATQFSIWFKAKATKAGVNK 284 V + ++ L ++ F++ +++ K A AG+ Sbjct: 185 RIVPVGSKALEALNAWLAVRDEMVKHDPHPLFLSARGNRLSPNVVRERVKRAALVAGIPA 244 Query: 285 --SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 H +R AT + + G ++ + YT G D L Sbjct: 245 NVHPHVLRHSFATHVLQSSGDLRAVQELLGHASITATQVYT-GLDFQHLA 293 >gi|28378506|ref|NP_785398.1| integrase/recombinase [Lactobacillus plantarum WCFS1] gi|254556720|ref|YP_003063137.1| integrase/recombinase [Lactobacillus plantarum JDM1] gi|300767452|ref|ZP_07077364.1| tyrosine recombinase XerC [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308180663|ref|YP_003924791.1| integrase/recombinase [Lactobacillus plantarum subsp. plantarum ST-III] gi|28271342|emb|CAD64247.1| integrase/recombinase [Lactobacillus plantarum WCFS1] gi|254045647|gb|ACT62440.1| integrase/recombinase [Lactobacillus plantarum JDM1] gi|300495271|gb|EFK30427.1| tyrosine recombinase XerC [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308046154|gb|ADN98697.1| integrase/recombinase [Lactobacillus plantarum subsp. plantarum ST-III] Length = 314 Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 42/262 (16%), Positives = 93/262 (35%), Gaps = 27/262 (10%) Query: 88 AVNSRISFESYFDQIIRKSGDFDYRKITTKH---IRSGVESRKHTPSSAIQFLTSMRVLF 144 A R +++ D + G Y ++ S + R T +S + ++S+R + Sbjct: 24 AAAYREDIQAFNDFLTANGGAKAYTEVDRLDVNVYLSHLYDRHLTRNSIARKVSSLRSFY 83 Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ-QFKSFWSE----GSQPRLAFEFL 199 + V+ + +NP + V+ K R + ++++ F++ +++ G++ E L Sbjct: 84 NFLVKNDLAKLNPFVYVQLKKHAARLPRFFYQKELDVLFQTVYADDSVMGARNAALLEVL 143 Query: 200 LYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLL------AMTPI-- 250 +G+R S+ + + + + K V L P+ Sbjct: 144 YGTGIRLSECVDLQLADVDYDLKMMLIRGKGDKERYVPFGRYAATALQHYETVCRQPVMA 203 Query: 251 ----GKETFFINNDKQKMNATQ----FSIWFKAKATKAGVNKSAHGVRKFSATISADAGA 302 +T FIN + + K + A ++ H +R AT + GA Sbjct: 204 KYGQTHQTVFINRHGGPITGGGIEYVLNQIVKKSSLTADIH--PHMLRHTFATQMLNNGA 261 Query: 303 TAHELMATYGWKTVDQAETYTK 324 + G ++ + Y Sbjct: 262 DLRTVQELLGHTSLSTTQIYAH 283 >gi|298373089|ref|ZP_06983079.1| tyrosine recombinase XerD [Bacteroidetes oral taxon 274 str. F0058] gi|298275993|gb|EFI17544.1| tyrosine recombinase XerD [Bacteroidetes oral taxon 274 str. F0058] Length = 294 Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 42/277 (15%), Positives = 91/277 (32%), Gaps = 27/277 (9%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQI----IRKSGDFDYRKITTKHIRSGVESR-- 126 ++ EY + + + + + S+ +Q R + D K IR + Sbjct: 1 MLEEYLRYLQYEKNYSSRTVSSYRKDINQFTAYYSRINNSTDISKAEIDDIRLWIAELIS 60 Query: 127 --KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 K T S + L+SM+ +K+ +++ + +P V PK +T++D+ + Sbjct: 61 VNKITSRSVCRKLSSMKSFYKFLLQKNIIDSSPVDVV-APKIIKSLPVFFTEKDINLLGT 119 Query: 185 FWSEG------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVEL 237 ++ L E +G+R + + + +IK K V Sbjct: 120 DEILPDDSFETARNALMIEIFYQTGIRRMELIELKISDIDFERKTIKVLGKRRKERFVPF 179 Query: 238 PDGFMKLLA--------MTPIGKETFFINNDKQKMNATQFSIWFKAK--ATKAGVNKSAH 287 + + + F+ +++ + + S H Sbjct: 180 GEALENQIKHYLSIRQKRITTDNDYLFVTKHGRQLYDKAVYNIVTRELGSITTKTKHSPH 239 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 +R AT D GA + + G ++ + YT Sbjct: 240 TLRHTFATTMLDNGADLNSIKELLGHSSLAATQVYTH 276 >gi|298346742|ref|YP_003719429.1| integrase/recombinase XerD family protein [Mobiluncus curtisii ATCC 43063] gi|298236803|gb|ADI67935.1| integrase/recombinase XerD family protein [Mobiluncus curtisii ATCC 43063] Length = 309 Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 53/285 (18%), Positives = 92/285 (32%), Gaps = 31/285 (10%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD------FDYRKITTKHIRSGVE 124 L +L+ E S H + Y +I + + + + +G Sbjct: 12 LDYLVVERGASPHTVA---AYTRDLRRYITFLIANGVNSLDEVTLPLLESFARALEAGFG 68 Query: 125 SRKH-TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 PSSA + + S+R ++A V NP + K T E++Q Sbjct: 69 DYAAVAPSSARRAIASVRSWHRYAYETGAVRANPTKGIAPAKVGAHLPTVLTVEEVQTLL 128 Query: 184 SFWSEG-----SQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVE 236 S + R EFL +G R S++ V + I ++ G + Sbjct: 129 EAASAPGDDNALRDRALLEFLYATGARISEAVNLAVDDINLDEEIPLVRLFGKGRKERLS 188 Query: 237 LPDGFMKL------------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA--GV 282 + K LA + F+N + ++ +A A +A V Sbjct: 189 MLGHLAKDALEAYLVRVRPRLAEKGRSQGRVFLNTLGRPLSRQSAWAIIQAAAQRAQITV 248 Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 H +R AT GA + G +V + YTK ++ Sbjct: 249 PVGPHTLRHCFATHLLQGGADVRAVQELLGHASVTTTQIYTKVSN 293 >gi|163787862|ref|ZP_02182309.1| integrase [Flavobacteriales bacterium ALC-1] gi|159877750|gb|EDP71807.1| integrase [Flavobacteriales bacterium ALC-1] Length = 296 Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 43/259 (16%), Positives = 91/259 (35%), Gaps = 24/259 (9%) Query: 88 AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFLTSMRVLF 144 A+ E + D + K+ IR + + + + ++S+ F Sbjct: 21 ALAYIRDIEMFQDFLEEHHDSEVLSKVGYSEIREWIVKLVNSGISNRTVNRKISSLNTYF 80 Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ-----FKSFWSEGSQPRLAFEFL 199 K+ ++ + + INP + K + P+++E+++ + E ++ L E Sbjct: 81 KFLIKTQTIKINPLKQHKALKVGKKVQLPFSEEELKAVLENSIEVHDFESARNHLIIELF 140 Query: 200 LYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAM---------TP 249 +G+R + + + +K K + L D + + T Sbjct: 141 YATGIRRIELVEITINDIDFGNKQLKVLGKRNKERYIPLIDSLIISIKNYLKYRSQLETI 200 Query: 250 IGKETFFINNDKQK----MNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAH 305 KE F+ K + + +F +TKA S H +R AT + GA + Sbjct: 201 NDKEVLFLTKKGLKIYEMLVYRIINKYFSEASTKA--KCSPHVLRHSFATHLLNQGADLN 258 Query: 306 ELMATYGWKTVDQAETYTK 324 + G ++ + YT Sbjct: 259 AVKELLGHTSLAATQVYTH 277 >gi|126665716|ref|ZP_01736697.1| hypothetical protein MELB17_04087 [Marinobacter sp. ELB17] gi|126629650|gb|EBA00267.1| hypothetical protein MELB17_04087 [Marinobacter sp. ELB17] Length = 361 Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 55/323 (17%), Positives = 102/323 (31%), Gaps = 33/323 (10%) Query: 32 RIRLPYPHESTFI---PAYMSALTGSTPKRE--YINSPRKKPTTLKWLISEYRKSAHWGS 86 R++ +TF A A+ RE Y S K TL I Y + + Sbjct: 21 RLKGRNTESATFDRLTDAKRWAIQTEAAIREGRYFQSAAGKGKTLADAIDRYARD-TLPA 79 Query: 87 LAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP------------SSAI 134 L + R + + G + I+ I + K TP +S Sbjct: 80 LKDSDRRL--AQLQWWRFQIGAVPIKDISASMIAKYRDELKSTPFKTGKTEKQRTDASTN 137 Query: 135 QFLTSMR-VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP- 192 ++L ++ V+ A E++A NPC V+R K R ++ ++ + ++ Sbjct: 138 RYLAALSPVMAAAADEWEWIADNPCRKVKRGKEAKGRTRFLFDDERKRLLEACDKATETP 197 Query: 193 --RLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMT 248 ++ + +G R S+ + + + K G L + + Sbjct: 198 ELKIIVLLGITTGARRSELSGLTWRDVDFKRQSVTFHDTKNGETRAAPLVGPALHAMTEW 257 Query: 249 P-----IGKETFF--INNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAG 301 F + W A + H +R +A+ A G Sbjct: 258 AKVRPLNDSSHVFSGRTEKTKNKPLDFQRAWMTALKRAEVKDFRFHDLRHTAASYLAMNG 317 Query: 302 ATAHELMATYGWKTVDQAETYTK 324 A E+ G KT+ + Y+ Sbjct: 318 AGLREIAEILGHKTLAMVQRYSH 340 >gi|227539179|ref|ZP_03969228.1| integrase/recombinase [Sphingobacterium spiritivorum ATCC 33300] gi|227240861|gb|EEI90876.1| integrase/recombinase [Sphingobacterium spiritivorum ATCC 33300] Length = 357 Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats. Identities = 42/251 (16%), Positives = 84/251 (33%), Gaps = 10/251 (3%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLF 144 + + N+ ++ F Q++ D + +R+ + +T + L S Sbjct: 95 KAYSPNTIKTYMVEFAQLLYVVKDVPVDSLGYDRLRAYILYCINTLKISESQLHSRLNAI 154 Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGL 204 K+ Q + + RPKR++ + +++++++ + + L + GL Sbjct: 155 KFYFEQVLHKPDFFAEIPRPKRRSTLPKVLSQKEVKRIFNTV-RNRKHLLMLQLCYGMGL 213 Query: 205 RCSDSCRAGVQHLQNNIFS--IKTQKTGTIITVELP----DGFMKLLAMTPIGKETFFIN 258 R S+ V + + I+ K V LP D + K F Sbjct: 214 RVSEVVNLKVSDIDSGRMQVLIEAGKGKKDRYVPLPTAVLDLLREYYKAY-RPKTYLFEG 272 Query: 259 NDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTV 316 + + FK A VN+ HG+R AT + G + G + Sbjct: 273 QYGGRYSVRSVQAVFKNAMKAAKVNRPIGIHGLRHSYATHLLEYGTDISFIQQLLGHNDI 332 Query: 317 DQAETYTKGAD 327 Y K + Sbjct: 333 KTTMLYAKVGN 343 >gi|289627096|ref|ZP_06460050.1| phage integrase family protein [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|330868191|gb|EGH02900.1| phage integrase family protein [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 404 Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats. Identities = 56/308 (18%), Positives = 106/308 (34%), Gaps = 29/308 (9%) Query: 44 IPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-I 102 + A + + T+ L ++ + +++ +++ D+ I Sbjct: 73 LAQEWLAQVRLGGDPSADKAIARSAPTVADLCKKFMEDHSKQRNKPSTQRGYQAVIDRCI 132 Query: 103 IRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVA--INPCLS 160 + G + + + S ++ H P+ A + + MR +F A Y + NPC Sbjct: 133 VPMLGRMKVQDVKRPDVASAMKKMVHKPAEANRTFSVMRKMFNLAEVWGYRSDGTNPCRH 192 Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWS-------------EGSQPRLAFEFLLYSGLRCS 207 V + + E+M + + + RL FEF R S Sbjct: 193 VPM-YPNGKATHLISDEEMGKLFRYLAFLETDGLGQDHAILPLAIRLQFEFA----GRRS 247 Query: 208 DSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFI----NNDK 261 + + N KTG ++ L + +LL+ P ++ N+ Sbjct: 248 EIVALQWDWVDLENRRVVWPDSKTG-CMSKPLSEEGHRLLSTAPRKDGCPYVFPSPNHPG 306 Query: 262 QKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320 + M ++ + +AGV HG+R SAT A++G MA KTV Sbjct: 307 KHMTTGEYYGGWTRILKRAGVTHVGTHGIRHRSATDIANSGIPVKVGMALTAHKTVAMFM 366 Query: 321 TYTKGADR 328 Y D+ Sbjct: 367 RYVHTEDK 374 >gi|228910970|ref|ZP_04074778.1| Site-specific recombinase, phage integrase [Bacillus thuringiensis IBL 200] gi|228848625|gb|EEM93471.1| Site-specific recombinase, phage integrase [Bacillus thuringiensis IBL 200] Length = 322 Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats. Identities = 45/284 (15%), Positives = 93/284 (32%), Gaps = 28/284 (9%) Query: 86 SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES---RKHTPSSAIQFLTSMRV 142 + + F +R+ IT KH++ + R+ P++ +++++ Sbjct: 41 GFRKRTIDDYTKLFRYFMRELNIDKVEIITAKHVQMYINKLISRELAPATVNIRISALKS 100 Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK----SFWSEGSQPRLAFEF 198 +FK Q Y+ NP + + + I +++ G + A Sbjct: 101 VFKRLHEQGYIKSNPAVDFVKLRTDEAPIFTLNNNQIKRLFCVVDKTTYAGYRDYCAMLL 160 Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSIKTQ----KTGTIITVELPDGFMKLLAMTPIGKET 254 +L+ GLR ++ + L + +I K V + + L M Sbjct: 161 MLHCGLRVNEVNQLEANDLDFDNLTIMLSGAKNKNRKTRAVPMTKKVAEELRMLIEESRE 220 Query: 255 FF-------INNDKQKMNATQFSIWFKAKATKAGVNK----SAHGVRKFSATISADAGAT 303 +F + +D ++ AG++K S H +R AT G + Sbjct: 221 YFEVTTNVFLTHDGNSIDNDLLRKRMYRYGQFAGLSKECRPSPHSLRHTFATNFLRNGGS 280 Query: 304 AHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347 + LM G + Y RL + + V + + Sbjct: 281 VNALMRIMGHADITTTMRYV------RLNDEAVKEQYEKVAAKN 318 >gi|262369523|ref|ZP_06062851.1| site-specific tyrosine recombinase [Acinetobacter johnsonii SH046] gi|262315591|gb|EEY96630.1| site-specific tyrosine recombinase [Acinetobacter johnsonii SH046] Length = 308 Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats. Identities = 51/294 (17%), Positives = 107/294 (36%), Gaps = 40/294 (13%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIR-------KSGDFDYRKITTKHIRSGVES 125 L++ + K + + ++ ++E + + GD + + + I VE Sbjct: 7 QLLAMWLKQREIQNQSAHTLQAYERDVSDFLLFCEQKKLELGDVEATDL-REFIAQKVEY 65 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI-------------R 172 ++ + SS + L+S+R KWA + +++A NP + ++ + Sbjct: 66 QQLSSSSLQRMLSSIRQFMKWAEQGQHLAFNPADDFQLKRKPRPLPGLVDIETINQILDQ 125 Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232 +++++Q W + + E L SGLR ++ ++ + N ++ G Sbjct: 126 ALPEKEVEQ--QMWY---RDKALLELLYSSGLRLAEVQGLRIKDIDFNRQLLRITGKGNK 180 Query: 233 ITV-----ELPDGFMKLLAMTP------IGKETFFINNDKQKMNATQFSIWFKAKATKAG 281 V + D MK L++ P + FI + Q K +A +AG Sbjct: 181 TRVVPFGSKAKDAVMKWLSIYPLWNGDFVPDAQVFITQKGNPLGMRQIENRVKFQAQRAG 240 Query: 282 --VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 ++ H +R A+ + G + + YT D RL Sbjct: 241 VNIDLHPHLLRHCFASHMLSNSGDLRAVQEMLGHSNLSTTQIYTH-VDFDRLAQ 293 >gi|253581279|ref|ZP_04858533.1| transposase [Ruminococcus sp. 5_1_39B_FAA] gi|251847433|gb|EES75410.1| transposase [Ruminococcus sp. 5_1_39BFAA] Length = 285 Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats. Identities = 44/265 (16%), Positives = 100/265 (37%), Gaps = 22/265 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK---HTPSSAIQFLTSMR 141 +L ++ ++ + + ++ D +TT + + +K +P + + + +R Sbjct: 21 RNLKDSTIHAYCTSVAHFLNRTA-KDIDALTTDDVDIFLTEKKLSGISPETYNHYHSGIR 79 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY 201 +K +++ + + + R KR + TK ++ + + + Sbjct: 80 FFYKKILKKNWDDDD----IPRMKRDRKLPTVLTKAEISAILDATP-NLKHKAMIATMYS 134 Query: 202 SGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLL------AMTPIGKE 253 GLR S+ + N I+ K+ + L D +++L P G Sbjct: 135 GGLRVSEVTHLHYDDISRTNKTIHIRDGKSRSDRYTLLADRTLEILTEYWFQCGRPRG-- 192 Query: 254 TFFINND-KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMAT 310 F ++ + +F+ A +AG+ K S H +R A+ ++G + A Sbjct: 193 ILFPSSWTGDYLTKDSVIQFFRESAERAGIQKHVSTHCLRHSFASHLFESGCDIKYIQAL 252 Query: 311 YGWKTVDQAETYTKGADRIRLGIKN 335 G + E Y +++ LGIK+ Sbjct: 253 LGHRDPKSTEIYLHVSNKTLLGIKS 277 >gi|302878649|ref|YP_003847213.1| integrase family protein [Gallionella capsiferriformans ES-2] gi|302581438|gb|ADL55449.1| integrase family protein [Gallionella capsiferriformans ES-2] Length = 298 Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats. Identities = 45/284 (15%), Positives = 104/284 (36%), Gaps = 26/284 (9%) Query: 70 TLKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGD-FDYRKITTKHIRSG----V 123 TL+ + SL+ ++ ++ + + + + +R Sbjct: 2 TLQDACQSFLSHCRSAVSLSEHTLRAYTFDLEDFQNHAQHETNLSLLNKDDLRKFIRHLR 61 Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV-ERPKRKTEGIRPWTKEDMQQF 182 E RK + + + +++LF+W ++ ++INP ++ ER + R E+++ Sbjct: 62 EERKLKEITIKRRIACLKLLFRWVQQENMISINPFDNLNERIRLPKRLPRALGSEEIKLL 121 Query: 183 KSFWSEGSQPR--------LAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTI 232 + + + +A + LL +G+R + + ++ L + I+ + Sbjct: 122 TGAINLEATDKEFQEFVTGIATKLLLTTGIRVGELVKIDIEDLVLPDCSLKIQGKGNRQR 181 Query: 233 ITVELPDGFMKLLAMTPIGKET-------FFINNDKQKMNATQFSIWFKAKATKAGVNK- 284 + + +A + T FI + I A+KAG+ + Sbjct: 182 LVYLFEPKLNQAIARYLTIRLTRATETKKLFITEAGIPFTTQKTRILLGDLASKAGIERR 241 Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 + H +R +AT +AG + G +++ E YT D Sbjct: 242 ITPHMLRHTTATQLLEAGLDIRYVQKLLGHQSISTTEIYTHVTD 285 >gi|312880385|ref|ZP_07740185.1| integrase family protein [Aminomonas paucivorans DSM 12260] gi|310783676|gb|EFQ24074.1| integrase family protein [Aminomonas paucivorans DSM 12260] Length = 309 Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats. Identities = 57/298 (19%), Positives = 109/298 (36%), Gaps = 32/298 (10%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129 TL ++ EY LA ++ + Q +S D R + + + Sbjct: 13 TLSQMVEEYLDERS-LDLAPSTVKNQGYILRQFAAQSQDEGNRADAVR-----LLQHAKS 66 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ-------- 181 P+ + +++ F W + Q Y NP + R +G + +Q Sbjct: 67 PNVHNLYRATLKCFFDWCISQGYRTDNPGEGI----RTKKGTHKFIDTPVQALDSFIREG 122 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ----NNIFSIKTQKTGTIITVEL 237 F + G + + A FL+ +G R +++ + + + + +T KT T TV Sbjct: 123 FDTTTYVGLRDKAAVLFLIDTGARPNEAWQLRPEDVDLVQGIALLRAETTKTRTPRTVFF 182 Query: 238 PDGFMKLLAMTPIGKE-------TFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVR 290 KLL + F + M +T+F + + G+N + + +R Sbjct: 183 SKPTAKLLNTLLGNRPDWWGPDVPIFAASTGSPMTSTEFGHRLRPVTARFGLNLTVYSLR 242 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348 AT G +A EL G + T+ A+ R ++ + R +S V++ P Sbjct: 243 HIFATNFLRGGGSALELQRILGHSNMTMT---TRYANLNREDLQEAHRHASPVNALFP 297 >gi|257089964|ref|ZP_05584325.1| phage integrase [Enterococcus faecalis CH188] gi|312903388|ref|ZP_07762568.1| tyrosine recombinase XerC [Enterococcus faecalis TX0635] gi|256998776|gb|EEU85296.1| phage integrase [Enterococcus faecalis CH188] gi|310633264|gb|EFQ16547.1| tyrosine recombinase XerC [Enterococcus faecalis TX0635] gi|315577626|gb|EFU89817.1| tyrosine recombinase XerC [Enterococcus faecalis TX0630] Length = 299 Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats. Identities = 39/267 (14%), Positives = 97/267 (36%), Gaps = 29/267 (10%) Query: 85 GSLAVNSRISFE---SYFDQIIRKSGDFDY---RKITTKHIRSGVESRKHTPSSAIQFLT 138 + ++ +++ +F ++ SG+ +Y + + S + ++++ +S + + Sbjct: 18 RGYSEKTKKAYQEDIQHFFSFLKTSGNDNYLTVEHLDVRAYLSELYDQEYSRNSISRKIA 77 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS----FWSEGSQPRL 194 S+R ++++++ E + NP V K++ R + +++M + + Sbjct: 78 SLRSFYQFSLKNEAIQENPFSYVHMKKKQLRLPRFFYEKEMDALFESAQGEHPLDLRNQA 137 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-ITVE------------LPDGF 241 E L +G+R S+ V + + G V L +G Sbjct: 138 LLEVLYGTGIRVSECANLTVDAVDFQASVLLVHGKGNKDRYVPFGSFAQDALKDYLENGR 197 Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQ----FSIWFKAKATKAGVNKSAHGVRKFSATIS 297 L+ F+N+ +++ T + K + A ++ H +R AT Sbjct: 198 ALLMTKYQKKHPYVFVNHHGEQITPTGIEYVLNQLIKKSSLNAEIH--PHMLRHTFATHL 255 Query: 298 ADAGATAHELMATYGWKTVDQAETYTK 324 + GA + G + + Y Sbjct: 256 LNNGADMRTVQELLGHANLSTTQIYAH 282 >gi|154505593|ref|ZP_02042331.1| hypothetical protein RUMGNA_03132 [Ruminococcus gnavus ATCC 29149] gi|166032352|ref|ZP_02235181.1| hypothetical protein DORFOR_02055 [Dorea formicigenerans ATCC 27755] gi|153794032|gb|EDN76452.1| hypothetical protein RUMGNA_03132 [Ruminococcus gnavus ATCC 29149] gi|166028075|gb|EDR46832.1| hypothetical protein DORFOR_02055 [Dorea formicigenerans ATCC 27755] Length = 387 Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats. Identities = 54/334 (16%), Positives = 109/334 (32%), Gaps = 64/334 (19%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFES-YFDQIIRKSGDFDYRKITTKHIRSGVESRKH 128 TL + + ++ ++++ ++ Y I ++ G + +++ Sbjct: 52 TLDTWFDIWLNTHKKRTIKESTQVRYDDFYRRYIKKQIGKQRVADFNPIILERLLQNMAD 111 Query: 129 ---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + + + +FK+AV + NPC VE PK KT+ IR T ++ ++ Sbjct: 112 DDYSTKTIRDVYNILNAMFKYAVHNRILTFNPCAGVEVPKTKTKQIRVLTVKEQREVLEH 171 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ---------------------NNIFSI 224 E L + L +G+R + + +F Sbjct: 172 AKERIHENL-IQVALGTGMRGGELLGLTWDDVDFRKREISVNKTLVYIKDKETKKYVFKY 230 Query: 225 KTQKTGTII-TVELPDGFMKLLAMT---------------PIGKE--TFFINNDKQKMNA 266 +T KT I T+ + D K L P+ F+ + + + Sbjct: 231 QTPKTKNSIRTIPMQDSVYKALKRQWIQLKEMQLSASEWQPLEGFENLVFVGKNGKPITE 290 Query: 267 TQFSI---WF-----KAKATKAGVNKS---------AHGVRKFSATISADAGATAHELMA 309 F + W K + +A NK+ H +R AT +AG A + Sbjct: 291 HTFQVTLDWIEKSINKERKKQAEKNKTVFIPIPHFYPHALRHTFATRCFEAGIDAKVVQG 350 Query: 310 TYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSV 342 G ++ + YT D ++ ++ Sbjct: 351 FLGHYSIAITLDLYTHVTDDK--AKSEMDKLQNL 382 >gi|291522920|emb|CBK81213.1| Site-specific recombinase XerD [Coprococcus catus GD/7] Length = 280 Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats. Identities = 44/265 (16%), Positives = 99/265 (37%), Gaps = 22/265 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK---HTPSSAIQFLTSMR 141 +L ++ ++ + + + D +TT + + + +K +P + + + +R Sbjct: 16 RNLKDSTIHAYCTSVAHFLNHTA-KDIDALTTDDVDTFLTEKKLSGISPETYNHYHSGIR 74 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY 201 +K ++ + + + R KR + TK ++ + + + Sbjct: 75 FFYKKVLKMNWDDDD----IPRMKRDRKLPAVLTKAEISAILDATP-NLKHKAMIATMYS 129 Query: 202 SGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLL------AMTPIGKE 253 GLR S+ + N I+ K+ + L D +++L P G Sbjct: 130 GGLRVSEVTHLHYDDISRTNKTIHIRDGKSRSDRYTLLADRTLEILTEYWFQCGRPRG-- 187 Query: 254 TFFINND-KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMAT 310 F ++ + +F+ A +AG+ K S H +R A+ ++G + A Sbjct: 188 ILFPSSWTGDYLTKDSVIQFFRESAERAGIQKHVSTHCLRHSFASHLFESGCDIKYIQAL 247 Query: 311 YGWKTVDQAETYTKGADRIRLGIKN 335 G + E Y +++ LGIK+ Sbjct: 248 LGHRDPKSTEIYLHVSNKTLLGIKS 272 >gi|85708224|ref|ZP_01039290.1| site-specific recombinase, phage integrase family protein [Erythrobacter sp. NAP1] gi|85689758|gb|EAQ29761.1| site-specific recombinase, phage integrase family protein [Erythrobacter sp. NAP1] Length = 330 Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats. Identities = 52/273 (19%), Positives = 103/273 (37%), Gaps = 15/273 (5%) Query: 81 SAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139 S HW ++R + +Y D ++I + G I I +S + + + Sbjct: 59 SPHWK---PSTRAASRAYIDKRLIPRFGTLCVDAIERADINRWRDSMADVGGAFNRSIPV 115 Query: 140 MRVLFKWAVRQEYVA--INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR---- 193 M V+ ++A + Y NPC V R KR R + ++ ++ +E Sbjct: 116 MSVMMQYAEKLGYREKNTNPCRGVSRFKRDLPE-RYLSADEYRRLGKVLAEHDGANEFVV 174 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPI-GK 252 A L+Y+G R S+ +++Q + ++ KTG T+ L + +L G Sbjct: 175 PALRMLIYTGARVSEIATLRWRYVQPSRLALPDSKTG-PKTIYLNPQAIAVLDALQRRGD 233 Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYG 312 + +++ W K + A + H +R A+++ G + G Sbjct: 234 DQLVFPAMYREVPINLGQHWEKIRRKAALPDVRLHDLRHSFASVAIAKGIPLATIGKLLG 293 Query: 313 WKTVDQAETYTKGADRIRLGIKNSRRISSVVDS 345 + Y AD + +++ RI S + + Sbjct: 294 HALPETTARYAHLAD--EVISESADRICSSLAN 324 >gi|104774158|ref|YP_619138.1| site-specific recombinase [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|116514251|ref|YP_813157.1| integrase [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|122275017|sp|Q04A03|XERC_LACDB RecName: Full=Tyrosine recombinase xerC gi|123378433|sp|Q1G9V2|XERC_LACDA RecName: Full=Tyrosine recombinase xerC gi|103423239|emb|CAI98072.1| Site-specific recombinase [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|116093566|gb|ABJ58719.1| tyrosine recombinase XerC subunit [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] Length = 295 Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats. Identities = 40/264 (15%), Positives = 102/264 (38%), Gaps = 24/264 (9%) Query: 85 GSLAVNSRISFESYF---DQIIRKSGDFD-YRKITTKHIRSGVES--RKHTPSSAIQFLT 138 S + + ++++ + +++G F + +I+ + + + + +K S+ + L+ Sbjct: 15 RSYSPKTVLAYQKDLAAAKKFWQENGGFPGWDQISRRDLEIYLLATGQKLASSTLSRKLS 74 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG----SQPRL 194 S++ +++ R+ V +P ++++ + K + + ++++ Q ++G + R Sbjct: 75 SLKSFYRFLTRRGLVKADPTVAIQLRRGKKKLPEFFYQDEVGQVIRSLNDGKPLTVRNRA 134 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLL-----AMT 248 +G+R S+ ++ L N + K V K L A Sbjct: 135 IVALFYATGMRLSELTDLKIKQLDLENGMILVHGKGNKDRYVFFDQESKKYLEEYLQAAR 194 Query: 249 P------IGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADA 300 P F+N + +++ + + KAG+ H +R AT + Sbjct: 195 PSLLKNEPDTGAVFLNKLGRPISSRGIAKAVQQIFQKAGLTAGAHPHELRHSFATAMLNN 254 Query: 301 GATAHELMATYGWKTVDQAETYTK 324 GA + G + + + YT Sbjct: 255 GADLRSVQELLGHEDLSTTQIYTH 278 >gi|257486889|ref|ZP_05640930.1| Phage integrase:Phage integrase, N-terminal SAM-like protein [Pseudomonas syringae pv. tabaci ATCC 11528] gi|331013460|gb|EGH93516.1| Phage integrase [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 319 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 43/270 (15%), Positives = 89/270 (32%), Gaps = 30/270 (11%) Query: 89 VNSRISFESYFDQIIRKSGDF---DYRKITTKHI---RSGVESRKHTPSSAIQFLTSMRV 142 +R +++ G ++R +T H+ R+ +E R ++ + L ++ Sbjct: 39 PRTRRAYQIDLQDFCSFVGLAGADEFRAVTRAHVLAWRAQLEQRGLAGATIRRKLAALAS 98 Query: 143 LFKWAVRQE-YVAINPCLSVERPKRKTEGIRP--WTKEDMQQFKSFWSE----GSQPRLA 195 LF + NP V+RP+ + + + G + R Sbjct: 99 LFDHLLENNAVAGGNPVHGVKRPRIDSNEGKTPALADHQAKALLDAPPAESLKGLRDRAV 158 Query: 196 FEFLLYSGLRCSDSCRAGVQHL--QNNIFSIK-TQKTGTIITVELPDGFMKLLAMTPIGK 252 LLY GLR ++ + L + I ++ K G + + L + + Sbjct: 159 LAVLLYHGLRREEAAQLQTSDLQERRGIKHLRVQGKGGKLRWLPLHPVAAERIYAYIEQN 218 Query: 253 E-------TFFINNDKQ----KMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISA 298 + F + + ++A A AG+ HG+R +AT + Sbjct: 219 MERGAGYGSLFRSLRGRSSGTGLSADGIYKIVCHWAISAGIKVEGLGVHGLRATAATNAL 278 Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADR 328 + A ++ G + Y + R Sbjct: 279 EHDADIAKVQIWLGHANISTTRLYDRRGQR 308 >gi|297184071|gb|ADI20190.1| hypothetical protein [uncultured Sphingobacterium sp. EB080_L08E11] Length = 343 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 45/274 (16%), Positives = 100/274 (36%), Gaps = 24/274 (8%) Query: 74 LISEYRKSA-HWGSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRS---GVESR 126 I ++ + + ++++ ++ +R+ D + H++ + Sbjct: 51 YIDQFLAYLIAERGYSPKTSVAYKKELERWALYLREEADASLKAAQKAHVKRYIVWRNKQ 110 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 +P S + L+ +R +KWA+R+ V NP V K + + K+D++ + Sbjct: 111 GISPRSINRSLSCIRTFYKWAIREALVCENPGQGVRSMKTAKKVVMSVPKDDLKALVNDP 170 Query: 187 S------EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPD 239 EG + +L L GLR ++ H + ++ K + +P Sbjct: 171 ELFTTDFEGRRDQLLLLLLYGLGLRRAEVISLTPTHFDWSRKLVRVIGKRNKERQIPMPA 230 Query: 240 GFMKLLAM-------TPIGKE-TFFINNDKQKMNATQFSIW--FKAKATKAGVNKSAHGV 289 + P+ + T + +K+ F T + V+K+ H + Sbjct: 231 LLEEYYLRYVEIRDQLPVRHDATLLLTAKGKKLYDNLVYNRVLFYLNRTTSVVDKNPHAL 290 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYT 323 R AT +AG + + G +++ + YT Sbjct: 291 RHSYATHLLNAGVDINTVKELLGHESLSSTQVYT 324 >gi|148285126|ref|YP_001249216.1| phage-related integrase [Orientia tsutsugamushi str. Boryong] gi|146740565|emb|CAM81175.1| phage-related integrase [Orientia tsutsugamushi str. Boryong] Length = 442 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 39/267 (14%), Positives = 94/267 (35%), Gaps = 28/267 (10%) Query: 83 HWGSLAVNSRISFESYFDQIIRKSG---DFDYRKITTKHIRSGVESRKHTPS--SAIQFL 137 + + + S++ +++ + + +IT + I+ + +A L Sbjct: 127 KYTEYSSHHHRSWKRTSERVKIYAAFLYNKKISEITKEDIQKIFDEITARKHYVTANNIL 186 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW--SEGSQ---- 191 ++ +F A+ + NP ++R K+++ T E+M++ E SQ Sbjct: 187 MNLSPIFNKAIEWGLIDKNPVHGIKRHKQESRSRYV-TNEEMERLMKVLVEKENSQLTEE 245 Query: 192 -------PRLAFEFLLYSGLRCSDSCRAGVQHLQNNI----FSIKTQKTGTIITVELPDG 240 L L++ R + + + K G + + L D Sbjct: 246 QKQSKISETLFLFIALFTAARSGNILAMRWDEISLSEKIWCIPKTKSKNGKQLYIGLADK 305 Query: 241 FMKLLAMTP-IGKETFFI---NNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSAT 295 + +L K + + ++ + ++++ + KAG+ N + H +R+ AT Sbjct: 306 LIAVLQNRKLCSKSEWILPSVKDNSKHISSSTIHRAWAKIRKKAGIPNVTIHDLRRTFAT 365 Query: 296 ISADAGATAHELMATYGWKTVDQAETY 322 + G T + G + + Y Sbjct: 366 WMINNGETVDTISQILGHSNTNTTKIY 392 >gi|330825567|ref|YP_004388870.1| integrase family protein [Alicycliphilus denitrificans K601] gi|329310939|gb|AEB85354.1| integrase family protein [Alicycliphilus denitrificans K601] Length = 401 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 61/297 (20%), Positives = 103/297 (34%), Gaps = 19/297 (6%) Query: 48 MSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKS 106 A + +K T K L + +++ ++ D +I Sbjct: 77 WLAEVRRGGDPGLDKAEARKAPTAKELCGRFMDDHSKPHNKPSTQAGYQYQIDSFVIPAF 136 Query: 107 GDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAI--NPCLSVERP 164 G ++T I + ++ + +P+ A + L+ +R +F A Y NPC V + Sbjct: 137 GSKKVHEVTRHDITALMKRMEKSPTQANRVLSLVRKMFNLAELWGYRPDGSNPCRHVPKY 196 Query: 165 KRKTEGIRPWTKEDMQQFKSFWS-------EGSQPRLAFEFLLYSGLRCSDSCRAGVQHL 217 K R T E M + ++ E LA R S+ L Sbjct: 197 PEKG-STRLITDEQMVKLFAYLDKAEVDGLEHPIHLLAVRLQFEFAARMSEVLLLRWHWL 255 Query: 218 Q--NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFF----INNDKQKMNATQFSI 271 N KTG + L +LL P ++ + I + K+ ++ + Sbjct: 256 DLPNGRVVWPDSKTGDMSK-PLSAEARRLLESAPHYGDSPYVCPAILDHKRPLSPHSYYQ 314 Query: 272 WFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 ++ +AGV K HG+R SAT A++G MA KTV Y D Sbjct: 315 AWRRILDRAGVPKVGTHGIRHRSATDIANSGVPLKVGMALTAHKTVAMFMRYVHTED 371 >gi|254283555|ref|ZP_04958523.1| hypothetical protein NOR51B_2055 [gamma proteobacterium NOR51-B] gi|219679758|gb|EED36107.1| hypothetical protein NOR51B_2055 [gamma proteobacterium NOR51-B] Length = 391 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 50/350 (14%), Positives = 108/350 (30%), Gaps = 32/350 (9%) Query: 12 TKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGS-------TPKREYINSP 64 ++ + G ++ G+ + S A + Sbjct: 38 VRDTSLVGTYYQRYKNAAGKTAHVKIGRASDISLKAARARAQQLRTDIQSGSDPQADTRQ 97 Query: 65 RKKPTTLKWLI-SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123 RK T Y H + + + ++ + G +I+ + ++ Sbjct: 98 RKAVPTWNAFFTHSYL--PHAKQKKRTWKNDADMHRLRLGPRFGATPINRISRQEVQQFH 155 Query: 124 ESRKHT---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 + + P++A L +R AV + NP V++ E R ++ +++ Sbjct: 156 NELRESGIAPATADHHLKLLRHALNLAVDWGLLQANPAARVKQFNVFNEVERYLSEVELR 215 Query: 181 QFKSFWS--EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQKTGTIIT 234 + + E A +LL +G R + A + + K+ + + Sbjct: 216 RLLAVLKSHENRPVSCAVLWLLCTGSRVGEMLAAEWPDIDRGNRVWVVHATNSKSKKLRS 275 Query: 235 VEL-------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSA 286 + L D L P G+ FI + + AG+ N + Sbjct: 276 IPLNDVALGVLDELQTLPRYQPDGR--LFIGKRGPLGTINKVWYGIRDA---AGLENFTL 330 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336 H +R A++ ++G + +E+ G Y+ + G NS Sbjct: 331 HCLRHSHASLLVNSGHSLYEVQRVLGHSDPKVTMRYSHLSQESLQGAANS 380 >gi|28867454|ref|NP_790073.1| integrase/recombinase XerC [Pseudomonas syringae pv. tomato str. DC3000] gi|213970725|ref|ZP_03398850.1| integrase/recombinase XerC [Pseudomonas syringae pv. tomato T1] gi|81732947|sp|Q88B11|XERC_PSESM RecName: Full=Tyrosine recombinase xerC gi|28850688|gb|AAO53768.1| integrase/recombinase XerC [Pseudomonas syringae pv. tomato str. DC3000] gi|213924559|gb|EEB58129.1| integrase/recombinase XerC [Pseudomonas syringae pv. tomato T1] Length = 299 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 36/259 (13%), Positives = 92/259 (35%), Gaps = 19/259 (7%) Query: 85 GSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIR---SGVESRKHTPSSAIQFLT 138 ++ ++ ++ ++ +K+ + + +H+R + + + S + L+ Sbjct: 16 RQVSPHTLEAYRRDLSKVLAYCQKARLSSWNDLDIQHLRSFTARQHQQGQSSRSLARMLS 75 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRL 194 ++R +K+ R+ +P + PK + + + Q E + + Sbjct: 76 AVRGFYKYLNREGLCQHDPANGLSPPKGERRLPKTLDTDRTAQLLDGGVEDDFLAHRDQA 135 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV--------ELPDGFMKLLA 246 E L SGLR S+ + L ++ G+ V + + ++ L A Sbjct: 136 IMELLYSSGLRLSELTGLNLDQLDLRDGLVQVLGKGSKTRVLPVGSKARQALETWLPLRA 195 Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAK-ATKAGVNKSAHGVRKFSATISADAGATAH 305 +T + F++ +++ + K + G N H +R A+ ++ Sbjct: 196 LTNPQDDAVFVSQQGKRLGPRAVQLRIKTAGERELGQNLHPHMLRHSFASHLLESSQDLR 255 Query: 306 ELMATYGWKTVDQAETYTK 324 + G + + YT Sbjct: 256 AVQELLGHADIKTTQIYTH 274 >gi|313888282|ref|ZP_07821953.1| phage integrase, N-terminal SAM domain protein [Peptoniphilus harei ACS-146-V-Sch2b] gi|312845685|gb|EFR33075.1| phage integrase, N-terminal SAM domain protein [Peptoniphilus harei ACS-146-V-Sch2b] Length = 329 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 54/324 (16%), Positives = 108/324 (33%), Gaps = 50/324 (15%) Query: 72 KWLISE---YRKSAHWGSLAVNSRISFESYFDQIIR-------------KSGDFDYRKIT 115 LI + Y KS + N+ + R + I+ Sbjct: 4 SNLIDDFLDYMKST--KGASDNTVKEYYYDLRMFARFIKRRKGLVDSKIEFDHITIEDIS 61 Query: 116 TKHIRSGV------------ESRKHTPSSAIQFLTSMRVLFKWA-VRQEYVAINPCLSVE 162 + S RK + S + ++S+R + + + + + INP + ++ Sbjct: 62 PDLLESVTKQDIYAYNAFLERERKISNRSKFRKISSIRSFYNYLHAKIDIIKINPVIDID 121 Query: 163 RPKRKTEGIRPWTKEDMQQFKSFWSEGS-------QPRLAFEFLLYSGLRCSDSCRAGVQ 215 PK + T + E + L G+R S+ + Sbjct: 122 MPKVEKTLPVYLTLDQSLNLLKTIEESKIKPLYKKRDYAIVTLFLNCGMRLSELAGMDIS 181 Query: 216 HLQNNIFSIKTQKTGTIITVELPDG----FMKLLAMTP-IGKETFFINNDKQKMNATQFS 270 HLQ + K + L + + L + P I + F++ +Q+M+ Sbjct: 182 HLQQDNTLKVIGKGNKERVIYLNEASVYAIEEYLKLRPQIKDDALFLSMRQQRMSNRSIQ 241 Query: 271 IWFKAKATKAGVN---KSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYT--- 323 + +G++ S H +R +AT+ + G A L G ++V+ E YT Sbjct: 242 HMIEKHMKNSGLDTNIYSVHKLRHTAATLLYEYGNADIRALQEILGHESVNTTEIYTHVN 301 Query: 324 KGADRIRLGIKNSRRISSVVDSDD 347 K A R + ++++ + D Sbjct: 302 KKALRKMVDSNPLSKLNNYTNKKD 325 >gi|297571163|ref|YP_003696937.1| integrase family protein [Arcanobacterium haemolyticum DSM 20595] gi|296931510|gb|ADH92318.1| integrase family protein [Arcanobacterium haemolyticum DSM 20595] Length = 313 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 47/295 (15%), Positives = 100/295 (33%), Gaps = 30/295 (10%) Query: 68 PTTLKWLISEYRKSAHWGS-LAVNSRISF----ESYFDQIIRKSGD--FDYRKITTKHIR 120 PT + ++ Y++ L+ ++ ++ S + + + S D +I + +R Sbjct: 11 PTQFEQILERYQRELELRRGLSAHTCRAYLHEARSLLEFVCKHSDDPATSLPEIDIRDMR 70 Query: 121 SGVESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177 + H+ +S + S+R +W + Y A +P ++ PK E T E Sbjct: 71 LWLADNQQAGHSRASIARHSASIRTFTRWLFKNAYTAADPGTQLKSPKVSNELPHVLTVE 130 Query: 178 DMQQFKSFWSEGS--------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229 ++ E + + E L + +R S+ V + + K Sbjct: 131 QARELLRVAKERTADGNALAIRDAAIVELLYATAIRVSELTGTDVSDVSPSSNLRVIGKG 190 Query: 230 GTIITVELPDGFMKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFKAKATK 279 V L + T F+ ++++ Sbjct: 191 DKERIVPFGRPARNALMAWLDVRGTLLEKNPTEQALFVGARGKRIDPRTVRTLLTQLTKA 250 Query: 280 AGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLG 332 AG+ + + H +R +AT D G+ + G ++ + YT A+R+R Sbjct: 251 AGLPDITPHDLRHSAATHLLDGGSDLRTVQEILGHSSIGTTQRYTHVSAERLRAA 305 >gi|291299701|ref|YP_003510979.1| integrase family protein [Stackebrandtia nassauensis DSM 44728] gi|290568921|gb|ADD41886.1| integrase family protein [Stackebrandtia nassauensis DSM 44728] Length = 317 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 43/309 (13%), Positives = 107/309 (34%), Gaps = 25/309 (8%) Query: 50 ALTGSTPKREYINSPRKKPTTLKWLISEYRKSA-HWGSLAVNSRISFESYFDQII---RK 105 A + + + P + K ++ ++ H + ++ + + ++ Sbjct: 2 ARSETEAADADDSQYEALPASFKEVLGQFVHHLTHECGRSAHTVRGYRADVTSLLVHLAA 61 Query: 106 SGDFDYRKITTKHIRSGVESRKHT---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE 162 +G + +RS + +R+ +S + ++++R WA RQ ++ + + Sbjct: 62 TGTTRLAGVDIAGLRSWLANRRAQGIARASLARKVSAVRAFTAWAHRQGHLDADAGARLS 121 Query: 163 RPKRKTEGIRPWTKEDMQQFKSFWSE-----GSQPRLAFEFLLYSGLRCSDSCRAGVQHL 217 P + + + + G + R E L +G+R S+ C V + Sbjct: 122 GPSVPHNPPEILRTDQAETLAAATASDGSATGLRDRAVVELLYATGIRVSELCGLDVASV 181 Query: 218 QNNIFSIKT-QKTGTIITVELPDGFMKLLA----------MTPIGKETFFINNDKQKMNA 266 + ++ K TV + + + + +++ Sbjct: 182 DRSRNVLRVFGKGAKERTVPFGIPAARAVDDYLQRARPELAADHSGDALLLGVRGGRLHP 241 Query: 267 TQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK- 324 + + ++ G+ + HG+R +AT D GA + G ++D + YT Sbjct: 242 STVRRVLRDWLSRTGMPSLTPHGLRHSAATHLLDGGADLRSVQELLGHASIDSTQIYTHV 301 Query: 325 GADRIRLGI 333 A+R+R Sbjct: 302 SAERLRGAY 310 >gi|218232818|ref|YP_002365323.1| integrase/recombinase [Bacillus cereus B4264] gi|218160775|gb|ACK60767.1| integrase/recombinase [Bacillus cereus B4264] Length = 308 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 42/262 (16%), Positives = 95/262 (36%), Gaps = 15/262 (5%) Query: 76 SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH--TPSSA 133 ++ K + +L + +++ F +K + + K I + K ++ Sbjct: 26 EKFFKDCYLRNLRPATIGYYKNEF-HGAKKIINKQLVEWVQKDIEDLILKSKQLMKVTTI 84 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS-----E 188 L ++R + + + + + NP +++ + + + I +++++ Sbjct: 85 NTRLRALRSFYNFLDKNKLIDKNPMKNIKLLRDRQKTIETLDNQEIEKLIKTIRKQKTFV 144 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA-- 246 G + + L +G+R S+ V+ ++ N I+ K TV L D + L Sbjct: 145 GFRDEVILLVFLDTGVRLSELVGINVEDVRYNKLIIRRTKNLFERTVYLSDTTQERLESY 204 Query: 247 ---MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAG 301 + FI+ D +++N +A ++K S H R A +G Sbjct: 205 IKVRGEVATNKLFISQDNKELNPHSIQTRLTKYGKEAKISKRVSPHTFRHTMAKRMIVSG 264 Query: 302 ATAHELMATYGWKTVDQAETYT 323 A LM G + + Y Sbjct: 265 LDAFSLMHLLGHTDITVTKRYV 286 >gi|299137337|ref|ZP_07030519.1| integrase family protein [Acidobacterium sp. MP5ACTX8] gi|298600742|gb|EFI56898.1| integrase family protein [Acidobacterium sp. MP5ACTX8] Length = 317 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 38/289 (13%), Positives = 91/289 (31%), Gaps = 34/289 (11%) Query: 72 KWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK-----HIRSGVES 125 L+ EY L S +++ + + +T + + Sbjct: 11 ASLLREYMTHLRVERGLRPLSCEAYQRDLEMFAEFLEGANATLLTARQESVSGFMQHLRE 70 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 S + L+ +R ++W + + + +P +++E P + + ++ + Sbjct: 71 HGIESRSVARKLSCLRGFYRWLLMDKRIPHDPTVNIESPSSWKVLPKSLAETEVNEMLER 130 Query: 186 WSEGSQ----------PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235 ++ E L GLR + + L+ S++ + G + Sbjct: 131 TGVAARSDAADGASLRDHAILELLYAGGLRVGEIVSLRQEDLRLESASVQVRGKGDKERI 190 Query: 236 -------------ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282 + G +L+ + T F++ + + ++ Sbjct: 191 VPIGRSAIEALEAYVQRGRPELMRSKSGVQRTLFLSVRGNPLTTQKVWQMVRSV----NS 246 Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIR 330 + S H +R AT + GA + G + + YT A DR++ Sbjct: 247 HASPHKLRHSCATHMVEHGADLRTVQTLLGHADIATTQVYTHLAIDRLK 295 >gi|299144068|ref|ZP_07037148.1| tyrosine recombinase XerC [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518553|gb|EFI42292.1| tyrosine recombinase XerC [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 326 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 40/239 (16%), Positives = 89/239 (37%), Gaps = 18/239 (7%) Query: 109 FDYRKITTKHIRSGVES-RKHTPSSAIQFLTSMRVLFKWAV-RQEYVAINPCLSVERPKR 166 K+ S ++ RK++ + + ++S+R F + + + + NP ++ PK Sbjct: 70 KSINKMDIYAYNSYLDKIRKNSNKTKYRKISSIRTFFNYLSNKIDVIEFNPIEDIDMPKI 129 Query: 167 KTEGIRPWTKEDMQQFKSFWSEG-------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQN 219 + T E+ + SE ++ L G+R S+ ++ + N Sbjct: 130 EKRLPIYLTLEESKLLLKTVSESKIKDKYKTRDYAIVVLFLNCGMRLSELSGLNIKDVNN 189 Query: 220 NIFSIKTQKTGTIITVELPDGFMKLLA-----MTPIGKETFFINNDKQKMNATQFSIWFK 274 + T K T+ L + + L + F++N +++ Q + Sbjct: 190 DNTLRVTGKGNKERTIYLNNACVNALKNYLNYRNDTDNKALFLSNRNTRLSNRQIQRMVE 249 Query: 275 AKATKAGVN---KSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGADRI 329 +G++ + H +R +A++ G A L G ++V + YT D+ Sbjct: 250 KYINASGLDSEKYTVHKLRHTAASLMYQYGDADIRSLQEILGHESVTTTQIYTHINDKQ 308 >gi|167917076|ref|ZP_02504167.1| site-specific tyrosine recombinase XerC [Burkholderia pseudomallei BCC215] Length = 310 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 45/279 (16%), Positives = 93/279 (33%), Gaps = 30/279 (10%) Query: 75 ISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTP 130 I +Y + H L+ ++ ++ D++ R + +T +RS V + Sbjct: 10 IVDYLSNLRHVRKLSDHTLRAYAHELDELKRLANGRPLDSLTAIDMRSAVARAHAGGLSA 69 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 S L++ R ++W + + NP +V PKR + + +D + G+ Sbjct: 70 RSISHRLSAWRAFYRWFSQHVEMNANPVAAVRAPKRAKTLPKALSVDDTAALMDAPTAGT 129 Query: 191 ----QPRLAFEFLLYSGLRCSDSCRAGVQHLQN------NIFSIKT------QKTGTIIT 234 + E SGLR ++ ++++++ + K Sbjct: 130 AESLRDHAILELFYSSGLRLAELIGLDIEYVKDGAYRSAGWLDLAEAEVTVHGKGDKERK 189 Query: 235 VEL----PDGFMKLLAM----TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-- 284 V + D LA+ F++ +M+ K A AG+ Sbjct: 190 VPVGRKALDALHAWLAVRGELVKHDPRPLFLSVRGNRMSPGVVRERVKRAALAAGIPANV 249 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 H +R AT + + G ++ + YT Sbjct: 250 HPHVLRHSFATHVLQSSGDLRAVQELLGHASISATQVYT 288 >gi|320528392|ref|ZP_08029554.1| phage integrase, SAM-like domain protein [Solobacterium moorei F0204] gi|320131306|gb|EFW23874.1| phage integrase, SAM-like domain protein [Solobacterium moorei F0204] Length = 308 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 42/268 (15%), Positives = 96/268 (35%), Gaps = 23/268 (8%) Query: 80 KSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI--QFL 137 KS S N + + D + G + +KI + I + ++ +S + Sbjct: 20 KSKRTVSSYTNDLKQYMQFLD----EQGITNTKKIKPELIEEFIANQSEYKASTSLARMT 75 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPR 193 ++R ++ + + +P L+++ K T +++++ + + + Sbjct: 76 AAIRSFHQF-MTMMHDEPDPSLNLQVHKGPKTLPIYCTVDEIKRLMQSFDDTNIQDNLDH 134 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELP----DGFMKLLAMT 248 E + GLR S+ C + + + I+ K V +P + +++T Sbjct: 135 TLLETIYSCGLRVSEICNLTINRVDLDTGRIRVLGKGDKERIVPIPKGSIPLLKQYISIT 194 Query: 249 PI-----GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAG 301 + FF+N +K+ + + + K + K + H +R AT G Sbjct: 195 RVNLIQKKTNIFFLNRFGRKITSKYVELLLQRKCVELDFKKHITPHKLRHSYATHMLQGG 254 Query: 302 ATAHELMATYGWKTVDQAETYTKGADRI 329 A + G + E YT ++ Sbjct: 255 ADLRSIQEILGHSNIQTTEIYTHVQNKQ 282 >gi|253577472|ref|ZP_04854787.1| integrase [Paenibacillus sp. oral taxon 786 str. D14] gi|251843172|gb|EES71205.1| integrase [Paenibacillus sp. oral taxon 786 str. D14] Length = 323 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 42/298 (14%), Positives = 97/298 (32%), Gaps = 29/298 (9%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD----FDYRKITTK----HIRSG 122 + L+ + +L+ + ++ Q+ + + IT++ H + Sbjct: 25 FEDLLQSFILDCKSKNLSPLTLRFYQDSIQQMKVAFQEQQVPLNIYAITSRQIKNHFVAY 84 Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 + + + ++ + +++ K+ + ++ N + K I+ +TKE + Sbjct: 85 LIEQGKSDNTVNGRIKAVKQFLKYLFEEGWLTQNVAEELHVVKAAKLMIQTFTKEQVAAL 144 Query: 183 KSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQH--LQNNIFSIKTQKTGTIITVE 236 G + L +G+R S+ C + + I K G V Sbjct: 145 LEQPDRKTFTGYRDFTMMVLLFETGMRISELCNLKIGDLFFKEQEIRITKGKGGRARRVP 204 Query: 237 LPDGFMKLLAM-----TPIGKETFFINNDKQKMNATQFSIWFKAKATKA---GVNKSAHG 288 K++ + + F+N + ++++ + A GV S H Sbjct: 205 FQQTSAKVVRRYLDIRGDLETDALFVNINNKQISTRALQEKMQVYGIAACIKGVRVSPHT 264 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYT-------KGADRIRLGIKNSRRI 339 R A G L G T+D + Y K + ++N +R+ Sbjct: 265 FRHTMAKFYILNGGDPFTLRRILGHSTLDMVDYYVELFSSDIKQQHKKFSPVENMKRM 322 >gi|329895691|ref|ZP_08271114.1| site-specific tyrosine recombinase XerC [gamma proteobacterium IMCC3088] gi|328922209|gb|EGG29563.1| site-specific tyrosine recombinase XerC [gamma proteobacterium IMCC3088] Length = 306 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 40/261 (15%), Positives = 87/261 (33%), Gaps = 21/261 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFD---YRKITTKHIRSGVESRKHT---PSSAIQFLT 138 L+ ++ ++ D + + D + H+RS S + P+S + L+ Sbjct: 22 KQLSAHTLKHYQRDIDSFVAQLEPSDADNIHSLKEYHVRSWANSLRRKGLAPASIARHLS 81 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE---GSQPRLA 195 S+R F++ ++ ++ NP V PK+ + + + + Q SE ++ Sbjct: 82 SVRSWFQFCAKRFGLSHNPAAGVRAPKQARKLPKAMDADQINQCLVAPSESDLDTRDLAM 141 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVEL----PDGFMKLLAMTPI 250 E L GLR S+ + + T K + + D K + P+ Sbjct: 142 AELLYSCGLRLSELQSLTLAQIDIQQRLVTVTGKGNKTRQIPIGGVALDALKKWMRQHPL 201 Query: 251 GKET-----FFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGAT 303 + F + ++ A + + H +R A+ ++ Sbjct: 202 AGDLQASTPVFTTRQGKALSPRSIQTRLDRLAKHNAIPVHVHPHMMRHSFASHLLESSGD 261 Query: 304 AHELMATYGWKTVDQAETYTK 324 + G + + YT Sbjct: 262 LRAVQELLGHSNISTTQIYTH 282 >gi|324115011|gb|EGC08976.1| phage integrase [Escherichia fergusonii B253] Length = 392 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 54/328 (16%), Positives = 110/328 (33%), Gaps = 23/328 (7%) Query: 19 GKIIYYFRKG-HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP-------TT 70 G++ Y RK +G+ +P + F T Sbjct: 51 GRMSYIVRKNINGKSHYVPIGCGTQFSINEAREKASEIIYSLKRKGKIHGKDYAAIKNMT 110 Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130 LI +Y + ++ + + + G +IT I + + P Sbjct: 111 FGQLIDKYEVDVLSTGVKKSANTDRSKIKNYLYPQLGALKVAQITEGDILRYLAGLELKP 170 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP--------WTKEDMQQF 182 ++ + L ++ LF +AVR +V+ +P ++ T + W + + Q Sbjct: 171 ATRNRHLALIKALFTYAVRMNFVSCSPARYIKALPETTSQRKAMADAQSKSWMEAAI-QM 229 Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDG 240 ++ + + L +GLR ++ ++ + +++ K G + V + D Sbjct: 230 RNGEPDNAALALLVFLA-LTGLRLGETRYLLLEDIDWSRQTITLRETKNGKLRCVPVGDK 288 Query: 241 FMKLL--AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATIS 297 LL +G + + + K KAG+ + H +R AT Sbjct: 289 AFVLLTEQRQHLGDKGWVFPGYNTTNPVAEPRRLQKRICEKAGISPFTIHEMRHTFATKL 348 Query: 298 ADAGATAHELMATYGWKTVDQAETYTKG 325 ++GA H + G T+ E Y G Sbjct: 349 IESGADIHTIKDLLGHSTIKVTERYLHG 376 >gi|147669488|ref|YP_001214306.1| phage integrase family protein [Dehalococcoides sp. BAV1] gi|146270436|gb|ABQ17428.1| phage integrase family protein [Dehalococcoides sp. BAV1] Length = 368 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 50/303 (16%), Positives = 103/303 (33%), Gaps = 44/303 (14%) Query: 65 RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGV 123 + + TTL + + K W +LA + +E + II G ++ +HI+ Sbjct: 61 KPEKTTLAEYLERWLKDYVWPNLAPRTAEGYEHIIRRYIIPGLGKIQLAQLKPEHIQKYY 120 Query: 124 ESR---------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174 ++ +P + + K AV+ E + NP +++ P+ + + Sbjct: 121 ANQLSIGGDKGIGLSPRTVRHHHMCLHSALKTAVKWELLIRNPLDAIDPPRCQKHEMHTL 180 Query: 175 TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ---------------- 218 T+E + + +E + F L++GLR S+ + Sbjct: 181 TEEAVHKVLEIANE-TPYFTLFYLALFTGLRRSELLALKWSAVDLIMCQLSVSRSLHVLS 239 Query: 219 NNIFSIKTQKT-GTIITVELPD-------------GFMKLLAMTPIGKETFFINN-DKQK 263 + KT + +V L K+LA + + + F N D + Sbjct: 240 GGEIITRQTKTARSTRSVALSPSTVQVLKDHRDKQQAFKILAGSHLNNDDFIFTNIDGKP 299 Query: 264 MNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ET 321 + + + K G+N H R A++ G + G ++ +T Sbjct: 300 LLPNTITHNWIKLIRKTGLNGIRLHDARHTHASLMLKQGVHPKIVQERLGHSSIQVTLDT 359 Query: 322 YTK 324 Y+ Sbjct: 360 YSH 362 >gi|330991502|ref|ZP_08315453.1| Tyrosine recombinase xerC [Gluconacetobacter sp. SXCC-1] gi|329761521|gb|EGG78014.1| Tyrosine recombinase xerC [Gluconacetobacter sp. SXCC-1] Length = 390 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 63/351 (17%), Positives = 116/351 (33%), Gaps = 24/351 (6%) Query: 19 GKIIY--YFRKGHGRRIRLPYPHESTFIPAYMS-------ALTGSTPKREYINSPRKKPT 69 G+ +Y ++R G R H S + A + S +K Sbjct: 39 GRKVYVIHYRSGGRLRRYTIGQHGSPWTADLARDEAIRILARVHTGENPADKRSDDRKAM 98 Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESRKH 128 T+ + L +R + + I+ K G + ++ + S +H Sbjct: 99 TVTSFSRRFLDEYVDVHLKPRTRGEYRRSVELFIVPKFGSWRMADLSRAEVVEFHGSFRH 158 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAI--NPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 P A + L + +F A NPC V+R + + T+E+ + + Sbjct: 159 IPYQANRTLGVLSKMFSLADLWGIRQDGVNPCRGVKRYREERRERFL-TREEYARLGNSL 217 Query: 187 SEGSQPR----LAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDG 240 E ++ A L +G R + H+ + KTG TV+L Sbjct: 218 DEATEDMPEAARAIRLLALTGCRLREIQTLQWTHVWLNEAELRLPDSKTGAK-TVQLGTA 276 Query: 241 FMKLLAMTPI-GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISA 298 + +L TP + I K T ++ AG++ H +R A+ + Sbjct: 277 AVDVLKATPRLPDNPYVITGRKAGEYLTDLQKPWRRIRKAAGLDGVRLHDLRHSFASDAL 336 Query: 299 DAGATAHELMATYGWKTVDQAETYT--KGADRIRLGIKNSRRISSVVDSDD 347 + GA + G + Y K + R + ++RISS + Sbjct: 337 EMGADLTMIGRMLGHSDIKTTSRYAHLKRENVKRSTDQVAQRISSALTDTR 387 >gi|298482054|ref|ZP_07000243.1| tyrosine recombinase [Bacteroides sp. D22] gi|298271918|gb|EFI13490.1| tyrosine recombinase [Bacteroides sp. D22] Length = 376 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 55/295 (18%), Positives = 100/295 (33%), Gaps = 25/295 (8%) Query: 46 AY--MSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII 103 AY SAL + PK+ SP P Y ++ + ++ ++ YF + Sbjct: 72 AYINYSALKNTLPKKSGKTSPAIPPG--------YAETLRQLRYSEHTVRAYTVYFREFQ 123 Query: 104 RKSGDFDYRKITTKHIRSGVESRKHTPS----SAIQFLTSMRVLFKWAVRQEYVAINPCL 159 + + R I + I + + T + S++ F+ + QE C Sbjct: 124 QYFAGRNLRYIRPEEINAYIVHLIDTRRISSCQQNLRINSIKFYFEKVLGQERK----CY 179 Query: 160 SVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ- 218 V+R KR+ +KE+++ + F L +GLR S+ + Sbjct: 180 EVKRAKRERTLPDVLSKEEIKSILDATGPDIRLFCMFSLLYSAGLRISELLDLKPHDINV 239 Query: 219 -NNIFSIKTQKTGTIITVELPDGFMKLLAMTPI---GKETFFINNDKQKMNATQFSIWFK 274 ++ ++ K L ++ L +E F + + S K Sbjct: 240 SRSLIRVRQGKGRKDRYTLLSKPLVRKLTEYTKLYKPQEWLFERYKGEPFTESIVSKKLK 299 Query: 275 AKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 A +AG+ K H +R AT + G + G + E Y AD Sbjct: 300 EAAKEAGITKRVYPHLLRHSFATHLIEQGTDLKIVKELLGHNQLKTTEMYVHIAD 354 >gi|167579401|ref|ZP_02372275.1| site-specific tyrosine recombinase XerC [Burkholderia thailandensis TXDOH] Length = 306 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 42/280 (15%), Positives = 88/280 (31%), Gaps = 32/280 (11%) Query: 75 ISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTP 130 I++Y + H L+ ++ ++ ++ + + +T +R V + Sbjct: 6 IADYLSNLRHVRKLSDHTLRAYAHELGELRKLANGRPLESLTAVDMRGAVARAHAGGLSA 65 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 S L++ R ++W + + NP +V PKR + + +D + G+ Sbjct: 66 RSISHRLSAWRAFYRWFSQHVEMNANPVAAVRAPKRAKTLPKALSVDDAAALMDAPTAGT 125 Query: 191 ----QPRLAFEFLLYSGLRCSDSCRA-------------GVQHLQNNIFSIKTQKTGTII 233 + E SGLR ++ G L +++ K Sbjct: 126 AEHLRDHAILELFYSSGLRLAELIGLDVEYTKDGDYRSEGWLDLAEAEVTVR-GKGDKER 184 Query: 234 TVELPDGFMKLLAMT--------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284 V + + L F++ +M+ K A AG+ Sbjct: 185 KVPVGRKAIDALNAWLAVRGEFVKRDARPLFLSVRGNRMSPGVVRERVKRAALAAGIPAN 244 Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 H +R AT + + G ++ + YT Sbjct: 245 VHPHVLRHSFATHVLQSSGDLRAVQELLGHASISATQVYT 284 >gi|325204823|gb|ADZ00277.1| tyrosine recombinase XerC [Neisseria meningitidis M01-240355] Length = 301 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 38/274 (13%), Positives = 89/274 (32%), Gaps = 20/274 (7%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD---YRKITTKHIRSGVES-- 125 L + Y ++ + ++ ++ +++ + T + Sbjct: 6 LAAYLDAYLENIVREGKSEHTVAAYRRDLQELLALLEEMPSANPSNCTRGDFVQALRRLS 65 Query: 126 -RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 R + + L+S R W V++ + +P ++ PK+ + +E + Q Sbjct: 66 GRGLGERTLARKLSSWRQYCVWLVKRGLMHADPTADIKPPKQPERIPKALPQECLNQMLD 125 Query: 185 F-----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELP 238 + + FE + SGLR S+ + + ++ G V L Sbjct: 126 LPVDDSDALALRDHALFELMYGSGLRLSEIHGLDTGDVWLDEGWVRVTGKGRKQRQVPLT 185 Query: 239 ----DGFMKLL--AMTPIGKETFFINNDKQKMNATQFSIWFKAKATK--AGVNKSAHGVR 290 + L T + F + +++ Q ++ A + G + S H +R Sbjct: 186 GKSVEALKNYLPLRQTASDGKALFTGRNGTRLSQRQIQKRLESWAAQNGDGRHISPHMMR 245 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK 324 A+ + + G ++ + YTK Sbjct: 246 HSYASHLLQSSRDIRAVQELLGHSSLSTTQIYTK 279 >gi|114327281|ref|YP_744438.1| integrase/recombinase xerD [Granulibacter bethesdensis CGDNIH1] gi|114315455|gb|ABI61515.1| integrase/recombinase xerD [Granulibacter bethesdensis CGDNIH1] Length = 290 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 41/273 (15%), Positives = 90/273 (32%), Gaps = 14/273 (5%) Query: 75 ISEYRKS-AHWGSLAVNSRISFESYFDQI-----IRKSGDFDYRKITTKHIRSGVESRKH 128 I + + A A N+ +++ + + + + + + Sbjct: 5 IESFLEMLAAERGAARNTLLAYGTDLRDWSGYAARHRVDPLHADEAALRGYLAAQSGAGN 64 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 P + + L+++R +++ + Q + +P ++ PK + + ++ Sbjct: 65 GPRTQSRRLSALRQFYRFLLEQGTRSDDPTALLDAPKLPRSLPKYLDEAEVDALLQAAPA 124 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIITVELPDGFMKLLAM 247 A E L +GLR S+ + + + K G V + + +A Sbjct: 125 EPAAHAALEILYSTGLRVSEVLALPARAFRGDAPMMTVRGKGGRERMVPVSAAAISAVAA 184 Query: 248 TPIGKE----TFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADA 300 G E F + + M F++ K A +AG++ S H +R A+ Sbjct: 185 MRSGAEQSRWLFPGRDPAKPMTRQGFALMLKRVALQAGLDPARVSPHVLRHCFASHLLAR 244 Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 GA L G + + YT + Sbjct: 245 GADLRSLQMLLGHVDIATTQIYTHVLSERLRAL 277 >gi|84685885|ref|ZP_01013781.1| Phage integrase [Maritimibacter alkaliphilus HTCC2654] gi|84665978|gb|EAQ12452.1| Phage integrase [Rhodobacterales bacterium HTCC2654] Length = 379 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 52/331 (15%), Positives = 99/331 (29%), Gaps = 31/331 (9%) Query: 21 IIYYFRKGHGRRIRLPYPHES--TFIPAYMSAL-----TGSTPKREYINSPRKKPTTLKW 73 + Y R R + +F A A+ +K T+ Sbjct: 40 VQYRNRTTGRSRRQTIGQAGPLLSFANARKEAMRLLSEAAQGGDPVESKQSARKAETIAD 99 Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQ-------IIRKSGDFDYRKITTKHIRSGVESR 126 L +Y L + +S + II K G ++ + I++ S Sbjct: 100 LADQYLT------LHAKPKKREKSVANDVSMLNGIIIPKLGKQKVAQVGHRDIQALHNSL 153 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + TP A + L + +F +VR + NP VER + R + E++ +F + Sbjct: 154 RETPYRANRTLALLSKMFALSVRWGWRQDNPAKGVERFPEEKR-YRWLSDEELARFVAEL 212 Query: 187 SEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT----QKTGTIITVELPD- 239 +E R A L +G R + + K + L + Sbjct: 213 NEHPNQRAANAIRLQLLTGARIGEVLTSKWSDFDLVRGVWVKPSHHTKQKRTEHLPLSNT 272 Query: 240 --GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATI 296 ++ + + + + +++ T A + + H R A+ Sbjct: 273 AISLLQTIQESADLNHPYVFPGRNPGQPLKELKRFWQNVTTAAELSDYRIHDNRHTHASH 332 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGAD 327 G T + G + Y AD Sbjct: 333 LVSNGLTLPVVGRLLGHTNPLTTQRYAHLAD 363 >gi|160945433|ref|ZP_02092659.1| hypothetical protein FAEPRAM212_02955 [Faecalibacterium prausnitzii M21/2] gi|158443164|gb|EDP20169.1| hypothetical protein FAEPRAM212_02955 [Faecalibacterium prausnitzii M21/2] Length = 357 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 49/310 (15%), Positives = 94/310 (30%), Gaps = 24/310 (7%) Query: 58 REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF--DYRKIT 115 R+ + + P T++ ++K +L+ S + + R GD IT Sbjct: 39 RDLRPAAKANP-TIQQAFERFQKYNRLKNLSQGSLDFYVAKGRSFFRFLGDTEQPINTIT 97 Query: 116 TKHIRSGVESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172 + + + K ++ L +R W + + Y+ P + + Sbjct: 98 EETVEDYIFYMKDQQLHDTTINTNLRMVRAFLYWCMEKGYLEKYP---IRLVRADDPIKE 154 Query: 173 PWTKEDMQQFKSFWSEGS------QPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSI 224 P+T +++Q+ + + + FLL +G R S + L Sbjct: 155 PYTTDELQKLLKEPDCKTCSFAEYRNWVIVNFLLGTGCRASTLLNLQIGDLDLFAGTVFF 214 Query: 225 KTQKTGTIITVELPDGFMKLL-----AMTPIGKETFFINNDKQKMNATQFSIWFKAKATK 279 + K V L +K++ T F++ +M Sbjct: 215 RHMKARNQQIVPLSKALVKIMEEYLEHRTSDPTAPLFVSEYGNQMTLNSLGNAIWNYNHS 274 Query: 280 AGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNSR 337 GV K S H R A + AG L G + Y AD +R Sbjct: 275 RGVEKTSMHLFRHTYAKLYIQAGGDPFRLQKLLGHADLTMTRRYVALYADDLRANYDALN 334 Query: 338 RISSVVDSDD 347 + + + Sbjct: 335 PLEQLTRQNR 344 >gi|254452119|ref|ZP_05065556.1| phage integrase [Octadecabacter antarcticus 238] gi|198266525|gb|EDY90795.1| phage integrase [Octadecabacter antarcticus 238] Length = 317 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 44/258 (17%), Positives = 84/258 (32%), Gaps = 19/258 (7%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLF 144 +L S+ S + G T ++ + + S +M + Sbjct: 39 RNLGPASQSSHLRACKRFAAWLGRSPETA-TPDDVKYFQQHLIESGVSICTRNQTMTGV- 96 Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGL 204 K+ +R + + K + +K+++++ + + R+ G+ Sbjct: 97 KFLLRVTLRRHDLVAEIFHLKEPVKVPLVLSKKEIKRILAMAPS-LKARVMLSLAYGCGM 155 Query: 205 RCSDSCRAGVQHLQNN--IFSIKTQKTGTIITVELPDGFMKLLAMT------------PI 250 R + R V + ++ I I K V LP + LL P Sbjct: 156 RAGEVVRLKVGDIDSDQEIIRIVQSKGRKDRIVMLPVDILSLLRDWWQERPTGQDKDVPA 215 Query: 251 GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELM 308 + F + ++A Q S FK A +AG+ K + H +R AT + G + Sbjct: 216 PERVLFPGYRGKHLSARQISRLFKETAREAGITKPVTLHTLRHSFATHLLERGVDIRVIQ 275 Query: 309 ATYGWKTVDQAETYTKGA 326 A G + Y A Sbjct: 276 ALLGHSKLTTTARYASVA 293 >gi|148977142|ref|ZP_01813782.1| site-specific recombinase, phage integrase family protein [Vibrionales bacterium SWAT-3] gi|145963611|gb|EDK28873.1| site-specific recombinase, phage integrase family protein [Vibrionales bacterium SWAT-3] Length = 434 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 46/275 (16%), Positives = 98/275 (35%), Gaps = 20/275 (7%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESRKHT 129 L+ E ++++ + S + ++ + G F I + H+ + + Sbjct: 89 FDALVKEEWADKVCKGWKLSTQGTASSALKKNLLPEFGRFPVSCIDSCHVHRWFDELSQS 148 Query: 130 -PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 +A + L +R +FK+AV+Q Y NPC +++ RK + R + +++ + + Sbjct: 149 YAGTANRNLDVLRSIFKYAVKQGYCIDNPCDGLKQ-NRKRKLNRFLSLDELARLHKALTV 207 Query: 189 GSQPR-------LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241 SQ E +L +G R S+ ++ + + KTG + V + Sbjct: 208 VSQQGELEACCCQVLELVLLTGCRISEVTGLQWSFVKGREWHLPDSKTGAKV-VYVGKEA 266 Query: 242 MKLLAMTP---------IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKF 292 +LL+ P + F + +W + +A + H +R Sbjct: 267 QQLLSDIPQQVGAHRSESHDDVFTPLRRFVSRSTKVSMVWQQVRALAHIEDVRIHDLRHT 326 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 A+ + G + G + Y D Sbjct: 327 FASYAVLEGYPIPMVSKLLGHTRISSTLRYAHVDD 361 >gi|330997069|ref|ZP_08320931.1| integron integrase [Paraprevotella xylaniphila YIT 11841] gi|329571567|gb|EGG53249.1| integron integrase [Paraprevotella xylaniphila YIT 11841] Length = 376 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 55/295 (18%), Positives = 100/295 (33%), Gaps = 25/295 (8%) Query: 46 AY--MSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII 103 AY SAL + PK+ SP P Y ++ + ++ ++ YF + Sbjct: 72 AYINYSALKNTLPKKSGKTSPAIPPG--------YAETLRQLRYSEHTVRAYTVYFREFQ 123 Query: 104 RKSGDFDYRKITTKHIRSGVESRKHTPS----SAIQFLTSMRVLFKWAVRQEYVAINPCL 159 + + R I + I + + T + S++ F+ + QE C Sbjct: 124 QYFAGRNLRYIRPEEINAYIVHLIDTRRISSCQQNLRINSIKFYFEKVLGQERK----CY 179 Query: 160 SVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ- 218 V+R KR+ +KE+++ + F L +GLR S+ + Sbjct: 180 EVKRAKRERTLPDVLSKEEIKSILDATGPDIRLFCMFSLLYSAGLRISELLDLKPHDINV 239 Query: 219 -NNIFSIKTQKTGTIITVELPDGFMKLLAMTPI---GKETFFINNDKQKMNATQFSIWFK 274 ++ ++ K L ++ L +E F + + S K Sbjct: 240 SRSLIRVRQGKGRKDRYTLLSKPLVRKLTEYTKLYKPQEWLFERYKGEPFTESIVSKKLK 299 Query: 275 AKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 A +AG+ K H +R AT + G + G + E Y AD Sbjct: 300 EAAKEAGITKRVYPHLLRHSFATHLIEQGTDLKIVKELLGHNQLKTTEMYVHIAD 354 >gi|254452582|ref|ZP_05066019.1| phage integrase [Octadecabacter antarcticus 238] gi|254454231|ref|ZP_05067668.1| phage integrase [Octadecabacter antarcticus 238] gi|198266988|gb|EDY91258.1| phage integrase [Octadecabacter antarcticus 238] gi|198268637|gb|EDY92907.1| phage integrase [Octadecabacter antarcticus 238] Length = 320 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 44/258 (17%), Positives = 84/258 (32%), Gaps = 19/258 (7%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLF 144 +L S+ S + G T ++ + + S +M + Sbjct: 39 RNLGPASQSSHLRACKRFAAWLGRSPETA-TPDDVKYFQQHLIESGVSICTRNQTMTGV- 96 Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGL 204 K+ +R + + K + +K+++++ + + R+ G+ Sbjct: 97 KFLLRVTLRRHDLVAEIFHLKEPVKVPLVLSKKEIKRILAMAPS-LKARVMLSLAYGCGM 155 Query: 205 RCSDSCRAGVQHLQNN--IFSIKTQKTGTIITVELPDGFMKLLAMT------------PI 250 R + R V + ++ I I K V LP + LL P Sbjct: 156 RAGEVVRLKVGDIDSDQEIIRIVQSKGRKDRIVMLPVDILSLLRDWWQERPTGQDKDVPA 215 Query: 251 GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELM 308 + F + ++A Q S FK A +AG+ K + H +R AT + G + Sbjct: 216 PERVLFPGYRGKHLSARQISRLFKETAREAGITKPVTLHTLRHSFATHLLERGVDIRVIQ 275 Query: 309 ATYGWKTVDQAETYTKGA 326 A G + Y A Sbjct: 276 ALLGHSKLTTTARYASVA 293 >gi|18310077|ref|NP_562011.1| integrase/recombinase [Clostridium perfringens str. 13] gi|18144756|dbj|BAB80801.1| probable integrase/recombinase [Clostridium perfringens str. 13] Length = 338 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 37/304 (12%), Positives = 92/304 (30%), Gaps = 48/304 (15%) Query: 65 RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIR 120 +K L ++ +Y + L + ++E + + D + +HIR Sbjct: 6 KKNKNELLDILEDYMTDCKYRDLRRTTIRAYEQSLRLLFKFLEDDYKVIYVEDVKEEHIR 65 Query: 121 SGVESRKHTPS----------------------------SAIQFLTSMRVLFKWAVRQEY 152 + ++ K + +L ++++ F W + Sbjct: 66 NYIDFTKERGKYSYVANENNINSNVPQNRGDFGKKVSLCTLDNYLGNIKMFFTWCKDNKL 125 Query: 153 VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSD 208 ++ +P ++R K + T ++ + + + + L+ +G+R + Sbjct: 126 ISKDPSFKIKRIKYSRKAKAEITIDEFNKLLKSLDLTLFSEYRDYIVIQLLMDTGMRVGE 185 Query: 209 SCRAGVQHLQNN----IFSIKTQKTGTIITVELPDGFMKLLAMTP------IGKETFFIN 258 + + S + K V + ++L + F+ Sbjct: 186 CLELREEDIDIRNKTIFISGEIAKGRRDRYVFFSNTMQRMLQKWLNYKDRYVESNYIFVT 245 Query: 259 NDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTV 316 N K F + KA ++K + H +R A +G + L G + Sbjct: 246 NRGGKYQVHSFEKHMRNYLKKAKIDKQITPHTLRNNFAKRFLMSGGDIYTLSRLLGHSDI 305 Query: 317 DQAE 320 + Sbjct: 306 RTTQ 309 >gi|172062036|ref|YP_001809688.1| site-specific tyrosine recombinase XerC [Burkholderia ambifaria MC40-6] gi|171994553|gb|ACB65472.1| tyrosine recombinase XerC [Burkholderia ambifaria MC40-6] Length = 306 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 45/280 (16%), Positives = 89/280 (31%), Gaps = 32/280 (11%) Query: 75 ISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTP 130 I+ Y + H L+ ++ ++ D++ + + +T +R V + Sbjct: 6 IAAYLSNLKHVRQLSEHTLRAYTHELDELKKLAAGRPLDTLTAVDMRGAVARAHAGGLSA 65 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQFKSFW 186 S L++ R ++W + + NP +V PKR + + +D M + Sbjct: 66 RSISHRLSAWRAFYRWLAQHIEMPANPVAAVRAPKRPKTLPKALSVDDASALMDAPLAGT 125 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRA-------------GVQHLQNNIFSIKTQKTGTII 233 +EG + E SGLR ++ G L +++ K Sbjct: 126 TEGIRDHAILELFYSSGLRLAELVGLDVRYTQADGYRSAGWLDLAEAEVTVR-GKGNKER 184 Query: 234 TVELPDGFMKLLAMT--------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284 V + + L F++ +M K A AG+ Sbjct: 185 KVPVGRKAIDALNAWLAVRGEFVKHDPHPLFVSVRGNRMAPGVVRERVKRAALAAGIPAN 244 Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 H +R AT + + G ++ + YT Sbjct: 245 VHPHVLRHSFATHVLQSSGDLRAVQELLGHASISATQVYT 284 >gi|307823075|ref|ZP_07653305.1| tyrosine recombinase XerC [Methylobacter tundripaludum SV96] gi|307735850|gb|EFO06697.1| tyrosine recombinase XerC [Methylobacter tundripaludum SV96] Length = 302 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 31/261 (11%), Positives = 88/261 (33%), Gaps = 27/261 (10%) Query: 88 AVNSRISFESYFDQIIRKSGDFD------YRKITTKHIRSGVESRKHTPSSAIQFLTSMR 141 + ++ +++ + R D + + + + + S + L+++R Sbjct: 23 SEHTVKNYQRDLKHLSRYCTDKPITRWADLKHTDIRAHIASRHRKGLSSKSLQRELSAIR 82 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS------QPRLA 195 + + +++ +NP ++ PK+ + + D+ Q G+ + Sbjct: 83 SFYNYLLKKGQTDVNPAQHIQAPKQARKLPKTL---DVDQLSGLLEAGASSLLEIRDLAM 139 Query: 196 FEFLLYSGLRCSD--SCRAGVQHLQNNIFSIKTQKTGTIITVE--------LPDGFMKLL 245 FE SGLR S+ + L ++ +++ K G + + + + Sbjct: 140 FELFYSSGLRLSELSALDLTDLDLPDSTLTVRIGKGGKSRVLPVGSKAVTAIENWLQQRA 199 Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGAT 303 P + F++ ++ + + G+ + H +R A+ ++ Sbjct: 200 VKIPAIEPALFVSTRGTRLGQRNIELRLERWCKAKGIAEHIHPHMLRHSFASHLLESSHD 259 Query: 304 AHELMATYGWKTVDQAETYTK 324 + G + + YT Sbjct: 260 LRAVQELLGHSNISTTQIYTH 280 >gi|189460548|ref|ZP_03009333.1| hypothetical protein BACCOP_01189 [Bacteroides coprocola DSM 17136] gi|189432792|gb|EDV01777.1| hypothetical protein BACCOP_01189 [Bacteroides coprocola DSM 17136] Length = 388 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 43/225 (19%), Positives = 87/225 (38%), Gaps = 12/225 (5%) Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 + +S + + +R A + NP +E K+ T E+++ + + Sbjct: 167 SQNSKVSYFNKLRACINQAFEDRIIPHNPLRGIEGFKQAETERSYLTLEEVKAMAAAQCK 226 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQKTGTIITVELPDGFMKL 244 + AF F +GLR SD + + +Q K +KTG +++ ++ Sbjct: 227 YPALKNAFMFSCLTGLRKSDIEKLRWREVQQQGDFTRIIFKQKKTGGQEYLDINKQAVQY 286 Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302 + + + F+ K +A + + A +AG+ K + H R A + D GA Sbjct: 287 MGVRREPDDRVFV---GFKYSAYMIAE-LRMWANRAGITKDITFHSGRHTFAVLMLDLGA 342 Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347 + + G K + + Y K D+ + + I + +DD Sbjct: 343 EIYTVQKLLGHKELSTTQIYAKILDKKK--QEAVAMIPDIFGADD 385 >gi|134096115|ref|YP_001101190.1| tyrosine recombinase xerC [Herminiimonas arsenicoxydans] Length = 296 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 48/285 (16%), Positives = 93/285 (32%), Gaps = 40/285 (14%) Query: 87 LAVNSRISFESYFDQIIRKSGDFD-------YRKITTKHIRSGVESRKHTPSSAIQFLTS 139 ++ + S+ +++ + D + + + ++ S + L++ Sbjct: 1 MSPLTITSYRRDLLELLALATASDGNAALSAISHFQIRKFAAQLHAKGLNARSIARKLSA 60 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP------- 192 R F W Q VA NP ++ PKR + +D + S S G Sbjct: 61 WRGFFTWLSEQNAVASNPVDGIKAPKRNKPLPKALAADDAVRLVSSNSPGKNADATMQLC 120 Query: 193 -RLAFEFLLYSGLRCSDSCRA-------------GVQHLQNNIFSIKTQKTGTIITVELP 238 R FE L SGLR S+ G + ++ T K + + + Sbjct: 121 NRAMFELLYSSGLRASELVGLDLKYAQENRYTSAGWIDFDAHE-AMVTGKGSKMRSAPIG 179 Query: 239 DGFMKLLAMTPIGKET--------FFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHG 288 + L ++T F++ +++A + KA A G+ H Sbjct: 180 QPAIDALKAWLAVRDTLLKLDPHPLFLSERGTRISARVLQLRLKAHAQAVGLPMDVHPHV 239 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 +R A+ + + G ++ + YT D RL Sbjct: 240 LRHSFASHVLQSSGDLRAVQEMLGHASISATQIYT-SLDFQRLAQ 283 >gi|119503715|ref|ZP_01625797.1| site-specific tyrosine recombinase XerC [marine gamma proteobacterium HTCC2080] gi|119460223|gb|EAW41316.1| site-specific tyrosine recombinase XerC [marine gamma proteobacterium HTCC2080] Length = 304 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 43/278 (15%), Positives = 97/278 (34%), Gaps = 23/278 (8%) Query: 70 TLKWLISEYRKS-AHWGSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSG--- 122 +L + ++ ++ + + S + +R+ Sbjct: 4 SLAAACDVFLAYQRDIRQVSRHTLEGYGRDIRRFVSFCAVSNKQSATSVRESDVRNWVSQ 63 Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 + + +P+S + L+S+R L+++ ++ NP L V+ PKR + + + Sbjct: 64 LHRQGLSPTSIQRALSSVRSLYRFLSERDVTLGNPALGVQAPKRPRNLPKTLDADSVNHL 123 Query: 183 KSFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVEL- 237 + E + + E L SGLR S+ A + L+ N T K T+ + Sbjct: 124 FQWQPETTLDFRDMAIAELLYSSGLRLSELVSANINDLEFNERMITVTGKGRKTRTLPVG 183 Query: 238 ---PDGFMKLLAMTPIGKE------TFFINNDKQKMNATQFSIWFKAKATKAGVNKS--A 286 K L++ P+G E F++ +++ + + A + + Sbjct: 184 GPALTAVTKWLSLRPLGNEDVGPASPLFVSARGTRISPRSVQLRLQRMARFSALPGKLHP 243 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R A+ ++ + G + + YT Sbjct: 244 HMLRHSFASHMLESSGDLRAVQELLGHSDISTTQIYTH 281 >gi|116333446|ref|YP_794973.1| integrase [Lactobacillus brevis ATCC 367] gi|116098793|gb|ABJ63942.1| tyrosine recombinase XerC subunit [Lactobacillus brevis ATCC 367] Length = 311 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 34/268 (12%), Positives = 86/268 (32%), Gaps = 28/268 (10%) Query: 85 GSLAVNSRISFESYFDQ----IIRKSGDFDYRKITTKHIRSGVESRKHT---PSSAIQFL 137 + + ++ + + G+ + I + + ++ + L Sbjct: 16 RQYSAETVKAYHEDLSEFVQFLADNGGEKPWTAIDQLDVEVYLSDLYDRHYARTTIARKL 75 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA-- 195 +++R L+ + + +P V+ + + R + + +M + + +LA Sbjct: 76 STLRSLYSFLMSNGQAQDDPFAYVQLKRHQNHLPRFFYEREMTALFTAAAANPNEQLATR 135 Query: 196 ----FEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVEL----PDGFM---- 242 E L +G+R S+ + + + + K V D Sbjct: 136 DTALLEVLYGTGIRVSECVNLALSEIDFDGRIMLIHGKGNKERYVPFGHYASDALQTYFD 195 Query: 243 ----KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATI 296 L+A FIN+ Q++ + + ++ + + H +R AT Sbjct: 196 TARTPLMAQYQQDHPYVFINHRGQQLTSAGVTYLLNQIIKRSTLTTDIHPHMLRHTFATH 255 Query: 297 SADAGATAHELMATYGWKTVDQAETYTK 324 + GA + G ++ + YT Sbjct: 256 LLNRGADLRSVQELLGHSSLSTTQIYTH 283 >gi|229015108|ref|ZP_04172164.1| integrase/recombinase [Bacillus mycoides DSM 2048] gi|228746161|gb|EEL96108.1| integrase/recombinase [Bacillus mycoides DSM 2048] Length = 308 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 39/262 (14%), Positives = 97/262 (37%), Gaps = 15/262 (5%) Query: 76 SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH--TPSSA 133 ++ K + +L + +++ F +K + + K + + K ++ Sbjct: 26 EKFFKDCYLRNLRPATIGYYKNEF-HGAKKIINKQLVEWEQKDVEDLILKSKQLMKVTTI 84 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS-----E 188 L ++R + + + + + NP +++ + + + I +++++ Sbjct: 85 NTRLRALRSFYNFLDKHKLIDKNPMKNIKLLRDRQKTIETLDNQEIEKLIKTIRKQKTFV 144 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA-- 246 G + + L +G+R S+ V+ +++N I++ K TV L D + L Sbjct: 145 GFRDEVILLVFLDTGVRLSELIGINVEDVRHNKLIIRSTKNLFERTVYLSDTTQERLESY 204 Query: 247 ---MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAG 301 + FI+ + ++++ +A ++K S H R A +G Sbjct: 205 IKVRGEVATNKLFISQNNKELHPHSIQTRLTKYGKEAKISKRVSPHTFRHTMAKRMIVSG 264 Query: 302 ATAHELMATYGWKTVDQAETYT 323 A LM G + + Y Sbjct: 265 LDAFSLMHLLGHTDITVTKRYV 286 >gi|68171293|ref|ZP_00544693.1| Phage integrase:Phage integrase, N-terminal SAM-like [Ehrlichia chaffeensis str. Sapulpa] gi|88658163|ref|YP_506998.1| tyrosine recombinase XerD [Ehrlichia chaffeensis str. Arkansas] gi|67999274|gb|EAM85923.1| Phage integrase:Phage integrase, N-terminal SAM-like [Ehrlichia chaffeensis str. Sapulpa] gi|88599620|gb|ABD45089.1| tyrosine recombinase XerD [Ehrlichia chaffeensis str. Arkansas] Length = 309 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 38/278 (13%), Positives = 86/278 (30%), Gaps = 33/278 (11%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITT-----KHIRSGVESRKHTPSSAIQFLTS 139 ++ N+ S+ + + + D + + + + ++ + +++ Sbjct: 18 KHVSHNTYQSYRTDLLGLCKFIDRNDLLLTDASIHELQDYIRFLYEKGYKANTVSRKISA 77 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-----SEGSQPRL 194 ++ L+ + R + +P + ++ PK + + E++ +G + Sbjct: 78 IKNLYGFLYRDNIIENDPTVYLDSPKLSRSLPKTLSYEEVNILLDVAALDVSPDGRRINA 137 Query: 195 AFEFLLYSGLRCSDSCRAG----VQHLQNNIFSI----KTQKTGTIITVELPDGFMKLLA 246 L SG+R S+ + L + I K + L + + Sbjct: 138 IVNILYSSGIRISELVYLKFREVREALDDGDTEICHMKIQGKAKKERIILLNSSAVTSIQ 197 Query: 247 MTPIGKETFFINNDK------------QKMNATQFSIWFKAKATKAGVNK---SAHGVRK 291 E F N K + + K A AG+N S H +R Sbjct: 198 KYMEVYEYFIPNGYKMSQWLFPGTKFDNPVTRQRVGQLLKNLAMNAGINVTHVSPHKLRH 257 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 AT + G+ + G + + YT A Sbjct: 258 SFATHLLNNGSDIVFIQKMLGHANLATTQIYTHVASER 295 >gi|325068736|ref|ZP_08127409.1| tyrosine recombinase XerD [Actinomyces oris K20] Length = 307 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 46/277 (16%), Positives = 98/277 (35%), Gaps = 37/277 (13%) Query: 85 GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVE--------SRKHTPSSA 133 L+ ++ ++E + +R G ++++ + +E +R SSA Sbjct: 12 RGLSPHTLSAYERDLGRYLRYLRSAGISAPQEVSRNDVAGFLEVLRTGSDGARPLASSSA 71 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-----SE 188 + +T++R K+ + + + +P +V P+ + +++++ Sbjct: 72 SRTVTAVRGWHKFLLAEGTTSEDPSATVRPPQPGRRLPKALGVDEVRRLLEAAGVDDSPV 131 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVEL-------PDG 240 + R E L +G R S++ V L + ++ K V + D Sbjct: 132 SLRDRALLEVLYATGARISEAVGLVVDDLDTDSKLLRLFGKGRKERVVPMGAYAWEALDA 191 Query: 241 F----MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---------NKSAH 287 + +LA G F+N + ++ + A +AG+ S H Sbjct: 192 YLVRGRPVLAEKGRGVPQVFLNTLGRPLSRQSAWAVLQQAAERAGLIGTDGADERRISPH 251 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 +R AT GA + G +V + YTK Sbjct: 252 TLRHSFATHLLAGGADVRVVQEMLGHASVTTTQIYTK 288 >gi|213585520|ref|ZP_03367346.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 259 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 39/241 (16%), Positives = 83/241 (34%), Gaps = 23/241 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESR---KHTPSSAIQFLTS 139 +LA N+ ++ ++ +++ + R + +S+ + L++ Sbjct: 19 RNLAENTLSAYRRDLSMVVAWLHHRGKTLATAQADDLQTLLAERVEGGYKATSSARLLSA 78 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195 MR F+ R++Y +P + PK + ++ +++ + + Sbjct: 79 MRRFFQHLYREKYREDDPSAQLASPKLPQRLPKDLSEAQVERLLQAPLIDQPLELRDKAM 138 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGKET 254 E L +GLR S+ + + ++ K V L + + L Sbjct: 139 LEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVYWLETYLEHGRP 198 Query: 255 FFIN----------NDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAG 301 + +N Q+M F K A AG++ S H +R AT + G Sbjct: 199 WLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHAFATHLLNHG 258 Query: 302 A 302 A Sbjct: 259 A 259 >gi|84517237|ref|ZP_01004592.1| Phage integrase [Loktanella vestfoldensis SKA53] gi|84508912|gb|EAQ05374.1| Phage integrase [Loktanella vestfoldensis SKA53] Length = 401 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 62/342 (18%), Positives = 117/342 (34%), Gaps = 28/342 (8%) Query: 19 GKIIYYFR----KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74 G YY R + R I+L + T A ++ +++ K L Sbjct: 41 GGRTYYLRYSDDRSKTRYIKLADAGDVTLPQARTLCERMRNKIAMGVDPLKERAG--KKL 98 Query: 75 ISEYRKSAHWGSLAVNSRISFES-------YFDQIIRKSGDFDYRKITTKHIRSGVE--- 124 + + W S S+ + S +I G +ITT+ + + + Sbjct: 99 VPTFEA-FAWNSYMPFSQANKRSWKTDETLIRTHLIPTFGKKHLDEITTEDVLNMQQAGL 157 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEY----VAINPCLSVERPKRKTEGIRPWTKEDMQ 180 P S + L +R +F A +++ V NP V K + R ++M Sbjct: 158 KAGAAPGSVNRRLILLRYMFNTAW-RDWKIAGVKENPTHGVRLLKENNKKERYVRADEMA 216 Query: 181 QFKSFW--SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVE 236 + + S+ + + FL+ +G R ++ A + + K+G + Sbjct: 217 RLYAEICSSQNTMLKHIVAFLVLTGARRNEVLHATWHDINMTTGKWRIPDTKSGYARHLP 276 Query: 237 LPDGFMKLLA-MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSA 294 L DG M +L M + + F N K + KAG+ + H +R A Sbjct: 277 LNDGAMAVLHQMRGVSRSHFIFGNPKTGKAYVHIWYAWNTARKKAGLPDVRMHDLRHTFA 336 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336 ++ + G + +E+ G + + Y L N Sbjct: 337 SLLINNGRSIYEVQKLLGHTQIKTTQRYAHLTQETLLDASNI 378 >gi|330988880|gb|EGH86983.1| integrase family protein [Pseudomonas syringae pv. lachrymans str. M301315] Length = 325 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 50/316 (15%), Positives = 107/316 (33%), Gaps = 19/316 (6%) Query: 18 HGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISE 77 +G RK + + + S + G ++ ++++ + TTLK + Sbjct: 9 NGTWRTKIRKKGYPSLSASF-DTKAEAQRWASEIEGDMSRKRFVDTREAESTTLKQALDR 67 Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQF- 136 Y + + +R K G +I + + ++R S Sbjct: 68 YER--EVSAQKKGARQEKTRIKTWAESKYGTKSMAEIRSSDLAEYRDARLAEGMSTNTVR 125 Query: 137 --LTSMRVLFKWAVRQEYVA--INPCLSVERPKRKTEGIRPWTKEDMQQ-FKSFWSEGSQ 191 L + L+ A++ + NP + PK E R T +++ K+ + ++ Sbjct: 126 LSLALISHLYTVAIKDWGIEGLSNPVTKLRMPKGSRERDRRPTAKELSAVLKAASAIHAE 185 Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIG 251 + E + + +R + +H++ ++ K G+ V L LL P Sbjct: 186 MPVIIELAIETAMRRGELMTLRREHIRGKHVLLEDTKNGSRRLVPLSIRARALLDSLPA- 244 Query: 252 KETFFINNDKQKMNAT--QFSIWFKAKATKAG-VNKSAHGVRKFSATISADAGATAHELM 308 D + + S +F A ++ H +R + + G + E Sbjct: 245 ------RIDGGVFSLSPHSVSQYFLKSCRAAKVIDLHFHDLRHEGTSRLFEKGFSIMEAA 298 Query: 309 ATYGWKTVDQAETYTK 324 + G KT+ + YT Sbjct: 299 SITGHKTMSMLKRYTH 314 >gi|222529994|ref|YP_002573876.1| integrase family protein [Caldicellulosiruptor bescii DSM 6725] gi|222456841|gb|ACM61103.1| integrase family protein [Caldicellulosiruptor bescii DSM 6725] Length = 392 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 51/323 (15%), Positives = 108/323 (33%), Gaps = 56/323 (17%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131 WL +Y+K ++ ++ +ES + I ++ + + +H++ + + KH Sbjct: 77 WL-HQYKK----NQISESTFDDYESIIKNHINPVLEKYNLKDLRPEHLQ-MLYNEKHKAG 130 Query: 132 SAIQFLTSMRVLF----KWAVRQEYVAINPCLSVERPKRKTE-GIRPWTKEDMQQFKSFW 186 + + + + V+ A++ + N + PK E ++ T E+ ++F Sbjct: 131 LSTKRIKDIHVILHSALNQAIKNGLIVRNVSEATTLPKNTREKEMKVLTIEEQKRFLQVL 190 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQ-------------KTGT 231 EG + + AF L +G+R + Q + N +I+ KT T Sbjct: 191 -EGERLKPAFVLALSTGMRLGEILALKWQDVDLENKRITIRNSVRRIKNRNEQSEIKTKT 249 Query: 232 IIT------------VELPD----------GFMKLLAMTP----IGKETFFINNDKQKMN 265 ++ + LPD + + F + Sbjct: 250 VLVLKEPKTENSGRIIPLPDVAYQELVNFKLLQEEEKRQAGSSYVDSGFVFTTKVGTPIE 309 Query: 266 ATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324 F F KAG+N + H +R AT +A + G + Y+ Sbjct: 310 PRNFLRTFYRITEKAGLNINFHALRHTFATRLLEANTNPKVVQELLGHSDISTTLNIYSH 369 Query: 325 GA-DRIRLGIKNSRRISSVVDSD 346 D + I + + ++ Sbjct: 370 VLFDTKQKAIGEINDLMKNLTNE 392 >gi|326693050|ref|ZP_08230055.1| tyrosine recombinase XerC [Leuconostoc argentinum KCTC 3773] Length = 302 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 41/277 (14%), Positives = 92/277 (33%), Gaps = 24/277 (8%) Query: 72 KWLISEYRK-SAHWGSLAV-NSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES---R 126 L +Y + + L V E++ + G YR + T +R + R Sbjct: 6 AQLYQDYLQAERQYSDLTVKAYLTDIEAFTTFLAENGGFTTYRAVQTLDVRVYLNELYER 65 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ-----Q 181 + ++ + ++S+R+ F++ + ++V+ NP +V K ++ + + ++ Sbjct: 66 QLARTTIARKISSLRMFFQFMLANQFVSDNPFENVALRKHQSHLPEFFYESELTTLFEVA 125 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVEL--- 237 + + EFL +G R ++ + L + K V Sbjct: 126 YAEDEPLWQRNAALLEFLYATGARVAEIANLTITQLDFAQRLVLIHGKGNKDRYVPFGHF 185 Query: 238 --------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AH 287 L + F+N+ + + A + K+ + + H Sbjct: 186 AAQAMTQYLHELRPQLVAKQAPHDRVFVNHRGEPITAAGITYILNELMKKSALTGTIHPH 245 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 +R AT + GA + G + + YT Sbjct: 246 MLRHTFATHLLNHGADMRTVQELLGHVNLSTTQMYTH 282 >gi|225872872|ref|YP_002754329.1| phage integrase family protein [Acidobacterium capsulatum ATCC 51196] gi|225794498|gb|ACO34588.1| phage integrase family protein [Acidobacterium capsulatum ATCC 51196] Length = 414 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 57/320 (17%), Positives = 116/320 (36%), Gaps = 35/320 (10%) Query: 58 REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ----IIRKSGDFDYRK 113 + + +++P T+K + EY A +LA ++ E+ F + + G R+ Sbjct: 63 PKAAPAKKEEPVTIKQAVDEYLADARARNLAESTLSKLETIFRKQFLAWTKSEGYTLLRE 122 Query: 114 ITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173 + + ++S + + + + + F + +R ++ +P L+++R + Sbjct: 123 LDLRAVQSFRATWRDGGLAKKKKQERLTGFFWFCIRAGWITQSPTLNLKRITVQQMPTDY 182 Query: 174 WTKED--------------MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL-Q 218 + +E+ +++ G + R + L +SGLR D+ + L Sbjct: 183 FPREEYNEIIDGTYRLDDGLERGYDVEKRGQRIRALVQLLRWSGLRIRDAVTLERERLQS 242 Query: 219 NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIG----KETFFINNDKQKMNATQFSIW-F 273 N+ + KTG + V LP + L P G FF + + +A F Sbjct: 243 NDDLLLYQAKTGVPVYVPLPHKVAEDLRNVPPGPKPNPRYFFWSGNGDPKSAVADWQRAF 302 Query: 274 KAKATKAGVNKS--------AHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYT- 323 + AG+ K H R A AG ++ G K+V E Y Sbjct: 303 RRLFEVAGLEKPDGGRKRCFPHMFRDTFAVEMLLAGVPIDQVSILLGHKSVKITEKHYAP 362 Query: 324 -KGADRIRLGIKNSRRISSV 342 A + +L + + Sbjct: 363 FVKARQEQLAASVRQAWQEM 382 >gi|253990782|ref|YP_003042138.1| site-specific tyrosine recombinase XerC [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253990786|ref|YP_003042142.1| site-specific tyrosine recombinase XerC [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|211639116|emb|CAR67728.1| Similar to integrase/recombinase [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|211639122|emb|CAR67734.1| Phage integrase [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253782232|emb|CAQ85396.1| similar to phage integrase/recombinase [Photorhabdus asymbiotica] gi|253782236|emb|CAQ85400.1| similar to phage integrase/recombinase [Photorhabdus asymbiotica] Length = 376 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 57/305 (18%), Positives = 104/305 (34%), Gaps = 32/305 (10%) Query: 64 PRKKPTTLKWLISEY---RKSAHWGS--LAVNSRISFESYFDQIIR-KSGDFDYRKITTK 117 P P +L L+ + R+ +W L V + ++ R D + + Sbjct: 24 PAHDPKSLYALLLRFVVWRQERNWSETTLKVQTHHTYRFILWATERGLYYAADITRPILE 83 Query: 118 HIRSGVESRKHT------PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171 + + + T + L ++V FKW +Q + NP +E P+ + Sbjct: 84 RYQRYLYQYRKTNGEPLSTRTQRTQLEPLKVWFKWLTKQNLILANPAADLELPRLEKHLP 143 Query: 172 R-PWTKEDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--FSI 224 R T ++ +Q + G + R E L +G+R + R V + + +I Sbjct: 144 RYILTIDETEQILAQPDLTTLQGVRDRALMELLWSTGMRRGELTRLDVYSVDGSRKTVTI 203 Query: 225 KTQKTGTIITVELPDGFMKLLAMT-----------PIGKETFFINNDKQKMNATQFSIWF 273 + K + L + + L P K F + + A S Sbjct: 204 RQGKGNKDRVLPLGERALSWLQRYQQQVRPQLIVNPDVKALFVAMDGLDGLQANGISNLV 263 Query: 274 KAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 A G+ K H R AT + GA + A G +V+ + YT+ + R Sbjct: 264 TAYINAVGIEKKGACHLFRHAMATQMLENGADLRWIQAMLGHASVESTQVYTQVSIRALQ 323 Query: 332 GIKNS 336 + S Sbjct: 324 AVHAS 328 >gi|255534753|ref|YP_003095124.1| Probable integrase [Flavobacteriaceae bacterium 3519-10] gi|255340949|gb|ACU07062.1| Probable integrase [Flavobacteriaceae bacterium 3519-10] Length = 356 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 39/266 (14%), Positives = 96/266 (36%), Gaps = 16/266 (6%) Query: 76 SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHTPS 131 +++ + ++ ++ F Q++ +++ + +R+ E+ K + S Sbjct: 86 KRFQEHLVLKGYSQSTLRTYSIEFAQLLYVLKGHPVNELSPERLRAYFLYCHENLKLSES 145 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191 + +++ F+ + + + + + RPK+K + + +K ++++ E + Sbjct: 146 EIHSRINAVKFYFEQVLHRHKMFFD----IPRPKKKQQLPKMLSKAEIKKII-LSVENPK 200 Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQKTGTIITVELPDGFMKLLAM-- 247 + + GLR S+ + + I+ K LP+ + L Sbjct: 201 HLMILKVCYGMGLRVSEVVALKLTDIDGAGKRVRIEQAKGKKDRITVLPESLLPELRAYY 260 Query: 248 -TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATA 304 K F + + FK KAG+++ HG+R AT + G Sbjct: 261 LAYRPKTFLFEGQHGGQYSVRSAQAVFKKAVEKAGIHRKLGIHGLRHSFATHLLETGTDI 320 Query: 305 HELMATYGWKTVDQAETYTKGADRIR 330 + G ++ + YT D + Sbjct: 321 RFIQELLGHNSIKTTQIYTHVTDIAK 346 >gi|255011911|ref|ZP_05284037.1| putative integrase [Bacteroides fragilis 3_1_12] gi|313149745|ref|ZP_07811938.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] gi|313138512|gb|EFR55872.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] Length = 327 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 45/279 (16%), Positives = 97/279 (34%), Gaps = 15/279 (5%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----KHT 129 LI + + + S + S IRK + + R ITT +R+ + T Sbjct: 52 LIDSFLSAKRVEGCSDKSMHYYRSTLSNAIRKI-EKNIRHITTDDLRNYLNDYQQISGAT 110 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 + + F W ++Y+ +P + + K ++ E ++Q + EG Sbjct: 111 KVTVDNIRRILSSFFAWLEDEDYIVKSPVRRIHKVKVGKTVKETYSDEALEQMRDHC-EG 169 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDG----FMKL 244 + + L +G+R + + + N I T K V + Sbjct: 170 IRDLALIDLLASTGMRVGELVKLNRNDIDFENRECIVTGKGDKQRRVYFDARTKIHLQRY 229 Query: 245 LAMTPIGKETFFIN--NDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAG 301 LA F++ ++ + I + + + K H R+ AT++ D G Sbjct: 230 LAGRIDDNSALFVSLLAPYDRLQISGVEIRLRRLGRELNIPKVHPHKFRRTLATMAIDKG 289 Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340 ++ G +++D Y ++ + + + + I Sbjct: 290 MPIEQVQHLLGHQSLDTTLQYA-MVNQTNVKMSHRKFIG 327 >gi|283797399|ref|ZP_06346552.1| putative integrase [Clostridium sp. M62/1] gi|291074952|gb|EFE12316.1| putative integrase [Clostridium sp. M62/1] Length = 408 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 47/306 (15%), Positives = 90/306 (29%), Gaps = 53/306 (17%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGV---ES 125 TL + + + + N+R+ ++ F I G + IT HIR+ + + Sbjct: 67 TLSVWFDNWLEIYKYNVIRDNTRVYYKQVFKKHIEPLLGHKRLKDITQLHIRALLKELDK 126 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + + + + ++ A+ Y NP + PK R ++ E+ F Sbjct: 127 QGLQFQTQNKVRVMLLDMYNKAILDNYAVRNPAKGIRLPKHNKRNKRVFSVEEQIDFFDC 186 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ---------------------NNIFSI 224 G+ F + +GLR + C + F I Sbjct: 187 CK-GTFYDNLFTVAVNTGLRQGELCALTWDDIDLEKKEINVEKTLLYQKLEGDTGKTFHI 245 Query: 225 KTQKTGTI-ITVELPDGFMKLLAMTPIGKETFFINNDKQK-------MNATQFSIWFKAK 276 KT T V + L I + + + T+++ + Sbjct: 246 NPPKTKTSNRKVPINKQCEIALKKQLIQRNNIISRQSAKPEKGFENLLFTTKYATPICDQ 305 Query: 277 ATKAGVNK------------------SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318 + K + H R AT +AG + + G T+ Sbjct: 306 ILIDAIKKIVNEINSVRSEIEQFEMFTPHCFRHTFATRCFEAGISPKVIQTYLGHSTLQM 365 Query: 319 A-ETYT 323 + YT Sbjct: 366 TMDLYT 371 >gi|254450019|ref|ZP_05063456.1| phage integrase [Octadecabacter antarcticus 238] gi|254450690|ref|ZP_05064127.1| phage integrase [Octadecabacter antarcticus 238] gi|254452057|ref|ZP_05065494.1| phage integrase [Octadecabacter antarcticus 238] gi|254452879|ref|ZP_05066316.1| phage integrase [Octadecabacter antarcticus 238] gi|198264425|gb|EDY88695.1| phage integrase [Octadecabacter antarcticus 238] gi|198265096|gb|EDY89366.1| phage integrase [Octadecabacter antarcticus 238] gi|198266463|gb|EDY90733.1| phage integrase [Octadecabacter antarcticus 238] gi|198267285|gb|EDY91555.1| phage integrase [Octadecabacter antarcticus 238] Length = 317 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 44/258 (17%), Positives = 84/258 (32%), Gaps = 19/258 (7%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLF 144 +L S+ S + G T ++ + + S +M + Sbjct: 39 RNLGPASQSSHLRACKRFAAWLGRSPETA-TPDDVKYFQQHLIESGVSICTRNQTMTGV- 96 Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGL 204 K+ +R + + K + +K+++++ + + R+ G+ Sbjct: 97 KFLLRVTLRRHDLVAEIFHLKEPVKVPLVLSKKEIKRILAMAPS-LKARVMLSLAYGCGM 155 Query: 205 RCSDSCRAGVQHLQNN--IFSIKTQKTGTIITVELPDGFMKLLAMT------------PI 250 R + R V + ++ I I K V LP + LL P Sbjct: 156 RAGEVVRLKVGDIDSDQEIIRIVQSKGRKDRIVMLPVDILSLLRDWWKERPTGQDKDVPA 215 Query: 251 GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELM 308 + F + ++A Q S FK A +AG+ K + H +R AT + G + Sbjct: 216 PERVLFPGYRGKHLSARQISRLFKETAREAGITKPVTLHTLRHSFATHLLERGVDIRVIQ 275 Query: 309 ATYGWKTVDQAETYTKGA 326 A G + Y A Sbjct: 276 ALLGHSKLTTTARYASVA 293 >gi|315606523|ref|ZP_07881538.1| tyrosine recombinase XerC [Prevotella buccae ATCC 33574] gi|315251929|gb|EFU31903.1| tyrosine recombinase XerC [Prevotella buccae ATCC 33574] Length = 293 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 44/278 (15%), Positives = 92/278 (33%), Gaps = 30/278 (10%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIRSGVESRKH 128 +I ++ + + + + S+ G + + + IR +ES Sbjct: 2 MIEKFLNYLKFELNRSERTVKSYGEDLRAFEEFFKNLDGHPSWESVDSDIIRDWMESMMD 61 Query: 129 TPSSA---IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK-- 183 ++A + L+++R +++A+ +E V +P V PK+K + + ++ Sbjct: 62 KGNNATSINRRLSALRSFYRFALARELVVKDPAHDVVGPKKKKPLPQFLKENEINALLDS 121 Query: 184 SFWS---EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELP 238 W + + R +G+R S+ + N+ + T K + Sbjct: 122 DMWEDTYDDMRARTIVMTFYETGMRLSELTGLRDADVDFVNHELKV-TGKRNKQRIIPFG 180 Query: 239 DGFMKLLAMTPIGKET--------FFINNDKQKMNATQFSIWFKAK----ATKAGVNKSA 286 + LA ++ FF+ + M Q K T ++ Sbjct: 181 AELAQTLADYKSLRDATERGNCGKFFLTDKGLAMQNAQVREIVKKHLSRVCTLK--KRTP 238 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R AT + A L G + E YT Sbjct: 239 HVLRHTFATAMLNHEAGLESLKRLLGHARLSTTEIYTH 276 >gi|295093615|emb|CBK82706.1| Site-specific recombinase XerD [Coprococcus sp. ART55/1] Length = 306 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 43/296 (14%), Positives = 91/296 (30%), Gaps = 31/296 (10%) Query: 74 LISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTP 130 LI Y + L + +++ Q D ++T + + K+ P Sbjct: 7 LIKNYLEYCGKQKCLDEKTLKAYKIDLKQFSDYLCSSDITNVSTSILEDYIGELHNKYKP 66 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE-RPKRKTEGIRPWTKEDMQQFKSFWSE- 188 + + + S + F + +E + NP ++ + + + ++ S E Sbjct: 67 KTVKRKIASAKAFFHYLEYKEILDRNPFNKLQIKFREPVILPKTIPLRTVETILSTIYEQ 126 Query: 189 ------------GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSI-------KTQ 227 + E L +G+R S+ C V + + I + Sbjct: 127 LNCAKTIYQRRNSLRDAAVIELLFATGMRISELCALKVNDINLYDGSILIYGKGDKERRL 186 Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--S 285 + G + + + + + FF N + + A ++ + Sbjct: 187 QIGNPSVISILNKYEVDFHSEIMNCNHFFANQSGRSLTDQTVRRMINKYTALAAIDLHIT 246 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA---DRIRLGIKNSRR 338 H R AT +A + G +++ E YT A R L K+ R Sbjct: 247 PHMFRHTFATSLLEADVDIRYIQEMLGHSSINITEIYTHVALAKQRSILATKHPRN 302 >gi|251771081|gb|EES51665.1| phage integrase family protein [Leptospirillum ferrodiazotrophum] Length = 324 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 43/279 (15%), Positives = 89/279 (31%), Gaps = 20/279 (7%) Query: 65 RKKPTTLKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRS 121 R+ P ++ L+ + + A N+ ++ + R + + Sbjct: 3 RRPPDEVERLLDRFEEELLLAKKRAPNTVTAYLTDLRTFSRHLTREGVSLLDFDGEALTP 62 Query: 122 GVESRKH-TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 +E R + S +FL+S+R ++ V +P + P+ + ++++++ Sbjct: 63 YLERRGDLSVRSRARFLSSVRAWTRFLELSG-VRKDPRETPPAPRLPRSLPKILSQDEVE 121 Query: 181 QFKS----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236 + EG + R F SGLR S+ + +++ G + Sbjct: 122 RLIEAPDPHRPEGVRDRAILSFFYASGLRVSELATITADRVDLATGALRVMGKGAKERIA 181 Query: 237 LPDGFMKLL---------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKS 285 D + L F+ D + K AG+ S Sbjct: 182 FLDERTRHLLSDYLTTVRPAFAREHPELFLARDGAPLTRQALWTLIKKHGRAAGITSPLS 241 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R AT + G + G + + E YT Sbjct: 242 PHVLRHSFATHLLEKGLDIRSIQLLLGHEDIRTTEIYTH 280 >gi|237738086|ref|ZP_04568567.1| conserved hypothetical protein [Fusobacterium mortiferum ATCC 9817] gi|229419966|gb|EEO35013.1| conserved hypothetical protein [Fusobacterium mortiferum ATCC 9817] Length = 353 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 58/306 (18%), Positives = 104/306 (33%), Gaps = 45/306 (14%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESR-- 126 T + L Y + L ++ ++ + D+I+ IT +R + Sbjct: 55 TFQSLYELYMEDMT-HRLRKHTMMTKKKIIEDKILPFFSKLKLDSITPVKVRQWQNTLIS 113 Query: 127 ----KHTPSSAIQFLTS---MRVLFKWAVRQEYVAINPCLSVE-RPKRKTEGIRPWTKED 178 K+TP S T + +F +AV+ + NPC K+K E + WT E+ Sbjct: 114 GVSIKNTPYSPTYLKTINNQLTAIFNYAVKYHNMKENPCHKAGSMGKKKAEEMIIWTPEE 173 Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK---------- 228 ++F F + F L ++G+R + ++ + +I K Sbjct: 174 FEKFSQFIKNKMPNYVGFNILFWTGIRIGELLALTLKDIDLRNKTISISKSYQRLEGEDV 233 Query: 229 ------TGTIITVELPDGFMKLLAM------TPIGKETFFINNDKQKMNATQFSIWFKAK 276 T + V +PD ++LL P F F + Sbjct: 234 ITAPKTTKSKRVVTIPDSVVELLERYLKMLYKPSKTMRLF------PYTKHLFENDLRIY 287 Query: 277 ATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK---GADRIRL 331 + KAG+ K H +R A+ + G + G + ++ Y AD L Sbjct: 288 SEKAGLKKIRIHDLRHSHASYLFNNGVDILTIAKRLGHENIETTLGIYAHTYTSADEKLL 347 Query: 332 GIKNSR 337 I N + Sbjct: 348 KILNKK 353 >gi|225028233|ref|ZP_03717425.1| hypothetical protein EUBHAL_02505 [Eubacterium hallii DSM 3353] gi|224954412|gb|EEG35621.1| hypothetical protein EUBHAL_02505 [Eubacterium hallii DSM 3353] Length = 303 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 39/277 (14%), Positives = 91/277 (32%), Gaps = 29/277 (10%) Query: 77 EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQF 136 EYRK W N+ ++ Q + + K + + + +K+ + + Sbjct: 15 EYRKELDW-----NTLKAYRIDLRQFVEFIEGEEPSKEKIERYITYLH-KKYKQKTVKRK 68 Query: 137 LTSMRVLFKWAVRQEYVAINPCLSV-ERPKRKTEGIRPWTKEDMQQF-----------KS 184 + S++V + + +E + NP V + K + R +E++++ + Sbjct: 69 IASLKVFYAYLEEEEIIEENPMRRVHTKFKEERVLPRIIPREEIEKLLNCMYKELRESEK 128 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG---------TIITV 235 + E +G R + ++++ I+ G + Sbjct: 129 NQRFILRDVAVVEVFFATGARVYEIANIRIENINLESGVIRFMGKGGKERIVQIGEESVI 188 Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFS 293 EL + + FFIN K + + K +A + + + H R Sbjct: 189 ELLNRYYTENKEEIHACGYFFINKRKSRFTEQSIRLMLKKYTKQAKIERNITPHMFRHSF 248 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 AT + G + G ++ + Y + + + Sbjct: 249 ATYLIEEGVDISCVQQILGHSSIKTTQIYIHVSSQKQ 285 >gi|171320566|ref|ZP_02909590.1| tyrosine recombinase XerC [Burkholderia ambifaria MEX-5] gi|171094193|gb|EDT39276.1| tyrosine recombinase XerC [Burkholderia ambifaria MEX-5] Length = 306 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 46/280 (16%), Positives = 90/280 (32%), Gaps = 32/280 (11%) Query: 75 ISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTP 130 I+ Y + H L+ ++ ++ D++ + + +T +R V + Sbjct: 6 IAAYLSNLKHVRQLSEHTLRAYTHELDELKKLAAGRPLDALTAVDMRGAVARAHAGGLSA 65 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQFKSFW 186 S L++ R ++W ++ + NP +V PKR + + +D M + Sbjct: 66 RSIAHRLSAWRAFYRWLAQRIEMPANPVAAVRAPKRPKTLPKALSVDDASALMDAPLAGT 125 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRA-------------GVQHLQNNIFSIKTQKTGTII 233 +EG + E SGLR ++ G L +++ K Sbjct: 126 TEGIRDHAILELFYSSGLRLAELVGLDVMYTQADGYRSAGWLDLAEAEVTVR-GKGNKER 184 Query: 234 TVELPDGFMKLLAMT--------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284 V + + L F++ +M K A AG+ Sbjct: 185 KVPVGRKAIDALNAWLAVRGEFVKHDPHPLFVSVRGNRMAPGVVRDRVKRAALAAGIPAN 244 Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 H +R AT + + G +V + YT Sbjct: 245 VHPHVLRHSFATHVLQSSGDLRAVQELLGHASVAATQVYT 284 >gi|121606322|ref|YP_983651.1| phage integrase family protein [Polaromonas naphthalenivorans CJ2] gi|120595291|gb|ABM38730.1| phage integrase family protein [Polaromonas naphthalenivorans CJ2] Length = 345 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 52/306 (16%), Positives = 99/306 (32%), Gaps = 40/306 (13%) Query: 58 REYINSPRKKPTTLKWLISEYRKSAH-WGSLAVNSRISFESYFDQI---IRKSGDF--DY 111 + + P L++ Y LA + + + +++ RK+G D Sbjct: 2 KPVPPAQDSAPEEADPLVTRYLAYVRVEKRLASRTVELYMADLEKLQANARKAGVALTDV 61 Query: 112 RKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171 + + + + SR + L+ R + W R+ V NP V PK Sbjct: 62 KHTHLRRWVAQMHSRGRSGRGIALILSGWRGFYTWLGREGLVPGNPVQDVRSPKIAKPLP 121 Query: 172 RPWTKEDMQQFKSFWSEGS--------QPRLAFEFLLYSGLRCSDSCRA---------GV 214 + + ++ Q SF E + + + E L GLR S+ G Sbjct: 122 KALSVDEAVQLASFELEATDGDPFLEARDQCITELLYGCGLRISELVGLDAQASGKARGW 181 Query: 215 QHLQNNIFSIKTQKTGTIITVEL----PDGFMKLLAMTPI----------GKETFFINND 260 +Q + K +V + K LA + G E FIN Sbjct: 182 IDMQGGDAHV-LGKGEKRRSVPVGGAALKSLHKWLAARSLWARPGADGVQGGEALFINQR 240 Query: 261 KQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318 ++ + K ++ +AG+ H +R A+ + + G ++ Sbjct: 241 GSRLTPQHIRVRLKQRSQQAGLATPVHPHMLRHSFASHVLQSSGDLRAVQELLGHASITT 300 Query: 319 AETYTK 324 + YT+ Sbjct: 301 TQAYTR 306 >gi|325269556|ref|ZP_08136172.1| site-specific tyrosine recombinase XerC [Prevotella multiformis DSM 16608] gi|324988175|gb|EGC20142.1| site-specific tyrosine recombinase XerC [Prevotella multiformis DSM 16608] Length = 297 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 41/263 (15%), Positives = 97/263 (36%), Gaps = 23/263 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFD----YRKITTKHIRSGVESRKHTPSSA---IQFL 137 + + + S+ ++ R D + + + + +R+ +E ++A + L Sbjct: 18 RNYSPMTVTSYRKDLEEFERFFQDLEEQLSWETVDSDVVRNWMEDMMDRGNAASSVNRRL 77 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS--FWSEGSQPRLA 195 +S+R +++A+R+ V +P ++ PKR+ + + +M++ W++ + LA Sbjct: 78 SSLRSFYRFALRRSLVRRDPVHGLQGPKRQKPLPQFLKESEMERLLEPGMWTDSYKDVLA 137 Query: 196 FEFLL---YSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLL------ 245 ++ +G+R S+ + + +K T K + + L Sbjct: 138 RTLIMTFYETGVRVSELTGLDDKDVDGLTCELKVTGKRDKQRIIPFGRELAETLAAYRQV 197 Query: 246 --AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAG 301 A F +M Q K ++ ++ H +R AT + Sbjct: 198 RGAAVKGDSAALFRTEKGVRMTDGQVRALVKKHLSRVSTLKKRTPHVLRHTFATAMLNHE 257 Query: 302 ATAHELMATYGWKTVDQAETYTK 324 A + G +++ E YT Sbjct: 258 AGLESVKKLLGHESLSTTEIYTH 280 >gi|296121441|ref|YP_003629219.1| tyrosine recombinase XerD [Planctomyces limnophilus DSM 3776] gi|296013781|gb|ADG67020.1| tyrosine recombinase XerD [Planctomyces limnophilus DSM 3776] Length = 315 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 50/284 (17%), Positives = 96/284 (33%), Gaps = 25/284 (8%) Query: 64 PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR---KSGDFDYRKITTKH-- 118 P P+T Y + LA N+ IS+E + +SG IT + Sbjct: 17 PTALPSTHVEGFVAYLQ--GECGLARNTVISYERDIKRFSDWFHESGVVRVTDITLQDLS 74 Query: 119 -IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177 + K S+ + L S+++ F++ + + + + + PK + +++ Sbjct: 75 GYLRYLHELKLATSTIARHLVSLKMFFRYLMLEGILKESVADLLNSPKLWEHLPKVLSED 134 Query: 178 DMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTI 232 + + + R L +G R S+ C ++ LQ + + K Sbjct: 135 AVNRLLDAPMHQDLNPYRDRALLAVLYATGCRASEVCSLKMRDLQLDEGFCRCVGKGNKE 194 Query: 233 ITVELPDGFMKLL-----AMTPIGKET-----FFINNDKQKMNATQFSIWFKAKATKAGV 282 V L + L P T F + + ++ Q K A++ G+ Sbjct: 195 RLVSLNPVAVSALKTYLARERPARAGTNLDSPVFTSRSGRSIDRIQVWKLVKRYASRIGL 254 Query: 283 --NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 + H +R AT GA L G ++ + YT Sbjct: 255 SDAVTPHTLRHSFATHMLANGAEIRALQELLGHASIRTTQIYTH 298 >gi|110639767|ref|YP_679977.1| integrase [Cytophaga hutchinsonii ATCC 33406] gi|110282448|gb|ABG60634.1| integrase [Cytophaga hutchinsonii ATCC 33406] Length = 293 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 42/276 (15%), Positives = 101/276 (36%), Gaps = 25/276 (9%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYF----DQIIRKSGDFDYRKITTKHIRSGVESRKH 128 +++E+ + + ++ +S+++ D ++ +RS + + Sbjct: 1 MVNEFLTYLSFEKRYSKHTTVSYKNDLSNLSDYLLITYELSTPEHANYPMLRSWIVTLVD 60 Query: 129 T---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 P S + + +R + + ++E++ +P L + K K +E++ Sbjct: 61 QELEPKSINRKIACLRSYYHFLQKKEFITKDPTLKIRALKVKKSLPVFVAEENITDLLDK 120 Query: 186 WS-----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPD 239 + EG + +L E L +G+R S+ + +IK K + + D Sbjct: 121 FEFADSFEGLRDKLVLELLYGTGIRLSELIGLKNADVNMFQKTIKVLGKGNKERIIPIHD 180 Query: 240 GFMKLLAMTPIGKET---------FFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHG 288 F+ L I K++ F + N+ +++ + + +S H Sbjct: 181 TFITLAKAYTIKKKSESFSNNTEFFVVTNNGEQVYPMFIYRLVRMYLDQVTTVDKRSPHV 240 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 +R AT + GA + + G ++ + YT Sbjct: 241 LRHTFATHLLNKGADLNAIKDLLGHTSLAATQVYTH 276 >gi|330952167|gb|EGH52427.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae Cit 7] Length = 299 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 37/259 (14%), Positives = 93/259 (35%), Gaps = 19/259 (7%) Query: 85 GSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIR---SGVESRKHTPSSAIQFLT 138 ++ ++ ++ ++ +K+ + + +H+R + + + S + L+ Sbjct: 16 RQVSPHTLEAYRRDLGKVLAYCQKARLSSWSDLDIQHLRSFTARQHQQGQSSRSLARMLS 75 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRL 194 ++R +K+ R+ +P + PK + + + Q E + + Sbjct: 76 AVRGFYKYLNREGICQHDPANGLSPPKGERRLPKTLDTDRTAQLLDGGVEDDFLAHRDQA 135 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV--------ELPDGFMKLLA 246 E L SGLR S+ + L ++ G+ V + + ++ L A Sbjct: 136 ILELLYSSGLRLSELTGLNLDQLDLRDGLVQVLGKGSKTRVLPVGSKARQALEVWLPLRA 195 Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAK-ATKAGVNKSAHGVRKFSATISADAGATAH 305 +T + F++ +++ + KA + G N H +R A+ ++ Sbjct: 196 LTHPQDDAVFVSLQGRRLGPRAIQVRLKAAGERELGQNLHPHMLRHSFASHLLESSQDLR 255 Query: 306 ELMATYGWKTVDQAETYTK 324 + G + + YT Sbjct: 256 AVQELLGHADIKTTQIYTH 274 >gi|254449766|ref|ZP_05063203.1| phage integrase [Octadecabacter antarcticus 238] gi|254450115|ref|ZP_05063552.1| phage integrase [Octadecabacter antarcticus 238] gi|254450532|ref|ZP_05063969.1| phage integrase [Octadecabacter antarcticus 238] gi|198264172|gb|EDY88442.1| phage integrase [Octadecabacter antarcticus 238] gi|198264521|gb|EDY88791.1| phage integrase [Octadecabacter antarcticus 238] gi|198264938|gb|EDY89208.1| phage integrase [Octadecabacter antarcticus 238] Length = 320 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 44/258 (17%), Positives = 84/258 (32%), Gaps = 19/258 (7%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLF 144 +L S+ S + G T ++ + + S +M + Sbjct: 39 RNLGPASQSSHLRACKRFAAWLGRSPETA-TPDDVKYFQQHLIESGVSICTRNQTMTGV- 96 Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGL 204 K+ +R + + K + +K+++++ + + R+ G+ Sbjct: 97 KFLLRVTLRRHDLVAEIFHLKEPVKVPLVLSKKEIKRILAMAPS-LKARVMLSLAYGCGM 155 Query: 205 RCSDSCRAGVQHLQNN--IFSIKTQKTGTIITVELPDGFMKLLAMT------------PI 250 R + R V + ++ I I K V LP + LL P Sbjct: 156 RAGEVVRLKVGDIDSDQEIIRIVQSKGRKDRIVMLPVDILSLLRDWWKERPTGQDKDVPA 215 Query: 251 GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELM 308 + F + ++A Q S FK A +AG+ K + H +R AT + G + Sbjct: 216 PERVLFPGYRGKHLSARQISRLFKETAREAGITKPVTLHTLRHSFATHLLERGVDIRVIQ 275 Query: 309 ATYGWKTVDQAETYTKGA 326 A G + Y A Sbjct: 276 ALLGHSKLTTTARYASVA 293 >gi|163815939|ref|ZP_02207309.1| hypothetical protein COPEUT_02119 [Coprococcus eutactus ATCC 27759] gi|158448749|gb|EDP25744.1| hypothetical protein COPEUT_02119 [Coprococcus eutactus ATCC 27759] Length = 306 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 43/296 (14%), Positives = 91/296 (30%), Gaps = 31/296 (10%) Query: 74 LISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTP 130 LI Y + L + +++ Q D ++T + + K+ P Sbjct: 7 LIKNYLEYCGKQKCLDEKTLKAYKIDLKQFSDYLCSSDITNVSTSILEDYIGELHNKYKP 66 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE-RPKRKTEGIRPWTKEDMQQFKSFWSE- 188 + + + S + F + +E + NP ++ + + + ++ S E Sbjct: 67 KTVKRKIASAKAFFHYLEYKEILDRNPFNKLQIKFREPVILPKTIPLHTVETILSTIYEQ 126 Query: 189 ------------GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSI-------KTQ 227 + E L +G+R S+ C V + + I + Sbjct: 127 LNCAKTIYQRRNSLRDAAVIELLFATGMRISELCALKVNDINLYDGSILIYGKGDKERRL 186 Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--S 285 + G + + + + + FF N + + A ++ + Sbjct: 187 QIGNPSVISILNKYEVDFHSEIMNCNHFFANQSGRSLTDQTVRRMINKYTALAAIDLHIT 246 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA---DRIRLGIKNSRR 338 H R AT +A + G +++ E YT A R L K+ R Sbjct: 247 PHMFRHTFATSLLEADVDIRYIQEMLGHSSINITEIYTHVALAKQRSILATKHPRN 302 >gi|300780929|ref|ZP_07090783.1| tyrosine recombinase XerD [Corynebacterium genitalium ATCC 33030] gi|300532636|gb|EFK53697.1| tyrosine recombinase XerD [Corynebacterium genitalium ATCC 33030] Length = 294 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 37/267 (13%), Positives = 85/267 (31%), Gaps = 22/267 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFD-YRKITTKHIRSGVESRKHTPSSAIQFLTSMRVL 143 + + + S + + FD + I + + + S+ + + R Sbjct: 19 KGRSEATVKGYRSDLRTLAEVAPTFDDFTLIALRGWLADAMRQGLARSTMARRTAAARSF 78 Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWT--------KEDMQQFKSFWSEGSQPRLA 195 WA + Y+ + + P+ T + ++ S E ++ R Sbjct: 79 STWAYERGYLDSDVAARLVTPQINRHLPDVVTSSRAGELVEAEIN-PDSDGPEAARDRAM 137 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLAMTPI---- 250 E + +G+R ++ V + + T K V + + Sbjct: 138 LELMYATGMRVAELTGLDVDDVDTKQGLARVTGKGNKQRVVPFGERATAAIEEWKTRRTE 197 Query: 251 -----GKETFFINNDKQKMNATQFSIWFKAKATKAG-VNKSAHGVRKFSATISADAGATA 304 F+ + +++ Q + A + G + S H +R +AT + GA Sbjct: 198 LVSDKSGHALFLGSRGGRIDQRQVRRVVERAAQRTGDTDLSPHALRHSAATHMLEGGADL 257 Query: 305 HELMATYGWKTVDQAETYTK-GADRIR 330 + G ++ + YT A R++ Sbjct: 258 RVVQELLGHSSLQTTQIYTHVSAQRLK 284 >gi|145635531|ref|ZP_01791230.1| tyrosine recombinase [Haemophilus influenzae PittAA] gi|145267194|gb|EDK07199.1| tyrosine recombinase [Haemophilus influenzae PittAA] Length = 295 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 40/260 (15%), Positives = 89/260 (34%), Gaps = 21/260 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITT------KHIRSGVESRKHTPSSAIQFLT 138 ++ ++ +++ D II+ D T + I + + + S L+ Sbjct: 16 RQMSPHTITNYQHQLDAIIKILAQQDIHAWTQVTPSVVRFILAESKKQGLKEKSLALRLS 75 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS---FWSEGSQPRLA 195 ++R + V+Q + +NP + PK+ + E +QQ + + R Sbjct: 76 ALRRFLSFLVQQGELKVNPATGISAPKQGRHLPKNMDGEQVQQLLANDSKEPIDIRDRAI 135 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------ELPDGFMKLLA 246 E + SGLR S+ + + + ++ G V + + Sbjct: 136 LELMYSSGLRLSELQGLDLNSINTRVREVRVIGKGNKERVVPFGRYASHAIQEWLKVRAL 195 Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATA 304 P E F++ +++ + + G+N + H +R AT +A + Sbjct: 196 FNP-KDEALFVSQLGNRISHRAIQKRLETWGIRQGLNSHLNPHKLRHSFATHMLEASSDL 254 Query: 305 HELMATYGWKTVDQAETYTK 324 + G + + YT Sbjct: 255 RAVQELLGHSNLSTTQIYTH 274 >gi|148267742|ref|YP_001246685.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus JH9] gi|150393800|ref|YP_001316475.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus JH1] gi|189030083|sp|A6U170|XERC_STAA2 RecName: Full=Tyrosine recombinase xerC gi|189030084|sp|A5ISD6|XERC_STAA9 RecName: Full=Tyrosine recombinase xerC gi|147740811|gb|ABQ49109.1| tyrosine recombinase XerC subunit [Staphylococcus aureus subsp. aureus JH9] gi|149946252|gb|ABR52188.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus JH1] Length = 298 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 37/266 (13%), Positives = 94/266 (35%), Gaps = 22/266 (8%) Query: 85 GSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGVE---SRKHTPSSAIQFLTS 139 + + ++ S++ Q + + + + R+ + S +S + +++ Sbjct: 16 RNFSEHTLKSYQDDLIQFNQFLEQEHLQLKTFEYRDARNYLSYLYSNHLKRTSVSRKIST 75 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLA 195 +R +++ + + INP + + PK++ + + +E+M+ E + + R+ Sbjct: 76 LRTFYEYWMTLDENIINPFVQLVHPKKEKYLPQFFYEEEMEALFKTVEEDTSKNLRDRVI 135 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVE--------LPDGFMKLL 245 E L +G+R S+ Q + N ++ K V + + Sbjct: 136 LELLYATGIRVSELVNIKKQDIDFYANGVTV-LGKGSKERFVPFGAYCRQSIENYLEHFK 194 Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATK-AGV-NKSAHGVRKFSATISADAGAT 303 + + +N + + + AGV H +R AT + GA Sbjct: 195 PIQSCNHDFLILNMKGEAITERGVRYVLNDIVKRTAGVSEIHPHKLRHTFATHLLNQGAD 254 Query: 304 AHELMATYGWKTVDQAETYTKGADRI 329 + + G + YT +++ Sbjct: 255 LRTVQSLLGHVNLSTTGKYTHVSNQQ 280 >gi|330812552|ref|YP_004357014.1| Site-specific tyrosine recombinase XerC/Sss [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|34222931|sp|Q8VS06|XERC_PSEFL RecName: Full=Tyrosine recombinase xerC gi|1929097|emb|CAA72946.1| Sss/XerC protein [Pseudomonas fluorescens] gi|27652537|gb|AAO17715.1| site-specific recombinase [Pseudomonas fluorescens] gi|327380660|gb|AEA72010.1| Site-specific tyrosine recombinase XerC/Sss [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 299 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 38/273 (13%), Positives = 95/273 (34%), Gaps = 22/273 (8%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQII-----RKSGDFDYRKITT-KHIRSGVE 124 L R ++ ++ ++ ++++ + G + I + + + + Sbjct: 5 LDAYCEHLRSE---RQVSPHTLSAYRRDLEKVLGWCQKQNIGSWAALDIQRLRSLIARLH 61 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW-TKEDMQQFK 183 + + S + L+++R L+ + R+ +P + PK + + T +Q + Sbjct: 62 QQGQSSRSLARLLSAVRGLYHYLNREGLCDHDPATGLAPPKGERRLPKTLDTDRALQLLE 121 Query: 184 SFWSEGSQPR---LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV----- 235 + R E SGLR S+ + L ++ G+ + Sbjct: 122 GAVEDDFLARRDQAILELFYSSGLRLSELTGLNLDQLDLADGMVQVLGKGSKTRLLPVGR 181 Query: 236 ---ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAK-ATKAGVNKSAHGVRK 291 E + ++ L A+T + F++ +++ + KA + G N H +R Sbjct: 182 KAREALEQWLPLRALTNPADDAVFVSQQGRRLGPRAIQLRVKAAGERELGQNLHPHMLRH 241 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTK 324 A+ ++ + G + + YT Sbjct: 242 SFASHLLESSQDLRAVQELLGHSDIKTTQIYTH 274 >gi|15924242|ref|NP_371776.1| site-specific recombinase XerC-like protein [Staphylococcus aureus subsp. aureus Mu50] gi|15926835|ref|NP_374368.1| hypothetical protein SA1095 [Staphylococcus aureus subsp. aureus N315] gi|156979573|ref|YP_001441832.1| site-specific recombinase XerC homologue [Staphylococcus aureus subsp. aureus Mu3] gi|253315609|ref|ZP_04838822.1| hypothetical protein SauraC_05582 [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|255006039|ref|ZP_05144640.2| hypothetical protein SauraM_06200 [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257795692|ref|ZP_05644671.1| tyrosine recombinase XerC [Staphylococcus aureus A9781] gi|258415916|ref|ZP_05682186.1| conserved hypothetical protein [Staphylococcus aureus A9763] gi|258421678|ref|ZP_05684602.1| tyrosine recombinase XerC [Staphylococcus aureus A9719] gi|258434834|ref|ZP_05688908.1| xerC protein [Staphylococcus aureus A9299] gi|258444590|ref|ZP_05692919.1| xerC protein [Staphylococcus aureus A8115] gi|258447577|ref|ZP_05695721.1| tyrosine recombinase xerC [Staphylococcus aureus A6300] gi|258449419|ref|ZP_05697522.1| tyrosine recombinase xerC [Staphylococcus aureus A6224] gi|258454798|ref|ZP_05702762.1| tyrosine recombinase XerC [Staphylococcus aureus A5937] gi|269202868|ref|YP_003282137.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus ED98] gi|282892740|ref|ZP_06300975.1| tyrosine recombinase XerC [Staphylococcus aureus A8117] gi|282927594|ref|ZP_06335210.1| tyrosine recombinase XerC [Staphylococcus aureus A10102] gi|295406188|ref|ZP_06815995.1| tyrosine recombinase XerC [Staphylococcus aureus A8819] gi|296274810|ref|ZP_06857317.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus MR1] gi|297244416|ref|ZP_06928299.1| tyrosine recombinase XerC [Staphylococcus aureus A8796] gi|54039882|sp|P67631|XERC_STAAN RecName: Full=Tyrosine recombinase xerC gi|54042779|sp|P67630|XERC_STAAM RecName: Full=Tyrosine recombinase xerC gi|166918904|sp|A7X1M7|XERC_STAA1 RecName: Full=Tyrosine recombinase xerC gi|13701052|dbj|BAB42347.1| xerC [Staphylococcus aureus subsp. aureus N315] gi|14247022|dbj|BAB57414.1| site-specific recombinase XerC homologue [Staphylococcus aureus subsp. aureus Mu50] gi|156721708|dbj|BAF78125.1| site-specific recombinase XerC homologue [Staphylococcus aureus subsp. aureus Mu3] gi|257789664|gb|EEV28004.1| tyrosine recombinase XerC [Staphylococcus aureus A9781] gi|257839252|gb|EEV63726.1| conserved hypothetical protein [Staphylococcus aureus A9763] gi|257842364|gb|EEV66789.1| tyrosine recombinase XerC [Staphylococcus aureus A9719] gi|257849195|gb|EEV73177.1| xerC protein [Staphylococcus aureus A9299] gi|257850083|gb|EEV74036.1| xerC protein [Staphylococcus aureus A8115] gi|257853768|gb|EEV76727.1| tyrosine recombinase xerC [Staphylococcus aureus A6300] gi|257857407|gb|EEV80305.1| tyrosine recombinase xerC [Staphylococcus aureus A6224] gi|257863181|gb|EEV85945.1| tyrosine recombinase XerC [Staphylococcus aureus A5937] gi|262075158|gb|ACY11131.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus ED98] gi|282590597|gb|EFB95674.1| tyrosine recombinase XerC [Staphylococcus aureus A10102] gi|282764737|gb|EFC04862.1| tyrosine recombinase XerC [Staphylococcus aureus A8117] gi|285816934|gb|ADC37421.1| Site-specific tyrosine recombinase [Staphylococcus aureus 04-02981] gi|294968776|gb|EFG44798.1| tyrosine recombinase XerC [Staphylococcus aureus A8819] gi|297178446|gb|EFH37692.1| tyrosine recombinase XerC [Staphylococcus aureus A8796] gi|312829646|emb|CBX34488.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315131045|gb|EFT87029.1| hypothetical protein CGSSa03_05869 [Staphylococcus aureus subsp. aureus CGS03] gi|329727078|gb|EGG63534.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus 21172] Length = 298 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 37/266 (13%), Positives = 94/266 (35%), Gaps = 22/266 (8%) Query: 85 GSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGVE---SRKHTPSSAIQFLTS 139 + + ++ S++ Q + + + + R+ + S +S + +++ Sbjct: 16 RNFSEHTLKSYQDDLIQFNQFLEQEHLQLKTFEYRDARNYLSYLYSNHLKRTSVSRKIST 75 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLA 195 +R +++ + + INP + + PK++ + + +E+M+ E + + R+ Sbjct: 76 LRTFYEYWMTLDENIINPFVQLVHPKKEKYLPQFFYEEEMEALFKTVEEDTSKNLRDRVI 135 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVE--------LPDGFMKLL 245 E L +G+R S+ Q + N ++ K V + + Sbjct: 136 LELLYATGIRVSELVNIKKQDIDFYANGVTV-LGKGSKERFVPFGAYCRQSIENYLEHFK 194 Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATK-AGV-NKSAHGVRKFSATISADAGAT 303 + + +N + + + AGV H +R AT + GA Sbjct: 195 PIQSCNHDFLILNMKGEAITERGVRYVLNDIVKRTAGVSEIHPHKLRHTFATHLLNQGAD 254 Query: 304 AHELMATYGWKTVDQAETYTKGADRI 329 + + G + YT +++ Sbjct: 255 LRTVQSLLGHVNLSTTGKYTHVSNQQ 280 >gi|196247965|ref|ZP_03146667.1| integrase family protein [Geobacillus sp. G11MC16] gi|196212749|gb|EDY07506.1| integrase family protein [Geobacillus sp. G11MC16] Length = 384 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 60/370 (16%), Positives = 126/370 (34%), Gaps = 47/370 (12%) Query: 23 YYFRKGHGRRIRLPYPHESTFIP-----AYMSALTGSTPKREYINSPRKKPTTLKWLISE 77 +YFR G+ +++F P L + + + ++ + Sbjct: 15 FYFRIDVGKDPVTGKRKQASFGPFRTKTEAKKELLKIKNQVDDGSYFKESTEDFSMFMER 74 Query: 78 YRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQF 136 + +++ ++ + + S E + I++ +ITT I S + T S Sbjct: 75 WFNTSYKRTVEITTAKSREYVIRNHIMKYFQHKKINEITTFDIDSFYVDKLDTGYSGAYI 134 Query: 137 LTS---MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193 + F AV+ V +NP + + PK K+E WT +++ +F + + S Sbjct: 135 RQMHNLLNQAFDQAVKWSLVKVNPVKNAKPPKVKSEEKITWTVDEVNRFLNLIKDSSME- 193 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSI-----------------KTQKTGTIIT 234 + + +++G+R + + N I KT+K+ I+ Sbjct: 194 IPYLLAIFTGMRRGEVLGLKWDDVDFENKKIRIKRSLCFVSGKGLIFKEPKTKKSKRQIS 253 Query: 235 VELP--DGFMKLLAMTPIGKE----------TFFINNDKQKMNATQFSIWFKAKATKAGV 282 + + K KE +D + ++ F +A V Sbjct: 254 ISQHVVNVLKKHKQKQEFQKEKLGVQYQDNNLIVCTDDGKPLDPRNLLRQFYRLIEEANV 313 Query: 283 NK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRIS 340 + S H +R ATI G + G V + Y+ +D L + + + Sbjct: 314 PRISFHDLRHTHATILMQQGENPKVVSERLGHSRVGITLDLYSHVSD--DLQEQAAEKFE 371 Query: 341 S--VVDSDDP 348 + + S +P Sbjct: 372 NALLKQSQNP 381 >gi|187934306|ref|YP_001886003.1| site-specific tyrosine recombinase XerC [Clostridium botulinum B str. Eklund 17B] gi|187722459|gb|ACD23680.1| site-specific recombinase, phage integrase family [Clostridium botulinum B str. Eklund 17B] Length = 329 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 48/281 (17%), Positives = 104/281 (37%), Gaps = 29/281 (10%) Query: 75 ISEYRKSA----HWGSLAVNSRISFESYFDQIIRKSGDFDY-RKITTKHIRSGVE----S 125 I+ Y+K + L + F++I + D D+ + I + + + + Sbjct: 35 IAAYKKDLTIFFRFMKLYRGLIKEKNTEFEEIDIRDIDDDFLKSIKLRDLYAFMSFIEKY 94 Query: 126 RKHTPSSAIQFLTSMRVLFKWAV-RQEYVAINPCLSVERPKRKTEGIRPWTKED----MQ 180 R ++ + + + +++ FK+ + + + NP + +E PK T + + Sbjct: 95 RNNSAYARARKVATLKSFFKFLQGKAKIIVDNPTIELESPKINKRQPVYLTLDQSIHLLN 154 Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240 ++ L G+R S+ C ++ ++++I +I K TV L Sbjct: 155 SLDQSNKNYARDYCILILFLNCGMRLSELCGISIEKIRDDILTII-GKGNKERTVYLNAA 213 Query: 241 FMKLL----------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAH 287 +K + P K+ F+++ + +N I K AG+ + H Sbjct: 214 CLKAIENYMRIRDDSKALPENKKFLFLSSHNKPINQRTVEIMIKKHIKNAGLTDGKYTPH 273 Query: 288 GVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGAD 327 +R +AT+ G L G + + + YT D Sbjct: 274 KLRHTAATLMYKYGEVDIRSLQNILGHENISTTQIYTHVDD 314 >gi|256841220|ref|ZP_05546727.1| tyrosine recombinase XerC [Parabacteroides sp. D13] gi|256737063|gb|EEU50390.1| tyrosine recombinase XerC [Parabacteroides sp. D13] Length = 327 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 46/279 (16%), Positives = 98/279 (35%), Gaps = 15/279 (5%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133 LI + + + S + S + IRK G + R ITT +RS + + T + Sbjct: 52 LIDIFLSAKRVEGCSDKSMHYYRSTLNNAIRKIG-KNIRHITTDDLRSYLNDYQLTSGAT 110 Query: 134 ----IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 + F W ++Y+ +P + + K ++ E ++Q + EG Sbjct: 111 KVTVDNIRRILSSFFSWLEDEDYIVKSPVRRIHKVKVGKTVKETYSDEALEQMRDHC-EG 169 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDG----FMKL 244 + + L +G+R + + + N I T K V + Sbjct: 170 IRDLALIDLLASTGMRVGELVKLNRNDIDFENRECIVTGKGDKQRRVYFDARTKIHLQRY 229 Query: 245 LAMTPIGKETFFIN--NDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAG 301 A F++ ++ + I + + + K H R+ AT++ D G Sbjct: 230 FAERIDDNPALFVSLLAPYDRLQISGVEIRLRRLGRELNIPKVHPHKFRRTLATMAIDKG 289 Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340 ++ G +++D Y ++ + + + + I Sbjct: 290 MPIEQVQHLLGHQSLDTTLQYA-MVNQTNVKMSHRKFIG 327 >gi|297559947|ref|YP_003678921.1| integrase family protein [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296844395|gb|ADH66415.1| integrase family protein [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 328 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 52/298 (17%), Positives = 96/298 (32%), Gaps = 46/298 (15%) Query: 71 LKWLISEYRKS-AHWGSLAVNSRISFESYFDQIIRK---SGDFDYRKITTK----HIRSG 122 L + + + + +LA N+ ++ + G ++ +R+ Sbjct: 12 LARVCAAFLDHLSAERALADNTLAAYRRDLRRYRAYLAGHGVLSPERVGPAQVGDFLRAL 71 Query: 123 VESRKHTP----SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 E P +SA + L ++R L ++A R+ + +P V P + Sbjct: 72 REGDADHPPLGAASAGRALAAVRGLHRFAAREGWTDADPAAEVSPPAPPMRLPKAVPLAS 131 Query: 179 MQQFKSFW-SEGSQP------------RLAFEFLLYSGLRCSDSCRAGVQHLQN------ 219 +++ G+ R E L +G R S++ V + + Sbjct: 132 VERLLDAAGPVGAPASGDRAGLLALRDRALLEVLYGTGARVSEAVGLDVDDVADAVEGDD 191 Query: 220 --NIFSIKTQKTGTIITVELPDGFMKLL-----------AMTPIGKETFFINNDKQKMNA 266 + + K G V L + L A + G F+N ++ Sbjct: 192 AVGLVRFR-GKGGRERVVPLGSHARRALSGYLVRARPGLAASGRGGPALFLNARGGRLTR 250 Query: 267 TQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 A A +AGV S H +R AT D GA + G +V + YT Sbjct: 251 QGGWGILAAVAERAGVEGVSPHTLRHSFATHLLDGGADIRVVQELLGHSSVTTTQIYT 308 >gi|207727540|ref|YP_002255934.1| tyrosine recombinase xerc 1 protein [Ralstonia solanacearum MolK2] gi|206590777|emb|CAQ56389.1| tyrosine recombinase xerc 1 protein [Ralstonia solanacearum MolK2] Length = 329 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 53/290 (18%), Positives = 93/290 (32%), Gaps = 42/290 (14%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF----DYRKITTKHIRSGVESR--- 126 I+ Y + L+ ++ ++ + R F D ++ HIRS + Sbjct: 20 IAAYLDVLKFERQLSPHTLENYTRELAVLQRLGARFATGIDLTRLLPHHIRSMIAHLHGN 79 Query: 127 KHTPSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQ 181 + S + L+ R +KW A+R+ V NP V PK + + E M+Q Sbjct: 80 GLSGRSIARALSVWRGWYKWLALREAAVTANPVDGVRAPKSPKRLPKALSVEQAVALMEQ 139 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN------------IFSIKTQKT 229 E + R E GLR S+ ++H++ + K Sbjct: 140 LPGDDPETIRDRAVNELFYSCGLRLSELVGLDLRHVKAGDYASASWLDLEAREVMVLGKG 199 Query: 230 GTIITVEL--------------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKA 275 TV + + P F++ +++ Q I K Sbjct: 200 NKYRTVPVGSKAAEALAAWLAARPQLAR-PDAAPEDAHALFLSARGKRLTQRQIQIRMKR 258 Query: 276 KATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 A AGV H +R AT + + G ++ + YT Sbjct: 259 NAIAAGVPADVHPHVLRHSFATHMLQSSGDLRAVQELLGHASIASTQVYT 308 >gi|163839570|ref|YP_001623975.1| XerD/RipX family integrase/recombinase [Renibacterium salmoninarum ATCC 33209] gi|162953046|gb|ABY22561.1| integrase/recombinase (XerD/RipX family) [Renibacterium salmoninarum ATCC 33209] Length = 312 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 45/288 (15%), Positives = 87/288 (30%), Gaps = 39/288 (13%) Query: 75 ISEYRKSAH-WGSLAVNSRISFESYFDQII-----------RKSGDFDYRKITTKHIRSG 122 + EY + LA N+ ++ + + + Sbjct: 5 LREYLQHLAVERGLAANTLAAYRRDLTRYTNFLASQGVRTPEQISRKNVTDFAQALSTGS 64 Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 + SA + + ++R + K+ + +P V P + + ++ + Sbjct: 65 DGATALGVRSAARCIVALRGMHKFWALEATTTADPASEVHPPMAGRRLPKAISVAEVTKI 124 Query: 183 KSF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN---------NIFSIKT-QK 228 + G + R EFL +G R S++ V + ++ K Sbjct: 125 LEASGSDTATGLRDRALLEFLYSTGARISEAIGLDVDDVVGANSVGNDQSGPAVVRLFGK 184 Query: 229 TGTIITVEL-----------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKA 277 V L LL+ T F+N +++ K A Sbjct: 185 GSKERIVPLGSYGARAIEAYLVRGRPLLSATGKATPALFLNVRGGRLSRQSAWAILKTAA 244 Query: 278 TKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 KA ++K S H +R AT + GA + G +V + YT Sbjct: 245 EKAEISKVVSPHTLRHSFATHLLEGGADVRVVQELLGHASVTTTQVYT 292 >gi|83748651|ref|ZP_00945669.1| Integrase/recombinase (XerC/CodV family) [Ralstonia solanacearum UW551] gi|207741931|ref|YP_002258323.1| tyrosine recombinase xerc 1 protein [Ralstonia solanacearum IPO1609] gi|83724695|gb|EAP71855.1| Integrase/recombinase (XerC/CodV family) [Ralstonia solanacearum UW551] gi|206593317|emb|CAQ60244.1| tyrosine recombinase xerc 1 protein [Ralstonia solanacearum IPO1609] Length = 329 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 53/290 (18%), Positives = 93/290 (32%), Gaps = 42/290 (14%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF----DYRKITTKHIRSGVESR--- 126 I+ Y + L+ ++ ++ + R F D ++ HIRS + Sbjct: 20 IAAYLDVLKFERQLSPHTLENYTRELAVLQRLGARFATGIDLTRLLPHHIRSMIAHLHGN 79 Query: 127 KHTPSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQ 181 + S + L+ R +KW A+R+ V NP V PK + + E M+Q Sbjct: 80 GLSGRSIARALSVWRGWYKWLALREAAVTANPVDGVRAPKSPKRLPKALSVEQAVALMEQ 139 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN------------IFSIKTQKT 229 E + R E GLR S+ ++H++ + K Sbjct: 140 LPGDDPETIRDRAVNELFYSCGLRLSELVGLDLRHVKAGDYASAGWLDLEAREVMVLGKG 199 Query: 230 GTIITVEL--------------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKA 275 TV + + P F++ +++ Q I K Sbjct: 200 NKYRTVPVGSKAAEALAAWLAARPQLAR-PDAAPEDAHALFLSARGKRLTQRQIQIRMKR 258 Query: 276 KATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 A AGV H +R AT + + G ++ + YT Sbjct: 259 NAIAAGVPADVHPHVLRHSFATHMLQSSGDLRAVQELLGHASIASTQVYT 308 >gi|255525234|ref|ZP_05392176.1| integrase family protein [Clostridium carboxidivorans P7] gi|296188719|ref|ZP_06857107.1| phage integrase [Clostridium carboxidivorans P7] gi|255511097|gb|EET87395.1| integrase family protein [Clostridium carboxidivorans P7] gi|296046983|gb|EFG86429.1| phage integrase [Clostridium carboxidivorans P7] Length = 330 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 49/248 (19%), Positives = 96/248 (38%), Gaps = 25/248 (10%) Query: 106 SGDFD---YRKITTKHIRSGVE----SRKHTPSSAIQFLTSMRVLFKWAVRQ-EYVAINP 157 GD D RKIT + + + R+++ + + + +++ FK+ + + + NP Sbjct: 68 IGDIDNSLLRKITLADLYAFLSFTEKYRQNSTYARARKVATLKSFFKFLSSRAKVIDENP 127 Query: 158 CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQ 215 + +E PK T ++ + S ++ R L GLR S+ C + Sbjct: 128 AVDLESPKISKRNPTYLTLDESKSLLKAVSGRNKERDYCIITLFLNCGLRLSELCSINIS 187 Query: 216 HLQNNIFSIKTQKTGTIITVELPDGFMKLLAM----------TPIGKETFFINNDKQKMN 265 +++ +I ++ K TV L + +K L I K+ FI+ + +M+ Sbjct: 188 NIKGDILTVI-GKGNKERTVYLNNACIKALNNYLKVRSENIDKIIDKDVLFISKNHTRMS 246 Query: 266 ATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAET 321 + K A ++ + H +R +AT+ G L G + V + Sbjct: 247 KRTVEVMLKKHLINAELDSEKYTPHKLRHTAATLMYKYGNVDIRSLQKILGHENVSTTQI 306 Query: 322 YTKGADRI 329 YT D Sbjct: 307 YTHVDDEK 314 >gi|284045117|ref|YP_003395457.1| integrase [Conexibacter woesei DSM 14684] gi|283949338|gb|ADB52082.1| integrase family protein [Conexibacter woesei DSM 14684] Length = 313 Score = 110 bits (276), Expect = 3e-22, Method: Composition-based stats. Identities = 47/280 (16%), Positives = 96/280 (34%), Gaps = 30/280 (10%) Query: 85 GSLAVNSRISFE-------SYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFL 137 A +R ++ + D D + R + + +G+ P++ + L Sbjct: 32 RGAAEKTRHAYAVDGGQFVRWADAHRLAPADVNPRAL--RRYAAGLTEAGQAPTTVGRKL 89 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPR 193 S+R LF+ V + NP + P++ ++ + + R Sbjct: 90 ASLRSLFRTLVEHGELQQNPADLLSAPRKAQRLPYVLKPVEVAALLDRIPADTALALRDR 149 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-ELPDGFMKLLA------ 246 FE SGLR + V ++ + ++ + G + + +K +A Sbjct: 150 ALFELAYASGLRAEELVMLDVGSIEFDGERVRVEGKGAKTRIVPAGEPALKAIARYLDRA 209 Query: 247 ----MTPIGKETFFINNDKQKMNATQFSIWFKAKAT-KAGV----NKSAHGVRKFSATIS 297 T F++ ++++ + + A AGV S H +R AT Sbjct: 210 RPALATAESDGALFLSKSGRRLSTSDVRRRLRVWARQAAGVSTAGGVSPHALRHSFATHL 269 Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGAD-RIRLGIKNS 336 + GA + G ++ + YT+ R+R NS Sbjct: 270 LENGADLRSIQELLGHASISTTQVYTRVESARLRSAYANS 309 >gi|288926256|ref|ZP_06420181.1| tyrosine recombinase XerD [Prevotella buccae D17] gi|288336947|gb|EFC75308.1| tyrosine recombinase XerD [Prevotella buccae D17] Length = 293 Score = 110 bits (276), Expect = 3e-22, Method: Composition-based stats. Identities = 44/278 (15%), Positives = 91/278 (32%), Gaps = 30/278 (10%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIRSGVESRKH 128 +I ++ + + + + S+ G + + + IR +ES Sbjct: 2 MIEKFLNYLKFELNRSERTVKSYGEDLRAFEEFFKNLDGHPSWESVDSDIIRDWMESMMD 61 Query: 129 TPSSA---IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK-- 183 ++A + L+++R +++A+ +E V +P V PK+K + + ++ Sbjct: 62 KGNNATSINRRLSALRSFYRFALARELVVKDPAHDVVGPKKKKPLPQFLKENEINALLDS 121 Query: 184 SFWS---EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELP 238 W + + R +G+R S+ + N+ + T K + Sbjct: 122 DMWEDTYDDMRARTIVMTFYETGMRLSELTGLRDADVDFVNHELKV-TGKRNKQRIIPFG 180 Query: 239 DGFMKLLAMTPIGKET--------FFINNDKQKMNATQFSIWFKAK----ATKAGVNKSA 286 LA ++ FF+ + M Q K T ++ Sbjct: 181 AELAHTLADYKSLRDATERGNCGKFFLTDKGLAMQNAQVREIVKKHLSRVCTLK--KRTP 238 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R AT + A L G + E YT Sbjct: 239 HVLRHTFATAMLNHEAGLESLKRLLGHARLSTTEIYTH 276 >gi|330984816|gb|EGH82919.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv. lachrymans str. M301315] Length = 290 Score = 110 bits (276), Expect = 3e-22, Method: Composition-based stats. Identities = 37/259 (14%), Positives = 93/259 (35%), Gaps = 19/259 (7%) Query: 85 GSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIR---SGVESRKHTPSSAIQFLT 138 ++ ++ ++ ++ +K+ + + +H+R + + + S + L+ Sbjct: 7 RQVSPHTLEAYRRDLGKVLAYCQKAQLSSWNDLDIQHLRSFTARQHQQGQSSRSLARMLS 66 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRL 194 ++R +K+ R+ +P + PK + + + Q E + + Sbjct: 67 AVRGFYKYLNREGICQHDPANGMSPPKGERRLPKTLDTDRTAQLLDGGVEDDFLAHRDQA 126 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV--------ELPDGFMKLLA 246 E L SGLR S+ + L ++ G+ V + + ++ L A Sbjct: 127 ILELLYSSGLRLSELTGLNLDQLDLRDGLVQVLGKGSKTRVLPVGSKARQALEIWLPLRA 186 Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAK-ATKAGVNKSAHGVRKFSATISADAGATAH 305 +T + F++ +++ + KA + G N H +R A+ ++ Sbjct: 187 LTNPQDDAVFVSQQGKRLGPRTIQVRLKAAGERELGQNLHPHMLRHSFASHLLESSQDLR 246 Query: 306 ELMATYGWKTVDQAETYTK 324 + G + + YT Sbjct: 247 AVQELLGHADIKTTQIYTH 265 >gi|323143041|ref|ZP_08077746.1| phage integrase, N-terminal SAM-like domain [Succinatimonas hippei YIT 12066] gi|322417182|gb|EFY07811.1| phage integrase, N-terminal SAM-like domain [Succinatimonas hippei YIT 12066] Length = 307 Score = 110 bits (276), Expect = 3e-22, Method: Composition-based stats. Identities = 46/275 (16%), Positives = 100/275 (36%), Gaps = 28/275 (10%) Query: 89 VNSRISFESYFDQII-------------RKSGDFDYRKITTKHIRSGVESRKHTPSSAIQ 135 N+ S++ + + + G+ + R + + S R + S A Sbjct: 23 PNTVASYDRVLRKALVSLKYNFPQLKSWSEIGEKEMRFLLKEFNFSFDAERLSSVSVA-H 81 Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS---QP 192 + ++ FK+ ++++ ++ NPC + PK + + + ++ Q + + Sbjct: 82 DIYALSSFFKFLIKKKKLSSNPCSLIHAPKVRKPLPKVLSSNEIDQLFTVDPSSPKEIRD 141 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIG 251 R E L SGLR + + L ++ K G +V + + + + Sbjct: 142 RAIAELLFSSGLRVGELVALNLGDLDETAQEVRVFGKGGKERSVPVGSQALNWIRIYLKV 201 Query: 252 KETF-------FINNDKQKMNATQFSIWFKAKATKAG--VNKSAHGVRKFSATISADAGA 302 ++ F F+N ++M A+K+G + S H +R AT GA Sbjct: 202 RDAFNPEDTALFLNRFGRRMTTRAVQQNLDKLASKSGLSIKISPHKLRHSFATELLGNGA 261 Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 + G ++ + YT + +L S+ Sbjct: 262 DLRMVQEMLGHSSLAATQVYTH-INFAKLQEIFSK 295 >gi|295135108|ref|YP_003585784.1| tyrosine type site-specific recombinase [Zunongwangia profunda SM-A87] gi|294983123|gb|ADF53588.1| tyrosine type site-specific recombinase [Zunongwangia profunda SM-A87] Length = 363 Score = 110 bits (276), Expect = 3e-22, Method: Composition-based stats. Identities = 48/257 (18%), Positives = 92/257 (35%), Gaps = 11/257 (4%) Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFL 137 Y +V++ ++ ++F++ I D + IR ++S S Sbjct: 98 YLLKLELKRYSVSTIKTYVTFFEKFINHYSQRDIDSLDECEIRLFLQSLIQENKSNSYIN 157 Query: 138 TSMRVL-FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF 196 ++ + F + V N +ERP+R+ + ++E++ + + R Sbjct: 158 QAINAIKFYYEVVCGM--PNRFYDMERPRREHRLPQVISREEIFAIIEN-TNNIKHRCIV 214 Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTIITVELPDGFMKLLAMTPIG--- 251 E L SGLR S+ +Q + + IK K L + + L Sbjct: 215 ELLYSSGLRRSELLNLKLQDIDSKRMLIKIKAGKGNKDRFTILSEKCLAHLRQYYRKWKP 274 Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMA 309 + F ++ + K ++KA NK S H +R AT ++G ++ Sbjct: 275 EIYLFEGQPGKQYSGASVLKVVKNASSKAKPNKNISPHILRHSFATHLLESGVDLRKIQV 334 Query: 310 TYGWKTVDQAETYTKGA 326 G + E YT A Sbjct: 335 LLGHGSTKTTEIYTHVA 351 >gi|238925026|ref|YP_002938542.1| integrase/recombinase-like protein [Eubacterium rectale ATCC 33656] gi|259710431|sp|C4ZGY6|XERC_EUBR3 RecName: Full=Tyrosine recombinase xerC gi|238876701|gb|ACR76408.1| integrase/recombinase-like protein [Eubacterium rectale ATCC 33656] Length = 306 Score = 110 bits (276), Expect = 3e-22, Method: Composition-based stats. Identities = 42/280 (15%), Positives = 94/280 (33%), Gaps = 28/280 (10%) Query: 75 ISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPS 131 IS Y + L + ++ Q + D KI + + +E K+ P Sbjct: 8 ISSYLEYCLAQKRLDEKTIKAYRIDLIQFYNEISISDPCKIASYDLEKYIEKMHLKYKPK 67 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT-EGIRPWTKEDMQQF-------K 183 S + + S++ F + + + NP ++ R+ + +++F + Sbjct: 68 SVRRKIASIKAFFHYLEYKNIILQNPFNKIQIHFREPVILPKTIPLYIVEKFLFTIYKQR 127 Query: 184 SFWSEGSQPRLAF------EFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTII-- 233 S Q R A E L +G+R S+ C + + + + I + + I Sbjct: 128 SAAKTNYQKRNALRDAAIVELLFSTGIRISELCNLKISDVNLIDGVILIYGKGSKERILQ 187 Query: 234 -----TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SA 286 + + + + FF + + ++ A+ + ++ + Sbjct: 188 IGNSSVLNILKEYKNDFYNEIVQCNHFFSSQSGKPLSDQSVRRMINKYASLSSIDLHITP 247 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 H R AT +A + G +++ + YT A Sbjct: 248 HMFRHTFATSLLEADVDIRYIQEMLGHSSINITQIYTHVA 287 >gi|171056822|ref|YP_001789171.1| integrase family protein [Leptothrix cholodnii SP-6] gi|170774267|gb|ACB32406.1| integrase family protein [Leptothrix cholodnii SP-6] Length = 312 Score = 110 bits (276), Expect = 3e-22, Method: Composition-based stats. Identities = 37/270 (13%), Positives = 84/270 (31%), Gaps = 31/270 (11%) Query: 85 GSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIR---SGVESRKHTPSSAIQFLTS 139 LA + + + ++ + + ++ H+R + + + P S L + Sbjct: 23 RRLAPRTLTMYGAALLRLEHAAAEQQLALTQVRPPHVRRWAAMLHGQGLGPRSIAIHLAA 82 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS------QPR 193 R L++W R+ V+ NP + PK + ++ + + Sbjct: 83 WRGLYRWLGREGQVSANPVDGLRPPKAGRPLPKALAVDEAVVLADHHDPATDPLLDLRDH 142 Query: 194 LAFEFLLYSGLRCSDSCRA---------GVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244 E L GLR ++ G L+ + K V + + Sbjct: 143 AMTELLYGCGLRAAELIGLDCIAGPDAAGWIDLEGGDAQV-LGKGSNRRIVPVGPPAVAA 201 Query: 245 LAM--------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294 + G+ F++ ++ +Q +A AG+ + H +R A Sbjct: 202 VQAWLAVRHQMARAGELALFVSRRGTRLTDSQLRRRLAQRAQSAGLTSHVHPHMLRHSYA 261 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTK 324 + + + G + + YT+ Sbjct: 262 SHLLQSSGDLRAVQELLGHAQISTTQVYTR 291 >gi|320353406|ref|YP_004194745.1| integrase family protein [Desulfobulbus propionicus DSM 2032] gi|320121908|gb|ADW17454.1| integrase family protein [Desulfobulbus propionicus DSM 2032] Length = 350 Score = 110 bits (276), Expect = 3e-22, Method: Composition-based stats. Identities = 59/324 (18%), Positives = 110/324 (33%), Gaps = 19/324 (5%) Query: 35 LPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRIS 94 + ++ +A + K + PR+ TL Y ++ A+ ++ Sbjct: 27 ISRTFDTKGEARIWAAEMEAEMKNQRFKDPRRAHRTLDEAFDRYLETVT-SQKALTTQER 85 Query: 95 FESYFDQIIRKSG-DFDYRKITTKHIRSGVESRKHTPSSAIQFLTSM---RVLFKWAVRQ 150 + K G + IT + + R + S+ L + K Sbjct: 86 ERRIAKLLKEKFGRNTLLPDITPSVVAKYRDQRLKSVSAYAVRLELALLSHLFIKACKEW 145 Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA--FEFLLYSGLRCSD 208 E NP S+ERPK I +++ + RL LL++ +R S+ Sbjct: 146 ELPIENPVKSIERPKVPKGRIFFLKEDEAVRLLKECKASRNKRLYPYVLILLHTAMRPSE 205 Query: 209 SCRAGVQHLQNNIFSIKTQKTG-TIITVELPDG---FMKLLAMTPIGKETFFINNDKQK- 263 + + + S+ T TV L ++ L T E F+ + + Sbjct: 206 AAGLKWHQIDFDRRSLTLYITKNEPRTVPLTKTVITALEDLKKTAFDNEFVFLKGEGKSQ 265 Query: 264 ----MNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318 + +++F F +A + H +R +A+ AG L A G T+ Sbjct: 266 HAQNIPSSRFRPSFDRARERAKLPLLHMHDLRHTAASQMLMAGTDIRTLAAILGHSTLQM 325 Query: 319 AETYTKGADRIRLGIKNSRRISSV 342 YT + +L K RI+S+ Sbjct: 326 VLRYTHLLNEHKL--KAVDRINSL 347 >gi|319641592|ref|ZP_07996279.1| hypothetical protein HMPREF9011_01877 [Bacteroides sp. 3_1_40A] gi|317386792|gb|EFV67684.1| hypothetical protein HMPREF9011_01877 [Bacteroides sp. 3_1_40A] Length = 386 Score = 110 bits (276), Expect = 3e-22, Method: Composition-based stats. Identities = 46/303 (15%), Positives = 100/303 (33%), Gaps = 26/303 (8%) Query: 39 HESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSA-----HWGSLAVNSRI 93 ++ F+ Y +R + Y + + + Sbjct: 88 EDTPFLEYYRK----MVEERHKNPESEGNWGNWRS-CLRYLEIYCDEKTTFKDITPEFIN 142 Query: 94 SFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYV 153 F+ + + + + + +++ + R + + +S + + +R A + + Sbjct: 143 GFKDFLNNVEKDT----HKRTGPRRERDVF--QGLSQNSKVSYFNKLRACINQAYDERII 196 Query: 154 AINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAG 213 +NP +E K T E+++Q + + AF F +GLR SD + Sbjct: 197 PVNPLRGIEGFKAAEVKRDYLTLEEVKQLAATPCRYPILKRAFLFSCLTGLRKSDIQKLT 256 Query: 214 VQHL----QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF 269 + K +KTG +++ K L ++ F + + Sbjct: 257 WSEVQKFGDYTRIVFKQKKTGGQEYLDISSQAEKYLGERGNPEDPVFTGFTYGAWTSLEL 316 Query: 270 SIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 W + A +NK + H R A + D GA + + G K + + Y K D Sbjct: 317 QRW----SMAANINKNLTFHCGRHTFAVLMLDLGADIYTVSKLLGHKELATTQIYAKVLD 372 Query: 328 RIR 330 + + Sbjct: 373 KNK 375 >gi|295696553|ref|YP_003589791.1| integrase family protein [Bacillus tusciae DSM 2912] gi|295412155|gb|ADG06647.1| integrase family protein [Bacillus tusciae DSM 2912] Length = 305 Score = 110 bits (276), Expect = 3e-22, Method: Composition-based stats. Identities = 44/276 (15%), Positives = 87/276 (31%), Gaps = 20/276 (7%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRK 127 T + E+ + + + ++ ++ D D + + R+ Sbjct: 5 TWQDAFQEFLLCKQAEGRSPLTLRDYHNHVPAFFQEHPDTWPDVHALKRAVVAHFAGLRE 64 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG-IRPWTKEDMQQFKSFW 186 + + ++ F W VR+EY+ NP + PKRK +G R + +++ Sbjct: 65 RSATHYNLRREYLKAFFSWCVREEYLPKNPVDGI--PKRKNDGTPRNLDDQTLKRLLELP 122 Query: 187 S----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK----TQKTGTIITVELP 238 G + L +G+R ++ + H + T KT T TV + Sbjct: 123 DKSTYAGVRDHALVLLQLDTGIRPGEALQLLPAHFNLGALEVTVPSATAKTRTARTVVMS 182 Query: 239 DGFMKLLAMTP-------IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRK 291 K + F + M+ + GV + + +R Sbjct: 183 PQTAKAIRRLLSVRPADWTDDVPVFATYSGRPMDRNMWGKRLAQYGRTLGVRITPYMLRH 242 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 SA + G L G ++ + Y AD Sbjct: 243 SSALMFLRGGGHVFALQRQLGHTSLVMTKRYVHLAD 278 >gi|255764498|ref|YP_003065000.2| site-specific tyrosine recombinase XerD [Candidatus Liberibacter asiaticus str. psy62] gi|254547849|gb|ACT57060.2| site-specific tyrosine recombinase XerD [Candidatus Liberibacter asiaticus str. psy62] Length = 300 Score = 110 bits (276), Expect = 3e-22, Method: Composition-based stats. Identities = 42/267 (15%), Positives = 92/267 (34%), Gaps = 30/267 (11%) Query: 88 AVNSRISFESYFDQIIRKSGDFD--YRKITTKHIRSGVE---SRKHTPSSAIQFLTSMRV 142 ++N+ +++ ++ + + +T H+ S + RK SS + ++ +R Sbjct: 9 SINTLSAYKRDLKEMQNFLNNKEISLSAASTNHLISYLNHLSQRKLVTSSQRRKISVIRQ 68 Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS-----------Q 191 + + + NP ++E PK+ + K+ + + + Sbjct: 69 FYNFLCYEGLRKDNPSDTLELPKKNHILPKTLHKDTIANLLEQAKIEAENPAPGQWKRVR 128 Query: 192 PRLAFEFLLYSGLRCSDSCRA--GVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTP 249 L E L +G+R S+ +L I+ + + + P L Sbjct: 129 IFLLIELLYATGMRVSELVTLSAHTLNLTERTMIIQGKGNKERLVILSPSALHALQMYKK 188 Query: 250 I-------GKETFFI--NNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKFSATIS 297 G + + + ++ F+ KA A +AG+ K S H +R A+ Sbjct: 189 TCSSMKMTGNDLWLFPSSTKTGHLSRQVFARDLKALAARAGIQKKNISPHIIRHAFASHL 248 Query: 298 ADAGATAHELMATYGWKTVDQAETYTK 324 + GA + G + + YT Sbjct: 249 LEGGADLRTIQILLGHTDISTTQIYTH 275 >gi|148273162|ref|YP_001222723.1| site-specific tyrosine recombinase XerD [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147831092|emb|CAN02037.1| integrase/recombinase [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 328 Score = 110 bits (276), Expect = 3e-22, Method: Composition-based stats. Identities = 47/297 (15%), Positives = 88/297 (29%), Gaps = 32/297 (10%) Query: 60 YINSPRKKPTTLKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH 118 ++ + P L+ + + + L+ N+ ++ + D Sbjct: 12 APDAVPEVPVALRRAVDRWLRHVEVERGLSRNTLQAYRRDLARYTAHLADEGVADPADAS 71 Query: 119 IRSGV---------ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169 E T SS + L+S+R ++ V + V ++ PK + Sbjct: 72 AAHIAAFAQRVRDPEHGGLTASSLARMLSSVRSFHRFLVEEGIVEVDVSAEQRPPKLPSR 131 Query: 170 GIRPWTKEDMQQFKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----- 220 + + E M + + + E L +G R S+ V + Sbjct: 132 LPKAVSIETMGRILDATDGDEPLRVRDKALLELLYATGARVSEITALTVDDVLGADGAAA 191 Query: 221 IFSIKTQKTGTIITVELPDGFMK-----------LLAMTPIGKETFFINNDKQKMNATQF 269 K G V + + +LA F+ ++ Sbjct: 192 ELVRVLGKGGKQRIVPVGSFARRAVDAYLVRVRPILAARGSATPALFLGLRGHALSRQNA 251 Query: 270 SIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 + KA A +AGV S H R AT GA + G +V + YT+ Sbjct: 252 WLVIKAAAERAGVAEEISPHTFRHSFATHLIAGGADVRVVQELLGHSSVATTQIYTR 308 >gi|119869601|ref|YP_939553.1| phage integrase family protein [Mycobacterium sp. KMS] gi|119695690|gb|ABL92763.1| phage integrase family protein [Mycobacterium sp. KMS] Length = 300 Score = 110 bits (276), Expect = 3e-22, Method: Composition-based stats. Identities = 37/286 (12%), Positives = 90/286 (31%), Gaps = 20/286 (6%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISF----ESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126 L L+ ++ + A + ++ ++ K + + Sbjct: 8 LADLLPSWQLALRSEGKAPGTIKTYTDGVAAFLRWCAATDTPPAITKPAVQGFIGDLLDG 67 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 ++A+ +R +W + + +P + ++RP + + + + + ++ Sbjct: 68 GAESATAVARFKGVRQFARWMADEGEIDGDPLVGLKRPAQVRKVVPALSDDQLRALLDAC 127 Query: 187 S----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDG 240 + + + +G+R ++ V + + ++ K V Sbjct: 128 RGKTLKHRRDEAIVRLMAETGMRAAELLGLTVADVDLTRGLAIVRRGKGSKGRVVPFGPQ 187 Query: 241 FMKLLAM---------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVR 290 L ++ + K +A AG+ N AH +R Sbjct: 188 TGAALDRYVRSARRENRLTDHGPLWVGAGGKTFGYHGLDGTLKERAAAAGIANFHAHRLR 247 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336 +AT AG + LMA GW T + YT + R +++ Sbjct: 248 HTAATRWLRAGGSEQGLMAVAGWSTRAMIDRYTGASAAERAAVESR 293 >gi|68637890|emb|CAI36095.1| XerD-like site-specific recombinase [Pseudomonas syringae pv. phaseolicola] Length = 319 Score = 110 bits (276), Expect = 3e-22, Method: Composition-based stats. Identities = 51/276 (18%), Positives = 106/276 (38%), Gaps = 31/276 (11%) Query: 84 WGSLA-VNSRISFESYFDQIIRKSGDF---DYRKITTKHI---RSGVESRKHTPSSAIQF 136 + +L +R ++++ G D+R++T H+ R+ +E R ++ + Sbjct: 33 FANLDNPRTRRAYQNDLTDFSSFIGLASADDFRQVTRSHVLAWRADLEHRGLAGATIRRK 92 Query: 137 LTSMRVLFKWAVRQE-YVAINPCLSVERPKRKT-EGIRPWTKED-----MQQFKSFWSEG 189 L ++ LF + NP V+RP+ +T EG P + ++ + +G Sbjct: 93 LAALASLFDHLLENNAVAGGNPVHGVKRPRIETNEGKTPALGDHQAKQLLEAPDTETLKG 152 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTII-TVELPDGFMKLLA 246 + R LLY GLR ++ + L + I ++ G+ + + L + + Sbjct: 153 LRDRAILAVLLYHGLRREEAAQLKTGDLQERRGIKHLRVHGKGSKVRFLPLHPVAAERIY 212 Query: 247 M---TPIGKET----FFINNDKQ----KMNATQFSIWFKAKATKAGV---NKSAHGVRKF 292 + ++T F + + A +A A KAG+ + HG+R Sbjct: 213 AYLEQDVERDTAPGPLFRSLRGTTTGAGITANGIYTVVEAYAKKAGIVVEHLGVHGLRAT 272 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 +AT + + A ++ G + Y + R Sbjct: 273 AATNALEHDADIAKVQMWLGHANISTTRLYDRRGQR 308 >gi|317486704|ref|ZP_07945521.1| phage integrase [Bilophila wadsworthia 3_1_6] gi|316922087|gb|EFV43356.1| phage integrase [Bilophila wadsworthia 3_1_6] Length = 339 Score = 110 bits (276), Expect = 3e-22, Method: Composition-based stats. Identities = 44/284 (15%), Positives = 90/284 (31%), Gaps = 44/284 (15%) Query: 85 GSLAVNSRISFESYFDQI-----IRKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQF 136 + + ++ + Q + ++ H + SS + Sbjct: 26 KGFSPATISAYRTDLLQFEEWLHREQHSLARPGELEKYHFQDYSAHLFHEGQARSSIGRK 85 Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----------- 185 L+++R LF++ ++ + + NP V PKR+ + M Sbjct: 86 LSALRSLFRYLMKMKKIDKNPAKLVRNPKRELRHPTALNVDQMFTLLDEASVESGGAAGL 145 Query: 186 --------------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231 + ++ E L SGLR S++ V + I+ G+ Sbjct: 146 DGSRQAEQTVTDREHAGHTRDLALAELLYGSGLRISEALDLDVDDVDPASGFIRVIGKGS 205 Query: 232 IITV-ELPD--------GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282 + L D + P ++ F+ N +++N Q + AG+ Sbjct: 206 KERIAPLSDTSVRALFLWLRVRALIAPPAEKALFVGNRGKRLNRRQAARILDEIRKSAGL 265 Query: 283 --NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 + S H +R AT + GA + G ++ + YT Sbjct: 266 PQHLSPHTLRHTFATHMLENGADMRSVQELLGHASLSTTQRYTH 309 >gi|120600505|ref|YP_965079.1| tyrosine recombinase XerC [Shewanella sp. W3-18-1] gi|146294663|ref|YP_001185087.1| tyrosine recombinase XerC [Shewanella putrefaciens CN-32] gi|166918902|sp|A4YBF5|XERC_SHEPC RecName: Full=Tyrosine recombinase xerC gi|166918903|sp|A1RPD0|XERC_SHESW RecName: Full=Tyrosine recombinase xerC gi|120560598|gb|ABM26525.1| tyrosine recombinase XerC [Shewanella sp. W3-18-1] gi|145566353|gb|ABP77288.1| tyrosine recombinase XerC [Shewanella putrefaciens CN-32] gi|319427899|gb|ADV55973.1| tyrosine recombinase XerC [Shewanella putrefaciens 200] Length = 302 Score = 110 bits (276), Expect = 3e-22, Method: Composition-based stats. Identities = 37/274 (13%), Positives = 92/274 (33%), Gaps = 20/274 (7%) Query: 76 SEYRKSAHWGSLAVNSRISFESYFDQIIRKSG-DFDYRKITTKHIR---SGVESRKHTPS 131 Y S L+ ++ ++ +++ D + +H + + + + +P Sbjct: 16 ERYLHSER--QLSAHTVHNYLYELNRVSTLLPKDVTLLNVGREHWQQVLAKLHRKGLSPR 73 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR---PWTKEDMQQFKSFWSE 188 S L++++ ++ +R+ +A+NP + PK+ + + + + + Sbjct: 74 SLSLCLSAIKQWGEFLLREGMIAVNPAKGLSAPKQAKPLPKNMDVDSLTHLLEIEGTDPL 133 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAM 247 + + E SGLR ++ + +Q ++ ++ K V + +K L Sbjct: 134 TLRDKAMMELFYSSGLRLAELAALNLSSVQYDLREVRVLGKGNKERIVPVGSYAIKALEA 193 Query: 248 T-------PIGKETFFINNDKQKMNATQFSIWFKAK--ATKAGVNKSAHGVRKFSATISA 298 P F+ ++++ V H +R AT Sbjct: 194 WLVCRQQIPCEDCALFVTGKGRRLSHRSIQSRMAKWGQEQALSVRVHPHKLRHSFATHML 253 Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 ++ A + G + + YT D L Sbjct: 254 ESSADLRAVQELLGHANLSTTQIYT-SLDFQHLA 286 >gi|220912958|ref|YP_002488267.1| integrase [Arthrobacter chlorophenolicus A6] gi|219859836|gb|ACL40178.1| integrase family protein [Arthrobacter chlorophenolicus A6] Length = 295 Score = 110 bits (276), Expect = 3e-22, Method: Composition-based stats. Identities = 42/280 (15%), Positives = 99/280 (35%), Gaps = 28/280 (10%) Query: 85 GSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIRSGVESRKHT---PSSAIQFLT 138 +L+ ++R ++ + G + + +R + ++ + ++ + Sbjct: 12 RALSPHTRRAYLGDLESLLAFAASEGAAELEDLELGTLRRWLGAQSQSGAARATLARRSA 71 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS-------- 190 ++R WA+R+EY+ +P L ++ PKR+ +++ +G+ Sbjct: 72 TIRAFTAWALREEYLEADPALRLKAPKREQSLPGVLQAPQLERLLKELEDGAADGDPMAV 131 Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT---------IITVELPDGF 241 + R E L +G+R + V +L + +++ G + + D Sbjct: 132 RNRAIVELLYATGIRVGELAALDVDNLDPDRRTLRVIGKGNKERTVPYGVPAALAVDDWL 191 Query: 242 MKL--LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATIS 297 + L F+ +++ Q G + H +R +AT Sbjct: 192 RRGRPLMAKDTSGPALFLGLRGGRVDQRQVRSVVHGLFEAMGDTSASGPHALRHSAATHL 251 Query: 298 ADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNS 336 D GA + G ++ + YT DR+R + + Sbjct: 252 LDGGADLRAVQEILGHSSLATTQIYTHVSVDRLRKSYQQA 291 >gi|126176181|ref|YP_001052330.1| tyrosine recombinase XerC [Shewanella baltica OS155] gi|125999386|gb|ABN63461.1| tyrosine recombinase XerC [Shewanella baltica OS155] Length = 306 Score = 110 bits (276), Expect = 3e-22, Method: Composition-based stats. Identities = 33/271 (12%), Positives = 90/271 (33%), Gaps = 21/271 (7%) Query: 72 KWL--ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD-FDYRKITTKHIR---SGVES 125 +WL Y + L+ ++ ++ ++ D + ++ +H + + + Sbjct: 14 QWLQTFERYLSTER--QLSAHTVRNYLYELNRGSDLLPDGVNLLNVSREHWQQVLAKLHR 71 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + +P S L++++ ++ +R+ + +NP + PK+ + + + Sbjct: 72 KGLSPRSLSLCLSAVKQWGEFLLREGVIELNPAKGLSAPKQAKPLPKNIDVDAISHLLDI 131 Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT--------IIT 234 + + E SGLR ++ + +Q ++ ++ G + Sbjct: 132 EGTDPLSLRDKAMMELFYSSGLRLAELAALNLSSVQYDLKEVRVLGKGNKERIVPVGRLA 191 Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAK--ATKAGVNKSAHGVRKF 292 + ++ P F+ ++++ V H +R Sbjct: 192 IAALLNWLNCRKQIPCEDNALFVTEKGKRLSHRSIQARMAKWGQEQALSVRVHPHKLRHS 251 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYT 323 AT +A A + G + + YT Sbjct: 252 FATHMLEASADLRAVQELLGHANLATTQIYT 282 >gi|313900576|ref|ZP_07834069.1| site-specific recombinase, phage integrase family [Clostridium sp. HGF2] gi|312954638|gb|EFR36313.1| site-specific recombinase, phage integrase family [Clostridium sp. HGF2] Length = 356 Score = 110 bits (276), Expect = 3e-22, Method: Composition-based stats. Identities = 46/326 (14%), Positives = 120/326 (36%), Gaps = 17/326 (5%) Query: 24 YFRKGHGR--RIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKS 81 Y RK R + ++ +E+ + + S + Y + T + + E+ S Sbjct: 36 YKRKDGMRHQKRKIIGYYETEEMAEF-SLWNYNKNPALYAEIEKLGTITFENVYMEW-SS 93 Query: 82 AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMR 141 + +++ + +++ + + + + H + ++ + SS ++ + M Sbjct: 94 TKYRNISQTAINGYKAAYAR-CSSIWNVRMSDLRAMHFQRIMDESTLSLSSDLKLRSLMM 152 Query: 142 VLFKWAVRQEYVAINPCLSV--ERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFL 199 ++ ++AV+ + + N V R + E +P+T+ ++++ + + Sbjct: 153 LVCEYAVQNDIIQKNYAKYVIINRKEDHPEIHKPFTEWEIEKLFDHENIPFVD--TILIM 210 Query: 200 LYSGLRCSDSCRAGVQHLQNNIFSIKTQKT---GTIITVELPDGFMKLLAMTPIGKETFF 256 +Y+G R + + + +I+ G V + + K + + + Sbjct: 211 IYTGFRVGELFNIRREDVDVQNMTIRGGSKIEAGKNRLVPVHEKIQKYVMDYYLQGHEYL 270 Query: 257 INN--DKQKMNATQFSIW-FKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGW 313 I++ ++K N + F + H R AT ++ GA + + G Sbjct: 271 ISDADTRKKFNYHMYRNQYFDKIMDMLEMEHLPHDCRHTFATRLSNYGANSTCIKKLIGH 330 Query: 314 KTVDQAE-TYT-KGADRIRLGIKNSR 337 + E YT K ++R I + Sbjct: 331 SSYTTTEKIYTHKDVAQLRRAISTLK 356 >gi|264680261|ref|YP_003280171.1| phage integrase [Comamonas testosteroni CNB-2] gi|262210777|gb|ACY34875.1| phage integrase [Comamonas testosteroni CNB-2] Length = 348 Score = 110 bits (276), Expect = 3e-22, Method: Composition-based stats. Identities = 42/292 (14%), Positives = 89/292 (30%), Gaps = 41/292 (14%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQI--IRKSGDFDYRKITTKHIRSGVESR---K 127 ++ Y + LA + + ++ ++ + + HIR Sbjct: 19 VVHSYLEHVRVQKRLAERTHTLYALDLIKLQSFAQAAAQELLTLQPSHIRRFAAQMHGAG 78 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + L+ R F+WA ++E V NP V PK + +D Q SF + Sbjct: 79 RSARGIALILSGWRSFFRWAAQRELVPFNPVEGVRGPKAAKPLPKALAVDDAVQLASFHN 138 Query: 188 E------GSQPRLAFEFLLYSGLRCSDSCRAGV------QHLQNNIFSIK------TQKT 229 ++ E L GLR ++ + +H ++ K Sbjct: 139 PEADPWMEARDVAMTELLYSCGLRVAELVGLDLRPDQQSRHEGRGWIDLEAGDAHVQGKG 198 Query: 230 GTIITVELPDGFMKLLAM---------------TPIGKETFFINNDKQKMNATQFSIWFK 274 V + ++ L + F+ ++++A K Sbjct: 199 SKRRIVPVGRMAIEALQRWLALRSSALVGTAQLKAQDEAALFVGRRGERLSAQSVWSRLK 258 Query: 275 AKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 + +AG+ H +R A+ + + G ++ + YT+ Sbjct: 259 QRGQQAGLATGVHPHVLRHSFASHMLQSSGDLRAVQELLGHSSIATTQIYTR 310 >gi|219871693|ref|YP_002476068.1| putative site-specific tyrosine recombinase XerC [Haemophilus parasuis SH0165] gi|219691897|gb|ACL33120.1| possible site-specific tyrosine recombinase XerC [Haemophilus parasuis SH0165] Length = 261 Score = 110 bits (276), Expect = 3e-22, Method: Composition-based stats. Identities = 36/239 (15%), Positives = 83/239 (34%), Gaps = 16/239 (6%) Query: 102 IIRKSGDFDYRKITTKHIRSGV---ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPC 158 +++++ ++++ +R + + + S L ++R + V+Q + +NP Sbjct: 1 MLQQAEVTRWQELDASTVRWILSQSHKQGLSAKSIGLRLVALRQFLAFLVKQGELKVNPT 60 Query: 159 LSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQ 215 L ++ PK + E + Q + + E + SGLR S+ + Sbjct: 61 LGIKSPKANKHLPKNIDAEQIGQLLNIDSNEPLDLRDVAMMELMYSSGLRLSELQGLDLG 120 Query: 216 HLQNNIFSIKT-QKTGTIITVEL----PDGFMKLLAMT---PIGKETFFINNDKQKMNAT 267 + ++ K V + D + LA+ F+N +++ Sbjct: 121 DMDLPNREVRLLGKGNKERIVPIGSKALDAIEQWLAVRGQFHPKDNAVFLNQRGGRLSHR 180 Query: 268 QFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 + K K ++ H +R AT +A + G ++ + YT Sbjct: 181 SIQLAMKKWGQKQALDTHLHPHKLRHSFATHMLEASQDLRAVQELLGHSSLSTTQIYTH 239 >gi|225012642|ref|ZP_03703077.1| integrase family protein [Flavobacteria bacterium MS024-2A] gi|225003175|gb|EEG41150.1| integrase family protein [Flavobacteria bacterium MS024-2A] Length = 298 Score = 110 bits (275), Expect = 3e-22, Method: Composition-based stats. Identities = 40/264 (15%), Positives = 99/264 (37%), Gaps = 28/264 (10%) Query: 88 AVNSRISFESYFDQIIR----KSGDFDYRKITTKHIRSGVES---RKHTPSSAIQFLTSM 140 +++++ +++S +Q + +++ IRS + S + ++ + + ++ + Sbjct: 17 SLHTQKAYQSNLEQFEAFLLSEGSKASLEEVSYSEIRSWIVSLIQKGNSTRTVNRKISVL 76 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS--FWS---EGSQPRLA 195 R +K+ +R + +P + K T+ P++++++ Q + G + Sbjct: 77 RSYYKFLMRTGSIDSSPLKEHKALKMATQVQLPFSQDEVAQLLDSGHFPDSYLGVLQKTI 136 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFM---------KLL 245 Y+G+R S+ + ++ + IK K + L ++ Sbjct: 137 LSLFYYTGIRRSELIELKLLNVDLSKGLIKVLGKRNKERLIPLLPEIKVELQLMLDCQVR 196 Query: 246 AMTPIGKETFFINNDKQKMN----ATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAG 301 + FF K+ + +F +TK +S H +R AT D G Sbjct: 197 NNIDREEGLFFTTQQGFKLTDSFVYATVNDYFSKVSTK--TKRSPHVLRHSFATHLLDQG 254 Query: 302 ATAHELMATYGWKTVDQAETYTKG 325 A + + G ++ + YT Sbjct: 255 ADLNSIKDLLGHSSIAATQHYTHS 278 >gi|110635391|ref|YP_675599.1| site-specific tyrosine recombinase XerD [Mesorhizobium sp. BNC1] gi|110286375|gb|ABG64434.1| tyrosine recombinase XerD subunit [Chelativorans sp. BNC1] Length = 308 Score = 110 bits (275), Expect = 3e-22, Method: Composition-based stats. Identities = 48/292 (16%), Positives = 99/292 (33%), Gaps = 34/292 (11%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYF---DQIIRK--SGDFDYRKITTKHIRSGVES 125 I + + + N+ S+ D + G F + + + + Sbjct: 4 GAKIEAFLEMMAAERGASDNTLASYRRDLGDADAYLEAPCGGVFKASAADIRKYLADMTA 63 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 R ++ + L+S+R FK+ + +P ++ PK+ + ++ +M Sbjct: 64 RGFASTTQARKLSSLRQFFKFLYSEGMRDDDPTGVLDSPKKGRPLPKTLSESEMNALLER 123 Query: 186 W-------SEGSQPRLA-------FEFLLYSGLRCSDSCRAGVQ-HLQNNIFSIKTQKTG 230 G+ R+A E L SGLR S+ ++ L++ F K G Sbjct: 124 AADEAREAPAGTPARVAAQRLSTLLEMLYASGLRVSELVSLPLRVALRDERFFTVRGKGG 183 Query: 231 TIITVELPDGFMKLLAMT-------PIGKETFFIN---NDKQKMNATQFSIWFKAKATKA 280 V L + +A+ P + ++ + ++ F+ K A +A Sbjct: 184 KERMVPLSAKAREAVALWLKERARHPSFANSPWLFPAVSASGYLSRQVFARELKGLAGRA 243 Query: 281 GV---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 G+ S H +R A+ GA + G + + YT ++ Sbjct: 244 GISTAKISPHVLRHAFASHLLQNGADLRAVQQLLGHADISTTQIYTHVLEKR 295 >gi|254520505|ref|ZP_05132561.1| phage integrase [Clostridium sp. 7_2_43FAA] gi|226914254|gb|EEH99455.1| phage integrase [Clostridium sp. 7_2_43FAA] Length = 390 Score = 110 bits (275), Expect = 3e-22, Method: Composition-based stats. Identities = 48/365 (13%), Positives = 115/365 (31%), Gaps = 53/365 (14%) Query: 26 RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWG 85 R G+ IR + T + + K + + TL+ + + Sbjct: 30 RNTEGKLIR-KQFYGKT-KREVLDKMNDYRDKSSRGLIAKDEKITLEEWYNIWLFQFKAN 87 Query: 86 SLAVNSRISFESYFDQIIR--KSGDFDYRKITT---KHIRSGVESRKHTPSSAIQFLTSM 140 L ++ + ++ I+ G + +T ++ + + TP + ++ Sbjct: 88 ELKASTIERYNVFYRNYIKGCNIGQVKLKDLTAPIIQNYYNSLIKNGKTPYTVKMLHKAL 147 Query: 141 RVLFKWAVRQEYVAINPCLSVERPK---RKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFE 197 + +A R Y+ IN C +V PK + + + +T E+ ++F + + + RL F Sbjct: 148 KSSLSYAKRINYIGINCCDNVIPPKVINKDDDKFKVFTLEEQKKFMNVIKDH-KYRLMFI 206 Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP------------------- 238 L +G+R + + + ++K K+ + +E+ Sbjct: 207 LALGTGIRIGELVALKWDDINFDECTLKVNKSISRSYIEIEGKRKFLLEETTPKTRSSIR 266 Query: 239 -------------------DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK 279 D + F + + + S + Sbjct: 267 EVGIPSNILKELINHRKEQDEYKDNYKEIYTDNNYVFTDALGRYILPDTLSKAYLKVLKD 326 Query: 280 AGVNKS-AHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGADRIRLGIKNSR 337 + + H +R AT + G + G ++ A+ YT + I Sbjct: 327 NNIPHTRFHSLRHTYATRLFEKGVPLKTVQKLLGHSSIKITADIYTHVIGNEK--ISAVE 384 Query: 338 RISSV 342 +++ + Sbjct: 385 KLNDL 389 >gi|254796542|ref|YP_003081378.1| tyrosine recombinase XerD [Neorickettsia risticii str. Illinois] gi|254589779|gb|ACT69141.1| tyrosine recombinase XerD [Neorickettsia risticii str. Illinois] Length = 301 Score = 110 bits (275), Expect = 3e-22, Method: Composition-based stats. Identities = 43/265 (16%), Positives = 86/265 (32%), Gaps = 20/265 (7%) Query: 85 GSLAVNSRISFE---SYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMR 141 + +N+ S+ ++K G D K + + +++ + ++ + + R Sbjct: 20 RNATLNTISSYRTDLRLLGAFLKKKGLKDASKEDLYGYIADLRAQQLSNATIRRKTATFR 79 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP----RLAFE 197 F + ++ + NP ++E PK+ R TKE++ +F G E Sbjct: 80 QFFSFLYSEKISSGNPAQTLELPKKTLVLPRYLTKEEVLSLLTFLETGQPATLRLYAILE 139 Query: 198 FLLYSGLRCSDSCRAGVQHLQ----NNIFSIKTQKTGTIITVELPDG----FMKLLAMTP 249 L SG+R S+ + ++ I K + L Sbjct: 140 ILYSSGMRVSELINMKISDIRPLLNGQQHIIIVGKGRKERILPFSKKAIQVLKLYLTSYQ 199 Query: 250 IGKETFFINNDK--QKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATA 304 F + + M+ + K A K ++ S H +R AT D G Sbjct: 200 SNSPWLFPGAGRKDRPMSRQRLGQLLKELALKCSIDPKRISPHVIRHSFATHLLDNGMDI 259 Query: 305 HELMATYGWKTVDQAETYTKGADRI 329 + G + + YT + Sbjct: 260 KVVQDLLGHAQITTTQIYTHISQNK 284 >gi|237722683|ref|ZP_04553164.1| mobilizable transposon [Bacteroides sp. 2_2_4] gi|229448493|gb|EEO54284.1| mobilizable transposon [Bacteroides sp. 2_2_4] Length = 386 Score = 110 bits (275), Expect = 3e-22, Method: Composition-based stats. Identities = 46/303 (15%), Positives = 100/303 (33%), Gaps = 26/303 (8%) Query: 39 HESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSA-----HWGSLAVNSRI 93 ++ F+ Y +R + Y + + + Sbjct: 88 EDTPFLEYYRK----MVEERHKNPESDGNWGNWRS-CLRYLEIYCDEKTTFKDITPEFIN 142 Query: 94 SFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYV 153 F+ + + + + + +++ + R + + +S + + +R A + + Sbjct: 143 GFKDFLNNVEKDT----HKRTGPRRERDVF--QGLSQNSKVSYFNKLRACINQAYDERII 196 Query: 154 AINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAG 213 +NP +E K T E+++Q + + AF F +GLR SD + Sbjct: 197 PVNPLRGIEGFKAAEVKRDYLTLEEVKQLAATPCRYPILKRAFLFSCLTGLRKSDIQKLT 256 Query: 214 VQHL----QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF 269 + K +KTG +++ K L ++ F + + Sbjct: 257 WSEVQKFGDYTRIVFKQKKTGGQEYLDISSQAEKYLGERGNPEDLVFTGFTYGAWTSLEL 316 Query: 270 SIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 W + A +NK + H R A + D GA + + G K + + Y K D Sbjct: 317 QRW----SMAANINKNLTFHCGRHTFAVLMLDLGADIYTVSKLLGHKELATTQIYAKVLD 372 Query: 328 RIR 330 + + Sbjct: 373 KNK 375 >gi|160889618|ref|ZP_02070621.1| hypothetical protein BACUNI_02044 [Bacteroides uniformis ATCC 8492] gi|156860610|gb|EDO54041.1| hypothetical protein BACUNI_02044 [Bacteroides uniformis ATCC 8492] Length = 379 Score = 110 bits (275), Expect = 3e-22, Method: Composition-based stats. Identities = 40/207 (19%), Positives = 77/207 (37%), Gaps = 14/207 (6%) Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVE---RPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191 +L ++R AV ++Y+ +NP ++ +PKR T +++ + + Sbjct: 165 YYLKTLRYCLNRAVSEDYITVNPMNKIKNEDKPKRNRTERDYLTIKELTRLVHTPFYNTL 224 Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQ-----NNIFSIKTQKTGTIITVELPDGFMKLLA 246 R AF F + GLR D + ++ N + SI +KT I++ L + + Sbjct: 225 LRKAFLFSCFCGLRHCDIIALRWEDIRYDENGNALLSIIQKKTKEAISLPL---CSEAIK 281 Query: 247 MTPIGKETFFINNDKQKMNATQFSIWF-KAKATKAGVNK--SAHGVRKFSATISADAGAT 303 P + + S +AG++K + H R AT+ G Sbjct: 282 HLPDRGNAPETEKVFAGLVSLGRSNVILHKWVEQAGISKHVTFHTARHTHATMMLTLGVD 341 Query: 304 AHELMATYGWKTVDQAETYTKGADRIR 330 + + G + + Y K D + Sbjct: 342 LYTVSKLLGHTNIQTTQIYAKLVDESK 368 >gi|301382613|ref|ZP_07231031.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv. tomato Max13] gi|302063357|ref|ZP_07254898.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv. tomato K40] gi|302133632|ref|ZP_07259622.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv. tomato NCPPB 1108] gi|331017919|gb|EGH97975.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 290 Score = 110 bits (275), Expect = 3e-22, Method: Composition-based stats. Identities = 36/259 (13%), Positives = 92/259 (35%), Gaps = 19/259 (7%) Query: 85 GSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIR---SGVESRKHTPSSAIQFLT 138 ++ ++ ++ ++ +K+ + + +H+R + + + S + L+ Sbjct: 7 RQVSPHTLEAYRRDLSKVLAYCQKARLSSWNDLDIQHLRSFTARQHQQGQSSRSLARMLS 66 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRL 194 ++R +K+ R+ +P + PK + + + Q E + + Sbjct: 67 AVRGFYKYLNREGLCQHDPANGLSPPKGERRLPKTLDTDRTAQLLDGGVEDDFLAHRDQA 126 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV--------ELPDGFMKLLA 246 E L SGLR S+ + L ++ G+ V + + ++ L A Sbjct: 127 IMELLYSSGLRLSELTGLNLDQLDLRDGLVQVLGKGSKTRVLPVGSKARQALETWLPLRA 186 Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAK-ATKAGVNKSAHGVRKFSATISADAGATAH 305 +T + F++ +++ + K + G N H +R A+ ++ Sbjct: 187 LTNPQDDAVFVSQQGKRLGPRAVQLRIKTAGERELGQNLHPHMLRHSFASHLLESSQDLR 246 Query: 306 ELMATYGWKTVDQAETYTK 324 + G + + YT Sbjct: 247 AVQELLGHADIKTTQIYTH 265 >gi|285019335|ref|YP_003377046.1| tyrosine recombinase [Xanthomonas albilineans GPE PC73] gi|283474553|emb|CBA17054.1| probable tyrosine recombinase protein [Xanthomonas albilineans] Length = 296 Score = 110 bits (275), Expect = 3e-22, Method: Composition-based stats. Identities = 37/257 (14%), Positives = 81/257 (31%), Gaps = 17/257 (6%) Query: 85 GSLAVNSRISFESYFDQIIRKSGD------FDYRKITTKHIRSGVESRKHTPSSAIQFLT 138 ++ ++ ++ + + D + + R +P S + L+ Sbjct: 19 RRMSAHTLDAYRRDLAALTTWAADNLLGEPAALGAEQLRQFIAAEHRRGLSPKSLQRRLS 78 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQPRLA 195 + R + W ++ ++ +P ++ PK + + ++ + G + R Sbjct: 79 ACRSFYVWLLKHGHIEASPAAALRAPKAPRKLPQVLDADEAVRLVEVPTDVPLGLRDRAL 138 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMT-----P 249 E SGLR S+ C + L + K G V + K L+ Sbjct: 139 LELFYSSGLRLSELCALRWRDLDAASGLVSVHGKGGKQRLVPIGSHARKALSEWREEHCA 198 Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHEL 307 F + A I K A + G+ + H +R A+ ++ + Sbjct: 199 DAAAPVFPGRGGVPIGARAVQIRIKQLAARQGLFKHVHPHMLRHSFASHILESSGDLRGV 258 Query: 308 MATYGWKTVDQAETYTK 324 G + + YT Sbjct: 259 QELLGHADIATTQIYTH 275 >gi|84517223|ref|ZP_01004578.1| Phage integrase [Loktanella vestfoldensis SKA53] gi|84508898|gb|EAQ05360.1| Phage integrase [Loktanella vestfoldensis SKA53] Length = 401 Score = 110 bits (275), Expect = 3e-22, Method: Composition-based stats. Identities = 66/355 (18%), Positives = 122/355 (34%), Gaps = 28/355 (7%) Query: 6 RLPPFVTKERTRHGKIIYYFR----KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYI 61 R + E G YY R + R I+L + T A + Sbjct: 28 RRAKGLALEVRISGGRTYYLRYSDDRSKTRYIKLADAGDVTLPQARTLCERMRNKIAMGV 87 Query: 62 NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFES-------YFDQIIRKSGDFDYRKI 114 + +++ K L+ + W S S+ + S +I G +I Sbjct: 88 DPLKERAG--KKLVPTFEA-FAWNSYMPFSQANKRSWKTDETLIRTHLIPAFGKKHLDEI 144 Query: 115 TTKHIRSGVE---SRKHTPSSAIQFLTSMRVLFKWAVRQEY----VAINPCLSVERPKRK 167 TT+ + S + P S + L +R +F A +++ V NP V K Sbjct: 145 TTEDVLSMQQAGLKAGAAPGSVNRRLILLRYMFNTAW-RDWKIAGVKENPTHGVRLLKEN 203 Query: 168 TEGIRPWTKEDMQQFKSFW--SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFS 223 + R ++M + + S+ + + FLL +G R ++ A Q + + Sbjct: 204 NKKERYVRADEMARLYAEICSSQNTMLKHVVAFLLLTGARRNEVLHATWQDINLTTGKWR 263 Query: 224 IKTQKTGTIITVELPDGFMKLLA-MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282 I K+G + L DG M +L M + + + N K + +AG+ Sbjct: 264 IPDTKSGYARHLPLNDGAMAVLHQMQGVSRSQYIFGNPKTGKPYVHIYYAWDTARRRAGL 323 Query: 283 -NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336 + H +R A++ + G + +E+ G + + Y L N Sbjct: 324 PDVRMHDLRHTFASLLINNGRSIYEVQKLLGHTQIKTTQRYAHLTQETLLDASNI 378 >gi|313887245|ref|ZP_07820939.1| putative ribosomal subunit interface protein [Porphyromonas asaccharolytica PR426713P-I] gi|312923298|gb|EFR34113.1| putative ribosomal subunit interface protein [Porphyromonas asaccharolytica PR426713P-I] Length = 413 Score = 110 bits (275), Expect = 3e-22, Method: Composition-based stats. Identities = 49/303 (16%), Positives = 107/303 (35%), Gaps = 28/303 (9%) Query: 68 PTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-----QIIRKSGDFDYRKITTKHIRSG 122 TL+ I R + + + ++ + S ++ +R+ Sbjct: 17 EQTLEAFIEYLRLE---RNASPLTLTTYRPAITSYMECALELASDEWQPSDADRDLVRNW 73 Query: 123 VESRKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179 + + T ++ + L++++ +K+ + V NP + PKR+ T+ + Sbjct: 74 IMQQMDDELTSTTVNKNLSAVKSFYKYLQLRGVVDNNPTRYLRGPKREHTLPSFLTQAQI 133 Query: 180 QQFKSFWS------EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TI 232 ++ + RL E + +GLR ++ Q + S++ G Sbjct: 134 EEALETIPTDPEDFLAVRNRLIIETIYQTGLRRAEVASLETQQVDLASMSLRVVGKGRKE 193 Query: 233 ITVELPDGFMKLLAMTPIGKE-------TFFINNDKQKMN-ATQFSIWFKAKATKAGVNK 284 V + + + KE FF+ + ++ A + + KA G+ + Sbjct: 194 RIVPFGEALKEQMKAYLTLKERKVGQSRYFFVTLKCRPLSGADVYQVVHKALDVVPGLPR 253 Query: 285 S-AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKNSRRISSV 342 AH +R AT +AGA + G ++ YT + ++++ R S Sbjct: 254 RGAHTLRHSFATEMLNAGAPITSIKELLGHSNLETTTRYTHTSFEQLKQLYHAHPRAQSQ 313 Query: 343 VDS 345 V S Sbjct: 314 VPS 316 >gi|322435641|ref|YP_004217853.1| integrase family protein [Acidobacterium sp. MP5ACTX9] gi|321163368|gb|ADW69073.1| integrase family protein [Acidobacterium sp. MP5ACTX9] Length = 352 Score = 110 bits (275), Expect = 3e-22, Method: Composition-based stats. Identities = 57/338 (16%), Positives = 114/338 (33%), Gaps = 22/338 (6%) Query: 4 SLRLPPFV--TKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYI 61 + + P V ER + + K R R + I Y T + Sbjct: 3 TRKAPAKVRGVYEREPGSGVWWICYKQGTVRKREKVGRKGDAIELYRQRKTELRAGAKLA 62 Query: 62 NSPRKKPTTLKWLISEYRK-SAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120 + R K T L E SA + + + + + G +T + I Sbjct: 63 PNLRHKGVTFGVLAEEALAWSAEFHPKDIKTVMGRMKMLTG---EFGLVAASDLTPQMID 119 Query: 121 SGVESRKHT------PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174 S + + P++ ++ + ++++ +R V NP V +R Sbjct: 120 SWLTDYRTKGKNVLAPATKNRYRALISLVYRQGMRNGKVKANPARLVAARAENNARVRYL 179 Query: 175 TKEDMQQFKSFWSEGSQPRL-AFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQKTGT 231 ++ + ++ G + A + L SG+R S+ + + K G+ Sbjct: 180 LPDEEKALRTAMENGRLCYIPALDVALNSGMRLSEQFSLTWEAIDFGRKEIVLDETKNGS 239 Query: 232 IITVELPD----GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSA 286 + + F L+ + F + + +N + WF+A A +AG+ + + Sbjct: 240 SRHIPMNSTCEAAFRSLVVAGQKPADRVFSSRHGKAINTPR--KWFEASAEEAGITDLTW 297 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R + A AG + G KT+ A Y+ Sbjct: 298 HSLRHTFCSRLAMAGVDIRTIAQLAGHKTLAMAMRYSH 335 >gi|153002474|ref|YP_001368155.1| tyrosine recombinase XerC [Shewanella baltica OS185] gi|151367092|gb|ABS10092.1| tyrosine recombinase XerC [Shewanella baltica OS185] Length = 306 Score = 110 bits (275), Expect = 3e-22, Method: Composition-based stats. Identities = 33/271 (12%), Positives = 88/271 (32%), Gaps = 21/271 (7%) Query: 72 KWL--ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD-FDYRKITTKHIRS---GVES 125 +WL Y + L+ ++ ++ ++ D ++ +H + + Sbjct: 14 QWLQTFERYLSTER--QLSAHTVRNYLYELNRGSDLLPDGVHLLNVSREHWQQVLSKLHR 71 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + +P S L++++ ++ +R+ + +NP + PK+ + + + Sbjct: 72 KGLSPRSLSLCLSAVKQWGEFLLREGVIELNPAKGLSAPKQAKPLPKNIDVDAISHLLDI 131 Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT--------IIT 234 + + E SGLR ++ + +Q ++ ++ G + Sbjct: 132 EGTDPLSLRDKAMMELFYSSGLRLAELAALNLSSVQYDLKEVRVLGKGNKERIVPVGRLA 191 Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAK--ATKAGVNKSAHGVRKF 292 + ++ P F+ ++++ V H +R Sbjct: 192 IAALQNWLNCRKQIPCEDNALFVTEKGKRLSHRSIQARMAKWGQEQALSVRVHPHKLRHS 251 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYT 323 AT +A A + G + + YT Sbjct: 252 FATHMLEASADLRAVQELLGHANLATTQIYT 282 >gi|319764396|ref|YP_004128333.1| tyrosine recombinase xerc [Alicycliphilus denitrificans BC] gi|330826617|ref|YP_004389920.1| tyrosine recombinase XerC [Alicycliphilus denitrificans K601] gi|317118957|gb|ADV01446.1| tyrosine recombinase XerC [Alicycliphilus denitrificans BC] gi|329311989|gb|AEB86404.1| tyrosine recombinase XerC [Alicycliphilus denitrificans K601] Length = 320 Score = 110 bits (275), Expect = 3e-22, Method: Composition-based stats. Identities = 40/304 (13%), Positives = 86/304 (28%), Gaps = 41/304 (13%) Query: 57 KREYINSPRKKPTTLKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKIT 115 + E P+ P L +Y + LA + + ++ + D + Sbjct: 2 QPETPQPPQLPPEAL-----QYLEHVRVEKRLAARTLTLYTLDLQRLAAFAADAGLPLLR 56 Query: 116 -----TKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170 + + + + + L+ R + WA RQ V NP V PK Sbjct: 57 LTGAHVRRFVAQMHAAGRSGRGIALILSGWRGFYAWAARQGLVPHNPVQDVRAPKAPKPL 116 Query: 171 IRPWTKEDMQQFKSFWSEG------SQPRLAFEFLLYSGLRCSDSCRAGV------QHLQ 218 + ++ + G ++ E L GLR + V Sbjct: 117 PKALPVDEAVRLAEHEESGADPWLEARDAAIVELLYGCGLRVGELVGLDVAPSPAAHQQG 176 Query: 219 NNIFSIKT------QKTGTIITVELPDGFMKLLA----------MTPIGKETFFINNDKQ 262 ++ K +V + + L F+ Sbjct: 177 RGWIDLQAGEAHVFGKGAKRRSVPVGRAAAEALRGWLAVRAQPFGGAAADAALFVGRRGA 236 Query: 263 KMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320 +++A + + ++ +AG+ H +R A+ + + G + + Sbjct: 237 RLSAQSVWLRLRQRSQRAGLTTPVHPHMLRHSFASHLLQSSGDLRAVQELLGHANITTTQ 296 Query: 321 TYTK 324 YT+ Sbjct: 297 VYTR 300 >gi|294787035|ref|ZP_06752289.1| site-specific recombinase, phage integrase family [Parascardovia denticolens F0305] gi|315226683|ref|ZP_07868471.1| tyrosine recombinase XerC [Parascardovia denticolens DSM 10105] gi|294485868|gb|EFG33502.1| site-specific recombinase, phage integrase family [Parascardovia denticolens F0305] gi|315120815|gb|EFT83947.1| tyrosine recombinase XerC [Parascardovia denticolens DSM 10105] Length = 334 Score = 110 bits (275), Expect = 3e-22, Method: Composition-based stats. Identities = 54/315 (17%), Positives = 102/315 (32%), Gaps = 61/315 (19%) Query: 71 LKWLISEY-RKSAHWGSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIRSGV--E 124 L+ +Y L+ S ++ES D + G D + I T ++R + E Sbjct: 3 FAELLHDYCLFLKDSKGLSPQSLKAYESDVDQCLHFLCLHGRTDIQSINTDYLRMWMSYE 62 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK-------E 177 SRK SS + + ++R F + + + NP + PK T+ + Sbjct: 63 SRKVAKSSLARKIVAVRGFFAYLYTHKLIPSNPARPLGTPKLPKTLPAVLTQKQAVRLMD 122 Query: 178 DMQQFKSFWSEGSQPR--------------------------LAFEFLLYSGLRCSDSCR 211 ++ +G R E L +G+R ++ Sbjct: 123 QAEEVCERDRDGQADRAETGKAKAELSKAEAEKKTLLDMRDDAIMEVLYATGIRVAELVS 182 Query: 212 AGVQHLQNNIFSIKTQKTGTIITV-----ELPDGFMKLLA----------------MTPI 250 V + ++K G V + + + + Sbjct: 183 LDVDDIDFTTRTVKVTGKGNKQRVVPFGKPAAEALDRWIRQGRDGLLDQAAPSAAQGSAA 242 Query: 251 GKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMA 309 + F+ + +++N Q A +AGV + S H +R +AT D GA E+ Sbjct: 243 DRSAVFVGSRGKRINQRQVREVVHRLAREAGVPDISPHALRHSAATHLLDGGADLREVQE 302 Query: 310 TYGWKTVDQAETYTK 324 G ++ + YT Sbjct: 303 MLGHSSLQTTQRYTH 317 >gi|21282864|ref|NP_645952.1| hypothetical protein MW1135 [Staphylococcus aureus subsp. aureus MW2] gi|49486091|ref|YP_043312.1| putative integrase/recombinase [Staphylococcus aureus subsp. aureus MSSA476] gi|297208102|ref|ZP_06924533.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300912183|ref|ZP_07129626.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus TCH70] gi|34222912|sp|Q8NWZ8|XERC_STAAW RecName: Full=Tyrosine recombinase xerC gi|81649416|sp|Q6G9W1|XERC_STAAS RecName: Full=Tyrosine recombinase xerC gi|21204303|dbj|BAB95000.1| xerC [Staphylococcus aureus subsp. aureus MW2] gi|49244534|emb|CAG42963.1| putative integrase/recombinase [Staphylococcus aureus subsp. aureus MSSA476] gi|296887345|gb|EFH26247.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300886429|gb|EFK81631.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus TCH70] Length = 298 Score = 110 bits (275), Expect = 3e-22, Method: Composition-based stats. Identities = 37/266 (13%), Positives = 94/266 (35%), Gaps = 22/266 (8%) Query: 85 GSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGVE---SRKHTPSSAIQFLTS 139 + + ++ S++ Q + + + + R+ + S +S + +++ Sbjct: 16 RNFSEHTLKSYQDDLIQFNQFLEQEHLQLKTFEYRDARNYLSYLYSNHLKRTSVSRKIST 75 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLA 195 +R +++ + + INP + + PK++ + + +E+M+ E + + R+ Sbjct: 76 LRTFYEYWMTLDENIINPFVQLVHPKKEKYLPQFFYEEEMEALFKTVEEDTSKSLRDRVI 135 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVE--------LPDGFMKLL 245 E L +G+R S+ Q + N ++ K V + + Sbjct: 136 LELLYATGIRVSELVNIKKQDIDFYANGVTV-LGKGSKERFVPFGAYCRQSIENYLEHFK 194 Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATK-AGV-NKSAHGVRKFSATISADAGAT 303 + + +N + + + AGV H +R AT + GA Sbjct: 195 PIQSCNHDFLIVNMKGEAITERGVRYVLNDIVKRTAGVSEIHPHKLRHTFATHLLNQGAD 254 Query: 304 AHELMATYGWKTVDQAETYTKGADRI 329 + + G + YT +++ Sbjct: 255 LRTVQSLLGHVNLSTTGKYTHVSNQQ 280 >gi|308125862|ref|ZP_07663544.1| tyrosine recombinase XerC [Vibrio parahaemolyticus K5030] gi|308111049|gb|EFO48589.1| tyrosine recombinase XerC [Vibrio parahaemolyticus K5030] Length = 266 Score = 110 bits (275), Expect = 3e-22, Method: Composition-based stats. Identities = 37/228 (16%), Positives = 79/228 (34%), Gaps = 19/228 (8%) Query: 111 YRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170 R++ K +R G+ SS L+S+R F + + + ++ NP V P++K Sbjct: 21 VRQLAGKGMREGM-----KASSLATRLSSLRSFFDFLILRGEMSANPAKGVSAPRKKRPL 75 Query: 171 IRPWTKEDMQQFKSF---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT- 226 + +++ Q + R E + +GLR ++ V+ +Q ++ Sbjct: 76 PKNLDVDEVNQLLEVNEDDPLAIRDRAMMELMYGAGLRLAELVSVDVRDVQLRSGELRVI 135 Query: 227 QKTGTIITVE--------LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKAT 278 K V + + G+ F++ +++ Sbjct: 136 GKGDKERKVPFSGMATEWVGKWLRVRGDLAAPGEPALFVSKLGTRISHRSVQKRMAEWGQ 195 Query: 279 KAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 K V + S H +R AT ++ + G + + + YT Sbjct: 196 KQSVASHISPHKLRHSFATHMLESSNNLRAVQELLGHENISTTQIYTH 243 >gi|221642264|ref|YP_002533351.1| integrase:recombinase [Bacillus cereus Q1] gi|229052846|ref|ZP_04195288.1| Site-specific recombinase, phage integrase [Bacillus cereus AH676] gi|229199805|ref|ZP_04326410.1| Site-specific recombinase, phage integrase [Bacillus cereus m1293] gi|221243199|gb|ACM15908.1| integrase:recombinase [Bacillus cereus Q1] gi|228583670|gb|EEK41883.1| Site-specific recombinase, phage integrase [Bacillus cereus m1293] gi|228721504|gb|EEL73006.1| Site-specific recombinase, phage integrase [Bacillus cereus AH676] Length = 322 Score = 110 bits (275), Expect = 3e-22, Method: Composition-based stats. Identities = 43/284 (15%), Positives = 92/284 (32%), Gaps = 28/284 (9%) Query: 86 SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES---RKHTPSSAIQFLTSMRV 142 + + F +R+ IT H++ + R+ P++ +++++ Sbjct: 41 GFRKRTIDDYSKLFRYFMRELNIEKVEIITAAHVQMYINKLLNRELAPATVNIRISALKS 100 Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRLAFEF 198 +FK Q Y+ NP + + + I +++ G + A Sbjct: 101 VFKRLNEQGYIKSNPAVDFVKLRTDEAPIFTLNHNQIKRIFRVVDKTTYAGYRDYCAMLL 160 Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSIKTQ----KTGTIITVELPDGFMKLLAMTPIGKET 254 +L+ GLR ++ + + + +I K V + + L M Sbjct: 161 MLHCGLRVNEVNQLEANDIDFDNLTIMLAGAKNKNRKTRAVPMTKKVAEELRMLIDESRE 220 Query: 255 FF-------INNDKQKMNATQFSIWFKAKATKAGVNK----SAHGVRKFSATISADAGAT 303 +F + + + ++ T AG+ K S H +R AT G + Sbjct: 221 YFEGVTNVFLTQEGKVIDNDLLRKRMYRYGTLAGLLKECRPSPHSLRHTFATNFLRNGGS 280 Query: 304 AHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347 + LM G + Y RL + + V + + Sbjct: 281 VNALMRIMGHADITTTMRYV------RLNDEAVKEQYEKVAAKN 318 >gi|113968738|ref|YP_732531.1| tyrosine recombinase XerC [Shewanella sp. MR-4] gi|117918850|ref|YP_868042.1| tyrosine recombinase XerC [Shewanella sp. ANA-3] gi|123130813|sp|Q0HN93|XERC_SHESM RecName: Full=Tyrosine recombinase xerC gi|171460757|sp|A0KS67|XERC_SHESA RecName: Full=Tyrosine recombinase xerC gi|113883422|gb|ABI37474.1| tyrosine recombinase XerC [Shewanella sp. MR-4] gi|117611182|gb|ABK46636.1| tyrosine recombinase XerC [Shewanella sp. ANA-3] Length = 299 Score = 110 bits (275), Expect = 3e-22, Method: Composition-based stats. Identities = 32/274 (11%), Positives = 90/274 (32%), Gaps = 20/274 (7%) Query: 76 SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD-FDYRKITTKHIR---SGVESRKHTPS 131 Y +S L+ ++ ++ + + D + +H + + + + +P Sbjct: 13 ETYMQSER--QLSAHTVRNYMYELQRGSELLPEGVDLLNVGREHWQQVLAKLHRKGLSPR 70 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR---PWTKEDMQQFKSFWSE 188 S +L++++ ++ +R + +NP + PK+ + + + + Sbjct: 71 SLSLWLSAIKQWGEFLLRSGVIELNPAKGLSAPKQAKPLPKNIDVDSISHLLAIEGNDPL 130 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAM 247 + + E SGLR ++ + +Q + ++ K V + ++ ++ Sbjct: 131 TLRDKAIMELFYSSGLRLAELAALDLSSVQYDQHEVRVLGKGNKERIVPVGRYAIEAISA 190 Query: 248 T-------PIGKETFFINNDKQKMNATQFSIWFKAK--ATKAGVNKSAHGVRKFSATISA 298 F+ ++++ + H +R AT Sbjct: 191 WLKCRKQISCEDNALFVTEKGKRLSHRSIQARMSKWGQEQALSMRVHPHKLRHSFATHML 250 Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 ++ A + G + + + YT D L Sbjct: 251 ESSADLRAVQELLGHENLSTTQIYT-SLDFQHLA 283 >gi|153840548|ref|ZP_01993215.1| tyrosine recombinase [Vibrio parahaemolyticus AQ3810] gi|149745789|gb|EDM56919.1| tyrosine recombinase [Vibrio parahaemolyticus AQ3810] Length = 362 Score = 110 bits (275), Expect = 3e-22, Method: Composition-based stats. Identities = 28/170 (16%), Positives = 57/170 (33%), Gaps = 18/170 (10%) Query: 175 TKEDMQQFKSF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKT 229 ++E + + + E L +GLR ++ ++++ ++ T K Sbjct: 178 SEEQVDALLDAPDPNDPVELRDKAMLELLYATGLRVTELVSLTMENISLRQGVVRVTGKG 237 Query: 230 GTIITVELPDGFMKLLAMTP----------IGKETFFINNDKQKMNATQFSIWFKAKATK 279 G V + + + + + F + ++M F K A Sbjct: 238 GKERLVPMGENAIDWIETFIQQGRPALLGETSSDVVFPSKRARQMTRQTFWHRIKYYAVI 297 Query: 280 AGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 AG++ S H +R AT + GA + G + + YT A Sbjct: 298 AGIDTDQLSPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVA 347 >gi|83720176|ref|YP_440728.1| site-specific tyrosine recombinase XerC [Burkholderia thailandensis E264] gi|167617501|ref|ZP_02386132.1| site-specific tyrosine recombinase XerC [Burkholderia thailandensis Bt4] gi|257140623|ref|ZP_05588885.1| site-specific tyrosine recombinase XerC [Burkholderia thailandensis E264] gi|83654001|gb|ABC38064.1| tyrosine recombinase XerC [Burkholderia thailandensis E264] Length = 306 Score = 110 bits (275), Expect = 3e-22, Method: Composition-based stats. Identities = 42/280 (15%), Positives = 88/280 (31%), Gaps = 32/280 (11%) Query: 75 ISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTP 130 I++Y + H L+ ++ ++ ++ + + +T +R V + Sbjct: 6 IADYLSNLRHVRKLSDHTLRAYAHELGELRKLANGRPLESLTAVDMRGAVARAHAGGLSA 65 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 S L++ R ++W + + NP +V PKR + + +D + G+ Sbjct: 66 RSISHRLSAWRAFYRWFSQHVEMNANPVAAVRAPKRAKTLPKALSVDDAAALMDAPTAGT 125 Query: 191 ----QPRLAFEFLLYSGLRCSDSCRA-------------GVQHLQNNIFSIKTQKTGTII 233 + E SGLR ++ G L +++ K Sbjct: 126 AEHLRDHAILELFYSSGLRLAELIGLDVEYTKDGDYRSEGWLDLAEAEVTVR-GKGEKER 184 Query: 234 TVELPDGFMKLLAMT--------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284 V + + L F++ +M+ K A AG+ Sbjct: 185 KVPVGRKAIDALNAWLAVRGEFVKRDARPLFLSVRGNRMSPGVVRERVKRAALAAGIPAN 244 Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 H +R AT + + G ++ + YT Sbjct: 245 VHPHVLRHSFATHVLQSSGDLRAVQELLGHASISATQVYT 284 >gi|219856083|ref|YP_002473205.1| hypothetical protein CKR_2740 [Clostridium kluyveri NBRC 12016] gi|219569807|dbj|BAH07791.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 293 Score = 110 bits (275), Expect = 3e-22, Method: Composition-based stats. Identities = 44/272 (16%), Positives = 96/272 (35%), Gaps = 19/272 (6%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQ----IIRKSGDFDY-RKITTKHIRSGVE- 124 LK +++Y+K + + + ++ + +I K Y + IT ++ ++ Sbjct: 10 LKAAVNQYKKYLINTEKSKETITGYSNHLKRMESYLIEKFNYPPYLQDITLTNLEEYLDS 69 Query: 125 --SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 +R +S + +R + + R+E V N L++E K K + TK ++ Sbjct: 70 QLARGLAQASRSKSYYIIRSFYNYCCRKELVEKNIALNLEPIKVKRKERTYLTKNEV-IV 128 Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQKTGTIITVELPDG 240 E + + ++G+R S+ ++ +N + I K + + D Sbjct: 129 LVQKMENELIKTIVMAIYHTGMRISECTNLKIKSVDFKNKVIHIIGGKGNKDRDIPISDT 188 Query: 241 FMKLL------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKF 292 K+L + FF +++ + + G K SAH +R Sbjct: 189 LNKILTKYIKNERLEVNSNYFFATKASGRISPQHINRQINETVKRLGWEKHVSAHILRHS 248 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTK 324 A+ ++ G + YT Sbjct: 249 FASKLIQQEVNLVKIQKLLGHSDLRVTSIYTH 280 >gi|153955710|ref|YP_001396475.1| tyrosine recombinase [Clostridium kluyveri DSM 555] gi|146348568|gb|EDK35104.1| Predicted tyrosine recombinase [Clostridium kluyveri DSM 555] Length = 287 Score = 110 bits (275), Expect = 3e-22, Method: Composition-based stats. Identities = 44/272 (16%), Positives = 96/272 (35%), Gaps = 19/272 (6%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQ----IIRKSGDFDY-RKITTKHIRSGVE- 124 LK +++Y+K + + + ++ + +I K Y + IT ++ ++ Sbjct: 4 LKAAVNQYKKYLINTEKSKETITGYSNHLKRMESYLIEKFNYPPYLQDITLTNLEEYLDS 63 Query: 125 --SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 +R +S + +R + + R+E V N L++E K K + TK ++ Sbjct: 64 QLARGLAQASRSKSYYIIRSFYNYCCRKELVEKNIALNLEPIKVKRKERTYLTKNEV-IV 122 Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQKTGTIITVELPDG 240 E + + ++G+R S+ ++ +N + I K + + D Sbjct: 123 LVQKMENELIKTIVMAIYHTGMRISECTNLKIKSVDFKNKVIHIIGGKGNKDRDIPISDT 182 Query: 241 FMKLL------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKF 292 K+L + FF +++ + + G K SAH +R Sbjct: 183 LNKILTKYIKNERLEVNSNYFFATKASGRISPQHINRQINETVKRLGWEKHVSAHILRHS 242 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTK 324 A+ ++ G + YT Sbjct: 243 FASKLIQQEVNLVKIQKLLGHSDLRVTSIYTH 274 >gi|326797736|ref|YP_004315555.1| integrase family protein [Sphingobacterium sp. 21] gi|326548500|gb|ADZ76885.1| integrase family protein [Sphingobacterium sp. 21] Length = 360 Score = 110 bits (275), Expect = 3e-22, Method: Composition-based stats. Identities = 41/251 (16%), Positives = 82/251 (32%), Gaps = 10/251 (3%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLF 144 + + ++ ++ F Q++ D + +R+ + +T + L S Sbjct: 98 KAYSPSTIRTYMVEFAQLLYILKDVPIDSLGYDRLRAYILYCINTLKISESQLHSRLNAI 157 Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGL 204 K+ Q + + RPK+ + + +++++++ + L + GL Sbjct: 158 KFYFEQVLHKPDFFAEIPRPKKPSTLPKVLSQKEVKRIFDAV-RNRKHLLMLQLCYGMGL 216 Query: 205 RCSDSCRAGVQHLQNNIFS--IKTQKTGTIITVELP----DGFMKLLAMTPIGKETFFIN 258 R S+ V + + I+ K V LP D + K F Sbjct: 217 RVSEVVNLKVSDIDSGRLQVLIEAGKGKKDRYVPLPSAVLDLLREYYKAYHP-KTYLFEG 275 Query: 259 NDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTV 316 + + FK A VNK HG+R AT + G + G + Sbjct: 276 QYGGRYSVRSVQAVFKNAMKAAKVNKPIGIHGLRHSYATHLLEYGTDMLFIQQLLGHNDI 335 Query: 317 DQAETYTKGAD 327 Y K + Sbjct: 336 KTTMLYAKVGN 346 >gi|315644272|ref|ZP_07897442.1| integrase family protein [Paenibacillus vortex V453] gi|315280647|gb|EFU43936.1| integrase family protein [Paenibacillus vortex V453] Length = 303 Score = 110 bits (275), Expect = 3e-22, Method: Composition-based stats. Identities = 48/274 (17%), Positives = 98/274 (35%), Gaps = 19/274 (6%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRKH 128 + ++ E+ + +A + + + + ++ D Y K+ + + Sbjct: 15 WEDILEEFLRFKLLNGIAKTTHKDYIRTVNLLFKRFPDAWGSYYKLEEA-VIDHLNQEGI 73 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS- 187 P++ LT +R FKW V + ++ NP +++ K + I + E +Q+ Sbjct: 74 APATFNSRLTYLRTFFKWCVEEGHLKKNPLTKIKKRKEGSR-IVAISIETLQELIRVPDQ 132 Query: 188 ---EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELP---- 238 G + F L +G+R S++ + I T ++ L Sbjct: 133 STFVGMRDYTLIIFTLDTGIRPSEALALQPNDFNLISGWVRIPDGAAKTRVSRTLNISPV 192 Query: 239 --DGFMKLLAMTPIG---KETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFS 293 D +L+ M P K F +N + + + + GV+ + + +R Sbjct: 193 TVDALKRLIDMRPRSWANKVPVFSTETGNVLNRHTWGDRLERHSKQVGVHITPYALRHAF 252 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 A GA+A L T G + + Y AD Sbjct: 253 ALEFLRNGASAFSLQKTLGHVDISMTKRYVALAD 286 >gi|46201486|ref|ZP_00208119.1| COG4974: Site-specific recombinase XerD [Magnetospirillum magnetotacticum MS-1] Length = 305 Score = 110 bits (275), Expect = 3e-22, Method: Composition-based stats. Identities = 37/268 (13%), Positives = 78/268 (29%), Gaps = 25/268 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKS---GDFDYRKITT--KHIRSGVESRKHTPSSAIQFLTS 139 + N+ ++ G + + + L+ Sbjct: 20 RGASPNTLDAYGRDLADFAEFLDGRGQSPLNAEGRSVAAYIARQAEIGMAARTQARRLSC 79 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-----GSQPRL 194 ++ + +A + +P +++ P+ + KE++ G Sbjct: 80 LKQFYGFAFAERLRPDDPTANIDAPRLGRPLPKYLRKEEVTALLDAARALEGRDGILMTA 139 Query: 195 AFEFLLYSGLRCSDSCRAGVQHL-QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKE 253 E L +GLR S+ + + ++ + K V L D L +E Sbjct: 140 LMETLYATGLRVSELVSLPLSAVARDPNVLVVRGKGSKERMVPLSDPARAALIAWKAERE 199 Query: 254 T---------FFINNDKQ--KMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISAD 299 T + + + + + F+ A AG++ S H +R A+ Sbjct: 200 TMVPKSRPSRWLFPSSGRLGHLTRSGFAKMLARAAVLAGLDPFKVSPHVLRHSFASHLLA 259 Query: 300 AGATAHELMATYGWKTVDQAETYTKGAD 327 GA + G + E YT D Sbjct: 260 GGADLRSVQEMLGHADIATTEIYTHLID 287 >gi|301308338|ref|ZP_07214292.1| site-specific recombinase, phage integrase family [Bacteroides sp. 20_3] gi|300833808|gb|EFK64424.1| site-specific recombinase, phage integrase family [Bacteroides sp. 20_3] Length = 380 Score = 110 bits (275), Expect = 3e-22, Method: Composition-based stats. Identities = 51/249 (20%), Positives = 91/249 (36%), Gaps = 35/249 (14%) Query: 108 DFDYRKITTKHIRSGVESRKHT----------PSSAIQFLTSMRVLFKWAVRQEYVAINP 157 D + + ++ + + P +A + T++R AVR+ +A NP Sbjct: 130 DVRLCDVDKQFYLDYIDWLRSSCKTAWGKPVSPKTAHSYYTTLRTALNEAVRENLIASNP 189 Query: 158 ------CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCR 211 ++ P+ K + T E++++ + Q R A+ F + GLR SD + Sbjct: 190 WYRLEMTEKIKVPESKRD---FLTIEEIKRMMATPFFNEQVRQAYLFSCFCGLRISDIRK 246 Query: 212 AGVQHLQNNIFSIKTQ----KTGTIITVELPDGFMKLL----AMTPIGKETFFINNDKQK 263 + L + + KT + + L +K L TP G Sbjct: 247 LRWRDLSMSGGQWRASVVMTKTIHPVYIPLSSQAVKWLPERGDCTPDG------LVFGGL 300 Query: 264 MNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321 N + K A KAGV K + H R A + GA + + G ++V + Sbjct: 301 PNEGNLCVNLKNWAEKAGVKKNVTFHTARHSCAVLLLTLGADIYTVSKILGHRSVRSTQV 360 Query: 322 YTKGADRIR 330 Y K D+ + Sbjct: 361 YAKIVDKKK 369 >gi|227513195|ref|ZP_03943244.1| phage integrase family site specific recombinase [Lactobacillus buchneri ATCC 11577] gi|227083576|gb|EEI18888.1| phage integrase family site specific recombinase [Lactobacillus buchneri ATCC 11577] Length = 385 Score = 110 bits (275), Expect = 3e-22, Method: Composition-based stats. Identities = 47/356 (13%), Positives = 109/356 (30%), Gaps = 47/356 (13%) Query: 15 RTRHGKIIYYFRKG--HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72 R + Y F G +G+R R+ T A + + ++ Sbjct: 7 RKKGNNWYYAFDTGTVNGKRSRIERYGGKTKKQAEATLRQALQKYENDGAVVKLTNMNVQ 66 Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131 + ++ L N++I++ + + II K G+F R I +++ V T Sbjct: 67 QYFMYWYENYVQRELKPNTQINYLNIINKYIIPKIGNFRIRSIGPAALQNLVNDLGET-K 125 Query: 132 SAIQFLTSMRVLFKWAVRQ-----EYVAINPCLSVERPK------RKTEGIRPWTKEDMQ 180 A + + ++ K ++ + + +P + PK + ++ T + Sbjct: 126 LAKHTVQIIVMVIKEGFKKAVYPYQLIKEDPARYIIMPKYHDDERITRKKLKIITMNQYE 185 Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-----------------NNIFS 223 Q S + + + +G+R + C ++ Sbjct: 186 QILSITPPSNPFYIPLQIAFGTGMRRGEVCGLTWANVDLNGHTVEVKQAMMQEPKGKFSI 245 Query: 224 IKTQKTGTIITVELPDGFMKLLAMTPI--------------GKETFFINNDKQKMNATQF 269 + + T + T+ + + + LL + + Sbjct: 246 VTPKTTSSYRTISIGESLVDLLKQHKKHQIEERLRYGQYYHESNFVCTKENGSPVTPNTI 305 Query: 270 SIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324 + G + H +R AT+ + GA ++ A G + +TY+ Sbjct: 306 KYQCDRIQKELGFPFNFHSLRHTHATMLLENGANIKDIQARLGHSRIATTMDTYSH 361 >gi|326789890|ref|YP_004307711.1| integrase family protein [Clostridium lentocellum DSM 5427] gi|326540654|gb|ADZ82513.1| integrase family protein [Clostridium lentocellum DSM 5427] Length = 350 Score = 110 bits (275), Expect = 3e-22, Method: Composition-based stats. Identities = 48/294 (16%), Positives = 111/294 (37%), Gaps = 9/294 (3%) Query: 48 MSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG 107 A+ E K LK + + + + SL+ +++ S F+++ + Sbjct: 55 TDAIAALAKYNENPYDISTKKIKLKDIYERWCNTTDFISLSDSTKKSHALAFNKL-ENAH 113 Query: 108 DFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167 + + K+ T ++ ++ TP+ +Q + L+ +A + + V N ++ Sbjct: 114 NMPFSKLNTNTLQILIDETGSTPTVKLQIKKLLGNLYLYAEKYDIVTKNYSKFIDVGDTS 173 Query: 168 TE-GIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226 ++ R +T E++++ + +E F+LY+G R S+ ++++ ++ Sbjct: 174 SKIERRIYTHEEIEKLWNNLAENKWIDSIL-FMLYTGFRVSEMLELKIENIDLENLTMSG 232 Query: 227 QKTGT--IITVELPDGFMKLLAMTPIGK-ETFFINNDKQKMNATQFSIWFKA-KATKAGV 282 K T+ + + ++ E F KM A + + F + + Sbjct: 233 GKKTAAGKRTIPIHSKIVDIVKNRYDENYEYLFRTQKGTKMTADSYRVSFYNPIMEQLNL 292 Query: 283 NKSA-HGVRKFSATISADAGATAHELMATYGWKTVDQAETYT-KGADRIRLGIK 334 S H +R + A L G T D + YT K D ++ ++ Sbjct: 293 TGSGCHDLRHTFCSKMDSYNINATTLKRIMGHSTKDVTDIYTHKTIDDLKEAVE 346 >gi|73539788|ref|YP_294308.1| site-specific tyrosine recombinase XerC [Ralstonia eutropha JMP134] gi|72117201|gb|AAZ59464.1| tyrosine recombinase XerC subunit [Ralstonia eutropha JMP134] Length = 339 Score = 110 bits (275), Expect = 3e-22, Method: Composition-based stats. Identities = 53/307 (17%), Positives = 95/307 (30%), Gaps = 47/307 (15%) Query: 85 GSLAVNSRISFESYFDQI----IRKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFL 137 LA ++ S+ + + + + T+HIR+ +S + L Sbjct: 26 RKLAGHTISSYRRDLTVLQAHAAKHAPGIALLALQTRHIRAFAARMHGEGLAGTSIARTL 85 Query: 138 TSMRVLFKWAVRQEY-VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS-----Q 191 ++ R + WA + V NP V P+ + + E S G+ + Sbjct: 86 SAWRGFYLWAAQHGLGVQANPVDGVRAPRSGHRLPKALSVEHAVALVS-HPAGTDAAALR 144 Query: 192 PRLAFEFLLYSGLRCSDSCRA-------------GVQHLQNNIFSIKTQKTGTIITVELP 238 + +E SGLR ++ + G L ++ T K TV + Sbjct: 145 DQAVWELFYSSGLRLAELVQLDVRYERLDGYESAGWLDLSGAELTV-TGKGSRRRTVPVG 203 Query: 239 DGFMKLLAM-------------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS 285 M+ L P F+ +++ + K +A +AGV Sbjct: 204 SKAMEALRAWLGVREQLLRPGAAPEDASALFLGARGHRLSMRVVQMRLKQQAIRAGVPAD 263 Query: 286 --AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG---IKNSRRIS 340 H +R AT + + G ++ + YT D L K R Sbjct: 264 VHPHMLRHSFATHMLQSSGDLRAVQELLGHASIATTQIYT-SLDFQHLAKVYDKAHPRAG 322 Query: 341 SVVDSDD 347 S D Sbjct: 323 RAAPSKD 329 >gi|288947732|ref|YP_003445115.1| integrase family protein [Allochromatium vinosum DSM 180] gi|288898248|gb|ADC64083.1| integrase family protein [Allochromatium vinosum DSM 180] Length = 308 Score = 110 bits (275), Expect = 3e-22, Method: Composition-based stats. Identities = 43/232 (18%), Positives = 86/232 (37%), Gaps = 29/232 (12%) Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 RK P + ++++ +KWA++ + V +P E+PK +++ + K Sbjct: 67 ERKVKPHIISRRVSALSTFYKWALKSKLVETDPVYLAEKPKTPQRIPIWLERDEQDRLKE 126 Query: 185 FWSEGS-----------------QPR--LAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSI 224 + S + R + F+ L SGLR S++ V+ ++ + Sbjct: 127 ALRDISDLPENIFGNTPETIMLIRQRYQVLFDLLQNSGLRISEALALRVRDVRVTGQIAR 186 Query: 225 KTQ---KTGTIITVELP----DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKA 277 + K V LP + ++ P + F + + Sbjct: 187 SVRVIGKGNKERMVPLPVAFGEELAAWISDLPSDEFIFAKESGGDPPKPRTVRDYLSKII 246 Query: 278 TKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 KAG++K + H +R AT ++GA ++ A G + + YT +D Sbjct: 247 KKAGLDKKITPHKLRHTYATRLLESGAELIDIQALLGHANLATTQMYTHVSD 298 >gi|167854818|ref|ZP_02477596.1| site-specific tyrosine recombinase XerC [Haemophilus parasuis 29755] gi|167854116|gb|EDS25352.1| site-specific tyrosine recombinase XerC [Haemophilus parasuis 29755] Length = 261 Score = 110 bits (275), Expect = 3e-22, Method: Composition-based stats. Identities = 36/230 (15%), Positives = 78/230 (33%), Gaps = 16/230 (6%) Query: 111 YRKITTKHIRSGV---ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167 ++++ +R + + + S L ++R + V+Q + +NP L ++ PK Sbjct: 10 WQELDASTVRWILSQSHKQGLSAKSIGLRLVALRQFLAFLVKQGELKVNPTLGIKSPKAN 69 Query: 168 TEGIRPWTKEDMQQFKSFW---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224 + E + Q + + E + SGLR S+ + + + Sbjct: 70 KHLPKNIDAEQIGQLLNIDSNEPLDLRDVAMMELMYSSGLRLSELQGLDLGDMDLPNREV 129 Query: 225 KT-QKTGTIITVEL----PDGFMKLLAMT---PIGKETFFINNDKQKMNATQFSIWFKAK 276 + K V + D + LA+ F+N +++ + K Sbjct: 130 RLLGKGNKERIVPIGSKALDAIEQWLAVRGQFHPKDNAVFLNQRGGRLSHRSIQLAMKKW 189 Query: 277 ATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 K ++ H +R AT +A + G ++ + YT Sbjct: 190 GQKQALDTHLHPHKLRHSFATHMLEASQDLRAVQELLGHSSLSTTQIYTH 239 >gi|118579558|ref|YP_900808.1| phage integrase family protein [Pelobacter propionicus DSM 2379] gi|118502268|gb|ABK98750.1| phage integrase family protein [Pelobacter propionicus DSM 2379] Length = 367 Score = 110 bits (275), Expect = 3e-22, Method: Composition-based stats. Identities = 43/297 (14%), Positives = 91/297 (30%), Gaps = 36/297 (12%) Query: 65 RKKPTTLKWLISEYRKSAHWGSLAVNSRISFES---YFDQIIRKSGDFDYRKITTKHIRS 121 +K TT L +Y + ++ ++S ++ R G+ IT + + Sbjct: 62 KKYTTTFDQLAEKYLEYC-------KAQRDYKSKAGRVRRLQRTFGEMRLIDITLEELER 114 Query: 122 GVESR----------------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP- 164 +R +P++ + LT+++ +F A + + + +V + Sbjct: 115 YQSARCTEAKQPKKEGGVSSGAVSPATVNRELTALKNMFTKAEQWGLIPDSTLKTVRKVR 174 Query: 165 --KRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN--N 220 K +R +M S G + F L +G R + H+ Sbjct: 175 LTKENNRRLRFLAVAEMTALVDSCSRGLRE--IVVFALNTGCRRGEILSLTWDHVDLKHG 232 Query: 221 IFSIKTQKTGTIITVELPDGFMKLLAMTPIG-KETFFINNDKQKMNATQFSIWFKAKATK 279 I K G + + + + N F + Sbjct: 233 FIRIADSKNGESRDIPINAALADMFKGVVRRIDSPYVFTNPDTGTRYQDVKRSFATACRR 292 Query: 280 AGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIK 334 A + N H +R A+ G + G K++ Y+ A D ++ ++ Sbjct: 293 AAIMNFHFHDLRHTFASHLVMNGVDLTTVSRLLGHKSLTMTLRYSHLAPDHLKKAVE 349 >gi|167037531|ref|YP_001665109.1| tyrosine recombinase XerD [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320115946|ref|YP_004186105.1| tyrosine recombinase XerD [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166856365|gb|ABY94773.1| tyrosine recombinase XerD [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319929037|gb|ADV79722.1| tyrosine recombinase XerD [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 290 Score = 110 bits (275), Expect = 3e-22, Method: Composition-based stats. Identities = 33/249 (13%), Positives = 91/249 (36%), Gaps = 17/249 (6%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDF-----DYRKITTKHIRSGVESRKHTPSSAIQFLTS 139 L+ N+ S+ Q + + + +K T + ++ + + ++ + ++S Sbjct: 17 KKLSKNTLESYNRDIKQFLNYLEEIGINYYNVKKSTILNYLYYLKKKGKSQATVSRNVSS 76 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195 ++ + + ++ + +P + PK + + T E + S +G + + Sbjct: 77 LKAFYHYLFMKKKIEEDPTYMINTPKVEKKPPTALTVEQVDMLLSIDFGNDEKGLRDKAL 136 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII------TVELPDGFMKLLAMTP 249 E L +GL+ S+ ++ + + + + + +E +++ Sbjct: 137 IELLYATGLKVSEVISLKLEDVNLSYGYVVIRSNKERVIPIGSHAIEALKNYIEKGRKAK 196 Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKA--GVNKSAHGVRKFSATISADAGATAHEL 307 G+ T F+N +K+ + K G + + +R+ A GA + Sbjct: 197 NGENTLFLNLRGEKLTRQGCWKIIREYTDKINPGFPVTPNTLRQSFAQHMLQNGADIRAV 256 Query: 308 MATYGWKTV 316 G++T Sbjct: 257 QEMLGYQTD 265 >gi|323703822|ref|ZP_08115459.1| integrase family protein [Desulfotomaculum nigrificans DSM 574] gi|323531237|gb|EGB21139.1| integrase family protein [Desulfotomaculum nigrificans DSM 574] Length = 304 Score = 110 bits (275), Expect = 3e-22, Method: Composition-based stats. Identities = 43/283 (15%), Positives = 83/283 (29%), Gaps = 35/283 (12%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGVES------ 125 L+ + +L+ S ++ ++ + + +T R V Sbjct: 6 LVKSFLMYQETKNLSERSIEWYQRTLNKFLEYCEENKISITSMTVPQARGYVHWLQNATA 65 Query: 126 ---RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ-- 180 +K+ + F+ S++V+F + + EY+ NP V++ K I + ++++ Sbjct: 66 KTGKKYADNGINGFIRSVKVMFNYLLEDEYIEKNPFAKVKQIKTDKVIIHTFEPQEVKKM 125 Query: 181 --QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV--- 235 QF + L L GLR S++ + + IK G + Sbjct: 126 LNQFNKSIYTDLRDALLIRILYDCGLRISEAINLKLTDIDTERNIIKVFGKGHKERIVPF 185 Query: 236 ------ELPDGFMKLLAM--TPIGKETFFINNDKQKMNATQFSIWFKA------KATKAG 281 E+ K + + F + + KA G Sbjct: 186 GRSVKREILKYLAKREKAISKDLDEGYLFSTRQGTPL---MIRNVIRKIQTVGKKANIEG 242 Query: 282 VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 S H R A G L G + Y Sbjct: 243 KRLSPHTFRHTFAKTYLMQGGDLFSLQQIMGHSDLSTTRQYVH 285 >gi|257485790|ref|ZP_05639831.1| Orf28 [Pseudomonas syringae pv. tabaci ATCC 11528] gi|302130312|ref|ZP_07256302.1| Orf28 [Pseudomonas syringae pv. tomato NCPPB 1108] gi|331012886|gb|EGH92942.1| Orf28 [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 319 Score = 110 bits (275), Expect = 3e-22, Method: Composition-based stats. Identities = 53/276 (19%), Positives = 103/276 (37%), Gaps = 31/276 (11%) Query: 84 WGSLA-VNSRISFESYFDQIIRKSGDF---DYRKITTKHI---RSGVESRKHTPSSAIQF 136 + +L +R ++++ G D+R++T H+ R+ +E R ++ + Sbjct: 33 FANLDNPRTRRAYQNDLTDFSSFIGLASADDFRQVTRSHVLAWRADLEHRGLAGATIRRK 92 Query: 137 LTSMRVLFKWAVRQE-YVAINPCLSVERPKRKT-EGIRPWTKED-----MQQFKSFWSEG 189 L ++ LF + NP V+RP+ +T EG P + ++ + +G Sbjct: 93 LAALASLFDHLLENNAVAGGNPVHGVKRPRIETNEGKTPALGDHQAKQLLEAPDTETLKG 152 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTII-TVELPDGFMKLL- 245 + R LLY GLR ++ + L + I ++ G+ I + L + + Sbjct: 153 LRDRAILAVLLYHGLRREEAAQLHTHDLQERRGIKHLRVHGKGSKIRFLPLHPVAAERIH 212 Query: 246 ---------AMTPIGKETFFI-NNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKF 292 A TP + A +A A KAG+ + HG+R Sbjct: 213 AYLEQDNERAATPGPLFRSLRGTTTGAGITANGIYTVVEAYAKKAGIVVEHLGVHGLRAT 272 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 +AT + + A ++ G + Y + R Sbjct: 273 AATNALEHDADIAKVQMWLGHANISTTRLYDRRGQR 308 >gi|254230112|ref|ZP_04923508.1| tyrosine recombinase XerC [Vibrio sp. Ex25] gi|151937357|gb|EDN56219.1| tyrosine recombinase XerC [Vibrio sp. Ex25] Length = 266 Score = 110 bits (275), Expect = 3e-22, Method: Composition-based stats. Identities = 37/228 (16%), Positives = 79/228 (34%), Gaps = 19/228 (8%) Query: 111 YRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170 R++ K +R G+ SS L+S+R F + + + ++ NP V P++K Sbjct: 21 VRQLAGKGMREGM-----KASSLATRLSSLRSFFDFLILRGEMSANPAKGVSAPRKKRPL 75 Query: 171 IRPWTKEDMQQFKSF---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT- 226 + +++ Q + R E + +GLR ++ V+ +Q ++ Sbjct: 76 PKNLDVDEVSQLLEVNEDDPLAVRDRAMMELMYGAGLRLAELVSVDVRDVQLRSGELRVI 135 Query: 227 QKTGTIITVE--------LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKAT 278 K V + + G+ F++ +++ Sbjct: 136 GKGDKERKVPFSGMATEWVAKWLKVRGDLAAPGEPALFVSKLGTRISHRSVQKRMAEWGQ 195 Query: 279 KAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 K V + S H +R AT ++ + G + + + YT Sbjct: 196 KQSVASHISPHKLRHSFATHMLESSNNLRAVQELLGHENISTTQIYTH 243 >gi|291515062|emb|CBK64272.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301] Length = 300 Score = 110 bits (275), Expect = 3e-22, Method: Composition-based stats. Identities = 46/267 (17%), Positives = 96/267 (35%), Gaps = 27/267 (10%) Query: 85 GSLAVNSRISFESYFDQIIRKSG----DFDYRKITTKHIRSGVESRKHT----PSSAIQF 136 + + ++ +Q + G F+ ++ITT IR + R T +S + Sbjct: 13 RRYSPLTVRNYRHDVEQFLAWLGVDDARFEPQRITTDDIREWILYRTETGRVSAASMNRE 72 Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS------EGS 190 ++S+R LF+W +R V + + + + M S Sbjct: 73 ISSLRALFRWLLRTGAVGRDVVHPIPSLRTSQRLPAFVPESRMNGIVSECECDSEDFVRE 132 Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPD---------- 239 + L L GLR ++ + S++ K V + + Sbjct: 133 RNSLIILLLYTCGLRLAELVGIDRDDFSADFSSLRIRGKGDKERIVPMLEFVREKILHYI 192 Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATIS 297 G ++ + ++ F+ + ++++ T + + +AGV KS H +R AT Sbjct: 193 GLIERQNICISSEKALFLTHKGKRISRTAVYRTVQEELDRAGVQGKKSPHVLRHTFATHL 252 Query: 298 ADAGATAHELMATYGWKTVDQAETYTK 324 ++GA E+ G ++ + YT Sbjct: 253 LNSGADMREIQELLGHASLQATQVYTH 279 >gi|237713434|ref|ZP_04543915.1| mobilizable transposon [Bacteroides sp. D1] gi|262407221|ref|ZP_06083769.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|229446416|gb|EEO52207.1| mobilizable transposon [Bacteroides sp. D1] gi|262354029|gb|EEZ03121.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] Length = 386 Score = 110 bits (275), Expect = 3e-22, Method: Composition-based stats. Identities = 46/303 (15%), Positives = 100/303 (33%), Gaps = 26/303 (8%) Query: 39 HESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSA-----HWGSLAVNSRI 93 ++ F+ Y +R + Y + + + Sbjct: 88 EDTPFLEYYRK----MVEERHKNPESDGNWGNWRS-CLRYLEIYCDEKTTFKDITPEFIN 142 Query: 94 SFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYV 153 F+ + + + + + +++ + R + + +S + + +R A + + Sbjct: 143 GFKDFLNNVEKDT----HKRTGPRRERDVF--QGLSQNSKVSYFNKLRACINQAYDERII 196 Query: 154 AINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAG 213 +NP +E K T E+++Q + + AF F +GLR SD + Sbjct: 197 PVNPLRGIEGFKAAEVKRDYLTLEEVKQLAATPCRYPILKRAFLFSCLTGLRKSDIQKLT 256 Query: 214 VQHL----QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF 269 + K +KTG +++ K L ++ F + + Sbjct: 257 WSEVQKFGDYTRIVFKQKKTGGQEYLDISSQAEKYLGERGNPEDPVFTGFTYGAWTSLEL 316 Query: 270 SIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 W + A +NK + H R A + D GA + + G K + + Y K D Sbjct: 317 QRW----SMAANINKNLTFHCGRHTFAVLMLDLGADIYTVSKLLGHKELATTQIYAKVLD 372 Query: 328 RIR 330 + + Sbjct: 373 KNK 375 >gi|257422531|ref|ZP_05599521.1| recombinase [Enterococcus faecalis X98] gi|257164355|gb|EEU94315.1| recombinase [Enterococcus faecalis X98] gi|315155672|gb|EFT99688.1| tyrosine recombinase XerC [Enterococcus faecalis TX0043] Length = 299 Score = 110 bits (275), Expect = 4e-22, Method: Composition-based stats. Identities = 39/267 (14%), Positives = 96/267 (35%), Gaps = 29/267 (10%) Query: 85 GSLAVNSRISFE---SYFDQIIRKSGDFDY---RKITTKHIRSGVESRKHTPSSAIQFLT 138 + ++ +++ +F ++ SG+ +Y + + S + ++++ +S + + Sbjct: 18 RGYSEKTKKAYQEDIQHFFSFLKTSGNDNYLTVEHLDVRAYLSELYDQEYSRNSISRKIA 77 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRL 194 S+R +++ ++ E + NP V K++ R + +++M + + Sbjct: 78 SLRSFYQFLLKNEAIQENPFSYVHMKKKQLRLPRFFYEKEMDALFESAQGEQPLDLRNKA 137 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-ITVE------------LPDGF 241 E L +G+R S+ V + + G V L +G Sbjct: 138 LLEVLYGTGIRVSECANLTVDAVDFQASVLLVHGKGNKDRYVPFGSFAQDALKDYLENGR 197 Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQ----FSIWFKAKATKAGVNKSAHGVRKFSATIS 297 L+ F+N+ +++ T + K + A ++ H +R AT Sbjct: 198 ALLMTKYQKKHPYVFVNHHGEQITPTGIEYVLNQLIKKSSLNAEIH--PHMLRHTFATHL 255 Query: 298 ADAGATAHELMATYGWKTVDQAETYTK 324 + GA + G + + Y Sbjct: 256 LNNGADMRTVQELLGHANLSTTQIYAH 282 >gi|149917823|ref|ZP_01906318.1| site-specific recombinase, phage integrase family protein [Plesiocystis pacifica SIR-1] gi|149821343|gb|EDM80745.1| site-specific recombinase, phage integrase family protein [Plesiocystis pacifica SIR-1] Length = 346 Score = 110 bits (275), Expect = 4e-22, Method: Composition-based stats. Identities = 46/282 (16%), Positives = 91/282 (32%), Gaps = 42/282 (14%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFD-----YRKITTKHIRSGVESR--KHTPSSAIQFL 137 L+ N+ ++ + I R + + +R+ + K S+ + L Sbjct: 16 RRLSPNTCRAYARDIEGFIDNVEARRDRPAKLRDLRLREVRAYLAELHGKRAASTVGRKL 75 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPR 193 +++R ++ R+ ++A N + RPK + ED+ + + G + R Sbjct: 76 SALRTFAEYCRREGWIAENEVALMRRPKLGRKLPVALPVEDLTEMIDGEQRPGAVGLRDR 135 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQ--------NNIFSIKTQKTGTIITVEL-------- 237 E L +GLR S++ + L+ + K V L Sbjct: 136 ALLEVLYGAGLRVSEAVALNLADLRWEGSGDAARLTLRVLQGKGNKDRVVPLGRKGAEAM 195 Query: 238 ---PDGFMKLLAMTPIGKE----------TFFINNDKQKMNATQFSIWFKAKATKAGVNK 284 D LLA TP F+ +++ + +G Sbjct: 196 RAWLDTREGLLAPTPREGMRSPARIDAGKAVFLGARGGRLSTRVAREVVYRRCQASGARA 255 Query: 285 --SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 HG+R AT +G + + G ++ + YT Sbjct: 256 VVGPHGLRHSFATHLLQSGCDLRSIQSMLGHASLSTTQRYTH 297 >gi|468715|emb|CAA55226.1| sss [Pseudomonas aeruginosa] Length = 302 Score = 110 bits (275), Expect = 4e-22, Method: Composition-based stats. Identities = 35/259 (13%), Positives = 89/259 (34%), Gaps = 19/259 (7%) Query: 85 GSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIR---SGVESRKHTPSSAIQFLT 138 ++ ++ + +I+ K+G D+ + T+ +R + + + + S + L+ Sbjct: 16 RQVSAHTLDGYRRDLLKILALAEKAGLSDWNALDTRSLRTFVARLHQQGQSSRSLARLLS 75 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRL 194 + R L+++ +R+ +P + PK + R + Q E + + Sbjct: 76 ATRGLYQYLLREGRCRHDPANGLRAPKSPRKLPRTLDADRALQLLDGAVEDDFIARRDQA 135 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT-VELPDGFMKLLAM------ 247 E SGLR S+ ++ L ++ + G + + + + L Sbjct: 136 LLELFYSSGLRLSELVGLDLEWLDLKEGLVRVRGKGNKVRELPVGKAARQALEAWLPLRT 195 Query: 248 -TPIGKETFFINNDKQKMNATQFSIWFKAK-ATKAGVNKSAHGVRKFSATISADAGATAH 305 FI +++ + + + G + H +R A+ ++ Sbjct: 196 QAAPEDGAVFIGRSGKRLTPRAIQLRVRQAGVRELGQHLHPHMLRHSFASHLLESSGDLR 255 Query: 306 ELMATYGWKTVDQAETYTK 324 + G + + YT Sbjct: 256 AVQELLGHADIATTQIYTH 274 >gi|54023975|ref|YP_118217.1| site-specific tyrosine recombinase XerD [Nocardia farcinica IFM 10152] gi|54015483|dbj|BAD56853.1| putative recombinase [Nocardia farcinica IFM 10152] Length = 316 Score = 110 bits (275), Expect = 4e-22, Method: Composition-based stats. Identities = 42/292 (14%), Positives = 82/292 (28%), Gaps = 43/292 (14%) Query: 75 ISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH-------IRSGVESR 126 I Y A N+ ++ + + + + Sbjct: 6 IDAYLDHLAVERGAARNTLGAYRRDLGRYRDFLTERGIGGLEQVREADVAAFTVALRSGG 65 Query: 127 KHTP----SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 P SS + L ++R L ++A + + + +V+ P + + + + Sbjct: 66 GDHPPLAASSVARALIAVRGLHRFAAAEGMTSTDVAHAVKPPTPGRRLPKALPYDQVLRL 125 Query: 183 KSFW----------------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN-NIFSIK 225 G + R E L +G R S+ V L + Sbjct: 126 LEAAGGGPAEDGDTAAADGGPRGLRDRALLELLYSTGARISEMVGLDVDDLDTTERAVVL 185 Query: 226 TQKTGTIITVELPDGFMKLLAMTPIGKE------------TFFINNDKQKMNATQFSIWF 273 K G V + + + + F+N +++ Sbjct: 186 RGKGGKQRIVPIGRPALAAVDAYLVRGRPVLAAAGKGTGGALFLNVRGGRLSRQSAWQVL 245 Query: 274 KAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 + A +AG+ S H +R AT D GA + G +V + YT Sbjct: 246 QTAAERAGIGAAVSPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQIYT 297 >gi|317128840|ref|YP_004095122.1| integrase family protein [Bacillus cellulosilyticus DSM 2522] gi|315473788|gb|ADU30391.1| integrase family protein [Bacillus cellulosilyticus DSM 2522] Length = 324 Score = 110 bits (275), Expect = 4e-22, Method: Composition-based stats. Identities = 39/262 (14%), Positives = 91/262 (34%), Gaps = 20/262 (7%) Query: 86 SLAVNSRISFESYFDQI-----IRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSM 140 L+ + ++ +F + D +I ++ + S+ L ++ Sbjct: 45 GLSKQTLFDYDVHFKYLLDFLERDLMADEMTTEIFLEYRNYMLNDLGLKASTVNIRLRTI 104 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ----QFKSFWSEGSQPRLAF 196 R +++ + ++ + K + + + +++ Q + G + ++ F Sbjct: 105 RAFLRYSYEEGWIDQPIHEKFKPVKAPQKEVDALSPREIKLLLSQINDDYYAGFRDKVLF 164 Query: 197 EFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELP------DGFMKLLAMT 248 +L S R S+ +++ N + ++ T T + +P + + T Sbjct: 165 FTMLDSMARISELLAIKRENVDLRNGVIKLEADGTKTKVDRFVPISTRTSKLLQEYINET 224 Query: 249 PI-GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAH 305 +E F+ D Q ++A AG+NK S H R A + G Sbjct: 225 SDFEQEILFLTYDGQVLSANTVRKSLMDYGKAAGINKQVSPHIWRHSGAILYIMNGGDPF 284 Query: 306 ELMATYGWKTVDQAETYTKGAD 327 L + G T+ Y + A+ Sbjct: 285 SLKSILGHTTLHMTNHYVQMAN 306 >gi|111224556|ref|YP_715350.1| site-specific tyrosine recombinase [Frankia alni ACN14a] gi|111152088|emb|CAJ63815.1| site-specific tyrosine recombinase (partial match) [Frankia alni ACN14a] Length = 349 Score = 110 bits (275), Expect = 4e-22, Method: Composition-based stats. Identities = 51/318 (16%), Positives = 96/318 (30%), Gaps = 53/318 (16%) Query: 66 KKPTTLKWLISEYRKSAH-WGSLAVN----SRISFESYFDQII-------RKSGDFDYRK 113 + T +I+ Y LA N R Y + + G+ + Sbjct: 3 SQRGTPGNVIARYLHHLEGERGLAQNSVLAYRRDLRRYLNHLSAQGLCSLDAVGEAEVAG 62 Query: 114 ITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173 +S + L ++R L ++A + V+ + V P + + Sbjct: 63 FAAALRLGDETHPPLAAASVARMLVAVRSLHRFAAEEGDVSEDVSRPVRPPTPPRKLPKA 122 Query: 174 WTKEDMQQFKSFWSEGSQPRLA----------------------------FEFLLYSGLR 205 + + + + + + +A E L +G R Sbjct: 123 LSVDQVTAVLAAAAGTPRAGVAGVAGRAEDLAAAPVEPAEAVRRLRATALLELLYGTGAR 182 Query: 206 CSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLL----------AMTPIGKET 254 S++ V L +++ K G V L + L P Sbjct: 183 ISEAVGLDVDDLDLESAAVRLHGKGGRDRIVPLGRCAVAALGDYLRLGRPSLAGPRSGAA 242 Query: 255 FFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGW 313 F++ +++ + A +AGV+ S H +R AT D GA + G Sbjct: 243 VFLSRRGNRLSRQSAWTVLRTAADQAGVDGVSPHVLRHSFATHLLDGGADVRVVQELLGH 302 Query: 314 KTVDQAETYT-KGADRIR 330 +V + YT DR+R Sbjct: 303 ASVSTTQIYTLVTVDRLR 320 >gi|329946754|ref|ZP_08294166.1| site-specific recombinase, phage integrase family [Actinomyces sp. oral taxon 170 str. F0386] gi|328526565|gb|EGF53578.1| site-specific recombinase, phage integrase family [Actinomyces sp. oral taxon 170 str. F0386] Length = 264 Score = 110 bits (275), Expect = 4e-22, Method: Composition-based stats. Identities = 41/220 (18%), Positives = 78/220 (35%), Gaps = 26/220 (11%) Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---- 186 SSA + +T++R K+ + + + +P +V P+ + + E++++ Sbjct: 26 SSASRTVTAVRGWHKFLLAEGTTSQDPSATVRPPQPGRRLPKALSIEEVRRLLEAASIDD 85 Query: 187 -SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVEL------- 237 + R E L +G R S++ V L + ++ K V + Sbjct: 86 SPVSLRDRALLEVLYATGARISEAVGLVVDDLDADSRLLRLFGKGRKERVVPMGTYAWEA 145 Query: 238 PDGF----MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--------- 284 D + LA G F+N + ++ + A +AG+ Sbjct: 146 LDAYLVRGRPALAEKGRGVPQVFLNTLGRPLSRQSAWAVLQQAAERAGLTGAGASTERHI 205 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 S H +R AT GA + G +V + YTK Sbjct: 206 SPHTLRHSFATHLLAGGADVRVVQEMLGHASVTTTQIYTK 245 >gi|296444917|ref|ZP_06886879.1| integrase family protein [Methylosinus trichosporium OB3b] gi|296257585|gb|EFH04650.1| integrase family protein [Methylosinus trichosporium OB3b] Length = 430 Score = 110 bits (275), Expect = 4e-22, Method: Composition-based stats. Identities = 67/380 (17%), Positives = 121/380 (31%), Gaps = 46/380 (12%) Query: 10 FVTKERT-RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68 FV + R G+ + R G+ +L P ++ A M A + ++ Sbjct: 42 FVVEYRPHGGGRSVAKRRVTLGKTTQL-TPEQARRAAADMLAQVRLGADPAAEKASHREA 100 Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH 128 T+ LI + G L ++ S+ + D + G +T + + + Sbjct: 101 LTVAGLIEAFEAEHVAGKLKDSTGRSYRAGLDALKGAHGSLKAEALTRGQVAALHAKMRA 160 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVA--INPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 T +A + L + +F W +++ V NP ++R K R T E++ + Sbjct: 161 TRYAANRALATWSKMFAWGMKRGLVPKGDNPAREIDRYKEDKRE-RFLTSEELARLGDAL 219 Query: 187 SEGSQPRLAFE------------------------------FLLYSGLRCSDSCRAGVQH 216 EG L +E L+ +G R + A Sbjct: 220 REGETSGLVYEVDESKPKAKHAPKLENRRVKLDPLAAGAIRLLILTGARLREILDAQWSQ 279 Query: 217 LQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMTPI--GKETFFIN-NDKQKMNATQFSI 271 + I + KTG ++ L +LA P G D + Sbjct: 280 VDSERGILFLSDSKTGRK-SIYLSAAAQAVLANLPKIEGNPHVIAGAKDGEP--RADLKK 336 Query: 272 WFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRI 329 + A AG+ H +R A++ A A + G Y AD + Sbjct: 337 PWSAVKRAAGLEGVRLHDLRHSFASVGAGASLGLPIIGKLLGHTQAATTARYAHLDADPL 396 Query: 330 RLGIKNSRR-ISSVVDSDDP 348 R + I++ +D P Sbjct: 397 RRAVDTIGATIAAAMDGGKP 416 >gi|15894453|ref|NP_347802.1| site-specific tyrosine recombinase XerC [Clostridium acetobutylicum ATCC 824] gi|15024091|gb|AAK79142.1|AE007632_7 Integrase/recombinase (xerD/xerC family) [Clostridium acetobutylicum ATCC 824] gi|325508584|gb|ADZ20220.1| site-specific tyrosine recombinase XerC [Clostridium acetobutylicum EA 2018] Length = 299 Score = 110 bits (274), Expect = 4e-22, Method: Composition-based stats. Identities = 37/263 (14%), Positives = 95/263 (36%), Gaps = 28/263 (10%) Query: 88 AVNSRISFESYF--------DQIIRKSGDFDYRKITTKHIRSGVE---SRKHTPSSAIQF 136 + +R + + ++ + + D D+ I + I+ + ++ + Sbjct: 18 SEGTRKQYLNDLKVWFRYMKNKKRQITKDEDFVNIDYREIKKFINYLIKNGRAATTIRRK 77 Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVER---PKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193 + S+++ F++ +++ V NP +++ PK + + E+ ++ + + + R Sbjct: 78 IISLKLFFQYLDQEKIVLDNPFDKIDKRDLPKIPKRLPKSLSIEECKRLINSVNSRNTIR 137 Query: 194 --LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIG 251 L +G+R S+ V ++ I ++ + V L D K++ + Sbjct: 138 DKCIIIIFLSTGMRLSELISLNVDNILEEEIRIIGKENKERV-VYLTDQAKKIVKLYIKQ 196 Query: 252 KE------TFFINNDKQKMNATQFSIWFKAKATKAGVNKS----AHGVRKFSATISADAG 301 + F++ ++ + AG+ H +R AT+ +G Sbjct: 197 RPKNLKTKALFLSERNGRIARGTVQNAIRNAMYNAGIKGDNDVLVHILRHTFATLLYQSG 256 Query: 302 -ATAHELMATYGWKTVDQAETYT 323 +L G + V YT Sbjct: 257 EVDLFQLQELLGHEDVSTTRIYT 279 >gi|227879131|ref|ZP_03997015.1| integrase-recombinase [Lactobacillus crispatus JV-V01] gi|227861288|gb|EEJ68923.1| integrase-recombinase [Lactobacillus crispatus JV-V01] Length = 302 Score = 110 bits (274), Expect = 4e-22, Method: Composition-based stats. Identities = 41/261 (15%), Positives = 99/261 (37%), Gaps = 24/261 (9%) Query: 88 AVNSRISFESYF---DQIIRKSGDFD----YRKITTKHIRSGVESRKHTPSSAIQFLTSM 140 + + +++++ ++ ++G F R+ + + RK SS ++ ++S+ Sbjct: 22 SAKTVLAYQTDLHEAERFWHENGGFPGWTKVRERDIQVYLQHLAERKLARSSQLRKMSSL 81 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRLAF 196 +++ R++ VAI+P + + + + + + + +++Q + F Sbjct: 82 HSFYRFLTRRKLVAIDPTKGITLRRGEKKLPQFFYQPELKQVFDSLKGNKPLTMRNLAMF 141 Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-ITVELPDGFMKLL-----AMTP- 249 E +G+R S+ + L ++ +I G V D K L P Sbjct: 142 ELFYATGMRVSEVSNLTLNQLDLDLQTILVHGKGNKDRYVAFDDKTKKSLIAYLENARPL 201 Query: 250 ----IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGAT 303 ++ F+NN + + + +AG++ H +R AT + GA Sbjct: 202 LLKNDDEQHVFLNNQGTGITSRGIETVMQKTFNQAGISGKVHPHELRHSFATAMLNNGAD 261 Query: 304 AHELMATYGWKTVDQAETYTK 324 + G ++ + YT Sbjct: 262 LRSVQELLGHSSLSATQIYTH 282 >gi|254518936|ref|ZP_05130992.1| site-specific tyrosine recombinase XerC [Clostridium sp. 7_2_43FAA] gi|226912685|gb|EEH97886.1| site-specific tyrosine recombinase XerC [Clostridium sp. 7_2_43FAA] Length = 457 Score = 110 bits (274), Expect = 4e-22, Method: Composition-based stats. Identities = 47/303 (15%), Positives = 98/303 (32%), Gaps = 46/303 (15%) Query: 85 GSLAVNSRISFESYFDQIIR--------------KSGDFDYRKITTKHIRS-------GV 123 + N+ +E R + + D R I +R Sbjct: 156 KGKSPNTIKGYEIDLTLFFRFLKIYKGLITDDSLEFSEIDIRDIDNSFVRKIKLTDLYAF 215 Query: 124 ESRKHTPS-----SAIQFLTSMRVLFKWAV-RQEYVAINPCLSVERPKRKTEGIRPWTKE 177 S + + + +++ FK+ + + + NP L +E PK + + Sbjct: 216 LSFAEKQRENGSYARARKVAALKSYFKFLNGKAKIIDDNPTLELESPKINKRHPVYLSLD 275 Query: 178 D----MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII 233 + + + L G+R S+ C + ++ + +I K Sbjct: 276 ESVNLLSSLDKDNKNYYRDYCILTLFLNCGMRLSELCSIKLDKIKGDTLTII-GKGDKER 334 Query: 234 TVELPDGFMKLLA----------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV- 282 TV L + +K + TP KE +++ + +N + K +G+ Sbjct: 335 TVYLNEACLKAIDNYLAVRDTSKCTPEDKEYLLLSSRYKPINKRTVELLVKKHIFNSGLS 394 Query: 283 --NKSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339 + H +R +AT+ G L + G + + + YT + I NS + Sbjct: 395 NEKYTPHKLRHTAATLMYKHGNVDIRSLQSILGHENISTTQIYTHVDEEILRDAVNSNPL 454 Query: 340 SSV 342 S + Sbjct: 455 SKL 457 >gi|38234408|ref|NP_940175.1| putative phage integrase [Corynebacterium diphtheriae NCTC 13129] gi|38200671|emb|CAE50367.1| Putative phage integrase [Corynebacterium diphtheriae] Length = 271 Score = 110 bits (274), Expect = 4e-22, Method: Composition-based stats. Identities = 47/256 (18%), Positives = 88/256 (34%), Gaps = 12/256 (4%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134 I++Y++ G A + S+ + D +TT I + + + P++ Sbjct: 10 IADYQEHLLAGGRARGTIHVRISHISR-CLTFIDKPLWAVTTGDIERWLAAGEWGPAARK 68 Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194 TS+RV F WAVR+ + NP +++ + RP + + + RL Sbjct: 69 SARTSVRVFFAWAVREGLIETNPAITIIPVPQVRSVPRPCPDALIS--DAMKVAAPRVRL 126 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQ---NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIG 251 A E + GLR + R ++ K G + P + +A Sbjct: 127 AIEIMATCGLRRDECARVRAGDVEPVGQGWILRVRGKGGHERLIPCPPHLARRIAAA--- 183 Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATY 311 + F ++A A + H +R AT++ + Sbjct: 184 QGWVFPGGANGHVSAGWLGKLISRALPGA---WTPHKIRHRYATVAYGDTYDLRAVQELL 240 Query: 312 GWKTVDQAETYTKGAD 327 G +V + YT +D Sbjct: 241 GHASVATTQIYTAVSD 256 >gi|187251859|ref|YP_001876341.1| integrase family protein [Elusimicrobium minutum Pei191] gi|186972019|gb|ACC99004.1| Integrase family protein [Elusimicrobium minutum Pei191] Length = 337 Score = 110 bits (274), Expect = 4e-22, Method: Composition-based stats. Identities = 52/268 (19%), Positives = 94/268 (35%), Gaps = 22/268 (8%) Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSR--ISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123 K+ T + Y W +R +F+ FD I+ + G ITT+ I+ Sbjct: 55 KQDVTFAEIAERY-----WSLHGRKTRGAQTFKYTFDIILSRFGHMKVADITTEDIQKFY 109 Query: 124 ES--RKHTPSSAIQFLTSMRVLFKWAVRQE-YVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 + +PS+A + + R + A+ + Y NPC+ V R + + +TKED++ Sbjct: 110 NDTWERTSPSTANRHFSLFRAIINKALNLKLYKGQNPCIGVVRQRDNPPRDKYFTKEDIK 169 Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELP 238 +P +AF L +G R + + + I I K+G + L Sbjct: 170 SLLVTAENRLKPIIAFAVL--TGCRKMEILNLRWKDVDFYGGIIRITMSKSGKPREIPLA 227 Query: 239 DGFMKLLAMTPI--GKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATI 296 + +L + F I F+ K + H R A++ Sbjct: 228 NDLRPILLAMHTNPQDKVFNITV---PALKYSFNKLLKKLGFE---GYCFHTCRHTFASL 281 Query: 297 SADAGATAHELMATYGWKTVDQAETYTK 324 +L G T++ Y+ Sbjct: 282 YMQNDGNITDLQRILGHATIELTMRYSH 309 >gi|255013631|ref|ZP_05285757.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_7] Length = 367 Score = 110 bits (274), Expect = 4e-22, Method: Composition-based stats. Identities = 43/218 (19%), Positives = 78/218 (35%), Gaps = 21/218 (9%) Query: 127 KHTPSSA---IQFLTSMRVLFKWAVRQEYVAINP---CLSVERPKRKTEGIRPWTKEDMQ 180 K P SA + AVR + + NP E+PK T E+++ Sbjct: 145 KGKPLSASTRNTYYQIFNGALNAAVRAKRILKNPFNEMEKSEKPKMPESVRSYMTIEEVR 204 Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT----QKTGTIITVE 236 + + + A+ F + GLR SD +++ + + QKT I + Sbjct: 205 SLIATPMQNEGVKSAYLFSCFCGLRISDIIGLQWKNVFIDNGQYRLAVAMQKTKEPIYLP 264 Query: 237 LPDGFMKLL--AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKF 292 L + +K + + F + + K A AG++K + H R Sbjct: 265 LSNEALKWMPERGDKTADDHVF-------DLPSGINQLIKPWAKAAGISKRFTFHTARHT 317 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 AT+ GA + + G +V + Y K ++ + Sbjct: 318 FATMMLTLGADLYTVSKLLGHTSVKMTQVYAKIVNKKK 355 >gi|323466640|gb|ADX70327.1| Integrase/recombinase XerC [Lactobacillus helveticus H10] Length = 302 Score = 110 bits (274), Expect = 4e-22, Method: Composition-based stats. Identities = 36/237 (15%), Positives = 86/237 (36%), Gaps = 21/237 (8%) Query: 107 GDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166 G + ++ + + RK SS + ++S+ F++ R++++ I+P + + Sbjct: 48 GWKNVQERDIQIYLQNLADRKLVRSSQARQMSSLHSFFRFLTRRKFIKIDPTQGITLRRG 107 Query: 167 KTEGIRPWTKEDMQQFKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222 + + + +++Q + FE +G+R S+ ++ + N+ Sbjct: 108 EKKLPEFFYGNELKQVFDSLKGNKPLTMRNLALFELFYATGMRVSEVSNLTLRQIDLNLQ 167 Query: 223 SIKTQKTGTI-------------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF 269 +I G + L D LL ++ F++N ++ Sbjct: 168 TILVHGKGNKDRYVAFDDHTKKSLVRYLEDARPNLLKDET--EQHVFLSNLGNPLSKRGI 225 Query: 270 SIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 + +AG++ H +R AT + GA + G ++ + YT Sbjct: 226 EYVMQKTFNQAGISGKVHPHELRHTFATAMLNNGADLRSVQELLGHSSLSATQIYTH 282 >gi|227891778|ref|ZP_04009583.1| phage integrase [Lactobacillus salivarius ATCC 11741] gi|227866437|gb|EEJ73858.1| phage integrase [Lactobacillus salivarius ATCC 11741] Length = 381 Score = 110 bits (274), Expect = 4e-22, Method: Composition-based stats. Identities = 63/368 (17%), Positives = 127/368 (34%), Gaps = 55/368 (14%) Query: 5 LRLPPFVTKERTRHGKIIYYFR--------KGHGRRIRLPYPHESTFIPAYMSALTGSTP 56 +++ ++ K+ Y FR G R IR + + Sbjct: 2 VKIQKYLDKDE----NTRYKFRYYAGVDELTGKQRYIRRQGFTSEEDAKNELLKIKYLVS 57 Query: 57 KREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFE-SYFDQIIRKSGDFDYRKIT 115 +Y + ++ E+ + H + ++ E + D KIT Sbjct: 58 TNQYFKDVKS--GKFGDVLDEWL-TLHKTRVKASTYHIIETRVTKYVRPYFNDMYVDKIT 114 Query: 116 TKHIRSGVES-RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK---TEGI 171 +H + V TP + ++ ++ +A+R + NP L V +PK++ ++ Sbjct: 115 VRHCQDFVSKAFVTTPKGYVYLISIVKNTLDYALRLGMIESNPMLYVIKPKKQATISDKH 174 Query: 172 R-PWTKEDMQQFKSFWSEGSQPR-LAFEFLLYSGLRCSDSCRAGVQHLQ----------- 218 + K+++++F +Q + F L YSG+R + L Sbjct: 175 DNFYNKDELKKFLEVAKYYNQEKYTIFRLLAYSGIRIGECLALTWHDLDYKNNTITINKT 234 Query: 219 ----NNIFSIKTQKTGTIITVELPD----------------GFMKLLAMTPIGKETFFIN 258 + +I+T KT V D +K+ + + F + Sbjct: 235 LARTDKGITIQTPKTKASNRVISLDVETIQILKSWQLEQRKQLLKIGINSMNKHQLIFNS 294 Query: 259 NDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVD 317 N + ++ + K A KAG++ ++HG R AT+ +G ++ A G V Sbjct: 295 NKNSFIFSSVITYDIKQIAKKAGIHPITSHGFRHTHATLLFASGMDIKQVQARLGHSKVQ 354 Query: 318 QA-ETYTK 324 + YT Sbjct: 355 TTLDVYTH 362 >gi|197122574|ref|YP_002134525.1| tyrosine recombinase XerD [Anaeromyxobacter sp. K] gi|196172423|gb|ACG73396.1| tyrosine recombinase XerD [Anaeromyxobacter sp. K] Length = 298 Score = 110 bits (274), Expect = 4e-22, Method: Composition-based stats. Identities = 41/267 (15%), Positives = 84/267 (31%), Gaps = 24/267 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITT------KHIRSGVESRKHTPSSAIQFLT 138 LA NS ++ + + + + + + R +P S + L+ Sbjct: 19 KGLAENSVEAYGRDLRRYLEHLDELGVDAWERVGRGEIQAHLAELVRRGLSPRSQARALS 78 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS----FWSEGSQPRL 194 ++R L + + + +P +E P+ + +++ + + + G + R Sbjct: 79 AIRSLHRLLAAERVTSADPSDEIESPRPGRRLPGLLSHDEVDRLLAAPDVRSAAGIRDRA 138 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFMKLLAMT----- 248 E L +GLR S+ + + I K V + + + Sbjct: 139 MLELLYATGLRVSELVSLQLNDVNLETRVLIARGKGNKERIVPVGAPAAEAVKAYLAVAR 198 Query: 249 -----PIGKETFFINNDKQKMNATQFSIWF--KAKATKAGVNKSAHGVRKFSATISADAG 301 + F+ +M F+ A+ S H +R AT + G Sbjct: 199 ERLLHGRRSKDLFVTPRGGRMTRQGFAKILDRCARRAGIRRRISPHKLRHSFATHLLEGG 258 Query: 302 ATAHELMATYGWKTVDQAETYTKGADR 328 A + G V + YT DR Sbjct: 259 ADLRAVQEMLGHADVSTTQIYTH-VDR 284 >gi|241664950|ref|YP_002983310.1| site-specific tyrosine recombinase XerC [Ralstonia pickettii 12D] gi|240866977|gb|ACS64638.1| tyrosine recombinase XerC [Ralstonia pickettii 12D] Length = 328 Score = 110 bits (274), Expect = 4e-22, Method: Composition-based stats. Identities = 52/289 (17%), Positives = 97/289 (33%), Gaps = 40/289 (13%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIR----KSGDFDYRKITTKHIRSGVESR--- 126 I+ Y + + L+ ++ S+ + R + + D ++ + HIR + Sbjct: 19 IAAYLDALRFERQLSPHTLESYTRELAVLQRLGAQHAANIDLTQLQSHHIRRMMAQLHGD 78 Query: 127 KHTPSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQ 181 + S + L++ R FKW A+R V NP V PK + + E M+Q Sbjct: 79 GLSGRSIARALSAWRGWFKWMALRDAAVTANPVDGVRAPKSPKRLPKALSVEQAVALMEQ 138 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN------IFSIKTQ------KT 229 E + R E GLR S+ ++H++ ++ + K Sbjct: 139 LPGDDPETVRDRAVNELFYSCGLRLSELVSLDMRHVKAGAYESASWLDLEAREVQVLGKG 198 Query: 230 GTIITVELP-------------DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAK 276 TV + + P F++ +++ Q + K Sbjct: 199 SKRRTVPVGTKAAQALAAWLAVRAQLAKPDAAPEDAHALFLSPRGKRLAQRQIQLRMKRN 258 Query: 277 ATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 A AGV H +R AT + + G ++ + YT Sbjct: 259 AIAAGVPADVHPHVLRHSFATHMLQSSGDLRAVQELLGHASIASTQVYT 307 >gi|85713796|ref|ZP_01044786.1| tyrosine recombinase XerD [Nitrobacter sp. Nb-311A] gi|85699700|gb|EAQ37567.1| tyrosine recombinase XerD [Nitrobacter sp. Nb-311A] Length = 340 Score = 110 bits (274), Expect = 4e-22, Method: Composition-based stats. Identities = 50/325 (15%), Positives = 102/325 (31%), Gaps = 40/325 (12%) Query: 43 FIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI 102 F+ A S + + S + T L L + A N+ ++ + + Sbjct: 4 FLDANRSFTSLENAIGGGMTSDKVSDTKLAALFLDML--AAEQGAGENTLDAYRRDLEDL 61 Query: 103 IRKSGDFDYRKI-----TTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINP 157 + T + + ++ R SS + L++MR LF++ + + + +P Sbjct: 62 SAFLARARRSFVIADTQTLRDYLNDLDLRGFKSSSVARRLSAMRHLFRFLLSERVRSDDP 121 Query: 158 CLSVERPKRKTEGIRPWTKEDMQQFKSFWSE--------------GSQPRLAFEFLLYSG 203 + PKR + + D+ + + ++ E L +G Sbjct: 122 AAILSGPKRGRSLPKILSIADVDRLLARAKADAESPDISPARRLRAARLYCLLEVLYATG 181 Query: 204 LRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFMKLLA-------------MTP 249 LR S+ + + + + K G V L D + +A T Sbjct: 182 LRVSELVSLPLSAARRDARMIVVRGKGGKERLVPLNDASRQAMANYLVAIDDQRGAGKTA 241 Query: 250 IGKETFFINNDK--QKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATA 304 + + + + F+ K A AG+ S H +R A+ GA Sbjct: 242 ATRPKWLFPSFGDSGHLTRQHFARELKELAAAAGLAPRLVSPHVLRHAFASHLLHNGADL 301 Query: 305 HELMATYGWKTVDQAETYTKGADRI 329 + G + + YT + Sbjct: 302 RIVQTLLGHTDISTTQIYTHVVEER 326 >gi|255283924|ref|ZP_05348479.1| tyrosine recombinase XerD [Bryantella formatexigens DSM 14469] gi|255265506|gb|EET58711.1| tyrosine recombinase XerD [Bryantella formatexigens DSM 14469] Length = 305 Score = 110 bits (274), Expect = 4e-22, Method: Composition-based stats. Identities = 40/278 (14%), Positives = 92/278 (33%), Gaps = 26/278 (9%) Query: 78 YRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQF 136 Y + + L N+ ++ Q + K + + + +K+ + + Sbjct: 10 YLEYCEYRKELDKNTIKAYRIDLCQYFTFICCDEPNKEKIEVYITELH-KKYKQKTVKRK 68 Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVE-RPKRKTEGIRPWTKEDMQQFKSF---------- 185 + S++ + + +E ++ NP ++ + K R +E++++ ++ Sbjct: 69 IASLKAFYNYLEEEEIISYNPFRKIKVKFKETITLPRIILREEIEKLLNYMYDCLKKNVL 128 Query: 186 --WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG-- 240 + + E L +G R + + N I+ K G V++ + Sbjct: 129 TGYKYQLRDIAVVEVLFATGARVYEISNIREDSVNLNSGQIRIMGKGGKERYVQISNSSV 188 Query: 241 ---FMKLLAM---TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKF 292 K FFINN + K A +AG+ + + H R Sbjct: 189 LAVLRKYYKQNENEIKKSGCFFINNRGNRYTEQSIRSMLKKYAKQAGIARNITPHMFRHS 248 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 AT + G + G ++ + Y A + + Sbjct: 249 FATYLIEEGVDVSCVQQIRGHSSIKTTQIYIHIAAKKQ 286 >gi|119471652|ref|ZP_01614037.1| mobilizable transposon, int protein [Alteromonadales bacterium TW-7] gi|119445431|gb|EAW26718.1| mobilizable transposon, int protein [Alteromonadales bacterium TW-7] Length = 377 Score = 110 bits (274), Expect = 4e-22, Method: Composition-based stats. Identities = 49/265 (18%), Positives = 86/265 (32%), Gaps = 15/265 (5%) Query: 81 SAHWGSLAVNSRISFESYFDQIIRKSGDFD------YRKITTKHIRSGVESRKHTPSSAI 134 S SL +S + + Y + DFD +R KH R+ + + +++ Sbjct: 111 SPSNVSLWESSLMHLKRYCEGNPLSFADFDADILLGFRTYLIKHARTKSDKLLSSNTTSC 170 Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194 F +R A + + NP V+ K + +E++ + Sbjct: 171 YFNK-VRAALNKAFHEGIIRRNPVNEVKTIKIEQNPRNYLEEEEVTALYKTECRYDVLKR 229 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGK 252 AF F +G+R SD + + L + + + KT + + LP LL Sbjct: 230 AFLFGCLTGMRWSDIQKLTWEKLTMIDPRATFQHIKTKQLQYLHLPSDATMLLGTPGEDH 289 Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMAT 310 E F + W +AG+ K + H R A + + Sbjct: 290 ERVFKGLKYSSYTNVALTQWM----LRAGITKHITFHCARHTFAVRMLTNDVDIYTVSKL 345 Query: 311 YGWKTVDQAETYTKGADRIRLGIKN 335 G + + YT DR R Sbjct: 346 LGHSELKTTQIYTDIIDRKRKEAMT 370 >gi|326384761|ref|ZP_08206438.1| site-specific tyrosine recombinase XerD [Gordonia neofelifaecis NRRL B-59395] gi|326196569|gb|EGD53766.1| site-specific tyrosine recombinase XerD [Gordonia neofelifaecis NRRL B-59395] Length = 307 Score = 110 bits (274), Expect = 4e-22, Method: Composition-based stats. Identities = 50/287 (17%), Positives = 90/287 (31%), Gaps = 31/287 (10%) Query: 68 PTTLKWLISEYRKSAH-WGSLAVNSRISFESYF---DQIIRKSGDFDYRKITTKHIRSGV 123 T+ I+ Y A N+ S+ + + G ++T +R+ + Sbjct: 2 AGTVDDAIARYLDHLTVERGSATNTVASYRRDLLRYNTFLAGRGVTTMSEVTEDDVRAFL 61 Query: 124 ESRKHT------PSSAI----QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173 + + P A + L + R K+ + A + SV PK + Sbjct: 62 VALRRGDPERGVPGLADSSVARTLVAARGFHKFCAAEGLTATDVAHSVRPPKPPRRLPKS 121 Query: 174 WTKEDMQQFKSFW-----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQ 227 +D+ G + R E L G R S+ + L + + Sbjct: 122 LPIDDVLAILDAAGAVDGPRGLRDRALVELLYSCGARISEVTSLDLDDLDLEHRAVVLRG 181 Query: 228 KTGTIITVELPDGFMKLLAM---------TPIGKETFFINNDKQKMNATQFSIWFKAKAT 278 K G V + ++ + F+N +++ A Sbjct: 182 KGGKERIVPVGGPAIEAVDAYLVRGRPALVKKSTPALFLNIRGGRLSRQSAWQVLVDAAE 241 Query: 279 KAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 +AGV+K S H +R AT D GA + G +V + YT Sbjct: 242 RAGVDKEVSPHTLRHSFATHLLDGGADVRVVQELLGHSSVTTTQVYT 288 >gi|224025008|ref|ZP_03643374.1| hypothetical protein BACCOPRO_01742 [Bacteroides coprophilus DSM 18228] gi|224018244|gb|EEF76242.1| hypothetical protein BACCOPRO_01742 [Bacteroides coprophilus DSM 18228] Length = 389 Score = 110 bits (274), Expect = 4e-22, Method: Composition-based stats. Identities = 44/238 (18%), Positives = 86/238 (36%), Gaps = 12/238 (5%) Query: 99 FDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPC 158 F + + +++ + R + + +S + + +R A + ++INP Sbjct: 147 FKEFLENVEKDTHKRTGPRRERDTF--QGLSQNSKVSYFNKLRACINKAYEERIISINPL 204 Query: 159 LSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ 218 +E K T E++++ S + AF F +GLR SD + +Q Sbjct: 205 RGIEGFKAAEVKREYLTLEEVKKLASTPCRYPVLKRAFLFSCLTGLRKSDIQKLTWSEIQ 264 Query: 219 N----NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFK 274 +KTG + +++ K L KE F + + W Sbjct: 265 KFGNFTRIVFNQKKTGGLEYLDITPQAEKYLGEHKNPKEPVFSGFTYGAWTSLELQRW-- 322 Query: 275 AKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 + AG+ N + H R A + D GA + + G + + + Y K D+ + Sbjct: 323 --SMNAGIQKNLTFHCGRHTFAVLMLDLGADIYTVSKLLGHRELSTTQIYAKVLDKNK 378 >gi|294142606|ref|YP_003558584.1| integrase/recombinase XerC [Shewanella violacea DSS12] gi|293329075|dbj|BAJ03806.1| integrase/recombinase XerC [Shewanella violacea DSS12] Length = 308 Score = 110 bits (274), Expect = 4e-22, Method: Composition-based stats. Identities = 32/269 (11%), Positives = 82/269 (30%), Gaps = 22/269 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDF--------DYRKITTKHIRSGVESRKHTPSSAIQF 136 L+ ++ ++ ++ K + +H+ + + +P S Sbjct: 17 RQLSAHTVRNYLYELHRVTDKLDASASFPISWSEISHEQIQHVLGQLHRQGLSPRSLSLT 76 Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR---PWTKEDMQQFKSFWSEGSQPR 193 L++++ + + + + NP ++ PK+ + + + + + + + Sbjct: 77 LSAVKQFCDFLLGEGVINANPAKNLSAPKQNKPLPKNMDLDSVTHLLEIDADDPLSVRDK 136 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLLAMT---- 248 E SGLR ++ V ++ + K V + + + Sbjct: 137 AIMELFYSSGLRLAELAALDVLDIRFADRQVKVLGKGSKERIVPVGRCAIDAIQAWLTFR 196 Query: 249 ---PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGAT 303 P E F+ ++ + +N H +R AT ++ A Sbjct: 197 EAIPCQDEALFVTAKGNRLAHRSIQARLAKWGQEQALNMRVHPHKLRHSFATHMLESSAD 256 Query: 304 AHELMATYGWKTVDQAETYTKGADRIRLG 332 + G + + YT D L Sbjct: 257 LRAVQELLGHANLSTTQIYT-SLDFQHLA 284 >gi|85859956|ref|YP_462158.1| phage integrase family protein [Syntrophus aciditrophicus SB] gi|85723047|gb|ABC77990.1| phage integrase family protein [Syntrophus aciditrophicus SB] Length = 364 Score = 110 bits (274), Expect = 4e-22, Method: Composition-based stats. Identities = 57/308 (18%), Positives = 104/308 (33%), Gaps = 14/308 (4%) Query: 51 LTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD 110 L G + ++ K L+ +Y + A +S +S Q+ G+ Sbjct: 40 LKGDIAEGKWFEKLPGDSYKFKDLMDKYMTEYSAVNKAASSYKRDKSIVTQLKSYFGEKY 99 Query: 111 YRKITTKHIRSGVESRKH---TPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKR 166 ++T I R+ + + L +M F A+R+ NP V++ + Sbjct: 100 LTELTPAMISDYKVKRRSDGVSSRTINYELITMSHAFNLAIREWGLANENPVSKVKKDRV 159 Query: 167 KTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--FSI 224 + R T E+ + Q F +++GLR S+ + +I Sbjct: 160 TNKIERWLTSEEETNLLKESPKWLQD--IIIFAIHTGLRQSEILDLKWSQVDMKRRTVTI 217 Query: 225 KTQKTGTIITVELPDGFMKLLAMTPIGKE----TFFINNDKQKMNATQFSIWFKAKATKA 280 QK I T+ L + M +L + F N + F KA Sbjct: 218 HEQKNRCIDTLPLNETAMTVLKNRHNPELPLEGYVFPNTLGDRKGNRLLLKAFYVALKKA 277 Query: 281 GV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT-KGADRIRLGIKNSRR 338 + N H +R AT GA + + WKTV + Y + +R I+ Sbjct: 278 NISNFRFHDLRHTFATRLIRKGADLYTVQKLGRWKTVTMVQRYAHHHTESLRAAIEMMDD 337 Query: 339 ISSVVDSD 346 + + ++ Sbjct: 338 VEKPIITN 345 >gi|170740412|ref|YP_001769067.1| tyrosine recombinase XerD [Methylobacterium sp. 4-46] gi|168194686|gb|ACA16633.1| tyrosine recombinase XerD [Methylobacterium sp. 4-46] Length = 309 Score = 110 bits (274), Expect = 4e-22, Method: Composition-based stats. Identities = 48/272 (17%), Positives = 87/272 (31%), Gaps = 27/272 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSG---VESRKHTPSSAIQFLTS 139 + N+ ++ D + D + +R+ + +R PSSA + L+ Sbjct: 23 RGASANTLAAYRRDLDDYLAHLAAEGLDPASVAPAGVRAYVADLAARGLKPSSAARRLSC 82 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG---------- 189 +R ++ + + +P V PKR + + ++ + E Sbjct: 83 IRGFHRFLYAEGHAPSDPTAPVSGPKRGRALPKVLSVAEVDTLLAVAKEAVARAPNPGEA 142 Query: 190 ---SQPRLAFEFLLYSGLRCSDSCRAGVQH-LQNNIFSIKTQKTGTIITVELPDGFMKLL 245 + E L +GLR S+ L F + K G V L D + Sbjct: 143 ARAQRLLCLLELLYATGLRVSELVSLPRAAALTKERFLVVRGKGGRERLVPLTDIARAAM 202 Query: 246 AMTPIGKET-----FFINNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKFSATIS 297 A F +++ + F+ KA A AG+ S H +R A+ Sbjct: 203 AAHLAHLAVPGPWLFPADSESGHLTRQAFARDLKAVAGAAGIRADRISPHVLRHAFASHL 262 Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRI 329 GA + G + + YT D Sbjct: 263 LQNGADLRVVQELLGHADISTTQIYTHILDER 294 >gi|319641219|ref|ZP_07995919.1| integrase [Bacteroides sp. 3_1_40A] gi|124107947|gb|ABM90616.1| integrase [Bacteroides uniformis] gi|145308091|gb|AAR05648.2| integrase [Bacteroides uniformis] gi|317387152|gb|EFV68031.1| integrase [Bacteroides sp. 3_1_40A] Length = 377 Score = 110 bits (274), Expect = 4e-22, Method: Composition-based stats. Identities = 40/204 (19%), Positives = 72/204 (35%), Gaps = 16/204 (7%) Query: 138 TSMRVLFKWAVRQEYVAINPCLSV---ERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194 + AVR E + NP + E+ + T E+++ + + + Sbjct: 167 RVLNGALNAAVRAEIIKSNPFTKISKSEKIRLPESKRSYMTIEEVRALIATPMKNESVKG 226 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT----QKTGTIITVELPDGFMKLLAMT-- 248 A+ F + GLR SD + + + + + QKT I + L +K + Sbjct: 227 AYLFSCFCGLRISDIIKLQWKDVFVDRGQYRLSVSMQKTKEPIYLPLSPEALKWMPARGD 286 Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHE 306 + F + +I K A AG+NK + H R AT+ GA + Sbjct: 287 KTPDDHVFDL-----PSPAMVNILIKPWAKAAGINKRFTFHTARHTFATMMLTLGADLYT 341 Query: 307 LMATYGWKTVDQAETYTKGADRIR 330 G V + Y K ++ + Sbjct: 342 TSKLLGHADVKMTQVYAKIINQKK 365 >gi|254478707|ref|ZP_05092078.1| tyrosine recombinase XerD [Carboxydibrachium pacificum DSM 12653] gi|214035394|gb|EEB76097.1| tyrosine recombinase XerD [Carboxydibrachium pacificum DSM 12653] Length = 290 Score = 110 bits (274), Expect = 4e-22, Method: Composition-based stats. Identities = 38/248 (15%), Positives = 92/248 (37%), Gaps = 19/248 (7%) Query: 85 GSLAVNSRISFESYFDQIIRKSGD-----FDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139 L+ N+ S+ +Q + + +K T + ++ + + ++ + L+S Sbjct: 17 KRLSKNTLESYSRDVEQFLTYMNEHGINFCSAKKSTIVNYLYFLKQQGKSQATISRALSS 76 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLA 195 ++ + + ++ + +P + PK + + T E + SF +G + + Sbjct: 77 IKAFYHYLFAKKKIEEDPSYGINAPKVEKKEPVTLTVEQVDMLLSFDFGKDEKGLRDKAL 136 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA------MTP 249 E + SGL+ S+ ++ + I + +G + + + L P Sbjct: 137 IELMYASGLKVSEVISLKIEDVNLASGYIVVR-SGKERVIPIGSYAVAALQEYIEKGRKP 195 Query: 250 IGKE-TFFINNDKQKMNATQFSIWFKAKATKA--GVNKSAHGVRKFSATISADAGATAHE 306 E F+N +++ K A K G++ + + +RK A GA Sbjct: 196 RKGEKALFLNLRGKRLTRQGCWKIIKEYADKISPGLSLTPNILRKSFAQHMLQNGADLKT 255 Query: 307 LMATYGWK 314 + G++ Sbjct: 256 VQEMLGYE 263 >gi|326403661|ref|YP_004283743.1| tyrosine recombinase XerD [Acidiphilium multivorum AIU301] gi|325050523|dbj|BAJ80861.1| tyrosine recombinase XerD [Acidiphilium multivorum AIU301] Length = 320 Score = 110 bits (274), Expect = 4e-22, Method: Composition-based stats. Identities = 45/271 (16%), Positives = 85/271 (31%), Gaps = 21/271 (7%) Query: 75 ISEYRKSA-HWGSLAVNSRISFESYFDQI-----IRKSGDFDYRKITTKHIRSGVESRKH 128 I + +S A N+ +++++ R G + + G+ + Sbjct: 23 IEAFLESMVAERGAARNTILAYQADLADFAAFCASRGHGPAEADAASVADYLGGLATAGL 82 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 + + + L+S+R ++ +R A +P PK + ++ ++ + + Sbjct: 83 SARTQARRLSSLRQFQRFLLRDGQRADDPTALTSSPKLARTLPKTISEAEVDALLTAAAA 142 Query: 189 -----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDGFM 242 G E L +G+R S+ L + ++ K G V L Sbjct: 143 MPGQAGRVAEAGLEILYATGMRISELLVLPANALSTDASALLIKGKGGRERIVPLSAAAR 202 Query: 243 KLLAMT-----PIGKETFFINND-KQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFS 293 A F M F+ K A AG++ S H +R Sbjct: 203 DAAARLREMNRKRPSRHLFPGRRMGFPMTRQAFARQLKRVAVMAGIHPARVSPHSLRHAF 262 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTK 324 AT GA L G + + YT Sbjct: 263 ATHLLARGADLRSLQTLLGHADISTTQIYTH 293 >gi|242237763|ref|YP_002985944.1| site-specific tyrosine recombinase XerC [Dickeya dadantii Ech703] gi|242239427|ref|YP_002987608.1| site-specific tyrosine recombinase XerC [Dickeya dadantii Ech703] gi|242129820|gb|ACS84122.1| integrase family protein [Dickeya dadantii Ech703] gi|242131484|gb|ACS85786.1| integrase family protein [Dickeya dadantii Ech703] Length = 366 Score = 110 bits (274), Expect = 4e-22, Method: Composition-based stats. Identities = 57/331 (17%), Positives = 110/331 (33%), Gaps = 32/331 (9%) Query: 49 SALTGSTPKREYINSPRKKPTTLKWLI---SEYRKSAHWGSLAVNSRISFESYFDQIIRK 105 AL P P +L L+ +R+ +W + ++ + F + Sbjct: 9 DALLTVDDVYRKPIGPASDPKSLYALLLRFVAWRRERNWSETTLKTQTHHQYRFILWAAE 68 Query: 106 SGDFDYRKIT-------TKHIRSGVESRKH--TPSSAIQFLTSMRVLFKWAVRQEYVAIN 156 G R IT +H+ + + + L + V F W R + + Sbjct: 69 RGLHYGRDITLPILEHYQRHLYQYRKPNGEPLSTRTQRSQLGPLVVWFGWMTRHHLLLAD 128 Query: 157 PCLSVERPKRKTEGI-RPWTKEDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCR 211 P + P+ + + D++Q + G + R E L +G+R + Sbjct: 129 PASGLVLPRLEKRLPRHILSVADVEQVLALPDLTTLQGIRDRALMELLWSTGIRRGEVAV 188 Query: 212 AGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLL-----AMTP-----IGKETFFINN 259 V + +I +I K + + ++ L A+ P F+ Sbjct: 189 LEVYSVDASRHIVTIVQGKGKKDRVIPVGQRALRWLTYYVQAVRPQLLVNPHCPALFVAL 248 Query: 260 DK-QKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTV 316 D + + + +G+ K S H R AT + GA + A G +V Sbjct: 249 DGVEGLTPNGITNLVSHYIKASGIAKWGSCHLFRHAMATQMLENGADLRWIQAMLGHASV 308 Query: 317 DQAETYTKGADRIRLGIKNSRRISSVVDSDD 347 + + YT+ + R + S + DSD+ Sbjct: 309 ESTQIYTQVSIRALQAVHASTHPAEQPDSDE 339 >gi|172057600|ref|YP_001814060.1| integrase family protein [Exiguobacterium sibiricum 255-15] gi|171990121|gb|ACB61043.1| integrase family protein [Exiguobacterium sibiricum 255-15] Length = 347 Score = 110 bits (274), Expect = 4e-22, Method: Composition-based stats. Identities = 47/322 (14%), Positives = 99/322 (30%), Gaps = 53/322 (16%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI--RSGVE------ 124 I Y + + + + FD + + I + I + +E Sbjct: 32 DFIRSYIDHLASKNFSKATMRRYVYDFDSFFQFVAEASGESIQARDITQEAFLEIDGSGI 91 Query: 125 ---------SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175 ++++ PS + L++++ LF+ + ++ NP + RPK+ T Sbjct: 92 AAYAEYLALTKQNAPSVINRKLSALQSLFRHLIDIGVLSENPVAKINRPKQAKRDPVYLT 151 Query: 176 KEDMQQF-------------KSFWSEGSQPRLA--FEFLLYSGLRCSDSCRAGVQHLQNN 220 K + + ++ E + R F+ L YSG+R S+ + + + Sbjct: 152 KREWDELMQLLPSNVEMNAREATHYERDRVRDITLFQLLGYSGMRLSEMTQLTWNAVDFH 211 Query: 221 IFSIKT-QKTGTIITVELPDGFMKLLAMTPI------GKETFFINNDKQKMNATQFSIWF 273 +I+ K + L L + ++ Sbjct: 212 EGTIRVIGKGNKERVIPLAKPVRVALRKFAAHYSLTMRGPEPIFQKQGKALSPRAVQHIL 271 Query: 274 KAKATKAGVNK--------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 K + + H +R AT A G + G ++V + Y Sbjct: 272 KRHVDRLRPVLPFLERKQITPHKLRHTFATRLATGGVDVLTIQQLLGHESVATTQVYAHI 331 Query: 326 ADRIRLGIKNSRRISSVVDSDD 347 DR + +R + DS+ Sbjct: 332 GDREK------KRAIELFDSER 347 >gi|326773392|ref|ZP_08232675.1| tyrosine recombinase XerD [Actinomyces viscosus C505] gi|326636622|gb|EGE37525.1| tyrosine recombinase XerD [Actinomyces viscosus C505] Length = 311 Score = 110 bits (274), Expect = 4e-22, Method: Composition-based stats. Identities = 46/277 (16%), Positives = 96/277 (34%), Gaps = 37/277 (13%) Query: 85 GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVE--------SRKHTPSSA 133 L+ ++ ++E + +R G + ++ + +E +R SSA Sbjct: 16 RGLSPHTLSAYERDLGRYLRYLRSAGISAPQDVSRNDVAGFLEVLRTGSDGARPLASSSA 75 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-----SE 188 + +T++R K+ + + + +P +V P+ + +++ + Sbjct: 76 SRTVTAVRGWHKFLLAEGTTSEDPSATVRPPQPGRRLPKALGVDEVCRLLEAAGVDDSPV 135 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVEL-------PDG 240 + R E L +G R S++ V L + ++ K V + D Sbjct: 136 SLRDRALLEVLYATGARISEAVGLVVDDLDTDSRLLRLFGKGRKERVVPMGAYAWEALDA 195 Query: 241 F----MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---------NKSAH 287 + +LA G F+N + ++ + A +AG+ S H Sbjct: 196 YLVRGRPVLAEKGRGVPQVFLNTLGRPLSRQSAWAVLQQAAERAGLIGTDGADERRISPH 255 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 +R AT GA + G +V + YTK Sbjct: 256 TLRHSFATHLLAGGADVRVVQEMLGHASVTTTQIYTK 292 >gi|257085103|ref|ZP_05579464.1| phage integrase [Enterococcus faecalis Fly1] gi|256993133|gb|EEU80435.1| phage integrase [Enterococcus faecalis Fly1] gi|315168954|gb|EFU12971.1| tyrosine recombinase XerC [Enterococcus faecalis TX1341] Length = 299 Score = 110 bits (274), Expect = 4e-22, Method: Composition-based stats. Identities = 39/267 (14%), Positives = 96/267 (35%), Gaps = 29/267 (10%) Query: 85 GSLAVNSRISFE---SYFDQIIRKSGDFDY---RKITTKHIRSGVESRKHTPSSAIQFLT 138 + ++ +++ +F ++ SG+ +Y + + S + ++++ +S + + Sbjct: 18 RGYSEKTKKAYQEDIQHFFSFLKTSGNDNYLTVEHLDVRAYLSELYDQEYSRNSISRKIA 77 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRL 194 S+R +++ ++ E + NP V K++ R + +++M + + Sbjct: 78 SLRSFYQFLLKNEAIQENPFSYVHMKKKQLRLPRFFYEKEMDALFESAQGEQPLDLRNQA 137 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-ITVE------------LPDGF 241 E L +G+R S+ V + + G V L +G Sbjct: 138 LLEVLYGTGIRVSECANLTVDAVDFQASVLLVHGKGNKDRYVPFGSFAQDALKDYLENGR 197 Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQ----FSIWFKAKATKAGVNKSAHGVRKFSATIS 297 L+ F+N+ +++ T + K + A ++ H +R AT Sbjct: 198 ALLMTKYQKKHPYIFVNHHGEQITPTGIEYVLNQLIKKSSLNAEIH--PHMLRHTFATHL 255 Query: 298 ADAGATAHELMATYGWKTVDQAETYTK 324 + GA + G + + Y Sbjct: 256 LNNGADMRTVQELLGHANLSTTQIYAH 282 >gi|326790507|ref|YP_004308328.1| integrase family protein [Clostridium lentocellum DSM 5427] gi|326541271|gb|ADZ83130.1| integrase family protein [Clostridium lentocellum DSM 5427] Length = 392 Score = 110 bits (274), Expect = 4e-22, Method: Composition-based stats. Identities = 51/315 (16%), Positives = 103/315 (32%), Gaps = 54/315 (17%) Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK--SGDFDYRKITTKHIRSGV 123 KK TL L+ ++ + S+++ + + S ++ I+ G D +KI + ++ Sbjct: 62 KKRITLSDLMYDHLFTNTKASVSLGTFERYMSLYNTHIKDSALGKRDIQKILQRDVQQFF 121 Query: 124 ESRKHTPSSAIQFLT-SMRVLFKWAVRQEYVAINPCLSVERPKRKT--EGIRPWTKEDMQ 180 S+ S ++ L + F + +++ INP + PK + I T E+ + Sbjct: 122 NSKTELSSKSLSMLKYLLNQSFDHGIANQFIRINPMKKITLPKSTYVEKEIEVLTHEEQK 181 Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQ----------- 227 F +E L F L++G+R + ++ +++ +K Sbjct: 182 AFMGVVNESFYKML-FTVALHTGMRVGEIMALKWHNVDLIDHMIHVKESSRLVKEYDSEG 240 Query: 228 -----------KTGTII-TVELPDGFMKLLAMTPI-----GKETFFINNDKQKMNATQFS 270 KT I + + + L + F N+ ++ + Sbjct: 241 NGEDKVITKSPKTKAGIRDIPIHPSLSEELTAYKAEHNGQDDDYVFKNSKGNQIKYDSIA 300 Query: 271 IWFKAKATKAGV-----------------NKSAHGVRKFSATISADAGATAHELMATYGW 313 K KA + + HG+R AT + G + G Sbjct: 301 KAHKLLCEKAKIRPYTEIGSNGESIIKYKGITFHGIRHSFATRLIEQGVDVKTVSQLLGH 360 Query: 314 KTVDQA-ETYTKGAD 327 V Y D Sbjct: 361 TDVKITLNRYVHSTD 375 >gi|293380240|ref|ZP_06626321.1| putative tyrosine recombinase XerC [Lactobacillus crispatus 214-1] gi|290923207|gb|EFE00129.1| putative tyrosine recombinase XerC [Lactobacillus crispatus 214-1] Length = 302 Score = 110 bits (274), Expect = 4e-22, Method: Composition-based stats. Identities = 41/261 (15%), Positives = 99/261 (37%), Gaps = 24/261 (9%) Query: 88 AVNSRISFESYF---DQIIRKSGDFD----YRKITTKHIRSGVESRKHTPSSAIQFLTSM 140 + + +++++ ++ ++G F R+ + + RK SS ++ ++S+ Sbjct: 22 SAKTVLAYQTDLHEAERFWHENGGFPGWTKVRERDIQVYLQHLAERKLARSSQLRKMSSL 81 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRLAF 196 +++ R++ VAI+P + + + + + + + +++Q + F Sbjct: 82 HSFYRFLTRRKLVAIDPTQGITLRRGEKKLPQFFYQPELKQVFDSLKGNKPLTMRNLAMF 141 Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-ITVELPDGFMKLL-----AMTP- 249 E +G+R S+ + L ++ +I G V D K L P Sbjct: 142 ELFYATGMRVSEVSNLTLNQLDLDLQTILVHGKGNKDRYVAFDDKTKKSLIAYLENARPL 201 Query: 250 ----IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGAT 303 ++ F+NN + + + +AG++ H +R AT + GA Sbjct: 202 LLKNDDEQHVFLNNQGTGITSRGIETVMQKTFNQAGISGKVHPHELRHSFATAMLNNGAD 261 Query: 304 AHELMATYGWKTVDQAETYTK 324 + G ++ + YT Sbjct: 262 LRSVQELLGHSSLSATQIYTH 282 >gi|269961534|ref|ZP_06175897.1| tyrosine recombinase XerC [Vibrio harveyi 1DA3] gi|269833763|gb|EEZ87859.1| tyrosine recombinase XerC [Vibrio harveyi 1DA3] Length = 269 Score = 110 bits (274), Expect = 4e-22, Method: Composition-based stats. Identities = 37/228 (16%), Positives = 79/228 (34%), Gaps = 19/228 (8%) Query: 111 YRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170 R++ K +R G+ SS L+S+R F + + + ++ NP V P++K Sbjct: 21 VRQLAGKGMREGM-----KASSLATRLSSLRSFFDFLILRGEMSANPAKGVSAPRKKRPL 75 Query: 171 IRPWTKEDMQQFKSF---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT- 226 + +++ Q + R E + +GLR ++ V+ +Q ++ Sbjct: 76 PKNLDVDEVNQLLEVNEDDPLAVRDRAMMELMYGAGLRLAELVSVDVRDVQLRSGELRVI 135 Query: 227 QKTGTIITVE--------LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKAT 278 K V + + G+ F++ +++ Sbjct: 136 GKGDKERKVPFSGMATEWVGKWLRVRGDLAAPGEPALFVSKLGTRISHRSVQKRMAEWGQ 195 Query: 279 KAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 K V + S H +R AT ++ + G + + + YT Sbjct: 196 KQSVASHISPHKLRHSFATHMLESSNNLRAVQELLGHENISTTQIYTH 243 >gi|58337280|ref|YP_193865.1| integrase-recombinase [Lactobacillus acidophilus NCFM] gi|227903866|ref|ZP_04021671.1| integrase-recombinase [Lactobacillus acidophilus ATCC 4796] gi|58254597|gb|AAV42834.1| integrase-recombinase [Lactobacillus acidophilus NCFM] gi|227868257|gb|EEJ75678.1| integrase-recombinase [Lactobacillus acidophilus ATCC 4796] Length = 302 Score = 110 bits (274), Expect = 4e-22, Method: Composition-based stats. Identities = 39/275 (14%), Positives = 107/275 (38%), Gaps = 26/275 (9%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYF---DQIIRKSGDFD-YRKITTKHIRSGVE---SR 126 L Y ++ + + S+++ ++ ++++G ++ ++ IT + I+ ++ R Sbjct: 10 LFISYLQNER--HYSSKTIASYKTDLLEVEKFLKENGGYNGWKNITERDIQLYLQHLSDR 67 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 K SS ++ ++S+ +++ R++ V ++P + + + + + + +++Q Sbjct: 68 KLARSSQLRQMSSLHSFYRFLTRRKIVQVDPTQQITLRRGEKKLPEFFYEPEIKQVFDSL 127 Query: 187 ----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPD-- 239 + F+ +G+R S+ + + + +I K V D Sbjct: 128 SGDKPLTVRNLALFQLFYATGMRVSEVSSLTLNQIDLTMQTILVHGKGKKDRYVAFDDKT 187 Query: 240 --GFMKLLAMTPI------GKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGV 289 K L + + F++N + ++ + +AG++ H + Sbjct: 188 KRSLTKYLEIARPKLLKNEDEPHVFLSNLGKPISNRGIQYVMQKTFNQAGISGKVHPHEL 247 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 R AT + GA + G ++ + YT Sbjct: 248 RHTFATAMINNGADLRSVQELLGHSSLSATQIYTH 282 >gi|309780244|ref|ZP_07674995.1| tyrosine recombinase XerC [Ralstonia sp. 5_7_47FAA] gi|308920947|gb|EFP66593.1| tyrosine recombinase XerC [Ralstonia sp. 5_7_47FAA] Length = 328 Score = 110 bits (274), Expect = 4e-22, Method: Composition-based stats. Identities = 52/289 (17%), Positives = 97/289 (33%), Gaps = 40/289 (13%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIR----KSGDFDYRKITTKHIRSGVESR--- 126 I+ Y + + L+ ++ S+ + R + + D ++ + HIR + Sbjct: 19 IAAYLDALKFERQLSPHTLESYTRELAVLQRLGAQHAANVDLTQLQSHHIRRMMAQLHGD 78 Query: 127 KHTPSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQ 181 + S + L++ R FKW A+R V NP V PK + + E M+Q Sbjct: 79 GLSGRSIARALSAWRGWFKWMALRDAAVTANPVDGVRAPKSPKRLPKALSVEQAVALMEQ 138 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN------IFSIKTQ------KT 229 E + R E GLR S+ ++H++ ++ + K Sbjct: 139 LPGDDPETVRDRAVNELFYSCGLRLSELVSLDMRHVKAGAYESASWLDLEAREVQVLGKG 198 Query: 230 GTIITVELP-------------DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAK 276 TV + + P F++ +++ Q + K Sbjct: 199 SKRRTVPVGTKAAEALAAWLAVRAQLARPDAAPEDAHALFLSPRGKRLAQRQIQLRMKRN 258 Query: 277 ATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 A AGV H +R AT + + G ++ + YT Sbjct: 259 AIAAGVPADVHPHVLRHSFATHMLQSSGDLRAVQELLGHASIASTQVYT 307 >gi|325678336|ref|ZP_08157958.1| site-specific recombinase, phage integrase family [Ruminococcus albus 8] gi|324109957|gb|EGC04151.1| site-specific recombinase, phage integrase family [Ruminococcus albus 8] Length = 377 Score = 110 bits (274), Expect = 4e-22, Method: Composition-based stats. Identities = 50/293 (17%), Positives = 95/293 (32%), Gaps = 44/293 (15%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK--- 127 + E+ ++ +L S + +++ G KI +HI+ V Sbjct: 69 FEAFAEEWLETYAKLNLRNTSYERMKQLRNRVYPAIGHMRMDKIKVRHIQQFVYDLAVNG 128 Query: 128 --------HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179 + + + L+ + +F +AV+ E + NPC V PK + + +T E + Sbjct: 129 KSFKNGKPLSRKTVVHHLSFISDVFSYAVKMELLTDNPCRRVTVPKGEKKEKEIYTLEQV 188 Query: 180 QQFKSFW-SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ----------------NNIF 222 +Q + + R F +YSG R + + + Sbjct: 189 EQLFNLLEDAPLKYRTFFTLAIYSGFRRGELLGLEWKDIDWDNCVISVKRTSNYTAEKGI 248 Query: 223 SIKTQKT-GTIITVELPDGFMKLLAMTPIGK--------------ETFFINNDKQKMNAT 267 T KT + +++ P M LL + + F+ D + MN Sbjct: 249 YTDTTKTKKSQRSLKFPMVVMDLLRAFKAEQDEERERIGDKWQDYDRLFVKWDGRPMNNN 308 Query: 268 QFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319 WF K + H +R F A+ + G A + G + Sbjct: 309 TPYFWFNEFCEKNNFPFRDIHSLRHFYASALINEGVDAAAVSGALGHSVISTT 361 >gi|196040606|ref|ZP_03107905.1| site-specific recombinase, phage integrase family [Bacillus cereus NVH0597-99] gi|196028396|gb|EDX67004.1| site-specific recombinase, phage integrase family [Bacillus cereus NVH0597-99] Length = 370 Score = 110 bits (274), Expect = 4e-22, Method: Composition-based stats. Identities = 44/269 (16%), Positives = 86/269 (31%), Gaps = 36/269 (13%) Query: 91 SRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH---TPSSAIQFLTSMRVLFKW 146 + + Y +II G+ K+T+ H+++ V S + + + + +R + Sbjct: 86 TAKVLKGYLKSRIIPTLGNIKLAKLTSLHMQNYVNSLRDDGLKRGTIEKIIKIIRNSLEH 145 Query: 147 AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRC 206 A+ E + N + PK E + W + ++Q F + S+ + F L +G+R Sbjct: 146 AIDLELITKNVAAKTKLPKGDKEELIVWNEHEVQSFLKAAQD-SRYSIVFHMALVTGMRQ 204 Query: 207 SDSCRAGVQHLQNNIFSIK--------------TQKTGTIITVELPDG-----FMKLLAM 247 + + + + KT + + L K A+ Sbjct: 205 GELLGLRWKDVDLEKGHLTISQTLSHDGKTFLLGGKTKSSLRKILLPASTVAKLKKHRAV 264 Query: 248 TPIGK----------ETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATI 296 K + +N A KA V K H +R AT+ Sbjct: 265 VLKEKLSQGEEYQDNDLVMCTPSGTPINPANVRRSLNALIKKAAVPKIRFHDLRHTHATL 324 Query: 297 SADAGATAHELMATYGWKTVDQA-ETYTK 324 G + G + +TY+ Sbjct: 325 LLAKGVNVKVISERLGHSNIKITLDTYSH 353 >gi|300087795|ref|YP_003758317.1| integrase family protein [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299527528|gb|ADJ25996.1| integrase family protein [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 328 Score = 110 bits (274), Expect = 4e-22, Method: Composition-based stats. Identities = 46/290 (15%), Positives = 100/290 (34%), Gaps = 47/290 (16%) Query: 86 SLAVNSRISFES----------------YFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129 +L+ + ++++ Y +Q D K + + + + Sbjct: 26 NLSPRTIRNYKNDIIGNQQKGEPHGFFQYLEQHRLSFP-SDVDKYVIRGYIAWLLEQGVV 84 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER----------PKRKTEGIRPWTKEDM 179 SS ++ L+++R LF++ +R+E + +P L V R K T ++M Sbjct: 85 KSSVVRKLSAIRSLFRYLLREEIITESP-LPVTRKHGGRLSAFSIKLDKRLPSFLTVDEM 143 Query: 180 QQF----KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235 ++ ++ G + + E + +GLR S+ V + ++ G + Sbjct: 144 ERLLEAPETSKPVGLRDKAIMEMIYAAGLRISELSDIKVSQVDYYSRELRVTGKGQKERL 203 Query: 236 EL------------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283 + + LA ++ F+N ++ A AG+ Sbjct: 204 VIIGQPAADAVKKYLEKARPKLAKAERATDSLFLNYRGGSLSVRSMQKLILRYARIAGIR 263 Query: 284 K--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIR 330 + H +R AT D GA + G ++ + YT ++ R Sbjct: 264 QEVHPHLLRHSFATHLLDGGADLRVVQELLGHSSLSTTQIYTHVSRNQAR 313 >gi|229545742|ref|ZP_04434467.1| site-specific recombinase XerD [Enterococcus faecalis TX1322] gi|229309192|gb|EEN75179.1| site-specific recombinase XerD [Enterococcus faecalis TX1322] Length = 299 Score = 110 bits (274), Expect = 4e-22, Method: Composition-based stats. Identities = 39/267 (14%), Positives = 96/267 (35%), Gaps = 29/267 (10%) Query: 85 GSLAVNSRISFE---SYFDQIIRKSGDFDY---RKITTKHIRSGVESRKHTPSSAIQFLT 138 + ++ +++ +F ++ SG+ +Y + + S + ++++ +S + + Sbjct: 18 RGYSEKTKKAYQEDIQHFFLFLKTSGNDNYLTVEHLDVRAYLSELYDQEYSRNSISRKIA 77 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRL 194 S+R +++ ++ E + NP V K++ R + +++M + + Sbjct: 78 SLRSFYQFLLKNEAIQENPFSYVHMKKKQLRLPRFFYEKEMDALFESAQGEQPLDLRNQA 137 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-ITVE------------LPDGF 241 E L +G+R S+ V + + G V L +G Sbjct: 138 LLEVLYGTGIRVSECANLTVDAVDFQASVLLVHGKGNKDRYVPFGSFAQDALKDYLENGR 197 Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQ----FSIWFKAKATKAGVNKSAHGVRKFSATIS 297 L+ F+N+ +++ T + K + A ++ H +R AT Sbjct: 198 ALLMTKYQKKHPYVFVNHHGEQITPTGIEYVLNQLIKKSSLNAEIH--PHMLRHTFATHL 255 Query: 298 ADAGATAHELMATYGWKTVDQAETYTK 324 + GA + G + + Y Sbjct: 256 LNNGADMRTVQELLGHANLSTTQIYAH 282 >gi|282856243|ref|ZP_06265526.1| tyrosine recombinase XerC [Pyramidobacter piscolens W5455] gi|282586002|gb|EFB91287.1| tyrosine recombinase XerC [Pyramidobacter piscolens W5455] Length = 290 Score = 110 bits (274), Expect = 4e-22, Method: Composition-based stats. Identities = 34/230 (14%), Positives = 79/230 (34%), Gaps = 9/230 (3%) Query: 104 RKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER 163 +++G + + + + SS + L++++ + + + +A +P S+ Sbjct: 40 QETGPLEITTPLIRAFLRSLAGFGYANSSIARKLSAVKAFELYLLEKGLIAADPAASIRS 99 Query: 164 PKRKTEGIRPWTKEDMQQF-KSFWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHLQNN 220 P+ R +++ +++ + W R E + G+R ++ + + Sbjct: 100 PRLPERLPRALSRDGIERLIQEAWKIKPCLRNGTILEVMYGCGVRVAELVSLRWDDVDVD 159 Query: 221 IFSIKTQKTG-TIITVELPDGFMKLLAMTPIGKET----FFINNDKQKMNATQFSIWFKA 275 +K + G V + L F + Sbjct: 160 ERWLKVRGKGDKERLVPFGRYAKEALTRWKAECLPEPGFLFPGKGGAAITVRTVHRLVVQ 219 Query: 276 KATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 A AG+ N + H VR AT + GA+ + L G +++ + Y K Sbjct: 220 AARNAGLENVTPHSVRHSFATHMLEGGASLNVLQELLGHESLLTTQRYLK 269 >gi|225568371|ref|ZP_03777396.1| hypothetical protein CLOHYLEM_04448 [Clostridium hylemonae DSM 15053] gi|225162819|gb|EEG75438.1| hypothetical protein CLOHYLEM_04448 [Clostridium hylemonae DSM 15053] Length = 330 Score = 110 bits (274), Expect = 4e-22, Method: Composition-based stats. Identities = 46/284 (16%), Positives = 103/284 (36%), Gaps = 17/284 (5%) Query: 72 KWLIS--EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129 WL+ E+ S + + + +++ + + + IT +I + + K Sbjct: 50 SWLVDLEEFLMSKALEGKSPGTVKRYRYELYRLLSYI-NKNVKDITDGNISGYMRTYKAI 108 Query: 130 PSSAIQFLTSMRVLFK----WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 Q L ++R ++ W ++ + NP VE K + + +P+T E+ + Sbjct: 109 RQVTNQTLKNVRAVYSSFFIWLRDRDRIRKNPMALVEAIKVEQKIRKPYTDEERELLLRS 168 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDG---- 240 + + EF + +R S+ + + + G TV L D Sbjct: 169 CKT-LRDKAMMEFFYSTAVRVSELAALNREDVHFVSKDLIVMGKGNKERTVYLNDRTNMY 227 Query: 241 FMKLLAMTPIGKETFFINNDK--QKMNATQFSIWFKAKATKAGVNKS-AHGVRKFSATIS 297 + L + F++ K ++ T + AGV ++ H R+ +AT + Sbjct: 228 MKEYLESRTDSNQALFVSLKKPHGRLGKTGIEDIIRRTGQIAGVERAYPHRFRRTAATNA 287 Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341 + G E+ G ++ Y D+ + + + +S+ Sbjct: 288 LNRGMPVQEVAQLLGHAKLETTMVYC-SVDQAGVKYHHQKYLSA 330 >gi|94495775|ref|ZP_01302355.1| integrase [Sphingomonas sp. SKA58] gi|94425163|gb|EAT10184.1| integrase [Sphingomonas sp. SKA58] Length = 310 Score = 110 bits (274), Expect = 4e-22, Method: Composition-based stats. Identities = 49/295 (16%), Positives = 100/295 (33%), Gaps = 19/295 (6%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130 LI + + + N+ +++ + G + + Sbjct: 6 AALIDRFLEMMAAERGASRNTLLAYRTDLTGAGGLLGGLAGASKEGLGTLATHWASLAGS 65 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM--------QQF 182 S A + +++R + + + A NP +++ RP + + + ++ ++ Sbjct: 66 SVARKA-SALRAFYGFLEEEGLRADNPSVALPRPVTRRPLPKILSTTEVDRLFALIAERL 124 Query: 183 KSFWSEGSQPRLA--FEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIITVELPD 239 + RL+ E L SGLR ++ + L + F I K V + D Sbjct: 125 EVAHPAPLDLRLSALIELLYGSGLRATELVSLPRRALAADRPFLILKGKGARERLVPISD 184 Query: 240 GFMKLLAMTPI---GKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFS 293 ++ + G + + K ++ + KA A AG+ S H +R Sbjct: 185 RARAAVSAWLVHVPGDSAWLFPSGKSHLSRIRLYQLVKALAGAAGIAPERVSPHVLRHAF 244 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348 AT + GA L A G + + YT R + + N R + + P Sbjct: 245 ATHLLEGGADLRALQAMLGHADIGTTQIYTHVDSRRLVELVNQRHPLATMAVRQP 299 >gi|294789666|ref|ZP_06754899.1| tyrosine recombinase XerC [Simonsiella muelleri ATCC 29453] gi|294482378|gb|EFG30072.1| tyrosine recombinase XerC [Simonsiella muelleri ATCC 29453] Length = 302 Score = 110 bits (274), Expect = 4e-22, Method: Composition-based stats. Identities = 37/266 (13%), Positives = 82/266 (30%), Gaps = 16/266 (6%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKS-GDFDYRKITTKHIRSGVESRKHTPSSA 133 + Y + ++ ++ ++ + + + + R P S Sbjct: 16 LDAYLTQLTQQGKSPHTLDAYRRDLIELANMLPENQQPTRNDVVRVLKQLSQRGQHPRSL 75 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS--- 190 + LTS R ++ V ++ NP ++ PK + +E + Q S Sbjct: 76 ARKLTSWRQYAEYLVHLGELSSNPIAHIKAPKPPERLPKAIDREQINQMIDQDIPQSDDV 135 Query: 191 ---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-ITVELPDGFMKLLA 246 + E SGLR ++ V + + + G V L + + Sbjct: 136 LAIRDHAMIELFYGSGLRLAELHALNVDDVLLDAGWVMVSGKGKRQRQVPLTRPSIAAID 195 Query: 247 M------TPIGKETFFINNDKQKMNATQFSIWFKAKAT--KAGVNKSAHGVRKFSATISA 298 G+ F + ++ Q + + + +A + S H +R A+ Sbjct: 196 AYLSTRYAVDGELALFTSRHGTRLCTRQIAKRLEIWSQNNQANQHISPHMLRHSYASHLL 255 Query: 299 DAGATAHELMATYGWKTVDQAETYTK 324 A + G + + + Y K Sbjct: 256 QASRDVRAVQELLGHQNLSTTQIYAK 281 >gi|108760213|ref|YP_631219.1| phage integrase family site specific recombinase [Myxococcus xanthus DK 1622] gi|34222772|sp|P59818|XERC_MYXXA RecName: Full=Tyrosine recombinase xerC gi|122981099|sp|Q1D804|XERC_MYXXD RecName: Full=Tyrosine recombinase xerC gi|27804888|gb|AAO22922.1| integrase/recombinase [Myxococcus xanthus] gi|108464093|gb|ABF89278.1| site-specific recombinase, phage integrase family [Myxococcus xanthus DK 1622] Length = 300 Score = 110 bits (274), Expect = 5e-22, Method: Composition-based stats. Identities = 48/282 (17%), Positives = 92/282 (32%), Gaps = 26/282 (9%) Query: 69 TTLKWLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKS-GDFDYRKITTKHI----RSG 122 T+L L+ ++R + ++ ++ R ++ H G Sbjct: 2 TSLSPLLEKFRAHLEDEKGSSPHTVRNYLIDLVDFERYLVERMKLSLLSGTHAAIRGYLG 61 Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 S H P+S + L S++ +K+ VRQ+ + +P V+ PK + E++ Sbjct: 62 TLSTDHAPASRARRLASIKSFYKYLVRQKLLPASPAKLVKSPKLPKTLPKVLPVEEVFAI 121 Query: 183 KSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN-NIFSIKTQKTGTIITVEL 237 G + R E L GLR S+ C + + K V + Sbjct: 122 LDMPDVKTVLGLRDRAILELLYGGGLRISELCGLDLLDIDRSGRIVRVMGKGSKERLVPV 181 Query: 238 PDGFMKLLAMTPIGK-------------ETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284 ++ L + E F+N ++ + K + + Sbjct: 182 NAQSIRALEAYLARRGELLATIRKDQAPEAMFLNFRGGRLTPRSIARHLDTYVLKCALTR 241 Query: 285 --SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 S H +R AT GA + G ++ + YT+ Sbjct: 242 KVSPHAMRHSFATHLLGGGADIRSIQELLGHSSLSTTQRYTQ 283 >gi|320107747|ref|YP_004183337.1| integrase family protein [Terriglobus saanensis SP1PR4] gi|319926268|gb|ADV83343.1| integrase family protein [Terriglobus saanensis SP1PR4] Length = 311 Score = 110 bits (274), Expect = 5e-22, Method: Composition-based stats. Identities = 42/290 (14%), Positives = 87/290 (30%), Gaps = 31/290 (10%) Query: 64 PRKKPTTLKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITT-----K 117 P P T L+ EY L + S++ + Sbjct: 2 PSPAPATNLQLVREYILYLRVERGLRPLTLESYQGDLYAFSEHLDSLHTSLLQATQENIA 61 Query: 118 HIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177 + + S + L+ +R ++W + + + +P L++E P + + Sbjct: 62 SFMAHLREHDQESRSIARKLSCLRGFYRWLLLDKRIHHDPTLNIESPASWKVLPKSLAES 121 Query: 178 DMQQFKSFWSEGSQ----------PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ 227 ++++ + L GLR ++ C V+ L + + + Sbjct: 122 EVREMLDRTGVAAHSQQAGALSLRDHALMNLLYAGGLRAAEICDLRVEDLHLDQQRAQVR 181 Query: 228 KTG-TIITVELPDGFMKLLAM----------TPIGKETFFINNDKQKMNATQFSIWFKAK 276 G V L D ++ L + + F++ + + K+ Sbjct: 182 GKGDKERIVPLADTAVQALEVYLQRGRPQLVAKGLQRALFLSVRGKPLTNQTVWSIVKST 241 Query: 277 ATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 A S H +R AT + GA + G + + YT A Sbjct: 242 NQLA----SPHKLRHSCATHMVEHGADLRSVQTLLGHADIVTTQVYTHLA 287 >gi|320179493|gb|EFW54448.1| Phage integrase [Shigella boydii ATCC 9905] Length = 300 Score = 110 bits (274), Expect = 5e-22, Method: Composition-based stats. Identities = 51/277 (18%), Positives = 95/277 (34%), Gaps = 21/277 (7%) Query: 7 LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHE---STFIPAYMSALTGSTPKREYINS 63 LPP + R+ Y G+ L + I A + L+ S + Sbjct: 12 LPPNLY---IRNNGYYCYRDPRTGKEFGLGRDRRIAITEAIQANIELLSDSGRESLIDRI 68 Query: 64 PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123 TL + Y + + + + S I RK D I+TK + + + Sbjct: 69 KGADSITLHAWLDRYETILSERGIRPKTLLDYASKIRAIRRKLPDKPLTDISTKEVAAML 128 Query: 124 ESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 + + +SA +++ +F+ A+ + +VA NP + K + R E ++ Sbjct: 129 NTYVAEGKAASAKLIRSTLVDVFREAIAEGHVATNPVTATRTAKSEVRRSRLTANEYVEI 188 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP--- 238 + + RLA + + +G R D CR + +N I+ KTG + + L Sbjct: 189 YHAAEPLPIWLRLAMDLAVITGQRVGDLCRMKWSDINDNHLHIEQGKTGAKLAIPLTLTI 248 Query: 239 --------DGFMKLLAMTPIGKETFFINNDKQKMNAT 267 D K ET + ++ Sbjct: 249 DALNISLVDTLQK--CREASSSETIIASKHHDPLSPK 283 >gi|29376202|ref|NP_815356.1| phage integrase family site specific recombinase [Enterococcus faecalis V583] gi|227518833|ref|ZP_03948882.1| site-specific recombinase XerD [Enterococcus faecalis TX0104] gi|227553450|ref|ZP_03983499.1| site-specific recombinase XerD [Enterococcus faecalis HH22] gi|229549931|ref|ZP_04438656.1| site-specific recombinase XerD [Enterococcus faecalis ATCC 29200] gi|255972714|ref|ZP_05423300.1| phage integrase [Enterococcus faecalis T1] gi|256619143|ref|ZP_05475989.1| integrase [Enterococcus faecalis ATCC 4200] gi|256762579|ref|ZP_05503159.1| phage integrase [Enterococcus faecalis T3] gi|256853205|ref|ZP_05558575.1| site-specific recombinase [Enterococcus faecalis T8] gi|256961848|ref|ZP_05566019.1| phage integrase [Enterococcus faecalis Merz96] gi|257082471|ref|ZP_05576832.1| phage integrase [Enterococcus faecalis E1Sol] gi|257086664|ref|ZP_05581025.1| phage integrase [Enterococcus faecalis D6] gi|257416173|ref|ZP_05593167.1| integrase [Enterococcus faecalis AR01/DG] gi|257419375|ref|ZP_05596369.1| phage integrase [Enterococcus faecalis T11] gi|293382913|ref|ZP_06628831.1| tyrosine recombinase XerC [Enterococcus faecalis R712] gi|293389598|ref|ZP_06634055.1| tyrosine recombinase XerC [Enterococcus faecalis S613] gi|300860343|ref|ZP_07106430.1| tyrosine recombinase XerC [Enterococcus faecalis TUSoD Ef11] gi|307274878|ref|ZP_07556041.1| tyrosine recombinase XerC [Enterococcus faecalis TX2134] gi|307291916|ref|ZP_07571785.1| tyrosine recombinase XerC [Enterococcus faecalis TX0411] gi|312907617|ref|ZP_07766608.1| tyrosine recombinase XerC [Enterococcus faecalis DAPTO 512] gi|312910234|ref|ZP_07769081.1| tyrosine recombinase XerC [Enterococcus faecalis DAPTO 516] gi|29343665|gb|AAO81426.1| site-specific recombinase, phage integrase family [Enterococcus faecalis V583] gi|227073746|gb|EEI11709.1| site-specific recombinase XerD [Enterococcus faecalis TX0104] gi|227177426|gb|EEI58398.1| site-specific recombinase XerD [Enterococcus faecalis HH22] gi|229304944|gb|EEN70940.1| site-specific recombinase XerD [Enterococcus faecalis ATCC 29200] gi|255963732|gb|EET96208.1| phage integrase [Enterococcus faecalis T1] gi|256598670|gb|EEU17846.1| integrase [Enterococcus faecalis ATCC 4200] gi|256683830|gb|EEU23525.1| phage integrase [Enterococcus faecalis T3] gi|256711664|gb|EEU26702.1| site-specific recombinase [Enterococcus faecalis T8] gi|256952344|gb|EEU68976.1| phage integrase [Enterococcus faecalis Merz96] gi|256990501|gb|EEU77803.1| phage integrase [Enterococcus faecalis E1Sol] gi|256994694|gb|EEU81996.1| phage integrase [Enterococcus faecalis D6] gi|257158001|gb|EEU87961.1| integrase [Enterococcus faecalis ARO1/DG] gi|257161203|gb|EEU91163.1| phage integrase [Enterococcus faecalis T11] gi|291079578|gb|EFE16942.1| tyrosine recombinase XerC [Enterococcus faecalis R712] gi|291081215|gb|EFE18178.1| tyrosine recombinase XerC [Enterococcus faecalis S613] gi|295113045|emb|CBL31682.1| tyrosine recombinase XerC subunit [Enterococcus sp. 7L76] gi|300849382|gb|EFK77132.1| tyrosine recombinase XerC [Enterococcus faecalis TUSoD Ef11] gi|306496914|gb|EFM66462.1| tyrosine recombinase XerC [Enterococcus faecalis TX0411] gi|306508326|gb|EFM77433.1| tyrosine recombinase XerC [Enterococcus faecalis TX2134] gi|310626645|gb|EFQ09928.1| tyrosine recombinase XerC [Enterococcus faecalis DAPTO 512] gi|311289507|gb|EFQ68063.1| tyrosine recombinase XerC [Enterococcus faecalis DAPTO 516] gi|315027186|gb|EFT39118.1| tyrosine recombinase XerC [Enterococcus faecalis TX2137] gi|315029303|gb|EFT41235.1| tyrosine recombinase XerC [Enterococcus faecalis TX4000] gi|315034051|gb|EFT45983.1| tyrosine recombinase XerC [Enterococcus faecalis TX0017] gi|315145127|gb|EFT89143.1| tyrosine recombinase XerC [Enterococcus faecalis TX2141] gi|315147344|gb|EFT91360.1| tyrosine recombinase XerC [Enterococcus faecalis TX4244] gi|315150456|gb|EFT94472.1| tyrosine recombinase XerC [Enterococcus faecalis TX0012] gi|315158157|gb|EFU02174.1| tyrosine recombinase XerC [Enterococcus faecalis TX0312] gi|315160539|gb|EFU04556.1| tyrosine recombinase XerC [Enterococcus faecalis TX0645] gi|315169812|gb|EFU13829.1| tyrosine recombinase XerC [Enterococcus faecalis TX1342] gi|315172224|gb|EFU16241.1| tyrosine recombinase XerC [Enterococcus faecalis TX1346] gi|315575784|gb|EFU87975.1| tyrosine recombinase XerC [Enterococcus faecalis TX0309B] gi|315580436|gb|EFU92627.1| tyrosine recombinase XerC [Enterococcus faecalis TX0309A] gi|323480809|gb|ADX80248.1| tyrosine recombinase XerC [Enterococcus faecalis 62] gi|327535213|gb|AEA94047.1| tyrosine recombinase XerC [Enterococcus faecalis OG1RF] Length = 299 Score = 110 bits (274), Expect = 5e-22, Method: Composition-based stats. Identities = 39/267 (14%), Positives = 96/267 (35%), Gaps = 29/267 (10%) Query: 85 GSLAVNSRISFE---SYFDQIIRKSGDFDY---RKITTKHIRSGVESRKHTPSSAIQFLT 138 + ++ +++ +F ++ SG+ +Y + + S + ++++ +S + + Sbjct: 18 RGYSEKTKKAYQEDIQHFFSFLKTSGNDNYLTVEHLDVRAYLSELYDQEYSRNSISRKIA 77 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRL 194 S+R +++ ++ E + NP V K++ R + +++M + + Sbjct: 78 SLRSFYQFLLKNEAIQENPFSYVHMKKKQLRLPRFFYEKEMDALFESAQGEQPLDLRNQA 137 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-ITVE------------LPDGF 241 E L +G+R S+ V + + G V L +G Sbjct: 138 LLEVLYGTGIRVSECANLTVDAVDFQASVLLVHGKGNKDRYVPFGSFAQDALKDYLENGR 197 Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQ----FSIWFKAKATKAGVNKSAHGVRKFSATIS 297 L+ F+N+ +++ T + K + A ++ H +R AT Sbjct: 198 ALLMTKYQKKHPYVFVNHHGEQITPTGIEYVLNQLIKKSSLNAEIH--PHMLRHTFATHL 255 Query: 298 ADAGATAHELMATYGWKTVDQAETYTK 324 + GA + G + + Y Sbjct: 256 LNNGADMRTVQELLGHANLSTTQIYAH 282 >gi|167036277|ref|YP_001671508.1| site-specific tyrosine recombinase XerC [Pseudomonas putida GB-1] gi|189030081|sp|B0KQ43|XERC_PSEPG RecName: Full=Tyrosine recombinase xerC gi|166862765|gb|ABZ01173.1| tyrosine recombinase XerC [Pseudomonas putida GB-1] Length = 299 Score = 110 bits (274), Expect = 5e-22, Method: Composition-based stats. Identities = 36/259 (13%), Positives = 88/259 (33%), Gaps = 19/259 (7%) Query: 85 GSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFLT 138 ++ ++ + + D++ ++ G D++ + + +R + + S + L+ Sbjct: 16 RQVSEHTLLGYRRDLDKVIAYCKEHGIADWQALQIQQLRQLIARLHHHGQSSRSLARLLS 75 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW-TKEDMQQFKSFWS---EGSQPRL 194 ++R L+++ R+ +P + PK + + T +Q + + Sbjct: 76 AVRGLYRYLNREGLCQHDPATGLSAPKGERRLPKVLDTDRALQLLDGGVDDDFIARRDQA 135 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPI--- 250 E SGLR S+ + HL ++ K G + + + L Sbjct: 136 ILELFYSSGLRLSELTNLDLDHLDLAAGLVQVLGKGGKARVLPVGRKAREALQAWYRLRG 195 Query: 251 ----GKETFFINNDKQKMNATQFSIWFKAK-ATKAGVNKSAHGVRKFSATISADAGATAH 305 FI +++ + KA + G + H +R A+ ++ Sbjct: 196 IGNPRDRAVFITRQGNRISPQAVRLRVKAAGERELGQHLHPHMLRHSFASHVLESSQDLR 255 Query: 306 ELMATYGWKTVDQAETYTK 324 + G + + YT Sbjct: 256 AVQELLGHADISTTQIYTH 274 >gi|57651821|ref|YP_186127.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus COL] gi|87162376|ref|YP_493842.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88194960|ref|YP_499760.1| site-specific recombinase [Staphylococcus aureus subsp. aureus NCTC 8325] gi|151221374|ref|YP_001332196.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus str. Newman] gi|161509418|ref|YP_001575077.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221142042|ref|ZP_03566535.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus str. JKD6009] gi|253731871|ref|ZP_04866036.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253733510|ref|ZP_04867675.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus TCH130] gi|258452551|ref|ZP_05700557.1| tyrosine recombinase xerC [Staphylococcus aureus A5948] gi|262048146|ref|ZP_06021033.1| hypothetical protein SAD30_1922 [Staphylococcus aureus D30] gi|262051314|ref|ZP_06023537.1| hypothetical protein SA930_2036 [Staphylococcus aureus 930918-3] gi|282920496|ref|ZP_06328217.1| tyrosine recombinase XerC [Staphylococcus aureus A9765] gi|284024245|ref|ZP_06378643.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus 132] gi|294848247|ref|ZP_06788994.1| tyrosine recombinase XerC [Staphylococcus aureus A9754] gi|304381184|ref|ZP_07363837.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|81694641|sp|Q5HGI0|XERC_STAAC RecName: Full=Tyrosine recombinase xerC gi|123003475|sp|Q2FZ30|XERC_STAA8 RecName: Full=Tyrosine recombinase xerC gi|123486192|sp|Q2FHI6|XERC_STAA3 RecName: Full=Tyrosine recombinase xerC gi|172048862|sp|A6QGF2|XERC_STAAE RecName: Full=Tyrosine recombinase xerC gi|189030085|sp|A8Z3T2|XERC_STAAT RecName: Full=Tyrosine recombinase xerC gi|57286007|gb|AAW38101.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus COL] gi|87128350|gb|ABD22864.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87202518|gb|ABD30328.1| site-specific recombinase, putative [Staphylococcus aureus subsp. aureus NCTC 8325] gi|150374174|dbj|BAF67434.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus str. Newman] gi|160368227|gb|ABX29198.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253724281|gb|EES93010.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253728564|gb|EES97293.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus TCH130] gi|257859769|gb|EEV82611.1| tyrosine recombinase xerC [Staphylococcus aureus A5948] gi|259160689|gb|EEW45710.1| hypothetical protein SA930_2036 [Staphylococcus aureus 930918-3] gi|259163712|gb|EEW48267.1| hypothetical protein SAD30_1922 [Staphylococcus aureus D30] gi|269940743|emb|CBI49125.1| putative integrase/recombinase [Staphylococcus aureus subsp. aureus TW20] gi|282594158|gb|EFB99145.1| tyrosine recombinase XerC [Staphylococcus aureus A9765] gi|294825047|gb|EFG41469.1| tyrosine recombinase XerC [Staphylococcus aureus A9754] gi|302751075|gb|ADL65252.1| site-specific recombinase XerC [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304340167|gb|EFM06108.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|315198492|gb|EFU28821.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus CGS01] gi|320140931|gb|EFW32778.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus MRSA131] gi|320144353|gb|EFW36119.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus MRSA177] gi|329313922|gb|AEB88335.1| Tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus T0131] gi|329727838|gb|EGG64289.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus 21189] Length = 298 Score = 110 bits (274), Expect = 5e-22, Method: Composition-based stats. Identities = 37/266 (13%), Positives = 94/266 (35%), Gaps = 22/266 (8%) Query: 85 GSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGVE---SRKHTPSSAIQFLTS 139 + + ++ S++ Q + + + + R+ + S +S + +++ Sbjct: 16 RNFSEHTLKSYQDDLIQFNQFLEQEHLELNTFEYRDARNYLSYLYSNHLKRTSVSRKIST 75 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLA 195 +R +++ + + INP + + PK++ + + +E+M+ E + + R+ Sbjct: 76 LRTFYEYWMTLDENIINPFVQLVHPKKEKYLPQFFYEEEMEALFKTVEEDTSKNLRDRVI 135 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVE--------LPDGFMKLL 245 E L +G+R S+ Q + N ++ K V + + Sbjct: 136 LELLYATGIRVSELVNIKKQDIDFYANGVTV-LGKGSKERFVPFGAYCRQSIENYLEHFK 194 Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATK-AGV-NKSAHGVRKFSATISADAGAT 303 + + +N + + + AGV H +R AT + GA Sbjct: 195 PIQSCNHDFLIVNMKGEAITERGVRYVLNDIVKRTAGVSEIHPHKLRHTFATHLLNQGAD 254 Query: 304 AHELMATYGWKTVDQAETYTKGADRI 329 + + G + YT +++ Sbjct: 255 LRTVQSLLGHVNLSTTGKYTHVSNQQ 280 >gi|254449549|ref|ZP_05062986.1| phage integrase [Octadecabacter antarcticus 238] gi|198263955|gb|EDY88225.1| phage integrase [Octadecabacter antarcticus 238] Length = 320 Score = 109 bits (273), Expect = 5e-22, Method: Composition-based stats. Identities = 44/260 (16%), Positives = 88/260 (33%), Gaps = 23/260 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFD--YRKITTKHIRSGVESRKHTPSSAIQFLTSMRV 142 +L S+ S + G K+ + + + + Q +T ++ Sbjct: 39 RNLGPASQSSHLRACKRFAAWLGRSPETATPDDVKYFQQYLVESGVSICTRNQTMTGVKF 98 Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS 202 LF+ +R+ + + K + +K+++++ + + R+ Sbjct: 99 LFRVTLRR----HDLVAEIFHLKEPVKIPLVLSKKEIKRILAMAPS-LKARVMLSLAYGC 153 Query: 203 GLRCSDSCRAGVQHLQNN--IFSIKTQKTGTIITVELPDGFMKLLAMT------------ 248 G+R + R V + ++ I I K V LP + LL Sbjct: 154 GMRAGEVVRLKVGDIDSDQEIIRIVQSKGRKDRNVMLPSDILGLLRQWWKERPTGQDRDV 213 Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHE 306 P + F + +++ Q S FK A +AG+ K + H +R AT + G Sbjct: 214 PAPERNLFPGYRSKHLSSRQISRLFKQTAQEAGITKPVTLHTLRHSFATHLLERGVDIRV 273 Query: 307 LMATYGWKTVDQAETYTKGA 326 + A G + Y A Sbjct: 274 IQALLGHSKLTTTARYASVA 293 >gi|238020532|ref|ZP_04600958.1| hypothetical protein GCWU000324_00418 [Kingella oralis ATCC 51147] gi|237867512|gb|EEP68518.1| hypothetical protein GCWU000324_00418 [Kingella oralis ATCC 51147] Length = 294 Score = 109 bits (273), Expect = 5e-22, Method: Composition-based stats. Identities = 41/264 (15%), Positives = 88/264 (33%), Gaps = 19/264 (7%) Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG---VESRKHTPSSAI 134 Y + + ++ I++E ++ + + ++ + R P+S Sbjct: 11 YLTEQRQRNRSPHTLIAYERELRELANLLP--ATAQPARRDFQAAFRQLSQRGLHPASLA 68 Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-----G 189 + L++ R + VRQ + NP ++ K+ R ++ + +E Sbjct: 69 RALSAWRQYCDYLVRQGSLKTNPVQDIKALKKPQRLPRAIERDTLNALLDQPAESDDTLA 128 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG----FMKL 244 + + E L SGLR ++ + + + + K V L + Sbjct: 129 LRDQAIAELLYGSGLRLAELAGLNLADVYLDAGWLNVHGKGSKQRQVPLTQSSVALLQQW 188 Query: 245 LAMTPIG--KETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300 LA P + F ++ + Q + A + G + S H +R A A Sbjct: 189 LAQRPAQPHETALFTTQHGTRLGSRQIAKRLDNWAQQHGSPQHISPHMLRHSFAGHLLQA 248 Query: 301 GATAHELMATYGWKTVDQAETYTK 324 + G ++ + YTK Sbjct: 249 SRDIRAVQDLLGHASLSSTQIYTK 272 >gi|206895665|ref|YP_002247136.1| site-specific integrase/recombinase XerD protein [Coprothermobacter proteolyticus DSM 5265] gi|206738282|gb|ACI17360.1| site-specific integrase/recombinase XerD protein [Coprothermobacter proteolyticus DSM 5265] Length = 289 Score = 109 bits (273), Expect = 5e-22, Method: Composition-based stats. Identities = 44/259 (16%), Positives = 90/259 (34%), Gaps = 24/259 (9%) Query: 72 KWLISEYRKSAHWGSL----AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK 127 K L+ EY + W L + + S+ D + I + + + Sbjct: 20 KRLVEEYEQ---WLVLRKQASPRTVRSYLKDVDDFLAFVEQERSTDIEL--FKQFLHDKG 74 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK--TEGIRPWTKEDMQQFKSF 185 +PS+ + L+++ + RQ L ERPK K + ++ D+ Q Sbjct: 75 LSPSTVARKLSAVSSFSAFLRRQGI-----ALEFERPKVKIPQKLMQVPNWNDLDQLVDE 129 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245 + + RLA +L+ GLR S+ + ++ ++ K G + + + + Sbjct: 130 VQDH-EVRLALRMMLHCGLRASEVLELRWSDIGDDYMLVR-GKGGKQRMLPVSEAIRTDI 187 Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAH 305 F + +K + + T+A + H +R AT + A Sbjct: 188 ESIKRKGSYVFCDKKGKKRSRVWLW-----RKTRAFLGTHPHILRHAFATELTNY-ADIR 241 Query: 306 ELMATYGWKTVDQAETYTK 324 + + G + + YT Sbjct: 242 VVQESLGHSDITTTQRYTH 260 >gi|259047877|ref|ZP_05738278.1| phage integrase family site-specific recombinase [Granulicatella adiacens ATCC 49175] gi|259035554|gb|EEW36809.1| phage integrase family site-specific recombinase [Granulicatella adiacens ATCC 49175] Length = 393 Score = 109 bits (273), Expect = 5e-22, Method: Composition-based stats. Identities = 65/357 (18%), Positives = 134/357 (37%), Gaps = 38/357 (10%) Query: 6 RLPPFVTKERTRHGKIIYYFRK--GHGRRI-RLPYPHESTFIP--AYMSALTGSTPKREY 60 R+ P+ + ++G++ Y F+ G + + Y F A +AL + Sbjct: 9 RIKPY----KKKNGQVYYQFKIYYGTNPKTGKKQYTTRRGFESVLAATTALQRLEVELMD 64 Query: 61 INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHI 119 K+ T + L +E+ + + ++ + +YF I+ GD+ IT + Sbjct: 65 TGLVVKQKFTYRELYNEWLVTYQ-KRVRPSTFQATVTYFKKHILPAFGDYYIDTITIQDC 123 Query: 120 RSGVESR-KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR---KTEGIRPWT 175 ++ V + P S + +++FK+A + + NP V+ PK K + ++ + Sbjct: 124 QAQVNRWYSNYPKSTQSYKIYAQMIFKYAQKLNLIEKNPMSLVDLPKSGDFKDDKLKYYD 183 Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ----------------- 218 +E + +F + + F L Y+GLRC ++ + Sbjct: 184 RETLIRFLEYIEPFKEVYTFFYLLSYTGLRCGEAFALTWNDIDFRNHSISVNKTVARSME 243 Query: 219 NNIFSIKTQKTGTIITVELPDGFMKLLAMTP--IGKETF-FINNDKQKMNATQFSIWFKA 275 + S K G T+ + +L++ G ET+ F N + ++ W Sbjct: 244 DKYISQTKTKNGMR-TIRINGSLERLISEWKELSGNETYVFQNRNNSFYSSNTAVYWLNQ 302 Query: 276 KATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIR 330 + + HG R A++ A+AGA ++ G + YT + + Sbjct: 303 ILEGTNFPRITPHGFRHTHASLLAEAGADLKDIQDRLGHGDIQTTANIYTHVTNNKK 359 >gi|107104381|ref|ZP_01368299.1| hypothetical protein PaerPA_01005457 [Pseudomonas aeruginosa PACS2] gi|116053429|ref|YP_793754.1| site-specific tyrosine recombinase XerC [Pseudomonas aeruginosa UCBPP-PA14] gi|218894383|ref|YP_002443253.1| site-specific tyrosine recombinase XerC [Pseudomonas aeruginosa LESB58] gi|254243833|ref|ZP_04937155.1| site-specific recombinase Sss [Pseudomonas aeruginosa 2192] gi|296392138|ref|ZP_06881613.1| site-specific tyrosine recombinase XerC [Pseudomonas aeruginosa PAb1] gi|313106696|ref|ZP_07792914.1| site-specific recombinase [Pseudomonas aeruginosa 39016] gi|122256552|sp|Q02E82|XERC_PSEAB RecName: Full=Tyrosine recombinase xerC gi|254799351|sp|B7V5H1|XERC_PSEA8 RecName: Full=Tyrosine recombinase xerC gi|115588650|gb|ABJ14665.1| site-specific recombinase [Pseudomonas aeruginosa UCBPP-PA14] gi|126197211|gb|EAZ61274.1| site-specific recombinase Sss [Pseudomonas aeruginosa 2192] gi|218774612|emb|CAW30429.1| site-specific recombinase Sss [Pseudomonas aeruginosa LESB58] gi|310879416|gb|EFQ38010.1| site-specific recombinase [Pseudomonas aeruginosa 39016] Length = 303 Score = 109 bits (273), Expect = 5e-22, Method: Composition-based stats. Identities = 39/288 (13%), Positives = 97/288 (33%), Gaps = 24/288 (8%) Query: 85 GSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIR---SGVESRKHTPSSAIQFLT 138 ++ ++ + +I+ K+G D+ + T+ +R + + + + S + L+ Sbjct: 16 RQVSAHTLDGYRRDLLKILALAEKAGLSDWNALDTRSLRTFVARLHQQGQSSRSLARLLS 75 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRL 194 + R L+++ +R+ +P + PK + R + Q E + + Sbjct: 76 ATRGLYQYLLREGRCRHDPANGLSAPKSPRKLPRTLDADRALQLLDGAVEDDFIARRDQA 135 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT-VELPDGFMKLLAM------ 247 E SGLR S+ ++ L ++ + G + + + + L Sbjct: 136 LLELFYSSGLRLSELVGLDLEWLDLKEGLVRVRGKGNKVRELPVGKAARQALEAWLPLRA 195 Query: 248 -TPIGKETFFINNDKQKMNATQFSIWFKAK-ATKAGVNKSAHGVRKFSATISADAGATAH 305 FI +++ + + + G + H +R A+ ++ Sbjct: 196 QAAPEDGAVFIGRGGKRLTPRAIQLRVRQAGVRELGQHLHPHMLRHSFASHLLESSGDLR 255 Query: 306 ELMATYGWKTVDQAETYT-----KGADRIRLGIKNSRRISSVVDSDDP 348 + G + + YT A ++R + +DP Sbjct: 256 AVQELLGHADIATTQIYTHLDFQHLASVYDRAHPRAKRKGNADGGNDP 303 >gi|50122313|ref|YP_051480.1| site-specific tyrosine recombinase XerC [Pectobacterium atrosepticum SCRI1043] gi|49612839|emb|CAG76289.1| probable integrase/recombinase protein [Pectobacterium atrosepticum SCRI1043] Length = 340 Score = 109 bits (273), Expect = 5e-22, Method: Composition-based stats. Identities = 46/308 (14%), Positives = 100/308 (32%), Gaps = 32/308 (10%) Query: 51 LTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI---IRKSG 107 +T P TL+ + Y + + + + + G Sbjct: 1 MTKPKPPSPEALYLSSLSQTLRQYTTAYLAHLTATNHSPRTVEGYGERLRPFVTWCEERG 60 Query: 108 DFDYRKITTK---------HIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPC 158 +++ H + + + LTS+R+LF+W +++ ++ NP Sbjct: 61 LTQAAQVSLAVLEAYQRHLHGYRKADGKPLAQGGQLNRLTSIRMLFRWLLQRHHILYNPA 120 Query: 159 LSVERPKRKTEGI-RPWTKEDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAG 213 + PK + + ++E+ + G + R E L +GLR S+ Sbjct: 121 EQMTLPKAEKRLPAQILSEEETEAVMDAQDTETLTGLRNRAVLEMLWSTGLRRSELAGLM 180 Query: 214 VQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAM----------TPIGKETFFINNDK 261 + + + ++ K V + + + T F+ Sbjct: 181 LDDVDVGRGVLVVRQGKGNKDRVVPVGLRALVWVQRYLDAVRPRLTTKHDSGALFVTIWG 240 Query: 262 QKMNATQFSIWF-KAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQ 318 + + +I A +A + K+ H R AT + GA + A G + ++ Sbjct: 241 KTLGRATLTILAGSAIREQAHLKKAGACHVFRHSMATQMLENGADTRYIQAILGHEKLET 300 Query: 319 AETYTKGA 326 + YT+ A Sbjct: 301 TQIYTRVA 308 >gi|160947529|ref|ZP_02094696.1| hypothetical protein PEPMIC_01463 [Parvimonas micra ATCC 33270] gi|158446663|gb|EDP23658.1| hypothetical protein PEPMIC_01463 [Parvimonas micra ATCC 33270] Length = 324 Score = 109 bits (273), Expect = 5e-22, Method: Composition-based stats. Identities = 38/210 (18%), Positives = 83/210 (39%), Gaps = 18/210 (8%) Query: 135 QFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----- 188 + +++++ FK+ E + NP +E PK + T + ++ + E Sbjct: 99 RKISAIKSWFKYLHNTVELINKNPAEKLELPKLQKRNPVYLTLSESEKVINSIKEEKNEF 158 Query: 189 -GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD----GFMK 243 ++ L GLR S+ ++ ++++ S+ + I V L + Sbjct: 159 NRTRDLCIILIFLTCGLRISELTGINIESIKDDKLSVIGKGNKERI-VFLNENCIYAIKS 217 Query: 244 LLAMTPIGKET--FFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISA 298 L + P K T F+++ K++++ + K AG++ + H +R +AT+ Sbjct: 218 YLQLRPCTKNTTALFLSSHKKRISNRSIQLRLKKYILLAGLDPKIYTPHKLRHTAATLMY 277 Query: 299 DAG-ATAHELMATYGWKTVDQAETYTKGAD 327 G + + G +V + YT D Sbjct: 278 KYGDVDIRTIQSILGHTSVATTQIYTHLDD 307 >gi|225850417|ref|YP_002730651.1| phage integrase family protein [Persephonella marina EX-H1] gi|225645629|gb|ACO03815.1| phage integrase family protein [Persephonella marina EX-H1] Length = 292 Score = 109 bits (273), Expect = 5e-22, Method: Composition-based stats. Identities = 48/299 (16%), Positives = 101/299 (33%), Gaps = 42/299 (14%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH---IRSGVESRKHTPS 131 E S + + ++ + Q ++ GD D +IT R +++ + S Sbjct: 6 CVELYLSYI-SDRSAYTVRNYRTDLKQFVQSVGDKDITEITKADIAKFRMFLQANRRKSS 64 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191 + + L S+ F++ + E ++ +P RPK + + E++Q+ E Sbjct: 65 TIARKLASVNSFFEYLIDLELISSSPVSKSHRPKVSQKIPSSLSNEEIQKVLKSC-ENLL 123 Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHL---QNNI-------------------FSIKTQKT 229 + +L +G+R S+ + ++ IK K Sbjct: 124 EKTVIVLMLTTGIRSSELLSIRRSDILIEKDGRTFAPDTILENYTDGSEVAYIKIK-GKG 182 Query: 230 GTIITVEL----PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS 285 G V + + ++ L E F + +++G+ Sbjct: 183 GKERVVPVSGKPLNILLQYLD--KNRDERLF------PFSYHTLRRLISNIGSRSGIPLH 234 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344 H +R +ATI+ +GA + G + Y K +K +R +S +D Sbjct: 235 PHKLRHTAATIALKSGAELRVIQELLGHASPLTTARYAKVGHEQL--VKATRTLSESID 291 >gi|242280181|ref|YP_002992310.1| integrase family protein [Desulfovibrio salexigens DSM 2638] gi|242123075|gb|ACS80771.1| integrase family protein [Desulfovibrio salexigens DSM 2638] Length = 319 Score = 109 bits (273), Expect = 5e-22, Method: Composition-based stats. Identities = 43/261 (16%), Positives = 93/261 (35%), Gaps = 24/261 (9%) Query: 88 AVNSRISFESYFDQIIRKSGDFD-----YRKITTKHIRSGVES---RKHTPSSAIQFLTS 139 + + S+ Q KIT+ +R+ + ++ S+ + L+S Sbjct: 29 SAATLRSYAKDISQFEEFLETRKKTLAVPEKITSDLVRAFLAKLHGQRLAKSTMSRKLSS 88 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQFKSFWSEGSQPRLA 195 +R FK+ + ++ +P + + PK++ R + M + Sbjct: 89 LRSFFKYMTKHRFIQNDPMVGIRNPKQEIRHPRSLNVDQAVNLMDAHVGDEPADKRDLAL 148 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-ELPDGFMKLLA-------- 246 E L SGLR S++ + + + ++ G + L D K + Sbjct: 149 AEMLYGSGLRVSEAITLDLFDIDTSSGVVRVSGKGNKERLSPLSDAACKAVNDYLAVRAE 208 Query: 247 -MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGAT 303 + ++ F+ N ++N Q + A AG+++ H +R A+ +GA Sbjct: 209 LGPALEEQALFVGNRGGRINRRQVNRILARMAEGAGLHEGVHPHMLRHSFASHMLQSGAD 268 Query: 304 AHELMATYGWKTVDQAETYTK 324 + G + + + YT Sbjct: 269 MRSVQELLGHEHLSTTQRYTH 289 >gi|325063103|gb|ADY66793.1| tyrosine recombinase xerD [Agrobacterium sp. H13-3] Length = 331 Score = 109 bits (273), Expect = 5e-22, Method: Composition-based stats. Identities = 45/307 (14%), Positives = 99/307 (32%), Gaps = 52/307 (16%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTK-----HIRSGVESRKHTPSSAIQFLTS 139 A N+ S+E + G + + + ++ +S + L+S Sbjct: 25 RGAAANTLSSYERDLSDLREFLGGRGQSLMEAATADLSAYLTHLSTQGFAATSQARRLSS 84 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS--------- 190 MR +++ + +P +++ PK+ + + D+ + +E + Sbjct: 85 MRQFYRFLYSEGLRGDDPTGTIDAPKKGLTLPKTMSVADVTKLLGIAAEEAALTGPGQLA 144 Query: 191 --QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLLAM 247 + L E L +G+R S+ V+ L+ F + K V L ++ + Sbjct: 145 RIRMHLLLELLYATGMRVSELVSLPVKVLRQEGRFLMIRGKGNKDRMVLLSRAAIEAMEK 204 Query: 248 TPIGKETFFINNDKQKMNATQ-----------------------FSIWFKAKATKAGVN- 283 +++ + + + F+ K A +AG+N Sbjct: 205 YDAARKSLVPEKSRTPASPKKADSPESPWLFPSNSKEGHLPRQVFARDLKDIAIRAGLNP 264 Query: 284 --KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341 S H +R A+ GA + G + + YT + R+ Sbjct: 265 SAVSPHVLRHAFASHLLQNGADLRAVQELLGHSDISTTQIYTHVLE---------ERLQE 315 Query: 342 VVDSDDP 348 +V + P Sbjct: 316 LVQTHHP 322 >gi|329963640|ref|ZP_08301114.1| site-specific recombinase, phage integrase family [Bacteroides fluxus YIT 12057] gi|328528050|gb|EGF55031.1| site-specific recombinase, phage integrase family [Bacteroides fluxus YIT 12057] Length = 379 Score = 109 bits (273), Expect = 5e-22, Method: Composition-based stats. Identities = 48/224 (21%), Positives = 87/224 (38%), Gaps = 14/224 (6%) Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINP---CLSVERPKRKTEGIRPWTKEDMQ 180 E +K ++ + + +R AV +EY+A NP S E+PKR+ T ++++ Sbjct: 154 EEKKLHANTQLHYFKMLRYCLNHAVSEEYIACNPIDKMKSDEKPKRRKADREYLTIDELR 213 Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-----NNIFSIKTQKTGTIITV 235 S + AF F + GLR D + + N +I QKT I++ Sbjct: 214 YLVRTPFYNSLLKKAFLFSCFCGLRHCDIVALEWKDIHYDTNGNASINIVQQKTHEAISL 273 Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI-WFKAKATKAGV--NKSAHGVRKF 292 L +K L ++T + + + + S A +AG+ + + H R Sbjct: 274 PLSPEAVKYLPNREKAQDT---DKIFKGLISLGRSNEILDRWAKQAGILKHVTFHVARHT 330 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336 AT+ GA + + G + + Y K D ++ Sbjct: 331 HATMMLTLGADLYTISKLLGHTNIQTTQIYAKLVDESKMKAIAL 374 >gi|146297662|ref|YP_001181433.1| phage integrase family protein [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145411238|gb|ABP68242.1| phage integrase family protein [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 332 Score = 109 bits (273), Expect = 5e-22, Method: Composition-based stats. Identities = 42/279 (15%), Positives = 89/279 (31%), Gaps = 25/279 (8%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129 T K + + ++ ++ +++ + +R G+ K+ I++ + T Sbjct: 37 TFKEFVDYWFEAYASTAVKPSTQKRYRQLLKPALRAIGNKPLNKVKPLDIQNIYIALAGT 96 Query: 130 PSS--AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 S+ ++ + +FK A EY++ NP V P + + W E ++F Sbjct: 97 QSNCTILKLHRLLHEIFKHAQMWEYISDNPVKKVVPPTPEKKVFDVWDVETAKRFLEIIK 156 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ---------------NNIFSIKTQKTGTI 232 + A L++G+R + + + ++ + + Sbjct: 157 DEPIYYPAL-IALHTGMRAGEILSLKWCDVNFETRVISIVKSERKNRGLKTVNLKTKTSK 215 Query: 233 ITVELPDGFMKLLA-----MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SA 286 V + D K L P + + S FK K Sbjct: 216 RAVYMNDILYKELKNLYEITKPKPDDFVCPRLPTGNLTVNYLSRKFKKLVKKHNFPLIRF 275 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTK 324 H +R AT+ G + G + A+TY+ Sbjct: 276 HDLRHTFATLMLSLGVNTKIVAEILGHSDIKLTADTYSH 314 >gi|114049118|ref|YP_739668.1| tyrosine recombinase XerC [Shewanella sp. MR-7] gi|123131002|sp|Q0HQJ4|XERC_SHESR RecName: Full=Tyrosine recombinase xerC gi|113890560|gb|ABI44611.1| tyrosine recombinase XerC [Shewanella sp. MR-7] Length = 299 Score = 109 bits (273), Expect = 5e-22, Method: Composition-based stats. Identities = 30/265 (11%), Positives = 88/265 (33%), Gaps = 19/265 (7%) Query: 76 SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD-FDYRKITTKHIR---SGVESRKHTPS 131 Y +S L+ ++ ++ + + D + +H + + + + +P Sbjct: 13 ETYMQSER--QLSAHTVRNYMYELQRGSELLPEGVDLLNVGREHWQQVLAKLHRKGLSPR 70 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR---PWTKEDMQQFKSFWSE 188 S +L++++ ++ +R + +NP + PK+ + + + + Sbjct: 71 SLSLWLSAIKQWGEFLLRSGVIELNPAKGLSAPKQAKPLPKNIDVDSISHLLAIEGNDPL 130 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAM 247 + + E SGLR ++ + +Q + ++ K V + ++ ++ Sbjct: 131 TLRDKAIMELFYSSGLRLAELAALDLSSVQYDQHEVRVLGKGNKERIVPVGRYAIEAISA 190 Query: 248 T-------PIGKETFFINNDKQKMNATQFSIWFKAK--ATKAGVNKSAHGVRKFSATISA 298 F+ ++++ + H +R AT Sbjct: 191 WLKCRKQISCEDNALFVTEKGKRLSHRSIQARMSKWGQEQALSMRVHPHKLRHSFATHML 250 Query: 299 DAGATAHELMATYGWKTVDQAETYT 323 ++ A + G + + + YT Sbjct: 251 ESSADLRAVQELLGHENLSTTQIYT 275 >gi|206599577|ref|YP_002242016.1| gp33 [Mycobacterium phage Brujita] gi|206282726|gb|ACI06247.1| gp33 [Mycobacterium phage Brujita] gi|302858513|gb|ADL71260.1| gp33 [Mycobacterium phage island3] Length = 297 Score = 109 bits (273), Expect = 5e-22, Method: Composition-based stats. Identities = 48/268 (17%), Positives = 97/268 (36%), Gaps = 5/268 (1%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133 +++ +R SL+ + + ++ G + + E + + Sbjct: 1 MVNRWRTWQFAQSLSARTVEERVATVRRMAAWCGVEPEFAQVEQIVSWLAEGGNWSARTR 60 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193 + ++ F W +Q + NP + + RPKR RP + D+Q+ + + + Sbjct: 61 WTYYGALSAWFLWLQQQGHRHDNPMVMIGRPKRPKSVPRPVSNLDVQRLLAV-RAHKRTK 119 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGK 252 + GLR + + +HL T K T+ L +++ P + Sbjct: 120 AMILLAAFQGLRVHEIAQIKGEHLDLIERTMTVTGKGNVTATLPLHHRVVEIAYQMPR-R 178 Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYG 312 +F D+ S K +AGV SAH +R + T +AG + Sbjct: 179 GHWFPGPDRGHQRRESVSGTIKEAMIRAGVVGSAHCLRHWFGTALLEAGVDLRTVQELMR 238 Query: 313 WKTVDQAETYTKGADRIRLGIKNSRRIS 340 +++ E YT+ D+ R + R+ Sbjct: 239 HQSLTSTEIYTRVTDQRR--AEGIERLD 264 >gi|302332858|gb|ADL23051.1| site-specific recombinase XerC [Staphylococcus aureus subsp. aureus JKD6159] Length = 298 Score = 109 bits (273), Expect = 5e-22, Method: Composition-based stats. Identities = 37/266 (13%), Positives = 93/266 (34%), Gaps = 22/266 (8%) Query: 85 GSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGVE---SRKHTPSSAIQFLTS 139 + + ++ S++ Q + + + R+ + S +S + +++ Sbjct: 16 RNFSEHTLKSYQDDLIQFNQFLEQEHLQLNTFEYRDARNYLSYLYSNHLKRTSVSRKIST 75 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLA 195 +R +++ + + INP + + PK++ + + +E+M+ E + + R+ Sbjct: 76 LRTFYEYWMTLDENIINPFVQLVHPKKEKYLPQFFYEEEMEALFKTVEEDTSKSLRDRVI 135 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVE--------LPDGFMKLL 245 E L +G+R S+ Q + N ++ K V + + Sbjct: 136 LELLYATGIRVSELVNIKKQDIDFYANGVTV-LGKGSKERFVPFGAYCRQSIENYLEHFK 194 Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATK-AGV-NKSAHGVRKFSATISADAGAT 303 + + +N + + + AGV H +R AT + GA Sbjct: 195 PIQSCKHDFLIVNMKGEAITERGVRYVLNDIVKRTAGVSEIHPHKLRHTFATHLLNQGAD 254 Query: 304 AHELMATYGWKTVDQAETYTKGADRI 329 + + G + YT +++ Sbjct: 255 LRTVQSLLGHVNLSTTGKYTHVSNQQ 280 >gi|260101613|ref|ZP_05751850.1| integrase/recombinase XerC [Lactobacillus helveticus DSM 20075] gi|260084576|gb|EEW68696.1| integrase/recombinase XerC [Lactobacillus helveticus DSM 20075] Length = 302 Score = 109 bits (273), Expect = 5e-22, Method: Composition-based stats. Identities = 36/237 (15%), Positives = 86/237 (36%), Gaps = 21/237 (8%) Query: 107 GDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166 G + ++ + + RK SS + ++S+ F++ R++++ I+P + + Sbjct: 48 GWKNVQERDIQIYLQNLADRKLVRSSQARQMSSLHSFFRFLTRRKFIKIDPTQGITLRRG 107 Query: 167 KTEGIRPWTKEDMQQFKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222 + + + +++Q + FE +G+R S+ ++ + N+ Sbjct: 108 EKKLPEFFFGNELKQVFDSLKGNKPLTMRNLALFELFYATGMRVSEVSNLTLRQIDLNLQ 167 Query: 223 SIKTQKTGTI-------------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF 269 +I G + L D LL ++ F++N ++ Sbjct: 168 TILVHGKGNKDRYVAFDDHTKKSLVRYLEDARPNLLKDET--EQHVFLSNLGNPLSKRGI 225 Query: 270 SIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 + +AG++ H +R AT + GA + G ++ + YT Sbjct: 226 EYVMQKTFNQAGISGKVHPHELRHTFATAMLNNGADLRSVQELLGHSSLSATQIYTH 282 >gi|89898086|ref|YP_515196.1| site-specific tyrosine recombinase XerD [Chlamydophila felis Fe/C-56] gi|89331458|dbj|BAE81051.1| integrase/recombinase [Chlamydophila felis Fe/C-56] Length = 298 Score = 109 bits (273), Expect = 5e-22, Method: Composition-based stats. Identities = 41/267 (15%), Positives = 87/267 (32%), Gaps = 29/267 (10%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR---SGVESRKHTPSSAIQFLTSMR 141 L+ NS ++ ++ S +I+ + + R+ + S+ + L +++ Sbjct: 22 RGLSRNSISAYSQDITLFLKISAITSIEEISQDSVYLFVQQLHKRQESESTLARRLIALK 81 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS-------EGSQPRL 194 V F++ E + P +E PK T +++ + ++ Sbjct: 82 VFFRFLKETELLDHPP--LIEHPKIWKRLPSVLTPKEVDALLAIPKTSETSPMISARDSA 139 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM------- 247 L +G+R S+ C + + ++ + T K V L + K + Sbjct: 140 ILHTLYSTGIRVSELCGLCIGDVSDDFLRV-TGKGSKTRLVPLGERACKTIDAYLCPFRE 198 Query: 248 ----TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKFSATISADA 300 + F++ K+ + A + + S H +R AT D Sbjct: 199 TFQKQRPEEHHLFLSVRGHKLERSCVWRRIHHYAKQ--ITHKQVSPHSLRHAFATHLLDN 256 Query: 301 GATAHELMATYGWKTVDQAETYTKGAD 327 A + G + E YT A Sbjct: 257 KADLRVIQEMLGHARIASTEIYTHVAS 283 >gi|150009561|ref|YP_001304304.1| site-specific recombinase [Parabacteroides distasonis ATCC 8503] gi|149937985|gb|ABR44682.1| site-specific recombinase [Parabacteroides distasonis ATCC 8503] Length = 387 Score = 109 bits (273), Expect = 5e-22, Method: Composition-based stats. Identities = 48/295 (16%), Positives = 108/295 (36%), Gaps = 32/295 (10%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIR------KSGDFD----------YRKITTK 117 L+ +Y +S +++ + S + R + G D + Sbjct: 96 LLRDYIRSFAETK-GKSTQQNLNSLVYHLERSKGTDIQIGKVDKYYIMDFIEYLEDAQIE 154 Query: 118 HIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP---- 173 H + + S A+ F ++++ AV + + +NP LS+++ R + P Sbjct: 155 HTQRNKGRKLSKNSQAMYF-KCLKMVLDEAVSDDIIPLNPILSIKKKYRPSAEKAPKREF 213 Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-----NNIFSIKTQK 228 T++++++F + AF +GLR D + ++ S+ +K Sbjct: 214 LTEDELRRFAGTDHPNELLKRAFMIGCLTGLRHCDIKQMKWSNIGVVKNGIECISLVQEK 273 Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SA 286 T + + L + K L + + + + + A KAG+NK + Sbjct: 274 TNDPVDIPLNENIRKWLPEQGNASMEDLVFSGLITLGRS--NEILPKWAEKAGINKHLTF 331 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR-IRLGIKNSRRIS 340 H R A ++ + + G +++ E YT+ D + ++ +I+ Sbjct: 332 HCSRHTFAVLAIAKKVDIYTVSKLLGHQSITVTEIYTEVLDNSKKEAMEAIGKIN 386 >gi|209521419|ref|ZP_03270129.1| tyrosine recombinase XerC [Burkholderia sp. H160] gi|209498137|gb|EDZ98282.1| tyrosine recombinase XerC [Burkholderia sp. H160] Length = 307 Score = 109 bits (273), Expect = 6e-22, Method: Composition-based stats. Identities = 46/288 (15%), Positives = 91/288 (31%), Gaps = 31/288 (10%) Query: 75 ISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTP 130 I+ Y H L+ ++ + +++ + + +T IR V T Sbjct: 7 IAAYLSHLEHERRLSAHTLRGYTHELEELKQLAKGRPLESLTAVDIRGAVARAHAGGLTA 66 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF----KSFW 186 S L++ R ++W + + NP +V PK+ + + +D + + Sbjct: 67 RSIGHRLSAWRAFYRWLAGRVELPANPVAAVRAPKQAKTLPKALSVDDAARLMDNPAADS 126 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQ------HLQNNIFSIKT------QKTGTIIT 234 EG + E SGLR ++ V+ H + K Sbjct: 127 PEGLRDHAMLELFYSSGLRLAELVGLDVRFADIDGHRSAGWLKLDAAEVEVLGKGNRRRV 186 Query: 235 VELPDGFMKLLAMTPIGKE--------TFFINNDKQKMNATQFSIWFKAKATKAGVNK-- 284 V + + L ++ F++ +++ K A AG+ Sbjct: 187 VPVGSKAVAALNAWLGVRDQMVRHDPHPLFLSTRGNRLSPNVVRERVKRAALAAGIPANV 246 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 H +R AT + + G ++ + YT G D L Sbjct: 247 HPHVLRHSFATHVLQSSGDLRAVQELLGHASITATQVYT-GLDFQHLA 293 >gi|33152918|ref|NP_874271.1| site-specific tyrosine recombinase XerC [Haemophilus ducreyi 35000HP] gi|71153410|sp|Q7VKG8|XERC_HAEDU RecName: Full=Tyrosine recombinase xerC gi|33149143|gb|AAP96660.1| integrase/recombinase XerC [Haemophilus ducreyi 35000HP] Length = 304 Score = 109 bits (273), Expect = 6e-22, Method: Composition-based stats. Identities = 38/259 (14%), Positives = 84/259 (32%), Gaps = 19/259 (7%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDF---DYRKITTKHIRSGV---ESRKHTPSSAIQFLT 138 ++ ++ +++ I D++ + +R + + S L Sbjct: 23 KQVSPHTLTNYQRQLLAISEMLIAAQIDDWQAVDASVVRWILTQSHKQGLGAKSIGLRLV 82 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQPRLA 195 +R F + V++ YV +NP + ++ PK + E M Q + Sbjct: 83 VLRQWFAYLVQRHYVKVNPAVGIKAPKVARHLPKNIDAERMGQLLDVEVDEPADIRDLAM 142 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVEL----PDGFMKLLAMTP- 249 E + SGLR ++ R + + ++ K V + L + P Sbjct: 143 MELMYSSGLRLAELQRLDLGDMDLIDAEVRLLGKGNKERIVPIGSRALTALQAWLTVRPS 202 Query: 250 --IGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAH 305 F+N +++ + + + G+ H +R AT +A Sbjct: 203 FNPQDNALFLNKRGGRLSHRSIQLAMQKWGERQGLATRLHPHKLRHSFATHLLEASTDLR 262 Query: 306 ELMATYGWKTVDQAETYTK 324 + G ++ + YT Sbjct: 263 AVQELLGHSSLSTTQIYTH 281 >gi|15677703|ref|NP_274864.1| integrase/recombinase XerC [Neisseria meningitidis MC58] gi|34223071|sp|Q9JXV6|XERC_NEIMB RecName: Full=Tyrosine recombinase xerC gi|7227126|gb|AAF42202.1| integrase/recombinase XerC [Neisseria meningitidis MC58] gi|325139527|gb|EGC62067.1| tyrosine recombinase XerC [Neisseria meningitidis CU385] gi|325200925|gb|ADY96380.1| tyrosine recombinase XerC [Neisseria meningitidis H44/76] Length = 301 Score = 109 bits (273), Expect = 6e-22, Method: Composition-based stats. Identities = 38/274 (13%), Positives = 84/274 (30%), Gaps = 20/274 (7%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKI---TTKHIRSGVES-- 125 L + Y ++ + ++ ++ +++ + T + Sbjct: 6 LAAYLDAYLENIVREGKSEHTVAAYRRDLQELLALLEEMPSANPSNCTRGDFVQALRRLS 65 Query: 126 -RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 R + + L+S R W V++ + +P ++ PK+ + +E + + Sbjct: 66 GRGLGERTLARKLSSWRQYCVWLVKRGLMHADPTADIKPPKQPERVPKALPQEWLNRMLD 125 Query: 185 F-----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELP 238 + FE + SGLR S+ + + + G V L Sbjct: 126 LPVDGGDPLAVRDHALFELMYGSGLRVSEIHGLNADDVYLDEAWVHVIGKGRKQRQVPLV 185 Query: 239 ----DGFMKLL--AMTPIGKETFFINNDKQKMNATQFSIWFKAKATK--AGVNKSAHGVR 290 + L T + F + +++ Q A + G + S H +R Sbjct: 186 GKSVEALKNYLPLRQTASDGKALFTGRNGTRLSQRQIQKRLAQWAAQNGDGRHVSPHMMR 245 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK 324 A A + G ++ + YTK Sbjct: 246 HSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTK 279 >gi|15600473|ref|NP_253967.1| site-specific tyrosine recombinase XerC [Pseudomonas aeruginosa PAO1] gi|254238023|ref|ZP_04931346.1| site-specific recombinase Sss [Pseudomonas aeruginosa C3719] gi|34222782|sp|Q51566|XERC_PSEAE RecName: Full=Tyrosine recombinase xerC gi|9951593|gb|AAG08665.1|AE004940_9 site-specific recombinase Sss [Pseudomonas aeruginosa PAO1] gi|126169954|gb|EAZ55465.1| site-specific recombinase Sss [Pseudomonas aeruginosa C3719] Length = 303 Score = 109 bits (273), Expect = 6e-22, Method: Composition-based stats. Identities = 39/288 (13%), Positives = 97/288 (33%), Gaps = 24/288 (8%) Query: 85 GSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIR---SGVESRKHTPSSAIQFLT 138 ++ ++ + +I+ K+G D+ + T+ +R + + + + S + L+ Sbjct: 16 RQVSAHTLDGYRRDLLKILALAEKAGLSDWNALDTRSLRTFVARLHQQGQSSRSLARLLS 75 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRL 194 + R L+++ +R+ +P + PK + R + Q E + + Sbjct: 76 ATRGLYQYLLREGRCRHDPANGLSAPKSPRKLPRTLDADRALQLLDGAVEDDFIARRDQA 135 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT-VELPDGFMKLLAM------ 247 E SGLR S+ ++ L ++ + G + + + + L Sbjct: 136 LLELFYSSGLRLSELVGLDLEWLDLKEGLVRVRGKGNKVRELPVGKAARQALEAWLPLRT 195 Query: 248 -TPIGKETFFINNDKQKMNATQFSIWFKAK-ATKAGVNKSAHGVRKFSATISADAGATAH 305 FI +++ + + + G + H +R A+ ++ Sbjct: 196 QAAPEDGAVFIGRSGKRLTPRAIQLRVRQAGVRELGQHLHPHMLRHSFASHLLESSGDLR 255 Query: 306 ELMATYGWKTVDQAETYT-----KGADRIRLGIKNSRRISSVVDSDDP 348 + G + + YT A ++R + +DP Sbjct: 256 AVQELLGHADIATTQIYTHLDFQHLASVYDRAHPRAKRKGNADGGNDP 303 >gi|315125203|ref|YP_004067206.1| site-specific recombinase [Pseudoalteromonas sp. SM9913] gi|315013716|gb|ADT67054.1| site-specific recombinase [Pseudoalteromonas sp. SM9913] Length = 314 Score = 109 bits (273), Expect = 6e-22, Method: Composition-based stats. Identities = 49/297 (16%), Positives = 108/297 (36%), Gaps = 28/297 (9%) Query: 51 LTGSTPKREYINSPRKKPTTLKWLISEYRK-----SAHWGSLAVNSRISFESYFDQIIRK 105 ++ TP ++ + P T L S+Y K SAH + V+ YF+++ Sbjct: 1 MSDDTPNISDLSDSWRTPIT---LFSDYLKFERQYSAHTVNQYVSQLGFAALYFNKLCDN 57 Query: 106 SGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVA----INPCLSV 161 F + + + +++ + + L+ +R L+K+ + NP + Sbjct: 58 W--FAVQSEHIRRYSMALRAKQLSGRTISLKLSCIRSLYKFLKAKNITEQPHYHNPAQGI 115 Query: 162 ERPKRKTEGIRPWTKEDMQQFKSF---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ 218 + PK + + M + + + E + SGLR S+ A +Q + Sbjct: 116 KGPKFAKPLPKNLDVDQMARLLEIPDDDPLAIRDKAMMELMYSSGLRISELVGANMQDIN 175 Query: 219 NNIFSIKTQKTG-TIITVEL----PDGFMKLLAMTP----IGKETFFINNDKQKMNATQF 269 I + G + + + K LA+ P + F+++ K +++ Q Sbjct: 176 ARNGEILVRGKGAKERLIPVGSKALEALKKWLAVRPLFMGADEHAVFLSSKKNRISVRQV 235 Query: 270 SIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 + + K G++ H +R A+ ++ + G ++ + YT Sbjct: 236 RLRMQEWGIKQGISSQVHPHKLRHSFASHILESSGDLRAVQELLGHSSLSATQVYTH 292 >gi|42523751|ref|NP_969131.1| integrase/recombinase XerD [Bdellovibrio bacteriovorus HD100] gi|39575958|emb|CAE80124.1| integrase/recombinase XerD [Bdellovibrio bacteriovorus HD100] Length = 292 Score = 109 bits (273), Expect = 6e-22, Method: Composition-based stats. Identities = 42/258 (16%), Positives = 85/258 (32%), Gaps = 26/258 (10%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLF 144 + N+ +++ + + + T ++ K + S + ++S+R F Sbjct: 17 RGRSQNTVMAYRRDLELYLE----YRKTGKTVPGFYEFMKKNKLSTRSQARVISSLRTYF 72 Query: 145 KWAVRQEYVAINP-CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG-----SQPRLAFEF 198 K+ + P + PK K + T ++ QQ ++ +L F Sbjct: 73 KFCETRGMKC--PELRELRPPKVKVGLPKVLTPQEFQQLFDAAEVPDAVKTARNQLTLLF 130 Query: 199 LLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLL---------AM 247 L G R S+ V + + K V L + + L A+ Sbjct: 131 LYGLGCRVSELIGLNVVDFNQTDRWIKV-LGKGNKERLVPLTEKLAENLTVYLKEHRMAL 189 Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAH 305 + IN+ + + W A + +AG + H R AT ++GA Sbjct: 190 VKENSPSILINDRGHRPSRVDVWRWLAAWSARAGFAEPVNPHRFRHGCATALLESGADLR 249 Query: 306 ELMATYGWKTVDQAETYT 323 + G ++ + YT Sbjct: 250 SIQMLLGHASIQTTQIYT 267 >gi|88705495|ref|ZP_01103205.1| site-specific recombinase [Congregibacter litoralis KT71] gi|88700008|gb|EAQ97117.1| site-specific recombinase [Congregibacter litoralis KT71] Length = 312 Score = 109 bits (273), Expect = 6e-22, Method: Composition-based stats. Identities = 38/269 (14%), Positives = 93/269 (34%), Gaps = 23/269 (8%) Query: 77 EYRKSAHWGSLAVNSRISFESYF---DQIIRKSGDFDYRKITTKHIRSGV---ESRKHTP 130 EY +S L+ ++ +++ D ++ H+R + R P Sbjct: 20 EYLRSVR--RLSPHTVAAYQRDLGSFRAFCDAQSLQDCDEVQESHVRQWLAQGHRRSLAP 77 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK---SFWS 187 +S + L+++R F+W NP L+V+ P+++ + + + + + Sbjct: 78 NSLQRQLSALRAYFEWESSDTGRRRNPALAVQAPRKRRKLPGTLEADQVGVYLRADAEDP 137 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII-TVELPDGFMKLLA 246 + E SGLR + + + I G+ TV + + + Sbjct: 138 LQLRDLAMAELFYSSGLRLGELRAVNLYDIDRGQSLISVTGKGSKTRTVPVGSAAIAAID 197 Query: 247 M---------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSAT 295 + +E F+++ ++++ + A + G+ + H +R A+ Sbjct: 198 AYLPHRPAAVSDDDQEALFLSSRGRRISERSIQSRVQLLAERNGLGRDVHPHMLRHSFAS 257 Query: 296 ISADAGATAHELMATYGWKTVDQAETYTK 324 ++ + G + + YT Sbjct: 258 HLLESSGDLRAVQELLGHSDISTTQIYTH 286 >gi|256965045|ref|ZP_05569216.1| phage integrase [Enterococcus faecalis HIP11704] gi|307273143|ref|ZP_07554389.1| tyrosine recombinase XerC [Enterococcus faecalis TX0855] gi|256955541|gb|EEU72173.1| phage integrase [Enterococcus faecalis HIP11704] gi|306510128|gb|EFM79152.1| tyrosine recombinase XerC [Enterococcus faecalis TX0855] Length = 299 Score = 109 bits (273), Expect = 6e-22, Method: Composition-based stats. Identities = 39/267 (14%), Positives = 96/267 (35%), Gaps = 29/267 (10%) Query: 85 GSLAVNSRISFE---SYFDQIIRKSGDFDY---RKITTKHIRSGVESRKHTPSSAIQFLT 138 + ++ +++ +F ++ SG+ +Y + + S + ++++ +S + + Sbjct: 18 RGYSEKTKKAYQEDIQHFFSFLKTSGNDNYLTVEHLDVRAYLSELYDQEYSRNSISRKIA 77 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRL 194 S+R +++ ++ E + NP V K++ R + +++M + + Sbjct: 78 SLRSFYQFLLKNEAIQENPFSYVHMKKKELRLPRFFYEKEMDALFESAQGEQPLDLRNQA 137 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-ITVE------------LPDGF 241 E L +G+R S+ V + + G V L +G Sbjct: 138 LLEVLYGTGIRVSECANLTVDAVDFQASVLLVHGKGNKDRYVPFGSFAQDALKDYLENGR 197 Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQ----FSIWFKAKATKAGVNKSAHGVRKFSATIS 297 L+ F+N+ +++ T + K + A ++ H +R AT Sbjct: 198 ALLMTKYQKKHPYVFVNHHGEQITPTGIEYVLNQLIKKSSLNAEIH--PHMLRHTFATHL 255 Query: 298 ADAGATAHELMATYGWKTVDQAETYTK 324 + GA + G + + Y Sbjct: 256 LNNGADMRTVQELLGHANLSTTQIYAH 282 >gi|294783592|ref|ZP_06748916.1| phage integrase family site-specific recombinase [Fusobacterium sp. 1_1_41FAA] gi|294480470|gb|EFG28247.1| phage integrase family site-specific recombinase [Fusobacterium sp. 1_1_41FAA] Length = 371 Score = 109 bits (273), Expect = 6e-22, Method: Composition-based stats. Identities = 48/295 (16%), Positives = 103/295 (34%), Gaps = 33/295 (11%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFE--SYFDQIIRKSGDFDYRKITTKHIRSGVESRK 127 T L ++ + ++ N+ +E + + +IT ++ + Sbjct: 72 TFGDLFKQWIFNHKKVEVSDNTFGEYETAYRLRILPYNISNKRVNQITLNDLQMYFNELQ 131 Query: 128 HTPSSAIQFLTS---MRVLFKWAVRQEYVAINPCLSVERPK-RKTEGIRPWTKEDMQQFK 183 S+ + + FK+A+ Q + NPCL V K +K E ++K++ + Sbjct: 132 EKFST-NTIKKAYIQIHSCFKFAIIQGILNKNPCLGVTLQKEKKKEKYNVFSKQEQELIL 190 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ---------------- 227 + ++ F ++GLR + ++ I S++ Q Sbjct: 191 NTLNKKDIVDCLIYFTFFTGLRLGEVLALKWTDVKGKILSVERQYNRTVTIKDIGVSKLT 250 Query: 228 ------KTG-TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA 280 KT + + LPD + +L P E F +++ + + + A K Sbjct: 251 YEFKDLKTKNSKREIPLPDKALVILEGIPKTYELIF-SDEGKPIERKRPQRRITALCKKL 309 Query: 281 GV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIRLGI 333 + ++S H +R AT + + + G +D YT ++ I Sbjct: 310 NLEHRSFHSIRHSYATRLFELDVPIKTVQSLMGHSDMDTTMNIYTHVMQDKKMEI 364 >gi|294646923|ref|ZP_06724544.1| integron integrase [Bacteroides ovatus SD CC 2a] gi|294810786|ref|ZP_06769432.1| integron integrase [Bacteroides xylanisolvens SD CC 1b] gi|292637868|gb|EFF56265.1| integron integrase [Bacteroides ovatus SD CC 2a] gi|294441974|gb|EFG10795.1| integron integrase [Bacteroides xylanisolvens SD CC 1b] Length = 368 Score = 109 bits (273), Expect = 6e-22, Method: Composition-based stats. Identities = 39/297 (13%), Positives = 94/297 (31%), Gaps = 22/297 (7%) Query: 41 STFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD 100 F Y + + K+ TL Y + + ++ ++ +YF Sbjct: 62 PDFYDRYSPHAYIDYSRVYVRHPKPKREYTLP---KGYLELLEQKRYSPSTVKTYRAYFS 118 Query: 101 QIIRKSGDFDYRKITTKHIRSGV----ESRKHTPSSAIQFLTSMRVLFKWAV--RQEYVA 154 + + ++ I + +K + S + +++ ++ +++Y Sbjct: 119 DFMEYHEGRNIDRLKVPDINKYILYLVNEKKISVSQQNMRINAIKFYYEQVKGGKRQYYG 178 Query: 155 INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGV 214 + R K +K ++++ + S + + +GLR S+ Sbjct: 179 -----GITRAKEYKSLPEVLSKNEIKRILAQIS-NIKHHCMISLVYSAGLRRSELLNLTP 232 Query: 215 QHLQNNIFSIKTQKTGTI-----ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF 269 Q + + S++ G ++ +L + K F ++ +A+ Sbjct: 233 QDINSETMSVRIMGKGKKCRYSLLSPKLLEELRHYFREYRPQKWLFEGETPGEQYSASAL 292 Query: 270 SIWFKAKATKAGVNKSAHG--VRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 K A +AG+ H +R AT + G H + G + Y Sbjct: 293 VKVLKEAAHRAGIKHRVHVHMLRHSFATHLLEQGTDLHTIQELLGHNDIKTTTIYLH 349 >gi|256959059|ref|ZP_05563230.1| integrase [Enterococcus faecalis DS5] gi|257079090|ref|ZP_05573451.1| phage integrase [Enterococcus faecalis JH1] gi|294781639|ref|ZP_06746975.1| tyrosine recombinase XerC [Enterococcus faecalis PC1.1] gi|307270938|ref|ZP_07552221.1| tyrosine recombinase XerC [Enterococcus faecalis TX4248] gi|256949555|gb|EEU66187.1| integrase [Enterococcus faecalis DS5] gi|256987120|gb|EEU74422.1| phage integrase [Enterococcus faecalis JH1] gi|294451335|gb|EFG19801.1| tyrosine recombinase XerC [Enterococcus faecalis PC1.1] gi|306512436|gb|EFM81085.1| tyrosine recombinase XerC [Enterococcus faecalis TX4248] gi|315037059|gb|EFT48991.1| tyrosine recombinase XerC [Enterococcus faecalis TX0027] Length = 299 Score = 109 bits (273), Expect = 6e-22, Method: Composition-based stats. Identities = 38/267 (14%), Positives = 95/267 (35%), Gaps = 29/267 (10%) Query: 85 GSLAVNSRISFE---SYFDQIIRKSGDFDY---RKITTKHIRSGVESRKHTPSSAIQFLT 138 + ++ +++ +F ++ SG+ +Y + + S + ++++ +S + + Sbjct: 18 RGYSEKTKKAYQEDIQHFFSFLKTSGNDNYLTVEHLDVRAYLSELYDQEYSRNSISRKIA 77 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRL 194 S+R +++ ++ E + NP V K++ R + +++M + + Sbjct: 78 SLRSFYQFLLKNEAIQENPFSYVHMKKKQLRLPRFFYEKEMDALFESAQGEQPLDLRNQA 137 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-ITVE------------LPDGF 241 E L +G+R S+ V + + G V L + Sbjct: 138 LLEVLYGTGIRVSECANLTVDAVDFQASVLLVHGKGNKDRYVPFGSFAQDALKDYLENSR 197 Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQ----FSIWFKAKATKAGVNKSAHGVRKFSATIS 297 L+ F+N+ +++ T + K + A ++ H +R AT Sbjct: 198 ALLMTKYQKKHPYVFVNHHGEQITPTGIEYVLNQLIKKSSLNAEIH--PHMLRHTFATHL 255 Query: 298 ADAGATAHELMATYGWKTVDQAETYTK 324 + GA + G + + Y Sbjct: 256 LNNGADMRTVQELLGHANLSTTQIYAH 282 >gi|282916512|ref|ZP_06324270.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus D139] gi|283770316|ref|ZP_06343208.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus H19] gi|282318999|gb|EFB49351.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus D139] gi|283460463|gb|EFC07553.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus H19] Length = 298 Score = 109 bits (273), Expect = 6e-22, Method: Composition-based stats. Identities = 37/266 (13%), Positives = 93/266 (34%), Gaps = 22/266 (8%) Query: 85 GSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGVE---SRKHTPSSAIQFLTS 139 + + ++ S++ Q + + + R+ + S +S + +++ Sbjct: 16 RNFSEHTLKSYKDDLIQFNQFLEQEHLQLNTFEYRDARNYLSYLYSNHLKRTSVSRKIST 75 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLA 195 +R +++ + + INP + + PK++ + + +E+M+ E + + R+ Sbjct: 76 LRTFYEYWMTLDENIINPFVQLVHPKKEKYLPQFFYEEEMEALFKTVEEDTSKSLRDRVI 135 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVE--------LPDGFMKLL 245 E L +G+R S+ Q + N ++ K V + + Sbjct: 136 LELLYATGIRVSELVNIKKQDIDFYANGVTV-LGKGSKERFVPFGAYCRQSIENYLEHFK 194 Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATK-AGV-NKSAHGVRKFSATISADAGAT 303 + + +N + + + AGV H +R AT + GA Sbjct: 195 PIQSCNHDFLIVNMKGEAITERGVRYVLNDIVKRTAGVSEIHPHKLRHTFATHLLNQGAD 254 Query: 304 AHELMATYGWKTVDQAETYTKGADRI 329 + + G + YT +++ Sbjct: 255 LRTVQSLLGHVNLSTTGKYTHVSNQQ 280 >gi|323358629|ref|YP_004225025.1| site-specific recombinase XerD [Microbacterium testaceum StLB037] gi|323275000|dbj|BAJ75145.1| site-specific recombinase XerD [Microbacterium testaceum StLB037] Length = 309 Score = 109 bits (273), Expect = 6e-22, Method: Composition-based stats. Identities = 42/290 (14%), Positives = 85/290 (29%), Gaps = 37/290 (12%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFES----YFDQII----RKSGDFDYRKITTKHIRS 121 L+ + Y + L+ ++ ++ Y + + I Sbjct: 3 LERAVEGYLRHVALERGLSDHTVAAYRRDLAVYIEWLRGRGVDAIETVTPALIADFAAER 62 Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 SS + +S+R L ++ V + V +P + PK + T + + Sbjct: 63 ASAEPPPASSSLARLQSSVRGLHRFLVLEGRVDDDPSGRLRPPKAPRRLPKALTIGQVNE 122 Query: 182 FKSFW-------------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQH-LQNNIFSIKTQ 227 + R E L +G R S+ + V + ++ ++ Sbjct: 123 LLDAAGPAPGSSDASVAEPAAVRDRALLELLYATGARVSEIVQLDVDDTVHGDLLRVR-G 181 Query: 228 KTGTIITVEL-----------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAK 276 K V + LA F+ ++ + +A Sbjct: 182 KGDKERVVPVGSYARAAIEAYLTRVRPALAAKGRATPRLFLGVRGAPLSRQSAWLIIQAA 241 Query: 277 ATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 A +A + + S H +R AT GA + G +V + YT Sbjct: 242 AERASLTAHVSPHTLRHSFATHLLQGGADVRVVQELLGHASVATTQIYTH 291 >gi|90422054|ref|YP_530424.1| tyrosine recombinase XerD [Rhodopseudomonas palustris BisB18] gi|90104068|gb|ABD86105.1| tyrosine recombinase XerD subunit [Rhodopseudomonas palustris BisB18] Length = 320 Score = 109 bits (273), Expect = 6e-22, Method: Composition-based stats. Identities = 46/295 (15%), Positives = 92/295 (31%), Gaps = 39/295 (13%) Query: 74 LISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITT-----KHIRSGVESRK 127 LI + A N+ ++ + G + + + ++ R Sbjct: 11 LIELFLDMIAAEQGAGKNTLDAYRGDLTDLSDFLGHARSSFVAADTEVLRGYLAELDERG 70 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + +S + L++ R LF++ + + A +P + PKR + + D+ + Sbjct: 71 YKSTSVARKLSAFRHLFRFLLTERIRADDPAAILSGPKRGRGLPKVLSIADVDRLLQHAK 130 Query: 188 -------EGSQPRLA-------FEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTI 232 +Q RL E L +GLR S+ + + + + K Sbjct: 131 DLIAAPHANTQQRLRAARLYCLLEVLYATGLRVSELVSLPLSAARRDARMIVVRGKGNKE 190 Query: 233 ITVEL--------------PDGFMKLLAMTPIGKETFFIN-NDKQKMNATQFSIWFKAKA 277 V L D + A + F + + + F+ K A Sbjct: 191 RLVPLNESSKQAMAGYLAALDELRQEKAKNASASKWLFPSFGESGHLTRQHFARELKDLA 250 Query: 278 TKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 AG++ S H +R A+ GA + G + + YT + Sbjct: 251 GAAGLSPRLVSPHVLRHAFASHLLHNGADLRIVQTLLGHTDISTTQIYTHVVEER 305 >gi|167561111|ref|ZP_02354027.1| site-specific tyrosine recombinase XerC [Burkholderia oklahomensis EO147] Length = 306 Score = 109 bits (273), Expect = 6e-22, Method: Composition-based stats. Identities = 43/280 (15%), Positives = 91/280 (32%), Gaps = 32/280 (11%) Query: 75 ISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTP 130 I++Y + H L+ ++ ++ D++ + + +T +R V + Sbjct: 6 IADYLSNLRHVRKLSDHTLRAYAHELDELKKLANGRPLESLTAVDVRGAVARAHAGGLSA 65 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 S L++ R ++W + + NP ++ PKR + + +D + G+ Sbjct: 66 RSISHRLSAWRAFYRWFAQHVEMNANPVATIRAPKRAKMLPKALSVDDAAALMDAPASGT 125 Query: 191 ----QPRLAFEFLLYSGLRCSDSCRA-------------GVQHLQNNIFSIKTQKTGTII 233 + E SGLR ++ G L +++ K Sbjct: 126 AESLRDHAILELFYSSGLRLAELIGLDVAYVKIGEYRSEGWLDLAEAEVTVR-GKGDKER 184 Query: 234 TVELPDGFMKLLAMTPIGKETF--------FINNDKQKMNATQFSIWFKAKATKAGVNK- 284 V + + L + F F++ +M+ K A AG+ Sbjct: 185 KVPVGRKAIDALNAWLAVRGEFVRHDPHPLFLSVRGNRMSPGVVRGRVKRAALAAGIPAN 244 Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 H +R AT + + G ++ + YT Sbjct: 245 VHPHVLRHSFATHVLQSSGDLRAVQELLGHASISATQVYT 284 >gi|147677583|ref|YP_001211798.1| site-specific recombinase XerD [Pelotomaculum thermopropionicum SI] gi|189030080|sp|A5D2W6|XERC_PELTS RecName: Full=Tyrosine recombinase xerC gi|146273680|dbj|BAF59429.1| site-specific recombinase XerD [Pelotomaculum thermopropionicum SI] Length = 306 Score = 109 bits (273), Expect = 6e-22, Method: Composition-based stats. Identities = 45/272 (16%), Positives = 95/272 (34%), Gaps = 32/272 (11%) Query: 85 GSLAVNSRISFESYF----DQIIRKSGDFDYRKITT-------KHIRSGVESRKHTPSSA 133 + + + S++ D + G D+ + + +H + ++ + ++ Sbjct: 16 KNASPRTTESYQKDLFHGLDYFASRLGKEDHAIVPSDIDHRIFRHYLAHMQKQGLARATM 75 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQFKSFWSEG 189 + L + R +++ R++ + NP L V PK + R +++ ++ + G Sbjct: 76 ARRLAAWRSFYRYLYREKIIDGNPLLRVASPKLEKRLPRFLYEDEAKELVEAPDTKQPLG 135 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLAM- 247 + R E L GLR S+ + L + I+ T K V L ++ L Sbjct: 136 MRDRALLETLYAGGLRISELVLLDLGDLDISSGYIRVTGKRARERLVPLGSMAVEALQAY 195 Query: 248 -------------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKF 292 F+N ++++A K + + S H +R Sbjct: 196 LAKARPRLMANSVAKKINNALFLNCRGERLSARGIRKILDKYVEKVSLERKISPHTLRHS 255 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTK 324 AT +AGA + G + + YT Sbjct: 256 FATHLLNAGADLRSVQELMGHVRLSSTQVYTH 287 >gi|77461722|ref|YP_351229.1| site-specific tyrosine recombinase XerC [Pseudomonas fluorescens Pf0-1] gi|123602828|sp|Q3K4R6|XERC_PSEPF RecName: Full=Tyrosine recombinase xerC gi|77385725|gb|ABA77238.1| tyrosine recombinase [Pseudomonas fluorescens Pf0-1] Length = 299 Score = 109 bits (273), Expect = 6e-22, Method: Composition-based stats. Identities = 39/273 (14%), Positives = 94/273 (34%), Gaps = 22/273 (8%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQ-----IIRKSGDFDYRKITT-KHIRSGVE 124 L R ++ ++ ++ D+ I + G + I + + + + Sbjct: 5 LDAYCEHLRSE---RQVSPHTLSAYRRDLDKVLGWCIKQNIGSWQALDIQRLRSLIARLH 61 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW-TKEDMQQFK 183 ++ + S + L+++R L+ + R+ +P + PK + + T +Q + Sbjct: 62 AQGQSSRSLARLLSAVRGLYHYLNRECLCDHDPATGLAPPKGERRLPKTLDTDRALQLLE 121 Query: 184 SFWSEGSQPR---LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV----- 235 + R E SGLR S+ + L ++ G+ + Sbjct: 122 GAVEDDFLARRDQAILELFYSSGLRLSELTGLNLDQLDLADGMVQVLGKGSKTRLLPVGK 181 Query: 236 ---ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAK-ATKAGVNKSAHGVRK 291 E + ++ L A+T + F++ +++ + K + G N H +R Sbjct: 182 KAREALEQWLPLRALTNPSDDAVFVSQQGRRLGPRAIQVRVKLAGERELGQNLHPHMLRH 241 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTK 324 A+ ++ + G + + YT Sbjct: 242 SFASHLLESSQDLRAVQELLGHSDIKTTQIYTH 274 >gi|15900773|ref|NP_345377.1| phage integrase family integrase/recombinase [Streptococcus pneumoniae TIGR4] gi|111656825|ref|ZP_01407676.1| hypothetical protein SpneT_02001908 [Streptococcus pneumoniae TIGR4] gi|148988317|ref|ZP_01819764.1| integrase/recombinase, phage integrase family protein [Streptococcus pneumoniae SP6-BS73] gi|148993703|ref|ZP_01823150.1| integrase/recombinase, phage integrase family protein [Streptococcus pneumoniae SP9-BS68] gi|149002427|ref|ZP_01827361.1| integrase/recombinase, phage integrase family protein [Streptococcus pneumoniae SP14-BS69] gi|168490325|ref|ZP_02714524.1| integrase/recombinase, phage integrase family [Streptococcus pneumoniae SP195] gi|182683810|ref|YP_001835557.1| phage integrase family integrase/recombinase [Streptococcus pneumoniae CGSP14] gi|225858687|ref|YP_002740197.1| integrase/recombinase, phage integrase family [Streptococcus pneumoniae 70585] gi|225861217|ref|YP_002742726.1| integrase/recombinase, phage integrase family [Streptococcus pneumoniae Taiwan19F-14] gi|237650544|ref|ZP_04524796.1| integrase/recombinase, phage integrase family protein [Streptococcus pneumoniae CCRI 1974] gi|237822639|ref|ZP_04598484.1| integrase/recombinase, phage integrase family protein [Streptococcus pneumoniae CCRI 1974M2] gi|298229452|ref|ZP_06963133.1| integrase/recombinase, phage integrase family protein [Streptococcus pneumoniae str. Canada MDR_19F] gi|298254243|ref|ZP_06977829.1| integrase/recombinase, phage integrase family protein [Streptococcus pneumoniae str. Canada MDR_19A] gi|298503103|ref|YP_003725043.1| phage integrase/recombinase [Streptococcus pneumoniae TCH8431/19A] gi|303262774|ref|ZP_07348712.1| integrase/recombinase, phage integrase family protein [Streptococcus pneumoniae SP14-BS292] gi|303267703|ref|ZP_07353526.1| integrase/recombinase, phage integrase family protein [Streptococcus pneumoniae BS457] gi|303270062|ref|ZP_07355780.1| integrase/recombinase, phage integrase family protein [Streptococcus pneumoniae BS458] gi|307127558|ref|YP_003879589.1| integrase/recombinase, phage integrase family [Streptococcus pneumoniae 670-6B] gi|14972364|gb|AAK75017.1| integrase/recombinase, phage integrase family [Streptococcus pneumoniae TIGR4] gi|147759364|gb|EDK66356.1| integrase/recombinase, phage integrase family protein [Streptococcus pneumoniae SP14-BS69] gi|147925998|gb|EDK77072.1| integrase/recombinase, phage integrase family protein [Streptococcus pneumoniae SP6-BS73] gi|147927783|gb|EDK78806.1| integrase/recombinase, phage integrase family protein [Streptococcus pneumoniae SP9-BS68] gi|182629144|gb|ACB90092.1| integrase/recombinase, phage integrase family [Streptococcus pneumoniae CGSP14] gi|183571337|gb|EDT91865.1| integrase/recombinase, phage integrase family [Streptococcus pneumoniae SP195] gi|225720290|gb|ACO16144.1| integrase/recombinase, phage integrase family [Streptococcus pneumoniae 70585] gi|225727056|gb|ACO22907.1| integrase/recombinase, phage integrase family [Streptococcus pneumoniae Taiwan19F-14] gi|298238698|gb|ADI69829.1| phage integrase/recombinase [Streptococcus pneumoniae TCH8431/19A] gi|301794021|emb|CBW36419.1| putative integrase/recombinase [Streptococcus pneumoniae INV104] gi|301801716|emb|CBW34422.1| putative integrase/recombinase [Streptococcus pneumoniae INV200] gi|302636096|gb|EFL66593.1| integrase/recombinase, phage integrase family protein [Streptococcus pneumoniae SP14-BS292] gi|302640408|gb|EFL70837.1| integrase/recombinase, phage integrase family protein [Streptococcus pneumoniae BS458] gi|302642766|gb|EFL73090.1| integrase/recombinase, phage integrase family protein [Streptococcus pneumoniae BS457] gi|306484620|gb|ADM91489.1| integrase/recombinase, phage integrase family [Streptococcus pneumoniae 670-6B] gi|332073220|gb|EGI83699.1| phage integrase, N-terminal SAM-like domain protein [Streptococcus pneumoniae GA17570] gi|332076174|gb|EGI86640.1| phage integrase, N-terminal SAM-like domain protein [Streptococcus pneumoniae GA41301] gi|332076339|gb|EGI86804.1| phage integrase, N-terminal SAM-like domain protein [Streptococcus pneumoniae GA17545] Length = 321 Score = 109 bits (273), Expect = 6e-22, Method: Composition-based stats. Identities = 36/275 (13%), Positives = 91/275 (33%), Gaps = 14/275 (5%) Query: 61 INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120 ++ +++ + L+ + + + + ++ + + ++TT +R Sbjct: 33 VDGKKQQKYSNNNLLQLFITAKQVEGCSSKTIRYYQRTIENLFNAI-KESVTQLTTDDLR 91 Query: 121 SGVESRKH----TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176 S + + + + ++ + F W ++EY+ NP +++ K + +T Sbjct: 92 SYLANYQSEKDCSKANLDNIRRILSSFFAWLEQEEYIIKNPIRRIKKIKTEQNVKETYTD 151 Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITV 235 E ++ + E + + L +G+R + + + N + K V Sbjct: 152 EHLEIMRDNC-ENLRDLAIIDLLASTGMRVGELVQLNRSDIDFENRECVVFGKGKKERPV 210 Query: 236 ELPDG----FMKLLAMTPIGKETFFINNDKQ--KMNATQFSIWFKAKATKAGVNK-SAHG 288 L F+ + ++ I + K G+ K H Sbjct: 211 YFDARTKIHLRNYLNDRKDSHPALFVTLVGKVQRLGIAGVEIRLRKLGDKLGIQKVHPHK 270 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 R+ AT + D G ++ G +D Y Sbjct: 271 FRRTLATKAIDKGMPIEQVQKLLGHSKIDTTLAYA 305 >gi|53728778|ref|ZP_00135130.2| COG0582: Integrase [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307252047|ref|ZP_07533947.1| Predicted phage integrase family protein [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306860516|gb|EFM92529.1| Predicted phage integrase family protein [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 311 Score = 109 bits (273), Expect = 6e-22, Method: Composition-based stats. Identities = 51/252 (20%), Positives = 92/252 (36%), Gaps = 18/252 (7%) Query: 88 AVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFK 145 A N+R S + + GD +I +HI+ ++ RK TP+ A + ++ Sbjct: 53 AKNTRQSNLQAIGWLCKFFGDPPIPLERIEPQHIKQYLQWRKDTPAVANIEVGLFNTIWN 112 Query: 146 WAVRQEYVA-INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGL 204 A Y + +P V++ K I +++ F E E G Sbjct: 113 SAREWGYTSLPSPSQGVKKFPTKYREIYV-EDYILEKIYEFADERMAD--IIETAYLLGQ 169 Query: 205 RCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF-FINNDKQK 263 R D C H+ N I I QKTG + E+ +++ + T+ F N +K Sbjct: 170 RPIDICNIHRSHIYNGILHITQQKTGKKVRFEITGRLKEIIDKRLQPETTWLFTNKWGKK 229 Query: 264 MNATQFSIWFKAKATKA---------GVNK-SAHGVRKFSATISADAGATAHELMATYGW 313 ++ ++ F+ KA + K +R +AT + AT + G Sbjct: 230 LDRQILTVHFREIREKAMRAYPELANEIGKVQMRDMRAKAATDISLT-ATDEQAQKQLGH 288 Query: 314 KTVDQAETYTKG 325 + + Y + Sbjct: 289 TSKRMTQHYIRK 300 >gi|329571616|gb|EGG53297.1| tyrosine recombinase XerC [Enterococcus faecalis TX1467] Length = 298 Score = 109 bits (273), Expect = 6e-22, Method: Composition-based stats. Identities = 37/266 (13%), Positives = 93/266 (34%), Gaps = 28/266 (10%) Query: 85 GSLAVNSRISFE---SYFDQIIRKSGD--FDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139 + ++ +++ +F ++ SG+ + + S + ++++ +S + + S Sbjct: 18 RGYSEKTKKAYQEDIQHFFSFLKTSGNDYLTVEHLDVRAYLSELYDQEYSRNSISRKIAS 77 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRLA 195 +R +++ ++ E + NP V K++ R + +++M + + Sbjct: 78 LRSFYQFLLKNEAIQENPFSYVHMKKKQLRLPRFFYEKEMDALFESAQGEQPLDLRNQAL 137 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-ITVE------------LPDGFM 242 E L +G+R S+ V + + G V L + Sbjct: 138 LEVLYGTGIRVSECANLTVDAVDFQASVLLVHGKGNKDRYVPFGSFAQDALKDYLENSRA 197 Query: 243 KLLAMTPIGKETFFINNDKQKMNATQ----FSIWFKAKATKAGVNKSAHGVRKFSATISA 298 L+ F+N+ +++ T + K + A ++ H +R AT Sbjct: 198 LLMTKYQKKHPYVFVNHHGEQITPTGIEYVLNQLIKKSSLNAEIH--PHMLRHTFATHLL 255 Query: 299 DAGATAHELMATYGWKTVDQAETYTK 324 + GA + G + + Y Sbjct: 256 NNGADMRTVQELLGHANLSTTQIYAH 281 >gi|302879884|ref|YP_003848448.1| tyrosine recombinase XerC [Gallionella capsiferriformans ES-2] gi|302582673|gb|ADL56684.1| tyrosine recombinase XerC [Gallionella capsiferriformans ES-2] Length = 317 Score = 109 bits (273), Expect = 6e-22, Method: Composition-based stats. Identities = 41/275 (14%), Positives = 88/275 (32%), Gaps = 26/275 (9%) Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR-- 126 L WL+ E + + S+ + S ++ HIR + Sbjct: 29 GYLAWLLGE-------RRYSKLTAESYARDLAHLFELSTGLALNELKVSHIRRYIAQLHS 81 Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 S + L++ R + + +R NPC+ + PK + + + + Sbjct: 82 SGLGGRSLARLLSAWRGFYNYLLRDHGFTDNPCVGLRAPKSARALPQVLSPDQAVRMVDL 141 Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTIITV----- 235 + + + FE SGLR + + ++++I ++ G + Sbjct: 142 PTDAPDSIRDKAMFELFYSSGLRLMELIDLDAESIRSDITAGEVRVTGKGHKTRIVPLGG 201 Query: 236 ----ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGV 289 L + + IG+ F+ +++ + K K G+ S H + Sbjct: 202 CAISALHEWLAVRPTLANIGERALFVGARGARISPRVVQLRMKQWGIKQGITSSVHPHML 261 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 R AT + + G ++ + YT Sbjct: 262 RHSFATHVLQSSGDLRAVQEMLGHASISTTQVYTH 296 >gi|261364802|ref|ZP_05977685.1| tyrosine recombinase XerC [Neisseria mucosa ATCC 25996] gi|288566830|gb|EFC88390.1| tyrosine recombinase XerC [Neisseria mucosa ATCC 25996] Length = 299 Score = 109 bits (273), Expect = 6e-22, Method: Composition-based stats. Identities = 38/270 (14%), Positives = 93/270 (34%), Gaps = 21/270 (7%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIR---KSGDFDYRKITTKHIRSGVESRKH--- 128 + Y K + ++ ++ +++R + + +T + + ++ Sbjct: 10 LDGYLKMLGQQGKSAHTLSAYGRDLTELVRLLTEGSSETAQDLTRRDFVAALKRLSQQGL 69 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 + + + L++ R W V+ + +P ++++ P+ + +E++ Sbjct: 70 SERTLARKLSAWRQYCGWLVQSSMMDNDPTVNLKAPRLPERLPKALPQEELNHMLDNTPA 129 Query: 189 ----GSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELP---- 238 + FE + SGLR S+ + + S+ T K V L Sbjct: 130 DDGLAVRDHALFELMYGSGLRLSEIHGLDLGDVLLDEGWVSV-TGKGRKERQVPLSGKSV 188 Query: 239 DGFMKLL--AMTPIGKETFFINNDKQKMNATQFSIWFKAKATK--AGVNKSAHGVRKFSA 294 + L + G+ F + ++ Q +A A + +G + S H +R A Sbjct: 189 EALRAYLSERVAADGETALFTGKNGTRLGQRQIQKRLQAWAVQQGSGQHISPHMMRHSYA 248 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTK 324 + + + G + + YTK Sbjct: 249 SHLLQSSRDIRAVQELLGHSNLSTTQIYTK 278 >gi|296273032|ref|YP_003655663.1| integrase family protein [Arcobacter nitrofigilis DSM 7299] gi|296097206|gb|ADG93156.1| integrase family protein [Arcobacter nitrofigilis DSM 7299] Length = 312 Score = 109 bits (273), Expect = 6e-22, Method: Composition-based stats. Identities = 48/304 (15%), Positives = 103/304 (33%), Gaps = 36/304 (11%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQI-----IRKSGDFDYRKITTKHIRSGVE 124 + L+ ++ + +L + ++ Q I D K K + Sbjct: 3 IDKLLKDFFFHCQFEKNLNPKTLNAYTIDIKQFKAFNNIETLSINDVDKDVLKEYIRHLY 62 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE-RPKRKTEGIRPWTKEDMQQFK 183 S P S + L +++ F + +E + ++P + K + + ++++ Sbjct: 63 SIDLKPKSIKRKLATLKSFFNYLEFEEIILVSPFRKMRISIKEQKSLPKTIDIRNIRKLF 122 Query: 184 SF---------------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQ 227 + + + E L +GLR S+ ++ + +I+ Sbjct: 123 KYVYKIKSNNKETESFSYKTIVRDIAILELLFATGLRVSEVSNMKYSNIDLSSGNIRILG 182 Query: 228 KTGTIITVELPDGFMKLLAMT--------PIGKETFFINNDKQKMNATQFSIWFKAKATK 279 K T+++ D +KL+ + FFIN K++ S K Sbjct: 183 KGNKERTIQICDQEVKLILKEYFSLFKDEIYKNKCFFINRLGNKLSEQSISNMIKKYQKN 242 Query: 280 A--GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK---GADRIRLGIK 334 A G + + H R AT+ + G + G ++ + YT+ + L K Sbjct: 243 ANVGQHLTPHMFRHSFATMLLEEGVDIRYIQGMLGHSSISTTQIYTQINMKQQKKILSTK 302 Query: 335 NSRR 338 + RR Sbjct: 303 HPRR 306 >gi|283479604|emb|CAY75520.1| Tyrosine recombinase xerD [Erwinia pyrifoliae DSM 12163] Length = 345 Score = 109 bits (273), Expect = 6e-22, Method: Composition-based stats. Identities = 53/304 (17%), Positives = 108/304 (35%), Gaps = 31/304 (10%) Query: 64 PRKKPTTLKWLI---SEYRKSAHWGS--LAVNSRISFESYF---DQIIRKSGDFDYRKIT 115 P P +L L+ ++R+ +W L V + + ++ I + D + Sbjct: 24 PAHDPKSLYALLLRFVKWRRERNWSETTLKVQTHHGYRFICWAQERGIHHAADVTRPVLE 83 Query: 116 T--KHIRSGVESRKH--TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171 +H+ + +P + L ++V F+W +Q + NP +E P+ + Sbjct: 84 RWQRHLYRYRKGNGEPLSPRTQRTALQPLQVWFRWLAKQNLILANPAADLELPRLEKHLP 143 Query: 172 RP-WTKEDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGV--QHLQNNIFSI 224 R + E ++ + G + R E L +G+R + R I +I Sbjct: 144 RTILSVEQVEDIVNLCDLNTLQGMRDRALLELLWSTGIRRGEVARLETWSADFSRKILTI 203 Query: 225 KTQKTGTIITVELPDGFMKLLA----------MTPIGKETFFINNDK-QKMNATQFSIWF 273 K + + + + L + G + F+ D + A + Sbjct: 204 VQGKGKQDRVIPVGERALWWLRHYLHEVRPEIVAVAGCKALFVAMDGVAGLTANGITHAV 263 Query: 274 KAKATKAGVNKSAHGV-RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 AG+ K + + R AT + GA + A G ++V+ + YT+ + R Sbjct: 264 VPYLRAAGIEKGSCXLFRHAMATQMLENGADLRWIQAMLGHRSVESTQXYTQVSIRALQA 323 Query: 333 IKNS 336 + S Sbjct: 324 VHAS 327 >gi|86158112|ref|YP_464897.1| tyrosine recombinase XerD subunit [Anaeromyxobacter dehalogenans 2CP-C] gi|85774623|gb|ABC81460.1| tyrosine recombinase XerD subunit [Anaeromyxobacter dehalogenans 2CP-C] Length = 314 Score = 109 bits (273), Expect = 6e-22, Method: Composition-based stats. Identities = 39/260 (15%), Positives = 83/260 (31%), Gaps = 22/260 (8%) Query: 89 VNSRISFESYFDQIIRKSGDFDYRKITTKHIRS---GVESRKHTPSSAIQFLTSMRVLFK 145 Y + + + G + ++ I++ + R +P S + L+++R L + Sbjct: 43 EAYGRDLRRYLEHL-DELGVDAWERVGRSEIQAHLAELVRRGLSPRSQARALSAIRSLHR 101 Query: 146 WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS----FWSEGSQPRLAFEFLLY 201 + + +P +E P+ + +++ + + + G + R E L Sbjct: 102 LLAAERVTSADPSDEIESPRPGRRLPGLLSHDEVDRLLAAPDVRSAAGIRDRAMLELLYA 161 Query: 202 SGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFMKLLAMT----------PI 250 +GLR S+ + + + K V + + Sbjct: 162 TGLRVSELVSLQLNDVNLETRVLVARGKGDKERIVPVGAPAADAVKAYLAVARERLLHGR 221 Query: 251 GKETFFINNDKQKMNATQFSIWF--KAKATKAGVNKSAHGVRKFSATISADAGATAHELM 308 + F+ +M F+ A+ S H +R AT + GA + Sbjct: 222 RSKDLFVTPRGGRMTRQGFAKILDRCARRAGIRRRISPHKLRHSFATHLLEGGADLRAVQ 281 Query: 309 ATYGWKTVDQAETYTKGADR 328 G V + YT DR Sbjct: 282 EMLGHADVSTTQIYTH-VDR 300 >gi|237714827|ref|ZP_04545308.1| site-specific recombinase [Bacteroides sp. D1] gi|262406900|ref|ZP_06083449.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|294646188|ref|ZP_06723843.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CC 2a] gi|294810609|ref|ZP_06769260.1| site-specific recombinase, phage integrase family [Bacteroides xylanisolvens SD CC 1b] gi|229445152|gb|EEO50943.1| site-specific recombinase [Bacteroides sp. D1] gi|262355603|gb|EEZ04694.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|292638483|gb|EFF56846.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CC 2a] gi|294442202|gb|EFG11018.1| site-specific recombinase, phage integrase family [Bacteroides xylanisolvens SD CC 1b] Length = 397 Score = 109 bits (272), Expect = 6e-22, Method: Composition-based stats. Identities = 57/295 (19%), Positives = 107/295 (36%), Gaps = 37/295 (12%) Query: 65 RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD-FDYRKITTKHIRSGV 123 + K + +L++ +S GSL N + + ++ GD +R I + S V Sbjct: 99 KSKANVIDYLMNMRSQSKERGSL--NYEKTVGNTIRELKLFRGDYIAFRDIDKDFLNSFV 156 Query: 124 ESRK-HTPSSAIQFLTS---------------MRVLFKWAVRQEYVAINPCLSVE---RP 164 + K +S L + +R A ++ + +NP + + Sbjct: 157 DFLKQAKKASKFGLLKAGGVLSNNSVIAYYGVLRTAINRAYKEGIITVNPTKEFDFASKV 216 Query: 165 KRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL----QNN 220 K + T E++++ + + AF F GLR SD + L + Sbjct: 217 KAEVSRREYLTIEELKRLIGTECKYEIMKQAFLFSCLCGLRVSDIRKLKWNDLQKSGERI 276 Query: 221 IFSIKTQKTGTIITVELPDGFMKLLAMT--PIGKETFF-INNDKQKMNATQFSIWFKAKA 277 IK QKT + + + D +K L G + F + ++ + + A Sbjct: 277 RIEIKMQKTKEPLYLPISDEALKWLPQQNEAKGDDLIFPLTHEG------TINKILQKWA 330 Query: 278 TKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 AG+ + S H R AT+ GA + + G K + + Y K D+ + Sbjct: 331 KDAGIIKHISFHVARHTHATMMLTLGADLYTVSKLLGHKNIATTQIYAKIVDKKK 385 >gi|49483415|ref|YP_040639.1| integrase/recombinase [Staphylococcus aureus subsp. aureus MRSA252] gi|257425306|ref|ZP_05601731.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus 55/2053] gi|257427967|ref|ZP_05604365.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus 65-1322] gi|257430600|ref|ZP_05606982.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus 68-397] gi|257433360|ref|ZP_05609718.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus E1410] gi|257436202|ref|ZP_05612249.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus M876] gi|282903807|ref|ZP_06311695.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus C160] gi|282905570|ref|ZP_06313425.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus Btn1260] gi|282908545|ref|ZP_06316375.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus WW2703/97] gi|282910824|ref|ZP_06318627.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus WBG10049] gi|282914029|ref|ZP_06321816.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus M899] gi|282918951|ref|ZP_06326686.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus C427] gi|282924074|ref|ZP_06331750.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus C101] gi|283957995|ref|ZP_06375446.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus A017934/97] gi|293501061|ref|ZP_06666912.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus 58-424] gi|293510023|ref|ZP_06668731.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus M809] gi|293526609|ref|ZP_06671294.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus M1015] gi|295427739|ref|ZP_06820371.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus EMRSA16] gi|297591303|ref|ZP_06949941.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus MN8] gi|81651263|sp|Q6GHI3|XERC_STAAR RecName: Full=Tyrosine recombinase xerC gi|49241544|emb|CAG40230.1| putative integrase/recombinase [Staphylococcus aureus subsp. aureus MRSA252] gi|257271763|gb|EEV03901.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus 55/2053] gi|257274808|gb|EEV06295.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus 65-1322] gi|257278728|gb|EEV09347.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus 68-397] gi|257281453|gb|EEV11590.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus E1410] gi|257284484|gb|EEV14604.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus M876] gi|282314046|gb|EFB44438.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus C101] gi|282316761|gb|EFB47135.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus C427] gi|282322097|gb|EFB52421.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus M899] gi|282325429|gb|EFB55738.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus WBG10049] gi|282327607|gb|EFB57890.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus WW2703/97] gi|282330862|gb|EFB60376.1| tyrosine recombinase xerC [Staphylococcus aureus subsp. aureus Btn1260] gi|282595425|gb|EFC00389.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus C160] gi|283790144|gb|EFC28961.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus A017934/97] gi|290920681|gb|EFD97744.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus M1015] gi|291096066|gb|EFE26327.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus 58-424] gi|291466967|gb|EFF09485.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus M809] gi|295128097|gb|EFG57731.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus EMRSA16] gi|297576189|gb|EFH94905.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus MN8] gi|312438369|gb|ADQ77440.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus TCH60] gi|315194139|gb|EFU24532.1| putative integrase/recombinase [Staphylococcus aureus subsp. aureus CGS00] gi|323441030|gb|EGA98737.1| integrase/recombinase [Staphylococcus aureus O11] gi|323443899|gb|EGB01510.1| integrase/recombinase [Staphylococcus aureus O46] Length = 298 Score = 109 bits (272), Expect = 6e-22, Method: Composition-based stats. Identities = 37/266 (13%), Positives = 93/266 (34%), Gaps = 22/266 (8%) Query: 85 GSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGVE---SRKHTPSSAIQFLTS 139 + + ++ S++ Q + + + R+ + S +S + +++ Sbjct: 16 RNFSEHTLKSYQDDLIQFNQFLEQEHLQLNTFEYRDARNYLSYLYSNHLKRTSVSRKIST 75 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLA 195 +R +++ + + INP + + PK++ + + +E+M+ E + + R+ Sbjct: 76 LRTFYEYWMTLDENIINPFVQLVHPKKEKYLPQFFYEEEMEALFKTVEEDTSKSLRDRVI 135 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVE--------LPDGFMKLL 245 E L +G+R S+ Q + N ++ K V + + Sbjct: 136 LELLYATGIRVSELVNIKKQDIDFYANGVTV-LGKGSKERFVPFGAYCRQSIENYLEHFK 194 Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATK-AGV-NKSAHGVRKFSATISADAGAT 303 + + +N + + + AGV H +R AT + GA Sbjct: 195 PIQSCNHDFLIVNMKGEAITERGVRYVLNDIVKRTAGVSEIHPHKLRHTFATHLLNQGAD 254 Query: 304 AHELMATYGWKTVDQAETYTKGADRI 329 + + G + YT +++ Sbjct: 255 LRTVQSLLGHVNLSTTGKYTHVSNQQ 280 >gi|86140290|ref|ZP_01058849.1| putative site-specific recombinase [Leeuwenhoekiella blandensis MED217] gi|85832232|gb|EAQ50681.1| putative site-specific recombinase [Leeuwenhoekiella blandensis MED217] Length = 298 Score = 109 bits (272), Expect = 6e-22, Method: Composition-based stats. Identities = 37/255 (14%), Positives = 88/255 (34%), Gaps = 20/255 (7%) Query: 90 NSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH---TPSSAIQFLTSMRVLFKW 146 + E++F + D ++++ ++R+ + + S + ++S++ FK+ Sbjct: 23 AYQKDLEAFFLFLNEHYAVEDPKEVSYVYVRAWIVHLTDVGVSHRSINRKISSLKAFFKF 82 Query: 147 AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG-----SQPRLAFEFLLY 201 + + ++P + K K E P+++ ++ G + Sbjct: 83 LQKTGDIEVSPLAKHKSLKIKKEIQVPFSETEVNTVIKMLQSGEDFSELRDLAIVTLFYA 142 Query: 202 SGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGKETF----- 255 +G+R S+ V + + +IK K + L L +E + Sbjct: 143 TGMRRSELINLKVADIDFDQHNIKVLGKRNKERIIPLIPWLEDGLKKYLSVRENYGVDKN 202 Query: 256 ----FINNDKQKMNATQFSIWFKAKATKA--GVNKSAHGVRKFSATISADAGATAHELMA 309 + + K+ T ++A S H +R AT + GA + + Sbjct: 203 SGFLLLTDKGDKLYETFVCRIINRYFSRASQKTKTSPHMLRHTFATHLLNNGADLNAVKE 262 Query: 310 TYGWKTVDQAETYTK 324 G ++ + YT Sbjct: 263 LLGHASLASTQVYTH 277 >gi|256840382|ref|ZP_05545890.1| tyrosine type site-specific recombinase [Parabacteroides sp. D13] gi|256737654|gb|EEU50980.1| tyrosine type site-specific recombinase [Parabacteroides sp. D13] Length = 376 Score = 109 bits (272), Expect = 6e-22, Method: Composition-based stats. Identities = 43/218 (19%), Positives = 77/218 (35%), Gaps = 21/218 (9%) Query: 127 KHTPSSA---IQFLTSMRVLFKWAVRQEYVAINP---CLSVERPKRKTEGIRPWTKEDMQ 180 K P SA + AVR + + NP E+PK T E+++ Sbjct: 154 KGKPISASTRNTYYQIFNGALNAAVRAKRILKNPFNEMEKSEKPKMPESVRSYMTIEEVR 213 Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT----QKTGTIITVE 236 + + + A+ F + GLR SD + + + + QKT I + Sbjct: 214 SLIATPMQNEGVKSAYLFSCFCGLRISDIIGLQWKDVFIDNGQYRLAVAMQKTKEPIYLP 273 Query: 237 LPDGFMKLL--AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKF 292 L + +K + + F + + K A AG++K + H R Sbjct: 274 LSNEALKWMPERGDKTADDHVF-------DLPSGINQLIKPWAKAAGISKRFTFHTARHT 326 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 AT+ GA + + G +V + Y K ++ + Sbjct: 327 FATMMLTLGADLYTVSKLLGHTSVKMTQVYAKIVNKKK 364 >gi|330998384|ref|ZP_08322208.1| site-specific recombinase, phage integrase family [Paraprevotella xylaniphila YIT 11841] gi|329568490|gb|EGG50295.1| site-specific recombinase, phage integrase family [Paraprevotella xylaniphila YIT 11841] Length = 397 Score = 109 bits (272), Expect = 6e-22, Method: Composition-based stats. Identities = 49/281 (17%), Positives = 98/281 (34%), Gaps = 27/281 (9%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE------ 124 L W+ Y++S + + ++ + + + + R IT + + Sbjct: 109 LDWM-QAYKESQEKKGVRGSGKL-ISNTMNVLRAFNAKATMRDITRDFCLAFINFLRNIY 166 Query: 125 ----SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV---ERPKRKTEGIRPWTKE 177 +K + + + + R AVR+E +A NP + E+ K T + Sbjct: 167 VSPSGKKLSQFTCVSYFGCFRGALNAAVREEIIAENPVNRLNTDEKIKMPESKREFLTID 226 Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQKTGTII 233 +++ + AF F Y GLR SD +++ ++ +I QKT + Sbjct: 227 EVKILIDTPCRREDVKGAFLFSCYCGLRISDVLVLKWKNVDSSAEQWRINIIMQKTRQPL 286 Query: 234 TVELPDGFMKLL--AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289 + L K + ++ F ++ K AG+ K + H Sbjct: 287 YLPLSMNARKWMPERNGAGDEDLVFPTLP----CEDTCNVQLKPWVKAAGITKHVTYHVS 342 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 R AT+ GA + + G V + Y K ++ + Sbjct: 343 RHTFATMLLTLGADLYTVCKLLGHSDVKTTQIYAKIINKKK 383 >gi|313158817|gb|EFR58200.1| phage integrase, N-terminal SAM domain protein [Alistipes sp. HGB5] Length = 300 Score = 109 bits (272), Expect = 6e-22, Method: Composition-based stats. Identities = 47/273 (17%), Positives = 95/273 (34%), Gaps = 28/273 (10%) Query: 79 RKSAHWGSLAVNSRISFESYFDQIIR----KSGDFDYRKITTKHIRSGV----ESRKHTP 130 SA + + +++ +Q + FD R +TT+ IR + E K + Sbjct: 8 YLSAE-RRYSPLTVRNYKHDVEQFLAWLDCDESRFDPRSVTTEQIREWIIFRTEEGKLSA 66 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 S + + S+R F+W R V + + K + M S S Sbjct: 67 GSMNREVASLRAFFRWLHRTGAVEKDIFRMISTLKTSRRLPAFVPESRMTTIVSECGPDS 126 Query: 191 ------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFMK 243 + L GLR ++ + S++ + G V + + + Sbjct: 127 EDFQTERNSLIILMFYACGLRLAELVGIDRSDFSADYTSLRVRGKGDKQRMVPILEFLRE 186 Query: 244 LL----------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRK 291 + + ++ F+ + ++++ + + + T+AGV KS H +R Sbjct: 187 KILHYLGLIERQNICISSEKALFLTHKGKRISRSVVYRTVQEELTRAGVQGKKSPHVLRH 246 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTK 324 AT + GA E+ G ++ + YT Sbjct: 247 TFATHLLNGGADMREIQELLGHASLQATQVYTH 279 >gi|281425134|ref|ZP_06256047.1| integrase/recombinase XerD [Prevotella oris F0302] gi|281400726|gb|EFB31557.1| integrase/recombinase XerD [Prevotella oris F0302] Length = 293 Score = 109 bits (272), Expect = 6e-22, Method: Composition-based stats. Identities = 41/275 (14%), Positives = 104/275 (37%), Gaps = 24/275 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFD----YRKITTKHIRSGVESR-- 126 +I ++ + + + + ++ + D + + + + +R+ +E Sbjct: 2 MIDKFLDYLRFERNRSELTVKNYGDDLRSFEKFFRDLENPVSWESVDSDVVRNWMERMMD 61 Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF--K 183 + +S + L+++R +++A+ ++ V +P + PK+ + +++M + + Sbjct: 62 EGNNAASINRRLSALRSFYRFALSRKLVDKDPVHGITGPKKGKPLPQFLKEKEMDRLLER 121 Query: 184 SFWS---EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPD 239 W+ E + R +G+R S+ + + + +K T K + + Sbjct: 122 KCWTRSFEDVRDRAIIMTFYETGIRLSELTGLDDKMVDFAEYQLKVTGKRNKQRIIPFGE 181 Query: 240 GFMKLL--------AMTPIGKETFFINNDKQKMNATQFSIWFKA-KATKAGVNK-SAHGV 289 L E F+ ++ Q+M+A+ K + +NK S H + Sbjct: 182 ELCTTLRDYMECRDREVDRLSEALFVTDEGQRMSASLVRERVKRSLSKVCTLNKRSPHVL 241 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 R AT + A + G +++ E YT Sbjct: 242 RHTFATAMLNHKAGIESVKKLLGHESLSTTEIYTH 276 >gi|163741610|ref|ZP_02149001.1| Phage integrase [Phaeobacter gallaeciensis 2.10] gi|161385344|gb|EDQ09722.1| Phage integrase [Phaeobacter gallaeciensis 2.10] Length = 540 Score = 109 bits (272), Expect = 6e-22, Method: Composition-based stats. Identities = 53/289 (18%), Positives = 98/289 (33%), Gaps = 27/289 (9%) Query: 58 REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK 117 I+S ++ ++ +Y K + S+ +R + ++ +GD + T+ Sbjct: 235 ERKISSVTPDKNSITAVLEKYCK---FNSIRSGTRSKYRREIARLTAITGDVPLGHVRTE 291 Query: 118 HIRSGVESRKHTP--SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT----EGI 171 ++ + T +S T ++ +F +A ++ + +NP L V+ PK K Sbjct: 292 DLKQLRDGLIGTIQVASIQAIFTPIKGIFAFAFDEDIIPVNPMLGVKLPKDKRPIEERKW 351 Query: 172 RPWTKEDM----QQFKSFWSEGSQ---------PRLAFEFLLYSGLRCSDSCRAGVQHLQ 218 + +T ++ + WS Q + L YSG+R + R + Sbjct: 352 KSFTPTEVIRILNAAEELWSTPVQGLSDARREAIHMVVRVLTYSGMRPVEVIRLEPDDVT 411 Query: 219 NNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGKETFF--INNDKQKMNATQFSIWFKA 275 ++ I KT + V L A G F I D+ FS + Sbjct: 412 DSWIRITGSKTESSTRFVPLHPEIADFPAWVASGGLETFQSIKTDQVGSVRHNFSRLLRK 471 Query: 276 KAT--KAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 K K+ + +R AGA A G K Y Sbjct: 472 KMQNPITDPQKALYSLRSTFVNAMRRAGADIQVQRAILGHKEAGAIRHY 520 >gi|82750853|ref|YP_416594.1| integrase/recombinase [Staphylococcus aureus RF122] gi|123754641|sp|Q2YXL6|XERC_STAAB RecName: Full=Tyrosine recombinase xerC gi|82656384|emb|CAI80803.1| integrase/recombinase [Staphylococcus aureus RF122] Length = 298 Score = 109 bits (272), Expect = 6e-22, Method: Composition-based stats. Identities = 37/267 (13%), Positives = 92/267 (34%), Gaps = 24/267 (8%) Query: 85 GSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGVE---SRKHTPSSAIQFLTS 139 + + ++ S++ Q + + + R+ + S +S + +++ Sbjct: 16 RNFSEHTLKSYQDDLIQFNQFLEQEHLQLNTFEYRDARNYLSYLYSNHLKRTSVSRKIST 75 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLA 195 +R +++ + + INP + + PK++ + + +E+M+ E + + R+ Sbjct: 76 LRTFYEYWMTLDENIINPFVQLVHPKKEKYLPQFFYEEEMEALFKTVEEDTSKSLRDRVI 135 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQ---NNIFSIKTQKTGTIITVE--------LPDGFMKL 244 E L +G+R S+ Q + N + K V + + Sbjct: 136 LELLYATGIRVSELVNIKKQDIDFYANGVTVF--GKGSKERFVPFGAYCRQSIENYLEHF 193 Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK-AGV-NKSAHGVRKFSATISADAGA 302 + + +N + + + AGV H +R AT + GA Sbjct: 194 KPIQSCNHDFLIVNMKGEAITERGVRYVLNDIVKRTAGVSEIHPHKLRHTFATHLLNQGA 253 Query: 303 TAHELMATYGWKTVDQAETYTKGADRI 329 + + G + YT +++ Sbjct: 254 DLRTVQSLLGHVNLSTTGKYTHVSNQQ 280 >gi|261417486|ref|YP_003251169.1| integrase family protein [Fibrobacter succinogenes subsp. succinogenes S85] gi|261373942|gb|ACX76687.1| integrase family protein [Fibrobacter succinogenes subsp. succinogenes S85] gi|302327853|gb|ADL27054.1| site-specific recombinase, phage integrase family [Fibrobacter succinogenes subsp. succinogenes S85] Length = 297 Score = 109 bits (272), Expect = 6e-22, Method: Composition-based stats. Identities = 40/259 (15%), Positives = 86/259 (33%), Gaps = 20/259 (7%) Query: 85 GSLAVNSRISFE---SYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHTPSSAIQFL 137 +L+ + S++ +F + ++G D + + + + + +++P+S + Sbjct: 19 RNLSPVTIQSYQEDLRHFIAWLDENG-IDLKDLQPEKLDEFLTLTAGQEEYSPTSVARHF 77 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG---SQPRL 194 +S+R K+ Q + + PK + T+E++ + G + Sbjct: 78 SSLRGFLKYMQIQGEYDYSTESMLATPKLGHYLPQYLTREEIDSVFESAANGKNPLRDTA 137 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLLAM------ 247 E + GLR S++ + + N + + K V L + L Sbjct: 138 LIELMYSGGLRISEALGIKLSQIDLENEWLMPIGKGNKQRLVPLGSKAKENLRAWIEEGR 197 Query: 248 --TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAH 305 T + +N + M+ + S H R AT +AG Sbjct: 198 PLTHPTTDNIILNAHGKPMSRMGAWKIVQLHTMHLSKQVSPHTFRHSFATHCLEAGMDLR 257 Query: 306 ELMATYGWKTVDQAETYTK 324 L G + + YT Sbjct: 258 VLQELLGHADISTTQIYTH 276 >gi|241764726|ref|ZP_04762736.1| integrase family protein [Acidovorax delafieldii 2AN] gi|241365779|gb|EER60442.1| integrase family protein [Acidovorax delafieldii 2AN] Length = 335 Score = 109 bits (272), Expect = 7e-22, Method: Composition-based stats. Identities = 53/339 (15%), Positives = 110/339 (32%), Gaps = 37/339 (10%) Query: 10 FVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69 + R G YYF KG R + + S L + K+ N Sbjct: 3 YFRSRTHRSGTTYYYFDKGGKPRKEIALGKDYVMAVRKWSELIAAEEKKAVAN------- 55 Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR 126 + L +Y + A +++ S + +I HI + ++ + Sbjct: 56 -FRDLADKYEREVVPLK-AKSTQTLQASDIKLLREFFCTPSPAPLDEIKPSHIHALLQWK 113 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAI-NPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 KH +A + + +F A Y NPC ++ K +++ +++ Sbjct: 114 KHQAPTANRLKRTFSHMFNMARAWGYTEKANPCAGIKGLPVKKREQYI--TDEV--YRAV 169 Query: 186 WSEGSQP-RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244 W+ + P R A + +G R +D+ +++ + KTG + + + L Sbjct: 170 WNVAAWPLRDAMDLAYLTGQRPADTVGMTDDDIEDGRLKVTQGKTGAKLRIRIEGELAVL 229 Query: 245 LAMTPIGKE-------TFFINNDKQKMNATQFSIWFKAKATKAG----------VNKSAH 287 L K+ + +N + ++ +K TKA + Sbjct: 230 LDRIKARKDACKMWSASLVVNQAGESLSQKALGEVYKRARTKAAKLNPKLADQIKTMRFY 289 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKG 325 +R +A ++ A G +V + Y + Sbjct: 290 DLRAKAADDVSEVRGEAAA-AELLGHDSVTTTQRHYLRK 327 >gi|299822639|ref|ZP_07054525.1| tyrosine recombinase XerC [Listeria grayi DSM 20601] gi|299816168|gb|EFI83406.1| tyrosine recombinase XerC [Listeria grayi DSM 20601] Length = 304 Score = 109 bits (272), Expect = 7e-22, Method: Composition-based stats. Identities = 39/245 (15%), Positives = 85/245 (34%), Gaps = 22/245 (8%) Query: 100 DQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCL 159 ++II D R + + + + ++++ S+ + L+S+R + + +R + +A NP Sbjct: 45 EEIIESL--TDVRYLEVRVYLTRLREKEYSRSTVSRKLSSLRSFYTFLLRDQQIAENPFS 102 Query: 160 SVERPKRKTEGIRPWTKEDMQQFKSFWS-----EGSQPRLAFEFLLYSGLRCSDSCRAGV 214 V K + + E+M+ + + R E L +G+R S+ + Sbjct: 103 YVSHSKNHLRLPKFFYSEEMEALFTVVYQDDKLLTLRNRALLEILYGTGIRVSECADIRL 162 Query: 215 QHLQNNIFSIKTQKTGTI-------------ITVELPDGFMKLLAMTPIGKETFFINNDK 261 + SI + G + + L L+ + F+N+ Sbjct: 163 ADIDATYQSILIRGKGNKERYVPFGAYAEDAVQLYLEASRKALMEKYHKEHDYLFVNHYG 222 Query: 262 QKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQA 319 + A + + H +R AT + GA + G ++ Sbjct: 223 DPLTPRGIRYCLSKTIESAAMTRKIHPHMLRHTFATDLLNNGADMRTVQELLGHASLSST 282 Query: 320 ETYTK 324 + YT Sbjct: 283 QIYTH 287 >gi|189423412|ref|YP_001950589.1| tyrosine recombinase XerC [Geobacter lovleyi SZ] gi|254799343|sp|B3E1H7|XERC_GEOLS RecName: Full=Tyrosine recombinase xerC gi|189419671|gb|ACD94069.1| tyrosine recombinase XerC [Geobacter lovleyi SZ] Length = 317 Score = 109 bits (272), Expect = 7e-22, Method: Composition-based stats. Identities = 44/217 (20%), Positives = 75/217 (34%), Gaps = 21/217 (9%) Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED-MQQFKS----- 184 SS + L ++R F W VR + +NP + PKR+ + + ++ Sbjct: 80 SSIGRKLAAVRAFFGWLVRTRQLEVNPAELIATPKREQRLPFHLNIDQTVTLIEAPGHTG 139 Query: 185 -FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFM 242 ++ E L SGLR S+ V L ++ K G V + + Sbjct: 140 QEQPTFARDTAILELLYSSGLRVSELTGLAVADLDRAAGMVRVQGKGGKERIVPVGSAAL 199 Query: 243 KLL------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK----SAHGVRKF 292 + L F+ ++N + K A+ G+ S H +R Sbjct: 200 EALEQYLAGRGQLADDAPLFLGCRGARINRRTVAQLVKRWAS--GIPAFRSISPHTLRHT 257 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTK-GADR 328 AT + GA + G ++ + YT G DR Sbjct: 258 FATHMLEGGADLRSIQELLGHSSLSTTQKYTHVGLDR 294 >gi|148984624|ref|ZP_01817892.1| integrase/recombinase, phage integrase family protein [Streptococcus pneumoniae SP3-BS71] gi|148997026|ref|ZP_01824680.1| integrase/recombinase, phage integrase family protein [Streptococcus pneumoniae SP11-BS70] gi|149007165|ref|ZP_01830829.1| integrase/recombinase, phage integrase family protein [Streptococcus pneumoniae SP18-BS74] gi|149010476|ref|ZP_01831847.1| integrase/recombinase, phage integrase family protein [Streptococcus pneumoniae SP19-BS75] gi|168484778|ref|ZP_02709723.1| integrase/recombinase, phage integrase family [Streptococcus pneumoniae CDC1873-00] gi|168575549|ref|ZP_02721485.1| integrase/recombinase, phage integrase family [Streptococcus pneumoniae MLV-016] gi|169832442|ref|YP_001694344.1| phage integrase family integrase/recombinase [Streptococcus pneumoniae Hungary19A-6] gi|194397446|ref|YP_002037527.1| phage integrase family integrase/recombinase [Streptococcus pneumoniae G54] gi|221231667|ref|YP_002510819.1| putative integrase/recombinase [Streptococcus pneumoniae ATCC 700669] gi|225854397|ref|YP_002735909.1| integrase/recombinase, phage integrase family [Streptococcus pneumoniae JJA] gi|225856554|ref|YP_002738065.1| integrase/recombinase, phage integrase family [Streptococcus pneumoniae P1031] gi|307067543|ref|YP_003876509.1| integrase [Streptococcus pneumoniae AP200] gi|147756726|gb|EDK63766.1| integrase/recombinase, phage integrase family protein [Streptococcus pneumoniae SP11-BS70] gi|147761203|gb|EDK68170.1| integrase/recombinase, phage integrase family protein [Streptococcus pneumoniae SP18-BS74] gi|147764957|gb|EDK71886.1| integrase/recombinase, phage integrase family protein [Streptococcus pneumoniae SP19-BS75] gi|147923015|gb|EDK74130.1| integrase/recombinase, phage integrase family protein [Streptococcus pneumoniae SP3-BS71] gi|168994944|gb|ACA35556.1| integrase/recombinase, phage integrase family [Streptococcus pneumoniae Hungary19A-6] gi|172042056|gb|EDT50102.1| integrase/recombinase, phage integrase family [Streptococcus pneumoniae CDC1873-00] gi|183578532|gb|EDT99060.1| integrase/recombinase, phage integrase family [Streptococcus pneumoniae MLV-016] gi|194357113|gb|ACF55561.1| integrase/recombinase, phage integrase family [Streptococcus pneumoniae G54] gi|220674127|emb|CAR68646.1| putative integrase/recombinase [Streptococcus pneumoniae ATCC 700669] gi|225723828|gb|ACO19681.1| integrase/recombinase, phage integrase family [Streptococcus pneumoniae JJA] gi|225725861|gb|ACO21713.1| integrase/recombinase, phage integrase family [Streptococcus pneumoniae P1031] gi|301799879|emb|CBW32455.1| putative integrase/recombinase [Streptococcus pneumoniae OXC141] gi|306409080|gb|ADM84507.1| Integrase [Streptococcus pneumoniae AP200] Length = 321 Score = 109 bits (272), Expect = 7e-22, Method: Composition-based stats. Identities = 36/275 (13%), Positives = 91/275 (33%), Gaps = 14/275 (5%) Query: 61 INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120 ++ +++ + L+ + + + + ++ + + ++TT +R Sbjct: 33 VDGKKQQKYSNNNLLQLFITAKQVEGCSSKTIRYYQRTIENLFNAI-KESVTQLTTDDLR 91 Query: 121 SGVESRKH----TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176 S + + + + ++ + F W ++EY+ NP +++ K + +T Sbjct: 92 SYLANYQSEKDCSKANLDNIRRILSSFFAWLEQEEYIIKNPIRRIKKIKTEQNVKETYTD 151 Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITV 235 E ++ + E + + L +G+R + + + N + K V Sbjct: 152 EHLEIMRDNC-ENLRDLAIIDLLASTGMRVGELVQLNRSDIDFENRECVVFGKGKKERPV 210 Query: 236 ELPDG----FMKLLAMTPIGKETFFINNDKQ--KMNATQFSIWFKAKATKAGVNK-SAHG 288 L F+ + ++ I + K G+ K H Sbjct: 211 YFDARTKIHLRNYLNDRKDSHPALFVTLVGKAQRLGIAGVEIRLRKLGDKLGIQKVHPHK 270 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 R+ AT + D G ++ G +D Y Sbjct: 271 FRRTLATKAIDKGMPIEQVQKLLGHSKIDTTLAYA 305 >gi|237711657|ref|ZP_04542138.1| tyrosine type site-specific recombinase [Bacteroides sp. 9_1_42FAA] gi|237725901|ref|ZP_04556382.1| tyrosine type site-specific recombinase [Bacteroides sp. D4] gi|265753077|ref|ZP_06088646.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_33FAA] gi|229435709|gb|EEO45786.1| tyrosine type site-specific recombinase [Bacteroides dorei 5_1_36/D4] gi|229454352|gb|EEO60073.1| tyrosine type site-specific recombinase [Bacteroides sp. 9_1_42FAA] gi|263236263|gb|EEZ21758.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_1_33FAA] Length = 293 Score = 109 bits (272), Expect = 7e-22, Method: Composition-based stats. Identities = 39/265 (14%), Positives = 94/265 (35%), Gaps = 24/265 (9%) Query: 76 SEYRKSAHW-GSLAVNSRISFESYF----DQIIRKSGDFDYRKITTKHIRSGVESR---K 127 + + + + + +S+ + I K + D+ + +R V + Sbjct: 4 DSFLDYLRFERNYSEKTIVSYGIDLIKFEEYIRGKDENVDFTTVDADLVRGWVMNLIEDG 63 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 +T +S + L+S+R +++ +++ + +P L + PK K + +M + Sbjct: 64 YTSASVNRKLSSLRSFYRFLLKKGVIGEDPMLKIIGPKNKKPLPVFLKEREMDRLLDDVP 123 Query: 188 -----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGF 241 G + R+ E +G+R S+ + + IK T K + + Sbjct: 124 FKEDFTGCRDRMVLEMFYATGMRLSELIGLNDVDVDFSASLIKVTGKRNKQRLIPFGEEL 183 Query: 242 MKLL--------AMTPIGKETFFINNDKQKMNATQFSIWFKA--KATKAGVNKSAHGVRK 291 + + + P FF+ + ++M + + K + +S H +R Sbjct: 184 RRAMFVYLKIRNEVLPGKAGAFFVLKNGKRMYPGKVYLLVKRNLSKVVSLKKRSPHVLRH 243 Query: 292 FSATISADAGATAHELMATYGWKTV 316 AT + A + G ++ Sbjct: 244 TFATAMLNNEAELGAVKELLGHSSL 268 >gi|57238849|ref|YP_179985.1| tyrosine recombinase xerD [Ehrlichia ruminantium str. Welgevonden] gi|58578779|ref|YP_196991.1| tyrosine recombinase xerD [Ehrlichia ruminantium str. Welgevonden] gi|57160928|emb|CAH57833.1| putative integrase/recombinase XerD or XerC [Ehrlichia ruminantium str. Welgevonden] gi|58417405|emb|CAI26609.1| Tyrosine recombinase xerD [Ehrlichia ruminantium str. Welgevonden] Length = 312 Score = 109 bits (272), Expect = 7e-22, Method: Composition-based stats. Identities = 42/273 (15%), Positives = 95/273 (34%), Gaps = 33/273 (12%) Query: 90 NSRISFESYFDQIIRKSGDFDYRKITT-----KHIRSGVESRKHTPSSAIQFLTSMRVLF 144 N+ S+ S + + + I K + R++ S+ + +++++ L+ Sbjct: 24 NTYQSYMSDLLDLCKFFDCKNLALIEVSRDDLKDYVRLMHKREYKSSTISRKISAIKNLY 83 Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-----SEGSQPRLAFEFL 199 K+ + +A +P LS++ P+ + E++ + +G + L Sbjct: 84 KFFCKDNIIAYDPALSIDFPRLSRTLPKALNIEEVSRLLDTAALDSSPDGLRTNAIINIL 143 Query: 200 LYSGLRCSDSCRAGV---------QHLQNNIFSIKTQKTGTIIT-------VELPDGFMK 243 SG+R S+ + +++ + +I+ + I V + Sbjct: 144 YSSGIRVSELIYLKLNSIKEALNNDNIEISYITIRGKANRERIVLLNSSAIVSIQKYLEV 203 Query: 244 LLAMTPIGKE----TFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKFSATI 296 + P G E F + + K + AGV+ S H +R AT Sbjct: 204 YMHFVPNGYEISQWLFPGTKFDNPITRQRIGQLLKDLSISAGVDMTRISPHKLRHSFATH 263 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRI 329 + G+ + G ++ + YT A+ Sbjct: 264 LLNNGSDIIFIQKMLGHTSLSTTQIYTYVANEK 296 >gi|299769077|ref|YP_003731103.1| site-specific tyrosine recombinase [Acinetobacter sp. DR1] gi|298699165|gb|ADI89730.1| site-specific tyrosine recombinase [Acinetobacter sp. DR1] Length = 310 Score = 109 bits (272), Expect = 7e-22, Method: Composition-based stats. Identities = 50/279 (17%), Positives = 98/279 (35%), Gaps = 27/279 (9%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGVESR---- 126 L+S + K + + ++ ++E + + D R I +R + R Sbjct: 10 QLLSMWLKERKIQNQSEHTITAYERDVKSFLEFCELKQIDLRNIEASDLREYLAQRVEQD 69 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF- 185 + + SS + LTS+R KWA + +Y+ INP + ++ E + Q Sbjct: 70 QLSSSSMQRHLTSIRQFMKWAEQGKYLEINPTDDFKLKRQPRPLPGMIDIETVNQILDQS 129 Query: 186 -------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV--- 235 + + E L SGLR ++ ++ + N ++ G + Sbjct: 130 MPEKPIDQQLWLRDKAMLELLYSSGLRLAELQGLTIKDIDFNRQLVRITGKGNKTRIVPF 189 Query: 236 --ELPDGFMKLLAMTPIGKETF------FINNDKQKMNATQFSIWFKAKATKAGV--NKS 285 + + + L + I K F FI+ + Q K +A +AGV + Sbjct: 190 GKKAKESLLNWLKIYKIWKGHFDQNAFVFISQRGGALTPRQIEKRVKLQAQRAGVNVDLH 249 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R A+ + + G + + YT Sbjct: 250 PHLLRHCFASHMLSSSGDLRSVQEMLGHSNLSTTQIYTH 288 >gi|229176440|ref|ZP_04303876.1| Site-specific recombinase, phage integrase [Bacillus cereus MM3] gi|228607031|gb|EEK64417.1| Site-specific recombinase, phage integrase [Bacillus cereus MM3] Length = 322 Score = 109 bits (272), Expect = 7e-22, Method: Composition-based stats. Identities = 42/284 (14%), Positives = 91/284 (32%), Gaps = 28/284 (9%) Query: 86 SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES---RKHTPSSAIQFLTSMRV 142 + + F +R+ IT H++ + R+ P++ +++++ Sbjct: 41 GFRKRTIDDYSKLFRYFMRELNIEKVEIITAAHVQMYINKLLNRELAPATVNIRISALKS 100 Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRLAFEF 198 +FK Y+ NP + + + I +++ G + A Sbjct: 101 VFKRLNELGYIKSNPAVDFVKLRTDEAPIFTLNHNQIKRIFRVVDKTTYAGYRDYCAMLL 160 Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSIKTQ----KTGTIITVELPDGFMKLLAMTPIGKET 254 +L+ GLR ++ + + + +I K V + + L M Sbjct: 161 MLHCGLRVNEVNQLEANDIDFDNLTIMLAGAKNKNRKTRAVPMTKKVAEELRMLIDESRE 220 Query: 255 FF-------INNDKQKMNATQFSIWFKAKATKAGVNK----SAHGVRKFSATISADAGAT 303 +F + + + ++ T AG+ K S H +R AT G + Sbjct: 221 YFEGVTNVFLTQEGKVIDNDLLRKRMYRYGTLAGLLKECRPSPHSLRHTFATNFLRNGGS 280 Query: 304 AHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347 + LM G + Y RL + + V + + Sbjct: 281 VNALMRIMGHADITTTMRYV------RLNDEAVKEQYEKVAAKN 318 >gi|194367246|ref|YP_002029856.1| site-specific tyrosine recombinase XerC [Stenotrophomonas maltophilia R551-3] gi|194350050|gb|ACF53173.1| tyrosine recombinase XerC [Stenotrophomonas maltophilia R551-3] Length = 296 Score = 109 bits (272), Expect = 7e-22, Method: Composition-based stats. Identities = 35/255 (13%), Positives = 79/255 (30%), Gaps = 15/255 (5%) Query: 85 GSLAVNSRISFESYFDQII-----RKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139 ++ ++ ++ D + R T + + R + S + L++ Sbjct: 15 RRMSAHTLDAYRRDLDALSVWAEPRGMAVEALDAETLRQFVADEHRRGLSAKSLQRRLSA 74 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS---QPRLAF 196 R + W ++ + +NP +++ P+ + ++ Q EG + R Sbjct: 75 CRSFYAWLLKHGRIEVNPAATLKAPRAPRRLPQVLDADEAVQLVELEPEGELGRRDRALL 134 Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT-----VELPDGFMKLLAMTPIG 251 E SGLR S+ C + L + G + A + G Sbjct: 135 ELFYSSGLRLSEVCALTWRDLDFASGLVNVMGKGNRQRRVPFGRPAREALQAWRAESGGG 194 Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMA 309 ++ I + A + G+ + H +R A+ ++ + Sbjct: 195 PAMPVFPGRNGPISQRAVQIRIRQLAQRQGLFKHVHPHMLRHSFASHILESSGDLRGVQE 254 Query: 310 TYGWKTVDQAETYTK 324 G + + YT Sbjct: 255 LLGHADIATTQIYTH 269 >gi|71042119|pdb|1Z19|A Chain A, Crystal Structure Of A Lambda Integrase(75-356) Dimer Bound To A Coc' Core Site gi|71042120|pdb|1Z19|B Chain B, Crystal Structure Of A Lambda Integrase(75-356) Dimer Bound To A Coc' Core Site Length = 283 Score = 109 bits (272), Expect = 7e-22, Method: Composition-based stats. Identities = 50/277 (18%), Positives = 96/277 (34%), Gaps = 19/277 (6%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH- 128 TL + Y K + + I++ S I R D ITTK I + + Sbjct: 2 TLHSWLDRYEKILASRGIKQKTLINYXSKIKAIRRGLPDAPLEDITTKEIAAXLNGYIDE 61 Query: 129 -TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 +SA +++ F+ A+ + ++ N + K K R E ++ +++ S Sbjct: 62 GKAASAKLIRSTLSDAFREAIAEGHITTNHVAATRAAKSKVRRSRLTADEYLKIYQAAES 121 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE---------LP 238 RLA E + +G R D C + + ++ KTG I + + Sbjct: 122 SPCWLRLAXELAVVTGQRVGDLCEXKWSDIVDGYLYVEQSKTGVKIAIPTALHIDALGIS 181 Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-----NKSAHGVRKFS 293 +G ET + ++ +++ S +F +G+ + H +R Sbjct: 182 XKETLDKCKEILGGETIIASTRREPLSSGTVSRYFXRARKASGLSFEGDPPTFHELR-SL 240 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 + + + G K+ A DR R Sbjct: 241 SARLYEKQISDKFAQHLLGHKSDTXASQ--XRDDRGR 275 >gi|283479611|emb|CAY75527.1| Tyrosine recombinase xerD [Erwinia pyrifoliae DSM 12163] Length = 344 Score = 109 bits (272), Expect = 7e-22, Method: Composition-based stats. Identities = 52/304 (17%), Positives = 107/304 (35%), Gaps = 31/304 (10%) Query: 64 PRKKPTTLKWLISEY---RKSAHWGS--LAVNSRISFESYF---DQIIRKSGDFDYRKIT 115 P P +L L+ + R+ +W L V + + ++ I + D + Sbjct: 24 PAHDPKSLYALLLRFVKWRRERNWSETTLKVQTHHGYRFICWAQERGIHHAADVTRPVLE 83 Query: 116 T--KHIRSGVESRKH--TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171 +H+ + +P + L ++V F+W +Q + NP +E P+ + Sbjct: 84 RWQRHLYRYRKGNGEPLSPRTQRTALQPLQVWFRWLAKQNLILANPAADLELPRLEKHLP 143 Query: 172 RP-WTKEDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGV--QHLQNNIFSI 224 R + E ++ + G + R E L +G+R + R I +I Sbjct: 144 RTILSVEQVEDIVNLCDLNTLQGMRDRALLELLWSTGIRRGEVARLETWSADFSRKILTI 203 Query: 225 KTQKTGTIITVELPDGFMKLLA----------MTPIGKETFFINNDK-QKMNATQFSIWF 273 K + + + + L + G + F+ D + A + Sbjct: 204 VQGKGKQDRVIPVGERALWWLRHYLHEVRPEIVAVAGCKALFVAMDGVAGLTANGITHAV 263 Query: 274 KAKATKAGVNKSAHGV-RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 AG+ K + + R AT + GA + A G ++V+ + YT+ + + Sbjct: 264 VPYLRAAGIEKGSCXLFRHAMATQMLENGADLRWIQAMLGHRSVESTQIYTQVSIKALQA 323 Query: 333 IKNS 336 + S Sbjct: 324 VHAS 327 >gi|309810567|ref|ZP_07704384.1| site-specific recombinase, phage integrase family [Dermacoccus sp. Ellin185] gi|308435481|gb|EFP59296.1| site-specific recombinase, phage integrase family [Dermacoccus sp. Ellin185] Length = 422 Score = 109 bits (272), Expect = 7e-22, Method: Composition-based stats. Identities = 59/299 (19%), Positives = 107/299 (35%), Gaps = 30/299 (10%) Query: 55 TPKREYINSPRKKPTTLKWLISEY--RKSAHWGSLAVNSRISFESYFDQIIR-KSGDFDY 111 TP N PRK TL E+ R+ L +R ++ + ++ GD Sbjct: 63 TPPSVRANRPRKGDPTLAEWWPEFIERRRVDGEPLRPTTRAWYDQLYRHYLKPTLGDVPL 122 Query: 112 RKITTKHIRSGVESRKHTPSSAIQ--FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169 + IT +++ + S+++ ++R A+ + + NPC ++ ++K Sbjct: 123 KGITAARVKAWWDDFPTDRGSSVRPNAYMALRAAMSQALEEGLIITNPCT-IKVQRKKKR 181 Query: 170 GIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229 + T+E + S E P + GLR + + +I+ ++ Sbjct: 182 ELEVATREQVATIHSHMPEAFAP--IVTIAAWCGLRFGEIIELRRGDIDLARRTIRVERA 239 Query: 230 GTII----------------TVELP----DGFMKLLAMTPIGKETFFINND-KQKMNATQ 268 + + TV +P D + L + + + Q Sbjct: 240 VSRVHGKFIVGPPKSDAGIRTVSMPTAVADELEQHLERHVRPEPDALVFEYCGHHLQQPQ 299 Query: 269 FSIWFKAKATKAG-VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 FSIW++ AG + H +R SA A GAT +LMA G + A Y A Sbjct: 300 FSIWWRYARGMAGRPDLRLHDLRHTSAVWYAQQGATLADLMARLGHSSPTMALHYQHAA 358 >gi|86751622|ref|YP_488118.1| Phage integrase [Rhodopseudomonas palustris HaA2] gi|86574650|gb|ABD09207.1| tyrosine recombinase XerD subunit [Rhodopseudomonas palustris HaA2] Length = 310 Score = 109 bits (272), Expect = 7e-22, Method: Composition-based stats. Identities = 50/279 (17%), Positives = 103/279 (36%), Gaps = 36/279 (12%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRK--------ITTKHIRSGVE---SRKHTPSSA 133 L+ ++ ++ G + I T H+R+ +E RK + ++ Sbjct: 18 RQLSDHTLQAYGYDLADFAAWVGTRRRKDKAFSAGAPIETDHLRAYLEHMTERKLSAATV 77 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLS--VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191 + L +R F++ + + NP ++ PKRK R ++++ Q Sbjct: 78 RRRLACLRSFFRYLEDRGTMP-NPFDGWRLKLPKRK-RLPRTLSRDETTQLLKSARAPGA 135 Query: 192 PRLA----------FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-ITVELPD- 239 R A ++ +G+R + C+ + ++ +I+ G+ V + D Sbjct: 136 ARHAAPESPSLCTEIRLMIATGIRIGELCKIASTDVSSDGAAIRIHGKGSRDRMVYVTDN 195 Query: 240 -------GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290 L T G F+N + K+ F + A +AGV + + H +R Sbjct: 196 GLRAELRKLAVLRQRTLGGDGPLFLNRNGDKLRPHSFRAKLRNFAGQAGVRRRVTPHMLR 255 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 +AT+ ++G + G ++ E YT +D Sbjct: 256 HTAATLLIESGVDIRIVQRLLGHSSIATTEIYTHVSDEA 294 >gi|260912682|ref|ZP_05919168.1| tyrosine recombinase XerC [Pasteurella dagmatis ATCC 43325] gi|260633060|gb|EEX51225.1| tyrosine recombinase XerC [Pasteurella dagmatis ATCC 43325] Length = 296 Score = 109 bits (272), Expect = 7e-22, Method: Composition-based stats. Identities = 41/273 (15%), Positives = 98/273 (35%), Gaps = 23/273 (8%) Query: 74 LISEYRKSAH-WGSLAVNSRISFESYFDQIIR---KSGDFDYRKITTKHIRSGVES---- 125 L+ +Y ++ ++ +++ ++I++ ++G ++++T +R + Sbjct: 4 LLEKYWNYLRIERQVSPHTLSNYQRQLNRIVQILNENGMTSWQEVTPSVVRFILAESSKT 63 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS- 184 K S L+++R + V+Q+ + +N + PK+ + E +Q+ S Sbjct: 64 DKLHEKSLALRLSALRRFLTYLVQQDELKVNAATGISAPKQGRHLPKNIDAEQVQKLLSN 123 Query: 185 --FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV------- 235 + R E L SGLR S+ + + + ++ G + Sbjct: 124 DSKEPIDIRDRAILELLYSSGLRLSELQGLNLNSINTRVREVRVIGKGNKERIVPFGRYA 183 Query: 236 --ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRK 291 + L P + F++ ++ + K G+N + H +R Sbjct: 184 SHAIQQWLKVRLLFNP-KDDALFVSQLGNRLTHRTIQKRLEVWGIKQGLNSHLNPHKLRH 242 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTK 324 AT +A + + G + + YT Sbjct: 243 SFATHMLEASSDLRAVQELLGHSNLSTTQIYTH 275 >gi|114705350|ref|ZP_01438258.1| tyrosine recombinase [Fulvimarina pelagi HTCC2506] gi|114540135|gb|EAU43255.1| tyrosine recombinase [Fulvimarina pelagi HTCC2506] Length = 323 Score = 109 bits (272), Expect = 7e-22, Method: Composition-based stats. Identities = 40/286 (13%), Positives = 93/286 (32%), Gaps = 33/286 (11%) Query: 72 KWLISEYRKSAH-WGSLAVNSRISFESYFDQ----IIRKSGDFDYRKITTKHIRSGVESR 126 +I + + A N+ ++ D + G + + + + Sbjct: 16 GAVIEAFLEMMAVERGAADNTLQAYARDLDAARSFLKPHGGLMRADSDAIRAYLTSLSAE 75 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + S+ + L+++R L+++ + +P +E ++K + +++++ + Sbjct: 76 GLSESTRSRRLSALRQLYRFLYTEGRRTDDPTSPIEGARKKRPLPKVMSEDEVDRLLDLA 135 Query: 187 SEGS--------------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGT 231 + + R+ E L +GLR S+ L N +I K Sbjct: 136 EAETNDAELSPSSRVRAIRLRVLVELLYATGLRVSELVSLPKSMLVNRARTITVLGKGNK 195 Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDK----------QKMNATQFSIWFKAKATKAG 281 V + + L + +NN+ ++ F+ K A + G Sbjct: 196 ERLVPIGAAARESLDAYGQALKAAGLNNEGPWLFPADSESGHLSRQVFARELKGLAARTG 255 Query: 282 V---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 + S H +R A+ GA + G + + YT Sbjct: 256 ISAAKISPHVLRHAFASHLLQNGADLRAVQELLGHADISTTQIYTH 301 >gi|313901986|ref|ZP_07835402.1| integrase family protein [Thermaerobacter subterraneus DSM 13965] gi|313467775|gb|EFR63273.1| integrase family protein [Thermaerobacter subterraneus DSM 13965] Length = 380 Score = 109 bits (272), Expect = 7e-22, Method: Composition-based stats. Identities = 51/304 (16%), Positives = 100/304 (32%), Gaps = 38/304 (12%) Query: 65 RKKPTTL--KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFD------YRKIT 115 R +L ++ Y L+ + ++ ++ G ++ Sbjct: 14 RIPAGSLPAADVVEAYLDHLRLERGLSPRTVEAYAGDLAGWLQFLGLEPPVGAAALAGVS 73 Query: 116 TKHIRSGV---ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172 + +R + E R +S + L ++R LF++AVR+ ++A +P + P+ + R Sbjct: 74 GRDLRRWLAHLEERGLARASVARKLAAVRGLFRYAVREGWLAASPAARLATPRLRRRLPR 133 Query: 173 PWTKEDMQQFKS-----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT- 226 +T E+ Q + R E L GLR ++ + + ++ Sbjct: 134 VYTPEEAQALLEAAASGHGPAALRDRAILELLYGCGLRVAELSGLDLDDVDLEGGWLRVY 193 Query: 227 QKTGTIITVELPDGFMKLLAM------------------TPIGKETFFINNDKQKMNATQ 268 K G + L L P + F+N +++ Sbjct: 194 GKGGKERILPLAGPVAAALRAYLEEGRPGFLEGRRHRPCRPADAQAVFLNRWGGRLSPRG 253 Query: 269 FSIWFKAK-ATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 + A A + H +R AT D GA + G ++ + YT Sbjct: 254 IQAIVRRVGAVVARLQAHPHLLRHTFATHLLDGGAGLRAVQELLGHASLAATQVYTH-VS 312 Query: 328 RIRL 331 R RL Sbjct: 313 RARL 316 >gi|326382897|ref|ZP_08204587.1| site-specific tyrosine recombinase XerC [Gordonia neofelifaecis NRRL B-59395] gi|326198487|gb|EGD55671.1| site-specific tyrosine recombinase XerC [Gordonia neofelifaecis NRRL B-59395] Length = 297 Score = 109 bits (272), Expect = 7e-22, Method: Composition-based stats. Identities = 37/269 (13%), Positives = 83/269 (30%), Gaps = 26/269 (9%) Query: 88 AVNSRISFESYFDQIIRKSGDF-----DYRKITTKHIRSGVESRKHTPSSAIQFLTSMRV 142 + ++ ++ ++ +G D + + R ++ + ++S + Sbjct: 19 SKHTVRAYTGDIRGLVAFAGARGVEVGDLDLPLLRAWLAEHARRGAARTTIARQVSSAKT 78 Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---------SEGSQPR 193 WAVR+ + +P ++ PK E + R Sbjct: 79 FCAWAVREGVLQTDPAQRLQAPKSHRVLPAVLAPEQAAAAVDGAAGDSAGDGDPVAFRDR 138 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE--------LPDGFMK- 243 + E L G+R + C + + + I+ K +V L D + Sbjct: 139 VILELLYSCGIRVGELCGLDLGDVDADRRVIRVIGKGDKQRSVPYGGPAAAALDDWLRRG 198 Query: 244 -LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGA 302 T + + +++ AG + H +R +AT + GA Sbjct: 199 RSALATAASGDALLLGVKGGRLDQRMARTVVHRATETAGQSVGPHALRHSAATHLLEGGA 258 Query: 303 TAHELMATYGWKTVDQAETYTK-GADRIR 330 + G ++ + YT +R+R Sbjct: 259 DLRVVQELLGHSSLATTQLYTHVSVERLR 287 >gi|66044755|ref|YP_234596.1| Phage integrase:Phage integrase, N-terminal SAM-like [Pseudomonas syringae pv. syringae B728a] gi|63255462|gb|AAY36558.1| Phage integrase:Phage integrase, N-terminal SAM-like [Pseudomonas syringae pv. syringae B728a] Length = 319 Score = 109 bits (272), Expect = 7e-22, Method: Composition-based stats. Identities = 44/270 (16%), Positives = 91/270 (33%), Gaps = 30/270 (11%) Query: 89 VNSRISFESYFDQIIR---KSGDFDYRKITTKHI---RSGVESRKHTPSSAIQFLTSMRV 142 +R +++ +G ++R +T H+ R+ +E R ++ + L ++ Sbjct: 39 PRTRRAYQIDLQDFCSFVGLAGAEEFRAVTRAHVLAWRARLEKRGLAGATIRRKLAALAS 98 Query: 143 LFKWAVRQE-YVAINPCLSVERPKRKTEGIRP--WTKEDMQQFKSFWSE----GSQPRLA 195 LF + NP V+RP+ ++ + + G + R Sbjct: 99 LFDHLLENNAVAGGNPVHGVKRPRIESNEGKTPALADHQAKALLDAPPADSLKGLRDRAV 158 Query: 196 FEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKT-QKTGTIITVELPDGFMKLLAM----- 247 LLY GLR + + L + I ++ K G + + L + + Sbjct: 159 LAVLLYHGLRREEGAQLKTSDLQERRGIKHLRVNGKGGKLRWLPLHPVAAERIYAYMEKD 218 Query: 248 --TPIGKETFFINNDKQ----KMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISA 298 G + F + + ++A A AG+ HG+R +AT + Sbjct: 219 LERGAGNGSLFRSLRGRASGTGLSADGIYKIVCHWAMSAGIKVDGLGVHGLRATAATNAL 278 Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADR 328 + A ++ G + Y + R Sbjct: 279 EHDADIAKVQIWLGHANISTTRLYDRRGQR 308 >gi|313123911|ref|YP_004034170.1| tyrosine recombinase xerc [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312280474|gb|ADQ61193.1| Tyrosine recombinase xerC [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 295 Score = 109 bits (272), Expect = 7e-22, Method: Composition-based stats. Identities = 41/264 (15%), Positives = 102/264 (38%), Gaps = 24/264 (9%) Query: 85 GSLAVNSRISFESYF---DQIIRKSGDFD-YRKITTKHIRSGVES--RKHTPSSAIQFLT 138 S + + ++++ + +++G F + +I+ + + + + +K S+ + L+ Sbjct: 15 RSYSPKTVLAYQKDLAAAKKFWQENGGFPGWDQISRRDLEIYLLATGQKLASSTLSRKLS 74 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG----SQPRL 194 S++ ++ R+ V +P ++++ + K + + ++++ Q ++G + R Sbjct: 75 SLKSFYRLLTRRGLVKADPTVAIQLRRGKKKLPEFFYQDEVGQVIRSLNDGKPLTVRNRA 134 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLL-----AMT 248 +G+R S+ ++ L N + K V K L A Sbjct: 135 IVALFYATGMRLSELTDLKIKQLDLENGMILVHGKGNKDRYVFFDQESKKYLEEYLQAAR 194 Query: 249 P------IGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADA 300 P E F+N + +++ + + KAG+ H +R AT + Sbjct: 195 PSLLKNEPDTEAVFLNKLGRPISSRGIAKAVQQIFQKAGLTAGAHPHELRHSFATAMLNN 254 Query: 301 GATAHELMATYGWKTVDQAETYTK 324 GA + G + + + YT Sbjct: 255 GADLRSVQELLGHEDLSTTQIYTH 278 >gi|134283292|ref|ZP_01769993.1| phage integrase [Burkholderia pseudomallei 305] gi|217424779|ref|ZP_03456276.1| phage integrase family protein [Burkholderia pseudomallei 576] gi|134245487|gb|EBA45580.1| phage integrase [Burkholderia pseudomallei 305] gi|217392235|gb|EEC32260.1| phage integrase family protein [Burkholderia pseudomallei 576] Length = 348 Score = 109 bits (272), Expect = 7e-22, Method: Composition-based stats. Identities = 49/284 (17%), Positives = 105/284 (36%), Gaps = 21/284 (7%) Query: 60 YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119 Y++ + T+ + Y + + ++ S + G + ++ + + Sbjct: 50 YLSRAPSEKLTVSAALKRYMEEVS-ITKKATTQRSERFTSQHLAAFFGKYSMAAVSAELV 108 Query: 120 RSGVESRKHTPSSAIQF---LTSMRVLFKWAVRQEY---VAINPCLSVERPKRKTEGIRP 173 + R S L + LF+ A+ QE+ + NP ++ +P R Sbjct: 109 AKYRDERLAAGKSNNTVRIELAMLGHLFRVAI-QEWGIGLTFNPVANIRKPSPGAGRDRR 167 Query: 174 WTKEDMQQFKSFWSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKT 229 T E+ Q+ + S P L + +G+R S+ + N ++K K Sbjct: 168 LTPEEQQRLFAAADAHSNPILGWIVRLAVETGMRSSEITGLHRSQVDLNRRVVTLKDTKN 227 Query: 230 GTIITVELPDGFMKLLA------MTPIGKETFFINNDKQ--KMNATQFSIWFKAKATKAG 281 G++ V L +++L + PI + F + K F + + AG Sbjct: 228 GSVRLVPLTRVAVEILRSALDNPIRPIDVDLVFFGEPGRDGKRKPYVFQKLWASIVQTAG 287 Query: 282 V-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 + + H +R + + +AG + E+ + G K++ + YT Sbjct: 288 LADLHFHDLRHEAVSRLVEAGLSDQEVASISGHKSMQMLKRYTH 331 >gi|212695321|ref|ZP_03303449.1| hypothetical protein BACDOR_04866 [Bacteroides dorei DSM 17855] gi|212662231|gb|EEB22805.1| hypothetical protein BACDOR_04866 [Bacteroides dorei DSM 17855] Length = 293 Score = 109 bits (272), Expect = 7e-22, Method: Composition-based stats. Identities = 39/265 (14%), Positives = 94/265 (35%), Gaps = 24/265 (9%) Query: 76 SEYRKSAHW-GSLAVNSRISFESYF----DQIIRKSGDFDYRKITTKHIRSGVESR---K 127 + + + + + +S+ + I K + D+ + +R V + Sbjct: 4 DSFLDYLRFERNYSEKTIVSYGIDLIKFEEYIRGKDENVDFTTVDADLVRGWVMNLIEDG 63 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 +T +S + L+S+R +++ +++ + +P L + PK K + +M + Sbjct: 64 YTSASVNRKLSSLRSFYRFLLKKGVIGEDPMLKIIGPKNKKPLPVFLKEREMDRLLDDVP 123 Query: 188 -----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGF 241 G + R+ E +G+R S+ + + IK T K + + Sbjct: 124 FKEDFTGCRDRMVLEMFYATGMRLSELIGLNDVDVDFSASLIKVTGKRNKQRLIPFGEEL 183 Query: 242 MKLL--------AMTPIGKETFFINNDKQKMNATQFSIWFKA--KATKAGVNKSAHGVRK 291 + + + P FF+ + ++M + + K + +S H +R Sbjct: 184 RRAMFVYLKIRNEVLPEKAGAFFVLKNGKRMYPGKVYLLVKRNLSKVVSLKKRSPHVLRH 243 Query: 292 FSATISADAGATAHELMATYGWKTV 316 AT + A + G ++ Sbjct: 244 TFATAMLNNEAELGAVKELLGHSSL 268 >gi|293609893|ref|ZP_06692195.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292828345|gb|EFF86708.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 304 Score = 109 bits (272), Expect = 7e-22, Method: Composition-based stats. Identities = 51/279 (18%), Positives = 97/279 (34%), Gaps = 27/279 (9%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESR---- 126 L+S + K + + ++ ++E + D R I +R + R Sbjct: 6 QLLSMWLKERKIQNQSEHTINAYERDVKSFLEFCEHKQLDLRNIEASDLREYLAQRVEQD 65 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + + SS + LTS+R KWA + +Y+ INP + ++ E + Q Sbjct: 66 QLSSSSMQRHLTSIRQFMKWAEQGKYLEINPTDDFKLKRQPRPLPGMIDIETVNQILDQP 125 Query: 187 SEG--------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV--- 235 + + E L SGLR ++ V+ + N ++ G + Sbjct: 126 MPEKPVDQQLWLRDKAMLELLYSSGLRLAELQGLTVKDVDFNRQLVRITGKGNKTRIVPF 185 Query: 236 --ELPDGFMKLLAMTPIGKETF------FINNDKQKMNATQFSIWFKAKATKAGV--NKS 285 + + + L + I K F FI+ + Q K +A +AGV + Sbjct: 186 GKKAKESLLNWLKVYKIWKGHFDQNDSVFISLRGGALTPRQIEKRVKLQAQRAGVNVDLH 245 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R A+ + + G + + YT Sbjct: 246 PHLLRHCFASHMLSSSGDLRSVQEMLGHSNLSTTQIYTH 284 >gi|302385146|ref|YP_003820968.1| integrase family protein [Clostridium saccharolyticum WM1] gi|302195774|gb|ADL03345.1| integrase family protein [Clostridium saccharolyticum WM1] Length = 335 Score = 109 bits (272), Expect = 8e-22, Method: Composition-based stats. Identities = 50/281 (17%), Positives = 97/281 (34%), Gaps = 15/281 (5%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT--- 129 +L+ Y + L+ + ++ ++ + D + R IT+ I+ ++ Sbjct: 54 YLLQMYEMNVKKDGLSEKTVKAYMGAMRNMLCVT-DKNIRHITSVDIKYYLDLYAGKGNN 112 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 + + +F W + + NP +V K + I ++++ + E Sbjct: 113 VRTVNNERRFLSAVFTWFRKHGIINANPVEAVPIKKERKPPIDYLKGVEIEKLRVACKEP 172 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDG----FMK 243 + R EFLL +G R + + Q + I KT TV L D K Sbjct: 173 -RDRALMEFLLSTGARIGEVPQIRRQDIDWNTGEILIYAHKTSDYRTVYLNDVAMVHLEK 231 Query: 244 LLAMTPIGKETFF--INNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISAD 299 L E F + ++ + K KAG+ + H RK AT Sbjct: 232 YLDSREDNSEALFAGVRAPYNTVHEDGLRLIIKRIGEKAGLKRRVYPHLFRKTMATTLRM 291 Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340 ++ G K + A+++ L ++R +S Sbjct: 292 KDCAIEDIQQILGHKDPSTTLGFYAAANQVHLRQVHNRYMS 332 >gi|255009008|ref|ZP_05281134.1| putative tyrosine recombinase [Bacteroides fragilis 3_1_12] gi|313146748|ref|ZP_07808941.1| tyrosine type site-specific recombinase [Bacteroides fragilis 3_1_12] gi|313135515|gb|EFR52875.1| tyrosine type site-specific recombinase [Bacteroides fragilis 3_1_12] Length = 379 Score = 109 bits (272), Expect = 8e-22, Method: Composition-based stats. Identities = 44/299 (14%), Positives = 104/299 (34%), Gaps = 18/299 (6%) Query: 42 TFIPAYMSALTGSTPKREYINSPRKKPTTLK-WLISEYRKSAHWGSLAVNSRISFESYFD 100 F Y++ K + +K T++ L + + + + ++ + +Y Sbjct: 68 DFFDRYVNLAFIDYSKVTDTTNKPEKEKTIRPELPAGFLEKLKQMRYSDHTIRVYTTYIG 127 Query: 101 QIIRKSGDFDYRKITTKHIRSG----VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAIN 156 + + ++I+ I + ++ + + Q + +++ ++ + E Sbjct: 128 DFQQYFAGSNLKRISPDEINAYLLHLIDKKNISSCQQNQRINAIKFYYEKVLGNER---- 183 Query: 157 PCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH 216 C V R KR+ +KE+++ F + E + + L +GLR S+ Sbjct: 184 HCYKVNRAKREKTLPDVLSKEEVKDFLTVAKEDLRFYCMYSLLYSAGLRISELLNLKPDD 243 Query: 217 LQ--NNIFSIKTQKTGT----IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFS 270 + ++ ++ K +++ + + K F + + + S Sbjct: 244 INISRSLIHVRQGKGKKDRYTLLSKPFINKLEEYRIAYQPEKW-LFEREAGVQFSESIVS 302 Query: 271 IWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 K A +AG+ K H R AT + G + G + + E Y AD Sbjct: 303 KKLKEIAHEAGITKRVYPHLFRHSFATHLIEQGTDLKIIKELLGHENIKTTEMYVHIAD 361 >gi|114762955|ref|ZP_01442385.1| Phage integrase [Pelagibaca bermudensis HTCC2601] gi|114544279|gb|EAU47287.1| Phage integrase [Roseovarius sp. HTCC2601] Length = 316 Score = 109 bits (272), Expect = 8e-22, Method: Composition-based stats. Identities = 42/312 (13%), Positives = 103/312 (33%), Gaps = 36/312 (11%) Query: 64 PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSG 122 P+ T+ + K+ L ++ ++ S+ I K GD ++ +R Sbjct: 2 PQTMTKTVTDACESWLKTCERNQLERSTLKAYRSHARVHIEPKIGDLLLGDLSRGQVRDF 61 Query: 123 VESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW---TK 176 + + + + + S+R + AV +E++ + V+ +R+ TK Sbjct: 62 MHELLDDGISQALVRKVMVSLRAVLSEAVEREWIEHDVATDVKMRRRRRSESDERVIPTK 121 Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQ------- 227 ++++ R F +++G+R S+ ++ + ++ + Sbjct: 122 DEIRLIVENAPA--SHRAMFIAAIFTGMRISELRGLTWDNVDLDRGLVHVRQRADEHCVL 179 Query: 228 -KTGTII---TVELPDGFMKLLAMTPIG-----KETFFINNDKQKMNATQFSIW-FK--- 274 K + + + LA + F N + N + FK Sbjct: 180 GKPKSRAGHRDIPMTPLVRDTLAQWQRTVPVTVQNLVFPNGAGKIQNYSNIYNRVFKPML 239 Query: 275 ---AKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRI 329 AG K H +R +A++ + G ++ G ++ + Y + Sbjct: 240 VANGIVDAAGEPKFGLHALRHAAASLFIEQGWNPKKIQTLLGHASITMTMDVYGHLFENA 299 Query: 330 RLGIKNSRRISS 341 + ++ S Sbjct: 300 EEDVSMFAKLES 311 >gi|255068446|ref|ZP_05320301.1| tyrosine recombinase XerC [Neisseria sicca ATCC 29256] gi|255047288|gb|EET42752.1| tyrosine recombinase XerC [Neisseria sicca ATCC 29256] Length = 303 Score = 109 bits (272), Expect = 8e-22, Method: Composition-based stats. Identities = 36/270 (13%), Positives = 90/270 (33%), Gaps = 21/270 (7%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIR---KSGDFDYRKITTKHIRSGVESRKH--- 128 + Y K + ++ ++ +++R K + + + + ++ Sbjct: 10 LDGYLKMLGQQGKSAHTLSAYGRDLTELVRLLTKGSSETAQDLKRRDFVAALKRLSQQGL 69 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 + + + L++ R W V+ + +P +++ + + +E++ Sbjct: 70 SERTLARKLSAWRQYCGWLVQSGMMDNDPTFNLKASRLPERLPKALPQEELNHMLDSAPA 129 Query: 189 ----GSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELP---- 238 + FE + SGLR S+ + + S+ T K + L Sbjct: 130 DDSLAVRDHALFELMYGSGLRLSEIHGLDLGDVLLDEGWVSV-TGKGRKERQIPLSGKSV 188 Query: 239 DGFMKLL--AMTPIGKETFFINNDKQKMNATQFSIWFKAKATK--AGVNKSAHGVRKFSA 294 + L + G+ F + ++ Q +A A + +G + S H +R A Sbjct: 189 EALRAYLSERVAADGETALFTGKNGTRLGQRQIQKRLQAWAVQQGSGQHISPHMMRHSYA 248 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTK 324 + + + G + + YTK Sbjct: 249 SHLLQSSRDIRAVQELLGHSNLSTTQIYTK 278 >gi|325983789|ref|YP_004296190.1| integrase family protein [Nitrosomonas sp. AL212] gi|325533308|gb|ADZ28028.1| integrase family protein [Nitrosomonas sp. AL212] Length = 316 Score = 109 bits (272), Expect = 8e-22, Method: Composition-based stats. Identities = 54/269 (20%), Positives = 98/269 (36%), Gaps = 30/269 (11%) Query: 90 NSRISFESYFDQIIRKSG---DFDYRKITTKHIRSGVES---RKHTPSSAIQFLTSMRVL 143 +R ++E+ + +G ++R +T HI + + R + S L+++ L Sbjct: 37 ATRRAYENALKDFMNFTGIQNPEEFRVVTRAHIIAWRDDLVNRSLSSMSIRHRLSALSSL 96 Query: 144 FKWAVRQEYVAINPCLSVERPKRKT-EGIRPWTKEDMQQFKSFWSEGS-----QPRLAFE 197 F++ + V NP V+RP ++ EG P + + +GS + R Sbjct: 97 FEYLCERNTVTHNPVKGVKRPAVESYEGKTPAIGDHQARELLEVPDGSSLKGKRDRAILA 156 Query: 198 FLLYSGLRCSDSCRAGVQHL---QNNIFSIK-TQKTGTIITVELPDGFMKLLA--MTPIG 251 LLY LR + CR V+ + + IK + K G V L L+ + G Sbjct: 157 TLLYHALRRDELCRLKVKDFKQERRGVPHIKISGKGGKTRYVPLHPAASGLIHDYLDAAG 216 Query: 252 KET-----FF-------INNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISAD 299 + F I ++ + + + K G AH +R +AT + D Sbjct: 217 HDHEETGALFRSVSNNRIKESQKPITPDGVYKLVQKYSEKLGFKIGAHSLRATAATNALD 276 Query: 300 AGATAHELMATYGWKTVDQAETYTKGADR 328 A ++ G + Y R Sbjct: 277 HQADIAKVQEWLGHANIATTRIYDHRRTR 305 >gi|225863775|ref|YP_002749153.1| DNA integration/recombination/invertion protein [Bacillus cereus 03BB102] gi|225788569|gb|ACO28786.1| site-specific recombinase, phage integrase family [Bacillus cereus 03BB102] Length = 368 Score = 109 bits (272), Expect = 8e-22, Method: Composition-based stats. Identities = 54/293 (18%), Positives = 103/293 (35%), Gaps = 36/293 (12%) Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVE 124 TLK + ++ + S+ +S ++S + II G K+ HI+ + Sbjct: 60 PSKITLKDYLIQWLEIKK-MSVEKSSLSRYQSNINKHIIPNIGMISLHKLNVMHIQKCYQ 118 Query: 125 SRKHTPSSAIQFLTSMRVL---FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 S ++ + L R+L AV+Q + NP PK++ I+ WT+E+++Q Sbjct: 119 SALNSGIANNTILFQHRILTAALNLAVKQNIIPRNPATLAVIPKKEKSSIQTWTEEEVKQ 178 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--------------NNIFSIKTQ 227 F S+ S+ + + + +G+R + Q + +N + Sbjct: 179 FL-LHSQESRYHIGYLLAITTGMRLGEVLGLRWQDVDFNNHTVTINQTLGHDNKIKTSAK 237 Query: 228 KTGTIITVELP----DGFMKL--------LAMTPI--GKETFFINNDKQKMNATQFSIWF 273 + T+ +P + K L + P + N + T F+ F Sbjct: 238 NNSSKRTIPIPLEVIEELKKCKLQVNKDKLRIGPAYHDLDLIICNKLGEVTTRTTFTRHF 297 Query: 274 KAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTK 324 AG+ K H R AT+ G + G + Y+ Sbjct: 298 DKVIKNAGIKKIKFHDTRHTHATLLLKQGVHPKVVSERLGHSDISLTLRVYSH 350 >gi|145637619|ref|ZP_01793275.1| tyrosine recombinase [Haemophilus influenzae PittHH] gi|145269216|gb|EDK09163.1| tyrosine recombinase [Haemophilus influenzae PittHH] Length = 325 Score = 109 bits (272), Expect = 8e-22, Method: Composition-based stats. Identities = 39/260 (15%), Positives = 88/260 (33%), Gaps = 21/260 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITT------KHIRSGVESRKHTPSSAIQFLT 138 ++ ++ +++ D I+ D T + I + + + S L+ Sbjct: 16 RQMSPHTLTNYQHQLDATIKILAQQDIHSWTQVTPSVVRFILAESKKQGLKEKSLALRLS 75 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS---FWSEGSQPRLA 195 ++R + V+Q + +NP + PK+ + E +QQ + + R Sbjct: 76 ALRRFLSFLVQQGELKVNPTTGISAPKQGKHLPKNMDGEQVQQLLANDSKEPIDIRDRAI 135 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------ELPDGFMKLLA 246 E + SGLR S+ + + + ++ G V + + Sbjct: 136 LELMYSSGLRLSELQGLDLNSINTRVREVRVIGKGNKERVVPFGRYASHAIQEWLKVRAL 195 Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATA 304 P E F++ +++ + + G+N + H +R AT +A + Sbjct: 196 FNP-KDEALFVSQLGNRISHRAIQKRLETWGIRQGLNSHLNPHKLRHSFATHMLEASSDL 254 Query: 305 HELMATYGWKTVDQAETYTK 324 + G + + YT Sbjct: 255 RAVQELLGHSNLSTTQIYTH 274 >gi|45657471|ref|YP_001557.1| putative integrase/recombinase protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|45600710|gb|AAS70194.1| putative integrase/recombinase protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 332 Score = 109 bits (272), Expect = 8e-22, Method: Composition-based stats. Identities = 50/260 (19%), Positives = 92/260 (35%), Gaps = 22/260 (8%) Query: 85 GSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGVESRKHT----PSSAIQFLT 138 + + N+ ++ + D +I IRS S + L+ Sbjct: 52 KNYSQNTINAYSIDLKFFFEFCEKEQLDIFQIEPVDIRSYFAYLAKKHEIDRRSQSRKLS 111 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS------QP 192 S+R +K +R++ V NP + PK + E + + + ++ F SE + + Sbjct: 112 SLRTFYKVLLREDLVKSNPATQLSFPKVRKEVPKNFRINETEEILEFESENASEVSEIRD 171 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT--------VELPDGFMKL 244 R E L SGLR + A + L ++ +K G V +++ Sbjct: 172 RAMIEVLYSSGLRVFELVNAKLNSLSKDLTVLKVLGKGRKERFVYFGKEAVSSLQKYLEY 231 Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGA 302 ++ E F+N +K+ + K G K+ H R AT DAGA Sbjct: 232 RNVSFPDAEEIFLNQRGKKLTTRGVRYILNERRKKMGWEKTITPHKFRHTFATDLLDAGA 291 Query: 303 TAHELMATYGWKTVDQAETY 322 + G ++ + Y Sbjct: 292 EIRAVQELLGHSSLSTTQIY 311 >gi|307289187|ref|ZP_07569143.1| tyrosine recombinase XerC [Enterococcus faecalis TX0109] gi|306499896|gb|EFM69257.1| tyrosine recombinase XerC [Enterococcus faecalis TX0109] gi|315164096|gb|EFU08113.1| tyrosine recombinase XerC [Enterococcus faecalis TX1302] Length = 299 Score = 109 bits (272), Expect = 8e-22, Method: Composition-based stats. Identities = 39/267 (14%), Positives = 95/267 (35%), Gaps = 29/267 (10%) Query: 85 GSLAVNSRISFE---SYFDQIIRKSGDFDY---RKITTKHIRSGVESRKHTPSSAIQFLT 138 + ++ +++ +F ++ SG +Y + + S + ++++ +S + + Sbjct: 18 RGYSEKTKKAYQEDIQHFFSFLKTSGSDNYLTVEHLDVRAYLSELYDQEYSRNSISRKIA 77 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRL 194 S+R +++ ++ E + NP V K++ R + +++M + + Sbjct: 78 SLRSFYQFLLKNEAIQENPFSYVHMKKKQLRLPRFFYEKEMDALFESAQGEQPLDLRNQA 137 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-ITVE------------LPDGF 241 E L +G+R S+ V + + G V L +G Sbjct: 138 LLEVLYGTGIRVSECANLTVDAVDFQASVLLVHGKGNKDRYVPFGSFAQDALKDYLENGR 197 Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQ----FSIWFKAKATKAGVNKSAHGVRKFSATIS 297 L+ F+N+ +++ T + K + A ++ H +R AT Sbjct: 198 ALLMTKYQKKHPYVFVNHHGEQITPTGIEYVLNQLIKKSSLNAEIH--PHMLRHTFATHL 255 Query: 298 ADAGATAHELMATYGWKTVDQAETYTK 324 + GA + G + + Y Sbjct: 256 LNNGADMRTVQELLGHANLSTTQIYAH 282 >gi|289579058|ref|YP_003477685.1| integrase [Thermoanaerobacter italicus Ab9] gi|289528771|gb|ADD03123.1| integrase family protein [Thermoanaerobacter italicus Ab9] Length = 291 Score = 109 bits (272), Expect = 8e-22, Method: Composition-based stats. Identities = 49/285 (17%), Positives = 102/285 (35%), Gaps = 30/285 (10%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK----ITTKHIRSGVESR-- 126 + +YR + N+ S+ S ++ +R GD ++ I + R Sbjct: 2 DWVEKYRDVLQQSGKSTNTVESYISDINEFLRWFGDTYGKEFDGRILEQDAREYRNYLLN 61 Query: 127 --KHTPSSAIQFLTSMRVLFKWAVRQEY-VAINPCLSVERPKRKTEGIRPWTKEDMQQF- 182 K PSS + + +++ ++ ++ N C + IR ++ ++ + Sbjct: 62 IIKLKPSSINRKMAALKNFNQFLIQTGTGTEANIC-GISVADIHDREIRTISRNELNRLK 120 Query: 183 KSFWSEGSQPRLAF-EFLLYSGLRCSDSCRAGVQHLQNNI---------FSIKTQKTGTI 232 ++ ++ G++ +A E L+ +G+R S+ +Q + I+ K G Sbjct: 121 RAVYASGNKRDIALIELLIGTGVRVSELVSLTIQDIHLTERNGSQNYSYIVIRNGKGGKY 180 Query: 233 ITVELP----DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAH 287 + L + LA+ P + FI + K +G+ + SAH Sbjct: 181 REIPLNSQVKKALEEYLAIRPSSSDRIFIGQRG-PLRRESVDKIIKKYCRISGIEEISAH 239 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK--GADRI 329 +R T G + G V + Y + AD+I Sbjct: 240 VLRHTFCTRLVQEGTPIPVVSKLAGHSNVQTTMDFYVRVSRADKI 284 >gi|28572470|ref|NP_789250.1| DNA recombinase [Tropheryma whipplei TW08/27] gi|28410602|emb|CAD66988.1| putative DNA recombinase [Tropheryma whipplei TW08/27] Length = 306 Score = 109 bits (272), Expect = 8e-22, Method: Composition-based stats. Identities = 40/263 (15%), Positives = 95/263 (36%), Gaps = 23/263 (8%) Query: 85 GSLAVNSRISFESYF----DQIIRKSGDFDYRKITT---KHIRSGVESRKHT-PSSAIQF 136 + ++ ++ + II + + + + +RS + S+ H S + Sbjct: 27 RGYSSHTCRAYYRDLMCFGEYIITHDSRENVKSLRDVSIQDLRSWLYSQSHKSARSIRRA 86 Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG-----SQ 191 ++S++ F+WA ++ A N ++ PK ++ +++ + Q +S + Sbjct: 87 VSSLKSFFRWAYDRKITAQNTAAALRAPKSTSQLPSVLSEKRIAQILGNFSHTVPVIQLR 146 Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAM--- 247 FE L S +R S+ + + +++ +++ K G V L + Sbjct: 147 NTAIFELLYASAIRVSELVSLDLDSIDHDLCTVRVDGKNGKQRVVLFGKPASHALDLYLN 206 Query: 248 ------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAG 301 + + F+ + +++N + H +R +AT D G Sbjct: 207 MRHTLLSDRSSKALFLGSRGRRINPRVVYRLVSELLEMPKGPRGPHVLRHSAATHMLDNG 266 Query: 302 ATAHELMATYGWKTVDQAETYTK 324 A L G ++ + YT Sbjct: 267 ADLRSLQEILGHSSLSTTQIYTH 289 >gi|120553434|ref|YP_957785.1| tyrosine recombinase XerC [Marinobacter aquaeolei VT8] gi|120323283|gb|ABM17598.1| tyrosine recombinase XerC [Marinobacter aquaeolei VT8] Length = 324 Score = 109 bits (272), Expect = 8e-22, Method: Composition-based stats. Identities = 39/257 (15%), Positives = 87/257 (33%), Gaps = 20/257 (7%) Query: 88 AVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSGVESRKH---TPSSAIQFLTSMR 141 + + ++ ++ + +G D+ +++ +R V + S + L+S+R Sbjct: 32 SPRTCEHYQRDLQRLVAWLADNGLNDWSELSAHDVRRYVARLSRDGLSGRSIARHLSSIR 91 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS---QPRLAFEF 198 +++ +R+ NP L + PK R + + Q E + FE Sbjct: 92 RFYQYLLREGLAIDNPALDIRAPKSGRRLPRVADVDQIGQLLDATPEDPLEIRDLAMFEL 151 Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------ELPDGFMKLLAMTP 249 + SGLR ++ A + L I+ G V L A+ Sbjct: 152 MYSSGLRLAELAGADLSALDLKGPEIRVLGKGNKERVLPVGRKAVAALQQWLSCRRALVT 211 Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHEL 307 G++ F++ +++ G ++ H +R A+ ++ + Sbjct: 212 EGEKALFVSQRGTRLSRRSIQSRLSRWGILHGADQRLHPHLLRHSFASHMLESSGDLRAV 271 Query: 308 MATYGWKTVDQAETYTK 324 G + + YT Sbjct: 272 QELLGHADIATTQVYTH 288 >gi|299141119|ref|ZP_07034256.1| tyrosine recombinase XerD [Prevotella oris C735] gi|298577079|gb|EFI48948.1| tyrosine recombinase XerD [Prevotella oris C735] Length = 293 Score = 109 bits (272), Expect = 8e-22, Method: Composition-based stats. Identities = 40/277 (14%), Positives = 101/277 (36%), Gaps = 28/277 (10%) Query: 74 LISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDF----DYRKITTKHIRSGVESR-- 126 +I ++ + + + + ++ + D + + +R+ +E Sbjct: 2 MIDKFLDYLRFECNRSELTVKNYGDDLRSFEKFFRDLKNPVSWESVDLDVVRNWMERMMD 61 Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF--K 183 + +S + L+++R +++A+ ++ V +P + PK+ + +++M + + Sbjct: 62 EGNNAASINRRLSALRSFYRFALSRKLVDKDPVHGITGPKKGKPLPQFLKEKEMDRLLER 121 Query: 184 SFWS---EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPD 239 +W+ E + R +G+R S+ + + + +K T K + + Sbjct: 122 EYWTRSFEDVRDRAIIMTFYETGIRLSELTGLDDKMVDFAEYQLKVTGKRNKQRIIPFGE 181 Query: 240 GFMKLL--------AMTPIGKETFFINNDKQKMNATQFSIWFK----AKATKAGVNKSAH 287 L E F+ ++ Q+M+A+ K T +S H Sbjct: 182 ELCTTLRDYMESRDREVGRLSEALFVTDEGQRMSASLVRERVKRSLSKVCTLK--KRSPH 239 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 +R AT + A + G +++ E YT Sbjct: 240 VLRHTFATAMLNHKAGIESVKKLLGHESLSTTEIYTH 276 >gi|190570559|ref|YP_001974917.1| site-specific recombinase, phage integrase family [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|190356831|emb|CAQ54200.1| site-specific recombinase, phage integrase family [Wolbachia endosymbiont of Culex quinquefasciatus Pel] Length = 306 Score = 109 bits (272), Expect = 8e-22, Method: Composition-based stats. Identities = 43/283 (15%), Positives = 90/283 (31%), Gaps = 31/283 (10%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQII--------RKSGDFDYRKITTKHIRS 121 L +I ++ + S + N+ S+ +I + K++ +RS Sbjct: 3 LGSIIEKWYDWLKYNRSYSPNTLESYMRDLKDLISFLNTHIGEEVNVGSLEKLSIPELRS 62 Query: 122 G---VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCL-SVERPKRKTEGIRPWTKE 177 +R S + L+ +R FK+ ++ Y N + S+ RP ++ + + Sbjct: 63 WFTSRYARGVNARSNTRALSVIRNFFKY-IKNNYEINNEAVFSLSRPIQRRTLPKALSIS 121 Query: 178 DMQQFKSFWSEGS--------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229 +++ + L +GLR +++ V + N I T K Sbjct: 122 NIETLLKEMKLPDLGEPWVVKREIAIVVLLYGTGLRITEALNLKVSDISNESL-IVTGKG 180 Query: 230 GTIITVELPDGFMKLLAMTPIGKETF------FINNDKQKMNATQFSIWFKAKATKAGVN 283 V + K + F F+ +K+ T + + + Sbjct: 181 DKQRQVFILPVVKKCIQKYIKACPHFDEAGHLFVGVRGKKLGRTYVANRLQKIRRFLNLP 240 Query: 284 --KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 S H R AT + G +++ + YT Sbjct: 241 EILSPHAFRHSFATHLLQEDIDIRSIQQLLGHSSLETTQVYTH 283 >gi|307944724|ref|ZP_07660062.1| integrase family protein [Roseibium sp. TrichSKD4] gi|307771938|gb|EFO31161.1| integrase family protein [Roseibium sp. TrichSKD4] Length = 210 Score = 109 bits (272), Expect = 8e-22, Method: Composition-based stats. Identities = 31/197 (15%), Positives = 67/197 (34%), Gaps = 10/197 (5%) Query: 158 CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL 217 ER + + W E + F + S + +LA L++G R D + Sbjct: 1 MDGFERAYQSDRSDKIWLPEHVDAFMAVASP--EMKLAMVLALHTGQRRGDLLLLNWNNY 58 Query: 218 QNNIFSIKTQKT------GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI 271 S+ KT G ++T++ + L P + F++ Sbjct: 59 DGERISLYQGKTRRGKPKGRLVTIKCTKALKETLDGLPKRATLILTTKTGRAFQKRYFAL 118 Query: 272 WFKAKATKAG-VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR-I 329 ++ +AG + H +R + T+ AG +++ G + K R Sbjct: 119 QWEKTCKEAGNEDLHFHDIRGTTVTMLFQAGCNLGGIVSITGHSLRRAQDILDKYLARTS 178 Query: 330 RLGIKNSRRISSVVDSD 346 + + +V++++ Sbjct: 179 TMADNAIAKFENVLETN 195 >gi|315186399|gb|EFU20159.1| integrase family protein [Spirochaeta thermophila DSM 6578] Length = 299 Score = 109 bits (272), Expect = 8e-22, Method: Composition-based stats. Identities = 49/283 (17%), Positives = 100/283 (35%), Gaps = 25/283 (8%) Query: 74 LISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGV-ESRKHT 129 L+ YR + + ++ ++ + ++ + + + R Sbjct: 8 LLRRYRTHLVAELGRSRLTEETYLPLCERFCAWLECRGLEVETVSRRTCEEFIVDERGEG 67 Query: 130 P--SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ----QFK 183 + + ++++R F++ V + NP ++ P+ R +E+++ Sbjct: 68 KETRTIAKEMSALRSFFRFLVLEGVRPDNPLEEMDAPRISRTLPRVLEEEEVEILLEAVD 127 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-------- 235 + EG + R E L GLR S++C +Q + + +K + G + Sbjct: 128 TTPPEGMRDRCLLEVLYSCGLRVSEACGLDLQDIFLSEGFVKVRGKGEKERLVPFGKEAG 187 Query: 236 -----ELPDGFMKLLAMTPIGKE-TFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGV 289 L + L A P +E F+N ++++ I K +GV+ H Sbjct: 188 HWMRRYLSEARPVLAARRPGSREQAVFLNRWGRRLSRKGAWIRLKRLVAASGVDAKLHTF 247 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 R AT GA E+ G + + YT D RL Sbjct: 248 RHTCATHLLHGGANLREVQEFLGHADISTTQIYTH-VDARRLA 289 >gi|330501235|ref|YP_004378104.1| site-specific tyrosine recombinase XerC [Pseudomonas mendocina NK-01] gi|328915521|gb|AEB56352.1| site-specific tyrosine recombinase XerC [Pseudomonas mendocina NK-01] Length = 298 Score = 109 bits (272), Expect = 8e-22, Method: Composition-based stats. Identities = 37/270 (13%), Positives = 95/270 (35%), Gaps = 20/270 (7%) Query: 75 ISEYRKS-AHWGSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIR---SGVESRK 127 + Y + ++V++ + ++ G D+ ++ T+++R + + + Sbjct: 5 LDAYLEHLRRERQVSVHTLDGYRRDLGKVLAFCEAEGLSDWAELDTRNLRRLVARLHQQG 64 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + S + L++ R L+++ +R+ +P + PKR+ R + Q Sbjct: 65 LSSRSLARLLSATRGLYQYLLREGLCRHDPATGLSPPKRERRLPRTLDADRSAQLLDGAV 124 Query: 188 E----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT-VEL----- 237 E + + E SGLR S+ + L I+ + G + + + Sbjct: 125 EDDFIARRDQAMLELFYSSGLRLSELVGLDLDGLDLPAGLIRVRGKGNKVRELPVGSLAR 184 Query: 238 --PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAK-ATKAGVNKSAHGVRKFSA 294 + ++ L + FI+ +++ + + G + H +R A Sbjct: 185 QALEQWLPLRKLANPSDGAVFISQQGRRLGPRAVQLRVHQAGVRELGQHLHPHMLRHSFA 244 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTK 324 + ++ + G + + YT Sbjct: 245 SHMLESSQDLRAVQELLGHADIATTQIYTH 274 >gi|304312423|ref|YP_003812021.1| Phage integrase [gamma proteobacterium HdN1] gi|301798156|emb|CBL46378.1| Phage integrase [gamma proteobacterium HdN1] Length = 434 Score = 109 bits (272), Expect = 8e-22, Method: Composition-based stats. Identities = 55/353 (15%), Positives = 114/353 (32%), Gaps = 42/353 (11%) Query: 10 FVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69 + +HG+ R G+ L ++ + + + + Sbjct: 54 YGVNYTDKHGRKT---RFTIGKHGTLTTDEARKAAKKRLAEIVVNDANPQQQRQKDRNEL 110 Query: 70 TLKWLISEYRKSAHWGSLAVNSRI-SFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH 128 T+ L +EY S + A ++ + + I+ G ++ + +R Sbjct: 111 TVSELFAEYFLSEQFREKAPLTQRGDQGRFGNHILPLIGRLRLSEVNAEKVRKMRREIAE 170 Query: 129 TPSS----------AIQFLTSMRVLFKWAVRQ--EYVAINPCLSVERPKRKTEGIRPWTK 176 ++ A + + ++ WA + + NPC V +G R Sbjct: 171 GKTATSTVKGGEGTARMAVRLLSAVYGWACKNVEGFAIDNPCRGV---NLGRDGERTAIL 227 Query: 177 EDMQQFKSFWSEGSQ----------PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-- 224 +D ++++ + + L +G R S+ C +++ +I Sbjct: 228 KDAEEYRRLFEALDRLTATRQVTENAADCIRLLALTGARRSEVCAIRWRNIDAERGAIVL 287 Query: 225 ------KTQKTGTIITVELPDGFMKLLAMTPIG--KETFFINNDKQKMNATQFSIWFKAK 276 +KTG T+ LP + ++A G + F IW + + Sbjct: 288 APTEHKTGRKTGAKKTILLPAPALAIVAKRERGQPDDYVFRGEQGSGHTWLNSKIWVRIR 347 Query: 277 ATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 +A + H +R AT+ A GA A +LM G + Y A+ Sbjct: 348 -REANLPDGITNHALRHSFATMLAVQGAEAAQLMKALGHAQISTTVRYINTAE 399 >gi|298694544|gb|ADI97766.1| Site-specific tyrosine recombinase [Staphylococcus aureus subsp. aureus ED133] Length = 298 Score = 109 bits (272), Expect = 8e-22, Method: Composition-based stats. Identities = 37/266 (13%), Positives = 93/266 (34%), Gaps = 22/266 (8%) Query: 85 GSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGVE---SRKHTPSSAIQFLTS 139 + + ++ S++ Q + + + R+ + S +S + +++ Sbjct: 16 RNFSEHTLKSYQDDLIQFNQFLEQEHLQLNTFEYRDARNYLSYLYSNHLKRTSVSRKIST 75 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLA 195 +R +++ + + INP + + PK++ + + +E+M+ E + + R+ Sbjct: 76 LRTFYEYWMTLDENIINPFVQLVHPKKEKYLPQFFYEEEMEALFKTVEEDTSKSLRDRVV 135 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVE--------LPDGFMKLL 245 E L +G+R S+ Q + N ++ K V + + Sbjct: 136 LELLYATGIRVSELVNIKKQDIDFYANGVTV-LGKGSKERFVPFGAYCRQSIENYLEHFK 194 Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATK-AGV-NKSAHGVRKFSATISADAGAT 303 + + +N + + + AGV H +R AT + GA Sbjct: 195 PIQSCNHDFLIVNMKGEAITERGVRYVLNDIVKRTAGVSEIHPHKLRHTFATHLLNQGAD 254 Query: 304 AHELMATYGWKTVDQAETYTKGADRI 329 + + G + YT +++ Sbjct: 255 LRTVQSLLGHVNLSTTGKYTHVSNQQ 280 >gi|148260468|ref|YP_001234595.1| phage integrase family protein [Acidiphilium cryptum JF-5] gi|146402149|gb|ABQ30676.1| phage integrase family protein [Acidiphilium cryptum JF-5] Length = 304 Score = 109 bits (272), Expect = 8e-22, Method: Composition-based stats. Identities = 45/271 (16%), Positives = 85/271 (31%), Gaps = 21/271 (7%) Query: 75 ISEYRKSA-HWGSLAVNSRISFESYFDQI-----IRKSGDFDYRKITTKHIRSGVESRKH 128 I + +S A N+ +++++ R G + + G+ + Sbjct: 7 IEAFLESMVAERGAARNTILAYQADLADFAAFCASRGHGPAEADAASVADYLGGLATAGL 66 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 + + + L+S+R ++ +R A +P PK + ++ ++ + + Sbjct: 67 SARTQARRLSSLRQFQRFLLRDGQRADDPTALTSSPKLARTLPKTISEAEVDALLTAAAA 126 Query: 189 -----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDGFM 242 G E L +G+R S+ L + ++ K G V L Sbjct: 127 MPGQAGRVAEAGLEILYATGMRISELLVLPANALSTDASALLIKGKGGRERIVPLSAAAR 186 Query: 243 KLLAMT-----PIGKETFFINND-KQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFS 293 A F M F+ K A AG++ S H +R Sbjct: 187 DAAARLREMNRKRPSRHLFPGRRMGFPMTRQAFARQLKRVAVMAGIHPARLSPHSLRHAF 246 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTK 324 AT GA L G + + YT Sbjct: 247 ATHLLARGADLRSLQTLLGHADISTTQIYTH 277 >gi|283782965|ref|YP_003373719.1| tyrosine recombinase XerD [Gardnerella vaginalis 409-05] gi|283441042|gb|ADB13508.1| tyrosine recombinase XerD [Gardnerella vaginalis 409-05] Length = 319 Score = 108 bits (271), Expect = 8e-22, Method: Composition-based stats. Identities = 37/266 (13%), Positives = 79/266 (29%), Gaps = 22/266 (8%) Query: 81 SAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSM 140 S S + + + + ++ + + + + L S+ Sbjct: 36 SKKTVSAYASDLQDYTCWLYNERKIKDITTISQLDIESYIRTLNELGLGTRTVARRLASI 95 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ-------FKSFWSEGSQPR 193 ++ + + + V+ PK+ + E++ + F S + + Sbjct: 96 HEWHRFMLAHGDIQADVSAQVKAPKQADYLPDVLSIEEVNRVIEAAGNFGSSDAISIRDT 155 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVEL------------PDG 240 EFL +G R S++ + + N +K T K V + Sbjct: 156 ALLEFLYATGARISEAVGVKFEDIDLNESVVKLTGKGSKQRLVPIGGCAVRALRNYMEKS 215 Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISA 298 +L T F+N ++ +A ++K H +R AT Sbjct: 216 RPELALKGKRELHTIFLNKRGSALSRQSAWEIVTQAGERAKLDKPLHPHTLRHSLATHLI 275 Query: 299 DAGATAHELMATYGWKTVDQAETYTK 324 GA + G +V + YT Sbjct: 276 AGGADVRTVQELLGHASVTTTQIYTH 301 >gi|212712108|ref|ZP_03320236.1| hypothetical protein PROVALCAL_03188 [Providencia alcalifaciens DSM 30120] gi|212685249|gb|EEB44777.1| hypothetical protein PROVALCAL_03188 [Providencia alcalifaciens DSM 30120] Length = 319 Score = 108 bits (271), Expect = 8e-22, Method: Composition-based stats. Identities = 43/271 (15%), Positives = 90/271 (33%), Gaps = 21/271 (7%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKH 128 L I + +L + ++ +I + +I TK I + Sbjct: 38 LHEWIDRFNNIIIHRNLKKRTLDDYQGRLKRIKNSFNNIPLHEIKTKDIADYINKIVSNG 97 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 ++A + ++ +F A+ NP ++ P+ K R ++ D Sbjct: 98 NITTARLMRSILKDMFNEAMSDGVTDSNPVIATRVPRNKIARSR-LSESDYLAIYQSAVI 156 Query: 189 GSQP--RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL-------PD 239 QP ++ + + +G R D + +++ I+ +KTGT I + L Sbjct: 157 NCQPWVSMSMDLAILTGQRSGDIRKLKWDDVRDGFLWIEQEKTGTKIAIPLNISNSIANK 216 Query: 240 GFMKLLAMTP---IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-----SAHGVRK 291 +L GKE+ ++ + F K+G++ + H +R Sbjct: 217 TLQLVLDRCKHELNGKESVLVSQRGDMLADKTIGKSFSLARDKSGLSWEGSPPTFHEIR- 275 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETY 322 A+ + G K++D Y Sbjct: 276 SLASRVYGIEKSDEFANQLLGHKSMDMTRMY 306 >gi|218533191|ref|YP_002424007.1| integrase family protein [Methylobacterium chloromethanicum CM4] gi|218533206|ref|YP_002424022.1| integrase family protein [Methylobacterium chloromethanicum CM4] gi|218525494|gb|ACK86079.1| integrase family protein [Methylobacterium chloromethanicum CM4] gi|218525509|gb|ACK86094.1| integrase family protein [Methylobacterium chloromethanicum CM4] Length = 354 Score = 108 bits (271), Expect = 8e-22, Method: Composition-based stats. Identities = 52/320 (16%), Positives = 101/320 (31%), Gaps = 20/320 (6%) Query: 17 RHGKIIY-YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75 R G + + FR+ + T AY+ L R + PR + + + Sbjct: 6 RRGDVWWVRFRRNGTHVRKSAKTTRKTEAQAYLERLLAEQAGRARGDVPRHR---FEEAV 62 Query: 76 SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP---SS 132 Y + + + S+ S + +IT + I V +RK T ++ Sbjct: 63 ERYFQE---TRVRPKTLSSYRSNSRTLAPSFNALHLDEITRRAIAEFVTARKRTGVTDTT 119 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINP--CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 + L + V+ R ++ NP + R T+ + + + S Sbjct: 120 IRRDLAFLSVICSACGRWGWLDTNPVTTFGKRGLREGRPRTRFLTQAEFDRLLAAASPSL 179 Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTIITVELPDGFMKLLAMT 248 +P A + +G+R + + + N ++ KTG+ V L D + + Sbjct: 180 RP--AITLAVETGMRREELFGLTITAIDLNRREVHLERTKTGSPRRVPLSDKAITTIKGL 237 Query: 249 ---PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATA 304 P + ++ F +A V N H +R A+ G Sbjct: 238 LDEPGRPRSSYLFCKGDGSRYCDMKKGFGGACRRAKVTNMRWHDLRHTFASWYVQRGGDL 297 Query: 305 HELMATYGWKTVDQAETYTK 324 + L G + Y Sbjct: 298 YRLSRILGHSGLQMTARYGH 317 >gi|149201080|ref|ZP_01878055.1| site-specific tyrosine recombinase XerC [Roseovarius sp. TM1035] gi|149145413|gb|EDM33439.1| site-specific tyrosine recombinase XerC [Roseovarius sp. TM1035] Length = 306 Score = 108 bits (271), Expect = 8e-22, Method: Composition-based stats. Identities = 43/253 (16%), Positives = 84/253 (33%), Gaps = 20/253 (7%) Query: 104 RKSGDFDYRKITTKHIRSGVESRKHT---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160 G +ITT +R+ + + P S + L++++ ++W +E L+ Sbjct: 48 ETQGLGALSRITTSDMRAWMAHTRGGDVGPRSLARKLSAVKSFYRWLSEREGFEPTAVLA 107 Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWS-------EGSQPRLAFEFLLYSGLRCSDSCRAG 213 + PK + + RP + E + ++ + L GLR S++ Sbjct: 108 IRSPKFQRKLPRPLSPEAASDMINTLDAQSLTPWIAARDQAVVTLLYGCGLRISEALSLT 167 Query: 214 VQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPI-------GKETFFINNDKQKMNA 266 L K G V + + +A F+ ++ Sbjct: 168 GADLPLGQVLRIIGKGGKERLVPVIEPARAAVAQYARLCPYDIPRNGPLFLGARGGALSP 227 Query: 267 TQFSIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 + + G+ +A H +R AT +AG + G ++ + YT Sbjct: 228 RLIQKVMEQARAQLGLPATATPHAMRHSFATHLLNAGGDLRAIQELLGHASLSTTQAYT- 286 Query: 325 GADRIRLGIKNSR 337 G D RL +R Sbjct: 287 GVDTARLMEVYAR 299 >gi|53714080|ref|YP_100072.1| tyrosine type site-specific recombinase [Bacteroides fragilis YCH46] gi|253567394|ref|ZP_04844843.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_2_5] gi|255009170|ref|ZP_05281296.1| tyrosine type site-specific recombinase [Bacteroides fragilis 3_1_12] gi|298483947|ref|ZP_07002117.1| tyrosine type site-specific recombinase [Bacteroides sp. D22] gi|313146917|ref|ZP_07809110.1| integrase [Bacteroides fragilis 3_1_12] gi|52216945|dbj|BAD49538.1| tyrosine type site-specific recombinase [Bacteroides fragilis YCH46] gi|251943963|gb|EES84491.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_2_5] gi|298269856|gb|EFI11447.1| tyrosine type site-specific recombinase [Bacteroides sp. D22] gi|313135684|gb|EFR53044.1| integrase [Bacteroides fragilis 3_1_12] Length = 376 Score = 108 bits (271), Expect = 8e-22, Method: Composition-based stats. Identities = 43/218 (19%), Positives = 77/218 (35%), Gaps = 21/218 (9%) Query: 127 KHTPSSA---IQFLTSMRVLFKWAVRQEYVAINP---CLSVERPKRKTEGIRPWTKEDMQ 180 K P SA + AVR + + NP E+PK T E+++ Sbjct: 154 KGKPISASTRNTYYQIFNGALNAAVRAKRILKNPFNEMEKSEKPKMPESVRSYMTIEEVR 213 Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT----QKTGTIITVE 236 + + + A+ F + GLR SD + + + + QKT I + Sbjct: 214 SLIATPMQNEGVKSAYLFSCFCGLRISDIIGLQWKDVFIDNGQYRLAVAMQKTKEPIYLP 273 Query: 237 LPDGFMKLL--AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKF 292 L + +K + + F + + K A AG++K + H R Sbjct: 274 LSNEALKWMPERGDKTADDHVF-------DLPSGINQLIKPWAKAAGISKRFTFHTARHT 326 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 AT+ GA + + G +V + Y K ++ + Sbjct: 327 FATMMLTLGADLYTVSKLLGHTSVKMTQVYAKIVNKKK 364 >gi|293371342|ref|ZP_06617779.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] gi|294645314|ref|ZP_06723030.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CC 2a] gi|294808774|ref|ZP_06767507.1| site-specific recombinase, phage integrase family [Bacteroides xylanisolvens SD CC 1b] gi|292633702|gb|EFF52257.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] gi|292639393|gb|EFF57695.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CC 2a] gi|294444071|gb|EFG12805.1| site-specific recombinase, phage integrase family [Bacteroides xylanisolvens SD CC 1b] Length = 376 Score = 108 bits (271), Expect = 8e-22, Method: Composition-based stats. Identities = 43/218 (19%), Positives = 77/218 (35%), Gaps = 21/218 (9%) Query: 127 KHTPSSA---IQFLTSMRVLFKWAVRQEYVAINP---CLSVERPKRKTEGIRPWTKEDMQ 180 K P SA + AVR + + NP E+PK T E+++ Sbjct: 154 KGKPISASTRNTYYQIFNGALNAAVRAKRILKNPFNEMEKSEKPKMPESVRSYMTIEEVR 213 Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT----QKTGTIITVE 236 + + + A+ F + GLR SD + + + + QKT I + Sbjct: 214 SLIATPMQNEGVKSAYLFSCFCGLRISDIIGLQWKDVFIDNGQYRLAVAMQKTKEPIYLP 273 Query: 237 LPDGFMKLL--AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKF 292 L + +K + + F + + K A AG++K + H R Sbjct: 274 LSNEALKWMPERGDKTADDHVF-------DLPSGINQLIKPWAKAAGISKRFTFHTARHT 326 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 AT+ GA + + G +V + Y K ++ + Sbjct: 327 FATMMLTLGADLYTVSKLLGHTSVKMTQVYAKIVNKKK 364 >gi|254884116|ref|ZP_05256826.1| tyrosine type site-specific recombinase [Bacteroides sp. 4_3_47FAA] gi|254836909|gb|EET17218.1| tyrosine type site-specific recombinase [Bacteroides sp. 4_3_47FAA] Length = 376 Score = 108 bits (271), Expect = 8e-22, Method: Composition-based stats. Identities = 43/218 (19%), Positives = 78/218 (35%), Gaps = 21/218 (9%) Query: 127 KHTPSSA---IQFLTSMRVLFKWAVRQEYVAINP---CLSVERPKRKTEGIRPWTKEDMQ 180 K P SA + AVR + + NP E+PK T E+++ Sbjct: 154 KGKPLSASTRNTYYQIFNGALNAAVRAKRILKNPFNEMEKSEKPKMPESVRSYMTIEEVR 213 Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT----QKTGTIITVE 236 + + + A+ F + GLR SD +++ + + QKT I + Sbjct: 214 SLIATPMQNEGVKSAYLFSCFCGLRISDIIGLQWKNVFIDNGQYRLAVAMQKTKEPIYLP 273 Query: 237 LPDGFMKLL--AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKF 292 L + +K + + F + + K A AG++K + H R Sbjct: 274 LSNEALKWMPERGDKTADDHVF-------DLPSGINQLIKPWAKAAGISKRFTFHTARHT 326 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 AT+ GA + + G +V + Y K ++ + Sbjct: 327 FATMMLTLGADLYTVSKLLGHTSVKMTQVYAKIVNKKK 364 >gi|170718451|ref|YP_001783668.1| site-specific tyrosine recombinase XerC [Haemophilus somnus 2336] gi|189030077|sp|B0UWL5|XERC_HAES2 RecName: Full=Tyrosine recombinase xerC gi|168826580|gb|ACA31951.1| tyrosine recombinase XerC [Haemophilus somnus 2336] Length = 295 Score = 108 bits (271), Expect = 8e-22, Method: Composition-based stats. Identities = 39/272 (14%), Positives = 94/272 (34%), Gaps = 22/272 (8%) Query: 74 LISEYRKSAH-WGSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIR---SGVESR 126 L+ +Y L+ + I+++ ++I ++++ ++++T +R + Sbjct: 4 LLQKYYNYLRIERQLSPYTLINYQRQLEKIVVILQQNDIHSWQQVTPSVVRFVLAQSRKE 63 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF---K 183 S L+++R + V Q + +N + + PK+ + E +QQ + Sbjct: 64 GLHERSLALRLSALRQFLNYLVVQGELKVNSAVGISAPKQSKYLPKNMDMEQVQQLLTNE 123 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-------- 235 S + + E + SGLR S+ + + ++ G + Sbjct: 124 SKEPIDLRDKAMMELMYSSGLRLSELQSLNLNSINIRSREVRVIGKGNKERILPFGRYAS 183 Query: 236 -ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKF 292 + L P E F++ +++ + + G+N H +R Sbjct: 184 QAIQQWLKVRLLFNP-KDEALFVSQLGNRISHRSIQKRMETWGIRQGLNGHLNPHKLRHS 242 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTK 324 AT + + + G + + YT Sbjct: 243 FATHMLENSSDLRAVQELLGHSNLSTTQIYTH 274 >gi|295694704|ref|YP_003587942.1| integrase family protein [Bacillus tusciae DSM 2912] gi|295410306|gb|ADG04798.1| integrase family protein [Bacillus tusciae DSM 2912] Length = 303 Score = 108 bits (271), Expect = 8e-22, Method: Composition-based stats. Identities = 45/275 (16%), Positives = 92/275 (33%), Gaps = 20/275 (7%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRKH 128 + E+ + AV + + + R+ D D+ + + + R+ Sbjct: 4 WHDALEEFLLTKQAEGRAVRTLKDYRKHVSAFFREHEDAWPDHHALKRAVVAHFADLREL 63 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG-IRPWTKEDMQQFKSFWS 187 + + ++ F W +R+EY+ NP ++ PKRK +G R + +++ + Sbjct: 64 SATHYNLRREYLKAFFSWCIREEYLPKNPADNI--PKRKNDGTPRNLDHDTLKRLLALPR 121 Query: 188 ----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK----TQKTGTIITVELPD 239 G + F L +G R ++ + H + T KT TV + Sbjct: 122 KDTYAGVRDYALMLFQLDTGTRPGEALQLLPDHFNLAALEVIIPSGTAKTRAARTVVVSP 181 Query: 240 GFMKLLAMTP-------IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKF 292 K + F + ++ + + GV +A+ +R Sbjct: 182 QTAKAIRRLLSVRPADWTDDVPVFASASGRRFTVHGWDQRLAKYGERLGVRLTAYMLRHS 241 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 SA + G L G ++ + Y AD Sbjct: 242 SAILFLRGGGHVFALQRQLGHTSLVMTKRYVHLAD 276 >gi|237719978|ref|ZP_04550459.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_2_4] gi|229450530|gb|EEO56321.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_2_4] Length = 376 Score = 108 bits (271), Expect = 9e-22, Method: Composition-based stats. Identities = 43/218 (19%), Positives = 78/218 (35%), Gaps = 21/218 (9%) Query: 127 KHTPSSA---IQFLTSMRVLFKWAVRQEYVAINP---CLSVERPKRKTEGIRPWTKEDMQ 180 K P SA + AVR + + NP E+PK T E+++ Sbjct: 154 KGKPLSASTRNTYYQIFNGALNAAVRAKRILKNPFNEMEKSEKPKMPESVRSYMTIEEVR 213 Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT----QKTGTIITVE 236 + + + A+ F + GLR SD +++ + + QKT I + Sbjct: 214 SLIATPMQNEGVKSAYLFSCFCGLRISDIIGLQWKNVFIDNGQYRLAVAMQKTKEPIYLP 273 Query: 237 LPDGFMKLL--AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKF 292 L + +K + + F + + K A AG++K + H R Sbjct: 274 LSNEALKWMPERGDKTADDHVF-------DLPSGINQLIKPWAKAAGISKRFTFHTARHT 326 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 AT+ GA + + G +V + Y K ++ + Sbjct: 327 FATMMLTLGADLYTVSKLLGHTSVKMTQVYAKIVNKKK 364 >gi|228926906|ref|ZP_04089972.1| DNA integration/recombination/invertion protein [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228936985|ref|ZP_04099727.1| DNA integration/recombination/invertion protein [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228822700|gb|EEM68590.1| DNA integration/recombination/invertion protein [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228832641|gb|EEM78212.1| DNA integration/recombination/invertion protein [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 368 Score = 108 bits (271), Expect = 9e-22, Method: Composition-based stats. Identities = 54/293 (18%), Positives = 104/293 (35%), Gaps = 36/293 (12%) Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVE 124 TLK + ++ + S+ +S ++S + II G K+ HI+ + Sbjct: 60 PSKITLKDYLIQWLEIKK-MSVEKSSLSRYQSNINKHIIPNIGMISLHKLNVMHIQKCYQ 118 Query: 125 SRKHTPSSAIQFLTSMRVL---FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 S ++ + L R+L AV+Q ++ NP PK++ I+ WT+E+++Q Sbjct: 119 SALNSGIANNTILFQHRILTAALNLAVKQNIISRNPATLAVIPKKEKSSIQTWTEEEVKQ 178 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--------------NNIFSIKTQ 227 F S+ S+ + + + +G+R + Q + +N + Sbjct: 179 FL-LHSQESRYHIGYLLAITTGMRLGEVLGLRWQDVDFNNHTVTINQTLGHDNKIKTSAK 237 Query: 228 KTGTIITVELP----DGFMKL--------LAMTPI--GKETFFINNDKQKMNATQFSIWF 273 + T+ +P + K L + P + N + T F+ F Sbjct: 238 NNSSKRTIPIPLEVIEELKKCKLQINKDKLRIGPAYHDLDLIVCNKLGKVTTRTTFTRHF 297 Query: 274 KAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTK 324 AG+ K H R AT+ G + G + Y+ Sbjct: 298 DKVIKNAGIKKIKFHDTRHTHATLLLKQGVHPKVVSERLGHSDISLTLRVYSH 350 >gi|217962623|ref|YP_002341195.1| site-specific recombinase, phage integrase family [Bacillus cereus AH187] gi|229142474|ref|ZP_04270973.1| Site-specific recombinase, phage integrase [Bacillus cereus BDRD-ST26] gi|217067985|gb|ACJ82235.1| site-specific recombinase, phage integrase family [Bacillus cereus AH187] gi|228640987|gb|EEK97319.1| Site-specific recombinase, phage integrase [Bacillus cereus BDRD-ST26] Length = 322 Score = 108 bits (271), Expect = 9e-22, Method: Composition-based stats. Identities = 44/284 (15%), Positives = 93/284 (32%), Gaps = 28/284 (9%) Query: 86 SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES---RKHTPSSAIQFLTSMRV 142 + + F +R+ IT H++ + R+ P++ +++++ Sbjct: 41 GFRKRTIDDYSKLFRYFMRELNIEKVEIITVAHVQMYINKLLNRELAPTTVNIRISALKS 100 Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRLAFEF 198 +FK Q Y+ NP + + + I +++ G + Sbjct: 101 VFKRLHEQGYIKSNPAVDFVKLRTDEAPIFTLNNNQIKRLFRVVDKTTYAGYRDYCTMLL 160 Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSIKTQ----KTGTIITVELPDGFMKLLAMTPIGKET 254 +L+ GLR ++ + V + + F+I K V + + L M Sbjct: 161 MLHCGLRVNEVNQLEVNDIDFDNFTIMLAGAKNKNRKTRAVPMTKKVAEELRMLIDESRE 220 Query: 255 FF-------INNDKQKMNATQFSIWFKAKATKAGVNK----SAHGVRKFSATISADAGAT 303 +F + + + ++ T AG+ K S H +R AT G + Sbjct: 221 YFGGITNVFLTQEGKVIDNDLLRKRMYRYGTLAGLLKECRPSPHSLRHTFATSFLRNGGS 280 Query: 304 AHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347 + LM G + Y RL + + V + + Sbjct: 281 VNALMRIMGHADITTTMRYV------RLNDEAVKEQYEKVAAKN 318 >gi|28493419|ref|NP_787580.1| integrase/recombinase [Tropheryma whipplei str. Twist] gi|28476460|gb|AAO44549.1| integrase/recombinase [Tropheryma whipplei str. Twist] Length = 316 Score = 108 bits (271), Expect = 9e-22, Method: Composition-based stats. Identities = 40/263 (15%), Positives = 95/263 (36%), Gaps = 23/263 (8%) Query: 85 GSLAVNSRISFESYF----DQIIRKSGDFDYRKITT---KHIRSGVESRKHT-PSSAIQF 136 + ++ ++ + II + + + + +RS + S+ H S + Sbjct: 37 RGYSSHTCRAYYRDLMCFGEYIITHDSRENVKSLRDVSIQDLRSWLYSQSHKSARSIRRA 96 Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG-----SQ 191 ++S++ F+WA ++ A N ++ PK ++ +++ + Q +S + Sbjct: 97 VSSLKSFFRWAYDRKITAQNTAAALRAPKSTSQLPSVLSEKRIAQILGNFSHTVPVIQLR 156 Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAM--- 247 FE L S +R S+ + + +++ +++ K G V L + Sbjct: 157 NTAIFELLYASAIRVSELVSLDLDSIDHDLCTVRVDGKNGKQRVVLFGKPASHALDLYLN 216 Query: 248 ------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAG 301 + + F+ + +++N + H +R +AT D G Sbjct: 217 MRHTLLSDRSSKALFLGSRGRRINPRVVYRLVSELLEMPKGPRGPHVLRHSAATHMLDNG 276 Query: 302 ATAHELMATYGWKTVDQAETYTK 324 A L G ++ + YT Sbjct: 277 ADLRSLQEILGHSSLSTTQIYTH 299 >gi|145594467|ref|YP_001158764.1| site-specific tyrosine recombinase XerD [Salinispora tropica CNB-440] gi|145303804|gb|ABP54386.1| tyrosine recombinase XerD [Salinispora tropica CNB-440] Length = 325 Score = 108 bits (271), Expect = 9e-22, Method: Composition-based stats. Identities = 58/312 (18%), Positives = 100/312 (32%), Gaps = 46/312 (14%) Query: 51 LTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK---SG 107 +T R L L E LA N+ S+ + G Sbjct: 1 MTAEAEPDPAPALRRAVRGYLDHLAVE-------RGLAANTLASYRRDLAHYLDTLASIG 53 Query: 108 DFDYRKITTKHIRSGVESRK-----HTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCL 159 D + + + + + P SSA + ++++R L ++A+R+ +P Sbjct: 54 VTDLASVAPGQVEAHLARLRVGNEGRRPLAASSAARAVSAVRGLHRFALREGLTGADPSR 113 Query: 160 SVERPKRKTEGIRPWTKEDMQQFKSF----------WSEGSQPRLAFEFLLYSGLRCSDS 209 V P R +D+ + G + R EFL +G R S++ Sbjct: 114 DVRPPAPPRRLPRALPVDDVIRLLEAVGPVSAAGGQAPLGLRDRALLEFLYGTGARISEA 173 Query: 210 CRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLL-----------AMTPIGKETFFI 257 A V L + ++ K G V + + L A G F+ Sbjct: 174 VGAAVDDLDLDAGAVLLRGKGGRNRLVPIGGYAVAALHAYLVRARPGLAAAGGGTPRVFL 233 Query: 258 NNDKQKMNATQFSIWFKAKATKAGV------NKSAHGVRKFSATISADAGATAHELMATY 311 N+ ++ + A +AG+ S H +R AT D GA + Sbjct: 234 NSRGGPLSRQGAWTILRNAARRAGLSDVGPQAVSPHTLRHSYATHLLDGGADVRVVQELL 293 Query: 312 GWKTVDQAETYT 323 G +V + YT Sbjct: 294 GHASVTTTQVYT 305 >gi|58040221|ref|YP_192185.1| integrase/recombinase XerD [Gluconobacter oxydans 621H] gi|58002635|gb|AAW61529.1| Integrase/recombinase XerD [Gluconobacter oxydans 621H] Length = 311 Score = 108 bits (271), Expect = 9e-22, Method: Composition-based stats. Identities = 45/283 (15%), Positives = 95/283 (33%), Gaps = 21/283 (7%) Query: 85 GSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMR 141 A+ +R ++ S + R + + + +A + L+ +R Sbjct: 25 RGAALKTRQAYASDLADFATHCAPLSLSEARGEEVRSYLAELSRAGLAARTAARRLSCLR 84 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP-------RL 194 +++ + + +P + P+ + RP +++++ + G + R Sbjct: 85 QFYRFLMLESVREDDPTERQQAPRITSSLPRPLDEDEIRLLLETGTRGHENERRDIVSRA 144 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLLAMT----- 248 A E L +GLR S+ + + K G V L Sbjct: 145 ALELLYTTGLRISELLALPATCVHVRGPMLLVRGKGGRERLVPLSQSARDAADQLVHFDR 204 Query: 249 PIGKETFFINND-KQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATA 304 +G F D ++ + F A A KAG++ S H +R A+ GA Sbjct: 205 DLGSPWLFPGRDPQKHLTRQGFDKILLACALKAGLDPDRVSPHVLRHSFASHLLAHGADL 264 Query: 305 HELMATYGWKTVDQAETYTKG-ADRIRLGIKNSRRISSVVDSD 346 L G + + YT+ ++R+R + ++ + Sbjct: 265 RALQMLLGHADIATTQIYTQVMSERLRQAVAAHHPLARKAGAP 307 >gi|56417058|ref|YP_154132.1| integrase/recombinase ripx [Anaplasma marginale str. St. Maries] gi|222475424|ref|YP_002563841.1| integrase/recombinase ripx (xerC) [Anaplasma marginale str. Florida] gi|56388290|gb|AAV86877.1| integrase/recombinase ripx [Anaplasma marginale str. St. Maries] gi|222419562|gb|ACM49585.1| integrase/recombinase ripx (xerC) [Anaplasma marginale str. Florida] Length = 316 Score = 108 bits (271), Expect = 9e-22, Method: Composition-based stats. Identities = 35/270 (12%), Positives = 89/270 (32%), Gaps = 32/270 (11%) Query: 85 GSLAVNSRISFESYFDQI---------IRKSGDFDYRKITTKHIRSGVESR----KHTPS 131 + N+ ++E R + +++ + RS + R K + S Sbjct: 25 RRYSPNTVAAYERDIMDFYRSVCGEPCERSVSLQEVQELRSAEFRSWLADRFKQGKQSAS 84 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----QQFKSFWS 187 +A + ++ +R F++ + + + ++ +P + + + M ++ + Sbjct: 85 NA-RAISVVRSFFRYLHHKCGMKSSVVFNISKPIVRRSLPKVLEEPQMRKVMEEPEDLHW 143 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA- 246 + L GLR S++ L+ + + K + + ++ Sbjct: 144 THRRDLAVSALLYGCGLRISEAVNIKFCDLRQDELRV-LGKGSKERVIPILPWVRCIIDE 202 Query: 247 ----------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSA 294 E F+ +++ T F+ K + G+ ++ H +R A Sbjct: 203 YVASCPHQRVHGASSTEYVFVGLRGGRLSRTYFAYRMKGLRRRIGLPETTTPHTLRHSFA 262 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTK 324 T GA + G ++ + YT Sbjct: 263 THLFLEGADIRVVQELLGHASLATTQVYTH 292 >gi|186471692|ref|YP_001863010.1| integrase family protein [Burkholderia phymatum STM815] gi|184198001|gb|ACC75964.1| integrase family protein [Burkholderia phymatum STM815] Length = 292 Score = 108 bits (271), Expect = 9e-22, Method: Composition-based stats. Identities = 40/265 (15%), Positives = 90/265 (33%), Gaps = 18/265 (6%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG----VESRKHT 129 L +L+ N++ S+ R + + IR+ E RK Sbjct: 4 LRQRMLHDMQIRNLSDNTQKSYLLQVSSFARHF-RRSPEMLGPEEIRAWLIYLREERKLA 62 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 P+S + ++R L++ +++++ + P++ + E++ F Sbjct: 63 PASLSPAIGALRFLYRVTLKRDWSDED----FPLPRKPVRLPVVLSLEEITTFFDSIPS- 117 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLLAM 247 + R +GLR S+ V + + I+ K V L +++L Sbjct: 118 LKHRTILMVAYAAGLRVSEVVHLKVTDIDSKRMVIRVNQGKNRKDRYVMLSPRLLEVLRT 177 Query: 248 ---TPIGKETFFINN-DKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAG 301 ++ F + + T + ++G+ K + H +R AT + G Sbjct: 178 YWQDAHPRDWLFPGDIPGHPITRTAVARICALARQRSGITKPVTPHSLRHAFATHLLETG 237 Query: 302 ATAHELMATYGWKTVDQAETYTKGA 326 + G +++ Y + A Sbjct: 238 TDVRRIQLLMGHRSLATTSRYLRIA 262 >gi|312973894|ref|ZP_07788065.1| phage integrase family protein [Escherichia coli 1827-70] gi|310331428|gb|EFP98684.1| phage integrase family protein [Escherichia coli 1827-70] gi|323972701|gb|EGB67903.1| phage integrase [Escherichia coli TA007] Length = 375 Score = 108 bits (271), Expect = 9e-22, Method: Composition-based stats. Identities = 41/264 (15%), Positives = 84/264 (31%), Gaps = 24/264 (9%) Query: 73 WL--ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE--SRKH 128 WL + Y+KS + + G R IT + K Sbjct: 102 WLPDLQLYKKSP---------QSELSKLNLYVRPFWGKRQLRDITAGELEQYAAGLREKL 152 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF-KSFWS 187 PS+ + L + + AVR ++ +P V K R + ++ +F + + Sbjct: 153 RPSTVNRILAILSKICSLAVRAGWITHSPMTHVRYLKENNIRYRTLSATEIPRFINAATA 212 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQKTGTIITVELPDGFMKLL 245 + + LY+G+R + C + H + + K+G T L + ++ Sbjct: 213 LQTPAADSILLALYTGMRIGEVCTLKWEYWHPDMHQLILPDTKSGHPFTCPLAPPAIAVV 272 Query: 246 AMTPI---GKETFF--INNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISAD 299 K F + ++ + + + + F A ++ H +R+ AT Sbjct: 273 QCQQDLMLSKTYIFPQLTDNARPLAYPRAT--FARICRDANIDNLRMHDLRRTFATRVLQ 330 Query: 300 AGATAHELMATYGWKTVDQAETYT 323 A ++ Y Sbjct: 331 ATGDIAIASHLLNHHSLTATRRYA 354 >gi|227431599|ref|ZP_03913636.1| site-specific recombinase XerD [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227352657|gb|EEJ42846.1| site-specific recombinase XerD [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 300 Score = 108 bits (271), Expect = 9e-22, Method: Composition-based stats. Identities = 36/277 (12%), Positives = 98/277 (35%), Gaps = 27/277 (9%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYF----DQIIRKSGDFDYRKITTKHIRSGVE---S 125 L +Y +S + + ++ + + + G + ++ T +R + Sbjct: 7 QLYHDYLESER--QYSPQTLKAYLTDIAEFKNYLHESGGFTKFGEVQTLDVRVYLNDLYE 64 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 +K ++ + ++S+R+ +++ + ++ NP S+ K + + + ++++ + Sbjct: 65 KKLARTTISRKISSLRMFYQFLIINQFAIDNPFDSISLKKHQNQLPDFFYEDELHELFDV 124 Query: 186 ---WSEGSQPRLA--FEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVE--- 236 + R A EFL +G+R ++ + L + + K V Sbjct: 125 TYNHEDHLWERNAALLEFLYATGIRVAEIAGLTLSQLDFSQRLVLIHGKGNKDRYVPFGH 184 Query: 237 ----LPDGFMKLLAMTPI---GKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AH 287 + ++ L + E F+N+ + + + ++ + H Sbjct: 185 FAENIMKEYITDLRASLTVNQEHEYVFVNHRGEPITPAGITYILNQLMQRSALTGKIHPH 244 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 +R AT + GA + G + + YT Sbjct: 245 MLRHTFATHLINRGADMRTVQELLGHVNLSTTQMYTH 281 >gi|328542142|ref|YP_004302251.1| Integrase family protein [Polymorphum gilvum SL003B-26A1] gi|326411892|gb|ADZ68955.1| Integrase family protein [Polymorphum gilvum SL003B-26A1] Length = 403 Score = 108 bits (271), Expect = 9e-22, Method: Composition-based stats. Identities = 60/375 (16%), Positives = 111/375 (29%), Gaps = 52/375 (13%) Query: 13 KERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN------SPRK 66 + R+ +G Y R R+R + TF + L + P Sbjct: 7 RVRSDNGDSYYRVRV----RVRGLPEKQKTFKRLTDAKLWAQQTEAAIRRGEVQNVVPAA 62 Query: 67 KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126 K TL +I Y+K A +++ + +Y + G + IT + I + +E Sbjct: 63 KGKTLADVIERYKK-RVLPHRAESTQRAAVTYLAYWEKALGTYGLTYITAELIEAELEKL 121 Query: 127 KH------------------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP-KRK 167 + + + ++ +L K A + NP V + Sbjct: 122 AAAGDTRRKSDEGEPAGKPKSRKTIKHYRDTLALLMKHAKAWGWATQNPMEGVTPITNIR 181 Query: 168 TEGIRPWTKEDMQQFKSFWSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQNNIFS-- 223 E R + + +L F L +G R S+ + + S Sbjct: 182 DERTRFLSDAERAVLLDACKASDNDQLFNIVVFALSTGARKSEILGLTLADVDLQRGSAI 241 Query: 224 IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF-----------SIW 272 + K G L LL E + F Sbjct: 242 FRDTKNGDTRAAPLARHLRDLLTGQVAKAEALYAALPHAPKTRWLFPRADGVLPIDIRTA 301 Query: 273 FKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 ++ KAG+ + H +R +A+ A GA+ E+ G +T+ Y L Sbjct: 302 WENARDKAGLVDFRFHDLRHSTASYLAMKGASLVEIAEVLGHRTLQMVRRYAH------L 355 Query: 332 GIKNSRRISSVVDSD 346 + + + + D Sbjct: 356 SESHVKGLVESLGED 370 >gi|298241379|ref|ZP_06965186.1| integrase family protein [Ktedonobacter racemifer DSM 44963] gi|297554433|gb|EFH88297.1| integrase family protein [Ktedonobacter racemifer DSM 44963] Length = 293 Score = 108 bits (271), Expect = 9e-22, Method: Composition-based stats. Identities = 41/271 (15%), Positives = 91/271 (33%), Gaps = 18/271 (6%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134 + ++ S N+ ++ + + F H+ ++ Sbjct: 8 VEQFLASLRARHAPANTIKAYSHDLRHFLAAAPTFLVEVTAPLIQEFLQGDGHHSVATRG 67 Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ-FKSFWSEGSQPR 193 + +++ + WA+RQE V+ NP ++ + + RP E++ + FK+ + R Sbjct: 68 RRYSTLCTFYHWAIRQELVSSNPMERLDPITQPQKEPRPLAPEEVDKIFKAISPSRLRDR 127 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVELPDG------FMK 243 F L +G+R ++ + + + K TV L + Sbjct: 128 TLFMLLYETGVRVGEALALQYSDVTLAQDDEKIRV-FGKGQRERTVMLTAAPQSIRLLRR 186 Query: 244 LLAMTPIGKETFFINNDKQ-----KMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISA 298 L + I + F + + ++ T ++ AGV + H +R A+ Sbjct: 187 HLKESHITSGSVFRGDPRYGGSPLPLDYTVVQKAWQKYCQAAGVQATIHQLRHSRASQLI 246 Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRI 329 AG + G + + Y D+ Sbjct: 247 QAGVPVTTVRKQMGHRNLQSTLRYA-EVDQA 276 >gi|239787464|emb|CAX83935.1| Tyrosine recombinase XerC subunit [uncultured bacterium] Length = 321 Score = 108 bits (271), Expect = 9e-22, Method: Composition-based stats. Identities = 47/278 (16%), Positives = 88/278 (31%), Gaps = 38/278 (13%) Query: 85 GSLAVNSRISFESYFD----QIIRKSG----DFDYRKITTKHIRSGV---ESRKHTPSSA 133 L+ N+ ++ + ++ G + R++ + +R+ + + S+ Sbjct: 19 RRLSPNTVSAYLRDLELFGRYWCQRHGGGLTEEQLRQMRPEDLRAFMGMGQREGAAKSTL 78 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG---- 189 + + S+R F++ R+ NP V PK+ R T+ED + Sbjct: 79 QRRMASVRAWFRYLEREGLAENNPAALVASPKQAQRLPRAPTEEDTARLIESLPPPGPQS 138 Query: 190 ----------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELP 238 + E L SGLR + C L ++ K G V L Sbjct: 139 PLTGWARVRLLRDGAILELLYGSGLRIGELCGLDRLDLNLRQAEVRVLGKGGKERLVPLG 198 Query: 239 D----------GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SA 286 K A P F ++N + + G+ + + Sbjct: 199 SMAIQALERYLEARKAEAPPPDHLGPVFTGRQGGRLNPREVQRLVVKLRRRLGLPEKVTP 258 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R AT AGA + G ++ + YT Sbjct: 259 HALRHAFATHLLQAGADLRSIQEMLGHASLTTTQRYTH 296 >gi|153008242|ref|YP_001369457.1| site-specific tyrosine recombinase XerD [Ochrobactrum anthropi ATCC 49188] gi|151560130|gb|ABS13628.1| tyrosine recombinase XerD [Ochrobactrum anthropi ATCC 49188] Length = 307 Score = 108 bits (271), Expect = 9e-22, Method: Composition-based stats. Identities = 39/275 (14%), Positives = 88/275 (32%), Gaps = 38/275 (13%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRKH---TPSSAIQFLTS 139 A N+ S+ + + + + HIRS +++ +S + L++ Sbjct: 18 RGAAENTLESYRRDLEAVAEALSARGVNLAEAGADHIRSAIDAMATEGFAATSQARRLSA 77 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS--------- 190 +R F++ + Y +P +V+ PK++ + + E++ + + + Sbjct: 78 LRQFFRFLYSEGYRQDDPTGTVDAPKKQKPLPKIMSVENVTKLLDRAALETSEEAEPAER 137 Query: 191 ----QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLL 245 + E L +G+R S+ V + ++ F + K V L + L Sbjct: 138 FKALRLHALIETLYATGMRVSELVGLPVGVARIDHRFLLVCGKGSKERMVPLSPKAREAL 197 Query: 246 AM-------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK---------SAHGV 289 P + ++ + + G+ S H + Sbjct: 198 QRFLALRDSLPGSDDNPWLF---PAFSESGHLARQVFARELKGLAARAGLSAAAVSPHVL 254 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 R A+ GA + G + + YT Sbjct: 255 RHAFASHLLQNGADLRTVQQLLGHADISTTQIYTH 289 >gi|218288287|ref|ZP_03492586.1| integrase family protein [Alicyclobacillus acidocaldarius LAA1] gi|218241646|gb|EED08819.1| integrase family protein [Alicyclobacillus acidocaldarius LAA1] Length = 307 Score = 108 bits (271), Expect = 9e-22, Method: Composition-based stats. Identities = 45/284 (15%), Positives = 90/284 (31%), Gaps = 21/284 (7%) Query: 68 PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE--- 124 ++ + + A + + S+ + + D + R Sbjct: 2 TQSVGDAVKAFLDDAA-LRFSPRTVRSYGQDLEAFRQWLDDRGVYDLDALSTRDVRMHAS 60 Query: 125 ---SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 ++ SS + L+ +R ++ + +V +V PKR R +E++ Sbjct: 61 DLLAKGAAKSSVARRLSCLRTFLRFCAERGWVRQVMAENVRLPKRDRRLPRYLHEEEVAA 120 Query: 182 FKSFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE 236 + R EFL +G+R S+ V L + + K G V Sbjct: 121 LIDHVGGDDFVALRDRALLEFLYATGVRVSECVNLDVGDLDLSTGFARVLGKGGRERYVI 180 Query: 237 LPDGFMKLLAM-TPIGKET-----FFINNDKQKMNATQFSIWFKAKATKAGVNKSAH--G 288 + + L P+ FIN ++ + + + +S H G Sbjct: 181 VGRRAVDALRRYLPLRDRMARCSAVFINRRGGRLTDRSVRRVLERRIQEVPGLRSIHVHG 240 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 +R AT + GA + G ++ + YT R +L Sbjct: 241 LRHSFATHMLNGGADLRSVQELLGHASLSSTQIYTHT-SREQLA 283 >gi|193214605|ref|YP_001995804.1| integrase family protein [Chloroherpeton thalassium ATCC 35110] gi|193088082|gb|ACF13357.1| integrase family protein [Chloroherpeton thalassium ATCC 35110] Length = 289 Score = 108 bits (271), Expect = 9e-22, Method: Composition-based stats. Identities = 46/269 (17%), Positives = 100/269 (37%), Gaps = 20/269 (7%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI----RSGVESRKHT 129 ++ Y+ + N++ + SYF G+ + K+TTK I ++S+ + Sbjct: 13 VLRRYKNLLIQKRYSQNTQDIYCSYFKDFCMYFGEEELEKLTTKQINSYILDLIKSKNIS 72 Query: 130 PSSAIQFLTSMRVLFK--WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 S Q + +++ F+ ++Y + RP+++ + + +K +++ Sbjct: 73 ISQQNQRINAVKFYFEKVLGREKQYYE------LHRPRKENKLPKVLSKNEVKSILVSTD 126 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK-TGTIITVELPDGFMKLLA 246 + + + +GLR S+ + + I G + L + L Sbjct: 127 -NIKHKCILMLIYSAGLRRSELLNLKPTDIDSGRMLIHILGAKGKKDRISLLSENLLKLL 185 Query: 247 MT----PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300 K+ F D K + T + K + KAG++K + H +R AT + Sbjct: 186 RQYYKEFHPKKYLFEGLDGGKYSPTSVANILKKASLKAGIHKNVTPHMLRHSFATHLLEQ 245 Query: 301 GATAHELMATYGWKTVDQAETYTKGADRI 329 G + G ++ E YT + + Sbjct: 246 GTDLRYIQELLGHESSKTTEIYTHVSKKA 274 >gi|319897879|ref|YP_004136076.1| site-specific tyrosine recombinase [Haemophilus influenzae F3031] gi|329122492|ref|ZP_08251077.1| site-specific tyrosine recombinase XerC [Haemophilus aegyptius ATCC 11116] gi|317433385|emb|CBY81765.1| site-specific tyrosine recombinase [Haemophilus influenzae F3031] gi|327473182|gb|EGF18604.1| site-specific tyrosine recombinase XerC [Haemophilus aegyptius ATCC 11116] Length = 299 Score = 108 bits (271), Expect = 9e-22, Method: Composition-based stats. Identities = 39/260 (15%), Positives = 88/260 (33%), Gaps = 21/260 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITT------KHIRSGVESRKHTPSSAIQFLT 138 ++ ++ +++ D I+ D T + I + + + S L+ Sbjct: 16 RQMSPHTITNYQHQLDATIKILAQQDIHAWTQVTPSVVRFILAESKKQGLKEKSLALRLS 75 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS---FWSEGSQPRLA 195 ++R + V+Q + +NP + PK+ + E +QQ + + R Sbjct: 76 ALRRFLSFLVQQGELKVNPATGISAPKQGKHLPKNMDGEQVQQLLANDSKEPIDIRDRAI 135 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------ELPDGFMKLLA 246 E + SGLR S+ + + + ++ G V + + Sbjct: 136 LELMYSSGLRLSELQGLDLNSINTRVREVRVIGKGNKERVVPFGRYASHAIQEWLKVRAL 195 Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATA 304 P E F++ +++ + + G+N + H +R AT +A + Sbjct: 196 FNP-KDEALFVSQLGNRISHRAIQKRLETWGIRQGLNSHLNPHKLRHSFATHMLEASSDL 254 Query: 305 HELMATYGWKTVDQAETYTK 324 + G + + YT Sbjct: 255 RAVQELLGHSNLSTTQIYTH 274 >gi|297242750|ref|ZP_06926688.1| site-specific recombinase XerD [Gardnerella vaginalis AMD] gi|296888961|gb|EFH27695.1| site-specific recombinase XerD [Gardnerella vaginalis AMD] Length = 319 Score = 108 bits (271), Expect = 9e-22, Method: Composition-based stats. Identities = 37/266 (13%), Positives = 80/266 (30%), Gaps = 22/266 (8%) Query: 81 SAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSM 140 S S + + + + ++ + + + + L S+ Sbjct: 36 SKKTVSAYASDLQDYTCWLYDERKIKDITTISQLDIESYIRTLNELGLGTRTVARRLASI 95 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ-------FKSFWSEGSQPR 193 ++ + + + V+ PK+ + E++ + F S + + Sbjct: 96 HEWHRFMLAHGDIQADVSAQVKAPKQADYLPDVLSIEEVNRVIEAAGNFGSSDAISIRDT 155 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVEL------------PDG 240 EFL +G R S++ + + N +K T K V + Sbjct: 156 ALLEFLYATGARISEAVGVKFEDIDLNESVVKLTGKGSKQRLVPIGGCAVRALRNYMEKS 215 Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISA 298 +L + T F+N ++ +A ++K H +R AT Sbjct: 216 RPELASKGKRELHTIFLNKRGNALSRQSAWAIVTQAGERAKLDKPLHPHTLRHSLATHLI 275 Query: 299 DAGATAHELMATYGWKTVDQAETYTK 324 GA + G +V + YT Sbjct: 276 AGGADVRTVQELLGHASVTTTQIYTH 301 >gi|307692277|ref|ZP_07634514.1| Phage integrase [Ruminococcaceae bacterium D16] Length = 385 Score = 108 bits (271), Expect = 9e-22, Method: Composition-based stats. Identities = 55/292 (18%), Positives = 97/292 (33%), Gaps = 38/292 (13%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESR--- 126 L + + + S+ ++ + Y ++ + GD KIT + ++ Sbjct: 71 LSQWLDRWLEEYAAPSVRPSTLDGYRRYIERNLKPYLGDKPVGKITREDVQKLYRELQRN 130 Query: 127 -----------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175 K + SS + + AVR+ +A NP + PK+KT + Sbjct: 131 GRQEYHPEYGHKLSGSSIRRIHGVLHQAMDAAVRENLIARNPTEGITLPKKKTTPKQILN 190 Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-------- 227 +++F + F L +GLR + C ++ + Sbjct: 191 DAQLERFMDVIQKDEVWHEFFYTELTTGLRRGEICGLMWSDFDAAHGTLTVRRTMHVQKG 250 Query: 228 --------KTGT-IITVELPDGFMKLLAMTPIGKET--FFIN--NDKQKMNATQFSIWFK 274 KTG T+ LP ++LLA + F N +Q +N K Sbjct: 251 GGLAAGETKTGAGKRTITLPPSTVELLAQRKKQSYSQWIFPNPLRPEQPVNPNAAYDHLK 310 Query: 275 AKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTK 324 +AG+ H +R AT + +G A L G +TYT Sbjct: 311 KLLQQAGLPSIRFHDLRHTFATHALASGVDAKTLSGILGHTQASFTLDTYTH 362 >gi|170747111|ref|YP_001753371.1| integrase family protein [Methylobacterium radiotolerans JCM 2831] gi|170653633|gb|ACB22688.1| integrase family protein [Methylobacterium radiotolerans JCM 2831] Length = 291 Score = 108 bits (271), Expect = 9e-22, Method: Composition-based stats. Identities = 50/268 (18%), Positives = 86/268 (32%), Gaps = 27/268 (10%) Query: 90 NSRISFESYFDQIIR---KSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKW 146 R + Y + R GD D + + +E+R SSA + L+ +R K+ Sbjct: 15 AYRRDLDDYLGYLARSGTALGDVDAGTL--RAFLIDLETRGLKASSAARRLSCVRGFHKF 72 Query: 147 AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW--------SEGSQPRLA--- 195 + +P ++V P+R + + ++ + + G R Sbjct: 73 LYAEGGAESDPSVAVSGPRRGRALPKVLSIAEVDRLLATAQAAAGADQPPGPARRARRMV 132 Query: 196 --FEFLLYSGLRCSDSCRAGVQH-LQNNIFSIKTQKTGTIITVELPDGFMK----LLAMT 248 E L +GLR S+ + I K G V L + L Sbjct: 133 CLLELLYATGLRVSELVALPRTAGASRERYLIVRGKGGRERLVPLTEAARAAMAAHLPAV 192 Query: 249 PIGKETFF-INNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATA 304 P F ++D + F+ K A AG++ S H +R A+ GA Sbjct: 193 PEDSPWLFPADSDSGYLTRQAFARDLKVLAAAAGLHPDRVSPHVLRHAFASHLLQNGADL 252 Query: 305 HELMATYGWKTVDQAETYTKGADRIRLG 332 + G + + YT D Sbjct: 253 RIVQELLGHADISTTQIYTHVLDERLKA 280 >gi|152975083|ref|YP_001374600.1| phage integrase family protein [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152023835|gb|ABS21605.1| phage integrase family protein [Bacillus cytotoxicus NVH 391-98] Length = 304 Score = 108 bits (271), Expect = 9e-22, Method: Composition-based stats. Identities = 49/278 (17%), Positives = 98/278 (35%), Gaps = 29/278 (10%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSGV----ESRK 127 + E+ +L+ ++ S++ + G FD K+T+K + + K Sbjct: 7 MQEFLDDRELRNLSKHTLKSYKGILKRFESFCVNKGIFDTDKVTSKVAKEFLIYCKHELK 66 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----QQFK 183 ++ S+ + +++V FK+ + V NP ++ K T T E + + F Sbjct: 67 NSISTINEKNRTLKVYFKYLEEEGIVEENPFKKIKFSKEDTI-TDVLTDEQVKSVLEHFD 125 Query: 184 SFWSEGS-----QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVEL 237 +G+ + R+ L+ +GLR + + N + K T+ T+ Sbjct: 126 RGHYKGTNFALMRNRMVIVLLISTGLRREELVNLKWSDIDMRNRTIMTYGKKRTVATIPY 185 Query: 238 PDGFMKLLAMTPIGKE----------TFFINNDKQKMNATQFSIWFKAKATKAGVNK-SA 286 K LA E F + +++ S FK + + Sbjct: 186 TRKLQKELAEYKTFLEFYFEEEKEVVYVFPDKWNRQLTTEAISTLFKRLKKNLNMEGLTC 245 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H R++ A+ G + L +T+ E Y K Sbjct: 246 HAFRRYFASKCLKMGMDSLNLQKLMRHETLQMTERYVK 283 >gi|256845727|ref|ZP_05551185.1| DNA integration/recombination/invertion protein [Fusobacterium sp. 3_1_36A2] gi|256719286|gb|EEU32841.1| DNA integration/recombination/invertion protein [Fusobacterium sp. 3_1_36A2] Length = 405 Score = 108 bits (271), Expect = 9e-22, Method: Composition-based stats. Identities = 60/393 (15%), Positives = 119/393 (30%), Gaps = 78/393 (19%) Query: 10 FVTKERTRHGKIIY----YFRKGHGRRIRLPYPHEST-----------FIPAYMSALTGS 54 + T + GK + Y +K R+ L +S F+ M L Sbjct: 2 YTTSYTRKKGKYYHVVFEYVKKKGTRKKSLSRTTKSEDKEVADSMLDDFVTECMRILNID 61 Query: 55 TPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ------------- 101 + + I+ Y K + + Sbjct: 62 KKYKPKNRNEII----FNKDINLYNKEISFCDFIYGYIKMRRKTIEDDTYSGYESIARCS 117 Query: 102 IIRKS--GDFDYRKITTKHIRSG----VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAI 155 +I + ++I I + R +P++ + + + ++FK+A+R + ++I Sbjct: 118 LIPYFYRENKKLKEIEDFDIEKYYYHELNYRNISPNTVLHYHYLLSLVFKYALRHKIISI 177 Query: 156 NPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS-EGSQPRLAFEFLLYSGLRCSDSCRAGV 214 NP SVE+PK+K + E++ E Y GLR S+ Sbjct: 178 NPLDSVEKPKKKKYVAEVYNAEEINILLDLLKREEESIYFGVLMAAYFGLRRSEVIGLKW 237 Query: 215 Q------------------HLQNNIFSIKTQKTGTI-------ITVELPDGFMKLLAMTP 249 ++ + KT + + +E+ + +K+ Sbjct: 238 SSINFEENTITIMSTVKETNIDGKHILVCQDKTKSPAGLRSFSLPIEIKELLLKIKEKQE 297 Query: 250 I------------GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATI 296 KE ++++ +++ + F K + H +R ATI Sbjct: 298 ENKKYLGKCYYMEDKEYIYVDDGGKRLRPNYLTTRFGKFLKKFNLKHIRFHDLRHSCATI 357 Query: 297 SADAGATAHELMATYGWKTVDQA-ETYTKGADR 328 D A E+ G +V E Y +R Sbjct: 358 LYDNNAGIKEIQTYLGHSSVKTTMEIYVHLMNR 390 >gi|186471361|ref|YP_001862679.1| integrase family protein [Burkholderia phymatum STM815] gi|186474500|ref|YP_001863471.1| integrase family protein [Burkholderia phymatum STM815] gi|186474622|ref|YP_001863593.1| integrase family protein [Burkholderia phymatum STM815] gi|184197670|gb|ACC75633.1| integrase family protein [Burkholderia phymatum STM815] gi|184198459|gb|ACC76421.1| integrase family protein [Burkholderia phymatum STM815] gi|184198581|gb|ACC76543.1| integrase family protein [Burkholderia phymatum STM815] Length = 292 Score = 108 bits (271), Expect = 9e-22, Method: Composition-based stats. Identities = 42/265 (15%), Positives = 87/265 (32%), Gaps = 18/265 (6%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG----VESRKHT 129 L +LA N++ S+ R + + IR+ E RK Sbjct: 4 LRQRMLHDMQIRNLAENTQKSYLIQVSSFARHF-RRSPELLGPEEIRAWLIYLREERKLA 62 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 P+S + ++R L++ +++++ + P++ + E++ F Sbjct: 63 PASLSPAIGALRFLYRVTLKRDWSDED----FPLPRKPVRLPVVLSLEEITTFFDSIPS- 117 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLLAM 247 + R +GLR S+ V + + I+ K V L +++L Sbjct: 118 LKHRTILMVAYAAGLRVSEVVHLKVTDIDSKRMVIRVNQGKNRKDRYVMLSPRLLEILRT 177 Query: 248 ----TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAG 301 F + + S + G+ K + H +R AT +AG Sbjct: 178 YWQDAHPRGWLFPGDIPGHPITRGAVSRICALARQRCGIRKPITPHSLRHAFATHLLEAG 237 Query: 302 ATAHELMATYGWKTVDQAETYTKGA 326 + G +++ Y + A Sbjct: 238 TDVRRIQLLMGHRSLATTSRYLRIA 262 >gi|116625160|ref|YP_827316.1| phage integrase family protein [Candidatus Solibacter usitatus Ellin6076] gi|116228322|gb|ABJ87031.1| phage integrase family protein [Candidatus Solibacter usitatus Ellin6076] Length = 301 Score = 108 bits (271), Expect = 9e-22, Method: Composition-based stats. Identities = 41/268 (15%), Positives = 90/268 (33%), Gaps = 23/268 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG----VESRKHTPSSAIQFLTSM 140 + + + + + ++ +HIR V+ RK P + + ++++ Sbjct: 22 RNYSQATARPYVGAIQRFAEHF-HRSPDQLGPEHIREYQLHLVQDRKLHPRTVMIQMSAL 80 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKR-KTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFL 199 R F+ +++ + + + PK + + +++++ + + + + R L Sbjct: 81 RFFFRKVLKRRFDRDD----LPLPKLLRRQIPTVLSRDEVARLIA-AAGNLRHRTILMAL 135 Query: 200 LYSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTIITVELPDGFMK----LLAMTPIGKE 253 +G+R ++ C ++ + I+ K G V LP + P Sbjct: 136 YATGMRRAELCHLRIEDIDKERMVLHIRQGKGGKDREVPLPPKLLAQLRIHYRALPHRSA 195 Query: 254 TFFINNDKQ----KMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHEL 307 F + + M + A +AG+ KS H +R AT D GA + Sbjct: 196 WVFPSLQSRRPDQPMTEKAVWHACRQAAWRAGITKSVHPHTLRHCFATHLLDNGAELPVI 255 Query: 308 MATYGWKTVDQAETYTKGADRIRLGIKN 335 G Y R N Sbjct: 256 QVLLGHSDPRDTMIYLHLCTRQLRAAPN 283 >gi|310768311|gb|ADP13261.1| site-specific tyrosine recombinase XerC [Erwinia sp. Ejp617] Length = 351 Score = 108 bits (271), Expect = 9e-22, Method: Composition-based stats. Identities = 48/305 (15%), Positives = 103/305 (33%), Gaps = 33/305 (10%) Query: 54 STPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFE---SYFDQIIRKSGDFD 110 P I+ R TL+ L + + + + G Sbjct: 5 KPPTATEIHISRHG-QTLRQLAESWLSHLAAAGRSPRTVQGYRERVRALLAWCEPRGITY 63 Query: 111 YRKITTKHIRSGVE-----SRKHTPSSA----IQFLTSMRVLFKWAVRQEYVAINPCLSV 161 +++ + S R A L+++R+L +W +++ ++ NP + Sbjct: 64 APQVSLAVLESYQRWLQGYRRADGRQLAVNGQRHLLSAIRMLLRWLLQRHHILYNPAELL 123 Query: 162 ERPKRKTEGI-RPWTKED----MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH 216 E PK + + +++ + +Q + G + R E L SG+R S+ + Sbjct: 124 ELPKEERRLPAQVFSEAETRRVLQSLDAGTPPGLRNRAILELLWSSGIRRSELAGLLLSD 183 Query: 217 LQ--NNIFSIKTQKTGTIITVEL----PDGFMKLLA------MTPIGKETFFINNDKQKM 264 + + +++ K G V + + L FI++ + Sbjct: 184 VDFTRGVVNVRRGKGGKDRVVPVGHAALMWLGRYLQDVRPRLAQRFDSGHLFISHKGTGL 243 Query: 265 NATQFSIWF-KAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAET 321 + +A + A + K+ H R AT + GA + A G + ++ + Sbjct: 244 AHGTLTAMAGRAIRSGAHLKKAGACHIFRHSMATQMLENGADTRHIQAILGHEKLETTQI 303 Query: 322 YTKGA 326 YT+ A Sbjct: 304 YTRVA 308 >gi|257451607|ref|ZP_05616906.1| integrase/recombinase, phage integrase family protein [Fusobacterium sp. 3_1_5R] Length = 346 Score = 108 bits (271), Expect = 9e-22, Method: Composition-based stats. Identities = 46/315 (14%), Positives = 111/315 (35%), Gaps = 23/315 (7%) Query: 46 AYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK 105 + AL+ ++ T ++L ++ +L+ NS ++ ++ Sbjct: 35 QFSLALSKYNLVKKGKYEVVVSENTNEFLWKKFFIGKRIENLSENSLKVYKDNLERF-DS 93 Query: 106 SGDFDYRKITTKHIRSGVESRKHTPSSA-----IQFLTSMRVLFKWAVRQEYVAINPCLS 160 ++ +TT+ +R + + SS ++ F++ V + + NP Sbjct: 94 VIKKNFLDVTTEDVRFYIATVISKNSSVKETYLDNIRRFLKTFFQFLVDEGLIKTNPVTR 153 Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN 220 ++ + T P++ ++++ ++ S + E L+ + R + + + Sbjct: 154 IKPIRGNTSEKLPFSNMEIEKLRNACSS-CLEKAVIEILISTAFRRQELAEIKLSDIDFE 212 Query: 221 IFSIKTQKTGTIITVELPD-----GFMKLLAMTPIGKETFFINND---------KQKMNA 266 SI+T G + + ++ + K F + +A Sbjct: 213 KGSIRTIGKGKKLGYGFLNAKALLALIEYIEKERESKSVFLFIRGKNKRFREKAGEPYDA 272 Query: 267 TQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 + K KAGV H R+ +AT + D G ++ + + YT Sbjct: 273 SSLYALIKKIGKKAGVTHVHPHRFRRTAATKALDRGLGLEDVKELLRHEDIKTTLIYT-T 331 Query: 326 ADRIRLGIKNSRRIS 340 ++ RL K++R + Sbjct: 332 LNKDRLKDKHNRFLD 346 >gi|27497173|gb|AAN64203.1| Int [Photorhabdus luminescens] Length = 465 Score = 108 bits (271), Expect = 1e-21, Method: Composition-based stats. Identities = 48/317 (15%), Positives = 108/317 (34%), Gaps = 38/317 (11%) Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI---IRKSGDF---DYRKITTKHIRSG 122 TL+ ++ + ++ L+ ++ S+E G + + Sbjct: 142 ATLRQHLAAWLEAVQGQGLSERTQESYEERLLPFVTWCEARGVMTAPQVSLPLLESYQRW 201 Query: 123 VESRKHT------PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI-RPWT 175 + S + T P S L+ +R F+W +++ ++ NP S+ PK + + Sbjct: 202 LRSYRKTNGQPYSPGSQRDRLSVLRQWFRWLLQRHHILYNPVDSLVLPKEEKRLPAQVMN 261 Query: 176 KEDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKT 229 +++ + + G + R+ E L +G+R + + + + ++ K Sbjct: 262 EDETHTVLAAANIDTLTGLRNRVILEVLWSTGIRRMEVANLLLSEVDFGRGVVLVRQGKG 321 Query: 230 GTIITVELPD----GFMKLLAMTP-----IGKETFFINNDKQKMNATQFSIW----FKAK 276 V + + + L++ P FI + + + + + Sbjct: 322 NKDRVVPIGEQALHWLSRWLSVRPQLTRRGDSGHLFITRKGRGLARGTLTQIAADSIRKQ 381 Query: 277 ATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-----DRIRL 331 A A + H R AT + GA + A G + ++ + YT+ A Sbjct: 382 AQLAK-PGACHLFRHSMATQMLENGADTRHIQAILGHEKLETTQIYTRVAIGHLKKVHEQ 440 Query: 332 GIKNSRRISSVVDSDDP 348 R+ SD+P Sbjct: 441 THPAERKPEQKTPSDNP 457 >gi|240170588|ref|ZP_04749247.1| site-specific tyrosine recombinase XerC [Mycobacterium kansasii ATCC 12478] Length = 302 Score = 108 bits (271), Expect = 1e-21, Method: Composition-based stats. Identities = 43/291 (14%), Positives = 97/291 (33%), Gaps = 28/291 (9%) Query: 68 PTTLKWLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVE 124 P ++ E+ + ++R ++ + D ++ +R+ + Sbjct: 2 PDKHDAILEEFDDYLALQCGRSAHTRRAYLGDLRLLFAFLADRGSALETLSLPLLRAWLA 61 Query: 125 SRKHT---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 S ++ + ++++ WAVR+ + +P ++ PK ++ Sbjct: 62 SASGAGVARTTLARRTSAVKAFTAWAVRRGLLTGDPAARLQVPKAHRTLPAVLRQDQALA 121 Query: 182 FKSFWSEGS--------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTI 232 + G+ + RL E L +G+R S+ C + + ++ K Sbjct: 122 AMTAAKSGAEQGDPLALRDRLIVELLYATGIRVSELCGLDIDDVDTGHRVVRVLGKGNKQ 181 Query: 233 ITVELPDGFMKLLAM----------TPIGKETFFINNDKQKMNATQFSIWFKA--KATKA 280 TV + L T + ++++A Q A Sbjct: 182 RTVPYGRPAAEALQAWLADGRPALVTAESGPALLLGARGRRLDARQARTVVHQTVAAVNG 241 Query: 281 GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIR 330 + HG+R +AT + GA + G ++ + YT A +R+R Sbjct: 242 APDIGPHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTHVAVNRLR 292 >gi|224543618|ref|ZP_03684157.1| hypothetical protein CATMIT_02828 [Catenibacterium mitsuokai DSM 15897] gi|224523444|gb|EEF92549.1| hypothetical protein CATMIT_02828 [Catenibacterium mitsuokai DSM 15897] Length = 340 Score = 108 bits (271), Expect = 1e-21, Method: Composition-based stats. Identities = 37/280 (13%), Positives = 95/280 (33%), Gaps = 17/280 (6%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH----T 129 LI ++ S + + ++S + ++ D + +TT H+R+ + + + Sbjct: 65 LIDKFIASKEIEGCSKRTTQYYKSTLVMLENRT-DIHFTHMTTDHLRTYLTDYQKINNCS 123 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 S ++ F W + Y+ +P + + K + E ++ + Sbjct: 124 KVSIDNIRRNLSSFFSWLEEENYILKSPMKRIHKIKTDKVIKETLSDESLECLRDSCD-N 182 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDG----FMKL 244 + + L +G+R + ++ + N + K V Sbjct: 183 LRDLAIIDLLASTGMRVGELVNINIEDIDFENRECVVFGKGNKERPVYFDARTKIHLKNY 242 Query: 245 LAMTPIGKETFFINNDKQKMNA---TQFSIWFKAKATKAGVNK-SAHGVRKFSATISADA 300 L F++ D + N + I + + G+++ H R+ AT + D Sbjct: 243 LKSRTDDNPALFVSLD-KPFNRLQISGVEIRLRNLGRRLGIHRVHPHKFRRTVATRAIDK 301 Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340 G ++ + G +D Y ++ + + + ++ Sbjct: 302 GMPIEQVQSLLGHSQIDTTMHYA-MVNQNNVKESHRKFVA 340 >gi|229103030|ref|ZP_04233719.1| DNA integration/recombination/invertion protein [Bacillus cereus Rock3-28] gi|228680445|gb|EEL34633.1| DNA integration/recombination/invertion protein [Bacillus cereus Rock3-28] Length = 368 Score = 108 bits (271), Expect = 1e-21, Method: Composition-based stats. Identities = 46/292 (15%), Positives = 92/292 (31%), Gaps = 35/292 (11%) Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESY-FDQIIRKSGDFDYRKITTKHIRSGVE 124 TLK + E+ K + ++ +E +I G + K+ I+ Sbjct: 60 PSKVTLKDYLLEWLKVKE-MEVDKSTYAGYECIVLKHLIPALGKNTFNKLNVIQIQQFYR 118 Query: 125 SRKHTPSSAIQFL--TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 + S++ L + A+ Q + NP +PK++ I+ WT+E+++ F Sbjct: 119 NLTGKLSNSRIILIHRVLNTALNQAIAQNLITTNPAKFAAKPKKERTSIQTWTEEEVKTF 178 Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--------------NNIFSIKTQK 228 S+ S+ F + +G+R + Q + +N + Sbjct: 179 L-LHSQNSRYHTGFILAITTGMRLGEVLGLRWQDVDFDNHTVTINQTLGHDNKIKQSAKT 237 Query: 229 TGTIITVELP----DGFMKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFK 274 + + T+ +P + + K F + F + Sbjct: 238 SSSKRTLPIPIETINALKEHHLFIKKEKLRFGNAYNDSNLIVCTMSGNIVYRDYFRKSYY 297 Query: 275 AKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324 KA V K H +R AT+ G + G + Y+ Sbjct: 298 TIIQKANVPKIKFHDLRHTHATLLLKQGVHPKIVSERLGHSNISMTLSVYSH 349 >gi|291457690|ref|ZP_06597080.1| tyrosine recombinase [Bifidobacterium breve DSM 20213] gi|291380743|gb|EFE88261.1| tyrosine recombinase [Bifidobacterium breve DSM 20213] Length = 339 Score = 108 bits (271), Expect = 1e-21, Method: Composition-based stats. Identities = 49/305 (16%), Positives = 93/305 (30%), Gaps = 65/305 (21%) Query: 85 GSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIRSGV--ESRKHTPSSAIQFLTS 139 L+ N+ ++ + + G +IT +RS + ES H SS + + Sbjct: 18 RGLSANTLKAYRCDIEACLHLFELRGVVSLNEITLNDLRSWMATESHNHARSSMARKTVA 77 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW------------- 186 +R F W V +NP ++ P T+ +Q Sbjct: 78 VRGFFAWGYEHGVVGVNPAATLMTPSIPNTLPTVLTESQAEQLLDCAEHSEALQRKNRDI 137 Query: 187 -----------------------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS 223 +E + E L +G+R ++ ++ + + + Sbjct: 138 SNDSSADGPHSARGRSADRAREIAERQRDVAILELLYATGIRVAELVSLDIRDVDFSNRT 197 Query: 224 IKTQKTGTIITV-------------------ELPDGFMKLLAMTPIG----KETFFINND 260 ++ G V A+ P G + F+ Sbjct: 198 VRVTGKGNKQRVVPFGLPAEQALQDWIDYGRPALARLAIEKAVPPNGISSDEGALFLGMR 257 Query: 261 KQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319 +++N A +AGV + S H +R +AT D GA E+ G ++ Sbjct: 258 GKRLNQRVAREIVHKAAREAGVPDISPHALRHSAATHMLDGGADLREVQEMLGHSSLKTT 317 Query: 320 ETYTK 324 + YT Sbjct: 318 QRYTH 322 >gi|254453365|ref|ZP_05066802.1| phage integrase [Octadecabacter antarcticus 238] gi|198267771|gb|EDY92041.1| phage integrase [Octadecabacter antarcticus 238] Length = 385 Score = 108 bits (271), Expect = 1e-21, Method: Composition-based stats. Identities = 45/288 (15%), Positives = 89/288 (30%), Gaps = 14/288 (4%) Query: 51 LTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI-IRKSGDF 109 L G P + + + ++ L +Y + + S D++ + + G Sbjct: 84 LRGGDPVADAVTARTAP--SIADLAEQYYEIHALPKKRKKGAANDRSMLDRLVLPRLGKQ 141 Query: 110 DYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169 ++ + I++ S K TP A + L+ + +F+ ++ NP VE+ + Sbjct: 142 KVLEVCHRDIQTFHNSLKATPYQANRVLSLLSKMFELSISWGMRGENPAKGVEKFHEEKR 201 Query: 170 GIRPWTKEDMQQFKSFWSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT- 226 R + +++ + + + A L +G R + A + Sbjct: 202 -HRWLSSDELSRLGAALDRHRNQKAANAIRLQLLTGARIGEVLSAQWADFDLDRGVWVKP 260 Query: 227 ---QKTGTIITVELPDGFMKLL----AMTPIGKETFFINNDKQKMNATQFSIWFKAKATK 279 K + L + LL G F K K W A Sbjct: 261 SHHTKQKRTEHLPLAKAAVALLEKVHEAQRSGSNFVFPGRSKIKPLVDLKKFWRSLIADA 320 Query: 280 AGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 V+ H R A+ +G + + G + Y AD Sbjct: 321 DIVDYRIHDNRHTHASQLVSSGMSLAIVGRLLGHTNPMTTQRYAHIAD 368 >gi|329851121|ref|ZP_08265878.1| tyrosine recombinase xerD [Asticcacaulis biprosthecum C19] gi|328839967|gb|EGF89539.1| tyrosine recombinase xerD [Asticcacaulis biprosthecum C19] Length = 315 Score = 108 bits (271), Expect = 1e-21, Method: Composition-based stats. Identities = 38/278 (13%), Positives = 91/278 (32%), Gaps = 27/278 (9%) Query: 85 GSLAVNSRISFESYFDQIIRK-----SGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139 + A + ++ D ++ G + R SS + ++ Sbjct: 30 RNAARPTLDAYGRDLDDLMATCKVTPQGLLGLSDGDLAGYFQDLSERGLASSSLQRKRSA 89 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA---- 195 +R +++ V + +P + K+ + + +++++ + + + Sbjct: 90 VRQFYRFCVAENLTGHDPSRKIAAAKKGLKLPKILSRDEVDALIAAADAIAPNQAVRLEC 149 Query: 196 -FEFLLYSGLRCSDSCRAGVQHL-QNNIFSIKTQKTGTIITVELPDGFMKLLA------- 246 E SG+R S+ + + ++ I K G V L + Sbjct: 150 LIEMAYASGMRISELVGLKLDAVARDPACLIIKGKGGVERLVPLNPSARAAIKEYLDIRY 209 Query: 247 -MTPIGKET--FFINNDKQ--KMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISA 298 P G + + ++ + + + A AG++ S H +R AT Sbjct: 210 TFLPAGDKANPYLFSSRGKEGHLTRRRVGQLLDQAAINAGIDPARVSPHVLRHAFATHLL 269 Query: 299 DAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKN 335 + GA + G + + YT A +R+R ++ Sbjct: 270 EGGADLRVVQTLLGHADISTTQIYTHVAGERLREVVET 307 >gi|237725482|ref|ZP_04555963.1| integrase [Bacteroides sp. D4] gi|229436169|gb|EEO46246.1| integrase [Bacteroides dorei 5_1_36/D4] Length = 383 Score = 108 bits (271), Expect = 1e-21, Method: Composition-based stats. Identities = 66/368 (17%), Positives = 120/368 (32%), Gaps = 53/368 (14%) Query: 18 HGKIIYY---FRKGHGRRIRLPYPHESTFIPAYMS------ALTGSTPKREYINSPRKKP 68 +G Y +R G L PA + AL I + Sbjct: 23 NGNKSIYLDIYRNGKRTYEFLKLYIVPEIDPASRAMNQHNMALANKIKADRIIELTNSEK 82 Query: 69 T----------TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS----GDFDYRKI 114 L L+ Y A W L N + S + I + + GD R + Sbjct: 83 GVSNATLRGRIKLSELLDLY---ARW--LEDNGKKSSIRGVNSIRKATFQFRGDVPIRML 137 Query: 115 TT----------KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV--- 161 ++ +R + ++A ++T + + WAVR +Y++ NP + Sbjct: 138 DKDYCMAFMNFLRNDYKARTNRTISMTTATGYVTVLSAMLNWAVRNDYLSENPFTHIAAA 197 Query: 162 ERPKRKTEGIRPWTKEDMQQFKS-FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN 220 +R R +++++ + + AF F Y LR SD + + Sbjct: 198 DRIHRPESKREFLQIDELKKLIATECPTRPAVKQAFLFSCYCALRISDVIGLTWGDIHKD 257 Query: 221 IFSIKT----QKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAK 276 + +KT I + L MK L K+ + + ++ I Sbjct: 258 GDQWRVFTVMEKTNDPIYLPLSKQAMKWLPERGDAKD---EDKVFDLPSESRICIILDKW 314 Query: 277 ATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIK 334 A AG+NK + H R AT+ + G K + + Y K D+ + + Sbjct: 315 AKAAGINKHVTYHVSRHTFATMMLTLDVDIYTTSKLLGHKNISTTQIYAKIIDQKK--DE 372 Query: 335 NSRRISSV 342 R++ + Sbjct: 373 AVNRVNDI 380 >gi|34222780|sp|Q48733|XERC_LACLE RecName: Full=Tyrosine recombinase xerC gi|1359910|emb|CAA59018.1| xerC recombinase [Lactobacillus leichmannii] Length = 295 Score = 108 bits (271), Expect = 1e-21, Method: Composition-based stats. Identities = 40/264 (15%), Positives = 101/264 (38%), Gaps = 24/264 (9%) Query: 85 GSLAVNSRISFESYF---DQIIRKSGDFD-YRKITTKHIRSGVES--RKHTPSSAIQFLT 138 S + + ++++ + +++G F + +I+ + + + + +K S+ + L+ Sbjct: 15 RSYSPKTVLAYQKDLAAAKKFWQENGGFPGWDQISRRDLEIYLLATGQKLASSTLSRKLS 74 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG----SQPRL 194 S++ ++ R+ V +P ++++ + K + + ++++ Q ++G + R Sbjct: 75 SLKSFYRLLTRRGLVKADPTVAIQLRRGKKKLPEFFYQDEVGQVIRSLNDGKPLTVRNRA 134 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLLA-----MT 248 +G+R S+ ++ L N + K V K L Sbjct: 135 IVALFYATGMRLSELTDLKIKQLDLENGMILVHGKGNKDRYVFFDQESKKYLEEYLQVAR 194 Query: 249 P------IGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADA 300 P E F+N + +++ + + KAG+ H +R AT + Sbjct: 195 PSLLKNEPDTEAVFLNKLGRPISSRGIAKAVQQIFQKAGLTAGAHPHELRHSFATAMLNN 254 Query: 301 GATAHELMATYGWKTVDQAETYTK 324 GA + G + + + YT Sbjct: 255 GADLRSVQELLGHEDLSTTQIYTH 278 >gi|323937177|gb|EGB33457.1| phage integrase [Escherichia coli E1520] Length = 375 Score = 108 bits (271), Expect = 1e-21, Method: Composition-based stats. Identities = 41/264 (15%), Positives = 84/264 (31%), Gaps = 24/264 (9%) Query: 73 WL--ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE--SRKH 128 WL + Y+KS + + G R IT + K Sbjct: 102 WLPDLQLYKKSP---------QSELSKLNLYVRPFWGKRQLRDITAGELEQYAAGLREKL 152 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF-KSFWS 187 PS+ + L + + AVR ++ +P V K R + ++ +F + + Sbjct: 153 RPSTVNRILAILSKICSLAVRAGWITHSPMSHVRYLKENNIRYRTLSATEIPRFINAATA 212 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQKTGTIITVELPDGFMKLL 245 + + LY+G+R + C + H + + K+G T L + ++ Sbjct: 213 LQTPAADSILLALYTGMRIGEVCTLKWEYWHPDMHQLILPDTKSGHPFTCPLAPPAIAVV 272 Query: 246 AMTPI---GKETFF--INNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISAD 299 K F + ++ + + + + F A ++ H +R+ AT Sbjct: 273 QCQQDLMLSKTYIFPQLTDNARPLAYPRAT--FARICRDANIDNLRMHDLRRTFATRVLQ 330 Query: 300 AGATAHELMATYGWKTVDQAETYT 323 A ++ Y Sbjct: 331 ATGDIAIASHLLNHHSLTATRRYA 354 >gi|256850237|ref|ZP_05555666.1| integrase-recombinase [Lactobacillus crispatus MV-1A-US] gi|262046371|ref|ZP_06019333.1| integrase [Lactobacillus crispatus MV-3A-US] gi|256712874|gb|EEU27866.1| integrase-recombinase [Lactobacillus crispatus MV-1A-US] gi|260573242|gb|EEX29800.1| integrase [Lactobacillus crispatus MV-3A-US] Length = 270 Score = 108 bits (271), Expect = 1e-21, Method: Composition-based stats. Identities = 40/235 (17%), Positives = 87/235 (37%), Gaps = 17/235 (7%) Query: 107 GDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166 G R+ + + RK SS ++ ++S+ +++ R++ VAI+P + + Sbjct: 16 GWTKVRERDIQVYLQHLAERKLARSSQLRKMSSLHSFYRFLTRRKLVAIDPTKGITLRRG 75 Query: 167 KTEGIRPWTKEDMQQFKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222 + + + + + +++Q + FE +G+R S+ + L ++ Sbjct: 76 EKKLPQFFYQPELKQVFDSLKGNKPLTMRNLAMFELFYATGMRVSEVSNLTLNQLDLDLQ 135 Query: 223 SIKTQKTGTI-ITVELPDGFMKLL-----AMTP-----IGKETFFINNDKQKMNATQFSI 271 +I G V D K L P ++ F+NN + + Sbjct: 136 TILVHGKGNKDRYVAFDDKTKKSLIAYLENARPLLLKNDDEQHVFLNNQGTGITSRGIET 195 Query: 272 WFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 + +AG++ H +R AT + GA + G ++ + YT Sbjct: 196 VMQKTFNQAGISGKVHPHELRHSFATAMLNNGADLRSVQELLGHSSLSATQIYTH 250 >gi|298253373|ref|ZP_06977165.1| site-specific recombinase XerD [Gardnerella vaginalis 5-1] gi|297532768|gb|EFH71654.1| site-specific recombinase XerD [Gardnerella vaginalis 5-1] Length = 319 Score = 108 bits (271), Expect = 1e-21, Method: Composition-based stats. Identities = 37/266 (13%), Positives = 79/266 (29%), Gaps = 22/266 (8%) Query: 81 SAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSM 140 S S + + + + ++ + + + + L S+ Sbjct: 36 SKKTVSAYASDLQDYTCWLYDERKIKDIATISQLDIESYIRTLNELGLGTRTVARRLASI 95 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ-------FKSFWSEGSQPR 193 ++ + + + V+ PK+ + E++ + F S + + Sbjct: 96 HEWHRFMLAHGDIQADVSAQVKAPKQADYLPDVLSIEEVNRVIEAAGNFGSSDAISIRDT 155 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVEL------------PDG 240 EFL +G R S++ + + N +K T K V + Sbjct: 156 ALLEFLYATGARISEAVGVKFEDIDLNESVVKLTGKGSKQRLVPIGGCAVRALRNYMEKS 215 Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISA 298 +L T F+N ++ +A ++K H +R AT Sbjct: 216 RPELALKGKRELHTIFLNKRGNALSRQSAWAIVTQAGERAKLDKPLHPHTLRHSLATHLI 275 Query: 299 DAGATAHELMATYGWKTVDQAETYTK 324 GA + G +V + YT Sbjct: 276 AGGADVRTVQELLGHASVTTTQIYTH 301 >gi|258423907|ref|ZP_05686792.1| tyrosine recombinase XerC [Staphylococcus aureus A9635] gi|257845936|gb|EEV69965.1| tyrosine recombinase XerC [Staphylococcus aureus A9635] Length = 298 Score = 108 bits (271), Expect = 1e-21, Method: Composition-based stats. Identities = 37/266 (13%), Positives = 93/266 (34%), Gaps = 22/266 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRK-----ITTKHIRSGVESRKHTPSSAIQFLTS 139 + + ++ S++ Q + + ++ S + S +S + +++ Sbjct: 16 RNFSEHTLKSYQDDLIQFNQFLEQEHLQLNTFEYKDARNYLSYLYSNHLKRTSVSRKIST 75 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLA 195 +R +++ + + INP + + PK++ + + +E+M+ E + + R+ Sbjct: 76 LRTFYEYWMTLDENIINPFVQLVHPKKEKYLPQFFYEEEMEALFKTVEEDTSKSLRDRVI 135 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVE--------LPDGFMKLL 245 E L +G+R S+ Q + N ++ K V + + Sbjct: 136 LELLYATGIRVSELVNIKKQDIDFYANGVTV-LGKGSKERFVPFGAYCRQSIENYLEHFK 194 Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATK-AGV-NKSAHGVRKFSATISADAGAT 303 + + +N + + + AGV H +R AT + GA Sbjct: 195 PIQSCNHDFLIVNMKGEAITERGVRYVLNDIVKRTAGVSEIHPHKLRHTFATHLLNQGAD 254 Query: 304 AHELMATYGWKTVDQAETYTKGADRI 329 + + G + YT +++ Sbjct: 255 LRTVQSLLGHVNLSTTGKYTHVSNQQ 280 >gi|9635596|ref|NP_061531.1| integrase [Pseudomonas phage D3] gi|6166382|gb|AAF04808.1| integrase [Pseudomonas phage D3] gi|9885346|gb|AAG01406.1| integrase [Integration vector pVH-2] Length = 369 Score = 108 bits (271), Expect = 1e-21, Method: Composition-based stats. Identities = 57/360 (15%), Positives = 115/360 (31%), Gaps = 34/360 (9%) Query: 16 TRHGKIIYY--FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK----KPT 69 R+ ++ F+ G+ +R S+ Y +A +R ++ P Sbjct: 4 KRNDSAYWWISFKSATGKLVR-----RSSGTADYSAAKALEQQERAKAWKEKEMGVNPPR 58 Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129 T + +I Y + A + + + + D + + + Sbjct: 59 TFEEVIIPYLQHARQHQRSYETTVHRIKPLREYFAGRVVNDLGGQDIRGYGAHRLDAGAS 118 Query: 130 PSSAIQFLTSMRVLFKWA-VRQEYVAINPCLSVERPKRKTEGIRPW-TKEDMQQFKSFW- 186 P++ + L ++ E+ NP + R+ EG W T+ +++ Sbjct: 119 PATINRELAALSAAINHCNTELEWALPNPVKGRKM--REAEGRDRWLTRAEVEALCRAAR 176 Query: 187 --SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQ--KTGTIITVELPDG 240 G + +G R + + + N + ++ K G ++ + +G Sbjct: 177 GQKFGPMLEDFIRLAVNTGCRREEMLGLEWRRVDFANRLIYLEASHTKAGKRRSIPINEG 236 Query: 241 FMKLLAM-----TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSA 294 M L + E ++ S FK A + + + H +R A Sbjct: 237 AMAALKRRMAFRSETSPECPWVFARANGDRVISLSAGFKQACQAAKIADFTIHDLRHTCA 296 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKNSR-----RISSVVDSDDP 348 AG ++ G TV E Y A R+R + RIS V +D+P Sbjct: 297 AWLVSAGVPLADVRDLLGHSTVAMTERYAHLAPARVRDAVGVLDQVREGRISRSVHADNP 356 >gi|307718588|ref|YP_003874120.1| DNA integration/recombination/invertion protein [Spirochaeta thermophila DSM 6192] gi|306532313|gb|ADN01847.1| DNA integration/recombination/invertion protein [Spirochaeta thermophila DSM 6192] Length = 299 Score = 108 bits (271), Expect = 1e-21, Method: Composition-based stats. Identities = 49/283 (17%), Positives = 100/283 (35%), Gaps = 25/283 (8%) Query: 74 LISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGV-ESRKHT 129 L+ YR + + ++ ++ + ++ + + + R Sbjct: 8 LLRRYRTHLVAELGRSRLTEETYLPLCERFCAWLECRGLEVGTVSRRTCEEFIVDERGEG 67 Query: 130 P--SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ----QFK 183 + + ++++R F++ V + NP ++ P+ R +E+++ Sbjct: 68 KETRTIAKEMSALRSFFRFLVLEGVRPDNPLEEMDAPRISRTLPRVLEEEEVEILLEAVD 127 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-------- 235 + EG + R E L GLR S++C +Q + + +K + G + Sbjct: 128 TAPPEGMRDRCLLEVLYSCGLRVSEACGLDLQDIFLSEGFVKVRGKGEKERLVPFGKEAG 187 Query: 236 -----ELPDGFMKLLAMTPIGKE-TFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGV 289 L + L A P +E F+N ++++ I K +GV+ H Sbjct: 188 HWMRRYLSEARPVLAARRPGSREQAVFLNRWGRRLSRKGAWIRLKRLVAASGVDAKLHTF 247 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 R AT GA E+ G + + YT D RL Sbjct: 248 RHTCATHLLHGGANLREVQEFLGHADISTTQIYTH-VDARRLA 289 >gi|253578208|ref|ZP_04855480.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251850526|gb|EES78484.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 317 Score = 108 bits (271), Expect = 1e-21, Method: Composition-based stats. Identities = 33/285 (11%), Positives = 88/285 (30%), Gaps = 26/285 (9%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129 L+ + Y + + L + ++ +Q + K + + + +K+ Sbjct: 15 LQDKLVSYLEYCTYRKELDQKTVKAYRIDLNQYFTFVACEEPDKEKIEEYITELH-KKYK 73 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE-RPKRKTEGIRPWTKEDMQQFKSF--- 185 + + + S++ + + E + +P ++ + K R +E+++ + Sbjct: 74 QKTVKRKIASVKAYYSYLEENELIKESPFRKIKVKFKENLILPRIIPREEIEHLLNHMYG 133 Query: 186 ---------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI---- 232 + + E +G R + +++ N I+ G Sbjct: 134 CLQQASETVYKYCLRDVAVIELFFATGARVYEISNIRAENVNLNTGLIQLMGKGAKERYV 193 Query: 233 -----ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--S 285 + + + FF+N + + K +AG+ + + Sbjct: 194 QIGSTSVLNILRKYYAENRAAIKKSGYFFVNGRGNRYTEQSIRLMLKKYTAQAGIERNIT 253 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 H R AT + G + G ++ + Y A R + Sbjct: 254 PHMFRHSFATYLIEEGVDISCVQRILGHSSIKTTQIYIHVAARKQ 298 >gi|146297702|ref|YP_001181473.1| phage integrase family protein [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145411278|gb|ABP68282.1| phage integrase family protein [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 327 Score = 108 bits (271), Expect = 1e-21, Method: Composition-based stats. Identities = 54/308 (17%), Positives = 100/308 (32%), Gaps = 51/308 (16%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTP- 130 WL Y+K +L ++ +ES + I+ G + + + +H+++ S+ + Sbjct: 10 WLWE-YKK----QTLRPSTFQDYESLINNHIVPSIGHYKLKDLRPEHLQALYNSKHESGL 64 Query: 131 --SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE-GIRPWTKEDMQQFKSFWS 187 S+ + A++ V N + PK KT+ IR T E+ ++F + Sbjct: 65 SLSTIKHIHVILHSALDQALKNGLVVRNVSEATTLPKAKTKKEIRVLTLEEQKRFVAAL- 123 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQ------------------ 227 EG + + AF L SG+R + +L+ +IK Sbjct: 124 EGERLKPAFLLALASGVRLGELLALKWDCVNLKEGTITIKRSLRRIKTYDKSLPTKTMLA 183 Query: 228 ----KTGTII-TVELPD----GFMKLLAMTPIGK----------ETFFINNDKQKMNATQ 268 KT I T+ +P + K F + Sbjct: 184 FQEPKTAAGIRTIPVPPVILEELKEHRKRQLEEKLKAGSLYEDNNLVFATELGTPIEPRN 243 Query: 269 FSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGAD 327 F F KA ++ + H +R AT +A + G + Y+ Sbjct: 244 FLRVFYRIIEKANLDINFHALRHTYATRLLEANEHPKVVQELLGHNDISTTLNIYSHVMP 303 Query: 328 RIRLGIKN 335 I+ Sbjct: 304 EIKKAAAM 311 >gi|168698681|ref|ZP_02730958.1| phage integrase family protein [Gemmata obscuriglobus UQM 2246] Length = 303 Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats. Identities = 48/275 (17%), Positives = 90/275 (32%), Gaps = 25/275 (9%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD-----FDYRKITTKHIRSGVESR 126 L + + + + A +R +F + + F ++T + + E Sbjct: 19 AALFTTFLDAHDF---ASGTRKAFTLDIKKFAVWFAEVNREPFRVGRVTMRDVTDFREHL 75 Query: 127 KHTPSSA----IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 + A + L ++R F W Q +VA NP + V+ +R + ++ +++ Sbjct: 76 RREKGQAVSTVNRALVAVRRYFGWLAEQGHVASNPAVGVKELRRVQLAPKGLQRDQVRKL 135 Query: 183 KSFWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVE 236 R F LLY+G R D +Q L ++ + K G +V Sbjct: 136 LREVELRQDVRASAVFHLLLYTGCRIGDLVNLKLQDLMLTERSGTVVFRLGKGGKQRSVP 195 Query: 237 LPDGFMKLLAM-----TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRK 291 LP K + P+ ++ FI + + GV H R Sbjct: 196 LPLPARKSIQAYLDTRPPVKEQIVFIGERG-PLTDRGVRAMCDKYSALIGVKLHPHLFRH 254 Query: 292 FSA-TISADAGATAHELMATYGWKTVDQAETYTKG 325 A AD L G + ++ Y + Sbjct: 255 TMAHQFLADNENDLVALAQLLGHENLNTTARYARR 289 >gi|331271115|ref|YP_004385824.1| site specific tyrosine recombinase XerC [Clostridium botulinum BKT015925] gi|329127610|gb|AEB77552.1| site specific tyrosine recombinase XerC [Clostridium botulinum BKT015925] Length = 334 Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats. Identities = 38/221 (17%), Positives = 86/221 (38%), Gaps = 20/221 (9%) Query: 126 RKHTPSSAIQFLTSMRVLFKWAV-RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 R ++ ++ + +++++ FK+ + + + N +E+PK + T E+ ++ S Sbjct: 98 RNNSSNTRARKVSTLKAFFKYLYGKIKVLDYNIAEELEKPKLEKRNPIYLTLEESRKLLS 157 Query: 185 FWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242 ++ R L GLR S+ C + ++ + ++ K TV L M Sbjct: 158 VIDGKNKERDYCILNIFLNCGLRISELCSIQISKIKEDTLTVI-GKGNKERTVYLNKACM 216 Query: 243 KLL------------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAH 287 + + K+ F+N + ++ K KAG++ + H Sbjct: 217 DSITDYLKVRNSCKARVPLEDKDILFLNKNYGHISKRSVEKLVKKYVEKAGLDTTKYTPH 276 Query: 288 GVRKFSATISAD-AGATAHELMATYGWKTVDQAETYTKGAD 327 +R +AT+ G +L G +++ + YT + Sbjct: 277 KLRHTAATLMFKYGGVDIRKLQLILGHESISTTQIYTHVDN 317 >gi|254293147|ref|YP_003059170.1| integrase family protein [Hirschia baltica ATCC 49814] gi|254041678|gb|ACT58473.1| integrase family protein [Hirschia baltica ATCC 49814] Length = 308 Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats. Identities = 46/292 (15%), Positives = 94/292 (32%), Gaps = 33/292 (11%) Query: 85 GSLAVNSRISFESYF----DQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSM 140 + N+ ++ + + K G ++SR S+A + L+S+ Sbjct: 21 RGASQNTLDAYRRDLSDASEFLADKGGLVGANSENLSAYMRDLDSRGMAKSTAARRLSSL 80 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRLAF 196 + FK+ + + +P ++ P+ +KE++ + + R Sbjct: 81 KSFFKFELEEGEREDDPTSRLDGPQIIRNIPDVLSKEEVVALINAADGDEPSDIRDRCIL 140 Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFS--IKTQKTGTIITVELPDGFMKLLAMTPIGKET 254 E L +GLR S++C + L + I K L L +E Sbjct: 141 ELLYSAGLRASEACELPMSSLPRGKDTALIIRGKGDKDRLTPLGKPARDALEQWFSVREK 200 Query: 255 FFINNDKQK---------------MNATQFSIWFKAKATKAGV---NKSAHGVRKFSATI 296 F N+ +K + + + ATKA + + H +R AT Sbjct: 201 FLPKNETRKIADKYVFPSRGKTGHFTRRRLAQILENLATKAAISPKRVTPHALRHAFATH 260 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348 GA + G + + YT + + + + + +P Sbjct: 261 LLSGGADLRAVQMLLGHADISTTQIYTHV-----MTDELQKLLEAAHPLSNP 307 >gi|261368880|ref|ZP_05981763.1| site-specific recombinase, phage integrase family [Subdoligranulum variabile DSM 15176] gi|282568975|gb|EFB74510.1| site-specific recombinase, phage integrase family [Subdoligranulum variabile DSM 15176] Length = 391 Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats. Identities = 52/333 (15%), Positives = 104/333 (31%), Gaps = 47/333 (14%) Query: 57 KREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITT 116 + + P TL + + LA ++ + +I+ G + + Sbjct: 59 EVRHDPQPVNHAMTLAAYTEHWLRDIAPDKLAASTYSRDQQDIRRILPALGHYKLTDLRK 118 Query: 117 KHIRSGVESRKHTP----------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166 + IR+ E+ + P S ++ + AV + Y+ NP V +PK Sbjct: 119 ETIRAFYEAMRSEPKLTDGQPLSERSVEGLHNTLCSILSGAVDEGYLTHNPAWRVYKPKG 178 Query: 167 KTEGIRPWTKEDMQQFKSFWSEGSQPR-LAFEFLLYSGLRCSDSCRAGVQHLQ------- 218 + +E +Q+ + S + F+ +L +G+R ++C + Sbjct: 179 VRKERPVADEETVQKMIAALETQSMKYEVYFKLVLATGMRRGEACGLRWSDIDWRHRTIH 238 Query: 219 ---------NNIFSIKTQKTGTI-ITVELPDGFMKLLAMTP---------------IGKE 253 K KT + V + KLL ++ Sbjct: 239 VQRTVVKLSGQKIFTKEPKTASGNRRVYISKEMCKLLKAWKQECAWQMEQAEGQTLTEED 298 Query: 254 TFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATY 311 F M T F+ FK + G+ N S H +R +A++ G + Sbjct: 299 YLFRQPSGDPMVPTTFTFRFKKILKENGLPQNLSVHSLRHTNASLLIAQGVDVRTVAGLL 358 Query: 312 GWKTVDQA-ETYTKGADR-IRLGIKNSRRISSV 342 G + Y D+ R + ++ + Sbjct: 359 GHSQPSTTLDIYAHAFDKTKREAQEKLGKVMRL 391 >gi|226945661|ref|YP_002800734.1| phage integrase [Azotobacter vinelandii DJ] gi|226720588|gb|ACO79759.1| Phage integrase [Azotobacter vinelandii DJ] Length = 400 Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats. Identities = 62/328 (18%), Positives = 109/328 (33%), Gaps = 28/328 (8%) Query: 44 IPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-I 102 + A +K T+K + + + +++ + D+ I Sbjct: 73 MAQEWLAEVRRGGDPSAAKVAARKAPTMKEYCTTFMEDYSKQRNKPSTQRGYRGVIDRNI 132 Query: 103 IRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVA--INPCLS 160 I G + + + + ++ H P+ A + +R +F A NPC Sbjct: 133 IPILGRMKVQDVKRPDVAALMKKLAHKPAEANRTFGVLRKMFNLAEVWGLRPDGTNPCRH 192 Query: 161 VERPKRKTEGIRPWTKEDMQQFKSF----------WSEGSQPRLAFEFLLYSGLRCSDSC 210 V E E ++ F+ + RL FEF R S+ C Sbjct: 193 VPMFPPGKETRLIVDDELVRIFRHLEHMEAEGLENYVIPLAIRLQFEFA----ARRSEIC 248 Query: 211 RAGVQHLQNN--IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFI----NNDKQKM 264 + KTG I+ + + +LL+ P + ++ N+ + + Sbjct: 249 PLEWDWVDLEKRRVVWPDSKTGG-ISKPMSEEAYRLLSRAPRREGCPYVLPSPNDPTRHL 307 Query: 265 NATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 + +K AGV HG+R S T A++G MA G KTV Y Sbjct: 308 TFGEHYGGWKRVLRAAGVPHVGTHGIRHRSTTDIANSGVPTKVGMALTGHKTVAMFMHYV 367 Query: 324 KGADR-IRLGIK--NSRRISSVVDSDDP 348 D+ +R + SRR + S P Sbjct: 368 HTEDKPVRDAAELVASRRQAITGGSPRP 395 >gi|330994896|ref|ZP_08318818.1| Tyrosine recombinase xerC [Gluconacetobacter sp. SXCC-1] gi|329758157|gb|EGG74679.1| Tyrosine recombinase xerC [Gluconacetobacter sp. SXCC-1] Length = 291 Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats. Identities = 54/285 (18%), Positives = 107/285 (37%), Gaps = 18/285 (6%) Query: 52 TGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDY 111 P E +P+ L LI + + N+R ++ES + G Sbjct: 6 RAMPPTDEAQKAPQNSADNL--LIKTWL-----HNRGENTRRAYESDVRAFLAHVGKT-L 57 Query: 112 RKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171 ++T +++ +S ++ + L +++ L + E + + +V PK + Sbjct: 58 PEVTAPDLQNWFDSLTGADATRRRKLMAVKSLLSYGAAMEMLPRDVGPAVRIPKGRDSLH 117 Query: 172 -RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN---NIFSIKTQ 227 R T+E ++ ++ + R+ L +GLR S+ C + L+ + Sbjct: 118 ERILTQEQVRALIDGETDP-RRRVMLRVLYATGLRISELCAVRWKDLKRRQQGGVAHVFG 176 Query: 228 KTGTIITVELPDGFMKLLAMTPIGKET---FFINNDKQKMNATQFSIWFKAKATKAGVNK 284 K G TVE+P K + + +D ++ K A +AG+ + Sbjct: 177 KGGKNRTVEIPAKVWKEIVALRVDSRPEAPMVPGHDGGPLSVDAVHRSVKRAAKRAGLPE 236 Query: 285 --SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 SAH +R A+ D GA AH + G ++ Y+ + Sbjct: 237 QVSAHWLRHAYASHMQDNGAPAHVVQQQLGHTSLATTTRYSHARE 281 >gi|229096923|ref|ZP_04227892.1| DNA integration/recombination/invertion protein [Bacillus cereus Rock3-29] gi|228686533|gb|EEL40442.1| DNA integration/recombination/invertion protein [Bacillus cereus Rock3-29] Length = 368 Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats. Identities = 47/292 (16%), Positives = 92/292 (31%), Gaps = 35/292 (11%) Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESY-FDQIIRKSGDFDYRKITTKHIRSGVE 124 TLK + E+ K + ++ +E +I G + K+ I+ Sbjct: 60 PSKVTLKDYLLEWLKVKE-MEVDKSTYAGYECIVLKHLIPALGKNTFNKLNVIQIQQFYR 118 Query: 125 SRKHTPSSAIQFL--TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 + S++ L + A+ Q + NP +PK++ I+ WT+E+++ F Sbjct: 119 NLTGKLSNSRIILIHRVLNTALNQAIAQNLITTNPAKFAAKPKKERTSIQTWTEEEVKTF 178 Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--------------NNIFSIKTQK 228 S+ S+ F + +G+R + Q + +N + Sbjct: 179 L-LHSQNSRYHTGFILAITTGMRLGEVLGLRWQDVDFDNHTVTINQTLGHDNKIKQSAKT 237 Query: 229 TGTIITVELP----DGFMKLLAMTPIGKETF----------FINNDKQKMNATQFSIWFK 274 + + T+ +P + K K F + F + Sbjct: 238 SSSKRTLPIPIETINALKKHHLFIKKEKLRFGNAYNDSNLIVCTMSGNIVYRDYFRKSYY 297 Query: 275 AKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324 KA V K H +R AT+ G + G + Y+ Sbjct: 298 TIIQKANVPKIKFHDLRHTHATLLLKQGVHPKIVSERLGHSNISMTLSVYSH 349 >gi|94972396|ref|YP_595615.1| integrase [Lawsonia intracellularis PHE/MN1-00] gi|94731933|emb|CAJ53922.1| Integrase [Lawsonia intracellularis PHE/MN1-00] Length = 383 Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats. Identities = 64/367 (17%), Positives = 128/367 (34%), Gaps = 38/367 (10%) Query: 12 TKERTRHG--KIIY--YFRKGHGRRIRLPYPHESTFIPAYMS-----------ALTGSTP 56 + +HG K Y Y R G + I P ES+ + A + L+ Sbjct: 19 QRRLDKHGVEKTFYILYRRCGEKKLIEEPVGRESSGMTAATANNIRGLRAIGKELSNVEK 78 Query: 57 KREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF----DYR 112 +++ + + TL+ + +Y+ ++ IS Y ++ KS D D Sbjct: 79 RKKEKEKQQNQKVTLQTIWDKYQLIYSEKK-SLKQDISRVKYLSDLMHKSPDILTTNDID 137 Query: 113 KITTKHIRSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170 + K + + P+S L ++ L + +++ L ++ PK + Sbjct: 138 TLRKKLTLTKSSKGGASLSPASIKHILVLLKRLINFGIQRNLCIKPQNLYIDMPKVDNQK 197 Query: 171 IRPWTKEDMQQFK-SFWSEGSQPRLAFE-FLLYSGLRCSDSCRAGVQH--LQNNIFSIKT 226 +K ++ + +E +Q +AF L +G+R S +NNI ++ Sbjct: 198 TEILSKNQLKNLLLALDAEPNQSDVAFIRLALVTGMRKSALLALKWSDCDFENNIITLSG 257 Query: 227 --QKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284 K G + + + +L P G F T K KA + K Sbjct: 258 NYAKKGKTDYIPMNNSAKSILLSIPKGNSDFIFATRNGTKRTTYNQRLIKRIKEKAKLPK 317 Query: 285 SA---HGVRKFSATISADAGA-TAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340 HG+R A+ A +G + + +T + Y L ++ + Sbjct: 318 DFRPLHGLRHNFASRLASSGKVDLYTIQRLLTHETPAMTQRYAH------LHNDALKKAA 371 Query: 341 SVVDSDD 347 +++D + Sbjct: 372 AIIDDEF 378 >gi|320104451|ref|YP_004180042.1| tyrosine recombinase XerD subunit [Isosphaera pallida ATCC 43644] gi|319751733|gb|ADV63493.1| tyrosine recombinase XerD subunit [Isosphaera pallida ATCC 43644] Length = 325 Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats. Identities = 42/277 (15%), Positives = 92/277 (33%), Gaps = 26/277 (9%) Query: 86 SLAVNSRISFESYFDQI-----IRKSGDFDYRKITTKHIRSGVE---SRKHTPSSAIQFL 137 L+ + ++ + R++ + + + V+ P++ + L Sbjct: 45 RLSPGTLAAYRGDLVKFTRWRAAREAVPRPIAALQVGDLEAYVDYLHGLGLAPATVCRHL 104 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPR 193 +S+ F++ + ++ N V P + + Q +E G + R Sbjct: 105 SSLSSFFRYLAIEGRLSENRVELVTAPSLWERLPTVIGPQAVSQLLEAPAEWGWKGRRDR 164 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-ELPDGFMKLLAM----- 247 E L +G R S+ ++ L + S + G + L + L Sbjct: 165 AILETLYATGCRVSEVAGLTIRDLDLDSASARVVGKGDRERIVPLGQPAQRALRRWLEER 224 Query: 248 -----TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300 F++ + ++ KA A AG++ S H +R AT Sbjct: 225 PRRVQRRPQVVAVFVSRTGRPLDRGSIWRIVKASARLAGLSATVSPHTLRHSFATHLLAG 284 Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 GA + G ++ + YT+ + RL +++ Sbjct: 285 GADLRAVQELLGHASISTTQIYTR-VEVSRLLEVHAK 320 >gi|53712683|ref|YP_098675.1| tyrosine type site-specific recombinase [Bacteroides fragilis YCH46] gi|52215548|dbj|BAD48141.1| tyrosine type site-specific recombinase [Bacteroides fragilis YCH46] Length = 383 Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats. Identities = 39/297 (13%), Positives = 94/297 (31%), Gaps = 22/297 (7%) Query: 41 STFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD 100 F Y + + K+ TL Y + + ++ ++ +YF Sbjct: 77 PDFYDRYSPHAYIDYSRVYVRHPKPKREYTLP---KGYLELLEQKRYSPSTVKTYRAYFS 133 Query: 101 QIIRKSGDFDYRKITTKHIRSGV----ESRKHTPSSAIQFLTSMRVLFKWAV--RQEYVA 154 + + ++ I + +K + S + +++ ++ +++Y Sbjct: 134 DFMEYHKGRNIDRLKVPDINKYILYLVNEKKISVSQQNMRINAIKFYYEQVKGGKRQYYG 193 Query: 155 INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGV 214 + R K +K ++++ + S + + +GLR S+ Sbjct: 194 -----GITRAKEYKSLPEVLSKNEIKRILAQIS-NIKHHCMISLVYSAGLRRSELLNLTP 247 Query: 215 QHLQNNIFSIKTQKTGTI-----ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF 269 Q + + S++ G ++ +L + K F ++ +A+ Sbjct: 248 QDINSETMSVRIMGKGKKCRYSLLSPKLLEELRHYFREYRPQKWLFEGETPGEQYSASAL 307 Query: 270 SIWFKAKATKAGVNKSAHG--VRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 K A +AG+ H +R AT + G H + G + Y Sbjct: 308 VKVLKEAAHRAGIKHRVHVHMLRHSFATHLLEQGTDLHTIQELLGHNDIKTTTIYLH 364 >gi|327483029|gb|AEA77436.1| Tyrosine recombinase XerC [Vibrio cholerae LMA3894-4] Length = 267 Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats. Identities = 34/237 (14%), Positives = 78/237 (32%), Gaps = 17/237 (7%) Query: 105 KSGDFDYRKITTKHIRSGVESRKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV 161 + G + ++ + +R V K SS L+S+R + + + + NP V Sbjct: 7 QVGLTHWTQLDSAWVRQLVMQGKRQGMKASSIATRLSSLRSFLDFLILRGELEANPAKGV 66 Query: 162 ERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ 218 P+++ + ++M Q + R E + +GLR ++ V+ + Sbjct: 67 SAPRKQRTLPKNLDVDEMAQLLEVTDDDPLSIRDRAIMELMYGAGLRLAELVSIDVKDVN 126 Query: 219 NNIFSIKTQKTGTI---ITV------ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF 269 + I+ G + + + + F++ +++ Sbjct: 127 LSEGEIRVIGKGNKERKVWFAGQAQEWVGKWLKLRSQLADSAETALFVSKLGTRISHRSV 186 Query: 270 SIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 K V + S H +R AT ++ + G + + + YT Sbjct: 187 QKRMAEWGQKQAVASHISPHKLRHSFATHMLESSNNLRAVQELLGHENIATTQIYTH 243 >gi|317051479|ref|YP_004112595.1| integrase family protein [Desulfurispirillum indicum S5] gi|316946563|gb|ADU66039.1| integrase family protein [Desulfurispirillum indicum S5] Length = 303 Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats. Identities = 43/261 (16%), Positives = 91/261 (34%), Gaps = 24/261 (9%) Query: 88 AVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKH--TPSSAIQFLTSMRV 142 + + + ++ G D++++T +R+ + R + + L +++ Sbjct: 22 SPGTISKYSQELGRLAEHLYEQGIHDWQEVTHLELRAYLYQRAGNLSKHTFSTVLATLKS 81 Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPW---TKEDMQQFKSFWSE-----GSQPRL 194 F++ VR+E NP + P+R + P ++ + + S + R Sbjct: 82 FFRFTVREEITHANPTTKLSFPRRSPQDKLPQYVNSEAQSEFLQQLLSLKRNFTNDRNRS 141 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLAM------ 247 L +G+R S+ C ++ + T+K G + + +K+L Sbjct: 142 IIFTFLMTGMRTSELCSLKRSNVSAGTQTFIITRKGGKQQVLPMATELVKILDTYWTPWY 201 Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATK-AGVNKS---AHGVRKFSATISADAGAT 303 I E +F Q M + + ++ + AH +R AT A Sbjct: 202 DAIPSEYYFCTKQGQPMTPRTIWHLVSRQLQRVDTLSCTKQGAHVLRHTFATNLVRRKAN 261 Query: 304 AHELMATYGWKTVDQAETYTK 324 E+ G V + YT Sbjct: 262 LIEIQNLLGHADVRMTQIYTH 282 >gi|255003412|ref|ZP_05278376.1| integrase/recombinase ripx (xerC) [Anaplasma marginale str. Puerto Rico] Length = 312 Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats. Identities = 35/270 (12%), Positives = 89/270 (32%), Gaps = 32/270 (11%) Query: 85 GSLAVNSRISFESYFDQI---------IRKSGDFDYRKITTKHIRSGVESR----KHTPS 131 + N+ ++E R + +++ + RS + R K + S Sbjct: 21 RRYSPNTVAAYERDIMDFYRSVCGEPCERSVSLQEVQELRSAEFRSWLADRFKQGKQSAS 80 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----QQFKSFWS 187 +A + ++ +R F++ + + + ++ +P + + + M ++ + Sbjct: 81 NA-RAISVVRSFFRYLHHKCGMKSSVVFNISKPIVRRSLPKVLEEPQMRKVMEEPEDLHW 139 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA- 246 + L GLR S++ L+ + + K + + ++ Sbjct: 140 THRRDLAVSALLYGCGLRISEAVNIKFCDLRQDELRV-LGKGSKERVIPILPWVRCIIDE 198 Query: 247 ----------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSA 294 E F+ +++ T F+ K + G+ ++ H +R A Sbjct: 199 YVASCPHQRVHGASSTEYVFVGLRGGRLSRTYFAYRMKGLRRRIGLPETTTPHTLRHSFA 258 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTK 324 T GA + G ++ + YT Sbjct: 259 THLFLEGADIRVVQELLGHASLATTQVYTH 288 >gi|225163580|ref|ZP_03725889.1| tyrosine recombinase XerD [Opitutaceae bacterium TAV2] gi|224801815|gb|EEG20102.1| tyrosine recombinase XerD [Opitutaceae bacterium TAV2] Length = 342 Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats. Identities = 45/282 (15%), Positives = 97/282 (34%), Gaps = 30/282 (10%) Query: 85 GSLAVNSRISFESYFDQ----IIRKSGDFDYRKITTKHIRSGV---ESRKHTPSSAIQFL 137 + ++ ++ES Q + R+ D+R +T + + + ++ +S + L Sbjct: 54 RGRSDHTVEAYESDLTQCATFLQRQKKLADWRAVTGAAVTDWLYSLDGDDYSVASLARKL 113 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS--------FWSEG 189 +++R+ + VR++ + ++ PK E++ + + Sbjct: 114 SALRMFARHLVREQTRPDDFTELLQGPKLVRRVPGTLNAEEVARLLAAPGGGGGGGGPHA 173 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMT 248 + R E SGLR S+ +Q + ++ K V + + LA Sbjct: 174 LRDRAILELFYSSGLRVSELSGLLLQQVDLENGMLRVFGKGAKERVVPVGSKAREALATY 233 Query: 249 PIGKET-----------FFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSAT 295 F++ ++ + K AG+ K H +R AT Sbjct: 234 LTAARHHFVKEKKTGSQLFLSERGTAISRKMLWVLVKKYTKLAGITKPVKPHLLRHSFAT 293 Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 GA + G T+ + YT + RL +++R Sbjct: 294 HLLSGGADLRAIQEMLGHATIGTTQIYT-AVEERRLLDQHAR 334 >gi|158320856|ref|YP_001513363.1| integrase family protein [Alkaliphilus oremlandii OhILAs] gi|158141055|gb|ABW19367.1| integrase family protein [Alkaliphilus oremlandii OhILAs] Length = 312 Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats. Identities = 44/288 (15%), Positives = 86/288 (29%), Gaps = 31/288 (10%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT---TKHIRSGVESR 126 TL+ + + ++E G+ +IT K + + S+ Sbjct: 3 TLQNAKELFLMENQLKGNTEKTIQNYERMITYFQNFIGNKAMEEITLFDVKQYQLYLSSK 62 Query: 127 KHTPSSAIQFLTS------------MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174 K + + +RV WA + + + ++ PK + I Sbjct: 63 KAEFKFTDKIDRTLSKKTIQTYTRQIRVFLNWAYAESLLKEDIGSKIKLPKAPKKVIEIL 122 Query: 175 TKEDMQQFKSF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQK 228 + E+++ G + + +L SGLR + + H NI + K Sbjct: 123 SDEEIELLYKCINDNTEFGLRNKCMISLMLDSGLRREEVITLDLDCIHFTQNIIKVH-GK 181 Query: 229 TGTIITVELP--------DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA 280 + L M FI+ +K + + + Sbjct: 182 GEKERIIPLGVYTKKLLFKYLNGYRPMPSYPTNRVFISQEKVPVTMDVMKMLMLRLKKRT 241 Query: 281 GVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 G+ + H +R AT AG A L G +++ Y+ A Sbjct: 242 GIQRLKPHLLRHTFATKYLIAGGDAFSLQMILGHTSLEMTRMYSHLAS 289 >gi|160890772|ref|ZP_02071775.1| hypothetical protein BACUNI_03217 [Bacteroides uniformis ATCC 8492] gi|156859771|gb|EDO53202.1| hypothetical protein BACUNI_03217 [Bacteroides uniformis ATCC 8492] Length = 376 Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats. Identities = 56/293 (19%), Positives = 100/293 (34%), Gaps = 21/293 (7%) Query: 46 AY--MSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII 103 AY SAL + PK+ SP P Y ++ + ++ ++ +YF + Sbjct: 72 AYIDYSALKNTQPKKSGKTSPAIPPG--------YAETLRQLRYSEHTVRAYTTYFKEFQ 123 Query: 104 RKSGDFDYRKITTKHIRSGVESRKHTP--SSAIQFLTSMRVLFKWAVRQEYVAINPCLSV 161 + + R I + I + + T SS Q L + F + C V Sbjct: 124 QYFAGRNLRYIRLEEINAYIVHLIDTRGISSCQQNLRINSIKFYFEKVLGLERK--CYEV 181 Query: 162 ERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--N 219 +R KR+ +KE+++ + F L +GLR S+ + Sbjct: 182 KRAKRERTLPDVLSKEEIKSILDATGPDIRLFCMFSLLYSAGLRISELLDLKPHDINVSR 241 Query: 220 NIFSIKTQKTGTIITVELPDGFMKLL---AMTPIGKETFFINNDKQKMNATQFSIWFKAK 276 ++ ++ K L ++ L A +E F + + S K Sbjct: 242 SLIRVRQGKGRKDRYTLLSKPLVRKLTEYAKLYKPQEWLFERYKGEPFTESIVSKKLKEA 301 Query: 277 ATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 A +AG+ K H +R AT + G + G + E Y +D Sbjct: 302 AKEAGITKRVYPHLLRHSFATHLIEQGTDLKIVKELLGHNQLKTTEMYVHISD 354 >gi|159046171|ref|YP_001541843.1| integrase family protein [Dinoroseobacter shibae DFL 12] gi|159046203|ref|YP_001541875.1| integrase family protein [Dinoroseobacter shibae DFL 12] gi|157913930|gb|ABV95362.1| phage integrase [Dinoroseobacter shibae DFL 12] gi|157913962|gb|ABV95394.1| phage integrase [Dinoroseobacter shibae DFL 12] Length = 290 Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats. Identities = 45/266 (16%), Positives = 82/266 (30%), Gaps = 19/266 (7%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133 L + + L ++ + G T + +R+ K A Sbjct: 9 LRRRFIEDMRIKGLQPKTQTMYLRAMRDFTGFLGHSPDSA-TPEELRAFQLDMKEKGVGA 67 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERP----KRKTEGIRPWTKEDMQQFKSFWS-E 188 F + VL + Y P ++R + + + E++ + Sbjct: 68 PTFNNRLTVLSFF-----YATTCPRPEMKRHMRYQRAAKKIPVVLSAEEVTRILEAAPGP 122 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLLA 246 G + R AF GLR S+ + + ++ I+ K V L + LL Sbjct: 123 GLRYRAAFSVAYGGGLRASEVTHLKIGDIDSDRMLIRIDQGKGRKDRHVMLSPSLLVLLR 182 Query: 247 ---MTPIGKETFFINNDK-QKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300 F ++ ++ QF+ F A + K S H +R AT + Sbjct: 183 DYYREARPAGWLFPGRNRVDPISTRQFNRAFGVACDFAEIKKRVSPHTLRHSFATHLLEG 242 Query: 301 GATAHELMATYGWKTVDQAETYTKGA 326 G + G ++ YTK A Sbjct: 243 GTDIRVIQVLLGHAKLETTTIYTKVA 268 >gi|260063566|ref|YP_003196646.1| putative site-specific recombinase [Robiginitalea biformata HTCC2501] gi|88783010|gb|EAR14184.1| putative site-specific recombinase [Robiginitalea biformata HTCC2501] Length = 297 Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats. Identities = 40/264 (15%), Positives = 91/264 (34%), Gaps = 24/264 (9%) Query: 85 GSLAVNSRISFESYFDQI----IRKSGDFDYRKITTKHIRSGV---ESRKHTPSSAIQFL 137 A ++ ++ + D + G+F IRS + S + + Sbjct: 14 KKYAAHTVKAYLADLDAFSEYCREEQGEFALADQPYPVIRSWIIHLMESGLNNRSVNRKV 73 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS-----EGSQP 192 S++ +K+ +RQ + +P + + K P+++ +M+ W E + Sbjct: 74 ASLKSYYKYQLRQGRIDASPLAAHKPLKIPRRVEIPFSESEMEGLLGEWEPSEGYEAHRD 133 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLAM---- 247 +L E L +G+R ++ + + +++ T K + L G ++ + Sbjct: 134 KLVVELLYTTGMRRAELIGLKLGDVDLEQGTLRVTGKRDKERILPLLPGIVREIRAYLEL 193 Query: 248 -----TPIGKETFFINNDKQKMNATQFSIWFKAK--ATKAGVNKSAHGVRKFSATISADA 300 + F+ + K+ A +S H +R AT + Sbjct: 194 RGAHFKSGSEPHLFLTSRGNKLYENLVYRIINRYLSMVSAKSKRSPHILRHTFATHLLNQ 253 Query: 301 GATAHELMATYGWKTVDQAETYTK 324 GA + + G ++ + YT Sbjct: 254 GADMNSVKELLGHSSLASTQVYTH 277 >gi|83941218|ref|ZP_00953680.1| putative integrase for prophage [Sulfitobacter sp. EE-36] gi|83847038|gb|EAP84913.1| putative integrase for prophage [Sulfitobacter sp. EE-36] Length = 341 Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats. Identities = 50/332 (15%), Positives = 103/332 (31%), Gaps = 30/332 (9%) Query: 10 FVTKERTRHGKII-YYFRKGHGRRI---RLPYPHESTFIPAYMSALTGSTPKREYINSPR 65 + + G + +++ G + + YP E F AY A P+ Sbjct: 2 HPVRRKLADGSVRFHFYAWRGGPKFWTDTVQYPTERAFFHAYAEA----------TARPQ 51 Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR----S 121 ++ + S S+ + + D + R + Sbjct: 52 PADYMTHQMVDGFLSSTAMPK-GDRSQADIRKWALRFADHFKDAPAVIFEERGSRGEMNA 110 Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 KH+P + W V + + + C + R WT+ D + Sbjct: 111 WRALWKHSPKQHDMAGVHAVRILNWGVAEGKLTEHHCHKLHRLYEVDRSEIVWTQGDREA 170 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ----NNIFSIKTQKTGTIITVEL 237 F + E R +GLR +D + H++ ++T K + + + Sbjct: 171 FDAIAPE--WVRRILCAACETGLRPADLIKLTSAHVELTPLGRRLRVRTNKRKRLAHIPI 228 Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSAT 295 K++ TP G+ N + + + S + KA + + + R +AT Sbjct: 229 TPTMAKVIDTTPSGQLLILTNANGNALTPHRASEGVRQWRDKAKLSDDLRLYDARGTAAT 288 Query: 296 ISADAGATAHELMATYGWK---TVDQAETYTK 324 ++ + E+ GW + E Y + Sbjct: 289 RLLNSDLSLAEIANHMGWSVRYAANVIENYAR 320 >gi|260890377|ref|ZP_05901640.1| tyrosine recombinase XerD [Leptotrichia hofstadii F0254] gi|260859997|gb|EEX74497.1| tyrosine recombinase XerD [Leptotrichia hofstadii F0254] Length = 257 Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats. Identities = 46/247 (18%), Positives = 92/247 (37%), Gaps = 25/247 (10%) Query: 106 SGDFDYRKITTKHIRSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER 163 ++ +I K I +E+ K +S ++ +++++ +K+ + V +P ++ Sbjct: 7 FAQKNFSEIEEKDIFEYIENLNEKLRRNSVLRKVSALKTFYKFCYLNKDVEKDPTGMIKT 66 Query: 164 PKRKTEGIRPWTKEDMQQFKSFWS---EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN 220 KR+ T ++M+Q EG Q +L + L+ +G R S++ ++ ++N Sbjct: 67 LKREQRLPEILTLKEMKQIVDNCPHTPEGMQNKLIIKILIATGARISETLNLEIKDVENQ 126 Query: 221 IFSIKT--QKTGTIITVELPDGFMKLLA----------MTPIGKETFFINNDKQKMNATQ 268 + K + + D + F N ++K Sbjct: 127 DYEFIKVLGKGSKYRIIPIYDSLENEIKNYLAIYRPKLKNASESFKIFPNTRREK----- 181 Query: 269 FSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 F K A A + K+ H R ATI GA + G + E YT Sbjct: 182 FWKDLKTIAKNAKIEKNVYPHIFRHSLATILLGNGADIRIVQEILGHANITTTEVYTH-V 240 Query: 327 DRIRLGI 333 ++ +L I Sbjct: 241 EKSKLKI 247 >gi|149177761|ref|ZP_01856361.1| integrase/recombinase [Planctomyces maris DSM 8797] gi|148843411|gb|EDL57774.1| integrase/recombinase [Planctomyces maris DSM 8797] Length = 316 Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats. Identities = 40/270 (14%), Positives = 91/270 (33%), Gaps = 25/270 (9%) Query: 86 SLAVNSRISFESYF------DQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139 +AVN+ ++ S ++ + + + RK ++ + L + Sbjct: 37 GMAVNTVSAYRSDIVQFLDWYRMQKPVPLSEVDLAFLSGYLQHLNRRKLAATTVSRHLVT 96 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRLA 195 +++ F++ V + +A + + PK + + E + Q + + R Sbjct: 97 LKLFFRYLVLEGVLAESVADLLNSPKLWKYLPKVLSPEKVNQLLAAPCRQDRYPLRDRAI 156 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT--------IITVELPDGFMKLLAM 247 + +G R ++ + ++ + G + V + +++ Sbjct: 157 LAMMYATGCRVTEIVTLPLNSVKLTEGYARCVGKGNKERMVSLNPVAVAAVEAYLRHERP 216 Query: 248 TPIGKET----FFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAG 301 + T F+N ++++ K A + G +K S H +R AT G Sbjct: 217 VLTRRNTTEQALFLNRGGKQLSRVMVWNIVKKNAARVGCSKEVSPHTLRHSFATHMMAGG 276 Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRL 331 A L G + + YT D RL Sbjct: 277 AEIRALQELLGHANIRTTQIYTH-VDHSRL 305 >gi|225630477|ref|YP_002727268.1| site-specific recombinase, phage integrase family [Wolbachia sp. wRi] gi|225592458|gb|ACN95477.1| site-specific recombinase, phage integrase family [Wolbachia sp. wRi] Length = 306 Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats. Identities = 43/286 (15%), Positives = 93/286 (32%), Gaps = 37/286 (12%) Query: 71 LKWLISEYRKSAHW----GSLAVNSRISFESYFDQIIRKS-----GDFDY---RKITTKH 118 L +I ++ W S + N+ S+ +I G+ + + ++ Sbjct: 3 LGSIIEKWY---EWLRCNRSYSPNTLESYMRDLKDLISFLNTHIGGEVNVGTLKNLSIPE 59 Query: 119 IRSG---VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCL-SVERPKRKTEGIRPW 174 +RS +R S + L+ +R FK+ ++ + N + S+ RP ++ + Sbjct: 60 LRSWLTSRYARGVNARSNTRALSVIRNFFKY-IKNNHNIDNEAVFSLSRPIQRRTLPKAL 118 Query: 175 TKEDMQQFKSFWSEGS--------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226 + +++ + L +GLR S++ V + N I T Sbjct: 119 SIPNIKTLLKEMKLSDLGEPWVVKREIAIIVLLYGTGLRISEALNLRVSDINNESL-IVT 177 Query: 227 QKTGTIITVELPDGF----MKLLAMTP--IGKETFFINNDKQKMNATQFSIWFKAKATKA 280 K V + + + P + F+ +K+ T + + Sbjct: 178 GKGDKQRQVFILPVVKKCIQEYIKACPYLDEAQHLFVGVRGKKLGRTYVANRLQKIRRML 237 Query: 281 GVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 + S H R AT + G +++ + YT Sbjct: 238 NLPEILSPHAFRHSFATHLLQEDIDIRSIQQLLGHSSLETTQIYTH 283 >gi|186474845|ref|YP_001856315.1| site-specific tyrosine recombinase XerC [Burkholderia phymatum STM815] gi|184191304|gb|ACC69269.1| tyrosine recombinase XerC [Burkholderia phymatum STM815] Length = 307 Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats. Identities = 50/288 (17%), Positives = 92/288 (31%), Gaps = 31/288 (10%) Query: 75 ISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTP 130 I+ Y S H L+ ++ ++ ++ + +T IR V + Sbjct: 7 IATYLSSLEHERRLSAHTLRAYTHELGELKTLANGRPLESLTATDIRGAVARAHAGGLSA 66 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQFKSFW 186 S L++ R ++W + + NP +V PKR + + +D M+ + Sbjct: 67 RSIGHRLSAWRAFYRWLAGRVDLPANPVATVRAPKRAKTLPKALSVDDTHKLMETPATAT 126 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRA-------------GVQHLQNNIFSIKTQKTGTII 233 +EG + E SGLR S+ G L + + + + Sbjct: 127 AEGLRDHAMLELFYSSGLRLSELVGLDAQYADADGYRSQGWLKLDDAEVEVLGKGNRRRV 186 Query: 234 TVELPDGFMKLLAMTPIGKET-------FFINNDKQKMNATQFSIWFKAKATKAGVNK-- 284 L A + E F++ +M+ K A AG+ Sbjct: 187 VPVGSKALEALRAWLAVRGELVKHDPHPLFVSVRGNRMSPNVVRDRVKRAALTAGIPANV 246 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 H +R AT + + G ++ + YT G D L Sbjct: 247 HPHVLRHSFATHVLQSSGDLRAVQELLGHASIAATQVYT-GLDFQHLA 293 >gi|256843164|ref|ZP_05548652.1| integrase [Lactobacillus crispatus 125-2-CHN] gi|256614584|gb|EEU19785.1| integrase [Lactobacillus crispatus 125-2-CHN] Length = 270 Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats. Identities = 40/235 (17%), Positives = 87/235 (37%), Gaps = 17/235 (7%) Query: 107 GDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166 G R+ + + RK SS ++ ++S+ +++ R++ VAI+P + + Sbjct: 16 GWTKVRERDIQVYLQHLAERKLARSSQLRKMSSLHSFYRFLTRRKLVAIDPTQGITLRRG 75 Query: 167 KTEGIRPWTKEDMQQFKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222 + + + + + +++Q + FE +G+R S+ + L ++ Sbjct: 76 EKKLPQFFYQPELKQVFDSLKGNKPLTMRNLAMFELFYATGMRVSEVSNLTLNQLDLDLQ 135 Query: 223 SIKTQKTGTI-ITVELPDGFMKLL-----AMTP-----IGKETFFINNDKQKMNATQFSI 271 +I G V D K L P ++ F+NN + + Sbjct: 136 TILVHGKGNKDRYVAFDDKTKKSLIAYLENARPLLLKNDDEQHVFLNNQGTGITSRGIET 195 Query: 272 WFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 + +AG++ H +R AT + GA + G ++ + YT Sbjct: 196 VMQKTFNQAGISGKVHPHELRHSFATAMLNNGADLRSVQELLGHSSLSATQIYTH 250 >gi|326387724|ref|ZP_08209330.1| phage integrase [Novosphingobium nitrogenifigens DSM 19370] gi|326207770|gb|EGD58581.1| phage integrase [Novosphingobium nitrogenifigens DSM 19370] Length = 300 Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats. Identities = 46/263 (17%), Positives = 86/263 (32%), Gaps = 18/263 (6%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLF 144 A N+ ++ + GD R G P+S + +++R + Sbjct: 22 RGAAANTLAAYRRDLAGAAQVLGDLALAD-RGALARLGEVWADLAPASLARKASALRQFY 80 Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW--------SEGSQPRLAF 196 + V + +P ++ R + + R ++ S + Sbjct: 81 AFLVEEGLREDDPGDALPRVRARRPLPRLLDHGEIGALFSLAEADAAEGDPAALRLLALV 140 Query: 197 EFLLYSGLRCSDSCRAGVQHL-QNNIFSIKTQKTGTIITVELPD----GFMKLLAMTPIG 251 E L SGLR ++ + + ++ F T K G V + + L + P G Sbjct: 141 ELLYGSGLRATELVSLPLVAVPRDAPFLAITGKGGQQRLVPVGERAGAALRDWLRVRPAG 200 Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHELM 308 F + + + + A +AG++ S H +R AT + GA L Sbjct: 201 GRYVFPSPRGGHLTRVRLFQLLRDLALRAGLDPEKVSPHVLRHAFATHLLEGGADLRVLQ 260 Query: 309 ATYGWKTVDQAETYTKGADRIRL 331 G + + YT D RL Sbjct: 261 TLLGHADIATTQIYTH-VDGARL 282 >gi|255994142|ref|ZP_05427277.1| integrase/recombinase XerD [Eubacterium saphenum ATCC 49989] gi|255993810|gb|EEU03899.1| integrase/recombinase XerD [Eubacterium saphenum ATCC 49989] Length = 298 Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats. Identities = 37/263 (14%), Positives = 87/263 (33%), Gaps = 26/263 (9%) Query: 85 GSLAVNSRISFESYFDQI-IRKSGD-----FDYRKITTKHIRSGVESRKHTPSSAIQFLT 138 SL+ ++ ++ I G + ++ + + P++ + ++ Sbjct: 18 RSLSTSTIGAYHEDLQAFHIFVYGKGIKGYKRVKNTDIDDFVENLKRQDYAPATIRRRIS 77 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRL 194 S+R + + V + NP L ++ PK + I +T E++ + G + + Sbjct: 78 SVRAFYNYLVNTGAMRKNPTLGLKAPKLNKKTIDYFTVEEIDLLLASVTDDTDSGIRDKA 137 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIG--- 251 E + +GL+ ++ + + I + + + K + Sbjct: 138 VLELMYAAGLQLTELLELKMSDVDIRAGLITAGLKKRRV-IPIGSHARKAVEKYISDVRK 196 Query: 252 -----------KETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISAD 299 F+N +K + FK A K G+ K + + +R A Sbjct: 197 LKFSKLSKKDASSPLFVNYLNKKFSRQGIWKIFKDYAAKTGIIKFTPNMLRNSFAVHMLQ 256 Query: 300 AGATAHELMATYGWKTVDQAETY 322 GA + G + + + Y Sbjct: 257 NGADIKTVQELMGHENISITKQY 279 >gi|239905648|ref|YP_002952387.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1] gi|239795512|dbj|BAH74501.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1] Length = 374 Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats. Identities = 57/310 (18%), Positives = 101/310 (32%), Gaps = 33/310 (10%) Query: 35 LPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT--LKWLISEYRKSAHWGSLAVNSR 92 LP P + A A TGST ++P+ L L S+Y Sbjct: 50 LPVPDPQSVTAAVQVAQTGSTTDTPTSQVLGQQPSGMLLSDLGSKYLAHMQASGRTEKHI 109 Query: 93 ISFESYFDQI-IRKSGDFDYRKIT--------TKHIRSGVESRK--HTPSSAIQFLTSMR 141 + E + + I GD +T H + + + ++ + Sbjct: 110 RNIEHLVNHVFIPVLGDKPVNDLTYQDDMVPFIIHFQGVSSRTGKVRSQYTVNKYCDYLS 169 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW----TKEDMQQFKSFWSEGSQPRLAFE 197 +F + + + ++NP ++PK + PW T +D ++ + + A E Sbjct: 170 FIFNFGIDNGFTSVNPLKIWKKPKVQ-----PWDMKLTLDDAKKIMANAEP--HLKWAME 222 Query: 198 FLLYSGLRCSD--SCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKE 253 G R + + + I KT T TV + F+K L + Sbjct: 223 VCFNLGTRPGESELLSLRWEDVDFKAGTVRIYASKTKTYRTVPINPEFLKRLEKEQAESQ 282 Query: 254 TFFINND-KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMAT 310 T ++ +K+ FK +AG+N + +R AT GA + Sbjct: 283 TGYVIEYMGRKLT--TIRKAFKNACKRAGINYPTRMYDLRHLFATTLLRKGADLAAVSKM 340 Query: 311 YGWKTVDQAE 320 G TV Sbjct: 341 MGHSTVKMTA 350 >gi|282858397|ref|ZP_06267577.1| phage integrase, N-terminal SAM domain protein [Prevotella bivia JCVIHMP010] gi|282588845|gb|EFB93970.1| phage integrase, N-terminal SAM domain protein [Prevotella bivia JCVIHMP010] Length = 290 Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats. Identities = 44/261 (16%), Positives = 99/261 (37%), Gaps = 21/261 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFD----YRKITTKHIRSG---VESRKHTPSSAIQFL 137 ++ + ++ R +FD + I + +R+ + K +S + L Sbjct: 13 KGYSLKTIDNYRDDLKGFERFYKNFDETLSWESIDSDIVRNWVEFMMDNKAAAASVNRRL 72 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK--SFWSEGSQPRLA 195 +++R L++++++ +V +P ++ PK+ + + ++ Q W++ Q LA Sbjct: 73 SALRSLYRYSLKHGFVEKDPVYGIQGPKKPKSLPQFVKESELDQLLQDEMWADTYQDLLA 132 Query: 196 FEF---LLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLAM---- 247 L +G+R + + + + S+K T K + + L Sbjct: 133 RTLIVVLYETGMRLGEIVGLNLNSVDFHTSSVKVTGKRNKQRVIPFGEELESSLKAYLGK 192 Query: 248 --TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGAT 303 G+E FF +++N Q K +K ++ H +R AT + A Sbjct: 193 RKAIAGEEAFFTTEKGERVNDYQVRDLVKKNLSKVSTLKKRTPHVLRHSFATAMLNHNAG 252 Query: 304 AHELMATYGWKTVDQAETYTK 324 + G +++ E YT Sbjct: 253 LESVRKLLGHESLSTTEIYTH 273 >gi|328462457|gb|EGF34479.1| tyrosine recombinase xerD [Lactobacillus rhamnosus MTCC 5462] Length = 182 Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats. Identities = 30/169 (17%), Positives = 55/169 (32%), Gaps = 15/169 (8%) Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQKTGTIITVE 236 M + + G + R FE + +GLR S+ + HL N+ + T K V Sbjct: 1 MAKPDTTKPLGLRDRAIFELMYATGLRVSEVVGLRLDQLHLAMNLLQV-TGKGDKERLVP 59 Query: 237 LPDGFMKLLAMTPIGKE----------TFFINNDKQKMNATQFSIWFKAKATKAGVNK-- 284 + + F+N + KA G+ K Sbjct: 60 ISPQAADWVNRYLQESRPRLIKHQQPKAVFVNFHGHALTRQAIWKNLKAYIASVGIEKDV 119 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 + H +R AT + GA + G + + YT +++ + + Sbjct: 120 TPHTLRHSFATRLLENGADLRVVQELLGHSDISTTQIYTHLSNQHLVAV 168 >gi|225849231|ref|YP_002729395.1| recombinase [Sulfurihydrogenibium azorense Az-Fu1] gi|225644770|gb|ACN99820.1| recombinase [Sulfurihydrogenibium azorense Az-Fu1] Length = 297 Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats. Identities = 45/285 (15%), Positives = 95/285 (33%), Gaps = 28/285 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE---SRKHTPSSAIQFLTSMR 141 + N+ ++ +Q I+ GD + ++ I S+K S+ + L ++ Sbjct: 15 ADKSPNTIKNYSVDLNQFIKIVGDKEVELVSKSDIAKFRMVLQSQKKKSSTIARKLATLN 74 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY 201 L+++ + E V ++P RPK + E+++ Q + LL Sbjct: 75 SLYQYLIDLELVKVSPITKSHRPKISQRIPSSLSNEEIKTLLKNID-NLQDKAIVVLLLT 133 Query: 202 SGLRCSDSCRAGVQHL--------------------QNNIFSIKT-QKTGTIITVELP-D 239 +GLR S+ ++ +++I I+ K V + Sbjct: 134 TGLRSSELLNIKKSNILIERQNQTFSVDKVIEEGLKEDDIAYIRVVGKGDKEREVPITGK 193 Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISAD 299 L+ ++ K K + H +R +AT++ Sbjct: 194 PLQILVEYLKEVNHYIDSKTPIFPISYHTLWRKIKDIGKKIATSLHPHKLRHTAATVALA 253 Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344 +GA + G + Y K + L K ++ +S +D Sbjct: 254 SGAELRVIQELLGHASPITTARYAKVGQKQLL--KATKALSENID 296 >gi|120609369|ref|YP_969047.1| phage integrase family protein [Acidovorax citrulli AAC00-1] gi|120587833|gb|ABM31273.1| phage integrase family protein [Acidovorax citrulli AAC00-1] Length = 401 Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats. Identities = 57/308 (18%), Positives = 102/308 (33%), Gaps = 29/308 (9%) Query: 44 IPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-I 102 + A + + T+ L ++ + +++ +++ D+ I Sbjct: 73 LAQEWLAQVRRGGDPSADKAMARSAPTVAELCKKFMEDHSKQRNKPSTQRGYQAVIDRCI 132 Query: 103 IRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVA--INPCLS 160 + G + + + S ++ H P+ A + + MR +F A Y NPC Sbjct: 133 VPMLGRMKVQDVKRPDVASTMKKMVHKPAEANRAFSVMRKMFNLAEVWGYRPDGTNPCRH 192 Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWS-------------EGSQPRLAFEFLLYSGLRCS 207 V + + E+M + + RL FEF R S Sbjct: 193 VPM-YPNGKATHLISDEEMGKLFRYLDFLETDGLGLDHAILPLAIRLQFEFA----GRRS 247 Query: 208 DSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMTPI--GKETFFI--NNDK 261 + + N KTG + L + +LL+ G F N+ Sbjct: 248 EIVTLQWDWVDLENRRVVWPDSKTGGMSK-PLSEEAHRLLSTASRQDGCPHVFPSPNHPG 306 Query: 262 QKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320 + M ++ + +AGV HG+R SAT A++G MA KTV Sbjct: 307 KPMTTGEYYSGWTRILKRAGVTHVGTHGIRHRSATDIANSGIPVKVGMALTAHKTVAMFM 366 Query: 321 TYTKGADR 328 Y D+ Sbjct: 367 RYVHTEDK 374 >gi|291286568|ref|YP_003503384.1| integrase family protein [Denitrovibrio acetiphilus DSM 12809] gi|290883728|gb|ADD67428.1| integrase family protein [Denitrovibrio acetiphilus DSM 12809] Length = 390 Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats. Identities = 55/312 (17%), Positives = 113/312 (36%), Gaps = 26/312 (8%) Query: 39 HESTFI-PAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFES 97 + TF Y + +SP+ T L + +K+ + + I++ S Sbjct: 59 DDKTFKYAEYFPESRVAKALPMADSSPQISFGTYAILWLDSQKTV----FSHATFITYTS 114 Query: 98 YFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINP 157 + ++ + I HIR+ +++ + +P + + + + AV + + NP Sbjct: 115 SINNLLATFENMSICDIKPAHIRTYIKNSEVSPKTLKNHVGVLSSILSAAVEDDLIPKNP 174 Query: 158 CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA-FEFLLYSGLRCSDSCRAGVQH 216 C SV+ P + + P + E++ ++ LA F ++G+R + Sbjct: 175 CTSVKLPHISSVEVDPLSLEEITMILNWMKSHHPNMLAFFAVAFFTGMRTGEIMGLQWGD 234 Query: 217 LQNNIFSIK------------TQKTGTIITVELPDGFMKLL----AMTPIGKETFFINND 260 + N +I KT TV++ + L T + E F+ + Sbjct: 235 IDFNSHTITISRTITAGKLKHRTKTADSRTVDILTELDEYLSYHKQFTYMKSEWLFLTYE 294 Query: 261 KQKMNATQ--FSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVD 317 + N T ++K G+ ++ + R A + D G + L G KT+D Sbjct: 295 NKPFNKTDNIIKTYWKPCLKALGIKYRTLYQTRHTFACLMLDVGENINWLKKMLGHKTLD 354 Query: 318 QA-ETYTKGADR 328 Y D+ Sbjct: 355 MILRRYGNRIDK 366 >gi|225867105|ref|YP_002752483.1| site-specific recombinase, phage integrase family [Bacillus cereus 03BB102] gi|225786133|gb|ACO26350.1| site-specific recombinase, phage integrase family [Bacillus cereus 03BB102] Length = 322 Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats. Identities = 46/284 (16%), Positives = 92/284 (32%), Gaps = 28/284 (9%) Query: 86 SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES---RKHTPSSAIQFLTSMRV 142 + + F +R+ IT KH++ + R P++ +++++ Sbjct: 41 GFRKRTIDDYTKLFRYFMRELNIDRVEIITAKHVQMYINKLISRDLAPATVNIRISALKS 100 Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRLAFEF 198 +FK Q Y NP + + + I +++ G + A Sbjct: 101 IFKRLHEQGYTKSNPAIDFVKLRTDEAPIFTLNNNQIKRLFRVVDKTTYAGYRDYCAMLL 160 Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSIKTQ----KTGTIITVELPDGFMKLLAMTPIGKET 254 +L+ GLR ++ + V L + +I K V + + L M Sbjct: 161 MLHCGLRVNEVNQLEVNDLDFDNLTIMLSGAKNKNRKTRAVPMTKRVAEELRMLIEESRD 220 Query: 255 FF-------INNDKQKMNATQFSIWFKAKATKAGVNK----SAHGVRKFSATISADAGAT 303 +F + +D ++ AG++K S H +R AT G + Sbjct: 221 YFEVTTNVFLTHDGNSIDNDLLRKRMYRYGQFAGLSKECRPSPHSLRHTFATNFLRNGGS 280 Query: 304 AHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347 + LM G + Y RL + + V + + Sbjct: 281 VNALMRIMGHADITTTMRYV------RLNDEAVKEQYEKVAAKN 318 >gi|152988673|ref|YP_001351339.1| site-specific tyrosine recombinase XerC [Pseudomonas aeruginosa PA7] gi|166918894|sp|A6VE54|XERC_PSEA7 RecName: Full=Tyrosine recombinase xerC gi|150963831|gb|ABR85856.1| tyrosine recombinase XerC [Pseudomonas aeruginosa PA7] Length = 303 Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats. Identities = 38/288 (13%), Positives = 97/288 (33%), Gaps = 24/288 (8%) Query: 85 GSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIR---SGVESRKHTPSSAIQFLT 138 ++ ++ ++ +I+ K+G D+ + T+ +R + + + + S + L+ Sbjct: 16 RQVSAHTLDGYQRDLLKILALAEKAGLTDWNALDTRTLRTFVARLHQQGQSSRSLARLLS 75 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRL 194 + R +++ +R+ +P + PK + R + Q E + + Sbjct: 76 ATRGFYQYLLREGRCRHDPANGLSAPKSPRKLPRTLDADRALQLLDGAVEDDFIARRDQA 135 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT-VELPDGFMKLLAM------ 247 E SGLR S+ ++ L ++ + G + + + + L Sbjct: 136 LLELFYSSGLRLSELVGLDLEWLDLKEGLVRVRGKGNKVRELPVGKAARQALEAWLPLRA 195 Query: 248 -TPIGKETFFINNDKQKMNATQFSIWFKAK-ATKAGVNKSAHGVRKFSATISADAGATAH 305 FI +++ + + + G + H +R A+ ++ Sbjct: 196 QATPEDGAVFIGRGGKRLTPRAVQLRVRQAGVRELGQHLHPHMLRHSFASHLLESSGDLR 255 Query: 306 ELMATYGWKTVDQAETYT-----KGADRIRLGIKNSRRISSVVDSDDP 348 + G + + YT A ++R + +DP Sbjct: 256 AVQELLGHADIATTQIYTHLDFQHLASVYDRAHPRAKRKGNADGGNDP 303 >gi|52424578|ref|YP_087715.1| site-specific tyrosine recombinase XerC [Mannheimia succiniciproducens MBEL55E] gi|81387473|sp|Q65V80|XERC_MANSM RecName: Full=Tyrosine recombinase xerC gi|52306630|gb|AAU37130.1| XerC protein [Mannheimia succiniciproducens MBEL55E] Length = 295 Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats. Identities = 39/260 (15%), Positives = 95/260 (36%), Gaps = 21/260 (8%) Query: 85 GSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIRSGVESRKHTP---SSAIQFLT 138 ++ + +++ D +I++++ ++R+++ +R + K + S L+ Sbjct: 16 RQVSSYTLTNYQRQMDAVMKILQENDIQNWRQVSPSVVRFILAQSKKSGLHEKSLALRLS 75 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK---SFWSEGSQPRLA 195 ++R + V Q + +NP + + PK+ + E + + S + + Sbjct: 76 ALRQFLAFLVLQGELKVNPAIGISAPKQGKHLPKNINAEQLNKLLDNNSKEPIDLRDKAM 135 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------ELPDGFMKLLA 246 E + SGLR S+ + L I+ G + + + L Sbjct: 136 LELMYSSGLRLSELQGLNLTSLNFRSREIRVLGKGNKERILPFGRHASHSVQEWLKVRLL 195 Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATA 304 P + F+++ +M+ + + G+N + H +R AT +A + Sbjct: 196 FNP-KDDALFVSSLGNRMSNRSIQKRMEIWGVRQGLNSHLNPHKLRHSFATQMLEASSDL 254 Query: 305 HELMATYGWKTVDQAETYTK 324 + G + + YT Sbjct: 255 RAVQELLGHSNLSTTQIYTH 274 >gi|330443758|ref|YP_004376744.1| tyrosine recombinase XerD [Chlamydophila pecorum E58] gi|328806868|gb|AEB41041.1| tyrosine recombinase XerD [Chlamydophila pecorum E58] Length = 321 Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats. Identities = 35/229 (15%), Positives = 74/229 (32%), Gaps = 23/229 (10%) Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 + R ++ + L +++V F + + + P +E PK + ++ Sbjct: 81 FVEKLHERNEAEATLARRLIALKVFFIFLKDAQLLKHPPI--IEHPKIWKRLPTVLSPQE 138 Query: 179 MQQF-----KSFWSEG---SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230 ++Q ++ ++ L +G+R S+ C + + + + T K Sbjct: 139 VEQLLLTPKRAKHLSPLIVARDTAILYTLYSTGIRVSELCDLEIGDVNDEFIRV-TGKGS 197 Query: 231 TIITVEL-----------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK 279 V L F L+ +E F++ +K+ + A + Sbjct: 198 KTRLVPLGSLARDAIDAYLSPFRDLMRQKSPKEEHLFLSFRGKKLERSCIWRRIHEYAKQ 257 Query: 280 -AGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 S H +R AT + A + G + E YT A Sbjct: 258 ITSKPVSPHSLRHAFATHLLNNKADLRVIQEMLGHSRISSTEIYTHVAS 306 >gi|300812249|ref|ZP_07092687.1| tyrosine recombinase XerC [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300496763|gb|EFK31847.1| tyrosine recombinase XerC [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|325686014|gb|EGD28073.1| site-specific tyrosine recombinase XerC [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 295 Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats. Identities = 40/264 (15%), Positives = 101/264 (38%), Gaps = 24/264 (9%) Query: 85 GSLAVNSRISFESYF---DQIIRKSGDFD-YRKITTKHIRSGVES--RKHTPSSAIQFLT 138 S + + ++++ + +++G F + +I+ + + + + +K S+ + L+ Sbjct: 15 RSYSPKTVLAYQKDLAAAKKFWQENGGFPGWDQISRRDLEIYLLATGQKLASSTLSRKLS 74 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG----SQPRL 194 S++ ++ R+ V +P ++++ + K + + ++++ Q ++G + R Sbjct: 75 SLKSFYRLLTRRGLVKADPTVAIQLRRGKKKLPEFFYQDEVGQVIRSLNDGKPLTVRNRA 134 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLL-----AMT 248 +G+R S+ ++ L N + K V K L A Sbjct: 135 IVALFYATGMRLSELTDLKIKQLDLENGMILVHGKGNKDRYVFFDQESKKYLEEYLQAAR 194 Query: 249 P------IGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADA 300 P F+N + +++ + + KAG+ H +R AT + Sbjct: 195 PSLLKNEPDTGAVFLNKLGRPISSRGIAKAVQQIFQKAGLTAGAHPHELRHSFATAMLNN 254 Query: 301 GATAHELMATYGWKTVDQAETYTK 324 GA + G + + + YT Sbjct: 255 GADLRSVQELLGHEDLSTTQIYTH 278 >gi|294828085|ref|NP_712528.2| integrase/recombinase XerD [Leptospira interrogans serovar Lai str. 56601] gi|302393797|sp|Q7ZAM8|XERC_LEPIN RecName: Full=Tyrosine recombinase xerC gi|302393800|sp|Q72RY9|XERC_LEPIC RecName: Full=Tyrosine recombinase xerC gi|293385933|gb|AAN49546.2| integrase/recombinase XerD [Leptospira interrogans serovar Lai str. 56601] Length = 311 Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats. Identities = 50/260 (19%), Positives = 92/260 (35%), Gaps = 22/260 (8%) Query: 85 GSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGVESRKHT----PSSAIQFLT 138 + + N+ ++ + D +I IRS S + L+ Sbjct: 31 KNYSQNTINAYSIDLKFFFEFCEKEQLDIFQIEPVDIRSYFAYLAKKHEIDRRSQSRKLS 90 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS------QP 192 S+R +K +R++ V NP + PK + E + + + ++ F SE + + Sbjct: 91 SLRTFYKVLLREDLVKSNPATQLSFPKVRKEVPKNFRINETEEILEFESENASEVSEIRD 150 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT--------VELPDGFMKL 244 R E L SGLR + A + L ++ +K G V +++ Sbjct: 151 RAMIEVLYSSGLRVFELVNAKLNSLSKDLTVLKVLGKGRKERFVYFGKEAVSSLQKYLEY 210 Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGA 302 ++ E F+N +K+ + K G K+ H R AT DAGA Sbjct: 211 RNVSFPDAEEIFLNQRGKKLTTRGVRYILNERRKKMGWEKTITPHKFRHTFATDLLDAGA 270 Query: 303 TAHELMATYGWKTVDQAETY 322 + G ++ + Y Sbjct: 271 EIRAVQELLGHSSLSTTQIY 290 >gi|167585124|ref|ZP_02377512.1| site-specific tyrosine recombinase XerC [Burkholderia ubonensis Bu] Length = 306 Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats. Identities = 43/280 (15%), Positives = 88/280 (31%), Gaps = 32/280 (11%) Query: 75 ISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTP 130 I+ Y + H L+ ++ ++ ++ + + ++ +R V + Sbjct: 6 IAAYLSNLKHVRQLSDHTLRAYTHELGELKKLAAGRPLEALSAVDMRGAVARAHAAGLSA 65 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 S L++ R ++W ++ + NP +V PKR + + +D G+ Sbjct: 66 RSISHRLSAWRAFYRWLAQRIEMPANPVAAVRAPKRAKTLPKALSVDDATALMDAPLPGT 125 Query: 191 ----QPRLAFEFLLYSGLRCSDSCRA-------------GVQHLQNNIFSIKTQKTGTII 233 + E L SGLR ++ G L +++ K Sbjct: 126 TEGLRDHAILELLYSSGLRLAELIGLDVRYAQADGYRSAGWLDLAEAEVTVR-GKGNKER 184 Query: 234 TVELPDGFMKLLAMT--------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284 V + + L F++ +M+ K A AG+ Sbjct: 185 KVPVGRKAIDALNAWLAVRGEFVKHDPHPLFLSVRGNRMSPGVVRERVKRAALAAGIPAH 244 Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 H +R AT + + G +V + YT Sbjct: 245 VHPHVLRHSFATHVLQSSGDLRAVQELLGHASVAATQVYT 284 >gi|312793729|ref|YP_004026652.1| integrase family protein [Caldicellulosiruptor kristjanssonii 177R1B] gi|312180869|gb|ADQ41039.1| integrase family protein [Caldicellulosiruptor kristjanssonii 177R1B] Length = 319 Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats. Identities = 28/272 (10%), Positives = 76/272 (27%), Gaps = 22/272 (8%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130 + + + + + +E + ++ D + S+ P Sbjct: 14 WEDALQLFLSYKKAQGRSDLTIRDYEIHIRAFFKRYPDCFNDTQKLRKCLIEYLSQPMKP 73 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS--- 187 + + +++ W V + + NP + K + D++ + Sbjct: 74 VTYNLRMKNLKAFLNWCVEEGIIPTNPIAKFKPRKTDDRIVEI----DIETLQKLLQLPD 129 Query: 188 ----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK----TQKTGTIITVELPD 239 G + L +G+R ++ H + KT + + Sbjct: 130 RKTFAGLRDYALMLLTLDTGIRPKEAFSLLKDHFDFKNMQVVIPSDVAKTRVSRVLPISP 189 Query: 240 GFMKLLAMTPIGKET-------FFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKF 292 + + F + + +N +++ + + + GV + +R Sbjct: 190 VTANAIKKLISSRHPQWDDSVPVFCSVTGKPLNRYRWNERMREYSKQLGVKIKPYDLRHM 249 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTK 324 A + G L G T++ + Y Sbjct: 250 FALLYLKNGGYELSLQKIMGHTTLEMTKKYVH 281 >gi|150025257|ref|YP_001296083.1| tyrosine recombinase XerC [Flavobacterium psychrophilum JIP02/86] gi|149771798|emb|CAL43272.1| Tyrosine recombinase XerC [Flavobacterium psychrophilum JIP02/86] Length = 298 Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats. Identities = 43/264 (16%), Positives = 101/264 (38%), Gaps = 26/264 (9%) Query: 85 GSLAVNSRISFESYFDQ----IIRKSGDFDYRKITTKHIRSGVESRKH---TPSSAIQFL 137 + + + +++ + K + +++ IRS + S + +S + + Sbjct: 16 KNYSPLTALAYGKDLQFFQTFLEIKFDNTPLEEVSYTLIRSWIVSMVDAEMSNTSVNRKI 75 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ------QFKSFWSEGSQ 191 S++ +K+ ++ + + INP + K + P+++ ++ Q+K+ + EG + Sbjct: 76 ASLKAFYKFLLKTKQIEINPLSKHKALKTPKKIQIPFSEAELDTVLTQIQYKAGF-EGMR 134 Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAM--- 247 +L + +G+R S+ + + +IK K + L +K + + Sbjct: 135 DKLIIDLFYTTGIRRSELISLQISNTNLVAGTIKVIGKRNKERIIPLLPVIIKQIKVYLA 194 Query: 248 ------TPIGKETFFINNDKQKMNATQFSIWFKAK--ATKAGVNKSAHGVRKFSATISAD 299 + KE + ++ K N T V KS H +R AT + Sbjct: 195 ERKQLSLIVAKENLILLSNGNKANETFVYRLINDYFSNVSEKVKKSPHMLRHTFATHMLN 254 Query: 300 AGATAHELMATYGWKTVDQAETYT 323 GA + + G ++ + YT Sbjct: 255 HGADLNSIKELLGHSSLASTQVYT 278 >gi|253573104|ref|ZP_04850494.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] gi|256842101|ref|ZP_05547606.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|301308733|ref|ZP_07214685.1| mobilizable transposon, int protein [Bacteroides sp. 20_3] gi|251837298|gb|EES65399.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] gi|256736417|gb|EEU49746.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|300833257|gb|EFK63875.1| mobilizable transposon, int protein [Bacteroides sp. 20_3] Length = 397 Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats. Identities = 58/295 (19%), Positives = 107/295 (36%), Gaps = 37/295 (12%) Query: 65 RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD-FDYRKITTKHIRSGV 123 + K + +L++ +S GSL N + + ++ GD +R I + S V Sbjct: 99 KSKANVIDYLMNMRSQSKERGSL--NYEKTVGNTIRELKLFRGDYIAFRDIDKDFLNSFV 156 Query: 124 ESRK-HTPSSAIQFLTS---------------MRVLFKWAVRQEYVAINPCLSVE---RP 164 + K +S L + +R A ++ + +NP + + Sbjct: 157 DFLKQAKKASKFGLLKAGGVLSNNSVIAYYGVLRTAINRAYKEGIITVNPTKEFDFASKV 216 Query: 165 KRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL----QNN 220 K + T E++++ + + AF F GLR SD + L + Sbjct: 217 KAEVSRREYLTIEELKRLIGTECKYEIMKQAFLFSCLCGLRVSDIRKLKWNDLQKSGERI 276 Query: 221 IFSIKTQKTGTIITVELPDGFMKLLAMT--PIGKETFF-INNDKQKMNATQFSIWFKAKA 277 IK QKT + + + D +K L G + F + ++ + + A Sbjct: 277 RIEIKMQKTKEPLYLPISDEALKWLPQQNEAKGDDLIFPLTHEG------TINKILQKWA 330 Query: 278 TKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 AGV + S H R AT+ GA + + G K + + Y K D+ + Sbjct: 331 KDAGVIKHISFHVARHTHATMMLTLGADLYTVSKLLGHKNIATTQIYAKIVDKKK 385 >gi|312880071|ref|ZP_07739871.1| integrase family protein [Aminomonas paucivorans DSM 12260] gi|310783362|gb|EFQ23760.1| integrase family protein [Aminomonas paucivorans DSM 12260] Length = 308 Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats. Identities = 40/270 (14%), Positives = 89/270 (32%), Gaps = 28/270 (10%) Query: 85 GSLAVNSRISFES---YFDQIIRKSGD--FDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139 + ++ ++ S +F+ + G + ++ + SS + Sbjct: 33 RGASEHTLRAYRSDLTHFEDFCARRGKPPCPPEENELTLFLRELQRQGLAASSVQRRAAC 92 Query: 140 MRVLFKWAVRQEYVAINPCLS---VERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQP 192 +R ++ Q P S + P R + T+ ++ + + Sbjct: 93 LRSFLRFLQEQGE----PAASREPLSLPDRPAPLPQILTEGEVGRLLETCDGSASLDLRD 148 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-ELPDGFMKLLAM---- 247 R FE + GLR S++C ++ + +++ Q G + L K + Sbjct: 149 RALFELIYGCGLRASEACSLRLRDVDFTGGTLRVQGKGNKTRIVPLLGEVRKAVERYLAA 208 Query: 248 ----TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISADA 300 P E ++ +++ + + + +AG+ S H +R AT Sbjct: 209 GRGEAPGDPEALLLSRNRRPLRREDLWRIVRRRGVQAGIPSSRLHPHILRHSFATHLLRH 268 Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIR 330 G L + G ++ E YT +R Sbjct: 269 GMDLRTLQSLLGHASLGTTEKYTHFDQELR 298 >gi|300775996|ref|ZP_07085855.1| tyrosine recombinase XerC [Chryseobacterium gleum ATCC 35910] gi|300505129|gb|EFK36268.1| tyrosine recombinase XerC [Chryseobacterium gleum ATCC 35910] Length = 306 Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats. Identities = 45/274 (16%), Positives = 97/274 (35%), Gaps = 27/274 (9%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQII----RKSGDFDYRKITTKHIRSGVESRKH 128 ++ ++ + + + ++ S++ + R + K K IR+ + Sbjct: 12 MLEKFLEYLEFEKRYSPHTVTSYKKDLEDFSHFFLRTESSDNLAKADKKIIRNFIVELSE 71 Query: 129 ---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ----- 180 + S + L+S+R + + ++ + ++P + K E P +KE+M Sbjct: 72 HNISKRSINRKLSSLRSFYLFLLKIGEIKVSPTEGISSLKFYAEKQIPMSKEEMADLNDR 131 Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELP 238 F+ + E L +G+R ++ C +++ I + + V + Sbjct: 132 VFEQVHDV--LEKCIMEVLYQTGMRKAELCGLIFENVDLYGKELKIIGKGNKERV-VPIS 188 Query: 239 DGFMKLL-------AMTPIGKETFFINNDKQKMNATQFSIWFKAKA--TKAGVNKSAHGV 289 +LL K FF+N +K+N + KS H + Sbjct: 189 SELAELLTSYLEIRNPQTEYKSYFFVNKKGKKLNEKFVYVVVNKYLSLITTKEKKSPHIL 248 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYT 323 R AT D GA ++ G ++ + YT Sbjct: 249 RHSFATHVLDNGAEISKVKKILGHSSLASTQVYT 282 >gi|298529953|ref|ZP_07017355.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1] gi|298509327|gb|EFI33231.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1] Length = 312 Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats. Identities = 43/266 (16%), Positives = 85/266 (31%), Gaps = 28/266 (10%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDF--------DYRKITTKHIRSGVESRKHTPSSAIQF 136 + + ++ Q D + + + SS + Sbjct: 23 KGFSGATLQAYSKDLLQWEEFLQTRNKTCASPQDIVRADVHAFLVQMHKLNLSKSSMARK 82 Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQFKSFWSEGSQP 192 L+S+R F++ +Q+ + NPC V PK++ + +Q ++ Sbjct: 83 LSSLRTFFRFLQKQKIIQQNPCTGVRNPKQEKPQPGVLNVDQALEMVQAQLEPSPRNTRD 142 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-----ITVELPDGFMKLLAM 247 E L SGLR S++ + + ++ Q G +T + + +A+ Sbjct: 143 LALAEVLYGSGLRVSEALSLDLDDVDQGQSLVRVQGKGRKERLAFLTRPGLERLSQYIAL 202 Query: 248 TPI-----GKETFFINNDKQKM-NATQFSIWFKA---KATKAGVNKSAHGVRKFSATISA 298 ++ F+ ++ I + A GV S H +R AT Sbjct: 203 RHAFEPDLREKALFLGMRGGRLHRREAVRIIQRLGQIFARAQGV--SPHTLRHSFATHML 260 Query: 299 DAGATAHELMATYGWKTVDQAETYTK 324 AGA + G + + YT Sbjct: 261 QAGADLRIVQELLGHSRISTTQRYTH 286 >gi|17548311|ref|NP_521651.1| site-specific tyrosine recombinase XerC [Ralstonia solanacearum GMI1000] gi|34222935|sp|Q8XTL6|XERC2_RALSO RecName: Full=Tyrosine recombinase xerC 2 gi|17430557|emb|CAD17241.1| probable tyrosine recombinase xerc 2 protein [Ralstonia solanacearum GMI1000] Length = 347 Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats. Identities = 48/301 (15%), Positives = 99/301 (32%), Gaps = 35/301 (11%) Query: 59 EYINSPRKKPTTLKWLISEYRKSAHWGSL-----AVNSRISFE---SYFDQIIRKSGDFD 110 + ++ L L+ AH+ +L + ++ + F + G Sbjct: 2 KPAGPRKRAVDPLAHLVLTRYMEAHFEALLVTGYSADTVRARRISIRRFIVWCEERGIAQ 61 Query: 111 YRKITTKHIRSGVESR--KHTPSSAIQFLTS-------MRVLFKWAVRQEYVAINPCLSV 161 +T + P+ A L S ++ FKW R+ ++ NP + Sbjct: 62 PADVTRAVLERYQRHLFYYRKPNGAPLTLGSQHGALAPLKTWFKWLARENHILYNPASEL 121 Query: 162 ERPKRKTEGIRP-WTKEDMQQFKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQH 216 + PK R + ++++ + G + R E L +G+R + + Sbjct: 122 DLPKLPKHLPRAILSVQEVEAILAEADPATPYGLRDRAMLELLYSTGIRRMEVAGLALYD 181 Query: 217 LQ--NNIFSIKTQKTGTIITVELPDGFMKLLAM---------TPIGKETFFINNDKQKMN 265 + + ++ K V + + L +E F+ + + ++ Sbjct: 182 VDATRRLAFVRDGKGAKDRVVPVGVRALAWLDRYLLEARPQLIVAEREALFVTDYGEPVS 241 Query: 266 ATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 + K AG+ + H +R AT +AGA L A G ++ E YT Sbjct: 242 PEYVASRVKRYMEFAGIQKPGATHLLRHAMATHMLEAGADVRVLQALLGHAQLNTTEIYT 301 Query: 324 K 324 Sbjct: 302 H 302 >gi|65317106|ref|ZP_00390065.1| COG0582: Integrase [Bacillus anthracis str. A2012] Length = 272 Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats. Identities = 39/261 (14%), Positives = 92/261 (35%), Gaps = 23/261 (8%) Query: 99 FDQIIRKSGDFDYRKITTKHIRSGVE---SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAI 155 + D + T HI+ V+ S + + S+R +K+ V +EYV++ Sbjct: 5 ITYLNEHHEVNDVEDVATFHIKKLVQHQISLGKKANYINTLIKSLRSFYKYLVVEEYVSV 64 Query: 156 NPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRLAFEFLLYSGLRCSDSCR 211 N ++ K E I+ +T +++ + + ++ ++ + +G+R S+ Sbjct: 65 NIMNKIKLLKEDVEVIKTFTDDEVAKMIEAYDFKTYLNARNKVIIAMFVDTGMRMSELIN 124 Query: 212 AGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL-----------AMTPIGKETFFINND 260 + + IK K V + K + + + +F++ Sbjct: 125 LQSSWIYDTSLRIK-GKGSKWRHVPMSLMLKKYMIRYERIKAKYFEKKALEHDNYFLSRA 183 Query: 261 KQKMNATQFSIWFKAKATKAG----VNKSAHGVRKFSATISADAGATAHELMATYGWKTV 316 + + Q K +AG + S H VR ++ + G + G + + Sbjct: 184 GKPICTVQIENIVKIAGLRAGVREDIRCSPHTVRHYAIQSNLRNGLDLYSCSKIAGHENI 243 Query: 317 DQAETYTKGADRIRLGIKNSR 337 + Y +G + + + Sbjct: 244 QVTKRYLQGLEMENILEMAQK 264 >gi|326539202|gb|ADZ87417.1| phage integrase [Brucella melitensis M5-90] Length = 116 Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats. Identities = 26/115 (22%), Positives = 50/115 (43%), Gaps = 2/115 (1%) Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290 + + + ++L TP ET + + + + A + K + HG+R Sbjct: 1 MFLPITPILSEVLEATPRQGETVLVTAYGEPFSPKSLTGRMADWTASAKLPKGFTLHGLR 60 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDS 345 K I A+ GA+ ++M T+G + AE YT+ A++ RL R+ + + Sbjct: 61 KTLGKILAEGGASTRQIMDTFGHDDIAHAELYTREAEQARLATDGMSRVVRLKRN 115 >gi|253774276|ref|YP_003037107.1| lambda integrase [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253325320|gb|ACT29922.1| lambda integrase [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|313848583|emb|CAQ31222.2| enterobacteria phage lambda, integration protein [Escherichia coli BL21(DE3)] Length = 307 Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats. Identities = 51/290 (17%), Positives = 97/290 (33%), Gaps = 17/290 (5%) Query: 7 LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMS---ALTGSTPKREYINS 63 LPP + R+ Y G+ L A + +G K Sbjct: 12 LPPNLY---IRNNGYYCYRDPRTGKEFGLGRDRRIAITEAIQANIELFSGHKHKPLTARI 68 Query: 64 PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123 TL + Y K + + I++ S I R D ITTK I + + Sbjct: 69 NSDNSVTLHSWLDRYEKILASRGIKQKTLINYMSKIKAIRRGLPDAPLEDITTKEIAAML 128 Query: 124 ESRKH--TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 +SA +++ F+ A+ + ++ N + K + R E ++ Sbjct: 129 NGYIDEGKAASAKLIRSTLSDAFREAIAEGHITTNHVAATRAAKSEVRRSRLTADEYLKI 188 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE----- 236 +++ S RLA E + +G R D C + + ++ KTG I + Sbjct: 189 YQAAESSPCWLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAIPTALHI 248 Query: 237 ----LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282 + +G ET + ++ +++ S +F +G+ Sbjct: 249 DALGISMKETLDKCKEILGGETIIASTRREPLSSGTVSRYFMRARKASGL 298 >gi|182420240|ref|ZP_02951470.1| tyrosine recombinase [Clostridium butyricum 5521] gi|237666087|ref|ZP_04526075.1| tyrosine recombinase [Clostridium butyricum E4 str. BoNT E BL5262] gi|182375938|gb|EDT73529.1| tyrosine recombinase [Clostridium butyricum 5521] gi|237659034|gb|EEP56586.1| tyrosine recombinase [Clostridium butyricum E4 str. BoNT E BL5262] Length = 323 Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats. Identities = 38/216 (17%), Positives = 86/216 (39%), Gaps = 17/216 (7%) Query: 132 SAIQFLTSMRVLFKWA-VRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 + + + ++ F++ ++ + + C ++ERPK K + + + + + + Sbjct: 96 TRRRKIACLKSFFRFLYLKLHMIDTDLCENLERPKAKPKLPVYLKENECVSLLNNITGRN 155 Query: 191 --QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-----------ITVEL 237 + R + +GLR S+ C + ++++ + + + V L Sbjct: 156 IVRDRCIITLFINTGLRLSELCSINISSIKDDTLVVLGKGNKERYIYLNESCLSQLEVYL 215 Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSAT 295 K + + ++ F++ KQ++N A ++K SAH +R AT Sbjct: 216 RYRSEKYIPIKEGHEDALFLSEQKQRINPRSVENIVVKAVKSACLDKHYSAHKLRHTCAT 275 Query: 296 ISADAGATAHELMATYGWKTVDQAETYTK-GADRIR 330 + AGA + G ++V + YT D+IR Sbjct: 276 LLYKAGADIRSIQTLLGHESVATTQIYTHVDVDQIR 311 >gi|313901872|ref|ZP_07835292.1| tyrosine recombinase XerD subunit [Thermaerobacter subterraneus DSM 13965] gi|313467865|gb|EFR63359.1| tyrosine recombinase XerD subunit [Thermaerobacter subterraneus DSM 13965] Length = 321 Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats. Identities = 41/262 (15%), Positives = 87/262 (33%), Gaps = 22/262 (8%) Query: 85 GSLAVNSRISFESYFDQII-----RKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139 LA ++ ++ R+ + +E + ++A + L + Sbjct: 28 RGLAAHTLAAYRRDLADFAAFAAARQVEPAGVTRPLILAYLHQLERAGRSRATAARRLAA 87 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRLA 195 +R F++ + V +P + P+ R +++++ G + R Sbjct: 88 LRGFFRYLASEGKVEHDPAEGMATPRGGRPLPRVLAVDEVERVLELPQPASPAGLRDRAV 147 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLA-------- 246 E L +GLR S+ + L + ++ K G V + ++ Sbjct: 148 LELLYATGLRVSELVGLDLDDLLLDHGLLRCRGKGGKERVVPVAAPAVEATRQYLARGRP 207 Query: 247 --MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302 G+ F+N +++ + A +AGV + S H +R AT GA Sbjct: 208 ALARRPGQRALFLNQRGGRLSRQWVWHLLRRAARRAGVPRAVSPHTLRHSFATHLLAGGA 267 Query: 303 TAHELMATYGWKTVDQAETYTK 324 + G + + YT Sbjct: 268 DLRAVQELLGHADISTTQIYTH 289 >gi|238765556|ref|ZP_04626468.1| Integrase [Yersinia kristensenii ATCC 33638] gi|238696219|gb|EEP89024.1| Integrase [Yersinia kristensenii ATCC 33638] Length = 355 Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats. Identities = 57/336 (16%), Positives = 116/336 (34%), Gaps = 25/336 (7%) Query: 7 LPPFVTKERTRHGKIIYYFRKGHGRRI---RLPYPHESTFIPAYMSALTGSTPKREYINS 63 LPP + R+ Y G+ R+ + I A + + + + S Sbjct: 12 LPPNLY---VRNNGYYSYRDPRTGKEYGLGRIKRDAVNQAIEANLQLMDNVSARLIERIS 68 Query: 64 PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123 WL Y K L + + + + ITTK I + Sbjct: 69 SDSAMLFHDWL-DHYAKIIDARGLKPKTLKEYRCKLRTLHSTIRNVPIDSITTKDIAGVL 127 Query: 124 ESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 + A Q + +F+ A+ + Y++ NP + + P+ + + R + + Sbjct: 128 TPYIVAGKAAMAKQTRMLLLDIFREAIAEGYISSNPVDATKNPRSEIKRSRLSLDDYKEI 187 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241 FKS L+ E L +G R SD + +++ + ++ QK+G + +++ Sbjct: 188 FKSSLKLQPWIPLSMEIALLTGQRVSDISKMKWSDIRDGMLWVEQQKSGAKLALDVNLSL 247 Query: 242 MKLL----------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-----SA 286 L G + +++K +++ T S F +G++ S Sbjct: 248 NALGISFNETLIRCKSQFGGCDNLIASHNKLQLSTTAISRGFARARDLSGLSWDKAPPSF 307 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 H +R SA + + + + G K+ Y Sbjct: 308 HELRSLSARLYTEEKGSEF-VQRLLGHKSSIMTAKY 342 >gi|258516772|ref|YP_003192994.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771] gi|257780477|gb|ACV64371.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771] Length = 389 Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats. Identities = 52/343 (15%), Positives = 109/343 (31%), Gaps = 54/343 (15%) Query: 52 TGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFD 110 + K +YI + T K ++ +S LA + ++ + +I+ G Sbjct: 50 SAEVQKGQYIAPSKL---TFKEFSQKWLESK--KDLAPKTLYRYKEILNSRILPAMGHLK 104 Query: 111 YRKITTKHIRSGVESRKH------------TPSSAIQFLTSMRVLFKWAVRQEYVAINPC 158 I HI + + +P++ + + +F AV+ + + NP Sbjct: 105 IEDIKPFHIMQFYGNLQEPGIREDGKEGTLSPATVLYHHRLLTNIFNAAVKWQIILTNPA 164 Query: 159 LSVERPKRKTEGIRPWTKEDMQQFKSFWSE-GSQPRLAFEFLLYSGLRCSDSCRAGVQHL 217 L VE PK K + +ED S E + + L GLR + + + Sbjct: 165 LRVEAPKAKKHKATSYEEEDTAALLSALEEQPLKFQAIVYIALGCGLRRGEIMGLEWKDI 224 Query: 218 QN--NIFSIKTQ--------------KT-GTIITVELPDGFMKLLA---------MTPIG 251 ++ K + + +P M LL +G Sbjct: 225 DLTKGTLEVRQSSQYLPGHGTFAKSPKNESSERIIAVPTETMSLLKQHRVQQNEQRLQVG 284 Query: 252 K-----ETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAH 305 + F D + M+ + WF + HG+R +A+ AG Sbjct: 285 GLWQASDRLFTTWDGKPMHPDSITKWFSGFLKNNNLSPLPFHGLRHTAASYMIKAGIPLK 344 Query: 306 ELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSVVDSDD 347 + + G + + Y + + + +++ ++ + Sbjct: 345 NIASRLGHSSPNTTLNIYAHS--FKSVDAEAANKMNDILTTRK 385 >gi|227504796|ref|ZP_03934845.1| site-specific tyrosine recombinase XerC [Corynebacterium striatum ATCC 6940] gi|227198646|gb|EEI78694.1| site-specific tyrosine recombinase XerC [Corynebacterium striatum ATCC 6940] Length = 299 Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats. Identities = 41/271 (15%), Positives = 87/271 (32%), Gaps = 21/271 (7%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE---SRKHTPSSAIQFLTSMR 141 + + + S + R D + +R+ + ++ + ++ + + R Sbjct: 27 RGRSAATVKGYRSDLRDLARSVPD--FASFDLNALRAWLGEAVAQGKSRATLARRTAAAR 84 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR-----LAF 196 WAVR+ ++ + + PK + + + + + Sbjct: 85 AFSTWAVREGHLQADVAARLVSPKVGKHLPKVLAATEAGELVGNAASHDEVHFLRDSAML 144 Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIITVELPDGFMKLLAM-------- 247 E L +G+R ++ V L + ++ T K V D LA Sbjct: 145 ELLYATGMRVAELVGLDVGDLDLHRRTALVTGKGNKQRVVPFGDAASDALATWIEKGRLQ 204 Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAG-VNKSAHGVRKFSATISADAGATAHE 306 + F+ +++ Q + A G + HG+R +AT + GA Sbjct: 205 LAGDTDAVFVGTRGGRIDQRQVRRVVEKAAQITGATGLTPHGLRHTAATHLLEGGADLRV 264 Query: 307 LMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 + G ++ + YT RL SR Sbjct: 265 VQELLGHSSLQTTQVYTH-VSAKRLKDAYSR 294 >gi|332112212|gb|EGJ12188.1| tyrosine recombinase XerC subunit [Rubrivivax benzoatilyticus JA2] Length = 313 Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats. Identities = 43/270 (15%), Positives = 88/270 (32%), Gaps = 31/270 (11%) Query: 85 GSLAVNSRISFESYFDQI--IRKSGDFDYRKITTKHIRSGVESRK---HTPSSAIQFLTS 139 LA + + ++ + + R H+R + + P S L++ Sbjct: 20 RRLAPRTLALYRDALGRLAASAAADGVELRAAQPHHVRRWMAQLRTAGLAPRSIALVLSA 79 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA---- 195 R L++W R+ V NP ++ PK + + +E RLA Sbjct: 80 WRGLYRWWGREGLVPANPVDGLKAPKTGKPLPKALPVDQAVALAEHENEDGDARLAARDH 139 Query: 196 --FEFLLYSGLRCSDSCRA---------GVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244 E L GLR + G ++ + K +V + ++ Sbjct: 140 AIVELLYGCGLRIGELLALDLAPSAGAAGWIDAEDASAHV-LGKGRKRRSVPVGAKALEA 198 Query: 245 LAM--------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294 LA G+ F++ ++++ K A +AG+ + H +R A Sbjct: 199 LAAWLAVRGQLAAAGEPALFVSRRGERLSQGALRARLKQIALQAGLPTHVHPHMLRHSYA 258 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTK 324 + + + G ++ + YT+ Sbjct: 259 SHLLQSSGDLRAVQELLGHASISTTQVYTQ 288 >gi|332042981|gb|EGI79179.1| integrase family protein [Lacinutrix algicola 5H-3-7-4] Length = 296 Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 42/276 (15%), Positives = 93/276 (33%), Gaps = 21/276 (7%) Query: 70 TLKWLISEYRKSAHWGSLA-VNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR-- 126 +LK + ++ L E++ + + + IRS + Sbjct: 2 SLKAFVDYLELERNYSQLTIKAYSKDIEAFQKYLKKNHETTTIKTANYSQIRSWIVQLVE 61 Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 K + + + ++++ +K+ ++ E + NP + K + P+++ ++ Sbjct: 62 SKISNRTINRKISALNTYYKFLLKIEQLKTNPLAKHKALKTSKKIQVPFSQTEVAMAIDD 121 Query: 186 WSE-----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPD 239 G + +L E +G+R + ++ + ++K K V L D Sbjct: 122 LQHENNFKGLRNKLIIELFYSTGIRRIELVNLKIKDINQANKTLKVLGKRNKERYVPLLD 181 Query: 240 GFMKLLA---------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKA--GVNKSAHG 288 K + +E F+ K+ T + A V KS H Sbjct: 182 SVNKTINQYIEKRQELKNIKDQEYLFLTKRGVKIYETLVYRIINEYFSLASNKVKKSPHI 241 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 +R AT + GA + + G ++ + YT Sbjct: 242 LRHSFATHLLNQGADLNAVKELLGHSSLAATQVYTH 277 >gi|71905836|ref|YP_283423.1| tyrosine recombinase XerC subunit [Dechloromonas aromatica RCB] gi|71845457|gb|AAZ44953.1| tyrosine recombinase XerC subunit [Dechloromonas aromatica RCB] Length = 295 Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 36/261 (13%), Positives = 89/261 (34%), Gaps = 21/261 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR---SGVESRKHTPSSAIQFLTSMR 141 L+ ++ ++ +++ +GD + H+R + + + S + L++ R Sbjct: 15 RRLSAHTVSNYRRDLQKLLAAAGDIPLASLQVHHLRRFVAQLHGQGLAGRSLARALSAWR 74 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-----GSQPRLAF 196 F W + V NPC + PK + + ++ + + ++ F Sbjct: 75 GFFHWLGERGMVKANPCDGIRPPKSPRMLPKALSVDETSRLLMPVDDDDPVQAARDLAMF 134 Query: 197 EFLLYSGLRCSDSCRAGVQHLQN--NIFSIKT-QKTGTIITVELPDGFMKLLAM------ 247 E SGLR ++ + L + + ++ K + V + + LA Sbjct: 135 ELFYSSGLRLAELVALDCEALDDIAHESEVRVLGKRNKLRLVPVGSKAREALAAWAAVRN 194 Query: 248 --TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGAT 303 ++ F+ +++ +A G+ + H +R A+ + Sbjct: 195 ELAKPEEKALFVGQRGGRISPRMVEARLARRAVLLGLPTHVHPHMLRHSFASHVLQSSGD 254 Query: 304 AHELMATYGWKTVDQAETYTK 324 + G ++ + YT Sbjct: 255 LRAVQEMLGHASIASTQVYTH 275 >gi|95929339|ref|ZP_01312082.1| phage integrase [Desulfuromonas acetoxidans DSM 684] gi|95134455|gb|EAT16111.1| phage integrase [Desulfuromonas acetoxidans DSM 684] Length = 297 Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 47/262 (17%), Positives = 92/262 (35%), Gaps = 22/262 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKS-GDFD------YRKITTKHIRSGVES--RKHTPSSAIQ 135 +LA +++ ++ G+ + +R + + + + + Sbjct: 16 RNLASHTQTAYLRDVQAFCDFICGEHREQLKTLLPAVEKHTLRRWMAQLLKNNKKVTVAR 75 Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----Q 191 + S+R + + RQ +V NP L V P+ + + M + + + Sbjct: 76 KVASIRSFYSFLQRQGHVEHNPALQVRLPRVERYLPTTLDVDYMYHLLDAPGDSTLQSLR 135 Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVEL----PDGFMKLLA 246 R AFE L SGLR + V L + ++ K G V + M L Sbjct: 136 DRAAFELLYSSGLRVGELVALNVADLDFDQALVRVLGKGGKQRIVPVGSKALQALMAYLE 195 Query: 247 MTPI--GKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGA 302 + E +N +++A K K + G+ + H +R AT D GA Sbjct: 196 RRGVTERDEPLLVNRQGTRLSARTVQRNLKKKLLQLGLPTTATPHSLRHSFATHLLDEGA 255 Query: 303 TAHELMATYGWKTVDQAETYTK 324 + G +++ + YT+ Sbjct: 256 DLRAIQEMLGHQSLSTTQKYTQ 277 >gi|160895946|ref|YP_001561528.1| integrase family protein [Delftia acidovorans SPH-1] gi|160361530|gb|ABX33143.1| integrase family protein [Delftia acidovorans SPH-1] Length = 412 Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 56/305 (18%), Positives = 97/305 (31%), Gaps = 27/305 (8%) Query: 44 IPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-I 102 + A + +K T+ L ++ + ++R ++ D+ I Sbjct: 86 LAQEWLAQVRRGGDPAADKAAARKAPTVTELCVKFMEDHSKQRNKPSTRRGYQGVIDRCI 145 Query: 103 IRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVA--INPCLS 160 + G + + + ++ H P+ A + + MR +F A Y NPC Sbjct: 146 VPFLGRIKVQDVKRPDVAGAMKKMAHKPAEANRAFSVMRKMFNLAEVWGYRPDGTNPCRH 205 Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWS-----------EGSQPRLAFEFLLYSGLRCSDS 209 V + + EDM + RL FEF R S+ Sbjct: 206 VP-VYPDGKATHLISDEDMGKLFRHLDGIEAEGLENYVIPLAIRLQFEFA----GRRSEI 260 Query: 210 CRAGVQ--HLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFI----NNDKQK 263 L N KTG + L + +LL+ P ++ N+ + Sbjct: 261 ISLEWAWVDLDNRRVVWPDSKTGGMSK-PLSEEAYRLLSTAPRRDGCPYVLPSPNDPAKH 319 Query: 264 MNA-TQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 + + W + + HG+R SAT A++G MA KTV Y Sbjct: 320 LTEGEYYGAWCRILKAAGATHVGTHGIRHRSATDIANSGIPVKVGMALTAHKTVAMFMRY 379 Query: 323 TKGAD 327 D Sbjct: 380 VHTED 384 >gi|325280617|ref|YP_004253159.1| Tyrosine recombinase xerC [Odoribacter splanchnicus DSM 20712] gi|324312426|gb|ADY32979.1| Tyrosine recombinase xerC [Odoribacter splanchnicus DSM 20712] Length = 307 Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 36/218 (16%), Positives = 70/218 (32%), Gaps = 22/218 (10%) Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 R T S + L+S+R F++ VR+ + +P V PK M + Sbjct: 76 RPMTARSVRRKLSSLRTYFRYLVREGKLTEDPTEIVVAPKMGKRLPVFVPDYQMDEVLDK 135 Query: 186 WS-----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPD 239 + + R+ Y+G+R S+ ++ + I+ K V + Sbjct: 136 HASDKDFANIRDRMVLMTAYYTGMRRSELVALKLEDVDLEGAVIRVNGKGDKQRIVPMLP 195 Query: 240 GFMKLLAM--------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-----NKSA 286 L + + F+ + + +F ++ G +S Sbjct: 196 ELAGDLRIYLNKREELVGEKHQFVFVTDKGKP-VYDKF--IYRLAVKYLGEVTSLKKRSP 252 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R AT + GA + G + + YT Sbjct: 253 HVLRHSFATALLNNGACIEAIRELLGHAGLAATQIYTH 290 >gi|309751724|gb|ADO81708.1| Site-specific tyrosine recombinase XerC [Haemophilus influenzae R2866] Length = 295 Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 40/260 (15%), Positives = 89/260 (34%), Gaps = 21/260 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITT------KHIRSGVESRKHTPSSAIQFLT 138 ++ ++ +++ D I+ D T + I + + + S L+ Sbjct: 16 RQMSPHTITNYQHQLDATIKILAQQDIHSWTQVTPSVVRFILAESKKQGLKEKSLALRLS 75 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS---FWSEGSQPRLA 195 ++R + V+Q + +NP + PK+ + E +QQ + + R Sbjct: 76 ALRRFLSFLVQQGELKVNPATGISAPKQGRHLPKNMDGEQVQQLLANDSKEPIDIRDRAI 135 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------ELPDGFMKLLA 246 E + SGLR S+ + + + ++ G V + + Sbjct: 136 LELMYSSGLRLSELQGLDLNSINTRVREVRVIGKGNKERVVPFGRYASHAIQEWLKVRAL 195 Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATA 304 P G E F++ +++ + + G+N + H +R AT +A + Sbjct: 196 FNPKG-EALFVSQLGNRISHRAIQKRLETWGIRQGLNSHLNPHKLRHSFATHMLEASSDL 254 Query: 305 HELMATYGWKTVDQAETYTK 324 + G + + YT Sbjct: 255 RAVQELLGHSNLSTTQIYTH 274 >gi|251793385|ref|YP_003008113.1| site-specific tyrosine recombinase XerC [Aggregatibacter aphrophilus NJ8700] gi|247534780|gb|ACS98026.1| tyrosine recombinase XerC [Aggregatibacter aphrophilus NJ8700] Length = 295 Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 35/260 (13%), Positives = 84/260 (32%), Gaps = 21/260 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITT------KHIRSGVESRKHTPSSAIQFLT 138 ++ ++ +++ +I+ ++ + + + S L+ Sbjct: 16 RQVSPHTLSNYQRQLVRIVEILQHAGIQQWQQVTPSVVRFVIAQSHKDGLHEKSLALRLS 75 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS---FWSEGSQPRLA 195 ++R + V+ + +NP + PK+ + E +QQ + + R Sbjct: 76 ALRRFLSYLVQLGELKVNPATGISAPKQAKHLPKNIDTEQVQQLLANDSKEPIDIRDRAI 135 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------ELPDGFMKLLA 246 E L SGLR S+ + + + ++ G V + L Sbjct: 136 IELLYSSGLRLSELQGLNLNSINIRVREVRVIGKGNKERVVPLGRYASHAIQQWLKVRLL 195 Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAK--ATKAGVNKSAHGVRKFSATISADAGATA 304 P E F++ +M+ + + + + + H +R AT +A + Sbjct: 196 FNP-KDEALFVSQLGNRMSHRAIQMRLETWGIRQRLNSHLNPHKLRHSFATHMLEASSDL 254 Query: 305 HELMATYGWKTVDQAETYTK 324 + G + + YT Sbjct: 255 RAVQELLGHSNLSTTQIYTH 274 >gi|83589876|ref|YP_429885.1| tyrosine recombinase XerD subunit [Moorella thermoacetica ATCC 39073] gi|83572790|gb|ABC19342.1| tyrosine recombinase XerD subunit [Moorella thermoacetica ATCC 39073] Length = 313 Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 40/264 (15%), Positives = 84/264 (31%), Gaps = 27/264 (10%) Query: 88 AVNSRISFESYFDQII--------RKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139 + + ++ + +Q +++G + + SS + L + Sbjct: 24 SPCTVDAYRADIEQFAAFVAGRAGQEAGPAAVDIWMVRRYLGWLNQLGQQRSSMNRKLAA 83 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK---SFWSEGSQPRLAF 196 +R +++ +R V +P + P+R+ + +M++ + G + R Sbjct: 84 LRAFYRFLLRAGQVQSSPVALLSGPRREKRLPGCLSHAEMEKLLSIPATTPLGLRDRAIL 143 Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-ITVELPDGFMKLL---------- 245 E L SG+R ++ L + G V L +K L Sbjct: 144 ETLYASGIRVAELVGMDQDDLDLVAGYARVLGKGRRERVVPLGRYAVKALENYLHRARPE 203 Query: 246 ---AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300 P F+N+ ++ KA + + S H +R AT + Sbjct: 204 LAARRIPPEPRALFLNHLGGRLTTRGVRERLSHYVEKAALRRGVSPHTIRHTFATHLLEG 263 Query: 301 GATAHELMATYGWKTVDQAETYTK 324 GA + G + + YT Sbjct: 264 GADLRVVQELLGHIRLATTQIYTH 287 >gi|95928516|ref|ZP_01311263.1| phage integrase [Desulfuromonas acetoxidans DSM 684] gi|95135306|gb|EAT16958.1| phage integrase [Desulfuromonas acetoxidans DSM 684] Length = 397 Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 41/258 (15%), Positives = 89/258 (34%), Gaps = 14/258 (5%) Query: 101 QIIRKSGDFDYRKITTKHIRSGVESRKH--TPSSAIQFLTSMRVLFKWAVRQEYVAINPC 158 +II+ G I+ + + + + ++ + L+ + +FK A+ + + NPC Sbjct: 135 RIIKTFGATPLADISKREVMLFHQQVCDETSGTTGNRHLSLLSSIFKLALEYDLLEKNPC 194 Query: 159 LSVERPKRKTEGIRPWTKEDMQQFKSFW--SEGSQPRLAFEFLLYSGLRCSDSCRAGVQH 216 +++ K R +++ +F A L+ G+R S+ + Sbjct: 195 RGIKKAKENRSRDRFLQEDEYTRFIQVLQTKLDQPSACAIFLLIALGMRKSELLSLRWED 254 Query: 217 LQ--NNIFSIKTQKTGTIITVEL----PDGFMKLLAMTPIGKETFFINNDKQKMN-ATQF 269 + + ++ K G V L K+ F + + Sbjct: 255 VSLADRHLHLRDTKNGESRYVALNSVSHGLLTKMKQKRKASNPWVFPSRTSSESGHLQDV 314 Query: 270 SIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-- 326 F ++ + H +R+ A+ +AG + G K++ + Y K A Sbjct: 315 RRTFATVCRESKITGLRIHDLRRSHASHLLNAGVDISIVGKILGHKSLKSTQIYAKVATS 374 Query: 327 DRIRLGIKNSRRISSVVD 344 R SR+I V++ Sbjct: 375 SLARTSEIASRKIEEVMN 392 >gi|320093555|ref|ZP_08025446.1| recombinase XerD [Actinomyces sp. oral taxon 178 str. F0338] gi|319979482|gb|EFW10953.1| recombinase XerD [Actinomyces sp. oral taxon 178 str. F0338] Length = 249 Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 40/214 (18%), Positives = 75/214 (35%), Gaps = 21/214 (9%) Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----- 186 S + ++R L +A+RQ V + V PK+ + + + + + + Sbjct: 1 SVARASAAIRGLHAYALRQGRVGADAAAEVRAPKQGSHLPKALSVDQVSRLLDAAHSAPG 60 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKT-QKTGTIITVELPDGFMK 243 + G + E L +G R S++ V + + ++ K V L Sbjct: 61 AAGLRDAALLELLYATGARVSEAVGLAVDDIDLDDEAPVVRLFGKGRKERLVPLGSYAKD 120 Query: 244 LL-----------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290 L A G F+N M+ + A+ AG+ S H +R Sbjct: 121 ALGAYLVRGRPELAARGRGSHAVFLNKRGAAMSRQSAWETIRRAASAAGLEAGVSPHTLR 180 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK 324 AT + GA+ ++ G +V + YT+ Sbjct: 181 HSFATHLLEGGASVRDVQELLGHASVQTTQIYTR 214 >gi|126434558|ref|YP_001070249.1| site-specific tyrosine recombinase XerC [Mycobacterium sp. JLS] gi|166918889|sp|A3PXY1|XERC_MYCSJ RecName: Full=Tyrosine recombinase xerC gi|126234358|gb|ABN97758.1| tyrosine recombinase XerC subunit [Mycobacterium sp. JLS] Length = 300 Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 40/268 (14%), Positives = 93/268 (34%), Gaps = 28/268 (10%) Query: 85 GSLAVNSRISF----ESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT---PSSAIQFL 137 + ++R ++ S F + ++ D +T +R+ + ++ ++ + Sbjct: 16 RGRSDHTRRAYLGDLRSLFAFVDERTPGADLGSLTLPVLRAWLSAQAAAGTARTTLARRT 75 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW--------SEG 189 ++++ WAVR+ +A +P ++ PK + ++ + Sbjct: 76 SAVKTFTAWAVRRGLMASDPATRLQMPKARRTLPAVLRQDQARDALDAANSGAQQGDPLA 135 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAM- 247 + RL E L +G+R S+ C + + + ++ K TV + + L Sbjct: 136 LRDRLIVEMLYATGIRVSELCGLDIDDVDTSRRLLRVLGKGDKQRTVPFGEPAEQALRAW 195 Query: 248 ---------TPIGKETFFINNDKQKMNATQFSIWFKAK--ATKAGVNKSAHGVRKFSATI 296 T + ++++ Q A + HG+R +AT Sbjct: 196 LTSGRPALATAESGPALLLGARGRRLDPRQARTVVHETVGAVAGAPDIGPHGLRHSAATH 255 Query: 297 SADAGATAHELMATYGWKTVDQAETYTK 324 + GA + G T+ + YT Sbjct: 256 LLEGGADLRIVQELLGHSTLATTQLYTH 283 >gi|325511227|gb|ADZ22862.1| site-specific tyrosine recombinase XerC [Clostridium acetobutylicum EA 2018] Length = 326 Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 47/292 (16%), Positives = 91/292 (31%), Gaps = 43/292 (14%) Query: 85 GSLAVNSRISFESYFDQIIR-----------------KSGDFDYRKITTKHIRSGV---- 123 + +R +++ +++ D D I + Sbjct: 19 KGKSKRTRNEYKNDLILMLKYIKVIKYDINTNGIENVDISDIDNDFIKAISLEDLYIFLE 78 Query: 124 ---ESRKHTPSSAIQFLTSMRVLFKWAV-RQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179 + R++ S + + ++R F + +++ + NP +E+PK T Sbjct: 79 YCEDERRNGAYSRARKVAAIRSFFNYLTTKKKILDYNPAQELEKPKLPKRNPVYLTIGQA 138 Query: 180 QQFKSFWSEGSQPR---LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236 F S L G+R S+ C + ++N++ SI K TV Sbjct: 139 NTFLSGIKMNKHYYRNTCIVTLFLNCGMRVSELCNININSIKNDMISII-GKGDKERTVY 197 Query: 237 LPDGFMKLLAMTPIG----------KETFFINNDKQKMNATQFSIWFKAKATKAGVN--- 283 L D + + ++ FI+ +++ K + +N Sbjct: 198 LNDMCIDAINKYIEKERSLQKNIKCQQALFISQKGTRISVRTIENLVKKINEDSKLNINK 257 Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIK 334 + H +R AT AG L G V + YT DR+R Sbjct: 258 LTPHKLRHTFATTMYQAGTDIISLQQLLGHSNVSTTQIYTHVTDDRLREATN 309 >gi|259909796|ref|YP_002650152.1| site-specific tyrosine recombinase XerC [Erwinia pyrifoliae Ep1/96] gi|224965418|emb|CAX56950.1| site-specific tyrosine recombinase [Erwinia pyrifoliae Ep1/96] Length = 351 Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 43/289 (14%), Positives = 102/289 (35%), Gaps = 32/289 (11%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFE---SYFDQIIRKSGDFDYRKITTKHIRSGVESR 126 TL+ L + + + + F G +++ + + Sbjct: 20 TLRQLAESWLAHLVVAGRSPRTVQGYRERVRAFLAWCEPRGITYAPQVSLAVLEAYQRWL 79 Query: 127 KHTPSSAIQ---------FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI-RPWTK 176 + + + LT++R+LF+W +++ + NP + PK + + +++ Sbjct: 80 QGYRRADGKQLVVNSQLGVLTAIRMLFRWLLQRHVILYNPAELLALPKEERRLPAQVFSE 139 Query: 177 ED----MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTG 230 + +Q + G + R E L +G+R ++ + + + +++ K G Sbjct: 140 AETRRVLQSLDAGTPPGLRNRAILELLWSTGIRRTELANLLLSDVDAVRGVVNVRRGKGG 199 Query: 231 TIITVELPDGFMKLLA----------MTPIGKETFFINNDKQKMNATQFSIWF-KAKATK 279 V + + + LA FI++ + + +A + Sbjct: 200 RDRVVPVGNAALMWLARYLKDVRPRLAQRFDSGHLFISHKGTGLAHGTLTAMAGRAIRSG 259 Query: 280 AGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 A + K+ H R AT + GA + A G + ++ + YT+ A Sbjct: 260 AHLKKAGACHIFRHTMATQMLENGADTRHIQAILGHEKLETTQIYTRVA 308 >gi|15004784|ref|NP_149244.1| site-specific tyrosine recombinase XerC [Clostridium acetobutylicum ATCC 824] gi|14994396|gb|AAK76826.1|AE001438_79 Site-Specific Recombinase, Xerd [Clostridium acetobutylicum ATCC 824] Length = 323 Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 47/292 (16%), Positives = 91/292 (31%), Gaps = 43/292 (14%) Query: 85 GSLAVNSRISFESYFDQIIR-----------------KSGDFDYRKITTKHIRSGV---- 123 + +R +++ +++ D D I + Sbjct: 16 KGKSKRTRNEYKNDLILMLKYIKVIKYDINTNGIENVDISDIDNDFIKAISLEDLYIFLE 75 Query: 124 ---ESRKHTPSSAIQFLTSMRVLFKWAV-RQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179 + R++ S + + ++R F + +++ + NP +E+PK T Sbjct: 76 YCEDERRNGAYSRARKVAAIRSFFNYLTTKKKILDYNPAQELEKPKLPKRNPVYLTIGQA 135 Query: 180 QQFKSFWSEGSQPR---LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236 F S L G+R S+ C + ++N++ SI K TV Sbjct: 136 NTFLSGIKMNKHYYRNTCIVTLFLNCGMRVSELCNININSIKNDMISII-GKGDKERTVY 194 Query: 237 LPDGFMKLLAMTPIG----------KETFFINNDKQKMNATQFSIWFKAKATKAGVN--- 283 L D + + ++ FI+ +++ K + +N Sbjct: 195 LNDMCIDAINKYIEKERSLQKNIKCQQALFISQKGTRISVRTIENLVKKINEDSKLNINK 254 Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIK 334 + H +R AT AG L G V + YT DR+R Sbjct: 255 LTPHKLRHTFATTMYQAGTDIISLQQLLGHSNVSTTQIYTHVTDDRLREATN 306 >gi|320352237|ref|YP_004193576.1| integrase family protein [Desulfobulbus propionicus DSM 2032] gi|320120739|gb|ADW16285.1| integrase family protein [Desulfobulbus propionicus DSM 2032] Length = 354 Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 49/296 (16%), Positives = 101/296 (34%), Gaps = 33/296 (11%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--K 127 T + Y N++I + +++ ++IT + + + R Sbjct: 68 TFVDALDRYELEVSNRK-RPNTKIRERTSANRLREHFSGLKLKEITPSLVAAFRDKRLKS 126 Query: 128 HTPSSAIQFLTSMRVLF-----KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 PS+ + L + LF +WA+ + NP ++ +P + +R +K++ + Sbjct: 127 VGPSTVQKDLALLSHLFTIANAEWALDIK----NPVATIRKPAKPDSRLRLLSKDEARHL 182 Query: 183 KSFWSEGSQPRLA--FEFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQKTGTIITVELP 238 + +L + +L++G+R S++ + I + KT V L Sbjct: 183 LETSKQSRNKKLYHFLQLMLHTGMRPSEAAGITWGQIDIDARIIDLTVTKT-KPRRVPLT 241 Query: 239 DGFMKLLAMTPIGK-----ETFFINN-----DKQK--MNATQFSIWFKAKATKAGVNKSA 286 ++LL + F NN ++ F K + + Sbjct: 242 VKAVELLLELMPDQYEKNSFVFLPNNCSETLRRRPNLFFRRAFWNALKKANIE---DFHM 298 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL-GIKNSRRISS 341 H +R +A+ AG L G T+ + YT D +L I + Sbjct: 299 HDLRHTAASYLLMAGVDLRTLADILGHSTMQMVQRYTHLLDDHKLKAIDKIELLGR 354 >gi|330998383|ref|ZP_08322207.1| site-specific recombinase, phage integrase family [Paraprevotella xylaniphila YIT 11841] gi|329568489|gb|EGG50294.1| site-specific recombinase, phage integrase family [Paraprevotella xylaniphila YIT 11841] Length = 391 Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 66/374 (17%), Positives = 119/374 (31%), Gaps = 54/374 (14%) Query: 19 GKIIYY---FRKGHGRRIRL-----PYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70 G+ Y +R GH L P + + + T R+ + +K P Sbjct: 24 GRRSIYLDCYRNGHRSYEYLKLYLVPETDDKSLRLNEAAMRKAETACRKKLRELKKLPAE 83 Query: 71 LKWL------ISEYRKS-AHWGSLAVNSRISFESY----FDQIIRKS-----GDFDYRKI 114 + L IS S W S + S + D++ GD +I Sbjct: 84 NRRLMDTQDCISNKGISILEWLSRFKEIQRSRGVHDIHAIDRLCAILSEMNCGDTKVNEI 143 Query: 115 TTKHIRSGVESRK----------HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV--- 161 + VE K P +A + A+R+ + NP + Sbjct: 144 GKDFCIAFVEYLKTGYKTAKGENLKPKTAFNRQCTFVTALNVAMREGIIPTNPMNLLSHH 203 Query: 162 ERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN- 220 ER K T +++++ + + + + A+ F GLR D + + + Sbjct: 204 ERAKASKGKRDYLTIDEVKRLIATPCKNNMIKNAYLFACNCGLRLGDVRKLKWGDITQDN 263 Query: 221 ---IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET-----FFINNDKQKMNATQFSIW 272 I S+ K+G I + L + + + F + + + Sbjct: 264 DRWILSVIMNKSGKPIHIPLGVQARRWIPGCEDSGKHDTGSLVFEHLPGD----SHINDI 319 Query: 273 FKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 K A AG+ KS H R AT+ GA + + G + + Y + +R + Sbjct: 320 LKIWAADAGIAKSVTYHTARHTFATMLLTLGADLYTVSKLLGHSQIKNTQIYAEIINRRK 379 Query: 331 LGIKNSRRISSVVD 344 + I V D Sbjct: 380 --DEAVNLIDKVFD 391 >gi|291526988|emb|CBK92574.1| Site-specific recombinase XerD [Eubacterium rectale M104/1] Length = 280 Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 42/263 (15%), Positives = 96/263 (36%), Gaps = 22/263 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK---HTPSSAIQFLTSMR 141 +L ++ ++ + + + D +TT + + +K +P + + + +R Sbjct: 16 RNLKDSTIHAYCTSVAHFLNHTA-KDIDALTTDDVDIFLTEKKLSGISPETYNHYHSGIR 74 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY 201 +K +++ + + + R KR + TK ++ + + + Sbjct: 75 FFYKKILKKNWDDDD----IPRMKRDRKLPTVLTKTEISAILDATP-NLKHKAMIATMYS 129 Query: 202 SGLRCSDSCRAGVQHLQN--NIFSIKTQKTGTIITVELPDGFMKLL------AMTPIGKE 253 GLR S+ + I+ K+ + L D +++L P G Sbjct: 130 GGLRVSEVTHLHYDDISRTKKNIHIRDGKSRSDRYTLLADRTLEILTEYWFQCGRPRG-- 187 Query: 254 TFFINND-KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMAT 310 F ++ + +F+ A +AG+ K S H +R A+ ++G + A Sbjct: 188 ILFPSSWTGDYLTKDSVIQFFRESAKRAGIQKHVSTHCLRHSFASHLFESGCDVKYIQAL 247 Query: 311 YGWKTVDQAETYTKGADRIRLGI 333 G + E Y +++ LGI Sbjct: 248 LGHRDPKSTEVYLHVSNKTLLGI 270 >gi|291514360|emb|CBK63570.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301] Length = 368 Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 50/301 (16%), Positives = 111/301 (36%), Gaps = 33/301 (10%) Query: 46 AYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK 105 Y+ + + K+ I T L+ Y + + + D+I + Sbjct: 87 EYIQLVAANKLKQGRIGI----KGTFDTLV--YHLT--------------KYHGDKIALQ 126 Query: 106 SGDFDYRKITTKHIRSGVESRKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE 162 D Y K +++ + + SS TS++++ A++ E V +P SV+ Sbjct: 127 DIDIRYVKGFVQYLSTAIARTSGEVLKSSSQHNIYTSLKIIIHQAIKDELVTSDPTKSVD 186 Query: 163 RPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL----Q 218 P+ T+E++++ + +F F ++GLR SD + + + Sbjct: 187 PPRMVLPHKEHLTEEELKRLIQTPCPKEMVKRSFLFCCFTGLRISDVQKLIWKEVVTTNN 246 Query: 219 NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKAT 278 + + +KT V L + +++ P +E ++ + K + Sbjct: 247 ETYINFRQKKTKIENYVPLSE---NAISVLPSKRENTETDSVFDLPKESTIRKVLKKWVS 303 Query: 279 KAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR-IRLGIKN 335 +G++K + H R AT+ ++G + + G + Y K D+ R + + Sbjct: 304 DSGIDKHITFHCARHTCATLLLNSGVDIYTVKEILGHTDIGTTMQYAKVVDKTKREAVNS 363 Query: 336 S 336 Sbjct: 364 I 364 >gi|27804830|gb|AAO22873.1| integrase [Myxococcus xanthus] Length = 209 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 36/184 (19%), Positives = 62/184 (33%), Gaps = 18/184 (9%) Query: 165 KRKTEGIRPWTKEDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN 220 + + T E+++Q + E G + + E L +GLR S+ C G+ +Q Sbjct: 1 RSARKLPSFLTLEEVEQLLAAPDERTSTGVRDKAMLEVLYATGLRVSELCGLGINDVQLT 60 Query: 221 IFSIKTQKTG-TIITVELPDGFMKLLAM----------TPIGKETFFINNDKQKMNATQF 269 + + G V L ++ + + F+ F Sbjct: 61 AGYLVAKGKGAKERLVPLGSVAIEKVQAYLAESRPAVLGRRKSQALFVTPRGSGFTRQGF 120 Query: 270 SIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 K A KAG+ S H +R AT + GA + G + + YT + Sbjct: 121 WKLLKRYALKAGILKPLSPHKLRHSFATHLVERGADLRAVQQMLGHADLATTQIYTH-VN 179 Query: 328 RIRL 331 RL Sbjct: 180 AARL 183 >gi|304412533|ref|ZP_07394139.1| tyrosine recombinase XerC [Shewanella baltica OS183] gi|307307192|ref|ZP_07586930.1| tyrosine recombinase XerC [Shewanella baltica BA175] gi|304349175|gb|EFM13587.1| tyrosine recombinase XerC [Shewanella baltica OS183] gi|306910431|gb|EFN40862.1| tyrosine recombinase XerC [Shewanella baltica BA175] Length = 306 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 32/271 (11%), Positives = 89/271 (32%), Gaps = 21/271 (7%) Query: 72 KWL--ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD-FDYRKITTKHIR---SGVES 125 +WL Y + L+ ++ ++ ++ + ++ +H + + + Sbjct: 14 QWLQTFERYLSTER--QLSAHTVRNYLYELNRGSDLLPEGVHLLNVSREHWQQVLAKLHR 71 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + +P S L++++ ++ +R+ + +NP + PK+ + + + Sbjct: 72 KGLSPRSLSLCLSAVKQWGEFLLREGVIELNPAKGLSAPKQAKPLPKNIDVDAISHLLDI 131 Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT--------IIT 234 + + E SGLR ++ + +Q ++ ++ G + Sbjct: 132 EGTDPLSLRDKAMMELFYSSGLRLAELAALNLSSVQYDLKEVRVLGKGNKERIVPVGRLA 191 Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAK--ATKAGVNKSAHGVRKF 292 + ++ P F+ ++++ V H +R Sbjct: 192 IAALLNWLNCRKQIPCEDNALFVTEKGKRLSHRSIQARMAKWGQEQALSVRVHPHKLRHS 251 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYT 323 AT +A A + G + + YT Sbjct: 252 FATHMLEASADLRAVQELLGHANLATTQIYT 282 >gi|291524090|emb|CBK89677.1| Site-specific recombinase XerD [Eubacterium rectale DSM 17629] Length = 280 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 42/263 (15%), Positives = 96/263 (36%), Gaps = 22/263 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK---HTPSSAIQFLTSMR 141 +L ++ ++ + + + D +TT + + +K +P + + + +R Sbjct: 16 RNLKDSTIHAYCTSVAHFLNHTA-KDIDALTTDDVDIFLTEKKLSGISPETYNHYHSGIR 74 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY 201 +K +++ + + + R KR + TK ++ + + + Sbjct: 75 FFYKKILKKNWDDDD----IPRMKRDRKLPTVLTKTEISAILDATP-NLKHKAMIATMYS 129 Query: 202 SGLRCSDSCRAGVQHLQN--NIFSIKTQKTGTIITVELPDGFMKLL------AMTPIGKE 253 GLR S+ + I+ K+ + L D +++L P G Sbjct: 130 GGLRVSEVTHLHYDDISRTKKTIHIRDGKSRSDRYTLLADRTLEILTEYWFQCGRPRG-- 187 Query: 254 TFFINND-KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMAT 310 F ++ + +F+ A +AG+ K S H +R A+ ++G + A Sbjct: 188 ILFPSSWTGDYLTKDSVIQFFRESAKRAGIQKHVSTHCLRHSFASHLFESGCDVKYIQAL 247 Query: 311 YGWKTVDQAETYTKGADRIRLGI 333 G + E Y +++ LGI Sbjct: 248 LGHRDPKSTEVYLHVSNKTLLGI 270 >gi|254994614|ref|ZP_05276804.1| integrase/recombinase [Anaplasma marginale str. Mississippi] Length = 267 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 39/256 (15%), Positives = 91/256 (35%), Gaps = 29/256 (11%) Query: 109 FDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168 D + + SR ++P++ + ++++R L+ + + +P +++ K Sbjct: 2 VDASAADLRAYVRSLNSRGYSPATVARRISAIRGLYGFLYGDRIIDGDPAANLDSCKLGR 61 Query: 169 EGIRPWTKEDMQQFK-----SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ----- 218 + T +++ + EG + L SG+R S+ G ++ Sbjct: 62 PLPKVLTVDEVDKLLCAAGSDLSVEGRRTAAIVNILYSSGVRISELINLGFYDIESMLKE 121 Query: 219 ---NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM----------- 264 + + K G + L + + + ++ F + + Sbjct: 122 QRSDVGHLVIKGKAGRERLILLNEVAIASIVAYLAVRDHFIVGQKSESRWLFPGAKFDQC 181 Query: 265 -NATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320 + + KA A AGV+ S H +R AT + G+ + G ++ + Sbjct: 182 ISRQRVGQLLKALAIVAGVDPKRISPHKLRHSFATHLLNNGSNVVFIQKMLGHASLSTTQ 241 Query: 321 TYTKGA-DRIRLGIKN 335 YT A DR++ ++ Sbjct: 242 IYTYVANDRLKEALQT 257 >gi|256587797|gb|ACU98929.1| integrase [Propionibacterium jensenii] Length = 305 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 38/275 (13%), Positives = 88/275 (32%), Gaps = 28/275 (10%) Query: 86 SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA------IQFLTS 139 + + ++ + + + + D ++ + + +A + S Sbjct: 23 RRSPRTVTAYRTDLESLFDHAADNGVTRLAEIDVSALRSWLADGRGAAEAPATLQRHWAS 82 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---------SEGS 190 RV F+WA + + ++P ++ K R + ++ +G+ Sbjct: 83 ARVFFRWACAEGLIGVDPAARLKAAKVPRRLPRTLGVDQARRLLDDAVASASTDDSPQGA 142 Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAM-- 247 + E L SG+R + C + L +++ K TV L D + + Sbjct: 143 RDAAILEVLYGSGIRVGELCGLDLSSLDRARDTLRVLGKGSKERTVPLGDPGWRAIDGWL 202 Query: 248 -------TPIGKETFFINNDKQKMNATQFSIWFKAKATK--AGVNKSAHGVRKFSATISA 298 T + F+ +++ + HG+R AT Sbjct: 203 SRRSEWQTASSGQALFLGARGARIDPRVVRRMVHQHLRSEPGFPDLGPHGLRHAMATHLL 262 Query: 299 DAGATAHELMATYGWKTVDQAETYTK-GADRIRLG 332 + GA + G +++ + YT +R+R Sbjct: 263 EGGADLRTVQEILGHESLATTQIYTHVSTERLRRA 297 >gi|221195834|ref|ZP_03568887.1| tyrosine recombinase XerD [Atopobium rimae ATCC 49626] gi|221184308|gb|EEE16702.1| tyrosine recombinase XerD [Atopobium rimae ATCC 49626] Length = 311 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 40/266 (15%), Positives = 82/266 (30%), Gaps = 23/266 (8%) Query: 85 GSLAVNSRISFESYFDQIIR------KSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLT 138 L+ N+ ++E + + + + + P+S + Sbjct: 18 RGLSHNTLDAYERDLNGYSDWLSSCGIHNPCAVTQQILETYIAELREIGLAPASVERHTA 77 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQFKSFWSEGSQPRL 194 ++R ++ V ++ A +P + R ++E + Q G + + Sbjct: 78 AIRNFHRFLVAEQICATSPADDLSSTARPLRLPDVISREKAAELLDQPFERSPRGIRDKA 137 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGK- 252 E L GLR S+ V+ + + ++ K V + + L G Sbjct: 138 ILEVLYGCGLRVSEVSGLEVRGVLLDEELLRVFGKGSKERVVPIFGTAQEALREYLEGAR 197 Query: 253 ---------ETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGA 302 F+N +++ A G+ N H +R AT + GA Sbjct: 198 GAFLIHGQSPYVFLNRRGGRLSRQWIHTSVAAYGRAVGIENLHPHTLRHSFATHLLEGGA 257 Query: 303 TAHELMATYGWKTVDQAETYTKGADR 328 + G + + YT DR Sbjct: 258 DLRSVQELLGHVDISTTQLYTH-VDR 282 >gi|89902211|ref|YP_524682.1| phage integrase [Rhodoferax ferrireducens T118] gi|89346948|gb|ABD71151.1| phage integrase [Rhodoferax ferrireducens T118] Length = 337 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 44/294 (14%), Positives = 89/294 (30%), Gaps = 43/294 (14%) Query: 73 WLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK--HIRSGVESRKHT 129 L+ Y + LA + + ++ +++ + + HIR V Sbjct: 20 DLVERYLEHVRVEKRLAQRTVELYALDLQKLSQQAAQAGVELLQVQNSHIRRWVAQMNAG 79 Query: 130 PSS---AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 S L+ R + W R+ ++ NP V PK + + + Q SF Sbjct: 80 GRSGRGIALILSGWRGFYVWLGREGLISSNPVQDVRAPKAGKPLPKALSVDQAVQLASFA 139 Query: 187 S------EGSQPRLAFEFLLYSGLRCSDSCRA---------GVQHLQNNIFSIKTQKTGT 231 S ++ E L +GLR + G LQ + K G Sbjct: 140 SGSNDPWLEARDAAMVELLYGAGLRVGELTGLDTVASSSARGWIDLQGGEAHV-LGKGGK 198 Query: 232 IITVE--------LPDGFMKLLAMTPIGKE-----------TFFINNDKQKMNATQFSIW 272 +V + K F+ + +++A Sbjct: 199 RRSVPVGAKAVLAITHWLALRDQALAQAKPGLQGPGGNAQAALFMGRNGTRLSAQSIWQR 258 Query: 273 FKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 + ++ +AG+ H +R A+ + + + G ++ + YT+ Sbjct: 259 LRQRSLQAGLTTPVHPHMLRHSFASHLLQSSSDLRAVQELLGHASITTTQAYTR 312 >gi|49084748|gb|AAT51227.1| PA5280 [synthetic construct] Length = 304 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 39/288 (13%), Positives = 96/288 (33%), Gaps = 24/288 (8%) Query: 85 GSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIR---SGVESRKHTPSSAIQFLT 138 ++ ++ + +I+ K+G D+ + T+ +R + + + + S + L+ Sbjct: 16 RQVSAHTLDGYRRDLLKILALAEKAGLSDWNALDTRSLRTFVARLHQQGQSSRSLARLLS 75 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRL 194 + R L+++ +R+ +P + PK + R + Q E + + Sbjct: 76 ATRGLYQYLLREGRCRHDPANGLSAPKSPRKLPRTLDADRALQLLDGAVEDDFIARRDQA 135 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT-VELPDGFMKLLAM------ 247 E SGLR S+ ++ L ++ + G + + + + L Sbjct: 136 LLELFYSSGLRLSELVGLDLEWLDLKEGLVRVRGKGNRVRELPVGKAARQALEAWLPLRT 195 Query: 248 -TPIGKETFFINNDKQKMNATQFSIWFKAK-ATKAGVNKSAHGVRKFSATISADAGATAH 305 FI +++ + + + G H +R A+ ++ Sbjct: 196 QAAPEDGAVFIGRSGKRLTPRAIQLRVRQAGVRELGQRLHPHMLRHSFASHLLESSGDLR 255 Query: 306 ELMATYGWKTVDQAETYT-----KGADRIRLGIKNSRRISSVVDSDDP 348 + G + + YT A ++R + +DP Sbjct: 256 AVQELLGHADIATTQIYTHLDFQHLASVYDRAHPRAKRKGNADGGNDP 303 >gi|73663256|ref|YP_302037.1| integrase [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|72495771|dbj|BAE19092.1| integrase [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 349 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 40/290 (13%), Positives = 96/290 (33%), Gaps = 17/290 (5%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK-- 127 T ++ + ++ +++ +ES + I + I + + Sbjct: 60 TFADYFYQWYEVNKLPHVSESTKRHYESAYKHIKDHFRHKLLKDIKRTEYQKFLNEYGLT 119 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE---RPKRKTEGIRPWTKEDMQQFKS 184 H+ + + + +R F A+ + YV NP E KTE ++ + + ++ K Sbjct: 120 HSYETIRKLNSYIRNAFDDAIHEGYVIKNPTYKAELHASVPAKTEEMKFINESEFKKLKH 179 Query: 185 FWS-EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPD-- 239 ++ + + L L +G R S+ + + L NN ++ KT T + D Sbjct: 180 YFEQKNTTSSLVLLVALTTGGRFSEIAKLKREDLDIKNNKIHLRGTKTETSDRIISIDTV 239 Query: 240 ---GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSAT 295 + P + D + + + + + + + H +R + Sbjct: 240 TMKRIQSFIDSRPTNISGYIFTVDGKTITNAAVNKVLRKACANLNIKEITIHSLRHSFCS 299 Query: 296 ISADAGATAHELMATYGWKTVDQAE-TYTKGADR--IRLGIKNSRRISSV 342 I G + + G + Y+ R K + + ++ Sbjct: 300 ILIHHGFSILYISKHLGHSNPATTQSIYSHLLQETYEREDEKAMKLLETI 349 >gi|301169393|emb|CBW28993.1| site-specific tyrosine recombinase [Haemophilus influenzae 10810] Length = 295 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 39/260 (15%), Positives = 88/260 (33%), Gaps = 21/260 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITT------KHIRSGVESRKHTPSSAIQFLT 138 ++ ++ +++ D I+ D T + I + + + S L+ Sbjct: 16 RQMSPHTITNYQHQLDATIKILAQQDIHSWTQVTPSVVRFILAESKKQGLKEKSLALRLS 75 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS---FWSEGSQPRLA 195 ++R + V+Q + +NP + PK+ + E +QQ + + R Sbjct: 76 ALRRFLSFLVQQGELKVNPATGISAPKQGRHLPKNMDGEQIQQLLANDSKEPIDIRDRAI 135 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------ELPDGFMKLLA 246 E + SGLR S+ + + + ++ G V + + Sbjct: 136 LELMYSSGLRLSELQGLDLNSINTRVREVRVIGKGNKERVVPFGRYASHAIQEWLKVRAL 195 Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATA 304 P E F++ +++ + + G+N + H +R AT +A + Sbjct: 196 FNP-KDEALFVSQLGNRISHRAIQKRLETWGIRQGLNSHLNPHKLRHSFATHMLEASSDL 254 Query: 305 HELMATYGWKTVDQAETYTK 324 + G + + YT Sbjct: 255 RAVQELLGHSNLSTTQIYTH 274 >gi|229162527|ref|ZP_04290488.1| hypothetical protein bcere0009_32990 [Bacillus cereus R309803] gi|228621006|gb|EEK77871.1| hypothetical protein bcere0009_32990 [Bacillus cereus R309803] Length = 304 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 47/291 (16%), Positives = 93/291 (31%), Gaps = 26/291 (8%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR----KSGDFDYRKITTKHIRSGVESR 126 L+ +I EY + + Q+ R + G + I H++ V ++ Sbjct: 3 LEDVIEEYLYHCLAKGFTPKTMKNKRQEMKQLKRFLMDEKGISELEDINPLHLKQYVRTK 62 Query: 127 ---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----M 179 P S + +R F W ++EY+ N VE PK + ++ +T ++ + Sbjct: 63 HKEGLQPQSIVSMFKMVRAFFSWCQKEEYLKGNIAKKVELPKVPKKLLKGFTIQEVSAMI 122 Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD 239 F ++ + L GLR + Q+++ + + I + + Sbjct: 123 DAFSYKNYIEARNKAIVAMLSDCGLRAMEVRGLLTQNVKETTILVNGKGNKERI-MFISP 181 Query: 240 GFMKLLAM-----------TPIGKETFFINNDKQKMNATQFSIWFKAKATK---AGVNKS 285 K+L + + +F++ ++ K + V S Sbjct: 182 PLKKILIRYERLRKQYLKDKIVKTDNYFLSYTADPLSHMGIYNVIKEAGKRVEVEEVRCS 241 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336 H R F A G L G V + Y + + L K Sbjct: 242 PHTFRHFFAVQCILNGIDIFTLSKLLGHSDVSTTQRYLQSLEDFELIKKAM 292 >gi|134297261|ref|YP_001120996.1| site-specific tyrosine recombinase XerC [Burkholderia vietnamiensis G4] gi|134140418|gb|ABO56161.1| tyrosine recombinase XerC [Burkholderia vietnamiensis G4] Length = 306 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 47/284 (16%), Positives = 88/284 (30%), Gaps = 32/284 (11%) Query: 71 LKWLISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--- 126 L I+ Y + H L+ ++ + D++ + + +T +R V Sbjct: 2 LDDPIAAYLSNLKHVRQLSEHTLRGYTHELDELKKLAAGRPLETLTATDVRGAVARAHAG 61 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQF 182 + S L++ R ++W + + NP +V PKR + + +D M Sbjct: 62 GLSARSISHRLSAWRAFYRWLALRIEMPANPVAAVRAPKRPKTLPKALSVDDASALMDAP 121 Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRA-------------GVQHLQNNIFSIKTQKT 229 +EG + E SGLR ++ G L +++ K Sbjct: 122 LPDTTEGIRDHAILELFYSSGLRLAELVGLDAMYTQADGYRSAGWLDLAEAEVTVR-GKG 180 Query: 230 GTIITVELPDGFMKLLAMT--------PIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281 V + + L F++ +M K A AG Sbjct: 181 NKERKVPVGRKAIAALNAWLAVRGEFVKHDPHPLFLSVRGNRMAPGVVRERVKRAALSAG 240 Query: 282 VNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 + H +R AT + + G +V + YT Sbjct: 241 IPANVHPHVLRHSFATHVLQSSGDLRAVQELLGHASVAATQIYT 284 >gi|312111963|ref|YP_003990279.1| integrase [Geobacillus sp. Y4.1MC1] gi|311217064|gb|ADP75668.1| integrase family protein [Geobacillus sp. Y4.1MC1] Length = 384 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 50/316 (15%), Positives = 104/316 (32%), Gaps = 47/316 (14%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130 +W + Y+++ + + S E + I++ +ITT I S + Sbjct: 74 RWFNTSYKRTVE-----ITTAKSREYVIRNHIMKYFQHKKINEITTFDIDSFYVDKLDNG 128 Query: 131 SSAIQFLTS---MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 S + F AV+ V +NP + + PK K+E WT +++ +F + Sbjct: 129 YSGAYIRQMHNLLNQAFDQAVKWSLVKVNPVKNAKPPKVKSEEKITWTVDEVNRFLNLIK 188 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ----------------NNIFSIKTQKT-G 230 S + + +++G+R + + K KT Sbjct: 189 -NSSMEIPYLLAIFTGMRRGEVLGLKWDDVDFENKKIRIKRSLCFVSGKGLIFKEPKTKK 247 Query: 231 TIITVELPDGFMKLLAMTPIGKE--------------TFFINNDKQKMNATQFSIWFKAK 276 + + + + +L +E +D + ++ F Sbjct: 248 SKRQISISQHVVNILKKHKQKQEFQKEKLGTQYQDNNLIVCTDDGKPLDPRNLLRQFYRL 307 Query: 277 ATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIK 334 +A V + S H +R ATI G + G V + Y+ +D L + Sbjct: 308 IEEANVPRISFHDLRHTHATILMQQGENPKVVSERLGHSRVGITLDLYSHVSD--DLQEQ 365 Query: 335 NSRRISS--VVDSDDP 348 + + + + S +P Sbjct: 366 AAEKFENALLKQSQNP 381 >gi|217975041|ref|YP_002359792.1| tyrosine recombinase XerC [Shewanella baltica OS223] gi|217500176|gb|ACK48369.1| tyrosine recombinase XerC [Shewanella baltica OS223] Length = 306 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 32/271 (11%), Positives = 88/271 (32%), Gaps = 21/271 (7%) Query: 72 KWL--ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD-FDYRKITTKHIRS---GVES 125 +WL Y + L+ ++ ++ ++ + ++ +H + + Sbjct: 14 QWLQTFERYLSTER--QLSAHTVRNYLYELNRGSDLLPEGVHLLNVSREHWQQVLSKLHR 71 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + +P S L++++ ++ +R+ + +NP + PK+ + + + Sbjct: 72 KGLSPRSLSLCLSAVKQWGEFLLREGVIELNPAKGLSAPKQAKPLPKNIDVDAISHLLDI 131 Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT--------IIT 234 + + E SGLR ++ + +Q ++ ++ G + Sbjct: 132 EGTDPLSLRDKAMMELFYSSGLRLAELAALNLSSVQYDLKEVRVLGKGNKERIVPVGRLA 191 Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAK--ATKAGVNKSAHGVRKF 292 + ++ P F+ ++++ V H +R Sbjct: 192 IAALLNWLNCRKQIPCEDNALFVTEKGKRLSHRSIQARMAKWGQEQALSVRVHPHKLRHS 251 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYT 323 AT +A A + G + + YT Sbjct: 252 FATHMLEASADLRAVQELLGHANLATTQIYT 282 >gi|254785545|ref|YP_003072974.1| site-specific recombinase, phage integrase family [Teredinibacter turnerae T7901] gi|237687332|gb|ACR14596.1| site-specific recombinase, phage integrase family [Teredinibacter turnerae T7901] Length = 325 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 48/304 (15%), Positives = 96/304 (31%), Gaps = 20/304 (6%) Query: 28 GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSL 87 G R R + ++ AY + + K L LI+ + K Sbjct: 18 RDGPRHRKTFKTQNE-AAAYQRYIIAEHANAKPWKEAPKDNRRLSQLINAWWK---LHGQ 73 Query: 88 AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH--TPSSAIQFLTSMRVLFK 145 ++ ++Y + + + GD IT K+ S +R + ++A L ++ LF Sbjct: 74 SLKRGNERKTYLENLALQMGDPVANTITPKNFASFRSTRLKDVSANTANHDLAYLKALFN 133 Query: 146 WAVRQE-YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS--EGSQPRLAFEFLLYS 202 R + NP + R K + + + + + GS + L + Sbjct: 134 ELSRLGDWHQPNPFAEIRRLKTDETELTYLERSQIDELLTALDNCRGSHAGIIARVCLAT 193 Query: 203 GLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ 262 G R S++ ++NN + K+G + V + L+ + + Sbjct: 194 GARWSEAATLKPSQVKNNKVTFSKTKSGKVRAVPIAPELAALILNSAPLVD--------- 244 Query: 263 KMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 + F + + +H +R A+ G L G + Y Sbjct: 245 --GYSAFKRTVGKLDLELPPGQLSHVLRHTFASHFVMNGGNILTLQKILGHADIKMTMRY 302 Query: 323 TKGA 326 A Sbjct: 303 AHLA 306 >gi|163782910|ref|ZP_02177906.1| phage integrase family protein [Hydrogenivirga sp. 128-5-R1-1] gi|159882031|gb|EDP75539.1| phage integrase family protein [Hydrogenivirga sp. 128-5-R1-1] Length = 361 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 37/258 (14%), Positives = 83/258 (32%), Gaps = 28/258 (10%) Query: 99 FDQIIRKSGDFD---YRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAI 155 +++ GD + + + PS+ + L +R + + + Sbjct: 105 VKKLVEVFGDKTLDYFSEFLIDSYKQDRIKEGVKPSTVNRELNILRAILRKVKEWGMYSG 164 Query: 156 N-PCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGV 214 + P ++ K E +R + E+++ + +P +F +GLR S+ Sbjct: 165 DLP--RIKTYKVDDERVRYLSPEELKALIDACPDWFKP--VVKFACLTGLRASELFSLTW 220 Query: 215 QHLQNNIFSIKT----QKTGTIITVELPDGFMKLLAMTPIGKE-------TFFINNDKQK 263 + + I KT + L +++L +E F N + Sbjct: 221 DMVNLSEGYITVPAKYSKTKETKRIPLHPKALEVLREVKARQEERWIDYGYVFTNRMGKP 280 Query: 264 MNATQFS--IWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320 + FK KAG+ + H +R A+ +G + + + + Sbjct: 281 YSVEGQGYKRVFKTACEKAGIRDFRFHDLRHTFASYLVMSGVDFYTVQELMRHSSPRMTK 340 Query: 321 TYTKGADRIRLGIKNSRR 338 Y L ++ R+ Sbjct: 341 RYAH------LSPEHIRK 352 >gi|124268427|ref|YP_001022431.1| tyrosine recombinase XerC subunit [Methylibium petroleiphilum PM1] gi|124261202|gb|ABM96196.1| tyrosine recombinase XerC subunit [Methylibium petroleiphilum PM1] Length = 335 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 43/269 (15%), Positives = 92/269 (34%), Gaps = 29/269 (10%) Query: 85 GSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESR---KHTPSSAIQFLTS 139 L+ + +++E F ++ + R + H+R + P S L++ Sbjct: 46 RRLSAKTLLNYEEAFRRLGEAAQRDGVALRAVQPHHVRHWMARLHAGGLAPRSIAIALSA 105 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF------WSEGSQPR 193 R L++W + VA+NP + P+ + + + ++ R Sbjct: 106 WRGLYRWLGHEGRVALNPVEGLRAPRAAKPLPKALSVDHAVALADHRQVDGDARLEARDR 165 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT--------QKTGTIITVE--------L 237 E L GLR ++ V + I K +V L Sbjct: 166 CLVELLYGCGLRVAELVDLDVTPGGGALGWIDRADAEAHVLGKGSKRRSVPVGRAALAAL 225 Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSAT 295 D + ++ + + F++ +++ A+Q K +A +AG+ + H +R A+ Sbjct: 226 DDWLAQRGSVAQVDEPALFVSRHGRRLTASQVRTRLKERAIQAGLPTHVHPHMLRHSYAS 285 Query: 296 ISADAGATAHELMATYGWKTVDQAETYTK 324 + + G + + YTK Sbjct: 286 HLLQSSGDLRAVQELLGHANITTTQVYTK 314 >gi|116618278|ref|YP_818649.1| tyrosine recombinase XerC subunit [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116097125|gb|ABJ62276.1| tyrosine recombinase XerC subunit [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 300 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 36/277 (12%), Positives = 98/277 (35%), Gaps = 27/277 (9%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYF----DQIIRKSGDFDYRKITTKHIRSGVE---S 125 L +Y +S + + ++ + + + G + ++ T +R + Sbjct: 7 QLYHDYLESER--QYSPQTLKAYLTDIAEFKNYLHESGGFTKFGEVQTLDVRVYLNDLYE 64 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 +K ++ + ++S+R+ +++ + ++ NP S+ K + + + ++++ + Sbjct: 65 KKLARTTISRKISSLRMFYQFLITNQFAIDNPFDSISLKKHQNQLPDFFYEDELHELFDV 124 Query: 186 ---WSEGSQPRLA--FEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVE--- 236 + R A EFL +G+R ++ + L + + K V Sbjct: 125 AYNHEDYLWERNAALLEFLYATGIRVAEIAGLTLSQLDFSQRLVLIHGKGNKDRYVPFGH 184 Query: 237 ----LPDGFMKLLAMTPI---GKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AH 287 + ++ L + E F+N+ + + + ++ + H Sbjct: 185 FAENIMKEYITDLRASLTVNQEHEYVFVNHRGEPITPAGITYILNQLMQRSALTGKIHPH 244 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 +R AT + GA + G + + YT Sbjct: 245 MLRHTFATHLINRGADMRTVQELLGHVNLSTTQMYTH 281 >gi|83313028|ref|YP_423292.1| site-specific recombinase XerD [Magnetospirillum magneticum AMB-1] gi|82947869|dbj|BAE52733.1| Site-specific recombinase XerD [Magnetospirillum magneticum AMB-1] Length = 308 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 36/268 (13%), Positives = 85/268 (31%), Gaps = 25/268 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITT--KHIRSGVESRKH---TPSSAIQFLTS 139 + N+ ++ + + + + + + + + + L+ Sbjct: 20 RGASPNTLDAYGRDLADFAEFLDGRGFSPLRADARAVAAYIARQAEIGMAARTQARRLSC 79 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK--SFWSEGSQPRLA-- 195 ++ + + + +P +++ P+ + +E++ + EGS L Sbjct: 80 LKQFYGFVFAERLRPDDPTANIDAPRLGRPLPKYLRREEVTALLDAARALEGSDGILMTA 139 Query: 196 -FEFLLYSGLRCSDSCRAGVQHL-QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKE 253 E L +GLR S+ + + ++ + K V L D L + ++ Sbjct: 140 LLETLYAAGLRVSELVSLPLSAVARDPSVLVVRGKGSKERMVPLSDPARAALLAWKVERQ 199 Query: 254 TFFINNDKQKM-----------NATQFSIWFKAKATKAGVN---KSAHGVRKFSATISAD 299 T + + + F+ A AG++ S H +R A+ Sbjct: 200 TLVPKSKPSRWLFPSSGALGHLTRSGFAKMLGRVAVLAGLDPAKVSPHVLRHSFASHLLA 259 Query: 300 AGATAHELMATYGWKTVDQAETYTKGAD 327 GA + G + E YT D Sbjct: 260 GGADLRSVQEMLGHADIATTEIYTHLID 287 >gi|330818646|ref|YP_004362351.1| Site-specific recombinase XerC [Burkholderia gladioli BSR3] gi|327371039|gb|AEA62395.1| Site-specific recombinase XerC [Burkholderia gladioli BSR3] Length = 306 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 45/279 (16%), Positives = 88/279 (31%), Gaps = 30/279 (10%) Query: 75 ISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTP 130 I+ Y H L+ ++ + D ++ + + +R V + Sbjct: 6 IAAYLSYLQHVRQLSEHTLRGYAHELDALLALADGRPLASLGAADMRGAVARAHAGGLSA 65 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQFKSFW 186 S L++ R ++W + + NP +V PKR + + +D M+ Sbjct: 66 RSIAHRLSAWRAFYRWYALRVEMPANPVATVRAPKRAKTLPKALSVDDANTLMESPFPDT 125 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN------IFSIKT------QKTGTIIT 234 EG + E SGLR ++ V + Q + + K G Sbjct: 126 PEGLRDHAILELFYSSGLRLAELVGLDVHYTQADGYRSASWLDREQAEVSVLGKGGKERK 185 Query: 235 VELPDGFMKLLAMT--------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-- 284 V + ++ L F++ ++M+ K A AG+ Sbjct: 186 VPVGRKALEALDAWLAVRAGWVRTDPHPLFLSVRGKRMSPGVVRERVKRAALVAGIPANV 245 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 H +R AT + + G ++ + YT Sbjct: 246 HPHVLRHSFATHVLQSSGDLRAVQELLGHASISATQVYT 284 >gi|251782571|ref|YP_002996873.1| integrase [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242391200|dbj|BAH81659.1| integrase [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 362 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 49/302 (16%), Positives = 95/302 (31%), Gaps = 27/302 (8%) Query: 48 MSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG 107 +A + ++ P+ T L ++ K + + I+ K Sbjct: 40 QAARETLINLQAELDKPKSS-MTFGALTDQWLKEYEKTVQGSTYLKTERNINKHILPKLD 98 Query: 108 DFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167 I I+ E + + L +R + AVR Y+ NP L + PK K Sbjct: 99 KVKIGDINPLLIQRLTEEWCNDLKYGGKILGLVRNILNLAVRYGYINNNPALPITPPKIK 158 Query: 168 TEG---IRPWTKEDMQQFKSFWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222 + +T + ++QF + F L ++G+R + L N Sbjct: 159 RKRKMNNNFYTLDQLKQFLELVEKTDNIEKIALFRLLAFTGIRKGELLALTWDDLNGNTL 218 Query: 223 SIKTQKTGTIITVEL------------------PDGFMKLLAMTPIGKETFFINNDKQKM 264 SI T T + +E+ + ++L P F + M Sbjct: 219 SINKAVTRTQVGLEIDVTKTKSSDRLISLDDETLEILLELRETFPTSTLMF-QSESGGIM 277 Query: 265 NATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TY 322 + W + + + HG R A++ ++G + ++ G + Y Sbjct: 278 TPSLPRKWLLQIIKGTDLPQITIHGFRHTHASLLFESGLSLKQVQHRLGHGDLQTTMNVY 337 Query: 323 TK 324 T Sbjct: 338 TH 339 >gi|28210981|ref|NP_781925.1| site-specific tyrosine recombinase XerC [Clostridium tetani E88] gi|28203420|gb|AAO35862.1| putative integrase, recombinase [Clostridium tetani E88] Length = 328 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 40/229 (17%), Positives = 86/229 (37%), Gaps = 19/229 (8%) Query: 119 IRSGVESRKHTPSSAI-QFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTK 176 + +++ + S A + + +++ FK+ + + + NP + +E PK K T Sbjct: 85 FMAFLDNYRDNGSYAKARKVATLKSFFKFLYSKVKILEENPAIELESPKIKKRNPTYLTL 144 Query: 177 EDMQQFKSFWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT 234 E+ ++ + ++ R L GLR S+ C + ++ + + K T Sbjct: 145 EESKRLLASIDGTNKARDYCIITLFLNCGLRLSELCSIDISKIKEDTLYVI-GKGNKERT 203 Query: 235 VELPDGFMKLLA----------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN- 283 + L +K + K+ FI+ + ++N I K KA ++ Sbjct: 204 IYLNKACLKAVEDYLKVRNKNLDKIKDKDALFISRNNTRINKRTVEIMLKKYLKKANLDE 263 Query: 284 --KSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGADRI 329 + H +R +AT+ G L G + + + YT + Sbjct: 264 EKYTPHKLRHTAATLMYKHGDVDIRSLQKILGHENISTTQIYTHVDNEK 312 >gi|189024593|ref|YP_001935361.1| Phage integrase [Brucella abortus S19] gi|189020165|gb|ACD72887.1| Phage integrase [Brucella abortus S19] Length = 116 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 26/115 (22%), Positives = 49/115 (42%), Gaps = 2/115 (1%) Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290 + + + ++L TP ET + + + + A + K + HG+R Sbjct: 1 MFLPITPILSEVLEATPRQGETVLVTAYGEPFSPKSLTGRMVDWTASAKLPKGFTLHGLR 60 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDS 345 K I A+ GA+ ++M T G + AE YT+ A++ RL R+ + + Sbjct: 61 KTLGKILAEGGASTRQIMDTLGHDDIAHAELYTREAEQARLATDGMSRVVRLKRN 115 >gi|329733650|gb|EGG69978.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus 21193] Length = 298 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 37/266 (13%), Positives = 94/266 (35%), Gaps = 22/266 (8%) Query: 85 GSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGVE---SRKHTPSSAIQFLTS 139 + + ++ S++ Q + + + + R+ + S +S + +++ Sbjct: 16 RNFSEHTLKSYQDDLIQFNQFLEQEHLELNTFEYRDARNYLSYLYSNHLKRTSVSRKIST 75 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLA 195 +R +++ + + INP + + PK++ + + +E+M+ E + + R+ Sbjct: 76 LRTFYEYWMTLDENIINPFVQLVHPKKEKYLPQFFYEEEMEVLFKTVEEDTSKNLRDRVI 135 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVE--------LPDGFMKLL 245 E L +G+R S+ Q + N ++ K V + + Sbjct: 136 LELLYATGIRVSELVNIKKQDIDFYANGVTV-LGKGSKERFVPFGAYCRQSIENYLEHFK 194 Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATK-AGV-NKSAHGVRKFSATISADAGAT 303 + + +N + + + AGV H +R AT + GA Sbjct: 195 PIQSCNHDFLIVNMKGEAITERGVRYVLNDIVKRTAGVSEIHPHKLRHTFATHLLNQGAD 254 Query: 304 AHELMATYGWKTVDQAETYTKGADRI 329 + + G + YT +++ Sbjct: 255 LRTVQSLLGHVNLSTTGKYTHVSNQQ 280 >gi|319406365|emb|CBI80006.1| integrase/recombinase XerD [Bartonella sp. AR 15-3] Length = 312 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 43/285 (15%), Positives = 94/285 (32%), Gaps = 33/285 (11%) Query: 73 WLISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKI--TTKHIRSGVESRKHT 129 +I + + + +V + ++++ K + + + + + Sbjct: 5 AVIDRFLEMMSAERGASVRTLLAYQHDLQWAQNKLSSRSISFFSAQREDLINLLSLMQIA 64 Query: 130 PSSA---IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 +A + L+++R F++ + +P ++ P++ + +++ + + F Sbjct: 65 GCAATSQARRLSTLRQFFQFLYAEGLREDDPSNDIDSPRQGRPLPKIISEDAVTKLLDFA 124 Query: 187 SEGSQP------------RLA--FEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGT 231 + RL E L +GLR S+ VQ ++ F + K G Sbjct: 125 QLETDQAEYGSQNYYRALRLWVFLEMLYATGLRISELVSLPVQAVRRKEAFILVRGKGGK 184 Query: 232 IITVELPDGFMKLL--------AMTPIGKETFFINNDKQKMNATQFSIW-FKAKATKAGV 282 V + + ++L F A QF K A +AG+ Sbjct: 185 ERVVLVSEKARQVLSQWLILRDQGKDATSFYLFPARSSTGYIARQFVARGLKDLAKRAGI 244 Query: 283 ---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 N S H +R A+ GA + G + + YT Sbjct: 245 QSENFSPHVLRHAFASHLLQNGADLRAVQHLLGHCDISTTQIYTH 289 >gi|296113698|ref|YP_003627636.1| tyrosine recombinase subunit XerC [Moraxella catarrhalis RH4] gi|295921392|gb|ADG61743.1| tyrosine recombinase subunit XerC [Moraxella catarrhalis RH4] gi|326562438|gb|EGE12757.1| tyrosine recombinase subunit XerC [Moraxella catarrhalis 7169] gi|326569146|gb|EGE19208.1| tyrosine recombinase subunit XerC [Moraxella catarrhalis BC1] Length = 330 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 44/297 (14%), Positives = 105/297 (35%), Gaps = 30/297 (10%) Query: 58 REYINSPRKKPTTLKW-LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDY----- 111 +S + P++ W +S + + + ++ ++++ Q +Y Sbjct: 9 APTHSSHQSDPSSPAWGYLSSWCDELRLQNYSKHTITTYQTALIQFFNFLESDNYLGGDP 68 Query: 112 ----RKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167 R+ T+ + +E K P SA L+++R+ +++ ++Q +A+NP + Sbjct: 69 LACRRQDLTRFFSTRLEEEKIKPISAKLSLSAIRIFYQFLIKQGVIAVNPTTGYKIKSAP 128 Query: 168 TEGIRPWTKEDMQQFK--------SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN 219 + + ++Q + + + FE + SGLR S+ + + Sbjct: 129 RKLPTVADELLIKQLLDQKTPEDTAKACLWIRDKAMFELMYSSGLRLSELAGLNMGDVNF 188 Query: 220 NIFSIKTQKTGTIIT---------VELPDGFMKLLAMTPIGKETFFINND-KQKMNATQF 269 +I ++ G + L D + FI+ +++ Sbjct: 189 DIGIVRVLGKGNKTRQVPVGKKAMIALQDYLPHRNLWQKKNCKALFISERHGTRLSTRAI 248 Query: 270 SIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 + K AT AG+ + H +R A+ + + G + + + YT Sbjct: 249 QLRLKVCATMAGIELNMYPHLLRHCFASHVLSSSGDLRAIQEMLGHQNISTTQIYTH 305 >gi|320107746|ref|YP_004183336.1| integrase family protein [Terriglobus saanensis SP1PR4] gi|319926267|gb|ADV83342.1| integrase family protein [Terriglobus saanensis SP1PR4] Length = 319 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 47/298 (15%), Positives = 91/298 (30%), Gaps = 46/298 (15%) Query: 70 TLKWLISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGD--------FDYRKITTKHIR 120 + L + ++ ++ ++ + D + + Sbjct: 3 SFSELADSFLAMLRDERGVSAHTLRAYTRELNDFTAFLADLLGNEAEVKQVEHLHIRSYL 62 Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 + + R + +SA + L ++R FKW ++ V NP L V PK R + E++ Sbjct: 63 AVLYDRGLSRASAARALAAVRSWFKWLAKEGKVQQNPALLVSTPKLPKHLPRVPSAEEVN 122 Query: 181 QFK------------SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKT 226 + + W E + R+ +E L G+R S+ + +N+ + Sbjct: 123 RVLDSIEQTGKKDESASWPE--RDRVIWELLYGCGIRNSELVGIDLSAIDWKNDAILV-L 179 Query: 227 QKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM------------------NATQ 268 K V L D + +E K K Sbjct: 180 GKGRKERYVPLGDAANSAMRAYMPQREAKLQAAGKGKWMHSGPLLINLVARGDCRLTTRS 239 Query: 269 FSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 KA A G+ H +R T + GA + G + + + YT+ Sbjct: 240 VGRIVKAIAVNRGLPADVHPHTLRHAFGTHLLEEGADLRAIQEMLGHERLSTTQRYTQ 297 >gi|312977299|ref|ZP_07789047.1| integrase/recombinase XerC [Lactobacillus crispatus CTV-05] gi|310895730|gb|EFQ44796.1| integrase/recombinase XerC [Lactobacillus crispatus CTV-05] Length = 270 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 40/235 (17%), Positives = 86/235 (36%), Gaps = 17/235 (7%) Query: 107 GDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166 G R+ + + RK SS ++ ++S+ + + R++ VAI+P + + Sbjct: 16 GWTKVRERDIQVYLQHLAERKLARSSQLRKMSSLHSFYHFLTRRKLVAIDPTQGITLRRG 75 Query: 167 KTEGIRPWTKEDMQQFKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222 + + + + + +++Q + FE +G+R S+ + L ++ Sbjct: 76 EKKLPQFFYQPELKQVFDSLKGNKPLTMRNLAMFELFYATGMRVSEVSNLTLNQLDLDLQ 135 Query: 223 SIKTQKTGTI-ITVELPDGFMKLL-----AMTP-----IGKETFFINNDKQKMNATQFSI 271 +I G V D K L P ++ F+NN + + Sbjct: 136 TILVHGKGNKDRYVAFDDKTKKSLIAYLENARPLLLKNDDEQHVFLNNQGTGITSRGIET 195 Query: 272 WFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 + +AG++ H +R AT + GA + G ++ + YT Sbjct: 196 VMQKTFNQAGISGKVHPHELRHSFATAMLNNGADLRSVQELLGHSSLSATQIYTH 250 >gi|167040193|ref|YP_001663178.1| tyrosine recombinase XerD [Thermoanaerobacter sp. X514] gi|300914277|ref|ZP_07131593.1| tyrosine recombinase XerD [Thermoanaerobacter sp. X561] gi|307724487|ref|YP_003904238.1| tyrosine recombinase XerD [Thermoanaerobacter sp. X513] gi|166854433|gb|ABY92842.1| tyrosine recombinase XerD [Thermoanaerobacter sp. X514] gi|300889212|gb|EFK84358.1| tyrosine recombinase XerD [Thermoanaerobacter sp. X561] gi|307581548|gb|ADN54947.1| tyrosine recombinase XerD [Thermoanaerobacter sp. X513] Length = 290 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 30/241 (12%), Positives = 89/241 (36%), Gaps = 13/241 (5%) Query: 89 VNSRISFESYFDQIIR-KSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWA 147 + + + + + + ++ +K T + ++ + + ++ + L+S++ + + Sbjct: 25 ESYNRDIKQFLNYLEEIEFEYYNVKKSTILNYLYYLKKKGKSQATVSRNLSSLKAFYHYL 84 Query: 148 VRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAFEFLLYSG 203 ++ + +P + PK + + T E + S +G + + E L +G Sbjct: 85 FMKKKIEEDPTYMINTPKVEKKPPATLTVEQVDMLLSIDFGNDEKGLRDKALIELLYATG 144 Query: 204 LRCSDSCRAGVQHLQNNIFSIKTQKTGTII------TVELPDGFMKLLAMTPIGKETFFI 257 L+ S+ ++ + + + + + +E +++ G+ T F+ Sbjct: 145 LKVSEVISLKLEDVNLSYGYVVIRSNKERVIPIGSHAIEALKNYIEKGRKAKNGENTLFL 204 Query: 258 NNDKQKMNATQFSIWFKAKATKA--GVNKSAHGVRKFSATISADAGATAHELMATYGWKT 315 N +K+ + K G + + +R+ A GA + G++T Sbjct: 205 NLRGEKLTRQGCWKIIREYTDKINPGFPVTPNTLRQSFAQHMLQNGADIRAVQEMLGYQT 264 Query: 316 V 316 Sbjct: 265 D 265 >gi|109392486|ref|YP_655615.1| gp36 [Mycobacterium phage Che12] gi|91980636|gb|ABE67355.1| gp36 [Mycobacterium phage Che12] Length = 371 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 57/298 (19%), Positives = 109/298 (36%), Gaps = 40/298 (13%) Query: 54 STPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYR 112 K+ ++ + T KWL+ LA ++R + + ++ I GD Sbjct: 63 DRAKKAAASAVTLEEYTRKWLVER--------DLAESTRELYSGHAERRIYPVLGDVAVP 114 Query: 113 KITTKHIRSGVESR-KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171 ++T +R+ ++ P++ +R + AV + +A NPC +E+ + Sbjct: 115 ELTPALVRAWWAGMGRNHPTARRHAYNVLRAVMNTAVEDKLIAENPCR-IEQKAPDERDV 173 Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKT 229 T E++ + R+A L ++ LR + + + ++ ++ Sbjct: 174 EALTPEELDIVAA--EIFEHYRIAAYILAWTSLRFGELIELRRKDIVDDGKTMKLRVRRG 231 Query: 230 GTII----------------TVELPDGFMKLLA-----MTPIGK--ETFFINN-DKQKMN 265 GT + V +P ++ T + K E F + +++ Sbjct: 232 GTRVGNKIVVGNAKTVRSKRPVTVPPHVATMIREHMKDRTKMNKGPEAFLVTTTQGNRLS 291 Query: 266 ATQFSIWFKA-KATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 + F+ K A H +R AT +A AGAT ELMA G T A Y Sbjct: 292 KSAFTKSLKRGYAKIGRPELRIHDLRAVGATFAAQAGATTKELMARLGHTTPRMAMKY 349 >gi|145631901|ref|ZP_01787657.1| tyrosine recombinase [Haemophilus influenzae R3021] gi|148826672|ref|YP_001291425.1| site-specific tyrosine recombinase XerC [Haemophilus influenzae PittEE] gi|229847208|ref|ZP_04467312.1| site-specific tyrosine recombinase XerC [Haemophilus influenzae 7P49H1] gi|166918886|sp|A5UE41|XERC_HAEIE RecName: Full=Tyrosine recombinase xerC gi|144982462|gb|EDJ90028.1| tyrosine recombinase [Haemophilus influenzae R3021] gi|148716832|gb|ABQ99042.1| tyrosine recombinase [Haemophilus influenzae PittEE] gi|229809884|gb|EEP45606.1| site-specific tyrosine recombinase XerC [Haemophilus influenzae 7P49H1] gi|309973815|gb|ADO97016.1| Site-specific tyrosine recombinase XerC [Haemophilus influenzae R2846] Length = 295 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 39/260 (15%), Positives = 88/260 (33%), Gaps = 21/260 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITT------KHIRSGVESRKHTPSSAIQFLT 138 ++ ++ +++ D I+ D T + I + + + S L+ Sbjct: 16 RQMSPHTITNYQHQLDATIKILAQQDIHAWTQVTPSVVRFILAESKKQGLKEKSLALRLS 75 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS---FWSEGSQPRLA 195 ++R + V+Q + +NP + PK+ + E +QQ + + R Sbjct: 76 ALRRFLSFLVQQGELKVNPTTGISAPKQGKHLPKNMDGEQVQQLLANDSKEPIDIRDRAI 135 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------ELPDGFMKLLA 246 E + SGLR S+ + + + ++ G V + + Sbjct: 136 LELMYSSGLRLSELQGLDLNSINTRVREVRVIGKGNKERVVPFGRYASHAIQEWLKVRAL 195 Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATA 304 P E F++ +++ + + G+N + H +R AT +A + Sbjct: 196 FNP-KDEALFVSQLGNRISHRAIQKRLETWGIRQGLNSHLNPHKLRHSFATHMLEASSDL 254 Query: 305 HELMATYGWKTVDQAETYTK 324 + G + + YT Sbjct: 255 RAVQELLGHSNLSTTQIYTH 274 >gi|260461664|ref|ZP_05809911.1| tyrosine recombinase XerD [Mesorhizobium opportunistum WSM2075] gi|259032734|gb|EEW33998.1| tyrosine recombinase XerD [Mesorhizobium opportunistum WSM2075] Length = 305 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 48/281 (17%), Positives = 95/281 (33%), Gaps = 31/281 (11%) Query: 75 ISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKI--TTKHIRSGVESRKHTPS 131 I + + + A N+ S+ + + + + +R P+ Sbjct: 7 IEAFLEMMSAERGAAENTLSSYRRDLEDASNEIDGGLAGAAAADIRAYLDDIAARGFAPT 66 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS---- 187 S + L+++R FK+ + +P +++ PK+ + ++ D + + Sbjct: 67 SQARKLSAIRQFFKFLYAEGLRGDDPTGTLDSPKKGRPLPKTMSEADTGRLIDRAATEAG 126 Query: 188 ---EGSQPRLA-------FEFLLYSGLRCSDSCRAGVQ-HLQNNIFSIKTQKTGTIITVE 236 G RLA E L +GLR S+ V +++ F + K V Sbjct: 127 DAGLGHADRLAALRLHALVEVLYATGLRVSELVGLPVTVAQRDDRFFMVRGKGDKERMVP 186 Query: 237 LPDGFMKLLAMT-------PIGKETFFIN---NDKQKMNATQFSIWFKAKATKAGV---N 283 L + P E+ F+ +D ++ F+ K A +AG+ Sbjct: 187 LSAKARAAMRTWLAARAGVPAFAESPFLFPAASDSGYLSRQVFARDLKGLAARAGIASAK 246 Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 S H +R A+ GA + G + + YT Sbjct: 247 VSPHVLRHAFASHLLQNGADLRAVQQLLGHADISTTQIYTH 287 >gi|126207972|ref|YP_001053197.1| phage integrase family protein [Actinobacillus pleuropneumoniae L20] gi|303250282|ref|ZP_07336482.1| phage integrase family protein [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|126096764|gb|ABN73592.1| predicted phage integrase family protein [Actinobacillus pleuropneumoniae serovar 5b str. L20] gi|302650898|gb|EFL81054.1| phage integrase family protein [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 346 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 51/252 (20%), Positives = 92/252 (36%), Gaps = 18/252 (7%) Query: 88 AVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFK 145 A N+R S + + GD +I +HI+ ++ RK TP+ A + ++ Sbjct: 88 AKNTRQSNLQAIGWLCKFFGDPPIPLERIEPQHIKQYLQWRKDTPAVANIEVGLFNTIWN 147 Query: 146 WAVRQEYVA-INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGL 204 A Y + +P V++ K I +++ F E E G Sbjct: 148 SAREWGYTSLPSPSQGVKKFPTKYREIYV-EDYILEKIYEFADERMAD--IIETAYLLGQ 204 Query: 205 RCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF-FINNDKQK 263 R D C H+ N I I QKTG + E+ +++ + T+ F N +K Sbjct: 205 RPIDICNIHRSHIYNGILHITQQKTGKKVRFEITGRLKEIIDKRLQPETTWLFTNKWGKK 264 Query: 264 MNATQFSIWFKAKATKA---------GVNK-SAHGVRKFSATISADAGATAHELMATYGW 313 ++ ++ F+ KA + K +R +AT + AT + G Sbjct: 265 LDRQILTVHFREIREKAMRAYPELANEIGKVQMRDMRAKAATDISLT-ATDEQAQKQLGH 323 Query: 314 KTVDQAETYTKG 325 + + Y + Sbjct: 324 TSKRMTQHYIRK 335 >gi|153005549|ref|YP_001379874.1| tyrosine recombinase XerC [Anaeromyxobacter sp. Fw109-5] gi|152029122|gb|ABS26890.1| tyrosine recombinase XerC [Anaeromyxobacter sp. Fw109-5] Length = 311 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 44/233 (18%), Positives = 80/233 (34%), Gaps = 22/233 (9%) Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM-- 179 + + +S + L+++R L+++ VR+ A NP SV PKR + +E++ Sbjct: 64 ARAAGEAGATSLGRKLSAIRTLYRFLVREGLAAGNPARSVSGPKRPMRLPQVLPEEEVAA 123 Query: 180 --QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVE 236 + + + R E L SGLR S+ + + + K V Sbjct: 124 LVEAPELAAPLEQRDRAFLELLYASGLRVSELTGLDLASIDLSGRLVRVLGKRNKERIVP 183 Query: 237 L-----------PDGFMKLLAMT---PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282 D +LA +E F+N +++ + G+ Sbjct: 184 FGASAGEAVRRYLDEARPILAAGRDHATAEEALFLNYRGGRLSPRSVARRLDRWVLATGL 243 Query: 283 NKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 + H +R AT GA + G ++ + YT D RL Sbjct: 244 PRHVHPHVLRHCFATHLLGNGADLRGIQELLGHASLSTTQRYTH-VDWKRLAA 295 >gi|168185960|ref|ZP_02620595.1| phage integrase [Clostridium botulinum C str. Eklund] gi|169296151|gb|EDS78284.1| phage integrase [Clostridium botulinum C str. Eklund] Length = 366 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 53/328 (16%), Positives = 113/328 (34%), Gaps = 36/328 (10%) Query: 49 SALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD 108 +AL + E + T+K I + ++ + + ++ ++ + II G Sbjct: 42 AALAELINQIEKGSIITNDKMTVKEYIEYWLETYPKNNCSPSTYKRYKFFIKDIINYIGK 101 Query: 109 FDYRKITTKHIRSGVESRKHTPS-SAIQFLTSMRVL---FKWAVRQEYVAINPCLSVERP 164 K+ I+ E + S + + R+L K A + + + NPC V P Sbjct: 102 HKLSKLNPMIIQKFYEDLLSDRNISNNTVIKTHRMLHLALKHAQQWQLINNNPCDLVTPP 161 Query: 165 KRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224 K + ++ W +++ + E A + +G R + C + +I Sbjct: 162 KATKQEMKYWQPDEINIYLDILKEEFL-YPAIFLAIQTGCRVGELCAIKWSDVDLIDKTI 220 Query: 225 KTQKT----------------GTIITVELPDGFMKLLAMTPIGK-----------ETFFI 257 + KT +I T+ L + + L + + Sbjct: 221 RIDKTLQRIDCKLALKYPKTQNSIRTITLLETAITFLKNLKKNRIEKKLKYGIELDYVLC 280 Query: 258 NNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTV 316 D + ++ S F K + K H +R AT+ AG A + G TV Sbjct: 281 WEDGRPIDPHYISQHFPKLLDKYNLPKIRFHDLRHSHATLLLKAGVNAKIISKRLGHSTV 340 Query: 317 D-QAETYTKGADRIRLGIKNSRRISSVV 343 +TY+ + ++ + ++ +++ Sbjct: 341 AFTLDTYSHVS--TKMQKEEMSKVENLL 366 >gi|295696106|ref|YP_003589344.1| integrase family protein [Bacillus tusciae DSM 2912] gi|295411708|gb|ADG06200.1| integrase family protein [Bacillus tusciae DSM 2912] Length = 304 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 48/281 (17%), Positives = 97/281 (34%), Gaps = 27/281 (9%) Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD------YRKITTKHIRSGVESRKHTPS 131 Y +S L+ + ++ Q++ D + + + + R + Sbjct: 18 YLESER--RLSPRTVRAYMGDVGQLLEWMQDQGIGGWDLLTPVRIRDFLAELWDRGLSRR 75 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS---- 187 S + L++ R L+++ +R++ V +P V PK++ E++ + Sbjct: 76 SVARMLSAYRTLYRFFLREDEVRESPLEPVATPKQEKRIPNFMDLEEVFHLLASPDPNTA 135 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLLA 246 G + R E+L +G+R ++ V + ++ K G V + L Sbjct: 136 LGQRDRALLEWLYATGVRVGEAVALRVGDVDMAGRRALIHGKGGKERYVLFGRSAARALT 195 Query: 247 ------------MTPIGKETFFINNDKQKMNATQFSIWF-KAKATKAGVNK-SAHGVRKF 292 P + F+N ++ + A AG +K S H +R Sbjct: 196 RYLEVGWPALAGACPGPGDPVFLNYRGGALSDRSVRRIVDRHMARVAGYHKISPHVLRHT 255 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 AT DAGA + G ++ + YT L + Sbjct: 256 FATHLLDAGADLRAVQELLGHASLRSTQIYTHTTRERLLQV 296 >gi|149919060|ref|ZP_01907545.1| site-specific recombinase, phage integrase family protein [Plesiocystis pacifica SIR-1] gi|149820213|gb|EDM79632.1| site-specific recombinase, phage integrase family protein [Plesiocystis pacifica SIR-1] Length = 361 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 51/326 (15%), Positives = 95/326 (29%), Gaps = 28/326 (8%) Query: 25 FRKGHGR--RIRLPYP-----HESTFIPAYMSAL-TGSTPKREYINS-PRKKP-TTLKWL 74 F+ GR RIR P + SAL +G+ K + P+++P + Sbjct: 10 FQHPDGRIERIRRRSPVNTRRGAQQYEREVRSALLSGTYQKGDTTRQEPKQEPCPSFAQF 69 Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESRKHT--PS 131 S++ + + +S S S + + G +I + I + T Sbjct: 70 ASQFIDNYATVNNKPSSVRSKRSMLEHHLTPFFGKMRLSQIGPRQIERYKALKAKTLSAK 129 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191 + LT++R + A Y+ P V+ + R E+ + E Sbjct: 130 TINNHLTTVRKMLVVASEWGYLEAVPS--VKWMRAPKPEFRFLDFEEADRLLEGAKEEPM 187 Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQ---------KTGTIITVELPDG 240 + +GLR + + + I+ K + L + Sbjct: 188 WWTMILVAMRTGLRQGELLGLRWCDVDLKSGRLVIRQAVAEGIVGTPKNHRQRELPLAES 247 Query: 241 FMKLLAMT-PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISA 298 + L F D + KAG+ H +R A+ Sbjct: 248 VHQALEAWRHRLGPLVFCQPDGTMLTKNMCKWPLIRAKRKAGIEALGWHDLRHTFASHLV 307 Query: 299 DAGATAHELMATYGWKTVDQAETYTK 324 G + G T++ Y Sbjct: 308 MRGVPLRAVQELLGHSTIEMTMRYAH 333 >gi|117919693|ref|YP_868885.1| phage integrase family protein [Shewanella sp. ANA-3] gi|117612025|gb|ABK47479.1| phage integrase family protein [Shewanella sp. ANA-3] Length = 399 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 54/297 (18%), Positives = 100/297 (33%), Gaps = 19/297 (6%) Query: 48 MSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKS 106 A + +K T+K L ++ + +++ ++ D+ II Sbjct: 77 WLAEVRRGGDPGAAKAEARKAPTVKELCVKFMEDYSRHRNKPSTQRGYQGNIDRNIIPIL 136 Query: 107 GDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAI--NPCLSVERP 164 G + + + + ++ + P A + L+ +R +F A Y NPC + Sbjct: 137 GRMKVQDVKRADVAAMMKKLDYKPGEANKALSVLRKMFNLAEIWGYRTDGSNPCRHIP-L 195 Query: 165 KRKTEGIRPWTKEDMQQFKSFWS----EGSQPR---LAFEFLLYSGLRCSDSCRAGVQHL 217 + R T E+M + EG P LA R S+ + + Sbjct: 196 YTGGKTTRLITDEEMVKLFKHLDQIEAEGLVPYVVPLAIRLQFEFAARRSEIVLLEWEWI 255 Query: 218 Q--NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIG-KETFFINNDKQKMNATQFSIWFK 274 N KTG + + + +LL+ P + + + + + + ++ Sbjct: 256 DLENRRVVWPDSKTGGMSK-PMSEEAYRLLSTAPRQPGARYVLPSPRNPLTHLTYGEYYG 314 Query: 275 AKA---TKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 AGV HG+R SAT A++G M KTV Y D Sbjct: 315 GWTRTLKAAGVPHVGTHGIRHRSATDIANSGIPVKVGMVLTAHKTVTMFMRYIHTED 371 >gi|262067772|ref|ZP_06027384.1| integrase/recombinase, phage integrase family [Fusobacterium periodonticum ATCC 33693] gi|291378498|gb|EFE86016.1| integrase/recombinase, phage integrase family [Fusobacterium periodonticum ATCC 33693] Length = 329 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 42/265 (15%), Positives = 104/265 (39%), Gaps = 18/265 (6%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----KHT 129 LI ++ +L+ + + + + ++ +T+ + S + S+ K T Sbjct: 51 LIKQFVIQKKVQNLSDRTIKYYVLTLELFNSFLRNKPFQTVTSNDVISFLGSKMYKDKVT 110 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 ++A ++ F + +++ NP V++ E + ++ ++ + + ++ Sbjct: 111 STTANNLRRNLSSFFTFLQEFDFILKNPMARVKKINEVREKKKAFSATELAKIRKVFT-N 169 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPD-------G 240 + R FE LL+SG+R C + + ++ +K TV + Sbjct: 170 KRDRAIFELLLHSGIRVGGLCGLKFDDINFSDKTLTV-FEKGRKYRTVYFNEEAEFYLKE 228 Query: 241 FMKLLAMTPIGKETFFIN--NDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATIS 297 +++ ++ F++ +K+ + I + +AGV N H R+ AT + Sbjct: 229 YLEERQHLDTKEKHIFVSLLKPYKKLQISGVEIMIRQAGKEAGVNNVHPHRFRRTFATTA 288 Query: 298 ADAGATAHELMATYGWKTVDQAETY 322 G + ++ G K +D + Y Sbjct: 289 WKKGMSIIDIKNLLGHKKLDTTQIY 313 >gi|183981830|ref|YP_001850121.1| integrase/recombinase XerC [Mycobacterium marinum M] gi|183175156|gb|ACC40266.1| integrase/recombinase XerC [Mycobacterium marinum M] Length = 302 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 39/267 (14%), Positives = 89/267 (33%), Gaps = 26/267 (9%) Query: 86 SLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRKHTPSSA---IQFLTSM 140 + ++R ++ ++ D R ++ +RS + + ++ + +++ Sbjct: 21 GRSAHTRRAYLGDLRSLLDYLAGRGADLRALSLPVLRSWLATAAGAGAARTTLARRTSAV 80 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS--------QP 192 + WAVR+ +A +P ++ PK ++ + G+ + Sbjct: 81 KAFTAWAVRRGLLATDPAARLQVPKAHRTLPAVLRQDQALAAMTAAKSGAQQGDPLALRD 140 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-----ELPDGFMKLLA- 246 RL E L +G+R S+ C + + ++ G + LA Sbjct: 141 RLIVELLYATGIRVSELCGLDIDDVDTGHRLVRVLGKGNKQRTAPFGQPAAEALQAWLAD 200 Query: 247 -----MTPIGKETFFINNDKQKMNATQFSIWFKA--KATKAGVNKSAHGVRKFSATISAD 299 T + ++++ Q A + HG+R +AT + Sbjct: 201 GRPALATAESGPALLLGARGRRLDVRQARTVVHQTVAAVDGAPDMGPHGLRHSAATHLLE 260 Query: 300 AGATAHELMATYGWKTVDQAETYTKGA 326 GA + G ++ + YT A Sbjct: 261 GGADLRVVQELLGHSSLATTQLYTHVA 287 >gi|323170898|gb|EFZ56548.1| integrase domain protein [Escherichia coli LT-68] Length = 230 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 39/216 (18%), Positives = 80/216 (37%), Gaps = 17/216 (7%) Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 +SA +++ F+ A+ + ++ NP + K + R E ++ +++ S Sbjct: 10 KAASAKLIRSTLSDAFREAIAEGHITTNPVAATRAAKSEVRRSRLTADEYLKIYQAAESS 69 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP---DGFMKLL 245 RLA E + +G R D C + + ++ KTG I + + D + Sbjct: 70 PCWLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAIPITLHVDALGISM 129 Query: 246 AMT------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-----NKSAHGVRKFSA 294 T +G ET + ++ +++ S +F +G+ + H +R + Sbjct: 130 KETLDKCKEILGGETIIASTRREPLSSGTVSRYFMRARKASGLSFEGDPPTFHELR-SLS 188 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 + + G K+ A Y DR R Sbjct: 189 ARLYEKQISDKFAQHLLGHKSDTMASQY--RDDRGR 222 >gi|237797828|ref|ZP_04586289.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv. oryzae str. 1_6] gi|331020678|gb|EGI00735.1| site-specific tyrosine recombinase XerC [Pseudomonas syringae pv. oryzae str. 1_6] Length = 290 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 37/259 (14%), Positives = 91/259 (35%), Gaps = 19/259 (7%) Query: 85 GSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIR---SGVESRKHTPSSAIQFLT 138 ++ ++ ++ ++ +K+ + ++ +H+R + + + S + L+ Sbjct: 7 RQVSPHTLEAYRRDLGKVLAYCQKAQLSSWNELDIQHLRSFTARQHQQGQSSRSLARMLS 66 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRL 194 ++R +K+ R+ A +P + PK + + + Q E + Sbjct: 67 AVRGFYKYLNREAICAHDPANGLSPPKGERRLPKTLDTDRTAQLLDGGVEDDFLAHRDHA 126 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV--------ELPDGFMKLLA 246 E SGLR S+ + L + I+ G+ V + ++ L A Sbjct: 127 ILELFYSSGLRLSELTGLNLDQLDLSDGLIQVLGKGSKTRVLPVGSKARRALETWLPLRA 186 Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAK-ATKAGVNKSAHGVRKFSATISADAGATAH 305 + + F+ +++ + KA + G N H +R A+ ++ Sbjct: 187 LANPQDDAVFVTRQGKRLGPRAVQVRLKAAGERELGQNLHPHMLRHSFASHLLESSQDLR 246 Query: 306 ELMATYGWKTVDQAETYTK 324 + G + + YT Sbjct: 247 AVQELLGHADIKTTQIYTH 265 >gi|145633727|ref|ZP_01789452.1| tyrosine recombinase [Haemophilus influenzae 3655] gi|144985386|gb|EDJ92213.1| tyrosine recombinase [Haemophilus influenzae 3655] Length = 295 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 39/260 (15%), Positives = 92/260 (35%), Gaps = 21/260 (8%) Query: 85 GSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIRSGVESRKH---TPSSAIQFLT 138 ++ ++ +++ D +I+ + + + ++T +R + K S L+ Sbjct: 16 RQMSPHTLTNYQHQLDATIKILAQQDIYAWAQVTPSVVRFILAESKKQGLKEKSLALRLS 75 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS---FWSEGSQPRLA 195 ++R + V+Q + +NP + PK+ + E +QQ + + R Sbjct: 76 ALRRFLSFLVQQGELKVNPATGISAPKQGKHLPKNMDGEQVQQLLANDSKEPIDIRDRAI 135 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------ELPDGFMKLLA 246 E + SGLR S+ + + + ++ G V + + Sbjct: 136 LELMYSSGLRLSELQGLDLNSINTRVREVRVIGKGNKERVVPFGRYASHAIQEWLKVRAL 195 Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATA 304 P E F++ +++ + + G+N + H +R AT +A + Sbjct: 196 FNP-KDEALFVSQLGNRISHRAIQKRLETWGIRQGLNSHLNPHKLRHSFATHMLEASSDL 254 Query: 305 HELMATYGWKTVDQAETYTK 324 + G + + YT Sbjct: 255 RAVQELLGHSNLSTTQIYTH 274 >gi|261746151|gb|ACX94072.1| putative integrase [Acinetobacter genomosp. 3] Length = 203 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 35/172 (20%), Positives = 68/172 (39%), Gaps = 10/172 (5%) Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-- 218 +ERPK + +KE++ + S + R + +GLR S++ + ++ + Sbjct: 18 IERPKTPRKLPNVLSKEEIIKIVSVLK-NLKHRTVISLIYSAGLRISEAVKMEIRDIDFN 76 Query: 219 NNIFSIKTQKTGT----IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFK 274 I +IK K +++++ ++ +A K F +K + F Sbjct: 77 RKIINIKDAKGKKDRQTALSLKIEKLLLEYMAFYKPSK-YIFEGAGGEKYSERSIQQVFT 135 Query: 275 AKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 +AG+ K S H +R AT +AG + G ++ E YT Sbjct: 136 IAVKEAGIKKEVSVHSLRHSYATHLHEAGTDIKIIQELLGHESTKTTEIYTH 187 >gi|227539350|ref|ZP_03969399.1| possible tyrosine recombinase [Sphingobacterium spiritivorum ATCC 33300] gi|227240806|gb|EEI90821.1| possible tyrosine recombinase [Sphingobacterium spiritivorum ATCC 33300] Length = 301 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 44/256 (17%), Positives = 92/256 (35%), Gaps = 19/256 (7%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFD-YRKITTKHIRSGVESR----KHTPSSAIQFLTS 139 A N+ S++ Y ++ + +I I + + + K + S + + Sbjct: 39 QRYAGNTIRSYKDYASIFLKHVSKYPSLEEIPLSDIEAFINEKVQNGKISVSYQKGLVGA 98 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRK-TEGIRPWTKEDMQQFKSFWSEGSQPRLAFEF 198 ++ +++ + ++ L PKR ++ + ++KE+++ ++ + + Sbjct: 99 IKKMYELILDKKIQ-----LDYLYPKRSFSKLPKFFSKEEVRNILDN-TQNLKHKAILMT 152 Query: 199 LLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAM---TPIGKE 253 + GLR S+ ++ ++ + I I K V LPD + L KE Sbjct: 153 IYSCGLRLSELLNLKIKDIKSSDGIIRIHQSKGNKDRIVSLPDKLLATLRHYYQAFKPKE 212 Query: 254 TFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATY 311 F K + + K KA V S H +R AT +G + Sbjct: 213 YLFEGERGGKYSERSVQLILKKALIKANVQSEGSVHTLRHSYATHLIQSGIDIRIVKELL 272 Query: 312 GWKTVDQAETYTKGAD 327 G + + YT D Sbjct: 273 GHENIKTTMIYTHITD 288 >gi|167752616|ref|ZP_02424743.1| hypothetical protein ALIPUT_00870 [Alistipes putredinis DSM 17216] gi|167659685|gb|EDS03815.1| hypothetical protein ALIPUT_00870 [Alistipes putredinis DSM 17216] Length = 368 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 39/297 (13%), Positives = 94/297 (31%), Gaps = 22/297 (7%) Query: 41 STFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD 100 F Y + + K+ TL Y + + ++ ++ +YF Sbjct: 62 PDFYDRYSPHAYIDYSRVYVRHPKPKREYTLP---KGYLELLEQKRYSPSTVKTYRAYFS 118 Query: 101 QIIRKSGDFDYRKITTKHIRSGV----ESRKHTPSSAIQFLTSMRVLFKWAV--RQEYVA 154 + + ++ I + +K + S + +++ ++ +++Y Sbjct: 119 DFMEYHKGRNIDRLKVPDINKYILYLVNEKKISVSQQNMRINAIKFYYEQVKGGKRQYYG 178 Query: 155 INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGV 214 + R K +K ++++ + S + + +GLR S+ Sbjct: 179 -----GITRAKEYKSLPEVLSKNEIKRILAQIS-NIKHHCMISLVYSAGLRRSELLNLTP 232 Query: 215 QHLQNNIFSIKTQKTGTI-----ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF 269 Q + + S++ G ++ +L + K F ++ +A+ Sbjct: 233 QDINSETMSVRIMGKGKKCRYSLLSPKLLEELRHYFREYRPQKWLFEGETPGEQYSASAL 292 Query: 270 SIWFKAKATKAGVNKSAHG--VRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 K A +AG+ H +R AT + G H + G + Y Sbjct: 293 VKVLKEAAHRAGIKHRVHVHMLRHSFATHLLEQGTDLHTIQELLGHNDIKTTTIYLH 349 >gi|119469654|ref|ZP_01612523.1| site-specific recombinase [Alteromonadales bacterium TW-7] gi|119446901|gb|EAW28172.1| site-specific recombinase [Alteromonadales bacterium TW-7] Length = 314 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 38/268 (14%), Positives = 94/268 (35%), Gaps = 30/268 (11%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134 +++Y + +L YF+++ F + + + +++ + + Sbjct: 37 VNQYVSQLGFAAL----------YFNKLCDDW--FGVQAEHIRRYSMALRAKQLSGRTIS 84 Query: 135 QFLTSMRVLFKWAVRQEYVA----INPCLSVERPKRKTEGIRPWTKEDMQQFKSF---WS 187 L+ +R L+K+ + NP ++ PK + + M + Sbjct: 85 LKLSCIRSLYKFLKAKNIAQQSHYHNPATGIKGPKFAKPLPKNLDVDQMARLLEIPDDDP 144 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVEL----PDGFM 242 + + E + SGLR S+ A +Q + I + G + + + Sbjct: 145 LAIRDKAMMELMYSSGLRISELVGANMQDINAKSGEILVRGKGNKERLIPVGTKALEALK 204 Query: 243 KLLAMTP----IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATI 296 K L + P + F+++ K +++ Q + + K G++ H +R A+ Sbjct: 205 KWLTVRPQFAKPDEPGVFLSSQKNRISIRQVRLRMQEWGIKQGISSQVHPHKLRHSFASH 264 Query: 297 SADAGATAHELMATYGWKTVDQAETYTK 324 ++ + G ++ + YT Sbjct: 265 ILESSGDLRAVQELLGHSSLSATQVYTH 292 >gi|319936094|ref|ZP_08010516.1| hypothetical protein HMPREF9488_01347 [Coprobacillus sp. 29_1] gi|319808881|gb|EFW05399.1| hypothetical protein HMPREF9488_01347 [Coprobacillus sp. 29_1] Length = 301 Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 30/272 (11%), Positives = 83/272 (30%), Gaps = 22/272 (8%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133 + Y + L + ++ +Q + + + + P + Sbjct: 6 VENYLNYCQYQKRLTGKTLKAYRIDLNQFYTYMQFKNLKNKKDISVYIQQLHTTYKPRTV 65 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVE-RPKRKTEGIRPWTKEDMQQFKSFWSEG--- 189 + + +++ + + +Q+++ NP ++ R K + T ++ Sbjct: 66 KRKIAAIKAFYTYLEKQDFLKENPFHKIDYRFKEPIRLPKTITLHELNHLYQSLYAYSKQ 125 Query: 190 ------SQPRLAFEFLLYSGLRCSDSCRAGVQH--LQNNIFSIKTQKTGTII-------T 234 ++ E L+ +G+R S+ + ++ N I + + I Sbjct: 126 TSNRVITRDIAILELLICTGIRVSEVSHLLKSNVFIRENTIIINGKGSKERIIYIDNQNL 185 Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKF 292 ++ + +L FFIN ++ ++ + H R Sbjct: 186 IQSLLSYQRLFQDEIEKSPYFFINRLGHHLSEQSIRFMIVKYCHLFHIDSHITPHMFRHT 245 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTK 324 AT+ + + G ++ + YT Sbjct: 246 FATMMLEEDVDIRYIQEILGHSSITTTQIYTH 277 >gi|260893196|ref|YP_003239293.1| integrase family protein [Ammonifex degensii KC4] gi|260865337|gb|ACX52443.1| integrase family protein [Ammonifex degensii KC4] Length = 391 Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 51/345 (14%), Positives = 106/345 (30%), Gaps = 49/345 (14%) Query: 11 VTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT- 69 V + +GK +Y + G R AL K R Sbjct: 17 VYLGKDENGKKLYRSQTVRGTR------------QDAERALAELLVKAHRGELGRAPRGL 64 Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH- 128 T+ L++ + + AH S N+ + + R G + ++T + + Sbjct: 65 TVAGLLNAWVE-AHRRSWRPNTLANKRTAARAWGRLIGHLEVERLTPADVELALARLAEE 123 Query: 129 -TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 PS+A + +S R +WA +++ + +P V P+ +T+ I PWT E+ +F + Sbjct: 124 YAPSTAKEVFSSFRQALRWARKRKLLHHDPTEGVPAPRGETQEITPWTGEEAARFLEYLE 183 Query: 188 EGSQPRLA---FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT--------------G 230 + + F L +G+R + Q + + ++T Sbjct: 184 KARMRKAYKAFFRLALATGMRLGELQALRWQDVDLKRGEVCVRRTYSEAGKCFHEPKTKK 243 Query: 231 TIITVELPD---------------GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKA 275 + + ++ + F ++ + Sbjct: 244 ARRRIPIDPVTTAWLREWRKEQLEERLRAGEGWADREGLVFTTRKGTVVDRDDLLRALRR 303 Query: 276 KATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319 +AGV H +R A++ + G +V Sbjct: 304 ACREAGVPGIRFHDLRHTHASLLLRQNVHPKVVQERLGHASVKTT 348 >gi|226227913|ref|YP_002762019.1| tyrosine recombinase XerC [Gemmatimonas aurantiaca T-27] gi|226091104|dbj|BAH39549.1| tyrosine recombinase XerC [Gemmatimonas aurantiaca T-27] Length = 324 Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 45/285 (15%), Positives = 90/285 (31%), Gaps = 39/285 (13%) Query: 85 GSLAVNSRISFESYFD----QIIRKSGDF-----DYRKITTKHIRSGVESRKHTPSSAIQ 135 L+ N+ ++ + G + + + + + R S + Sbjct: 30 RDLSPNTLQAYRRDLREFASWLAATHGIAGWEWNELTRTNIRGYMAHLTRRGLAKRSIAR 89 Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----- 190 L+++R ++W R E V +NP +V PK + + + + Sbjct: 90 QLSAVRSFYRWMHRDERVDVNPARAVGSPKLPRTLPAYLDRTQAETLMQHAATRAQSLEF 149 Query: 191 ---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFMKLLA 246 + E SGLR S+ + L +K + G V L D + L Sbjct: 150 TDVRNLAMLELFYSSGLRLSELRGVDLADLDLVSQQVKVRGKGRKERIVPLGDHAQRALR 209 Query: 247 MTPIGKETFFINNDKQKMNA---------TQFSIWFKAKATK-----------AGVNKSA 286 + ++ + ++ A+A + G + + Sbjct: 210 NYLVKRDALIAQASGGAVGRRVARGAVFLSERGARISARAVQHAMVTLMSAVSEGADLTT 269 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIR 330 H +R AT DAGA + G ++ + YT DR++ Sbjct: 270 HSLRHTFATHLVDAGADLRAVQELLGHASISTTQIYTHTSVDRLK 314 >gi|330963555|gb|EGH63815.1| integrase family protein [Pseudomonas syringae pv. actinidiae str. M302091] Length = 325 Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 50/314 (15%), Positives = 107/314 (34%), Gaps = 15/314 (4%) Query: 18 HGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISE 77 +G RK + + + S + G ++ ++++ + TTLK Sbjct: 9 NGTWRTKIRKKGYPSLSASF-DTKAEAQRWASEIEGDMSRKRFVDTREAESTTLKQAQDR 67 Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQF- 136 Y + + +R K G +I + + ++R S Sbjct: 68 YER--EVSAQKKGARQEKTRIKTWAESKYGTKSMAEIRSSDLAEYRDARLAEGMSTNTVR 125 Query: 137 --LTSMRVLFKWAVRQEYVA--INPCLSVERPKRKTEGIRPWTKEDMQQ-FKSFWSEGSQ 191 L + L+ A++ + NP + PK E R T +++ K+ + ++ Sbjct: 126 LSLALISHLYTVAIKDWGIEGLSNPVAKLRMPKGSRERDRRPTAKELAAVLKAASAIHAE 185 Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIG 251 + E + + +R + +H++ ++ K G+ V L LL P Sbjct: 186 MPVIIELAIETAMRRGELMTLRREHIRGKHVLLEDTKNGSRRLVPLSIRARALLDSLPAR 245 Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMAT 310 + + ++ S +F A V + H +R + + G + E + Sbjct: 246 IDGAVFS-----LSPHSVSQYFLKSCRAAKVTDLHFHDLRHEGTSRLFEKGFSIMEAASI 300 Query: 311 YGWKTVDQAETYTK 324 G KT+ + YT Sbjct: 301 TGHKTMSMLKRYTH 314 >gi|319404882|emb|CBI78483.1| integrase/recombinase XerD [Bartonella rochalimae ATCC BAA-1498] Length = 307 Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 44/286 (15%), Positives = 99/286 (34%), Gaps = 33/286 (11%) Query: 72 KWLISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH-----IRSGVES 125 +I + + + +V + ++++ K + + + S ++ Sbjct: 4 DAVIDRFLEMMSAERGASVCTLLAYQHDLQWAQNKLSSHSISFFSAQREDLINLLSLMQK 63 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 +S + L+++R F++ + +P ++ P++ + +++ M + F Sbjct: 64 AGCAATSQARRLSTLRQFFQFLYAEGLREDDPSSDIDSPRQGRPLPKIISEDAMAKLLDF 123 Query: 186 WSEGSQP--------------RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231 ++ ++ E L +GLR S+ VQ ++ I + G Sbjct: 124 AQLETEQAESGTQNYYRALRFQVLLEMLYATGLRISELVSLPVQAVRGKEQFILVRGKGE 183 Query: 232 IITVELPDG-----FMKLLAMTPIGKET----FFINNDKQKMNATQFSIW-FKAKATKAG 281 V L ++ L++ K+ F A QF K A +AG Sbjct: 184 KERVVLLSEKARQILLQWLSVRDQRKDATSIYLFPARSSTGYIARQFVARGLKDLAKRAG 243 Query: 282 V---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 + N S H +R A+ GA + G + + + YT Sbjct: 244 IQSENFSPHVLRHAFASHLLQNGADLRAVQHLLGHRDISTTQIYTH 289 >gi|312951578|ref|ZP_07770474.1| tyrosine recombinase XerC [Enterococcus faecalis TX0102] gi|310630544|gb|EFQ13827.1| tyrosine recombinase XerC [Enterococcus faecalis TX0102] Length = 299 Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 39/265 (14%), Positives = 94/265 (35%), Gaps = 25/265 (9%) Query: 85 GSLAVNSRISFE---SYFDQIIRKSGDFDY---RKITTKHIRSGVESRKHTPSSAIQFLT 138 + ++ +++ +F ++ SG+ +Y + + S + ++++ +S + + Sbjct: 18 RGYSEKTKKAYQEDIQHFFSFLKTSGNDNYLTVEHLEVRAYLSELYDQEYSRNSISRKIA 77 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRL 194 S+R +++ ++ E + NP V K++ R + +++M + + Sbjct: 78 SLRSFYQFLLKNEAIQENPFSYVHMKKKQLRLPRFFYEKEMDALFESAQGEQPLDLRNQA 137 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-ITVE------------LPDGF 241 E L +G+R S+ V + + G V L +G Sbjct: 138 LLEVLYGTGIRVSECANLTVDAVDFQASVLLVHGKGNKDRYVPFGSFAQDALKDYLENGR 197 Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299 L+ F+N+ +++ T K+ +N H +R AT + Sbjct: 198 ALLMTKYQKKHPYVFVNHHGEQITPTGIEYVLNQLIKKSSLNVEIHPHMLRHTFATHLLN 257 Query: 300 AGATAHELMATYGWKTVDQAETYTK 324 GA + G + + Y Sbjct: 258 NGADMRTVQELLGHANLSTTQIYAH 282 >gi|320105374|ref|YP_004180964.1| integrase family protein [Terriglobus saanensis SP1PR4] gi|319923895|gb|ADV80970.1| integrase family protein [Terriglobus saanensis SP1PR4] Length = 394 Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 68/372 (18%), Positives = 133/372 (35%), Gaps = 40/372 (10%) Query: 11 VTKERTRHGKIIYYFRKGH----GRRI-RLPYPHESTFIPAYMSA---LTGSTPKREYIN 62 +T+E+ ++G ++ +R G+RI R + + +A + G I Sbjct: 13 LTREKRQNGSDVWVYRWRENGSSGQRINRKRIVGTVADLRSKAAAQKLVEGLRLDINAIV 72 Query: 63 SPRKKPTTLKWLISEYRKS--AHWGSLAVNSRISFESYFDQIIRK-SGDFDYRKITTKHI 119 T+ LI+ Y ++ A + +R + + ++II G + + + T I Sbjct: 73 QTAPHSYTVAELITHYLETELAEKANKTALTRKVYRYHLEKIILPVWGKYRLQDVRTVAI 132 Query: 120 RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179 +ESR PSS + LF+ +R E+V NP V + ++ T+ ++ Sbjct: 133 ERWLESRPGAPSSKAKTRNIFSTLFRHGMRYEWVFSNPIELVRQGAKRLVEPDILTEAEI 192 Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-------------- 225 + E R +GLR + Q + +I+ Sbjct: 193 RTLIEGLDE--PARTMVLVAAVTGLRRGELFGLRWQDVDFQGLTIRIACSLVDQVEGAPK 250 Query: 226 --TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFS---IWFKAKATKA 280 T +T ++ EL + T E+ ++ + + + I + A A Sbjct: 251 TVTSRTSIPLSPELARALGEWKRTTHFTGESDWVFSSPASLGKQPYWPGMILRRHIAPAA 310 Query: 281 ---GVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIK 334 G+NK H R+ +AT+ AGA+ + Y + + Sbjct: 311 QRLGINKKIGWHTFRRTTATLLFSAGASVKTTQELMRHASPSITLGLYAQAVTEDKRAAH 370 Query: 335 N--SRRISSVVD 344 N S+ I+ + D Sbjct: 371 NALSKAIAGMTD 382 >gi|300173202|ref|YP_003772368.1| tyrosine recombinase XerC [Leuconostoc gasicomitatum LMG 18811] gi|299887581|emb|CBL91549.1| tyrosine recombinase XerC [Leuconostoc gasicomitatum LMG 18811] Length = 303 Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 38/281 (13%), Positives = 93/281 (33%), Gaps = 32/281 (11%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQ----IIRKSGDFDYRKITTKHIRSGVE--- 124 + L Y +S + + ++ S D+ + + G +++ + +R + Sbjct: 6 QQLYQVYIESER--QYSPLTLKAYLSDIDEFVIFLTKNGGFINFKTVQILDVRVYLNDLY 63 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 RK ++ + ++S+R+ +++ + ++V NP +V K + + + +M Sbjct: 64 ERKLARTTISRKISSLRMFYQFMIANQFVTDNPFDNVALRKHENHLPEFFYETEMTTLFD 123 Query: 185 FWSEG-----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELP 238 + EFL +G R ++ L + + K V Sbjct: 124 VAYNPEDLLWQRNAAILEFLYATGARVAEIANLMTTQLDFSQRLVLIHGKGNKDRYVPFG 183 Query: 239 DGFMKLLA-----------MTPIGKETFFINNDKQKMNATQFSI----WFKAKATKAGVN 283 + L+ + + F+N+ + + + K ++ Sbjct: 184 HFAAQALSQYLKETRPKLIAKQVPHDFVFVNHRGEPITTAGITYILNELMKRSTLTGKIH 243 Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R AT + GA + G + + YT Sbjct: 244 --PHMLRHTFATHLLNNGADMRTVQELLGHVNLSTTQMYTH 282 >gi|300114658|ref|YP_003761233.1| integrase family protein [Nitrosococcus watsonii C-113] gi|299540595|gb|ADJ28912.1| integrase family protein [Nitrosococcus watsonii C-113] Length = 321 Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 50/274 (18%), Positives = 97/274 (35%), Gaps = 25/274 (9%) Query: 62 NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISF---ESYFDQIIRKSGDFDYRKITTKH 118 ++ + T ++ +Y++ A+ ++ ES + GD+ IT Sbjct: 51 DTTEAQRITFNTILDKYKQ------RALITKRGIAQEESRIKYLKEWLGDYSLAGITPAV 104 Query: 119 IRSGVESRKHTPSS--AIQFLTSMRVLFKWAV-RQEYVAI--NPCLSVERPKRKTEGIRP 173 + + R + ++ L+ + + +A+ Y NP + PK R Sbjct: 105 LSKFRDWRGLSVAAQTVKHDLSLISRIINYAIKDLGYSLPYGNPVQQIRMPKIPRGRTRR 164 Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGT 231 + + SE QP F L + +R + + + I KTG Sbjct: 165 LEPGEQELLLENASESLQP--VILFALETAMRRGEIANMEWRDVDLKQRTLHIPETKTGI 222 Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVR 290 T+ L +K+L P+G F K++A + F KAG+ + H +R Sbjct: 223 PRTIPLSSEAIKILKEIPLGFGPIF------KVHADSMTKAFDRATNKAGIEDLRFHDLR 276 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK 324 + + + G E+ + G K + YT Sbjct: 277 HEATSRLFEKGLNHTEVASITGHKDLKMLLRYTH 310 >gi|257881842|ref|ZP_05661495.1| integrase [Enterococcus faecium 1,231,502] gi|294619302|ref|ZP_06698771.1| integrase [Enterococcus faecium E1679] gi|257817500|gb|EEV44828.1| integrase [Enterococcus faecium 1,231,502] gi|291594462|gb|EFF25870.1| integrase [Enterococcus faecium E1679] Length = 382 Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 69/382 (18%), Positives = 141/382 (36%), Gaps = 58/382 (15%) Query: 14 ERTRHGKIIYYFRK--GHGRRI-RLPYPHESTFI--PAYMSALTGSTPKREYINSPRKKP 68 + ++G+ +YF+ G + Y + F +AL+ + + P Sbjct: 7 YKKKNGEKAWYFKTYLGIDPLTGKKKYTTKRGFRTQKEAKTALSRLELELQKTGMPTSTN 66 Query: 69 TTLK-----WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123 TT K WL Y+K+ S + ++I F + I K G+ KI T + + V Sbjct: 67 TTFKEAAELWL-ESYKKTVKESSYS-RTKIIFNKH---IYPKFGNIKLSKINTAYCQKVV 121 Query: 124 ESRKHTPSSAIQ--FLTSMRVLFKWAVRQEYVAINPCLS--VERPKRKTEG-IRPWTKED 178 +S F+ M +FK+A+ + NP L+ + +P+ KTE ++ +TKE Sbjct: 122 NDWSEKGTSKQYPLFINYMNKVFKYAINIGLTSDNPTLNLLIPKPQIKTEKKLKLYTKEQ 181 Query: 179 MQQFKSFWSEGS------QPRLAFEFLLYSGLRCSDSCRAGVQHL--------------- 217 ++ F + S+ + F L +SG R + ++ Sbjct: 182 LELFLNEVSQEQNPYFKNRDYTLFRLLAFSGCRIGEILALTWDNINFKTNEMAIKKTVAR 241 Query: 218 -------------QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM 264 ++N +KT + + L + F N++ Sbjct: 242 SDKYYISETPKTKKSNRIIYLDEKTIKQLKFWKLEQRKYLFQLGFTKANYLFTNDENNFT 301 Query: 265 NATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETY 322 + + +AG+ HG R A++ +AGA E+ G + +TY Sbjct: 302 INQSVAERYNIYRERAGLPYIGLHGFRHTHASMLYEAGADHKEVQERMGHANIKTTMDTY 361 Query: 323 TKGADRIRLGIKNSRRISSVVD 344 T + + + ++++++ ++ Sbjct: 362 THITNSKK--EETTQKLTNYIN 381 >gi|120435311|ref|YP_860997.1| phage integrase family protein [Gramella forsetii KT0803] gi|117577461|emb|CAL65930.1| phage integrase family protein [Gramella forsetii KT0803] Length = 385 Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 43/263 (16%), Positives = 103/263 (39%), Gaps = 14/263 (5%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDY--RKITTKHIRSGVESRKHTPSS 132 I+ YR + ++ ++ ++ ++ ++ + ++ + + + + ++ SS Sbjct: 93 INAYRVYMKGLRYSQSTIKTYCTFTEKFLKFHNYKTTFSQNDVSRFMEAEIALKSYSISS 152 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192 Q +++++ F+++ + E+ + RPK+ +KE++ + + Sbjct: 153 HRQCISALKHYFEFSDQAEFEIS----ELVRPKKSRFLPTVLSKEEIIDLL-RLTRNLKH 207 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTIITVELPDGFMKLLA---M 247 R + SGLR + ++ + + IK K V L + F+ LL Sbjct: 208 RCILALIYSSGLRVGELINLHLKDIDIDRKQILIKQAKGRKDRYVMLAESFLPLLYNYLQ 267 Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAH 305 T K F D +K +++ + K +A ++K + H +R AT + G Sbjct: 268 TYEPKRYFTEGYDNKKYSSSAIRSFLKDSCRRAKISKKVTPHTLRHSFATHMLENGTDLR 327 Query: 306 ELMATYGWKTVDQAETYTKGADR 328 + G + YT A + Sbjct: 328 YIQELLGHSKPETTMIYTHVAKK 350 >gi|16272618|ref|NP_438836.1| site-specific tyrosine recombinase XerC [Haemophilus influenzae Rd KW20] gi|260581486|ref|ZP_05849296.1| tyrosine recombinase XerC [Haemophilus influenzae RdAW] gi|260582981|ref|ZP_05850764.1| tyrosine recombinase XerC [Haemophilus influenzae NT127] gi|1175024|sp|P44818|XERC_HAEIN RecName: Full=Tyrosine recombinase xerC gi|1573676|gb|AAC22336.1| integrase/recombinase (xerC) [Haemophilus influenzae Rd KW20] gi|260091846|gb|EEW75799.1| tyrosine recombinase XerC [Haemophilus influenzae RdAW] gi|260093965|gb|EEW77870.1| tyrosine recombinase XerC [Haemophilus influenzae NT127] Length = 295 Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 39/260 (15%), Positives = 88/260 (33%), Gaps = 21/260 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITT------KHIRSGVESRKHTPSSAIQFLT 138 ++ ++ +++ D I+ D T + I + + + S L+ Sbjct: 16 RQMSPHTITNYQHQLDATIKILAQQDIHSWTQVTPSVVRFILAESKKQGLKEKSLALRLS 75 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS---FWSEGSQPRLA 195 ++R + V+Q + +NP + PK+ + E +QQ + + R Sbjct: 76 ALRRFLSFLVQQGELKVNPATGISAPKQGRHLPKNMDGEQVQQLLANDSKEPIDIRDRAI 135 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------ELPDGFMKLLA 246 E + SGLR S+ + + + ++ G V + + Sbjct: 136 LELMYSSGLRLSELQGLDLNSINTRVREVRVIGKGNKERVVPFGRYASHAIQEWLKVRAL 195 Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATA 304 P E F++ +++ + + G+N + H +R AT +A + Sbjct: 196 FNP-KDEALFVSQLGNRISHRAIQKRLETWGIRQGLNSHLNPHKLRHSFATHMLEASSDL 254 Query: 305 HELMATYGWKTVDQAETYTK 324 + G + + YT Sbjct: 255 RAVQELLGHSNLSTTQIYTH 274 >gi|17986820|ref|NP_539454.1| integrase/recombinase [Brucella melitensis bv. 1 str. 16M] gi|17982454|gb|AAL51718.1| integrase/recombinase [Brucella melitensis bv. 1 str. 16M] Length = 116 Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 26/115 (22%), Positives = 49/115 (42%), Gaps = 2/115 (1%) Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290 + + + ++L TP ET + + + + A + K + HG+R Sbjct: 1 MFLPITPILSEVLEATPRQGETVLVTAYGEPFSPKSLTGRMADWTASAKLPKGFTLHGLR 60 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDS 345 K I A+ GA+ ++M T G + AE YT+ A++ RL R+ + + Sbjct: 61 KTLGKILAEGGASTRQIMDTLGHDDIAHAELYTREAEQARLATDGMSRVVRLKRN 115 >gi|270293959|ref|ZP_06200161.1| tyrosine type site-specific recombinase [Bacteroides sp. D20] gi|270275426|gb|EFA21286.1| tyrosine type site-specific recombinase [Bacteroides sp. D20] Length = 379 Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 40/207 (19%), Positives = 76/207 (36%), Gaps = 14/207 (6%) Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVE---RPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191 +L ++R AV ++Y+ +NP ++ +PKR T +++ + Sbjct: 165 YYLKTLRYCLNRAVSEDYITVNPMNKIKNEDKPKRNRTERDYLTIKELTRLVHTPFYNIL 224 Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQ-----NNIFSIKTQKTGTIITVELPDGFMKLLA 246 R AF F + GLR D + ++ N + SI +KT I++ L + + Sbjct: 225 LRKAFLFSCFCGLRHCDIIALRWEDIRYDENGNALLSIIQKKTKEAISLPL---CSEAIK 281 Query: 247 MTPIGKETFFINNDKQKMNATQFSIWF-KAKATKAGVNK--SAHGVRKFSATISADAGAT 303 P + + S +AG++K + H R AT+ G Sbjct: 282 HLPDRGNAPETEKVFAGLVSLGRSNVILHKWVEQAGISKHVTFHTARHTHATMMLTLGVD 341 Query: 304 AHELMATYGWKTVDQAETYTKGADRIR 330 + + G + + Y K D + Sbjct: 342 LYTVSKLLGHTNIQTTQIYAKLVDESK 368 >gi|227544652|ref|ZP_03974701.1| phage integrase/recombinase [Lactobacillus reuteri CF48-3A] gi|300909431|ref|ZP_07126892.1| phage integrase family integrase/recombinase [Lactobacillus reuteri SD2112] gi|227185377|gb|EEI65448.1| phage integrase/recombinase [Lactobacillus reuteri CF48-3A] gi|300893296|gb|EFK86655.1| phage integrase family integrase/recombinase [Lactobacillus reuteri SD2112] Length = 322 Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 39/262 (14%), Positives = 89/262 (33%), Gaps = 14/262 (5%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHT 129 I++Y + + + +++ + G +KITT+ +R + +SR + Sbjct: 47 YITDYLAAKQVEGCSEKTINYYQATLKMMFSYLG-KHVQKITTEDLRDYLGNYQQSRNSS 105 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 + F W ++ + +P + + K + ++ ED+++ + + Sbjct: 106 RVTIDNIRRIFSSFFSWLEDEDVIIKSPVRRIHKVKSSAKVKDTYSDEDLERLRDHCNS- 164 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG-----FMKL 244 + + L +G+R + + + G + D Sbjct: 165 ERDVAMIDILASTGMRIGELVHLNQNDINFDERECVVLGKGNKQRIVYFDARSKIHLQNY 224 Query: 245 LAMTPIGKETFFINND--KQKMNATQFSIWFKAKATKAGVNKS-AHGVRKFSATISADAG 301 LA F++ Q+M+ K +AG+ K H R+ AT + D G Sbjct: 225 LAKRKDANSALFVSLHVPHQRMSINGIENRLKNLGKRAGIAKVYPHKFRRTLATNAIDKG 284 Query: 302 ATAHELMATYGWKTVDQAETYT 323 ++ G + +D Y Sbjct: 285 MPIEQVQKLLGHERIDTTLHYA 306 >gi|227524410|ref|ZP_03954459.1| phage integrase family site specific recombinase [Lactobacillus hilgardii ATCC 8290] gi|227088641|gb|EEI23953.1| phage integrase family site specific recombinase [Lactobacillus hilgardii ATCC 8290] Length = 401 Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 49/368 (13%), Positives = 111/368 (30%), Gaps = 50/368 (13%) Query: 15 RTRHGKIIYYFRKG--HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72 R + Y F G +G+R R+ A + + ++ Sbjct: 23 RKKGNNWYYAFDTGTLNGKRSRIERSGGKKKKQAEAPLRQALQKYENDGSVAKLTNMNVQ 82 Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131 + ++ L N++I++ + + II K G+F R I +++ V T Sbjct: 83 QYFMYWYENYVQRELKPNTQINYLNIINKYIIPKIGNFRIRSIGPAALQNLVNDLGET-K 141 Query: 132 SAIQFLTSMRVLFKWAVRQ-----EYVAINPCLSVERPK------RKTEGIRPWTKEDMQ 180 A + + ++ K ++ + + +P + PK + ++ T + Sbjct: 142 LAKHTVQIIVMVIKEGFKKAVYPYQLIKEDPARYIIMPKYHDDERITRKKLKIITMNQYE 201 Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-----------------NNIFS 223 Q S + + + +G+R + C ++ Sbjct: 202 QILSITPPSNPFYIPLQIAFGTGMRRGEVCGLTWTNVDLNGHTIEVKQAMMQESKGKFSI 261 Query: 224 IKTQKTGTIITVELPDGFMKLLAMTPIGKE--------------TFFINNDKQKMNATQF 269 + + T + T+ + + + LL + + + Sbjct: 262 VTPKTTSSYRTISIGESLVDLLRQHKKHQMEERLRYGQYYHESNFVCTKENGIPVTPNTI 321 Query: 270 SIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGW----KTVDQAETYTKG 325 + G + H +R AT+ + GA ++ A G T+D T Sbjct: 322 KYQCDRIQKELGFPFNFHSLRHTHATMLLEHGANIKDIQARLGHSRIATTMDTYSHVTHK 381 Query: 326 ADRIRLGI 333 R + I Sbjct: 382 MQRQTVNI 389 >gi|210622505|ref|ZP_03293210.1| hypothetical protein CLOHIR_01158 [Clostridium hiranonis DSM 13275] gi|210154218|gb|EEA85224.1| hypothetical protein CLOHIR_01158 [Clostridium hiranonis DSM 13275] Length = 302 Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 49/291 (16%), Positives = 112/291 (38%), Gaps = 24/291 (8%) Query: 72 KWLISEYRKSAHWGS-LAVNSRISFESYFDQIIRKSGD-----FDYRKITTKHIRSGVES 125 LI EY + L++N+ S+ + + + D + + +E Sbjct: 12 DNLIKEYIEYIENKRKLSLNTVSSYRADLKKYKDYLEENNIDIKDVVETDILNYLVELEK 71 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + S+ + +S++ + + AI+P ++++PK K E + T+E+++ +F Sbjct: 72 NNTSVSTIARTTSSIKSFHDYLFFSKICAIDPAKNIKKPKIKKETVEILTEEEIEALLNF 131 Query: 186 WSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241 + S + + FE L +G++ S+ V+ + + SI + + L D Sbjct: 132 ENLDSNKLKRDKAIFEVLYGTGMKVSELIDLNVEDVDFEMGSITCSSSKNKRVIPLIDVT 191 Query: 242 MKLLA---------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHG--VR 290 K L + G+ F++ + K + KA ++K+ + +R Sbjct: 192 KKYLELYVNEARENVVADGENALFVSALGHRFTRQGLWKIIKKYSKKANIDKNINPTMLR 251 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGAD---RIRLGIKNSRR 338 A + GA + G + ++Y D R + +++ R+ Sbjct: 252 HSFAIHMINKGANIASVNKILGNTNLSSIQSYLSCIDQNMRKEMNLRHPRK 302 >gi|126663869|ref|ZP_01734864.1| putative tyrosine recombinase [Flavobacteria bacterium BAL38] gi|126624133|gb|EAZ94826.1| putative tyrosine recombinase [Flavobacteria bacterium BAL38] Length = 580 Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 42/267 (15%), Positives = 88/267 (32%), Gaps = 16/267 (5%) Query: 86 SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFK 145 + + ++ ++ F Q +R + +I+ + I + S SA + + + + Sbjct: 309 NYSSSTLRTYCGAFIQFLRYFAFRNPEEISREEIIRFLGSLMERGLSATSGHSMVNGV-Q 367 Query: 146 WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLR 205 + +Q + + RPK++ + T E+ +L +GLR Sbjct: 368 FYYQQVLGKRDFTFVLPRPKKEKKLPVVLTMEECLLIFKVVDNPKH-KLLLLIGYGAGLR 426 Query: 206 CSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDGF---MKLLAMTPIGKETFFINND 260 S+ + + + +K K V LP ++L GK F Sbjct: 427 VSEIVSLKWSDILFEEHKIHVKNAKGKKDRMVMLPYSIVSSLQLYRELYKGKLYVFEGQF 486 Query: 261 -KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVD 317 + + + +G+ K + H +R AT + G + G ++ Sbjct: 487 AGEPYSTGSVQQVMRTALKLSGLEKKATVHTLRHSFATHLLENGTDIRYIQQFLGHSSIK 546 Query: 318 QAETYTKGADRIRLGIKNSRRISSVVD 344 YT L +I S +D Sbjct: 547 TTTVYTH------LTKTAVDKIQSPLD 567 >gi|330836614|ref|YP_004411255.1| Tyrosine recombinase xerC [Spirochaeta coccoides DSM 17374] gi|329748517|gb|AEC01873.1| Tyrosine recombinase xerC [Spirochaeta coccoides DSM 17374] Length = 310 Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 48/286 (16%), Positives = 95/286 (33%), Gaps = 36/286 (12%) Query: 85 GSLAVNSRISFES-------YFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSSAIQF 136 L+ ++ ++ + ++ D I + E RK +P + + Sbjct: 17 KGLSAHTEKAYRHDLFVFGEFLEKFSISVHDVSPSDI-RSFLVWLPERRKDFSPGTVQRL 75 Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-WSEGSQPR-- 193 +++ + + VR+ + NP + K + ++ + W++ S R Sbjct: 76 KSTINGFYTYVVRRGKIEKNPVALISLRSASRRLPTVLEKSETERLLNLPWNDFSSLRDV 135 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDGFMKLL------- 245 L L +G R S+ V L+ I K G V L KLL Sbjct: 136 LILNLLYSTGCRRSELLAIDVDDLETGQERILIHGKGGRERYVFLTPRVTKLLGKYLSER 195 Query: 246 -----AMTPIGKE-----TFFINND---KQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290 + P KE ++N ++++ + F + ++K + H +R Sbjct: 196 KELLSRLEPAEKEGADWNALLLSNGRRKGKRLSTGIITSIFGKYKRELEIHKAFTPHVLR 255 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKN 335 AT D A + G + + YT A+R+R Sbjct: 256 HTFATHLLDNDAGIRTVQELLGHVNLSTTQIYTHVSAERLRKVYDA 301 >gi|310766358|gb|ADP11308.1| site-specific tyrosine recombinase XerC [Erwinia sp. Ejp617] Length = 351 Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 44/289 (15%), Positives = 100/289 (34%), Gaps = 32/289 (11%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFE---SYFDQIIRKSGDFDYRKITTKHIRSGVE-- 124 TL+ L + + + + F G +++ + + Sbjct: 20 TLRRLAESWLAHLAAAGRSARTVQGYGERVRAFLAWCELRGITYAPQVSLAVLEAYQRWL 79 Query: 125 ---SRKHTPSSA----IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI-RPWTK 176 R A L+++R+L +W +++ ++ NP +E PK + + +++ Sbjct: 80 QSYRRADGRRLAVNGQRHLLSAIRMLLRWLLKRHHILYNPAELLELPKEERRLPAQVFSE 139 Query: 177 ED----MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTG 230 E+ +Q + G + R E L +G+R ++ + + + +++ K G Sbjct: 140 EETRRVLQSLDAGTPPGLRNRAILELLWSTGIRRTELAGLLLSDVDFTRGVVNVRRGKGG 199 Query: 231 TIITVEL----PDGFMKLLA------MTPIGKETFFINNDKQKMNATQFSIWF-KAKATK 279 V + + L FI++ + + +A Sbjct: 200 KDRVVPVGHAALMWLARYLKDVRPRLAQRFDSGHLFISHKGTGLAHGTLTAMAGRAIREG 259 Query: 280 AGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 A + K+ H R AT + GA + A G + ++ + YT+ A Sbjct: 260 AHLKKAGACHIFRHSMATQMLENGADTRHIQAILGHEKLETTQIYTRVA 308 >gi|295675162|ref|YP_003603686.1| tyrosine recombinase XerC [Burkholderia sp. CCGE1002] gi|295435005|gb|ADG14175.1| tyrosine recombinase XerC [Burkholderia sp. CCGE1002] Length = 307 Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 47/289 (16%), Positives = 88/289 (30%), Gaps = 33/289 (11%) Query: 75 ISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTP 130 I+ Y H L+ ++ + ++ + +T IR V T Sbjct: 7 IAAYLSHLEHERRLSEHTLRGYTHELAELKLLAKGRPLESLTAVDIRGAVARAHAGGLTA 66 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK----SFW 186 S L++ R ++W + NP +V PK+ + + +D + + Sbjct: 67 RSIGHRLSAWRAFYRWLAGHVELPANPVAAVRAPKQAKTLPKALSVDDTARLMDSPPADS 126 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRA-------------GVQHLQNNIFSIKTQKTGTII 233 EG + E SGLR ++ G L + + K Sbjct: 127 PEGLRDHAMLELFYSSGLRLAELVGLDVRFADVDGYRSAGWLKLDSGEVEV-LGKGNRRR 185 Query: 234 TVELPDGFMKLLAMTPIGKE--------TFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284 V + + L +E F++ +++ K A AG+ Sbjct: 186 VVPVGSKAVAALNAWLAVRERMVRHDPHPLFLSARGNRLSPNVVRERVKRAALAAGIPAN 245 Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 H +R AT + + G ++ + YT G D L Sbjct: 246 VHPHVLRHSFATHVLQSSGDLRAVQELLGHASITATQVYT-GLDFQHLA 293 >gi|260438241|ref|ZP_05792057.1| tyrosine recombinase XerD [Butyrivibrio crossotus DSM 2876] gi|292809434|gb|EFF68639.1| tyrosine recombinase XerD [Butyrivibrio crossotus DSM 2876] Length = 306 Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 34/280 (12%), Positives = 94/280 (33%), Gaps = 27/280 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKHTPSSAIQFLTSMRV 142 L + ++++ Q ++ +T + + + + + + + + S++ Sbjct: 19 KRLDRKTLNAYKTDLKQFSQQLHSISIEAVTPDMLENYISHLHQSYKSKTVKRKIASLKA 78 Query: 143 LFKWAVRQEYVAINPCLSVE-RPKRKTEGIRPWTKEDMQQFKS------FWSEGSQPR-- 193 F + +E + NP + + + + ++ F + ++ + R Sbjct: 79 FFHYLKYKEIIDRNPFDKIHVKFREPVILPKTIPLRTVETFLATIYHQRNCAKTTYQRRN 138 Query: 194 -----LAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKT-------GTIITVELPD 239 E L +G+R S+ C V + + I + + G + + Sbjct: 139 AIRDIAVIELLFSTGIRISELCSLNVNDVNLQDGTILIYGKGSKERCMHIGNDKVLSVLL 198 Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS 297 + + ++ + FF+N + ++ + A + + H R AT Sbjct: 199 EYKQEYSIEIQNCKHFFVNQSGRFLSDQAVRRMINKYSALAAIELHITPHMFRHTFATCL 258 Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 +A + G +++ E YT A + I ++ Sbjct: 259 LEADVDIRYIQEMLGHSSINITEIYTHVAMSKKKDILTTK 298 >gi|225873175|ref|YP_002754634.1| phage integrase family protein [Acidobacterium capsulatum ATCC 51196] gi|225792791|gb|ACO32881.1| phage integrase family protein [Acidobacterium capsulatum ATCC 51196] Length = 425 Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 59/313 (18%), Positives = 111/313 (35%), Gaps = 25/313 (7%) Query: 50 ALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF 109 A T S I+ P ++ + + + + + + + ++ G Sbjct: 99 AATHSARILASISKVHDAPAIIETAVQAFLANCETNGVREPTIRKYRNSLRRLATFMGSK 158 Query: 110 D---YRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK- 165 D R +T + S SR+ P ++++ L ++R F + + ++ N L ++ PK Sbjct: 159 DIHYVRDVTVTLLDSFRASRELAPITSLKELETLRAFFSYCMARDLCKANIALMIKGPKI 218 Query: 166 RKTEGIRPWTKEDMQ-------QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ 218 + P+T E+++ QF E + L ++ LR SD + Sbjct: 219 VSPNDVEPYTPEEVELIIAATQQFGRNAYERKRALAIILTLRFTALRISDVAVLRRDRIS 278 Query: 219 NNIFSI----KTQKTGTIITVELPDGFMKLLAMTPIGKET-------FFINNDKQKMNAT 267 + K + + +P + L P+ +E F+ + T Sbjct: 279 KEGGRWVVFIRATKNNKRVYLPIPREMKEALDNVPVPREAMADCPYYFWSGKSTVRSIVT 338 Query: 268 QFSIWFKAKATKAGVNKS-AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-- 324 A K+GV K+ AH R AT AGA+ E+ G + Y K Sbjct: 339 VIGESVGAVFKKSGVKKAHAHRFRHTLATELLAAGASFEEVADVLGDSVDVVKKHYAKWS 398 Query: 325 GADRIRLGIKNSR 337 A + R+ SR Sbjct: 399 EARQARVTDLLSR 411 >gi|120403198|ref|YP_953027.1| site-specific tyrosine recombinase XerC [Mycobacterium vanbaalenii PYR-1] gi|119956016|gb|ABM13021.1| tyrosine recombinase XerC subunit [Mycobacterium vanbaalenii PYR-1] Length = 319 Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 42/268 (15%), Positives = 92/268 (34%), Gaps = 28/268 (10%) Query: 85 GSLAVNSRISF----ESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT---PSSAIQFL 137 + ++R ++ + FD + + R +T +RS + ++ S+ + Sbjct: 35 RGRSEHTRRAYLGDVRALFDFLAERRPGTGLRGLTLPVLRSWLAAQATAGAARSTLARRT 94 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS------- 190 ++++ WAVR+ + +P ++ PK + ++ ++ G+ Sbjct: 95 SAVKTFTAWAVRRGLMTEDPAARLQVPKARRTLPSVLRQDQAREAMDAAKSGAQQGDPLA 154 Query: 191 -QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAM- 247 + RL E L +G+R S+ C + + ++ K TV D L Sbjct: 155 LRDRLIVEMLYATGIRVSELCGLDIDDVDTARRLLRVLGKGNKQRTVPYGDPAHAALTAW 214 Query: 248 ---------TPIGKETFFINNDKQKMNATQFSIWFKA--KATKAGVNKSAHGVRKFSATI 296 T + +++ Q A + HG+R +AT Sbjct: 215 LSDGRPALVTAGSGAALLLGARGGRLDPRQARTVVHQTMAAVSGAPDIGPHGLRHSAATH 274 Query: 297 SADAGATAHELMATYGWKTVDQAETYTK 324 + GA + G ++ + YT Sbjct: 275 LLEGGADLRVVQELLGHSSLATTQLYTH 302 >gi|319902638|ref|YP_004162366.1| integrase family protein [Bacteroides helcogenes P 36-108] gi|319417669|gb|ADV44780.1| integrase family protein [Bacteroides helcogenes P 36-108] Length = 379 Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 50/279 (17%), Positives = 96/279 (34%), Gaps = 33/279 (11%) Query: 87 LAVNSRISFESYFDQIIRKSGDFDYRKITTKH--------IRSGVESRKHTPSSAIQFL- 137 + ++ + + II +D + I + ++ K A + L Sbjct: 100 QSGSTNRAKKDILQAIIHHLKRYDPQGILLEKIDKSYILGFIEYLKKAKQQHHKAEKGLH 159 Query: 138 --------TSMRVLFKWAVRQEYVAINPCLSVE---RPKRKTEGIRPWTKEDMQQFKSFW 186 +R AV +EY++ NP ++ +PK T ++++ Sbjct: 160 TNTQLYYFKMLRYCLNHAVSEEYISENPINKIKNEEKPKNHKREREYLTISELKRLVRTP 219 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-----NNIFSIKTQKTGTIITVELPDGF 241 + AF F + GLR D +++ N SI QKT I++ L Sbjct: 220 FYNKLLKQAFLFSCFCGLRHCDIAALKWKNIHYDDAHNASLSIVQQKTQEAISLPLSHEA 279 Query: 242 MKLL--AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS 297 +K L +T F ++ ++ +I A +A + K + H R AT+ Sbjct: 280 VKYLPERDMAQDDDTVFAGL----ISLSRSNIILDKWAKQADIQKHITFHVARHTHATML 335 Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336 GA + + G + + Y K D ++ Sbjct: 336 LTLGADLYTVSKLLGHTNIQTTQIYAKIVDESKVKAIAL 374 >gi|299533133|ref|ZP_07046518.1| phage integrase [Comamonas testosteroni S44] gi|298718910|gb|EFI59882.1| phage integrase [Comamonas testosteroni S44] Length = 348 Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 41/292 (14%), Positives = 88/292 (30%), Gaps = 41/292 (14%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQI--IRKSGDFDYRKITTKHIRSGVESR---K 127 ++ Y + LA + + ++ ++ + + HIR Sbjct: 19 VVHSYLEHVRVQKRLAERTHTLYALDLIKLQSFAQAAAQELLTLQPSHIRRFAAQMHGAG 78 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + L+ R F+WA ++E V NP V PK + +D Q SF + Sbjct: 79 RSARGIALILSGWRSFFRWAAQRELVPFNPVEGVRGPKAAKPLPKALAVDDAVQLASFQN 138 Query: 188 E------GSQPRLAFEFLLYSGLRCSDSCRAGV------QHLQNNIFSIK------TQKT 229 ++ E L GLR ++ + +H ++ K Sbjct: 139 PEADPWMEARDVAMTELLYSCGLRVAELVGLDLRPDQQSRHEGRGWIDLEAGDAHVQGKG 198 Query: 230 GTIITVELPD---------------GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFK 274 V + + + + F+ ++++A K Sbjct: 199 SKRRIVPVGRMAILALQRWLALRSCALVGAAQLKAQDEAALFVGRRGERLSAQSVWSRLK 258 Query: 275 AKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 + +AG+ H +R A+ + + G ++ + YT+ Sbjct: 259 QRGQQAGLATGVHPHVLRHSFASHMLQSSGDLRAVQELLGHSSIATTQIYTR 310 >gi|262376584|ref|ZP_06069812.1| tyrosine recombinase XerC [Acinetobacter lwoffii SH145] gi|262308294|gb|EEY89429.1| tyrosine recombinase XerC [Acinetobacter lwoffii SH145] Length = 305 Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 46/292 (15%), Positives = 99/292 (33%), Gaps = 38/292 (13%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGVESR----K 127 L++ + K + + ++ ++ + + + + +R + + + Sbjct: 6 LLNMWLKEREIQNQSKHTLQAYARDVSDFLEFCQREQLNLNDVEATDLRQFLAEKVEQHQ 65 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI-------------RPW 174 +PSS + L+S+R KWA + +++A NP + ++ +P Sbjct: 66 LSPSSLQRMLSSIRQFMKWAEQAQHLAFNPADDFQLKRQSRPLPGMVDIETVNQIIDQPA 125 Query: 175 TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTII 233 + ++QQ W + + E L SGLR ++ ++ + N ++ T K Sbjct: 126 PENEIQQ--QMW---LRDKAILELLYSSGLRLAELQNLRIKDIDFNRQLLRITGKGNKTR 180 Query: 234 TVELPDGFMKLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV- 282 V + + + FI + A Q K +A +AGV Sbjct: 181 IVPFGSKAKASVMAWLQVYPLWNGDFVPEANVFITQKGNPLGARQIENRVKFQAQRAGVN 240 Query: 283 -NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 + H +R A+ + G + + YT D L Sbjct: 241 VDLHPHLLRHCFASHMLSNSRDLRAVQEMLGHSNLSTTQIYTH-VDFDHLAQ 291 >gi|239833075|ref|ZP_04681404.1| tyrosine recombinase XerD [Ochrobactrum intermedium LMG 3301] gi|239825342|gb|EEQ96910.1| tyrosine recombinase XerD [Ochrobactrum intermedium LMG 3301] Length = 313 Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 46/276 (16%), Positives = 95/276 (34%), Gaps = 36/276 (13%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRKH---TPSSAIQFLTS 139 A N+ S+ + + + + H+RS +++ +S + L++ Sbjct: 20 RGAARNTLESYRRDLEAVAEAMAARGVNLAEAGADHVRSAIDAMAAEGFAATSQARRLSA 79 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-----SEGSQPRL 194 +R F++ + Y +P +V+ PK++ + + E++ + G L Sbjct: 80 LRQFFRFLYSEGYRQDDPTGTVDAPKKQKPLPKIMSVENVTRLLDRAVLEADEPGGPADL 139 Query: 195 ------------AFEFLLYSGLRCSDSCRAGVQ-HLQNNIFSIKTQKTGTIITVELPDGF 241 E L +GLR S+ V ++ F + K V L Sbjct: 140 TSDRLRALRLHALLETLYATGLRVSELVGLPVTVARTDHRFLLVRGKGSKERMVPLSPKA 199 Query: 242 MKLLAM-------TPIGKETFFIN---NDKQKMNATQFSIWFKAKATKAGVNKSA---HG 288 + L P + ++ ++ + F+ K A +AG++ SA H Sbjct: 200 REALQRFLALRDSLPGSDDNPWLFPAFSESGHLARQVFARELKGLAARAGLSASAVSPHV 259 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 +R A+ GA + G + + YT Sbjct: 260 LRHAFASHLLQNGADLRTVQQLLGHADISTTQIYTH 295 >gi|149908511|ref|ZP_01897173.1| tyrosine recombinase [Moritella sp. PE36] gi|149808345|gb|EDM68282.1| tyrosine recombinase [Moritella sp. PE36] Length = 333 Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 29/272 (10%), Positives = 86/272 (31%), Gaps = 27/272 (9%) Query: 77 EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITT------KHIRSGVESRKHTP 130 Y S L++++ ++ + + + + + + +P Sbjct: 40 RYITSER--QLSLHTVRNYRRHLILFAEQMLTLPITEWRALDASQVRKLATLNHKLGLSP 97 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG- 189 S L+++R + V Q + NP V P++ + +++ Q S + Sbjct: 98 RSLATKLSALRSFCDYLVLQGDLTANPAKGVSAPRQHKPLPKNLDVDEINQLLSVSNAVE 157 Query: 190 -------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGF 241 + + E + +GLR + + ++ +++ K + + Sbjct: 158 SDDPFLVLRDKAMMELMYSAGLRLDELVNLDLTDVKLREKTMRVIGKGNKQRQLPIGSIA 217 Query: 242 MKLLAM--------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRK 291 + L + F++ +++++ + + + + H +R Sbjct: 218 ITALQAWLAVRGEYADNAQPALFVSQLRRRISHRSVQSRMAKWGQQQTLTSHVNPHKLRH 277 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYT 323 AT ++ + G + + YT Sbjct: 278 SFATHMLESSGDLRAVQELLGHANISTTQIYT 309 >gi|187930268|ref|YP_001900755.1| integrase family protein [Ralstonia pickettii 12J] gi|187727158|gb|ACD28323.1| integrase family protein [Ralstonia pickettii 12J] Length = 351 Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 46/284 (16%), Positives = 101/284 (35%), Gaps = 21/284 (7%) Query: 60 YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119 Y++ + T+ + Y + ++ S + G + ++ + Sbjct: 50 YLSRAPSEKLTVAGALKRYMEEVSVTK-KPTTQRSERFTAQHLEAFFGKYSMAAVSADLV 108 Query: 120 RSGVESRKHTPSSAIQF---LTSMRVLFKWAVRQEY---VAINPCLSVERPKRKTEGIRP 173 ++R S L + LF+ A+ QE+ + NP ++ +P R Sbjct: 109 AKYRDARLAAGKSNNTVRIELAMLGHLFRTAI-QEWSIGLTFNPVANIRKPSPGAGRDRR 167 Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLY--SGLRCSDSCRAGVQHLQNNI--FSIKTQKT 229 + ++ + + S S P L + L +G+R S+ + N +++ K Sbjct: 168 LSLDEQARLFAAVSAHSNPMLGWIVSLAVETGMRSSEIATLRRSQVDLNRRVVTLRDTKN 227 Query: 230 GTIITVELPDGFMKLLAMT------PIGKETFFINNDKQ--KMNATQFSIWFKAKATKAG 281 G+ V L +L + P+ + F + K F + + G Sbjct: 228 GSARVVPLTRAAADVLQLALGNPIRPLDSDLVFFGEPGRDGKRRPYVFQKLWASIVRDMG 287 Query: 282 V-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 + + H +R + + +AG + E+ A G K++ + YT Sbjct: 288 LADLHFHDLRHEAVSRLVEAGLSDQEVAAISGHKSMQMLKRYTH 331 >gi|309702146|emb|CBJ01461.1| phage integrase [Escherichia coli ETEC H10407] Length = 376 Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 41/264 (15%), Positives = 84/264 (31%), Gaps = 24/264 (9%) Query: 73 WL--ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE--SRKH 128 WL + Y+KS + + G R IT + K Sbjct: 102 WLPDLQLYKKSP---------QSELSKLNLYVRPFWGKRQLRDITAGELEQYAAGLREKL 152 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF-KSFWS 187 PS+ + L + + AVR ++ +P V K R + ++ +F + + Sbjct: 153 RPSTVNRILAILSKICSLAVRAGWITHSPMSHVRYLKENNIRYRTLSATEIPRFIDAATA 212 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQKTGTIITVELPDGFMKLL 245 + + LY+G+R + C + H + + K+G T L + ++ Sbjct: 213 LQTPAADSILLALYTGMRIGEVCTLKWEYWHPDMHQLILPDTKSGHPFTCPLAPPAIAVV 272 Query: 246 AMTPI---GKETFF--INNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISAD 299 K F + ++ + + + + F A ++ H +R+ AT Sbjct: 273 QCQQDLMLSKTYIFPRLTDNARPLAYPRAT--FARICRDADIDNLRMHDLRRTFATRVLQ 330 Query: 300 AGATAHELMATYGWKTVDQAETYT 323 A ++ Y Sbjct: 331 ATGDIAIASHLLNHHSLTATRRYA 354 >gi|262278120|ref|ZP_06055905.1| site-specific recombinase XerC [Acinetobacter calcoaceticus RUH2202] gi|262258471|gb|EEY77204.1| site-specific recombinase XerC [Acinetobacter calcoaceticus RUH2202] Length = 310 Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 49/279 (17%), Positives = 97/279 (34%), Gaps = 27/279 (9%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGVESR---- 126 L+S + K + + ++ ++E + D R + +R + R Sbjct: 10 QLLSMWLKERKIQNQSEHTITAYERDVKSFLEFCDLKQIDLRNVEASDLREYLAQRVEQD 69 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + + SS + LTS+R KWA + +Y+ INP + ++ E + Q Sbjct: 70 QLSSSSMQRHLTSIRQFMKWAEQGKYLEINPTDDFKLKRQPRPLPGMIDIETVNQILDQP 129 Query: 187 SEG--------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV--- 235 + + E L SGLR ++ ++ + N ++ G + Sbjct: 130 MPEKPVDQQLWLRDKAMLELLYSSGLRLAELQGLTIKDIDFNRQLVRITGKGNKTRIVPF 189 Query: 236 --ELPDGFMKLLAMTPIGKETF------FINNDKQKMNATQFSIWFKAKATKAGV--NKS 285 + + + L + I K F FI+ + Q K +A +AGV + Sbjct: 190 GKKAKESLLNWLKIYKIWKGHFDQNAFVFISQRGGVLTPRQIEKRVKLQAQRAGVNVDLH 249 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R A+ + + G + + YT Sbjct: 250 PHLLRHCFASHMLSSSGDLRSVQEMLGHSNLSTTQIYTH 288 >gi|77163593|ref|YP_342118.1| Phage integrase [Nitrosococcus oceani ATCC 19707] gi|254435225|ref|ZP_05048732.1| site-specific recombinase, phage integrase family [Nitrosococcus oceani AFC27] gi|76881907|gb|ABA56588.1| Phage integrase [Nitrosococcus oceani ATCC 19707] gi|207088336|gb|EDZ65608.1| site-specific recombinase, phage integrase family [Nitrosococcus oceani AFC27] Length = 251 Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 39/208 (18%), Positives = 78/208 (37%), Gaps = 11/208 (5%) Query: 127 KHTPSSAIQFLTSMRVLFKWAV-RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + +P S ++L ++ F AV ++ +P + + K +R + + ++ Sbjct: 25 QRSPGSVNRYLAALSHTFTIAVKEWGWLEDSPMGRISKLKEPRGRVRFLSDSERERLLKA 84 Query: 186 WSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVEL---- 237 S L A L +G R + +++ + S+ K G + L Sbjct: 85 CRGSSNSFLYPAVVLALSTGARRMEIMALRWRNVDLQRGLISLHETKNGERRALPLAGHA 144 Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATI 296 D +L + I + F +N + W + +AG+ + H +R +A+ Sbjct: 145 LDCVKRLSKVRQIDTDLLFPSNHNPQQPLDLRKPW-EIALKQAGIEDFRWHDLRHSAASY 203 Query: 297 SADAGATAHELMATYGWKTVDQAETYTK 324 A GAT E+ G KT+ + Y Sbjct: 204 LAMNGATLAEIAEVLGHKTLQMVKRYAH 231 >gi|291542679|emb|CBL15789.1| Site-specific recombinase XerD [Ruminococcus bromii L2-63] Length = 327 Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 51/271 (18%), Positives = 96/271 (35%), Gaps = 24/271 (8%) Query: 99 FDQIIRKSGDFDYRKITTKHIRSGVE-------SRKHTPSSAIQFLTSMRVLFKWAVRQE 151 FD+I K D D I T ++ + R + +S + +S++ FK+ + Sbjct: 58 FDEI--KIDDVDLDLIKTVNLELAYDYMNFLYRDRNNKSASRARKCSSLKGFFKYITNNK 115 Query: 152 -YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR--LAFEFLLYSGLRCSD 208 + NP +E PK K + T E + + ++ R L GLR S+ Sbjct: 116 HLLDTNPVEQLESPKNKKALPKYLTLEQSIELLNAVDGNNKQRDYCILTLFLNCGLRVSE 175 Query: 209 SCRAGVQHLQNNIFSIKTQKTGTIITVELP----DGFMKLLAMTPIG----KETFFINND 260 + ++ K V L D + + + + PI K+ FI+ + Sbjct: 176 MAGLNYNDIHSDGTMRVVGKGNKERIVYLNSACIDAYNEYMKVRPIDEVKDKKALFISRN 235 Query: 261 KQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGA-TAHELMATYGWKTV 316 ++M+ K G++ S H +R +AT+ G L G + + Sbjct: 236 HRRMSVKTIQAMVYKYLEKIGLDSQGYSCHKLRHTAATLMYQQGGVDVRVLKEVLGHENL 295 Query: 317 DQAETYTKGADRIRLGIKNSRRISSVVDSDD 347 E YT + +S ++ + Sbjct: 296 GTTEIYTHLSSEQMKNAADSNPLAKIKPKKK 326 >gi|284007181|emb|CBA72467.1| phage integrase [Arsenophonus nasoniae] Length = 269 Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 50/260 (19%), Positives = 98/260 (37%), Gaps = 14/260 (5%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKHTPSS 132 + Y + L + ++ I ++ D +TTK+I + K ++ Sbjct: 1 MDRYEEILRARGLKEKTMKDYKHRISVIRKEMIDVPIESVTTKNIADLLHPFINKGKITT 60 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192 A + FK A+ + INP + PK K + R + D + ++ + Sbjct: 61 AKLMRVFLNDYFKEAISLGILKINPVTPTKIPKIKIQRAR-LSFNDFTAILNLINDENHW 119 Query: 193 RL-AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL----LAM 247 + + L +G R SD + +++ +N I QKT + I + L + + L Sbjct: 120 LTKSMKIALVTGQRISDISKLKWKNIYDNKLWIIQQKTESKIAIPLNIEIVNIKLSKLLE 179 Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-----SAHGVRKFSATISADAGA 302 + + I N +K++ + S F K+ + S H +R SA + + Sbjct: 180 IKNERSEYIITNGDKKLSTDKISKTFAKFRDKSELKWEVNPPSFHEIRSLSARLYTETMG 239 Query: 303 TAHELMATYGWKTVDQAETY 322 T G K+++ E Y Sbjct: 240 TDFA-KKLLGHKSIEMTEKY 258 >gi|160877191|ref|YP_001556507.1| tyrosine recombinase XerC [Shewanella baltica OS195] gi|160862713|gb|ABX51247.1| tyrosine recombinase XerC [Shewanella baltica OS195] gi|315269395|gb|ADT96248.1| tyrosine recombinase XerC [Shewanella baltica OS678] Length = 306 Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 33/271 (12%), Positives = 89/271 (32%), Gaps = 21/271 (7%) Query: 72 KWL--ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD-FDYRKITTKHIR---SGVES 125 +WL Y + L+ ++ ++ ++ D ++ +H + + + Sbjct: 14 QWLQTFERYLSTER--QLSAHTVRNYLYELNRGSDLLPDGVHLLNVSREHWQQVLAKLHR 71 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + +P S L++++ ++ +R+ + +NP + PK+ + + + Sbjct: 72 KGLSPRSLSLCLSAVKQWGEFLLRESVIELNPAKGLSAPKQAKPLPKNIDVDAISHLLDI 131 Query: 186 ---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT--------IIT 234 + + E SGLR ++ + +Q ++ ++ G + Sbjct: 132 EGTDPLSLRDKAMMELFYSSGLRLAELAALNLSSVQYDLKEVRVLGKGNKERIVPVGRLA 191 Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAK--ATKAGVNKSAHGVRKF 292 + ++ P F+ ++++ V H +R Sbjct: 192 IAALLNWLNCRKQIPCEDNALFVTEKGKRLSHRSIQARMAKWGQEQALSVRVHPHKLRHS 251 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYT 323 AT +A A + G + + YT Sbjct: 252 FATHMLEASADLRAVQELLGHANLATTQIYT 282 >gi|187922354|ref|YP_001893996.1| site-specific tyrosine recombinase XerC [Burkholderia phytofirmans PsJN] gi|187713548|gb|ACD14772.1| tyrosine recombinase XerC [Burkholderia phytofirmans PsJN] Length = 307 Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 44/279 (15%), Positives = 90/279 (32%), Gaps = 30/279 (10%) Query: 75 ISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTP 130 I+ Y + H L+ ++ + +++ + + +T IR V T Sbjct: 7 IAAYLSNLEHERRLSAHTLRGYAHELEELKQLAKGRPLESLTPVDIRGAVSRAHAGGLTA 66 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQFKSFW 186 S L++ R ++W + +A NP +V PK+ + + +D M+ + Sbjct: 67 RSISHRLSAWRAFYRWLAGRVDLAANPVATVRAPKQAKPLPKALSVDDATRLMESPPAAS 126 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRA-------------GVQHLQNNIFSIKTQKTGTII 233 EG + E SGLR ++ G L + + + + Sbjct: 127 PEGLRDHAMLELFYSSGLRLAELVGLDARFADADGYRSAGWLKLDSAEVEVLGKGNRRRV 186 Query: 234 TVELPDGFMKLLAMTPIGKET-------FFINNDKQKMNATQFSIWFKAKATKAGVNK-- 284 L A + + F++ +++ K A AG+ Sbjct: 187 VPVGSKALEALGAWLAVRDQMVKHDPHPLFLSARGNRLSPNVVRERVKRAALVAGIPANV 246 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 H +R AT + + G ++ + YT Sbjct: 247 HPHVLRHSFATHVLQSSGDLRAVQELLGHASITATQVYT 285 >gi|108798958|ref|YP_639155.1| site-specific tyrosine recombinase XerC [Mycobacterium sp. MCS] gi|119868073|ref|YP_938025.1| site-specific tyrosine recombinase XerC [Mycobacterium sp. KMS] gi|123070325|sp|Q1BAI5|XERC_MYCSS RecName: Full=Tyrosine recombinase xerC gi|166918890|sp|A1UEH7|XERC_MYCSK RecName: Full=Tyrosine recombinase xerC gi|108769377|gb|ABG08099.1| tyrosine recombinase XerC subunit [Mycobacterium sp. MCS] gi|119694162|gb|ABL91235.1| tyrosine recombinase XerC subunit [Mycobacterium sp. KMS] Length = 300 Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 38/268 (14%), Positives = 91/268 (33%), Gaps = 28/268 (10%) Query: 85 GSLAVNSRISFESYFDQII----RKSGDFDYRKITTKHIRSGVESRKHT---PSSAIQFL 137 + ++R ++ + ++ D +T +R+ + ++ ++ + Sbjct: 16 RGRSDHTRRAYLGDLRSLFAFCNERTPGADLGSLTLPVLRAWLSAQAAAGTARTTLARRT 75 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW--------SEG 189 ++++ WAVR+ +A +P ++ PK + ++ + Sbjct: 76 SAVKTFTAWAVRRGLMASDPATRLQMPKARRTLPAVLRQDQARDALDAANSGAQQGDPLA 135 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAM- 247 + RL E L +G+R S+ C + + + ++ K TV + + L Sbjct: 136 LRDRLIVEMLYATGIRVSELCGLDIDDVDTSRRLLRVLGKGDKQRTVPFGEPAEQALRAW 195 Query: 248 ---------TPIGKETFFINNDKQKMNATQFSIWFKAK--ATKAGVNKSAHGVRKFSATI 296 T + ++++ Q A + HG+R +AT Sbjct: 196 LTSGRPALATAESGPALLLGARGRRLDPRQARTVVHETVGAVAGAPDIGPHGLRHSAATH 255 Query: 297 SADAGATAHELMATYGWKTVDQAETYTK 324 + GA + G T+ + YT Sbjct: 256 LLEGGADLRIVQELLGHSTLATTQLYTH 283 >gi|88861277|ref|ZP_01135909.1| site-specific recombinase [Pseudoalteromonas tunicata D2] gi|88816758|gb|EAR26581.1| site-specific recombinase [Pseudoalteromonas tunicata D2] Length = 305 Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 36/275 (13%), Positives = 94/275 (34%), Gaps = 22/275 (8%) Query: 72 KWL--ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFD-----YRKITTKHIRSGV 123 WL + + + + + ++++ + + ++ + + + + Sbjct: 10 SWLNPVEVFLQYLKYEKNYSIHTLLQYRLQLVEVANFLQNKAESWLKVQPEQLRAYSMSL 69 Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 ++R + + L+ +R +K+ ++ NP +++ PK + + + M Q Sbjct: 70 KARALSARTINLKLSCVRSFYKYLQIRKTELNNPAEAIKGPKFQKPLPKNLDVDQMHQLL 129 Query: 184 SFWSE---GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV----- 235 + E G + + E + SGLR S+ A + + I+ G + Sbjct: 130 AMNPEDSFGFRDKAMMELMYSSGLRVSELVNANLIDVNLREKEIRVLGKGNKERILPIGG 189 Query: 236 ----ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGV 289 L D + F++ K +++ Q K G++ H + Sbjct: 190 KAIEALQDWLKCRAEFALPDEVAVFVSKKKCRISTRQVRARMKLWGINQGISSQIHPHKL 249 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 R A+ ++ + G ++ + YT Sbjct: 250 RHSFASHMLESSGDLRAVQELLGHSSLSATQVYTH 284 >gi|322435169|ref|YP_004217381.1| integrase family protein [Acidobacterium sp. MP5ACTX9] gi|321162896|gb|ADW68601.1| integrase family protein [Acidobacterium sp. MP5ACTX9] Length = 310 Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 58/285 (20%), Positives = 96/285 (33%), Gaps = 27/285 (9%) Query: 67 KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126 L L +E S H F +Y + + G + + S + +R Sbjct: 8 ADGFLAMLRNERGASEHTVRAYTREVKDFAAYLAGEMGERGIGAVEHLHIRGYLSVLYAR 67 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF---K 183 SS + L S+R FKW ++ V NP L V PKR R + E++ + Sbjct: 68 GLEKSSMARALASVRSWFKWLAKEGKVEQNPALLVSTPKRAQHLPRVPSAEEVNRVMDSL 127 Query: 184 SFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPD 239 G+ + R+ FE L G+R S+ C + ++Q N + K V L D Sbjct: 128 ESADGGTWPERDRVIFELLYGCGIRNSELCGLDMGNVQWANDAVLVRGKGKKERLVPLGD 187 Query: 240 GFMKLLAM---------------TPIGKETFFINNDKQ---KMNATQFSIWFKAKATKAG 281 + IG +N + ++ KA A G Sbjct: 188 EAAAAVRAYMPQRAERLAAAGKGGLIGDGALLMNARMRGTCRLTTRSVGRIVKAIAQSRG 247 Query: 282 VNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 + H +R T + GA + G + + + YT+ Sbjct: 248 LAADVHPHTLRHAFGTHMLEDGADLRAIQEMLGHERLSTTQRYTQ 292 >gi|1877429|gb|AAC48867.1| integrase [Streptococcus pyogenes phage T12] Length = 362 Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 50/304 (16%), Positives = 95/304 (31%), Gaps = 31/304 (10%) Query: 48 MSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG 107 +A + ++ P+ T L ++ K + + I+ K Sbjct: 40 QAARETLISLQAELDKPKSS-MTFGALTDQWLKEYEKTVQGSTYLKTERNINKHILPKLD 98 Query: 108 DFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167 I I+ E + + L +R + AVR Y+ NP L + PK K Sbjct: 99 KVKIGDINPLLIQRLTEEWCNDLKYGGKILGLVRNILNLAVRYGYINNNPALPITPPKIK 158 Query: 168 TEG---IRPWTKEDMQQFKSFWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222 + +T + ++QF + F L ++G+R + L N Sbjct: 159 RKRKMNNNFYTLDQLKQFLELVEKTDNIEKIALFRLLAFTGIRKGELLALTWDDLNGNTL 218 Query: 223 SIKTQKTGTIITVEL------------------PDGFMKLLAMTPIGKETFFINNDKQKM 264 SI T T + +E+ + +L P F + M Sbjct: 219 SINKAVTRTQVGLEIDVTKTKSSDRLISLDDETLEILQELHETFPTSTLMF-QSKSGGIM 277 Query: 265 NATQFSIWFKAKATKAGVNK---SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE- 320 + W G++ + HG R A++ ++G + ++ G + Sbjct: 278 TPSLPRKWLLQIIK--GIDLPQITIHGFRHTHASLLFESGLSLKQVQHRLGHGDLQTTMN 335 Query: 321 TYTK 324 YT Sbjct: 336 VYTH 339 >gi|763052|gb|AAA85500.1| integrase [Streptococcus phage T270] Length = 362 Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 50/304 (16%), Positives = 95/304 (31%), Gaps = 31/304 (10%) Query: 48 MSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG 107 +A + ++ P+ T L ++ K + + I+ K Sbjct: 40 QAARETLISLQAELDKPKSS-MTFGALTDQWLKEYEKTVQGSTYLKTERNINKHILPKLD 98 Query: 108 DFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167 I I+ E + + L +R + AVR Y+ NP L + PK K Sbjct: 99 KVKIGDINPLLIQRLTEEWCNDLKYGGKILGLVRNILNLAVRYGYINNNPALPITPPKIK 158 Query: 168 TEG---IRPWTKEDMQQFKSFWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222 + +T + ++QF + F L ++G+R + L N Sbjct: 159 RKRKMNNNFYTLDQLKQFLELVEKTDNIEKIALFRLLAFTGIRKGELLALTWDDLNGNTL 218 Query: 223 SIKTQKTGTIITVEL------------------PDGFMKLLAMTPIGKETFFINNDKQKM 264 SI T T + +E+ + +L P F + M Sbjct: 219 SINKAVTRTQVGLEIDVTKTKSSDRLISLDDETLEILQELHETFPTSTLMF-QSKSGGIM 277 Query: 265 NATQFSIWFKAKATKAGVNK---SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE- 320 + W G++ + HG R A++ ++G + ++ G + Sbjct: 278 TPSLPRKWLLQIIK--GIDLPQITIHGFRHTHASLLFESGLSLKQVQHRLGHGDLQTTMN 335 Query: 321 TYTK 324 YT Sbjct: 336 VYTH 339 >gi|269965093|ref|ZP_06179258.1| tyrosine recombinase XerC [Vibrio alginolyticus 40B] gi|269830396|gb|EEZ84621.1| tyrosine recombinase XerC [Vibrio alginolyticus 40B] Length = 229 Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 31/204 (15%), Positives = 69/204 (33%), Gaps = 14/204 (6%) Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---WSEGSQ 191 L+S+R F + + + ++ NP V P++K + +++ Q + Sbjct: 3 TRLSSLRSFFDFLILRGEMSANPAKGVSAPRKKRPLPKNLDVDEVSQLLEVNEDDPLAVR 62 Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE--------LPDGFM 242 R E + +GLR ++ V+ +Q ++ K V + Sbjct: 63 DRAMMELMYGAGLRLAELVGVDVRDVQLRSGELRVIGKGDKERKVPFSGMATEWVGKWLR 122 Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADA 300 + G+ F++ +++ K V + S H +R AT ++ Sbjct: 123 VRGDLAAPGEPALFVSKLGTRISHRSVQKRMAEWGQKQSVASHISPHKLRHSFATHMLES 182 Query: 301 GATAHELMATYGWKTVDQAETYTK 324 + G + + + YT Sbjct: 183 SNNLRAVQELLGHENISTTQIYTH 206 >gi|260892725|ref|YP_003238822.1| integrase family protein [Ammonifex degensii KC4] gi|260864866|gb|ACX51972.1| integrase family protein [Ammonifex degensii KC4] Length = 378 Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 43/327 (13%), Positives = 107/327 (32%), Gaps = 39/327 (11%) Query: 48 MSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG 107 ++ L + E +PR T+ L+ + + + + ++ E+ G Sbjct: 46 LAELLAKAGRGELGTAPRSL--TVAALLDMWLEVSR-RRWKPGTAVAAETAVKTWKELLG 102 Query: 108 DFDYRKITTKHIRSGVESRKH--TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK 165 K+ + + + +P++ +R +WAV+++ + +P V P+ Sbjct: 103 HVPAGKLGPADVEKALARMEGELSPATCRYRFGLLRQAMRWAVKRKLLGQDPTEGVAPPR 162 Query: 166 RKTEGIRPWTKEDMQQFKSFWSEGSQ---PRLAFEFLLYSGLRCSDSCRAGVQHLQ--NN 220 + +R W++E++ +F + F L +G+R + + + Sbjct: 163 APRKEVRVWSEEEIARFLGVLDSSGHRPAVKAFFRLALSTGMRKGELLALRWEDVDFEKG 222 Query: 221 IFSIKTQK----------------TGTIITVELPDGFMKLLAMTPIGKE----------T 254 ++ + + + +L K Sbjct: 223 CLYVRRTRCHHTGGVHEPKSPSSCRKVALDAGSLECLRRLKREQAREKLRAGAEWCEQGL 282 Query: 255 FFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGW 313 F + ++ + + F++ +AGV + H +R A++ G + G Sbjct: 283 VFATRKGKALSVFRLACTFRSLCRRAGVPEIRIHDLRHTHASLLLRQGVHPKVVQERLGH 342 Query: 314 KTVDQA-ETYTKGA-DRIRLGIKNSRR 338 +V +TY+ D +K R Sbjct: 343 SSVKITLDTYSHLLPDAQEQAVKALER 369 >gi|134298247|ref|YP_001111743.1| phage integrase family protein [Desulfotomaculum reducens MI-1] gi|134050947|gb|ABO48918.1| phage integrase family protein [Desulfotomaculum reducens MI-1] Length = 304 Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 45/280 (16%), Positives = 90/280 (32%), Gaps = 29/280 (10%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGVES------ 125 L+ + +L+ + ++ +++I K + +TT R V S Sbjct: 6 LVKTFLMYQETKNLSKRTIEWYQFTLNKLIDYCKENNISIESMTTPQARQYVFSLQKSIS 65 Query: 126 ---RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ-- 180 +K+ + ++ S++++F + EY+ NP V++ K I + E+++ Sbjct: 66 RTGKKYADNGINGYIRSVKIMFNYLFEDEYIEKNPFAKVKQIKTDKVIIETFEVEEVKRM 125 Query: 181 --QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVEL 237 QF + L + L +G+R S++ + + + K K V Sbjct: 126 LNQFNKKVYTEFRDALLIQILYDTGIRISEAINLKISDIDTDKNMFKVFGKGHKERMVPF 185 Query: 238 PDGF-MKLLAMTPI---------GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--- 284 ++L P + F + + TKA + Sbjct: 186 GRSIKREILKYLPKRNKEVDKELDEGYLFSTRNGTALTIRNVHRKIVEVGTKAKIKGKRL 245 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 SAH R A G L G + Y Sbjct: 246 SAHTFRHTFAKTYLVNGGNLFSLQTIMGHNDLSTTRKYVH 285 >gi|38257059|ref|NP_940713.1| Orf28 [Pseudomonas syringae pv. syringae] gi|37723836|gb|AAR02162.1| Orf28 [Pseudomonas syringae pv. syringae] Length = 319 Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 50/276 (18%), Positives = 101/276 (36%), Gaps = 31/276 (11%) Query: 84 WGSLA-VNSRISFESYFDQIIRKSGDF---DYRKITTKHI---RSGVESRKHTPSSAIQF 136 + +L +R ++++ G D+R++T H+ R+ +E R ++ + Sbjct: 33 FANLDNPRTRRAYQNDLTDFSSFIGLASADDFRQVTRSHVLAWRADLEQRGLAGATIRRK 92 Query: 137 LTSMRVLFKWAVRQE-YVAINPCLSVERPKRKT-EGIRPWTKED-----MQQFKSFWSEG 189 L ++ LF + NP V+RP+ ++ EG P + + + +G Sbjct: 93 LAALASLFDHLLENNAVAGGNPVHGVKRPRIESNEGKTPALGDHQAKQLLDAPDTETLKG 152 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTII-TVELPDGFMKLL- 245 + R LLY GLR ++ + L + I ++ G+ I + L + + Sbjct: 153 LRDRAILAVLLYHGLRREEAAQLKTGDLQERRGIKHLRVHGKGSKIRFLPLHPVAAERIY 212 Query: 246 ---------AMTPIGKETFFI-NNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKF 292 P ++A +A A KAG+ + HG+R Sbjct: 213 AYLEQDVERDAAPGPLFRSLRGTTTGAGISANGIYTVVEACAKKAGIVVEHLGVHGLRAT 272 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 +AT + + A ++ G + Y + R Sbjct: 273 AATNALEHDADIAKVQMWLGHANISTTRLYDRRGQR 308 >gi|60681230|ref|YP_211374.1| putative tyrosine recombinase [Bacteroides fragilis NCTC 9343] gi|60492664|emb|CAH07437.1| putative tyrosine recombinase [Bacteroides fragilis NCTC 9343] Length = 294 Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 50/283 (17%), Positives = 98/283 (34%), Gaps = 23/283 (8%) Query: 56 PKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT 115 PK+ SP P Y ++ + ++ ++ +YF + + + R I Sbjct: 2 PKKNGKTSPAIPPG--------YAETLRQLRYSEHTVRAYTAYFREFQQYFAGRNLRYIR 53 Query: 116 TKHIRSGV----ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171 + I + + ++R + + S++ F+ + QE C V+R KR+ Sbjct: 54 PEEINAYIVHLIDTRGISSCQQNLRINSIKFYFEKVLGQERK----CYEVKRAKRERTLP 109 Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKT 229 +KE+++ + F L +GLR S+ + ++ ++ K Sbjct: 110 DVLSKEEIKSILDATGPDIRLFCMFSLLYSAGLRISELLDLKPHDINVSRSLIRVRQGKG 169 Query: 230 GTIITVELPDGFMKLLAMTPI---GKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS- 285 L ++ L +E F + + S K A +AG+ K Sbjct: 170 RKDRYTLLSKPLVRKLTEYTKLYKPQEWLFERYKGEPFTESIVSKKLKEAAKEAGITKRV 229 Query: 286 -AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 H +R AT + G + G + E Y AD Sbjct: 230 YPHLLRHSFATHLIEQGTDLKIVKELLGHNQLKTTEMYVHIAD 272 >gi|255325242|ref|ZP_05366348.1| tyrosine recombinase XerC [Corynebacterium tuberculostearicum SK141] gi|255297807|gb|EET77118.1| tyrosine recombinase XerC [Corynebacterium tuberculostearicum SK141] Length = 305 Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 38/264 (14%), Positives = 84/264 (31%), Gaps = 21/264 (7%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE---SRKHTPSSAIQFLTSMR 141 A + + S + R + + +R + + + S+ + + + Sbjct: 32 KGRAEATVRGYRSDLRDLARSVPT--FAEFDLNSLRQWLAEAVAEGKSRSTLARRTAAAK 89 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM-----QQFKSFWSEGSQPRLAF 196 WAVR+ ++ + + PK E + + Sbjct: 90 GFSTWAVREGHLKRDVAARLVTPKVGRHLPTVLAPEQAGELMGNAVSADEVHFLRDSAIL 149 Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-----ELPDGFMKLLA----- 246 E L SG+R ++ R + + ++ G V D + + Sbjct: 150 ELLYASGMRVAELVRLDLGDIDFQRGTLHVTGKGNKQRVVPFGHAAEDALKQWIDKGRGE 209 Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAH 305 + G E F+ + +++ Q + A G + HGVR +AT + GA Sbjct: 210 IAAAGTEAVFVGSRGGRIDQRQVRRIVEKAAKVTGTQGLTPHGVRHSAATHLLEGGADLR 269 Query: 306 ELMATYGWKTVDQAETYTKGADRI 329 + G +++ + YT + + Sbjct: 270 VVQELLGHSSLNTTQIYTHVSAQR 293 >gi|307691932|ref|ZP_07634169.1| Phage integrase [Ruminococcaceae bacterium D16] Length = 540 Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 43/291 (14%), Positives = 95/291 (32%), Gaps = 38/291 (13%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFES-YFDQIIRKSGDFDYRKITTKHIRSGVESRKH- 128 + + ++ L ++ ++ES + II + G ++T K ++ K Sbjct: 72 FGEWMDFWYQTYIKSGLRPATQNTYESTIYQHIIPQLGKIPLCQLTQKDLQQFYAHLKKE 131 Query: 129 -------------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175 + A R AV++ + NP + + P +++ ++ + Sbjct: 132 GRLVRTEQYGKGLSDRMARMCHAKCRAALDQAVQENLIRSNPAVGCKLPPKRSREMQVLS 191 Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK------T 229 ++++Q+F L F L +GLR + L + ++ K Sbjct: 192 RQELQRFLIQAKADGYFEL-FLLDLSTGLRRGELLALQWSDLDLDTGTLSVTKQVYEVNG 250 Query: 230 GTIITVE----------LPDGFMKLLAM-TPIGKETFFINNDKQ---KMNATQFSIWFKA 275 ++V LP +++ K + + K + Sbjct: 251 KMQLSVPKTKASIRKLVLPPAVVEVFREYRKTAKSRWLFPSPKNLDMPLTPGSMLRRLHI 310 Query: 276 KATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324 +AG + H +R AT++ + G L A G + + YT Sbjct: 311 ILERAGCKQIRFHDLRHTFATMALENGMDIKTLSAMLGHVSAATTLDIYTH 361 >gi|261495471|ref|ZP_05991918.1| putative integrase/recombinase [Mannheimia haemolytica serotype A2 str. OVINE] gi|261308805|gb|EEY10061.1| putative integrase/recombinase [Mannheimia haemolytica serotype A2 str. OVINE] Length = 351 Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 59/339 (17%), Positives = 109/339 (32%), Gaps = 32/339 (9%) Query: 3 PSLRLPPFVTKERTRHGKIIYY--FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY 60 P P VT++ GK + Y +R I L FI A + Sbjct: 13 PENLRPKTVTRKS---GKTVIYWLYRTHGKTEISLGTNRNEAFIKA---------AQLNI 60 Query: 61 INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120 + T + YR A ++ ++ D +IT +HIR Sbjct: 61 ERESQTARITFGLVAKRYRDEVIPQKKASTAQTDLCK-IKNLLLFFNDAPLEEITPQHIR 119 Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 + RK TP SA + ++++A Y + P ++ + + + ++ Sbjct: 120 EYMTWRKDTPGSANNEFSMFSHIWQYAREWGYTNL-PSPNIGMKRYPIRKREIYVENNI- 177 Query: 181 QFKSFWSEGSQP-RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD 239 F+ + Q R + +G R D +H+ + I QKT + +E+ Sbjct: 178 -FQMVYEVADQDMRDLMDLAYITGQRPVDLVNIRKEHIFDGYLHIVQQKTQAKLRIEIVG 236 Query: 240 GFMKLL--AMTPIGKETFFINNDKQKMNATQFSIWF---KAKATKAGVNK-------SAH 287 ++ + F +K+ A + F + +A K Sbjct: 237 KLADIIQDRLEKATGTHLFSTKKGEKLTARKLGKRFTYIREQAVKNNPEYANEIMAFQFR 296 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 +R S T A + G +V +TY + A Sbjct: 297 DLRAKSGTDKALSLGEEAARQ-QLGHTSVQMTKTYIRKA 334 >gi|257874138|ref|ZP_05653791.1| site-specific recombinase [Enterococcus casseliflavus EC10] gi|257808302|gb|EEV37124.1| site-specific recombinase [Enterococcus casseliflavus EC10] Length = 299 Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 44/281 (15%), Positives = 102/281 (36%), Gaps = 36/281 (12%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIR---SGVE 124 ++LI E + ++ +++ + +++SG+ D + + +R S + Sbjct: 11 FRYLIVE-------RGYSEKTKKAYQEDMNDFFHFLKESGNEDPLAVEYRDVRVYLSYLT 63 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 R ++ +S + + S+R +++ + E V NP + K+ + R + +++M Sbjct: 64 ERGYSRNSISRKMASLRSFYQFLTKHEIVKENPFAYIHLKKKNAKLPRFFYEKEMDALFQ 123 Query: 185 F----WSEGSQPRLAFEFLLYSGLRCSDS--CRAGVQHLQNNIFSIKTQKTGTI------ 232 + + E L SGLR S+ G ++ + I + Sbjct: 124 SVAGDEPLQQRNQALLEVLYGSGLRVSECSSLTLGAIDWESGVLLIHGKGNKDRYVPFGS 183 Query: 233 -----ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ----FSIWFKAKATKAGVN 283 + L G +L+ E F+N+ + AT + + + + ++ Sbjct: 184 YAQAAVKRYLSSGRKQLMEKQNKEHEVLFVNHLGDGITATGIEYVLNQIIRKSSLDSKIH 243 Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R AT + GA + G + + Y Sbjct: 244 --PHMLRHTFATHLLNNGADMRTVQELLGHANLSTTQIYAH 282 >gi|225874533|ref|YP_002755992.1| putative tyrosine recombinase XerC [Acidobacterium capsulatum ATCC 51196] gi|225793160|gb|ACO33250.1| putative tyrosine recombinase XerC [Acidobacterium capsulatum ATCC 51196] Length = 310 Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 53/279 (18%), Positives = 96/279 (34%), Gaps = 27/279 (9%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES---RK 127 L L +E S H F +Y ++++ K D + + HIR+ + R Sbjct: 16 LAALRNERGSSPHTLRAYTRELRDFAAYAERLLGK--DVGVKAMEHTHIRAYLGELYERG 73 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF----- 182 + +SA + L ++R KW R + +P V PK R T EDM + Sbjct: 74 LSKASAARALAAIRSWCKWLARHGELEQSPAALVATPKLPKHLPRVPTIEDMNRLVDASS 133 Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGF 241 + + ++ RL E L G+R ++ ++ +Q N + K V + D Sbjct: 134 EEVAAWPARDRLILELLYGCGIRNAELVGINLEDIQWTNEAILVRGKGRKERYVPIGDAA 193 Query: 242 MKLLAM-----------TPIGKETFFINND---KQKMNATQFSIWFKAKATKAGVNKS-- 285 + L +N + ++ K A G+ Sbjct: 194 AQALRAYLPERNQKLATAGKDSAALLLNARLRGQGRLTTRSVGRIVKQMALAQGLPADVH 253 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R T + GA + G + + + YT+ Sbjct: 254 PHTLRHAFGTHLLEEGADLRAIQELLGHERLSTTQRYTQ 292 >gi|254361499|ref|ZP_04977638.1| possible integrase/recombinase [Mannheimia haemolytica PHL213] gi|153093013|gb|EDN74034.1| possible integrase/recombinase [Mannheimia haemolytica PHL213] Length = 351 Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 59/339 (17%), Positives = 109/339 (32%), Gaps = 32/339 (9%) Query: 3 PSLRLPPFVTKERTRHGKIIYY--FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY 60 P P VT++ GK + Y +R I L FI A + Sbjct: 13 PENLRPKTVTRKS---GKTVIYWLYRTHGKTEISLGTNRNEAFIKA---------AQLNI 60 Query: 61 INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120 + T + YR A ++ ++ D +IT +HIR Sbjct: 61 ERESQTARITFGLVAKRYRDEVIPQKKASTAQTDLCK-IKNLLLFFNDAPLEEITPQHIR 119 Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 + RK TP SA + ++++A Y + P ++ + + + ++ Sbjct: 120 EYMIWRKDTPGSANNEFSMFSHIWQYAREWGYTNL-PSPNIGMKRYPIRKREIYVENNI- 177 Query: 181 QFKSFWSEGSQP-RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD 239 F+ + Q R + +G R D +H+ + I QKT + +E+ Sbjct: 178 -FQMVYEVADQDMRDLMDLAYITGQRPVDLVNIRKEHIFDGYLHIVQQKTQAKLRIEIVG 236 Query: 240 GFMKLL--AMTPIGKETFFINNDKQKMNATQFSIWF---KAKATKAGVNK-------SAH 287 ++ + F +K+ A + F + +A K Sbjct: 237 KLADIIQDRLEKATGTHLFSTKKGEKLTARKLGKRFTYIREQAVKNNPEYANEIMAFQFR 296 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 +R S T A + G +V +TY + A Sbjct: 297 DLRAKSGTDKALSLGEEAARQ-QLGHTSVQMTKTYIRKA 334 >gi|16082303|ref|NP_394769.1| site-specific integrase/recombinase XerD related protein [Thermoplasma acidophilum DSM 1728] gi|10640657|emb|CAC12435.1| site-specific integrase/recombinase XerD related protein [Thermoplasma acidophilum] Length = 283 Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 38/250 (15%), Positives = 88/250 (35%), Gaps = 18/250 (7%) Query: 91 SRISFESYFDQIIRKSGDFD--YRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAV 148 + + DQ + + + ++ + +K ++ LF A+ Sbjct: 25 TIKEYRFLVDQFLSFMNKKPDEITPMDIERYKNFLAVKKRYSKTSQYLAIKAVKLFYKAL 84 Query: 149 RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSD 208 V IN + PKR + ++++ ++ S ++ L Y+G+R + Sbjct: 85 DLR-VPIN----LTPPKRPSHMPVYLSEDEAKRLIEAASSDTRMYAIVSVLAYTGVRVGE 139 Query: 209 SCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDG-------FMKLLAMTPIGKETFFINN 259 C + + +I ++++ K V + + ++ L + F++N Sbjct: 140 LCNLKISDVDLQESIINVRSGKGDKDRIVIMAEECVKALGSYLDLRLSMDTDNDYLFVSN 199 Query: 260 DKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVD 317 + + + + + KAG+ K + H +R AT G + G +V Sbjct: 200 RRVRFDTSTIERMIRDLGKKAGIQKKVTPHVLRHTFATSVLRNGGDIRFIQQILGHASVA 259 Query: 318 QAETYTKGAD 327 + YT D Sbjct: 260 TTQIYTHLND 269 >gi|315152400|gb|EFT96416.1| tyrosine recombinase XerC [Enterococcus faecalis TX0031] Length = 299 Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 39/265 (14%), Positives = 94/265 (35%), Gaps = 25/265 (9%) Query: 85 GSLAVNSRISFE---SYFDQIIRKSGDFDY---RKITTKHIRSGVESRKHTPSSAIQFLT 138 + ++ +++ +F ++ SG+ +Y + + S + ++++ +S + + Sbjct: 18 RGYSEKTKKAYQEDIQHFFSFLKTSGNDNYLTVEHLDVRAYLSELYDQEYSRNSISRKIA 77 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRL 194 S+R +++ ++ E + NP V K++ R + +++M + + Sbjct: 78 SLRSFYQFLLKNEAIQENPFSYVHMKKKQLRLPRFFYEKEMDALFESAQGEQPLDLRNQA 137 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-ITVE------------LPDGF 241 E L +G+R S+ V + + G V L +G Sbjct: 138 LLEVLYGTGIRVSECANLTVDAVDFQASVLLVHGKGNKDRYVPFGSFAQDALKDYLENGR 197 Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299 L+ F+N+ +++ T K+ +N H +R AT + Sbjct: 198 ALLMTKYQKKHPYVFVNHHGEQITPTGIEYVLNQLIKKSSLNVEIHPHMLRHTFATHLLN 257 Query: 300 AGATAHELMATYGWKTVDQAETYTK 324 GA + G + + Y Sbjct: 258 NGADMRTVQELLGHANLSTTQIYAH 282 >gi|220921142|ref|YP_002496443.1| tyrosine recombinase XerD [Methylobacterium nodulans ORS 2060] gi|219945748|gb|ACL56140.1| tyrosine recombinase XerD [Methylobacterium nodulans ORS 2060] Length = 308 Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 45/272 (16%), Positives = 85/272 (31%), Gaps = 27/272 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKS-----GDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139 + N+ ++ D + + + +++R SSA + L+ Sbjct: 23 RGASANTLAAYRRDLDDYLAHLAAEGLDPAAVEAPMIRAYMADLDARGLKASSAARRLSC 82 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG---------- 189 +R ++ + Y +P V PKR + + ++ + S E Sbjct: 83 IRGFHRFLYAEGYAPTDPTAPVSGPKRGRALPKVLSVAEVDRLLSVAKEAVAQAPNLSEA 142 Query: 190 ---SQPRLAFEFLLYSGLRCSDSCRAGVQH-LQNNIFSIKTQKTGTIITVELPDGFM--- 242 + E L +GLR S+ L + + K G V L + Sbjct: 143 ARAQRLLCLLELLYATGLRVSELVALPRAAALTRERYLVVRGKGGRERLVPLTEAARAAM 202 Query: 243 --KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKFSATIS 297 L + G F +++ + F+ K A AG+ S H +R A+ Sbjct: 203 AAHLTMLAAPGPWLFPADSESGHLTRQAFARDLKLAAAAAGIRADRVSPHVLRHAFASHL 262 Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRI 329 GA + G + + YT D Sbjct: 263 LQNGADLRVVQELLGHADISTTQIYTHVLDER 294 >gi|326794173|ref|YP_004311993.1| integrase family protein [Marinomonas mediterranea MMB-1] gi|326544937|gb|ADZ90157.1| integrase family protein [Marinomonas mediterranea MMB-1] Length = 323 Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 51/302 (16%), Positives = 107/302 (35%), Gaps = 44/302 (14%) Query: 70 TLKWLISEYRK-SAHWGSLAVNSRISFESYFDQIIRKSG-DFDYRKITTKHIRSGVESRK 127 ++ + S Y + L+ ++ ++ Q + +G I K + + Sbjct: 3 SISRIASRYLQFCQKNRKLSGHTLKAYRIDLKQFVECTGVKTSVNAIDKKDLHKFHDYLA 62 Query: 128 HT---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLS----VERPKRK------------- 167 + SS + L +R +F+W ++E + + P ++ PKR Sbjct: 63 DSELSQSSIKRKLACIRAMFRWLEQEEEIEVTPFHKFNTSIKLPKRLPRNVNKSDLKRML 122 Query: 168 TEGIRPWTKEDMQQF---KSFWSEGSQPR--------LAFEFLLYSGLRCSDSCRAGVQH 216 T+G R ++ ++ + +S + R LA E +L +G+R S+ + Sbjct: 123 TQGRRTLDQKPLKSISDENTGFSYPTSKRDLNKLTGTLALELMLSTGMRVSELVGIQLDD 182 Query: 217 LQNNIFSIKTQKTGTI-ITVELPDG--------FMKLLAMTPIGKETFFINNDKQKMNAT 267 + IK G+ V LPD + K + F +N+ Q + Sbjct: 183 IFLTERKIKIFGKGSRERYVYLPDKEICQLIRHYRKARTIVESDSSNFLLNSRGQPASTQ 242 Query: 268 QFSIWFKAKATK--AGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 + A + ++ + H +R +A ++G + G ++ E YT Sbjct: 243 FIRKLIRLLAEQSSTQLHVTPHMLRHSAACELMESGLDIRFVQRLLGHSSISTTEIYTHV 302 Query: 326 AD 327 D Sbjct: 303 TD 304 >gi|312876873|ref|ZP_07736850.1| integrase family protein [Caldicellulosiruptor lactoaceticus 6A] gi|311796388|gb|EFR12740.1| integrase family protein [Caldicellulosiruptor lactoaceticus 6A] Length = 319 Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 28/276 (10%), Positives = 77/276 (27%), Gaps = 22/276 (7%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130 + + + + + +E + ++ D + S+ P Sbjct: 14 WEDALQLFLSYKKAQGRSDLTIRDYEIHIRAFFKRYPDCFNDTQKLRKCLIEYLSQPMKP 73 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS--- 187 + + +++ W V + + NP + K + D++ + Sbjct: 74 VTYNLRMKNLKAFLSWCVEEGIIPTNPIAKFKPRKTDDRIVEI----DIETLQKLLQLPD 129 Query: 188 ----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK----TQKTGTIITVELPD 239 G + L +G+R ++ H + KT + + Sbjct: 130 RKTFAGLRDYALMLLTLDTGIRPKEAFSLLKDHFDFKNMQVVIPSDVAKTRVSRVLPISP 189 Query: 240 GFMKLLAMTPIGKET-------FFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKF 292 + + F + + +N +++ + + + GV + +R Sbjct: 190 VTANAIKKLISSRHPQWDDSVPVFCSVTGKPLNRYRWNERMREYSKQLGVKIKPYDLRHM 249 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 A + G L G T++ + Y + Sbjct: 250 FALLYLKNGGYELSLQKIMGHTTLEMTKKYVHFTQQ 285 >gi|312792344|ref|YP_004025267.1| integrase family protein [Caldicellulosiruptor kristjanssonii 177R1B] gi|312179484|gb|ADQ39654.1| integrase family protein [Caldicellulosiruptor kristjanssonii 177R1B] Length = 398 Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 53/310 (17%), Positives = 101/310 (32%), Gaps = 46/310 (14%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR--- 126 LK ++ + +L ++ +ES + I+ G + + + +H+++ S+ Sbjct: 74 LKDWLNTWLWEYKKQTLRPSTFQDYESLINNHIVPAIGHYKLKDLRPEHLQALYNSKYGN 133 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE-GIRPWTKEDMQQFKSF 185 + S+ + A++ V N + PK KT+ IR T ++ Q+F + Sbjct: 134 GLSLSTIKHIHVILHSALDQALKNGLVVRNVSEATTLPKTKTKNEIRVLTLQEQQRFIAA 193 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQ---------------- 227 EG + R AF L SG+R + +L+ +IK Sbjct: 194 L-EGERLRPAFLLALASGVRLGELLALKWDCVNLKEGTITIKRSLRRIKTYDKNLPTKTM 252 Query: 228 ------KTGTII-TVELPD------------GFMKLLAMTPI--GKETFFINNDKQKMNA 266 KT I T+ +P + L + F + Sbjct: 253 LAFQEPKTAAGIRTIPVPPVILEELKEHRKRQLEERLQAGSLYEDNNLVFATELGTPIEP 312 Query: 267 TQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKG 325 F F KA ++ + H +R AT +A + G + Y+ Sbjct: 313 RNFLRVFYRIIEKANLDINFHALRHTYATRLLEANEHPKVVQELLGHNDISTTLNIYSHV 372 Query: 326 ADRIRLGIKN 335 I+ Sbjct: 373 MPEIKKAAAM 382 >gi|293371016|ref|ZP_06617558.1| integron integrase [Bacteroides ovatus SD CMC 3f] gi|292633946|gb|EFF52493.1| integron integrase [Bacteroides ovatus SD CMC 3f] Length = 368 Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 39/297 (13%), Positives = 94/297 (31%), Gaps = 22/297 (7%) Query: 41 STFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD 100 F Y + + K+ TL Y + + ++ ++ +YF Sbjct: 62 PDFYDRYSPHAYIDYSRVYVRHPKPKREYTLP---KGYLELLEQKRYSPSTVKTYRAYFS 118 Query: 101 QIIRKSGDFDYRKITTKHIRSGV----ESRKHTPSSAIQFLTSMRVLFKWAV--RQEYVA 154 + + ++ I + +K + S + +++ ++ +++Y Sbjct: 119 DFMEYHKGRNIDRLKVPDINKYILYLVNEKKISVSQQNMRINAIKFYYEQVKGGKRQYYG 178 Query: 155 INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGV 214 + R K +K ++++ + S + + +GLR S+ Sbjct: 179 -----GITRAKEYKSLPEVLSKNEIKRILAQIS-NIKHHCMISLVYSAGLRRSELLNLTP 232 Query: 215 QHLQNNIFSIKTQKTGTI-----ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF 269 Q + + S++ G ++ +L + K F ++ +A+ Sbjct: 233 QDINSETMSVRIMGKGKKCRYSLLSPKLLEELRHYFREYRPQKWLFEGETPGEQYSASAL 292 Query: 270 SIWFKAKATKAGVNKSAHG--VRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 K A +AG+ H +R AT + G H + G + Y Sbjct: 293 VKVLKEAAHRAGIKHRVHVHMLRHSFATHLLEQGTDLHTIQELLGHNDIKTTTIYLH 349 >gi|307728182|ref|YP_003905406.1| tyrosine recombinase XerC [Burkholderia sp. CCGE1003] gi|307582717|gb|ADN56115.1| tyrosine recombinase XerC [Burkholderia sp. CCGE1003] Length = 307 Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 47/291 (16%), Positives = 92/291 (31%), Gaps = 33/291 (11%) Query: 73 WLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KH 128 I+ Y + H L+ ++ + D++ + + +T IR V Sbjct: 5 DFIAAYLSNLEHERRLSAHTLRGYTHELDELRLLAKGRPLQSLTAVDIRGAVARAHAGGL 64 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS- 187 T S L++ R ++W + + NP +V PK+ + + +D + Sbjct: 65 TARSISHRLSAWRAFYRWLAGRIDLPANPVATVRAPKQPKTLPKALSVDDANRLMETPPA 124 Query: 188 ---EGSQPRLAFEFLLYSGLRCSDSCRA-------------GVQHLQNNIFSIKTQKTGT 231 EG + E SGLR ++ G L + + K Sbjct: 125 ASAEGLRDHAMLELFYSSGLRLAELVGLDVRFADADGYRSAGWLKLDSAEVEV-LGKGNR 183 Query: 232 IITVELPDGFMKLLAMTPIGKE--------TFFINNDKQKMNATQFSIWFKAKATKAGVN 283 V + ++ L ++ F++ +++ K A AG+ Sbjct: 184 RRIVPVGSKALEALNAWLAVRDQMVRLDPHPLFLSARGNRLSPNVVRERVKRAALVAGIP 243 Query: 284 K--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 H +R AT + + G ++ + YT G D L Sbjct: 244 ANVHPHVLRHSFATHVLQSSGDLRAVQELLGHASITATQVYT-GLDFQHLA 293 >gi|325271628|ref|ZP_08138130.1| site-specific tyrosine recombinase XerC [Pseudomonas sp. TJI-51] gi|324103232|gb|EGC00577.1| site-specific tyrosine recombinase XerC [Pseudomonas sp. TJI-51] Length = 299 Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 39/259 (15%), Positives = 91/259 (35%), Gaps = 19/259 (7%) Query: 85 GSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSGVESRKHTP---SSAIQFLT 138 ++ ++ + + D++ ++ G D++ + + +R V H S + L+ Sbjct: 16 RQVSEHTLLGYRRDLDKVIAYCKEQGIADWQALQIQQLRQLVARLHHHGQASRSLARLLS 75 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW-TKEDMQQFKSFWS---EGSQPRL 194 ++R L+++ R+ +P + PK + + + T +Q + + Sbjct: 76 AVRGLYRYLNREGLCQHDPAAGLSAPKGERKLPKVLDTDRALQLLDGGVDDDFIARRDQA 135 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVEL----PDGFMKLLAMTP 249 E SGLR S+ + HL ++ K G + + + + + Sbjct: 136 MLELFYSSGLRLSELSNLDLDHLDLAAGLVQVLGKGGKARVLPVGRKAREALKEWYRLRG 195 Query: 250 IG---KETFFINNDKQKMNATQFSIWFKAK-ATKAGVNKSAHGVRKFSATISADAGATAH 305 IG FI +++ KA + G + H +R A+ ++ Sbjct: 196 IGNPRDRAVFITRQGNRISPRTVQQRVKAVGERELGQHLHPHMLRHSFASHVLESSQDLR 255 Query: 306 ELMATYGWKTVDQAETYTK 324 + G + + YT Sbjct: 256 AVQEMLGHADISTTQIYTH 274 >gi|314948558|ref|ZP_07851938.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus faecium TX0082] gi|313645055|gb|EFS09635.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus faecium TX0082] Length = 382 Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 68/382 (17%), Positives = 137/382 (35%), Gaps = 58/382 (15%) Query: 14 ERTRHGKIIYYFRK--GHGRRI-RLPYPHESTFI--PAYMSALTGSTPKREYINSPRKKP 68 + ++G+ +YF+ G + Y + F +AL+ + + P Sbjct: 7 YKKKNGEKAWYFKTYLGIDPLTGKKKYTTKRGFRTQKEAKTALSRLELELQKTGMPTSTN 66 Query: 69 TTLK-----WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123 TT K WL Y+K+ S + ++I F + I K G+ KI T + + V Sbjct: 67 TTFKEAAELWL-ESYKKTVKESSYS-RTKIIFNKH---IYPKFGNIKLSKINTAYCQKVV 121 Query: 124 ESRKHTPSSAIQ--FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW---TKED 178 SS F+ M +FK+A+ + NP L++ PK + + + TKE Sbjct: 122 NDWSEKGSSKQYPLFVNYMNKVFKYAINIGLTSDNPTLNLIIPKPQIKTDKKLKLYTKEQ 181 Query: 179 MQQFKSFWSEGS------QPRLAFEFLLYSGLRCSDSCRAGVQHL--------------- 217 ++ F + S+ + F L +SG R + ++ Sbjct: 182 LELFLNEVSQEQNPYFKNRDYTLFRLLAFSGCRIGEILALTWDNINFKTNEMAIKKTVAR 241 Query: 218 -------------QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM 264 ++N +KT + + L + F N++ Sbjct: 242 SDKYYISETPKTKKSNRIIYLDEKTIKQLKFWKLEQRKYLFQLGFTKANYLFTNDENNFT 301 Query: 265 NATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETY 322 + + +AG+ HG R A++ +AGA E+ G + +TY Sbjct: 302 INQSVAERYNIYRERAGLPYIGLHGFRHTHASMLYEAGADHKEVQERMGHANIKTTMDTY 361 Query: 323 TKGADRIRLGIKNSRRISSVVD 344 T + + + ++++++ ++ Sbjct: 362 THITNSKK--EETTQKLTNYMN 381 >gi|326790923|ref|YP_004308744.1| integrase family protein [Clostridium lentocellum DSM 5427] gi|326541687|gb|ADZ83546.1| integrase family protein [Clostridium lentocellum DSM 5427] Length = 365 Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 46/338 (13%), Positives = 102/338 (30%), Gaps = 38/338 (11%) Query: 17 RHGKIIY---YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73 + G Y Y G+R A L ++ T Sbjct: 7 KRGNRYYPMIYLGYIGGKRKYKSGGGFDKRSEAKEELLKMQNKIKKNSIMIEADDMTFGE 66 Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESRKH-TPS 131 L ++ + +++ + +++ ++ ++ G+ + I HI+ + + KH +P+ Sbjct: 67 LAEQWYEMHAKPTISYRALENYKGILNKSLVPAFGNVKLKTIQPIHIQRYLMTLKHLSPA 126 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191 + ++ ++ + V + + I+P + P T+ W + +F + + ++ Sbjct: 127 TIRKYFYVLKSIMDKGVEWKILEISPIKGITLPSLTTQEFTVWDNVQINKFLNIVKD-TK 185 Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQN------------NIFSIKTQKTGTIITVELPD 239 + F +G+R + C F +K KT + + Sbjct: 186 WYVPFLLAFTTGMRQGEICGLKWSDYNTITGDISVSRSMQRNFKLKDTKTKSSRRKIVL- 244 Query: 240 GFMKLLAMTPIGKET----------------FFIN-NDKQKMNATQFSIWFKAKATKAGV 282 K K F N+ + +N FK + + Sbjct: 245 -LKKTKLALDYQKRCQEENENLLGKQYINSGFICTHNNGESINPENLGKTFKKLIKEYKL 303 Query: 283 -NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319 H +R ATI G + G V Sbjct: 304 EPIRFHDIRHSFATILLQNGTNPKIVSEILGHSDVQTT 341 >gi|288573121|ref|ZP_06391478.1| integrase family protein [Dethiosulfovibrio peptidovorans DSM 11002] gi|288568862|gb|EFC90419.1| integrase family protein [Dethiosulfovibrio peptidovorans DSM 11002] Length = 319 Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 50/291 (17%), Positives = 97/291 (33%), Gaps = 19/291 (6%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131 + + A + + R + T + S+ P+ Sbjct: 17 AQALDTFLTFKKATGAAPRTMTDYRKTVGAFFRDYEEAWNGPHTMRPSLVSWLSQDIAPA 76 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAI--NPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 + L +R ++WAV +E +P ++R K + + R + ED++ G Sbjct: 77 TYNLRLVYLRAFWRWAVEEELQPDSPDPFRGLKRRKDRGK-FRVVSLEDVKALLGGIPRG 135 Query: 190 S----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK----TQKTGTIITVELPDGF 241 S + R A F L +R + L + ++ KT T+ L G Sbjct: 136 SYAGERDRCAVVFTLDVAIRPGEMLHLLPGDLDLSGLTVTIPAHVAKTREARTLPLSPGT 195 Query: 242 MKLLAMTPIGKET-------FFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSA 294 + +L + + F + + M+ T + K A +A V+ + + +R + Sbjct: 196 VDVLRAFLRYRPSSWPPTVPVFASETGRPMDTTHWGHRIKNHARRADVDLTPYDLRHAAC 255 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNSRRISSVVD 344 T+ AG L G YT D +R + S I ++ Sbjct: 256 TLHLRAGMNTLVLQKLMGHTGPQMTMRYTHLDIDDLRDQQRASSPIEDLIP 306 >gi|325506468|gb|ADZ18106.1| site-specific tyrosine recombinase xerD [Chlamydophila psittaci 6BC] gi|328914913|gb|AEB55746.1| integrase/recombinase XerD [Chlamydophila psittaci 6BC] Length = 299 Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 40/264 (15%), Positives = 86/264 (32%), Gaps = 25/264 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH---IRSGVESRKHTPSSAIQFLTSMR 141 L+ NS ++ ++ + +I+ + RK ++ + L +++ Sbjct: 22 RGLSCNSISAYIQDITLFLKINAITSIAEISQDSVHLFVDQLHKRKEAEATLARRLIALK 81 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS-------EGSQPRL 194 V F++ + + P +E PK T +++ + ++ Sbjct: 82 VFFRFLKEAKLLEHPP--LIEHPKIWKRLPTVLTPKEVDTLLAIPKKTTTSSMISTRDTA 139 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD-----------GFMK 243 L +G+R S+ C + + ++ + T K V L F + Sbjct: 140 ILHTLYSTGIRVSELCGLHIGDVSDDFLRV-TGKGSKTRLVPLGKLASEAIDAYLCPFRE 198 Query: 244 LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGA 302 L + F++ +K+ + A + + S H +R AT D A Sbjct: 199 NLQKKQPEEHHLFLSIRGRKLERSCVWKRIHYYAKQVTHKRVSPHSLRHAFATHLLDNKA 258 Query: 303 TAHELMATYGWKTVDQAETYTKGA 326 + G + E YT A Sbjct: 259 DLRVIQEMLGHARIASTEVYTHVA 282 >gi|42520593|ref|NP_966508.1| phage integrase family site specific recombinase [Wolbachia endosymbiont of Drosophila melanogaster] gi|42410332|gb|AAS14442.1| site-specific recombinase, phage integrase family [Wolbachia endosymbiont of Drosophila melanogaster] Length = 309 Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 42/286 (14%), Positives = 90/286 (31%), Gaps = 34/286 (11%) Query: 71 LKWLISEYRK-SAHWGSLAVNSRISFESYFDQIIRKS-----GDFDYRKITT------KH 118 L +I ++ + S + N+ S+ +I G+ + + + Sbjct: 3 LGSIIEKWYEWLRRNRSYSPNTLESYMRDLKDLISFLNTHIGGEVNVGTLEKLSVPELRS 62 Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCL-SVERPKRKTEGIRPWTKE 177 + +R S + L+ +R FK+ ++ + N + S+ RP ++ + + Sbjct: 63 WLTSRYARGVNARSNTRALSVIRNFFKY-IKNNHNIDNEAVFSLSRPIQRRTLPKALSIP 121 Query: 178 DMQQFKSFWSEGS--------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229 D++ + L +GLR S++ V + N I T K Sbjct: 122 DIKTLLKEMKLSDLGESWVVKREIAIIVLLYSTGLRISEALNLRVSDINNESL-IVTGKG 180 Query: 230 GTIITVELPDGFMKLLA---------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKA 280 V + K + T + F+ +K+ T + + Sbjct: 181 DKQRQVFILPVVKKCIQEYVKACPYLGTNNETQYLFLGVRGKKLGRTYVANRLQKIRRML 240 Query: 281 GVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 + S H R AT + G +++ + YT Sbjct: 241 NLPEILSPHAFRHSFATHLLQEDIDIRSIQQLLGHSSLETTQIYTH 286 >gi|222528753|ref|YP_002572635.1| integrase family protein [Caldicellulosiruptor bescii DSM 6725] gi|222455600|gb|ACM59862.1| integrase family protein [Caldicellulosiruptor bescii DSM 6725] Length = 325 Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 44/296 (14%), Positives = 88/296 (29%), Gaps = 42/296 (14%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR-- 126 T + + L + S+ + I K G + ++ I+ S Sbjct: 12 TFSQWLDIWMNQFMKIKLRPTTYSSYIQLINKHIKPKLGHIQLQNLSPLAIQECYNSLLL 71 Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 +P + + K A++ Y+ N +V PK + I+ + E + F Sbjct: 72 ENLSPKTVKNIHVIIHSALKQAIKCGYINQNVSEAVALPKVERPEIKTLSSEQVTTFLQA 131 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT----------- 234 S AF LY+GLR + + + +I +++ + Sbjct: 132 AQTDSL-YPAFLLELYTGLRRGELLGLKWDDIDFDNCTIHVKRSLVRVYDHNLKKTTLLL 190 Query: 235 -----------VELPDGFMKLLAMTPIGKETF-------------FINNDKQKMNATQFS 270 + +PD + L + F+ ++ F Sbjct: 191 QPPKTKAGYRVIPIPDFVVAELKELYEEHQRIKLSQPNFNSLNLMFVTTQGTPIDPRNFE 250 Query: 271 IWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324 FK KA + N H +R AT+ + G + + + Y+ Sbjct: 251 RKFKQLLKKANLPNIRLHDLRHTVATLLLQQNVHPKIVQEILGHRDISTTLDIYSH 306 >gi|169632680|ref|YP_001706416.1| site-specific tyrosine recombinase [Acinetobacter baumannii SDF] gi|169151472|emb|CAP00223.1| site-specific tyrosine recombinase [Acinetobacter baumannii] Length = 308 Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 49/279 (17%), Positives = 98/279 (35%), Gaps = 27/279 (9%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGVESR---- 126 L+S + K + + ++ ++E + + D R + +R + R Sbjct: 10 QLLSMWLKERKIQNQSEHTITAYERDVRSFLEFCELKKVDLRNVEASDLREYLAQRVEQD 69 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + + SS + LTS+R KWA + +Y+ INP + ++ E + Q Sbjct: 70 QLSSSSMQRHLTSIRQFMKWAEQGKYLEINPTDDFKLKRQPRPLPGMIDIETVNQILDQP 129 Query: 187 SEG--------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV--- 235 + + E L SGLR ++ ++ + N ++ G + Sbjct: 130 MPEKPVDQQLWLRDKAMLELLYSSGLRLAELQGLTIKDIDFNRQLVRITGKGNKTRIVPF 189 Query: 236 --ELPDGFMKLLAMTPIGKETF------FINNDKQKMNATQFSIWFKAKATKAGV--NKS 285 + + + L + I K F FI+ + Q K +A +AGV + Sbjct: 190 GKKAKESLLNWLKIYNIWKGHFDQNASVFISQRGGALTPRQIEKRVKLQAQRAGVNVDLH 249 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R A+ + + G + + YT Sbjct: 250 PHLLRHCFASHMLSSSGDLRSVQEMLGHSNLSTTQIYTH 288 >gi|296132971|ref|YP_003640218.1| integrase family protein [Thermincola sp. JR] gi|296031549|gb|ADG82317.1| integrase family protein [Thermincola potens JR] Length = 282 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 39/274 (14%), Positives = 91/274 (33%), Gaps = 21/274 (7%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE----SRKHTPSSAIQFLTSM 140 + + + + + G + +R + RK + S Q +++ Sbjct: 15 AGFSPKTHDDYLRHVKHFQKHFG-KPLEHMGYDEVREFLHHAITQRKLSCSYVNQTYSAI 73 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL 200 R ++ + ++ N V R KR+ + ++++ + + + Sbjct: 74 RFFYETVLGWDW---N-MKQVPRVKREKTLPAVLSIDEVKAIFNVTK-NIKHKAILMTTY 128 Query: 201 YSGLRCSDSCRAGVQHLQNN--IFSIKTQKTGTIITVELPDGFMKLLAMTPIG-KETFFI 257 +GLR + R + + + IK K L + +L + ++++ Sbjct: 129 AAGLRVGEVTRLKISDIDSKNMQILIKLGKGKKARYSLLSPANLSILRQYWRQYRPSYWL 188 Query: 258 NNDK---QKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYG 312 K + ++ F AG+ K S H +R AT +AG + G Sbjct: 189 FPGKPSDKPISVRTVQQIFYDAKVLAGIQKDVSIHTLRHCFATHLLEAGTDILHIQQLLG 248 Query: 313 WKTVDQAETYTKGADRIRLGIKNSRRISSVVDSD 346 ++ Y R+ + N + ++D D Sbjct: 249 HTSIHTTCIYLH---LRRMDVLNVKSPLDLLDGD 279 >gi|161507474|ref|YP_001577428.1| integrase-recombinase [Lactobacillus helveticus DPC 4571] gi|160348463|gb|ABX27137.1| Integrase-recombinase [Lactobacillus helveticus DPC 4571] Length = 242 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 35/221 (15%), Positives = 81/221 (36%), Gaps = 21/221 (9%) Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 + RK SS + ++S+ F++ R++++ I+P + + + + + +++Q Sbjct: 4 LADRKLVRSSQARQMSSLHSFFRFLTRRKFIKIDPTQGITLRRGEKKLPEFFFGNELKQV 63 Query: 183 KSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI------ 232 + FE +G+R S+ ++ + N+ +I G Sbjct: 64 FDSLKGNKPLTMRNLALFELFYATGMRVSEVSNLTLRQIDLNLQTILVHGKGNKDRYVAF 123 Query: 233 -------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS 285 + L D LL ++ F++N ++ + +AG++ Sbjct: 124 DDHTKKSLVRYLEDARPNLLKDET--EQHVFLSNLGNPLSKRGIEYVMQKTFNQAGISGK 181 Query: 286 --AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R AT + GA + G ++ + YT Sbjct: 182 VHPHELRHTFATAMLNNGADLRSVQELLGHSSLSATQIYTH 222 >gi|218902477|ref|YP_002450311.1| integrase/recombinase [Bacillus cereus AH820] gi|218540144|gb|ACK92542.1| integrase/recombinase [Bacillus cereus AH820] Length = 306 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 43/282 (15%), Positives = 96/282 (34%), Gaps = 31/282 (10%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSGVESRK 127 L++ + E+++ + +L+ + + + ++ + D R I ++S + K Sbjct: 3 LRFAMKEFQEEKEYNNLSHRTIEVYMATLNEFRNFCSELEIVDLRDIREVTVKSYLRYCK 62 Query: 128 HTPSSA----IQFLTSMRVLFKWAVRQEYVAI--NPCLSVERPKRKTEGIRPWTKEDMQQ 181 T + L +R+ F + +E + NP ++ K T+ I +T +QQ Sbjct: 63 KTRGNGVVTCNSKLHHLRIFFNYWQNEEVMEHKDNPVRKLKPAKEDTK-IEVFTDYHIQQ 121 Query: 182 FKSFWSE---------GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN-NIFSIKTQKTGT 231 ++ G + LL +G+R + + + N + K Sbjct: 122 MLRYYRRLKTRDKSFFGYRDHAIIVLLLSTGIRLGELVNIQWKDIDLVNRSVVLFGKARK 181 Query: 232 IITVELPDGFMKLLA--MTPIGKE------TFFINNDKQKMNATQFSIWFKAKATK---A 280 ++ + D K + + KE F + + ++++ + F+ + Sbjct: 182 QQSIPITDKLTKEICEWRIFVEKELGSIPQYLFTSREGKQLSPNAVKLIFQRLSKVMNFK 241 Query: 281 GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 V S H R A G L + E Y Sbjct: 242 DVRLSCHTFRHSFAHRCIMQGMDVFTLQKLLRHSNLRMTERY 283 >gi|193078105|gb|ABO13046.2| site-specific tyrosine recombinase [Acinetobacter baumannii ATCC 17978] Length = 308 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 48/279 (17%), Positives = 98/279 (35%), Gaps = 27/279 (9%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGVESR---- 126 L+S + K + + ++ +++ + + D R + +R + R Sbjct: 10 QLLSMWLKERKIQNQSEHTITAYKRDVKSFLEFCELKKVDLRNVEASDLREYLAQRVEQD 69 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + + SS + LTS+R KWA + +Y+ INP + ++ E + Q Sbjct: 70 QLSSSSMQRHLTSIRQFMKWAEQGKYLEINPTDDFKLKRQPRPLPGMIDIEMVNQILDQP 129 Query: 187 SEG--------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV--- 235 + + E L SGLR ++ ++ + N ++ G + Sbjct: 130 MPEKPVDQQLWLRDKAMLELLYSSGLRLAELQGLTIKDIDFNRQLVRITGKGNKTRIVPF 189 Query: 236 --ELPDGFMKLLAMTPIGKETF------FINNDKQKMNATQFSIWFKAKATKAGV--NKS 285 + + + L + I K F FI+ + Q K +A +AGV + Sbjct: 190 GKKAKESLLNWLKIYNIWKGHFDQNASVFISQRGGALTPRQIEKRVKLQAQRAGVNVDLH 249 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R A+ + + G + + YT Sbjct: 250 PHLLRHCFASHMLSSSGDLRSVQEMLGHSNLSTTQIYTH 288 >gi|27363605|ref|NP_759133.1| site-specific recombinase XerD [Vibrio vulnificus CMCP6] gi|27359721|gb|AAO08660.1| Site-specific recombinase XerD [Vibrio vulnificus CMCP6] Length = 348 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 47/304 (15%), Positives = 101/304 (33%), Gaps = 53/304 (17%) Query: 88 AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS----GVESRKHTPSSAIQFLTSMRVL 143 + + + +Q+ +K D + K+ K + + ++ +S + ++R Sbjct: 34 SAKTVRKYRGLLEQL-KKFVDGQFDKVELKDLEQFSGGWLHRAGYSAASRKVAVAAIRGF 92 Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRLAFEFL 199 + + ++ VA NP + PK R + + G + L Sbjct: 93 YSFLAKRRLVAKNPASDLVYPKIGRRLPRFMGLKSAEALLFQPELTSLSGVRDSAMLSLL 152 Query: 200 LYSGLRCSDSCRAG------VQHLQNNIFSIKTQKTGTI---ITVEL-----------PD 239 + G R + C Q+ + +I+T + G + V L Sbjct: 153 IGCGFRVAGLCGLNESQLIWYQYGEVERLAIRTMEKGERERLVPVPLEAMLLVQAYLGHP 212 Query: 240 GFMKLLAMTPIGKETFFINNDKQK------------MNATQFSIWFKAKATKAGVN---K 284 + + G + F+N + ++ K A AGV Sbjct: 213 DLKHVDRLLDDGDQVLFVNLRNRHVPEWEHRGELRRLSTRAVDRMIKKYAIAAGVPEDQA 272 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344 AH +R T A++ ++ ++ A G +E YT + R++++V+D Sbjct: 273 HAHALRHLFGTELAESDSSTLQIQALMGHADPKTSEIYTH---------ISMRKMTNVLD 323 Query: 345 SDDP 348 +P Sbjct: 324 KGNP 327 >gi|302391372|ref|YP_003827192.1| integrase family protein [Acetohalobium arabaticum DSM 5501] gi|302203449|gb|ADL12127.1| integrase family protein [Acetohalobium arabaticum DSM 5501] Length = 310 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 36/212 (16%), Positives = 74/212 (34%), Gaps = 16/212 (7%) Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ--- 191 + + S++ + + + + N + PK++ ++++ Q E S+ Sbjct: 90 RKIASLKSFWNYLCKVRKLTDNIASDLSLPKKEPTTEIYLKQKEINQLFVAIDEISRNII 149 Query: 192 -PRLAFEFLLYSGLRCSDSCRAGVQHLQNN--IFSIKTQKTGTIITVELPDGFMKLLA-- 246 + LLY+G+R S+ + + I I K G + + M + Sbjct: 150 RDKSILAVLLYTGIRVSECINLNLSDIDLESRILRIVKGKGGKSRMIGINKELMPYIKDY 209 Query: 247 -----MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISAD 299 I F++ ++N FK +AG+ + H R + Sbjct: 210 LQKRQQVLIEGNPLFLSERGNRLNKRTLQYHFKRWVEEAGLPDEVTVHKCRHTFLSHLCQ 269 Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRL 331 GA+ E+ G K + + Y D+ RL Sbjct: 270 NGASLAEIKQISGHKNLASLQRYLHN-DQKRL 300 >gi|59713090|ref|YP_205866.1| site-specific tyrosine recombinase XerC [Vibrio fischeri ES114] gi|197336470|ref|YP_002157268.1| tyrosine recombinase XerC [Vibrio fischeri MJ11] gi|59481191|gb|AAW86978.1| site-specific tyrosine recombinase [Vibrio fischeri ES114] gi|197317960|gb|ACH67407.1| tyrosine recombinase XerC [Vibrio fischeri MJ11] Length = 303 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 40/260 (15%), Positives = 87/260 (33%), Gaps = 20/260 (7%) Query: 85 GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGV---ESRKHTPSSAIQFLT 138 L++ ++ +++ I + G ++ + +R SS L+ Sbjct: 24 KGLSIYTQRNYKRQLTTIAEQLVELGVESWQDVDAGWVRQVTSKGMREGLKASSLSTRLS 83 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---WSEGSQPRLA 195 S+R F + V + + NP V P++ + ++M Q + R Sbjct: 84 SLRSFFDFLVLRNVLTANPAKGVSAPRKSRPLPKNIDVDEMGQLLEVNEDDPLSIRDRAI 143 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLL--------A 246 E + +GLR ++ V+ +Q ++ K V + L Sbjct: 144 MELMYGAGLRLAELVSIDVRDIQLRQGELRVIGKGDKERKVPFSGQAKEWLGHWLRVRNQ 203 Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATA 304 + ++ F++ +++ K GVN S H +R AT ++ Sbjct: 204 LAKPEEKGLFVSKLGVRISHRNVQKRMAEWGLKQGVNSHISPHKLRHSFATHMLESSGNL 263 Query: 305 HELMATYGWKTVDQAETYTK 324 + G + + + YT Sbjct: 264 RAVQELLGHENISTTQIYTH 283 >gi|183984816|ref|YP_001853107.1| prophage integrase [Mycobacterium marinum M] gi|183178142|gb|ACC43252.1| prophage integrase [Mycobacterium marinum M] Length = 385 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 54/355 (15%), Positives = 113/355 (31%), Gaps = 48/355 (13%) Query: 7 LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFI-------------PAYMSALTG 53 +P + K G+ Y R + P+ + A+ + G Sbjct: 5 VPRGIRKRTNSAGQARYQVR------YLVRDPNSPSGWVETSSTFATMREARAFKADRDG 58 Query: 54 STPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYR 112 PR +L + ++Y S +++ + + +++ +I + G Sbjct: 59 EAAIGARRFDPRLGRASLSAIWTQYSASKQ-PAVSPKTWSGYAQHWELRISPRFGHVPVD 117 Query: 113 KITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK-TEGI 171 +I+ K ++ + P + + L +R + A + INP V + E Sbjct: 118 EISRKDVQQFIGGLTVGPWAKLATLRLLRSILDMAREDGRIHINPAQGVSSGRIPARERH 177 Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ------------- 218 R + ++ + L ++GLR S+ V + Sbjct: 178 RYLSATEVAALAHACGD---QGDIVTILAFTGLRWSELVGLRVGDIDLKARRLYVRQAAP 234 Query: 219 --NNIFSIKTQKTGTII-TVELPDGFMKLLAMTPIGKET---FFINNDKQKMNAT---QF 269 + KT + TV LP + L + T + + + + + Sbjct: 235 DVEGRIIVGPPKTRAAVRTVPLPRIVIDALKPRIENRSTKEQAITSPNGGFLRSNNWRRH 294 Query: 270 SIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYT 323 + W KA + H +R A+++ +GA + T G T A Y+ Sbjct: 295 THWNKALKKTGLAPLTIHDLRHTYASLARKSGADLRYVQKTMGHSTPTVTANIYS 349 >gi|118462850|ref|YP_882918.1| site-specific tyrosine recombinase XerC [Mycobacterium avium 104] gi|118164137|gb|ABK65034.1| tyrosine recombinase XerC [Mycobacterium avium 104] Length = 301 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 35/267 (13%), Positives = 86/267 (32%), Gaps = 26/267 (9%) Query: 86 SLAVNSRISFESYFDQIIRKSGDFD--YRKITTKHIRSGVESRKHT---PSSAIQFLTSM 140 + ++R ++ ++ +G+ ++ +RS + + ++ + +++ Sbjct: 20 GRSAHTRRAYLGDLRSLLAFAGERGTGLDGLSLPLLRSWLSAAAAGGVARTTLARRTSAV 79 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED--------MQQFKSFWSEGSQP 192 + WAVR+ + +P ++ PK ++ + Sbjct: 80 KAFTAWAVRRGLLTADPAARLQVPKTHRTLPAVLRQDQALGAMAAAKNGAAQGDPIALRD 139 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMT--- 248 RL E L +G+R S+ C + + ++ K +V + L Sbjct: 140 RLIVEMLYATGIRVSELCGLDIDDVDTGRRLVRVLGKGNKQRSVPFGAPAGEALHAWLAD 199 Query: 249 -------PIGKETFFINNDKQKMNATQFSIWFKA--KATKAGVNKSAHGVRKFSATISAD 299 + ++++ Q A + HG+R +AT + Sbjct: 200 GRPALANAESGPALLLGARGRRLDVRQARTVVHQTIAAVSGAPDMGPHGLRHSAATHLLE 259 Query: 300 AGATAHELMATYGWKTVDQAETYTKGA 326 GA + G ++ + YT A Sbjct: 260 GGADLRVVQELLGHSSLATTQLYTHVA 286 >gi|41409056|ref|NP_961892.1| site-specific tyrosine recombinase XerC [Mycobacterium avium subsp. paratuberculosis K-10] gi|41397415|gb|AAS05275.1| XerC [Mycobacterium avium subsp. paratuberculosis K-10] Length = 301 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 35/267 (13%), Positives = 86/267 (32%), Gaps = 26/267 (9%) Query: 86 SLAVNSRISFESYFDQIIRKSGDFD--YRKITTKHIRSGVESRKHT---PSSAIQFLTSM 140 + ++R ++ ++ +G+ ++ +RS + + ++ + +++ Sbjct: 20 GRSAHTRRAYLGDLRSLLAFAGERGTGLDGLSLPLLRSWLSAAAAGGVARTTLARRTSAV 79 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED--------MQQFKSFWSEGSQP 192 + WAVR+ + +P ++ PK ++ + Sbjct: 80 KAFTAWAVRRGLLTADPAARLQVPKTHRTLPAVLRQDQALGAMAAAKTGAAQGDPIALRD 139 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMT--- 248 RL E L +G+R S+ C + + ++ K +V + L Sbjct: 140 RLIVEMLYATGIRVSELCGLDIDDVDTGRRLVRVLGKGNKQRSVPFGAPAGEALHAWLAD 199 Query: 249 -------PIGKETFFINNDKQKMNATQFSIWFKA--KATKAGVNKSAHGVRKFSATISAD 299 + ++++ Q A + HG+R +AT + Sbjct: 200 GRPALANAESGPALLLGARGRRLDVRQARTVVHQTIAAVSGAPDMGPHGLRHSAATHLLE 259 Query: 300 AGATAHELMATYGWKTVDQAETYTKGA 326 GA + G ++ + YT A Sbjct: 260 GGADLRVVQELLGHSSLATTQLYTHVA 286 >gi|325678355|ref|ZP_08157975.1| site-specific recombinase, phage integrase family [Ruminococcus albus 8] gi|324109856|gb|EGC04052.1| site-specific recombinase, phage integrase family [Ruminococcus albus 8] Length = 403 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 65/391 (16%), Positives = 128/391 (32%), Gaps = 70/391 (17%) Query: 9 PFVTKERTRHGK-IIYYFRKGHGRRIRLPYPHE------STFIPAYMSALTGSTP----K 57 ++ + + + G+ Y FR +G + + + A + + Sbjct: 2 AYIERRKNKKGELTAYRFRVYNGYDVNGKQMVQFKTWVPPEGMTAKQAEKEAQRLAVLFE 61 Query: 58 REYINSPRKKPTTLKWLISEYRKSAHWGSLAVN-SRISFESYFD-QIIRKSGDFDYRKIT 115 E + + L ++ + L + + E +I G KIT Sbjct: 62 EECAHGQVTATVKFQKLCEQWF--GEYAELNHRSTTLQREHLLAGRIYPALGHLRIDKIT 119 Query: 116 TKHIRSGVESRKHTPSSAIQ------------FLTSMRVLFKWAVRQEYVAINPCLSVER 163 + I+ + S P + + L+ + +F++A+R + ++ NPC V Sbjct: 120 ARDIQKFINSLA-KPGANKRNGKPLSQKTMRHHLSFISSIFEYAIRLDMISTNPCSKVII 178 Query: 164 PKRKTEGI-------RPWTKEDMQQFKSFWSEGS-QPRLAFEFLLYSGLRCSDSCRAGVQ 215 PK G +TKE ++F + E + R+ F +Y+G R + + Sbjct: 179 PKIDANGKVYKKPEKHIYTKEQAKEFMTILREAPIKYRVFFTLAIYTGCRRGEILGIEWK 238 Query: 216 HLQ----------------NNIFSIKTQKTGTIIT-VELPDGFMKLLAMTPIGKETF--- 255 ++ N KT V+LP +KLL ++++ Sbjct: 239 NIDFENRTIMIDHTSNYTAKNGIYTDATKTDKSTRLVDLPPTVIKLLKAYKHDQDSYKAN 298 Query: 256 -----------FINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGAT 303 F D M+ W K + + H +R F A++ +AG Sbjct: 299 LGDKWQEHDRLFTKWDGAPMHPATPYSWLKKECERRSFPFYGVHTLRHFFASVEIEAGVD 358 Query: 304 AHELMATYGWKTVDQA-ETYTKG-ADRIRLG 332 + A G T TY+ A+ + Sbjct: 359 PTTVAAMLGHSTPQTTLTTYSHYFAESKKRA 389 >gi|145629633|ref|ZP_01785430.1| tyrosine recombinase [Haemophilus influenzae 22.1-21] gi|144978144|gb|EDJ87917.1| tyrosine recombinase [Haemophilus influenzae 22.1-21] Length = 295 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 38/260 (14%), Positives = 88/260 (33%), Gaps = 21/260 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITT------KHIRSGVESRKHTPSSAIQFLT 138 ++ ++ +++ D I+ D T + I + + + S L+ Sbjct: 16 RQMSPHTITNYQHQLDATIKILAQQDIHSWTQVTPSVVRFILAESKKQGLKEKSLALRLS 75 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS---FWSEGSQPRLA 195 ++R + V+Q + +NP + PK+ + E +Q+ + + R Sbjct: 76 ALRRFLSFLVQQGELKVNPATGISAPKQGKHLPKNMDGEQVQRLLANDSKEPIDIRDRAI 135 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------ELPDGFMKLLA 246 E + SGLR S+ + + + ++ G V + + Sbjct: 136 LELMYSSGLRLSELQGLDLNSINTRVREVRVIGKGNKERVVPFGRYASHAIQEWLKVRAL 195 Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATA 304 P E F++ +++ + + G+N + H +R AT +A + Sbjct: 196 FNP-KDEALFVSQLGNRISHRAIQKRLETWGIRQGLNNHLNPHKLRHSFATHMLEASSDL 254 Query: 305 HELMATYGWKTVDQAETYTK 324 + G + + YT Sbjct: 255 RAVQELLGHSNLSTTQIYTH 274 >gi|113461442|ref|YP_719511.1| site-specific tyrosine recombinase XerC [Haemophilus somnus 129PT] gi|112823485|gb|ABI25574.1| tyrosine recombinase XerC subunit [Haemophilus somnus 129PT] Length = 291 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 36/260 (13%), Positives = 84/260 (32%), Gaps = 21/260 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITT------KHIRSGVESRKHTPSSAIQFLT 138 L+ + I+++ ++I+ D + + + + S L+ Sbjct: 12 RQLSPYTLINYQRQLEKIVVILQQNDIQSWQQVTPSVVRFVLAQSRKEGLHERSLALRLS 71 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF---KSFWSEGSQPRLA 195 ++R + V Q + +N + + PK+ + E +QQ +S + + Sbjct: 72 ALRQFLNYLVVQGELKVNSAVGISAPKQSKYLPKNMDMEQVQQLLTNESKEPIDLRDKAM 131 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------ELPDGFMKLLA 246 E + SGLR S+ + + ++ G + + L Sbjct: 132 MELMYSSGLRLSELQSLNLNSINIRSREVRVIGKGNKERILPFGRYASQAIQQWLKVRLL 191 Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATA 304 P E F++ +++ + + G+N H +R AT + + Sbjct: 192 FNP-KDEALFVSQLGNRISHRSIQKRMETWGIRQGLNGHLNPHKLRHSFATHMLENSSDL 250 Query: 305 HELMATYGWKTVDQAETYTK 324 + G + + YT Sbjct: 251 RAVQELLGHSNLSTTQIYTH 270 >gi|302858546|gb|ADL71292.1| gp32 [Mycobacterium phage Eagle] Length = 373 Score = 107 bits (267), Expect = 3e-21, Method: Composition-based stats. Identities = 61/354 (17%), Positives = 127/354 (35%), Gaps = 38/354 (10%) Query: 24 YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP--RKKPTTLKWL-ISEY-R 79 Y +R P +++ A + P R + + + + EY R Sbjct: 23 YVCPLDDKRYNAPTTYDNRMDAEAWLAKEKRLIENGEWTPPSERLRKAKVSAITVEEYTR 82 Query: 80 KSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESR-KHTPSSAIQFL 137 K LA ++ +E++ +I G+ ++T +R+ K P++ Sbjct: 83 KWLSERDLAPGTKNLYETHAAKRIYPALGETPVAEMTPAVVRAWWAGMGKQYPTARRHAY 142 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFE 197 +R + AV + ++ NPC +E+ + + E++++ + R+A Sbjct: 143 NVLRAVMNTAVEDKLLSENPCR-IEQKAAAERDVEALSVEELEKVAA--EVHEHYRIAVY 199 Query: 198 FLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTII----------------TVELPD 239 L ++ LR + + + ++ + ++ + V +P Sbjct: 200 ILAWTSLRFGELIELRRKDIMDDGETMHFRVRRGAARVGQKIVVGETKTVRSKRPVTVPP 259 Query: 240 GFMKLLA--------MTPIGKETFFINNDKQKMNATQFSIWFKA-KATKAGVNKSAHGVR 290 +++ M + KQ++ F+ K A + H +R Sbjct: 260 HVAEMVREHMKDRTKMNKGPEALLVTTTQKQRLTKAAFTRSLKKGYAKIGRTDLRVHDLR 319 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344 AT +A AGAT ELM G T A Y + A R I+ ++R+S++ Sbjct: 320 AVGATYAAQAGATTKELMVRLGHTTPRMAMKY-QMASEAR-DIEIAKRMSALAT 371 >gi|196232913|ref|ZP_03131763.1| integrase family protein [Chthoniobacter flavus Ellin428] gi|196223112|gb|EDY17632.1| integrase family protein [Chthoniobacter flavus Ellin428] Length = 298 Score = 107 bits (267), Expect = 3e-21, Method: Composition-based stats. Identities = 38/261 (14%), Positives = 86/261 (32%), Gaps = 21/261 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV---ESRKHTPSSAIQFLTSMR 141 + + + I++ + + ++++T H R + R + ++R Sbjct: 21 RNASPRTLINYRHALAEFRQVPNLPAWKELTADHFRRYLFECSKRGIARPTIRLHFAALR 80 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK---------SFWSEGSQP 192 +K+ + + NP V+ PK + + T + + + + Sbjct: 81 TFYKFLTERHGLKENPLKEVQLPKLEKKLPLVLTTKQIDELLSAPLRIEKSAKAPVWMPA 140 Query: 193 R--LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-----ELPDGFMKLL 245 R E SGLR ++ V ++ S++ G V K Sbjct: 141 RDAAILELFYSSGLRLAELVALDVANVDIYSESVRVLGKGRKERVVPVGAPALTAIQKYR 200 Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGAT 303 + F++ ++++ A + + + S H +R AT DAGA Sbjct: 201 QEANVHAGPLFLSKVRRRLTAANVWLVIRRYLPHTSIPLKVSPHKLRHSFATHLLDAGAD 260 Query: 304 AHELMATYGWKTVDQAETYTK 324 + + G ++ + YT Sbjct: 261 LRSVQSLLGHASLSTTQIYTH 281 >gi|152992017|ref|YP_001357738.1| site-specific DNA tyrosine recombinase XerD [Sulfurovum sp. NBC37-1] gi|151423878|dbj|BAF71381.1| site-specific DNA tyrosine recombinase XerD [Sulfurovum sp. NBC37-1] Length = 271 Score = 107 bits (267), Expect = 3e-21, Method: Composition-based stats. Identities = 35/252 (13%), Positives = 79/252 (31%), Gaps = 17/252 (6%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLF 144 +L + S+ Q+ K+ T + + + ++ + + L+S+ F Sbjct: 16 KALDALTISSYLGDLRQLEEAV-QKPLTKLDTTDVLKFLSTFENK-RTLNRKLSSINTFF 73 Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----QQFKSFWSEGSQPRLAFEFLL 200 + Q + + + K + + E++ + G + FL Sbjct: 74 HFCHLQNFTHE--KIRIPMAKVPKNLPKYLSPEEIMEGISLIDRSSTIGLRDYALILFLY 131 Query: 201 YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD----GFMKLLAMTPIGKETFF 256 SG R S++ A + I+ K V L L + + Sbjct: 132 ASGCRISEALNAQRSDILEGWLKIRFAKGEKERVVPLAPIAIEAVEAYLQAQDMSSSYLW 191 Query: 257 INNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTV 316 +N ++++ K + S H +R A+ GA + G ++ Sbjct: 192 LNYRAEQLSRISAYKIVKKY-----LGVSPHVLRHSFASSLIIGGADLRVVQELLGHSSL 246 Query: 317 DQAETYTKGADR 328 + + YT + Sbjct: 247 ETTQIYTHIQKQ 258 >gi|300727851|ref|ZP_07061231.1| phage integrase family protein [Prevotella bryantii B14] gi|299774899|gb|EFI71511.1| phage integrase family protein [Prevotella bryantii B14] Length = 405 Score = 107 bits (267), Expect = 3e-21, Method: Composition-based stats. Identities = 45/281 (16%), Positives = 92/281 (32%), Gaps = 23/281 (8%) Query: 69 TTLKWL--ISEYRK-----SAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121 T Y + S + + F+ + D + + K Sbjct: 112 GTWGNWRSCLRYLEAYCDESTTFSEITPEWVKGFKDFLDNVEKD-------SCKRKDREK 164 Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 + +S + ++ A + + +NP V+ K+ + E++ + Sbjct: 165 VSVFNGLSLNSKHSYFNKLKACLNAAFEEHIIVVNPLRGVKGFKQDEVAREHLSWEEVVK 224 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NN--IFSIKTQKTGTIITVEL 237 + + AF F ++GLR SD R +Q + K +KTG +++ Sbjct: 225 LDATPCRYPVLKNAFLFSCFTGLRKSDIERLTWGEVQKFDGFTRIVWKQKKTGGQEYLDI 284 Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSAT 295 P+ +K L +T K +N S+ + A +NK H R A Sbjct: 285 PEQAVKYLGTPQEEPDTPV---FKGFLNGALLSLELRRWMLAASINKDITYHCSRHTFAV 341 Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336 + + GA + + G + + + Y + D + Sbjct: 342 LMLNFGADIYTVSKMLGHREIATTQIYARVLDEKKRAAIML 382 >gi|255022087|ref|ZP_05294091.1| prophage integrase [Acidithiobacillus caldus ATCC 51756] gi|254968445|gb|EET26003.1| prophage integrase [Acidithiobacillus caldus ATCC 51756] Length = 341 Score = 107 bits (267), Expect = 3e-21, Method: Composition-based stats. Identities = 46/317 (14%), Positives = 97/317 (30%), Gaps = 20/317 (6%) Query: 17 RHGKIIY--YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74 + GK + + R R + L ++ + T Sbjct: 4 KRGKTWWVDFVDASGQRVRRSAGTTDKAAAQELHDQLRAEAWRQSKLG--EAPARTWDEA 61 Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH--TPSS 132 + + + E + + + I+ + IR +E +K + S+ Sbjct: 62 ALRWLEEKT----HKATLEKDEQQLEWLHPYLSGKKLKDISWETIRGILEIKKKETSAST 117 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192 A +L +R + + A + ++ + P K + T+E+ + Sbjct: 118 ANHYLALIRGILRRANKWGWLEVLPSFEPYPVKNQRLRW--LTQEEAARLLQELPPHLAS 175 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQKTGTIITVELPDGFMKLLAMT 248 F L +GLR S+ + K I V L + +++L Sbjct: 176 MAEFSLL--TGLRQSNVTGLEWSQVDMQRRCAWIHPDQAKARKPIPVSLNEQAVQVLLRQ 233 Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHEL 307 + + + W + +AG+ + + HG+R A+ AG L Sbjct: 234 IGKHPRYVFTYKGRPVTQVTTKAW-RNALQRAGIEDFTWHGLRHTWASWHVQAGTPLLVL 292 Query: 308 MATYGWKTVDQAETYTK 324 GW ++D + Y Sbjct: 293 QQMGGWASLDMVQRYAH 309 >gi|188588813|ref|YP_001921530.1| phage integrase family protein [Clostridium botulinum E3 str. Alaska E43] gi|188499094|gb|ACD52230.1| phage integrase family protein [Clostridium botulinum E3 str. Alaska E43] Length = 382 Score = 107 bits (267), Expect = 3e-21, Method: Composition-based stats. Identities = 40/352 (11%), Positives = 111/352 (31%), Gaps = 43/352 (12%) Query: 15 RTRHGKIIYYFRKGH--GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72 R + + YYF G G+R R+ T A + + + + Sbjct: 6 RKKGNRWYYYFEAGRVNGKRKRIERKGGDTKKEAQQALRMALNEFNNTGSYVNETNMSFS 65 Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131 + + + N++ +++S+ + + G + +++ ++ + + Sbjct: 66 DFLDYWFDEYVMKNCKYNTQQTYKSFININLKPNLGIYKIKQLNYAALQEFLNKQYAHGY 125 Query: 132 SAIQFLTSMRVLFKWAVRQ-----EYVAINPCLSVERPKRKT--EGIRPWTKEDMQQFKS 184 S L +R + ++ +++ +NP ++ P+ + + E+ + Sbjct: 126 SKN-TLARLRSIISHSLEMAVSPYQFIKVNPAKNLTLPRFDNIAKENIVISIENFNKIIG 184 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK---------------- 228 + G+ + + +G+R + C + +I+ +K Sbjct: 185 RFPCGTSFYIPLQIAFNTGMRVGEVCGLTWDCVDFEKKTIRIEKILIFKTKQGYEFSTPK 244 Query: 229 -TGTIITVELPDGFMKLLAMTPI--------------GKETFFINNDKQKMNATQFSIWF 273 G+I T+ + D + +L + + T Sbjct: 245 TKGSIRTISIGDTLINILKTHKNWQEENKKNYGSYYNDNNFVCTKENGSFVTMTSLRYLS 304 Query: 274 KAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324 + + + + H +R AT+ + GA ++ G + Y+ Sbjct: 305 RIINMELQIKFNFHSLRHTHATMLLEGGANIKDIQDRLGHSKFSTTMDLYSH 356 >gi|241664436|ref|YP_002982796.1| integrase family protein [Ralstonia pickettii 12D] gi|240866463|gb|ACS64124.1| integrase family protein [Ralstonia pickettii 12D] Length = 351 Score = 107 bits (267), Expect = 3e-21, Method: Composition-based stats. Identities = 47/284 (16%), Positives = 101/284 (35%), Gaps = 21/284 (7%) Query: 60 YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119 Y++ + T+ + Y + ++ S + G + ++ + Sbjct: 50 YLSRGPSEKLTVAGALRRYMEEVSVTK-KPTTQRSERFTAQHLEAFFGKYSMAAVSADLV 108 Query: 120 RSGVESRKHTPSSAIQF---LTSMRVLFKWAVRQEY---VAINPCLSVERPKRKTEGIRP 173 + R S L + LF+ A+ QE+ + NP ++ +P T R Sbjct: 109 AKYRDVRLAAGKSNNTVRIELAMLGHLFRTAI-QEWSIGLTFNPVANIRKPSPGTGRDRR 167 Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLY--SGLRCSDSCRAGVQHLQNNI--FSIKTQKT 229 + ++ + + S S P L + L +G+R S+ + N +++ K Sbjct: 168 LSLDEQARLFAAVSAHSNPMLGWIVGLAVETGMRSSEIATLRRSQVDLNRRVVNLRDTKN 227 Query: 230 GTIITVELPDGFMKLLAMT------PIGKETFFINNDKQ--KMNATQFSIWFKAKATKAG 281 G+ V L +L + P+ + F + K F + + G Sbjct: 228 GSARVVPLTRAAADVLRLALSNPIRPLDSDLVFFGEPGRDGKRRPYVFQKLWTSIVRDIG 287 Query: 282 V-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 + + H +R + + +AG + E+ A G K++ + YT Sbjct: 288 LADLHFHDLRHEAVSRLVEAGLSDQEVAAISGHKSMQMLKRYTH 331 >gi|260885407|ref|ZP_05896922.1| integrase/recombinase XerC [Prevotella tannerae ATCC 51259] gi|260852293|gb|EEX72162.1| integrase/recombinase XerC [Prevotella tannerae ATCC 51259] Length = 299 Score = 107 bits (267), Expect = 3e-21, Method: Composition-based stats. Identities = 36/271 (13%), Positives = 86/271 (31%), Gaps = 25/271 (9%) Query: 77 EYRKSAHWGSLAVNSRISFESYFDQI----IRKSGDFDYRKITTKHIRSGVESRKHTP-- 130 Y S + + + + + I + ++ I +R + R Sbjct: 14 SYLASD--KGYSPLTIMKYRDVLEGFEAFYISQEATLTWQTIDADLVRRWIVWRMDDGIV 71 Query: 131 -SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF--KSFWS 187 + + L+++R +++ + + +P V+ PK + +M + K+ + Sbjct: 72 GRTVRRDLSALRSFYRYLLVLGLIEKDPMCFVKNPKSAQPLPAFVRQSEMDRLFDKTHFP 131 Query: 188 E---GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMK 243 E G + L +G+R ++ + + ++ T K + + Sbjct: 132 ETFEGQRDYLILLTFYSTGVRRAELLAMQWVDIDLSRCEVRVTGKRNKQRIIPFGAELAE 191 Query: 244 LLAMTPIGKE--------TFFINNDKQKMNATQFSIWFKAK-ATKAGVNK-SAHGVRKFS 293 + FI ++ + + TQ + + K S H +R Sbjct: 192 AFQAYYAARMDLVKHMSGPLFIQSNGRPLQPTQVGRIVHDYLSLVTNIKKRSPHVLRHSF 251 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTK 324 AT + GA + G ++ YT Sbjct: 252 ATAMLNNGADLMAVKELLGHSNLNTTAIYTH 282 >gi|184201180|ref|YP_001855387.1| tyrosine recombinase XerD [Kocuria rhizophila DC2201] gi|183581410|dbj|BAG29881.1| tyrosine recombinase XerD [Kocuria rhizophila DC2201] Length = 304 Score = 107 bits (267), Expect = 3e-21, Method: Composition-based stats. Identities = 43/268 (16%), Positives = 83/268 (30%), Gaps = 35/268 (13%) Query: 90 NSRISFESYFDQIIRKSGDFDY-RKITTKHIRSGVESRKH--------TPSSAIQFLTSM 140 R Y + + R IT H+R+ V + + S+ + L ++ Sbjct: 21 AYRRDLARYLQHLTATAAHVRVPRDITADHVRAFVRRIREGDAAHPALSARSSARVLAAV 80 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAF 196 R + V + V + V P + +++ + G + R Sbjct: 81 RGAHAFWVTESSVDTDVASRVSPPMPPQRLPKAIGVTEVENLLAAPDPDTPAGLRARAFL 140 Query: 197 EFLLYSGLRCSDSCRAGVQHL-----QNNIFSIKTQKTGTIITVEL-----------PDG 240 E L +G R S++ V L ++ T K V + Sbjct: 141 ELLYATGARISEAVALDVDDLAGLHDEDLALIRVTGKGAKQRLVPVGSFAVAALDRYLIR 200 Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK----SAHGVRKFSATI 296 LA G F+N +++ K A +++ + H +R AT Sbjct: 201 ARPELARHGRGSPAVFLNARGTRISRQTAWNMVKDAART--IHQEERITPHTLRHSFATH 258 Query: 297 SADAGATAHELMATYGWKTVDQAETYTK 324 + GA + G ++ + YT+ Sbjct: 259 LLEGGADLRVVQELLGHASLATTQIYTR 286 >gi|169795024|ref|YP_001712817.1| site-specific tyrosine recombinase [Acinetobacter baumannii AYE] gi|294858572|ref|ZP_06796341.1| site-specific tyrosine recombinase [Acinetobacter sp. 6013150] gi|301345401|ref|ZP_07226142.1| site-specific tyrosine recombinase [Acinetobacter baumannii AB056] gi|301511585|ref|ZP_07236822.1| site-specific tyrosine recombinase [Acinetobacter baumannii AB058] gi|169147951|emb|CAM85814.1| site-specific tyrosine recombinase [Acinetobacter baumannii AYE] Length = 308 Score = 107 bits (267), Expect = 3e-21, Method: Composition-based stats. Identities = 49/279 (17%), Positives = 98/279 (35%), Gaps = 27/279 (9%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGVESR---- 126 L+S + K + + ++ ++E + + D R + +R + R Sbjct: 10 QLLSMWLKERKIQNQSEHTITAYERDVRSFLEFCELKKVDLRNVEASDLREYLAQRVEQD 69 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + + SS + LTS+R KWA + +Y+ INP + ++ E + Q Sbjct: 70 QLSSSSMQRHLTSIRQFMKWAEQGKYLEINPTDDFKLKRQPRPLPGMIDIETVNQILDQP 129 Query: 187 SEG--------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV--- 235 + + E L SGLR ++ ++ + N ++ G + Sbjct: 130 MPEKPIDQQLWLRDKAMLELLYSSGLRLAELQGLTIKDIDFNRQLVRITGKGNKTRIVPF 189 Query: 236 --ELPDGFMKLLAMTPIGKETF------FINNDKQKMNATQFSIWFKAKATKAGV--NKS 285 + + + L + I K F FI+ + Q K +A +AGV + Sbjct: 190 GKKAKESLLNWLKIYNIWKGHFDQNASVFISQRGGALTPRQIEKRVKLQAQRAGVNVDLH 249 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R A+ + + G + + YT Sbjct: 250 PHLLRHCFASHMLSSSGDLRSVQEMLGHSNLSTTQIYTH 288 >gi|329943079|ref|ZP_08291853.1| phage integrase, N-terminal SAM-like domain protein [Chlamydophila psittaci Cal10] gi|313848235|emb|CBY17236.1| putative site-specific recombinase [Chlamydophila psittaci RD1] gi|328814626|gb|EGF84616.1| phage integrase, N-terminal SAM-like domain protein [Chlamydophila psittaci Cal10] Length = 299 Score = 107 bits (267), Expect = 3e-21, Method: Composition-based stats. Identities = 40/264 (15%), Positives = 86/264 (32%), Gaps = 25/264 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH---IRSGVESRKHTPSSAIQFLTSMR 141 L+ NS ++ ++ + +I+ + RK ++ + L +++ Sbjct: 22 RGLSCNSISAYIQDITLFLKINAITSIAEISQDSVHLFVDQLHKRKEAEATLARRLIALK 81 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS-------EGSQPRL 194 V F++ + + P +E PK T +++ + ++ Sbjct: 82 VFFRFLKEAKLLEHPP--LIEHPKIWKRLPTVLTPKEVDTLLAIPKKTTTSSMISTRDTA 139 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD-----------GFMK 243 L +G+R S+ C + + ++ + T K V L F + Sbjct: 140 ILHTLYSTGIRVSELCGLHIGDVSDDFLRV-TGKGSKTRLVPLGKLASKAIDAYLCPFRE 198 Query: 244 LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGA 302 L + F++ +K+ + A + + S H +R AT D A Sbjct: 199 NLQKKQPEEHHLFLSIRGRKLERSCVWKRIHYYAKQVTHKRVSPHSLRHAFATHLLDNKA 258 Query: 303 TAHELMATYGWKTVDQAETYTKGA 326 + G + E YT A Sbjct: 259 DLRVIQEMLGHARIASTEVYTHVA 282 >gi|254418058|ref|ZP_05031782.1| site-specific recombinase, phage integrase family protein [Brevundimonas sp. BAL3] gi|196184235|gb|EDX79211.1| site-specific recombinase, phage integrase family protein [Brevundimonas sp. BAL3] Length = 306 Score = 107 bits (267), Expect = 3e-21, Method: Composition-based stats. Identities = 41/255 (16%), Positives = 92/255 (36%), Gaps = 36/255 (14%) Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 + + R + ++A + +S R +++A+ + + +P ++ PK+ + +++++ Sbjct: 56 ADLSRRGLSAATAARRRSSARQFYRFALAEGWRTDDPSRRLDAPKQGRPLPKLLSRDEID 115 Query: 181 QFKSFWSE-----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIIT 234 + + + G + E SGLR S+ V ++ + + I K G Sbjct: 116 RLLAAAAARDAAGGLRLVALVEMAYASGLRVSELLGLKVDAVRRDPAYLIVRGKGGKERL 175 Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQK------------------MNATQFSIWFKAK 276 L + + ++ D +K + +F+ Sbjct: 176 APLNTAAREAIKAWLTARDARLKGKDGRKPEAPDSPWLFPSSGRTGHLTPRRFAQLLDEA 235 Query: 277 ATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 A AG++ S H +R AT + GA + G + + YT A Sbjct: 236 APVAGIDPARVSPHVLRHAFATHLLEGGADLRVVQTLLGHADIATTQIYTHVA------- 288 Query: 334 KNSRRISSVVDSDDP 348 + R++ VV + P Sbjct: 289 --TDRLAQVVQQNHP 301 >gi|257876703|ref|ZP_05656356.1| site-specific recombinase [Enterococcus casseliflavus EC20] gi|257810869|gb|EEV39689.1| site-specific recombinase [Enterococcus casseliflavus EC20] Length = 299 Score = 107 bits (267), Expect = 3e-21, Method: Composition-based stats. Identities = 44/281 (15%), Positives = 103/281 (36%), Gaps = 36/281 (12%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIR---SGVE 124 ++LI E + ++ +++ + +++SG+ D + + +R S + Sbjct: 11 FRYLIVE-------RGYSEKTKKAYQEDMNDFFHFLKESGNEDPLAVEYRDVRVYLSYLT 63 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 R+++ +S + + S+R +++ + E V NP + K+ + R + +++M Sbjct: 64 ERRYSRNSISRKMASLRSFYQFLTKHEIVKENPFAYIHLKKKNAKLPRFFYEKEMDALFQ 123 Query: 185 F----WSEGSQPRLAFEFLLYSGLRCSDS--CRAGVQHLQNNIFSIKTQKTGTI------ 232 + + E L SGLR S+ G ++ + I + Sbjct: 124 SVAGDEPLQQRNQALLEVLYGSGLRVSECSSLTLGAIDWESGVLLIHGKGNKDRYVPFGS 183 Query: 233 -----ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ----FSIWFKAKATKAGVN 283 + L G +L+ E F+N+ + AT + + + + ++ Sbjct: 184 YAQAAVKRYLSSGRKQLMEKQNKEHEVLFVNHLGDGITATGIEYVLNQIIRKSSLDSKIH 243 Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R AT + GA + G + + Y Sbjct: 244 --PHMLRHTFATHLLNNGADMRTVQELLGHANLSTTQIYAH 282 >gi|240851325|ref|YP_002972728.1| integrase /recombinase XerC [Bartonella grahamii as4aup] gi|240268448|gb|ACS52036.1| integrase /recombinase XerC [Bartonella grahamii as4aup] Length = 322 Score = 107 bits (267), Expect = 3e-21, Method: Composition-based stats. Identities = 34/269 (12%), Positives = 78/269 (28%), Gaps = 29/269 (10%) Query: 85 GSLAVNSRISFES----YFDQIIRKSGDFD----YRKITTKHIRSGVESRKH---TPSSA 133 ++ + ++E + + + + +R+ + R+ + S Sbjct: 37 RRMSAQTMQAYERDTRQFLSFLCQHLSHTPTLTDLAHLRISDLRAYLAYRRTNNVSARSL 96 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE-------DMQQFKSFW 186 + + +R FK+ R+ V + + PK +P + Q ++ Sbjct: 97 SRGVAGIRSFFKYLSREGIVNVPAAQLIRSPKHPKSLPKPLAIKSALHIVKQENQLENEP 156 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQKTGTIITVELP----DG 240 ++ L G+R S++ + + T K G V L + Sbjct: 157 WISARNAAVLMLLYGCGMRISEALSLTPEQFSDPEKTSLFITGKGGKTRLVPLIKVVYEA 216 Query: 241 FMKLLAMTP---IGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSAT 295 L P + + F + + G+ + H +R AT Sbjct: 217 VQNYLKCCPYPLVNNQPIFRGARGGPLQPAIIQKTVRNLRASLGLPETATPHTLRHSFAT 276 Query: 296 ISADAGATAHELMATYGWKTVDQAETYTK 324 G + G ++ + YT Sbjct: 277 HLLSRGGDLRTIQELLGHASLSTTQIYTH 305 >gi|189501600|ref|YP_001957317.1| integrase family protein [Candidatus Amoebophilus asiaticus 5a2] gi|189497041|gb|ACE05588.1| integrase family protein [Candidatus Amoebophilus asiaticus 5a2] Length = 292 Score = 107 bits (267), Expect = 3e-21, Method: Composition-based stats. Identities = 37/256 (14%), Positives = 83/256 (32%), Gaps = 23/256 (8%) Query: 90 NSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP---SSAIQFLTSMRVLFKW 146 + F + + T+K +RS + S + + S++ + + Sbjct: 22 AYQTDLNQLFSYLQTNFQIAELSHATSKLLRSWIMELAKQGLNNRSINRKIASLKAFYGF 81 Query: 147 AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS-----EGSQPRLAFEFLLY 201 ++EY+ + + K K ++++ EG + RL E L Sbjct: 82 LYKKEYIPSDITTQLTGLKVKKGLPIFLREQELLHLLDEHPFTDDFEGWRARLILELLYS 141 Query: 202 SGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET----- 254 +G+R + + + + + K + LP + ++ + T Sbjct: 142 TGIRLQELINLQDRDINFYDRTIRV-LGKRNKERILPLPKHILPIIEGYLQQRNTIIANA 200 Query: 255 ---FFINNDKQKMNATQFSIWFKAKAT---KAGVNKSAHGVRKFSATISADAGATAHELM 308 FF+ + + K+ +A + S H +R AT + GA + Sbjct: 201 PAHFFVTTNNKPCYPMLIYKLVKSYLASYTQADRH-SPHILRHTFATHLLNRGADLQAIK 259 Query: 309 ATYGWKTVDQAETYTK 324 G ++ + YT Sbjct: 260 ELLGHTSLAATQVYTH 275 >gi|294054714|ref|YP_003548372.1| integrase family protein [Coraliomargarita akajimensis DSM 45221] gi|293614047|gb|ADE54202.1| integrase family protein [Coraliomargarita akajimensis DSM 45221] Length = 387 Score = 107 bits (267), Expect = 3e-21, Method: Composition-based stats. Identities = 42/282 (14%), Positives = 81/282 (28%), Gaps = 37/282 (13%) Query: 88 AVNSRISFESYFDQIIRKSGDFDYRKI------TTKHIRSGVESRKHTPSSAIQFLTSMR 141 A + + + + + + I K R + +P + + ++R Sbjct: 98 APRTHERYNAIVNAFLDSLHERKKVSIGYLNAKDIKKFRDLQLAAGKSPRTCNLEVKTLR 157 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY 201 A RQ V N ++E + +T ED+++ S A + Sbjct: 158 AALNAARRQGLVTTNAAEALEMLPTEKSKKAVFTAEDIEKILEVASADWSG--ATLVGFF 215 Query: 202 SGLRCSDSCRAGVQ--HLQNNIFSIKTQKTG-----TIITVELPDGFMKLLAMTPIGKE- 253 +G R D + L + + +KT T + + + + L P + Sbjct: 216 TGARLGDVANLTWESVDLSAKLINFVPEKTSHSEHPTKVVIPIAKTLLDYLMTLPSSDDP 275 Query: 254 --TFFINNDKQKMNA-TQFSIWFKAKATKAGV-----------------NKSAHGVRKFS 293 F + + S F A + S H +R Sbjct: 276 NAYLFPSLAGRNTGGHNGLSRQFLHILESAKLVSAARVKKKGEKGRIQSALSFHSLRHSC 335 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYT-KGADRIRLGIK 334 + A+ G G + + YT DR+R I Sbjct: 336 TSAMANGGIPVEVRQLITGHASAEMNAIYTHHELDRLRKAID 377 >gi|307265141|ref|ZP_07546700.1| tyrosine recombinase XerD [Thermoanaerobacter wiegelii Rt8.B1] gi|306919763|gb|EFN49978.1| tyrosine recombinase XerD [Thermoanaerobacter wiegelii Rt8.B1] Length = 290 Score = 107 bits (267), Expect = 3e-21, Method: Composition-based stats. Identities = 33/243 (13%), Positives = 89/243 (36%), Gaps = 17/243 (6%) Query: 91 SRISFESYFDQIIRKSGDF-----DYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFK 145 + S+ +Q + + + +K T + ++ + + ++ + L+S++ + Sbjct: 23 TLESYNRDINQFLNYLEEIGINCYNVKKSTILNYLYYLKKKGKSQATVSRNLSSLKAFYH 82 Query: 146 WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAFEFLLY 201 + ++ + +P + PK + + T E + S +G + + E L Sbjct: 83 YLFMKKKIEEDPTYMINTPKVEKKQPTTLTVEQVDMLLSLDFGDDEKGLRDKALIELLYA 142 Query: 202 SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII------TVELPDGFMKLLAMTPIGKETF 255 +GL+ S+ ++ + + + + + +E +++ G+ T Sbjct: 143 TGLKVSEVISLKLEDVNLSYGYVVIRSNKERVIPIGSHAIEALKNYIEKGRKAKNGENTL 202 Query: 256 FINNDKQKMNATQFSIWFKAKATKA--GVNKSAHGVRKFSATISADAGATAHELMATYGW 313 F+N QK+ + K G + + +R+ A GA + G+ Sbjct: 203 FLNLRGQKLTRQGCWKIIREYTDKINPGFPVTPNTLRQSFAQHMLQNGADIRAVQEMLGY 262 Query: 314 KTV 316 +T Sbjct: 263 QTD 265 >gi|269925988|ref|YP_003322611.1| integrase family protein [Thermobaculum terrenum ATCC BAA-798] gi|269789648|gb|ACZ41789.1| integrase family protein [Thermobaculum terrenum ATCC BAA-798] Length = 316 Score = 107 bits (267), Expect = 3e-21, Method: Composition-based stats. Identities = 36/277 (12%), Positives = 93/277 (33%), Gaps = 37/277 (13%) Query: 86 SLAVNSRISFESYFDQIIRKSG-----DFDYRKITTKHIRSGVE----SRKHTPSSAIQF 136 L+ S +++ ++ + + +++ ++ + +++ Sbjct: 27 GLSPASVRTYQQVLYALVDWLELRLQSKAHVSNLDKQSVKAWQRYLVVEKQLDDDTYVKY 86 Query: 137 LTSMRVLFKWAVRQEY--VAINPCLSVERPKRKTE--GIRPWTKEDMQQFKSFWSE---- 188 ++++R + ++ + + ++ PK + I+ + +D++ Sbjct: 87 ISALRSFVNYLHDEDLTSLTRD---DIKLPKSHMDVSSIKALSVDDVRALLMAPDPSTPW 143 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHL------QNNIFSIKTQKTGTIITVELPDG-- 240 G + R L +G+R ++ C L ++ I + G V D Sbjct: 144 GKRDRALLALLYCTGMRIAELCSLNRDQLPLEHLCEDEILEVSIIGKGRKPRVVFVDAVA 203 Query: 241 ---FMKLLAMTPIGKETFFINNDKQ----KMNATQFSIWFKAKATKAGVNK--SAHGVRK 291 + L + F++ ++ + K A KAG+ + H +R Sbjct: 204 QRLLKEYLQLRTDENPALFVSFKGPTAEDRLTPRAIQMSIKKYAKKAGLKTIPTPHTMRH 263 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 A GA + A G ++ + YT+ DR Sbjct: 264 TFAVHKLQGGADTRIVQAFLGHSSLATTQRYTRVTDR 300 >gi|254448959|ref|ZP_05062414.1| tyrosine recombinase XerC [gamma proteobacterium HTCC5015] gi|198261496|gb|EDY85786.1| tyrosine recombinase XerC [gamma proteobacterium HTCC5015] Length = 301 Score = 107 bits (267), Expect = 3e-21, Method: Composition-based stats. Identities = 35/278 (12%), Positives = 83/278 (29%), Gaps = 28/278 (10%) Query: 75 ISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFDYR-----KITTKHIRSGVESRKH 128 + Y + + ++ ++ + G + + Sbjct: 1 MQRYLQHLMAERRYSSHTLDNYRRDLKALCDYIGPLPIDWQQVIGQDVRDFAAASHRGGL 60 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 S + L++ R F++ +R+ + NP V P+ + + + +Q S+ Sbjct: 61 ASRSIARRLSAARGFFQFLIREGQLQANPAQGVPAPRGEKKLPEVLDADRLQHLLDAPSQ 120 Query: 189 GS-------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT------- 234 + R E +GLR ++ L++ ++ G+ Sbjct: 121 RDDANSADVRERAILELFYSTGLRLAELAALDCADLRHQERDLEVVGKGSKARHVMVGGK 180 Query: 235 --VELPDGFMK----LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SA 286 L D L ++ FIN +++ A + G+++ Sbjct: 181 ARESLDDWLAVRSQWLEGSGAKREDALFINQRGGRLSVRGIQQRIADYAQRRGLDRNLHP 240 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R AT ++ + G + + YT Sbjct: 241 HMLRHSFATHLLESSGDLRAVQKLLGHANIGTTQIYTH 278 >gi|184159192|ref|YP_001847531.1| site-specific recombinase XerC [Acinetobacter baumannii ACICU] gi|294840725|ref|ZP_06785408.1| site-specific tyrosine recombinase [Acinetobacter sp. 6014059] gi|183210786|gb|ACC58184.1| Site-specific recombinase XerC [Acinetobacter baumannii ACICU] Length = 308 Score = 107 bits (267), Expect = 3e-21, Method: Composition-based stats. Identities = 49/279 (17%), Positives = 98/279 (35%), Gaps = 27/279 (9%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGVESR---- 126 L+S + K + + ++ ++E + + D R + +R + R Sbjct: 10 QLLSMWLKERKIQNQSEHTITAYERDVKSFLEFCELKKVDLRNVEASDLREYLAQRVEQD 69 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + + SS + LTS+R KWA + +Y+ INP + ++ E + Q Sbjct: 70 QLSSSSMQRHLTSIRQFMKWAEQGKYLEINPTDDFKLKRQPRPLPGMIDIETVNQILDQP 129 Query: 187 SEG--------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV--- 235 + + E L SGLR ++ ++ + N ++ G + Sbjct: 130 MPEKPVDQQLWLRDKAMLELLYSSGLRLAELQGLTIKDIDFNRQLVRITGKGNKTRIVPF 189 Query: 236 --ELPDGFMKLLAMTPIGKETF------FINNDKQKMNATQFSIWFKAKATKAGV--NKS 285 + + + L + I K F FI+ + Q K +A +AGV + Sbjct: 190 GKKAKESLLNWLKIYNIWKGHFDQNASVFISQRGGALTPRQIEKRVKLQAQRAGVNVDLH 249 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R A+ + + G + + YT Sbjct: 250 PHLLRHCFASHMLSSSGDLRSVQEMLGHSNLSTTQIYTH 288 >gi|152984207|ref|YP_001349101.1| integrase [Pseudomonas aeruginosa PA7] gi|150959365|gb|ABR81390.1| integrase [Pseudomonas aeruginosa PA7] Length = 399 Score = 107 bits (267), Expect = 3e-21, Method: Composition-based stats. Identities = 56/327 (17%), Positives = 111/327 (33%), Gaps = 31/327 (9%) Query: 45 PAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-II 103 +++ + N+ RK P T+K + + +++ ++ D+ II Sbjct: 75 QEWLAEVRKGGDPSAAKNAARKAP-TMKEFCHTFMEDYSKQRNKPSTQRGYQGVIDRCII 133 Query: 104 RKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVA--INPCLSV 161 G + + + + ++ + + A + +R +F A NPC V Sbjct: 134 PIMGRMKVQDVKRPDVATLMKKLAYKQAEANRTFGVLRKMFNLAEVWGLRPDGTNPCRHV 193 Query: 162 ERPKRKTEGIRPWTKEDM----QQFKSFWSEGSQPR---LAFEFLLYSGLRCSDSCRAGV 214 + R +++ +Q +S +EG + LA R S+ C Sbjct: 194 PM-YPPGKETRLIVDDELVRIFRQLESLEAEGLENYVIPLAIRLQFEFAARRSEICPLEW 252 Query: 215 QHLQNN--IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFI----NNDKQKMN-AT 267 + KTG I+ + + +LL+ P + ++ N+ + M Sbjct: 253 DWIDLEKRRVVWPDSKTGG-ISKPMSEEAYRLLSTAPRREGCPYVLPSPNDPTRHMTHGE 311 Query: 268 QFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 + W + + HG+R + T A++G M G KTV Y D Sbjct: 312 HYGGWTRVLKAAGVPHVGTHGIRHRATTDIANSGVPTKVGMKLTGHKTVAMFMHYVHTED 371 Query: 328 R-----------IRLGIKNSRRISSVV 343 + RL I +RR + Sbjct: 372 KPVRDAAELVANRRLAITGARRTEEMA 398 >gi|46580167|ref|YP_010975.1| phage integrase family site specific recombinase [Desulfovibrio vulgaris str. Hildenborough] gi|46449584|gb|AAS96234.1| site-specific recombinase, phage integrase family [Desulfovibrio vulgaris str. Hildenborough] gi|311233841|gb|ADP86695.1| integrase family protein [Desulfovibrio vulgaris RCH1] Length = 373 Score = 107 bits (267), Expect = 3e-21, Method: Composition-based stats. Identities = 47/317 (14%), Positives = 93/317 (29%), Gaps = 19/317 (5%) Query: 25 FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT--TLKWLISEYRKSA 82 +R G + AY + + K + + + Y Sbjct: 34 YRHGGKKVWETIGRKSEGVNAAYAARVRAERVKEVEAGRFIARDEMPVFRDALERYLTVH 93 Query: 83 HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT---PSSAIQFLTS 139 G + + + + I GD +I HI S P + + Sbjct: 94 AKGKSSESHMRGYFEH--HIAPLFGDAKMDRIKPIHIEELKRSMAEKGRSPQTIRHAIAL 151 Query: 140 MRVLFKWAVRQE-YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP-RLAFE 197 +R +++ V Y +P VE PK +R T+ + S+ Sbjct: 152 VRQVYRKCVAWGIYTGTSPTDGVEMPKVDAARLRFLTEAEAASLLHALHRRSRQWHDIAY 211 Query: 198 FLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTI---ITVELPDGFMKLLAMTPIGK 252 LY+G+R + V H+ + + + K GT +T + + A + Sbjct: 212 LSLYTGMRLGEVLGLQVGHVNVADGVIDVMDAKAGTRAAYMTAGVKEILAARCAGRDAKE 271 Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGV-----NKSAHGVRKFSATISADAGATAHEL 307 F + + + GV H +R + A G + + Sbjct: 272 FVFVQRGGGRVRYISSVFSRVADELFNDGVTDARHKVVFHTLRHTFGSWLAQRGVPLYTI 331 Query: 308 MATYGWKTVDQAETYTK 324 G +++ + Y+K Sbjct: 332 AVLMGHSSLEMTKRYSK 348 >gi|317058175|ref|ZP_07922660.1| DNA integration/recombination/inversion protein [Fusobacterium sp. 3_1_5R] gi|313683851|gb|EFS20686.1| DNA integration/recombination/inversion protein [Fusobacterium sp. 3_1_5R] Length = 325 Score = 107 bits (267), Expect = 3e-21, Method: Composition-based stats. Identities = 46/315 (14%), Positives = 111/315 (35%), Gaps = 23/315 (7%) Query: 46 AYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK 105 + AL+ ++ T ++L ++ +L+ NS ++ ++ Sbjct: 14 QFSLALSKYNLVKKGKYEVVVSENTNEFLWKKFFIGKRIENLSENSLKVYKDNLERF-DS 72 Query: 106 SGDFDYRKITTKHIRSGVESRKHTPSSA-----IQFLTSMRVLFKWAVRQEYVAINPCLS 160 ++ +TT+ +R + + SS ++ F++ V + + NP Sbjct: 73 VIKKNFLDVTTEDVRFYIATVISKNSSVKETYLDNIRRFLKTFFQFLVDEGLIKTNPVTR 132 Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN 220 ++ + T P++ ++++ ++ S + E L+ + R + + + Sbjct: 133 IKPIRGNTSEKLPFSNMEIEKLRNACSS-CLEKAVIEILISTAFRRQELAEIKLSDIDFE 191 Query: 221 IFSIKTQKTGTIITVELPD-----GFMKLLAMTPIGKETFFINND---------KQKMNA 266 SI+T G + + ++ + K F + +A Sbjct: 192 KGSIRTIGKGKKLGYGFLNAKALLALIEYIEKERESKSVFLFIRGKNKRFREKAGEPYDA 251 Query: 267 TQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 + K KAGV H R+ +AT + D G ++ + + YT Sbjct: 252 SSLYALIKKIGKKAGVTHVHPHRFRRTAATKALDRGLGLEDVKELLRHEDIKTTLIYT-T 310 Query: 326 ADRIRLGIKNSRRIS 340 ++ RL K++R + Sbjct: 311 LNKDRLKDKHNRFLD 325 >gi|50914372|ref|YP_060344.1| DNA integration/recombination/invertion protein [Streptococcus pyogenes MGAS10394] gi|50903446|gb|AAT87161.1| DNA integration/recombination/invertion protein [Streptococcus pyogenes MGAS10394] Length = 374 Score = 107 bits (267), Expect = 3e-21, Method: Composition-based stats. Identities = 49/302 (16%), Positives = 94/302 (31%), Gaps = 27/302 (8%) Query: 48 MSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG 107 +A + ++ P+ T L ++ K + + I+ K Sbjct: 52 QAARETLISLQAELDKPKSS-MTFGALTDQWLKEYEKTVQGSTYLKTERNINKHILPKLD 110 Query: 108 DFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167 I I+ E + + L +R + AVR Y+ NP L + PK K Sbjct: 111 KVKIGDINPLLIQRLTEEWCNDLKYGGKILGLVRNILNLAVRYGYINNNPALPITPPKIK 170 Query: 168 TEG---IRPWTKEDMQQFKSFWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222 + +T + ++QF + F L ++G+R + L N Sbjct: 171 RKRKMNNNFYTLDQLKQFLELVEKTDNIEKIALFRLLAFTGIRKGELLALTWDDLNGNTL 230 Query: 223 SIKTQKTGTIITVEL------------------PDGFMKLLAMTPIGKETFFINNDKQKM 264 SI T T + +E+ + +L P F + M Sbjct: 231 SINKAVTRTQVGLEIDVTKTKSSDRLISLDDETLEILQELHETFPTSTLMF-QSESGGIM 289 Query: 265 NATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TY 322 + W + + + HG R A++ ++G + ++ G + Y Sbjct: 290 TPSLPRKWLLQIIKGTDLPQITIHGFRHTHASLLFESGLSLKQVQHRLGHGDLQTTMNVY 349 Query: 323 TK 324 T Sbjct: 350 TH 351 >gi|19746280|ref|NP_607416.1| integrase [Streptococcus pyogenes MGAS8232] gi|19748468|gb|AAL97915.1| integrase [Streptococcus pyogenes MGAS8232] Length = 362 Score = 107 bits (267), Expect = 3e-21, Method: Composition-based stats. Identities = 49/302 (16%), Positives = 94/302 (31%), Gaps = 27/302 (8%) Query: 48 MSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG 107 +A + ++ P+ T L ++ K + + I+ K Sbjct: 40 QAARETLISLQAELDKPKSS-MTFGALTDQWLKEYEKTVQGSTYLKTERNINKHILPKLD 98 Query: 108 DFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167 I I+ E + + L +R + AVR Y+ NP L + PK K Sbjct: 99 KVKIGDINPLLIQRLTEEWCNDLKYGGKILGLVRNILNLAVRYGYINNNPALPITPPKIK 158 Query: 168 TEG---IRPWTKEDMQQFKSFWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222 + +T + ++QF + F L ++G+R + L N Sbjct: 159 RKRKMNNNFYTLDQLKQFLELVEKTDNIEKIALFRLLAFTGIRKGELLALTWDDLNGNTL 218 Query: 223 SIKTQKTGTIITVEL------------------PDGFMKLLAMTPIGKETFFINNDKQKM 264 SI T T + +E+ + +L P F + M Sbjct: 219 SINKAVTRTQVGLEIDVTKTKSSDRLISLDDETLEILQELHETFPTSTLMF-QSESGGIM 277 Query: 265 NATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TY 322 + W + + + HG R A++ ++G + ++ G + Y Sbjct: 278 TPSLPRKWLLQIIKGTDLPQITIHGFRHTHASLLFESGLSLKQVQHRLGHGDLQTTMNVY 337 Query: 323 TK 324 T Sbjct: 338 TH 339 >gi|299137517|ref|ZP_07030698.1| integrase family protein [Acidobacterium sp. MP5ACTX8] gi|298600158|gb|EFI56315.1| integrase family protein [Acidobacterium sp. MP5ACTX8] Length = 346 Score = 107 bits (267), Expect = 3e-21, Method: Composition-based stats. Identities = 57/322 (17%), Positives = 104/322 (32%), Gaps = 30/322 (9%) Query: 20 KIIYYFRKGHGRRIRLPYPHESTFIPAYM----SALTGSTP----KREYINSPRKKPTTL 71 I YY GR R +S + Y AL G+ K + + L Sbjct: 24 WIRYYV---DGREHREKVGRQSDAVDLYRIRRADALRGAKMPANMKNKGVKFEEIGKHAL 80 Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131 +W I RK +F + I++ G +I I + ++ +P+ Sbjct: 81 EWYIEHGRKDV----------KNFRIRMNIILKDFGHRVAEEIKPSEIDAWLKKYDWSPA 130 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191 + + FK A V+ NP VE+ K +R + E+ + + Sbjct: 131 TKNCYKNVFGKTFKIAFADGKVSGNPARLVEQRPEKNARLRFLSAEEEAKIREAIDLRCP 190 Query: 192 PRLA-FEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDGFMKLLAMT 248 + + L +G+R S+ + + + K G+ + + +K Sbjct: 191 RHMPELDIALNTGMRKSEQYSLEWGQVSFRRKRILLDETKNGSSREIPMNKTCVKAFEEL 250 Query: 249 PIGKET---FFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATA 304 + F + + +N ++ WF A V N + H +R + AG Sbjct: 251 HADRPHEGRIFQSKYGRDLNDSR--AWFDRVVEDAKVSNFTWHALRHTFISRLVMAGVDL 308 Query: 305 HELMATYGWKTVDQAETYTKGA 326 G KT+ Y A Sbjct: 309 RTAQELAGHKTISMTVRYAHLA 330 >gi|258511365|ref|YP_003184799.1| integrase family protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257478091|gb|ACV58410.1| integrase family protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 307 Score = 107 bits (267), Expect = 3e-21, Method: Composition-based stats. Identities = 44/284 (15%), Positives = 90/284 (31%), Gaps = 21/284 (7%) Query: 68 PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE--- 124 ++ + + A + + S+ + + D + R Sbjct: 2 TQSVGDAVKVFLDDAA-LRFSPRTVRSYGQDLEAFRQWLDDRGVYDLDALSTRDVRMHAS 60 Query: 125 ---SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 ++ SS + L+ +R ++ + +V +V PKR R +E++ Sbjct: 61 DLLAKGAAKSSVARRLSCLRTFLRFCAERGWVRQVMAKNVRLPKRDRRLPRYLHEEEVAA 120 Query: 182 FKSFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE 236 + R EFL +G+R S+ + L + + K G V Sbjct: 121 LIDHVGGDDFVALRDRALLEFLYATGVRVSECVHLDIGDLDLSAGFARVLGKGGRERYVM 180 Query: 237 LPDGFMKLLAM-TPIGKET-----FFINNDKQKMNATQFSIWFKAKATKAGVNKSAH--G 288 + + L P+ FIN ++ + + + +S H G Sbjct: 181 VGRRAVDALRRYLPLRDRMARCSAVFINRRGGRLTDRSVRRVLERRIQEVPGLRSIHVHG 240 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 +R AT + GA + G ++ + YT R +L Sbjct: 241 LRHSFATHMLNGGADLRSVQELLGHASLSSTQIYTHT-SREQLA 283 >gi|167041103|gb|ABZ05864.1| putative Phage integrase family protein [uncultured marine microorganism HF4000_48F7] Length = 317 Score = 107 bits (267), Expect = 3e-21, Method: Composition-based stats. Identities = 36/275 (13%), Positives = 92/275 (33%), Gaps = 25/275 (9%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF---DYRKITTKHIRSGVESR 126 T + + + + + + ++ + + +G+ DY++ + + R Sbjct: 31 TFQKAVERFLAHCEARN-SPRTVYTYSDSLKRWQQANGNPCVQDYQRSQLDNYIAQERER 89 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + + +++ F WA +E V P +++ + T + W+++ ++ + + Sbjct: 90 GLNDRTINHHIRNVQRFFNWAYEEELVDR-PFK-LKQLRAVTVIPQTWSRDQLELMREYI 147 Query: 187 SEGSQP---------RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-----TQKTGTI 232 + R AF Y+G+R S+ H+ + ++ K Sbjct: 148 ERKLKETDSRRFIVLRRAFFLFRYTGMRASELIHLRWDHISHQGIWLESNKDWQTKGRAD 207 Query: 233 ITVELPDGFMKLLAMTPIGKETFFIN--NDKQKMN-ATQFSIWFKAKATKAGVN--KSAH 287 + + + L E F + + + + F+ + G+ K H Sbjct: 208 AILPVAKPLRQFLDAEAHNGEVFVCDDGSGGKFWRDYSSAGHSFQKMLDQLGLKGPKVLH 267 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 G R AT AG + + + + Y Sbjct: 268 GFRATVATELLAAGESPVLVQKLLRHQQLTTTLGY 302 >gi|146279751|ref|YP_001169909.1| hypothetical protein Rsph17025_3738 [Rhodobacter sphaeroides ATCC 17025] gi|145557992|gb|ABP72604.1| hypothetical protein Rsph17025_3738 [Rhodobacter sphaeroides ATCC 17025] Length = 384 Score = 107 bits (267), Expect = 3e-21, Method: Composition-based stats. Identities = 54/342 (15%), Positives = 107/342 (31%), Gaps = 26/342 (7%) Query: 17 RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSAL-----TGSTPKREYINSPRKKPTTL 71 R G ++ Y RRI L T A A+ + +K T+ Sbjct: 38 RKGYVVQYRAGRRSRRISLGPTTVLTCEQARTRAITIVAAARNGQDPAAERDAGRKAITI 97 Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESRKHTP 130 K L + K L ++ + + I+ G IT + +H P Sbjct: 98 KELAERFDKEHIAIRLKASTGKEYRRNLQRFILPALGQLTVTGITRADVAKFHHDLRHIP 157 Query: 131 SSAIQFLTSMRVLFK----WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----QQF 182 A + L + +F W +R + NP + + + R + ++ + Sbjct: 158 YQANRCLEVISKMFSLSEMWGLRPD--GTNPRKHIRKYPEEKRE-RFLSAAELRRIGEVL 214 Query: 183 KSFWSEG---SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTIITVEL 237 + +EG LA L+ +G R ++ ++ ++ + KTG + Sbjct: 215 REMEAEGVELPSAILAARLLILTGCRLNEIISLKWSYVDFDVPALRLPDSKTGAKVVHVG 274 Query: 238 PDGFMKLLAMTPIGKETFFI--NNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSAT 295 L I + I + ++ W + +A + H +R A+ Sbjct: 275 QPVVELLRDAQRIDGNPWVIAGTLPGKPLS-DLQPFWQRVRARAGVKDVRIHDLRHTFAS 333 Query: 296 ISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNS 336 + +G + G V Y A+ +R+ Sbjct: 334 TAVASGQGLPMIGKLLGHTQVQTTARYAHLAAEPVRMAADAV 375 >gi|320333098|ref|YP_004169809.1| integrase family protein [Deinococcus maricopensis DSM 21211] gi|319754387|gb|ADV66144.1| integrase family protein [Deinococcus maricopensis DSM 21211] Length = 297 Score = 107 bits (267), Expect = 3e-21, Method: Composition-based stats. Identities = 45/273 (16%), Positives = 85/273 (31%), Gaps = 22/273 (8%) Query: 73 WLISEYRKSAHWGSLAVNSRISF---ESYFDQIIRKSG-DFDYRKITTKHIRS---GVES 125 L ++ + N+ + + + + G D ++T H+R+ + Sbjct: 5 ALYEQFAYHLRIKRRSKNTLNFYDVSRRTLHRFLEQEGITPDTDELTVTHLRAFLVWLGD 64 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + P +++ +F W R+E + NP + +E P E T E M+ Sbjct: 65 QGLGPGGIHAQARALKAVFNWGFREELLTRNPAVRLELPSLPKERQPTVTVEVMRSLLKA 124 Query: 186 WS---EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDG- 240 + LL +GLR + ++ LQ I+ G V + Sbjct: 125 CKGTERPLRDSAIVLMLLDTGLRVHELIGLKLEDLQFERGLIRVVGKGNKERFVPVGSKA 184 Query: 241 -------FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVR 290 + G F++ + M + SI A G+ + H R Sbjct: 185 MSATSAYLRRERKQRHPGVPHVFLSRSGEVMTRSGISIRLAKLARSTGIEREACAPHAFR 244 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYT 323 + A G L G ++D Y Sbjct: 245 RGFAVEFLRNGGDVFTLQQIMGHSSLDMTRRYV 277 >gi|319788864|ref|YP_004090179.1| integrase family protein [Ruminococcus albus 7] gi|315450731|gb|ADU24293.1| integrase family protein [Ruminococcus albus 7] Length = 359 Score = 107 bits (267), Expect = 3e-21, Method: Composition-based stats. Identities = 53/292 (18%), Positives = 111/292 (38%), Gaps = 33/292 (11%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH 128 T+K L E+ S + + V+++ ++ + F+ I+ GD +IT+K + ++++ Sbjct: 60 TVKALCMEWL-SVNSHRVKVSTQANYMTKFEKHILPYFGDKMCYEITSKTVYGFIQAKLD 118 Query: 129 TPSSA---IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 SA L ++ +FK+A ++EY +NP +V PK R TK++ ++ K + Sbjct: 119 EGLSAGYVSNILVLLKTVFKYA-QKEYHILNPFDNVIMPKSTKSETRLLTKKEQKKLKEY 177 Query: 186 WSEG-SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT---------- 234 + L + GLR + C Q + ++ ++T I Sbjct: 178 LKSNVNTATLGISLAISMGLRIGEICGLTWQDIDFKCRTLTVRRTVQRIRVKGEAKKTKI 237 Query: 235 -------------VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281 + +P +L E + +++ + + + G Sbjct: 238 VILPPKSKSSFREIPIPTSVFAMLKNLRSTPEHYILSDSTEPKEPRMMYYDYVEILKELG 297 Query: 282 VN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKG-ADRIR 330 + H +R +A+ + +AG L G ++ Y DR R Sbjct: 298 LPSVKFHSLRHAAASNAIEAGFDVKTLSEVLGHSRIEMTMNLYVHSNMDRKR 349 >gi|15842437|ref|NP_337474.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis CDC1551] gi|13882740|gb|AAK47288.1| tyrosine recombinase XerC [Mycobacterium tuberculosis CDC1551] Length = 315 Score = 107 bits (267), Expect = 3e-21, Method: Composition-based stats. Identities = 42/267 (15%), Positives = 90/267 (33%), Gaps = 26/267 (9%) Query: 86 SLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRKHTPSSA---IQFLTSM 140 +V++R ++ + D +T +RS + + ++ + +++ Sbjct: 34 GRSVHTRRAYLGDLRSLFAFLADRGSSLDALTLSVLRSWLAATAGAGAARTTLARRTSAV 93 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS--------QP 192 + WAVR+ +A +P ++ PK + ++ + + G+ + Sbjct: 94 KAFTAWAVRRGLLAGDPAARLQVPKARRTLPAVLRQDQALRAMAAAESGAEQGDPLALRD 153 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAM---- 247 RL E L +G+R S+ C V + ++ K TV L Sbjct: 154 RLIVELLYATGIRVSELCGLDVDDIDTGHRLVRVLGKGNKQRTVPFGQPAADALHAWLVD 213 Query: 248 ------TPIGKETFFINNDKQKMNATQFSIWFKA--KATKAGVNKSAHGVRKFSATISAD 299 T + ++++ Q A + HG+R +AT + Sbjct: 214 GRRALVTAESGHALLLGARGRRLDVRQARTAVHQTVAAVDGAPDMGPHGLRHSAATHLLE 273 Query: 300 AGATAHELMATYGWKTVDQAETYTKGA 326 GA + G ++ + YT A Sbjct: 274 GGADLRVVQELLGHSSLATTQLYTHVA 300 >gi|170017324|ref|YP_001728243.1| site-specific recombinase XerD [Leuconostoc citreum KM20] gi|169804181|gb|ACA82799.1| Site-specific recombinase XerD [Leuconostoc citreum KM20] Length = 304 Score = 107 bits (267), Expect = 3e-21, Method: Composition-based stats. Identities = 37/278 (13%), Positives = 89/278 (32%), Gaps = 30/278 (10%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD-------FDYRKITTKHIRSGVESR 126 L +Y +S + + ++ S D+ + + + + + + R Sbjct: 11 LYRDYLQSER--QYSALTLKAYLSDIDEFVAFLERNGGFQTFKTVQTLDVRVYLNDLYER 68 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ-----Q 181 +S + ++S+R+ +++ + + NP +V K + + + +MQ Sbjct: 69 HLARTSIARKISSLRMFYQFLIANHFATDNPFENVALRKHQNHLPEFFYETEMQVLFEIA 128 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVE---- 236 + + E L +G R ++ + + + K V Sbjct: 129 YDQKDPLWQRNAALLECLYATGARVAEIATLTLSQIDFQQRLILIHGKGNKDRYVPFGHY 188 Query: 237 --------LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--A 286 + +L+A P F+N+ Q + A + ++ + Sbjct: 189 AQKAMQQYIAQLRPELVANCP-ENTVVFVNHRGQPITAAGITYILNTLMNRSTLTGKIHP 247 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R AT + GA + G + + YT Sbjct: 248 HMLRHTFATHLLNNGADMRTVQELLGHVNLSTTQMYTH 285 >gi|168215898|ref|ZP_02641523.1| phage integrase [Clostridium perfringens NCTC 8239] gi|182382275|gb|EDT79754.1| phage integrase [Clostridium perfringens NCTC 8239] Length = 400 Score = 107 bits (267), Expect = 3e-21, Method: Composition-based stats. Identities = 55/311 (17%), Positives = 93/311 (29%), Gaps = 51/311 (16%) Query: 64 PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK--SGDFDYRKITTKHIRS 121 P TL + + L +S +E + I G + T HI++ Sbjct: 71 PTDDKITLSKWFYTWLFTYRIHDLKPSSFERYEGLYRNYIESSSIGKIKLMDLRTHHIQA 130 Query: 122 GVESR----KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK---RKTEGIRPW 174 S + +PS+ ++ A+++ Y+ N C + PK E I + Sbjct: 131 YYNSLVSEERKSPSTIKTINKCLKSCLNQALKEGYITKNYCTLITLPKGSESPKEIINIF 190 Query: 175 TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSI-------- 224 T E+ Q F ++ + + L +GLR + + +NN I Sbjct: 191 TLEEQQTFMKEC-MNNKNGMLYILALGTGLRLGEILALKWTDINFKNNYIDINKAIKSTY 249 Query: 225 --------------KTQKTGTII-TVELPDGFMKLLAMTPI--------------GKETF 255 + KT I TV L D ++LL Sbjct: 250 KIDSKGNREFQIIEQQPKTKNSIRTVPLNDNLIELLQQHRKKQMIDRDSNIEIYFDNNLV 309 Query: 256 FINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWK 314 F +N + FK K + H +R AT + G + G Sbjct: 310 FSTPIGNYLNESNVRKTFKRILNKCNLKELRFHDLRHTFATRLFENGVPPKTVQTILGHS 369 Query: 315 TVDQA-ETYTK 324 + YT Sbjct: 370 DISTTLNIYTH 380 >gi|326562807|gb|EGE13102.1| tyrosine recombinase subunit XerC [Moraxella catarrhalis 46P47B1] gi|326563212|gb|EGE13480.1| tyrosine recombinase subunit XerC [Moraxella catarrhalis 12P80B1] gi|326563472|gb|EGE13735.1| tyrosine recombinase subunit XerC [Moraxella catarrhalis 103P14B1] gi|326573782|gb|EGE23739.1| tyrosine recombinase subunit XerC [Moraxella catarrhalis 101P30B1] Length = 330 Score = 107 bits (267), Expect = 3e-21, Method: Composition-based stats. Identities = 45/297 (15%), Positives = 106/297 (35%), Gaps = 30/297 (10%) Query: 58 REYINSPRKKPTTLKW-LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDY----- 111 +S + P++ W +S + + + ++ ++++ Q +Y Sbjct: 9 APTHSSHQSDPSSPAWGYLSSWCDELRLQNYSKHTITTYQTALIQFFNFLESDNYLGGDP 68 Query: 112 ----RKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167 R+ T+ + +E K P SA L+++R+ +++ ++Q +A+NP + Sbjct: 69 LACRRQDLTRFFSTRLEEEKIKPISAKLSLSAIRIFYQFLIKQGVIAVNPTTGYKIKSAP 128 Query: 168 TEGIRPWTKEDMQQFKS-FWSEGS-------QPRLAFEFLLYSGLRCSDSCRAGVQHLQN 219 + + ++Q E + + + FE + SGLR S+ + + Sbjct: 129 RKLPTVADELLIKQLLDQKTPEDTAKAYLWIRDKAMFELMYSSGLRLSELAGLNMGDVNF 188 Query: 220 NIFSIKTQKTGTIIT---------VELPDGFMKLLAMTPIGKETFFINND-KQKMNATQF 269 +I ++ G + L D + FI+ +++ Sbjct: 189 DIGIVRVLGKGNKTRQVPVGKKAMIALQDYLPHRNLWQKKNCKALFISERHGTRLSTRAI 248 Query: 270 SIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 + K AT AG+ + H +R A+ + + G + + + YT Sbjct: 249 QLRLKVCATMAGIELNMYPHLLRHCFASHVLSSSGDLRAIQEMLGHQNISTTQIYTH 305 >gi|121595977|ref|YP_987873.1| tyrosine recombinase XerC [Acidovorax sp. JS42] gi|120608057|gb|ABM43797.1| tyrosine recombinase XerC [Acidovorax sp. JS42] Length = 323 Score = 107 bits (267), Expect = 3e-21, Method: Composition-based stats. Identities = 44/288 (15%), Positives = 81/288 (28%), Gaps = 41/288 (14%) Query: 77 EYRKSAH-WGSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESR---KHTP 130 +Y + LA + + ++ + D ++T+ HIR V + Sbjct: 16 QYLEHVRVEKRLAARTLTLYTLDLQRLAAMAAGVDLPLLRLTSAHIRRFVAQMHAGGRSG 75 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG- 189 L+ R + WA RQ V NP V PK + ++ + G Sbjct: 76 RGIALILSGWRGFYTWAARQGLVPHNPVQDVRAPKAPKPLPKALPVDEAVRLAEHQETGA 135 Query: 190 -----SQPRLAFEFLLYSGLRCSDSCRA-------------GVQHLQNNIFSIKTQKTGT 231 ++ E L GLR + G LQ + K Sbjct: 136 DPWLETRDAAIVELLYGCGLRVGELVGLDVAPSPAAHQQGRGWVDLQAGEAHV-FGKGSK 194 Query: 232 IITVELPDGFMKLLAMTPIGK-------------ETFFINNDKQKMNATQFSIWFKAKAT 278 +V + L + FI ++ A + ++ Sbjct: 195 RRSVPVGRAAAAALQAWLAQRALPLGAAGAARLEPALFIGRRGARLTAQSVWSRLRQRSQ 254 Query: 279 KAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 AG+ H +R A+ + + G + + YT+ Sbjct: 255 VAGLTTPVHPHMLRHSFASHLLQSSGDLRAVQELLGHANITTTQVYTR 302 >gi|284990526|ref|YP_003409080.1| LigA [Geodermatophilus obscurus DSM 43160] gi|284063771|gb|ADB74709.1| LigA [Geodermatophilus obscurus DSM 43160] Length = 397 Score = 107 bits (266), Expect = 3e-21, Method: Composition-based stats. Identities = 57/331 (17%), Positives = 104/331 (31%), Gaps = 45/331 (13%) Query: 20 KIIYYFRKGHGR---RIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76 + +R GR R + ++ SAL T +P + T+ Sbjct: 16 RYRARYRDPGGRQHERRFVRKVDAQRWLDEATSALVTQT-----WTAPARGRVTVADWAD 70 Query: 77 EYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQ 135 + S + ++ + + ++ G +T + V S+A Sbjct: 71 RWLASQ--TGVKPSTLYRYGNLLRTHVLPTWGKHQLADVTHADVAVWVAKLLGQGSAAGT 128 Query: 136 FLTSMRV---LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-SEGSQ 191 + RV L AVR + NP V P+ R T +++++ +EG Sbjct: 129 VRQAHRVFSLLLGLAVRDGRIPRNPAERVPLPRVIRSEPRFLTHDEVERLADAAGAEGDV 188 Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQ---------------NNIFSIKTQKTGTIITVE 236 R L Y+GLR + V+ + T KT TV Sbjct: 189 IR----LLAYTGLRFGEMAALRVRRVDFLRRRLTIAEAVTEVGGRLEFGTPKTHQQRTVP 244 Query: 237 LPDGFMKLLAM---TPIGKETFFINNDKQKMNATQFSIWFKA----KATKAGV-NKSAHG 288 LP + LA G + + W + AG+ + + H Sbjct: 245 LPATLAEPLARRCEGKQGDDLLVTTASG---TVLRLRNWRRVVFDPAVRAAGLSDVTPHD 301 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQA 319 +R +A+++ +GAT + G + Sbjct: 302 LRHTAASLAVSSGATVKAVQRMLGHASAAMT 332 >gi|292491157|ref|YP_003526596.1| integrase family protein [Nitrosococcus halophilus Nc4] gi|291579752|gb|ADE14209.1| integrase family protein [Nitrosococcus halophilus Nc4] Length = 400 Score = 107 bits (266), Expect = 3e-21, Method: Composition-based stats. Identities = 46/303 (15%), Positives = 113/303 (37%), Gaps = 19/303 (6%) Query: 57 KREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKIT 115 +R + R+ P T+ L Y + + S E + ++ + G + I Sbjct: 87 ERIHKEEERQAP-TMAQLAELYLE--RYAKAKKRSWREDERLLKKDVLPRWGHRKAKDIV 143 Query: 116 TKHIRSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173 + + + ++ + +P A + L +R +F +A+ + + +NPC +V+ P ++ + R Sbjct: 144 RRDVVALLDDIIDRGSPIVANRTLACVRKMFNYALERSLIEMNPCSAVKMPGKERKRDRV 203 Query: 174 WTKEDMQQFKSFWSEG---SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQK 228 +E+++ F E RLA + L + + RA H ++I ++ Sbjct: 204 LNEEEIRTFWHGLKEARISLPIRLALQLQLVTAQCKGELIRAEWSHFDFALGWWTISAER 263 Query: 229 TGTII--TVELPDGFMKLLAMTPIGKETFFI--NNDKQKMNATQFSIWFKAKATKAGV-N 283 T + V L ++ + F N ++ + T + G+ Sbjct: 264 TKNHLAHRVPLSPLALESIEGLRGFHSLFLFPSRNGEKPLLDTSIDHAVRKNLDVLGIAP 323 Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK--GADRIRLGIKN-SRRIS 340 + H +R+ +A+ G + + Y + R ++ +++ Sbjct: 324 FTPHDLRRTAASHMTGMGISRLVVSKILNHAESGVTAVYDRHSYDSEKRHALEAWGKKLE 383 Query: 341 SVV 343 +++ Sbjct: 384 AII 386 >gi|237742399|ref|ZP_04572880.1| DNA integration/recombination/invertion protein [Fusobacterium sp. 4_1_13] gi|229430047|gb|EEO40259.1| DNA integration/recombination/invertion protein [Fusobacterium sp. 4_1_13] Length = 416 Score = 107 bits (266), Expect = 3e-21, Method: Composition-based stats. Identities = 61/391 (15%), Positives = 127/391 (32%), Gaps = 74/391 (18%) Query: 10 FVTKERTRHGKIIY----YFRKGHGRRIRLPYPHEST-----------FIPAYMSALTGS 54 + T + G+ + Y +K R+ L +S F+ M L Sbjct: 13 YTTSYTRKKGRFYHVVFEYVKKKGTRKKSLSRTTKSEDEEVANRMLDDFVIECMKILNID 72 Query: 55 TPKREYINSPR---------KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIR 104 + + + I Y K+ ++ ++ +ES +I Sbjct: 73 KKYKPKNRNKIIFNKDLNLYNTEISFCDFICGYIKTRR-KTIEDDTYSGYESIARCSLIP 131 Query: 105 KS--GDFDYRKITTKHIRSG----VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPC 158 + ++I I + R +P++ + + + ++FK+A+R + + NP Sbjct: 132 YFYRENKKLKEIEDFDIEKYYYHELNYRNISPNTVLHYHYLLSLVFKYALRHKIITRNPL 191 Query: 159 LSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL--YSGLRCSDSCRAGVQ- 215 SVE+PK+K + E++ + L F L+ Y GLR S+ Sbjct: 192 DSVEKPKKKKYVAEVYNAEEINILLDLLKR-EEENLYFGVLMAAYFGLRRSEVIGLKWSS 250 Query: 216 -----------------HLQNNIFSIKTQKTGTI-------ITVELPDGFMKLLAMTP-- 249 ++ + KT + + +E+ + +++ Sbjct: 251 INFEENTITIMSTVKETNIDGKHIFVCQDKTKSPAGLRSFSLPIEIKELLLEIKEKQEEN 310 Query: 250 ----------IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISA 298 KE ++++ +++ + F K + H +R ATI Sbjct: 311 KKYLGKGYYMEDKEYIYVDDGGKRLRPNYLTTRFGKFLKKFNLKHIRFHDLRHSCATILY 370 Query: 299 DAGATAHELMATYGWKTVDQA-ETYTKGADR 328 D A E+ G +V E Y +R Sbjct: 371 DNNAGIKEIQTYLGHSSVKTTMEIYVHLMNR 401 >gi|221065123|ref|ZP_03541228.1| integrase family protein [Comamonas testosteroni KF-1] gi|220710146|gb|EED65514.1| integrase family protein [Comamonas testosteroni KF-1] Length = 348 Score = 107 bits (266), Expect = 3e-21, Method: Composition-based stats. Identities = 49/320 (15%), Positives = 97/320 (30%), Gaps = 47/320 (14%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQI--IRKSGDFDYRKITTKHIR---SGVESRK 127 ++ Y + LA + + ++ + ++ D + + HIR + + S Sbjct: 19 VVHSYLEHVRVQKRLADRTHTLYALDLIKLQSLAQAADQELLTLQPAHIRRFAAQMHSAG 78 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + L+ R F+WA ++E V NP V PK + +D Q SF Sbjct: 79 RSARGIALILSGWRSFFRWAAQRELVPFNPVEGVRGPKAAKPLPKALAVDDAVQLASFQI 138 Query: 188 ------EGSQPRLAFEFLLYSGLRCSDSCRA-------------GVQHLQNNIFSIKTQK 228 ++ E L GLR ++ G L+ + K Sbjct: 139 PDADPWIEARDVAMTELLYSCGLRVAELVGLDLRPDQQSLQQGRGWIDLEAGDAHV-QGK 197 Query: 229 TGTIITVELPDGFMKLLAM---------------TPIGKETFFINNDKQKMNATQFSIWF 273 V + ++ L + FI +++ Sbjct: 198 GSKRRIVPVGRMAIEALQRWLALRSSALTGAAQFKAQDETALFIGRRGERLGGHSVWSRL 257 Query: 274 KAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 K + +AG+ H +R A+ + + G ++ + YT+ D L Sbjct: 258 KQRGQRAGLASGVHPHVLRHSFASHMLQSSGDLRAVQELLGHASIATTQIYTR-LDFQHL 316 Query: 332 GIKNSR---RISSVVDSDDP 348 + R ++ P Sbjct: 317 AQAYEKAHPRAQRSSAAEKP 336 >gi|115352465|ref|YP_774304.1| phage integrase family protein [Burkholderia ambifaria AMMD] gi|115282453|gb|ABI87970.1| phage integrase family protein [Burkholderia ambifaria AMMD] Length = 358 Score = 107 bits (266), Expect = 3e-21, Method: Composition-based stats. Identities = 59/343 (17%), Positives = 112/343 (32%), Gaps = 39/343 (11%) Query: 17 RHGKIIY-YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75 R GK+ + F+ R+ R + A A + + ++ P TL+ L+ Sbjct: 7 RVGKVWHCRFQINGTRQQRSTRETDRQ--RAEQVAEAAVRQAKLWTRDSKELP-TLRELV 63 Query: 76 SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKI----------TTKHIRSGVES 125 + W + ++ ++ +++ G + Sbjct: 64 RQ------WLVVHESTAS--RAHV-KVVETFGRLHLYDLADVLIDELSTDRVEFARVRHL 114 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 H P SA Q+L +R+L WAVR+ +A P V K + + + + Sbjct: 115 ESHAPVSANQWLKVLRLLCNWAVRRGILAAVPFR-VRALKVQKKPRAILPVAMARAWLDA 173 Query: 186 WSEG----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII--TVELPD 239 G + R A +L GLR S++ A + L + +T + +P Sbjct: 174 IDAGEGNRAGVRTAVRLMLGLGLRESETITARWEWLDVGRQTYTPGRTKGREADPIPVPA 233 Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA--GVNKSAHGVRKFSATIS 297 + L + F+ A +A + +AH +R AT+ Sbjct: 234 WLIDYLMADWKAAGPILQKANGCPY-PAGFTRSAMLAANRAVGAPHITAHRLRGTFATLL 292 Query: 298 ADAGATAHELMATYGWKTVDQAETY------TKGADRIRLGIK 334 ++AG + K + Y T A + R+ K Sbjct: 293 SEAGVPVQSIQRALRHKNLTTTAAYLEVDMGTVAAGQQRIAEK 335 >gi|308271817|emb|CBX28425.1| hypothetical protein N47_G37490 [uncultured Desulfobacterium sp.] Length = 392 Score = 107 bits (266), Expect = 3e-21, Method: Composition-based stats. Identities = 51/356 (14%), Positives = 100/356 (28%), Gaps = 34/356 (9%) Query: 16 TRHGKIIYY--FRKGHGRRIRLPYPHESTFIPAYMSA--LTGSTPKREYINSPRKKPTTL 71 + G++ Y+ +R GR++R + + G + ++ + T Sbjct: 31 KKSGRVRYWVSYRLPGGRQVRRIEGGGYSLKDTLAAEGKTKGLKVENRILDIKPEAKMTF 90 Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131 L Y LA + + + GD ++ + + RK Sbjct: 91 NQLTKWYLDLERVKMLARY--PILKINLNSFNQVFGDTIVNQLKPADLENYQAKRKAQGQ 148 Query: 132 S---AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG-----IRPWTKEDMQQFK 183 + Q + R + A + V+ + +R K+ +G R + E+ + Sbjct: 149 ADAYVDQQIAMARAMINKAFDNDIVSGDTIKVFKRVKKLLKGSSNTRDRVLSAEEFDKLM 208 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ----KTGTIITVELPD 239 + S + Y G+R + + I+ K V + D Sbjct: 209 NALP--SHAKAIVATGYYGGMRKGEVVNLTWDKVDMKGRVIRLGANDTKDREARQVPICD 266 Query: 240 GFMKLLAMTPIG--KETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--------AHGV 289 +L P F+ + + + AG+ H Sbjct: 267 ALYDILEEIPRAINDNHVFLFK-GKPI--KNLRTALRKACRVAGIPYGRGTKDGFVFHDT 323 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETY-TKGADRIRLGIKNSRRISSVVD 344 R T +G +M G T + Y T A R + VD Sbjct: 324 RHCFNTNMRKSGVPESVIMKITGHSTREMFLRYDTVDATDTRKAVDQMEGFLKSVD 379 >gi|295086221|emb|CBK67744.1| Site-specific recombinase XerD [Bacteroides xylanisolvens XB1A] Length = 213 Score = 107 bits (266), Expect = 3e-21, Method: Composition-based stats. Identities = 40/216 (18%), Positives = 74/216 (34%), Gaps = 15/216 (6%) Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 S+A L ++ + + A + + N ++ K + T +++++ Sbjct: 2 MASTANNNLNKLKCVLRLAYEDKRIKENIAPRLKHAKEASTRREFLTLDEVKKLAHTPCG 61 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHL----QNNI-FSIKTQKTGTIITVELPDGFMK 243 + A F +GLR SD R +++ I T+KT T + L D + Sbjct: 62 KPVVKSAALFSCLTGLRISDIIRLQWENIIRGADGGWCMHIVTKKTRTEAVLPLSDEALA 121 Query: 244 LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAG 301 L G+ F + M ++ K AG+ K + H R AT+ AG Sbjct: 122 LCGERSTGQ--VF-----KGMTQALLPLYLKDWIKSAGITKHITFHCFRHTYATLQLAAG 174 Query: 302 ATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKNS 336 + + V + Y D R + Sbjct: 175 TDLYTISKMLTHSNVATTQVYADVVNDLKRKASEQI 210 >gi|62185317|ref|YP_220102.1| site-specific tyrosine recombinase XerD [Chlamydophila abortus S26/3] gi|62148384|emb|CAH64151.1| putative site-specific recombinase [Chlamydophila abortus S26/3] Length = 299 Score = 107 bits (266), Expect = 3e-21, Method: Composition-based stats. Identities = 36/227 (15%), Positives = 73/227 (32%), Gaps = 22/227 (9%) Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 + RK ++ + L +++V F++ + + P +E PK T ++ Sbjct: 59 FVRQLHKRKEAEATLARRLIALKVFFRFLKEAKLLEHPP--LIEHPKIWKRLPTVLTPQE 116 Query: 179 MQQFKSFWS-------EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231 + + ++ L +G+R S+ C + + ++ + T K Sbjct: 117 VDALLAIPKKTPTSSLISTRDTAILHTLYSTGIRVSELCGLHIGDVSDDFLRV-TGKGSK 175 Query: 232 IITVELPD-----------GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA 280 V L F + L + F++ K+ + A + Sbjct: 176 TRLVPLGKLASAAIDAYLCPFRENLQKKQSEEHHLFLSIRGHKLERSCVWKRIHYYAKQV 235 Query: 281 GVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 + S H +R AT D A + G + E YT A Sbjct: 236 THKRVSPHSLRHAFATHLLDNKADLRVIQEMLGHARIASTEVYTHVA 282 >gi|319407841|emb|CBI81494.1| integrase/recombinase XerD [Bartonella sp. 1-1C] Length = 312 Score = 107 bits (266), Expect = 3e-21, Method: Composition-based stats. Identities = 43/286 (15%), Positives = 98/286 (34%), Gaps = 33/286 (11%) Query: 72 KWLISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH-----IRSGVES 125 +I + + + +V + ++++ K + + + S ++ Sbjct: 4 DAVIDHFLEMMSAERGASVCTLLAYQHDLQWAQNKLSSHSISFFSAQREDLINLLSLMQK 63 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 +S + L+++R F++ + +P ++ P++ + +++ + + F Sbjct: 64 AGCAATSQARRLSTLRQFFQFLYAEGLREDDPSSDIDSPRQGRPLPKIISEDAVTKLLDF 123 Query: 186 WSEGSQP--------------RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231 ++ ++ E L +GLR S+ VQ ++ I + G Sbjct: 124 AQLETEQAESGTQNYYRALRFQVLLEMLYATGLRISELVSLPVQAVRGKEQFILVRGKGE 183 Query: 232 IITVELPDG-----FMKLLAMTPIGKET----FFINNDKQKMNATQFSIW-FKAKATKAG 281 V L ++ L++ K+ F A QF K A +AG Sbjct: 184 KERVVLLSEKARQILLQWLSVRDQRKDATSIYLFPARSSTGYIARQFVARGLKDLAKRAG 243 Query: 282 V---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 + N S H +R A+ GA + G + + YT Sbjct: 244 IQSENFSPHVLRHAFASHLLQNGADLRAVQHLLGHCDISTTQIYTH 289 >gi|58616838|ref|YP_196037.1| tyrosine recombinase xerD [Ehrlichia ruminantium str. Gardel] gi|58416450|emb|CAI27563.1| Tyrosine recombinase xerD [Ehrlichia ruminantium str. Gardel] Length = 312 Score = 107 bits (266), Expect = 3e-21, Method: Composition-based stats. Identities = 42/273 (15%), Positives = 95/273 (34%), Gaps = 33/273 (12%) Query: 90 NSRISFESYFDQIIRKSGDFDYRKITT-----KHIRSGVESRKHTPSSAIQFLTSMRVLF 144 N+ S+ S + + + I K + R++ S+ + +++++ L+ Sbjct: 24 NTYQSYMSDLLDLCKFFDCKNLPLIEVSRDDLKDYVRLMHKREYKSSTISRKISAIKNLY 83 Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-----SEGSQPRLAFEFL 199 K+ + +A +P LS++ P+ + E++ + +G + L Sbjct: 84 KFFCKDNIIAYDPALSLDFPRLSRALPKALNIEEVSRLLDTAALDSSPDGLRTNAIINIL 143 Query: 200 LYSGLRCSDSCRAGV---------QHLQNNIFSIKTQKTGTIIT-------VELPDGFMK 243 SG+R S+ + +++ + +I+ + I V + Sbjct: 144 YSSGIRVSELIYLKLNSIKEALNNDNIEISYITIRGKANRERIVLLNSSAIVSIQKYLEV 203 Query: 244 LLAMTPIGKE----TFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKFSATI 296 + P G E F + + K + AGV+ S H +R AT Sbjct: 204 YMHFVPNGYEISQWLFPGTKFDNPITRQRIGQLLKDLSISAGVDMTRISPHKLRHSFATH 263 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRI 329 + G+ + G ++ + YT A+ Sbjct: 264 LLNNGSDIIFIQKMLGHTSLSTTQIYTYVANEK 296 >gi|296163572|ref|ZP_06846310.1| integrase family protein [Burkholderia sp. Ch1-1] gi|295886175|gb|EFG66055.1| integrase family protein [Burkholderia sp. Ch1-1] Length = 399 Score = 107 bits (266), Expect = 3e-21, Method: Composition-based stats. Identities = 55/322 (17%), Positives = 110/322 (34%), Gaps = 31/322 (9%) Query: 45 PAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-II 103 +++ + N+ RK P T+K + + +++ ++ D+ II Sbjct: 75 QEWLAEVRKGGDPSAAKNAARKAP-TMKEFCHTFMEDYSKQRNKPSTQRGYQGVIDRCII 133 Query: 104 RKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVA--INPCLSV 161 G + + + + ++ + + A + +R +F A NPC V Sbjct: 134 PNMGRMKVQDVKRPDVAALMKKLAYKRAEANRTFGVLRKMFNLAEVWGLRPDGTNPCRHV 193 Query: 162 ERPKRKTEGIRPWTKEDM----QQFKSFWSEGSQPR---LAFEFLLYSGLRCSDSCRAGV 214 + R +++ +Q + +EG + LA R S+ C Sbjct: 194 PM-YPPGKETRLIVDDELVRIFRQLEHLEAEGLENYVIPLAIRLQFEFAARRSEICPLEW 252 Query: 215 QHLQNN--IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFI----NNDKQKMNA-T 267 + KTG I+ + + +LL+ P + + ++ N+ + M Sbjct: 253 DWIDLEKRRVVWPDSKTGG-ISKPMSEEAYRLLSTAPRREGSPYVLPSPNDPTRHMTYGE 311 Query: 268 QFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 Q+ W + + HG+R + T A++G M G KTV Y D Sbjct: 312 QYGGWTRVLKAAGVPHVGTHGIRHRATTDIANSGVPTKVGMKLTGHKTVAMFMHYVHTED 371 Query: 328 R-----------IRLGIKNSRR 338 + RL I + R Sbjct: 372 KPVRDAAELVASRRLAITGASR 393 >gi|255534430|ref|YP_003094801.1| Integrase, site-specific recombinase [Flavobacteriaceae bacterium 3519-10] gi|255340626|gb|ACU06739.1| Integrase, site-specific recombinase [Flavobacteriaceae bacterium 3519-10] Length = 296 Score = 107 bits (266), Expect = 3e-21, Method: Composition-based stats. Identities = 42/262 (16%), Positives = 97/262 (37%), Gaps = 25/262 (9%) Query: 85 GSLAVNSRISFESYFDQ----IIRKSGDFDYRKITTKHIRSGVESRKHTP---SSAIQFL 137 + ++ S+ + ++R +Y ++ K IR+ + + S + L Sbjct: 13 KRYSPHTLTSYRRDLEDFSVFLLRTEAHHNYVEVDKKIIRNFMAALGEKAIAKRSINRKL 72 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPR 193 +++R + + ++ V +P +++ K E P++ ++M + Sbjct: 73 STLRSFYLFLLKIGEVKTSPLANIQTLKFYAEKQVPFSPDEMNDLQKEEFQPLKTNFLKE 132 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGF-------MKLL 245 L E L +G+R ++ + H+ +K T K V + D ++ Sbjct: 133 LIIETLYQTGMRRAELTGLLLDHVDLGKKELKITGKGNKQRIVPVSDDLCAQLEQYLEFR 192 Query: 246 AMTPIGKETFFINNDKQK----MNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAG 301 + FF++ +K + + + +K KS H +R AT + G Sbjct: 193 KPLKEYQMYFFVSAKGKKLNDKFVYSAVNTYLSLVTSKK--KKSPHILRHSFATHVLEEG 250 Query: 302 ATAHELMATYGWKTVDQAETYT 323 A ++ G K++ + YT Sbjct: 251 AEISKVKLLMGHKSLASTQVYT 272 >gi|120597821|ref|YP_962395.1| phage integrase family protein [Shewanella sp. W3-18-1] gi|120598661|ref|YP_963235.1| phage integrase family protein [Shewanella sp. W3-18-1] gi|120557914|gb|ABM23841.1| phage integrase family protein [Shewanella sp. W3-18-1] gi|120558754|gb|ABM24681.1| phage integrase family protein [Shewanella sp. W3-18-1] Length = 287 Score = 107 bits (266), Expect = 3e-21, Method: Composition-based stats. Identities = 43/269 (15%), Positives = 93/269 (34%), Gaps = 25/269 (9%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE----SRK 127 L+ ++ + +R ++ Q+ ++ + IT + + + R Sbjct: 2 SSLLQQFHDEISLRGYSARTRNAYLYAITQL-QQYANQPLDNITDEQLTAYFRYLNLERH 60 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 H+ ++ L + ++ +++++ + + PKR + + + +D+ + Sbjct: 61 HSRATLKLQLNGIHFFYEHVLKRDF-----TIQLSLPKRPHKLPQLLSCQDIAALL-YHC 114 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLL 245 + + R GLR S+ V + +K K V + + LL Sbjct: 115 QSLKQRAMLALCYGCGLRVSELTHIKVADIDGQRQLLKVCQGKGACDRWVIISPTLLTLL 174 Query: 246 AMT-----PIGKETFFINNDK---QKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSAT 295 P+ E F + ++ + F A AG+ S H +R AT Sbjct: 175 RQYWQAYHPV--EWLFASTYHDVVYPLHESTFRKALAKAARLAGITKPCSPHSLRHAYAT 232 Query: 296 ISADAGATAHELMATYGWKTVDQAETYTK 324 AG H+L A G ++ E Y Sbjct: 233 HQLQAGMPLHQLQAQLGHHSIKSTERYLH 261 >gi|83592556|ref|YP_426308.1| site-specific tyrosine recombinase XerC [Rhodospirillum rubrum ATCC 11170] gi|83575470|gb|ABC22021.1| tyrosine recombinase XerC subunit [Rhodospirillum rubrum ATCC 11170] Length = 330 Score = 107 bits (266), Expect = 3e-21, Method: Composition-based stats. Identities = 47/278 (16%), Positives = 88/278 (31%), Gaps = 28/278 (10%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD----YRKITTKHIRSGVESR 126 L WL E R S H ++ + G+ + R+ + +R Sbjct: 39 LGWLQGERRASRHTLD---AYGRDLAAFLTFLRDYRGEEPGLATLASLGPADFRAYMAAR 95 Query: 127 K----HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 PS A + L+++R LF+W R+ + ++ P++ + ++ + Sbjct: 96 LTQGLSRPSMA-RALSTLRNLFRWLDREGVLRNGAIATIRSPRQPQAVPKALSESEALDA 154 Query: 183 KSFWS-------EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235 S S + F L GLR ++ L + T K V Sbjct: 155 LSVASDLQDDPWLAKRDLALFTLLYGCGLRLGEALDLDRGDLPSGEVMRITGKGRKERLV 214 Query: 236 ELPD----GFMKLLAMTP---IGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSA 286 L LA P + F+ + +++N + G+ + Sbjct: 215 PLLPVVVEALADYLAACPFAGGPDDPLFLGSRGKRLNPGVVQRQMRRLRGFLGLPETATP 274 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R AT G + G ++ + YTK Sbjct: 275 HALRHSFATHLLAQGGDLRTIQELLGHASLSTTQRYTK 312 >gi|42526683|ref|NP_971781.1| phage integrase family site specific recombinase [Treponema denticola ATCC 35405] gi|41816876|gb|AAS11662.1| site-specific recombinase, phage integrase family [Treponema denticola ATCC 35405] Length = 354 Score = 107 bits (266), Expect = 3e-21, Method: Composition-based stats. Identities = 48/256 (18%), Positives = 91/256 (35%), Gaps = 20/256 (7%) Query: 92 RISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH----TPSSAIQFLTSMRVLFKWA 147 + I + S +T + ++ + +P + + S+R LFK A Sbjct: 87 KHPLHKVVLWIEKISPTLKMDALTPTWFENFQQTLQRETELSPYTCENYACSLRTLFKKA 146 Query: 148 VRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS---EGSQPRLAFEFLLYSGL 204 VR + +P + V+ ED+++ + G+ + AF F +GL Sbjct: 147 VRDGVLVKDPTIGVKHIHCPESIKEFLMPEDIRKLAAEPIGGILGADVKKAFLFACCTGL 206 Query: 205 RCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDGFMKLLAMTP------IGKETFF 256 R SD + + + QKT + + + D + L + ++ F Sbjct: 207 RISDLKSLKWGGVSFEKKTLTKIQQKTKRAVYLPIKDEAIAFLHLLAEENPNRTDEDFIF 266 Query: 257 INNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWK 314 + N Q+ I +AGV H R AT+ ++GA + + G Sbjct: 267 PHVATTGTNMNQYLI---EWGKRAGVRQKIGWHLARHTHATLLLESGADLYTVQKLLGHT 323 Query: 315 TVDQAETYTKGADRIR 330 + YT+ DR + Sbjct: 324 KISTTAQYTQVTDRKK 339 >gi|114571348|ref|YP_758028.1| phage integrase family protein [Maricaulis maris MCS10] gi|114341810|gb|ABI67090.1| phage integrase family protein [Maricaulis maris MCS10] Length = 311 Score = 107 bits (266), Expect = 3e-21, Method: Composition-based stats. Identities = 40/275 (14%), Positives = 85/275 (30%), Gaps = 30/275 (10%) Query: 85 GSLAVNSRISFESYFDQ----IIRKSGDFD----YRKITTKHIRSGVESRKH---TPSSA 133 L+ + +++ D + G ++++ R+ + SR+ + S Sbjct: 25 RRLSPRTLDAYQRDLDNFGAFLCEHHGRLPDLMTLGDLSSRDFRAYMASRRRDGLSARSL 84 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLS-VERPKRKTEGIRPWTKEDMQQFKSFWSEG--- 189 + L+++R F +A R+ + N LS VE PK +P ++ + + Sbjct: 85 ARALSAIRTFFDYAKRR-WGVDNAALSLVESPKLLRSAPKPVSESAAKSLLAETGARGGP 143 Query: 190 ----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245 ++ L GLR S++ L K V + + + Sbjct: 144 DWVSARDNAVLLLLYGCGLRISEALSLTGNDLPIGDTLRIAGKGNKTRIVPVLPAVAEAI 203 Query: 246 -------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATI 296 F ++A + + G+ + H +R AT Sbjct: 204 SQYVALCPFATKDDAALFRGVRGGNLSARSVQALMQELRGRLGLPETATPHALRHAFATH 263 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 G + G ++ + Y + RL Sbjct: 264 LLAHGGDLRAIQELLGHASLSTTQIYA-DVESARL 297 >gi|259909812|ref|YP_002650168.1| site-specific tyrosine recombinase XerC [Erwinia pyrifoliae Ep1/96] gi|224965434|emb|CAX56966.1| site-specific tyrosine recombinase [Erwinia pyrifoliae Ep1/96] Length = 351 Score = 107 bits (266), Expect = 3e-21, Method: Composition-based stats. Identities = 44/289 (15%), Positives = 99/289 (34%), Gaps = 32/289 (11%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFE---SYFDQIIRKSGDFDYRKITTKHIRSGVESR 126 TL+ L + + + + F G +++ + + Sbjct: 20 TLRQLAESWLAHLVVAGRSPRTVQGYRERVRAFLAWCEPRGITYAPQVSLAVLEAYQRWL 79 Query: 127 KHTPSSAIQ---------FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI-RPWTK 176 + + + LT++R+LF+W +++ + NP + PK + + +++ Sbjct: 80 QGYRRADGKQLVVNSQLGVLTAIRMLFRWLLQRHVILYNPAELLALPKEERRLPAQVFSE 139 Query: 177 ED----MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTG 230 + +Q + G + R E L SG+R S+ + + + +++ K G Sbjct: 140 AETRRVLQSLDAGTPPGLRNRAILELLWSSGIRRSELAGLLLSDVDFTRGVVNVRRGKGG 199 Query: 231 TIITVEL----PDGFMKLLA------MTPIGKETFFINNDKQKMNATQFSIWF-KAKATK 279 V + + L FI++ + + +A Sbjct: 200 KDRVVPVGHTALMWLGRYLKDVRPRLAQRFDSGHLFISHKGTGLAHGTLTAMAGRAIREG 259 Query: 280 AGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 A + K+ H R AT + GA + A G + ++ + YT+ A Sbjct: 260 AHLKKAGACHIFRHSMATQMLENGADTRHIQAILGHEKLETTQIYTRVA 308 >gi|213158313|ref|YP_002320364.1| tyrosine recombinase XerC [Acinetobacter baumannii AB0057] gi|215482572|ref|YP_002324764.1| Tyrosine recombinase xerC [Acinetobacter baumannii AB307-0294] gi|294837791|ref|ZP_06782474.1| site-specific tyrosine recombinase [Acinetobacter sp. 6013113] gi|301594795|ref|ZP_07239803.1| site-specific tyrosine recombinase [Acinetobacter baumannii AB059] gi|213057473|gb|ACJ42375.1| tyrosine recombinase XerC [Acinetobacter baumannii AB0057] gi|213986400|gb|ACJ56699.1| Tyrosine recombinase xerC [Acinetobacter baumannii AB307-0294] Length = 304 Score = 107 bits (266), Expect = 3e-21, Method: Composition-based stats. Identities = 49/279 (17%), Positives = 98/279 (35%), Gaps = 27/279 (9%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGVESR---- 126 L+S + K + + ++ ++E + + D R + +R + R Sbjct: 6 QLLSMWLKERKIQNQSEHTITAYERDVRSFLEFCELKKVDLRNVEASDLREYLAQRVEQD 65 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + + SS + LTS+R KWA + +Y+ INP + ++ E + Q Sbjct: 66 QLSSSSMQRHLTSIRQFMKWAEQGKYLEINPTDDFKLKRQPRPLPGMIDIETVNQILDQP 125 Query: 187 SEG--------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV--- 235 + + E L SGLR ++ ++ + N ++ G + Sbjct: 126 MPEKPIDQQLWLRDKAMLELLYSSGLRLAELQGLTIKDIDFNRQLVRITGKGNKTRIVPF 185 Query: 236 --ELPDGFMKLLAMTPIGKETF------FINNDKQKMNATQFSIWFKAKATKAGV--NKS 285 + + + L + I K F FI+ + Q K +A +AGV + Sbjct: 186 GKKAKESLLNWLKIYNIWKGHFDQNASVFISQRGGALTPRQIEKRVKLQAQRAGVNVDLH 245 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R A+ + + G + + YT Sbjct: 246 PHLLRHCFASHMLSSSGDLRSVQEMLGHSNLSTTQIYTH 284 >gi|305664395|ref|YP_003860682.1| putative site-specific recombinase [Maribacter sp. HTCC2170] gi|88708412|gb|EAR00648.1| putative site-specific recombinase [Maribacter sp. HTCC2170] Length = 297 Score = 107 bits (266), Expect = 3e-21, Method: Composition-based stats. Identities = 44/211 (20%), Positives = 77/211 (36%), Gaps = 17/211 (8%) Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS--- 187 S + + S++ +K+ R + INP + K + P+++E+MQ+ Sbjct: 67 RSVNRKIASLKAYYKFLQRVGSININPLAKHKALKTSKKIEVPFSEEEMQRILLQLPFED 126 Query: 188 --EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKL 244 EGS+ +L E L +G+R S+ + N S+K K V L + L Sbjct: 127 DFEGSRDKLIIELLYTTGIRRSELINLRTNSVDLNQRSMKVLGKRNKERIVPLLLPTIDL 186 Query: 245 LAMT---------PIGKETFFINNDKQKMNATQFSIWFKAK--ATKAGVNKSAHGVRKFS 293 E F+ K+ T K + V +S H +R Sbjct: 187 FEAYFRYRKELENITHDEYIFLTISGNKIYETLVYRIIKGYFSKVSSKVKRSPHILRHTF 246 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTK 324 AT + GA + + G ++ + YT Sbjct: 247 ATHLLNKGADLNSVKELLGHSSLASTQVYTH 277 >gi|269219629|ref|ZP_06163483.1| integrase/recombinase XerC [Actinomyces sp. oral taxon 848 str. F0332] gi|269210871|gb|EEZ77211.1| integrase/recombinase XerC [Actinomyces sp. oral taxon 848 str. F0332] Length = 303 Score = 107 bits (266), Expect = 3e-21, Method: Composition-based stats. Identities = 46/289 (15%), Positives = 92/289 (31%), Gaps = 30/289 (10%) Query: 75 ISEYRKSAHWGS-LAVNSRISF----ESYFDQIIRKSG-----DFDYRKITTKHIRSGVE 124 + Y + L+ N+ ++ S + I +G D R + +R+ + Sbjct: 7 LDAYERELRLRRGLSENTVAAYVREARSLLEFIWEIAGGDVEEPMDLRGLELADVRAWLA 66 Query: 125 S---RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 + + S+ + S+R +W R+ + ++ ++ P+ R +E ++ Sbjct: 67 RSQAKGRSRSTLARHSASIRTFCRWLHRKGHTDVDAAARLKAPRADNALPRVLNQEQARR 126 Query: 182 FKSFW--------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII 233 + A E L SG+R + C V L + K Sbjct: 127 LAEHAGRLAASGDPLALRDHAAVELLYASGIRIGELCSLDVDSLGADSTLRVIGKGDKER 186 Query: 234 TVELP-DGFMKLLAMTPIGKE-------TFFINNDKQKMNATQFSIWFKAKATKAGV-NK 284 V L A P + F+ +++ A AGV + Sbjct: 187 IVPFGVPARRALTAYLPARAQLLVRPNRALFLGARGGRLDPRTLRKTIHRLAASAGVPDI 246 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 S H +R +AT D G+ + G ++ + YT + Sbjct: 247 SPHDLRHSAATHLLDGGSDLRTVQEILGHASLGTTQRYTHVSSERLRAA 295 >gi|260556505|ref|ZP_05828723.1| tyrosine recombinase XerC [Acinetobacter baumannii ATCC 19606] gi|260409764|gb|EEX03064.1| tyrosine recombinase XerC [Acinetobacter baumannii ATCC 19606] Length = 308 Score = 107 bits (266), Expect = 4e-21, Method: Composition-based stats. Identities = 49/279 (17%), Positives = 98/279 (35%), Gaps = 27/279 (9%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGVESR---- 126 L+S + K + + ++ ++E + + D R + +R + R Sbjct: 10 QLLSMWLKERKIQNQSEHTITAYERDVKSFLEFCELKKVDLRNVEASDLREYLAQRVEQD 69 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + + SS + LTS+R KWA + +Y+ INP + ++ E + Q Sbjct: 70 QLSSSSMQRHLTSIRQFMKWAEQGKYLEINPTDDFKLKRQPRPLPGMIDIETVNQILDQP 129 Query: 187 SEG--------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV--- 235 + + E L SGLR ++ ++ + N ++ G + Sbjct: 130 MPEKPIDQQLWLRDKAMLELLYSSGLRLAELQGLTIKDIDFNRQLVRITGKGNKTRIVPF 189 Query: 236 --ELPDGFMKLLAMTPIGKETF------FINNDKQKMNATQFSIWFKAKATKAGV--NKS 285 + + + L + I K F FI+ + Q K +A +AGV + Sbjct: 190 GKKAKESLLNWLKIYNIWKGHFDQNAPVFISQRGGALTPRQIEKRVKLQAQRAGVNVDLH 249 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R A+ + + G + + YT Sbjct: 250 PHLLRHCFASHMLSSSGDLRSVQEMLGHSNLSTTQIYTH 288 >gi|218442606|ref|YP_002380927.1| integrase [Cyanothece sp. PCC 7424] gi|218175377|gb|ACK74108.1| integrase family protein [Cyanothece sp. PCC 7424] Length = 329 Score = 107 bits (266), Expect = 4e-21, Method: Composition-based stats. Identities = 47/282 (16%), Positives = 97/282 (34%), Gaps = 38/282 (13%) Query: 85 GSLAVNSRISFESYFDQIIR-----KSGDFDYRKITTKHIRSGV-ESRKHTPSSAIQFLT 138 G+ + ++ ++ ++ Q + + ++ K+ R + E + P++ LT Sbjct: 35 GNASDDTLKTYIAHIKQFFKWCRHNRLDPLHLNRLQIKNYRHYLVERMNYKPATIALKLT 94 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP---WTKEDMQQFKSFWS-----EGS 190 ++R + A+ ++ NP L ++ P K + + ++ Q + Sbjct: 95 TVRRFYDCAISYGLISFNPALGIKPPVEKRDPAERINYLERAEVAQLLASLPTDDSVASL 154 Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDGFMKLL--- 245 + R ++ G R + R + + Q N ++ +I V L LL Sbjct: 155 RERTLIGIMVLQGCRTVEMHRLKMHDIIRQGNNVGLRVSGKRSIRVVPLTPDLALLLDKY 214 Query: 246 --AMTPIGKET-----FFIN----NDKQKMNATQFS-------IWFKAKATKAGVNKSAH 287 A T G FI+ N + ++ FK T A + H Sbjct: 215 LAARTAAGDRLNDNTPIFISLSNANYGEPLSRRSIQRIVQKHLQAFKQTGTNA-RKLTTH 273 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 +R + T++ GA ++ G Y ADR Sbjct: 274 SLRHTAGTLALRTGAELRQVQDMLGHADPRTTALYAHIADRW 315 >gi|222112165|ref|YP_002554429.1| tyrosine recombinase xerc [Acidovorax ebreus TPSY] gi|221731609|gb|ACM34429.1| tyrosine recombinase XerC [Acidovorax ebreus TPSY] Length = 323 Score = 107 bits (266), Expect = 4e-21, Method: Composition-based stats. Identities = 44/288 (15%), Positives = 82/288 (28%), Gaps = 41/288 (14%) Query: 77 EYRKSAH-WGSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESR---KHTP 130 +Y + LA + + ++ + D ++T+ HIR V + Sbjct: 16 QYLEHVRVEKRLAARTLTLYTLDLQRLAAMAAGVDLPLLRLTSAHIRRFVAQMHAGGRSG 75 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG- 189 L+ R + WA RQ V NP V PK + ++ + G Sbjct: 76 RGIALILSGWRGFYTWAARQGLVPHNPVQDVRAPKAPKPLPKALPVDEAVRLAEHQETGA 135 Query: 190 -----SQPRLAFEFLLYSGLRCSDSCRA-------------GVQHLQNNIFSIKTQKTGT 231 ++ E L GLR + G LQ + K Sbjct: 136 DPWLEARDAAIVELLYGCGLRVGELVGLDVAPSPAAHQQGRGWVDLQAGEAHV-FGKGSK 194 Query: 232 IITVEL-------------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKAT 278 +V + A + FI ++ A + + ++ Sbjct: 195 RRSVPVGRAAAAALQAWLAQRALPFGAAGAARLEPALFIGRRGARLTAQSVWLRLRQRSQ 254 Query: 279 KAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 AG+ H +R A+ + + G + + YT+ Sbjct: 255 VAGLTTPVHPHMLRHSFASHLLQSSGDLRAVQELLGHANITTTQVYTR 302 >gi|50085725|ref|YP_047235.1| site-specific tyrosine recombinase [Acinetobacter sp. ADP1] gi|49531701|emb|CAG69413.1| site-specific tyrosine recombinase [Acinetobacter sp. ADP1] Length = 305 Score = 107 bits (266), Expect = 4e-21, Method: Composition-based stats. Identities = 46/281 (16%), Positives = 97/281 (34%), Gaps = 29/281 (10%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKI--TTKHIRSGVESR--- 126 + L++ + K + + ++ +++ + +R + R Sbjct: 5 QQLLAMWLKERMIQNQSEHTLNAYQRDLTDFFDFCEKRKLELMQVEASDLREYLAYRVEQ 64 Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED-----MQ 180 + SS + L+S+R KWA + +++ +NP + KRK+ + + + Sbjct: 65 SNLSSSSIQRHLSSIRQFMKWAQQSQFLNMNPVEDFK-LKRKSRPLPGMIDIETVHQILD 123 Query: 181 QFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV- 235 Q G+ + + E L SGLR ++ + L N ++ G V Sbjct: 124 QTAPEDELGTQLWLRDKAILELLYSSGLRLAELQGLKLIDLDFNRQLLRVTGKGNKTRVI 183 Query: 236 --------ELPDGFM--KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--N 283 L D +L ++ F++ + + Q K +A +AGV + Sbjct: 184 PFGKKAKQSLIDWLNVYRLWKGQFTQQDPLFVSQNGGALTPRQIENRVKHQALRAGVNVD 243 Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R A+ A + G + + YT Sbjct: 244 LHPHLLRHCFASHMLSASGDLRSVQEMLGHSNLSTTQIYTH 284 >gi|254483258|ref|ZP_05096490.1| tyrosine recombinase XerC [marine gamma proteobacterium HTCC2148] gi|214036481|gb|EEB77156.1| tyrosine recombinase XerC [marine gamma proteobacterium HTCC2148] Length = 304 Score = 107 bits (266), Expect = 4e-21, Method: Composition-based stats. Identities = 40/270 (14%), Positives = 90/270 (33%), Gaps = 24/270 (8%) Query: 77 EYRKSAHWGSLAVNSRISFESYF---DQIIRKSGDFDYRKITTKHIRSG---VESRKHTP 130 +Y + L+ ++ +++ + + ++ IR+ + R Sbjct: 14 DYLRDVR--QLSPHTLENYQRDLASLQRYGEQIKKQTAAELDEADIRAWVSQLHRRGLAG 71 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ---FKSFWS 187 SS + L++ R F + R NP +V+ P++ + + + + + F+ Sbjct: 72 SSIQRSLSAARSFFNYLSRINGHPRNPAAAVQAPRKPRKLPKTLDADQVDRYLMFEDDSP 131 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFMKLL- 245 + E SGLR ++ + + T K TV + +K + Sbjct: 132 TALRDHAMAELFYSSGLRLAELNSVNINDIDRGSRLLTVTGKGNKTRTVPVGSAALKAID 191 Query: 246 ---------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSA 294 A F +N Q+++ K + KAG+ + H +R A Sbjct: 192 KWLTVRPDIAADEDASVALFTSNRGQRISVRNIQARLKLQGRKAGMRQDVHPHMLRHSFA 251 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTK 324 + ++ + G + + YT Sbjct: 252 SHMLESSGDLRAVQELLGHANISTTQIYTH 281 >gi|154496597|ref|ZP_02035293.1| hypothetical protein BACCAP_00889 [Bacteroides capillosus ATCC 29799] gi|150274230|gb|EDN01321.1| hypothetical protein BACCAP_00889 [Bacteroides capillosus ATCC 29799] Length = 377 Score = 107 bits (266), Expect = 4e-21, Method: Composition-based stats. Identities = 55/342 (16%), Positives = 119/342 (34%), Gaps = 40/342 (11%) Query: 24 YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAH 83 Y R GRR++ + A L + E + TL + + + Sbjct: 25 YGRDEDGRRVKKYRT--CATLAAARRVLREFQSELESRQQVAPRALTLDQWLEYWMEQVV 82 Query: 84 WGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSG----VESRKHTPSSAIQFLT 138 + A + + D + GD +K+T +H++ + + +P++ + Sbjct: 83 EPNRAETTIYGYRKIIDNHLSDALGDIPVQKLTPRHLQEYYAMLMRDKGLSPNTVRRHHD 142 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEF 198 + AVRQ+ + +P VE P+ + + E++++ + +EG+ L + Sbjct: 143 LLSAALHTAVRQDIILRSPTERVEPPRVVPREVGYYGPEELKKLYAL-AEGTGLELVVKL 201 Query: 199 LLYSGLRCSDSCRAGVQHLQ----------------NNIFSIKTQKTGTIITVELPDGFM 242 GLR + C + I +T+ + + + D + Sbjct: 202 AGMLGLRREEICGLQWSSVDFAQRRIHICAARTAAGGEIIQKETKNRSSTRVLHMSDELV 261 Query: 243 KLLAMTPIGK--------------ETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAH 287 +LL G+ +++ ++ S+ F + + K + H Sbjct: 262 RLLRRERAGQAENRLALGDKWEDSGLVAVDHMGHPLSPNAVSLAFTRFIRRNNLPKITLH 321 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADR 328 G+R AT+++ GA ++ G T YT D+ Sbjct: 322 GLRHTFATVASAQGAPLFDIGKALGHSTPATTGRIYTHLLDQ 363 >gi|291286467|ref|YP_003503283.1| integrase family protein [Denitrovibrio acetiphilus DSM 12809] gi|290883627|gb|ADD67327.1| integrase family protein [Denitrovibrio acetiphilus DSM 12809] Length = 385 Score = 107 bits (266), Expect = 4e-21, Method: Composition-based stats. Identities = 45/304 (14%), Positives = 106/304 (34%), Gaps = 42/304 (13%) Query: 69 TTLKWLISEYRKSAHWGSLAV-----NSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123 T W W L ++ ++++ + G+ +I HI++ + Sbjct: 90 GTYAW---------QWYDLKEPNIAYSTSKAYKTAVKALCETFGNMPLNQIKPSHIQTYI 140 Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 + +P + ++ + + + V + + N +++P+ +E I P+ K +++Q Sbjct: 141 SKSELSPKTISNYIGVLYSVLQAGVADDILEKNSAEYIDKPEIGSEKIDPFEKSEVEQIL 200 Query: 184 SFWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ------------KT 229 W++ + P + + Y+G+R + + N +I Q KT Sbjct: 201 K-WTKKNHPHITVLYAIGFYTGMRIGEVLALKWSDIDFNKHTILVQRTMTANKLKDSTKT 259 Query: 230 GTIITVELPDGFMKLLAM----TPIGKETFFINNDKQKMNA-TQFSIWFKAKATKAGVNK 284 +++ + L T + E + + + KA + Sbjct: 260 SNYRIIDIIPELDEYLEAHKKYTFMKSEWVILTHYGDPFKKTDNIVDSYYKPCLKA-LKM 318 Query: 285 SAHGV---RKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRI---RLGIKNSR 337 + R A + DAG + + G T++ + Y +R R G+ S+ Sbjct: 319 RFRILNQMRHSFACMMIDAGENLNWIKNMLGHSTLEMLFKKYGNRINRQDGTRKGVLFSK 378 Query: 338 RISS 341 + S Sbjct: 379 KAES 382 >gi|224367178|ref|YP_002601341.1| Phage integrase/recombinase family protein [Desulfobacterium autotrophicum HRM2] gi|223689894|gb|ACN13177.1| Phage integrase/recombinase family protein [Desulfobacterium autotrophicum HRM2] Length = 301 Score = 107 bits (266), Expect = 4e-21, Method: Composition-based stats. Identities = 37/274 (13%), Positives = 84/274 (30%), Gaps = 31/274 (11%) Query: 88 AVNSRISFESYFDQIIRKSGDFDYRKIT------TKHIRSGVESRKHTPSSAIQFLTSMR 141 + NS +++ + G ++ + ++ + + + L+++ Sbjct: 19 SDNSVDTYDRAIRTFLDFLGISSPEELRLITHGHVIAFKKFLQDQGRSARTINNRLSAIS 78 Query: 142 VLFKWAVRQEYVAINPCLSVER--PKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRLA 195 LF + Q+ V IN V+R + T ++++ + G + R Sbjct: 79 SLFNHLIDQQVVKINVAQGVKRMPVNASRVEAKVLTPDEVRNLLNSPDLSKLQGLRDRAI 138 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIK---TQKTGTIITVELPDGFMKLLA------ 246 L ++G R S+ C ++ K G + + L Sbjct: 139 LSTLFFTGCRVSEVCSLKIKDFYEEQGFFVLDFWVKGGKRNRMAINQELQIALDQYLTDA 198 Query: 247 -MTPIGKETFFI--------NNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATI 296 P F+ ++ K+ ++ F A G+ + H R T Sbjct: 199 GHGPDPASFLFLPVKSGYKASDPKRNLSRRTIDHLFNKYANTIGIAGITPHSARATFITQ 258 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 + + + T G + + Y K + R Sbjct: 259 ALENNCPIEAVQKTVGHAQIKTTQMYDKRTAKYR 292 >gi|326572966|gb|EGE22945.1| tyrosine recombinase subunit XerC [Moraxella catarrhalis CO72] Length = 331 Score = 107 bits (266), Expect = 4e-21, Method: Composition-based stats. Identities = 45/297 (15%), Positives = 106/297 (35%), Gaps = 30/297 (10%) Query: 58 REYINSPRKKPTTLKW-LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDY----- 111 +S + P++ W +S + + + ++ ++++ Q +Y Sbjct: 9 APTHSSHQSDPSSPAWGYLSSWCDELRLQNYSKHTITTYQTALIQFFNFLESDNYLGGDP 68 Query: 112 ----RKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167 R+ T+ + +E K P SA L+++R+ +++ ++Q +A+NP + Sbjct: 69 LACRRQDLTRFFSTRLEEEKIKPISAKLSLSAIRIFYQFLIKQGVIAVNPTTGYKIKSAP 128 Query: 168 TEGIRPWTKEDMQQFKS-FWSEGS-------QPRLAFEFLLYSGLRCSDSCRAGVQHLQN 219 + + ++Q E + + + FE + SGLR S+ + + Sbjct: 129 RKLPTVADELLIKQLLDQKTPEDTAKAYLWIRDKAMFELMYSSGLRLSELAGLNMGDVNF 188 Query: 220 NIFSIKTQKTGTIIT---------VELPDGFMKLLAMTPIGKETFFINND-KQKMNATQF 269 +I ++ G + L D + FI+ +++ Sbjct: 189 DIGIVRVLGKGNKTRQVPVGKKAMIALQDYLPHRNLWQKKNCKALFISERHGTRLSTRAI 248 Query: 270 SIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 + K AT AG+ + H +R A+ + + G + + + YT Sbjct: 249 QLRLKVCATMAGIELNMYPHLLRHCFASHVLSSSGDLRAIQEMLGHQNISTTQIYTH 305 >gi|311109403|ref|YP_003982256.1| tyrosine recombinase XerC [Achromobacter xylosoxidans A8] gi|310764092|gb|ADP19541.1| tyrosine recombinase XerC [Achromobacter xylosoxidans A8] Length = 331 Score = 107 bits (266), Expect = 4e-21, Method: Composition-based stats. Identities = 43/279 (15%), Positives = 85/279 (30%), Gaps = 39/279 (13%) Query: 85 GSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIR---SGVESRKHTPSSAIQFLTS 139 + ++ + + KI HIR + + ++ P S + L + Sbjct: 32 RRYSPHTLDGYRRELHFLRELADHAKLPLDKIGNGHIRQFVARLHAQGRGPRSLARTLAA 91 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-------SEGSQP 192 R ++W +A NP V PK + + E Q + Sbjct: 92 WRGFYQWWAPAIELAGNPVAGVRAPKAPRGLPKALSVEQTQALLDRAPAQVATEPAALRD 151 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQ------NNIFS------IKTQKTGTIITVELPDG 240 + E L SGLR S+ +++ + S I K G +V + Sbjct: 152 QAMLELLYSSGLRLSELVGLDLRYERSGNYESRGWLSLEEAEVIVLGKGGKRRSVPVGQA 211 Query: 241 FMKLLA-------------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKS 285 ++ L P F+ ++++ + A +AGV + Sbjct: 212 ALEALRKWIAVRPQLTPFTAQPEDAAALFLGARGRRISPRVVQLQLARIAQQAGVPTHVH 271 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R A+ + + G + + YT+ Sbjct: 272 PHVLRHSFASHVLQSAQDLRAVQEMLGHANISTTQIYTR 310 >gi|217961112|ref|YP_002339680.1| prophage LambdaBa03, site-specific recombinase, phage integrase family [Bacillus cereus AH187] gi|229140330|ref|ZP_04268885.1| hypothetical protein bcere0013_34290 [Bacillus cereus BDRD-ST26] gi|217063254|gb|ACJ77504.1| prophage LambdaBa03, site-specific recombinase, phage integrase family [Bacillus cereus AH187] gi|228642891|gb|EEK99167.1| hypothetical protein bcere0013_34290 [Bacillus cereus BDRD-ST26] Length = 304 Score = 107 bits (266), Expect = 4e-21, Method: Composition-based stats. Identities = 48/291 (16%), Positives = 94/291 (32%), Gaps = 26/291 (8%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR----KSGDFDYRKITTKHIRSGVESR 126 L+ +I EY + + Q+ R + G + I T H++ V ++ Sbjct: 3 LEDVIEEYLYHCLAKGFTPKTMKNKRQEMKQLKRFLMDEKGISELEAINTLHLKQYVRTK 62 Query: 127 ---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----M 179 P S + +R F W ++EY+ N VE PK + ++ +T ++ + Sbjct: 63 YKEGLQPQSIVSMFKLVRAFFSWCQKEEYLKENIAKKVELPKVPKKLLKGFTIQEVSAMI 122 Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD 239 F ++ + L GLR + Q+++ + + I + + Sbjct: 123 DAFSYKNYIEARNKAIVAMLSDCGLRAMEIRGLLTQNVKETTILVNGKGNKERI-MFISP 181 Query: 240 GFMKLLAM-----------TPIGKETFFINNDKQKMNATQFSIWFKAKATK---AGVNKS 285 K+L + + +F++ ++ K + V S Sbjct: 182 PLKKILIRYERLRKQYLKDKIVKTDNYFLSYTADPLSHMGIYNVIKEAGKRVEVEEVRCS 241 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336 H R F A G L G V + Y + + L K Sbjct: 242 PHTFRHFFAVQCILNGIDIFTLSKLLGHSDVSTTQRYLQSLEDFELIKKAM 292 >gi|15610031|ref|NP_217410.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis H37Rv] gi|31794070|ref|NP_856563.1| site-specific tyrosine recombinase XerC [Mycobacterium bovis AF2122/97] gi|121638775|ref|YP_978999.1| site-specific tyrosine recombinase XerC [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148662738|ref|YP_001284261.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis H37Ra] gi|148824083|ref|YP_001288837.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis F11] gi|215404868|ref|ZP_03417049.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis 02_1987] gi|215431842|ref|ZP_03429761.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis EAS054] gi|219558917|ref|ZP_03537993.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis T17] gi|224991267|ref|YP_002645956.1| site-specific tyrosine recombinase [Mycobacterium bovis BCG str. Tokyo 172] gi|253798018|ref|YP_003031019.1| integrase xerC [Mycobacterium tuberculosis KZN 1435] gi|254232988|ref|ZP_04926315.1| integrase/recombinase xerC [Mycobacterium tuberculosis C] gi|254365534|ref|ZP_04981579.1| integrase/recombinase xerC [Mycobacterium tuberculosis str. Haarlem] gi|254551966|ref|ZP_05142413.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260187913|ref|ZP_05765387.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis CPHL_A] gi|260202029|ref|ZP_05769520.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis T46] gi|260206212|ref|ZP_05773703.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis K85] gi|289444449|ref|ZP_06434193.1| tyrosine recombinase XerC [Mycobacterium tuberculosis T46] gi|289448559|ref|ZP_06438303.1| integrase xerC [Mycobacterium tuberculosis CPHL_A] gi|289553317|ref|ZP_06442527.1| integrase xerC [Mycobacterium tuberculosis KZN 605] gi|289571083|ref|ZP_06451310.1| integrase xerC [Mycobacterium tuberculosis T17] gi|289575599|ref|ZP_06455826.1| integrase xerC [Mycobacterium tuberculosis K85] gi|289746693|ref|ZP_06506071.1| tyrosine recombinase XerC [Mycobacterium tuberculosis 02_1987] gi|289755006|ref|ZP_06514384.1| tyrosine recombinase XerC [Mycobacterium tuberculosis EAS054] gi|294994010|ref|ZP_06799701.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis 210] gi|297635512|ref|ZP_06953292.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis KZN 4207] gi|297732511|ref|ZP_06961629.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis KZN R506] gi|306777182|ref|ZP_07415519.1| integrase xerC [Mycobacterium tuberculosis SUMu001] gi|306781089|ref|ZP_07419426.1| integrase xerC [Mycobacterium tuberculosis SUMu002] gi|306785729|ref|ZP_07424051.1| integrase xerC [Mycobacterium tuberculosis SUMu003] gi|306789768|ref|ZP_07428090.1| integrase xerC [Mycobacterium tuberculosis SUMu004] gi|306794582|ref|ZP_07432884.1| integrase xerC [Mycobacterium tuberculosis SUMu005] gi|306798823|ref|ZP_07437125.1| integrase xerC [Mycobacterium tuberculosis SUMu006] gi|306804671|ref|ZP_07441339.1| integrase xerC [Mycobacterium tuberculosis SUMu008] gi|306808863|ref|ZP_07445531.1| integrase xerC [Mycobacterium tuberculosis SUMu007] gi|306968962|ref|ZP_07481623.1| integrase xerC [Mycobacterium tuberculosis SUMu009] gi|306973299|ref|ZP_07485960.1| integrase xerC [Mycobacterium tuberculosis SUMu010] gi|307081007|ref|ZP_07490177.1| integrase xerC [Mycobacterium tuberculosis SUMu011] gi|307085605|ref|ZP_07494718.1| integrase xerC [Mycobacterium tuberculosis SUMu012] gi|313659843|ref|ZP_07816723.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis KZN V2475] gi|54039881|sp|P67629|XERC_MYCBO RecName: Full=Tyrosine recombinase xerC gi|54042778|sp|P67628|XERC_MYCTU RecName: Full=Tyrosine recombinase xerC gi|166918887|sp|A1KMN8|XERC_MYCBP RecName: Full=Tyrosine recombinase xerC gi|166918891|sp|A5U6P9|XERC_MYCTA RecName: Full=Tyrosine recombinase xerC gi|254799347|sp|C1AG09|XERC_MYCBT RecName: Full=Tyrosine recombinase xerC gi|3250705|emb|CAA98378.1| PROBABLE INTEGRASE/RECOMBINASE XERC [Mycobacterium tuberculosis H37Rv] gi|31619665|emb|CAD96605.1| PROBABLE INTEGRASE/RECOMBINASE XERC [Mycobacterium bovis AF2122/97] gi|121494423|emb|CAL72904.1| Probable integrase/recombinase xerC [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|124602047|gb|EAY61057.1| integrase/recombinase xerC [Mycobacterium tuberculosis C] gi|134151047|gb|EBA43092.1| integrase/recombinase xerC [Mycobacterium tuberculosis str. Haarlem] gi|148506890|gb|ABQ74699.1| tyrosine recombinase [Mycobacterium tuberculosis H37Ra] gi|148722610|gb|ABR07235.1| integrase/recombinase xerC [Mycobacterium tuberculosis F11] gi|224774382|dbj|BAH27188.1| site-specific tyrosine recombinase [Mycobacterium bovis BCG str. Tokyo 172] gi|253319521|gb|ACT24124.1| integrase xerC [Mycobacterium tuberculosis KZN 1435] gi|289417368|gb|EFD14608.1| tyrosine recombinase XerC [Mycobacterium tuberculosis T46] gi|289421517|gb|EFD18718.1| integrase xerC [Mycobacterium tuberculosis CPHL_A] gi|289437949|gb|EFD20442.1| integrase xerC [Mycobacterium tuberculosis KZN 605] gi|289540030|gb|EFD44608.1| integrase xerC [Mycobacterium tuberculosis K85] gi|289544837|gb|EFD48485.1| integrase xerC [Mycobacterium tuberculosis T17] gi|289687221|gb|EFD54709.1| tyrosine recombinase XerC [Mycobacterium tuberculosis 02_1987] gi|289695593|gb|EFD63022.1| tyrosine recombinase XerC [Mycobacterium tuberculosis EAS054] gi|308214464|gb|EFO73863.1| integrase xerC [Mycobacterium tuberculosis SUMu001] gi|308326075|gb|EFP14926.1| integrase xerC [Mycobacterium tuberculosis SUMu002] gi|308329639|gb|EFP18490.1| integrase xerC [Mycobacterium tuberculosis SUMu003] gi|308333778|gb|EFP22629.1| integrase xerC [Mycobacterium tuberculosis SUMu004] gi|308337172|gb|EFP26023.1| integrase xerC [Mycobacterium tuberculosis SUMu005] gi|308340939|gb|EFP29790.1| integrase xerC [Mycobacterium tuberculosis SUMu006] gi|308344815|gb|EFP33666.1| integrase xerC [Mycobacterium tuberculosis SUMu007] gi|308348763|gb|EFP37614.1| integrase xerC [Mycobacterium tuberculosis SUMu008] gi|308353464|gb|EFP42315.1| integrase xerC [Mycobacterium tuberculosis SUMu009] gi|308357329|gb|EFP46180.1| integrase xerC [Mycobacterium tuberculosis SUMu010] gi|308361213|gb|EFP50064.1| integrase xerC [Mycobacterium tuberculosis SUMu011] gi|308364867|gb|EFP53718.1| integrase xerC [Mycobacterium tuberculosis SUMu012] gi|323718504|gb|EGB27675.1| integrase xerC [Mycobacterium tuberculosis CDC1551A] gi|326904508|gb|EGE51441.1| integrase xerC [Mycobacterium tuberculosis W-148] gi|328457792|gb|AEB03215.1| integrase xerC [Mycobacterium tuberculosis KZN 4207] Length = 298 Score = 107 bits (266), Expect = 4e-21, Method: Composition-based stats. Identities = 42/267 (15%), Positives = 90/267 (33%), Gaps = 26/267 (9%) Query: 86 SLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRKHTPSSA---IQFLTSM 140 +V++R ++ + D +T +RS + + ++ + +++ Sbjct: 17 GRSVHTRRAYLGDLRSLFAFLADRGSSLDALTLSVLRSWLAATAGAGAARTTLARRTSAV 76 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS--------QP 192 + WAVR+ +A +P ++ PK + ++ + + G+ + Sbjct: 77 KAFTAWAVRRGLLAGDPAARLQVPKARRTLPAVLRQDQALRAMAAAESGAEQGDPLALRD 136 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAM---- 247 RL E L +G+R S+ C V + ++ K TV L Sbjct: 137 RLIVELLYATGIRVSELCGLDVDDIDTGHRLVRVLGKGNKQRTVPFGQPAADALHAWLVD 196 Query: 248 ------TPIGKETFFINNDKQKMNATQFSIWFKA--KATKAGVNKSAHGVRKFSATISAD 299 T + ++++ Q A + HG+R +AT + Sbjct: 197 GRRALVTAESGHALLLGARGRRLDVRQARTAVHQTVAAVDGAPDMGPHGLRHSAATHLLE 256 Query: 300 AGATAHELMATYGWKTVDQAETYTKGA 326 GA + G ++ + YT A Sbjct: 257 GGADLRVVQELLGHSSLATTQLYTHVA 283 >gi|320333377|ref|YP_004170088.1| integrase family protein [Deinococcus maricopensis DSM 21211] gi|319754666|gb|ADV66423.1| integrase family protein [Deinococcus maricopensis DSM 21211] Length = 297 Score = 107 bits (266), Expect = 4e-21, Method: Composition-based stats. Identities = 47/276 (17%), Positives = 87/276 (31%), Gaps = 22/276 (7%) Query: 70 TLKWLISEY-------RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG 122 ++ L + R+S + + +R + + ++ ++ + Sbjct: 2 SIDQLWQHFAYHLKVKRRSKNTLNFYDVTRRTLARFLEEQGVEATTDTLTVSQLRGFLVW 61 Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 +E + P ++R LF WA R+E V+ N +E P E T E + + Sbjct: 62 LEEQGLGPGGIHAHARALRALFNWAEREELVSRNLASRLELPSLPHERQPAITSERLWKL 121 Query: 183 KSFWS-EGSQPR-LAFEFLLY-SGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELP 238 G Q R A L+ +G+R + V+ L I+ G V + Sbjct: 122 LGACKGAGQQLRDTAMLLTLFDTGVRVHELIGLKVEDLLFERGLIRVVGKGNKERFVPIG 181 Query: 239 DG--------FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAH 287 + G F++ + M + SI A G+ + H Sbjct: 182 SKAMSATSAYLRRERKQQHPGVLHVFLSRSGEAMTRSGVSIRLAKLAKNTGIEREVCAPH 241 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 R+ A G L G ++D Y Sbjct: 242 AFRRGFAVEFLRNGGDVFTLQQIMGHSSLDMTRRYV 277 >gi|283470467|emb|CAQ49678.1| tyrosine recombinase XerC [Staphylococcus aureus subsp. aureus ST398] Length = 298 Score = 107 bits (266), Expect = 4e-21, Method: Composition-based stats. Identities = 37/266 (13%), Positives = 94/266 (35%), Gaps = 22/266 (8%) Query: 85 GSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGVE---SRKHTPSSAIQFLTS 139 + + ++ S++ Q + + + R+ + S +S + +++ Sbjct: 16 RNFSEHTLKSYQDDLIQFNQFLEQEHLQLNTFEYRDARNYLSYLYSNHLKRTSVSRKIST 75 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF----KSFWSEGSQPRLA 195 +R +++ + + INP + + PK++ + + +E+M+ + S+ + R+ Sbjct: 76 LRTFYEYWMTLDENIINPFVQLVHPKKEKYLPQFFYEEEMEALFKTVEEDASKSLRDRVI 135 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVE--------LPDGFMKLL 245 E L +G+R S+ Q + N ++ K V + + Sbjct: 136 LELLYATGIRVSELVNIKKQDIDFYANGVTV-LGKGSKERFVPFGAYCRQSIENYLEHFK 194 Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATK-AGV-NKSAHGVRKFSATISADAGAT 303 + + +N + + + AGV H +R AT + GA Sbjct: 195 PIQSCNHDFLIVNMKGEAITERGVRYVLNNIVKRTAGVSEIHPHKLRHTFATHLLNQGAD 254 Query: 304 AHELMATYGWKTVDQAETYTKGADRI 329 + + G + YT +++ Sbjct: 255 LRTVQSLLGHVNLSTTGKYTHVSNQQ 280 >gi|255026829|ref|ZP_05298815.1| hypothetical protein LmonocytFSL_11776 [Listeria monocytogenes FSL J2-003] Length = 259 Score = 107 bits (266), Expect = 4e-21, Method: Composition-based stats. Identities = 32/230 (13%), Positives = 82/230 (35%), Gaps = 19/230 (8%) Query: 114 ITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173 + + + ++ + + ++ + ++S+R + + +R+ + NP V K + + Sbjct: 13 LDVRIYLTELKQKSFSRTTVARKISSLRSFYTFLLRENVINENPFTYVSHAKNQLRLPKF 72 Query: 174 WTKEDMQQ-----FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQ 227 + E+M+ ++ + + R+ E L +G+R S+ + L + +I Sbjct: 73 FYSEEMEALFQVVYEDNETLTLRDRVLLEVLYGTGIRVSECAGILLPDLDTSYQAILIRG 132 Query: 228 KTGTIITVEL-----------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAK 276 K V + L++ + +N+ + Sbjct: 133 KGNKERYVPFGAYAEDAITDYLPERVNLMSRYKKSHDALLVNHYGDPLTTRGIRYCLTKI 192 Query: 277 ATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 +KA + + H +R AT + GA + G ++ + YT Sbjct: 193 ISKASLTRKIHPHMLRHTFATDLLNNGADMRTVQELLGHASLSSTQIYTH 242 >gi|239500991|ref|ZP_04660301.1| site-specific tyrosine recombinase [Acinetobacter baumannii AB900] Length = 304 Score = 107 bits (266), Expect = 4e-21, Method: Composition-based stats. Identities = 49/279 (17%), Positives = 98/279 (35%), Gaps = 27/279 (9%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGVESR---- 126 L+S + K + + ++ ++E + + D R + +R + R Sbjct: 6 QLLSMWLKERKIQNQSEHTITAYERDVRSFLEFCELKKVDLRNVEASDLREYLAQRVEQD 65 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + + SS + LTS+R KWA + +Y+ INP + ++ E + Q Sbjct: 66 QLSSSSMQRHLTSIRQFMKWAEQGKYLEINPTDDFKLKRQPRPLPGMIDIETVNQILDQP 125 Query: 187 SEG--------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV--- 235 + + E L SGLR ++ ++ + N ++ G + Sbjct: 126 MPEKPVDQQLWLRDKAMLELLYSSGLRLAELQGLTIKDIDFNRQLVRITGKGNKTRIVPF 185 Query: 236 --ELPDGFMKLLAMTPIGKETF------FINNDKQKMNATQFSIWFKAKATKAGV--NKS 285 + + + L + I K F FI+ + Q K +A +AGV + Sbjct: 186 GKKAKESLLNWLKIYNIWKGHFDQNASVFISQRGSALTPRQIEKRVKLQAQRAGVNVDLH 245 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R A+ + + G + + YT Sbjct: 246 PHLLRHCFASHMLSSSGDLRSVQEMLGHSNLSTTQIYTH 284 >gi|84498372|ref|ZP_00997169.1| tyrosine recombinase [Janibacter sp. HTCC2649] gi|84381872|gb|EAP97755.1| tyrosine recombinase [Janibacter sp. HTCC2649] Length = 325 Score = 107 bits (266), Expect = 4e-21, Method: Composition-based stats. Identities = 44/300 (14%), Positives = 89/300 (29%), Gaps = 39/300 (13%) Query: 73 WLISEYRKSAHW-GSLAVNSRISFESYFDQIIRK-------------SGDFDYRKITTKH 118 +I + + S + ++ ++ + + + + I Sbjct: 19 AVIDAFERHLRLERSRSPHTVRAYLADLRDFLAHVDGEGANEGGTPRAPQTALQDIRLAD 78 Query: 119 IRSGV---ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175 +R+ + + SS + S+R F WA RQ +V ++P L + PKR Sbjct: 79 LRAWLGVLAAAGAARSSVARRSASLRTFFGWATRQGHVDVDPSLRLVAPKRHRTLPPVLA 138 Query: 176 KEDMQQFKSFW--------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT- 226 K+D + R E L +G+R + + + + ++ Sbjct: 139 KDDAAGLLDVAAVAADDNDPVHVRNRAVLELLYATGVRVGELTGLDIDDVDFHSNVVRVI 198 Query: 227 QKTGTIITVELPDGFMKLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAK 276 K V LA F+ ++++ Q Sbjct: 199 GKGDKERRVPFGGPARSALAKWLDVGRPRLVVDGSGPGLFLGQRGRRIDPRQVRTLVHDM 258 Query: 277 A--TKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIK 334 + HG+R +AT + GA + G ++ + YT RL Sbjct: 259 LTHVPDAPDLGPHGLRHSAATHLLEGGADLRMVQELLGHASLATTQIYTH-VSIERLAAS 317 >gi|296392530|ref|YP_003657414.1| integrase family protein [Segniliparus rotundus DSM 44985] gi|296179677|gb|ADG96583.1| integrase family protein [Segniliparus rotundus DSM 44985] Length = 349 Score = 107 bits (266), Expect = 4e-21, Method: Composition-based stats. Identities = 41/274 (14%), Positives = 80/274 (29%), Gaps = 9/274 (3%) Query: 59 EYINSPRKKPTTLKW------LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYR 112 + SP T L+ E+ L+ + G + Sbjct: 48 PAVLSPVNVAGTHHAHNVAMLLVQEWELFMLARRLSQRTITERIRVIKSFASSIGIEPSQ 107 Query: 113 KITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172 R + SS + ++ FKW E+ +P + V + R Sbjct: 108 ASALDVARWLAQQSSLGQSSLATYSQYLKAWFKWLQVHEHRTDDPMVKVGTVRYPDRAPR 167 Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232 P + D+ + + + RL +GLR + + + + + +F K Sbjct: 168 PVSDRDLARLLETVNR-KRTRLMVLLYCLAGLRAFEIAKLRGEDIVDGVFVRVLGKGNKE 226 Query: 233 ITVELPDGFMKLLAMTPIGKETFFINND--KQKMNATQFSIWFKAKATKAGVNKSAHGVR 290 V L + P F ++ ++ S +AGV + H +R Sbjct: 227 RLVPLHPILQAIAPTMPERGWWFPRDSRWPGMHISGKSVSQTISLTMRRAGVRATPHQLR 286 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK 324 + T D G + ++ YT+ Sbjct: 287 HWQGTTLLDEGVDIRVVQEIMRHASISTTAQYTQ 320 >gi|218260320|ref|ZP_03475692.1| hypothetical protein PRABACTJOHN_01354 [Parabacteroides johnsonii DSM 18315] gi|218224605|gb|EEC97255.1| hypothetical protein PRABACTJOHN_01354 [Parabacteroides johnsonii DSM 18315] Length = 397 Score = 107 bits (266), Expect = 4e-21, Method: Composition-based stats. Identities = 43/212 (20%), Positives = 79/212 (37%), Gaps = 18/212 (8%) Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE---RPKRKTEGIRPWTKEDMQQFKSFWS 187 +S I + +R A ++ + +NP + + K + T ++++ Sbjct: 180 NSVIAYYGVLRTAINRAYKEGIITVNPTKEFDFASKVKAEVSRREYLTIDELKLLIGTEC 239 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVELPDGFMK 243 + + AF F GLR SD + L + IK QKT + + + D +K Sbjct: 240 KYEIMKQAFLFSCLCGLRVSDIRKLKWNDLQKSGERIRIEIKMQKTKEPLYLPISDEALK 299 Query: 244 LLAMT--PIGKETFF-INNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISA 298 L G + F + ++ + + A AGV + S H R AT+ Sbjct: 300 WLPQQNEAKGDDLIFPLTHEG------TINKILQKWAKDAGVIKHISFHVARHTHATMML 353 Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRIR 330 GA + + G K + + Y K D+ + Sbjct: 354 TLGADLYTVSKLLGHKNIATTQIYAKIVDKKK 385 >gi|309775481|ref|ZP_07670483.1| integrase/recombinase XerD [Erysipelotrichaceae bacterium 3_1_53] gi|308916777|gb|EFP62515.1| integrase/recombinase XerD [Erysipelotrichaceae bacterium 3_1_53] Length = 323 Score = 107 bits (266), Expect = 4e-21, Method: Composition-based stats. Identities = 46/277 (16%), Positives = 93/277 (33%), Gaps = 26/277 (9%) Query: 78 YRKSAHWGSLA--VNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH------- 128 Y ++ +LA + + + Y +I K I + I+S + + Sbjct: 13 YIQAVDQKALATIHSYQQDLQEYEVWLIGKH-KQVMEDILPQDIQSFLSELEDGQKGEDG 71 Query: 129 -TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 SS LTS+ + ++ Q ++P + + K++ + + D+++ + Sbjct: 72 RKRSSVNHMLTSIHMFHRYITMQHPTILDPSIHLRGGKKEQQLPLYFNPHDIERLLDSFG 131 Query: 188 EGSQ---PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMK 243 E + + E L GLR S+ C + + ++ K V + + Sbjct: 132 EDERSLYQKAILELLYGCGLRVSEVCELRLNQVHLEQGYLRVIGKGDKERMVPMHKRCVL 191 Query: 244 LLAM---------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKF 292 L + FIN+ + K + ++ SAH R Sbjct: 192 ALRVYVTQIRPGWEKRKSTRVFINSRGNILTRQYVHTLIKQRLHMLNLDERLSAHSFRHS 251 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 AT D GA + G + + + YT +R Sbjct: 252 FATHLLDGGADLRVVQELLGHRDIATTQIYTHVQNRR 288 >gi|260549307|ref|ZP_05823527.1| site-specific tyrosine recombinase [Acinetobacter sp. RUH2624] gi|260407713|gb|EEX01186.1| site-specific tyrosine recombinase [Acinetobacter sp. RUH2624] Length = 308 Score = 107 bits (266), Expect = 4e-21, Method: Composition-based stats. Identities = 48/279 (17%), Positives = 98/279 (35%), Gaps = 27/279 (9%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGVESR---- 126 L+S + K + + ++ ++E + S + + + +R + R Sbjct: 10 QLLSMWLKERKIQNQSEHTITAYERDVKSFLEFCDSKKINLKNVEASDLREYLAQRVEQD 69 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + + SS + LTS+R KWA + +Y+ INP + ++ E + Q Sbjct: 70 QLSASSMQRHLTSIRQFMKWAEQGKYLEINPTDDFKLKRQPRPLPGMIDIETVNQILDQP 129 Query: 187 SEG--------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV--- 235 + + E L SGLR ++ ++ + N ++ G + Sbjct: 130 MPEKPIDQQLWLRDKAMLELLYSSGLRLAELQGLTIKDIDFNRHLVRITGKGNKTRIVPF 189 Query: 236 --ELPDGFMKLLAMTPIGKETF------FINNDKQKMNATQFSIWFKAKATKAGV--NKS 285 + + + L + I K F FI+ + Q K +A +AGV + Sbjct: 190 GKKAKESLLNWLKVYKIWKGHFDQNAFVFISQHGGVLTPRQIEKRVKLQAQRAGVNVDLH 249 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R A+ + + G + + YT Sbjct: 250 PHLLRHCFASHMLSSSGDLRSVQEMLGHSNLSTTQIYTH 288 >gi|162448003|ref|YP_001621135.1| integrase/recombinase, XerD-like protein [Acholeplasma laidlawii PG-8A] gi|161986110|gb|ABX81759.1| integrase/recombinase, XerD-like protein [Acholeplasma laidlawii PG-8A] Length = 306 Score = 107 bits (266), Expect = 4e-21, Method: Composition-based stats. Identities = 31/230 (13%), Positives = 77/230 (33%), Gaps = 22/230 (9%) Query: 116 TKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175 ++ S ++++ + + L+S++ + + + +E + N ++ PK Sbjct: 54 ARNYISYLDNQDFKKKTIARKLSSLKNFYNYLIFKELIEENIFSDIKAPKVAKTLPHIID 113 Query: 176 KEDM----QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKT 229 +E + + G + + + L G+R S+ ++ + + I K Sbjct: 114 EEAINYLFDSIDTSKPLGYRNLVILDLLYSCGVRASELINLEIKDIYLSSGQILIH-GKG 172 Query: 230 GTIITVELPDGFMKLLAM---------TPIGKET----FFINNDKQKMNATQFSIWFKAK 276 + L + ++ + G +T FIN + + Sbjct: 173 KKDRYIILHEKLIEEIRHYLSFVRVTLLSKGDDTNQQKLFINYKGGPLTVRGLRVILNQM 232 Query: 277 ATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 +G + H +R AT + GA + G + + + YT Sbjct: 233 IKDSGETYAIHPHMLRHAFATTMLNHGADLRVVQELLGHEHLKSTQIYTH 282 >gi|307822023|ref|ZP_07652255.1| integrase family protein [Methylobacter tundripaludum SV96] gi|307736589|gb|EFO07434.1| integrase family protein [Methylobacter tundripaludum SV96] Length = 381 Score = 107 bits (266), Expect = 4e-21, Method: Composition-based stats. Identities = 37/256 (14%), Positives = 87/256 (33%), Gaps = 23/256 (8%) Query: 91 SRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPSSAIQF--------LTSM 140 ++ + D R IT+ + S + R + P + + L + Sbjct: 31 TQEKYRIAL-YCRYPIADLPVRSITSVDVASFRDQRLSEINPRTGNRLASATVRLDLALL 89 Query: 141 RVLFKWA-VRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-SEGSQPRLA-FE 197 +F+ + NP ++ +PK R T + + + +G++ LA F+ Sbjct: 90 SDMFRIGKIEWGICDDNPVANIRKPKLSPGRDRRLTAREERMILRYCNKQGTKAMLAIFQ 149 Query: 198 FLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF 255 L + +R + +H+ + I + K+G+ V L +L + Sbjct: 150 LALETAMRQGEILSLRWEHINLKARIAHLSDTKSGSKRDVPLTMAARDILTGQGVKSSGR 209 Query: 256 FINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGA-TAHELMATYGW 313 + + +++ + + H +R + + + G E+ A G Sbjct: 210 VFS-----YTSNGLKSSWRSMIRNLLINDLHFHDLRHEAISRLVERGVFDLMEVAAISGH 264 Query: 314 KTVDQAETYTKGADRI 329 K++ + YT + Sbjct: 265 KSLAMLKRYTHLRTQR 280 >gi|71725297|ref|YP_272272.1| phage integrase family site specific recombinase [Pseudomonas syringae pv. phaseolicola 1448A] gi|71558887|gb|AAZ38096.1| site-specific recombinase, phage integrase family [Pseudomonas syringae pv. phaseolicola 1448A] Length = 319 Score = 107 bits (266), Expect = 4e-21, Method: Composition-based stats. Identities = 52/276 (18%), Positives = 103/276 (37%), Gaps = 31/276 (11%) Query: 84 WGSLA-VNSRISFESYFDQIIRKSGDF---DYRKITTKHI---RSGVESRKHTPSSAIQF 136 + +L +R ++++ G D+R++T H+ R+ +E R ++ + Sbjct: 33 FANLDNRRTRRAYQNDLTDFSSFIGLASADDFRQVTRSHVLAWRADLEQRGLAGATIRRK 92 Query: 137 LTSMRVLFKWAVRQE-YVAINPCLSVERPKRKT-EGIRPWTKED-----MQQFKSFWSEG 189 L ++ LF + + NP V+RP+ +T EG P + ++ + +G Sbjct: 93 LAALASLFDYLLENNAVAGGNPVHGVKRPRIETNEGKTPALGDHQAKQLLEAPDTETLKG 152 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTII-TVELPDGFMKLL- 245 + R LLY GLR ++ + L + I ++ G+ I + L + + Sbjct: 153 LRDRAILAVLLYHGLRREEAAQLHTHDLQERRGIKHLRVHGKGSKIRFLPLHPVAAERIY 212 Query: 246 ---------AMTPIGKETFFI-NNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKF 292 A P + A +A A KAG+ + HG+R Sbjct: 213 AYLEQDSERAAKPGPLFRSLRGTTTGAAITANGIYSVVEAYAKKAGIVVEHLGVHGLRAT 272 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 +AT + + A ++ G + Y + R Sbjct: 273 AATNALEHDADIAKVQMWLGHANISTTRLYDRRGQR 308 >gi|306827181|ref|ZP_07460471.1| integrase [Streptococcus pyogenes ATCC 10782] gi|304430637|gb|EFM33656.1| integrase [Streptococcus pyogenes ATCC 10782] Length = 362 Score = 107 bits (266), Expect = 4e-21, Method: Composition-based stats. Identities = 49/302 (16%), Positives = 95/302 (31%), Gaps = 27/302 (8%) Query: 48 MSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG 107 +A + ++ P+ T L ++ K + + I+ K Sbjct: 40 QAARETLISLQAELDKPKSS-MTFGALTDQWLKEYEKTVQGSTYLKTERNINKHILPKLD 98 Query: 108 DFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167 I I+ E + + L +R + AVR Y+ NP L + PK K Sbjct: 99 KVKIGDINPLLIQRLTEEWCNDLKYGGKILGLVRNILNLAVRYGYINNNPALPITPPKIK 158 Query: 168 TEG---IRPWTKEDMQQFKSFWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222 + +T + ++QF + F L ++G+R + L N Sbjct: 159 RKRKMNNNFYTLDQLKQFLELVEKTDNIEKIALFRLLAFTGIRKGELLALTWDDLNGNTL 218 Query: 223 SIKTQKTGTIITVEL------------------PDGFMKLLAMTPIGKETFFINNDKQKM 264 SI T T + +E+ + ++L P F + M Sbjct: 219 SINKAVTRTQVGLEIDVTKTKSSDRLISLDDETLEILLELHETFPTSTLMF-QSESGGIM 277 Query: 265 NATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TY 322 + W + + + HG R A++ ++G + ++ G + Y Sbjct: 278 TPSLPRKWLLQIIKGTDLPQITIHGFRHTHASLLFESGLSLKQVQHRLGHGDLQTTMNVY 337 Query: 323 TK 324 T Sbjct: 338 TH 339 >gi|147678470|ref|YP_001212685.1| integrase [Pelotomaculum thermopropionicum SI] gi|146274567|dbj|BAF60316.1| integrase [Pelotomaculum thermopropionicum SI] Length = 314 Score = 107 bits (266), Expect = 4e-21, Method: Composition-based stats. Identities = 37/282 (13%), Positives = 90/282 (31%), Gaps = 17/282 (6%) Query: 56 PKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT 115 K++ ++ P T + + + LA + + + Q + Y Sbjct: 2 AKKKVATVRKEVPDTWQEALQGFLFWKQAQGLAERTLTDYRKHVSQFFNRHP-KAYNSKN 60 Query: 116 TKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175 K ++ P++ L +++ F W +++ NP +R K + + Sbjct: 61 LKSAVLEYMAQPVKPATFNLRLVNLKAFFDWCIQEGIFTDNPLAGFKRRKAEGRVVNI-E 119 Query: 176 KEDMQQFKSFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI----KTQ 227 +E + + + + G + L +G+R ++ V + + + Sbjct: 120 EEKLARLLTLPNKETFAGLRDYALLLLTLDTGIRPKEAFSLLVDDINLRSLEVCIRSEIA 179 Query: 228 KTGTIITVELPD-------GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA 280 KT T T+ + ++ F +++ KM ++ + + + Sbjct: 180 KTRTTRTLPISPVTAQVIRELLQSRHPAWKNSTPVFCSSEGGKMTDLKWGDRLEVYSKQL 239 Query: 281 GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 GV + +R A G L G + + Y Sbjct: 240 GVWIRPYDLRHAFALQFLRNGGQPFALQRILGHTDLTMTKRY 281 >gi|163869253|ref|YP_001610509.1| site-specific tyrosine recombinase XerC [Bartonella tribocorum CIP 105476] gi|161018956|emb|CAK02514.1| integrase/recombinase XerC [Bartonella tribocorum CIP 105476] Length = 322 Score = 107 bits (266), Expect = 4e-21, Method: Composition-based stats. Identities = 36/269 (13%), Positives = 79/269 (29%), Gaps = 29/269 (10%) Query: 85 GSLAVNSRISFESYFDQ----IIRKSGDFD----YRKITTKHIRSGVESRKH---TPSSA 133 ++ + ++E Q + + G + +R+ + R+ + S Sbjct: 37 RRMSAQTAQAYERDTRQFLFFLCQHLGQAPTLNDLAHLRVSDLRAYLAYRRTNNVSARSL 96 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE-------DMQQFKSFW 186 + + +R FK+ R+ V + ++ PK +P + Q ++ Sbjct: 97 SRGVAGIRSFFKYLSREGIVNVPAAQLIKSPKHPKSLPKPLAIQSALHIVKQENQLENEP 156 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQKTGTIITVELP----DG 240 ++ L G+R S++ + + T K V L + Sbjct: 157 WINARNAAVLMLLYGCGMRISEALSLTPEQFSDPEKTSLFITGKGRKTRLVPLIKIVYEA 216 Query: 241 FMKLLAMTP---IGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSAT 295 L P + F + + G+ + H +R AT Sbjct: 217 VQNYLKCCPYPLRDNQPLFRGARGGPLQPAIIQKTVRNLRASLGLPETATPHTLRHSFAT 276 Query: 296 ISADAGATAHELMATYGWKTVDQAETYTK 324 G + G ++ +TYT Sbjct: 277 HLLSRGGDLRTIQELLGHASLSTTQTYTH 305 >gi|126728048|ref|ZP_01743864.1| probable integrase protein [Sagittula stellata E-37] gi|126711013|gb|EBA10063.1| probable integrase protein [Sagittula stellata E-37] Length = 384 Score = 107 bits (266), Expect = 4e-21, Method: Composition-based stats. Identities = 54/341 (15%), Positives = 107/341 (31%), Gaps = 24/341 (7%) Query: 17 RHGKIIYYFRKGHGRRIRLPYPH--ESTFIPA-----YMSALTGSTPKREYINSPRKKPT 69 R G ++ Y RRI L + +A G P E +K Sbjct: 38 RKGYVVQYRAGRRSRRISLGPSTVLTCEQARNRAISIFAAARNGEDPAAERDA--GRKAI 95 Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESRKH 128 T+K L + K + ++ + ++ I+ G IT + +H Sbjct: 96 TVKELAERFDKEHIAIRVKASTAKEYRRNLERFILPALGQLTVTGITRADVAKFHHDLRH 155 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVA--INPCLSVERPKRKTEGIRPWTKEDM----QQF 182 P A + L + +F A NP + + + R + ++ + Sbjct: 156 IPYQANRRLEVVSKMFGLAEMWGLRPDGTNPRKHIRKYPEEKRE-RFLSAAELRRIGEVL 214 Query: 183 KSFWSEG---SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVEL 237 + +EG LA L+ +G R ++ H+ + + K+G + Sbjct: 215 REMEAEGIELPSAILAARLLILTGCRLNEIMTLKWAHVDLAERVLRLPDSKSGAKVVHLG 274 Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATI 296 L I + + I + +++ +AGV + H +R A+ Sbjct: 275 QPVVDLLRDAQHIDENPWVITGILPGKRLSDLQPFWQRVRARAGVKDVRIHDLRHTFAST 334 Query: 297 SADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNS 336 + +G + G V Y A+ +R+ Sbjct: 335 AVASGQGLPMIGKLLGHTQVQTTARYAHLAAEPVRMAADAV 375 >gi|27817681|emb|CAD61108.1| putative site specific recombinase [Cupriavidus oxalaticus] Length = 402 Score = 107 bits (266), Expect = 4e-21, Method: Composition-based stats. Identities = 60/329 (18%), Positives = 109/329 (33%), Gaps = 32/329 (9%) Query: 45 PAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-II 103 +++ + + RK P T+ L ++ + +++ +E + I+ Sbjct: 76 QEWLAEVRRGGDPGAAKTAARKAP-TVAELCVKFMEDHSKQRNKPSTQAGYEKCIKRNIV 134 Query: 104 RKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVA--INPCLSV 161 G + +T I ++ H P+ A + + MR +F A Y NPC V Sbjct: 135 PMLGRMKVQDVTRPDIAGTMKKMAHKPADANRTFSVMRKMFNLAEVWGYRPDGTNPCRHV 194 Query: 162 ERPKRKTEGIRPWTKEDMQQFKSFWS-------------EGSQPRLAFEFLLYSGLRCSD 208 + + E+M + + RL FEF R S+ Sbjct: 195 PM-YPNGKATHLISDEEMGKLFRYLDYLETDGLGLDHAVLPLAIRLQFEFA----GRRSE 249 Query: 209 SCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFI----NNDKQ 262 + N KTG + L + +LL + + N+ Q Sbjct: 250 IVTLQWDWVDLENRRVVWPDSKTGGMSK-PLSEEAYRLLCTALRQDDCPHVFPSPNHPGQ 308 Query: 263 KMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321 + ++ + +AGV+ HG+R SAT A++G MA KTV Sbjct: 309 HLTTGEYYGGWTRILKRAGVSHVGTHGIRHRSATDIANSGIPVKVGMALTAHKTVAMFMR 368 Query: 322 YTKGADR--IRLGIKNSRRISSVVDSDDP 348 Y D+ + R + + P Sbjct: 369 YVHTEDKPVREAAELVANRRKKITGAHRP 397 >gi|268611535|ref|ZP_06145262.1| integrase family protein [Ruminococcus flavefaciens FD-1] Length = 339 Score = 106 bits (265), Expect = 4e-21, Method: Composition-based stats. Identities = 61/336 (18%), Positives = 118/336 (35%), Gaps = 45/336 (13%) Query: 46 AYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIR 104 YM +LT S PK + TL+ + ++ ++ ++ SY + I R Sbjct: 10 EYMRSLTPSEPKE-------IQKFTLREWNERWLNIYC-KAIKTTTKEAYISYTENHINR 61 Query: 105 KSGDFDYRKITTKHIRSGVES--------RKHTPSSAIQFLTSMRVLFKWAVRQEYVAIN 156 GD + K++ + ++ + S + +P S + AV Y+ N Sbjct: 62 VLGDIELCKLSREDVQLFLNSLSLGIGLEKALSPKSIKNIHGILHKSLDVAVDNGYILAN 121 Query: 157 PCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQ- 215 P + PK K + + E++++F +G Q F+ L++G+R + Sbjct: 122 PAKKNDLPKIKKSEVHALSVEEIKKFL-IAIKGCQMEYLFKITLFTGMRAGEIMGLTWDC 180 Query: 216 -HLQNNIFSIKTQ-------------------KTGTIITVELPDGFMKLLAMTPIGKET- 254 + + S+ Q K G + P M +L K + Sbjct: 181 INFEEGYISLYRQLVRIKNPKSDNYYYTFSSLKNGRSRRLYPPMFVMNMLFKMKEKKTSD 240 Query: 255 -FFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYG 312 F N++ + K K G+ + H +R ATIS + L G Sbjct: 241 FVFCNSENNHFTHSAIYNSLKRITGKIGITDFRFHDLRHTYATISIRSDVDTMTLKENMG 300 Query: 313 WKTVD-QAETYTKGADRIRLGIKNSRRISSVVDSDD 347 + + Y DR R+ ++ + +I + + Sbjct: 301 HHSAAFTLDVYGH-CDR-RMKLEGTSKIDRFITDNF 334 >gi|119385813|ref|YP_916868.1| phage integrase family protein [Paracoccus denitrificans PD1222] gi|119376408|gb|ABL71172.1| phage integrase family protein [Paracoccus denitrificans PD1222] Length = 384 Score = 106 bits (265), Expect = 4e-21, Method: Composition-based stats. Identities = 55/343 (16%), Positives = 110/343 (32%), Gaps = 28/343 (8%) Query: 17 RHGKIIYYFRKGHGRRIRLPYPH--ESTFIPA-----YMSALTGSTPKREYINSPRKKPT 69 R G ++ Y RRI L +A G P E +K Sbjct: 38 RKGYVVQYRAGRRSRRISLGPATVLTCEQARNRAISIVAAARNGEDPAAERDA--GRKTI 95 Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESRKH 128 T++ L + + + ++ + + I+ G IT + +H Sbjct: 96 TVRELAERFDREHIAIRVKASTAGEYRRNLRRFILPALGQLTVTGITRADVAKFHHDLRH 155 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVA--INPCLSVERPKRKTEGIRPWTKEDM----QQF 182 P A + L + +F +A NP + + + R + ++ + Sbjct: 156 IPYQANRCLEVVSKMFGYAEMWGLRPDGTNPRKHIRKYPEEKRE-RFLSAAELRRIGEVL 214 Query: 183 KSFWSEG---SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVEL 237 + +EG + LA L+ +G R ++ H+ + KTG I V L Sbjct: 215 REMETEGIELTSAILAARLLILTGCRLNEIMTLQWDHVDLEGRALRLPDSKTGAKI-VHL 273 Query: 238 PDGFMKLLAMTPIGKETFFI---NNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSA 294 ++LL P K ++ ++++ W + +A + H +R A Sbjct: 274 GQPVVELLRDAPRIKGNPWVIPGTLPGKRLS-DLQPFWQRVRARAGVKDVRIHDLRHTFA 332 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNS 336 + + AG + G Y A+ +++ Sbjct: 333 STAVAAGQGLPMIGKLLGHTQAQTTARYAHLAAEPVKMAADAV 375 >gi|229193382|ref|ZP_04320331.1| Site-specific recombinase, phage integrase [Bacillus cereus ATCC 10876] gi|228590096|gb|EEK47966.1| Site-specific recombinase, phage integrase [Bacillus cereus ATCC 10876] Length = 327 Score = 106 bits (265), Expect = 4e-21, Method: Composition-based stats. Identities = 39/298 (13%), Positives = 99/298 (33%), Gaps = 22/298 (7%) Query: 49 SALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD 108 + PK E + + ++ I + A + + + ++ ++ Sbjct: 9 RIVKRRLPKVELLKVDKTDSLEVEQTIKIFSHIAKQEGMRERTISDYAKFYRYFTKEVEV 68 Query: 109 FDYRKITTKH---IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK 165 D RK+ H + + +P + L+ ++ LF+ + EY+ NP ++ + + Sbjct: 69 TDLRKMNADHIGLYIDSLLEKGLSPVTVNIRLSGLKSLFRRLEKHEYIKENPAVNFSKLR 128 Query: 166 RKTEGIRPWTKEDMQQFKSFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--N 219 I + +++ G + +A +L+ G+R ++ + + N Sbjct: 129 TDESKIYTFNNSQIKRLFRVVDTTSYAGFRDYVAMLLMLHCGMRVNEVAALEINDIDFDN 188 Query: 220 NIFSIKTQKTGTIIT--VELPDGFMKLLAMTPIGKE-------TFFINNDKQKMNATQFS 270 + + K + + + M + F+ D ++++ Sbjct: 189 GVILLAGAKNKNRRSRSIPMSKRIMGEIKQLITESMDYFEEVKHVFLTQDGRRLDNDIIR 248 Query: 271 IWFKAKATKAGVNK----SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 +G+ + S H +R A G + + LM G K + Y + Sbjct: 249 KRMYTYGRLSGLYRECRVSPHSLRHTFACNYLRDGGSVNALMHILGHKDIASTMRYVR 306 >gi|104784270|ref|YP_610768.1| site-specific tyrosine recombinase XerC [Pseudomonas entomophila L48] gi|123380751|sp|Q1I301|XERC_PSEE4 RecName: Full=Tyrosine recombinase xerC gi|95113257|emb|CAK17985.1| site-specific tyrosine recombinase, integrase family [Pseudomonas entomophila L48] Length = 299 Score = 106 bits (265), Expect = 4e-21, Method: Composition-based stats. Identities = 35/259 (13%), Positives = 86/259 (33%), Gaps = 19/259 (7%) Query: 85 GSLAVNSRISFESYFDQIIR---KSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFLT 138 ++ ++ +++ +++I G + + + +R V + + S + L+ Sbjct: 16 RQVSGHTLLAYRRDLEKVIEFCNNQGIAGWDALQVQQLRQLVARQHHHGQSSRSLARLLS 75 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW-TKEDMQQFKSFWS---EGSQPRL 194 ++R L+++ R+ +P + PK + + T +Q + + Sbjct: 76 AVRGLYRYLNREGLCQHDPANGLAPPKGERRLPKTLDTDRALQLLDGGVDDDFIARRDQA 135 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLLA------- 246 E SGLR S+ ++HL K G + + + L Sbjct: 136 ILELFYSSGLRLSELAGLDLEHLDLTGGLVQVLGKGGKSRVLPVGRKACEALQEWFRLRG 195 Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAK-ATKAGVNKSAHGVRKFSATISADAGATAH 305 + FI +++ + K + G + H +R A+ ++ Sbjct: 196 IAAPRDGAVFITRQGNRLSTRAIQMRVKTFGERELGQHLHPHMLRHSFASHLLESSQDLR 255 Query: 306 ELMATYGWKTVDQAETYTK 324 + G + + YT Sbjct: 256 AVQEMLGHADISTTQIYTH 274 >gi|324113623|gb|EGC07598.1| phage integrase [Escherichia fergusonii B253] Length = 231 Score = 106 bits (265), Expect = 4e-21, Method: Composition-based stats. Identities = 39/216 (18%), Positives = 72/216 (33%), Gaps = 19/216 (8%) Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 +SA +++ +F+ A+ + +VA NP + K + R E + + + Sbjct: 10 KAASAKLIRSTLVDVFREAIAEGHVATNPATATRTAKSEVRRSRLTANEYVAIYHAAEPL 69 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP---------- 238 + RLA + + +G R D CR + +N I+ KTG + + L Sbjct: 70 PTWLRLAMDLAVVTGQRVGDLCRMKWSDINDNHLHIEQSKTGAKLAIPLTLTIDALNISL 129 Query: 239 -DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-----NKSAHGVRKF 292 D K ET + ++ S +F +G+ + H +R Sbjct: 130 ADTLQK--CREASSSETIIASKHHDPLSPKTVSKYFTKARNASGLSFDGDPPTFHELR-S 186 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 + G K+ A Y R Sbjct: 187 LSARLYRNQIGDKFAQRLLGHKSDSMAARYRDSRGR 222 >gi|315121780|ref|YP_004062269.1| site-specific tyrosine recombinase XerD [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495182|gb|ADR51781.1| site-specific tyrosine recombinase XerD [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 318 Score = 106 bits (265), Expect = 4e-21, Method: Composition-based stats. Identities = 41/270 (15%), Positives = 87/270 (32%), Gaps = 30/270 (11%) Query: 85 GSLAVNSRISFESYFDQI-----IRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139 + +VN+ S++S +++ + + RK SS + +++ Sbjct: 26 RAASVNTLTSYKSDLEEVQLFLDDDDLLLSKASSDNLIAYLNHLSQRKLKASSQRRKISA 85 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS--------- 190 +R + + + NP +++ PK+ + K + S Sbjct: 86 IRQFYNFLCCEGLRKDNPSETLQFPKKNHTLPKTLHKNAIADLLKQAKIESEDPSPGQWK 145 Query: 191 --QPRLAFEFLLYSGLRCSDSCRA--GVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246 + L E L +G+R S+ +L+ I IK + + P L Sbjct: 146 RIRMFLLIELLYSTGMRVSELVTLSSHTLNLEERIMIIKGKGNRERFVIFSPSSLCALQM 205 Query: 247 MTP-------IGKETFFI--NNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSA 294 + + ++ F+ K A++A + N S H +R A Sbjct: 206 YKKMCSTMEMTKNSPWLFPSSTKTGHLSRQVFARDLKELASRASIQTKNISPHIIRHAFA 265 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTK 324 + + GA + G + + YT Sbjct: 266 SHLLEGGADLRTIQILLGHIDISTTQIYTH 295 >gi|229004126|ref|ZP_04161927.1| integrase/recombinase [Bacillus mycoides Rock1-4] gi|228756987|gb|EEM06231.1| integrase/recombinase [Bacillus mycoides Rock1-4] Length = 316 Score = 106 bits (265), Expect = 4e-21, Method: Composition-based stats. Identities = 42/282 (14%), Positives = 95/282 (33%), Gaps = 31/282 (10%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSGVESRK 127 L++ + E+++ + +L+ + + + ++ + D R I +++ + K Sbjct: 13 LRFAMKEFQEEKEYNNLSHRTIEVYMATLNEFRNFCSEQEIVDLRDIREATVKAYLRYCK 72 Query: 128 HTPSSA----IQFLTSMRVLFKWAVRQEYVAI--NPCLSVERPKRKTEGIRPWTKEDMQQ 181 T + L +R+ F + +E + NP ++ K T+ I +T +QQ Sbjct: 73 KTRGNGVVTCNSKLHHLRIFFNYWQNEEVIEHKDNPVRKLKPAKEDTK-IEVFTDYHIQQ 131 Query: 182 FKSFWSE---------GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN-NIFSIKTQKTGT 231 ++ G + LL +G+R + + + N + K Sbjct: 132 MLRYYRRLKTRDKSFFGYRDHAIIVLLLSTGIRLGELVNIQWKDIDLVNQTVVLFGKARR 191 Query: 232 IITVELPDGFMKLLA--MTPIGKE------TFFINNDKQKMNATQFSIWFKAKATK---A 280 ++ + D K + + KE F + + +++ + F+ + Sbjct: 192 QQSIPITDKLTKEICEWRIFVEKELGSLPQYLFTSREGKQLTPNAVKLIFQRLSKVMNFK 251 Query: 281 GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 V S H R A G L + E Y Sbjct: 252 DVRLSCHTFRHSFAHRCIMQGMDVFTLQKLLRHSNLRMTERY 293 >gi|4186110|emb|CAA71790.1| putative integrase [Cupriavidus necator] Length = 401 Score = 106 bits (265), Expect = 4e-21, Method: Composition-based stats. Identities = 60/329 (18%), Positives = 109/329 (33%), Gaps = 32/329 (9%) Query: 45 PAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-II 103 +++ + + RK P T+ L ++ + +++ +E + I+ Sbjct: 75 QEWLAEVRRGGDPGAAKTAARKAP-TVAELCVKFMEDHSKQRNKPSTQAGYEKCIKRNIV 133 Query: 104 RKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVA--INPCLSV 161 G + +T I ++ H P+ A + + MR +F A Y NPC V Sbjct: 134 PMLGRMKVQDVTRPDIAGTMKKMAHKPADANRTFSVMRKMFNLAEVWGYRPDGTNPCRHV 193 Query: 162 ERPKRKTEGIRPWTKEDMQQFKSFWS-------------EGSQPRLAFEFLLYSGLRCSD 208 + + E+M + + RL FEF R S+ Sbjct: 194 PM-YPNGKATHLISDEEMGKLFRYLDYLETDGLGLDHAVLPLAIRLQFEFA----GRRSE 248 Query: 209 SCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFI----NNDKQ 262 + N KTG + L + +LL + + N+ Q Sbjct: 249 IVTLQWDWVDLENRRVVWPDSKTGGMSK-PLSEEAYRLLCTALRQDDCPHVFPSPNHPGQ 307 Query: 263 KMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321 + ++ + +AGV+ HG+R SAT A++G MA KTV Sbjct: 308 HLTTGEYYGGWTRILKRAGVSHVGTHGIRHRSATDIANSGIPVKVGMALTAHKTVAMFMR 367 Query: 322 YTKGADR--IRLGIKNSRRISSVVDSDDP 348 Y D+ + R + + P Sbjct: 368 YVHTEDKPVREAAELVANRRKKITGAHRP 396 >gi|17544771|ref|NP_518173.1| site-specific tyrosine recombinase XerC [Ralstonia solanacearum GMI1000] gi|34222938|sp|Q8Y3C8|XERC1_RALSO RecName: Full=Tyrosine recombinase xerC 1 gi|17427060|emb|CAD13580.1| probable tyrosine recombinase xerc 1 protein [Ralstonia solanacearum GMI1000] Length = 329 Score = 106 bits (265), Expect = 4e-21, Method: Composition-based stats. Identities = 50/290 (17%), Positives = 92/290 (31%), Gaps = 42/290 (14%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQI----IRKSGDFDYRKITTKHIRSGVESR--- 126 I Y + + L+ ++ S+ + R + D ++ HIR + Sbjct: 20 IGAYLDALKFERKLSQHTLASYARELAVLQQLGARFAAGIDLMRLQPHHIRRMMAQLHGG 79 Query: 127 KHTPSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQ 181 + S + L++ R ++W A+R V NP + PK + + E M+Q Sbjct: 80 GLSGRSIARALSAWRGWYQWLALRDAAVTANPVDGIRAPKSPKRLPKALSVEQAVALMEQ 139 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN------IFSIKTQ------KT 229 E + R E GLR S+ ++H Q ++ + K Sbjct: 140 LPGDDPEAVRDRAVNELFYSCGLRLSELVGLDLRHAQAGDYASASWLDLEAREVTVLGKG 199 Query: 230 GTIITVEL--------------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKA 275 TV + + P F++ +++ Q K Sbjct: 200 NKRRTVPVGSKAAEALAAWLAVRPQLAQ-PDAAPEDAHALFLSARGKRLAQRQIQTRMKR 258 Query: 276 KATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 A AGV H +R AT + + G ++ + YT Sbjct: 259 NAIAAGVPADVHPHVLRHSFATHMLQSSGDLRAVQELLGHASIASTQVYT 308 >gi|170693977|ref|ZP_02885133.1| tyrosine recombinase XerC [Burkholderia graminis C4D1M] gi|170141049|gb|EDT09221.1| tyrosine recombinase XerC [Burkholderia graminis C4D1M] Length = 307 Score = 106 bits (265), Expect = 4e-21, Method: Composition-based stats. Identities = 47/291 (16%), Positives = 90/291 (30%), Gaps = 33/291 (11%) Query: 73 WLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KH 128 I+ Y + H L+ ++ + +Q+ + +T +R V Sbjct: 5 DFIAAYLSNLEHERRLSAHTLRGYTHELEQLRLLAKGRPLESLTAVDVRGAVSRAHAGGL 64 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS- 187 T S L++ R ++W + + NP +V PK+ + + +D + Sbjct: 65 TARSISHRLSAWRAFYRWLAGRIDLPANPVATVRAPKQPKALPKALSVDDANRLMESPPA 124 Query: 188 ---EGSQPRLAFEFLLYSGLRCSDSCRA-------------GVQHLQNNIFSIKTQKTGT 231 EG + E SGLR S+ G L + + K Sbjct: 125 ASAEGLRDHAMLELFYSSGLRLSELVGLDARFADADGYRSAGWLKLDSAEVEV-LGKGKR 183 Query: 232 IITVELPDGFMKLLAMTPIGKE--------TFFINNDKQKMNATQFSIWFKAKATKAGVN 283 V + + L ++ F++ +++ K A AG+ Sbjct: 184 RRIVPVGSKALTALNAWLAVRDQMVKHDPHPLFLSARGNRLSPNVVRERVKRAALLAGIP 243 Query: 284 K--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 H +R AT + + G ++ + YT G D L Sbjct: 244 ANVHPHVLRHSFATHVLQSSGDLRAVQELLGHASITATQVYT-GLDFQHLA 293 >gi|167770641|ref|ZP_02442694.1| hypothetical protein ANACOL_01987 [Anaerotruncus colihominis DSM 17241] gi|167667236|gb|EDS11366.1| hypothetical protein ANACOL_01987 [Anaerotruncus colihominis DSM 17241] Length = 339 Score = 106 bits (265), Expect = 4e-21, Method: Composition-based stats. Identities = 48/236 (20%), Positives = 90/236 (38%), Gaps = 17/236 (7%) Query: 125 SRKHTPSSAIQFLTSMRVLFKWA-VRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 R++ + + ++S+R F + V+ + INP ++E P K R T E+ + Sbjct: 90 ERENNAKTRSRKVSSLRSFFNYLTVKSGLLKINPIENLEVPSVKKSVPRYLTLEECLELL 149 Query: 184 SFWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241 + S R L G+R S+ +Q ++ + + K V + D Sbjct: 150 THIESSSYERDFCIATLFLNCGMRLSELVGINLQDIRGDTIRL-LGKGNKERIVYINDAC 208 Query: 242 MKLL------AMTPIG---KETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGV 289 + L MTP ++ F+++ +++ + +AG+ S H + Sbjct: 209 KRALTTYLAVRMTPANVKYRDALFLSSRGTRISPRRVEQIIARCLEQAGLAGQGYSPHKL 268 Query: 290 RKFSATISADAGA-TAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344 R +AT+ G L G ++ E YT +DR S +SSV Sbjct: 269 RHTAATLMYQHGGVDIRVLKEILGHASLSTTEIYTHISDRQMEKAAKSSPLSSVAP 324 >gi|68249255|ref|YP_248367.1| site-specific tyrosine recombinase XerC [Haemophilus influenzae 86-028NP] gi|319775473|ref|YP_004137961.1| site-specific tyrosine recombinase [Haemophilus influenzae F3047] gi|81336341|sp|Q4QMP0|XERC_HAEI8 RecName: Full=Tyrosine recombinase xerC gi|68057454|gb|AAX87707.1| site-specific recombinase XerC [Haemophilus influenzae 86-028NP] gi|317450064|emb|CBY86278.1| site-specific tyrosine recombinase [Haemophilus influenzae F3047] Length = 295 Score = 106 bits (265), Expect = 4e-21, Method: Composition-based stats. Identities = 39/260 (15%), Positives = 88/260 (33%), Gaps = 21/260 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITT------KHIRSGVESRKHTPSSAIQFLT 138 ++ ++ +++ D I+ D T + I + + + S L+ Sbjct: 16 RQMSPHTITNYQHQLDATIKILAQQDIHSWTQVTPSVVRFILAESKKQGLKEKSLALRLS 75 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS---FWSEGSQPRLA 195 ++R + V+Q + +NP + PK+ + E +QQ + + R Sbjct: 76 ALRRFLSFLVQQGELKVNPATGISAPKQGWHLPKNMDGEQIQQLLANDSKEPIDIRDRAI 135 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------ELPDGFMKLLA 246 E + SGLR S+ + + + ++ G V + + Sbjct: 136 LELMYSSGLRLSELQGLDLNSINTRVREVRVIGKGNKERVVPFGRYASHAIQEWLKVRAL 195 Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATA 304 P E F++ +++ + + G+N + H +R AT +A + Sbjct: 196 FNP-KDEALFVSQLGNRISHRAIQKRLETWGIRQGLNSHLNPHKLRHSFATHMLEASSDL 254 Query: 305 HELMATYGWKTVDQAETYTK 324 + G + + YT Sbjct: 255 RAVQELLGHSNLSTTQIYTH 274 >gi|166032543|ref|ZP_02235372.1| hypothetical protein DORFOR_02258 [Dorea formicigenerans ATCC 27755] gi|166026900|gb|EDR45657.1| hypothetical protein DORFOR_02258 [Dorea formicigenerans ATCC 27755] Length = 400 Score = 106 bits (265), Expect = 4e-21, Method: Composition-based stats. Identities = 59/369 (15%), Positives = 116/369 (31%), Gaps = 68/369 (18%) Query: 19 GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEY 78 G+ I F G+R L + A+ + E+ + + TL + Sbjct: 20 GRYIARFTSKTGKRKTLYDFKLNELKRKLREAVY----EDEHGLNGNGESITLNAWYVTW 75 Query: 79 RKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTP---SSAI 134 + ++ + + SY++ ++ G + I T H++ + + + Sbjct: 76 TELYKKKTVKMTTIYKNHSYYNSRVKNSIGKMYLQDIKTYHVQKFLNDLIDSGLAHGTVS 135 Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194 + +F AV EY+ NPC+ VE PK + R T+E+ ++F +F S Sbjct: 136 NIRFMLSDMFDKAVLSEYIRKNPCIGVEMPKEVKKERRVLTREEQEKFFTFASSYIHI-N 194 Query: 195 AFEFLLYSGLRCSDSCRAGVQH----------------------LQNNIFSIKTQKT-GT 231 +F + +G R + + ++ + F T KT + Sbjct: 195 VLKFAVTTGCRIGEVLGLKWEDCDFGKREITINKTIHYSKASSPVEGSKFFYTTAKTISS 254 Query: 232 IITVELPDGFMKLLAMTPIGK------------------ETFFINNDKQKMNATQFSIWF 273 + + D ++L I + F +D + + Sbjct: 255 NRVIPMTDEVYEILQNQKIKQTEQKMWKRSIWKQHKEFQNLVFTCSDGSPVYYYNVNSAI 314 Query: 274 KAKATK--------AGVNK---------SAHGVRKFSATISADAGATAHELMATYGWKTV 316 K K A K + H +R AT + G + G T+ Sbjct: 315 KDYVAKINVIEIELAKEEKREPKIFELFTCHTLRHTYATRCYENGVDQQVVQKLLGHSTL 374 Query: 317 DQ-AETYTK 324 + YT Sbjct: 375 AMTTDLYTH 383 >gi|330430524|gb|AEC21858.1| site-specific tyrosine recombinase XerC [Pusillimonas sp. T7-7] Length = 316 Score = 106 bits (265), Expect = 4e-21, Method: Composition-based stats. Identities = 44/277 (15%), Positives = 85/277 (30%), Gaps = 37/277 (13%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES---RKHTPSSAIQFLTSMR 141 ++++ + +I+ D T HIR V + P S + L + R Sbjct: 19 RRYSIHTLSGYRQDLHHLIQCHADLKLDHCTESHIRQAVARLHGQGLQPRSLARALAAWR 78 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS-------QPRL 194 F+W Q + NP V PK + + E Q + + + Sbjct: 79 GFFQWWAPQAGMESNPVAGVRAPKIPRSLPKALSVEQTQVLLDRPQLPAPDTAIDCRDQA 138 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQ------------NNIFSIKTQKTGTIITVELPDGFM 242 FE L SGLR ++ ++ + + +I K G V L + Sbjct: 139 MFEVLYSSGLRLAELVSLDWRYARTGGYESQSWVQLDEQEAIVKGKGGKTRNVPLGGKAI 198 Query: 243 KLLAMT-------------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAH 287 + P F+ ++++ + AT G+ + H Sbjct: 199 AAIQTWLQKRDQLLGGSSDPDTAAALFLGARGKRISPRVVQLQLNKLATLVGLPVHVHPH 258 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 +R A+ + + G + + YT+ Sbjct: 259 SLRHSFASHMLQSAQDLRAVQELLGHANISTTQIYTR 295 >gi|50954349|ref|YP_061637.1| site-specific tyrosine recombinase XerD [Leifsonia xyli subsp. xyli str. CTCB07] gi|50950831|gb|AAT88532.1| integrase [Leifsonia xyli subsp. xyli str. CTCB07] Length = 301 Score = 106 bits (265), Expect = 4e-21, Method: Composition-based stats. Identities = 38/276 (13%), Positives = 88/276 (31%), Gaps = 27/276 (9%) Query: 75 ISEYRKSAH-WGSLAVNSRISFESYFD------QIIRKSGDFDYRKITTKHIRSGVESRK 127 + Y + L+ N+ ++ + + + T + +R Sbjct: 7 VDAYLRHVAIERGLSANTVAAYRRDLAVYAGWLAVEQVTQTAAVTPATVSAYLQHLATRG 66 Query: 128 HTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 +P +A + L+++R ++ + + V ++ + PK + + + + + Sbjct: 67 ESPLTASSLARMLSTVRSFHRFLLEEGRVTVDAAHDIRPPKLPSRLPKAIGVDQVAALLA 126 Query: 185 FWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240 + + E + +G R S++ V + + T K V L Sbjct: 127 ATDGDDLADLRDKALLELMYATGARVSEAVGLNVDDVIDTDVVRLTGKGAKQRIVPLGSY 186 Query: 241 FMK-----LLAMTPI------GKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAH 287 L+ P F+ +++ + +A A +A + S H Sbjct: 187 ARAAVSAYLVRARPTLSTRGRATPALFLGMRGARLSRQNVWLIIRAAADRADLTVEVSPH 246 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 +R AT GA + G +V + YT Sbjct: 247 ILRHSFATHLLAGGADVRVVQELLGHSSVATTQLYT 282 >gi|53804979|ref|YP_113355.1| integrase/recombinase XerC [Methylococcus capsulatus str. Bath] gi|53758740|gb|AAU93031.1| integrase/recombinase XerC [Methylococcus capsulatus str. Bath] Length = 304 Score = 106 bits (265), Expect = 4e-21, Method: Composition-based stats. Identities = 45/289 (15%), Positives = 98/289 (33%), Gaps = 25/289 (8%) Query: 67 KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSGV 123 P +L+ L +Y + ++ ++ + + IR+ V Sbjct: 2 APDSLEQL-DDYLDRLA-RRASRHTHAAYRRDLCAFHAYCDSVNLAGWADVDAARIRAYV 59 Query: 124 ESRKHT----PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179 +R H S + L ++R F +++ + +NP +V P+ R + + Sbjct: 60 GTRHHRGELSARSLQRLLAAIRGFFDDLLKKRLLDVNPARAVRPPRSGRRLPRLLDVDAV 119 Query: 180 QQFKSFWS---EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIIT 234 + ++ R +E SGLR S+ V + ++ K G Sbjct: 120 AGLLDAPADDRLETRDRAMWELFYSSGLRLSELVGLDVVDVDFGAGSVFVRKGKGGKARY 179 Query: 235 VELPDGFMKLLAM--------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS- 285 V + ++ + T G+ F++ +++ + + K G+++ Sbjct: 180 VPVGAKALEAIGAWLEARRVLTGAGQPALFLSRQGRRIAPRTVEMRLERWRAKLGLSERV 239 Query: 286 -AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 H +R A+ +A + G T+ + YT D RL Sbjct: 240 HPHMLRHSFASHMLEASGDLRAVQELLGHATLATTQIYTH-VDFQRLAA 287 >gi|94985803|ref|YP_605167.1| phage integrase [Deinococcus geothermalis DSM 11300] gi|94556084|gb|ABF45998.1| phage integrase [Deinococcus geothermalis DSM 11300] Length = 285 Score = 106 bits (265), Expect = 4e-21, Method: Composition-based stats. Identities = 38/256 (14%), Positives = 91/256 (35%), Gaps = 14/256 (5%) Query: 86 SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSSAIQFLTSMRVLF 144 + + ++ + + + + + + + + + H P++ + T++ Sbjct: 18 KRSPQTVRAYRADLRHLTTWLEETG-QVLNGEGLDAYFAAHLHWAPATRNRKQTALERFC 76 Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS-QPRLAFEFLLYSG 203 WA+++E + +P L +ERP R +E++++ + + L F + +G Sbjct: 77 HWALQRELLDRDPTLHLERPSLPPPHPRGLRREEIERIFAVIPAEQVRDALLFRLVFETG 136 Query: 204 LRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDG------FMKLLAMTPIGKETF 255 LR ++ V+ L + G+ L D + L Sbjct: 137 LRIGEALGVHVEDLDLTRGDEHLTVLGKGSRRRTVLLDDPKLVNMLRRYLRTLGYTHGPL 196 Query: 256 FI---NNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYG 312 F N + ++ A +AGV + H +R AT + G + + G Sbjct: 197 FQATKNGRGGPLRYQSVQERWQGYAERAGVTCTLHQLRHSHATELVNGGVSLATIRKRLG 256 Query: 313 WKTVDQAETYTKGADR 328 + + Y + +D+ Sbjct: 257 HQHIQTTLRYAEVSDQ 272 >gi|310764968|gb|ADP09918.1| site-specific tyrosine recombinase XerC [Erwinia sp. Ejp617] Length = 351 Score = 106 bits (265), Expect = 4e-21, Method: Composition-based stats. Identities = 46/289 (15%), Positives = 103/289 (35%), Gaps = 32/289 (11%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFE---SYFDQIIRKSGDFDYRKITTKHIRSGV--- 123 TL+ L + + + + F G +++ + S Sbjct: 20 TLRQLAESWLSHLAAAGRSPRTVQGYGERVRAFLAWCEPRGIRYAPQVSLAVLESYQRWL 79 Query: 124 ------ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI-RPWTK 176 + ++ +S + LT++R+LF+W +++ + NP + PK + + +++ Sbjct: 80 QGYRKADGKQLVVNSQLGVLTAIRMLFRWLLQRHVILYNPAELLALPKEERRLPAQVFSE 139 Query: 177 ED----MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTG 230 ++ +Q + G + R E L SG+R S+ + + + +++ K G Sbjct: 140 DETRRVLQSLDAGTPPGLRNRAILELLWSSGIRRSELAGLLLSDVDFTRGVVNVRRGKGG 199 Query: 231 TIITVE--------LPDGFMKLLAMTPI--GKETFFINNDKQKMNATQFSIWF-KAKATK 279 V L + FI++ + + +A + Sbjct: 200 KDRVVPVGHAALIWLGRYLQDVRPRLAQRFDSGHLFISHKGTGLAHGTLTAMAGRAIRSG 259 Query: 280 AGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 A + K+ H R AT + GA + A G + ++ + YT+ A Sbjct: 260 AHLKKAGACHIFRHSMATQMLENGADTRHIQAILGHEKLETTQIYTRVA 308 >gi|315648604|ref|ZP_07901701.1| integrase family protein [Paenibacillus vortex V453] gi|315275983|gb|EFU39331.1| integrase family protein [Paenibacillus vortex V453] Length = 305 Score = 106 bits (265), Expect = 5e-21, Method: Composition-based stats. Identities = 48/306 (15%), Positives = 100/306 (32%), Gaps = 32/306 (10%) Query: 58 REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF--------------DQII 103 RE + T++ I L + + S ++II Sbjct: 2 RETPGISEQGDQTIQDFIHALTTH---EDLNPKTLKEYASDLKHFIGWFETAYHQEEEII 58 Query: 104 RKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER 163 + D +T + + + P++ + L +++ F+WAV + + +P V+ Sbjct: 59 FRIEDVATPTLTRYR-EAAQKIMELKPATINRRLITLKRFFEWAVSESRIRRDPSKPVKL 117 Query: 164 PKRKTEGIRPWTKEDMQQFKSFWSEG--SQPRLAFEFLLYSGLRCSDSCRAGVQHL---- 217 + R T ++ + G + + + ++GLR + C + Sbjct: 118 VPEEKVSPRQMTDKEEAALVAAAEHGGSLRDQTILIVMFHTGLRSMEVCDLAPGDIQIGK 177 Query: 218 QNNIFSIKTQKTGTIITVELPD----GFMKLLAMTPIGKETFFIN-NDKQKMNATQFSIW 272 ++ ++++ K V L K LA P F + ++ Sbjct: 178 RSGQLTVRSGKRNKQREVPLNATCRVALEKYLAELPPHSPFLFPSEKTGDRLTERALRHL 237 Query: 273 FKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 + A + SAH +R + A+ H L G ++D Y K A R L Sbjct: 238 IQKYMKAARLEGLSAHDLRHRFGYVMAEN-TPLHRLAQIMGHDSLDTTMIYVK-ATRADL 295 Query: 332 GIKNSR 337 + + Sbjct: 296 QAEVEK 301 >gi|288556218|ref|YP_003428153.1| integrase family protein [Bacillus pseudofirmus OF4] gi|288547378|gb|ADC51261.1| integrase family protein [Bacillus pseudofirmus OF4] Length = 362 Score = 106 bits (265), Expect = 5e-21, Method: Composition-based stats. Identities = 53/324 (16%), Positives = 99/324 (30%), Gaps = 60/324 (18%) Query: 75 ISEYRKSAHWGSLAVNSRI----SFESYFDQIIRKSGD----------FDYRKITTKHIR 120 I +Y S + + + +F + R S D D+ +I I Sbjct: 39 IQQYLISRVSLGYSKQTIQRYIYDYHYFFHYVKRVSEDPSFQPAAVTLKDFLQIEKAAIE 98 Query: 121 SGVESRK----HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176 + + P + + +++++ LF + V++ NP L VERPK T Sbjct: 99 HYITYLSLEVENEPRTINRKISALQSLFDYLVKKGETTTNPVLGVERPKVGKRDPVFLTI 158 Query: 177 EDMQQFKSFWSEGS---------------QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NN 220 + Q + S + L+ SGLR S+ ++ Sbjct: 159 NEAQLLLKAVKDTSSLSFRQKKYAEKLLARDYAVIYLLISSGLRISELANVKMKDFDKEE 218 Query: 221 IFSIKTQKTGTIITVELP----DGFMKLLAMTPIGK------ETFFI------NNDKQKM 264 K ++ L D L PI + FI +++ Sbjct: 219 NILKVQGKGNKERSIPLSYETIDVLTYYLDSLPIKSRPKQSEDHLFIGYDFQSQEYTKQV 278 Query: 265 NATQFSIWFKAKATKAG--------VNKSAHGVRKFSATISADAGATAHELMATYGWKTV 316 + + + +A +AH +R AT G + + G ++V Sbjct: 279 TVSALQKMIQRQLHRAKQYAPSLQHKTITAHKLRHSFATALVAKGVDVLTVQSLLGHESV 338 Query: 317 DQAETYTKGADRIRLGIKNSRRIS 340 + Y D R + R+S Sbjct: 339 ATTQVYAHVQDDARK--EAITRLS 360 >gi|269795657|ref|YP_003315112.1| tyrosine recombinase XerC subunit [Sanguibacter keddieii DSM 10542] gi|269097842|gb|ACZ22278.1| tyrosine recombinase XerC subunit [Sanguibacter keddieii DSM 10542] Length = 310 Score = 106 bits (265), Expect = 5e-21, Method: Composition-based stats. Identities = 40/273 (14%), Positives = 82/273 (30%), Gaps = 27/273 (9%) Query: 85 GSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIRSGVESRKHT---PSSAIQFLT 138 L+ ++ ++ S + + G + +R + S+ + Sbjct: 28 RGLSEHTVRAYASDLAGLSSFAHQVGAGPLAAVGLDTLRGWLAQMAGRDLARSTVARRGA 87 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW--------SEGS 190 ++R + WAVR V +P + + P + Sbjct: 88 AVRAFYGWAVRSGRVGSDPSVRLGSPTVSKTLPTVLAVDSATALMETARTAAVDGDPAAL 147 Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTP 249 + E L +G+R + +Q + + S++ K V L Sbjct: 148 RAWACVELLYATGVRVGELVSLDLQDVDLDTRSVRVVGKGDKERVVPFGVPAATALRSWI 207 Query: 250 ----------IGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISA 298 G F+ Q+ Q + A V+ + H +R +AT Sbjct: 208 EDGRPGLERGSGATAVFLGQRGQRWGQRQVRETVHRLSAAASVDDVAPHDLRHSAATHLL 267 Query: 299 DAGATAHELMATYGWKTVDQAETYTK-GADRIR 330 + G+ + G T+ + YT A+R+R Sbjct: 268 NGGSDLRTVQEVLGHSTLSTTQRYTHVSAERLR 300 >gi|259909787|ref|YP_002650143.1| site-specific tyrosine recombinase XerC [Erwinia pyrifoliae Ep1/96] gi|224965409|emb|CAX56941.1| site-specific tyrosine recombinase [Erwinia pyrifoliae Ep1/96] Length = 351 Score = 106 bits (265), Expect = 5e-21, Method: Composition-based stats. Identities = 44/289 (15%), Positives = 99/289 (34%), Gaps = 32/289 (11%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFE---SYFDQIIRKSGDFDYRKITTKHIRSGVESR 126 TL+ L + + + + F G +++ + + Sbjct: 20 TLRQLAESWLAHLVVAGRSPRTVQGYRERVRAFLSWCEPRGITYAPQVSLAVLEAYQRWL 79 Query: 127 KHTPSSAIQ---------FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI-RPWTK 176 + + + LT++R+LF+W +++ + NP + PK + + +++ Sbjct: 80 QGYRRADGKQLVVNSQLGVLTAIRMLFRWLLQRHVILYNPAELLALPKEERRLPAQVFSE 139 Query: 177 ED----MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTG 230 + +Q + G + R E L SG+R S+ + + + +++ K G Sbjct: 140 AETRRVLQSLDAGTPPGLRNRAILELLWSSGIRRSELAGLLLSDVDFTRGVVNVRRGKGG 199 Query: 231 TIITVEL----PDGFMKLLA------MTPIGKETFFINNDKQKMNATQFSIWF-KAKATK 279 V + + L FI++ + + +A Sbjct: 200 KDRVVPVGHAALMWLGRYLKDVRPRLAQRFDSGHLFISHKGTGLAHGTLTAMAGRAIREG 259 Query: 280 AGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 A + K+ H R AT + GA + A G + ++ + YT+ A Sbjct: 260 AHLKKAGACHIFRHTMATQMLENGADTRHIQAILGHEKLETTQIYTRVA 308 >gi|190575908|ref|YP_001973753.1| site-specific tyrosine recombinase XerC [Stenotrophomonas maltophilia K279a] gi|190013830|emb|CAQ47468.1| putative integrase/recombinase [Stenotrophomonas maltophilia K279a] Length = 298 Score = 106 bits (265), Expect = 5e-21, Method: Composition-based stats. Identities = 33/255 (12%), Positives = 80/255 (31%), Gaps = 15/255 (5%) Query: 85 GSLAVNSRISFESYFDQII-----RKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139 ++ ++ ++ D + R + + R + S + L++ Sbjct: 15 RRMSAHTLDAYRRDLDALSVWAEPRGVAVEALDADALRQFVADEHRRGLSAKSLQRRLSA 74 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS---QPRLAF 196 R + W ++ + ++P +++ P+ + ++ Q EG + R Sbjct: 75 CRSFYAWLLKHGRIEVSPAATLKAPRAPRRLPQVLDADEAVQLVELEPEGELGRRDRALL 134 Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT-----VELPDGFMKLLAMTPIG 251 E SGLR S+ C + L + + G + A + G Sbjct: 135 ELFYSSGLRLSEVCALTWRDLDFDSGLVNVLGKGNRQRRVPFGRPAREALQAWRAESGGG 194 Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMA 309 + ++ I + A + G+ + H +R A+ ++ + Sbjct: 195 PASPVFPGRNGPISQRAVQIRIRQLAQRQGLFKHVHPHMLRHSFASHILESSGDLRGVQE 254 Query: 310 TYGWKTVDQAETYTK 324 G + + YT Sbjct: 255 LLGHADIATTQIYTH 269 >gi|268608348|ref|ZP_06142075.1| hypothetical protein RflaF_02473 [Ruminococcus flavefaciens FD-1] Length = 399 Score = 106 bits (265), Expect = 5e-21, Method: Composition-based stats. Identities = 54/323 (16%), Positives = 110/323 (34%), Gaps = 49/323 (15%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVES---- 125 + ++ + +L N+ ++ G KIT++HI+ + Sbjct: 69 FQDFAEQWFEEYAKLNLR-NTSYERMKQLTVRVYPAIGHLRLDKITSRHIQQFINDLALN 127 Query: 126 -------RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 R + +A+ L+ + +F +AV+ E + NPC V PK + + +T E+ Sbjct: 128 GKSLKNGRPLSRKTAVHHLSFISDVFSYAVKMEMLTDNPCKRVTVPKGEKKEKDIYTLEE 187 Query: 179 MQQFKSFWS-EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIK---------- 225 + + R+ F +YSG R + + + +N+ S++ Sbjct: 188 VAHLFQLLETAPLKYRVFFTLAIYSGFRRGEMLGLEWKDIDWEHNVISVRRTSNYTASKG 247 Query: 226 -----TQKTGTIITVELPDGFMKLLAMTPIGK--------------ETFFINNDKQKMNA 266 T+ + +++ P M LL + + F+ D + MN Sbjct: 248 IYTDTTKTKKSQRSLKFPQSVMDLLREYKAEQDEERVKLGTKWQDYDRLFVKWDGRPMNN 307 Query: 267 TQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGW-KTVDQAETYTK 324 W K + H +R F A+ + G A + G Y Sbjct: 308 NTPYFWLKEFCEENNFRFCDIHSLRHFYASALINEGVDAATVSGALGHSTITTTTSIYCH 367 Query: 325 GADRIRLGIKNSRRISSVVDSDD 347 ++ + + I+SV+D Sbjct: 368 VFNQAQ--ARAGDAIASVLDFKK 388 >gi|251779332|ref|ZP_04822252.1| site-specific recombinase, phage integrase family [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243083647|gb|EES49537.1| site-specific recombinase, phage integrase family [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 369 Score = 106 bits (265), Expect = 5e-21, Method: Composition-based stats. Identities = 55/301 (18%), Positives = 111/301 (36%), Gaps = 34/301 (11%) Query: 56 PKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKI 114 + SP K I+++ ++ +N+R+ ++S II G++ +I Sbjct: 50 QRNRGYISPSASNMLFKDFITKWYTEYKQFNIGINTRVGYQSRIKTHIIPMLGNYKLNEI 109 Query: 115 TTKHIRS----GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170 TT I+ + +K P++ + + + FK+A + + + P +E+ K + Sbjct: 110 TTPIIQDFYNIMISEKKLKPATVKKSMDILISCFKYAKKNKLIYELPTE-IEKQKIEKPK 168 Query: 171 IRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI------ 224 I+ W K+ +Q F + G+ + +GLR S+ C + + + Sbjct: 169 IKVWNKDHVQLFLNKIK-GTYLYTPIFIDVLTGLRLSELCGLRWCDVDLDNGYLTVNHQL 227 Query: 225 --------------KTQKTGTIITVE--LPDGFMKLLAMTPIGKETFFINNDKQ-KMNAT 267 KT+ + I++ L + +L K + + + K Sbjct: 228 IYDAITRTLLLGGLKTESSHRKISIPTILINYLKELKEYRKAEKNDYLVLDRNDFKYTPK 287 Query: 268 QFSIWF--KAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYT 323 S+ F K K + + + HG+R ATI G + G + TYT Sbjct: 288 SLSMNFTKKIAKYKEQLPQITFHGLRHTHATILISNGENIKVVSERLGHTDIRMTLNTYT 347 Query: 324 K 324 Sbjct: 348 H 348 >gi|269792633|ref|YP_003317537.1| integrase family protein [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100268|gb|ACZ19255.1| integrase family protein [Thermanaerovibrio acidaminovorans DSM 6589] Length = 297 Score = 106 bits (265), Expect = 5e-21, Method: Composition-based stats. Identities = 35/255 (13%), Positives = 78/255 (30%), Gaps = 16/255 (6%) Query: 85 GSLAVNSRISFESYFDQ---IIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMR 141 + + N+ ++ + + G D + + S + ++ + Sbjct: 25 RAFSPNTCQAYRRDLSKYVSFCAERG-RDPVPPEVDTVSLFLASLRSQGAAKSSVQRAAA 83 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAFE 197 + ++ V +P P + + T+ ++ + + R E Sbjct: 84 CIKSFSRFLGEVGEDPGKVPMLPDKPSPMPAILTEGEVLRLLEATAGDAPGDLRDRAMIE 143 Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-----ELPDGFMKLLAMTPIGK 252 L GLR S+ C ++ L + +++ + G + V E + L + + Sbjct: 144 LLYGCGLRASELCSLTMKDLDLSSGTVRVRGKGDKVRVLPLVGETRSALERYLKVRGTHQ 203 Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISADAGATAHELMA 309 F + + + +A + S H +R AT G L Sbjct: 204 GPIFQGDRGGPFRREMLWKMIQRRGRQACIAASRLHPHILRHSCATHLLRRGMDLRTLQC 263 Query: 310 TYGWKTVDQAETYTK 324 G +V E YT Sbjct: 264 LLGHSSVRTTEVYTH 278 >gi|323703842|ref|ZP_08115478.1| integrase family protein [Desulfotomaculum nigrificans DSM 574] gi|323531199|gb|EGB21102.1| integrase family protein [Desulfotomaculum nigrificans DSM 574] Length = 293 Score = 106 bits (265), Expect = 5e-21, Method: Composition-based stats. Identities = 43/287 (14%), Positives = 93/287 (32%), Gaps = 23/287 (8%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF--------DYRKITTKHIRSGV 123 ++ E+ K + LA+++ +++ + D D I + + + Sbjct: 6 GNVLGEFLKEIRYNGLALSTVNAYQKDIAYFAKWYMDTTDKEPHLGDVTSIDLREYQGYM 65 Query: 124 ESRKH-TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 +S + P++ + + ++ +WA + YV P + + + + + + + Sbjct: 66 QSVQDLRPATINRRMAALEKYIRWAHEKGYVDRLPTF-PKIVREQKTPPKALGRVEQNRL 124 Query: 183 KSFWSEGSQPRLA--FEFLLYSGLRCSDSCRAGVQHLQNNI---FSIKTQKTGTIITVEL 237 + R ++ GLR S+ + L K V + Sbjct: 125 LREAERRGKVRNIALIRLMMSCGLRVSEVVAIRLTDLDIGERHGMVAVRGKGNKYREVPV 184 Query: 238 PDGFMKLLAMTPIGKET-------FFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVR 290 P K + I + F N + + A K AG++ H +R Sbjct: 185 PPEARKAIREWMIERAKRYPDSDWLFPNRNGGHITARNAEQLVKNIGKFAGLDIHPHVLR 244 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 +AT GA + G ++ YTK DR + + Sbjct: 245 HTAATNMIRTGADLVTVAQILGHANLNTTAIYTKP-DRKTMMEALEK 290 >gi|313887029|ref|ZP_07820729.1| site-specific recombinase, phage integrase family [Porphyromonas asaccharolytica PR426713P-I] gi|312923555|gb|EFR34364.1| site-specific recombinase, phage integrase family [Porphyromonas asaccharolytica PR426713P-I] Length = 304 Score = 106 bits (265), Expect = 5e-21, Method: Composition-based stats. Identities = 44/256 (17%), Positives = 92/256 (35%), Gaps = 19/256 (7%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFD-YRKITTKHIRSGVESR----KHTPSSAIQFLTS 139 A N+ S++ Y ++ + +I I + + + K + S + + Sbjct: 42 QRYAGNTIRSYKDYASIFLKHVSKYPSLEEIPLSDIEAFINEKVQNGKISVSYQKGLVGA 101 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRK-TEGIRPWTKEDMQQFKSFWSEGSQPRLAFEF 198 ++ +++ + ++ L PKR ++ + ++KE+++ ++ + + Sbjct: 102 IKKMYELILDKKIQ-----LDYLYPKRSFSKLPKFFSKEEVRNILDN-TQNLKHKAILMT 155 Query: 199 LLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAM---TPIGKE 253 + GLR S+ ++ ++ + I I K V LPD + L KE Sbjct: 156 IYSCGLRLSELLNLKIKDIKSSDGIIRIHQSKGNKDRIVSLPDKLLATLRHYYQAFKPKE 215 Query: 254 TFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATY 311 F K + + K KA V S H +R AT +G + Sbjct: 216 YLFEGEKGGKYSERSVQLILKKALIKANVQSEGSVHTLRHSYATHLIQSGIDIRIVKELL 275 Query: 312 GWKTVDQAETYTKGAD 327 G + + YT D Sbjct: 276 GHENIKTTMIYTHITD 291 >gi|303255271|ref|ZP_07341342.1| phage integrase family integrase/recombinase [Streptococcus pneumoniae BS455] gi|303260417|ref|ZP_07346386.1| integrase/recombinase, phage integrase family protein [Streptococcus pneumoniae SP-BS293] gi|303265063|ref|ZP_07350977.1| integrase/recombinase, phage integrase family protein [Streptococcus pneumoniae BS397] gi|302597740|gb|EFL64815.1| phage integrase family integrase/recombinase [Streptococcus pneumoniae BS455] gi|302638452|gb|EFL68918.1| integrase/recombinase, phage integrase family protein [Streptococcus pneumoniae SP-BS293] gi|302645423|gb|EFL75656.1| integrase/recombinase, phage integrase family protein [Streptococcus pneumoniae BS397] Length = 321 Score = 106 bits (265), Expect = 5e-21, Method: Composition-based stats. Identities = 35/275 (12%), Positives = 90/275 (32%), Gaps = 14/275 (5%) Query: 61 INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120 ++ +++ + L+ + + + + ++ + + ++TT +R Sbjct: 33 VDGKKQQKYSNNNLLQLFITAKQVEGCSSKTIRYYQRTIENLFNAI-KESVTQLTTDDLR 91 Query: 121 SGVESRKH----TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176 S + + + + ++ + F W ++EY+ NP +++ K + +T Sbjct: 92 SYLANYQSEKDCSKANLDNIRRILSSFFAWLEQEEYIIKNPIRRIKKIKTEQNVKETYTD 151 Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITV 235 E ++ + E + + L +G+R + + + N + K V Sbjct: 152 EHLEIMRDNC-ENLRDLAIIDLLASTGMRVGELVQLNRSDIDFENRECVVFGKGKKERPV 210 Query: 236 ELPDG----FMKLLAMTPIGKETFFINNDKQ--KMNATQFSIWFKAKATKAGVNK-SAHG 288 L F+ + ++ I + K + K H Sbjct: 211 YFDARTKIHLRNYLNDRKDSHPALFVTLVGKVQRLGIAGVEIRLRKLGDKLSIQKVHPHK 270 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 R+ AT + D G ++ G +D Y Sbjct: 271 FRRTLATKAIDKGMPIEQVQKLLGHSKIDTTLAYA 305 >gi|194716540|gb|ACF93205.1| putative transposase [Sphingobacterium sp. PM2-P1-29] Length = 279 Score = 106 bits (265), Expect = 5e-21, Method: Composition-based stats. Identities = 44/256 (17%), Positives = 92/256 (35%), Gaps = 19/256 (7%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFD-YRKITTKHIRSGVESR----KHTPSSAIQFLTS 139 A N+ S++ Y ++ + +I I + + + K + S + + Sbjct: 17 QRYAGNTIRSYKDYASIFLKHVSKYPSLEEIPLSDIEAFINEKVQNGKISVSYQKGLVGA 76 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRK-TEGIRPWTKEDMQQFKSFWSEGSQPRLAFEF 198 ++ +++ + ++ L PKR ++ + ++KE+++ ++ + + Sbjct: 77 IKKMYELILDKKIQ-----LDYLYPKRSFSKLPKFFSKEEVRNILDN-TQNLKHKAILMT 130 Query: 199 LLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAM---TPIGKE 253 + GLR S+ ++ ++ + I I K V LPD + L KE Sbjct: 131 IYSCGLRLSELLNLKIKDIKSSDGIIRIHQSKGNKDRIVSLPDKLLATLRHYYQAFKPKE 190 Query: 254 TFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATY 311 F K + + K KA V S H +R AT +G + Sbjct: 191 YLFEGEKGGKYSERSVQLILKKALIKANVQSEGSVHTLRHSYATHLIQSGIDIRIVKELL 250 Query: 312 GWKTVDQAETYTKGAD 327 G + + YT D Sbjct: 251 GHENIKTTMIYTHITD 266 >gi|303245973|ref|ZP_07332255.1| integrase family protein [Desulfovibrio fructosovorans JJ] gi|302492756|gb|EFL52624.1| integrase family protein [Desulfovibrio fructosovorans JJ] Length = 395 Score = 106 bits (265), Expect = 5e-21, Method: Composition-based stats. Identities = 48/295 (16%), Positives = 97/295 (32%), Gaps = 20/295 (6%) Query: 49 SALTGSTPKREYINSPRKKPT--TLKWLISEYRKSAHWGSLAVNSRISF-ESYFDQIIRK 105 AL+ + E + + T L EY S A+ + S E Y + Sbjct: 70 KALSNQARREEDKAAKEAEAGRWTFTRLWEEY-SSQKTPGAALTTDRSRFEKYLKPTFGE 128 Query: 106 SGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAI-NPCLS-VER 163 + + +RS + + +P + L + L ++ V++ +P + Sbjct: 129 KDPVEVLTLDLDRLRSRLLKQGKSPQTVKHVLALFKRLVRFGVKKGLCDSPDPRKQTISM 188 Query: 164 PKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA--FEFLLYSGLRCSDSCRAGVQHLQ--N 219 P+ E +++ + + + A +++G+R + + + + Sbjct: 189 PRVDNETTEDLDADELARLVQAIEDEPNIQAANFMRLAMFTGMRRGELFKLEWRDVDFER 248 Query: 220 NIFSIKTQKTGTIITVELPDGFMKLLAMTP--IGKETFFINNDKQKM-NATQFSIWFKAK 276 I+ K G + L D +L P G F ++ S K Sbjct: 249 GFIHIRHPKGGKSQKIPLNDAARGVLEDHPHVDGTPYVFPGQGGKQRVTIQVASNRIK-- 306 Query: 277 ATKAGVNKSA---HGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGAD 327 T+AG+ HG+R A+ A +G L K+ + Y+ D Sbjct: 307 -TRAGLPADFRPLHGLRHLFASTLASSGQVDMLTLQKLLTHKSPQMTKRYSHLRD 360 >gi|305681404|ref|ZP_07404211.1| site-specific tyrosine recombinase XerC [Corynebacterium matruchotii ATCC 14266] gi|305659609|gb|EFM49109.1| site-specific tyrosine recombinase XerC [Corynebacterium matruchotii ATCC 14266] Length = 331 Score = 106 bits (265), Expect = 5e-21, Method: Composition-based stats. Identities = 44/292 (15%), Positives = 87/292 (29%), Gaps = 21/292 (7%) Query: 54 STPKREYINSPRKKPTTLKWLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDF-DY 111 + S T L+ I+++ + H + + + S R + F D+ Sbjct: 23 QSQATSAAASEPVASTQLQEAIADFAEHLHLVVGRSPATVAGYRSDLIDFCRHAHTFEDF 82 Query: 112 RKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171 + + + ++ + + R W RQ Y+ N + PK Sbjct: 83 TLVNLRAWLGAAVDAGKSRATIARRAAAARSFSSWCERQGYLDTNVAARLAVPKSGRSLP 142 Query: 172 RPWTKEDMQQF-----KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK- 225 T + + E + E L +G+R S+ C + + + ++K Sbjct: 143 TVVTPTAAETLMVSSQATTEPEYLRDTAMLELLYATGIRVSELCGIDLADVNYSRNTVKV 202 Query: 226 TQKTGTIITVELPDGFMKLLAM------------TPIGKETFFINNDKQKMNATQFSIWF 273 T K V D L F+ +++ Sbjct: 203 TGKGNKQRVVPFGDPAASALKAWRDHGRPHLLNPKKPAHNALFLGARGGRIDPRMVRTVV 262 Query: 274 KAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 + GV+ H +R +AT D GA + G ++ + YT Sbjct: 263 ARAGEQLGVDGLGPHSLRHSAATHMLDGGADLRVVQELLGHSSLQTTQIYTH 314 >gi|121594170|ref|YP_986066.1| phage integrase family protein [Acidovorax sp. JS42] gi|120606250|gb|ABM41990.1| phage integrase family protein [Acidovorax sp. JS42] Length = 538 Score = 106 bits (265), Expect = 5e-21, Method: Composition-based stats. Identities = 55/315 (17%), Positives = 103/315 (32%), Gaps = 42/315 (13%) Query: 57 KREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITT 116 + + P K + Y ++ +++ + DQ I GD + Sbjct: 198 PQPQASQQPVAPANGKKISDAYDAWVAIRQAPERTQQTYKRHADQFIALMGDPPLHTVNR 257 Query: 117 -------KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS--VERPKRK 167 +++ T ++A L S+R LF A + ++ NP VE ++ Sbjct: 258 TMGIAFRDKLQAWAIENGRTATTADNILVSLRALFNVARDRGWLTSNPLERLSVEIGGKE 317 Query: 168 TEGIRPWTKEDMQQFK-----SFWSEGSQPRLAFE-------FLLYSGLRCSDSCRAGVQ 215 +EG PWTK+++ + + + E Y+G R ++ + Sbjct: 318 SEGREPWTKDELGLIFSDPVWTQHAIPIDKKAGKEAAYWIPLIACYTGARLTEIAQLWTD 377 Query: 216 HLQN----NIFSIKT--------QKTGTIITVELPDGFMKL-----LAMTPIGKETFFIN 258 + F + + +G+ V + ++L + P G + Sbjct: 378 DVATEPGKETFEFRADAQRDQKLKNSGSWRAVPMHPELIRLGFCDYVQSLPKGSLFPHLP 437 Query: 259 NDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKT 315 + + QF WF + + G KS H R AT AGAT + A G Sbjct: 438 KEGKNGAGGQFGKWFGSFKSAKGFTSPAKSFHSFRHLVATELRLAGATDAQADAITGHAG 497 Query: 316 VDQ-AETYTKGADRI 329 + Y R Sbjct: 498 NGVGRQVYAATIRRK 512 >gi|300813238|ref|ZP_07093603.1| site-specific tyrosine recombinase XerC [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300512645|gb|EFK39780.1| site-specific tyrosine recombinase XerC [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 326 Score = 106 bits (265), Expect = 5e-21, Method: Composition-based stats. Identities = 40/246 (16%), Positives = 93/246 (37%), Gaps = 22/246 (8%) Query: 103 IRKSGDFDYRKITTKHIRSGVE----SRKHTPSSAIQFLTSMRVLFKWAV-RQEYVAINP 157 I K + + I + I + + RK + S + ++++R F + + + + INP Sbjct: 58 IDKVDEDLLKAINKQDIYAYISYLDKERKLSNKSKYRKISAVRAFFDYLTNKIDLLKINP 117 Query: 158 CLSVERPKRKTEGIRPWTKED-------MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSC 210 SV+ PK + + ++ K ++ L G+R S+ Sbjct: 118 SESVDLPKIEKSLPIYLNLDQAINLLKTIENSKENDFYRTRDYCICTLFLNCGMRLSELS 177 Query: 211 RAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK-----LLAMTPIGKETFFINNDKQKMN 265 + + +++ + + K + L + + L+ + + FI+ K++M+ Sbjct: 178 QINISSIKDEMIRV-LGKGNKERQIYLNNACIYSIKNYLMHRPKVSTDALFISMRKKRMS 236 Query: 266 ATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAET 321 + +G++ + H +R +AT+ G A L G +++ + Sbjct: 237 NRSIQHMIEKHIRNSGLDPNKYTVHKLRHTAATLMYQYGNADIKSLQEILGHESITTTQI 296 Query: 322 YTKGAD 327 YT D Sbjct: 297 YTHVND 302 >gi|283479890|emb|CAY75806.1| Tyrosine recombinase xerD [Erwinia pyrifoliae DSM 12163] Length = 351 Score = 106 bits (265), Expect = 5e-21, Method: Composition-based stats. Identities = 43/289 (14%), Positives = 102/289 (35%), Gaps = 32/289 (11%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFE---SYFDQIIRKSGDFDYRKITTKHIRSGVESR 126 TL+ L + + + + F G +++ + + Sbjct: 20 TLRQLAESWLAHLVVAGRSPRTVQGYRERVRAFLAWCEPRGITYAPQVSLAVLEAYQRWL 79 Query: 127 KHTPSSAIQ---------FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI-RPWTK 176 + + + LT++R+LF+W +++ + NP + PK + + +++ Sbjct: 80 QGYRRADGKQLVVNSQLGVLTAIRMLFRWLLQRHVILYNPAELLALPKEERRLPAQVFSE 139 Query: 177 ED----MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTG 230 + +Q + G + R E L +G+R ++ + + + +++ K G Sbjct: 140 AETRRVLQSLDAGTPPGLRNRAILELLWSTGIRRTELANLLLSDVDAVRGVVNVRRGKGG 199 Query: 231 TIITVELPDGFMKLLA----------MTPIGKETFFINNDKQKMNATQFSIWF-KAKATK 279 V + + + LA FI++ + + +A + Sbjct: 200 RDRVVPVGNAALMWLARYLKDVRPRLAQRFDSGHLFISHKGTGLAHGTLTAMAGRAIRSG 259 Query: 280 AGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 A + K+ H R AT + GA + A G + ++ + YT+ A Sbjct: 260 AHLKKAGACHIFRHXMATQMLENGADTRHIQAILGHEKLETTQIYTRVA 308 >gi|282881982|ref|ZP_06290623.1| tyrosine recombinase XerC [Peptoniphilus lacrimalis 315-B] gi|281298012|gb|EFA90467.1| tyrosine recombinase XerC [Peptoniphilus lacrimalis 315-B] Length = 326 Score = 106 bits (265), Expect = 5e-21, Method: Composition-based stats. Identities = 40/246 (16%), Positives = 93/246 (37%), Gaps = 22/246 (8%) Query: 103 IRKSGDFDYRKITTKHIRSGVE----SRKHTPSSAIQFLTSMRVLFKWAV-RQEYVAINP 157 I K + + I + I + + RK + S + ++++R F + + + + INP Sbjct: 58 IDKVDEDLLKAINKQDIYAYISYLDKERKLSNKSKYRKISAVRAFFDYLTNKIDLLKINP 117 Query: 158 CLSVERPKRKTEGIRPWTKED-------MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSC 210 SV+ PK + + ++ K ++ L G+R S+ Sbjct: 118 SESVDLPKIEKSLPIYLNLDQAINLLKTIENSKENDFYRTRDYCICTLFLNCGMRLSELS 177 Query: 211 RAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK-----LLAMTPIGKETFFINNDKQKMN 265 + + +++ + + K + L + + L+ + + FI+ K++M+ Sbjct: 178 QINISSIKDEMIRV-LGKGNKERQIYLNNACIYSIKNYLMHRPKVSTDALFISMRKKRMS 236 Query: 266 ATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAET 321 + +G++ + H +R +AT+ G A L G +++ + Sbjct: 237 NRSIQHMIEKHIRNSGLDPNKYTVHKLRHTAATLMYQYGNADIKSLQEILGHESITTTQI 296 Query: 322 YTKGAD 327 YT D Sbjct: 297 YTHVND 302 >gi|124485609|ref|YP_001030225.1| formylmethanofuran dehydrogenase subunit E-like protein [Methanocorpusculum labreanum Z] gi|124363150|gb|ABN06958.1| phage integrase family protein [Methanocorpusculum labreanum Z] Length = 320 Score = 106 bits (265), Expect = 5e-21, Method: Composition-based stats. Identities = 45/296 (15%), Positives = 90/296 (30%), Gaps = 36/296 (12%) Query: 68 PTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-------QIIRKSGDFDY--------- 111 T I Y + + A N+ ++ + G Sbjct: 21 KRTFSIWIPRYLSNLQTKNYAENTIEAYGRILKLFATYETYLKENDGSVPTSSEELNNFG 80 Query: 112 --RKITTKHIRSG------VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER 163 +I T G R+ +P+S Q+ +++ + + + Q+ NP V+R Sbjct: 81 MGAEIDTNSYEIGDFFTLLRNERQLSPASLRQYDSALSSFYGYLINQDITEANPMTKVDR 140 Query: 164 PKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS 223 PK K ++ ++ F + L +G+R S+ C +H+ + Sbjct: 141 PKIKDRELKYLKHNEVVAFINSIENPRNALLIRTI-YATGMRISEICGLLAEHIDFEEET 199 Query: 224 IKTQKTGTIITVEL-----PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKAT 278 I+ + G I + + + L G F + ++ F A Sbjct: 200 IRVRGKGGKIRIVFCDSDTLNKIREHLNGKKSG--PVFEGRNGNAISPRTVQHIFNIYAP 257 Query: 279 KAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGI 333 G+ + H +R A+ + G ++ E Y D R Sbjct: 258 P-GI--TPHKIRHSYASELYKRSHNLRVVQENLGHNSIQTTEIYIHTDIDERRKAY 310 >gi|299068373|emb|CBJ39597.1| site-specific tyrosine recombinase [Ralstonia solanacearum CMR15] Length = 329 Score = 106 bits (265), Expect = 5e-21, Method: Composition-based stats. Identities = 47/289 (16%), Positives = 90/289 (31%), Gaps = 40/289 (13%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQI----IRKSGDFDYRKITTKHIRSGVESR--- 126 I+ Y + + L+ ++ S+ + R + D ++ HIR + Sbjct: 20 IAAYLDALKFERKLSEHTLASYARELAVLQQLGARFAAGIDPMQLQPHHIRRMMAQLHGG 79 Query: 127 KHTPSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + S + L++ R +KW A+R V NP + PK + + E Sbjct: 80 GLSGRSIARALSAWRGWYKWLALRDAAVTANPVDGIHAPKSPKRLPKALSVEQAVALMEH 139 Query: 186 WS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN------IFSIKTQ------KT 229 E + R E GLR S+ ++H + ++ + K Sbjct: 140 LPGDDPEAVRDRAVNELFYSCGLRLSELVGLDLRHAKAGDYASASWLDLEAREVTVLGKG 199 Query: 230 GTIITVELPDGFMKL-------------LAMTPIGKETFFINNDKQKMNATQFSIWFKAK 276 T+ + + P F++ +++ Q K Sbjct: 200 NKRRTLPVGSKAAEALAAWLAVRAQLAPPDAAPEDAHALFLSARGKRLTQRQIQTRMKRN 259 Query: 277 ATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 A AGV H +R AT + + G ++ + YT Sbjct: 260 AIAAGVPADVHPHVLRHSFATHMLQSSGDLRAVQELLGHASIASTQVYT 308 >gi|294625249|ref|ZP_06703889.1| site-specific recombinase, phage integrase family [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292600477|gb|EFF44574.1| site-specific recombinase, phage integrase family [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 360 Score = 106 bits (265), Expect = 5e-21, Method: Composition-based stats. Identities = 57/315 (18%), Positives = 109/315 (34%), Gaps = 32/315 (10%) Query: 60 YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119 YI + TT++ + Y ++IS + +I+ G + +T + + Sbjct: 50 YIRRAGSERTTVEAAMRRYLAEVT-SGKRPVTQISEVRRAEVLIKYLGRYSLAAVTAEIV 108 Query: 120 RSGVESR---------KHTPSSAIQF---LTSMRVLFKWAVRQ---EYVAINPCLSVERP 164 + R + P S L + +F A+++ + P L + RP Sbjct: 109 ARFRDERLAGDLDAQGQRRPRSNNTVRLELALLGHMFTVALKEWGLGLIHS-PVLGIRRP 167 Query: 165 KRKTEGIRPWTKEDMQQFKSFWSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQ--NN 220 R T + Q+ S P L L +G+R S+ + Sbjct: 168 PPGPGRDRRLTPHEEQRLLRAVDGHSNPMLGWIVRLALETGMRASELVGLRRSQVDLVRR 227 Query: 221 IFSIKTQKTGTIITVELPDGFMKLLAMT------PIGKETFF---INNDKQKMNATQFSI 271 + ++ K G+ TV L +++L + PI + F D ++ + Sbjct: 228 VARLQQTKNGSSRTVPLTQEAVQVLRVALANPVRPIDTDLLFYGEPGRDGKRRSYQFNPA 287 Query: 272 WFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 W K K + H +R + + +AG + E+ A G K++ YT R Sbjct: 288 WMKLKCDAGMADLHFHDLRHEAISRLVEAGLSDQEVAAISGHKSMQMLRRYTHL--RAED 345 Query: 332 GIKNSRRISSVVDSD 346 + R+ V S+ Sbjct: 346 LVSKLDRLGRGVASN 360 >gi|9625463|ref|NP_039697.1| observed 41.8Kd protein [Mycobacterium phage L5] gi|465416|sp|P22884|VINT_BPML5 RecName: Full=Integrase gi|579129|emb|CAA79409.1| gene 33 [Mycobacterium phage L5] Length = 371 Score = 106 bits (265), Expect = 5e-21, Method: Composition-based stats. Identities = 53/319 (16%), Positives = 114/319 (35%), Gaps = 41/319 (12%) Query: 54 STPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYR 112 K+ ++ + T KWL+ LA +R + + ++ I G+ Sbjct: 63 DRAKKAAASAITLEEYTRKWLVER--------DLADGTRDLYSGHAERRIYPVLGEVAVT 114 Query: 113 KITTKHIRSGVESRKHT-PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171 ++T +R+ P++ +R + AV + +A NPC +E+ + Sbjct: 115 EMTPALVRAWWAGMGRKHPTARRHAYNVLRAVMNTAVEDKLIAENPCR-IEQKAADERDV 173 Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS--IKTQKT 229 T E++ + R+A L ++ LR + + + ++ + ++ ++ Sbjct: 174 EALTPEELDIVAA--EIFEHYRIAAYILAWTSLRFGELIELRRKDIVDDGMTMKLRVRRG 231 Query: 230 GTII----------------TVELPDGFMKLLAMTPIGK-------ETFFINN-DKQKMN 265 + + V +P +++ + E F + +++ Sbjct: 232 ASRVGNKIVVGNAKTVRSKRPVTVPPHVAEMIRAHMKDRTKMNKGPEAFLVTTTQGNRLS 291 Query: 266 ATQFSIWFKA-KATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 + F+ K A H +R AT +A AGAT ELMA G T A Y Sbjct: 292 KSAFTKSLKRGYAKIGRPELRIHDLRAVGATFAAQAGATTKELMARLGHTTPRMAMKYQM 351 Query: 325 GAD-RIRLGIKNSRRISSV 342 ++ R + +++ Sbjct: 352 ASEARDEAIAEAMSKLAKT 370 >gi|94986617|ref|YP_594550.1| prophage DLP12 integrase [Lawsonia intracellularis PHE/MN1-00] gi|94730866|emb|CAJ54229.1| prophage DLP12 integrase [Lawsonia intracellularis PHE/MN1-00] Length = 388 Score = 106 bits (265), Expect = 5e-21, Method: Composition-based stats. Identities = 63/370 (17%), Positives = 112/370 (30%), Gaps = 39/370 (10%) Query: 4 SLRLPPFVTKERTRHG-----KIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKR 58 + P +E R G K+ Y K +G+ I FI A R Sbjct: 16 KTKYPGVFFREEKRIGASGSEKVYYVVFKKNGKVI--EEKVGRQFIDDMTPAKASRI--R 71 Query: 59 EYINSPRKKPTTLK---WLISEYRK--SAHWGSLAVNSRISFESYFD------QIIRKSG 107 + ++K L L + RK W A + + D + G Sbjct: 72 SELIEGKRKTKKLAKEEALAASLRKNIHGIWEEYAKGRPKNKNTDIDLCRYELHLKNIFG 131 Query: 108 DFDYRKITTKHIRSGVESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVA-INPCLSV-E 162 +ITT +R ++ +P + + L +R + ++ + + + V E Sbjct: 132 HKFPEEITTNDVRIFKDNLIQSGKSPQTVLNTLALLRRILRFGEKNGFCTLPDRSQLVFE 191 Query: 163 RPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA--FEFLLYSGLRCSDSCRAGVQHLQNN 220 PK T+ ++ + +A L +G+R L Sbjct: 192 MPKVDNIKTENLTETQLKALMEALDAETDQVMASCLRLALVTGMRKGALLALEWTDLDFE 251 Query: 221 IFSIKTQ----KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNA-TQFSIWFKA 275 I Q K G + + + +L P F N +K + K Sbjct: 252 QGIITLQGKSAKKGKTAYIPMSEAAKIILEKLPHTSRYVFPNTKGEKRSDFRSMPNRIKQ 311 Query: 276 KATKAGVNKSAHGVRKFSATISADAGA-TAHELMATYGWKTVDQAETYTKGADRIRLGIK 334 KA + HG+R A+ A +G + L + + Y L + Sbjct: 312 KAQLPADFRPFHGLRHTYASHLASSGKVDLYTLQKLLTHSSPQMTQRYAH------LADE 365 Query: 335 NSRRISSVVD 344 +R + V D Sbjct: 366 AMKRAARVAD 375 >gi|303246068|ref|ZP_07332349.1| integrase family protein [Desulfovibrio fructosovorans JJ] gi|302492464|gb|EFL52335.1| integrase family protein [Desulfovibrio fructosovorans JJ] Length = 373 Score = 106 bits (265), Expect = 5e-21, Method: Composition-based stats. Identities = 55/311 (17%), Positives = 102/311 (32%), Gaps = 32/311 (10%) Query: 35 LPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRIS 94 +P P +T + ++ + + + TL L Y + Sbjct: 52 IPDPETATASVQVVKTVSTTDAPTGEVLGQKPVGITLLELGHRYLDHMRASGRTDKHIRN 111 Query: 95 FESYFD-QIIRKSGDFDYRKITTK--------HIRSGVESRKHTPS--SAIQFLTSMRVL 143 E + Q + GD +T + H + + K T S + ++ + + Sbjct: 112 IERLLENQFVPVIGDKPVDSLTYQGDMVQFILHFKGVSGTTKKTRSQYTVNKYCDYLSFI 171 Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPW----TKEDMQQFKSFWSEGSQPRLAFEFL 199 F + + +NP + ++PK + PW T +D ++ + R A E Sbjct: 172 FNFGIDNGLTKVNPLKNWKKPKVQ-----PWDLKLTLDDAKKIMACAEP--HLRWAMEVC 224 Query: 200 LYSGLRCSD--SCRAGVQHLQ--NNIFSIKTQKTGTIITVEL-PDGFMKLLAMTPIGKET 254 G R + +++ I KT T TV + P +L + Sbjct: 225 FNLGTRPGESELLSLRWENIDFTAGTVRIYATKTKTYRTVPINPSFLKRLEEEKASSQSE 284 Query: 255 FFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYG 312 + I +K+ FK +AG+ + +R AT GA + G Sbjct: 285 YVIEYMGRKLT--TIRKAFKHACQRAGITYPTRMYDLRHLFATTLLSRGADLAAVSKMMG 342 Query: 313 WKTVD-QAETY 322 TV A+TY Sbjct: 343 HSTVKLTADTY 353 >gi|110802806|ref|YP_698501.1| site-specific tyrosine recombinase XerC [Clostridium perfringens SM101] gi|110683307|gb|ABG86677.1| site-specific recombinase, phage integrase family [Clostridium perfringens SM101] Length = 450 Score = 106 bits (265), Expect = 5e-21, Method: Composition-based stats. Identities = 45/257 (17%), Positives = 91/257 (35%), Gaps = 25/257 (9%) Query: 103 IRKSGDFDYRKITTKHIRSGVE----SRKHTPSSAIQFLTSMRVLFKWA-VRQEYVAINP 157 I GD + IT I + + R ++ + + + +++ FK+ + + + NP Sbjct: 188 ISDLGDNFIKDITLSDIYAFLAFLEKVRNNSAYARARKVATLKSFFKFLNSKIKLIDENP 247 Query: 158 CLSVERPKRKTEGIRPWTKED----MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAG 213 + +E PK T + + + L G+R S+ C Sbjct: 248 TVELESPKINKRHPVYLTLDQSITVLNSMNKSNKNYYRDYCILTLFLNCGMRLSELCNIE 307 Query: 214 VQHLQNNIFSIKTQKTGTIITVELPDGFMKLL----------AMTPIGKETFFINNDKQK 263 ++ ++ + +I K TV L + + + T K+ F+++ + Sbjct: 308 IEKIKGDTLTII-GKGNKERTVYLNEASIAAIENYLKNRNDSKATEEAKKYLFLSSKYRP 366 Query: 264 MNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQA 319 +N I K AG + H +R +AT+ G L G + + Sbjct: 367 INKRSVEILVKKHIENAGFKDQKYTPHKLRHTAATLMYKYGNVDIRSLQNILGHENISTT 426 Query: 320 ETYTKGADR-IRLGIKN 335 + YT D +R +K Sbjct: 427 QIYTHVDDETLRKAVKT 443 >gi|325297661|ref|YP_004257578.1| integrase family protein [Bacteroides salanitronis DSM 18170] gi|324317214|gb|ADY35105.1| integrase family protein [Bacteroides salanitronis DSM 18170] Length = 432 Score = 106 bits (265), Expect = 5e-21, Method: Composition-based stats. Identities = 45/267 (16%), Positives = 91/267 (34%), Gaps = 28/267 (10%) Query: 99 FDQIIRKSGDF-DYRKITTKHIRSGVE--SRKHTPS-------SAIQFLTSMRVLFKWAV 148 I +G +I + ++ ++ P + + + AV Sbjct: 173 IRIIEDYAGKKVTLDQIDKAFCQGYIDYLMMEYRPRGKRVSNFTLKNYYRVLNSALNAAV 232 Query: 149 RQEYVAINPCLSVER---PKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLR 205 R E + NP +++ + T E+++ + + + + A+ F + GLR Sbjct: 233 RAELMRSNPFDKIDKSDKIRLPESKRSYMTIEEVKALIATPMKYEEIKCAYLFSCFCGLR 292 Query: 206 CSDSCRAGVQHLQNNIFSIKT----QKTGTIITVELPDGFMKLL--AMTPIGKETFFINN 259 SD R + + + + +KT I + L +K + + F Sbjct: 293 ISDVKRLQWKDVFIDKGQYRLAVSMKKTKEPIYLPLSSEALKWMPERGDKTPDDLVFDLP 352 Query: 260 DKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVD 317 ++N K A AG+NK S H R AT+ GA + G V Sbjct: 353 SGNEINR-----LLKPWAKAAGINKRFSFHTSRHTFATMMLTLGADLYTTSKLLGHADVK 407 Query: 318 QAETYTKGADRIRLGIKNSRRISSVVD 344 + Y K ++ + + ++ + D Sbjct: 408 MTQVYAKIINKKK--DEAVNLVNGLFD 432 >gi|310764975|gb|ADP09925.1| site-specific tyrosine recombinase XerC [Erwinia sp. Ejp617] Length = 359 Score = 106 bits (265), Expect = 5e-21, Method: Composition-based stats. Identities = 44/289 (15%), Positives = 98/289 (33%), Gaps = 32/289 (11%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFE---SYFDQIIRKSGDFDYRKITTKHIRSGVESR 126 TL+ L + + + + F G +++ + S Sbjct: 20 TLRQLAESWLSHLAAAGRSPRTVQGYGERVRAFLAWCEPRGIRYAPQVSLVVLESYQRWL 79 Query: 127 KHTPSSA---------IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI-RPWTK 176 + + L+++R L +W +++ ++ NP +E PK + + +++ Sbjct: 80 QSYRRADGRHLVVNGQRHLLSALRGLLRWLLKRHHILYNPADLLELPKEERRLPAQVFSE 139 Query: 177 ED----MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTG 230 + +Q + G + R E L SG+R S+ + + + +++ K G Sbjct: 140 SETRRVLQSLDAGTPPGLRNRAILELLWSSGIRRSELAGLLLSDVDFTRGVVNVRRGKGG 199 Query: 231 TIITVEL----PDGFMKLLA------MTPIGKETFFINNDKQKMNATQFSIWF-KAKATK 279 V + + L FI++ + + +A Sbjct: 200 KDRVVPVGYAALMWLGRYLQDVRPRLAQRFDSGHLFISHKGTGLAHGTLTAMAGRAIRDG 259 Query: 280 AGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 A + K+ H R AT + GA + A G + ++ + YT+ A Sbjct: 260 AHLKKAGACHIFRHSMATQMLENGADTRHIQAILGHEKLETTQIYTRVA 308 >gi|325980818|ref|YP_004293221.1| integrase family protein [Nitrosomonas sp. AL212] gi|325533323|gb|ADZ28042.1| integrase family protein [Nitrosomonas sp. AL212] Length = 316 Score = 106 bits (265), Expect = 5e-21, Method: Composition-based stats. Identities = 50/268 (18%), Positives = 92/268 (34%), Gaps = 30/268 (11%) Query: 91 SRISFESYFDQIIRKSG---DFDYRKITTKHIRSGVES---RKHTPSSAIQFLTSMRVLF 144 +R ++E+ + +G ++R +T HI + + R + S L ++ LF Sbjct: 38 TRRAYENALKDFMNFTGIQNPEEFRVVTRAHIIAWRDDLMNRSLSSMSIRHRLAALSSLF 97 Query: 145 KWAVRQEYVAINPCLSVERPKRKT-EGIRPWTKEDMQQFKSFWSEGS-----QPRLAFEF 198 ++ + V NP V+RP ++ EG P + + +GS + R Sbjct: 98 EYLCEKNTVTHNPVKGVKRPAVESYEGKTPAIGDHQARKLLDAPDGSSLKGKRDRAILAT 157 Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSIK----TQKTGTIITVELPDGFMKLLAMTPIGKET 254 LLY LR + CR V+ + + + K G V L L+ E Sbjct: 158 LLYHALRRDELCRLKVKDFKQERRGVPHMKISGKGGKTRYVPLHPAASGLIHDYLDAAEH 217 Query: 255 FFINND--------------KQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADA 300 + ++ + + + K G AH +R +AT + D Sbjct: 218 GLEDTGALFRSTSNNRDKESQKPITPDGVYKLVQKYSEKLGFKIGAHSLRATAATNALDH 277 Query: 301 GATAHELMATYGWKTVDQAETYTKGADR 328 A ++ G + Y R Sbjct: 278 QADIAKVQEWLGHANIATTRIYDHRRTR 305 >gi|118592686|ref|ZP_01550076.1| Integrase [Stappia aggregata IAM 12614] gi|118593369|ref|ZP_01550753.1| Integrase [Stappia aggregata IAM 12614] gi|118593930|ref|ZP_01551286.1| Integrase [Stappia aggregata IAM 12614] gi|118433470|gb|EAV40141.1| Integrase [Stappia aggregata IAM 12614] gi|118434047|gb|EAV40704.1| Integrase [Stappia aggregata IAM 12614] gi|118434737|gb|EAV41388.1| Integrase [Stappia aggregata IAM 12614] Length = 287 Score = 106 bits (265), Expect = 5e-21, Method: Composition-based stats. Identities = 40/267 (14%), Positives = 90/267 (33%), Gaps = 16/267 (5%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRK--ITTKHIRSGVESRKHTPSSAIQFLTSMRV 142 +L+ ++ S+ + R G R + + + + + + Q + ++R Sbjct: 19 RNLSPATQRSYLHAVSKFSRYFGRSPDRLGLEDVRAFQVHLVATGISWPALNQTVCALRF 78 Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS 202 + + Q + + + + + +++ +F + R A + Sbjct: 79 FYGVTLGQAEIP----ERIAYARAPRKLPEVLSADEVVRFLEAVPS-LKTRTALTAAYAA 133 Query: 203 GLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLA---MTPIGKETFFI 257 GLR S+ V + + I+ K G V L + +L + F Sbjct: 134 GLRVSEVVGLKVADIDSQRGVIRIRHGKGGKDRYVMLSAQLLHILRTYWRLARPPDWLFP 193 Query: 258 NNDK-QKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWK 314 + ++ T ++ AG++K + H +R AT + G + G Sbjct: 194 RRNGSGPISITVLHAACRSARAAAGIDKRVTVHTLRHSFATHLLENGTDIRIIQVLLGHN 253 Query: 315 TVDQAETYTKGADR-IRLGIKNSRRIS 340 + YTK + R IR R++ Sbjct: 254 NLSSTARYTKVSSRLIRRTQSPLDRLN 280 >gi|24375788|ref|NP_719831.1| integrase/recombinase XerC [Shewanella oneidensis MR-1] gi|34222793|sp|Q7ZAJ5|XERC_SHEON RecName: Full=Tyrosine recombinase xerC gi|24350736|gb|AAN57275.1|AE015863_4 integrase/recombinase XerC [Shewanella oneidensis MR-1] Length = 299 Score = 106 bits (265), Expect = 5e-21, Method: Composition-based stats. Identities = 31/265 (11%), Positives = 88/265 (33%), Gaps = 19/265 (7%) Query: 76 SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD-FDYRKITTKHIR---SGVESRKHTPS 131 Y +S L+ ++ ++ + + D + +H + + + + +P Sbjct: 13 EAYMQSER--QLSAHTVRNYLYELQRGRELLPEGIDLLNVGREHWQQVLAKLHRKGLSPR 70 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR---PWTKEDMQQFKSFWSE 188 S +L++++ ++ +R + +NP + PK+ + + + + Sbjct: 71 SLSLWLSAVKQWGEFLLRAGAIELNPAKGLSAPKQAKPLPKNIDVDSLTHLLEIDGNDPL 130 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAM 247 + + E SGLR ++ + +Q + ++ K V + + ++ Sbjct: 131 TLRDKAIMELFYSSGLRLAELAALDLSSVQYDQREVRVLGKGNKERIVPVGRYAIDAISA 190 Query: 248 T-------PIGKETFFINNDKQKMNATQFSIWFKAK--ATKAGVNKSAHGVRKFSATISA 298 P F+ ++++ + H +R AT Sbjct: 191 WLECRRQIPCEDNALFVTEKGKRLSHRSIQARMSKWGQEQALSMRVHPHKLRHSFATHML 250 Query: 299 DAGATAHELMATYGWKTVDQAETYT 323 ++ A + G + + + YT Sbjct: 251 ESSADLRAVQELLGHENLSTTQIYT 275 >gi|291527468|emb|CBK93054.1| Site-specific recombinase XerD [Eubacterium rectale M104/1] Length = 308 Score = 106 bits (265), Expect = 5e-21, Method: Composition-based stats. Identities = 43/284 (15%), Positives = 100/284 (35%), Gaps = 30/284 (10%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV--ESRKHTPSSAIQFLTSMRV 142 L + +++ Q + + ITT + S + ++++P S + + S++ Sbjct: 19 KRLDTKTLKAYKIDLRQFSEQISITEIEYITTSVLESYITNLHQQYSPKSVKRKIASIKA 78 Query: 143 LFKWAVRQEYVAINPCLSVE-RPKRKTEGIRPWTKEDMQ-----QFKSFWSEGS------ 190 F + ++ + +NP ++ + + + + ++ + + S Sbjct: 79 FFHYLEYKDIIILNPFNKLQIKFREPVILPKTIPLKTLEVLFNAAYAKYHKTTSPCQKRK 138 Query: 191 --QPRLAFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQKTGTII-------TVELPD 239 + E L +G+R S+ C +Q LQNNI I + + + + + + Sbjct: 139 TLRDIAVLELLFATGIRISELCSILLQNMDLQNNIILIHGKGSKERLIHICDPNVLNILN 198 Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS 297 + FF+NN +++ A ++ + H R AT Sbjct: 199 QYYTEYYSQISACGYFFVNNTGNRLSDQSVRDMINKYCRIADIDYHITPHMFRHTFATQL 258 Query: 298 ADAGATAHELMATYGWKTVDQAETYTK---GADRIRLGIKNSRR 338 + + G +++ E YT + L K+ RR Sbjct: 259 LEENVDIRYIQTMLGHSSINVTEIYTHVTISKQKDILASKHPRR 302 >gi|213972099|ref|ZP_03400191.1| site-specific recombinase, phage integrase family [Pseudomonas syringae pv. tomato T1] gi|302061577|ref|ZP_07253118.1| phage integrase family site specific recombinase [Pseudomonas syringae pv. tomato K40] gi|302131091|ref|ZP_07257081.1| phage integrase family site specific recombinase [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213923137|gb|EEB56740.1| site-specific recombinase, phage integrase family [Pseudomonas syringae pv. tomato T1] Length = 318 Score = 106 bits (265), Expect = 5e-21, Method: Composition-based stats. Identities = 42/270 (15%), Positives = 90/270 (33%), Gaps = 30/270 (11%) Query: 89 VNSRISFESYFDQIIR---KSGDFDYRKITTKHI---RSGVESRKHTPSSAIQFLTSMRV 142 +R ++++ +G ++R + H+ R+ +E R + ++ + L ++ Sbjct: 38 PRTRRAYQADLRDFCSFVGLAGAEEFRVVNRAHVLAWRAQLERRALSGATIRRKLAALAS 97 Query: 143 LFKWAVRQE-YVAINPCLSVERPKRKTEGIRP--WTKEDMQQFKSFWSE----GSQPRLA 195 LF + + NP V RP +T + + ++ + G + R Sbjct: 98 LFDYLLDNNALAGGNPVHGVARPPVETNEGKTPALGDDQAKRLLDAPDDESLQGLRDRAI 157 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ---KTGTIITVELPDGFMKLLAMTPIGK 252 LLY GLR + LQ + K G I + L + + + + Sbjct: 158 LAVLLYQGLRREELSLLQTGDLQERRGVKHLRIHGKGGKIRYLPLHPVAAERIYVCLVRD 217 Query: 253 E-------TFFINNDKQ----KMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISA 298 F + + + A+ A ++ HG+R +AT + Sbjct: 218 GDRAQTPGALFCSLRGKTSGTGITGKGVYGVVSKWASAALIHVDGLGVHGLRATAATNAL 277 Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADR 328 + A ++ G + Y + R Sbjct: 278 EHDADIAKVQMWLGHANISTTRLYDRRGQR 307 >gi|227112895|ref|ZP_03826551.1| integrase protein [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 301 Score = 106 bits (265), Expect = 5e-21, Method: Composition-based stats. Identities = 53/275 (19%), Positives = 96/275 (34%), Gaps = 19/275 (6%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESRKHT 129 +K L ++ + +++ ++S D+ II G + + + S ++ H Sbjct: 1 VKELCIKFMEDYSSQRNKPSTQEGYQSVIDRNIIPMLGRMKVQDLKRPDVASMMKKMAHK 60 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVA--INPCLSVERPKRKTEGIRPWTKEDM-------Q 180 P+ A + + MR +F A Y NPC V + + E+M Sbjct: 61 PADANRTFSVMRKMFNLAEVWGYRPDGTNPCRHVPM-YPNGKATHLISDEEMGKLFRYLD 119 Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELP 238 Q ++ E + LA R S+ + N KTG + + Sbjct: 120 QLEAEGLEHAVIPLAIRLQFEFAARRSEIIELQWDWIDLENRRVVWPDSKTGGMSK-PMS 178 Query: 239 DGFMKLLAMTPIG--KETFFINNDK--QKMNATQFSIWFKAKATKAGVNK-SAHGVRKFS 293 + +LL+ K + + ++ ++ + AGV HG+R S Sbjct: 179 EEAYRLLSTAARNAMKPHVLPSPRHPDRHLSDGEYYSGWTRTLKAAGVTHVGTHGIRHRS 238 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 AT A++G MA KTV Y D+ Sbjct: 239 ATDIANSGIPVKVGMALTAHKTVAMFMRYVHTEDK 273 >gi|225874532|ref|YP_002755991.1| putative tyrosine recombinase XerD [Acidobacterium capsulatum ATCC 51196] gi|225794156|gb|ACO34246.1| putative tyrosine recombinase XerD [Acidobacterium capsulatum ATCC 51196] Length = 302 Score = 106 bits (264), Expect = 5e-21, Method: Composition-based stats. Identities = 42/283 (14%), Positives = 88/283 (31%), Gaps = 35/283 (12%) Query: 73 WLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK--HIRSGVESRKHT 129 L+ +Y+ L S +++S + + + H+ +E Sbjct: 8 DLLRDYQSYLRVEKGLRPLSCQAYQSDLLLFAEYLESMNTALLDARSEHVAGFLEHLNTH 67 Query: 130 P---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM------Q 180 S + L+ +R +KW + + + +P ++++ P + +EDM Sbjct: 68 GVVSRSVARKLSCLRGFYKWLILDKRIHRDPTINMDSPSAWKILPKSLAQEDMTAMLDRA 127 Query: 181 QFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV- 235 + + E + E L GLR S+ V L + + + G + Sbjct: 128 RLLAEHPEADGIALRNYAILELLYAGGLRVSELTGLRVADLSLDAGRVLVRGKGDKERLV 187 Query: 236 ------------ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283 L G +L + F++ + + + Sbjct: 188 PLGQPAVAALRQYLDRGRAELARKARGAQGALFLSARGKPLTREYVWKLVRQY------G 241 Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 S H +R +AT + GA + G + + YT A Sbjct: 242 ASPHMLRHSAATHMVEHGADLRTVQTFLGHADIATTQVYTHVA 284 >gi|310827797|ref|YP_003960154.1| phage integrase [Eubacterium limosum KIST612] gi|308739531|gb|ADO37191.1| phage integrase [Eubacterium limosum KIST612] Length = 320 Score = 106 bits (264), Expect = 5e-21, Method: Composition-based stats. Identities = 50/288 (17%), Positives = 91/288 (31%), Gaps = 40/288 (13%) Query: 85 GSLAVNSRISFESYFDQIIR------------------KSGDFDYRKITT---KHIRSGV 123 + N+ IS+ + Q R D D + I I + + Sbjct: 20 RGFSPNTLISYRNDLMQFFRFLKVRFQLADPDAEFDTISIDDVDLKVIKQVTLPDIYAFL 79 Query: 124 ESRKHTPSSAIQFLT----SMRVLFKWAVR-QEYVAINPCLSVERPKRKTEGIRPWTKED 178 S+ +++ L+ + + +P +E PK K+ T ++ Sbjct: 80 SYATSKRSNIDSTRKRKTAAIKNLYHYLTTVIDTKMDDPTQRLEIPKVKSRDPVYLTLDE 139 Query: 179 MQQFKSFWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236 + R L G+R S+ ++ +Q I K + Sbjct: 140 ALSLLNAVDGEFYERDLAIITLFLNCGIRLSELTNLKIEDIQEETIHI-VGKGNKERNIR 198 Query: 237 LPDG----FMKLLAMTPIGKE--TFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAH 287 L D +A+ P + F++ K ++ K KAG+N S H Sbjct: 199 LNDACVETLEAYMAVRPEDTDVPYVFLSKRKTPLSNRTVQSMVKKYVLKAGLNADKISVH 258 Query: 288 GVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTK-GADRIRLGI 333 +R +AT+ G L G +++ E YT D +R I Sbjct: 259 KLRHTAATLMHKYGQVDIRTLQKVLGHESISTTEIYTHIEVDDVREAI 306 >gi|325678329|ref|ZP_08157952.1| site-specific recombinase, phage integrase family [Ruminococcus albus 8] gi|324109971|gb|EGC04164.1| site-specific recombinase, phage integrase family [Ruminococcus albus 8] Length = 398 Score = 106 bits (264), Expect = 5e-21, Method: Composition-based stats. Identities = 56/358 (15%), Positives = 112/358 (31%), Gaps = 55/358 (15%) Query: 16 TRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK--W 73 GK I +R P + A A + E + ++K Sbjct: 20 DIRGKQIVKYRT-------FRPPEGMSEKQAQKEANRQAVLFEEECKIGHCQTGSIKFEA 72 Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH----- 128 ++ K L + ++ G KI+ + I+ + Sbjct: 73 FAEQWFKEYAKLELRPTTYERMRKLTARVYPAIGHLKLDKISRRDIKLFINDLALNGRNF 132 Query: 129 ------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR-KTEGIRPWTKEDMQQ 181 + + I ++ + +F +A+ + + NPC ++ P + + ++ E+ Q Sbjct: 133 KTGEPLSRKTIIHHVSFISDVFSYAIDMDMLTYNPCEKMKIPHIGEEKEREIYSPEEFDQ 192 Query: 182 -FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIK------------T 226 F+ + R+ F +++G R + + + + N+ S++ T Sbjct: 193 LFELLQQAPLKYRVFFTLAVFTGFRRGELLGLEWKDILWEENVISVRRTSAYTGAEGQYT 252 Query: 227 QKTGTIITVEL---PDGFMKLLAMTP--------------IGKETFFINNDKQKMNATQF 269 KT T + PD +LL + + F D + MN Sbjct: 253 GKTKTKRSQRCNRYPDELFELLKEYKVWQDEERERQGEKWVDTDRLFTKWDGRPMNPQTP 312 Query: 270 SIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKG 325 W+K K + H +R A+I AG + A G + YT Sbjct: 313 YGWYKEFCQKHDFRFCNIHSMRHSHASILIAAGVDVATVSADLGHSNCNTTLGIYTHE 370 >gi|168208118|ref|ZP_02634123.1| site-specific recombinase, phage integrase family protein [Clostridium perfringens E str. JGS1987] gi|170660597|gb|EDT13280.1| site-specific recombinase, phage integrase family protein [Clostridium perfringens E str. JGS1987] Length = 312 Score = 106 bits (264), Expect = 5e-21, Method: Composition-based stats. Identities = 50/268 (18%), Positives = 102/268 (38%), Gaps = 17/268 (6%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT- 129 + L+ EY ++++ ++E+ F + I GD +I TK I + K Sbjct: 18 ISELLEEYITELQVNQCSIHTIKTYETAFKRFICDEGDLRLSEINTKVINHFKNNLKDKV 77 Query: 130 -PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 P + +++ +R +F +A +QEY+ L ++ K + + T E+++ S + Sbjct: 78 SPRTINTYISHLRAVFNYAYKQEYMDK---LEIKLIKVQQKVKYVPTDEEIEILLSEGRK 134 Query: 189 GSQP----RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD----- 239 + RLA + +G+RC + + + S K + + +P+ Sbjct: 135 ETYSNYVCRLACMVMCTTGIRCLEFLSLNIGNFTKEYISTNHTKNRMLRYLPIPNLVSKE 194 Query: 240 --GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA-GVNKSAHGVRKFSATI 296 ++K + F++ ++ F F+ A K G H +R++ T Sbjct: 195 IRSYIKNYRKDAKQDDPLFVSVYLRRYTDKGFRKSFRDFAKKKIGHEIGTHCLRRYFITK 254 Query: 297 SADAGATAHELMATYGWKTVDQAETYTK 324 S + A L G Y K Sbjct: 255 SLNNNANPILLAKITGHHDTRMFNYYYK 282 >gi|107024205|ref|YP_622532.1| phage integrase [Burkholderia cenocepacia AU 1054] gi|116688470|ref|YP_834093.1| phage integrase family protein [Burkholderia cenocepacia HI2424] gi|105894394|gb|ABF77559.1| phage integrase [Burkholderia cenocepacia AU 1054] gi|116646559|gb|ABK07200.1| phage integrase family protein [Burkholderia cenocepacia HI2424] Length = 347 Score = 106 bits (264), Expect = 5e-21, Method: Composition-based stats. Identities = 46/284 (16%), Positives = 100/284 (35%), Gaps = 21/284 (7%) Query: 60 YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119 Y++ + T+ + Y + ++ S + G + ++ + + Sbjct: 50 YLSRAPSEKLTVSAALKRYMEEVSVTK-KATTQRSESFSAKHLEAFFGKYSMAAVSAELV 108 Query: 120 RSGVESRKHTPSSAIQF---LTSMRVLFKWAVRQEY---VAINPCLSVERPKRKTEGIRP 173 + R S L + LF+ A+ QE+ + NP +V +P R Sbjct: 109 AKYRDERLAAGKSNNTVRLELAMLGHLFRMAI-QEWGIGLTFNPVANVRKPSPGAGRDRR 167 Query: 174 WTKEDMQQFKSFWSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKT 229 ++++ Q+ + S P L + +G+R S+ + + +++ K Sbjct: 168 LSRDEHQRLFAAADAHSNPMLGWIVRLAVETGMRSSEITGLCRSQVDLDRRVVTLRDTKN 227 Query: 230 GTIITVELPDGFMKLLAMT------PIGKETFFINNDKQ--KMNATQFSIWFKAKATKAG 281 G+ V L ++L PI + F + K F + G Sbjct: 228 GSSRVVPLTREAAEVLRAALDNPIRPIDTDLVFFGEPGRDGKRKPYVFQKLWTGIVRDLG 287 Query: 282 -VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 V+ H +R + + +AG + E+ + G K++ + YT Sbjct: 288 MVDLHFHDLRHEAVSRLVEAGLSDQEVASISGHKSMQMLKRYTH 331 >gi|291536947|emb|CBL10059.1| Site-specific recombinase XerD [Roseburia intestinalis M50/1] Length = 416 Score = 106 bits (264), Expect = 5e-21, Method: Composition-based stats. Identities = 49/304 (16%), Positives = 100/304 (32%), Gaps = 28/304 (9%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH 128 T + L Y + L ++ ++ ++ I+ G +I +R Sbjct: 57 TFQNLYEIYMEDMA-ARLKQSTLLTKKAVLQTHILPFFGSKPINEIKASDVRRWQAKLMS 115 Query: 129 TPSSA-----IQFLTSMRVLFKWAVRQEYVAINPCLSVERP-KRKTEGIRPWTKEDMQQF 182 +P++ + T + + +A R + NPC K K E + WT + F Sbjct: 116 SPNNYSQTYLKKINTELNSIINYAKRFYDLNTNPCGKAGTIGKAKAEEMDYWTYNEYIVF 175 Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ---------------NNIFSIKTQ 227 + + + FE L ++G+R + + + Sbjct: 176 REGVKDKPLSYICFEVLYWTGMREGELLALSPADIDIDNKLISINRTYQRIGGKDVFTSP 235 Query: 228 KT-GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-S 285 KT + T+ +PD + L+ + + + + S G K Sbjct: 236 KTRKSKRTIPIPDFLCQELSDYIQSRYMLDADERLFPVTKSYLSHEMIRGCKITGAKKIR 295 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSVVD 344 H +R A++ + G A L G + V TY+ + + +S + S+ Sbjct: 296 IHDIRHSHASLLINQGCDALMLADKLGHEKVSTTLNTYSHLFPHKQQELVHS--LESLQA 353 Query: 345 SDDP 348 +D P Sbjct: 354 TDSP 357 >gi|251773381|gb|EES53930.1| phage integrase family protein [Leptospirillum ferrodiazotrophum] Length = 344 Score = 106 bits (264), Expect = 6e-21, Method: Composition-based stats. Identities = 49/333 (14%), Positives = 109/333 (32%), Gaps = 26/333 (7%) Query: 15 RTRHGKIIYYFR-KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73 T+ G + + + + G ++ + + + G + +++ + TT+ Sbjct: 4 ITKRGDLQWQVKIRRKGFTLQSRTFNSKAESETWARLVEGEMDRGVFVDRSESEKTTVAE 63 Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKHTPS 131 Y + L G I + + + + H+PS Sbjct: 64 AFDRYEREVAV--LKKGYAQEKYKISYWRKSSFGQRYIANIRPTDLAAWRDEYLKTHSPS 121 Query: 132 SAIQFLTSMRVLFKWAVRQEYVA---INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 + + L + LF A++ E+ +NP + +P+ R + S Sbjct: 122 TVNRLLIVLSHLFTIAIK-EWGMGNLVNPVQQIRKPRFPRGRDRRLLPGEENVLLSACKA 180 Query: 189 -GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLL 245 G L F L +G+R S+ Q + ++ K G V L +++L Sbjct: 181 YGGDLSLLVRFALETGMRRSEIAGMTWQMVDLKKRTVTLLVTKNGDKRIVPLSPEAVRIL 240 Query: 246 AMTPIG-KETFFINNDKQ-----KMNATQFSIWFKAKATKAG--------VNKSAHGVRK 291 + P + + T+ ++ + K G ++ + H +R Sbjct: 241 STLPRRLDDQVWEGKPGSITQAFMRVVTRARGAYEKECEKKGAKPDPTFLLDLTFHDLRH 300 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTK 324 + + + G ++ A G KT+ + YT Sbjct: 301 EATSRFFEKGLNPMQVAAITGHKTLQMLKRYTH 333 >gi|84517249|ref|ZP_01004604.1| Site-specific recombinase XerD-like [Loktanella vestfoldensis SKA53] gi|84508924|gb|EAQ05386.1| Site-specific recombinase XerD-like [Loktanella vestfoldensis SKA53] Length = 401 Score = 106 bits (264), Expect = 6e-21, Method: Composition-based stats. Identities = 52/337 (15%), Positives = 105/337 (31%), Gaps = 19/337 (5%) Query: 13 KERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72 + R GK Y + + + L A+ + + I Sbjct: 48 RYRDTRGKTR-YAKLADAQHVTLHQARTLCGRMRNKIAMGINPSAEKSIKRQVPTFGDFA 106 Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE---SRKHT 129 Y + + + + +I G +I+T+ + + + Sbjct: 107 Q--DRYMPFSQANKRSWKTDETLIRT--HLIPTFGKMHLDEISTEDVLNMQQAGLKAGAA 162 Query: 130 PSSAIQFLTSMRVLFKWAVRQEY----VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 P S + L +R +F A +++ V NP V K + R E+M + Sbjct: 163 PGSVNRRLILLRYMFNLAW-RDWKIAGVTENPTHGVRLLKENNKKERYVRAEEMARLYDE 221 Query: 186 WSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGF 241 L FL+ +G R ++ A + + K+G V L DG Sbjct: 222 VCGSQNIMLKHIVAFLVLTGARRNEVLHATWHDINMTTGKWRIPETKSGYARHVPLNDGA 281 Query: 242 MKLLA-MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISAD 299 M +L M + + + N + +AG+ + H +R A++ + Sbjct: 282 MAVLQQMQDVSRSQYIFGNPNTGKPYVHIYYAWDIARRRAGLPDVRMHDLRHTFASLLVN 341 Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336 G++ + + G + + Y L + N Sbjct: 342 NGSSLYAVQMLLGHTQIKTTQRYAHLTQETLLDVSNI 378 >gi|146296400|ref|YP_001180171.1| phage integrase family protein [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145409976|gb|ABP66980.1| phage integrase family protein [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 326 Score = 106 bits (264), Expect = 6e-21, Method: Composition-based stats. Identities = 43/284 (15%), Positives = 92/284 (32%), Gaps = 25/284 (8%) Query: 65 RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124 + T + ++ + ++ ++ +++ + I+ G I I+ Sbjct: 26 KSSSITFQEFVNYWFEAYAKIAVKQSTQKRYRELLIPAIKAIGTKPLSDIKPLDIQKIYM 85 Query: 125 SR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 + K + S+ ++ + +FK AV EY++ NP V P + + W E ++F Sbjct: 86 NLTGKLSDSTILKLHRLLHEIFKHAVMWEYISDNPVKKVLPPSPEKKVFDVWDVETAKRF 145 Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSI-------KTQKTG--- 230 L++G+R + + + I S+ + KT Sbjct: 146 LEVI-RNETIYYPVLIALHTGMRAGEIVSLKWYDVNFEARIISVVKSVRNNRGLKTSDVK 204 Query: 231 ---TIITVELPDGFMKLLA-----MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282 + +V + D L + P + + S FK + Sbjct: 205 TKTSKRSVYINDVLFSELKNLYETIKPKPDDFVCPRLPTGNLTVGYLSKRFKLLVKRYNF 264 Query: 283 NK-SAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTK 324 H +R AT+ G + G + A+TY+ Sbjct: 265 PVIRFHDLRHTFATLMLSLGVNTKIVAEILGHSDIKLTADTYSH 308 >gi|157804202|ref|YP_001492751.1| site-specific tyrosine recombinase XerC [Rickettsia canadensis str. McKiel] gi|166918899|sp|A8F033|XERC_RICCK RecName: Full=Tyrosine recombinase xerC gi|157785465|gb|ABV73966.1| tyrosine recombinase [Rickettsia canadensis str. McKiel] Length = 305 Score = 106 bits (264), Expect = 6e-21, Method: Composition-based stats. Identities = 43/284 (15%), Positives = 110/284 (38%), Gaps = 28/284 (9%) Query: 69 TTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK 127 T+++ LI+++++ + + ++ +S+ + + ++ +T HI++ Sbjct: 4 TSIQELINKWQQYLILQKNYSHHTVVSYNNDLKHFLEFMHYYNSDLVTINHIKTADIRLI 63 Query: 128 HTP-----------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176 + SS + L++++ +K+ + + + S++ PK+ + ++ Sbjct: 64 RSWLAKRNCNNFTTSSISRGLSAVKNFYKFLEKTTQLNSHIIFSIKSPKKTKLLPKSLSE 123 Query: 177 ED-------MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229 +D ++++ + + + + +GLR S++ HLQN F K Sbjct: 124 DDVVISLKHIEEYGNVKWVELRNKALLVLIYATGLRISEALSITKLHLQNLEFIRIIGKG 183 Query: 230 GTIITVELPD-------GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282 + ++++L E F +K+ T F+ G+ Sbjct: 184 SKERIIPWLPIVKNLITQYLEILPYKLGENEPIFRGKQGKKLQPTVFNRELIKLKRFYGL 243 Query: 283 --NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 + +AH R A+ + GA + G K++ + YTK Sbjct: 244 PEHLTAHSFRHSFASHLLEHGADLRSIQELLGHKSLSTTQNYTK 287 >gi|34223075|sp|Q9KJF6|XERC_STAAU RecName: Full=Tyrosine recombinase xerC gi|9622622|gb|AAF89877.1| putative site-specific recombinase XerC [Staphylococcus aureus] Length = 298 Score = 106 bits (264), Expect = 6e-21, Method: Composition-based stats. Identities = 38/267 (14%), Positives = 93/267 (34%), Gaps = 24/267 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH------TPSSAIQFLT 138 + + ++ S++ Q + + + T R + +S + ++ Sbjct: 16 RNFSEHTLKSYQDDLIQFNQFLEQEHLQ-LNTFEYRDARNYLSYLYLNHLKRTSVSRKIS 74 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF----KSFWSEGSQPRL 194 ++R L+++ + + INP + + PK++ + +E+M+ + S+ + R+ Sbjct: 75 TLRTLYEYWMTLDENIINPFVHLVHPKKEKYLPQFSLEEEMEALFTTVEKDTSKNLRDRV 134 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVE--------LPDGFMKL 244 E L +G+R S+ Q + N ++ K V + + Sbjct: 135 ILELLYATGIRVSELVNIKKQDIDFYANGVTV-LGKGSKERFVPFGAYCRQSIENYLEHF 193 Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK-AGV-NKSAHGVRKFSATISADAGA 302 + + +N + + + AGV H +R AT + GA Sbjct: 194 KPIQSCNHDFLILNMKGEAITERGVRYVLNDIVKRTAGVSEIHPHKLRHTFATHLLNQGA 253 Query: 303 TAHELMATYGWKTVDQAETYTKGADRI 329 + + G + YT +++ Sbjct: 254 DLRTVQSLLGHVNLSTTGKYTHVSNQQ 280 >gi|307293405|ref|ZP_07573251.1| integrase family protein [Sphingobium chlorophenolicum L-1] gi|306881471|gb|EFN12687.1| integrase family protein [Sphingobium chlorophenolicum L-1] Length = 305 Score = 106 bits (264), Expect = 6e-21, Method: Composition-based stats. Identities = 50/285 (17%), Positives = 97/285 (34%), Gaps = 21/285 (7%) Query: 72 KWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-T 129 LI + + + N+ +++ + G T I + Sbjct: 5 AALIDRFLEMMAAERGASRNTLLAYRADLTGAGEIVGGLSGA--TKDRIADLTMAWAELA 62 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---- 185 SS + +++R + + + NP ++ RP + + + +++ + Sbjct: 63 ASSVARKSSALRAFYAFLEEEGLRPDNPSAALPRPVTRRSLPKILSTQEVDSLFALIAGK 122 Query: 186 ----WSEGSQPRLA--FEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIITVELP 238 RL+ E L SGLR ++ + L ++ F I K G V + Sbjct: 123 LAVEHPSPLDLRLSALIELLYGSGLRATELVSLPRRALASDRPFLILKGKGGRERLVPIS 182 Query: 239 DGFMKLLAMTP---IGKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKF 292 D +A+ + + K ++ + KA A AG+ S H +R Sbjct: 183 DRARAAVAVWLHHVPADSLWLFPSGKSHVSRIRLYQMVKALAAAAGIAPERVSPHVLRHA 242 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 AT + GA L + G + + YT R + + NSR Sbjct: 243 FATHLLEGGADLRALQSMLGHADIGTTQIYTHVDSRRLVELVNSR 287 >gi|332184082|gb|AEE26336.1| site-specific recombinase, phage integrase family [Francisella cf. novicida 3523] Length = 375 Score = 106 bits (264), Expect = 6e-21, Method: Composition-based stats. Identities = 39/277 (14%), Positives = 95/277 (34%), Gaps = 14/277 (5%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR-----SGVE 124 TL+ I+++ W + + + E + + K D +++ K + + Sbjct: 98 TLREYINDFY--YDWYNKNNKNTKALEFSLGRRLEKIMDKSLKELNDKKVMIKYLNDYQK 155 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 K + ++ + L++++ +F A Y+ N V+ K +R + + +F Sbjct: 156 INKTSDATYNRMLSTLKGMFSRAYEFGYIETNNIKDVKLLKINATKVRYLSSSETTRFFE 215 Query: 185 FWSEGS--QPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQ--KTGTIITVELP 238 + Q + Y+G+R S+ + +K++ K+ + + + Sbjct: 216 SLELITSQQAKEIIIIAYYTGMRKSEILTLTFDDIDFDTKQIVLKSENTKSSKVRYIPMH 275 Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISA 298 + +++L+ F++ K W K N H +R ++ Sbjct: 276 EKVLQILSNKNQKSGYIFVSEKTGKPYDNIDRSWTKLMKLSEIENFRFHDLRHNFCSMLV 335 Query: 299 DAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIK 334 G + + G V + Y D + I Sbjct: 336 MKGVPIYTVAQLAGHADVKTTQIYAHLSPDVKKSAID 372 >gi|325123125|gb|ADY82648.1| site-specific tyrosine recombinase [Acinetobacter calcoaceticus PHEA-2] Length = 295 Score = 106 bits (264), Expect = 6e-21, Method: Composition-based stats. Identities = 49/274 (17%), Positives = 94/274 (34%), Gaps = 27/274 (9%) Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESR----KHTPS 131 + K + + ++ ++E + D R I +R + R + + S Sbjct: 2 WLKERKIQNQSEHTITAYERDVKSFLEFCEHKQLDLRNIEASDLREYLAQRVEQDQLSSS 61 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG-- 189 S + LTS+R KWA + +Y+ INP + ++ E + Q Sbjct: 62 SMQRHLTSIRQFMKWAEQGKYLEINPTDDFKLKRQPRPLPGMIDIETVNQILDQPMPEKP 121 Query: 190 ------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-----ELP 238 + + E L SGLR ++ V+ + N ++ G + + Sbjct: 122 VDQQLWLRDKAMLELLYSSGLRLAELQGLTVKDVDFNRQLVRITGKGNKTRIVPFGKKAK 181 Query: 239 DGFMKLLAMTPIGKETF------FINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVR 290 + + L + I K F FI+ + Q K +A +AGV + H +R Sbjct: 182 ESLLNWLKVYKIWKGHFDQNDSVFISLRGGALTPRQIEKRVKLQAQRAGVNVDLHPHLLR 241 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK 324 A+ + + G + + YT Sbjct: 242 HCFASHMLSSSGDLRSVQEMLGHSNLSTTQIYTH 275 >gi|296161400|ref|ZP_06844207.1| tyrosine recombinase XerC [Burkholderia sp. Ch1-1] gi|295888386|gb|EFG68197.1| tyrosine recombinase XerC [Burkholderia sp. Ch1-1] Length = 307 Score = 106 bits (264), Expect = 6e-21, Method: Composition-based stats. Identities = 43/279 (15%), Positives = 88/279 (31%), Gaps = 30/279 (10%) Query: 75 ISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTP 130 I+ Y + H L+ ++ + +++ + +T IR V T Sbjct: 7 IAAYLSNLEHERRLSAHTLRGYTHELEELKLLAKGRPLESLTAVDIRGAVSRAHAGGLTA 66 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQFKSFW 186 S L++ R ++W + + NP +V PK+ + + +D M+ + Sbjct: 67 RSISHRLSAWRAFYRWLAGRVDLPANPVATVRAPKQAKTLPKALSVDDATRLMESPPAAS 126 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRA-------------GVQHLQNNIFSIKTQKTGTII 233 EG + E SGLR ++ G L + + + + Sbjct: 127 PEGLRDHAMLELFYSSGLRLAELVGLDARFADADGYRSAGWLKLDSAEVEVLGKGNRRRV 186 Query: 234 TVELPDGFMKLLAMTPIGKET-------FFINNDKQKMNATQFSIWFKAKATKAGVNK-- 284 L A + + F++ +++ K A AG+ Sbjct: 187 VPVGSKALEALGAWLAVRDQMVKHDPHPLFLSARGNRLSPNVVRERVKRAALVAGIPANV 246 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 H +R AT + + G ++ + YT Sbjct: 247 HPHVLRHSFATHVLQSSGDLRAVQELLGHASITATQVYT 285 >gi|226952079|ref|ZP_03822543.1| site-specific tyrosine recombinase [Acinetobacter sp. ATCC 27244] gi|226837171|gb|EEH69554.1| site-specific tyrosine recombinase [Acinetobacter sp. ATCC 27244] Length = 310 Score = 106 bits (264), Expect = 6e-21, Method: Composition-based stats. Identities = 46/286 (16%), Positives = 96/286 (33%), Gaps = 28/286 (9%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGVESR----K 127 L+S + K + + ++ +++ + + + +R + SR + Sbjct: 11 LLSMWLKERVIQNQSAHTISAYQRDLTDFFKFCEYKQLQLEDVEASDLREYLASRVEQDQ 70 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + SS + LTS+R KWA + Y+ NP + ++ E + Q + Sbjct: 71 LSSSSLQRHLTSIRQFMKWAAQGRYLQHNPSADFKLKRQPRPLPGMIDIETVNQILDQTA 130 Query: 188 EG--------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---- 235 + + E L SGLR ++ ++ + N ++ G + Sbjct: 131 PEKLIDQQLWLRDKAMLELLYSSGLRLAELQGLTIKDIDFNRQLLRITGKGNKTRIVPFG 190 Query: 236 -----ELPDGFM--KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSA 286 L + ++ FI+ + + Q K +A +AGV + Sbjct: 191 LKAKQSLIEWLKIYRIWQGGFTADSAVFISQQGRALMPRQIENRVKLQAQRAGVNVDLHP 250 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 H +R A+ A + G + + YT D +L Sbjct: 251 HLLRHCFASHMLSASGDLRSVQEMLGHSNLSTTQIYTH-VDFDQLA 295 >gi|312963818|ref|ZP_07778289.1| Tyrosine recombinase [Pseudomonas fluorescens WH6] gi|311281853|gb|EFQ60463.1| Tyrosine recombinase [Pseudomonas fluorescens WH6] Length = 299 Score = 106 bits (264), Expect = 6e-21, Method: Composition-based stats. Identities = 41/284 (14%), Positives = 96/284 (33%), Gaps = 23/284 (8%) Query: 85 GSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIR---SGVESRKHTPSSAIQFLT 138 ++ ++ ++ +++ K ++ + + +R + + + + S + L+ Sbjct: 16 RQVSPHTLEAYRRDLNKVLAYCEKQQVSSWKSLDIQALRSLIARLHQQGQSSRSLSRLLS 75 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRL 194 ++R L+ + R+ +P + PK + + + Q E + + Sbjct: 76 AVRGLYHYLNREGLCDHDPANGLSPPKGERRLPKTLDTDRALQLLDGAVEDDFLAHRDQA 135 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-ELPDGFMKLL-------A 246 E SGLR S+ + L ++ G+ V + + L A Sbjct: 136 ILELFYSSGLRLSELTGLNLDQLDLADGLVQVLGKGSKTRVLPVGRKAREALQLWLPLRA 195 Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAK-ATKAGVNKSAHGVRKFSATISADAGATAH 305 + + FI+ +++ + KA + G N H +R A+ ++ Sbjct: 196 LANPQDDAVFISQQGRRLGPRAIQVRVKAAGERELGQNLHPHMLRHSFASHLLESSQDLR 255 Query: 306 ELMATYGWKTVDQAETYTKGADRIRLG---IKNSRRISSVVDSD 346 + G + + YT D L R + DSD Sbjct: 256 AVQELLGHSDIKTTQIYTH-LDFQHLATVYDSAHPRAKRIKDSD 298 >gi|160880725|ref|YP_001559693.1| integrase family protein [Clostridium phytofermentans ISDg] gi|160429391|gb|ABX42954.1| integrase family protein [Clostridium phytofermentans ISDg] Length = 291 Score = 106 bits (264), Expect = 6e-21, Method: Composition-based stats. Identities = 32/260 (12%), Positives = 78/260 (30%), Gaps = 19/260 (7%) Query: 85 GSLAVNSRISFESYFDQII------RKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLT 138 + N+ ++ + S + E + ++ + L Sbjct: 16 KNATDNTLSAYRIDLKRWYLFLQENSVSESKKITETMINSFLLQQEKEGKSKATVNRNLV 75 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----QQFKSFWSEGSQPRL 194 S+R + ++ + +P ++ PK + R TKE + S G + + Sbjct: 76 SIRSFLFYLMKHGKLIGDPTERIKPPKVEIAPPRYLTKEQVLSLLSAPDSNTKRGLRDKA 135 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKE- 253 E + +G++ S+ + + + ++ V L ++ Sbjct: 136 MLELMYATGMKVSEIGGLKKEDINLKFGCVTVRELKKNRVVPFGQAARASLEAYLASEDD 195 Query: 254 ------TFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAH 305 F+ + M K + G+ + + +R A + GA + Sbjct: 196 VRKESPYLFLGRQGEPMTRQGVWKIMKYYGKQIGLEEDLTPQAIRNSFAIHMIENGADLN 255 Query: 306 ELMATYGWKTVDQAETYTKG 325 + G + + YTK Sbjct: 256 SMKELMGHANITATQHYTKQ 275 >gi|215226|gb|AAA32256.1| integrase [Mycobacterium phage L5] gi|2739060|gb|AAC31622.1| L5-integrase [Cloning vector pUC-GM-INT] gi|2739066|gb|AAC31625.1| integrase [unidentified cloning vector] gi|77632626|gb|ABB00291.1| integrase [Integrative shuttle vector pCONINT] gi|302749823|gb|ADL66916.1| integrase [Cloning vector pMC1s::WT-HIV2Pr] Length = 332 Score = 106 bits (264), Expect = 6e-21, Method: Composition-based stats. Identities = 53/319 (16%), Positives = 114/319 (35%), Gaps = 41/319 (12%) Query: 54 STPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYR 112 K+ ++ + T KWL+ LA +R + + ++ I G+ Sbjct: 24 DRAKKAAASAITLEEYTRKWLVER--------DLADGTRDLYSGHAERRIYPVLGEVAVT 75 Query: 113 KITTKHIRSGVESRKHT-PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171 ++T +R+ P++ +R + AV + +A NPC +E+ + Sbjct: 76 EMTPALVRAWWAGMGRKHPTARRHAYNVLRAVMNTAVEDKLIAENPCR-IEQKAADERDV 134 Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS--IKTQKT 229 T E++ + R+A L ++ LR + + + ++ + ++ ++ Sbjct: 135 EALTPEELDIVAA--EIFEHYRIAAYILAWTSLRFGELIELRRKDIVDDGMTMKLRVRRG 192 Query: 230 GTII----------------TVELPDGFMKLLAMTPIGK-------ETFFINN-DKQKMN 265 + + V +P +++ + E F + +++ Sbjct: 193 ASRVGNKIVVGNAKTVRSKRPVTVPPHVAEMIRAHMKDRTKMNKGPEAFLVTTTQGNRLS 252 Query: 266 ATQFSIWFKA-KATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 + F+ K A H +R AT +A AGAT ELMA G T A Y Sbjct: 253 KSAFTKSLKRGYAKIGRPELRIHDLRAVGATFAAQAGATTKELMARLGHTTPRMAMKYQM 312 Query: 325 GAD-RIRLGIKNSRRISSV 342 ++ R + +++ Sbjct: 313 ASEARDEAIAEAMSKLAKT 331 >gi|310766353|gb|ADP11303.1| site-specific tyrosine recombinase XerC [Erwinia sp. Ejp617] Length = 351 Score = 106 bits (264), Expect = 6e-21, Method: Composition-based stats. Identities = 46/289 (15%), Positives = 103/289 (35%), Gaps = 32/289 (11%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFE---SYFDQIIRKSGDFDYRKITTKHIRSGV--- 123 TL+ L + + + + F G +++ + S Sbjct: 20 TLRQLTESWLSHLAAAGRSPRTVQGYGERVRAFLAWCEPRGIRYAPQVSLAVLESYQRWL 79 Query: 124 ------ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI-RPWTK 176 + ++ +S + LT++R+LF+W +++ + NP + PK + + +++ Sbjct: 80 QGYRKADGKQLVVNSQLGVLTAIRMLFRWLLQRHVILYNPAELLALPKEERRLPAQVFSE 139 Query: 177 ED----MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTG 230 ++ +Q + G + R E L SG+R S+ + + + +++ K G Sbjct: 140 DETRRVLQSLDAGTPPGLRNRAILELLWSSGIRRSELAGLMLSDVDFTRGVVNVRRGKGG 199 Query: 231 TIITVEL----PDGFMKLLA------MTPIGKETFFINNDKQKMNATQFSIWF-KAKATK 279 V + + L FI++ + + +A Sbjct: 200 KERVVPVGHAALIWLGRYLKDVRPRLAQRFDSGHLFISHKGTGLAHGTLTAMAGRAIRDG 259 Query: 280 AGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 A + K+ H R AT + GA + A G + ++ + YT+ A Sbjct: 260 AHLKKAGACHIFRHSMATQMLENGADTRHIQAILGHEKLETTQIYTRVA 308 >gi|228990374|ref|ZP_04150339.1| Integrase/recombinase [Bacillus pseudomycoides DSM 12442] gi|228768900|gb|EEM17498.1| Integrase/recombinase [Bacillus pseudomycoides DSM 12442] Length = 306 Score = 106 bits (264), Expect = 6e-21, Method: Composition-based stats. Identities = 44/282 (15%), Positives = 94/282 (33%), Gaps = 31/282 (10%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYF---DQIIRKSGDFDYRKITTKHIRSGVE--- 124 LK+ + ++++ + +L+ + S+ + + + D R I ++S + Sbjct: 3 LKFAMKDFKEEKEFANLSPRTIQSYMATLHEFQEFCSERELIDTRDIREATVKSYLMYCQ 62 Query: 125 -SRKHTPSSAIQFLTSMRVLFKWAVRQEYV--AINPCLSVERPKRKTEGIRPWTKEDMQQ 181 +R + + L +++ F + ++ + NP ++ K + I + E ++Q Sbjct: 63 KTRGNNVVTRNTKLHHLKIFFNYLQHEDIISEKENPIRKMKLAKEDIK-IEVFQDEHIKQ 121 Query: 182 FKSFWSE---------GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGT 231 ++ + FLL +G R + L ++ K Sbjct: 122 MLRYYRRLKTRNKSFYAYRDHTIIIFLLGTGSRLGELINIRWSELDLVNQTVTLFGKARK 181 Query: 232 IITVELPDGFMK--------LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK---A 280 TV L + +K + E F + ++M+ + FK + Sbjct: 182 QQTVPLTNKLVKEFCEYKVFMERELGRLPEYVFTTREGKQMSPNSVKLIFKRLKQVMNFS 241 Query: 281 GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 V SAH R A AG L + E Y Sbjct: 242 DVRLSAHTFRHTFAHRCLMAGMDVFTLQRMLRHSNLRMTERY 283 >gi|326570632|gb|EGE20668.1| tyrosine recombinase subunit XerC [Moraxella catarrhalis BC7] gi|326574796|gb|EGE24730.1| tyrosine recombinase subunit XerC [Moraxella catarrhalis O35E] Length = 330 Score = 106 bits (264), Expect = 6e-21, Method: Composition-based stats. Identities = 46/297 (15%), Positives = 105/297 (35%), Gaps = 30/297 (10%) Query: 58 REYINSPRKKPTTLKW-LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDY----- 111 +S + P++ W +S + + + ++ ++++ Q +Y Sbjct: 9 APTHSSHQSDPSSPAWGYLSSWCDELRLQNYSKHTITTYQTALIQFFNFLESDNYLGGDP 68 Query: 112 ----RKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167 R+ T+ + +E K P SA L+++R+ +++ ++Q +A+NP + Sbjct: 69 LACRRQDLTRFFSTRLEEEKIKPISAKLSLSAIRIFYQFLIKQGVIAVNPTTGYKIKSAP 128 Query: 168 TEGIRPWTKEDMQQFKS-FWSEGS-------QPRLAFEFLLYSGLRCSDS--CRAGVQHL 217 + + ++Q E + + + FE + SGLR S+ G + Sbjct: 129 RKLPTVADELLIKQLLDQKTPEDTAKAYLWIRDKAMFELMYSSGLRLSELAGLNMGDVNF 188 Query: 218 QNNIFSI-------KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINND-KQKMNATQF 269 I + + G + L D + FI+ +++ Sbjct: 189 DTGIVRVLGKGNKTRQVPVGKKAMIALQDYLPHRNLWQKKNCKALFISERHGTRLSTRAI 248 Query: 270 SIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 + K AT AG+ + H +R A+ + + G + + + YT Sbjct: 249 QLRLKVCATMAGIELNMYPHLLRHCFASHVLSSSGDLRAIQEMLGHQNISTTQIYTH 305 >gi|303248297|ref|ZP_07334559.1| integrase family protein [Desulfovibrio fructosovorans JJ] gi|302490322|gb|EFL50234.1| integrase family protein [Desulfovibrio fructosovorans JJ] Length = 331 Score = 106 bits (264), Expect = 6e-21, Method: Composition-based stats. Identities = 50/292 (17%), Positives = 103/292 (35%), Gaps = 32/292 (10%) Query: 62 NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK-----SGDFDYRKITT 116 + +P T+ + Y + + + ++ DQ K+ Sbjct: 13 PATPARPETVAAFLD-YLAAQ--KGYSPATLAAYGVDLDQFEEFLRGRGISLATPEKVAR 69 Query: 117 KHIR---SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173 +H R + + R+ +S + L+++R F++ +R++ VA +P ++ PK + Sbjct: 70 EHGRGFLAELHRRREAKTSMGRKLSALRGFFRYMLRKKLVAADPLAGLKNPKTDKRQPKA 129 Query: 174 WTKEDMQQFKSFWS---------EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224 ++ S E + E L SGLR +++ + + Sbjct: 130 LNVDEAVALVSPAPGAPAADGSREACRDLALAELLYGSGLRVAEAVGLDLDDVSIAQGVA 189 Query: 225 KT-QKTGTIITVELPDGFMKLLA---------MTPIGKETFFINNDKQKMNATQFSIWFK 274 + K G L D + L ++ FF+ + ++N Q + Sbjct: 190 RVYGKGGKERLAPLSDASRERLREYAMRRAEFTPDPREQAFFLGSRGGRLNRRQAARIVD 249 Query: 275 AKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 A A +AG+ K H +R AT ++GA + G + + YT Sbjct: 250 ALAREAGIAKHTHPHMLRHSFATHLLESGADMRSVQELLGHARLSTTQRYTH 301 >gi|189461054|ref|ZP_03009839.1| hypothetical protein BACCOP_01701 [Bacteroides coprocola DSM 17136] gi|265753998|ref|ZP_06089353.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] gi|189432144|gb|EDV01129.1| hypothetical protein BACCOP_01701 [Bacteroides coprocola DSM 17136] gi|263235712|gb|EEZ21236.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] Length = 376 Score = 106 bits (264), Expect = 6e-21, Method: Composition-based stats. Identities = 43/232 (18%), Positives = 84/232 (36%), Gaps = 23/232 (9%) Query: 127 KHTPSSA---IQFLTSMRVLFKWAVRQEYVAINP---CLSVERPKRKTEGIRPWTKEDMQ 180 K P +A + AVR + + NP E+PK T E+++ Sbjct: 154 KGKPIAASTRNTYYQIFNGALNAAVRAKRLLRNPFNEMEKSEKPKMPESVRSYMTIEEVR 213 Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT----QKTGTIITVE 236 + + + + A+ F + GLR SD +++ + + QKT I + Sbjct: 214 ALIATPVQDGRVKNAYLFSCFCGLRISDIVGLKWKNVFVDNGQYRLAVAMQKTKEPIYLP 273 Query: 237 LPDGFMKLL--AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKF 292 L + +K + + F + + + K A AG+ K + H R Sbjct: 274 LSNEALKWMPEREDKAADDHVF-------SLPSNINQYLKPWAEAAGITKRFTFHTARHT 326 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344 AT+ GA + + G +V + Y K ++ + + ++ + D Sbjct: 327 FATMMLTLGADLYTVSKLLGHTSVRMTQVYAKIINQKK--DEAVNLVNGLFD 376 >gi|167760042|ref|ZP_02432169.1| hypothetical protein CLOSCI_02414 [Clostridium scindens ATCC 35704] gi|167662335|gb|EDS06465.1| hypothetical protein CLOSCI_02414 [Clostridium scindens ATCC 35704] Length = 331 Score = 106 bits (264), Expect = 6e-21, Method: Composition-based stats. Identities = 50/286 (17%), Positives = 99/286 (34%), Gaps = 21/286 (7%) Query: 72 KWLIS--EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129 W I EY S + + + +++ + R IT I + + K Sbjct: 51 SWAIDLEEYLMSKALEGKSPGTVDRYRYELQRLLSYV-NKAVRDITEGDISGYMRAYKAI 109 Query: 130 PSSAIQFLTSMRV----LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + Q L ++R F W ++ + NP VE K + + +P+T E+ + Sbjct: 110 RQVSNQTLKNVRAVYSSFFAWLRDRDRIRRNPMALVEAIKVEQKIRKPYTDEEREMLLRN 169 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ---NNIFSIKTQKTGTIITVELPDG-- 240 S + + EF + +R S+ ++ ++ K V L D Sbjct: 170 CST-LRDKAMMEFFYSTAVRVSELVTLNRDDIRFTSKDLIVF--GKGSKERRVYLNDRTN 226 Query: 241 --FMKLLAMTPIGKETFFINNDKQK--MNATQFSIWFKAKATKAGVNKS-AHGVRKFSAT 295 + L G ++ + ++ T + +AGV K+ H R+ S T Sbjct: 227 LYMKEYLDSRTDGSPALIVSIRRPHSRLSKTGIEDIIRRTGQRAGVEKAHPHRFRRTSLT 286 Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341 + + G E M G + Y D+ + + + +S+ Sbjct: 287 NALNRGMPLQEAMVMAGHAKPETTMGYC-TVDQEGVKYHHQKYLSA 331 >gi|255008144|ref|ZP_05280270.1| tyrosine type site-specific recombinase [Bacteroides fragilis 3_1_12] Length = 359 Score = 106 bits (264), Expect = 6e-21, Method: Composition-based stats. Identities = 42/232 (18%), Positives = 84/232 (36%), Gaps = 23/232 (9%) Query: 127 KHTPSSA---IQFLTSMRVLFKWAVRQEYVAINP---CLSVERPKRKTEGIRPWTKEDMQ 180 K P +A + AVR + + NP E+PK T E+++ Sbjct: 137 KGKPIAASTRNTYYQIFNGALNAAVRAKRLLRNPFNEMEKSEKPKMPESVRSYMTIEEVR 196 Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT----QKTGTIITVE 236 + + + + A+ F + GLR SD +++ + + QKT I + Sbjct: 197 ALIATPMQEGRVKNAYLFSCFCGLRISDIVGLKWKNVFVDNGQYRLAVAMQKTKEPIYLP 256 Query: 237 LPDGFMKLL--AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKF 292 L + +K + + F + + + + A AG+ K + H R Sbjct: 257 LSNEALKWMPEREDKAADDPVFNL-------PSNINQYLRPWAEAAGITKRFTFHTARHT 309 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344 AT+ GA + + G +V + Y K ++ + + ++ + D Sbjct: 310 FATMMLTLGADLYTVSKLLGHTSVRMTQVYAKIINQKK--DEAVNLVNGLFD 359 >gi|298531211|ref|ZP_07018611.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1] gi|298508821|gb|EFI32727.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1] Length = 394 Score = 106 bits (264), Expect = 6e-21, Method: Composition-based stats. Identities = 55/339 (16%), Positives = 114/339 (33%), Gaps = 25/339 (7%) Query: 7 LPPFVTKERTRHGKIIYYFRK----GHGRRIRLPYPHESTFIPAYMSALTGSTP------ 56 +P F+ + R+ GK YY R G ++ R+ T A A + Sbjct: 30 VPGFIMEVRS-TGKSTYYQRYRDKFGRLKQARIAPVDSITLEEARQKAKQIRSQTTMGFD 88 Query: 57 KREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKIT 115 R+ R P T K I + + + + S + +++ G+ +IT Sbjct: 89 PRDEAEKNRNTP-TFKEFIRD--QYIPYIQVHKRSWDQDSKMLELRVLPLWGNMKMSEIT 145 Query: 116 TKHIRSG---VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172 ++ P + +++ ++ +F A + + + P + R + R Sbjct: 146 RDDVQQFQSNFLRAGCKPGTVNRYMALVKYIFNLAEKWDVIEKTPARHISRLEDNNCKER 205 Query: 173 PWTKEDMQQFKSFWSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK----T 226 + E+ ++ + E L+ +G R S+ Q L Sbjct: 206 YLSSEETKRLLGELKNCKSQVVPDIIELLILTGARKSEVVNLPWQELDLKQGLWTIPPER 265 Query: 227 QKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKS 285 K T T+ L G +++L + N K F + AG+ + Sbjct: 266 NKAKTRKTIPLSQGALRILEKRKHNGSEYVFPNPKTGGPIKHFHNTWDRVRKNAGIPDVR 325 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R A++ ++G + +E+ G + + Y Sbjct: 326 IHDLRHNFASLLVNSGRSLYEVQKLLGHSNISTTQRYAH 364 >gi|47094600|ref|ZP_00232245.1| integrase/recombinase XerC [Listeria monocytogenes str. 4b H7858] gi|47017024|gb|EAL07912.1| integrase/recombinase XerC [Listeria monocytogenes str. 4b H7858] Length = 241 Score = 106 bits (264), Expect = 6e-21, Method: Composition-based stats. Identities = 32/221 (14%), Positives = 78/221 (35%), Gaps = 19/221 (8%) Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ- 181 ++ + + ++ + ++S+R + + +R+ + NP V K + + + E+M+ Sbjct: 4 LKQKSFSRTTVARKISSLRSFYTFLLRENVINENPFTYVSHAKNQLRLPKFFYSEEMEAL 63 Query: 182 ----FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVE 236 ++ + + R+ E L +G+R S+ + L + +I K V Sbjct: 64 FQVVYEDNETLTLRDRVLLEVLYGTGIRVSECAGILLPDLDTSYQAILIRGKGNKERYVP 123 Query: 237 L-----------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS 285 L++ + +N+ + +KA + + Sbjct: 124 FGVYAEDAITDYLPERANLMSRYKKSHDALLVNHYGDPLTTRGIRYCLSKIISKASLTRK 183 Query: 286 --AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R AT + GA + G ++ + YT Sbjct: 184 IHPHMLRHTFATDLLNNGADMRTVQELLGHASLSSTQIYTH 224 >gi|309389348|gb|ADO77228.1| integrase family protein [Halanaerobium praevalens DSM 2228] Length = 312 Score = 106 bits (264), Expect = 6e-21, Method: Composition-based stats. Identities = 44/273 (16%), Positives = 93/273 (34%), Gaps = 33/273 (12%) Query: 85 GSLAVNSRISFESYFDQIIRKS-------GDFDYRKITTKHIRSGVES----RKHTPSSA 133 + + + S +Q+ + DF ++ I + + + Sbjct: 24 KGYSQLTIKEYNSDLNQLHKYLKEELDFKADFKPAEVDRLDISEFLADAVIINDNKAVTR 83 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE-GIRPWTKEDMQQFKSFWSEG--- 189 + L ++R +K+ + V NP ++E K + ++ +QF + SE Sbjct: 84 NRKLFAIRSFYKYLLHYGIVNQNPAEAIESSKTEIRLEPIYLKLKEAKQFINAISENGGI 143 Query: 190 --SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELP-DGFMKLL 245 + + LY+GLR S+ +L SIK K V L D + + Sbjct: 144 NRLRDLAIVKLFLYAGLRISELVNLDFDNLDFEDCSIKFYGKGNKERYVPLHHDVILAIK 203 Query: 246 AMTP----------IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK----SAHGVRK 291 P ++ FI+ ++++ ++ K A K+G+ + + H +R Sbjct: 204 KYLPERNSIKIKENDARQAIFISRHGKRISPRTIQLFVKKYAKKSGLGRADKITPHKLRH 263 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTK 324 A+ + G + + YT Sbjct: 264 TFASTLYRQTKDIKVVQDLLGHANLSTTQIYTH 296 >gi|258405018|ref|YP_003197760.1| integrase family protein [Desulfohalobium retbaense DSM 5692] gi|257797245|gb|ACV68182.1| integrase family protein [Desulfohalobium retbaense DSM 5692] Length = 306 Score = 106 bits (264), Expect = 6e-21, Method: Composition-based stats. Identities = 43/264 (16%), Positives = 94/264 (35%), Gaps = 24/264 (9%) Query: 85 GSLAVNSRISFESYFDQ----IIRKSGDFD----YRKITTKHIRSGVESRKHTPSSAIQF 136 + + ++ +Q + R+ D D + + + + + SS + Sbjct: 22 RGASPATVRAYRRDLEQFEAVLRRRGLDMDRPQQIDREAVQGFAADLHRQGLRRSSVSRK 81 Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQP 192 L+++R F++ +++++V NP SV PK++ + T E + +G + Sbjct: 82 LSAVRRFFRFCLQRQWVDTNPAHSVANPKQEVRHPKVLTVEQALELMDTHLPNDPKGCRD 141 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLLAM---- 247 E L SGLR S++ + + ++ K G L + L Sbjct: 142 LALAELLYGSGLRISEALQLDIDDIEPGRGVVRVVGKGGKERLAPLTEPGQSRLRRYLEQ 201 Query: 248 -----TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300 + F+ +++ + + + AG+ + S H +R AT + Sbjct: 202 RRAFVVDPQEPALFLGLRGKRLQRREANRILARLSQTAGLPEEISPHVLRHSFATHLLRS 261 Query: 301 GATAHELMATYGWKTVDQAETYTK 324 GA + G + + YT Sbjct: 262 GADLRSVQELLGHSRLSTTQRYTH 285 >gi|237667473|ref|ZP_04527457.1| phage integrase family protein [Clostridium butyricum E4 str. BoNT E BL5262] gi|237655821|gb|EEP53377.1| phage integrase family protein [Clostridium butyricum E4 str. BoNT E BL5262] Length = 328 Score = 106 bits (264), Expect = 6e-21, Method: Composition-based stats. Identities = 42/240 (17%), Positives = 89/240 (37%), Gaps = 24/240 (10%) Query: 111 YRKITTKHIRSGVE----SRKHTPSSAIQFLTSMRVLFKWAV-RQEYVAINPCLSVERPK 165 + I + + + + R ++ + + + +++ FK+ + + ++ NP + +E PK Sbjct: 75 LKSIKLRDLYAFLSFVEKYRNNSSYARARKVATLKSFFKYLFGKAKIISDNPAMELESPK 134 Query: 166 RKTEGIRPWT----KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI 221 T ++ ++ F L G+R S+ C ++ ++ +I Sbjct: 135 INKRHPVYLTLNQSIALLESLDKDDKNYARDYCILTFFLNCGMRLSELCGIQIEKIRGDI 194 Query: 222 FSIKTQKTGTIITVELPDGFMKLL----------AMTPIGKETFFINNDKQKMNATQFSI 271 SI K TV L + ++ L + K+ F++ +N I Sbjct: 195 LSI-VGKGDKERTVYLNEACLRALNNYLSVRDDSKASYENKKYLFLSARNAPINKRTVEI 253 Query: 272 WFKAKATKAGV---NKSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGAD 327 K T AG + H +R +AT+ G L + G + + + YT D Sbjct: 254 MIKKHITNAGFTGEKYTPHKLRHTAATLMYKYGNVDIRSLQSILGHENISTTQIYTHVDD 313 >gi|110799420|ref|YP_695812.1| site-specific tyrosine recombinase XerC [Clostridium perfringens ATCC 13124] gi|110674067|gb|ABG83054.1| site-specific recombinase, phage integrase family [Clostridium perfringens ATCC 13124] Length = 450 Score = 106 bits (264), Expect = 6e-21, Method: Composition-based stats. Identities = 43/248 (17%), Positives = 87/248 (35%), Gaps = 24/248 (9%) Query: 103 IRKSGDFDYRKITTKHIRSGVE----SRKHTPSSAIQFLTSMRVLFKWA-VRQEYVAINP 157 I GD + IT I + + R ++ + + + +++ FK+ + + + NP Sbjct: 188 ISDLGDNFIKDITLSDIYAFLAFLEKVRNNSAYARARKVATLKSFFKFLNSKIKLIDENP 247 Query: 158 CLSVERPKRKTEGIRPWTKED----MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAG 213 + +E PK T + + + L G+R S+ C Sbjct: 248 TVELESPKINKRHPVYLTLDQSITVLNSMDKENKNYYRDYCILTLFLNCGMRLSELCNIE 307 Query: 214 VQHLQNNIFSIKTQKTGTIITVELPDGFMKLL----------AMTPIGKETFFINNDKQK 263 ++ ++ + +I K TV L + + + T K+ F+++ + Sbjct: 308 IEKIKGDTLTII-GKGNKERTVYLNEASIAAIENYLKNRNDSKATEEAKKYLFLSSKYRP 366 Query: 264 MNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQA 319 +N I K AG + H +R +AT+ G L G + + Sbjct: 367 INKRSVEILVKKHIENAGFKDQKYTPHKLRHTAATLMYKYGNVDIRSLQNILGHENISTT 426 Query: 320 ETYTKGAD 327 + YT D Sbjct: 427 QIYTHVDD 434 >gi|330815343|ref|YP_004359048.1| phage integrase [Burkholderia gladioli BSR3] gi|327367736|gb|AEA59092.1| phage integrase [Burkholderia gladioli BSR3] Length = 347 Score = 106 bits (264), Expect = 6e-21, Method: Composition-based stats. Identities = 46/284 (16%), Positives = 100/284 (35%), Gaps = 21/284 (7%) Query: 60 YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119 Y++ + T+ + Y K ++ S + G + ++ + + Sbjct: 50 YLSRAPSEKLTVSAALKRYMKEVSATK-KATTQRSESFSAKHLEAFFGKYSMAAVSAELV 108 Query: 120 RSGVESRKHTPSSAIQF---LTSMRVLFKWAVRQEY---VAINPCLSVERPKRKTEGIRP 173 + R S L + LF+ A+ QE+ + NP +V +P R Sbjct: 109 AKYRDERLAAGKSNNTVRLELAMLGHLFRMAI-QEWGIGLTFNPVANVRKPSPGAGRDRR 167 Query: 174 WTKEDMQQFKSFWSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKT 229 ++++ Q+ + S P L + +G+R S+ + + +++ K Sbjct: 168 LSRDEQQRLFAAADAHSNPMLGWIVRLAVETGMRSSEITGLCRSQVDLDRRVVTLRDTKN 227 Query: 230 GTIITVELPDGFMKLLAMT------PIGKETFFINNDKQ--KMNATQFSIWFKAKATKAG 281 G+ V L ++L PI + F + K F + G Sbjct: 228 GSSRMVPLTREAAEVLRAALDNPIRPIDTDLVFFGEPGRDGKRKPYVFQKLWAGIVRDLG 287 Query: 282 V-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 + + H +R + + +AG + E+ + G K++ + YT Sbjct: 288 MADLHFHDLRHEAVSRLVEAGLSDQEVASISGHKSMQMLKRYTH 331 >gi|182420557|ref|ZP_02643923.2| site-specific recombinase, phage integrase family [Clostridium perfringens NCTC 8239] gi|182379696|gb|EDT77175.1| site-specific recombinase, phage integrase family [Clostridium perfringens NCTC 8239] Length = 361 Score = 106 bits (264), Expect = 6e-21, Method: Composition-based stats. Identities = 44/248 (17%), Positives = 90/248 (36%), Gaps = 24/248 (9%) Query: 103 IRKSGDFDYRKITTKHIRSGVE----SRKHTPSSAIQFLTSMRVLFKWA-VRQEYVAINP 157 I GD + IT I + + R ++ + + + +++ FK+ + + + NP Sbjct: 99 ISDLGDNFIKDITLSDIYAFLAFLEKVRNNSAYARARKVATLKSFFKFLNSKIKLIDENP 158 Query: 158 CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAG 213 + +E PK T + + +G+ + L G+R S+ C Sbjct: 159 TVELESPKINKRHPVYLTLDQSITVLNSMDKGNKNYYRDYCILTLFLNCGMRLSELCNIE 218 Query: 214 VQHLQNNIFSIKTQKTGTIITVELPDGFMKLL----------AMTPIGKETFFINNDKQK 263 ++ ++ + +I K TV L + + + T K+ F+++ + Sbjct: 219 IEKIKGDTLTII-GKGNKERTVYLNEASIAAIENYLKNRNDSKATEEAKKYLFLSSKYRP 277 Query: 264 MNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQA 319 +N I K AG + H +R +AT+ G L G + + Sbjct: 278 INKRSVEILVKKHIENAGFKDQKYTPHKLRHTAATLMYKYGNVDIRSLQNILGHENISTT 337 Query: 320 ETYTKGAD 327 + YT D Sbjct: 338 QIYTHVDD 345 >gi|18310145|ref|NP_562079.1| site-specific tyrosine recombinase XerC [Clostridium perfringens str. 13] gi|18144824|dbj|BAB80869.1| probable integrase/recombinase [Clostridium perfringens str. 13] Length = 450 Score = 106 bits (264), Expect = 6e-21, Method: Composition-based stats. Identities = 44/248 (17%), Positives = 90/248 (36%), Gaps = 24/248 (9%) Query: 103 IRKSGDFDYRKITTKHIRSGVE----SRKHTPSSAIQFLTSMRVLFKWA-VRQEYVAINP 157 I GD + IT I + + R ++ + + + +++ FK+ + + + NP Sbjct: 188 ISDLGDNFIKDITLSDIYAFLAFLEKVRNNSAYARARKVATLKSFFKFLNSKIKLIDENP 247 Query: 158 CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAG 213 + +E PK T + + +G+ + L G+R S+ C Sbjct: 248 TVELESPKINKRHPVYLTLDQSITVLNSMDKGNKNYYRDYCILTLFLNCGMRLSELCNIE 307 Query: 214 VQHLQNNIFSIKTQKTGTIITVELPDGFMKLL----------AMTPIGKETFFINNDKQK 263 ++ ++ + +I K TV L + + + T K+ F+++ + Sbjct: 308 IEKIKGDTLTII-GKGNKERTVYLNEASIAAIENYLKNRNDSKATEEAKKYLFLSSKYRP 366 Query: 264 MNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQA 319 +N I K AG + H +R +AT+ G L G + + Sbjct: 367 INKRSVEILVKKHIENAGFKDQKYTPHKLRHTAATLMYKYGNVDIRSLQNILGHENISTT 426 Query: 320 ETYTKGAD 327 + YT D Sbjct: 427 QIYTHVDD 434 >gi|251789526|ref|YP_003004247.1| site-specific tyrosine recombinase XerC [Dickeya zeae Ech1591] gi|251789532|ref|YP_003004253.1| site-specific tyrosine recombinase XerC [Dickeya zeae Ech1591] gi|247538147|gb|ACT06768.1| integrase family protein [Dickeya zeae Ech1591] gi|247538153|gb|ACT06774.1| integrase family protein [Dickeya zeae Ech1591] Length = 369 Score = 106 bits (264), Expect = 6e-21, Method: Composition-based stats. Identities = 54/320 (16%), Positives = 105/320 (32%), Gaps = 32/320 (10%) Query: 49 SALTGSTPKREYINSPRKKPTTLKWLISEY---RKSAHWGSLAVNSRISFESYFDQIIRK 105 AL P P +L L+ + R+ +W + ++ + F + Sbjct: 9 DALLTVDEVYRKPIGPASDPKSLYALLLRFVVWRRERNWSETTLKTQTHHQYRFILWAAE 68 Query: 106 SGDFDYRKIT-------TKHIRSGVESRKH--TPSSAIQFLTSMRVLFKWAVRQEYVAIN 156 G R IT +H+ + + + L + V F W R + + Sbjct: 69 RGLHYGRDITLPILEHYQRHLYQYRKPNGEPLSTRTQRSQLGPLVVWFGWMTRHHLLLAD 128 Query: 157 PCLSVERPKRKTEGI-RPWTKEDMQQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCR 211 P + P+ + + D++Q + G + R E L +G+R + Sbjct: 129 PASGLVLPRLEKRLPRHILSVADVEQVLALPDLTTLQGIRDRALMELLWSTGIRRGEVAV 188 Query: 212 AGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLL-----AMTP-----IGKETFFINN 259 V + +I +I K + + ++ L A+ P F+ Sbjct: 189 LEVYSVDASRHIVTIVQGKGKKDRVIPVGQRALRWLTYYLQAVRPQLLVNPHCPALFVAL 248 Query: 260 DK-QKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTV 316 D + + + +G+ K S H R AT + GA + A G +V Sbjct: 249 DGIEGLTPNGITNLVSYYIKASGIAKWGSCHLFRHAMATQMLENGADLRWIQAMLGHASV 308 Query: 317 DQAETYTKGADRIRLGIKNS 336 + + YT+ + R + S Sbjct: 309 ESTQIYTQVSIRALQAVHAS 328 >gi|307692298|ref|ZP_07634535.1| site-specific tyrosine recombinase XerC [Ruminococcaceae bacterium D16] Length = 342 Score = 106 bits (264), Expect = 6e-21, Method: Composition-based stats. Identities = 49/292 (16%), Positives = 104/292 (35%), Gaps = 31/292 (10%) Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD-YRKITTKHIRSGVE 124 T+ + R + L R++ ++ FD+I D D R +T + + + Sbjct: 25 HSRATVDEYFLDLRSFFRFLKLDKG-RVAKDTPFDEISIDDVDLDLVRGVTLSDVYAYMN 83 Query: 125 ----SRKHTPSSAIQFL-----------TSMRVLFKWAV-RQEYVAINPCLSVERPKRKT 168 R P+S+ ++R +K+ + + + NP ++ P+ K Sbjct: 84 YLSRDRAVHPNSSDAHYGLAPAARARKAAAIRSFYKYLSSKAKLITENPMQDLDAPRLKK 143 Query: 169 EGIRPWTKEDMQQFKSFWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226 R ++ + S +Q R L GLR S+ V ++ + + Sbjct: 144 TLPRYLNLDESVELLSHVDGPNQVRDYCILTLFLNCGLRISELIGLNVTDVRGDQLRVLG 203 Query: 227 QKTGTIITV-------ELPDGFMKLLAMTPIGKETFFIN-NDKQKMNATQFSIWFKAKAT 278 + + L D M+ +T + + F+ ++Q++ K + Sbjct: 204 KGNKERVLFLNEACRSALDDWMMERSTLTLLDQNALFVTPRNRQRITRAAVHKLVKKHLS 263 Query: 279 KAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 AG++ S+H +R +AT+ G L G ++ + YT + Sbjct: 264 AAGLDSTKYSSHKLRHTAATLMLQNGVDVRTLQEVLGHDHLNTTQIYTHVDN 315 >gi|134298789|ref|YP_001112285.1| phage integrase family protein [Desulfotomaculum reducens MI-1] gi|134051489|gb|ABO49460.1| phage integrase family protein [Desulfotomaculum reducens MI-1] Length = 294 Score = 106 bits (264), Expect = 6e-21, Method: Composition-based stats. Identities = 39/277 (14%), Positives = 91/277 (32%), Gaps = 29/277 (10%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR------KSGDFDYRKITTKHIRSGVE 124 + I EY+K + + +++ ++ + + K + + Sbjct: 2 INSFILEYQK----QDRSPLTVAGYQTELEKFQQWLWTTVNEPLERATDMDVKDYKQYLL 57 Query: 125 S-RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 + +K PS+ + L +R + WAV Q + NP +V+ + + + + D + K Sbjct: 58 TVKKQKPSTVNRGLKVLRKYYSWAVIQGLIQYNPAANVKLVRVQQAAPKWLDRIDAARLK 117 Query: 184 SF-----WSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTI 232 + + R +L +GLR ++ + + + ++ K Sbjct: 118 RAVLNDEHNAFKRARDYAILLLMLGAGLRVAEVAALELADIIMSERKGTVIVRKGKGNKY 177 Query: 233 ITVEL-------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS 285 V L + ++ + TF ++ + + A K+ V S Sbjct: 178 AEVPLNKDVRQALNEYLDIRKTVKCSDSTFLFLGERGPIKKRAIQFRVEKYAGKSSVKAS 237 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 AH +R + G + + V+ Y Sbjct: 238 AHQLRHTFCKELINHGEPLNVVAHLSRHSDVNTTMRY 274 >gi|256840356|ref|ZP_05545864.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|256737628|gb|EEU50954.1| conserved hypothetical protein [Parabacteroides sp. D13] Length = 386 Score = 106 bits (264), Expect = 6e-21, Method: Composition-based stats. Identities = 49/261 (18%), Positives = 95/261 (36%), Gaps = 18/261 (6%) Query: 92 RISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFL----TSMRVLFKWA 147 R+ + + + K + R+ + + + A L +++ +F A Sbjct: 122 RVDKKDILLKDVSKDEICGFFDYMRNKYRNKRQIKTNGGRLADYTLLLFEETVKAIFNKA 181 Query: 148 VRQEYVAINPC---LSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR---LAFEFLLY 201 +R+ V NP +ER + T E++ +F + +E R LAF Sbjct: 182 MREGLVKFNPVHSLNKLERFHAPDKHREYLTPEELTRFLAVEAECENERTVQLAFGLSSM 241 Query: 202 SGLRCSDSCRAGVQHLQ--NNI--FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFI 257 + LR D ++ + + SI +KT + L + LL + Sbjct: 242 TALRLGDMQHLRWCDIKMIDGVPTISIIQRKTKRPAIIPLNEMAQSLLPPRTDDNPESLV 301 Query: 258 NNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKT 315 + +K + S + + KAG+ K H R +A+++ AGA + G + Sbjct: 302 FHLVKK--SDNVSKYVRRLKEKAGIEKDLTYHCSRHTTASLAISAGADISAVKDVLGHGS 359 Query: 316 VDQAETYTKGADRIRLGIKNS 336 + E Y K A ++ N Sbjct: 360 ITSTEVYAKVALEKKIEAVNL 380 >gi|83643202|ref|YP_431637.1| site-specific tyrosine recombinase XerC [Hahella chejuensis KCTC 2396] gi|83631245|gb|ABC27212.1| tyrosine recombinase XerC [Hahella chejuensis KCTC 2396] Length = 301 Score = 106 bits (264), Expect = 6e-21, Method: Composition-based stats. Identities = 42/269 (15%), Positives = 88/269 (32%), Gaps = 23/269 (8%) Query: 77 EYRKSAHWGSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSGV---ESRKHTP 130 Y S +V++ S+ ++ +G ++ + T +R + R Sbjct: 12 AYLHSER--RYSVHTVSSYNRDLRRVVAYCDANGVASWKDLHTPQLRQALSEFHRRGLGS 69 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK----SFW 186 S + L+++R +++ +R+ V NP V PK + +Q Sbjct: 70 RSLHRLLSTVRRFYEYLLRERLVYENPANGVRAPKMTKRLPATMDVDQAKQLLDSPVEEE 129 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE--------L 237 + + E SG+R S+ + HL + + K G V L Sbjct: 130 ELEIRDQAIAELFYTSGIRLSELAGLDLAHLDLSEGLARVLGKGGKERLVPVGGQARKAL 189 Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSAT 295 D ++ G+ F++ +++ + A K G + H R A+ Sbjct: 190 RDWLQARASLAVAGEPAVFVSLRGGRLSRRSIQERLRQWAQKKGFSGRLYPHLFRHSCAS 249 Query: 296 ISADAGATAHELMATYGWKTVDQAETYTK 324 ++ + G + + YT Sbjct: 250 HLLESSGDLRAVQELLGHADISTTQIYTH 278 >gi|302389856|ref|YP_003825677.1| integrase family protein [Thermosediminibacter oceani DSM 16646] gi|302200484|gb|ADL08054.1| integrase family protein [Thermosediminibacter oceani DSM 16646] Length = 323 Score = 106 bits (264), Expect = 6e-21, Method: Composition-based stats. Identities = 44/290 (15%), Positives = 93/290 (32%), Gaps = 46/290 (15%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQ----IIRKSGDFDYRKITTKHIRSGVESRK--- 127 I + + +L+ + S+E + K G + K+ T HIR ++ Sbjct: 8 IENFLLYCNAKNLSKRTIGSYEQSLRLFAQFLKEKYGIEEVSKVNTGHIRQYLDYLGKRG 67 Query: 128 --------------------------HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV 161 T + A L +++V F W + + NP + Sbjct: 68 KYTVIIDETKKEINNPENRQDFGQPLSTTTKANY-LRNLKVFFNWLYGEGEIPKNPVAKI 126 Query: 162 ERPKRKTEGIRPWTKEDMQQ----FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL 217 E+ K + + +P +++D+++ F G + + F+FLL +G R ++ + Sbjct: 127 EQIKPQRKVKKPLSEQDLKRIANCFVKSTFTGYRNYVIFKFLLDTGARIQETLSLTHNDI 186 Query: 218 QNNI--FSIKTQKTGTIITVELPDGFMKLLAMTP------IGKETFFINNDKQKMNATQF 269 +++ K V L ++ + + + F + + Sbjct: 187 DLKFRVVTLRNTKNKQERKVYLSPKMLQEMKNWLKYKERYVSSDLIFPTKRGTPLTVHSY 246 Query: 270 SIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319 + G++ S H +R A G L G V Sbjct: 247 EKQLRDAGKLVGIDISPHMLRNQFARYYILNGGNFPMLSKLLGHSDVKVT 296 >gi|289664010|ref|ZP_06485591.1| site-specific tyrosine recombinase XerC [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 305 Score = 106 bits (264), Expect = 6e-21, Method: Composition-based stats. Identities = 39/267 (14%), Positives = 91/267 (34%), Gaps = 27/267 (10%) Query: 85 GSLAVNSRISFESYFDQIIRKSGD-------------FDYRKITTKHIRSGV---ESRKH 128 ++ ++ ++ ++ + + D ++ + H+R V R Sbjct: 15 RQVSAHTLDAYRRDLAALVAWTAEHNTEDGAQQTATPLDTAQLDSAHLRQFVAAEHRRGL 74 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF--- 185 +P S + L++ R + W ++ +A +P ++ PK + + ++ + Sbjct: 75 SPKSLQRRLSACRSYYAWLLKHGRIASSPAAAMRAPKSPRKLPQVLDADEAVRLVEVPTD 134 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPD----G 240 G + R E SGLR S+ C + L ++ + K V + Sbjct: 135 APLGLRDRALLELFYSSGLRLSELCALRWRDLDLDSGLVMVLGKGSKQRLVPVGSHAIAA 194 Query: 241 FMKLLAMTPIGKET-FFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATIS 297 + L + +T F ++ I K A + G+ + H +R A+ Sbjct: 195 LREWLRDSGASADTHVFPGRAGGAISQRAVQIRIKQLAVRQGMFKDVHPHMLRHSFASHI 254 Query: 298 ADAGATAHELMATYGWKTVDQAETYTK 324 ++ + G + + YT Sbjct: 255 LESSGDLRGVQELLGHSDIATTQIYTH 281 >gi|258622840|ref|ZP_05717857.1| tyrosine recombinase XerC [Vibrio mimicus VM573] gi|258584901|gb|EEW09633.1| tyrosine recombinase XerC [Vibrio mimicus VM573] Length = 266 Score = 106 bits (264), Expect = 7e-21, Method: Composition-based stats. Identities = 32/243 (13%), Positives = 80/243 (32%), Gaps = 17/243 (6%) Query: 99 FDQIIRKSGDFDYRKITTKHIRSGV---ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAI 155 + + + G + ++ +R V + + SS L+S+R + + + + Sbjct: 1 MARYLAQMGLTSWPQLDAAWVRQLVVLGKRQGMKASSISTRLSSLRSFLDFLILRGELQA 60 Query: 156 NPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQPRLAFEFLLYSGLRCSDSCRA 212 NP V P+++ + ++M Q + R E + SGLR ++ Sbjct: 61 NPAKGVSAPRKQRPLPKNLDVDEMAQLLEVTDDDPLSIRDRAIMELMYGSGLRLAELVSI 120 Query: 213 GVQHL--QNNIFSIKTQKTGTIITVE-------LPDGFMKLLAMTPIGKETFFINNDKQK 263 V+ + ++ + + + + + + F++ + Sbjct: 121 DVKDVNLRDGEIRVIGKGNKERKVWFAGQAQEWVGNWLKLRSQLANSDETALFVSKLGTR 180 Query: 264 MNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321 ++ K V + S H +R AT ++ + G + + + Sbjct: 181 ISHRSVQKRMAEWGQKQAVASHISPHKLRHSFATHMLESSNNLRAVQELLGHENIATTQI 240 Query: 322 YTK 324 YT Sbjct: 241 YTH 243 >gi|258517018|ref|YP_003193240.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771] gi|257780723|gb|ACV64617.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771] Length = 321 Score = 106 bits (264), Expect = 7e-21, Method: Composition-based stats. Identities = 43/277 (15%), Positives = 86/277 (31%), Gaps = 24/277 (8%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK--ITTKHIRSGVESRK 127 + + + E+ + + + + R D D I + I + + Sbjct: 24 SWEEALQEFLLLKKAEGKSERTIKDYGYHIKHFFRLYPDTDLADAGILKRRIIDYMAE-E 82 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 P+ L M+ F W V++ + NP +R K ++ D++ K + Sbjct: 83 VKPAYYNNKLVYMKTFFNWCVKERVLIENPVKEFKRRKADERIVQF----DLELLKKLLA 138 Query: 188 E-------GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI----KTQKTGTIITVE 236 G + L SG+R ++ + + + + KT T+ Sbjct: 139 IPDQSTYPGLRDYALLLLQLDSGIRPKEALSLLISDVNFKSLEVYIRAENAKTRVSRTLP 198 Query: 237 LPD----GFMKLLAMTPIG--KETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVR 290 + KL+ + P F + + KM + K G + +R Sbjct: 199 ISPITAKAIQKLINVRPSDWNDVPIFCSCEGNKMLGNTWYKRLSKYGEKLGTKLYPYQLR 258 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 A G + L T G ++ + Y AD Sbjct: 259 HTFALEFLRNGGNSFALQKTLGHADLNMTKRYVSLAD 295 >gi|18479027|gb|AAL73390.1|AF416734_1 site-specific recombinase [Pseudomonas fluorescens] Length = 298 Score = 106 bits (264), Expect = 7e-21, Method: Composition-based stats. Identities = 36/273 (13%), Positives = 93/273 (34%), Gaps = 23/273 (8%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQII-----RKSGDFDYRKITT-KHIRSGVE 124 L R ++ ++ ++ ++++ + G + I + + + + Sbjct: 5 LDAYCEHLRSE---RQVSPHTLSAYRRDLEKVVGWCQKQNIGSWAALDIQRLRSLIARLH 61 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 + + S + L+++R L+ + R+ +P + PK + + + Q Sbjct: 62 QQGQSSRSLARLLSAVRGLYHYLNREGLCDHDPATGLAPPKGERRLPKTLNTDRALQLLE 121 Query: 185 FWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV----- 235 E + + E SGLR S+ + L ++ G+ + Sbjct: 122 GAVEDDFLAQRDQAILELFYSSGLRLSELTGLNLDQLDLADGMVQVLGKGSKTRLLPVGR 181 Query: 236 ---ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAK-ATKAGVNKSAHGVRK 291 E + ++ L A+T + F++ +++ + KA + G N H + Sbjct: 182 KAREALEQWLALRALTNPADDAVFVSQQGKRLGPRAIQLRVKAAGERELGQNLHPHML-H 240 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTK 324 A+ ++ + G + + YT Sbjct: 241 SFASHLLESSQDLRAVQELLGHSDIKTTQIYTH 273 >gi|88705870|ref|ZP_01103579.1| prophage integrase [Congregibacter litoralis KT71] gi|88699941|gb|EAQ97051.1| prophage integrase [Congregibacter litoralis KT71] Length = 399 Score = 106 bits (264), Expect = 7e-21, Method: Composition-based stats. Identities = 52/297 (17%), Positives = 99/297 (33%), Gaps = 19/297 (6%) Query: 48 MSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKS 106 A + +K T+K L ++ + +++ ++ D+ II Sbjct: 77 WLADVRRGGDPGAAKAEARKAPTVKELCVKFMEDYSRHRNKPSTQRGYQGNIDRNIIPIL 136 Query: 107 GDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAI--NPCLSVERP 164 G F + + + + ++ + P A + L+ +R +F A Y NPC + Sbjct: 137 GRFKVKDVKRADVATMMKKLDYKPGEANKALSVLRKMFNLAEIWGYRPDGSNPCRHIP-L 195 Query: 165 KRKTEGIRPWTKEDMQQFKSFWSEGSQPRL-------AFEFLLYSGLRCSDSCRAGVQHL 217 + R T +M + + RL A R S+ + + Sbjct: 196 YTGGKTTRLITDGEMAKLFKHLDQVEAERLVPYVIPLAIRLQFEFAARRSEIVLLEWEWI 255 Query: 218 Q--NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIG-KETFFINNDKQKMNATQFSIWFK 274 N KTG + + + +LL+ P + + + + + + ++ Sbjct: 256 DLENRRVVWPDSKTGGMSK-PMSEEAYRLLSTAPRQEGGRYVLPSPRNPLTHLTYGEYYG 314 Query: 275 AKA---TKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 AGV HG+R SAT A++G M KTV Y D Sbjct: 315 GWTRTLKAAGVTHVGTHGIRHRSATDIANSGIPVKVGMVLTAHKTVTMFMRYIHTED 371 >gi|171910181|ref|ZP_02925651.1| hypothetical protein VspiD_03395 [Verrucomicrobium spinosum DSM 4136] Length = 318 Score = 106 bits (264), Expect = 7e-21, Method: Composition-based stats. Identities = 35/262 (13%), Positives = 83/262 (31%), Gaps = 22/262 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGD-FDYRKITTKHIRSGV-ESRKH--TPSSAIQFLTSM 140 S + + ++ + + +T R + E K ++ ++ Sbjct: 40 RSASPKTLENYRHAMSTFRKSQPACMTWESLTPDDFRLYLYEQMKAELGRATIRLHFAAL 99 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF---------KSFWSEGSQ 191 R FK+ R+ + NP L V+ PK + + T ++ + + Sbjct: 100 RSFFKFLTRRRGLVKNPLLEVQLPKPEKKLPVVLTLSQVETLLNLPLNTPREKQAPAWAP 159 Query: 192 PR--LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-----ELPDGFMKL 244 R E +G+R S+ V+ + +++ G + + Sbjct: 160 ERDAAILELFYSTGVRISELASLNVEDVDVYSETLRVIGKGRKERICPVGGPAIRAMQRY 219 Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302 + + F + ++M + + +G+ + H +R AT + GA Sbjct: 220 QSRLGVYSGPLFRSKVGKRMTNQAINNVVEKYWKLSGLPVQVTPHKLRHSFATHLLNNGA 279 Query: 303 TAHELMATYGWKTVDQAETYTK 324 + G ++ + YT Sbjct: 280 DLRSVQTLLGHASLSTTQIYTH 301 >gi|94969888|ref|YP_591936.1| tyrosine recombinase XerD subunit [Candidatus Koribacter versatilis Ellin345] gi|94551938|gb|ABF41862.1| tyrosine recombinase XerD subunit [Candidatus Koribacter versatilis Ellin345] Length = 313 Score = 106 bits (264), Expect = 7e-21, Method: Composition-based stats. Identities = 40/274 (14%), Positives = 91/274 (33%), Gaps = 29/274 (10%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRKHTP---SSAIQFLTS 139 L+ S ++ Q + +R ++S + + L+S Sbjct: 22 KGLSRLSVSAYSKDMQQFAEFLAKRKRSLDAAKRQDVRDFLDSLFSNQLDGRTVARKLSS 81 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----------EG 189 R +K+ + + +P L++E P++ + + +++ Q Sbjct: 82 SRQFYKYLLLDRRIEHDPTLNIESPRQWKVLPKSLSADEVLQTLQGPPRVLDTKESQALA 141 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVEL----------- 237 + R E LR S+ ++ + ++ + + G V L Sbjct: 142 LRDRAMLEVFYAGALRVSEMIGVRMEDAKLDLGYMMVRGKGDKERIVPLGQSALVAVKSY 201 Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATIS 297 + ++L F+ +K++ + A + +G + S H +R AT Sbjct: 202 LESGREVLCAGKTS-PILFVGKGCRKLSRQRVWQMVSAASQASGRHASPHMLRHSCATHM 260 Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGA-DRIR 330 + GA + G + + YT A DR++ Sbjct: 261 VENGADLRTVQTILGHADISTTQIYTHLALDRLK 294 >gi|256423767|ref|YP_003124420.1| integrase family protein [Chitinophaga pinensis DSM 2588] gi|256038675|gb|ACU62219.1| integrase family protein [Chitinophaga pinensis DSM 2588] Length = 284 Score = 106 bits (264), Expect = 7e-21, Method: Composition-based stats. Identities = 35/273 (12%), Positives = 97/273 (35%), Gaps = 23/273 (8%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS- 132 I +++ ++++ + + + G +I+ I E P Sbjct: 4 YIIQFQNYLQQSGYGLSTQRMLPACVREFLEYGGFKSIVEISPGIIVLFYEWLHIRPLKY 63 Query: 133 ---------AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 ++ +++V F W + + NP ++ + + + E ++ Sbjct: 64 RSGALSGIMISHYVYALKVFFSWQESSDGLQYNPMSGLKFRRHASGRREALSVEVVEALF 123 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDG- 240 + + + ++ GLR S++ V+ + ++ + +++ K + + L Sbjct: 124 T-AAISMREKVMLHLFYSCGLRRSEAEMLNVRDVQVRHRLLYVRSGKGASRRVIPLTGKV 182 Query: 241 -------FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRK 291 + + K F +N + ++M+ + ++ K +AG+ S H +R Sbjct: 183 AGELGVYLEEYRKSGAVEKGAFMLNREGRRMSGSSYNRLLKGLVGRAGLWQGISLHYLRH 242 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTK 324 AT G + + G + ++ + Y K Sbjct: 243 SIATHLLQGGMSLEYVRDFLGHRHLEATQIYAK 275 >gi|317063575|ref|ZP_07928060.1| integrase/recombinase [Fusobacterium ulcerans ATCC 49185] gi|313689251|gb|EFS26086.1| integrase/recombinase [Fusobacterium ulcerans ATCC 49185] Length = 298 Score = 105 bits (263), Expect = 7e-21, Method: Composition-based stats. Identities = 43/272 (15%), Positives = 91/272 (33%), Gaps = 24/272 (8%) Query: 75 ISEYRKSAHWG-SLAVNSRISFES-------YFDQIIRKSGDFDYRKITTKHIRSGVESR 126 I ++ A +G + ++N+ S + Y I + + + ++ Sbjct: 12 IKDFLYYAEFGENKSLNTIKSLKKDLSQLSEYLKNIEKIEEASKITPVMLRGFIIALQKN 71 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + S + L+S+R FK+ ++ + NP + P + E T E++ + + Sbjct: 72 EVGKRSINRKLSSLRSFFKYLMKNNLIKNNPIEIINSPSFEAEKPDILTLEEINKLRDVI 131 Query: 187 ----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD--- 239 + G + RL E L SG+ ++ G Q + ++ V Sbjct: 132 NTDNANGLRDRLILELLYSSGITSTEMLSIGEQVFDLDSRTLLVSNGKANRYVFFSQRTR 191 Query: 240 -------GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290 K F+N +++ A +AG+ + S + R Sbjct: 192 EYFKRYVEAKKEKYGDKYNSSILFVNGSGSRLSDRSLRRIVDRYAARAGITREISPYSFR 251 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETY 322 A G + + L G T++ + Y Sbjct: 252 HTFAVHLLTKGMSLNFLQELMGHVTIESTKIY 283 >gi|257469328|ref|ZP_05633422.1| integrase family protein [Fusobacterium ulcerans ATCC 49185] Length = 294 Score = 105 bits (263), Expect = 7e-21, Method: Composition-based stats. Identities = 43/272 (15%), Positives = 91/272 (33%), Gaps = 24/272 (8%) Query: 75 ISEYRKSAHWG-SLAVNSRISFES-------YFDQIIRKSGDFDYRKITTKHIRSGVESR 126 I ++ A +G + ++N+ S + Y I + + + ++ Sbjct: 8 IKDFLYYAEFGENKSLNTIKSLKKDLSQLSEYLKNIEKIEEASKITPVMLRGFIIALQKN 67 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + S + L+S+R FK+ ++ + NP + P + E T E++ + + Sbjct: 68 EVGKRSINRKLSSLRSFFKYLMKNNLIKNNPIEIINSPSFEAEKPDILTLEEINKLRDVI 127 Query: 187 ----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD--- 239 + G + RL E L SG+ ++ G Q + ++ V Sbjct: 128 NTDNANGLRDRLILELLYSSGITSTEMLSIGEQVFDLDSRTLLVSNGKANRYVFFSQRTR 187 Query: 240 -------GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290 K F+N +++ A +AG+ + S + R Sbjct: 188 EYFKRYVEAKKEKYGDKYNSSILFVNGSGSRLSDRSLRRIVDRYAARAGITREISPYSFR 247 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETY 322 A G + + L G T++ + Y Sbjct: 248 HTFAVHLLTKGMSLNFLQELMGHVTIESTKIY 279 >gi|21910514|ref|NP_664782.1| putative integrase - phage associated [Streptococcus pyogenes MGAS315] gi|28876262|ref|NP_795429.1| putative integrase [Streptococcus pyogenes phage 315.2] gi|71910865|ref|YP_282415.1| integrase [Streptococcus pyogenes phage 5005.1] gi|21904713|gb|AAM79585.1| putative integrase - phage-associated [Streptococcus pyogenes phage 315.2] gi|71853647|gb|AAZ51670.1| phi5005.1 integrase [Streptococcus pyogenes phage 5005.1] Length = 362 Score = 105 bits (263), Expect = 7e-21, Method: Composition-based stats. Identities = 49/302 (16%), Positives = 95/302 (31%), Gaps = 27/302 (8%) Query: 48 MSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG 107 +A + ++ P+ T L ++ K + + I+ K Sbjct: 40 QAARETLISLQAELDKPKSS-MTFGALTDQWLKEYEKTVQCSTYLKTERNINKHILPKLD 98 Query: 108 DFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167 I I+ E + + L +R + AVR Y+ NP L + PK K Sbjct: 99 KVKIGDINPLLIQRLTEEWCNDLKYGGKILGLVRNILNLAVRYGYINNNPALPITPPKIK 158 Query: 168 TEG---IRPWTKEDMQQFKSFWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222 + +T + ++QF + F L ++G+R + L N Sbjct: 159 RKRKMNNNFYTLDQLKQFLELVEKTDNIEKIALFRLLAFTGIRKGELLALTWDDLNGNTL 218 Query: 223 SIKTQKTGTIITVEL------------------PDGFMKLLAMTPIGKETFFINNDKQKM 264 SI T T + +E+ + ++L P F + M Sbjct: 219 SINKAVTRTQVGLEIDVTKTKSSDRLISLDDETLEILLELHETFPTSTLMF-QSESGGIM 277 Query: 265 NATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TY 322 + W + + + HG R A++ ++G + ++ G + Y Sbjct: 278 TPSLPRKWLLQIIKGTDLPQITIHGFRHTHASLLFESGLSLKQVQHRLGHGDLQTTMNVY 337 Query: 323 TK 324 T Sbjct: 338 TH 339 >gi|258543858|ref|ZP_05704092.1| tyrosine recombinase XerC [Cardiobacterium hominis ATCC 15826] gi|258520898|gb|EEV89757.1| tyrosine recombinase XerC [Cardiobacterium hominis ATCC 15826] Length = 301 Score = 105 bits (263), Expect = 7e-21, Method: Composition-based stats. Identities = 39/261 (14%), Positives = 91/261 (34%), Gaps = 21/261 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----KHTPSSAIQFLTSM 140 A + ++ Q D D + + +++ + K++P++ Q ++ Sbjct: 15 RGKAAQTLATYRRLLYQFAEAHRDRDLHALEPRDLQNYLTKTLGGGKYSPATLNQHRAAL 74 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEG-IRPWTKEDM----QQFKSFWSEGSQPRLA 195 R ++W R + +P +++ P++ + T E + + + + Sbjct: 75 RSYYRWLHRLRGLPTDPAAALKLPRQARQPLPDALTPEQITTLLEAPATDNPNLIRDHTI 134 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLLAM------- 247 E +GLR ++ + L ++ I K G + + + LA Sbjct: 135 LELFYSAGLRLAELASLDNRDLGPDSEHHIIRGKGGVERLIFIGSKAREALARWQTVRGQ 194 Query: 248 --TPIGKETFFINNDKQKMNATQFSIWFKAKATK--AGVNKSAHGVRKFSATISADAGAT 303 + F+N + ++ ++ KA A + GVN H +R A+ + Sbjct: 195 LLKKADEPALFLNKNGGRLTERGIALRLKAYAAERLPGVNVHPHMLRHTFASHILQSSGD 254 Query: 304 AHELMATYGWKTVDQAETYTK 324 + G K + + YT Sbjct: 255 LRSVQELLGHKNLATTQIYTH 275 >gi|188587679|ref|YP_001921083.1| site-specific tyrosine recombinase XerC [Clostridium botulinum E3 str. Alaska E43] gi|188497960|gb|ACD51096.1| site-specific recombinase, phage integrase family [Clostridium botulinum E3 str. Alaska E43] Length = 329 Score = 105 bits (263), Expect = 7e-21, Method: Composition-based stats. Identities = 47/281 (16%), Positives = 102/281 (36%), Gaps = 29/281 (10%) Query: 75 ISEYRKSA----HWGSLAVNSRISFESYFDQIIRKSGDFDY-RKITTKHIRSGVE----S 125 I+ Y+K + L + F+ I D ++ + I + + + + Sbjct: 35 IAAYKKDLTIFFRFMKLYRGIVKDKKIEFEDIDITDIDDEFLKSIQLRDLYAFMSFIEKY 94 Query: 126 RKHTPSSAIQFLTSMRVLFKWAV-RQEYVAINPCLSVERPKRKTEGIRPWTKED----MQ 180 R ++ + + + +++ FK+ + + + NP +E PK T + + Sbjct: 95 RNNSTYARARKVATLKSYFKFLQGKAKIIVDNPTTELESPKINKRQPVYLTLDQSIHLLS 154 Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240 ++ L G+R S+ C ++ ++N+I +I K TV L + Sbjct: 155 SLDKNNKNYARDYCILTLFLNCGMRLSELCGISIEKIRNDILAII-GKGNKERTVYLNEA 213 Query: 241 FMKLL----------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAH 287 +K + P K+ F+++ + +N I K AG+ + H Sbjct: 214 CLKSIENYMRIRDDSKALPEYKKFLFLSSHNKPINQRTVEIMIKKHVKNAGLTDAKYTPH 273 Query: 288 GVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGAD 327 +R +AT+ G L G + + + YT + Sbjct: 274 KLRHTAATLMYKYGDVDIRSLQNILGHENISTTQIYTHVDN 314 >gi|16420406|gb|AAL20787.1| putative phage integrase protein [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|301158393|emb|CBW17900.1| Integrase [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|323130155|gb|ADX17585.1| putative phage integrase protein [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] Length = 298 Score = 105 bits (263), Expect = 7e-21, Method: Composition-based stats. Identities = 49/287 (17%), Positives = 97/287 (33%), Gaps = 34/287 (11%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--- 126 T+ I Y +L+VN+ + + K G+ ++TT+HI +ES Sbjct: 14 TVSAWIDRYEVLLQRRNLSVNTYKIRSNQLATVREKMGEIILAEVTTRHIAKFLESWITE 73 Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 K+T + A++ + + +F+ A+ + ++ NP + P+ K R ++ + + Sbjct: 74 GKNTMAGAMR--SVLSDMFREAIVEGHIVKNPVEATRIPEIKVARERL----QLETYNAT 127 Query: 186 WSEGSQPRLAF----EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241 + F + L +G R D + +N + KTG I + L Sbjct: 128 RAAAEHMPAWFPLAMDLALVTGQRREDIVNMKFSDVFDNRLYVTQIKTGMKIAIPLSLTL 187 Query: 242 MK--------LLAMTPIGKETFFI------NNDKQKMNATQFSIWFKAKATKAGVNKS-- 285 + + + F I N+ ++ + F +GVN S Sbjct: 188 RATGLRLGTVIDRCRLVSRTDFMISAGIRKNSPTGNIHPDGLTKTFVKARKASGVNFSNN 247 Query: 286 ---AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 H +R A G + + + Y D Sbjct: 248 PPTFHEIR-SLAGRLYKNEHGEVFAQKLLGHTSENTTKLYLDERDNK 293 >gi|150017168|ref|YP_001309422.1| phage integrase family protein [Clostridium beijerinckii NCIMB 8052] gi|149903633|gb|ABR34466.1| phage integrase family protein [Clostridium beijerinckii NCIMB 8052] Length = 389 Score = 105 bits (263), Expect = 7e-21, Method: Composition-based stats. Identities = 44/308 (14%), Positives = 101/308 (32%), Gaps = 54/308 (17%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF-----DYRKITTKHIRSGVESRK 127 WL R S + + +E + ++ S + + + + + +G+ Sbjct: 73 WLFETIRVSDR---IKPTTFEKYEGLYRNYVKDSPLYSIKLSELKALQVQRYYNGLSDIG 129 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS----VERPKRKTEGIRPWTKEDMQQFK 183 + + ++ F +AV + Y++ NPCL + K+ + ++ ++ E+++ Sbjct: 130 KSRNLIENLNKLLKQFFNYAVDEGYLSKNPCLGKKIVIPGEKKPRKEVQHFSDEEIEILV 189 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-------------- 229 S + L L +GLR + + + +K K+ Sbjct: 190 SNLKDNRYRELIL-LSLGTGLRRGELLALTWEDIDLKNKIVKVNKSLAKVYIIAGDGSKE 248 Query: 230 -----------GTIITVELPDGFMKL---LAMTPIGK-----------ETFFINNDKQKM 264 G+I V PD + + + + F + + Sbjct: 249 RKQIIQVPKTRGSIREVSFPDNLTSIFKDIRIKQRRDRLKCGESYEVSDHVFTTSSGSLI 308 Query: 265 NATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TY 322 + T S ++ K + +K H +R AT + + G ++D TY Sbjct: 309 DVTNLSHAWEHLLKKCKLPHKKFHALRHTFATKLFENEVALKTVSELLGHSSIDMTANTY 368 Query: 323 TKGADRIR 330 T + + Sbjct: 369 THVIPKQK 376 >gi|116671017|ref|YP_831950.1| tyrosine recombinase XerC subunit [Arthrobacter sp. FB24] gi|116611126|gb|ABK03850.1| tyrosine recombinase XerC subunit [Arthrobacter sp. FB24] Length = 308 Score = 105 bits (263), Expect = 7e-21, Method: Composition-based stats. Identities = 43/280 (15%), Positives = 96/280 (34%), Gaps = 28/280 (10%) Query: 85 GSLAVNSRISFESY---FDQIIRKSGDFDYRKITTKHIRSGVESRKH---TPSSAIQFLT 138 + + ++ ++ S + G D I +R + ++ + S+ + Sbjct: 25 RARSPHTVRAYLSDVHSLLTVAAADGATDLDGIELATLRRWLGAQSEARMSRSTLARRAA 84 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM--------QQFKSFWSEGS 190 + R WAVR+E + +P L ++ PKR+ ++ + + Sbjct: 85 TARSFTSWAVREELLGSDPALRLKAPKRERSLPGVLHQQQVLRVVDHLKAAAEDGGPLAL 144 Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT---------IITVELPDGF 241 + R E L +G+R + V L + +++ G V + D Sbjct: 145 RDRAMVELLYATGVRVGELAGMDVDDLDPDRRTLRVVGKGNKERTVPYGLPAAVAVDDWL 204 Query: 242 MKLLAMTPIGK--ETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATIS 297 + + + F+ ++++ Q K G + H +R +AT Sbjct: 205 RRGRPVLAVDGSGPALFLGARGRRVDQRQVRTVVKDVLDALGDTAATGPHALRHSAATHL 264 Query: 298 ADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNS 336 D GA + G ++ + YT +R+R + + Sbjct: 265 LDGGADLRAVQEILGHSSLATTQIYTHVSVERLRQSYQQA 304 >gi|320352375|ref|YP_004193714.1| integrase family protein [Desulfobulbus propionicus DSM 2032] gi|320120877|gb|ADW16423.1| integrase family protein [Desulfobulbus propionicus DSM 2032] Length = 344 Score = 105 bits (263), Expect = 7e-21, Method: Composition-based stats. Identities = 60/334 (17%), Positives = 126/334 (37%), Gaps = 32/334 (9%) Query: 9 PFVTKERTRHGKIIYYFRKGHG-RRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKK 67 P TK ++ GK + G G +R R+ + Y ++ ++P+ Sbjct: 5 PHPTKSKSEPGK-WWVIDIGRGNQRERITFNGSYEEAWRYERSIRQQPDHLVEGSAPK-- 61 Query: 68 PTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTK---HIRSGV 123 +K +++ + + + ++N+ D II G+F +++T ++ + Sbjct: 62 ---IKDVVTLFLEWYRTEN-SINTVNDMRFCLDNHIIPWFGNFQPKQLTIALFNKFKADL 117 Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINP-CLSVERP---KRKTEGIRPWTKEDM 179 R P + + ++ + L KWA Y P ++ R K E ++P T+ + Sbjct: 118 LERGLAPVTINKNMSYLSSLLKWASEHGYCQ--PLAFTIPRFSKKKTTAEPVQPLTRRQL 175 Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI------I 233 + RL F + GLR ++ V+ + +I+ G+ + Sbjct: 176 DALYECLDP--EYRLLFLLMADHGLRKEEALNLQVEDIDEARKTIRVYGKGSKYRIVPFL 233 Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRK 291 +V + K+L+ G F + N A KAG+++ H +R Sbjct: 234 SVRFEEELNKVLSERLEG---FLVVNPATGKPYYSIRKVLTRAAKKAGLSRQVYHHLLRH 290 Query: 292 FSATISADAGATAHELMATYGWKTVDQA-ETYTK 324 +++A+AG + L G ++ + YT Sbjct: 291 TFGSLAAEAGMNPYALQRIMGHSNIETTNKIYTH 324 >gi|254454192|ref|ZP_05067629.1| tyrosine recombinase XerC [Octadecabacter antarcticus 238] gi|198268598|gb|EDY92868.1| tyrosine recombinase XerC [Octadecabacter antarcticus 238] Length = 301 Score = 105 bits (263), Expect = 7e-21, Method: Composition-based stats. Identities = 41/283 (14%), Positives = 90/283 (31%), Gaps = 24/283 (8%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF----DYRKITTKHIRSGVESRK 127 WL + + + + + + + G+ +IT +R+ + S + Sbjct: 7 DWLDHQRALNGAAANTITAYQTDLLGFLNFMTTYHGEAQGLGPISRITVSDMRAWMASER 66 Query: 128 HTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE------D 178 +A + L++++ ++W +E LS PK + + RP + D Sbjct: 67 GRGVAARSLARSLSAVKSFYRWLADREGFEPTAVLSTRSPKFQKKLPRPLAVDGARAMID 126 Query: 179 MQQFKSFWS-EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL 237 + ++ ++ L GLR S++ + K G V + Sbjct: 127 TVELQAREPWIAARDVAVVTLLYGCGLRISEALGLTPTDVPLPATLRIIGKGGKERLVPV 186 Query: 238 PDGFMKLLAM-------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HG 288 + + F + + + + G+ +A H Sbjct: 187 IPAARAAVNAYLDACPHQLTADQPIFRGSRGGPLYPKAIQNVMASSRMQLGLPATATPHA 246 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 +R AT +AG + G ++ ++YT D RL Sbjct: 247 MRHSFATHLLNAGGDLRSIQELLGHASLSTTQSYT-AVDTARL 288 >gi|297172260|gb|ADI23238.1| integrase [uncultured nuHF2 cluster bacterium HF0770_13K08] Length = 342 Score = 105 bits (263), Expect = 7e-21, Method: Composition-based stats. Identities = 52/287 (18%), Positives = 106/287 (36%), Gaps = 27/287 (9%) Query: 74 LISEYRKSAHW-------GSLAVNSRISFESYFDQII-RKSGDFDYRKITTKHIRSGVES 125 LI ++++A + G S + + + + G ++ I + Sbjct: 62 LIPSFKRNADFVAYFKKLGERKGQSSKVWRNVLNYLEVFTGGRVVFKNIDELWLEKWQRF 121 Query: 126 R--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 K + ++A+ + + AVR + NPC V+ KR+ T +++Q Sbjct: 122 LLEKVSRNTAVGYYALTKAALNQAVRDRIIQDNPCKHVQNIKRQDTERIFLTFAEIKQLS 181 Query: 184 SFWSEG---SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240 + + F F ++GL + + ++++ KT T V L + Sbjct: 182 ETLPKDENSQEVARMFLFGCFTGLSLGNLETLTYKQIESDTVKFFRSKTKTWHHVPLNET 241 Query: 241 FMKLL----AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHG--VRKFSA 294 + L+ P G+ N ++ + T W K +AG+ K H R A Sbjct: 242 ALSLIGDTFDCDPNGR---IFNTPSRRYSQTLVGKWGK----QAGIKKHVHMHVSRHTFA 294 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGAD-RIRLGIKNSRRIS 340 T++ +GA + + G K +D + Y K D + R + ++ Sbjct: 295 TLNLSSGADIYTVSKLIGHKKLDTTQIYAKVIDEKKRQAVDALPQLE 341 >gi|254452216|ref|ZP_05065653.1| integrase [Octadecabacter antarcticus 238] gi|198266622|gb|EDY90892.1| integrase [Octadecabacter antarcticus 238] Length = 389 Score = 105 bits (263), Expect = 7e-21, Method: Composition-based stats. Identities = 53/331 (16%), Positives = 110/331 (33%), Gaps = 22/331 (6%) Query: 11 VTKERTRHGKIIYYFRKGHGRRIRL---PYPHESTFIPAYMSALT----GSTPKREYINS 63 V GK Y +++ GR RL +P + ++A + Sbjct: 36 VLAVTPAGGKSFYLYKRIDGRPERLLLGKFPDLTVENARKLAASAKGEIAMGENPQKAKR 95 Query: 64 PRKKPTTLKWLISEYR-KSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG 122 + T L +EY K + + E ++ ++ I + Sbjct: 96 SIRDEMTFGALFTEYLEKHSKVHKRSWAYD---EREVNKFLKHWFKRKISSIEKPEVERL 152 Query: 123 VES--RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 +++ A + L +R +F A + +NP +++ + K+ R E++ Sbjct: 153 HAKVGKENGLYQANRLLERIRSIFSKATDWGWNGVNPATGIKKYREKSR-DRFLQPEELP 211 Query: 181 QFKSFWS--EGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVE 236 +F S R F L +G R S++ + + I K V Sbjct: 212 RFFEALSNEPNEVARDFFMISLLAGARKSNTLAMRWDEISFHGETWRIARTKNDDPQIVH 271 Query: 237 LPDGFMKLLAMTPIGKET--FFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFS 293 L M++L + + F + A W + +AG+ + H +R+ Sbjct: 272 LSPQAMEILKERKLHSLSPWVFPGDGASGHLADPKKAWMR-ILKEAGIADLRIHDLRRTL 330 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTK 324 + A GA ++ + + G ++ Y + Sbjct: 331 GSWQAATGANSYIIGKSLGHRSQQSTAVYAR 361 >gi|310828727|ref|YP_003961084.1| phage integrase family site specific recombinase [Eubacterium limosum KIST612] gi|308740461|gb|ADO38121.1| phage integrase family site specific recombinase [Eubacterium limosum KIST612] Length = 386 Score = 105 bits (263), Expect = 7e-21, Method: Composition-based stats. Identities = 51/361 (14%), Positives = 108/361 (29%), Gaps = 53/361 (14%) Query: 12 TKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71 K++ ++G Y++R H R + T + + + + + + Sbjct: 6 YKKKVKNGNTYYFYRLNHKNLKRPRDLYGKTVQELVEKIDSLTYQLDRNVTTTKVR---F 62 Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK-----SGDFDYRKITTKHIRSGVESR 126 + + H + + + S FD I+ D + + + + + Sbjct: 63 GDYMKNWLDKVHGINKKAGTIQGYSSLFDNYIKDSSLYNIQLTDLTALDVQDYLNSLLRK 122 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE--RPKRKTEGIR--PWTKEDMQQF 182 + + + ++A Q+ + ++ S++ +P +G P TKE+ ++F Sbjct: 123 GKSFNVVSSVKKLIGPCIRYAYTQQKILVDFSRSIKIQKPSEIDDGTNVNPMTKEEQEEF 182 Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT------------- 229 + L F L +G R + + F IK KT Sbjct: 183 IKAIEGATYEPL-FLMALNTGARVGELLALTWDDVDFINFEIKITKTLEYQKDKETKKYI 241 Query: 230 ----------GTIITVELPDGFMKLLAMTPI--------------GKETFFINNDKQKMN 265 G TV P+ L + F N +N Sbjct: 242 HIINSPKTKAGNR-TVPFPEFMAPYLKNLRAKELEKKMRLQNKYADRNLVFANRLGDFLN 300 Query: 266 ATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYT 323 + + + ++G+ H +R AT + G + + G V YT Sbjct: 301 NSSVRVSMDSILKESGLPHFRFHDLRHTFATRLFELGESPRTIQTILGHTDVATTLNIYT 360 Query: 324 K 324 Sbjct: 361 H 361 >gi|291286542|ref|YP_003503358.1| integrase family protein [Denitrovibrio acetiphilus DSM 12809] gi|290883702|gb|ADD67402.1| integrase family protein [Denitrovibrio acetiphilus DSM 12809] Length = 399 Score = 105 bits (263), Expect = 7e-21, Method: Composition-based stats. Identities = 45/291 (15%), Positives = 104/291 (35%), Gaps = 27/291 (9%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130 + S S+A ++ ++ + ++ F +I HI+ + + + + Sbjct: 89 FDTYAELWLSSIE-SSVAYSTYKTYSTAVSKLSSYFSRFKLSEIKPSHIQQYISNSELSA 147 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS-FWSEG 189 + +L +F+ AVR + ++ NPC V++P+ +TE + P++ E++ Sbjct: 148 KTIANYLGVFHSIFESAVRDDLLSKNPCKHVKKPRVQTEKVDPFSIEEVSMILDWMRQHH 207 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ---NNIFSIKT---------QKTGTIITVEL 237 + F Y+G+R ++ + + I +T KT +++ Sbjct: 208 PHMTIIFALGFYTGMRVGEAIALKWSDIDFKHHKIIVQRTITKNRIKESTKTADYRVIDI 267 Query: 238 PDGFMKLLAM----TPIGKETFFINNDKQKMNATQ--FSIWFKAKATKAGVNKSAHGV-- 289 + L T + E + + + TQ +FK G+ + Sbjct: 268 IPMLDEYLHFQKQYTFMKSEWVTVTSYGEPFTKTQNITEDYFKPCLKALGLRYRI--LNQ 325 Query: 290 -RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339 R A + DA + + G ++ + K +RI + + Sbjct: 326 MRHSFACMMLDAREEINWIKNMLGHSSLQM--LFRKYGNRINRNDGTRKGL 374 >gi|332036156|gb|EGI72631.1| tyrosine recombinase XerC [Pseudoalteromonas haloplanktis ANT/505] Length = 314 Score = 105 bits (263), Expect = 7e-21, Method: Composition-based stats. Identities = 40/268 (14%), Positives = 94/268 (35%), Gaps = 30/268 (11%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134 +++Y + +L YF ++ F + + + S++ + + Sbjct: 37 VNQYVSQLGFAAL----------YFSKLCDDW--FGVQGEHIRRYSMALRSKQLSGRTIS 84 Query: 135 QFLTSMRVLFKWAVRQEYVA----INPCLSVERPKRKTEGIRPWTKEDMQQFKSF---WS 187 L+ +R L+K+ + NP + ++ PK + + M + Sbjct: 85 LKLSCIRSLYKFLKAKNIAEQSHYHNPAIGIKGPKFAKPLPKNLDVDQMARLLEIPDDEP 144 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVEL----PDGFM 242 + + E + SGLR S+ A +Q + I + G + + D Sbjct: 145 LAIRDKAMMELMYSSGLRISELVGANMQDISAANGEILVRGKGNKERLIPVGTKALDALK 204 Query: 243 KLLAMTP----IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATI 296 K L + P + F+++ K +++ Q + + K G++ H +R A+ Sbjct: 205 KWLTIRPQFAKPDEIAVFLSSQKNRISIRQVRLRMQEWGIKQGISSQVHPHKLRHSFASH 264 Query: 297 SADAGATAHELMATYGWKTVDQAETYTK 324 ++ + G ++ + YT Sbjct: 265 ILESSGDLRAVQELLGHSSLSATQVYTH 292 >gi|306822461|ref|ZP_07455839.1| tyrosine recombinase XerD [Bifidobacterium dentium ATCC 27679] gi|309801460|ref|ZP_07695587.1| tyrosine recombinase XerD [Bifidobacterium dentium JCVIHMP022] gi|304554006|gb|EFM41915.1| tyrosine recombinase XerD [Bifidobacterium dentium ATCC 27679] gi|308221975|gb|EFO78260.1| tyrosine recombinase XerD [Bifidobacterium dentium JCVIHMP022] Length = 318 Score = 105 bits (263), Expect = 7e-21, Method: Composition-based stats. Identities = 39/294 (13%), Positives = 96/294 (32%), Gaps = 43/294 (14%) Query: 74 LISEYRKSAH-WGSLAVNSRISFESYFDQ---IIRKSGDFDYRKITTKHIR---SGVESR 126 L+ ++ L+ + ++ S + + + G D +TT+H+ + ++ Sbjct: 7 LVRQFLAHIDVERGLSKATVCAYGSDLHKYVSWLHEQGIHDLDDVTTRHVEEYVASLDDS 66 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF---- 182 + S + L S+ ++A+ + V + V+ PK + + +++ + Sbjct: 67 GESARSKARRLASIHAFHRFALSEHVVHDDVASQVKAPKGASTLPDVLSVDEVMRLMDSI 126 Query: 183 ---------------KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ 227 + + + EF+ +G R S++C + + + + Sbjct: 127 PLSRHHDGKQGHGDAAADDPVMLRDKALLEFMYATGSRVSEACGVDLDDIDLDDKVARLM 186 Query: 228 KTGTIIT-VELPDGFMKLLAM--------------TPIGKETFFINNDKQKMNATQFSIW 272 G+ V + + L F+N ++++ Sbjct: 187 GKGSKQRLVPVGSFACEALRRYLRFGRPALQSKSKGAAEHRAVFLNKRGKRLSRQSVWEI 246 Query: 273 FKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 + +A + K H +R AT GA + G +V + YT Sbjct: 247 IRTAGERAHITKPLHPHTLRHSFATHLIQGGADVRTVQELLGHASVTTTQIYTH 300 >gi|218442243|ref|YP_002380571.1| integrase [Cyanothece sp. PCC 7424] gi|218175384|gb|ACK74114.1| integrase family protein [Cyanothece sp. PCC 7424] Length = 289 Score = 105 bits (263), Expect = 7e-21, Method: Composition-based stats. Identities = 54/249 (21%), Positives = 99/249 (39%), Gaps = 13/249 (5%) Query: 88 AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSSAIQFLTSMRVLFKW 146 + ++ S+ + + + +T ++ S H PSS + +++ L + Sbjct: 31 SPHTVDSYRRSARRFLDFV-NKPLHLVTLADLQLWRASLTHLAPSSQGTAMAAIKSLLSF 89 Query: 147 AVRQEYVAINPCLSVERPKRKTEGI-RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLR 205 + + N ++++ PK K R +E++ + + + R+ L GLR Sbjct: 90 GHQIGVLPTNVGIALKSPKVKDTLNERILNEEEVMTMIANEPD-ERNRVLLRLLYAGGLR 148 Query: 206 CSDSCRAGVQHL--QNNIFSIKT-QKTGTIITVELPDGF---MKLLAMTPIGKETFFINN 259 S+ C + L +N + K G TV LP G + + G + F + Sbjct: 149 VSELCALKWKDLKSRNQSGQVTVFGKGGKTRTVLLPSGVWQELCQIRGKSRGADPVFPSR 208 Query: 260 -DKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTV 316 ++ TQ KA A++AG+ S H +R A+ S D GA H + AT G +V Sbjct: 209 MGGGHLDRTQVYRIVKAAASRAGIEGNVSPHWLRHAHASHSLDRGAPLHLVQATLGHSSV 268 Query: 317 DQAETYTKG 325 E Y Sbjct: 269 ATTERYLHA 277 >gi|171742548|ref|ZP_02918355.1| hypothetical protein BIFDEN_01661 [Bifidobacterium dentium ATCC 27678] gi|283456366|ref|YP_003360930.1| Integrase/recombinase (XerD/RipX family) [Bifidobacterium dentium Bd1] gi|171278162|gb|EDT45823.1| hypothetical protein BIFDEN_01661 [Bifidobacterium dentium ATCC 27678] gi|283103000|gb|ADB10106.1| Integrase/recombinase (XerD/RipX family) [Bifidobacterium dentium Bd1] Length = 318 Score = 105 bits (263), Expect = 7e-21, Method: Composition-based stats. Identities = 39/294 (13%), Positives = 96/294 (32%), Gaps = 43/294 (14%) Query: 74 LISEYRKSAH-WGSLAVNSRISFESYFDQ---IIRKSGDFDYRKITTKHIR---SGVESR 126 L+ ++ L+ + ++ S + + + G D +TT+H+ + ++ Sbjct: 7 LVRQFLAHIDVERGLSKATVCAYGSDLHKYVSWLHEQGIHDLDDVTTRHVEEYVASLDDS 66 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF---- 182 + S + L S+ ++A+ + V + V+ PK + + +++ + Sbjct: 67 GESARSKARRLASIHAFHRFALSEHVVHDDVAAQVKAPKGASTLPDVLSVDEVMRLMDSI 126 Query: 183 ---------------KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ 227 + + + EF+ +G R S++C + + + + Sbjct: 127 PLSRHHDGKQGHGDAAADDPVMLRDKALLEFMYATGSRVSEACGVDLDDIDLDDKVARLM 186 Query: 228 KTGTIIT-VELPDGFMKLLAM--------------TPIGKETFFINNDKQKMNATQFSIW 272 G+ V + + L F+N ++++ Sbjct: 187 GKGSKQRLVPVGSFACEALRRYLRFGRPVLQSKSKGAAEHRAVFLNKRGKRLSRQSVWEI 246 Query: 273 FKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 + +A + K H +R AT GA + G +V + YT Sbjct: 247 IRTAGERAHITKPLHPHTLRHSFATHLIQGGADVRTVQELLGHASVTTTQIYTH 300 >gi|291535839|emb|CBL08951.1| Site-specific recombinase XerD [Roseburia intestinalis M50/1] Length = 312 Score = 105 bits (263), Expect = 8e-21, Method: Composition-based stats. Identities = 39/276 (14%), Positives = 94/276 (34%), Gaps = 28/276 (10%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133 I++Y + L + ++++ +Q I G+ + K + + + Sbjct: 7 INKYLNYCKFQKELKDKTIKAYKADLEQFITVIGENNPDKEVLNAYLVYLHRM-YKQKTV 65 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVE-RPKRKTEGIRPWTKEDMQQFKSFW------ 186 + + S++ LF + +E + INP V+ + + + + ++ ++Q + Sbjct: 66 KRKIASVKALFHYLEEEELIEINPFHKVKTKFREEVILPKIIPRDIIEQLLNHLYKERSI 125 Query: 187 --------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVEL 237 + E L +GLR S+ C +++ + K G +++ Sbjct: 126 KEYSEWRKKIILRDIAVVETLFSTGLRISELCHLQNKYVDLKNGVLCIQGKGGKERYLQI 185 Query: 238 --------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKA--TKAGVNKSAH 287 + + K + FF+N ++ A +A +N + H Sbjct: 186 GNNDVLSILNAYKKSFEDEIKKQGYFFVNRYGNALSEQSARSMIHKYAGEIQADINITPH 245 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 R AT + + G ++ + YT Sbjct: 246 MFRHSFATYLMEEDVNIRYIQKMLGHASITTTQIYT 281 >gi|254498340|ref|ZP_05111078.1| prophage dlp12 integrase [Legionella drancourtii LLAP12] gi|254352434|gb|EET11231.1| prophage dlp12 integrase [Legionella drancourtii LLAP12] Length = 331 Score = 105 bits (263), Expect = 8e-21, Method: Composition-based stats. Identities = 51/310 (16%), Positives = 100/310 (32%), Gaps = 14/310 (4%) Query: 22 IYYFRKGH-GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRK 80 I++ H G+R+R E Y A E T + + + Sbjct: 9 IWWVDIFHQGKRVRKSTGTEVKQDAEYFHAQLKHELWTEKQIKSIPNK-TWMDAVRRWLE 67 Query: 81 SAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSM 140 + ++ + ++ DQ R D + + I E +P++ + L + Sbjct: 68 ESA-HKRSLETDKIHLAWLDQHFRTKKLTDIDRDLIESIAKKKEQSNVSPTTVNRVLELV 126 Query: 141 RVLFKWA-VRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFL 199 R + A ++ P + K + IR T+ + Q + +F + Sbjct: 127 RAILNRAQKEWGWLETLPV--IRMRKVENRRIRWLTQNEASQLLKELPSHLKDMASFTLV 184 Query: 200 LYSGLRCSDSCRAGVQHLQNN----IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF 255 +GLR S+ + + + K+ I V L + +L T+ Sbjct: 185 --TGLRESNVTQLKWSEIHLEKKHALIHADESKSKRPIPVPLSQQAIAILKDQIGKNPTY 242 Query: 256 FINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWK 314 Q + + ++ +AG+ + H +R A+ G HEL GW Sbjct: 243 VFTYQGQPVTRCN-NHAWRKALERAGISDFRWHDLRHTWASWHVQNGTPLHELQQLGGWS 301 Query: 315 TVDQAETYTK 324 T + Y Sbjct: 302 TYEMVLRYAH 311 >gi|85706394|ref|ZP_01037488.1| tyrosine recombinase XerC [Roseovarius sp. 217] gi|85669167|gb|EAQ24034.1| tyrosine recombinase XerC [Roseovarius sp. 217] Length = 306 Score = 105 bits (263), Expect = 8e-21, Method: Composition-based stats. Identities = 47/298 (15%), Positives = 94/298 (31%), Gaps = 24/298 (8%) Query: 63 SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF----DYRKITTKH 118 SP + WL ++ + + + + G+ +ITT Sbjct: 3 SPAARDALSAWLAAQKALKGAAANTIDAYARDVGDFLRFMTQHHGETQGLGALSRITTSD 62 Query: 119 IRSGVESRKHT---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175 +R+ + + P S + L++++ ++W +E LS PK + + RP + Sbjct: 63 MRAWMAHTRGGDVGPRSLARKLSAVKSFYRWLSEREGFEPTAVLSTRSPKFQRKLPRPLS 122 Query: 176 KEDMQQFKSFWS-------EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228 E + ++ + L GLR S++ L K Sbjct: 123 PEAASEMIDTLEVQSLTPWIAARDQAVVTLLYGCGLRISEALGLTGADLPIGTVLRILGK 182 Query: 229 TGTIITVELPDGFMKLLAMTPI-------GKETFFINNDKQKMNATQFSIWFKAKATKAG 281 G V + + + F+ ++ + + G Sbjct: 183 GGKERLVPVIEPARAAVTQYARLCPYDIPRNGPLFLGARGGALSPRLIQKVMEQTRAQLG 242 Query: 282 VNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 + +A H +R AT +AG + G ++ + YT G D RL +R Sbjct: 243 LPATATPHAMRHSFATHLLNAGGDLRAIQELLGHASLSTTQAYT-GVDTARLMEVYAR 299 >gi|327440195|dbj|BAK16560.1| integrase [Solibacillus silvestris StLB046] Length = 313 Score = 105 bits (263), Expect = 8e-21, Method: Composition-based stats. Identities = 47/281 (16%), Positives = 88/281 (31%), Gaps = 40/281 (14%) Query: 88 AVNSRISFE-------SYFDQIIRKSGDFDYRKITT-------------KHIRSGVE--- 124 + +R +E + I I + + +E Sbjct: 21 SQRTRKEYEYDLILFMRFLKAIEEDIPLDRLHTIDISTITIDQIKEVSLEDLYLFMEYCE 80 Query: 125 -SRKHTPSSAIQFLTSMRVLFKWAV-RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 R ++ S+ + + +++ FK+ ++ + NP +E PK + + F Sbjct: 81 VQRGNSSSARARKVATLKSFFKYLKGKRRLIDENPAEHLETPKIGRRQPVYLNYNEAKDF 140 Query: 183 KSF---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD 239 S ++ F L G+R S+ C + + + ++ K V L D Sbjct: 141 IGAVQTQSYSARDECMMVFFLNLGIRVSELCSLNIDSINGRMLTVI-GKGNKERHVYLND 199 Query: 240 GFMKLLAM--------TPIGKETFFINNDKQKMNATQFSIWFKAK---ATKAGVNKSAHG 288 M L GKE FI+ + + K + + H Sbjct: 200 ACMNALDKYLQERHAYKGDGKEPLFISQKGTRFARQSIARIVKVINANSHSPKEKLTPHK 259 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 +R SAT+ +GA L G +V + YT D Sbjct: 260 LRHTSATMMYKSGADIRTLQHILGHSSVATTQIYTHIEDEQ 300 >gi|257453686|ref|ZP_05618973.1| tyrosine recombinase XerC [Enhydrobacter aerosaccus SK60] gi|257448920|gb|EEV23876.1| tyrosine recombinase XerC [Enhydrobacter aerosaccus SK60] Length = 345 Score = 105 bits (263), Expect = 8e-21, Method: Composition-based stats. Identities = 44/280 (15%), Positives = 95/280 (33%), Gaps = 28/280 (10%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK--SGDFDYRKITTKHIRSGVESR--- 126 + L++ + + + S+ + + IT + + + R Sbjct: 48 QALVNRWLAELSNKRYSAATIKSYRQALQPFLAYCYEQHTELCHITRQQLSDFLIRRLDV 107 Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM------ 179 K + SS+ LT +R L+KW + Q+ + +NP ++ R KR + D+ Sbjct: 108 DKISKSSSQYELTVLRQLYKWLIVQQLMTLNPTTTI-RLKRAPRPLPTLLDIDVLSQLLD 166 Query: 180 -QQFKSFWSEGS--QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITV 235 + + + E L SGLR + + + + ++ K G V Sbjct: 167 QAAPEDSHEARLWIRDKAMLELLYGSGLRVGELVGLNMSDIDKSQRLLRVLGKGGKTRIV 226 Query: 236 ELPD-GFMKLLAMTPI-------GKETFFINND-KQKMNATQFSIWFKAKATKAGVNKS- 285 + + + L+ P F++ +++ + K +A +AGV + Sbjct: 227 PIGEKAWQALINYLPHRSLWVEEQDPAVFVSERYGTRISTRTVQLRIKLQAKRAGVAQDL 286 Query: 286 -AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R A+ + G + + YT Sbjct: 287 YPHLLRHCFASHILSDSGDLRGVQELLGHSDISTTQIYTH 326 >gi|257413888|ref|ZP_04744580.2| putative tyrosine recombinase XerD [Roseburia intestinalis L1-82] gi|257201913|gb|EEV00198.1| putative tyrosine recombinase XerD [Roseburia intestinalis L1-82] Length = 334 Score = 105 bits (263), Expect = 8e-21, Method: Composition-based stats. Identities = 39/276 (14%), Positives = 94/276 (34%), Gaps = 28/276 (10%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133 I++Y + L + ++++ +Q I G+ + K + + + Sbjct: 29 INKYLNYCKFQKELKDKTIKAYKADLEQFITVIGENNPDKEVLNAYLVYLHRM-YKQKTV 87 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVE-RPKRKTEGIRPWTKEDMQQFKSFW------ 186 + + S++ LF + +E + INP V+ + + + + ++ ++Q + Sbjct: 88 KRKIASVKALFHYLEEEELIEINPFHKVKTKFREEVILPKIIPRDIIEQLLNHLYKERSI 147 Query: 187 --------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVEL 237 + E L +GLR S+ C +++ + K G +++ Sbjct: 148 KEYSEWRKKIILRDIAVVETLFSTGLRISELCHLQNKYVDLKNGVLCIQGKGGKERYLQI 207 Query: 238 --------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKA--TKAGVNKSAH 287 + + K + FF+N ++ A +A +N + H Sbjct: 208 GNNDVLSILNAYKKSFEDEIKKQGYFFVNRYGNALSEQSARSMIHKYAGEIQADINITPH 267 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 R AT + + G ++ + YT Sbjct: 268 MFRHSFATYLMEEDVNIRYIQKMLGHASITTTQIYT 303 >gi|163859107|ref|YP_001633405.1| site-specific tyrosine recombinase XerC [Bordetella petrii DSM 12804] gi|163262835|emb|CAP45138.1| putative integrase/recombinase [Bordetella petrii] Length = 326 Score = 105 bits (263), Expect = 8e-21, Method: Composition-based stats. Identities = 45/304 (14%), Positives = 94/304 (30%), Gaps = 42/304 (13%) Query: 60 YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI--IRKSGDFDYRKITTK 117 P P L + R + + ++ ++ Q+ + ++ ++ Sbjct: 5 EPAPPDTLPQPLDAWLQHLRAHRRY---SPHTLDAYRRDLRQLAVLAQAAGLPLEQLANG 61 Query: 118 HIR---SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174 HIR + + ++ P S + L + R ++W +A NP V PK + Sbjct: 62 HIRQFVARLHAQGLGPRSLARTLAAWRGFYQWWAPGAGLAGNPVAGVRAPKAARGLPKAL 121 Query: 175 TKEDMQQFKSFW-------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--------- 218 + E Q G + R FE L SGLR S+ +++ + Sbjct: 122 SVEQAQALLDHATSRLATDPAGLRDRAMFELLYSSGLRLSELVGLDIRYERSADYESRSW 181 Query: 219 ---NNIFSIKTQKTGTIITVEL----PDGFMKLLAMTP---------IGKETFFINNDKQ 262 ++ + K G V + + + P F+ + Sbjct: 182 LNLDDAEVVVLGKGGKRRAVPVGQAALTALRRWIDARPQLAAAAASAGDAAALFVGARGR 241 Query: 263 KMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320 ++ + A AG+ H +R A+ + + G + + Sbjct: 242 RIAPRVVQLQLARLAQAAGLPAHVHPHVLRHSFASHVLQSAQDLRAVQEMLGHANISTTQ 301 Query: 321 TYTK 324 YT+ Sbjct: 302 IYTR 305 >gi|152991432|ref|YP_001357154.1| phage integrase family site specific recombinase [Nitratiruptor sp. SB155-2] gi|151423293|dbj|BAF70797.1| site-specific recombinase, phage integrase family [Nitratiruptor sp. SB155-2] Length = 365 Score = 105 bits (263), Expect = 8e-21, Method: Composition-based stats. Identities = 41/296 (13%), Positives = 93/296 (31%), Gaps = 21/296 (7%) Query: 57 KREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITT 116 + +K L Y K + +++ + Y + I G IT Sbjct: 67 EDPLRAKKLRKSKVLDEAFELYVKDRELHNKSLHDEKA--RYINHIQPTFGSTPIAAITP 124 Query: 117 KHIRSGVESR---KHTPSSAIQFLTSMRVLFKWAVRQE-YVAINPCLSVERPKRKTEGIR 172 + I+ + + ++ + + + + + + Y NP V+R K R Sbjct: 125 EAIQKLQKKKINEGYSYKTVNHIINLLSTIINVGIEKGLYQGSNPAKKVKRLKVDNARER 184 Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTG 230 + ++++ + L L +G R + + + +K K Sbjct: 185 FLSVDEVKLLLDTVKDNPTLYLFCNLSLSTGGRLETILAIQKKDIDLESGTIKLKDFKND 244 Query: 231 TIITVELPDGFMKLLA--MTPIGKETFFINNDKQKMNATQFSIWFKAKATKA---GV--- 282 + T + D LL + + + ++ + + + Q + K + G+ Sbjct: 245 STYTGFINDTLHSLLKDLLPQLKANDYILSKSSKPLTSRQIQVPLKPILDRLFNQGLQPN 304 Query: 283 ----NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIRLGI 333 H +R A+ A G + + K ++ Y K A D R + Sbjct: 305 DRKNRVVIHTLRHTFASHLAINGTPIYTIQRLMNHKDINMTLRYAKLAPDSGREAV 360 >gi|326571339|gb|EGE21356.1| tyrosine recombinase subunit XerC [Moraxella catarrhalis BC8] Length = 331 Score = 105 bits (263), Expect = 8e-21, Method: Composition-based stats. Identities = 46/297 (15%), Positives = 105/297 (35%), Gaps = 30/297 (10%) Query: 58 REYINSPRKKPTTLKW-LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDY----- 111 +S + P++ W +S + + + ++ ++++ Q +Y Sbjct: 9 APTHSSHQSDPSSPAWGYLSSWCDELRLQNYSKHTITTYQTALIQFFNFLESDNYLGGDP 68 Query: 112 ----RKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167 R+ T+ + +E K P SA L+++R+ +++ ++Q +A+NP + Sbjct: 69 LACRRQDLTRFFSTRLEEEKIKPISAKLSLSAIRIFYQFLIKQGVIAVNPTTGYKIKSAP 128 Query: 168 TEGIRPWTKEDMQQFKS-FWSEGS-------QPRLAFEFLLYSGLRCSDS--CRAGVQHL 217 + + ++Q E + + + FE + SGLR S+ G + Sbjct: 129 RKLPTVADELLIKQLLDQKTPEDTAKAYLWIRDKAMFELMYSSGLRLSELAGLNMGDVNF 188 Query: 218 QNNIFSI-------KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINND-KQKMNATQF 269 I + + G + L D + FI+ +++ Sbjct: 189 DTGIVRVLGKGNKTRQVPVGKKAMIALQDYLPHRNLWQKKNCKALFISERHGTRLSTRAI 248 Query: 270 SIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 + K AT AG+ + H +R A+ + + G + + + YT Sbjct: 249 QLRLKVCATMAGIELNMYPHLLRHCFASHVLSSSGDLRAIQEMLGHQNISTTQIYTH 305 >gi|301168983|emb|CBW28580.1| DLP12 prophage; predicted integrase [Haemophilus influenzae 10810] Length = 347 Score = 105 bits (263), Expect = 8e-21, Method: Composition-based stats. Identities = 44/252 (17%), Positives = 84/252 (33%), Gaps = 15/252 (5%) Query: 83 HWGSLAVNSRISFESY--FDQIIRKSGDFDYRKITT---KHIRSGVESRKHTPSSAIQFL 137 W + + + GD +I K I+S + L Sbjct: 70 QWLEEKPKRKQDRNMIYGLVWLDKYLGDKKLSEIDRNLIKFIQSEKAREGVKARTINAVL 129 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFE 197 +RV+ + AV E++ P ++ IR ++ + + E +P + F Sbjct: 130 QQIRVVLRAAVEWEWIDKCPA--IKFLPEPKRRIRWLSEYEEIRLMQELPEHLKPIVQFA 187 Query: 198 FLLYSGLRCSDSCRAGVQHLQ----NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKE 253 L +GLR S+ + + S + KTG I + L D ++++ + Sbjct: 188 IL--TGLRMSNITQLKWSQIDLPKKMAWISSEQSKTGNGIGIPLNDKAIEVIVAQFGKHK 245 Query: 254 TFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYG 312 + + + F+ +AG+ + H +R AT +G + L G Sbjct: 246 ENVFTYNGNAVKIAN-TRAFRESLKRAGIKDFRFHDLRHTWATRHIMSGTPLYVLQELGG 304 Query: 313 WKTVDQAETYTK 324 W D Y Sbjct: 305 WTKTDTVRKYAH 316 >gi|227529436|ref|ZP_03959485.1| phage integrase/recombinase [Lactobacillus vaginalis ATCC 49540] gi|227350646|gb|EEJ40937.1| phage integrase/recombinase [Lactobacillus vaginalis ATCC 49540] Length = 322 Score = 105 bits (263), Expect = 8e-21, Method: Composition-based stats. Identities = 40/262 (15%), Positives = 89/262 (33%), Gaps = 14/262 (5%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHT 129 I++Y + + + ++ + G +KITT+ +R + +SR + Sbjct: 47 YIADYLAAKQVEGCSEKTINYYQVTLKMMFSYLG-KHVQKITTEDLRDYLGNYQQSRNSS 105 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 + F W ++ + +P + + K + ++ ED+++ + + Sbjct: 106 RVTIDNIRRIFSSFFSWLEDEDVIIKSPVRRIHKVKSSAKVKDTYSDEDLERLRDHCNS- 164 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG-----FMKL 244 + + L +G+R + + + G + D Sbjct: 165 ERDVAMIDILASTGMRIGELVNLNQNDINFDERECVVLGKGNKQRIVYFDARSKIHLQNY 224 Query: 245 LAMTPIGKETFFIN--NDKQKMNATQFSIWFKAKATKAGVNKS-AHGVRKFSATISADAG 301 LA F++ Q+M+ K+ KAG+ K H R+ AT + D G Sbjct: 225 LAKRKDANSALFVSLHAPHQRMSINGIENRLKSLGKKAGIAKVYPHKFRRTLATNAIDKG 284 Query: 302 ATAHELMATYGWKTVDQAETYT 323 ++ G + +D Y Sbjct: 285 MPIEQVQKLLGHERIDTTLHYA 306 >gi|166031050|ref|ZP_02233879.1| hypothetical protein DORFOR_00731 [Dorea formicigenerans ATCC 27755] gi|166029317|gb|EDR48074.1| hypothetical protein DORFOR_00731 [Dorea formicigenerans ATCC 27755] Length = 329 Score = 105 bits (263), Expect = 8e-21, Method: Composition-based stats. Identities = 47/281 (16%), Positives = 100/281 (35%), Gaps = 19/281 (6%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134 + +Y S +V++ + +++ + IT I S + + K+ + Sbjct: 54 LEDYLMSKALEGKSVDTVNRYRYELTRLLSYI-NKAVADITDGDISSYLRAYKNIRAVKN 112 Query: 135 QFLTSMRVLFK----WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 L +R ++ W ++ V NP + VE K + RP+T + +Q + Sbjct: 113 STLKGVRAVYSSFFVWLRDRDRVRRNPMVLVESIKVEKRIKRPFTDAEREQLLRSCAT-I 171 Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQ---NNIFSIKTQKTGTIITVELPDG----FMK 243 + + EFL + +R S+ ++ ++ K G TV L + + Sbjct: 172 RDKAMMEFLYSTAVRVSELASLNRDDIRWSSKDLIVY--GKGGKERTVYLNERTNMYLQE 229 Query: 244 LLAMTPIGKETFF--INNDKQKMNATQFSIWFKAKATKAGVNKS-AHGVRKFSATISADA 300 L F + + +++ + +AGV K+ H R S T + + Sbjct: 230 YLQSRTDNNPALFVGLKSPHNRLSKAGIEDMIRRTGERAGVEKAHPHRFRGTSITNAINR 289 Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341 G E G + Y D+ + + + +S+ Sbjct: 290 GMPLQEASIMAGHAKTETTMLYC-SVDQESVKYHHKKYLSA 329 >gi|116623840|ref|YP_825996.1| phage integrase family protein [Candidatus Solibacter usitatus Ellin6076] gi|116227002|gb|ABJ85711.1| phage integrase family protein [Candidatus Solibacter usitatus Ellin6076] Length = 297 Score = 105 bits (263), Expect = 8e-21, Method: Composition-based stats. Identities = 45/279 (16%), Positives = 92/279 (32%), Gaps = 23/279 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG----VESRKHTPSSAIQFLTSM 140 + A ++ + K+ +H+R + + Q++ ++ Sbjct: 15 RNYAQSTVKGYLRIVQDFAEHF-HQQPDKLGPEHLRQYQAHLFRDKHLNAGTVQQYVAAL 73 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL 200 R F +++ Y+ + + PKR + + +++ S L Sbjct: 74 RFFFNKTLKRHYLLDD----IPMPKRHRKLPEILSPDEVALLIGSASNLLHQ-TMLMTLY 128 Query: 201 YSGLRCSDSCRAGVQHLQNNIF--SIKTQKTGTIITVELPDGFMKLLA---MTPIGKETF 255 +G+R ++ CR + + I+ K G V L ++ L K Sbjct: 129 STGVRRAELCRLKSADIDSQRMMVHIRQGKGGHDRDVPLSPRLLETLRVYWRWMKPKTYL 188 Query: 256 F---INNDKQ--KMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELM 308 F +NN + + + A +AG+ K S H +R A+ +AG + Sbjct: 189 FPGTVNNWRADVPITTKVPWEACRQAAQRAGITKHVSPHTLRHCFASHLLEAGTDLRTIQ 248 Query: 309 ATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347 G ++ Y R L + + VV S D Sbjct: 249 MLLGHAKLEHTAMYLH-LSRKHLTAVANPLDAIVVSSPD 286 >gi|197104212|ref|YP_002129589.1| probable integrase/recombinase DNA recombination protein [Phenylobacterium zucineum HLK1] gi|196477632|gb|ACG77160.1| probable integrase/recombinase DNA recombination protein [Phenylobacterium zucineum HLK1] Length = 305 Score = 105 bits (263), Expect = 8e-21, Method: Composition-based stats. Identities = 47/261 (18%), Positives = 92/261 (35%), Gaps = 31/261 (11%) Query: 110 DYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169 D + + + +R + ++A + ++R +++ + + + +P VE PK+ Sbjct: 50 DATAEDVEAYFADLGARGLSAATAARRRAAVRQFYRFVLGEGWRGDDPSRRVEAPKKGRS 109 Query: 170 GIRPWTKEDMQQFKSFW------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL-QNNIF 222 + ++E+M + + S + E SGLR S+ + L ++ + Sbjct: 110 LPKVLSREEMDRLIAAAGARDGASHALRLACMVELAYASGLRISELTGLTLAALARDPAY 169 Query: 223 SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINND------------KQKMNATQFS 270 I K G L + + + F D ++ +F+ Sbjct: 170 LIVKGKGGKERLAPLNEPARAAVKAYLEVRPAFLPKGDTANPWLFPSRGKGGRLTPRRFA 229 Query: 271 IWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 A AG++ S H +R AT + GA + G + + YT A Sbjct: 230 QLLDEAAADAGIDPGRVSPHVLRHAFATHLLEGGADLRVVQKLLGHADIATTQIYTHVA- 288 Query: 328 RIRLGIKNSRRISSVVDSDDP 348 S R+S VV S P Sbjct: 289 --------SDRLSEVVRSKHP 301 >gi|227833388|ref|YP_002835095.1| integrase/recombinase [Corynebacterium aurimucosum ATCC 700975] gi|227454404|gb|ACP33157.1| integrase/recombinase [Corynebacterium aurimucosum ATCC 700975] Length = 303 Score = 105 bits (263), Expect = 8e-21, Method: Composition-based stats. Identities = 45/292 (15%), Positives = 95/292 (32%), Gaps = 22/292 (7%) Query: 59 EYINSPRKKPTTLKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK 117 E +S R L+ I ++ + + + + S + + + + T Sbjct: 4 ESGSSERHVGGQLEEAIEDFAEYQRIVRGRSEATVRGYCSDLRLLAPEVPE--FAAFTLN 61 Query: 118 HIRSGVE---SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174 +R + + + S+ + ++R WA R+ Y+ + + PK Sbjct: 62 SLREWLAHAVAEGKSRSTLARRTAAVRAFSTWAAREGYLESDVAQRLATPKVGKHLPTVM 121 Query: 175 TKEDM-----QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQK 228 + + + EFL +G+R ++ V + + + + T K Sbjct: 122 SPTAAGELMGNAVSTDEVHFLRDSAMLEFLYATGVRVAELVGLDVGDIDLSRRTARVTGK 181 Query: 229 TGTIITVELPDGFMKLLAM--------TPIGKETFFINNDKQKMNATQFSIWFKAKATKA 280 V D L E F+ +++A Q + A Sbjct: 182 GNKQRVVPFGDAAHDALCAWLKTGRPELAGETEAVFVGTRGGRIDARQVRRVVERAAQVT 241 Query: 281 GVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIR 330 G + HG+R +AT + GA + G ++ + YT A R++ Sbjct: 242 GAPGLTPHGLRHSAATHLLEGGADLRIVQELLGHSSLQTTQVYTHVSAQRLK 293 >gi|119491191|ref|ZP_01623288.1| recombinase [Lyngbya sp. PCC 8106] gi|119453532|gb|EAW34693.1| recombinase [Lyngbya sp. PCC 8106] Length = 345 Score = 105 bits (263), Expect = 8e-21, Method: Composition-based stats. Identities = 45/291 (15%), Positives = 102/291 (35%), Gaps = 43/291 (14%) Query: 82 AHWGSLAVN-------SRISFESYFDQII-----RKSGDFDYRKITTKHIRSGV-ESRKH 128 A + L V + I+++ Q + R+ + K K R + + + Sbjct: 26 ADFLDLDVGAGDAATDTLITYKRQLIQFLDWCDQRQLHPAEINKNDIKKYRRWMIDKKGF 85 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT---KEDMQQFKSF 185 P++ L+ +R ++ A+ + + +NP V+ PK K + T +++Q + Sbjct: 86 KPATIALKLSVVRRFYQAAMEKGLLTVNPATGVKAPKEKHDPAEKITYLEASEVEQLFAT 145 Query: 186 WSEG-----SQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELP 238 + ++ + L G R + RA + + Q + I+ + I V L Sbjct: 146 IPDDGSLKSARDKALLAILTLEGPRTVELHRANICDIVRQGKNWGIRVEGKRNIRIVPLT 205 Query: 239 DGFMKLLAMTPIGKET----------FFI----NNDKQKMNATQFSIWFKAKATKAGVNK 284 +LL + +E F+ ++++ + +A + + Sbjct: 206 PEIAQLLRVYLERREAAEGQLKPSSPLFVAVGNRAGGKRISRRGIRLIVDGYLKEAQLKQ 265 Query: 285 SA------HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 + H +R + T++ +GA ++ G Y DR Sbjct: 266 TPGRTLSTHSLRHTAGTLALRSGAELRQVQDLLGHADPRTTCIYAHVGDRW 316 >gi|283851773|ref|ZP_06369051.1| integrase family protein [Desulfovibrio sp. FW1012B] gi|283572893|gb|EFC20875.1| integrase family protein [Desulfovibrio sp. FW1012B] Length = 395 Score = 105 bits (263), Expect = 8e-21, Method: Composition-based stats. Identities = 43/281 (15%), Positives = 93/281 (33%), Gaps = 18/281 (6%) Query: 70 TLKWLISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFDYRK---ITTKHIRSGVES 125 TL L +EY +L+ + I G+ + + + +RS + Sbjct: 93 TLAKLWTEYASHKPENHALS----TDRSRFETYIKPAFGEKEPAEVLTLDLDRMRSRLLK 148 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAI-NPCLS-VERPKRKTEGIRPWTKEDMQQFK 183 + +P + L + L ++ V++ +P + P+ E +++ + Sbjct: 149 QGKSPQTVKHVLALFKRLVRFGVKKGLCDSPDPRKQTISMPRVDNETTEDLDADELARLV 208 Query: 184 SFWSEGSQPRLA--FEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPD 239 + + A +++G+R + + + + I+ K G + L D Sbjct: 209 QAIEDEPNIQAANFMRLAMFTGMRRGELFKLEWRDVDFERGFIHIRHPKGGKSQKIPLND 268 Query: 240 GFMKLLAMTPI--GKETFFINNDKQKM-NATQFSIWFKAKATKAGVNKSAHGVRKFSATI 296 +LA P F ++ S KA+A+ + HG+R A+ Sbjct: 269 AARAVLASHPHVENSPYVFPGQGGKQRVTIQVASNRIKARASLPADFRPLHGLRHLFAST 328 Query: 297 SADAG-ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336 A +G L K+ + + Y+ D Sbjct: 329 LASSGQVDLLTLQKLLTHKSPNMTKRYSHLRDDALKQASGV 369 >gi|332041695|gb|EGI78047.1| phage integrase [Hylemonella gracilis ATCC 19624] Length = 369 Score = 105 bits (263), Expect = 8e-21, Method: Composition-based stats. Identities = 49/305 (16%), Positives = 89/305 (29%), Gaps = 53/305 (17%) Query: 72 KWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKIT--TKHIRSGVESR-- 126 L+ +Y LA + + D++ + + + H+R + Sbjct: 35 DALVLQYLAHVRVEKRLAQRTVELYTLDLDKLGEFARQAGVSLLQVHSAHVRRWIAQMHA 94 Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + L+ R + W RQ Y+ NP V PK + + +D + S+ Sbjct: 95 GGRSGRGIALILSGWRGFYAWLGRQGYITSNPVQDVRAPKAAKPLPKALSVDDAVRLASY 154 Query: 186 --------WSEG----------SQPRLAFEFLLYSGLRCSDSCRA-------------GV 214 +G ++ E L SGLR S+ G Sbjct: 155 RGGESGADTPQGDALDDDPWFSARDAAMTELLYSSGLRVSELTGLDVAPSEAARKAGRGW 214 Query: 215 QHLQNNIFSIKTQKTGTIITVELPDGFMKLL-------------AMTPIGKETFFINNDK 261 LQ + K G V + K L A G+ FI + Sbjct: 215 LDLQAGEVEV-QGKGGKRRAVPVGTAARKALLQWLEVRGQGVSAAALQDGQTALFIGRNG 273 Query: 262 QKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319 ++ K ++ AG+ H +R A+ + + G + Sbjct: 274 TRLTPQSIWQRLKRRSLLAGLATPVHPHMLRHSFASHVLQSSGDLRAVQELLGHANIGTT 333 Query: 320 ETYTK 324 + YT+ Sbjct: 334 QVYTR 338 >gi|284035039|ref|YP_003384969.1| integrase family protein [Spirosoma linguale DSM 74] gi|283814332|gb|ADB36170.1| integrase family protein [Spirosoma linguale DSM 74] Length = 298 Score = 105 bits (263), Expect = 8e-21, Method: Composition-based stats. Identities = 41/276 (14%), Positives = 93/276 (33%), Gaps = 28/276 (10%) Query: 76 SEYRKSAHW-GSLAVNSRISFESYFDQIIR-KSGDFDYRKITT---KHIRSGVESRKHT- 129 ++ + L+ ++ ++ + +Q + + + +H+RS + S + Sbjct: 5 QDFLAHIRYEKRLSHHTLTAYANDLEQFCTFLLAECNIDQPERADFRHVRSWIVSLVESG 64 Query: 130 --PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 SS + + ++R F + +R++ + +P ++ K + ++ M+ Sbjct: 65 MDKSSVNRKIATLRNFFGFLLRRKVIDFDPMSKIQALKASKRLPQYVEEKPMEMLLDDIE 124 Query: 188 -----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGF 241 EG + +L E L +G+R S+ + +I K V L Sbjct: 125 FPDTFEGLRDKLVLELLYGTGIRLSELTGLKTTDVNLYEKTIVVLGKRNKHRIVPLNQPL 184 Query: 242 MKLLAM----------TPIGKETFFINNDKQKMNATQFSIWFKAK---ATKAGVNKSAHG 288 +L+ +++ K T G KS H Sbjct: 185 FELIQQYNLLKEKEFSGQADTAHLIVSDKGVAAYPVLIQRIVKRHLTLVTTLG-TKSPHV 243 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 +R AT + GA + + G ++ + YT Sbjct: 244 LRHTFATHLLNRGADLNAIKDLLGHSSLAATQIYTH 279 >gi|168218110|ref|ZP_02643735.1| DNA integration/recombination protein [Clostridium perfringens NCTC 8239] gi|182379864|gb|EDT77343.1| DNA integration/recombination protein [Clostridium perfringens NCTC 8239] Length = 338 Score = 105 bits (263), Expect = 8e-21, Method: Composition-based stats. Identities = 42/296 (14%), Positives = 90/296 (30%), Gaps = 48/296 (16%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGVESRKH 128 ++ + + L S +E + + D + +HIR+ ++ K Sbjct: 14 DVLDTFMTDCKYRDLRRASIRLYERSLKLLFKFLEDDYKLIYVEDVKEEHIRNYIKFTKE 73 Query: 129 TPS----------------------------SAIQFLTSMRVLFKWAVRQEYVAINPCLS 160 + ++ ++++ FKW V +Y+ NP Sbjct: 74 RGKYSYVSNDNNLDINSPQNRGDFGQPISLCTLDSYVGTIKMFFKWCVDNKYLKQNPTNK 133 Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQH 216 ++R K + T ++ + + + + LL +G+R + Sbjct: 134 IKRIKFSRNPKQEVTIDEFNKLLQNLDLTLFSEYRDYVIIQLLLDTGMRIGECLELKEDD 193 Query: 217 LQNN----IFSIKTQKTGTIITVELPDGFMKLLAMTP------IGKETFFINNDKQKMNA 266 + S + K V + + L +G E F+ N K Sbjct: 194 VDIRNKTIFISAEIAKGRKDRYVFFSNIMQRTLEKWLIYKDRYVGSEYLFVTNRGSKYQI 253 Query: 267 TQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320 F + +A ++K + H +R A +G + L G +V E Sbjct: 254 HSFEKHMRNYLKRARIDKKITPHTLRNNFAKRFLMSGGDIYTLSKLLGHSSVRVTE 309 >gi|198283395|ref|YP_002219716.1| integrase family protein [Acidithiobacillus ferrooxidans ATCC 53993] gi|198247916|gb|ACH83509.1| integrase family protein [Acidithiobacillus ferrooxidans ATCC 53993] Length = 331 Score = 105 bits (263), Expect = 8e-21, Method: Composition-based stats. Identities = 54/305 (17%), Positives = 99/305 (32%), Gaps = 31/305 (10%) Query: 29 HGRRIRLPYPHESTFIPA------YMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSA 82 GRR+ P S+ A + LT ++P E P L ++ Y K Sbjct: 18 DGRRLHRILPAGSSARDAKQVEARLRAELTSASPLPERAGDPP-----LAAVMPLYLKHL 72 Query: 83 HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRV 142 + + + + + + K IR + P++ + L +++ Sbjct: 73 E-HLRSPETARFHAARITPWLAQYTASEAPKCAAMIIRDMTGAYA--PATINRSLGALKK 129 Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS 202 A QE N ++R E T E + + S S+ + L++ Sbjct: 130 ALTLAWEQELTPENYGARIKRLPEHNERHIYLTLEQVNELASHASDPVAAAIW--IALFT 187 Query: 203 GLRCSDSCRAGVQHLQNNIFSIKTQ--KTGTIITVELPDGFMKLLAMTPIGKETFFINND 260 G R + + + + +I+ KT TV + L P+ Sbjct: 188 GCRRGEITKLKAEDVGETTITIRAGNTKTLKTRTVPIIGPMRLWLPFIPL---------- 237 Query: 261 KQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319 +NA F+ KAG+ H +R A+I +GA + + G + Sbjct: 238 --PINAEGLKSGFRRAREKAGLPHLHFHDLRHSCASILLASGADLYTISRILGHSSTKMT 295 Query: 320 ETYTK 324 E Y Sbjct: 296 ERYAH 300 >gi|255291939|dbj|BAH90427.1| tyrosine recombinase [uncultured bacterium] Length = 320 Score = 105 bits (263), Expect = 8e-21, Method: Composition-based stats. Identities = 46/290 (15%), Positives = 82/290 (28%), Gaps = 38/290 (13%) Query: 72 KWLISEYRKSAH-WGSLAVNSRISFESYFDQI--IRKSGDFDYRKITTKHIRSGVESR-- 126 LI Y + LA + + D++ D + H+R V Sbjct: 12 AALIERYLEHVRVEKRLAARTVTLYGLDLDKLGQFAVQDDVGLTAVQGTHVRRWVARMHA 71 Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + L+ R + W RQ +A NP V P++ + ++ Q Sbjct: 72 GGRSGRGIALILSGWRGFYAWLGRQGLIAANPVQDVRAPRQPRPLPKALGVDEAVQLAEH 131 Query: 186 WSE------GSQPRLAFEFLLYSGLRCSDSCRA-------------GVQHLQNNIFSIKT 226 +E ++ E L SGLR + G L + Sbjct: 132 VAESDDPWLDARDAAMVELLYGSGLRVGELAGLDLTASDAALQAGRGWIDLAGAEVQV-Q 190 Query: 227 QKTGTIITVELPDGFMKLLA----------MTPIGKETFFINNDKQKMNATQFSIWFKAK 276 K V L + L + FI ++ A K + Sbjct: 191 GKGAKRRVVPLGRQAVAALRHWLALRGQVAAVDAAAQALFIGRRGTRLTAQAIWQRLKRR 250 Query: 277 ATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 + +AG+ H +R A+ + + G + + YT+ Sbjct: 251 SLQAGLATPVHPHMLRHSFASHLLQSSGDLRAVQELLGHANIGTTQVYTR 300 >gi|253583755|ref|ZP_04860953.1| integrase/recombinase [Fusobacterium varium ATCC 27725] gi|251834327|gb|EES62890.1| integrase/recombinase [Fusobacterium varium ATCC 27725] Length = 294 Score = 105 bits (263), Expect = 8e-21, Method: Composition-based stats. Identities = 49/272 (18%), Positives = 97/272 (35%), Gaps = 24/272 (8%) Query: 75 ISEYRKSAHWG-SLAVNSRISFESYFDQI------IRKSGDFD-YRKITTKHIRSGVESR 126 I ++ A +G + ++N+ S + Q+ I K D + + ++ Sbjct: 8 IKDFLYFAEFGENKSLNTIKSLKKDLSQLSEYLKNIEKIEDISKITPVMLRGFIIELQKN 67 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + S + L+S+R FK+ ++ + NP + P + E T E++ + + Sbjct: 68 EVGKRSINRKLSSLRSFFKYLIKNNLIKNNPIEIINSPSFEAEKPDILTLEEINKLREVI 127 Query: 187 SE----GSQPRLAFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQKTGTIITVEL--P 238 + G + RL E L SG+ ++ G Q L N + KT + Sbjct: 128 NIDNTNGLRDRLILELLYSSGITSTEMLGIGEQVFDLDNRTLLVSNGKTNRTVFFSQRTR 187 Query: 239 DGFMKLLAM------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290 + F + + F+N +++ A KAG+ + S + R Sbjct: 188 EYFKRYIEAKKEKYKEKYNSSILFVNGSGNRLSDRSLRRIVDRYAAKAGITREISPYSFR 247 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETY 322 A G + L G T++ + Y Sbjct: 248 HTFAVHLLAKGMGLNFLQELMGHVTIESTKIY 279 >gi|261337541|ref|ZP_05965425.1| tyrosine recombinase XerD [Bifidobacterium gallicum DSM 20093] gi|270277948|gb|EFA23802.1| tyrosine recombinase XerD [Bifidobacterium gallicum DSM 20093] Length = 306 Score = 105 bits (263), Expect = 9e-21, Method: Composition-based stats. Identities = 39/271 (14%), Positives = 94/271 (34%), Gaps = 31/271 (11%) Query: 85 GSLAVNSRISFESYFDQ---IIRKSGDFDYRKITTKHIRSG---VESRKHTPSSAIQFLT 138 L+ + ++ + +Q + G + +I T+ + ++++ P+S + L Sbjct: 18 RGLSRATLDAYRTDLEQYLTFLDARGLNEPTRIRTEDVEQFVQHLDAQGLQPASIARRLA 77 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS--------EGS 190 +R+ ++ +++ VA++ ++ PK + +D+ Q + Sbjct: 78 CVRMFHRFLLQERAVAVDVTATMHAPKTGEHLPDVLSVDDVFQLLDTAQQMASTGDVVAT 137 Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQN-NIFSIKTQKTGTIITVEL-----------P 238 + E L +G R S++ + + + T K V Sbjct: 138 RDWALLEMLYATGARVSEAVGLNLDDIDETDRVMRLTGKGSKQRLVPFGSTAAQALQQYL 197 Query: 239 DGFMKLLAMTPIGKE---TFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFS 293 D +L G+ ++N ++++ + A +A + + H +R Sbjct: 198 DASRPVLEAKAKGERELRAVWLNKRGKRLSRQSAWEVLQTAAGRAKLTRPIHPHTLRHSF 257 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTK 324 AT GA + G +V + YT Sbjct: 258 ATHLIQGGADVRSVQELLGHASVQTTQIYTH 288 >gi|312131663|ref|YP_003999003.1| integrase family protein [Leadbetterella byssophila DSM 17132] gi|311908209|gb|ADQ18650.1| integrase family protein [Leadbetterella byssophila DSM 17132] Length = 275 Score = 105 bits (263), Expect = 9e-21, Method: Composition-based stats. Identities = 35/170 (20%), Positives = 67/170 (39%), Gaps = 9/170 (5%) Query: 163 RPKRKTE-GIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--N 219 PKRK E + ++KE++++ + + + GLR SD + ++ + Sbjct: 93 YPKRKFESLPKYFSKEEIKRIFDATP-NVKHKAILMIIYSCGLRVSDLINLKMSDIKTHD 151 Query: 220 NIFSIKTQKTGTIITVELPDGFMKLLAMTPIG---KETFFINNDKQKMNATQFSIWFKAK 276 + SI++ K V LPD +K+L K F N D + + + K Sbjct: 152 KLLSIRSTKNSKDRWVTLPDPLIKILRSYYNEYQPKNYLFENPDGGQYSERSVQLILKRA 211 Query: 277 ATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 G+ + H +R A +G H + + G +++ E Y + Sbjct: 212 LKNGGIKTAGTVHSLRHSFAIHLLQSGTDLHTVQSLMGHQSIKTTEIYAQ 261 >gi|213964199|ref|ZP_03392435.1| tyrosine recombinase XerC [Capnocytophaga sputigena Capno] gi|213953166|gb|EEB64512.1| tyrosine recombinase XerC [Capnocytophaga sputigena Capno] Length = 308 Score = 105 bits (263), Expect = 9e-21, Method: Composition-based stats. Identities = 34/260 (13%), Positives = 91/260 (35%), Gaps = 25/260 (9%) Query: 89 VNSRISFESYFDQIIRKSGDF----DYRKITTKHIRSGVESRKH---TPSSAIQFLTSMR 141 + ++ I + D + + I+ + + S + L++++ Sbjct: 22 EAYKHDLRAFEKFIKSEYEDKEEECPLERADQEDIKKWIIQLSQQEMSFRSINRKLSALK 81 Query: 142 VLFKWAVRQEYVAINPC-LSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS-----QPRLA 195 + + + + + ++P + K + P+++ ++++ S++S S + R Sbjct: 82 TYYTFLKKTKQIEVSPFEKGIFLLKTEKRQKLPFSEAEIEKVLSYFSSKSSFDEVRDRAV 141 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFMKLLA-------- 246 E L +G+R S+ + + +K G + + + L Sbjct: 142 IEMLYATGIRRSELANLRLSDVDLAQKQLKVSGKGDKERYIPIIPELEETLKEYLKLREE 201 Query: 247 -MTPIGKETFFINNDKQKMNATQFSIWFKAK--ATKAGVNKSAHGVRKFSATISADAGAT 303 + F+ + +K+ +T + A + S H +R A+ D GA Sbjct: 202 VANEKSQNYLFLVKNGKKLYSTLVYRIINSYFSAVTPKKDVSPHVLRHSFASHLLDNGAD 261 Query: 304 AHELMATYGWKTVDQAETYT 323 + + G ++ + YT Sbjct: 262 LNTVKELLGHSSLASTQVYT 281 >gi|156937341|ref|YP_001435137.1| phage integrase family protein [Ignicoccus hospitalis KIN4/I] gi|156566325|gb|ABU81730.1| phage integrase family protein [Ignicoccus hospitalis KIN4/I] Length = 604 Score = 105 bits (263), Expect = 9e-21, Method: Composition-based stats. Identities = 43/290 (14%), Positives = 85/290 (29%), Gaps = 40/290 (13%) Query: 57 KREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITT 116 K + +P L I EY + + S+ S + GD ++ Sbjct: 2 KEPPLKPSPDEP--LSSAIEEYLEFMEVSGANKKTLKSYRSALKDFLSVVGDKRVGEVKY 59 Query: 117 KHIRSG-VESRKHT-PSSAIQFLTS-----------MRVLFKWAVRQEYVAINPCLSVER 163 + + K P S + + +R KW + P + Sbjct: 60 EDYVKWVRKRMKEGFPRSVKKDKRAQQTTLHYYSLFVRNFLKWLGLEGL----PAV---- 111 Query: 164 PKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQ--HLQNNI 221 PK + + + E++ E L LL +GLR S++ + + Sbjct: 112 PKPRKDSVEALKPEEVAALLQAAYEDPIDFLIVSLLLETGLRASEALNVTLDKVDFRRRQ 171 Query: 222 FSIKTQKTGTIITV--ELPDG--FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKA 277 +++ + + L + + P G+ ++ K A Sbjct: 172 IAVRGKYGKERVVFYGPLTEEALRRAWSYIAPSGRLV--------PLSYQALYKRLKRLA 223 Query: 278 TKAGV---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 KAG+ H +R AT + G + + G + + Y Sbjct: 224 KKAGLPEHKLHPHALRHTFATEALRRGMSLPAVQRLLGHSDIKTTQIYLH 273 >gi|144897317|emb|CAM74181.1| Tyrosine recombinase xerD [Magnetospirillum gryphiswaldense MSR-1] Length = 306 Score = 105 bits (263), Expect = 9e-21, Method: Composition-based stats. Identities = 40/266 (15%), Positives = 86/266 (32%), Gaps = 27/266 (10%) Query: 85 GSLAVNSRISFESYFDQI---IRKSGDFDYRKITTK---HIRSGVESRKHTPSSAIQFLT 138 + A+N+ ++ D + + K G ++R+ ++ T + A + L+ Sbjct: 18 RAAAINTLDAYRRDLDDLDNYLTKRGGAPLSARPADLAGYMRALADAGMATRTQA-RRLS 76 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-----SEGSQPR 193 +R + + + + A +P ++ P+ + +++ + +G Sbjct: 77 CLRQFYGFVFAEGWRADDPTSRLDAPRLGRSLPKYLSEKQVGDLLDAARALESPQGEMMT 136 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHL-QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGK 252 E L +GLR S+ + ++ + K V L D L + + Sbjct: 137 ALLELLYATGLRVSELVGLPYSAVARDPALLVVRGKGDKERMVPLSDPARAALRVWLPLR 196 Query: 253 ETFFINNDKQKM-----------NATQFSIWFKAKATKAGVN---KSAHGVRKFSATISA 298 + + F+ KAG++ S H +R AT Sbjct: 197 QDLLGKKKTSRWLFPGSGKTGHLTRAGFARALLRVGMKAGIDPRRLSPHVLRHAFATHLL 256 Query: 299 DAGATAHELMATYGWKTVDQAETYTK 324 GA + G + E YT Sbjct: 257 AHGADLRVVQELLGHADIATTEIYTH 282 >gi|283458429|ref|YP_003363053.1| site-specific recombinase XerD [Rothia mucilaginosa DY-18] gi|283134468|dbj|BAI65233.1| site-specific recombinase XerD [Rothia mucilaginosa DY-18] Length = 437 Score = 105 bits (263), Expect = 9e-21, Method: Composition-based stats. Identities = 44/227 (19%), Positives = 76/227 (33%), Gaps = 31/227 (13%) Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 P+S + + ++R + V V +P V PK + + ED+Q+ + Sbjct: 190 GPNSIARTMAAVRGAHAFWVSALIVPTDPAAPVTPPKNVKRLPKAVSVEDIQRLLAVPDR 249 Query: 189 ----GSQPRLAFEFLLYSGLRCSDSCRAGVQHL---------QNNIFSIKT-----QKTG 230 G + R EFL +G R S+ A + + N ++ K Sbjct: 250 ETATGLRNRAILEFLYATGARVSEMLNADIDDVHFEGTLTDEDGNQITLPGYVRLFGKGN 309 Query: 231 TIITVELPDGFMKLL-----AMTPI------GKETFFINNDKQKMNATQFSIWFKAKATK 279 V + K + P G F+N ++ + K A Sbjct: 310 KERLVPIGSYAQKAIQDYLVRARPSLVAHGKGTAALFVNGRGGRLGRQGAWLILKEAAEA 369 Query: 280 AGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 AG+ + S H +R AT GA + G ++ + YTK Sbjct: 370 AGLSSDFSPHSMRHSFATHLLQGGADIRVVQELLGHASIATTQVYTK 416 >gi|163814364|ref|ZP_02205753.1| hypothetical protein COPEUT_00515 [Coprococcus eutactus ATCC 27759] gi|158449999|gb|EDP26994.1| hypothetical protein COPEUT_00515 [Coprococcus eutactus ATCC 27759] Length = 323 Score = 105 bits (263), Expect = 9e-21, Method: Composition-based stats. Identities = 39/280 (13%), Positives = 96/280 (34%), Gaps = 15/280 (5%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS- 131 + + + H + + + ++++ + KITT+ +R + + T + Sbjct: 47 DFLDMFLTAKHLEGCSDKTIRYYRCNIEKMLDTI-NIPVIKITTEMLRKYLVEYQTTNNC 105 Query: 132 ---SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 + S+ F W ++Y+ +P + + K E ++ + + Sbjct: 106 GKVTIDNIRRSLSTFFSWLEEEDYIIKSPMKRIHKVKTAVIVKDTIPDEKIEILRDNCN- 164 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG-----FMK 243 + R +FLL +G+R + R + + + G D + Sbjct: 165 NLRDRAMIDFLLSTGIRVGELVRLNIDDIDFSERECVVYGKGDKERKAYFDAKTKIHLLN 224 Query: 244 LLAMTPIGKETFF--INNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADA 300 + F +N ++ + + + K GV K H R+ AT + + Sbjct: 225 YIESRTDNNIALFVSLNKPHSRLTESGVELRLREMGKKLGVEKVHPHKFRRTMATRAIEK 284 Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340 G ++ G + +D Y ++ + + + + IS Sbjct: 285 GMPIEQVQKILGHEQIDTTLRYA-MVNQNNVKLSHRKYIS 323 >gi|332185243|ref|ZP_08386992.1| phage integrase, N-terminal SAM-like domain protein [Sphingomonas sp. S17] gi|332014967|gb|EGI57023.1| phage integrase, N-terminal SAM-like domain protein [Sphingomonas sp. S17] Length = 299 Score = 105 bits (262), Expect = 9e-21, Method: Composition-based stats. Identities = 45/248 (18%), Positives = 82/248 (33%), Gaps = 20/248 (8%) Query: 95 FESYFDQIIRKSGDFDYRKITT-KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYV 153 + S G + + G T + + ++R + + + Sbjct: 30 YRSDLTLAGEAMGGLAEADEAALRRLAEGWACLATT--TVARKAAALRRFYAFLHEEGLR 87 Query: 154 AINPCLSVERPKRKTEGIRPWTKEDMQQFKSF--------WSEGSQPRLA--FEFLLYSG 203 +P ++ RP ++ + + D+ + + + RLA E L SG Sbjct: 88 VDDPASALPRPGQRRSLPKVLSHADIDRLFAAIGERIGVAHPAPNDLRLAALIELLYGSG 147 Query: 204 LRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET---FFINN 259 LR S+ + + F I K G V + D +A + T + Sbjct: 148 LRASELVALPRNAIHPDRPFLILRGKGGAERMVPISDRARAAVAAWRVHVPTDKAWLFPG 207 Query: 260 DKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTV 316 K+ ++ + KA A +AG+ S H +R AT GA + A G + Sbjct: 208 GKRHLSRIRLYQLVKALAAEAGIPPDRVSPHVLRHAFATHLLGGGADLRAVQAMLGHADI 267 Query: 317 DQAETYTK 324 E YT Sbjct: 268 ATTEIYTH 275 >gi|325662745|ref|ZP_08151339.1| hypothetical protein HMPREF0490_02079 [Lachnospiraceae bacterium 4_1_37FAA] gi|325470982|gb|EGC74210.1| hypothetical protein HMPREF0490_02079 [Lachnospiraceae bacterium 4_1_37FAA] Length = 361 Score = 105 bits (262), Expect = 9e-21, Method: Composition-based stats. Identities = 51/283 (18%), Positives = 93/283 (32%), Gaps = 30/283 (10%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVE----- 124 + + Y + L ++ IS D+ I+ G +IT K IR Sbjct: 46 FQDFVDLYFEDMK-HRLKESTIISKRYMVDKKILPVFGKIPINEITPKDIRKWQNGLTAY 104 Query: 125 SRKHTPSSAIQFLTSMR----VLFKWAVRQEYVAINPCLSVE-RPKRKTEGIRPWTKEDM 179 K+ A +L ++ +F +AV+ + NPC K E ++ WTK + Sbjct: 105 RDKNGKPYAQTYLRAINNQITAMFNYAVKYYDLRENPCTKAGSMGKSNAEEMQFWTKAEF 164 Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT---------- 229 +QF + + AF + Y+G+R + C + +I KT Sbjct: 165 EQFITAVQDKPASYTAFMTMYYTGMRVGELCALTPADVDLKNNTIAISKTFQRINGKDVI 224 Query: 230 ------GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283 + + +P L N+ + K+GV Sbjct: 225 WAPKTPKSNRVITIPQTLADCLKTYMDKCYEIQPNDRLFPYTKHFLNHEMLRGCKKSGVK 284 Query: 284 K-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324 K H +R A++ + G + G + + TY+ Sbjct: 285 KIRVHDLRHSHASLLIEMGCQPLLIADRLGHEKIQTTLNTYSH 327 >gi|284991929|ref|YP_003410483.1| integrase family protein [Geodermatophilus obscurus DSM 43160] gi|284065174|gb|ADB76112.1| integrase family protein [Geodermatophilus obscurus DSM 43160] Length = 365 Score = 105 bits (262), Expect = 9e-21, Method: Composition-based stats. Identities = 57/335 (17%), Positives = 111/335 (33%), Gaps = 44/335 (13%) Query: 10 FVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69 + ++ R G+ K RR+ ++ SA+ T + Sbjct: 17 YRSRYRDAGGRQ---HEKRFQRRV-----DAQRWLDEQTSAIVTQTWTAPERGRVTVEAW 68 Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESR-- 126 +WL ++ L ++ + S I+ + G IT + + V Sbjct: 69 AEQWLAAQ-------TGLKPSTLYRYRSLLRAQILPRWGRHRLADITHADVAAWVAQLVA 121 Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 P + Q + ++ AVR + NP V P+ + R T+E++++ Sbjct: 122 GGLAPPTVRQAHRVLALILTLAVRDGRIPRNPAAGVPLPRTRRADPRFLTREEVERLADA 181 Query: 186 WSE-GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ---------------NNIFSIKTQKT 229 E G R L Y+GLR + V+ + T KT Sbjct: 182 AGEYGDVVR----LLAYTGLRFGEMAALRVRRVDFLRRRLTVAESATEVGGTVEYGTPKT 237 Query: 230 GTIITVELPDGFMKLL--AMTPIGKETFFINNDKQKMNATQ--FSIWFKAKATKAGV-NK 284 TV +P ++ L G++ + + + + +F A AG+ + Sbjct: 238 HQQRTVPIPAVLVEPLSRRCGGKGRDDLVLTSPGGAVLRSGNFRRRFFDPAAKAAGLEDL 297 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319 S H +R +A++ +GA + G + Sbjct: 298 SPHDLRHTAASLLVASGANVKAVQRMLGHASAAMT 332 >gi|13473085|ref|NP_104652.1| site-specific tyrosine recombinase XerD [Mesorhizobium loti MAFF303099] gi|34222995|sp|Q98FX8|XERD_RHILO RecName: Full=Tyrosine recombinase xerD gi|14023833|dbj|BAB50438.1| site-specific recombinase [Mesorhizobium loti MAFF303099] Length = 305 Score = 105 bits (262), Expect = 9e-21, Method: Composition-based stats. Identities = 47/281 (16%), Positives = 94/281 (33%), Gaps = 31/281 (11%) Query: 75 ISEYRKS-AHWGSLAVNSRISFESYFDQII--RKSGDFDYRKITTKHIRSGVESRKHTPS 131 I + + + A N+ S+ + G + + R P+ Sbjct: 7 IEAFLEMMSAERGAAENTLSSYRRDLEDASSGIDGGLAGAAAADIRAYLDDIAERGFAPT 66 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE--- 188 S + L+++R FK+ + +P +++ PK+ + ++ + + + Sbjct: 67 SQARKLSAIRQFFKFLYAEGLRTDDPTGTLDSPKKARPLPKTMSEAETGRLIDRAAVEAG 126 Query: 189 ----GSQPRLA-------FEFLLYSGLRCSDSCRAGVQ-HLQNNIFSIKTQKTGTIITVE 236 G RLA E L +GLR S+ V +++ F + K V Sbjct: 127 DAGLGYSDRLAALRLHALVEVLYATGLRVSELVGLPVTVAQRDDRFFMVRGKGDKERMVP 186 Query: 237 LPDGFMKLLAMT-------PIGKETFFIN---NDKQKMNATQFSIWFKAKATKAGV---N 283 L + P ++ F+ +D ++ F+ K A +AG+ Sbjct: 187 LSAKARVAMRAWLAARAGVPAFADSPFLFPAASDSGYLSRQVFARDLKGLAARAGIASAK 246 Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 S H +R A+ GA + G + + YT Sbjct: 247 ISPHVLRHAFASHLLQNGADLRAVQQLLGHADISTTQIYTH 287 >gi|85708193|ref|ZP_01039259.1| site-specific recombinase, phage integrase family protein [Erythrobacter sp. NAP1] gi|85689727|gb|EAQ29730.1| site-specific recombinase, phage integrase family protein [Erythrobacter sp. NAP1] Length = 412 Score = 105 bits (262), Expect = 9e-21, Method: Composition-based stats. Identities = 59/343 (17%), Positives = 115/343 (33%), Gaps = 24/343 (6%) Query: 4 SLRLPPFVTKERTRHGKIIYYFRKGHGRRIR------LPYPHESTFIP-AYMSALTGSTP 56 S RLP F T+ G+ IY + R R E+ + A L Sbjct: 37 SRRLPGFGTRFY-ASGRTIYIVQAAMQGRTRTVTIGNAKILSEAQAMDVARRVLLRAQVG 95 Query: 57 KREYINSPRKKPTTL-KWLISEYRK--SAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK 113 +++ L + Y + S W + +++ + + + + Sbjct: 96 HNPAERRKKRRKVPLYADFLDTYWRKVSPSWKTSTLHTHGLYRQ--NYLQSAFAGMFLDE 153 Query: 114 ITTKHIRSGVESRKH--TPSSAIQFLTSMRVLFKWAVRQEYVA--INPCLSVERPKRKTE 169 I H++ P +A + +R L A NPC S+ KR+ Sbjct: 154 IEQSHVQEWFNRVTEIGGPGAANRSCEILRALMNKAEEWGIKPECSNPCSSIRMNKRRKC 213 Query: 170 GIRPWTKEDMQQFKSFWSEGSQPR----LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK 225 R + ++ ++ + + + R A + L+ +G R S+ ++ + Sbjct: 214 E-RFLSDQEFRRLGAAIDKHRKSRPVHCAALQLLILTGCRRSEITGLTWSEVKGRRLLLT 272 Query: 226 TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284 KTG TV L + ++ P K + + + + + ++ KAG+N Sbjct: 273 DSKTG-PRTVWLGEAAWTIIKCLPRHKRRPEVFFNPKTGGSVDLTCLWRDVREKAGMNGV 331 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 H +R A+ +A T + G + V Y D Sbjct: 332 RLHDLRHSFASHAAARSETLPMIGKLLGHRHVTTTARYAHLDD 374 >gi|326771762|ref|ZP_08231047.1| site-specific recombinase, phage integrase family [Actinomyces viscosus C505] gi|326637895|gb|EGE38796.1| site-specific recombinase, phage integrase family [Actinomyces viscosus C505] Length = 307 Score = 105 bits (262), Expect = 9e-21, Method: Composition-based stats. Identities = 45/296 (15%), Positives = 91/296 (30%), Gaps = 33/296 (11%) Query: 68 PTTLKWLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSG---------DFDYRKITTK 117 P T L+ YR L+ ++ ++ + ++ G D + Sbjct: 2 PRTRADLLDSYRSYLALQRDLSGHTVRAYLVDINDLLSFLGVGEGDAEPVDAALATLDLA 61 Query: 118 HIRSGVESRK---HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174 +R + + H+ ++ + S+R WA + + + P+ Sbjct: 62 DLRDWLAAMAASGHSRATLARRSASVRTFSSWAFETGLLTSDVAARLRAPRVDNRLPGVL 121 Query: 175 TKEDMQQFKSF--------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226 T + Q + E L +G+R S+ V L ++ +++ Sbjct: 122 TTQQASQLLKTASDLASDGHVLAVRDLAIIETLYATGVRVSELVGLDVADLDHSQRTLRV 181 Query: 227 -QKTGTIITVELPDGFMKLLA---------MTPIGKETFFINNDKQKMNATQFSIWFKAK 276 K TV K L F+ ++++ Sbjct: 182 LGKGRKERTVPYGLPAAKALETWLHRRGEICAVDAGGALFLGARGRRIDPRAVRDVVHRL 241 Query: 277 ATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIR 330 A V + HG+R +AT GA + G ++ + YT A+R+R Sbjct: 242 CAAAQVPDLGPHGLRHSTATHVLGGGADLRSVQEFLGHSSLATTQRYTHVSAERLR 297 >gi|289667446|ref|ZP_06488521.1| site-specific tyrosine recombinase XerC [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 305 Score = 105 bits (262), Expect = 9e-21, Method: Composition-based stats. Identities = 39/267 (14%), Positives = 91/267 (34%), Gaps = 27/267 (10%) Query: 85 GSLAVNSRISFESYFDQIIRKSGD-------------FDYRKITTKHIRSGV---ESRKH 128 ++ ++ ++ ++ + + D ++ + H+R V R Sbjct: 15 RQVSAHTLDAYRRDLAALVAWTAEHNTEDGAQQTATPLDTAQLDSAHLRQFVAAEHRRGL 74 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF--- 185 +P S + L++ R + W ++ +A +P ++ PK + + ++ + Sbjct: 75 SPKSLQRRLSACRSYYAWLLKHGRIASSPAAAMRAPKSPRKLPQVLDADEAVRLVEVPTD 134 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPD----G 240 G + R E SGLR S+ C + L ++ + K V + Sbjct: 135 APLGLRDRALLELFYSSGLRLSELCALRWRDLDLDSGLVMVLGKGSKQRLVPVGSHAIAA 194 Query: 241 FMKLLAMTPIGKET-FFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATIS 297 + L + +T F ++ I K A + G+ + H +R A+ Sbjct: 195 LREWLRDSGASADTHVFPGRAGGAISQRAVQIRIKQLALRQGMFKDVHPHMLRHSFASHI 254 Query: 298 ADAGATAHELMATYGWKTVDQAETYTK 324 ++ + G + + YT Sbjct: 255 LESSGDLRGVQELLGHSDIATTQIYTH 281 >gi|295133019|ref|YP_003583695.1| tyrosine recombinase XerC [Zunongwangia profunda SM-A87] gi|294981034|gb|ADF51499.1| tyrosine recombinase XerC [Zunongwangia profunda SM-A87] Length = 297 Score = 105 bits (262), Expect = 9e-21, Method: Composition-based stats. Identities = 42/264 (15%), Positives = 97/264 (36%), Gaps = 24/264 (9%) Query: 85 GSLAVNSRISFESYF----DQIIRKSGDFDYRKITTKHIRSGVESRKHTP---SSAIQFL 137 + ++++ ++E+ + ++ + D + + IR+ + S + S + + Sbjct: 14 KNYSLHTLKAYEADLLSFHEFLLAEFECSDLKNVDYAQIRNWIVSLSESGVSNRSINRKI 73 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPR 193 +S++ + + + ++I+P K + P++K ++ + EG + + Sbjct: 74 SSLKSYYYFLQKVGELSISPLQKHRPLKMAKKLQVPFSKVEVATVINDIDTDSFEGIRDK 133 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGK 252 E +GLR + G+ L +IK K + L K + + + Sbjct: 134 AIIELFYSAGLRRIELINLGINDLDLARLNIKVLGKRNKERYLPLLKSVAKTIELYIEQR 193 Query: 253 ETF----------FINNDKQKMNATQFSIWFKAK--ATKAGVNKSAHGVRKFSATISADA 300 FI++ KM+ + A V KS H +R AT + Sbjct: 194 SHIVPDTAKTSRLFISSKGDKMSESLVYRIINTYFSKVSAKVKKSPHILRHSFATHLLNE 253 Query: 301 GATAHELMATYGWKTVDQAETYTK 324 GA + + G ++ + YT Sbjct: 254 GANLNAVKELLGHSSLAATQIYTH 277 >gi|229004115|ref|ZP_04161916.1| Integrase/recombinase [Bacillus mycoides Rock1-4] gi|228756976|gb|EEM06220.1| Integrase/recombinase [Bacillus mycoides Rock1-4] Length = 306 Score = 105 bits (262), Expect = 9e-21, Method: Composition-based stats. Identities = 42/278 (15%), Positives = 92/278 (33%), Gaps = 31/278 (11%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYF---DQIIRKSGDFDYRKITTKHIRSGVE----SRK 127 + ++++ + +L+ + S+ + + + D R I ++S + +R Sbjct: 7 MKDFKEEKEFANLSPRTIQSYMATLHEFQEFCSERELIDTRDIREATVKSYLMYCQKTRG 66 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYV--AINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + + L +++ F + ++ + NP ++ K + I + E ++Q + Sbjct: 67 NNVVTRNTKLHHLKIFFNYLQHEDIISEKENPIRKMKLAKEDIK-IEVFQDEHIKQMLRY 125 Query: 186 WSE---------GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITV 235 + + FLL +G R + L ++ K TV Sbjct: 126 YRRLKARNKSFYAYRDHTIIIFLLGTGSRLGELINIRWSELDLVNQTVTLFGKARKQQTV 185 Query: 236 ELPDGFMK--------LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK---AGVNK 284 L + +K + E F + ++M++ + FK + V Sbjct: 186 PLTNKLVKEFCEYKVFMERELGRLPEYVFTTREGKQMSSNSVKLIFKRLKQVMNFSDVRL 245 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 SAH R A AG L + E Y Sbjct: 246 SAHTFRHTFAHRCLMAGMDVFTLQRMLRHSNLRMTERY 283 >gi|241764927|ref|ZP_04762927.1| integrase family protein [Acidovorax delafieldii 2AN] gi|241365489|gb|EER60254.1| integrase family protein [Acidovorax delafieldii 2AN] Length = 327 Score = 105 bits (262), Expect = 9e-21, Method: Composition-based stats. Identities = 42/290 (14%), Positives = 86/290 (29%), Gaps = 41/290 (14%) Query: 75 ISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKIT-----TKHIRSGVESRKH 128 + Y + A LA + + D++ R + + + + + S Sbjct: 15 VLRYLEHARVEKRLAARTLTLYALDLDKLARFAAAVQVPLLQLGSAHIRRFVAQMHSGGR 74 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 + L+ R F WA RQ ++ NP V P+ + +D + + Sbjct: 75 SGRGIALILSGWRGFFAWAGRQGLISHNPVQDVRAPRAPKPLPKALGVDDAVRLAEYDHS 134 Query: 189 G------SQPRLAFEFLLYSGLRCSDSCRA-------------GVQHLQNNIFSIKTQKT 229 G ++ E L GLR + G L+ + K Sbjct: 135 GADPWLEARDAAMVELLYGCGLRVGELVGLDAAPHADSRRQGRGWVDLEAGEAHV-FGKG 193 Query: 230 GTIITVELPDGFMKLL-------------AMTPIGKETFFINNDKQKMNATQFSIWFKAK 276 +V + M L +P F+ ++ A + + + Sbjct: 194 SKRRSVPVGAAAMAALRAWLALRAAPFGGDASPRLDAALFVGRRGVRLTAQSIWLRLRQR 253 Query: 277 ATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 + +AG+ H +R A+ + + G + + YT+ Sbjct: 254 SQQAGLTTPVHPHMLRHSFASHLLQSSGDLRAVQELLGHANITTTQVYTR 303 >gi|323479888|gb|ADX79327.1| phage integrase family protein [Enterococcus faecalis 62] Length = 223 Score = 105 bits (262), Expect = 9e-21, Method: Composition-based stats. Identities = 34/206 (16%), Positives = 79/206 (38%), Gaps = 19/206 (9%) Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 ++ ++ S+ ++ ++ LF + + ++Y+ NP + +ER K + + I P +++Q Sbjct: 1 MQEKEMQASTINVSVSRLKKLFDYMLIEKYIDYNPFVDIERLKEQRKVIYPLNDYEIKQM 60 Query: 183 KSFWSEGSQPRLA------FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236 + + +A ++ GLR S+ C + + NN I+ K V Sbjct: 61 LTVAKKHPYKHIAQRNVVILMLMIECGLRISEVCEIRDEDIMNNQIIIRKSKNNKDRAVA 120 Query: 237 LPDGFMKLLAMTPI---------GKETFFINNDKQKMNATQFSIWFKAKATKAGV-NK-- 284 + K + F ++N +K+N + + + + Sbjct: 121 VSPILKKEIIKYQRIKKRKFGLLEGNPFIVSNLGKKLNEKSIWQIMQEIKKQIDIRDCVR 180 Query: 285 -SAHGVRKFSATISADAGATAHELMA 309 S H +R A++ G + L + Sbjct: 181 FSGHTLRHTYASMQLRNGLDIYTLSS 206 >gi|126728166|ref|ZP_01743982.1| site-specific tyrosine recombinase XerC [Sagittula stellata E-37] gi|126711131|gb|EBA10181.1| site-specific tyrosine recombinase XerC [Sagittula stellata E-37] Length = 308 Score = 105 bits (262), Expect = 9e-21, Method: Composition-based stats. Identities = 48/296 (16%), Positives = 95/296 (32%), Gaps = 32/296 (10%) Query: 63 SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII--------RKSGDFDYRKI 114 SP + WL + N+ ++ + I G ++ Sbjct: 6 SPAARTALADWLDHA----KALREASDNTITAYRADVIDFIAFLTQHHAEPQGLAPLARV 61 Query: 115 TTKHIRSGVESRKHT---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171 TT +R+ + + T P S + L++++ ++W +E L+ PK + + Sbjct: 62 TTSDMRAWMAHLRRTEIGPRSMARKLSAVKTFYRWLADREGFEPTAVLATRAPKFQKKLP 121 Query: 172 RPWTKEDMQQFKSFWSE-------GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224 RP ++E + G++ L GLR S++ +HL Sbjct: 122 RPLSEEAARAMIDTVEIQSTTSWQGARDAAVVTLLYGCGLRISEALSLTGRHLPLTDSLR 181 Query: 225 KTQKTGTIITVELPDGFMKLLAM-------TPIGKETFFINNDKQKMNATQFSIWFKAKA 277 K V + + + P F +N + + Sbjct: 182 IVGKGNKERVVPVLPVARRAVETYLSLCPFPPERDVALFRGARGGPLNPRLIAKVTEQAR 241 Query: 278 TKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 + G+ +A H +R AT AG + G ++ + YT D++ L Sbjct: 242 MQLGLPATATPHAMRHSFATHLLHAGGDLRAIQELLGHASLSTTQAYT-AVDQVHL 296 >gi|121997131|ref|YP_001001918.1| phage integrase family protein [Halorhodospira halophila SL1] gi|121588536|gb|ABM61116.1| phage integrase family protein [Halorhodospira halophila SL1] Length = 379 Score = 105 bits (262), Expect = 9e-21, Method: Composition-based stats. Identities = 61/365 (16%), Positives = 119/365 (32%), Gaps = 33/365 (9%) Query: 4 SLRLPPFVTKERTRHGKIIYYFRKG------------HGRRIRLPYPHESTFIPAYMSAL 51 S R P + E G Y++R R I L + +++ Sbjct: 22 SDRKAPGLIVEVRPTGSATYFYRYRNHAGLTRSCKLARFREISLKDARS---LAREKASI 78 Query: 52 TGSTPKREYINSPRKKPTTLKWLISE-YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD 110 S + + R+ TLK E Y A + + ++ + G Sbjct: 79 VASGHDPQEEKNTRRASPTLKEYAEECYLPHAKSYKRSWKTDEIMLNH--HALPTLGTKK 136 Query: 111 YRKITTKHIRSGVESRKHT---PSSAIQFLTSMRVLFKWAVRQEY--VAINPCLSVERPK 165 I + + + K PS+ + LT + +FK A+ E V NP ++RP Sbjct: 137 MSDINRNQVEAIMNDMKSRGYAPSTVDRVLTLISYMFKVAMDNEIPGVVSNPTEKIKRPV 196 Query: 166 RKTEGIRPWTKEDMQQFKSFWSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQ--NNI 221 + T+E++ + + P + + +G R ++ A + N I Sbjct: 197 IDNKIENYLTREEVNRMLEAARRRNHPHIYSIIRMAVLTGARKAEILSARFEDFDLDNKI 256 Query: 222 FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281 ++I K G+ + + + FKA +G Sbjct: 257 WNIPKGKNGSRKVILAEKAVQMVKELPKQEGTDLLFPQPGTDKPYQCIQKPFKAVLRDSG 316 Query: 282 VNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNSRR 338 +++S H +R A++ G +E+ G + Y A +R +S R Sbjct: 317 IDESVRFHDLRHSYASLLVQGGVNIYEVKELLGHSQITTTMRYAHLSAQGLR---NHSNR 373 Query: 339 ISSVV 343 ++ + Sbjct: 374 LAETI 378 >gi|283479882|emb|CAY75798.1| Tyrosine recombinase xerD [Erwinia pyrifoliae DSM 12163] Length = 351 Score = 105 bits (262), Expect = 9e-21, Method: Composition-based stats. Identities = 44/289 (15%), Positives = 99/289 (34%), Gaps = 32/289 (11%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFE---SYFDQIIRKSGDFDYRKITTKHIRSGVESR 126 TL+ L + + + + F G +++ + + Sbjct: 20 TLRQLAESWLAHLVVAGRSPRTVQGYRERVRAFLXWCEPRGITYAPQVSLAVLEAYQRWL 79 Query: 127 KHTPSSAIQ---------FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI-RPWTK 176 + + + LT++R+LF+W +++ + NP + PK + + +++ Sbjct: 80 QGYRRADGKQLVVNSQLGVLTAIRMLFRWLLQRHVILYNPAELLALPKEERRLPAQVFSE 139 Query: 177 ED----MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTG 230 + +Q + G + R E L SG+R S+ + + + +++ K G Sbjct: 140 AETRRVLQSLDAGTPPGLRNRAILELLWSSGIRRSELAGLLLSDVDFTRGVVNVRRGKGG 199 Query: 231 TIITVEL----PDGFMKLLA------MTPIGKETFFINNDKQKMNATQFSIWF-KAKATK 279 V + + L FI++ + + +A Sbjct: 200 KDXVVPVGHAALMWLGRYLKDVRPRLAQRFDSGHLFISHKGTGLAHGTLTAMAGRAIREG 259 Query: 280 AGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 A + K+ H R AT + GA + A G + ++ + YT+ A Sbjct: 260 AHLKKAGACHIFRHXMATQMLENGADTRHIQAILGHEKLETTQIYTRVA 308 >gi|284032633|ref|YP_003382564.1| integrase family protein [Kribbella flavida DSM 17836] gi|283811926|gb|ADB33765.1| integrase family protein [Kribbella flavida DSM 17836] Length = 312 Score = 105 bits (262), Expect = 9e-21, Method: Composition-based stats. Identities = 51/307 (16%), Positives = 107/307 (34%), Gaps = 29/307 (9%) Query: 58 REYINSPRKKPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRK---SGDFDYRK 113 + +++ P L+++Y + L+ +S ++ +I G D Sbjct: 3 PDDVSADPSVPEDFAALLADYERHLTAERGLSEHSVRAYMGDVADLIDHVTRLGHDDLSA 62 Query: 114 ITTKHIRSGVESRKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170 + + +RS + ++ S+ + T+ RV WA R +A +P + PK Sbjct: 63 LDIRGLRSWLAKQQSLGKARSTMARRATAARVFTAWAQRTGRIATDPGALLASPKAHKTL 122 Query: 171 IRPWTKEDMQQFKSFW--------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222 + D + G + E L +G+R + C V + + Sbjct: 123 PGVLGQADTRAVLDAAAVAADDGSPVGLRDLTIMELLYATGIRVGELCALDVDEVDRSRR 182 Query: 223 SIKTQKTGTIIT-----VELPDGFMKLLAMTPI-----GKETFFINNDKQKMNATQFSIW 272 ++ G V + LA+ P F+ +++ Sbjct: 183 VVRVFGKGRKERSVPYGVPAAEALETWLAVRPRLVRDGSGPALFLGARGGRIDQRTVRRV 242 Query: 273 FKAK--ATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRI 329 A+ A +A + S HG+R +AT + GA + G ++ + YT ++R+ Sbjct: 243 VHARIGAVEA-PDLSPHGLRHTAATHLLEGGADLRSVQELLGHASLATTQVYTHVSSERL 301 Query: 330 RLGIKNS 336 R + + Sbjct: 302 RSAYEQA 308 >gi|77463785|ref|YP_353289.1| phage-related integrase [Rhodobacter sphaeroides 2.4.1] gi|77388203|gb|ABA79388.1| possible phage-related integrase [Rhodobacter sphaeroides 2.4.1] Length = 413 Score = 105 bits (262), Expect = 9e-21, Method: Composition-based stats. Identities = 67/362 (18%), Positives = 125/362 (34%), Gaps = 46/362 (12%) Query: 15 RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKK----PTT 70 R RHG + G + L E +A G+ P E + K Sbjct: 43 RYRHGGVHRRMSLGAFPVLSLAGARERA-RQTLAAASAGTDPAAEVKAAKAPKLDGDRDK 101 Query: 71 LKWLISEYRKSAHWGSLAVNS--RISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH 128 +K LI ++ K H L + R E + ++ G+ D +I + + ++ Sbjct: 102 IKTLIGQFDK-RHLSKLKSGAVVRRELERH---VVSAWGERDVHQIGKRDVIDLLDGIAD 157 Query: 129 TPS--SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + +A + + F W V ++ +A +P V+ ++T R T ++++ F + Sbjct: 158 SGRVVTANRVRAYLAKFFGWCVERDILATSPAAGVKPAGKETSRARVLTDDEIRWFWTAC 217 Query: 187 SEGSQPRLAF-EFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMK 243 P F + LL +G R ++ + ++ +++ + K G V L Sbjct: 218 EAEGFPWGPFGKVLLLTGQRLNEVAQMTDSEIRGDLWHLTADRTKNGRAHDVPLTGAVRA 277 Query: 244 LLAMTPI-----GKETFFINNDKQKMNATQFSIWFKAKATKA----GV------------ 282 L G+ F + T S +FKA+A A G+ Sbjct: 278 ALDEVERVTDEEGRVRFIFTTTGR----TPVSGFFKARAVLAEAMVGIAQKERGEPVEIP 333 Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVD---QAETYTK--GADRIRLGIKNSR 337 + H +R+ +AT A G A + Y + AD R ++ Sbjct: 334 RWTFHDLRRTAATGMARLGIPVRVTEAVLNHVSGTGGGIVAVYQRHDYADEKRQALEAWA 393 Query: 338 RI 339 R Sbjct: 394 RF 395 >gi|261494505|ref|ZP_05990991.1| putative integrase/recombinase [Mannheimia haemolytica serotype A2 str. OVINE] gi|261309889|gb|EEY11106.1| putative integrase/recombinase [Mannheimia haemolytica serotype A2 str. OVINE] Length = 346 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 63/337 (18%), Positives = 105/337 (31%), Gaps = 31/337 (9%) Query: 7 LPPFVTKERTRHGK----IIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN 62 LP + R + G Y++ +G+ L Y + L K + N Sbjct: 12 LPQNLLCRRRKRGNGQIVEYYFYVLSNGKEKSLG-------TNKYEAVL--EAAKLNFEN 62 Query: 63 SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIR 120 S + + Y A N+R S + + GD KI KHI Sbjct: 63 SKKSPVVLFIDVAKRYELEIVPTKKAKNTRQSNLQAIRWLCKFFGDPPAPLEKIEPKHIS 122 Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVA-INPCLSVERPKRKTEGIRPWTKEDM 179 ++ RK TP+ A + ++ A Y +P V++ K + + Sbjct: 123 QYLQWRKDTPAVANIEVGLFNTIWNMAREWGYTTLPSPSQGVKKFPTKYREVYV-EDYIL 181 Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD 239 + F E E G R D C H+ + I I QKTG + E+ Sbjct: 182 DKIYEFADERMAD--IIETAYLLGQRPIDICNIHHSHIYDGILHITQQKTGKKVRFEISG 239 Query: 240 GFMKLLA-MTPIGKETFFINNDKQKMNATQFSIWFKAKATKA---------GVNK-SAHG 288 ++L + F N +K+ FK +A + K Sbjct: 240 RLKEILDKRLGYESDWIFTNKWGKKLKRRSLGDHFKEIRERAMKAYPELADEIAKVQMRD 299 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 +R +AT + T + G + Y + Sbjct: 300 MRAKAATDISLM-TTDEQAQKQLGHTSKRMTHHYIRK 335 >gi|254820529|ref|ZP_05225530.1| prophage integrase [Mycobacterium intracellulare ATCC 13950] Length = 340 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 48/304 (15%), Positives = 101/304 (33%), Gaps = 29/304 (9%) Query: 45 PAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QII 103 A+ + G PR +L + ++Y S +++ + + +++ +I Sbjct: 5 RAFKADRDGEAAIGARRFDPRLGRASLSAIWTQYSASKQ-PAVSPKTWSGYAQHWELRIS 63 Query: 104 RKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER 163 + G +I+ K ++ + P + + L +R + A + INP V Sbjct: 64 PRFGHVPVDEISRKDVQQFIGGLTVGPWAKLATLRLLRSILDMAREDGRIHINPAQGVSS 123 Query: 164 PKRK-TEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ---- 218 + E R + ++ + L ++GLR S+ V + Sbjct: 124 GRIPARERHRYLSATEVAALAHACGD---QGDIVTILAFTGLRWSELVGLRVGDIDLKAR 180 Query: 219 -----------NNIFSIKTQKTGTII-TVELPDGFMKLLAMTPIGKET---FFINNDKQK 263 + KT + TV LP + L + T + + Sbjct: 181 RLYVRQAAPDVEGRIIVGPPKTRAAVRTVPLPRIVIDALKPRIENRSTKEQAITSPNGGF 240 Query: 264 MNAT---QFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVD-QA 319 + + + + W KA + H +R A+++ +GA + T G T A Sbjct: 241 LRSNNWRRHTHWNKALKKTGLAPLTIHDLRHTYASLARKSGADLRYVQKTMGHSTPTVTA 300 Query: 320 ETYT 323 Y+ Sbjct: 301 NIYS 304 >gi|168185133|ref|ZP_02619797.1| tyrosine recombinase [Clostridium botulinum Bf] gi|182671818|gb|EDT83779.1| tyrosine recombinase [Clostridium botulinum Bf] Length = 327 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 47/278 (16%), Positives = 103/278 (37%), Gaps = 26/278 (9%) Query: 83 HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP----SSAIQFLT 138 + L+ N+ D I+ + + I+ I + ++ K+ ++ + + Sbjct: 41 RFLKLSKNNLPLNTDIKDVCIKDIDENFLKSISLIDIYNFLDYIKNYRDNCSNTRARKVA 100 Query: 139 SMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-----GSQP 192 ++ F + + + + +NP ++E PKR + ++ + + Sbjct: 101 VLKSFFNYLKNKVKIIELNPTKNLETPKRPKRQPVYLSLKESEMLLDAVKIKNGRNKERD 160 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL------- 245 L GLR S+ C + +++N+ I T K T+ L + +K + Sbjct: 161 YAIITLFLNCGLRLSELCNIKLSYIRNDTLII-TGKGDKQRTIYLNNSCLKAINEYLNVR 219 Query: 246 ----AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299 + + F++ KQK+N + AG++K + H +R +AT+ Sbjct: 220 NKLKNIKDKDSDYLFLSERKQKINKRSVQRIVQKFIEYAGLDKKYTVHKLRHTAATLLYK 279 Query: 300 AG-ATAHELMATYGWKTVDQAETYTK-GADRIRLGIKN 335 G L G + + YT D +R +K+ Sbjct: 280 YGEVDIRNLQVILGHENISTTTIYTHVDKDELRSALKS 317 >gi|108804268|ref|YP_644205.1| phage integrase [Rubrobacter xylanophilus DSM 9941] gi|108765511|gb|ABG04393.1| phage integrase [Rubrobacter xylanophilus DSM 9941] Length = 309 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 43/295 (14%), Positives = 103/295 (34%), Gaps = 34/295 (11%) Query: 62 NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISF----ESYFDQIIRKSGDFDYRKITTK 117 +SP +P + L+S Y ++ + ++ ++ ++ + + G + ++T + Sbjct: 6 SSPPARPGDEERLLSLYLRTLS----SPQTQKTYNTEIRAFLSYLRERLG-KNLGEVTAE 60 Query: 118 HIRSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS---VERPK-RKTEGI 171 I E + P++A + LT++R + +NP + P+ R+ Sbjct: 61 DISLYREHVTGAYAPATAAKKLTALRRFLTFTYMGGITRVNPEALKFFAKSPRVRQDPSY 120 Query: 172 RPWTKEDMQQFK-SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQK 228 T+E++ + + ++ + + GLR ++ V + + ++ + Sbjct: 121 NILTEEELSRMLSAARADNPRDHALLAVMAGCGLREAEVVGLRVGDFREHGDAVLLRVRG 180 Query: 229 TGTIIT-VELPDGFMKLLAM-----------TPIGKETFFINNDK--QKMNATQFSIWFK 274 G + V + +L+ ++ F + + + K Sbjct: 181 KGDKVRNVPVSPELWRLVQRYVLSSGRSLSSQTDARKPLFPSRVGKDRPLTTRSIQNIVK 240 Query: 275 AKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 AG+NK S H +R T A A + G Y + A+ Sbjct: 241 KYVRAAGINKPISPHSIRHTVGTNMAMNQAPLLVIQQFLGHSDPKTTMRYIRRAE 295 >gi|229193213|ref|ZP_04320164.1| Integrase [Bacillus cereus ATCC 10876] gi|228590190|gb|EEK48058.1| Integrase [Bacillus cereus ATCC 10876] Length = 345 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 50/314 (15%), Positives = 96/314 (30%), Gaps = 41/314 (13%) Query: 50 ALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF----DQIIRK 105 AL + E TL+ + L + + + D + Sbjct: 2 ALKRKKKRAERTTHKSYPKITLQQALDIAIAGKKAEGLRERTLTDYMKMWGYFTDWLAEN 61 Query: 106 SGDFDYRKITTKH--------------------IRSGVESRKHTPSSAIQFLTSMRVLFK 145 D +Y T + E R ++ L + R + Sbjct: 62 YSDIEYVNELTADIFRNYINYLQYDAIRYDGHKFITNREERGLKETTINIRLRTYRSMLN 121 Query: 146 WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS----FWSEGSQPRLAFEFLLY 201 + R+E + NP +V ++ + T+++++ + G + + LL Sbjct: 122 YLEREELIEYNPMDNVRLLRQDIDLTNCLTEDEVKAVLAQPNQRDYVGFRDFVIINLLLD 181 Query: 202 SGLRCSDSCRAGVQ--HLQNNIFSIKTQ--KTGTIITVELPDGFMKLL------AMTPIG 251 SGLR +++ V+ + ++ + K V + KLL Sbjct: 182 SGLRINEALNLRVEEIDFKTRFITLTGERNKNRKPRYVPISAFVAKLLLQLIEENRAHFK 241 Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKFSATISADAGATAHELM 308 + F++ + + A F+ K A KAG+ +AH R A G L Sbjct: 242 TDRIFLSCFGELLGANHFNKRLKYYAEKAGIKGKKVTAHVYRHTWAKNMILNGCDPFTLQ 301 Query: 309 ATYGWKTVDQAETY 322 GW + Y Sbjct: 302 KMGGWADMRTMRRY 315 >gi|310642278|ref|YP_003947036.1| integrase family protein [Paenibacillus polymyxa SC2] gi|309247228|gb|ADO56795.1| Integrase family protein [Paenibacillus polymyxa SC2] Length = 318 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 41/277 (14%), Positives = 93/277 (33%), Gaps = 25/277 (9%) Query: 91 SRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS---SAIQFLTSMRVLFKWA 147 ++ ++ Q +R D ++ H+ S + + + + + ++ F+ Sbjct: 40 TQKNYTGDVKQFLRTLRDKPLDQVKKIHVMSYLSKAREGGAGDSTRNRKHAAVNSFFRAL 99 Query: 148 VRQEYVAINPCLSVERPKR-KTEGIRPWTKEDMQQFK--SFWSEGSQPRLAFEFLLYSGL 204 E + NP +++ K K ++D+Q F ++ F ++Y GL Sbjct: 100 QEFELCSTNPAAGIKKAKTEKNRMPVYLDEKDIQPFLLAVEGKYANRNMAIFLLMVYMGL 159 Query: 205 RCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG--------FMKLLAMTPIGKETF 255 R + V ++ K T+ +P + L ++ Sbjct: 160 RVGEIHSLNVSDYSRERRTLDVFGKGRKWRTLPVPAAVCDFVEHALEERLTPWRGKEDAM 219 Query: 256 FINNDKQKMNATQFSIW----FKAKATKAGVNK----SAHGVRKFSATISADAGATAHEL 307 FI+ +++ F+ G+ + S+H +R AT+ GA + Sbjct: 220 FISQKGRRLAVRSIQQIATETFERFQQDKGLERREAYSSHKLRHTFATMLLRKGADLRTV 279 Query: 308 MATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344 G ++ YT DR + K ++ + Sbjct: 280 QELLGHSSIQTTTVYTHVTDREK--EKAMDKLDIQIP 314 >gi|288934630|ref|YP_003438689.1| lambda integrase [Klebsiella variicola At-22] gi|288889339|gb|ADC57657.1| lambda integrase [Klebsiella variicola At-22] Length = 361 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 59/352 (16%), Positives = 106/352 (30%), Gaps = 37/352 (10%) Query: 7 LPPFV-TKERTRHGKIIYYFRKG-HGRRIRLPYPHESTFIPAYMSA---LTGSTPKREYI 61 LP + ++R R +Y +R G+ I L + + A + + + Sbjct: 12 LPRNLTYRKRDR----LYSWRNPITGQEISLGRVDRKDAVAQAIEANNYIDQNYLPSSLL 67 Query: 62 NSPRKKPT-TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120 + + PT T + Y L N+ + I + G +TTK I Sbjct: 68 DRLKDVPTFTFSAWLERYEVILERRELKPNTMKVRRNQLATIKEEFGRIPLASVTTKDIA 127 Query: 121 SGVESRK--HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 +E S A + + +F+ A+ + ++ NP P K + R E Sbjct: 128 EFLEGYIVCDKKSMASGLRSVLLDVFREAIVEGHIDRNPAEPTRTPTPKVKRERLL-LEQ 186 Query: 179 MQQFKSFWSEGSQ-PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE- 236 + S S R A + L +G R D ++ I +KTG + V Sbjct: 187 FTIIRDAASSHSDWARNACDLALVTGQRREDITLLRFSAVKEERLFITQEKTGHKLAVPL 246 Query: 237 ----------LPDGFMKLLAMTPIGKETFFINNDK----QKMNATQFSIWFKAKATKAGV 282 L D + P + + + F + Sbjct: 247 DLKLDAAGLMLHDVIERCREGNPSDFMVYSPVRRGGRKPGPLTPDGLTQAFADIRDSTEL 306 Query: 283 NK-----SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY--TKGAD 327 S H +R A+ + G K + + Y +GA+ Sbjct: 307 KFGPNPPSFHEIR-SLASRLYENERGEEFAQRLLGHKNLTMTKKYLDARGAE 357 >gi|320539088|ref|ZP_08038759.1| putative phage integrase [Serratia symbiotica str. Tucson] gi|320030726|gb|EFW12734.1| putative phage integrase [Serratia symbiotica str. Tucson] Length = 356 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 53/353 (15%), Positives = 119/353 (33%), Gaps = 34/353 (9%) Query: 7 LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR- 65 LPP + R+ Y R + + A A+ + E + R Sbjct: 12 LPPNLY---VRNNGYYCY----RSPRNGKEFGMGTNKKEAVNQAIEPNITLFESYSQSRL 64 Query: 66 ------KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119 ++ + Y + L + + + + + ++ITTK I Sbjct: 65 INRLIGNNANSMLTWLDRYHEIISKRGLREKTLGDYSGRINLLKEYFVGTNLQEITTKDI 124 Query: 120 RSGVESRKH--TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177 + S +SA +++ +F+ A+ + + +N + P+ + + R + Sbjct: 125 AKLLNSYTDQGKAASAKLMRSTLLDIFREAIAEGMIQLNLVEATRNPRVEVKRERLSLEN 184 Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL 237 + ++ + S L+ + L +G R D + ++++ ++ QKTG +++ L Sbjct: 185 FLLIRQAATTLPSWIGLSMDIALLTGQRLGDIRKMKWSDIKDDKLYVEQQKTGVKLSIPL 244 Query: 238 PDGFMKLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKA-----GV 282 G + G ET + ++ + S WF G Sbjct: 245 SIGLPAVDMTLNSVIEICQKIHAGSETILASRKQEMLGEKTISKWFAKSRELTLLSWSGS 304 Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY--TKGADRIRLGI 333 S H +R + + G K+ E Y ++G++ I + + Sbjct: 305 PPSFHEIR-SLSARLYTDTISGEFAQKLLGHKSAAMTEKYQDSRGSEWIEIAV 356 >gi|313123990|ref|YP_004034249.1| integrase [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312280553|gb|ADQ61272.1| Putative integrase [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 370 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 53/362 (14%), Positives = 130/362 (35%), Gaps = 38/362 (10%) Query: 14 ERTRHGKIIYYFR-----KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68 ++ + GK +Y R G +R+ S + L + + ++ + Sbjct: 10 KKMKSGKYQWYQRYRDPLTGKIKRVTCLLSRGSQQARK-EAELILARKLADISDARTETN 68 Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG-DFDYRKITTKHIRSGVES-- 125 T+ L + + + + +++ G D + IT + ++S Sbjct: 69 ITIGELSKLFLDHERERGVKPTTLSVRRTGMSAMLKYFGEDAIAKNITKPMVTKYLQSSL 128 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV----ERPKRKTEGIRPWTKEDMQQ 181 +K T S+ + M ++ +A+ Y+ NP + + K + + +T E++ Sbjct: 129 KKKTNSTVHVYRVGMSTMYDFAIDYGYLTENPAKGLRIQWKPQKPTSITDKYFTDEELNN 188 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN------NIFSIKTQKTGTI--- 232 + RL F+F+ +G+R ++ +++ + K+ + Sbjct: 189 LFAVIDRPDYLRL-FKFMYLTGMRFGEATGLQFKNIHDQYADITGTMWANGIKSDSPKTL 247 Query: 233 ---ITVELPDGFMKLL------AMTPIGKETFFINNDKQ-KMNATQFSIWFKAKATKAGV 282 +V LP ++++ + FIN K +++ K K+ +AG+ Sbjct: 248 ASFRSVFLPKQAVEIIKWFKQYDRNTEPDDFIFINQLKHVPFKMNTVALYLKNKSREAGI 307 Query: 283 NK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRI 339 ++ + H R + A+ G H + G + E Y ++ + ++I Sbjct: 308 DRKITTHFFRHTHISKLAEQGVPLHVIQKRVGHTKAETTREIYLHVT--KKMQEEMEKQI 365 Query: 340 SS 341 + Sbjct: 366 ND 367 >gi|259417091|ref|ZP_05741010.1| phage integrase [Silicibacter sp. TrichCH4B] gi|259345997|gb|EEW57811.1| phage integrase [Silicibacter sp. TrichCH4B] Length = 391 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 51/306 (16%), Positives = 95/306 (31%), Gaps = 21/306 (6%) Query: 49 SALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR-KSG 107 +A+ + +++ +L L + +S L + + S + I+ G Sbjct: 80 AAMVARGQDPQSDKIKKREAPSLVDLWGRFEES-DMKRLKPATIRDYRSLWKNILEPALG 138 Query: 108 DFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVA--INPCLSVERPK 165 I+ + S TP A + + + + A E+ NPC V R + Sbjct: 139 KRRVADISRADVDRLHRSMSDTPYQANRSIAVLSKMMTLAEIWEWRDQGTNPCRYVTRHR 198 Query: 166 RKTEGIRPWTKEDMQQFKSFWSEGSQPRLA-------FEFLLYSGLRCSDSCRAGVQHLQ 218 R + E++++ + + L F LL G R S+ + Sbjct: 199 EGKRE-RYLSTEELERLGAALTNLVDLGLLWPDMANLFRLLLLVGARRSEISNCEWNWID 257 Query: 219 --NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET----FFINNDKQKMNATQFSIW 272 I ++ KTG + L + + +L I F K S Sbjct: 258 WERRIIALPDSKTGAK-PLFLSNEAITVLQNQKITTRHQSSKFVFPGAKANKAIVNLSKP 316 Query: 273 FKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIR 330 +K +A + N H +R +A+I+ G + G Y AD Sbjct: 317 WKLICEEAELENLRIHDLRHTAASIAVGQGVALPIIGRLLGHTQTQTTARYAHVDADPAL 376 Query: 331 LGIKNS 336 Sbjct: 377 KAANAI 382 >gi|68536254|ref|YP_250959.1| integrase/recombinase [Corynebacterium jeikeium K411] gi|260578954|ref|ZP_05846857.1| tyrosine recombinase XerC [Corynebacterium jeikeium ATCC 43734] gi|68263853|emb|CAI37341.1| integrase/recombinase [Corynebacterium jeikeium K411] gi|258602928|gb|EEW16202.1| tyrosine recombinase XerC [Corynebacterium jeikeium ATCC 43734] Length = 301 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 39/269 (14%), Positives = 89/269 (33%), Gaps = 19/269 (7%) Query: 75 ISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFD-YRKITTKHIRSGVESRKHTPSS 132 + +Y + H + N+ ++ D + + + + + + +S Sbjct: 16 LDDYEQHLRHVVGRSENTIRAYRQNLDSALEGLERIEEFDLDRARDVLGWAVDNGASRAS 75 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW-TKEDMQQFKSFWSEGS- 190 + +SMR + + +V NP +++ PK + R + + EG Sbjct: 76 LSRLASSMRGFGAFLAHRGFVQANPVAALKAPKPQRTLPRVLRSDQASDMLNGLQPEGDA 135 Query: 191 ------QPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIIT------VE 236 + E L +G+R S+ V + N + + + T + V Sbjct: 136 ATPSAIRDWAMVELLYATGIRVSELTGCDVNDVDFSNRLLRVTGKGNKTRVVPFGGTVVA 195 Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA-GVNKSAHGVRKFSAT 295 + ++++ F+ ++++ Q G S HG+R +AT Sbjct: 196 ALEKWLEVREDMAKETPALFVGVRGKRIDPRQVRTVVNRVTQAGPGPRLSPHGLRHSAAT 255 Query: 296 ISADAGATAHELMATYGWKTVDQAETYTK 324 + GA + G + + YT Sbjct: 256 AILEGGADLRVVQELLGHANMSTTQIYTH 284 >gi|149372373|ref|ZP_01891561.1| integrase [unidentified eubacterium SCB49] gi|149354763|gb|EDM43326.1| integrase [unidentified eubacterium SCB49] Length = 295 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 34/263 (12%), Positives = 93/263 (35%), Gaps = 23/263 (8%) Query: 85 GSLAVNSRISFESYFDQIIR----KSGDFDYRKITTKHIRSGVE---SRKHTPSSAIQFL 137 + + ++ +++E + + + D + IRS + + + S + + Sbjct: 14 RNYSKHTIVAYERDLETFFKFLKTTFSEEDPVNVNYSMIRSWIVCLVEQGISNRSINRKV 73 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS-----QP 192 +S++ +K+ ++ + + P + K + P+ + ++ + + + + Sbjct: 74 SSLKTYYKFLLKTKQITATPLAKHKSLKVSKKIQVPFYETEIDEVITLLDHPTDFKTARD 133 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLA----- 246 +L +G+R ++ ++ + +K K + L +K + Sbjct: 134 KLIVALFYGTGMRRAELISLKLKDVDLAEGVVKVLGKRNKERLIPLLPSVLKSVDLYLKF 193 Query: 247 ---MTPIGKETFFINNDKQKMNATQFSIWFKAK--ATKAGVNKSAHGVRKFSATISADAG 301 + + + + N K+ T T V KS H +R AT + G Sbjct: 194 RKEIVVVDSDYLLLTNKGLKIYETLVYRLINGYFSTTSQKVKKSPHILRHSFATHLLNEG 253 Query: 302 ATAHELMATYGWKTVDQAETYTK 324 A + + G ++ + YT Sbjct: 254 ADLNSVKELLGHASLASTQVYTH 276 >gi|288869960|ref|ZP_06112412.2| putative integrase - phage associated [Clostridium hathewayi DSM 13479] gi|288868962|gb|EFD01261.1| putative integrase - phage associated [Clostridium hathewayi DSM 13479] Length = 424 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 50/284 (17%), Positives = 96/284 (33%), Gaps = 29/284 (10%) Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV--ESR 126 TT K L + + GS+ + + + + GD + + HI S + Sbjct: 110 TTFKELSELWLTNEKLGSVRDQTISTIKGQLSTVNSYIGDIRIKDLRMSHIESFRSYMIK 169 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + L+ ++ + ++AV+++ +A + ++R K + R T E+ F+ Sbjct: 170 SKKLAQYNLCLSRIKAIVRYAVQKDIMAKDITAGMKRVKIDKKPKRALTSEERLLFE-IT 228 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT----------------- 229 S R LLY+GLR ++ V+ + I KT Sbjct: 229 DLDSFERCFINLLLYTGLRKCEALALDVKDIDLKKNQIYVSKTLVASKKINTCLQEYTKT 288 Query: 230 -GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV------ 282 + + +P K+L G+ + + +T W K V Sbjct: 289 AAGLRQIPIPAPLAKILFEFIKGRSGILFPSKSGRYISTLDYKWEKILKKVQAVSSTPLS 348 Query: 283 -NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324 + + H R A+ AG + G + +TYT Sbjct: 349 DDITPHIFRHTYASDLYKAGVDIKQAQYLLGHDDIKTTLDTYTH 392 >gi|153948003|ref|YP_001401908.1| integrase [Yersinia pseudotuberculosis IP 31758] gi|152959498|gb|ABS46959.1| integrase [Yersinia pseudotuberculosis IP 31758] Length = 312 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 39/271 (14%), Positives = 86/271 (31%), Gaps = 19/271 (7%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH- 128 T+ + Y + L + + S D + I+TK I + + + Sbjct: 30 TVSDWVKTYTEVLSKRGLKSKTITGYNSRLDVVDEVFASRTIDSISTKDIATLLNDYTNN 89 Query: 129 -TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 +SA + + F+ AV + + NP + + PK + + R + + Sbjct: 90 GKAASAKLMRSFLTDFFREAVSEGIIYNNPVDATKNPKIEVKRARLSLDNFLSIRAAAAD 149 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE-------LPDG 240 + + + +G R D + ++++ ++ +KTG I + L Sbjct: 150 MPGWVVDSMDLAIVTGQRVGDVRKMKWSDIKDDKLFVEQEKTGMRIIIPFDVKLDTLLLS 209 Query: 241 FMKLLAM---TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK------SAHGVRK 291 ++A I ET ++ + + F A + H +R Sbjct: 210 LRDIIARCENRAIKGETIISSDKGESFADKTLTKRFAKARDLANITWEGINPPPFHEIR- 268 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETY 322 A+ + G K+ + Y Sbjct: 269 SLASRLYEKEMGKEFSQKILGHKSAQTTDKY 299 >gi|317125403|ref|YP_004099515.1| tyrosine recombinase XerC subunit [Intrasporangium calvum DSM 43043] gi|315589491|gb|ADU48788.1| tyrosine recombinase XerC subunit [Intrasporangium calvum DSM 43043] Length = 319 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 49/315 (15%), Positives = 105/315 (33%), Gaps = 29/315 (9%) Query: 51 LTGSTPKREYIN-SPRKKPTTLKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIR---K 105 +TG+ +E + P +P L+ ++SE+ + + ++ ++ S + + Sbjct: 1 MTGAGGTQEAVPTQPAPEPAGLEAVLSEFTRHLRSERGRSEHTTRAYVSDINHLFSFVVA 60 Query: 106 SGDFDYRKITTKHIRSGVESRKHT---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE 162 G D ++ +RS + ++ S+ + + R KWA R + +P L + Sbjct: 61 HGLSDLGELRLADLRSWLGAQADGGAARSTIARRAAAARTFLKWASRSGRIETDPSLRLV 120 Query: 163 RPKRKTEGIRPWTKEDMQQFKSFW--------SEGSQPRLAFEFLLYSGLRCSDSCRAGV 214 P+R + + + R E L SG+R + + Sbjct: 121 APRRSRTLPDVLKQREASAMLDVAAVRADDADPIHVRDRAVLELLYASGIRVGELVSLDL 180 Query: 215 QHLQNNIFSIKTQKTGT-----IITVELPDGFMKLLAM-----TPIGKETFFINNDKQKM 264 L +++ G V + LA P F+ ++ Sbjct: 181 DDLDLRERTVRVMGKGAKERVVPFGVPAASALQEWLAARRLLVGPRSGPALFLGRRGARV 240 Query: 265 NATQFSIWFKAKA--TKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 + Q + HG+R +AT + GA + G ++ + Y Sbjct: 241 DPRQVRSLVHEVLSHLPDAPDLGPHGLRHSAATHLLEGGADLRMVQEVLGHASLATTQIY 300 Query: 323 TK-GADRIRLGIKNS 336 T +R+R + + Sbjct: 301 THVSVERLRKSYEQA 315 >gi|315619082|gb|EFU99663.1| integrase [Escherichia coli 3431] Length = 231 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 39/216 (18%), Positives = 72/216 (33%), Gaps = 19/216 (8%) Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 +SA +++ +F+ A+ + +VA NP + K + R E ++ + + Sbjct: 10 KAASAKLIRSTLVDVFREAIAEGHVATNPVTATRTAKSEVRRSRLTANEYVEIYHAAEPL 69 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP---------- 238 RLA + + +G R D CR + +N I+ KTG + + L Sbjct: 70 PIWLRLAMDLAVVTGQRVGDLCRMKWSDINDNHLHIEQSKTGAKLAIPLTLTIDALNISL 129 Query: 239 -DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-----NKSAHGVRKF 292 D K ET + ++ S +F +G+ + H +R Sbjct: 130 ADTLQK--CREASSSETIIASKHYDPLSPKTVSKYFTKARNASGLSFDGNPPTFHELR-S 186 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 + G K+ A Y R Sbjct: 187 LSARLYRNQIGDKFAQRLLGHKSDSMAARYRDSRGR 222 >gi|261207379|ref|ZP_05922066.1| predicted protein [Enterococcus faecium TC 6] gi|289566793|ref|ZP_06447205.1| predicted protein [Enterococcus faecium D344SRF] gi|260078439|gb|EEW66143.1| predicted protein [Enterococcus faecium TC 6] gi|289161420|gb|EFD09308.1| predicted protein [Enterococcus faecium D344SRF] Length = 382 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 67/382 (17%), Positives = 136/382 (35%), Gaps = 58/382 (15%) Query: 14 ERTRHGKIIYYFRK--GHGRRI-RLPYPHESTFI--PAYMSALTGSTPKREYINSPRKKP 68 + ++G+ +YF+ G + Y + F +AL+ + + P Sbjct: 7 YKKKNGEKAWYFKTYLGIDPLTGKKKYTTKRGFRTQKEAKTALSRLELELQKTGMPTSTN 66 Query: 69 TTLK-----WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123 TT K WL Y+K+ S + ++I F + I G+ KI T + + V Sbjct: 67 TTFKEAAELWL-ESYKKTVKESSYS-RTKIIFNKH---IYPNFGNIKLSKINTAYCQKVV 121 Query: 124 ESRKHTPSSAIQ--FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW---TKED 178 +S F+ M +FK+A+ + NP L++ PK + E + TKE Sbjct: 122 NDWSEKGTSKQYPLFINYMNKVFKYAINIGLTSDNPTLNLIIPKPQIETEKKLKLYTKEQ 181 Query: 179 MQQFKSFWSEGS------QPRLAFEFLLYSGLRCSDSCRAGVQHL--------------- 217 ++ F + S+ + F L +SG R + ++ Sbjct: 182 LELFLNEVSQEQNPYFKNRDYTLFRLLAFSGCRIGEILALTWDNINFKTNEMAIKKTVAR 241 Query: 218 -------------QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM 264 ++N +KT + + L + F N++ Sbjct: 242 SDKYYISETPKTKKSNRIIYLDEKTIKQLKFWKLEQRKYLFQLGFTKANFLFTNDENNFT 301 Query: 265 NATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETY 322 + + +AG+ HG R A++ +AGA E+ G + +TY Sbjct: 302 INQAVAERYNIYRERAGLPYIGLHGFRHTHASMLYEAGADHKEVQERMGHANIKTTMDTY 361 Query: 323 TKGADRIRLGIKNSRRISSVVD 344 T + + + ++++++ ++ Sbjct: 362 THITNSKK--EETTQKLTNYIN 381 >gi|256752061|ref|ZP_05492929.1| tyrosine recombinase XerD [Thermoanaerobacter ethanolicus CCSD1] gi|289578310|ref|YP_003476937.1| tyrosine recombinase XerD [Thermoanaerobacter italicus Ab9] gi|256749071|gb|EEU62107.1| tyrosine recombinase XerD [Thermoanaerobacter ethanolicus CCSD1] gi|289528023|gb|ADD02375.1| tyrosine recombinase XerD [Thermoanaerobacter italicus Ab9] Length = 290 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 29/241 (12%), Positives = 88/241 (36%), Gaps = 13/241 (5%) Query: 89 VNSRISFESYFDQIIRK-SGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWA 147 + + + + + ++ +K T + ++ + + ++ + ++S++ + + Sbjct: 25 ESYNRDIKQFLNYLEEIGINYYNVKKSTILNYLYYLKKKGKSQATVSRNVSSLKAFYHYL 84 Query: 148 VRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAFEFLLYSG 203 ++ + +P + PK + + T E + S +G + + E L +G Sbjct: 85 FMKKKIEEDPTYMINTPKVEKKPPTALTVEQVDMLLSIDFGNDEKGLRDKALIELLYATG 144 Query: 204 LRCSDSCRAGVQHLQNNIFSIKTQKTGTII------TVELPDGFMKLLAMTPIGKETFFI 257 L+ S+ ++ + + + + + +E +++ G+ T F+ Sbjct: 145 LKVSEVISLKLEDVNLSYGYVVIRSNKERVIPIGSHAIEALKNYIEKGRKAKNGENTLFL 204 Query: 258 NNDKQKMNATQFSIWFKAKATKA--GVNKSAHGVRKFSATISADAGATAHELMATYGWKT 315 N +K+ + K G + + +R+ A GA + G++T Sbjct: 205 NLRGEKLTRQGCWKIIREYTDKINPGFPVTPNTLRQSFAQHMLQNGADIRAVQEMLGYQT 264 Query: 316 V 316 Sbjct: 265 D 265 >gi|210610949|ref|ZP_03288674.1| hypothetical protein CLONEX_00864 [Clostridium nexile DSM 1787] gi|210152249|gb|EEA83256.1| hypothetical protein CLONEX_00864 [Clostridium nexile DSM 1787] Length = 429 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 52/310 (16%), Positives = 103/310 (33%), Gaps = 40/310 (12%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH 128 T + L Y + L ++ ++ ++ I+ G +I +R Sbjct: 70 TFQNLYEIYMEDTA-ARLKQSTLLTKKAVLQTHILPFFGSKPINEIKASDVRRWQAKLMS 128 Query: 129 TPSSA-----IQFLTSMRVLFKWAVRQEYVAINPCLSVERP-KRKTEGIRPWTKEDMQQF 182 +P++ + T + + +A R + NPC K K E + WT ++ F Sbjct: 129 SPNNYSQTYLKKINTELNSIINYAKRFYDLNTNPCGKAGTIGKAKAEEMDYWTYDEYIAF 188 Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT------------- 229 + + S + FE L ++G+R + + + +I +T Sbjct: 189 REGVKDKSLSYICFEVLYWTGMREGELLALSPADIDLDNKTISINRTYQRIEGKDVFTSP 248 Query: 230 ---GTIITVELPDGFMKLL------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA 280 + + +PD + L P E F + + S Sbjct: 249 KTRKSKRKIPIPDFLCQELSDYIQSRYMPDADERLF------PVTKSYLSHEMIRGCKNT 302 Query: 281 GVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRR 338 V K H +R A++ + G A L G + V TY+ + + +S Sbjct: 303 DVKKIRIHDIRHSHASLLINQGCDALMLADRLGHEKVSTTLNTYSHLFPHKQQELVHS-- 360 Query: 339 ISSVVDSDDP 348 + S+ +D P Sbjct: 361 LESLQATDSP 370 >gi|167465306|ref|ZP_02330395.1| DNA integration/recombination/invertion protein [Paenibacillus larvae subsp. larvae BRL-230010] Length = 411 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 47/336 (13%), Positives = 109/336 (32%), Gaps = 60/336 (17%) Query: 66 KKPTTLKWLISE----YRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHI- 119 + TL+ I S +L+ + ++ + + +II G + I T HI Sbjct: 72 PQKMTLRQFIESEWDPKYASKT-ENLSPLTYQTYMHFIESRIIPVFGHKNLEDIRTLHIV 130 Query: 120 -----------RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168 R +P + ++ +F A + + NP + V++PK + Sbjct: 131 TFINDLSKPGVRKDRRDDTLSPGTIQYIHRVLKNIFNRATEWQLIKTNPIVGVKKPKVEQ 190 Query: 169 EGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS---GLRCSDSCRAGVQHLQNNIFSIK 225 ++ + + + +PR F+L S G R + + + ++ Sbjct: 191 TEFDF--YDEDEAREVIAALNKEPRRWRLFILGSMVGGFRRGELLALEWADVDFDNMTLS 248 Query: 226 TQK-----------------TGTIITVELPDGFMKLLAM----------------TPIGK 252 K + V++P+ +M+ L + + Sbjct: 249 INKSISLTVDGRAVEKDPKSKSSKRVVDMPEWYMQELKVHEREWKKEKLFMGDKWLGGDR 308 Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATY 311 + F + T + W+++ ++ + H +R SAT+ +AGA + Sbjct: 309 QYVFHAGYGKPFFHTTPTKWWRSFISRNKLKYIRLHDLRHSSATLLIEAGAPMKAIQKRL 368 Query: 312 GWKT-VDQAETYTKGADRIRLGIKNSRRISSVVDSD 346 G A+ Y ++ + + ++ Sbjct: 369 GHSKHQTTADIYAHVT--KKVSRDTAEKFDKFAPNN 402 >gi|188585853|ref|YP_001917398.1| integrase family protein [Natranaerobius thermophilus JW/NM-WN-LF] gi|179350540|gb|ACB84810.1| integrase family protein [Natranaerobius thermophilus JW/NM-WN-LF] Length = 305 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 42/284 (14%), Positives = 84/284 (29%), Gaps = 33/284 (11%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDY---RKITTKHIRSGVES-- 125 LK+ I ++ + + +L + + + + + + +T HI+S + Sbjct: 3 LKFAIQDFIEDREFKNLTQKTISGYSATLKEFQEFISEQEVVNANDVTQSHIKSYLLHCK 62 Query: 126 --RKHTPSSAIQFLTSMRVLFKWAVRQEYV--AINPCLSVERPKRKTEGIRPWTKEDMQQ 181 + + P+S L ++++ F + E + NP + K + I + ++Q Sbjct: 63 KNKNNNPTSINHKLHNLKIFFNYLQDIEVISEKQNPAKKINYVKEDIK-IEVFNDYQIKQ 121 Query: 182 FKSFWSE---------GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTG 230 ++ + FLL +G R + + NN K Sbjct: 122 MLDYYRRIKRREKGFYAYRNYTIIVFLLGTGSRLGELINLRWDDIDFINNTIVF-YGKKR 180 Query: 231 TIITVELPDGFMKLLAMTPI--------GKETFFINNDKQKMNATQFSIWFKAKATK--- 279 ++ + + K L E F N +K+ FK Sbjct: 181 EYSSIPMTEKLKKELMEYKTYCEQTFESLSEYVFTNRKNEKLTDNAVKCIFKRLKKVMNF 240 Query: 280 AGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 V S H R A L K + Y Sbjct: 241 KNVRVSCHTFRHTFAVNMIKNNCDIFTLQKMLRHKDLSMCRRYV 284 >gi|77359067|ref|YP_338642.1| site-specific recombinase [Pseudoalteromonas haloplanktis TAC125] gi|76873978|emb|CAI85199.1| site-specific recombinase [Pseudoalteromonas haloplanktis TAC125] Length = 315 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 39/268 (14%), Positives = 94/268 (35%), Gaps = 30/268 (11%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134 +++Y + +L YF ++ F + + + S++ + + Sbjct: 38 VNQYVSQLGFAAL----------YFSKLCDDW--FSVQGEHIRRYSMALRSKQLSGRTIS 85 Query: 135 QFLTSMRVLFKWAVRQEYVA----INPCLSVERPKRKTEGIRPWTKEDMQQFKSF---WS 187 L+ +R L+K+ + NP + ++ PK + + M + Sbjct: 86 LKLSCIRSLYKFLKAKNIAKQAHYHNPAVGIKGPKFAKPLPKNLDVDQMARLLEIPDDEP 145 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVEL----PDGFM 242 + + E + SGLR S+ A +Q + I + G + + + Sbjct: 146 LAIRDKAMMELMYSSGLRISELVGANLQDISAANGEILVRGKGNKERLIPVGSKALNALK 205 Query: 243 KLLAMTP----IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATI 296 K L + P + F+++ K +++ Q + + K G++ H +R A+ Sbjct: 206 KWLIIRPQFANPDEVAVFLSSKKNRISVRQVRLRMQEWGIKQGISSQVHPHKLRHSFASH 265 Query: 297 SADAGATAHELMATYGWKTVDQAETYTK 324 ++ + G ++ + YT Sbjct: 266 ILESSGDLRAVQELLGHSSLSATQVYTH 293 >gi|121601884|ref|YP_988378.1| tyrosine recombinase XerD [Bartonella bacilliformis KC583] gi|120614061|gb|ABM44662.1| tyrosine recombinase XerD [Bartonella bacilliformis KC583] Length = 312 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 40/284 (14%), Positives = 96/284 (33%), Gaps = 33/284 (11%) Query: 74 LISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH-----IRSGVESRK 127 +I + + + + ++ +++ K + + + S + Sbjct: 6 IIDRFLEMMSAERGASAHTLAAYQHDLQWAQDKLSSCSVSLFSARKEDLISLLSLMHKAG 65 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 +S + L+++R +++ ++ +P ++ P++ + +++ + + F Sbjct: 66 FAATSQARRLSTLRQFYQFLYAEKLREDDPSGDIDAPRQGHPLPKIMSEDVVTKLLDFAQ 125 Query: 188 EGS--------------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII 233 + + ++ E L +GLR S+ VQ ++ I + G Sbjct: 126 LETNQAEYGSKNYFRALRLQVLIEMLYATGLRISELVSLPVQTVRGKEQYILVRGKGGKE 185 Query: 234 TVELPDG-----FMKLLAMTPIGKET----FFINNDKQKMNATQFSIW-FKAKATKAGVN 283 + L + L + GK+ F + A QF K A +AG+ Sbjct: 186 RMVLLSAKARQVLSEWLVLRDQGKDATSPYLFPAHSSTGYIARQFIARGLKDLAKRAGIR 245 Query: 284 K---SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 S H +R A+ GA + G + + YT Sbjct: 246 GDCFSPHVLRHAFASHLLQNGADLRAVQHLLGHCDISTTQIYTH 289 >gi|297570097|ref|YP_003691441.1| integrase family protein [Desulfurivibrio alkaliphilus AHT2] gi|296926012|gb|ADH86822.1| integrase family protein [Desulfurivibrio alkaliphilus AHT2] Length = 409 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 47/296 (15%), Positives = 104/296 (35%), Gaps = 21/296 (7%) Query: 45 PAYMSAL----TGSTPKREYINSPRKKPTT--LKWLISEY--RKSAHWGSLAVNSRISFE 96 Y +A G+ P ++ ++ T L L+ EY + + + + Sbjct: 66 RKYRAAFDLFEQGNDPVAMHLEKKEERRRTPFLSDLVDEYINKHAMRFKRSWAKDQAILN 125 Query: 97 SYFDQIIRKSGDFDYRKITTKHIRSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQEYVA 154 ++ G I+ + + +E + +P A +R +F +AV +E + Sbjct: 126 R---DVVPAWGQRKAVDISKRDVILLLEKIVDRGSPGMANNCFQIIRKMFNFAVDREILE 182 Query: 155 INPCLSVERPKRKTEGIRPWTKEDMQQF---KSFWSEGSQPRLAFEFLLYSGLRCSDSCR 211 I+PC V+ P K R ++E+++ + + A + +L + R + Sbjct: 183 ISPCTGVKMPAPKMARDRVLSEEEIRVLWSGLERAKISHEVQRAIKLILVTAQRPGEVMG 242 Query: 212 AGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF 269 ++ ++I K G V L D ++L+ G + + Sbjct: 243 MDFSEIEGRWWTIPADRAKNGKAHRVYLTDTALELIGENTGGFVFPSPRHRENPRPIGSN 302 Query: 270 SIWFKAKATKAGVNK---SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 ++ + K + + H +R+ +AT A+ G + A + Y Sbjct: 303 AMTVAHRRNKDKIPLEDFTPHDLRRTAATFMAEMGTMDEVIDAILNHSKMGVIRVY 358 >gi|255326180|ref|ZP_05367266.1| tyrosine recombinase XerD [Rothia mucilaginosa ATCC 25296] gi|255296634|gb|EET75965.1| tyrosine recombinase XerD [Rothia mucilaginosa ATCC 25296] Length = 438 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 44/227 (19%), Positives = 76/227 (33%), Gaps = 31/227 (13%) Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 P+S + + ++R + V V +P V PK + + ED+Q+ + Sbjct: 191 GPNSIARTMAAVRGAHAFWVSALIVPTDPAAPVTPPKNVKRLPKAVSVEDIQRLLAVPDR 250 Query: 189 ----GSQPRLAFEFLLYSGLRCSDSCRAGVQHL---------QNNIFSIKT-----QKTG 230 G + R EFL +G R S+ A + + N ++ K Sbjct: 251 ETATGLRNRAILEFLYATGARVSEMLNADIDDVHFEGTLTDEDGNQITLPGYVRLFGKGN 310 Query: 231 TIITVELPDGFMKLL-----AMTPI------GKETFFINNDKQKMNATQFSIWFKAKATK 279 V + K + P G F+N ++ + K A Sbjct: 311 KERLVPIGSYAQKAIQDYLVRARPSFVAHGKGTSALFVNGRGGRLGRQGAWLILKEAAEA 370 Query: 280 AGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 AG+ + S H +R AT GA + G ++ + YTK Sbjct: 371 AGLSSDFSPHSMRHSFATHLLQGGADIRVVQELLGHASIATTQVYTK 417 >gi|299137336|ref|ZP_07030518.1| integrase family protein [Acidobacterium sp. MP5ACTX8] gi|298600741|gb|EFI56897.1| integrase family protein [Acidobacterium sp. MP5ACTX8] Length = 320 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 50/283 (17%), Positives = 91/283 (32%), Gaps = 44/283 (15%) Query: 85 GSLAVNSRISFESYFDQIIRKSG-----DFDYRKITTKHIRSGVE---SRKHTPSSAIQF 136 + ++ ++ G D D R + HIR+ + + T +SA + Sbjct: 21 RGASEHTLRAYSREVRGFADFLGELLGEDADIRSVEHTHIRAYLAVLYDKGLTKASAARA 80 Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS------ 190 L ++R FKW + +V NP V PK R E++ + + S G+ Sbjct: 81 LAAVRSWFKWLAKSGFVEANPASLVSTPKLPKHLPRVPGMEELNRVLNSMSAGTKGEDGE 140 Query: 191 -------QPRLAFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQKTGTIITVELPDGF 241 + R+ FE L G+R S+ ++ H ++ + K V L D Sbjct: 141 EAATWPERDRVIFELLYGCGIRNSELVGLNLESIHWHDDAIRV-FGKGKKERLVPLGDEA 199 Query: 242 MKLLAMTPIGKETFFINNDKQKM------------------NATQFSIWFKAKATKAGVN 283 + ++ K K+ K A G+ Sbjct: 200 AAAIRAYLPQRQARLEAAGKAKLVHDGALLMNLRMRGACRLTTRSVGRIVKRIALSRGLA 259 Query: 284 KS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R T + GA + G + + + YT+ Sbjct: 260 ADVHPHTLRHAFGTHMLEEGADLRAIQEMLGHERLSTTQRYTQ 302 >gi|330467056|ref|YP_004404799.1| site-specific tyrosine recombinase XerD [Verrucosispora maris AB-18-032] gi|328810027|gb|AEB44199.1| site-specific tyrosine recombinase XerD [Verrucosispora maris AB-18-032] Length = 290 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 52/277 (18%), Positives = 89/277 (32%), Gaps = 36/277 (12%) Query: 90 NSRISFESYFDQIIR----KSGDFDYRKITTKHIRSGVESRKHTP---SSAIQFLTSMRV 142 R + Y + + +I R H P SSA + +++R Sbjct: 2 AYRRDLDRYLNSLAAAGVSDLAAVPAGEIERHLARLRAGDDGHPPLAASSAARAASAVRG 61 Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----------SEGSQP 192 L ++A+R+ A +P V P R + +D+ + + Sbjct: 62 LHRFALREGLAAADPSRDVRPPTPPRRLPRALSLDDVVRLLDAAGPVQAAGDTAPLALRD 121 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLLAM---- 247 R EFL +G R S++ V + + K G V + M+ L Sbjct: 122 RALLEFLYGTGARISETVGLAVDDVDLTDAVVQLRGKGGRDRLVPIGGYAMQALGAYLVR 181 Query: 248 -------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK------SAHGVRKFSA 294 G F+N+ + + + A +A + S H +R A Sbjct: 182 ARPGLVAAGRGTPRVFLNSRGGPLTRQGAWMILRRAAERAALPVDGPQAVSPHTLRHSYA 241 Query: 295 TISADAGATAHELMATYGWKTVDQAETYT-KGADRIR 330 T D GA + G +V + YT DR+R Sbjct: 242 THLLDGGADVRVVQELLGHASVTTTQVYTLVTVDRLR 278 >gi|296454352|ref|YP_003661495.1| phage integrase family protein [Bifidobacterium longum subsp. longum JDM301] gi|296183783|gb|ADH00665.1| phage integrase family protein [Bifidobacterium longum subsp. longum JDM301] Length = 353 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 51/325 (15%), Positives = 91/325 (28%), Gaps = 78/325 (24%) Query: 76 SEYRKSAHWGSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIRSGV--ESRKHTP 130 Y KS L+ N+ ++ + + G D +IT +RS + ESR H Sbjct: 14 VSYLKSNR--GLSANTLKAYRADLTACLHLFELRGVTDLNEITLDDLRSWMAVESRDHAR 71 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG- 189 SS + ++R F WA +P ++ P + T+ +Q Sbjct: 72 SSMARKTVAVRGFFAWAYEHGVTTTDPAATLMTPSIPSTLPAVLTESQAEQLLDVAEHAV 131 Query: 190 ---------------------------------------------------SQPRLAFEF 198 + E Sbjct: 132 ATNQYKDDGGAAAASGSGSGKAADKSADIVNRSEAPARADKRDNARATAESQRNAAILEL 191 Query: 199 LLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKL----------LA 246 L +G+R ++ + + N + + + L LA Sbjct: 192 LYATGIRVAELVSMDIADIDFSNRTIKVTGKGNKQRVVPFGLPAQRALETWLEQGRPVLA 251 Query: 247 MTPIGK------ETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISAD 299 T F+ +++ A +AGV + S H +R +AT D Sbjct: 252 RTATDAVKSRAANALFLGARGGRIDQRIARDIVHRAAREAGVPDISPHALRHSAATHMLD 311 Query: 300 AGATAHELMATYGWKTVDQAETYTK 324 GA E+ G ++ + YT Sbjct: 312 GGADLREVQEMLGHSSLKTTQRYTH 336 >gi|293373142|ref|ZP_06619506.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] gi|292631913|gb|EFF50527.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] Length = 386 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 49/261 (18%), Positives = 94/261 (36%), Gaps = 18/261 (6%) Query: 92 RISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFL----TSMRVLFKWA 147 R+ + + + K R+ + + + A L +++ +F A Sbjct: 122 RVDKKDILLKDVSKDEICGLFDYMRNKYRNKRQIKTNGGRLADYTLLLFEETVKAIFNKA 181 Query: 148 VRQEYVAINPC---LSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR---LAFEFLLY 201 +R+ V NP +ER + T E++ +F + +E R LAF Sbjct: 182 MREGLVKFNPVHSLNKLERFHAPDKHREYLTPEELTRFLAVEAECENERTVQLAFGLSSM 241 Query: 202 SGLRCSDSCRAGVQHLQ--NNI--FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFI 257 + LR D ++ + + SI +KT + L + LL + Sbjct: 242 TALRLGDMQHLRWCDIKMIDGVPTISIIQRKTKRPAIIPLNEMAQSLLPPRTDDNPESLV 301 Query: 258 NNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKT 315 + +K + S + + KAG+ K H R +A+++ AGA + G + Sbjct: 302 FHLVKK--SDNVSKYVRRLKEKAGIEKDLTYHCSRHTTASLAISAGADISAVKDVLGHGS 359 Query: 316 VDQAETYTKGADRIRLGIKNS 336 + E Y K A ++ N Sbjct: 360 ITSTEVYAKVALEKKIEAVNL 380 >gi|227547623|ref|ZP_03977672.1| tyrosine recombinase XerC [Bifidobacterium longum subsp. infantis ATCC 55813] gi|227211878|gb|EEI79774.1| tyrosine recombinase XerC [Bifidobacterium longum subsp. infantis ATCC 55813] Length = 355 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 52/327 (15%), Positives = 95/327 (29%), Gaps = 80/327 (24%) Query: 76 SEYRKSAHWGSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIRSGV--ESRKHTP 130 Y KS L+VN+ ++ + + G D +IT +RS + ESR H Sbjct: 14 VSYLKSNR--GLSVNTLKAYRADLTACLHLFELRGVTDLNEITLDDLRSWMAVESRDHAR 71 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK--SFWSE 188 SS + ++R F WA +P ++ P + T+ +Q + + Sbjct: 72 SSMARKTVAVRGFFAWAYEHGLTTTDPAATLMTPSIPSTLPAVLTESQAEQLLDVAEHAV 131 Query: 189 GS----------------------------------------------------QPRLAF 196 + + Sbjct: 132 ATNQYKDDGGAAAASGSGKAAGKTADKSADTVNRSEAPARADKRDNARVTAESQRNAAIL 191 Query: 197 EFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKL---------- 244 E L +G+R ++ + + N + + + L Sbjct: 192 ELLYATGIRVAELVSMDIADIDFSNRTIKVTGKGNKQRVVPFGLPAQRALETWLEQGRPV 251 Query: 245 LAMTPIGK------ETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATIS 297 LA T F+ +++ A +AGV + S H +R +AT Sbjct: 252 LARTATDAVKSRAANALFLGARGGRIDQRIARDIVHRAAREAGVPDISPHALRHSAATHI 311 Query: 298 ADAGATAHELMATYGWKTVDQAETYTK 324 D GA E+ G ++ + YT Sbjct: 312 LDGGADLREVQEMLGHSSLKTTQRYTH 338 >gi|323339878|ref|ZP_08080147.1| tyrosine recombinase XerC [Lactobacillus ruminis ATCC 25644] gi|323092751|gb|EFZ35354.1| tyrosine recombinase XerC [Lactobacillus ruminis ATCC 25644] Length = 302 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 44/280 (15%), Positives = 92/280 (32%), Gaps = 30/280 (10%) Query: 73 WL--ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD-------FDYRKITTKHIRSGV 123 WL +Y K + + S+ ++ R + D I S + Sbjct: 8 WLEQFKQYLKVER--QYSEATITSYFEDLNEFCRFLDESGGLKSFKDINNIDVHAYMSWL 65 Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ-F 182 R+ ++ + ++S+R +++ VR + +P V + + + +M F Sbjct: 66 YDRELKTTTVSRKISSLRAFYRFLVRNDKADQDPFAYVSLRRHPRRLPHFFYEREMNALF 125 Query: 183 KSFW---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELP 238 ++ + E L +G+R S+ +Q + + SI K V+ Sbjct: 126 QAVCGDDPLTVRDNALLENLYSTGMRVSECVGLKMQDIDFPMRSILVHGKGKKDRYVQFG 185 Query: 239 DGFMKLLAM------TPI------GKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS- 285 L TP+ + F+N+ ++ S K+ + + Sbjct: 186 SYLDNALKAYFEKMRTPVMEKYQKKHDFVFVNHYGDQLTPAGVSYILDKIVEKSSLTTTI 245 Query: 286 -AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R AT GA + G ++ + YT Sbjct: 246 HPHELRHTFATHMLANGADLRSVQELLGHSSISTTQIYTH 285 >gi|113866150|ref|YP_724639.1| site-specific tyrosine recombinase XerC [Ralstonia eutropha H16] gi|113524926|emb|CAJ91271.1| Site-specific recombinase XerC/Integrase [Ralstonia eutropha H16] Length = 359 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 53/320 (16%), Positives = 101/320 (31%), Gaps = 55/320 (17%) Query: 49 SALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHW----GSLAVNSRISFESYFDQI-- 102 ++ P +P L++ Y W LA ++ S+ + Sbjct: 8 RSVVADIAPASDGPPPAPEP-----LVTRYL---DWLRGSRKLAEHTLTSYSRDLRVLQG 59 Query: 103 --IRKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFLTSMRVLFKWAVRQEY-VAIN 156 R + + T HIR+ +S + L++ R F+WA R + V +N Sbjct: 60 HAARYAPGVALLALQTHHIRNFAARLHGAGLVGTSIARTLSAWRGFFQWAARHGHGVTVN 119 Query: 157 PCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS-----QPRLAFEFLLYSGLRCSDSCR 211 P V P+ + + E + G+ + + E SGLR S+ + Sbjct: 120 PVDGVRAPRSGHALPKALSVEHAVALVA-HPAGTDAQALRDQAVHELFYSSGLRLSELVQ 178 Query: 212 A-------------GVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM----------- 247 G L ++ T K +V + ++ L Sbjct: 179 LDLRYADADGYRSSGWLDLAGAEVTV-TGKGSRQRSVPVGSKAIEALRAWLAVRDTLLRP 237 Query: 248 --TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGAT 303 P F+ ++++ + K +A +AGV H +R AT + Sbjct: 238 GALPEDAHALFLGPRGRRLSMRTVQLRLKQQALRAGVPADVHPHMLRHSFATHVLQSSGD 297 Query: 304 AHELMATYGWKTVDQAETYT 323 + G ++ + YT Sbjct: 298 LRAVQEMLGHASISTTQVYT 317 >gi|331087780|ref|ZP_08336706.1| hypothetical protein HMPREF1025_00289 [Lachnospiraceae bacterium 3_1_46FAA] gi|330409761|gb|EGG89197.1| hypothetical protein HMPREF1025_00289 [Lachnospiraceae bacterium 3_1_46FAA] Length = 400 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 59/369 (15%), Positives = 115/369 (31%), Gaps = 68/369 (18%) Query: 19 GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEY 78 G+ I F G+R L + A+ + E+ + + TL + Sbjct: 20 GRYIARFTSKTGKRKTLYDFKLNELKRKLREAVY----EDEHGLNGNGESITLNAWYVTW 75 Query: 79 RKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTP---SSAI 134 + ++ + + SY++ ++ G + I T H++ + + + Sbjct: 76 TELYKKKTVKMTTIYKNHSYYNSRVKNSIGKMYLQDIKTYHVQKFLNDLIDSGLAHGTVS 135 Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194 + + AV EY+ NPC+ VE PK + R TKE+ ++F +F S Sbjct: 136 NIRFMLSDMLDKAVLSEYIRKNPCIGVEMPKEVKKERRVLTKEEQEKFFTFASSYIHI-N 194 Query: 195 AFEFLLYSGLRCSDSCRAGVQH----------------------LQNNIFSIKTQKT-GT 231 +F + +G R + + ++ + F T KT + Sbjct: 195 VLKFAVTTGCRIGEVLGLKWEDCDFEKREIIINKTIHYSKASSPVEGSKFFYTTAKTISS 254 Query: 232 IITVELPDGFMKLLAMTPIGK------------------ETFFINNDKQKMNATQFSIWF 273 + + D ++L I + F +D + + Sbjct: 255 NRVIPMTDEVYEILQNQKIKQTEQKMWKRSIWKQHKEFQNLVFTCSDGSPVYYYNVNSAI 314 Query: 274 KAKATK--------AGVNK---------SAHGVRKFSATISADAGATAHELMATYGWKTV 316 K K A K + H +R AT + G + G T+ Sbjct: 315 KDYVAKINVIEIELAKEEKREPKIFELFTCHTLRHTYATRCYENGVDQQVVQKLLGHSTL 374 Query: 317 DQ-AETYTK 324 + YT Sbjct: 375 AMTTDLYTH 383 >gi|295110676|emb|CBL24629.1| Site-specific recombinase XerD [Ruminococcus obeum A2-162] Length = 400 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 59/369 (15%), Positives = 115/369 (31%), Gaps = 68/369 (18%) Query: 19 GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEY 78 G+ I F G+R L + A+ + E+ + + TL + Sbjct: 20 GRYIARFTSKTGKRKTLYDFKLNELKRKLREAVY----EDEHGLNGNGESITLNAWYVTW 75 Query: 79 RKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTP---SSAI 134 + ++ + + SY++ ++ G + I T H++ + + + Sbjct: 76 TELYKKKTVKMTTIYKNHSYYNSRVKNSIGKMYLQDIKTYHVQKFLNDLIDSGLAHGTVS 135 Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194 + + AV EY+ NPC+ VE PK + R TKE+ ++F +F S Sbjct: 136 NIRFMLSDMLDKAVLSEYIRKNPCIGVEMPKEVKKERRVLTKEEQEKFFTFASSYIHI-N 194 Query: 195 AFEFLLYSGLRCSDSCRAGVQH----------------------LQNNIFSIKTQKT-GT 231 +F + +G R + + ++ + F T KT + Sbjct: 195 VLKFAVTTGCRIGEVLGLKWEDCDFGKREITINKTIHYSKASSPVEGSKFFYTTAKTISS 254 Query: 232 IITVELPDGFMKLLAMTPIGK------------------ETFFINNDKQKMNATQFSIWF 273 + + D ++L I + F +D + + Sbjct: 255 NRVIPMTDEVYEILQNQKIKQTEQKMWKRSIWRQHKEFQNLVFTCSDGSPVYYYNVNSAI 314 Query: 274 KAKATK--------AGVNK---------SAHGVRKFSATISADAGATAHELMATYGWKTV 316 K K A K + H +R AT + G + G T+ Sbjct: 315 KDYVAKINVIEIELAKEEKREPKIFELFTCHTLRHTYATRCYENGVDQQVVQKLLGHSTL 374 Query: 317 DQ-AETYTK 324 + YT Sbjct: 375 AMTTDLYTH 383 >gi|289450299|ref|YP_003475200.1| site-specific tyrosine recombinase XerC [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289184846|gb|ADC91271.1| site-specific tyrosine recombinase XerC [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 366 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 46/260 (17%), Positives = 88/260 (33%), Gaps = 32/260 (12%) Query: 94 SFESY-FDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLT--SMRVLFKWA-VR 149 F + D I D + + + G + + S+A + ++R FK+ + Sbjct: 89 DFRAIPLDDITEA--DLNQIDLKILYSFIGWLANEKKASTANRSRKIATLRSFFKYHHTK 146 Query: 150 QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG-----SQPRLAFEFLLYSGL 204 + NP +E PK+ + R E+ +Q ++ + L GL Sbjct: 147 TRLIKENPAAELESPKQLKKQPRYLEVEESKQLLQTVAQANSNFSQRDYCILTLFLNCGL 206 Query: 205 RCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM-TPIGKE---------- 253 R ++ C + + + + K G TV L + L P K+ Sbjct: 207 RLAELCGINLGDIGEDTLRV-LGKGGKERTVYLNGACIAALNAYLPERKQQKNSFNSAEK 265 Query: 254 -----TFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAG-ATA 304 FI+ +++ + + AG++ + H +R +AT+ G Sbjct: 266 KQAETPLFISRQGNRISHPAVQLLVRKYIILAGLDPHKYTPHKLRHTAATLMYKYGHVDI 325 Query: 305 HELMATYGWKTVDQAETYTK 324 L G +V E YT Sbjct: 326 RMLQQILGHSSVATTEIYTH 345 >gi|325106888|ref|YP_004267956.1| tyrosine recombinase XerD subunit [Planctomyces brasiliensis DSM 5305] gi|324967156|gb|ADY57934.1| tyrosine recombinase XerD subunit [Planctomyces brasiliensis DSM 5305] Length = 315 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 38/262 (14%), Positives = 82/262 (31%), Gaps = 23/262 (8%) Query: 86 SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH------TPSSAIQFLTS 139 +A NS ++ +Q + + + ++ KH S+ + L + Sbjct: 37 GMAENSVKAYIRDLEQFLDWLKKKHWHDVRELTLQQLTAYLKHLHDEGLKASTVARKLVA 96 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRLA 195 ++ F++ V + + + + PK + + E + + S + R Sbjct: 97 LKTFFRFLVLEGVITDSKAELLNSPKLWQYLPKVLSPEKVDALLTAPSWEDEFPHRDRAI 156 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------ELPDGFMKLLA 246 L +G R S+ + ++ + K + G + L + Sbjct: 157 LSVLYATGCRASEVTDLTLDQVRLDEGYCKCRGKGNKERIVSLNPVAIAALETYLQRERP 216 Query: 247 MTPIGKE--TFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302 E F++ + ++ K A + G + S H +R AT GA Sbjct: 217 ALAARHEQTHLFLSRTGRPLDRLTIWRIVKRYAARIGCSAQVSPHTLRHSFATHMLAGGA 276 Query: 303 TAHELMATYGWKTVDQAETYTK 324 L G + + YT Sbjct: 277 EIRALQEMLGHANIRTTQVYTH 298 >gi|229115620|ref|ZP_04245025.1| Integrase/recombinase [Bacillus cereus Rock1-3] gi|228667762|gb|EEL23199.1| Integrase/recombinase [Bacillus cereus Rock1-3] Length = 305 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 42/283 (14%), Positives = 97/283 (34%), Gaps = 29/283 (10%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR----KSGDFDYRKITTKHIRSGV--- 123 L+++I +Y + LA + S+ ++ R + + IT I+ + Sbjct: 4 LRFMIKDYLEDKELSGLAPRTIQSYGDTLNEFSRWLVAEKEIINIEDITPPVIKGYLLYC 63 Query: 124 -ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVA--INPCLSVERPKRKTEGIRPWTKEDMQ 180 + R +T + L ++ F++ ++ + NP ++ P + + I+ ++ E ++ Sbjct: 64 SKERGNTVVTRNGKLQHLKTFFRYLEDEDIIEIRSNPTNKIK-PAKTDKTIKVYSDEQIK 122 Query: 181 QFKSFWS-----EGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTG 230 Q ++ E + + L +G+R + + +I K Sbjct: 123 QMLRYYRRMRSRENTLYSYRGHTVIVVLAGTGIRLGELVSMRWDSVDLLNKTITIFGKNR 182 Query: 231 TIITVELPDGFMKLLAMTPIGKE--------TFFINNDKQKMNATQFSIWFKAKATKAGV 282 ++ L D + L + E F ++ + + F + + G Sbjct: 183 KSLSTPLTDKVARELYEWRLFCEKYYIKLPAHVFNDHRGNPLTVNAVKLMFTRLSVRMGF 242 Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 +AH R A+ AG + L + E Y Sbjct: 243 KTTAHMFRHTYASNCLRAGMDIYTLSKLMHHSQIRTTEVYLHA 285 >gi|311113476|ref|YP_003984698.1| tyrosine recombinase XerC [Rothia dentocariosa ATCC 17931] gi|310944970|gb|ADP41264.1| tyrosine recombinase XerC [Rothia dentocariosa ATCC 17931] Length = 356 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 53/293 (18%), Positives = 91/293 (31%), Gaps = 34/293 (11%) Query: 76 SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF---DYRKITTKHIRSGVESRKHTPSS 132 Y + + + + S+ S G + + IR + S ++ Sbjct: 62 ERYLRYEKYR--SEETIRSYISDLCGFFGFIGRRGISRVEDVNLQLIREWLGSMHLKQNA 119 Query: 133 ---AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 + +++R F WA +E + NP + PKR ++E M + Sbjct: 120 KTTVARRGSTLRTFFSWAHEEELITENPTRGMSTPKRDRHLPAVLSQEQMSSVLDTVALR 179 Query: 190 SQP--------RLA--FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELP 238 + RL E L SG+R S+ + + +++ K V L Sbjct: 180 CRENPQDIRMLRLWAVLEVLYSSGMRISELTGLNLSSVDRANKTVRVIGKGNKERVVPLG 239 Query: 239 DGFMK------------LLAMTPIGKETFFINNDKQKMNATQFSIWF-KAKATKAGVNKS 285 MK +A FI ++ N Q + T S Sbjct: 240 TPAMKVLSQWVKIGRPYWIAKGSRDVTALFIGPRGKRANPRQIREDISRILRTLENTEVS 299 Query: 286 -AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 AH +R +AT D GA + G ++ + YT RL R Sbjct: 300 GAHVLRHSAATHLVDGGADIRTVQELLGHASLSTTQIYTH-VSMKRLADTYIR 351 >gi|229144736|ref|ZP_04273135.1| Integrase/recombinase [Bacillus cereus BDRD-ST24] gi|228638697|gb|EEK95128.1| Integrase/recombinase [Bacillus cereus BDRD-ST24] Length = 305 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 42/283 (14%), Positives = 98/283 (34%), Gaps = 29/283 (10%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR----KSGDFDYRKITTKHIRSGV--- 123 L+++I +Y + LA + S+ ++ R + + IT + I+ + Sbjct: 4 LRFMIKDYLEDKELSGLAPRTIQSYGDTLNEFSRWLVAEKEIINIEDITPQVIKGYLLYC 63 Query: 124 -ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVA--INPCLSVERPKRKTEGIRPWTKEDMQ 180 + R +T + L ++ F++ ++ + NP ++ P + + I+ ++ E ++ Sbjct: 64 SKERGNTVVTRNGKLQHLKTFFRYLEDEDIIEIRSNPTNKIK-PAKTDKAIKVYSDEQIK 122 Query: 181 QFKSFWS-----EGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTG 230 Q ++ E + + L +G+R + + +I K Sbjct: 123 QMLRYYRRMRSRENTLYSYRGHTIIVALAGTGIRLGELVSMRWDSVDLLNKTITIFGKNR 182 Query: 231 TIITVELPDGFMKLLAMTPIGKE--------TFFINNDKQKMNATQFSIWFKAKATKAGV 282 ++ L D + L + E F ++ + + F + + G Sbjct: 183 KSLSTPLTDKVARELYEWRLFCEKYYIKLPAHVFNDHRGNPLTVNAVKLMFTRLSLRMGF 242 Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 +AH R A+ AG + L + E Y Sbjct: 243 KTTAHMFRHTYASNCLRAGMDIYTLSKLMHHSQIRTTEVYLHA 285 >gi|325953803|ref|YP_004237463.1| integrase [Weeksella virosa DSM 16922] gi|323436421|gb|ADX66885.1| integrase family protein [Weeksella virosa DSM 16922] Length = 355 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 35/263 (13%), Positives = 95/263 (36%), Gaps = 16/263 (6%) Query: 76 SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE----SRKHTPS 131 ++ S + N+ ++ + F + D +T +++ K + + Sbjct: 84 KQFINYLTLKSYSNNTIKTYRTEFLSFLNFFDDVAVENLTPDQLQAYFLVCATQHKLSEA 143 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191 + + +++ ++ ++ E + + + RPK+ + + ++++ S + Sbjct: 144 TINSRMNAVKFYYEKVLKYERMFFD----IPRPKKPLQLPKTLNRKEILLLFSVTD-NLK 198 Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLLA--- 246 + + GLR S+ + + + + +++ K V LP ++ L Sbjct: 199 HLMILKLCYGMGLRVSELAKLKIIDIDSQTMTVRIERGKGKKDRFVTLPQSILEDLRLYY 258 Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATA 304 +T F +++ FK KA + K H +R AT + G Sbjct: 259 VTYRPSYFLFEGRGGSEISTRTIQKVFKDAMHKAKIQKNVGIHSLRHSYATHLLELGTDI 318 Query: 305 HELMATYGWKTVDQAETYTKGAD 327 + G +++ +YT ++ Sbjct: 319 SHIQKLLGHESIKTTLSYTHVSN 341 >gi|23335386|ref|ZP_00120622.1| COG0582: Integrase [Bifidobacterium longum DJO10A] gi|189439114|ref|YP_001954195.1| site-specific tyrosine recombinase XerC [Bifidobacterium longum DJO10A] gi|317482492|ref|ZP_07941508.1| phage integrase [Bifidobacterium sp. 12_1_47BFAA] gi|322689440|ref|YP_004209174.1| tyrosine recombinase [Bifidobacterium longum subsp. infantis 157F] gi|254799326|sp|B3DQV1|XERC_BIFLD RecName: Full=Tyrosine recombinase xerC gi|189427549|gb|ACD97697.1| Integrase [Bifidobacterium longum DJO10A] gi|316916044|gb|EFV37450.1| phage integrase [Bifidobacterium sp. 12_1_47BFAA] gi|320460776|dbj|BAJ71396.1| tyrosine recombinase [Bifidobacterium longum subsp. infantis 157F] Length = 355 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 51/327 (15%), Positives = 94/327 (28%), Gaps = 80/327 (24%) Query: 76 SEYRKSAHWGSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIRSGV--ESRKHTP 130 Y KS L+ N+ ++ + + G D +IT +RS + ESR H Sbjct: 14 VSYLKSNR--GLSANTLKAYRADLTACLHLFELRGVTDLNEITLDDLRSWMAVESRDHAR 71 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK--SFWSE 188 SS + ++R F WA +P ++ P + T+ +Q + + Sbjct: 72 SSMARKTVAVRGFFAWAYEHGLTTTDPAATLMTPSIPSTLPAVLTESQAEQLLDVAEHAV 131 Query: 189 GS----------------------------------------------------QPRLAF 196 + + Sbjct: 132 ATNQYKDDGGAAAAPGSGKAAGKTADKSADTVNRSEAPARADKRDNARVTAESQRNAAIL 191 Query: 197 EFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKL---------- 244 E L +G+R ++ + + N + + + L Sbjct: 192 ELLYATGIRVAELVSMDIADIDFSNRTIKVTGKGNKQRVVPFGLPAQRALETWLEQGRPV 251 Query: 245 LAMTPIGK------ETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATIS 297 LA T F+ +++ A +AGV + S H +R +AT Sbjct: 252 LARTATDAVKSRAANALFLGARGGRIDQRIARDIVHRAAREAGVPDISPHALRHSAATHM 311 Query: 298 ADAGATAHELMATYGWKTVDQAETYTK 324 D GA E+ G ++ + YT Sbjct: 312 LDGGADLREVQEMLGHSSLKTTQRYTH 338 >gi|297171827|gb|ADI22817.1| integrase [uncultured Oceanospirillales bacterium HF0500_29K23] gi|297172180|gb|ADI23160.1| integrase [uncultured gamma proteobacterium HF0770_11A05] Length = 383 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 48/271 (17%), Positives = 94/271 (34%), Gaps = 36/271 (13%) Query: 88 AVNSRISFESYFDQIIRKSG---DFDYRKITTKHIRSGVES--RKHTPSSAIQFLTSMRV 142 + + + S + + + G D ++ K I + + TPS+A + +R Sbjct: 98 SEATADRYASLVQRFLARIGAKAKRDIMHLSAKDISKARDEVFKNLTPSTANMMVKVIRT 157 Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIR-PWTKEDMQQFKSFWSEGSQPRLAFEFLLY 201 A+R ++ N V KR + R P+ ++++ Q LY Sbjct: 158 ALNQALRDGFIDTNEANKVTLIKRHEKANRRPFNMREIRRLLKAADFEWQG--IILCGLY 215 Query: 202 SGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET---FF 256 +G R +D ++L N + +T+KT + + L + P G + F Sbjct: 216 TGQRLTDIALLTWENLDLVNAQLTFQTKKTNRSMALPLAKQLKEYFDKIPAGDDPKAPLF 275 Query: 257 INNDKQKM---NATQFSIWFKAKATKAGV--------------------NKSAHGVRKFS 293 + ++ NA S F KAG+ S H +R + Sbjct: 276 PSAYARRTRNNNAGPLSNQFNKVMVKAGLADHKSHQSTGKGRTSKRKLNELSFHCLRHTA 335 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTK 324 ++ +AG + G ++ + YT Sbjct: 336 TSMLKNAGVSDAVARDIIGHESEAISRQYTH 366 >gi|13541094|ref|NP_110782.1| integrase/recombinase [Thermoplasma volcanium GSS1] gi|14324479|dbj|BAB59407.1| integrase / recombinase [Thermoplasma volcanium GSS1] Length = 283 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 40/253 (15%), Positives = 92/253 (36%), Gaps = 20/253 (7%) Query: 91 SRISFESYFDQIIRKSGDFD--YRKITTKHIRSGVESRKHTPSSAIQF-LTSMRVLFKWA 147 + ++ + + G + + ++ + S+ H ++ + ++++ +K + Sbjct: 25 TIKEYKFLVSKFLAFVGKTPAEVTPMDIERYKTFLASKAHYSKASQYLAIKAIKLFYK-S 83 Query: 148 VRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCS 207 + Y P ++ P+R +E+ + S + + L Y+G+R Sbjct: 84 LDLRY----PV-NLTPPRRSMHMPVYLNEEEASRLLSASKKSVKYSAVISVLAYTGIRVG 138 Query: 208 DSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLA-------MTPIGKETFFIN 258 + C + + I +K+ K V +P+ + L + FI+ Sbjct: 139 ELCNLRIGDVDMQEGIIYVKSGKGDKDRIVVMPNECVSALKEYLNWRISVETPHDFLFIS 198 Query: 259 NDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTV 316 N K + + + K + +AG+NK + H +R AT G + G +V Sbjct: 199 NKKSRYDPSTVERMVKRLSQEAGINKRVTPHVLRHTFATSVLRNGGDIRFIQQILGHSSV 258 Query: 317 DQAETYTKGADRI 329 + YT D Sbjct: 259 ATTQIYTHLDDNA 271 >gi|291287002|ref|YP_003503818.1| integrase family protein [Denitrovibrio acetiphilus DSM 12809] gi|290884162|gb|ADD67862.1| integrase family protein [Denitrovibrio acetiphilus DSM 12809] Length = 410 Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 53/307 (17%), Positives = 101/307 (32%), Gaps = 28/307 (9%) Query: 48 MSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAH----WGSLAVNSRISFESYFDQII 103 + ++ K NS RK T + E+++ G L + ++ + I+ Sbjct: 63 YAEWFPNSKKCRLFNSVRKSHKTFAEVAEEWKEHVERLHKAGELKRTTLRNYMNSLKSIL 122 Query: 104 RKSGDFDYRKITTKHIRSGVESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160 ++ + IT + P S LT +R +F +A Y+ N Sbjct: 123 DYFAIYEMQNITKSLVDDYKFELLDKPLSKKSINNKLTPLRRIFDYAYEMGYIEHNVMDR 182 Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP-RLAFEFLLYSGLRCSDSCRAGVQHLQN 219 V+ + I P+ + ++Q + + + F L ++G+R + ++ Sbjct: 183 VKNFTLELPEIEPFNQLEVQAILNHLQKNNPKFHAMFTILFHTGMRIGEVLAMKWKNFDE 242 Query: 220 NIFSIKTQ-----------KTG-TIITVELPDGFMKLLAM----TPIGKETFFINNDKQK 263 S + KT + V L D MK L T + + F N Sbjct: 243 MFCSYHVKEHFTEKRLDTPKTKASKRIVPLTDEAMKALRNHKQYTFMKSDFIFCNQYGDP 302 Query: 264 MNATQ--FSIWFKAKATKAGVNKS-AHGVRKFSATISADAGATAHELMATYGWKTVDQ-A 319 ++ ++ K G+ + R A++S AG + G K V Sbjct: 303 WVSSDNIMKQVWEPMLKKLGIAYRIIYQCRHTHASLSILAGDNLAHIAERMGHKNVGTLI 362 Query: 320 ETYTKGA 326 Y K Sbjct: 363 TRYAKYV 369 >gi|146297219|ref|YP_001180990.1| phage integrase family protein [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145410795|gb|ABP67799.1| phage integrase family protein [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 360 Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 60/350 (17%), Positives = 114/350 (32%), Gaps = 46/350 (13%) Query: 28 GHGRRIRLPYPHEST-FIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGS 86 G+G+RIR + Y+ + + K +N L + EY K+ Sbjct: 24 GNGKRIRKYKTFDKESEAKKYLIQMLANEGKFIPLNEF------LDRWLEEYAKNY---- 73 Query: 87 LAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA--IQFLTSMRVLF 144 +A + I ++ + + +++ T ++ T S A + + + Sbjct: 74 VAPKTYIKYKDSLKHVRKAFPSHTLQQLNTFELQKFFNQLSQTLSQASVRKIYSVLNNAL 133 Query: 145 KWAVRQEYVAINPCLSVERP-KRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSG 203 K A++ + NP V+ P K + + I+ W E +++F + + A L++G Sbjct: 134 KTAIKWNMLKENPLEFVKLPQKYEEKKIKVWDIETVKKFLEDIKD-EKIHTAVTLALHAG 192 Query: 204 LRCSDSCRAGVQHLQ--NNIFSIKT--QKTGTIITVELPDG-----------------FM 242 LR + C ++ IK QK G I ++ P Sbjct: 193 LRAGEICGLTWDNVDFEKKCIHIKQALQKIGKEIIIKPPKSKTSIRTIYMTSYLYETLLE 252 Query: 243 KLLAMTPIGKET------FFINNDKQKMNATQFSIWFKAKATKAG-VNKSAHGVRKFSAT 295 + P+ + I+ F+ FK + G H +R AT Sbjct: 253 EYKRQEPLREAYKKLGNFVCIHETGNPFCPDYFTHTFKKLVSCLGYPEIRFHDLRHTFAT 312 Query: 296 ISADAGATAHELMATYGWKTVDQ-AETYTKGADRIRLGIKNSRRISSVVD 344 I A G Y D + IK + +I ++ Sbjct: 313 ILLQAQTNPKIAAEILGHSNTKLFLNLYAHVLDEQK--IKATHKIEEILG 360 >gi|302874512|ref|YP_003843145.1| integrase family protein [Clostridium cellulovorans 743B] gi|307690879|ref|ZP_07633325.1| site-specific tyrosine recombinase XerC [Clostridium cellulovorans 743B] gi|302577369|gb|ADL51381.1| integrase family protein [Clostridium cellulovorans 743B] Length = 311 Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 42/284 (14%), Positives = 95/284 (33%), Gaps = 34/284 (11%) Query: 74 LISEYRKS-AHWGSLAVNSRISFE----SYFDQIIR----KSGDFDYRKITTKHIRSG-- 122 L+ +Y + + + N+ + + +F I++ D ++ +I + I+S Sbjct: 9 LVEQYLGYLSIIKNRSENTILEYRIDLLMFFSYILKSRSITVADSNFAQIDLEFIKSINL 68 Query: 123 ----------VESRKHTPSSAIQFLTSMRVLFKWAVRQEY-VAINPCLSVERPKRKTEGI 171 ++ + + + + S+R +K+ + + + N +E PK Sbjct: 69 NDMYSFISYCQKTLNSSAGTRARKIVSIRQFWKYLKTKAHVIDNNIAEELETPKLPKRIP 128 Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231 + E + + + L LR S+ + + N+ S+ K Sbjct: 129 KYLNLEKSFRLLMECKKSIRDHCIITIFLNCALRLSELASLNIDQVNNDTLSV-VGKGNK 187 Query: 232 IITVELPDGFMKLLAMTP-------IGKETFFINNDKQKMNATQFSIWFKAKATKAGVN- 283 + L K + + FI+ + ++ K +G++ Sbjct: 188 ERKIFLTPAAKKAINNWLHIRNSINVDTNALFISRNSNRITTRAIQNIIKKYVLSSGLDS 247 Query: 284 --KSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTK 324 S H +R +AT+ G L G ++V E YT Sbjct: 248 KSISTHKLRHTAATLMYKYGRVDIRSLQQILGHESVATTEIYTH 291 >gi|259907778|ref|YP_002648134.1| site-specific tyrosine recombinase XerC [Erwinia pyrifoliae Ep1/96] gi|259909773|ref|YP_002650129.1| site-specific tyrosine recombinase XerC [Erwinia pyrifoliae Ep1/96] gi|259909780|ref|YP_002650136.1| site-specific tyrosine recombinase XerC [Erwinia pyrifoliae Ep1/96] gi|224963400|emb|CAX54888.1| integrase [Erwinia pyrifoliae Ep1/96] gi|224965395|emb|CAX56927.1| site-specific tyrosine recombinase [Erwinia pyrifoliae Ep1/96] gi|224965402|emb|CAX56934.1| site-specific tyrosine recombinase [Erwinia pyrifoliae Ep1/96] gi|283477639|emb|CAY73555.1| Tyrosine recombinase xerD [Erwinia pyrifoliae DSM 12163] gi|283479866|emb|CAY75782.1| Tyrosine recombinase xerD [Erwinia pyrifoliae DSM 12163] gi|283479875|emb|CAY75791.1| Tyrosine recombinase xerD [Erwinia pyrifoliae DSM 12163] Length = 356 Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 42/289 (14%), Positives = 99/289 (34%), Gaps = 32/289 (11%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQI--------IRKSGDFDYRKITT-KHIR 120 TL+ L + + + + IR + + + + Sbjct: 20 TLRRLAESWLAHLAAAGRSPRTVQGYRERVLAFLAWCEPRGIRYAPQVSLAVLESYQRYL 79 Query: 121 SGVESRKHTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI-RPWTK 176 G T + L+++R+L +W +++ ++ NP + PK + + +++ Sbjct: 80 RGYRKADGTLLAVNGQRHLLSAIRMLLRWLLQRHHILYNPAELLALPKEERRLPAQVFSE 139 Query: 177 ED----MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTG 230 + +Q + G + R E L +G+R ++ + + + +++ K G Sbjct: 140 AETRRVLQSLDAGTPPGLRNRAILELLWSTGIRRTELANLLLSDVDAVRGVVNVRRGKGG 199 Query: 231 TIITVEL----PDGFMKLLA------MTPIGKETFFINNDKQKMNATQFSIWF-KAKATK 279 V + + L FI++ + + + +A Sbjct: 200 RDRVVPVGHTALIWLGRYLKDVRPRLAQRFDSGHLFISHKGTGLGRSTLTAMAGRAIREG 259 Query: 280 AGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 A + K+ H R AT + GA + A G + ++ + YT+ A Sbjct: 260 AHLKKAGACHIFRHSMATQMLENGADTRHIQAILGHEKLETTQIYTRVA 308 >gi|324115014|gb|EGC08979.1| phage integrase [Escherichia fergusonii B253] Length = 395 Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 58/287 (20%), Positives = 110/287 (38%), Gaps = 13/287 (4%) Query: 48 MSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG 107 S TG+ PK+E N ++ T L ++Y S + + Y D I G Sbjct: 87 RSLATGTDPKQEREN--KRMELTFDELFNQYYL-PWAKSAKRSWGKDVQRYRDHIRPAIG 143 Query: 108 DFDYRKITTKHIRSGVESRKHTPSSA--IQFLTSMRVLFKWAVRQEYVAINPCLSVERPK 165 IT I ++ + S+A + + ++ +F WA RQ +++P V+ + Sbjct: 144 QRLLSDITPASILRLQQTLSTSLSAATCNRVIVLIKAVFTWAGRQSMTSVHPARVVQLLR 203 Query: 166 RKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF--EFLLYSGLRCSDSCRAGVQHLQ--NNI 221 R +T++++++ + P A + LL +GLR + A +H+ Sbjct: 204 ENNARQRYFTEDEIRRIFLSADNDTSPVAARYVKLLLLTGLRRDELRLAKWEHVDPVKRT 263 Query: 222 FSIKTQKTGTIITVELPDGFMKLLAMTPIGK-ETFFINNDKQKMNATQFSIWFKAKATKA 280 + K G V L M ++ P + + KQ M + F+ +A Sbjct: 264 LWLPETKNGYGRIVHLNSLAMDVIRTLPTQRGNPWLFIGKKQGMPLSNPVKAFQRIVRRA 323 Query: 281 GV---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 G+ H R A + G T +++ A G ++ ++ Y Sbjct: 324 GIFDKEVCIHTCRHSVAALIVSYGGTLYDVQAQLGHRSSQSSQRYAH 370 >gi|295108956|emb|CBL22909.1| Site-specific recombinase XerD [Ruminococcus obeum A2-162] Length = 363 Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 55/317 (17%), Positives = 104/317 (32%), Gaps = 30/317 (9%) Query: 54 STPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYR 112 + + ++S R L I Y S L + + I+ G+ Sbjct: 40 EFERSKKLSSERSMDMKLSDFIEIYF-SDKQNDLKDRTIKNKRYMMQQHIVPYFGNQMMS 98 Query: 113 KITTKHIRSGVESRKHTPSSAIQFL---TSMRVLFKWAVRQEYVAINPCLSVER-PKRKT 168 +I I + S + LF A + + +NPC V+R + Sbjct: 99 EIKASQIIQWQNEIQKKGYSDSYLRMIQNQLTSLFTHAAKIYDLPVNPCKKVKRMGNSDS 158 Query: 169 EGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL----------- 217 + WT ++ +QF G++ L FE L ++G R + + Sbjct: 159 RSLNFWTLDEYKQFIQTMEPGTRYYLMFEMLFWTGCRIGELLAITKADINFEKNQLSINK 218 Query: 218 ---QNNIFSIKTQ-KTG-TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIW 272 + + I T+ KT + T+E+P+ + + G + Sbjct: 219 TYYRTGMQDIITEPKTKQSFRTIEIPEFLKEEIKEFVDGHYGMPDTERLFPVVQEAVQHK 278 Query: 273 FKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIR 330 K + AGV K H +R + G + G K + TY Sbjct: 279 MKRQIELAGVKKIRVHDIRHSHVAYLIEKGVEPLLIRDRLGHKDIRITLNTYGH------ 332 Query: 331 LGIKNSRRISSVVDSDD 347 L R+I++++D+++ Sbjct: 333 LYPNQQRKIANLLDNEN 349 >gi|218667294|ref|YP_002425983.1| site-specific recombinase, phage integrase family [Acidithiobacillus ferrooxidans ATCC 23270] gi|218519507|gb|ACK80093.1| site-specific recombinase, phage integrase family [Acidithiobacillus ferrooxidans ATCC 23270] Length = 331 Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 54/305 (17%), Positives = 98/305 (32%), Gaps = 31/305 (10%) Query: 29 HGRRIRLPYPHESTFIPA------YMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSA 82 GRR+ P S+ A + LT + P E P L ++ Y K Sbjct: 18 DGRRLHRILPAGSSARDAKQVEARLRAELTSARPLPERAGDPP-----LAAVMPLYLKHL 72 Query: 83 HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRV 142 + + + + + + K IR + P++ + L +++ Sbjct: 73 E-HLRSPETARFHAARITPWLAQYTASEAPKCAAMIIRDMTGAYA--PATINRSLGALKK 129 Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS 202 A QE N ++R E T E + + S S+ + L++ Sbjct: 130 ALTLAWEQELTPENYGARIKRLPEHNERHIYLTLEQVNELASHASDPVAAAIW--IALFT 187 Query: 203 GLRCSDSCRAGVQHLQNNIFSIKTQ--KTGTIITVELPDGFMKLLAMTPIGKETFFINND 260 G R + + + + +I+ KT TV + L P+ Sbjct: 188 GCRRGEITKLKAEDVGETTITIRAGNTKTLKTRTVPIIGPMRLWLPFIPL---------- 237 Query: 261 KQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319 +NA F+ KAG+ H +R A+I +GA + + G + Sbjct: 238 --PINAEGLKSGFRRAREKAGLPHLHFHDLRHSCASILLASGADLYTISRILGHSSTKMT 295 Query: 320 ETYTK 324 E Y Sbjct: 296 ERYAH 300 >gi|209693751|ref|YP_002261679.1| site-specific tyrosine recombinase XerC [Aliivibrio salmonicida LFI1238] gi|208007702|emb|CAQ77813.1| tyrosine recombinase XerC [Aliivibrio salmonicida LFI1238] Length = 303 Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 40/261 (15%), Positives = 81/261 (31%), Gaps = 22/261 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV------ESRKHTPSSAIQFLT 138 L++ ++ +++ I + + SS L+ Sbjct: 24 KGLSIYTQRNYKRQLTTIAEQLIELGVDSWQDVDAGWVRQITSKGMRSGLKASSLSTRLS 83 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---WSEGSQPRLA 195 S+R F + V + + NP V P++ + ++M Q + R Sbjct: 84 SLRSFFDFLVLRNVLQANPAKGVSAPRKSRPLPKNIDVDEMGQLLEVNEDDPLSIRDRAM 143 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLL--------- 245 E + +GLR ++ V+ +Q ++ K V + L Sbjct: 144 MELMYGAGLRLAELVGIDVRDIQLRQGELRVIGKGDKERKVPFSGKAKEWLGHWLQVRNQ 203 Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGAT 303 P K F++ +++ K GVN S H +R AT ++ Sbjct: 204 LANPEEKG-LFVSKLGVRISHRNVQKRMAEWGMKQGVNSHISPHKLRHSFATHMLESSGN 262 Query: 304 AHELMATYGWKTVDQAETYTK 324 + G + + + YT Sbjct: 263 LRAVQELLGHENISTTQIYTH 283 >gi|220917358|ref|YP_002492662.1| tyrosine recombinase XerD [Anaeromyxobacter dehalogenans 2CP-1] gi|219955212|gb|ACL65596.1| tyrosine recombinase XerD [Anaeromyxobacter dehalogenans 2CP-1] Length = 298 Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 39/267 (14%), Positives = 81/267 (30%), Gaps = 24/267 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITT------KHIRSGVESRKHTPSSAIQFLT 138 LA NS ++ + + + + + + R +P S + L+ Sbjct: 19 KGLAENSVEAYGRDLRRYLEHLDELGVDAWERVGRGEIQAHLAELVRRGLSPRSQARALS 78 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS----FWSEGSQPRL 194 ++R L + + +P +E P+ + +++ + + + G + R Sbjct: 79 AIRSLHRLLAAERVTPADPSDEIESPRPGRRLPGLLSHDEVDRLLAAPDVRSAAGIRDRA 138 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTP----- 249 E L +GLR S+ + + + + G + Sbjct: 139 MLELLYATGLRVSELVSLQLNDVNLETRVLVARGKGNKERIVPVGAPAAAAVKAYLAVAR 198 Query: 250 ------IGKETFFINNDKQKMNATQFSIWF--KAKATKAGVNKSAHGVRKFSATISADAG 301 + F+ +M F+ A+ S H +R AT + G Sbjct: 199 ERLLHGRRSKDLFVTPRGGRMTRQGFAKILDRCARRAGIRRRISPHKLRHSFATHLLEGG 258 Query: 302 ATAHELMATYGWKTVDQAETYTKGADR 328 A + G V + YT DR Sbjct: 259 ADLRAVQEMLGHADVSTTQIYTH-VDR 284 >gi|118592747|ref|ZP_01550137.1| Integrase [Stappia aggregata IAM 12614] gi|118434798|gb|EAV41449.1| Integrase [Stappia aggregata IAM 12614] Length = 287 Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 36/250 (14%), Positives = 83/250 (33%), Gaps = 15/250 (6%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRK--ITTKHIRSGVESRKHTPSSAIQFLTSMRV 142 +L+ ++ S+ + R G R + + + + + + Q + ++R Sbjct: 19 RNLSPATQRSYLHAVSKFSRYFGRSPDRLGLEDVRAFQVHLVATGISWPALNQTVCALRF 78 Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS 202 + + Q + + + + + +++ +F + R A + Sbjct: 79 FYGVTLGQAEIP----ERIAYARAPRKLPEVLSADEVVRFLEAVPS-LKTRTALTAAYAA 133 Query: 203 GLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLA---MTPIGKETFFI 257 GLR S+ V + + I+ K G V L + +L + F Sbjct: 134 GLRVSEVVGLKVADIDSQRGVIRIRHGKGGKDRYVMLSAQLLHILRTYWRLARPPDWLFP 193 Query: 258 NNDK-QKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWK 314 + ++ T ++ AG++K + H +R AT + G + G Sbjct: 194 RRNGSGPISITVLHAACRSARAAAGIDKRVTVHTLRHSFATHLLENGTDIRIIQVLLGHN 253 Query: 315 TVDQAETYTK 324 + YTK Sbjct: 254 NLSSTARYTK 263 >gi|307720074|ref|YP_003891214.1| integrase family protein [Sulfurimonas autotrophica DSM 16294] gi|306978167|gb|ADN08202.1| integrase family protein [Sulfurimonas autotrophica DSM 16294] Length = 389 Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 54/328 (16%), Positives = 115/328 (35%), Gaps = 31/328 (9%) Query: 23 YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKR----EYINSPRKKPTTLKWLISEY 78 +YFR + + A A+ + E +K TL EY Sbjct: 53 FYFRNKQKKETVSYNNIT--GLQAIKKAIATRAELKVEIEETGIIKKKDFKTLSEYWDEY 110 Query: 79 --RKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVES--RKHTP--- 130 KS+ W + +++++ +++D I + G+ ++ K+TT+ ++ V R P Sbjct: 111 VFYKSSIW---SPDTKVTNTTFYDKWIREQIGEINFEKVTTRDLQDIVNLILRSSNPKTK 167 Query: 131 -----SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ-FKS 184 +A +R L+ + ++ INP +++E PK + ++ ++ F++ Sbjct: 168 KPYATRTAQSVKQQIRALYNYFIKSNITKINPAINIEIPKFDNTIDFELSDDERKKLFEA 227 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT----QKTGTIITVELPDG 240 + LYSG R ++ +++ + + K + +P Sbjct: 228 INNYELAKFKGVMLFLYSGRRLNEVLTLDWRNIHFHKKTYTIDSIYAKNRRTLEFPIPPV 287 Query: 241 FMKLLAMTPIGKETFFINNDK---QKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATI 296 L K K + ++ F +K + ++K H R Sbjct: 288 LEDFLLSYHPKKTGLIFVAQKDPNKPLSQETFRRHWKIVIDRLDIDKMRIHDTRHLLGNT 347 Query: 297 SADAGATAHELMATYGWKTVDQAETYTK 324 + G + + T G +V Y K Sbjct: 348 MINKGFSLEAVGKTMGHSSVHVTTRYAK 375 >gi|126737207|ref|ZP_01752942.1| tyrosine recombinase [Roseobacter sp. SK209-2-6] gi|126721792|gb|EBA18495.1| tyrosine recombinase [Roseobacter sp. SK209-2-6] Length = 328 Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 43/236 (18%), Positives = 76/236 (32%), Gaps = 19/236 (8%) Query: 107 GDFDYRKITTKHIRSGVESRKHT---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER 163 G I T +R+ + + + P S + L++++ ++W +E L+ Sbjct: 75 GLKALADIKTADMRAWMAQERGSGTGPRSLARRLSAVKSFYRWLAEREGFEPTAVLAARA 134 Query: 164 PKRKTEGIRPWTKEDMQQFKSFWS-------EGSQPRLAFEFLLYSGLRCSDSCRAGVQH 216 PK + + RP +E + G++ L GLR S++ Sbjct: 135 PKFQKKLPRPLAEEAAKAVLERVEQQSETDWIGARDLAVVTLLYGCGLRISEALGLKGGD 194 Query: 217 LQNNIFSIKTQKTGTIITVELPDGFMKL----LAMTPIGKE---TFFINNDKQKMNATQF 269 K G V + D LA+ P E F +N Q Sbjct: 195 APLPASLRILGKGGKERLVPVLDAARDAVDHYLALCPHSAEKETPLFRGVRGGALNPRQI 254 Query: 270 SIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 + G+ SA H +R AT +AG + G ++ + Y Sbjct: 255 QSTMAKVRAQLGLPASATPHALRHSFATHLLEAGGDLRAIQELLGHASLSTTQAYA 310 >gi|320108932|ref|YP_004184522.1| integrase family protein [Terriglobus saanensis SP1PR4] gi|319927453|gb|ADV84528.1| integrase family protein [Terriglobus saanensis SP1PR4] Length = 373 Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 46/299 (15%), Positives = 107/299 (35%), Gaps = 32/299 (10%) Query: 54 STPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK 113 + + +++ ++ + LI Y H+GS ++ +S + I + G R+ Sbjct: 42 NRDENRHLDVKKEINYKMSDLIDRYWT--HYGSKKASADRE-KSIVEGIRSELGRKFVRE 98 Query: 114 ITTKHIRSGVESRKHTP----SSAIQFLTSMRVLFK-----WAVRQEYVAINPCLSVERP 164 + ++ E+ ++A++ M + + WA + NP +E Sbjct: 99 VDGIAVQHWYENLTGKRGLADNTAVRHFNVMHHMMEKASTIWAPETG-IDRNPASLIEVR 157 Query: 165 KRKTEGIRPWTKEDMQQFKSFWSE-------------GSQPRLAFEFLLYSGLRCSDSCR 211 + R ++E++Q+ K+ E + RL + +G+R ++ R Sbjct: 158 RPDDTRERYLSEEELQRMKTALDERILRKGTKDPNQTNRRMRLIVLIAVSTGMRSAEIHR 217 Query: 212 AGVQHLQ--NNIFSIKTQ-KTGTIITVELPDGFMKLLAMTPI--GKETFFINNDKQKMNA 266 ++ + +++ + K G V + + + P G++ F Sbjct: 218 LRWTDVRYGERLLAVRAKLKKGKERFVPMTSELAEEIRRYPTVIGQDRIFPPKGGPASKR 277 Query: 267 TQFSIWFKAKATKAGVNKSA-HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 + F+ +A ++ H +R A+ G +EL G + E Y K Sbjct: 278 QRLEGSFEDLLERANIHDFWFHDLRHTFASWYMMNGGDLYELAKLMGHANIKMTERYAK 336 >gi|134098863|ref|YP_001104524.1| integrase/recombinase [Saccharopolyspora erythraea NRRL 2338] gi|291005779|ref|ZP_06563752.1| integrase/recombinase [Saccharopolyspora erythraea NRRL 2338] gi|133911486|emb|CAM01599.1| integrase/recombinase [Saccharopolyspora erythraea NRRL 2338] Length = 329 Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 54/317 (17%), Positives = 113/317 (35%), Gaps = 45/317 (14%) Query: 64 PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII--------RKSGDFDYRKIT 115 PR++ +L I Y + LA NS ++ + R + + ++T Sbjct: 2 PRQEDASLAHWIEVYLEHLQARKLAANSLRAYRLDLTAVAGELAELTGRGTAELPVDELT 61 Query: 116 TK--HIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173 T + + SS + ++ F + V + V NP + +P+ +P Sbjct: 62 TSVLRSAFARHAAARSASSVTRTWSTWNGFFGFLVVEGVVGGNPMQVIPKPRTAPATPKP 121 Query: 174 WTKED------------MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI 221 ED +++ ++ W E + LL +G+R ++ V L Sbjct: 122 LQGEDTPERLLRTVSAGVRRARNPWPE--RDLAVLATLLCTGVRSAELLDLKVGSLAGRA 179 Query: 222 FSIK---TQKTGTIITVELPDGFMKLLAM-----------TPIGKETFFINNDKQKMNAT 267 + K G ++ + D ++ G + F+++ ++ + Sbjct: 180 GDRRLHVRGKGGKNRSIPIEDALDSVIQNYLETRRARFGERLPGSDPLFVDHREEPLRRG 239 Query: 268 QFSIWFKAKATKAGV------NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321 + AG+ H +R AT A+ GA+A E+ G +++ ++T Sbjct: 240 GLQYLVRQSLRAAGMSDRVQRGAMVHALRHTFATRLAEDGASAAEIAKLLGHASINSSQT 299 Query: 322 YTK-GADRIRLGIKNSR 337 Y A RL ++ +R Sbjct: 300 YIDVTAREQRLSVRANR 316 >gi|222530398|ref|YP_002574280.1| integrase family protein [Caldicellulosiruptor bescii DSM 6725] gi|222457245|gb|ACM61507.1| integrase family protein [Caldicellulosiruptor bescii DSM 6725] Length = 283 Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 34/261 (13%), Positives = 86/261 (32%), Gaps = 34/261 (13%) Query: 89 VNSRISFESYFDQIIRKSGDFDYRKIT-------TKHIRSGVES-RKHTPSSAIQFLTSM 140 ++ ++ + ++ + R+ ++ RS + + +K + L+++ Sbjct: 15 ESTAKTYIRAVENFLKWYQESYDREFDGKVLPLHIRNYRSYLMTVKKLNAKTINNNLSAI 74 Query: 141 RVLFKWAVRQEYVAINPCL----------SVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 + + V + + NP L V K + + + + + Sbjct: 75 KSYCDFLVEKGLIETNPVLDDYFIDVQEPGVSPAKLENKDFNKLEEAVV------HYGSA 128 Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPI 250 + F L Y+G+R S+ C + + + I K G + L + + Sbjct: 129 RDIAIFYTLAYTGVRVSELCNIRLNDIVKDELIIYYGKGGKQRKIPLNRTVREAIDNWLK 188 Query: 251 GK--------ETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAG 301 + + FI+ + ++ + K A + H +R + + + G Sbjct: 189 ERGKYKYSHLDYLFISERGK-LDRSTVYRIIKEYCRIAKIEPIGPHQLRHYFCKRALEKG 247 Query: 302 ATAHELMATYGWKTVDQAETY 322 T E+ A G + + Y Sbjct: 248 FTITEVAALAGHSRITTTQIY 268 >gi|158426110|ref|YP_001527402.1| tyrosine recombinase [Azorhizobium caulinodans ORS 571] gi|158332999|dbj|BAF90484.1| tyrosine recombinase [Azorhizobium caulinodans ORS 571] Length = 306 Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 42/275 (15%), Positives = 81/275 (29%), Gaps = 30/275 (10%) Query: 85 GSLAVNSRISFESYFDQII-----RKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139 + ++ ++ R G + + + R ++ + L++ Sbjct: 18 RGASRHTLDAYGRDLADFEDFLSVRDHGIDAATTDDIRAYLAELTDRGLKATTVARRLSA 77 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF------KSFWSEGSQPR 193 +R L+++ + +P +E PKR + + + + ++ S R Sbjct: 78 IRQLYRFLYAEGRRGDDPAAVLEGPKRGRPLPKVLNVDQVTRLIDTAHDRAGEDVSSPER 137 Query: 194 LAF-------EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246 L E L +GLR S+ + + T K V L + Sbjct: 138 LRRLRVVCLVELLYATGLRISELVSLPAAAARARDVIMVTGKGSKERMVPLSGPAKAAMT 197 Query: 247 M---------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSA 294 + K F + + + K A AGV S H +R A Sbjct: 198 AYLAARAESGLAVSKWLFPTAAESGHLTRQHAARELKDLAVAAGVPPQALSPHVLRHAFA 257 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 + GA + G V + YT D Sbjct: 258 SHLLAHGADLRIVQTLLGHADVSTTQIYTHILDER 292 >gi|297182902|gb|ADI19052.1| integrase [uncultured delta proteobacterium HF0070_07E19] Length = 380 Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 62/356 (17%), Positives = 120/356 (33%), Gaps = 32/356 (8%) Query: 10 FVTKERTRHGKIIYYFR-KGHGRRIRLPYPHEST--FIPAYMS------ALTGSTPKREY 60 V + R G ++ R K G R + S + A + L+G + Sbjct: 13 GVFYQIDRKGNRTFFVRYKLQGSRKHIEERAGSEIHGMTAAKANLLRSERLSGKSNPNTQ 72 Query: 61 INSPRKKPT-----TLKWLISEY--RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK 113 K + TL L EY +S+ + S + E F++ + Sbjct: 73 RKLVEKAESSKNQWTLAKLWEEYAATRSSD-PARPYKSLGADEDRFNKHFSSISQLQPEQ 131 Query: 114 ITTKHIRSGVE--SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171 I + ++ +P++ +R + ++ + P + K Sbjct: 132 IDHINYERWKRNIAKGRSPTTVCHCGELLRRIVRFGTERNLCNGLPFK-LSLKKPDNRTT 190 Query: 172 RPWTKEDMQQFKSFWSEGSQP-RLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQK 228 +E + Q F F L++GLR + R + + I ++ K Sbjct: 191 EYLEREQLNQLIEALKLEEPITGNLFTFALFTGLRRGELLRLEWSDINFEQGIVQLRDTK 250 Query: 229 TGTIITVELPDGFMKLLAMTPI---GKETFFINNDKQKMNATQFSIWFKAKATKAGVN-- 283 G T+ L + + LL P G + F + + + + FK A+++ + Sbjct: 251 AGKDQTLPLSEKALSLLENHPRHQSGCDYVFPSPQGCQWSRSSLDRVFKRIASRSNLPEG 310 Query: 284 -KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD---RIRLGIKN 335 + HG+R ++ A+ GA EL V +E Y +D R R+ + Sbjct: 311 FRLLHGLRHQYGSMLAENGANIVELRDLLRHSDVRVSERYLHSSDEHLRKRINLLG 366 >gi|53712967|ref|YP_098959.1| tyrosine type site-specific recombinase [Bacteroides fragilis YCH46] gi|60681179|ref|YP_211323.1| putative bacteriophage integrase [Bacteroides fragilis NCTC 9343] gi|52215832|dbj|BAD48425.1| tyrosine type site-specific recombinase [Bacteroides fragilis YCH46] gi|60492613|emb|CAH07385.1| putative bacteriophage integrase [Bacteroides fragilis NCTC 9343] gi|301162668|emb|CBW22215.1| putative bacteriophage integrase [Bacteroides fragilis 638R] Length = 406 Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 40/216 (18%), Positives = 79/216 (36%), Gaps = 14/216 (6%) Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE---RPKRKTEGIRPWTKEDMQQF 182 + + ++ + + AV E + NP ++ +PKR+ T ++++ Sbjct: 183 KNISANTQVHYYKVFHHCLNSAVIDEIITSNPMDKIKNEEKPKRRRTERAFLTIDELKIL 242 Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-----IFSIKTQKTGTIITVEL 237 + + AF F + GLR SD +L+ + QKT I+++ L Sbjct: 243 SQTDFHNATLKKAFLFSCFCGLRHSDIVALTWGNLKKGKVGKMELHMTQQKTQEILSLPL 302 Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI-WFKAKATKAGVNK--SAHGVRKFSA 294 + L P+ + + + + + A KAG+ K + H R A Sbjct: 303 S---KEALKQLPVRGKVPDTEKVFKGLISLGRTNEILPKWAAKAGIQKHITFHSARHTHA 359 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 T+ GA + + G + + Y K D + Sbjct: 360 TMMITLGADLYTVSKLLGHTNIQTTQIYAKIVDESK 395 >gi|260560424|ref|ZP_05832599.1| predicted protein [Enterococcus faecium C68] gi|260073584|gb|EEW61911.1| predicted protein [Enterococcus faecium C68] Length = 382 Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 51/328 (15%), Positives = 112/328 (34%), Gaps = 49/328 (14%) Query: 48 MSALTGSTPKREYINSPRKKPTTLKW----LISEYRKSAHWGSLAVNSRISFESYFDQII 103 ALT + E + K T + I Y ++ S V ++ F ++ I+ Sbjct: 46 QLALTKLQLEYESNGLNKSKELTFQEVYDLWIVNYEQTVKESSF-VKTKEQFANH---IL 101 Query: 104 RKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER 163 G KI+ + + +F+ + + +A++ Y+ NP + Sbjct: 102 PAFGALKINKISIDIAQKFANEKVKKFVLYREFINNASRICDYAIKLGYLQDNPFKKITV 161 Query: 164 PKRKTEGIRPWT-----KEDMQQFKSFWSEGSQPRLA--FEFLLYSGLRCSDSCRAGVQH 216 PKRK T KE+++ F + R+ F L ++G+R + + Sbjct: 162 PKRKVSVHEEDTLNFFNKEELEIFLKSVEKKKDIRMYSFFRTLAFTGMRVGELLALTWKD 221 Query: 217 LQ----------------NNIFSIKTQKTG-TIITVELPDGFMKLLAMTPIGKETFFINN 259 + N ++ KT + + + D M +L + + + + Sbjct: 222 IDFNDNYIKINKTLARGKNRRLYVEQPKTKNSKRDIPVDDETMNILKKWRLEQRKWLLTL 281 Query: 260 DKQKMNATQF---------------SIWFKAKATKAGVNK-SAHGVRKFSATISADAGAT 303 ++ Q W + + + + + HG+R A++ +AGA Sbjct: 282 GINTLSKNQLVFSNQKNEYLQLSKPRKWLEVIIKQNNLKRITIHGLRHTHASLLLEAGAN 341 Query: 304 AHELMATYGWKTVDQA-ETYTKGADRIR 330 ++ G ++ + Y D+ + Sbjct: 342 IKDVQERLGHSSIQITMDLYIHITDKRK 369 >gi|295396350|ref|ZP_06806516.1| tyrosine recombinase XerD [Brevibacterium mcbrellneri ATCC 49030] gi|294970790|gb|EFG46699.1| tyrosine recombinase XerD [Brevibacterium mcbrellneri ATCC 49030] Length = 329 Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 46/275 (16%), Positives = 92/275 (33%), Gaps = 35/275 (12%) Query: 85 GSLAVNSRISFESYFDQI-----IRKSGD-FDYRKITTKHIRSGV---ESRKHTPSSAIQ 135 + + ++ ++ + + +GD I ++R + ++ +P + + Sbjct: 38 KNASEHTVRNYIADATNLMEFLARDGNGDPIHLADIEIGNLRQWLLHLSAQGASPGTLAR 97 Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW---------------TKEDMQ 180 + +R F + R A NP + PK+ T ED + Sbjct: 98 RIAGIRSFFTFTTRAGITATNPASRLSTPKKATRLPTVLQQSHTEDVLTQPFEPPAEDAK 157 Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE--- 236 K+ + ++ E L +G+R S+ + I K + Sbjct: 158 LTKTQRAARTRDIALVELLYATGMRVSELVNLDTTDVDWTAGLITVLGKGNKQRRIPFGG 217 Query: 237 -----LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWF-KAKATKAG-VNKSAHGV 289 L + + G+E F+ ++N Q KA A +A S HG+ Sbjct: 218 PSQRALTEWLEVRNHLASEGQEALFVGVRGGRINQRQVRDVVHKATAKRAKSPEISPHGL 277 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 R +AT + GA ++ G T+ + YT Sbjct: 278 RHSAATHMVENGADIRQVQEFLGHATLSSTQIYTH 312 >gi|225018198|ref|ZP_03707390.1| hypothetical protein CLOSTMETH_02136 [Clostridium methylpentosum DSM 5476] gi|224948995|gb|EEG30204.1| hypothetical protein CLOSTMETH_02136 [Clostridium methylpentosum DSM 5476] Length = 348 Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 45/287 (15%), Positives = 100/287 (34%), Gaps = 44/287 (15%) Query: 76 SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH------- 128 ++ K L + + + G KIT +H++ + + Sbjct: 23 KQWFKEYAEVKLRERTIARYRQLEARTYAALGHLHMDKITVRHVQKFIHNLGEEGINQTT 82 Query: 129 ----TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 P + +L+ + +F +A++ + V NPC V+ PK + + + +T E+ Q+F + Sbjct: 83 GGRLAPKTIHHYLSFVSTIFSYAIKMQMVKNNPCEHVQLPKAEQKELDCYTLEEAQEFLN 142 Query: 185 FW-SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIK---------------T 226 E + + F +Y G R + + + + SI+ T Sbjct: 143 LLQKEPLKYQAFFTLAIYGGFRKGELLGLEWKDIDFSTGVISIRRSSLYTKGKGTFTDTT 202 Query: 227 QKTGTIITVELPDGFMKLLAMTP--------------IGKETFFINNDKQKMNATQFSIW 272 + + ++++ D +++L + + F + + M+ W Sbjct: 203 KTKSSQRSLKIADEVLQVLKRYQSQQIFDRARVGDQWVDTDRLFTKWNGEPMHPNSPYTW 262 Query: 273 FKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318 K + G H R +AT+ + A + A+ G V Sbjct: 263 LKRFCERTGQRFLGVHQFRHLNATLLINNRVDAKTISASLGHTQVST 309 >gi|147668708|ref|YP_001213526.1| phage integrase family protein [Dehalococcoides sp. BAV1] gi|146269656|gb|ABQ16648.1| phage integrase family protein [Dehalococcoides sp. BAV1] Length = 332 Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 52/296 (17%), Positives = 104/296 (35%), Gaps = 31/296 (10%) Query: 75 ISEYRKSAHWGSLAVNSRISFESY---FDQIIRKSGDFDYRKITTKHIRSGVESRKHT-- 129 +S Y A G L+ + ++ F ++ G +IT+ H+ ++ + T Sbjct: 31 LSTYLLMAKVGQLSPATISNYRYMCGKFVDFCQEHGVTKPAQITSIHLGLFLQQLQLTNG 90 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 P S + +R W + ++P V PK + I+P+T+E Q+ + S Sbjct: 91 PQSVTDYFKQIRPFINWLKDNGQITVDPLKQVRLPKVPRKVIQPFTQEHCQRLLALVSGE 150 Query: 190 S----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFMKL 244 + + + LL +GLR + + + +K G V + + Sbjct: 151 TFEDKRNKALILLLLDTGLRLRECTELKWSDINYDSELVKVMGKGAKERIVRIGPKVQRA 210 Query: 245 LA-------MTPIGKET--FFINNDK--------QKMNATQFSIWFKAKATKAGVN---K 284 L + G +T +++ K + +AG+ Sbjct: 211 LLEYQYLKIQSFPGDKTPDVWVSRHKTRYSDKECHPLTKNGIMQTIVVLGKRAGITNIRC 270 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340 S H R AT+ GA E+ + G T+ Q Y + + ++ ++ S Sbjct: 271 SPHTFRHTFATMCLRNGAGEFEVQSLMGHSTLTQTRKYAASLN-SEVAVQGHKKFS 325 >gi|271965872|ref|YP_003340068.1| integrase family protein [Streptosporangium roseum DSM 43021] gi|270509047|gb|ACZ87325.1| integrase family protein [Streptosporangium roseum DSM 43021] Length = 339 Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 45/315 (14%), Positives = 109/315 (34%), Gaps = 45/315 (14%) Query: 65 RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG--------DFDYRKITT 116 R P L +++E+ + L+ ++ + + + + D + R ++ Sbjct: 6 RPVPVGLSEVVAEFLSALRTKKLSSHTVAGYRRDLELVAGLAAAAAGVGVADLEVRSLSG 65 Query: 117 KHIRSGVESRK--HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174 + +R+ +P+S + ++ + V + + NP +V RPK+ + +P Sbjct: 66 RLVRTAFAEFSGPRSPASVNRAWSAWNQFLSFCVAEGLLEGNPMAAVPRPKQPAKAPKPL 125 Query: 175 ------TKEDMQQFKSFWSEGS-----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS 223 + +++ + + + L +G+R ++ + + + Sbjct: 126 LGDGSASATLLERIAAGARRARDPWVERDLVVLALALVTGMRSAELLGLTLGSIGGSPGD 185 Query: 224 IK---TQKTGTIITVELPDGFMKL-------------LAMTPIGKETFFINNDKQKMNAT 267 + K G ++ + +L L+ P ++ + + Sbjct: 186 RRIQVVGKGGRSRSLPIEAPVERLVERYLHSRMVRFGLSALPRSA-ALLVDTGNEPLRRG 244 Query: 268 QFSIWFKAKATKAGVNKSA------HGVRKFSATISADAGATAHELMATYGWKTVDQAET 321 + AGV+ H +R AT A+ GA+AHELM G ++ + Sbjct: 245 GLQYLVRQCYRHAGVHDRVQRGTLVHALRHEFATRLAERGASAHELMELLGHSSIVTGQA 304 Query: 322 YTKG-ADRIRLGIKN 335 Y A +R + Sbjct: 305 YIASTAREVRRAAQG 319 >gi|182417327|ref|ZP_02948665.1| tyrosine recombinase XerD [Clostridium butyricum 5521] gi|237668789|ref|ZP_04528773.1| phage integrase family protein [Clostridium butyricum E4 str. BoNT E BL5262] gi|182378835|gb|EDT76354.1| tyrosine recombinase XerD [Clostridium butyricum 5521] gi|237657137|gb|EEP54693.1| phage integrase family protein [Clostridium butyricum E4 str. BoNT E BL5262] Length = 292 Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 34/235 (14%), Positives = 81/235 (34%), Gaps = 15/235 (6%) Query: 103 IRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE 162 +K + +T + ++ + S + + S+R + + Q + P + + Sbjct: 38 RKKVDIYKSDNLTVASYIQNLLNQGKSERSINRIVISLRNFYSYLKSQSLIQEVPKIEYK 97 Query: 163 RPKRKTEGIRPWTKEDMQQF----KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ 218 K + + T E++ + + +G + E + +G++ S+ V+ + Sbjct: 98 SSKNNRKLPQILTIEEVDKIIRIVEKDCPKGIRDNALLELMYATGMKVSELINLNVEDVN 157 Query: 219 NNIFSIK-TQKTGTIITVELPDGFMKLL--------AMTPIGKETFFINNDKQKMNATQF 269 + ++ T + + K L + G F+N + K+ Sbjct: 158 LELNFVRCTDNKHYERIIPIGRSACKALSEYLSIRYKIAQCGVSNLFVNLNGNKLTRQGI 217 Query: 270 SIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 K + KAG++K + R A GA + G + + +TY Sbjct: 218 WRIVKEYSRKAGIDKDVNLNTFRHSFAVHLLQNGANVRAVQKLLGNQVLTYMDTY 272 >gi|319953891|ref|YP_004165158.1| tyrosine recombinase xerc [Cellulophaga algicola DSM 14237] gi|319422551|gb|ADV49660.1| Tyrosine recombinase xerC [Cellulophaga algicola DSM 14237] Length = 308 Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 45/264 (17%), Positives = 98/264 (37%), Gaps = 24/264 (9%) Query: 85 GSLAVNSRISFESYFDQII----RKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFL 137 ++N+ ++E+ ++ I S + +++ IR+ + + K + + + Sbjct: 26 KKYSLNTIKAYENDLNEFILFCKDTSEVVNIDEVSYVMIRNWIVALVAAKIVNRTINRKI 85 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS-----EGSQP 192 S++ +K+ ++ E +++ P + K + P+++ +M + EG + Sbjct: 86 ASLKAYYKFLLKTETISVTPLAKHKALKTAKKIEIPFSEAEMNEILVAIPFSEDFEGIRD 145 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGF----MKLLAM 247 +L E L +G+R + V ++ +IK K V L + L Sbjct: 146 KLIIELLYATGIRRIELVNLKVVNVDLRQKTIKVLGKRNKERIVPLVASLVLLFQEYLDA 205 Query: 248 TPI-----GKETFFINNDKQKMNATQFSIWFKAK--ATKAGVNKSAHGVRKFSATISADA 300 KE F+ K+ T + V KS H +R AT + Sbjct: 206 RSSVVSVGAKEFVFLLKSGGKIYETLVYRVINHYFGLVSSKVKKSPHILRHTFATHLLNK 265 Query: 301 GATAHELMATYGWKTVDQAETYTK 324 GA + + G ++ + YT Sbjct: 266 GADLNSVKELLGHASLASTQVYTH 289 >gi|281357422|ref|ZP_06243910.1| integrase family protein [Victivallis vadensis ATCC BAA-548] gi|281316025|gb|EFB00051.1| integrase family protein [Victivallis vadensis ATCC BAA-548] Length = 314 Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 39/280 (13%), Positives = 87/280 (31%), Gaps = 38/280 (13%) Query: 89 VNSRISFESYFDQIIRKSGDFD----YRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLF 144 R + +++ F+ + + S + + S + L+++R F Sbjct: 24 EAYRSDILEFLRRVMEADESFNAWSQVERNQARRFVSSLFEAGDSKRSIQRKLSALRSFF 83 Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF--------------------KS 184 ++ +R E + NP L + K + + ++ Sbjct: 84 RYMMRMELLGDNPFLKLPPIKADQPLPLVMSINQIDLLTKAVGEYWEMAAANGISKSDEA 143 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDG-- 240 ++ E + GLR S++ + + I ++ + I V Sbjct: 144 AEFAAARDLAMVEVIYSGGLRISETTGLDMGDIDLIGGIARVRGKGKKERIAVLGRPSQK 203 Query: 241 -------FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRK 291 + F+N +++ F K A + + + H +R Sbjct: 204 ALRNYFKLRSTVGGGRAPGSPVFLNKFGKRLTPRSFQRNLKNYLIAANLPPDLTPHKLRH 263 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIR 330 AT DAGA + G + + + YT A+R++ Sbjct: 264 SFATHLLDAGADLRSVQEMLGHENLSTTQIYTHVSAERMK 303 >gi|88813056|ref|ZP_01128298.1| Tyrosine recombinase XerC [Nitrococcus mobilis Nb-231] gi|88789689|gb|EAR20814.1| Tyrosine recombinase XerC [Nitrococcus mobilis Nb-231] Length = 301 Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 34/261 (13%), Positives = 77/261 (29%), Gaps = 21/261 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITT------KHIRSGVESRKHTPSSAIQFLT 138 LA +R + + + G + + S + L+ Sbjct: 16 RRLARLTRQHYRRDLETLAGYCGALGLSGWEQVNATHIRRFIAWRHRSGLAGRSLQRMLS 75 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR----L 194 S+R L+++ +R+ NP V PK + ++ R Sbjct: 76 SIRTLYRYLIREGVTRSNPGTGVRAPKTRQRLPEALDVDETAHLLDEPPASDPLRVRDVA 135 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------ELPDGFMKLL 245 FE L GLR ++ + ++ G + V L Sbjct: 136 MFELLYSCGLRLAELAGLSTDAVTGREAELRVTGKGCKMRVVPIGRQARCALLRWLTLRP 195 Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGAT 303 + + F+ ++++ + + A + G+++ H +R A+ ++ Sbjct: 196 GLARSDEPALFVARHGRRLSHRSIQVRLERLAQRRGLHRRVHPHMLRHSFASHLLESSGD 255 Query: 304 AHELMATYGWKTVDQAETYTK 324 + G + + YT Sbjct: 256 LRAVQELLGHAHIGTTQVYTH 276 >gi|294625939|ref|ZP_06704551.1| phage-related integrase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292599734|gb|EFF43859.1| phage-related integrase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 399 Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 54/302 (17%), Positives = 102/302 (33%), Gaps = 19/302 (6%) Query: 44 IPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-I 102 + A + +K T+K + + +++ ++ D+ I Sbjct: 73 MAQEWLAEVRRGGDPSAAKAAARKAQTMKEYCHTFMEDYSKQRNKPSTQRGYQGVIDRCI 132 Query: 103 IRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVA--INPCLS 160 I G + + + + ++ H P+ A + +R +F A NPC Sbjct: 133 IPILGRMKVQDVKWPDVAALMKKLAHKPAEANRAFGVLRKMFNLAEVWGLRPDGTNPCRH 192 Query: 161 VERPKRKTEGIRPWTKEDM----QQFKSFWSEGSQPR---LAFEFLLYSGLRCSDSCRAG 213 V + R +++ +Q + +EG + LA R S+ C Sbjct: 193 VPM-YPPGKETRLIVDDELVRIFRQLEKLEAEGLESYVIPLAIRLQFEFAARRSEICPLE 251 Query: 214 VQHLQNN--IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFI----NNDKQKMNAT 267 + KTG I+ + + +LL+ P + ++ N+ + Sbjct: 252 WDWVDLEKRRVVWPDSKTGG-ISKPMSEEAYRLLSTAPRREGCPYVLPSPNDPNPHLTHG 310 Query: 268 QFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 + +K AGV HG+R S T A++G MA G KTV Y Sbjct: 311 EHYGGWKRMLKVAGVPHVGTHGIRHRSTTDIANSGVPTKVGMALTGHKTVAMFMHYVHTE 370 Query: 327 DR 328 D+ Sbjct: 371 DK 372 >gi|149919028|ref|ZP_01907513.1| site-specific recombinase, phage integrase family protein [Plesiocystis pacifica SIR-1] gi|149820181|gb|EDM79600.1| site-specific recombinase, phage integrase family protein [Plesiocystis pacifica SIR-1] Length = 363 Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 41/281 (14%), Positives = 84/281 (29%), Gaps = 26/281 (9%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR-- 126 T + E++ + + +++ S E +I G I +HI ++ Sbjct: 55 TFRVFAREFQTNYVATNNKPSTQRSKERVLRLHLIPFFGYMRLDAIGPRHIERYKATKLK 114 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 ++ + LT +R L + A + P + K R + ++ Sbjct: 115 DYSRKTLNNHLTILRKLLETAREWGLIDKVPS--IRWLKAAKPEFRWLDFAEAERLLEAS 172 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQ---------KTGTIITV 235 + R+ L +GLR + Q + + +++ K+G V Sbjct: 173 RCEPEWRMMILLGLRTGLRQGELLALRWQDVCFEARRIAVRQAVAEGILGTPKSGRAREV 232 Query: 236 ELPDG-FMKLLAMTPIGKET----FFINNDKQK---MNATQFSIW-FKAKATKAGVNK-S 285 L + + + F D M W + +A + Sbjct: 233 PLSPATLAEFVRHQARYRHLRSPWVFCQLDGDHAGEMLTKGMCKWPLRRARDRADLEALG 292 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 H +R A+ A G + G T++ Y A Sbjct: 293 WHDLRHSFASHLAMRGVPLKAIQELLGHSTIEMTMRYAHLA 333 >gi|228900732|ref|ZP_04064950.1| Integrase/recombinase [Bacillus thuringiensis IBL 4222] gi|228858916|gb|EEN03358.1| Integrase/recombinase [Bacillus thuringiensis IBL 4222] Length = 305 Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 42/283 (14%), Positives = 98/283 (34%), Gaps = 29/283 (10%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR----KSGDFDYRKITTKHIRSGV--- 123 L+++I +Y + LA + S+ ++ R + + IT I+ + Sbjct: 4 LRFMIKDYLEDKELSGLAPRTIQSYGDTLNEFSRWLVVEKEIINIEDITPPVIKGYLLYC 63 Query: 124 -ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVA--INPCLSVERPKRKTEGIRPWTKEDMQ 180 + R +T + L ++ F++ ++ + NP ++ P + + I+ ++ E ++ Sbjct: 64 SKERGNTVVTRNGKLQHLKTFFRYLEDEDIIEIRSNPTNKIK-PAKTDKTIKVYSDEQIK 122 Query: 181 QFKSFWS-----EGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTG 230 Q ++ E + + L +G+R + + +I K Sbjct: 123 QMLRYYRRMRSRENTLYSYRGHTVIVVLAGTGIRLGELVSMRWDSVDLLNKTITIFGKNR 182 Query: 231 TIITVELPDGFMKLLAMTPIGKE--------TFFINNDKQKMNATQFSIWFKAKATKAGV 282 ++ L D + L + E F ++ + + F +++ G Sbjct: 183 KSLSTPLTDKVARELYEWRLFCEKYYIKLPAHVFNDHRGNPLTVNAVKLMFTRLSSRMGF 242 Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 +AH R A+ AG + L + E Y Sbjct: 243 KTTAHMFRHTYASNCLRAGMDIYTLSKLMHHSQIRTTEVYLHA 285 >gi|294651114|ref|ZP_06728450.1| site-specific tyrosine recombinase [Acinetobacter haemolyticus ATCC 19194] gi|292823008|gb|EFF81875.1| site-specific tyrosine recombinase [Acinetobacter haemolyticus ATCC 19194] Length = 308 Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 47/286 (16%), Positives = 100/286 (34%), Gaps = 28/286 (9%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGVESR----K 127 L+S + K + + ++ +++ R + + + +R + SR + Sbjct: 11 LLSMWLKERIIQNQSAHTISAYQRDLSDFFRFCEYKQLQLQDVEASDLREYLASRVEQDQ 70 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + SS + LTS+R KWA + +Y+ NP ++ ++ E + Q + Sbjct: 71 LSSSSLQRNLTSIRQFMKWAAQGQYLQHNPSADLKLKRQPRPLPGMIDIETVNQILDQAA 130 Query: 188 EG--------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---- 235 + + E L SGLR ++ ++ + N ++ G + Sbjct: 131 PEKPIDQQLWLRDKAMLELLYSSGLRLAELQGLTIKDIDFNRQLLRITGKGNKTRIVPFG 190 Query: 236 -----ELPDGFM--KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSA 286 L + ++ + + FI+ + Q K +A +AGV + Sbjct: 191 TKAKQSLIEWLKIYRIWQGSFMADSAVFISQRGGALMPRQIENRVKLQAQRAGVNVDLHP 250 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 H +R A+ A + G + + YT D +L Sbjct: 251 HLLRHCFASHMLSASRDLRSVQEMLGHSNLSTTQIYTH-VDFDQLA 295 >gi|237738614|ref|ZP_04569095.1| phage integrase [Fusobacterium sp. 2_1_31] gi|229424097|gb|EEO39144.1| phage integrase [Fusobacterium sp. 2_1_31] Length = 371 Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 54/357 (15%), Positives = 117/357 (32%), Gaps = 39/357 (10%) Query: 12 TKERTRHGKIIYYF-----RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66 R+GK Y +G++IR + ++ + + + + NS Sbjct: 12 ISTVIRNGKTYYKANITVGWDSNGKQIRKSFG---SYKKSVVLDKMNTAKYQAKTNSLSN 68 Query: 67 KPTTLKWLISEYRKSAHWGSLAVNSRISFES--YFDQIIRKSGDFDYRKITTKHIRSGVE 124 + L ++ + ++ N+ +E+ + +IT K ++ Sbjct: 69 SDISFGELFKDWIFNFKKIEVSPNTFYEYEASYRLRLMNYSIARKKANQITLKDLQQYFN 128 Query: 125 SRKH--TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK-RKTEGIRPWTKEDMQQ 181 + T ++ + + K+A+ Q + + C V K K E I ++K++ + Sbjct: 129 ELQKDFTANTIKKTYIQIHSCIKFAIIQGIMMKDFCPGVTLQKITKKENINVFSKQEQEM 188 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-------------- 227 + F Y+GLR + +++N+ I Q Sbjct: 189 VLRTLDKRDIVDCLIYFTFYTGLRLGEVLGLQWSDIKDNMVKITRQYRRNVDVDKVDDRK 248 Query: 228 --------KTG-TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKAT 278 KT + + LPD +LL P F +N + + + + Sbjct: 249 LTYTFKELKTKNSAREIPLPDKVQELLKDIPRQGNLIF-SNLGKPIEPKKPQRRIASICK 307 Query: 279 KAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGI 333 K + ++S H +R AT + + G + + YT +L + Sbjct: 308 KLNIPHRSFHSIRHSYATRLFEMDIPIKTVQVLLGHGDIATTMDIYTHVMKEKKLEV 364 >gi|148543941|ref|YP_001271311.1| phage integrase family protein [Lactobacillus reuteri DSM 20016] gi|184153337|ref|YP_001841678.1| phage integrase [Lactobacillus reuteri JCM 1112] gi|227364850|ref|ZP_03848897.1| phage integrase family protein [Lactobacillus reuteri MM2-3] gi|325682524|ref|ZP_08162041.1| phage integrase family site-specific recombinase [Lactobacillus reuteri MM4-1A] gi|148530975|gb|ABQ82974.1| phage integrase family protein [Lactobacillus reuteri DSM 20016] gi|183224681|dbj|BAG25198.1| phage integrase [Lactobacillus reuteri JCM 1112] gi|227070113|gb|EEI08489.1| phage integrase family protein [Lactobacillus reuteri MM2-3] gi|324978363|gb|EGC15313.1| phage integrase family site-specific recombinase [Lactobacillus reuteri MM4-1A] Length = 386 Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 50/368 (13%), Positives = 114/368 (30%), Gaps = 52/368 (14%) Query: 15 RTRHGKIIYYFRK--GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72 R R K Y F G+R + ++ A + Sbjct: 6 RKRGKKWYYRFDIADKDGKRRQYERVGGDSYKEAMHRLRVALELYENTGAVTNTDKISTH 65 Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIR-KSGDFDYRKITTKHIRSGVESRKHT-- 129 + + +L+ N+++++ D+ ++ G + K+T + I+ + + Sbjct: 66 DYFEFWYDNYVKTNLSKNTQLNYRHVLDKYVQPTLGIYQLSKVTPELIQKTINKIADSTE 125 Query: 130 ---------PSSAIQFLTSMRVLFKWAVR-QEYVAINPCLSVERPKRK-----TEGIRPW 174 + L ++ F+ AV + +P V +PK E ++ Sbjct: 126 YKPDHSRLHGHTVEIILMVIKEGFRQAVHPWHILTQSPAEYVRQPKYNHPKTTREDLKII 185 Query: 175 TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQ----- 227 T + Q + G L Y+G+R + ++ + ++ Q Sbjct: 186 TLQQFNQLLEQFPLGHPFHLPLLISFYTGMRRGEVAGLEWDNVSLPDAEINVTQQMKQYS 245 Query: 228 KTGTII----------TVELPDGFMKLLAMTPI--------------GKETFFINNDKQK 263 KT + T+ + D + L + + + Sbjct: 246 KTDVRLGKLKTAASYRTIAIGDQLIHALKVQRRLQNENRLRYGKNYHESNFVCTKENGKP 305 Query: 264 MNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETY 322 + + + G + H +R AT+ +AGA+A E+ G + +TY Sbjct: 306 VTPNSIKYYASTVTKELGFPFNFHSLRHTHATMLLEAGASAKEVQVRLGHNKIATTLDTY 365 Query: 323 TKGADRIR 330 +++ + Sbjct: 366 VHLSNKKK 373 >gi|309775337|ref|ZP_07670345.1| putative tyrosine recombinase XerD [Erysipelotrichaceae bacterium 3_1_53] gi|308916919|gb|EFP62651.1| putative tyrosine recombinase XerD [Erysipelotrichaceae bacterium 3_1_53] Length = 309 Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 35/301 (11%), Positives = 92/301 (30%), Gaps = 28/301 (9%) Query: 74 LISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESRKHTP 130 ++++Y + + L ++ +++ Q + +D +K + + + P Sbjct: 9 IVNQYLQECSIAKELNAHTLKAYQIDLKQFLSFMELYSYDIQKESLHAYITHLHKTYQKP 68 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG-IRPWTKEDMQQFKSFW--- 186 + + + S+ LF + V +++ NP + R+ R + S Sbjct: 69 KTIKRKIASINALFSYLVFHDFIETNPMSRLRTAFREPRLLPRTIPNSHLSSIFSRVYDE 128 Query: 187 ----------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV- 235 ++ E L +G+R S+ C + ++ G + Sbjct: 129 MKDCKTSYQRKVCTRNAAVLELLFSTGMRVSELCHVKDDEINLRERYVRIYGKGAKERIL 188 Query: 236 --------ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKS 285 ++ + L FFIN ++ + + + + Sbjct: 189 QIGNPDVLKILYSYRALFQKEIETSGYFFINKLGNPLSEQSVRLLIARYEKILKIPQHLT 248 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDS 345 H R AT + + G ++ + YT + + I + + + Sbjct: 249 PHMFRHTFATQLLEEDVDIRYIQHILGHSSITTTQIYTHISSNKQKEILYQKNPRNFIGH 308 Query: 346 D 346 + Sbjct: 309 N 309 >gi|297544590|ref|YP_003676892.1| tyrosine recombinase XerD [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296842365|gb|ADH60881.1| tyrosine recombinase XerD [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 290 Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 29/240 (12%), Positives = 88/240 (36%), Gaps = 13/240 (5%) Query: 89 VNSRISFESYFDQIIRK-SGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWA 147 + + + + + ++ +K T + ++ + + ++ + ++S++ + + Sbjct: 25 ESYNRDIKQFLNYLEEIGINYYNVKKSTILNYLYYLKKKGKSQATVSRNVSSLKAFYHYL 84 Query: 148 VRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAFEFLLYSG 203 ++ + +P + PK + + T E + S +G + + E L +G Sbjct: 85 FMKKKIEEDPTYMINTPKVEKKPPTALTVEQVDMLLSIDFGNDEKGLRDKALIELLYATG 144 Query: 204 LRCSDSCRAGVQHLQNNIFSIKTQKTGTII------TVELPDGFMKLLAMTPIGKETFFI 257 L+ S+ ++ + + + + + +E +++ G+ T F+ Sbjct: 145 LKVSEVISLKLEDVNLSYGYVVIRSNKERVIPIGSHAIEALKNYIEKGRKAKNGENTLFL 204 Query: 258 NNDKQKMNATQFSIWFKAKATKA--GVNKSAHGVRKFSATISADAGATAHELMATYGWKT 315 N +K+ + K G + + +R+ A GA + G++T Sbjct: 205 NLRGEKLTRQGCWKIIREYTDKINPGFPVTPNTLRQSFAQHMLQNGADIRAVQEMLGYQT 264 >gi|255037676|ref|YP_003088297.1| integrase family protein [Dyadobacter fermentans DSM 18053] gi|254950432|gb|ACT95132.1| integrase family protein [Dyadobacter fermentans DSM 18053] Length = 290 Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 41/262 (15%), Positives = 85/262 (32%), Gaps = 14/262 (5%) Query: 77 EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQF 136 E R SAH F+ Y + + + + PSS + Sbjct: 12 EKRASAHTIKSYQTDLEQFQKYLLFQYECNEPETAKAPMLRSWVVSMMEEGLNPSSINRK 71 Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-----WSEGSQ 191 + ++R + + +++++ +P + K + + ++ M+ G + Sbjct: 72 IAALRTFYGYLRKKKHIDSDPTKILSALKTRKKLPAFVEEKSMELLFEEGVFSEDFSGLR 131 Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLL----- 245 R+ E L SG+R S+ ++ L +I+ K V + +LL Sbjct: 132 DRVIMELLYGSGIRLSELVELELKDLNLPARTIRVFGKRAKERIVPVSTSLAQLLHKYTE 191 Query: 246 -AMTPIGKETFFINNDKQKMNATQFSIWFKAK--ATKAGVNKSAHGVRKFSATISADAGA 302 + + + + + K A KS H +R AT + GA Sbjct: 192 QRAPEEDTDVLLLTDSNKAIYPVFVQRKVKQYLSAVTTLSQKSPHVLRHTYATHLLNRGA 251 Query: 303 TAHELMATYGWKTVDQAETYTK 324 + + G + + YT Sbjct: 252 DLNAIKELLGHANLAATQIYTH 273 >gi|145639433|ref|ZP_01795038.1| tyrosine recombinase [Haemophilus influenzae PittII] gi|145271480|gb|EDK11392.1| tyrosine recombinase [Haemophilus influenzae PittII] Length = 295 Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 38/260 (14%), Positives = 87/260 (33%), Gaps = 21/260 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITT------KHIRSGVESRKHTPSSAIQFLT 138 ++ ++ +++ D I+ D T + I + + + S L+ Sbjct: 16 RQMSPHTITNYQHQLDATIKILAQQDIHSWTQVTPSVMRFILAESKKQGLKEKSLALRLS 75 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS---FWSEGSQPRLA 195 ++R + V+Q + +NP + PK+ + E +QQ + + R Sbjct: 76 ALRRFLSFLVQQGELKVNPATGISAPKQGRHLPKNMDGEQVQQLLANDSKEPIDIRDRAI 135 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------ELPDGFMKLLA 246 E + SGLR S+ + + + ++ G V + + Sbjct: 136 LELMYSSGLRLSELQGLDLNSINTRVREVRVIGKGNKERVVPFGRYASHAIQEWLKVRAL 195 Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATA 304 P E F++ +++ + + +N + H +R AT +A + Sbjct: 196 FNP-KDEALFVSQLGNRISHRAIQKRLETWGIRQDLNSHLNPHKLRHSFATHMLEASSDL 254 Query: 305 HELMATYGWKTVDQAETYTK 324 + G + + YT Sbjct: 255 RAVQELLGHSNLSTTQIYTH 274 >gi|325840448|ref|ZP_08167047.1| site-specific recombinase, phage integrase family [Turicibacter sp. HGF1] gi|325490315|gb|EGC92644.1| site-specific recombinase, phage integrase family [Turicibacter sp. HGF1] Length = 371 Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 48/360 (13%), Positives = 103/360 (28%), Gaps = 40/360 (11%) Query: 22 IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKS 81 YY K G + T A + + T++ I+ + ++ Sbjct: 14 YYYKYKQDGTYKKKEKGGFKTKKDAQHALREALVIFEKQGLVQAATTYTIEEYINYWMEN 73 Query: 82 AHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGV--ESRKHTPSSAIQFLT 138 L N+ + I + G I +++ + + + S Sbjct: 74 VAEIKLRYNTLDLYRRAIRLHINPEIGFLKLNNIKADTLQTFFTTKQKALSDSYINAIRN 133 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI-RPWTKEDMQQFKSFWSEGSQPRLAFE 197 + FK A++Q + NP +E K E T E ++ S ++ + F Sbjct: 134 ILNGTFKLAIKQGLILFNPMHQLELHYSKVEKNLEIITTEHLKIILDDIS-NTRYYIPFI 192 Query: 198 FLLYSGLRCSDSCRAGVQHL----------------QNNIFSIKTQKTGTII-TVELPDG 240 L++G R + + S+ KT + I T+ + Sbjct: 193 ISLHTGARRGEILALTWDDIHFETRKITFNKSLLAKDGEGVSLAQTKTKSSIRTILMTQK 252 Query: 241 FMKLLAMTP---------------IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS 285 + L + N D +N +FS + + + Sbjct: 253 LITELQQWQDKQNQNKQLYAEYYYTEHDFVCSNEDGTPINPKRFSTQINRISKRLNIPIK 312 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSVVD 344 H +R AT+ ++ + G + Y+ + + + S ++ Sbjct: 313 FHNLRHTHATLLLESDVNIKVIQERLGHSDISTTLNVYSHVTQ--KTEAEAIAKFESNLN 370 >gi|301059797|ref|ZP_07200691.1| site-specific recombinase, phage integrase family [delta proteobacterium NaphS2] gi|300446123|gb|EFK09994.1| site-specific recombinase, phage integrase family [delta proteobacterium NaphS2] Length = 375 Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 47/318 (14%), Positives = 102/318 (32%), Gaps = 34/318 (10%) Query: 59 EYINSPRKKPTTLK----WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKI 114 R P T L++ + + L+ + + + +++ GD +I Sbjct: 58 PLQKKERFTPLTFGEVAESLLAVWDERLKIRELSQKTHNDYVYWLRILMKVFGDKLLCQI 117 Query: 115 TTKHIRSGVESRKHTPSS--AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172 T + I + S+ A + L +R +F ++ VA NP +V + Sbjct: 118 TKEDIEEYRNQKAQEFSNVCANKHLLRIRNVFAHGIKILAVANNPAKAVPLLSERAHIRD 177 Query: 173 PWT-KEDMQQFKSF-WSEGSQPRLAFEFLLY--SGLRCSDSCRAGVQHL-----QNNIFS 223 + ++++ + S+ L LL G + + + Sbjct: 178 TFVLPAELERILAASQKLRSKYYLPAVILLGAEHGASRQEILSLKWSKIKFDFQDIGLVE 237 Query: 224 IKTQKTGTIITVELPDGFMKLL--------------AMTPIGKETFFINNDKQKMNATQF 269 KTG T L K L +T I + F + D +F Sbjct: 238 FFRTKTGRKRTEYLMPRTKKALLEWQSHLDFMRHRKRITDIKTDLVFCHLDGSPF--RRF 295 Query: 270 SIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 +K AG+ H +R + +G + G K + + Y+ + Sbjct: 296 DTAWKKALDLAGIKGLHFHDLRHTFCSNLIISGGGIKDAKEMIGHKDISMTDRYSHLTNG 355 Query: 329 IRLGIKNSRRISSVVDSD 346 L ++ +++++ ++ Sbjct: 356 RMLALQ--KQLAAHYENP 371 >gi|269127047|ref|YP_003300417.1| integrase family protein [Thermomonospora curvata DSM 43183] gi|268312005|gb|ACY98379.1| integrase family protein [Thermomonospora curvata DSM 43183] Length = 314 Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 56/283 (19%), Positives = 101/283 (35%), Gaps = 30/283 (10%) Query: 66 KKPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRS 121 + L+ +S Y LA N+ S+ + +R+ G ++T + Sbjct: 2 AAESALETAVSRYLAHLAADRGLAANTLSSYRRDLRRYAQALRERGRCAIGEVTEADVLG 61 Query: 122 GVE-----SRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173 + H P SA + + ++R L ++AVR+ A +P V P + Sbjct: 62 YLAGLREGDAAHRPLSDRSAARAVAAVRGLHRFAVREGLAAADPAAGVRPPASPKRRPKA 121 Query: 174 WTKEDMQQFKSFW-----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQ 227 + ++++ + G + R E L SG R S++ V L I+ T Sbjct: 122 ISVAEVERLLAAAASEGTPRGLRDRALLELLYGSGARISEAVALDVDDLDLKAGLIRLTG 181 Query: 228 KTGTIITVEL-----------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAK 276 K G + V + LA F+N +++ + +A Sbjct: 182 KGGRVRRVPVGEHARRAVEAYLRQARPHLAKDGTAGAALFLNARGGRLSRQGAWMVLRAA 241 Query: 277 ATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318 A +A + S H +R AT D GA A + G + +Q Sbjct: 242 AQRARLVGVSPHTLRHSFATHLLDGGADAGVVHQLLGNVSAEQ 284 >gi|15893191|ref|NP_360905.1| site-specific tyrosine recombinase XerC [Rickettsia conorii str. Malish 7] gi|34222950|sp|Q92G55|XERC_RICCN RecName: Full=Tyrosine recombinase xerC gi|15620404|gb|AAL03806.1| integrase/recombinase [Rickettsia conorii str. Malish 7] Length = 305 Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 48/284 (16%), Positives = 106/284 (37%), Gaps = 28/284 (9%) Query: 69 TTLKWLISEYRKSAHWG-SLAVNSRISFESYFDQIIR-----KSGDFDYRKITTKHIRSG 122 T+++ LI++++K + + ++ IS+ + + S I T IR Sbjct: 4 TSIQALINKWQKYLALQRNYSNHTVISYNNDLKHFLEFMNYYNSELVTINHIKTADIRLI 63 Query: 123 VESRKH------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176 T SS + L++++ +++ + + + S++ PK+ + ++ Sbjct: 64 RSWLAKRNCDNFTASSISRGLSAVKNFYRFLEKTTQLNSHIIFSIKSPKKTKLLPKALSE 123 Query: 177 ED-------MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229 +D ++++ + + + + SGLR S++ HLQN F K Sbjct: 124 DDVVISLEHIEEYGNVKWVELRNKALLVLIYASGLRISEALSITKLHLQNLEFIRIIGKG 183 Query: 230 GTIITVELPD-------GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282 + ++++L E F +K+ F+ G+ Sbjct: 184 SKERIIPWLPIAKNLITQYLEILPYKLGDNEPIFRGKQGKKLQPPVFNRELIKLKHFYGL 243 Query: 283 --NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 + +AH R A+ + GA L G K++ + YTK Sbjct: 244 PQHLTAHSFRHSFASHLLEHGADLRSLQELLGHKSLSTTQNYTK 287 >gi|237718823|ref|ZP_04549304.1| integrase [Bacteroides sp. 2_2_4] gi|229451955|gb|EEO57746.1| integrase [Bacteroides sp. 2_2_4] Length = 386 Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 49/261 (18%), Positives = 94/261 (36%), Gaps = 18/261 (6%) Query: 92 RISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFL----TSMRVLFKWA 147 R+ + + + K R+ + + + A L +++ +F A Sbjct: 122 RVDKKDILLKDVSKDEICGLFDYMRNKYRNKRQIKTNGGRLADYTLLLFEETVKAIFNKA 181 Query: 148 VRQEYVAINPC---LSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR---LAFEFLLY 201 +R+ V NP +ER + T E++ +F + +E R LAF Sbjct: 182 MREGLVKFNPVHSLNKLERFHAPDKHREYLTPEELTRFLAVEAECENERTVQLAFGLSSM 241 Query: 202 SGLRCSDSCRAGVQHLQ--NNI--FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFI 257 + LR D ++ + + SI +KT + L + LL + Sbjct: 242 TALRLGDMQHLRWCDIKTIDGVPTISIIQRKTKRPAIIPLNEMAQSLLPPRTDDNPESLV 301 Query: 258 NNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKT 315 + +K + S + + KAG+ K H R +A+++ AGA + G + Sbjct: 302 FHLVKK--SDNVSKYVRRLKEKAGIEKDLTYHCSRHTTASLAISAGADISAVKDVLGHGS 359 Query: 316 VDQAETYTKGADRIRLGIKNS 336 + E Y K A ++ N Sbjct: 360 ITSTEVYAKVALEKKIEAVNL 380 >gi|293400627|ref|ZP_06644772.1| integrase/recombinase XerD [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291305653|gb|EFE46897.1| integrase/recombinase XerD [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 303 Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 42/265 (15%), Positives = 85/265 (32%), Gaps = 22/265 (8%) Query: 86 SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-----TPSSAIQFLTSM 140 + ++ + S+ + + + + I + K SS +TS+ Sbjct: 19 NKSLATVASYRNDLKEYLAFLDAHGFTAIEDVTYMDLQDFLKEQKVKKKTSSVNHMITSL 78 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP---RLAFE 197 R+ ++ + L + K + + D+++ + + + E Sbjct: 79 RMFHRYLTMTYPKIPDATLHICSSKTAKKLPTYFNVADIERLLDSFQDSDMDIFHKALLE 138 Query: 198 FLLYSGLRCSDS--CRAGVQHLQNNIFSIKTQKTGTIITVELPD----GFMKLLAMT--- 248 L GLR S+ R + HL+ + K V + + L Sbjct: 139 VLYGCGLRVSELTHLRLNMTHLEQGFLKV-LGKGEKERMVPMHQRSVHALQQYLEFVRPQ 197 Query: 249 --PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATA 304 F+N+ Q ++ K+K T G++ SAH R AT D GA Sbjct: 198 WVKQRSPFVFLNSRGQNISRQYVHNLIKSKLTALGLDERLSAHSFRHSFATHLLDGGADL 257 Query: 305 HELMATYGWKTVDQAETYTKGADRI 329 + G + + YT ++ Sbjct: 258 RVVQELLGHADIATTQIYTHIQNKR 282 >gi|255692297|ref|ZP_05415972.1| tyrosine type site-specific recombinase [Bacteroides finegoldii DSM 17565] gi|260622031|gb|EEX44902.1| tyrosine type site-specific recombinase [Bacteroides finegoldii DSM 17565] Length = 368 Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 31/260 (11%), Positives = 81/260 (31%), Gaps = 19/260 (7%) Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHTPSSA 133 Y + + ++ ++ +YF + ++ I + +K + S Sbjct: 96 YLELLEQKRYSPSTVKTYRAYFSDFMEYHKGRSIDRLKVADINKYILYLVNEKKISVSQQ 155 Query: 134 IQFLTSMRVLFKWAV--RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191 + +++ ++ +++Y + R K +++++++ S + Sbjct: 156 NMRINAIKFYYEQVKGGKRQYYG-----GITRAKEYKTLPEVLSRDEVKRILS-CLTNQK 209 Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG-----FMKLLA 246 + +GLR S+ Q + + ++ G L + Sbjct: 210 HHCMISLIYSAGLRRSELLNLTPQDIVSERMLVRIMGKGKKCRYSLLSEKVLHELREYFK 269 Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHG--VRKFSATISADAGATA 304 K F + ++ +A+ K A +AG+ H +R AT + G Sbjct: 270 EYRPKKWLFEGDTPGEQYSASALVKVLKEAAQRAGIKHRVHVHMLRHSFATHLLEQGTDL 329 Query: 305 HELMATYGWKTVDQAETYTK 324 + G + Y Sbjct: 330 RTIQELLGHNDIKTTSIYLH 349 >gi|222151103|ref|YP_002560257.1| hypothetical protein MCCL_0854 [Macrococcus caseolyticus JCSC5402] gi|222120226|dbj|BAH17561.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402] Length = 339 Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 44/285 (15%), Positives = 92/285 (32%), Gaps = 46/285 (16%) Query: 79 RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYR-KITTKHIRSGV-------------- 123 + +L+ + I++ F + + D KIT K R + Sbjct: 27 LEDKELQNLSRATIINYNKVFTSLSIFFDNIDDPFKITEKQAREYIRYLKNEHVHYKDKL 86 Query: 124 ----ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179 E R S+ ++ + +++ V Y+ NP +++ K++ E I+ ED+ Sbjct: 87 HHKNEIRGLKASTINTYIKLCKSIYQTLVELNYIESNPFKAIKCLKKQNERIKTIPPEDI 146 Query: 180 QQFKSFWSE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--------------NNI 221 + + + + A L + R + + + + Sbjct: 147 NKLLNSLDKSYYTDFRMFTAIHVFLDTFGRIDEVLNIKITDIDFDKRSIYFPNTKNNDGR 206 Query: 222 FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281 + + + KT ++ VEL D + F+ D K F K + Sbjct: 207 YVMFSLKTKKLL-VELIDEMKDY------NNDFVFLAVDGGKFTNQAFRNQLKKYCKEYN 259 Query: 282 V--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 + N + H R ++ + + G L G K + E Y Sbjct: 260 IKTNITPHMFRHTASMLFLENGGNIRVLQKILGHKKLATTEIYAH 304 >gi|144898915|emb|CAM75779.1| Tyrosine recombinase xerC [Magnetospirillum gryphiswaldense MSR-1] Length = 314 Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 49/281 (17%), Positives = 92/281 (32%), Gaps = 23/281 (8%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFES-YFDQIIRKSGDFDYRKITTKHIRSGVESRKH-- 128 WL E R S H +F + + ++ ++ R+ + +R+ Sbjct: 23 DWLAGEKRSSPHTLDGYARDVSAFTTFLLGHLGGEADLAALGQLQPADFRAFLAARQADG 82 Query: 129 -TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS-VERPKRKTEGIRPWTKED-MQQFKSF 185 SS + ++S+R FK+ R + V NP ++ V+ P+ +P ED ++ + Sbjct: 83 LGRSSVARLMSSLRGFFKYLDRHDLV-HNPAINAVKSPRPPKSLPKPLAAEDAIEALSTA 141 Query: 186 WSEGSQPRLA------FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD 239 +P LA F L GLR ++ + + T K V + Sbjct: 142 GELHDEPWLAARDVALFTLLYGCGLRLGEALALQKRDIPAGDAMTITGKGRKQRLVPVLP 201 Query: 240 GFMKLL-------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVR 290 + + F+ +N + G+ + H +R Sbjct: 202 IVRQAIGEYVTLCPHPLAADGPLFVGARGGLLNPGVVQRQMRRLRALMGLPDTATPHALR 261 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 AT G + G ++ + YT D RL Sbjct: 262 HSFATHLLAGGGDLRTIQELLGHASLSTTQRYT-QVDEARL 301 >gi|238028907|ref|YP_002913138.1| site-specific tyrosine recombinase XerC [Burkholderia glumae BGR1] gi|237878101|gb|ACR30434.1| Site-specific recombinase XerC [Burkholderia glumae BGR1] Length = 306 Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 47/280 (16%), Positives = 86/280 (30%), Gaps = 32/280 (11%) Query: 75 ISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTP 130 I+ Y H L+ ++ + + + +T +RS V + Sbjct: 6 IAAYLSYLQHVRQLSAHTLRGYAHELAALTAFASGRPLASLTAADMRSAVARAHAGGLSA 65 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---- 186 S L++ R ++W ++ + NP +V PKR + + +D Sbjct: 66 RSIAHRLSAWRAFYRWYAQRVEMPANPVATVRAPKRARALPKALSVDDANTLMESAFPDT 125 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRA-------------GVQHLQNNIFSIKTQKTGTII 233 EG + R E SGLR ++ G S+ K G Sbjct: 126 PEGLRDRAIVELFYSSGLRLAELVGLDVHYVNADGYRSAGWLDRGEAELSV-LGKGGKER 184 Query: 234 TVELPDGFMKLLAMTPIGKE--------TFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284 V + ++ L +E F++ +M K A AG+ Sbjct: 185 KVPVGRKALEALDAWLAVREGWVRGDPHPLFLSVRGNRMAPGVVRERVKRAARVAGIPAN 244 Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 H +R AT + + G ++ + YT Sbjct: 245 VHPHVLRHSFATHVLQSSGDLRAVQELLGHASISATQVYT 284 >gi|257784281|ref|YP_003179498.1| tyrosine recombinase XerD [Atopobium parvulum DSM 20469] gi|257472788|gb|ACV50907.1| tyrosine recombinase XerD [Atopobium parvulum DSM 20469] Length = 302 Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 39/266 (14%), Positives = 87/266 (32%), Gaps = 23/266 (8%) Query: 85 GSLAVNSRISFESYFD-QIIRKSGDF--DYRKITTKHIRSGVESRKH---TPSSAIQFLT 138 L+VN+ ++ + + SG ++T + + S + P+S + Sbjct: 18 RGLSVNTLDAYTRDLEGYLFWLSGKKITSPNQVTRSDVEEYIGSLRDLGMAPASVERHTA 77 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRL 194 ++R K+ ++ +P + R ++E ++ G + + Sbjct: 78 AIRNFHKFMAVEQICESSPAEDLPTTARIQRLPDVISQEKAEELLDQPFPNSPLGIRDKA 137 Query: 195 AFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGK 252 E L GLR S+ C V+ + ++ + + + + + L + L + Sbjct: 138 ILELLYGCGLRVSELCDLEVRGVLLEDELLRVFGKGSKERVVPVLGSAYRALKTYLFEAR 197 Query: 253 ETF---------FINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGA 302 F+N +++ G+ H +R AT + GA Sbjct: 198 SLLLKHGQVSEVFVNARGGRISRQSVHKLVANYGRVVGIEGLHPHTLRHSFATHLLEGGA 257 Query: 303 TAHELMATYGWKTVDQAETYTKGADR 328 + G + + YT DR Sbjct: 258 DLRSVQELLGHVDISTTQLYTH-VDR 282 >gi|223934444|ref|ZP_03626365.1| integrase family protein [bacterium Ellin514] gi|223896907|gb|EEF63347.1| integrase family protein [bacterium Ellin514] Length = 341 Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 50/300 (16%), Positives = 106/300 (35%), Gaps = 29/300 (9%) Query: 48 MSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII--RK 105 ++A G + + TL+ + +Y++ + + ++ Y I + Sbjct: 48 LAARAGRLTQEAIGYLISGRKLTLQKALEDYQEWMETRGKSPRTIMNNVHYIRSWITAAQ 107 Query: 106 SGDFDYRKITTKHIRSGVESRKHTPSSAIQ---FLTSMRVLFKWAVRQEYVAINPCLSVE 162 IT KHI + +R + + A L ++R F + + + +P V Sbjct: 108 VEALPPAAITEKHISDWINNR-ESQTKANSRTIMLAAIRSFFFFIAGKGWTPNDPSKLVS 166 Query: 163 -------RPKRKTEGIRPWTKED----MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCR 211 +++T R +T + ++ FW R A + GLR D C+ Sbjct: 167 VNYKILSHVQKETTVKRVFTAAEYDGLVKATDGFW------RFAIQASRELGLRLGDICQ 220 Query: 212 AGVQHLQN-NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ----KMNA 266 + ++ T K +++++ DG + + P+ + ++ Sbjct: 221 LEWDCFRQPGYITVWTDKRDKRVSLKMSDGLAQAATLQPVAHARYVFPEERDIINDPTRR 280 Query: 267 TQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 S+ F + G+ KS H +R AT S G + ++ + G + E Y Sbjct: 281 AYLSVSFTRICARLGLKGKSFHCLRHTFATESNAEGRSLTQIASDMGHSSTRTTEGYVHK 340 >gi|225021106|ref|ZP_03710298.1| hypothetical protein CORMATOL_01118 [Corynebacterium matruchotii ATCC 33806] gi|224946106|gb|EEG27315.1| hypothetical protein CORMATOL_01118 [Corynebacterium matruchotii ATCC 33806] Length = 331 Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 42/292 (14%), Positives = 87/292 (29%), Gaps = 21/292 (7%) Query: 54 STPKREYINSPRKKPTTLKWLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDF-DY 111 + S T L+ I+++ + H + + + S + + F D+ Sbjct: 23 QSQATSAAASEPVASTQLQEAIADFAEHLHLVVGRSPATVAGYRSDLIDFCQHAHTFEDF 82 Query: 112 RKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171 + + + ++ + + R W RQ Y+ N + PK Sbjct: 83 TLVNLRAWLGAAVDAGKSRATIARRAAAARSFSSWCERQGYLDTNVAARLAVPKSGRSLP 142 Query: 172 RPWTKEDMQQF-----KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK- 225 T + + E + E L +G+R S+ C + + + ++K Sbjct: 143 TVVTPTAAETLMVSSQATTEPEYLRDTAMLELLYATGIRVSELCGIDLADVNYSRNTVKV 202 Query: 226 TQKTGTIITVELPDGFMKLLAM------------TPIGKETFFINNDKQKMNATQFSIWF 273 T K V + L F+ +++ Sbjct: 203 TGKGNKQRVVPFGNPAASALKAWRDHGRPHLLNPKKPAHNALFLGARGGRIDPRMVRTVV 262 Query: 274 KAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 + GV+ H +R +AT D GA + G ++ + YT Sbjct: 263 ARAGKQLGVDGLGPHSLRHSAATHMLDGGADLRVVQELLGHSSLQTTQIYTH 314 >gi|29566149|ref|NP_817718.1| gp41 [Mycobacterium phage Che9c] gi|29424874|gb|AAN12601.1| gp41 [Mycobacterium phage Che9c] Length = 400 Score = 105 bits (261), Expect = 2e-20, Method: Composition-based stats. Identities = 49/342 (14%), Positives = 109/342 (31%), Gaps = 52/342 (15%) Query: 28 GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSL 87 G +R+R YP E A ++ + G + Y++ ++ T++ ++ + Sbjct: 39 GKRKRLRRRYPTEKEARDA-LAQIRGQVAQGTYVHPTQR---TVREACDDWLAGKRAANR 94 Query: 88 AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH--------------TPSSA 133 A ++ +E +I + G+ + +K+T +H+ V + + +P S Sbjct: 95 AESTVDGYEEKLTVVIEQLGEIEIQKLTKRHLDDLVTALREGGLPSPNGKPRKPWSPRSV 154 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193 L + + + +Q + N V+R + P T+ +++ + G + Sbjct: 155 NYLLGLLVSILESEQKQGHTVRNVAALVDRIEANPTPPDPLTESEVETLLA-HIAGDRYA 213 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT----------------GTIITVEL 237 +A+E L G R ++ + + ++ Q T + + L Sbjct: 214 IAWELALA-GFRLAEISGLRWCDVDLDARTVTVQNTRLQRGKKRIEKTPKSRASRRELPL 272 Query: 238 PDGFMKLLAMTPI--------------GKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283 PD +N + + AG+ Sbjct: 273 PDDLFAAFKAARKIQAADQLRLGEAYEASGYVVVNEAGTPLTPNAIENRWARVLKAAGLR 332 Query: 284 K-SAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYT 323 H R T+ G + A G + +TY Sbjct: 333 HVRLHDARHTCGTLMHLRGVPTALISAWLGHASKAFTLQTYV 374 >gi|291166237|gb|EFE28283.1| integrase-recombinase [Filifactor alocis ATCC 35896] Length = 307 Score = 105 bits (261), Expect = 2e-20, Method: Composition-based stats. Identities = 45/295 (15%), Positives = 99/295 (33%), Gaps = 27/295 (9%) Query: 71 LKWLISEYRKSAHWGS-LAVNSRISFESYFDQ--IIRKSGDFDYRKITTKHIRSGVESRK 127 L+ L+ EY K + L + S++ Q + + YRK + ++ Sbjct: 3 LENLVDEYLKVCENQNNLNYKTVKSYKLDLKQYMVFLDKEENYYRKEILCKYIEMLHTKD 62 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE-RPKRKTEGIRPWTKEDMQQFKS-- 184 + + + + +++ F + V ++ + NP + + R K + ++ Sbjct: 63 YRVKTIKRKIATLKAFFSYLVYEDILEYNPFVKIRLRLKEPVILPKTIPIVYLENLFKCL 122 Query: 185 ------------FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTG 230 + S+ + E L+ +G+R S+ C + + + I + Sbjct: 123 YDERDNADKNTYKYKALSRDIIILEILISTGIRISELCDLRKEQISYSERMIRIYGKGDK 182 Query: 231 TIITVELPDGFMKLLA-----MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--N 283 I + K + K FFIN K++ K KA + N Sbjct: 183 ERILPVYNENLWKEIKQYEELFGLEIKGYFFINRINNKLSDQSVRNMIKKNCKKASIPIN 242 Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRR 338 + H R AT+ + + + G ++ + YT ++ I + Sbjct: 243 ITPHMFRHTFATLLLENDVDSRNIQQILGHSSITTTQIYTNITSNKKIEIMKYKN 297 >gi|315604538|ref|ZP_07879601.1| tyrosine recombinase XerC [Actinomyces sp. oral taxon 180 str. F0310] gi|315313550|gb|EFU61604.1| tyrosine recombinase XerC [Actinomyces sp. oral taxon 180 str. F0310] Length = 303 Score = 105 bits (261), Expect = 2e-20, Method: Composition-based stats. Identities = 49/300 (16%), Positives = 100/300 (33%), Gaps = 33/300 (11%) Query: 68 PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG-------DFDYRKITTKHIR 120 ++ EY + ++ ++ ++ ++ +G +T + IR Sbjct: 2 EASVGDRWGEYLRHGR--GMSDHTIEAYLGDLRSLLSFAGLAWEASAAELAEALTQRRIR 59 Query: 121 SGVE---SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177 S + +R S+ + S+R WA R+ +A +P + P+ P + Sbjct: 60 SWLADTLARGGARSTIARHTASVRHFTAWATREGILAHDPAALLTSPRADQRLPAPLDES 119 Query: 178 DMQQFKSFW--------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229 + + + + E + GLR S++C + L +++ Sbjct: 120 EARLLLNHARDEARGGGPSQLRNWAILELIYACGLRVSEACGLDISSLNREALTVRVTGK 179 Query: 230 GTIITV-----ELPDGFMKLLAMTPI------GKETFFINNDKQKMNATQFSIWFKAKAT 278 G V D L + F+ + +++ A A Sbjct: 180 GNKERVVPYGPPAADALDHWLLRGRALLAREGSGDALFLGDRGGRIDPRIVRSMVHAAAA 239 Query: 279 KAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 +AGV + + HG+R +AT GA + G ++ + YT D RL R Sbjct: 240 RAGVHDVAPHGLRHSTATHLLQGGADLRAVQEMLGHASLATTQRYTH-VDTARLSAIYQR 298 >gi|283479906|emb|CAY75822.1| Tyrosine recombinase xerD [Erwinia pyrifoliae DSM 12163] Length = 351 Score = 105 bits (261), Expect = 2e-20, Method: Composition-based stats. Identities = 43/289 (14%), Positives = 96/289 (33%), Gaps = 32/289 (11%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFE---SYFDQIIRKSGDFDYRKITTKHIRSGVESR 126 TL+ L + + + + F G +++ + + Sbjct: 20 TLRQLAESWLAHLVVAGRSPRTVQGYRERVRAFLAWCEPRGITXAPQVSLAVLEAYQRWL 79 Query: 127 KHTPSSAIQ---------FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI-RPWTK 176 + + + LT++R+LF+W +++ + NP + PK + + +++ Sbjct: 80 QGYRRADGKQLVVNSQLGVLTAIRMLFRWLLQRHVILYNPAELLALPKEERRLPAQVFSE 139 Query: 177 ED----MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTG 230 + +Q + G + R E L SG+R S+ + + + +++ K G Sbjct: 140 AETRRVLQSLDAGTPPGXRNRAILELLWSSGIRRSELAGLLLSDVDFTRGVVNVRRGKGG 199 Query: 231 TIITVEL----PDGFMKLLA------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKA 280 V + + L FI++ + + + Sbjct: 200 KDRVVPVGHTALMWLGRYLKDVRPRLAQRFDSGXLFISHKGTGLAHGTLTAMAGRAIREG 259 Query: 281 GVNKSA---HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 K A H R AT + GA + A G + ++ + YT+ A Sbjct: 260 AHLKXAGACHIFRHXMATQMLENGADTRHIQAILGHEKLETTQIYTRVA 308 >gi|148284235|ref|YP_001248325.1| site-specific tyrosine recombinase XerD [Orientia tsutsugamushi str. Boryong] gi|146739674|emb|CAM79467.1| site-specific recombinase [Orientia tsutsugamushi str. Boryong] Length = 309 Score = 105 bits (261), Expect = 2e-20, Method: Composition-based stats. Identities = 40/287 (13%), Positives = 97/287 (33%), Gaps = 35/287 (12%) Query: 73 WLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKS------GDFDYRKITTKHIRSGVES 125 + ++ ++ +++ NS ++++ + S Sbjct: 2 DFLEQFLETVLAEKNVSANSLLAYKRDLQDFSDFLKSIQLQSSLAVTTKDIDSFIQHLLS 61 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + + S + ++++R + + + + V + ++E P+ T+ + + ++++ + Sbjct: 62 KNLSFRSIARKISTLRQYYLFLLTENVVQPDLVTNIEVPRYSTKLPKILSIKEIKMLIDY 121 Query: 186 W-----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ----NNIFS---IKTQKTGTII 233 +EG + L +GLR S+ + L+ + K Sbjct: 122 CFKDTTAEGIRTLAMICLLYSTGLRVSELVSVKITDLKFDHNTGKIKNHFVILGKGNKER 181 Query: 234 TVELPD----------GFMKLLAMTPIGKETFFINNDKQK---MNATQFSIWFKAKATKA 280 V + D + + K + ++ K K M F+I K A A Sbjct: 182 LVIMNDLTGDVISRYLPYRDFFSPFKNAKNSVYLFPSKAKQGYMTRQNFAILLKNAAINA 241 Query: 281 GV---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 G+ N S H +R A+ + GA + G + + YT Sbjct: 242 GLSPDNVSPHILRHSFASHLLEGGADLKVIQELLGHVDISSTQIYTH 288 >gi|261492284|ref|ZP_05988847.1| putative integrase/recombinase [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261312063|gb|EEY13203.1| putative integrase/recombinase [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 346 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 62/337 (18%), Positives = 105/337 (31%), Gaps = 31/337 (9%) Query: 7 LPPFVTKERTRHGK----IIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN 62 LP + R + G Y++ +G+ L Y + L K + N Sbjct: 12 LPQNLLCRRRKRGNGQIVEYYFYVLSNGKEKSLG-------TNKYEAVL--EAAKLNFEN 62 Query: 63 SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIR 120 S + + Y A N+R S + + G+ KI KHI Sbjct: 63 SKKSPVVLFIDVAKRYELEIVPTKKAKNTRQSNLQAIHWLCKFFGNPPAPLEKIEPKHIS 122 Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVA-INPCLSVERPKRKTEGIRPWTKEDM 179 ++ RK TP+ A + ++ A Y +P V++ K + + Sbjct: 123 QYLQWRKDTPAVANIEVGLFNTIWNMAREWGYTTLPSPSQGVKKFPTKYREVYV-EDYIL 181 Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD 239 + F E E G R D C H+ + I I QKTG + E+ Sbjct: 182 DKIYEFADERMAD--IIETAYLLGQRPIDICNIHRSHIYDGILHITQQKTGKKVRFEISG 239 Query: 240 GFMKLLA-MTPIGKETFFINNDKQKMNATQFSIWFKAKATKA---------GVNK-SAHG 288 ++L + F N +K+ FK +A + K Sbjct: 240 RLKEILDKRLGYESDWIFTNKWGKKLKRRSLGDHFKEIRERAMKAYPELADEIAKVQMRD 299 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 +R +AT + T + G + Y + Sbjct: 300 MRAKAATDISLM-TTDEQAQKQLGHTSKRMTHHYIRK 335 >gi|240169740|ref|ZP_04748399.1| hypothetical protein MkanA1_10532 [Mycobacterium kansasii ATCC 12478] Length = 373 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 62/356 (17%), Positives = 119/356 (33%), Gaps = 35/356 (9%) Query: 19 GKIIYYFRKGHGRRIRLPYPHES-TFIPAYMSALTGSTPKREYINSPRKKPT--TLKWLI 75 G+ F G I P + A+++ + + + KP T Sbjct: 16 GRYQVRFTDPDGNYITAPKTFAARIDAEAWLTDRRREIDAKLWNPASVAKPDKITFGAYA 75 Query: 76 SEYRKSAHWGSL--AVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVE-SRKHTPS 131 S + +R +++ D +I G IT K +R + + P+ Sbjct: 76 SAWLAGRQVAGRPIKQRTREHYQAILDDHLIETFGTRQLAAITPKAVREWYAVTLTNRPT 135 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT-EGIRPWTKEDMQQFKSFWSEGS 190 + +R + AV E + NPC V + K IRP + +++ + E Sbjct: 136 MRSHAYSLLRTIMGSAVNDELIDTNPCRIVGAGRAKRVHKIRPASVDELATLTNAMPE-- 193 Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIK-----TQKTGTIITVELPDGFMK 243 + RL + LR ++ + + + ++ T +T D ++ Sbjct: 194 RLRLMVTLASWCALRFGETVELRRSDIDLSDEMIRVRRAAVRTGGGSFQVTTPKSDAGVR 253 Query: 244 LLAMTP----------------IGKETFFINNDKQKMNATQFS-IWFKAKATKAGVNKSA 286 +A+ P F + + + + W+KA+ + Sbjct: 254 DVAIPPHIIPQIEDHLSKYVGSKRDSLLFAAQNGGHLQPSTLTRHWYKARKAANRDDLRW 313 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD-RIRLGIKNSRRISS 341 H +R A ++A GA+ ELMA G T A Y A R R ++++ Sbjct: 314 HDLRHSGAVLAAATGASLAELMARLGHSTPQAAMRYQHAAQGRDREIAALLSKLAA 369 >gi|312134834|ref|YP_004002172.1| integrase family protein [Caldicellulosiruptor owensensis OL] gi|311774885|gb|ADQ04372.1| integrase family protein [Caldicellulosiruptor owensensis OL] Length = 400 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 52/312 (16%), Positives = 101/312 (32%), Gaps = 48/312 (15%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVE---SR 126 LK + + +L ++ + Y ++ I G + +++ +H+++ Sbjct: 74 LKDWLHTWLWEYKKQTLRPSTFKDYLCYIERHINPTIGHYKLKELRPEHLQTLYNVKYQE 133 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE-GIRPWTKEDMQQFKSF 185 + S+ Q T + A++ V N + PK K + IR + E+ Q+F + Sbjct: 134 GLSISTIKQIHTVLHSALDQALKNGLVNRNVSEATTLPKGKPKREIRILSLEEQQRFIAA 193 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQ---------------- 227 E + + AF L SGLR + + + ++ ++ Sbjct: 194 L-ERERLKTAFLVELASGLRIGELLALRWKDVNFKDGYIEVRRSLQRVRIFDGGNSKKTA 252 Query: 228 ------KTGT-IITVELPD------------GFMKLLAMTPI--GKETFFINNDKQKMNA 266 KT V LP + L + + F ++ Sbjct: 253 LAFQEPKTEAGKRIVPLPPVIIEELKQHRKKQLEEKLKAGALYEDNDLVFATELGTPIDP 312 Query: 267 TQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYT 323 F F KAG++KS H +R AT +A + G K + Y+ Sbjct: 313 RNFERLFYRIREKAGLDKSVNFHALRHTYATRLLEANEHPKVVQELLGHKDISTTLNIYS 372 Query: 324 KGADRIRLGIKN 335 I+ Sbjct: 373 HVMPEIKKAAAM 384 >gi|168213629|ref|ZP_02639254.1| phage integrase [Clostridium perfringens CPE str. F4969] gi|170714780|gb|EDT26962.1| phage integrase [Clostridium perfringens CPE str. F4969] Length = 400 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 54/311 (17%), Positives = 93/311 (29%), Gaps = 51/311 (16%) Query: 64 PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRS 121 P TL + + L +S +E + I G + T HI++ Sbjct: 71 PTDDKITLSQWFYTWLFTYRIHDLKPSSFERYEGLYRNYIEFSSLGKIKLIDLRTHHIQA 130 Query: 122 G----VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK---RKTEGIRPW 174 V + +PS+ ++ A+++ Y+ N C + PK E I + Sbjct: 131 YYNSLVAEKGKSPSTIKTINKCLKSCLNQALKEGYITKNYCTLITLPKGPETSKETINIF 190 Query: 175 TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSI-------- 224 T E+ Q F ++ + + L +GLR + + +NN I Sbjct: 191 TLEEQQTFMREC-MNNKNGMLYILALGTGLRLGEILALKWTDINFKNNYIDINKAIKSTY 249 Query: 225 --------------KTQKTGTII-TVELPDGFMKLLAMTPI--------------GKETF 255 + KT I TV L + ++LL Sbjct: 250 KIDSKGNREFQIIEQQPKTKNSIRTVPLNNNLIELLQQHRKKQMIDRDSNIEIYFDNNLV 309 Query: 256 FINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWK 314 F +N + FK K + H +R AT + G + G Sbjct: 310 FSTPIGNYLNESNVRKTFKRILKKCNLKELRFHDLRHTFATRLFENGVPPKTVQTILGHS 369 Query: 315 TVDQA-ETYTK 324 + YT Sbjct: 370 DISTTLNIYTH 380 >gi|94310181|ref|YP_583391.1| phage integrase [Cupriavidus metallidurans CH34] gi|93354033|gb|ABF08122.1| tyrosine-based site-specific recombinase CMGI-2 [Cupriavidus metallidurans CH34] Length = 399 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 57/328 (17%), Positives = 104/328 (31%), Gaps = 36/328 (10%) Query: 48 MSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKS 106 A + +K T+ L ++ + +++ ++ D+ II Sbjct: 77 WLAEVRRGGDPGGAKAEARKAPTMAELCKKFMEDYSKKRNKPSTQDGYQGVIDRNIIPLL 136 Query: 107 GDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVA--INPCLSVERP 164 G + I +E + P+ A + +R +F A Y NPC V Sbjct: 137 GRKKVHDVKRPDIAGLMEKLAYKPTEANKTFGVLRKMFNLAEVWGYRPDGTNPCRHVPMY 196 Query: 165 KRKTEGIRPWTKEDMQQFKSFWS----------EGSQPRLAFEFLLYSGLRCSDSCRAGV 214 E +E ++ F+ RL FEF R S+ C Sbjct: 197 PPGKETRLIVDEEMVRIFRHLEKLEAEGLENYVIPLAIRLQFEFA----ARRSEICPLEW 252 Query: 215 Q--HLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFI----NNDKQKMN-AT 267 +N K G I+ + + +LL+ P + ++ N+ + + Sbjct: 253 SWLDFENRRVVWPDSKVGG-ISKPMSEEAYRLLSTAPRREGCPYVLPSPNDSTKHLTFGE 311 Query: 268 QFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 + W + + HG+R S T A++G M G KTV Y D Sbjct: 312 HYGGWCRVLKAAGVPHVGTHGIRHRSTTDIANSGVPTKVGMKLTGHKTVAMFMHYVHTED 371 Query: 328 R-----------IRLGIKNSRRISSVVD 344 + R I +R+++ Sbjct: 372 KPVRDAAELVASRRQAITGARQLAEAAA 399 >gi|308068307|ref|YP_003869912.1| Integrase [Paenibacillus polymyxa E681] gi|305857586|gb|ADM69374.1| Integrase [Paenibacillus polymyxa E681] Length = 375 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 60/357 (16%), Positives = 119/357 (33%), Gaps = 45/357 (12%) Query: 9 PFVTKERTRHGKII-YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKK 67 PFV ++ + + YY G R+IR M L +EYI RK Sbjct: 4 PFVNEKTKKWDFVFGYYDETGKRRQIRRKGFKTKREANDKMIELQNDVKNKEYI---RKD 60 Query: 68 PTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITT---KHIRSGV 123 TTL + + + + + + YF + I K G + ++ + + Sbjct: 61 NTTLNEFMDYWLDNIRVHECGETTLYNNKLYFKNHIKPKLGKIKLQNFDLLKCQNFVNEL 120 Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 + ++ + T ++ +F A+ ++ NP V PKR + + WT E + F Sbjct: 121 YKKNFARNTIDRITTMVKKVFDKAIEYGFIKENPMRKVTLPKRVKKEMSIWTLEQVNHFL 180 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQ--------KTGTII 233 E + + L +G+R + + + + +IK K+G Sbjct: 181 QCTKE-DRYHCVYGLALLAGMRQGEILGLRWKDIDFKSKTITIKQTLAHYGTRIKSGAKT 239 Query: 234 T-----VELPDGFMKLLAMTPIGKETF-------------------FINNDKQKMNATQF 269 T + +P+ + +L E + F + + + Sbjct: 240 TAGERKISIPNQLIAILEEQRRLHEVYKVKWKREFGDAFIDMDIVIFNLKNGKTVFPANL 299 Query: 270 SIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324 S +K A + H +R AT+ + + G + +TY+ Sbjct: 300 SKAYKKDVISAKLPHIRFHDMRHTHATMLLEKKMNVKVISERLGHSKISVTLDTYSH 356 >gi|149376980|ref|ZP_01894734.1| tyrosine recombinase XerC [Marinobacter algicola DG893] gi|149358757|gb|EDM47227.1| tyrosine recombinase XerC [Marinobacter algicola DG893] Length = 317 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 34/268 (12%), Positives = 78/268 (29%), Gaps = 22/268 (8%) Query: 77 EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD------YRKITTKHIRSGVESRKHTP 130 Y S + + S+ + + + + Sbjct: 23 RYLASEKRH--SPRTCDSYRDDLKRFAVWVEHQPSPAWRSVTSHDLRRYVAQLSREGLGG 80 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 S + L+++R +++ +R+ NP L + PK R + + + Sbjct: 81 RSIARHLSAIRRFYEYLLREHLAVDNPALDIRAPKSGKRLPRVADVDQLNHLLDAAPDDP 140 Query: 191 ---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------ELP 238 + FE + SGLR S+ +Q + ++ G + L Sbjct: 141 LEIRDLSMFELMYSSGLRLSELAGLDLQSVDVRGGEVRVLGKGRKERLLPVGRRALEALA 200 Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATI 296 AM P G+ +++ +++ G ++ H +R A+ Sbjct: 201 QWLEVRGAMAPDGENALYVSRRGDRLSTRSIQSRLSRWGMSKGADQRLHPHLLRHSFASH 260 Query: 297 SADAGATAHELMATYGWKTVDQAETYTK 324 ++ + G + + YT Sbjct: 261 MLESSGDLRAVQELLGHADIATTQVYTH 288 >gi|150397765|ref|YP_001328232.1| site-specific tyrosine recombinase XerD [Sinorhizobium medicae WSM419] gi|150029280|gb|ABR61397.1| tyrosine recombinase XerD [Sinorhizobium medicae WSM419] Length = 313 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 46/270 (17%), Positives = 88/270 (32%), Gaps = 30/270 (11%) Query: 85 GSLAVNSRISFESYFDQII-----RKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139 AVN+ S+E R G D + S + SS + L++ Sbjct: 20 RGAAVNTLQSYERDLRDARSFLRSRGVGLVDASADDLRSYLSHLTGEGFKSSSQARRLSA 79 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF----KSFWSEG------ 189 +R +K+ + P ++ PK+ + + ED+ + ++ +G Sbjct: 80 LRQFYKFLYAEGLRTDEPTGILDAPKKNRALPKTLSIEDVTRLIGQAETEAEKGGEDAVA 139 Query: 190 -SQPRLAFEFLLYSGLRCSDSCRAGVQHL-QNNIFSIKTQKTGTIITVELPDGFMKLLAM 247 + E L +G+R S+ L Q+ F I K V L ++ + Sbjct: 140 KLRMHALIELLYATGMRVSELVSLPASVLAQDGRFLIIRGKGNKERLVPLSQTAIRAMRA 199 Query: 248 --------TPIGKETFFINNDKQK--MNATQFSIWFKAKATKAGVNK---SAHGVRKFSA 294 + + + + F+ K+ A +AG+ S H +R A Sbjct: 200 YGQALHREADGADSPWLFPSYGRNGYLPRQVFARDLKSLAARAGIRVAAISPHVLRHAFA 259 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTK 324 + GA + G + + YT Sbjct: 260 SHLLANGADLRAVQELLGHSDISTTQIYTH 289 >gi|254521772|ref|ZP_05133827.1| tyrosine recombinase XerC [Stenotrophomonas sp. SKA14] gi|219719363|gb|EED37888.1| tyrosine recombinase XerC [Stenotrophomonas sp. SKA14] Length = 296 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 34/255 (13%), Positives = 80/255 (31%), Gaps = 15/255 (5%) Query: 85 GSLAVNSRISFESYFDQII-----RKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139 ++ ++ ++ D + R T + + R + S + L++ Sbjct: 15 RRMSAHTLDAYRRDLDALSVWAEPRGMAVEALDAETLRQFVADEHRRGLSAKSLQRRLSA 74 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS---QPRLAF 196 R + W ++ + ++P +++ P+ + ++ Q EG + R Sbjct: 75 CRSFYAWLLKHGRIEVSPAATLKAPRAPRRLPQVLDADEAVQLVELEPEGELGRRDRALL 134 Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT-----VELPDGFMKLLAMTPIG 251 E SGLR S+ C + L + G + A + G Sbjct: 135 ELFYSSGLRLSEVCALTWRDLDFASGLVNVMGKGNRQRRVPFGRPAREALQAWRAESGGG 194 Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMA 309 + ++ I + A + G+ + H +R A+ ++ + Sbjct: 195 PASPVFPGRNGPISQRAVQIRIRQLAQRQGLFKHVHPHMLRHSFASHILESSGDLRGVQE 254 Query: 310 TYGWKTVDQAETYTK 324 G + + YT Sbjct: 255 LLGHADIATTQIYTH 269 >gi|153000209|ref|YP_001365890.1| phage integrase family protein [Shewanella baltica OS185] gi|151364827|gb|ABS07827.1| phage integrase family protein [Shewanella baltica OS185] Length = 287 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 42/267 (15%), Positives = 88/267 (32%), Gaps = 21/267 (7%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE----SRK 127 L+ ++ + +R ++ Q+ + + IT + + + R Sbjct: 2 SSLLQQFHDEISLRGYSARTRSAYLRAITQL-QHYANQPLDSITDEQLTAYFRYLNLERH 60 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 H+ ++ L + ++ + +++ + + PKR + + + +D+ Sbjct: 61 HSRATLKLQLNGIHFFYEHVLGRDF-----TVQLSLPKRPHKLPQLLSCQDIAALL-CHC 114 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLL 245 + + R GLR S+ V + +K K V + + LL Sbjct: 115 QNLKQRAMLALCYGCGLRVSELTHIKVADIDGQRQLLKVCQGKGAYDRLVIISPTLLTLL 174 Query: 246 A---MTPIGKETFFINNDK---QKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATIS 297 E F + ++ + F A AG+ S H +R AT Sbjct: 175 RQYWRAYHPVEWLFASTYHDVVYPLHESTFRKALAKAARLAGITKPCSPHSLRHAYATHQ 234 Query: 298 ADAGATAHELMATYGWKTVDQAETYTK 324 AG H+L A G ++ E Y Sbjct: 235 LQAGMPLHQLQAQLGHHSIKSTERYLH 261 >gi|86141544|ref|ZP_01060090.1| mobilizable transposon, int protein [Leeuwenhoekiella blandensis MED217] gi|85832103|gb|EAQ50558.1| mobilizable transposon, int protein [Leeuwenhoekiella blandensis MED217] Length = 398 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 39/204 (19%), Positives = 65/204 (31%), Gaps = 16/204 (7%) Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193 +F ++R A Y N +V+ T E++Q + + Sbjct: 192 NKFKAALRQ----AFEDGYTNRNYATAVKGFAMGETTREYLTYEELQNLAKAECKHQMLK 247 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQKTGTIITVELPDGFMKLLAMTP 249 AF F +GLR SD + +++ K +KT L D +L Sbjct: 248 NAFLFSCLTGLRWSDVNKLTWSEVRDEEEGSRLVFKQKKTAAQEYQYLSDQARSILGDRK 307 Query: 250 IGKETFFIN-NDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHE 306 F NA +AG+ K + H R A + + GA + Sbjct: 308 QENARVFQGLKYGAHFNAE-----ILRWCMRAGITKHITFHSARHTHAVLLLEHGADIYT 362 Query: 307 LMATYGWKTVDQAETYTKGADRIR 330 + G K + + Y K D + Sbjct: 363 VSKILGHKEIRTTQIYAKIVDTKK 386 >gi|300741394|ref|ZP_07071415.1| putative tyrosine recombinase XerC [Rothia dentocariosa M567] gi|300380579|gb|EFJ77141.1| putative tyrosine recombinase XerC [Rothia dentocariosa M567] Length = 339 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 52/293 (17%), Positives = 91/293 (31%), Gaps = 34/293 (11%) Query: 76 SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF---DYRKITTKHIRSGVESRKHTPSS 132 Y + + + + S+ S G I + IR + S ++ Sbjct: 45 ERYLRYEKYR--SEETIRSYISDLYGFFGFIGRRGISRVEDINLQLIREWLGSMHLKQNA 102 Query: 133 ---AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 + +++R F WA +E + NP + PKR ++E M + Sbjct: 103 KTTVARRGSTLRTFFSWAHEEELITENPTRGMSTPKRDRHLPAVLSQEQMSSVLDTVALR 162 Query: 190 SQP--------RLA--FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELP 238 + RL E L SG+R S+ + + +++ K V L Sbjct: 163 CRENPQDIRMLRLWAVLEVLYSSGMRISELTGLNLSSIDRANKTVRVIGKGNKERVVPLG 222 Query: 239 DGFMK------------LLAMTPIGKETFFINNDKQKMNATQFSIWFKA--KATKAGVNK 284 MK +A FI ++ N Q + + Sbjct: 223 TPAMKVLSQWVKIGRPYWIAKGSRDVTALFIGPRGKRANPRQIREDISRILRTLEDTEVS 282 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 AH +R +AT D GA + G ++ + YT RL +R Sbjct: 283 GAHVLRHSAATHLVDGGADIRTVQELLGHASLSTTQIYTH-VSMKRLADTYTR 334 >gi|254491767|ref|ZP_05104946.1| site-specific recombinase, phage integrase family protein [Methylophaga thiooxidans DMS010] gi|224463245|gb|EEF79515.1| site-specific recombinase, phage integrase family protein [Methylophaga thiooxydans DMS010] Length = 409 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 38/253 (15%), Positives = 81/253 (32%), Gaps = 39/253 (15%) Query: 111 YRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170 + RS + S++ +++ +++ +F AV E + NP V++ K Sbjct: 145 VTAWDIESWRSKRHKDGLSASTSNRYIGTLKAMFNRAVEWEVIEQNPITKVKKQKSDNRA 204 Query: 171 -IRPWTKEDMQQFKS--------------FWSEG-------------SQPRLAFEFLLYS 202 IR + ++ ++ ++ F+++G L+ + Sbjct: 205 IIRYLSPDEEERLRASLRSRDRRLTQSNPFYADGRFTRLETILGGFQDHVHPMVLLLMNT 264 Query: 203 GLRCSDSCRAGVQHLQNNIFSIK----TQKTGTIITVELP----DGFMKLLAMTPIGKET 254 G+R + Q + N I T KTG + L + T Sbjct: 265 GMRRGEMFNLRWQDVDLNNKRITIVGNTSKTGQTRYIPLNVEAFNVLQMWSKQTKRNAGH 324 Query: 255 FFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGW 313 F+ + ++ +K A + + H +R A+ AG + + G Sbjct: 325 VFVGKNGKRFT--NIDKAWKVLLRDAKIHDFRLHDLRHHFASRLVSAGIDLNSVRELLGH 382 Query: 314 KTVDQAETYTKGA 326 + Y A Sbjct: 383 SDIKMTLRYAHLA 395 >gi|167462689|ref|ZP_02327778.1| DNA integration/recombination/invertion protein [Paenibacillus larvae subsp. larvae BRL-230010] gi|322384964|ref|ZP_08058620.1| phage integrase-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321150261|gb|EFX43768.1| phage integrase-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 410 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 46/312 (14%), Positives = 106/312 (33%), Gaps = 55/312 (17%) Query: 86 SLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVE------SRKHTP------SS 132 +L+ + ++ S+FD I G I T H+ + ++ +RK + Sbjct: 93 NLSPLTFRNYVSHFDTHISPSLGHKHLGDIKTLHVVTFIDDLGKPGARKDGKEGRLSNGT 152 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192 ++ + + A + +NP + V++PK I ++++ + + +P Sbjct: 153 IQYIYRVLKNILERAKEWGLIKVNPIIGVKKPKVGRPEIHF--YDEVEAQEVISALDKEP 210 Query: 193 RLAFEFLLYS---GLRCSDSCRAGVQHLQNNIFSIKTQK-----------------TGTI 232 R F+L S G R + + + ++ K +I Sbjct: 211 RTWRLFILGSMIGGFRRGELLALEWTDVDFDNMTLSINKSISLTVDGHAVEKEPKSKSSI 270 Query: 233 ITVELPDGFMKLLAM----------------TPIGKETFFINNDKQKMNATQFSIWFKAK 276 V++P+ +M L + K+ F + + T + W+ Sbjct: 271 RIVDMPEWYMDELKIHKHEWKKEKLFVGDKWRGGDKQYVFHAGFGKPLYHTYPTQWWGEF 330 Query: 277 ATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKT-VDQAETYTKGADRIRLGIK 334 + + + H +R SAT+ +AGA+ + G A+ Y ++ + Sbjct: 331 IKRHNLKRVRFHDLRHSSATLLIEAGASMKAIQERLGHSKHQTTADIYAHIT--KKVSRE 388 Query: 335 NSRRISSVVDSD 346 + + + Sbjct: 389 TAEKFDKFAPKN 400 >gi|313898869|ref|ZP_07832402.1| site-specific recombinase, phage integrase family [Clostridium sp. HGF2] gi|312956333|gb|EFR37968.1| site-specific recombinase, phage integrase family [Clostridium sp. HGF2] Length = 368 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 66/358 (18%), Positives = 124/358 (34%), Gaps = 62/358 (17%) Query: 16 TRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP----------- 64 R+GK +Y R +++L Y G K+E + Sbjct: 5 KRNGK--WYIR----GKVKLEDGS----FKDYHRVARGCKLKKEAMKIEDSFLAKYNEDL 54 Query: 65 ---RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121 R T K L Y + GS ++ + + FDQ+ D I +K I+ Sbjct: 55 EQMRASNITFKELTEMYLREKQ-GSTKSSTLATDKYMFDQMNELY-DKRINLIRSKTIKD 112 Query: 122 GVESRKHTP----SSAIQFLTSMRVLFKWAVRQEYVAINPCLSV---ERPKRKTEGIRPW 174 +ES +TP S + T + LF +AV+Q + NP S+ +RP E ++ + Sbjct: 113 FIESY-NTPEYKLSYVNKMRTYLNKLFSFAVKQNLIERNPVSSIPNFKRPDELKEEMQFY 171 Query: 175 TKEDMQQFKSFWSEGSQPR-LAFEFLLYSGLRCSDSCRAGVQH----------------- 216 T ++ ++F + + L Y G+R + + Sbjct: 172 TPDEWKRFVQAFPKDDIMYYTICCTLYYMGMRRGEVLALNRKDDVDIVKGTIRVNKTVSQ 231 Query: 217 -LQNNIFSIKTQKTGTI-ITVELPDG-------FMKLLAMTPIGKETFFINNDKQKMNAT 267 + + + KT +++P+ +++ P F+ Q + Sbjct: 232 YVSGQRYVVTPPKTKNSYRVIKMPEEELQIMKKYLEWYDSCPGASADGFLFGMDQPIIPK 291 Query: 268 QFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 + F A AG+ + H +R AT+ + GA + G + +TY+ Sbjct: 292 LLNKRFHRVADAAGLPQIRIHDLRHSHATLLINHGANIKAIADRLGNTVEEVLKTYSH 349 >gi|219646794|gb|ACL30946.1| integrase [Integrating expression vector pJEB403+drrA] Length = 332 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 53/319 (16%), Positives = 111/319 (34%), Gaps = 41/319 (12%) Query: 54 STPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYR 112 K+ ++ + T KWL+ LA +R + + ++ I G+ Sbjct: 24 DRAKKAAASAITLEEYTRKWLVER--------DLADGTRDLYSGHAERRIYPVLGEVAVT 75 Query: 113 KITTKHIRSGVESRKHT-PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171 ++T +R+ P++ +R + AV + +A NPC +E+ + Sbjct: 76 EMTPALVRAWWAGMGRKHPTARRHAYNVLRAVMNTAVEDKLIAENPCR-IEQKAADERDV 134 Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKT 229 T E++ + R+A L ++ LR + + + ++ ++ Sbjct: 135 EALTPEELDIVAA--EIFEHYRIAAYILAWTSLRFGELIELRRKDIVHDGMTMKLRVRRG 192 Query: 230 GTII----------------TVELPDGFMKLLAMTPIGK-------ETFFINN-DKQKMN 265 + + V +P +++ + E F + +++ Sbjct: 193 ASRVGNKIVVGNAKTVRSKRPVTVPPHVAEMIRAHMKDRTKMNKGPEAFLVTTTQGNRLS 252 Query: 266 ATQFSIWFKA-KATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 + F+ K A H +R AT +A AGAT ELMA G T A Y Sbjct: 253 KSAFTKSLKRGYAKIGRPELRIHDLRAVGATFAAQAGATTKELMARLGHTTPRMAMKYQM 312 Query: 325 GAD-RIRLGIKNSRRISSV 342 ++ R + +++ Sbjct: 313 ASEARDEAIAEAMSKLAKT 331 >gi|205373364|ref|ZP_03226168.1| tyrosine recombinase xerC [Bacillus coahuilensis m4-4] Length = 250 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 32/232 (13%), Positives = 80/232 (34%), Gaps = 16/232 (6%) Query: 109 FDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168 D + + + + +K+ S+ + ++S++ +K+ +++ + NP V PK++ Sbjct: 2 VDIEYLDARLYLTDLYDKKYARSTVSRKVSSLKSFYKFLTKEDKLDENPFSLVFHPKQEK 61 Query: 169 EGIRPWTKEDMQQFKSFWSEGSQ----PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224 + +E++++ + E L +G+R S+ ++ + + ++ Sbjct: 62 RLPNFFYEEEIERLFDACKGDTHKDIRNLALLELLYATGIRVSECSNLSLKDIDFSFHTV 121 Query: 225 -KTQKTGTIITVELPDGFMKLLAM---------TPIGKETFFINNDKQKMNATQFSIWFK 274 T K V + + + F+N + Sbjct: 122 LVTGKGRKERYVPFGTYASEAIKRYLDHTRHVLVKGEHQQLFVNLKGGPLTDRGIRHILN 181 Query: 275 AKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 ++A + H +R AT GA + G + +TYT Sbjct: 182 DVISRASLTHKIHPHMLRHTFATHLLSNGADLRSVQELLGHSHLSSTQTYTH 233 >gi|237729903|ref|ZP_04560384.1| phage integrase [Citrobacter sp. 30_2] gi|226908509|gb|EEH94427.1| phage integrase [Citrobacter sp. 30_2] Length = 284 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 43/258 (16%), Positives = 95/258 (36%), Gaps = 18/258 (6%) Query: 82 AHWGSLAVNSRISFESYF----DQIIRKSGDFDYRKITTKHIRSGVESR-KHTPSSAIQF 136 + A+ + S+ S + I+ + G+ + +I + I + + PS+ + Sbjct: 8 PDYIKYALIHKKSYTSDLSKVKNYILPRLGNAELHEINRRDIATYIHGLDGLKPSTRNRH 67 Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA- 195 L ++ +F WAV Y+ ++P ++ + R E+ F + Sbjct: 68 LALLKAVFSWAVEYNYLEVSPAAGIKAFREPASLRRAMEPEEFSVFIRVLKAEIKDENRD 127 Query: 196 ----FEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMTP 249 L ++G+R ++ A ++ L N ++ K+G V L M+++ Sbjct: 128 TLQLLGLLAFTGMRLGEARSACIEDLNLTRNTLFLRDTKSGDSRLVPLCGEAMEIVCAQL 187 Query: 250 IGK---ETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAH 305 + F + K+ + K KAG+ + H +R + + A + Sbjct: 188 MKHGNQGLLFRSAHGTKVAEPRR--LMKKICEKAGIVPFTIHELRYTAGSAMLAATRDLY 245 Query: 306 ELMATYGWKTVDQAETYT 323 + G K + +E Y Sbjct: 246 AVKRFLGHKCLSTSERYA 263 >gi|78777445|ref|YP_393760.1| Phage integrase [Sulfurimonas denitrificans DSM 1251] gi|78497985|gb|ABB44525.1| tyrosine recombinase XerD subunit [Sulfurimonas denitrificans DSM 1251] Length = 278 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 37/252 (14%), Positives = 82/252 (32%), Gaps = 17/252 (6%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLF 144 +L+ S ++ QI + + +K + + + K+ + + L+S+ F Sbjct: 16 KALSRKSVDAYTCDLKQIELAL-NKPLISLDSKTLFNLLSEYKNK-RTLNRKLSSVNAFF 73 Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRLAFEFLL 200 + + ++V V+ K + + + +Q S G + FL Sbjct: 74 DFCYKNQFVDE--KKKVKFSKIPKLLPKFLSYQQIQNALSQVDRSSVLGLRDYAMIIFLY 131 Query: 201 YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM----TPIGKETFF 256 +G R S+ + ++ I+ K V + + KE + Sbjct: 132 ATGARISECLALRREDIEGEWLHIRHAKGEKERIVPIAFVAKTAVDAYMNELKKTKEYVW 191 Query: 257 INNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTV 316 N +K++ + + S H +R AT GA + G ++ Sbjct: 192 SNYKGEKLSRISAYKITQKY-----LGVSPHVLRHSYATALIAGGADLRVVQELLGHSSL 246 Query: 317 DQAETYTKGADR 328 + YT + Sbjct: 247 LTTQIYTHIQKQ 258 >gi|187735871|ref|YP_001877983.1| integrase family protein [Akkermansia muciniphila ATCC BAA-835] gi|187425923|gb|ACD05202.1| integrase family protein [Akkermansia muciniphila ATCC BAA-835] Length = 416 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 59/319 (18%), Positives = 106/319 (33%), Gaps = 43/319 (13%) Query: 44 IPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII 103 +PAY S E + P+ WL R+ L S +++ FD+ Sbjct: 83 LPAYQLRRAISALSTELTGESMEMPSVKLWLDDHMRRITR-NGLKPASIANYKQAFDKFR 141 Query: 104 RKSGD---FDYRKITTKHIRSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPC 158 G+ +IT + + +PS+A LT + F+ AV + + NP Sbjct: 142 ASMGERINLPLDRITPLMLDDFKNHLLSRVSPSTANIALTLVSAAFQAAVDYKIIETNPF 201 Query: 159 LSVERP-KRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSG-LRCSDSCRAGVQH 216 ++ +P K K R + E++++ + + R + LY+G R D Sbjct: 202 TAITKPHKGKAVKRRKFELEELEKVMAAC--NPEWRSMVKTCLYTGGQRLGDVATLRWSQ 259 Query: 217 LQN--NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFIN--------NDKQKMNA 266 + + + TQK G + + + K L F++ + + Sbjct: 260 VDEKRGVIRMTTQKKGKPLMIPIFPALKKHLQQRKKEAPGDFLHPECANIFESKGSGRLS 319 Query: 267 TQFSIWF--------------KAKATKAGVN---------KSAHGVRKFSATISADAGAT 303 FS K + G S H +R + T+ DAG Sbjct: 320 NIFSHILYQCGLIAKDPLAAGKKYKKQEGNGTETRRHVNELSFHSLRYTATTMLHDAGVP 379 Query: 304 AHELMATYGWKTVDQAETY 322 + A G + + E Y Sbjct: 380 PALVQAIVGHDSREVHEGY 398 >gi|127511928|ref|YP_001093125.1| phage integrase family protein [Shewanella loihica PV-4] gi|126637223|gb|ABO22866.1| phage integrase family protein [Shewanella loihica PV-4] Length = 324 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 67/337 (19%), Positives = 117/337 (34%), Gaps = 39/337 (11%) Query: 7 LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66 LPP V + R G YYF G+ I+L + + Y + + G Sbjct: 11 LPPKVYQ---RSGS--YYFVDKDGKWIKLASSY-PEAMVKY-AEIVGDVGNL-------- 55 Query: 67 KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126 T+ L+ Y + + + + + + GD ++T +HI ++ R Sbjct: 56 --VTVSDLLDRYLREVAPLKAEASYKSNL-AQSKFLRAGLGDIRVDELTPRHIYQYMDVR 112 Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 K + + + + + K+A+R + NPC SV R K +T R ++ + F+ F Sbjct: 113 GKKGKTQTNREIAMLSHMLKYAIRWGLIDHNPCRSVMRFK-ETPRDRYIEDKEYKAFRDF 171 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245 G +F L +GLR SD + L+ + + KT I + D + Sbjct: 172 --AGPLIAAYMDFKLLTGLRKSDILKLRRDALKEDGIHVLINKTKRKIIISWSDHLRAAV 229 Query: 246 AM-----TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK------SAHGVRKFSA 294 PI F Q FS ++ K KA + H VR + Sbjct: 230 QAIKDLPRPINSIYLFSTRKGQPYTTDGFSSIWQRKMVKAMEKGILTERFTDHDVRAKTG 289 Query: 295 TISADAGATAHELMATYGWKTVDQAE-TYTKGADRIR 330 + + AT + Y + +R Sbjct: 290 SDAELEHAT-----RLLAHLDAKVTQKHYRRKTAVVR 321 >gi|198276324|ref|ZP_03208855.1| hypothetical protein BACPLE_02519 [Bacteroides plebeius DSM 17135] gi|198270766|gb|EDY95036.1| hypothetical protein BACPLE_02519 [Bacteroides plebeius DSM 17135] Length = 376 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 42/232 (18%), Positives = 84/232 (36%), Gaps = 23/232 (9%) Query: 127 KHTPSSA---IQFLTSMRVLFKWAVRQEYVAINP---CLSVERPKRKTEGIRPWTKEDMQ 180 K P +A + AVR + + NP E+PK T E+++ Sbjct: 154 KGKPIAASTRNTYYQIFNGALNAAVRAKRLLRNPFNEMEKSEKPKMPESVRSYMTIEEVR 213 Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT----QKTGTIITVE 236 + + + + A+ F + GLR SD +++ + + QKT I + Sbjct: 214 ALIATPMQEGRVKNAYLFSCFCGLRISDIVGLKWKNVFVDNGQYRLAVAMQKTKEPIYLP 273 Query: 237 LPDGFMKLL--AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKF 292 L + +K + + F + + + + A AG+ K + H R Sbjct: 274 LSNEALKWMPEREDKAADDPVFNL-------PSNINQYLRPWAEAAGITKRFTFHTARHT 326 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344 AT+ GA + + G +V + Y K ++ + + ++ + D Sbjct: 327 FATMMLTLGADLYTVSKLLGHTSVRMTQVYAKIINQKK--DEAVNLVNGLFD 376 >gi|315633490|ref|ZP_07888780.1| tyrosine recombinase XerC [Aggregatibacter segnis ATCC 33393] gi|315477532|gb|EFU68274.1| tyrosine recombinase XerC [Aggregatibacter segnis ATCC 33393] Length = 296 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 36/261 (13%), Positives = 89/261 (34%), Gaps = 22/261 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRK-----ITTKHIRSGVESRKH--TPSSAIQFL 137 ++ ++ +++ ++I D ++ ++ S++ S L Sbjct: 16 RQVSPHTLTNYQHQLVRVIAILQDAGIQQWQQVTLSVVRYVLAQSSKQDGLKEKSLALRL 75 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS---FWSEGSQPRL 194 +++R + V Q + +NP + V PK+ + ++ +Q + + R Sbjct: 76 SALRRFLSYLVYQGQLKVNPAVGVSAPKQPKHLPKNIDRDQIQLLLANDSKEPIDIRDRA 135 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------ELPDGFMKLL 245 E SGLR S+ + + + ++ G + + L Sbjct: 136 MIELFYSSGLRLSELQGLNLNSINLRVREVRVIGKGNKERIVPLGRYASHAIQQWLKVRL 195 Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGAT 303 P + F++ +M+ + + + G+N + H +R AT +A + Sbjct: 196 LFNP-KDDALFVSQLGNRMSTRTIQMRLERWGIRQGLNSHLNPHKLRHSFATHMLEASSD 254 Query: 304 AHELMATYGWKTVDQAETYTK 324 + G + + YT Sbjct: 255 LRAVQELLGHSHLSTTQIYTH 275 >gi|218129441|ref|ZP_03458245.1| hypothetical protein BACEGG_01018 [Bacteroides eggerthii DSM 20697] gi|254881363|ref|ZP_05254073.1| tyrosine type site-specific recombinase [Bacteroides sp. 4_3_47FAA] gi|313145864|ref|ZP_07808057.1| integrase [Bacteroides fragilis 3_1_12] gi|317476187|ref|ZP_07935438.1| phage integrase [Bacteroides eggerthii 1_2_48FAA] gi|217988171|gb|EEC54494.1| hypothetical protein BACEGG_01018 [Bacteroides eggerthii DSM 20697] gi|254834156|gb|EET14465.1| tyrosine type site-specific recombinase [Bacteroides sp. 4_3_47FAA] gi|313134631|gb|EFR51991.1| integrase [Bacteroides fragilis 3_1_12] gi|316907598|gb|EFV29301.1| phage integrase [Bacteroides eggerthii 1_2_48FAA] Length = 376 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 42/232 (18%), Positives = 84/232 (36%), Gaps = 23/232 (9%) Query: 127 KHTPSSA---IQFLTSMRVLFKWAVRQEYVAINP---CLSVERPKRKTEGIRPWTKEDMQ 180 K P +A + AVR + + NP E+PK T E+++ Sbjct: 154 KGKPIAASTRNTYYQIFNGALNAAVRAKRLLRNPFNEMEKSEKPKMPESVRSYMTIEEVR 213 Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT----QKTGTIITVE 236 + + + + A+ F + GLR SD +++ + + QKT I + Sbjct: 214 ALIATPMQEGRVKNAYLFSCFCGLRISDIVGLKWKNVFVDNGQYRLAVAMQKTKEPIYLP 273 Query: 237 LPDGFMKLL--AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKF 292 L + +K + + F + + + + A AG+ K + H R Sbjct: 274 LSNEALKWMPEREDKAADDPVFNL-------PSNINQYLRPWAEAAGITKRFTFHTARHT 326 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344 AT+ GA + + G +V + Y K ++ + + ++ + D Sbjct: 327 FATMMLTLGADLYTVSKLLGHTSVRMTQVYAKIINQKK--DEAVNLVNGLFD 376 >gi|229918620|ref|YP_002887266.1| integrase family protein [Exiguobacterium sp. AT1b] gi|229470049|gb|ACQ71821.1| integrase family protein [Exiguobacterium sp. AT1b] Length = 293 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 43/262 (16%), Positives = 88/262 (33%), Gaps = 25/262 (9%) Query: 85 GSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMR 141 L+ +++ S+E D + + Y T + + ++ S+ Q ++ + Sbjct: 18 RRLSPHTKRSYEQTLDQYAAYCQSTHQDPYDAQTARRYLYVLYEKQLAASTVSQKVSCFK 77 Query: 142 VLFKWAVRQEYVAINP-CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL------ 194 K+ R++ P + PK+K +++Q S P L Sbjct: 78 QFGKFMAREQGGE--PLFHDLTSPKKKQSLPTFAVPTEVEQLLEAASRQDDPFLQARDVA 135 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAM------ 247 E L +G+R ++ C + + + K V + ++ L Sbjct: 136 IIEVLYGTGIRVAELCGMNLSSFDEVLSFVHVMGKGKKERYVPIGQYAVQALQRYIELRK 195 Query: 248 ---TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302 P F++ +M Q K +GV+K + H +R AT + GA Sbjct: 196 GVGLPTET-ALFLSQKGNRMTTDQIRYVMKRLRKDSGVHKPLTPHSLRHSFATDLLERGA 254 Query: 303 TAHELMATYGWKTVDQAETYTK 324 + G +++ YT Sbjct: 255 DLRAVQELLGHESLSTTGRYTH 276 >gi|158339285|ref|YP_001520462.1| phage integrase [Acaryochloris marina MBIC11017] gi|158309526|gb|ABW31143.1| phage integrase [Acaryochloris marina MBIC11017] Length = 335 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 53/290 (18%), Positives = 105/290 (36%), Gaps = 32/290 (11%) Query: 62 NSPRKKPTTLKWL-ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120 P+ P L+W+ + E+ +S ++ N+R ++E Q + D + +IT + + Sbjct: 27 QPPKTTPADLRWMRVEEFMRS---REISSNTRKAYERDLKQFMD-WTDKGWHEITARDLD 82 Query: 121 SGVESRKHTP---------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171 K P ++ + L +++ FKW ++Y+ +P L +E+ K Sbjct: 83 RYKNYLKVEPNQRGQLRKNATINRNLAALQGFFKWLTVRDYITKDPTLLLEKLKSDPVLP 142 Query: 172 RPWTKEDMQQ-FKSFWSEGSQPRLAFEF--LLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228 + ++++++ +++ G L+ GLR S+ R V +I+ K Sbjct: 143 QEFSQDEVDNLYQAICDRGFHAFRDRALLHLIDHGLRASEIHRLNVGDYDGQRITIRVAK 202 Query: 229 TGTIITVELPDGFMKLLAMTP----------IGKETFFI----NNDKQKMNATQFSIWFK 274 ++ TV L K + F+ N+ Q++ FK Sbjct: 203 ADSVGTVPLLKKARKAIDQYKQWREQQGDALGNDSPLFVSHSNNSKGQRLQYWGIYKIFK 262 Query: 275 AKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 A A A V N H R AT + + Y+ Sbjct: 263 AIAEIAEVENAHPHRGRHTLATRLVMKDMDSVLARRITRHASEQSFVRYS 312 >gi|307942817|ref|ZP_07658162.1| tyrosine recombinase XerC [Roseibium sp. TrichSKD4] gi|307773613|gb|EFO32829.1| tyrosine recombinase XerC [Roseibium sp. TrichSKD4] Length = 320 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 45/273 (16%), Positives = 89/273 (32%), Gaps = 30/273 (10%) Query: 82 AHWGSLAVNSRISFESYFDQIIRKS-GD-------FDYRKITTKHIRSGVESR----KHT 129 A LA + +S+E Q +R G D ++ RS + R K Sbjct: 29 ADERRLADKTLVSYERDVRQFLRFLTGHLGGAPCVKDLGELRPADYRSFLAKRRQADKAG 88 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ-------F 182 S + L+ +R ++ ++ + +V P+ +P T D ++ Sbjct: 89 SRSLARGLSGVRSFLRFLEKRGELNAAAIGAVRPPRIAQSLPKPLTVPDAEEIVSGDLGL 148 Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRA-GVQHLQNNIFSIK-TQKTGTIITVELPDG 240 +S ++ L GLR S++ G + + +++ T K G V + Sbjct: 149 ESETWIETRNMAVLTLLYGCGLRISEALSLTGRTAPKGDARTMRITGKGGKERLVPMLPV 208 Query: 241 FMKLLAM-------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRK 291 + + F+ +N + + G+ SA H +R Sbjct: 209 VTQAIETYIAQCPYPITANGPLFLGARGGALNPRLIQKAMEKMRSALGLPASATPHALRH 268 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTK 324 AT G + G ++ + YT+ Sbjct: 269 SFATHLLAGGGDLRTIQELMGHASLSSTQIYTQ 301 >gi|307546851|ref|YP_003899330.1| integrase/recombinase XerC [Halomonas elongata DSM 2581] gi|307218875|emb|CBV44145.1| K03733 integrase/recombinase XerC [Halomonas elongata DSM 2581] Length = 308 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 37/257 (14%), Positives = 79/257 (30%), Gaps = 21/257 (8%) Query: 88 AVNSRISFESYFDQIIRKSGDFDYRKITT------KHIRSGVESRKHTPSSAIQFLTSMR 141 + + ++ ++ D + G SR P S + ++ Sbjct: 27 SPATVDAYRRDLAALLDFLDRHDIGDPAALDAALLRRFLGGERSRGLAPRSLARRRAALS 86 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLAFE 197 + + Y+ NP V P+ + RP + + +F +GS + + E Sbjct: 87 RFAEHLMACGYLDHNPVSLVRTPRVPRDLPRPVDVDALARFLDTPHDGSPLACRDQAMLE 146 Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE--------LPDGFMKLLAMTP 249 SGLR ++ + + + K G V L D A+ Sbjct: 147 LFYSSGLRLAELAALDLDDIHARRVRV-LGKGGKPRQVPVGRRADQALTDWLSLRGALAA 205 Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHEL 307 G+ F+ ++ + A G+ + H +R A+ ++ + Sbjct: 206 DGEPALFVGARGNRLGHRAIQQRMRQLALTRGLAEHLHPHRLRHSFASHLLESSQDLRAV 265 Query: 308 MATYGWKTVDQAETYTK 324 G + + YT+ Sbjct: 266 QELLGHANLSTTQVYTR 282 >gi|301312479|ref|ZP_07218393.1| tyrosine recombinase XerD [Bacteroides sp. 20_3] gi|300829545|gb|EFK60201.1| tyrosine recombinase XerD [Bacteroides sp. 20_3] Length = 314 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 46/306 (15%), Positives = 106/306 (34%), Gaps = 36/306 (11%) Query: 67 KPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125 + T ++ +IS++ + +L + ++ S R + + + + +++ Sbjct: 5 RKTAVEQVISDFLFHCQYEKNLNEKTIYAYRSDLYMFNRYIHELYPSVVFEQVSKDMLKT 64 Query: 126 R-----KHTPSSAIQFLTSMRVLFKWAVRQEYVAI-NPCLSVE-RPKRKTEGIRPWTKED 178 + P + + L S++ LF + E+ NP + R K T + Sbjct: 65 YLQHISTYKPKTVKRKLASLKALFNY-YDFEHDDFLNPFRKLRIRFKEPYVLPTVMTCNE 123 Query: 179 MQQFKSF---------------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS 223 +++ + + ++ E L +G+R S+ C + + Sbjct: 124 VKEILKYLYKLRADNPDTGGYAYKAQTRDIAVVELLFATGIRVSELCELSCDAVDLKQAT 183 Query: 224 IKTQKTGTIITV------ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKA 277 IK G+ V E+ + + K FFIN ++++ + K Sbjct: 184 IKVFGKGSKERVIQICSVEVLKILRQYQRLFAPSK-CFFINRLGNRLSSQSVRLLIKRCR 242 Query: 278 TKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK---GADRIRLG 332 + G+ K + H R AT+ + + G ++ + YT + L Sbjct: 243 EEIGIGKKITPHTFRHTFATLLLEEDVDIKYIQNLLGHSSITTTQIYTHVNMNKQKKILS 302 Query: 333 IKNSRR 338 K+ R+ Sbjct: 303 SKHPRK 308 >gi|294085314|ref|YP_003552074.1| site-specific recombinase, phage integrase family [Candidatus Puniceispirillum marinum IMCC1322] gi|292664889|gb|ADE39990.1| site-specific recombinase, phage integrase family [Candidatus Puniceispirillum marinum IMCC1322] Length = 420 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 48/266 (18%), Positives = 96/266 (36%), Gaps = 28/266 (10%) Query: 85 GSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVL 143 + + ++ I+ D + +T +++R + P +A + L + V+ Sbjct: 127 HNWKPVTLAGSRRAYEAYIVPFFTGMDVQTVTPENVRRWFAALHDRPGAANRSLALLSVM 186 Query: 144 FKWAVRQEYVA--INPCLSVERPKRKTEGIRPWTKED---MQQFKSFWSEGSQPRLAFE- 197 + A R Y NPC + R + + + R + ++ + + + + R+A Sbjct: 187 MREAERYGYRDANTNPCKGMRRYRLRKQE-RFLSDDEYRHLGRMLAAQESVTPLRVAMIR 245 Query: 198 FLLYSGLRCSDSCRAGVQHLQNNI-----FSIKTQKTGTIITVELPDGFMKLLAMTPIGK 252 LL +G R S+ + +N + KTG + + L D +L P Sbjct: 246 LLLLTGCRKSEIRTLKWCYYRNGRNGRKHLFLPDSKTGQKM-IYLSDPARAILDKIPRKS 304 Query: 253 ETFFINNDKQKMNATQ----------FSIWFKAKATKAGV-NKSAHGVRKFSATISADAG 301 F K+K + F F+ T+AG+ + H +R A+++ G Sbjct: 305 AWVFPTTIKRKRGRPRKDAVPFFDIDFWNIFR---TRAGLDDVRLHDLRHSYASLAIRNG 361 Query: 302 ATAHELMATYGWKTVDQAETYTKGAD 327 + L G + YT D Sbjct: 362 VSLVTLGRLVGHVDPETTLQYTHLTD 387 >gi|291522352|emb|CBK80645.1| Site-specific recombinase XerD [Coprococcus catus GD/7] Length = 159 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 25/142 (17%), Positives = 45/142 (31%), Gaps = 12/142 (8%) Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE--------LPDGFMKLLA 246 E + +G+R S+ + + I+ + G + L + Sbjct: 1 MLELMYATGIRVSELVSLTIDDINVQAGYIRCSERGRERIIPIGSVARISLRQYLKQARP 60 Query: 247 MTPIGKET--FFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGA 302 + F N Q M+ F K A KAG+ + + H +R A + GA Sbjct: 61 AMISDDSSAILFPNYSGQPMSRQGFWKILKQYAAKAGIESDITPHTLRHSFAAHLLENGA 120 Query: 303 TAHELMATYGWKTVDQAETYTK 324 + G + + Y K Sbjct: 121 DLRSVQEMLGHSDISTTQIYLK 142 >gi|291288449|ref|YP_003505265.1| integrase family protein [Denitrovibrio acetiphilus DSM 12809] gi|290885609|gb|ADD69309.1| integrase family protein [Denitrovibrio acetiphilus DSM 12809] Length = 397 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 66/363 (18%), Positives = 130/363 (35%), Gaps = 28/363 (7%) Query: 7 LPPFVTKERTRHGKII-YYFRKGHGRRIRLPYPHES--TFIPAYMSALTGSTPKREYINS 63 L F + R K +R GR+ + S T A A T T + + Sbjct: 32 LKGFALRVTGRPTKSYVIRYRNEEGRQKVMTLFRASNITADEARRKARTKLTEAQGGTDI 91 Query: 64 PRKKPTTLKWLI-----SEYRKSAHWGSLAVNSRISFESYFDQII-RKSGDFDYRKITTK 117 ++K K ++ Y + + + + + ESY +++I G+ + IT + Sbjct: 92 LKEKQEKRKAMLFSEFAEIYLEHHARPNNSAGTVKTNESYLERLILPAFGNRPLKSITPE 151 Query: 118 HIRSGVES-RKHTPSSAIQFLTSMRVLFKWAVRQEYVA--INPCLSVERPKRKTEGIRPW 174 K TP A + +R +F A Y+ NPC+ ++ K +T R Sbjct: 152 DTAKLHHKIGKSTPVQANRVHALLRKMFTLAETWRYIPQNTNPCVHTQKYK-ETPVQRFL 210 Query: 175 TKEDMQQFKSFWSEGSQ----PRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQK 228 T ++ ++ + + + LA L+Y+G R + ++++N N+ I K Sbjct: 211 TPDETKRLEDVLEKYEEKYYSAVLALRLLMYTGCRKEEILTLKWENIKNELNLLHIPKSK 270 Query: 229 TGT---IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NK 284 TG ++ E+ D + F N+ ++ +AG+ + Sbjct: 271 TGEKNVPVSHEVLDMLENAYKVNEYVCFGKFENSR-----LIGLQKIWERLRKEAGLEDV 325 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344 H +R A+ + G + G K + E Y L ++ +S+ Sbjct: 326 RIHDLRHSFASTAISGGINIEFISKLLGHKRITTTEYYYAHVQNDPLHEAANKIATSITT 385 Query: 345 SDD 347 + Sbjct: 386 ARK 388 >gi|225677009|ref|ZP_03788023.1| site-specific recombinase, phage integrase [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|225590948|gb|EEH12161.1| site-specific recombinase, phage integrase [Wolbachia endosymbiont of Muscidifurax uniraptor] Length = 310 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 42/289 (14%), Positives = 90/289 (31%), Gaps = 40/289 (13%) Query: 71 LKWLISEYRKSAHW----GSLAVNSRISFESYFDQIIRKS-----GDFDYRKITT----- 116 L +I ++ W S + N+ S+ +I G+ + + Sbjct: 3 LGSIIEKWY---EWLRCNRSYSPNTLESYMRDLKDLISFLNTHIGGEVNVGTLEKLSVPE 59 Query: 117 -KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCL-SVERPKRKTEGIRPW 174 + + +R S + L+ +R FK+ ++ Y N + S+ RP ++ + Sbjct: 60 LRSWLTSRYARGVNARSNARALSVIRNFFKY-IKNNYNIDNEAVFSLSRPIQRRTLPKAL 118 Query: 175 TKEDMQQFKSFWSEGS--------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226 + +++ + L +GLR S++ V + N I T Sbjct: 119 SIPNIKTLLKEMKLSDLGESWVVKREIAIIVLLYSTGLRISEALNLRVSDINNESL-IVT 177 Query: 227 QKTGTIITVELPDGF----MKLLAMTP-----IGKETFFINNDKQKMNATQFSIWFKAKA 277 K V + + + P + F+ +K+ T + + Sbjct: 178 GKGDKQRQVFILPVVKKCIQEYVKTCPYLGINDEAQYLFLGVRGKKLGRTYVANRLQKIR 237 Query: 278 TKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 + S H R AT + G +++ + YT Sbjct: 238 RILNLPEILSPHAFRHSFATHLLQEDIDIRSIQQLLGHSSLETTQVYTH 286 >gi|163748706|ref|ZP_02155959.1| integrase/recombinase XerC [Shewanella benthica KT99] gi|161331816|gb|EDQ02620.1| integrase/recombinase XerC [Shewanella benthica KT99] Length = 308 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 32/269 (11%), Positives = 84/269 (31%), Gaps = 23/269 (8%) Query: 76 SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD--------FDYRKITTKHIRSGVESRK 127 Y +S L+ ++ ++ ++ K + + +H+ + + Sbjct: 10 ESYCRSER--QLSAHTVRNYLYELHRVSAKLEENACLSFLWSEVSHEQIQHVLGQLHRQG 67 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 +P S L++++ + + + + NP S+ PK+ + + + + Sbjct: 68 LSPRSLSLTLSAVKQFCDFLLGEGVINANPAKSLSAPKQNKPLPKNMDLDSVTHLLEIDA 127 Query: 188 EGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMK 243 + + + E SGLR ++ V ++ K V + ++ Sbjct: 128 DDLLSVRDKAIMELFYSSGLRLAELAALDVLAIRFAERQVKVLGKGSKERIVPVGRCAIQ 187 Query: 244 LLAMTPI-------GKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSA 294 + E F+ +++ + +N H +R A Sbjct: 188 AIQAWLALRESILCQDEALFVTAKGKRLAHRSIQARLAKWGQEQALNMRVHPHKLRHSFA 247 Query: 295 TISADAGATAHELMATYGWKTVDQAETYT 323 T ++ A + G + + YT Sbjct: 248 THMLESSADLRAVQELLGHANLSTTQIYT 276 >gi|154509161|ref|ZP_02044803.1| hypothetical protein ACTODO_01682 [Actinomyces odontolyticus ATCC 17982] gi|153798795|gb|EDN81215.1| hypothetical protein ACTODO_01682 [Actinomyces odontolyticus ATCC 17982] Length = 303 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 50/297 (16%), Positives = 93/297 (31%), Gaps = 40/297 (13%) Query: 65 RKKPTTLKWLISEYRKSAHWGSL-AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123 R P T+ + + + SL A + +T + +RS + Sbjct: 18 RMSPHTVSAYLGDLHSLMEFLSLDADATPEQLR---------------EALTQRAVRSWL 62 Query: 124 ES---RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 S+ + ++R WA+R+ + +P + P+ P + D + Sbjct: 63 ARTLADGGARSTIARHTAAIRNFTSWAMREGILVSDPAALLSSPRADQLLPSPLDESDAR 122 Query: 181 QF------KSFWSEGSQPRLA--FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-T 231 ++ SQ R E GLR S+ C + L + +++ G Sbjct: 123 VLLNTARDEAAAGGASQIRNWAILELTYACGLRVSEVCALDISSLNRDALTVRVVGKGNK 182 Query: 232 IITVELPDGFMKLLA----------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281 V L F+ + +++ A +AG Sbjct: 183 ERVVPYGPPAADALDHWLVRGRPQLAGERSGNALFLGDKGGRIDPRIVRSMVHKTAARAG 242 Query: 282 V-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 V + + HG+R +AT GA + G ++ + YT D RL R Sbjct: 243 VHDIAPHGLRHSTATHLLQGGADLRAVQEMLGHSSLSTTQRYTH-VDTARLSAIYQR 298 >gi|312142439|ref|YP_003993885.1| integrase family protein [Halanaerobium sp. 'sapolanicus'] gi|311903090|gb|ADQ13531.1| integrase family protein [Halanaerobium sp. 'sapolanicus'] Length = 380 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 57/340 (16%), Positives = 113/340 (33%), Gaps = 48/340 (14%) Query: 30 GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAV 89 G+R R+ + + ++ +++ + + + L+ Sbjct: 25 GKRNRISKTFNT--KREAKDWVAKKRQEKTMGIGTSLTKISVEKYLKRWLEDYALPKLSP 82 Query: 90 NSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESR--------KHTPSSAIQFLTSM 140 + +E II G +++ HI+S + K S L Sbjct: 83 TTYAGYEMIVTKHIIPALGALKLKEVKPLHIQSYQNKKLKKGRLDGKEGGLSKKTVLQHH 142 Query: 141 RVL---FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFE 197 R+L FK AV + ++ NP +V P + IR + E+++ + + S Sbjct: 143 RILNRAFKQAVLWQLISYNPVKAVPAPSPEKPEIRTLSIEEVEHLLNK-AGNSWLYYFIY 201 Query: 198 FLLYSGLRCSDSCRAGVQHLQNN-------IFSIKTQKTGTIITVELPDGFMKLLAMTPI 250 + +G+R + G H+ N +KT+KTG + +++++ Sbjct: 202 VAVNTGMRRGELLGLGWNHIDFNGKTIQVTRTLVKTKKTGMVYKGPKNKSSRRVISIAED 261 Query: 251 G------------------------KETFFINNDKQKMNATQFSIWFKAKATKAGVN-KS 285 F +D K+ + FK A + G+N S Sbjct: 262 DTKILKKLKIKQNENKLLFGPEYQNNNLVFCKSDGSKIYPNTTTNRFKLLAKRIGLNSVS 321 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324 H +R AT+ AG + G T+ +TY+ Sbjct: 322 LHDLRHTHATLMLQAGVHPKVVQERLGHSTITTTLDTYSH 361 >gi|261207287|ref|ZP_05921975.1| predicted protein [Enterococcus faecium TC 6] gi|289566174|ref|ZP_06446608.1| predicted protein [Enterococcus faecium D344SRF] gi|260078502|gb|EEW66205.1| predicted protein [Enterococcus faecium TC 6] gi|289162035|gb|EFD09901.1| predicted protein [Enterococcus faecium D344SRF] Length = 382 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 41/279 (14%), Positives = 98/279 (35%), Gaps = 41/279 (14%) Query: 93 ISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEY 152 + E + + I+ G + KIT + + +F+ + + +A++ Y Sbjct: 91 KTKEQFANHILPAFGAYKINKITIDIAQKFANEKVKKFVLYREFINNASRICDYAIKLGY 150 Query: 153 VAINPCLSVERPKRKTEGIR-----PWTKEDMQQFKSFWSEGSQPRLA--FEFLLYSGLR 205 + NP + PKRK ++KE+++ F + R+ F L ++G+R Sbjct: 151 LQDNPLKKITVPKRKVSVHEEDTLNFFSKEELEIFLKSVEKKKDIRMYSFFRTLAFTGMR 210 Query: 206 CSDSCRAGVQHLQ----------------NNIFSIKTQKTG-TIITVELPDGFMKLLAMT 248 + + + N ++ KT + + + D M +L Sbjct: 211 VGELLALTWKDIDFNDNYIKINKTLARGKNRRLYVEQPKTKNSKRDIPVDDETMNILKKW 270 Query: 249 PIGKETFFINNDKQKMNATQF---------------SIWFKAKATKAGVNK-SAHGVRKF 292 + + + + ++ Q W + + + + + HG+R Sbjct: 271 RLEQRKWLLTLGINTLSKNQLVFSNQKNEYLQLSKPRKWLEVIIKQNNLKRITIHGLRHT 330 Query: 293 SATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIR 330 A++ +AGA ++ G ++ + Y D+ + Sbjct: 331 HASLLLEAGANIKDVQERLGHSSIQITMDLYIHITDKRK 369 >gi|20808517|ref|NP_623688.1| integrase [Thermoanaerobacter tengcongensis MB4] gi|34222921|sp|Q8R890|XERCL_THETN RecName: Full=Tyrosine recombinase xerC-like gi|20517139|gb|AAM25292.1| Integrase [Thermoanaerobacter tengcongensis MB4] Length = 391 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 43/310 (13%), Positives = 93/310 (30%), Gaps = 56/310 (18%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG-----DFDYRKITTKHIRSGVE 124 TL L+ + S + + +E ++ I+ S + I + + + Sbjct: 65 TLGDLMHTWLFEVVRMSRKPATFVKYEGHYRNYIKNSELYGMKISIIKSIQIQRYYNKLY 124 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP------WTKED 178 + + + ++ F +AV + Y+A NPC + T + ++ E+ Sbjct: 125 QQGKSSKTIKALNNFLKTFFNYAVDEGYLAKNPCTGKKIVIPGTPEEKIETEIETFSDEE 184 Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV--- 235 +++ K G + + F +GLR + + ++ Q+ +T+ Sbjct: 185 IKKIKEALK-GHRLKALFLLAFGTGLRQGELLGLKWTDIDFEKKELRVQRMIKQVTIIDE 243 Query: 236 ----------------------ELP----DGFMKLLAMT-------------PIGKETFF 256 +P + + K F Sbjct: 244 KGNRKYKTIEQIPKTKNSIRTVPIPSSLIPMLKEHRNRQREEKLKAGSVYLNDVEKGYVF 303 Query: 257 INNDKQKMNATQFSIWFKAKATKAGVNKS-AHGVRKFSATISADAGATAHELMATYGWKT 315 ++A+ +K +AGV H +R AT + G + G Sbjct: 304 TTELGNTIDASNLLKTYKKILNRAGVPYRKFHAIRHTYATKLFERGVPLKTVSELLGHSN 363 Query: 316 VD-QAETYTK 324 + A YT Sbjct: 364 ISITANIYTH 373 >gi|312621730|ref|YP_004023343.1| integrase family protein [Caldicellulosiruptor kronotskyensis 2002] gi|312202197|gb|ADQ45524.1| integrase family protein [Caldicellulosiruptor kronotskyensis 2002] Length = 329 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 45/279 (16%), Positives = 88/279 (31%), Gaps = 25/279 (8%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129 T + +S + ++ ++ +++ ++ I+ G + I+ S Sbjct: 34 TFQEFVSYWFEAYAKIAVKQSTQKRYKELLKPAIQAIGSKPLSDVKPLDIQKIYISLTGK 93 Query: 130 PS--SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 S + ++ + +FK AV EY++ NP V P + + W E ++F Sbjct: 94 ISDCTILKLHRLLHEIFKHAVMWEYISNNPVKKVLPPSPEKKVFDVWDAETAKRFLEVI- 152 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSI-----------------KTQK 228 L++G+R + + + I S+ KT K Sbjct: 153 RNETIYYPVLIALHTGMRAGEIVSLKWCDVNFEARIISVVKSVRNNRGLKTSDVKTKTSK 212 Query: 229 TGTIITVELPDGFMKLLAMT-PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SA 286 I L L +T P + + S FK + Sbjct: 213 RSVYINDVLYSELKNLYEITKPKPDDFVCPRLPTGNLTVEYLSKRFKKLVKRYNFPVIRF 272 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTK 324 H +R AT+ G + G + A+TY+ Sbjct: 273 HDLRHTFATLMLSLGVNTKIVAEILGHSDIKLTADTYSH 311 >gi|317055373|ref|YP_004103840.1| integrase family protein [Ruminococcus albus 7] gi|315447642|gb|ADU21206.1| integrase family protein [Ruminococcus albus 7] Length = 396 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 56/323 (17%), Positives = 107/323 (33%), Gaps = 53/323 (16%) Query: 76 SEYRKSAHWGSLAVNSRISFESYF---DQIIRKSGDFDYRKITTKHIRSGVESRKH---- 128 ++ + +L + +E ++ G KIT + I++ V S Sbjct: 74 EQWFEEYAKPNLRNTT---YERMLQLRKRVYAAIGHLRMDKITPRQIQAFVNSLSKEGAN 130 Query: 129 -------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 P + L+ + +F + V+ ++ NPC V PK + + +T E +Q+ Sbjct: 131 ERTGKPLAPKTIRHNLSFVSDVFAYGVKMGVISDNPCAKVTLPKNEQTEKKIYTPEQVQR 190 Query: 182 FKSFW-SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIK-----TQKTG--- 230 F S E + R F ++YSG R + + + NNI S++ T K G Sbjct: 191 FLSLLNDEPLKYRTFFNLMIYSGFRRGEMLGLEWKDVDFENNIISVRRTSNYTAKKGVYT 250 Query: 231 -------TIITVELPDGFMKLLAMTP--------------IGKETFFINNDKQKMNATQF 269 + T++ P M +L + + ++ + + M Sbjct: 251 DTTKTRKSQRTLKFPQAIMDMLREYKAEQDEQALKCGDKWVETDRLYVKWNGEPMQNGTP 310 Query: 270 SIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTK--G 325 W K + H R A++ + G + G TV Y Sbjct: 311 YFWLGEFCEKHDLPFYGLHSFRHLFASLLVNQGVDIVTVSGALGHSTVSTTSNIYCHMLE 370 Query: 326 ADRIRLGIKNSRRISSVVDSDDP 348 R ++ S + +P Sbjct: 371 ESRAKVSDAVSSALDFSGKKKEP 393 >gi|222530499|ref|YP_002574381.1| integrase family protein [Caldicellulosiruptor bescii DSM 6725] gi|222457346|gb|ACM61608.1| integrase family protein [Caldicellulosiruptor bescii DSM 6725] Length = 373 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 41/299 (13%), Positives = 97/299 (32%), Gaps = 39/299 (13%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVE---- 124 T L+ + + +++++ S+ S I GD + K+T ++ + Sbjct: 62 TFGELLDLWLNTVAKNRVSLSTFQSYSSSIALHIKPFLGDVELNKLTAMDLQKYYQHITG 121 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 + + + A+ + +AVR + NP V+ P++++ W ++ +++ Sbjct: 122 EKGLSSTLALYHHRIIHQALDYAVRMNMIEKNPADYVDPPRKRSYQPSIWDEDTIKRALD 181 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT--------------- 229 + + + +Y+G+R + + I KT Sbjct: 182 IF-RNTNIWVPVLLAIYTGMRIGEITALKWDDINLEQGYIVVSKTLMKINRQLYIKEKGE 240 Query: 230 --GTIITVELPDGFMKLLAMTPIGKETF--------------FINNDKQKMNATQFSIWF 273 + V + ++ L +E + D + + + F Sbjct: 241 NKSSYRIVAISSNVIEELKQWRRKQEQYKEKLKELYHNEGFVCTFEDGRVQDPKYITKVF 300 Query: 274 KAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIR 330 + K G+ K H +R A++ G + G T+ Y+ D R Sbjct: 301 QKTIEKHGLPKIRFHDLRHTHASLLLKHGVDPKHISDRLGHSTITTTLNIYSHVFDEKR 359 >gi|145300732|ref|YP_001143573.1| phage integrase [Aeromonas salmonicida subsp. salmonicida A449] gi|142853504|gb|ABO91825.1| phage integrase [Aeromonas salmonicida subsp. salmonicida A449] Length = 353 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 55/333 (16%), Positives = 100/333 (30%), Gaps = 29/333 (8%) Query: 11 VTKERTRHGKIIYYFRKG---HGRRIRLPY-PHESTFIPAYMSALTGSTPKREYINSPRK 66 V K+ K + GRRIR + K S + Sbjct: 2 VVKKVDGKTKPWLADLRPDGDGGRRIRKSFMTKGEALAWERHQLTNKPWLKEPEPESEKH 61 Query: 67 KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126 + L L+ + H +LA R + + + T++H + E R Sbjct: 62 EQRRLLDLVHIWFG-RHGQTLADGDRR--RDKLVWLCEALDNPIATEFTSEHFSAYRERR 118 Query: 127 ------------KHTPSSAIQFLTSMRVLFKWAVRQE-YVAINPCLSVERPKRKTEGIRP 173 K TP++ + ++ +F R + NP + + K + + Sbjct: 119 LAGELYVPGQCKKVTPTTINREQLYLQAVFNELARLGVWNGGNPLSDLRQYKVQESELAY 178 Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII 233 ++++++Q E L L +G R S+ + + + K Sbjct: 179 LSQDEIEQLLDAGKEQRDLWLVVMLCLSTGARWSEIEKVSRSQVGMGRITFTKTKGKRNR 238 Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFS 293 TV + LAM P F + +F + K V +S H +R Sbjct: 239 TVPVAPWL---LAMLPKRTGRLFDD------CYAEFEKAIRRANIKLPVGQSTHVLRHTF 289 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGA 326 A+ G L G + Y+ A Sbjct: 290 ASHFMMNGGNILVLQRILGHTDIKMTMRYSHFA 322 >gi|51473985|ref|YP_067742.1| site-specific tyrosine recombinase XerC [Rickettsia typhi str. Wilmington] gi|81389926|sp|Q68VT2|XERC_RICTY RecName: Full=Tyrosine recombinase xerC gi|51460297|gb|AAU04260.1| DNA integrase/recombinase XerC [Rickettsia typhi str. Wilmington] Length = 305 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 47/283 (16%), Positives = 108/283 (38%), Gaps = 28/283 (9%) Query: 70 TLKWLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDFD--------YRKITTKHIR 120 +++ LI +++K + + N+ I++ + + ++ + + + IR Sbjct: 5 SIQELIKQWQKYLILQRNYSNNTVIAYNNDLKHFLEFMNYYNSELVTINHIKTVDIRLIR 64 Query: 121 SGVESRKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177 S + RK+ T SS + L++++ +K+ + + + S++ PK+ + + + Sbjct: 65 SWLAKRKYENFTASSIARGLSTVKNFYKFLEKTILLNSHIIFSIKSPKKAKLLPKALSVD 124 Query: 178 D-------MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230 D ++ + + + + + +GLR S++ HLQN F K Sbjct: 125 DVLISLEHIEGYGNVKWVELRNKALLVLIYAAGLRISEALSITKLHLQNLEFIKIIGKGS 184 Query: 231 TIITVELPDGFM----KLLAMTP---IGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283 + K L + P E F +K+ + F+ G+ Sbjct: 185 KERIIPWLPFARNLITKYLGILPYKLDENEPIFRGKHGKKLQPSVFNRELIKLKRVYGLP 244 Query: 284 --KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 +AH R A+ + GA + G K++ + YT+ Sbjct: 245 EYLTAHSFRHSFASHLLEYGADLRSIQELLGHKSLSTTQKYTQ 287 >gi|257870365|ref|ZP_05650018.1| integrase/recombinase [Enterococcus gallinarum EG2] gi|257804529|gb|EEV33351.1| integrase/recombinase [Enterococcus gallinarum EG2] Length = 320 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 53/263 (20%), Positives = 101/263 (38%), Gaps = 16/263 (6%) Query: 75 ISEYRK---SAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----K 127 I+ Y++ S L+ + + + +R + +TT IR + +R + Sbjct: 44 IAAYKQFFVSKKIQGLSSGTLNLYMQTINLFMRSV-RKSFSDVTTNDIRLFIANREMIDR 102 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + + + + FKW +EY+A +P VE K + +++ ++++ +S + Sbjct: 103 VSKGTLARERGCIVRFFKWLCNEEYIAKDPGARVENIKVPKRRKQEFSELEVEKLRS-AT 161 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELP----DGFM 242 S+ L E LL +G R S+ + SI K T+ L Sbjct: 162 ANSKEALIIELLLSTGCRVSELVSLNFRDYDQENDSITVIGKGNKQRTLYLNAKAKMALN 221 Query: 243 KLLAMTP-IGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADA 300 L P I FF ++M + K +A V N H R+ +AT++ Sbjct: 222 HYLKDVPHITGPLFFGQTVGKEMTSAGVQKLVKRLGNRAEVANVHPHRFRRTAATLARRH 281 Query: 301 GATAHELMATYGWKTVDQAETYT 323 G +M G +++D Y+ Sbjct: 282 GMPIELVMNFLGHESIDTTLKYS 304 >gi|206976115|ref|ZP_03237024.1| prophage lambdaba03, site-specific recombinase, phage integrase family [Bacillus cereus H3081.97] gi|206745569|gb|EDZ56967.1| prophage lambdaba03, site-specific recombinase, phage integrase family [Bacillus cereus H3081.97] Length = 303 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 44/291 (15%), Positives = 94/291 (32%), Gaps = 26/291 (8%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGVESR 126 L+ +I EY + + Q+ R + + I T H++ V ++ Sbjct: 3 LEDVIEEYLYHCMAKGFTQKTMKNKRQEMKQLKRFLMNEKRISELEAINTLHLKQYVRTK 62 Query: 127 ---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----M 179 P S + +R F W ++EY+ N VE PK + ++ +T ++ + Sbjct: 63 HEEGLQPQSIVAMSKIVRAFFSWCQKEEYLKENIAKKVELPKVPKKLLKGFTVQEVSAMI 122 Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD 239 + F ++ + L GLR + Q+++ + + I + + Sbjct: 123 EAFSYKNYIEARNKAIVAMLSDCGLRAMEIRGLLTQNVKETKILVNGKGNKERI-MFISP 181 Query: 240 GFMKLLAM-----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KS 285 K+L + + +F++ ++ K + + S Sbjct: 182 PLKKILIRYERLKKDYLKDRIVKTDHYFLSYTADPLSHMGIYNVIKEAGERVKIEEARCS 241 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336 H R F A G L G + + Y + + L + Sbjct: 242 PHTFRHFFAVQCILNGVDILTLSKLLGHGDLSTTQRYLQSLEDFELIKRAM 292 >gi|120436726|ref|YP_862412.1| tyrosine recombinase XerC [Gramella forsetii KT0803] gi|117578876|emb|CAL67345.1| tyrosine recombinase XerC [Gramella forsetii KT0803] Length = 296 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 40/278 (14%), Positives = 96/278 (34%), Gaps = 26/278 (9%) Query: 70 TLKWLIS--EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK 127 + + + K + ++ + ++ D I +++ IRS + Sbjct: 2 SFSAFLDYLQLEKKYAFHTIT-AYKADLNAFQDFIQNTFEQDTILEVSYSQIRSWIVELS 60 Query: 128 HTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----Q 180 + + + ++S++ +++ ++ + + +P + K + P+++E++ + Sbjct: 61 ESGISNRTINRKISSLKAYYRFLLKTKQIEFSPLAKHKALKTPKKIQIPFSEEEIVSVLE 120 Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELP- 238 EG + RL E +G+R + + L +K K + L Sbjct: 121 NIDDSTYEGIRGRLIVELFYSTGIRRIELINIQLSDLDLERGVLKVLGKRSKERYIPLIS 180 Query: 239 ---DGFMKLLAMTP-----IGKETFFINNDKQK----MNATQFSIWFKAKATKAGVNKSA 286 D +K L E F+ + K + +F + KS Sbjct: 181 SVIDTAVKYLERRREEGVNHDSEFLFLTSKGDKIYESFVYRVINNYFSE--VSGKLKKSP 238 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R AT + GA + + G ++ + YT Sbjct: 239 HILRHSFATHLLNQGANLNAVKELLGHSSLAATQVYTH 276 >gi|242371734|ref|ZP_04817308.1| bacteriophage integrase [Staphylococcus epidermidis M23864:W1] gi|242350520|gb|EES42121.1| bacteriophage integrase [Staphylococcus epidermidis M23864:W1] Length = 402 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 63/385 (16%), Positives = 133/385 (34%), Gaps = 62/385 (16%) Query: 17 RHGKIIYYFRK---GHGRRIRLPYPHESTF----IPAYMSALTGSTPKREYINSPRKKPT 69 + G + +R + + Y S F + + + + +P + Sbjct: 18 KRGNT-WRYRISLGKDAKTGKYKYISNSGFKRKSDAKHHAEMVERQLRTGDYIAP--STS 74 Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE--SRK 127 T K + +++ K + V+S + E I + + + I + V S + Sbjct: 75 TFKQVANDWLKQYA-NEVKVSSVRAREKAIHHAIERFNNKPIQTINKHDYQRFVNDISAQ 133 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK--------TEGIRP-WTKED 178 ++ + + S ++FK+A + + I P ++RPK+K TE + K++ Sbjct: 134 YSKNYIDSIIASTNMIFKYAYDMKLIRIMPSEGIKRPKKKVSVEELEDTEIHKKFLEKDE 193 Query: 179 MQQFKSFWSEGSQPRLAFEF---LLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQ------ 227 + QF P+ +FE L Y+G+R + + NN +I Sbjct: 194 LFQFLEIAKNHHSPQNSFEVFCTLAYTGMRAGELLALKWSDIDFENNTINITKTYYNPNN 253 Query: 228 ----------KTGTII-TVELPDGFMKLLAMTPIG------------KETFFINNDKQKM 264 KT + I + + +KLL + F + + + Sbjct: 254 NKKQYQILTPKTESSIGKIPVDPHVIKLLKNYKVDVQDTWKNELYVDNNFVFTDVNGYPL 313 Query: 265 NATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE- 320 + +W KA K + S H R + +AG E+ K ++ Sbjct: 314 VIKKLQLWIKAILKKTDITNKQISTHSFRHTHCALLIEAGVHIKEIQERLRHKDINTTMN 373 Query: 321 TYTKGADRIRLGIKNSRRISSVVDS 345 Y K + + S++ S ++++ Sbjct: 374 IYAKITNSYKK--DASQKFSKLMEN 396 >gi|154247950|ref|YP_001418908.1| integrase family protein [Xanthobacter autotrophicus Py2] gi|154162035|gb|ABS69251.1| integrase family protein [Xanthobacter autotrophicus Py2] Length = 467 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 61/347 (17%), Positives = 117/347 (33%), Gaps = 29/347 (8%) Query: 7 LPPFVTK--ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIP-------AYMSALTGSTPK 57 +P F+ K R +I Y RR + + +++ + Sbjct: 28 IPGFLVKITPTGRKTFMIAYVANNGQRRKPAIGRYGEITVEQARRIAQDWLAEVRRGADP 87 Query: 58 REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITT 116 + R+ P T+K L + ++ S + I+ G +T Sbjct: 88 SAERTASRQAP-TVKELFDRFITDYSESRNKPSTVKSNRGFGKRHILPALGHMKVPDVTR 146 Query: 117 KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVA--INPCLSVERPKRKTEGIRPW 174 I + ++ +P +A + L+++R +F A NPC + + + + R Sbjct: 147 SDIANLMKKMSKSPVNANRVLSAVRKMFNMAEVWGMRPDGTNPCRHIPKFPERGK-TRLI 205 Query: 175 TKEDMQQFKSFWSEGSQPRL-------AFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSIK 225 T +M++ + L A R S+ N Sbjct: 206 TDAEMRKLFEYLDRAEAEGLEHPFIILAIRLQFEFAARMSEIIELEWSWVDFDNRRVVWP 265 Query: 226 TQKTGTIITVELPDGFMKLLAMTPIGKETFFI----NNDKQKMNATQFSIWFKAKATKAG 281 KTG + + ++L P+ +++ F+ + K+ M+ + +K +AG Sbjct: 266 DSKTGGMSK-PMNAEALRLFETAPLLEDSPFVCPSVFDPKKAMSPYTYYQGWKRILKRAG 324 Query: 282 VNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 + HG+R SAT A++G MA KTV Y D Sbjct: 325 LPHVGTHGIRHRSATDIANSGVPVKVGMALTAHKTVTMFMRYVHTED 371 >gi|319441371|ref|ZP_07990527.1| integrase/recombinase [Corynebacterium variabile DSM 44702] Length = 313 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 53/298 (17%), Positives = 101/298 (33%), Gaps = 43/298 (14%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE---SRKHTP 130 I Y + + N+ ++ + G T H R ++ Sbjct: 5 IDGYLEYLDLVKGRSANTVRAYGADLRAAFE--GVRTLDGFTLDHCRDVLDWAVENGDAK 62 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----QQFKSFW 186 ++ + +S+R W V + +NP ++ PK R ++ + +Q ++ Sbjct: 63 ATLARIASSLRGFGSWLVHTGVLQVNPAAGLQTPKTSRTLPRVLREDQVGGVLEQARAHA 122 Query: 187 -------SEGSQPR-----LAFEFLLYSGLRCSDSCRAGVQHLQN----NIFSIKTQKTG 230 G P+ + E L +G+R S+ A V+ L S++ G Sbjct: 123 HREPSEGDPGPTPKDIRDWVMLEVLYATGIRVSELAGADVEDLGGNGDPGSRSLRVVGKG 182 Query: 231 TIITV---------ELPDGFMKLLAMTPIGKET------FFINNDKQKMNATQFSIWFKA 275 V L + M P T F+ +++ Q Sbjct: 183 DKTRVVPFGPTVEAALHEWLAVRAGMLPASGVTRAAQPALFLGARGGRIDVRQVRTVVHR 242 Query: 276 KATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRL 331 AGV + + HG+R +AT D GA + G +++ + YT G +R+R+ Sbjct: 243 ATGGAGVPEIAPHGLRHSAATAVLDGGADLRVVQQLLGHTSMNTTQIYTHVGTERLRV 300 >gi|253563055|ref|ZP_04840512.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_2_5] gi|251946831|gb|EES87113.1| tyrosine type site-specific recombinase [Bacteroides sp. 3_2_5] Length = 393 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 40/216 (18%), Positives = 79/216 (36%), Gaps = 14/216 (6%) Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE---RPKRKTEGIRPWTKEDMQQF 182 + + ++ + + AV E + NP ++ +PKR+ T ++++ Sbjct: 170 KNISANTQVHYYKVFHHCLNSAVIDEIITSNPMDKIKNEEKPKRRRTERAFLTIDELKIL 229 Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-----IFSIKTQKTGTIITVEL 237 + + AF F + GLR SD +L+ + QKT I+++ L Sbjct: 230 SQTDFHNATLKKAFLFSCFCGLRHSDIVALTWGNLKKGKVGKMELHMTQQKTQEILSLPL 289 Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI-WFKAKATKAGVNK--SAHGVRKFSA 294 + L P+ + + + + + A KAG+ K + H R A Sbjct: 290 S---KEALKQLPVRGKVPDTEKVFKGLISLGRTNEILPKWAAKAGIQKHITFHSARHTHA 346 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 T+ GA + + G + + Y K D + Sbjct: 347 TMMITLGADLYTVSKLLGHTNIQTTQIYAKIVDESK 382 >gi|88602489|ref|YP_502667.1| phage integrase [Methanospirillum hungatei JF-1] gi|88187951|gb|ABD40948.1| phage integrase [Methanospirillum hungatei JF-1] Length = 301 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 41/259 (15%), Positives = 93/259 (35%), Gaps = 11/259 (4%) Query: 79 RKSAHWGSLAVNSRISFES---YFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQ 135 R+ + L + R + + + ++G ++++ R++ ++ + Sbjct: 17 RRFGQFIWLTRSFRGDLSKKWEHKELLRLETGVDVSASDISRYLEFLSLDRQYHATTYNR 76 Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA 195 L+S+ +++ + QE V NP ++RPK K + ++ + + + + RL Sbjct: 77 ILSSLSSFYRFLLMQEVVETNPVPRIDRPKVKEKELKYLKHSQVMRLLQSIPD-ERDRLM 135 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET- 254 + +G+R S+ C V+ + + I+ G + + D IG Sbjct: 136 IRIIYATGVRVSELCTMNVEDVDFDDQMIRVLGKGGKVRMVFVDEVTLNEIAGLIGNRLS 195 Query: 255 --FFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYG 312 F ++ + FK A G+ + H +R A+ + G Sbjct: 196 GPLFPGQGGNHISVRTVQLIFKKYAPP-GI--TPHKIRHSYASELYRRSRNLRVVQENLG 252 Query: 313 WKTVDQAETYTK-GADRIR 330 ++ E Y D R Sbjct: 253 HASIKTTEVYLHTDVDERR 271 >gi|307297306|ref|ZP_07577112.1| integrase family protein [Thermotogales bacterium mesG1.Ag.4.2] gi|306916566|gb|EFN46948.1| integrase family protein [Thermotogales bacterium mesG1.Ag.4.2] Length = 299 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 41/292 (14%), Positives = 103/292 (35%), Gaps = 30/292 (10%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFES---YFDQIIRKSGDFDYRKITTKHIR------ 120 + ++++ + +++ N+ ++ S +F+ + + G DY+ + K I Sbjct: 3 FSEAVERFKENMEFVRNMSSNTVAAYLSDLHHFELFLNERG-IDYKSVKRKDIELFVKEY 61 Query: 121 --SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 ++ + ++ + L+++R + + V+ P ++ PK + T ++ Sbjct: 62 SQGKYSRKRPSATTVARNLSTIRSFYTFLYISGTVSKVPTELIKNPKTRRRIPDYITHDE 121 Query: 179 MQQFKSFWS---EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN---IFSIKTQKTGTI 232 + + S + G + + + + GLR S+ C+ + L+ I + K Sbjct: 122 VMEILSSFRSTNLGKRNKAIVAIMYFCGLRVSEVCKLRLGDLRMGNSPAVRIMSGKGNRD 181 Query: 233 ITVELPD-------GFMKLLAMTPIGK--ETFFINNDKQKMNATQFSIWFKAKATKAGVN 283 V + D ++++ P+ + + FI + M + Sbjct: 182 REVPMNDQVLSIVKEYLQIRREFPMSEYEDHVFIGTRGEPMARNVIPKVLNTQVKYVYPE 241 Query: 284 KS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 K H R AT GA+ + G + Y D+ + Sbjct: 242 KRVHPHLFRHSFATQLLQKGASIKIVQELLGHANLSTTSIYLHITDKEKRAA 293 >gi|210616044|ref|ZP_03290916.1| hypothetical protein CLONEX_03135 [Clostridium nexile DSM 1787] gi|210149952|gb|EEA80961.1| hypothetical protein CLONEX_03135 [Clostridium nexile DSM 1787] Length = 400 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 57/369 (15%), Positives = 115/369 (31%), Gaps = 68/369 (18%) Query: 19 GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEY 78 G+ I F G+R L + A+ + E+ + + TL + Sbjct: 20 GRYIARFTSKTGKRKTLYDFKLNELKRKLREAVY----EDEHGLNGNGESITLNAWYVTW 75 Query: 79 RKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTP---SSAI 134 + ++ + + SY++ ++ G + I T H++ + + + Sbjct: 76 TELYKKKTVKMTTIYKNHSYYNSRVKNSIGKMYLQDIKTYHVQKFLNDLIDSGLAHGTVS 135 Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194 + + AV EY+ NPC+ VE PK + R T+E+ ++F +F S Sbjct: 136 NIRFMLSDMLDKAVLSEYIRKNPCIGVEMPKEVKKERRVLTREEQEKFFTFASSYIHI-N 194 Query: 195 AFEFLLYSGLRCSDSCRAGVQH----------------------LQNNIFSIKTQKT-GT 231 +F + +G R + + ++ + F T KT + Sbjct: 195 VLKFAVTTGCRIGEVLGLKWEDCDFEKREIIINKTIHYSKASSPVEGSKFFYTTAKTISS 254 Query: 232 IITVELPDGFMKLLAMTPIGK------------------ETFFINNDKQKMNATQFSIWF 273 + + D ++L + + F +D + + Sbjct: 255 NRVIPMTDEVYEILQNQKMKQTEQKMWKRSIWKQHKEFQNLVFTCSDGSPVYYYNVNSAI 314 Query: 274 KAKATK--------AGVNK---------SAHGVRKFSATISADAGATAHELMATYGWKTV 316 K K A K + H +R AT + G + G T+ Sbjct: 315 KDYVEKINVIEIELAKEEKREPKIFELFTCHTLRHTYATRCYENGVDQQVVQKLLGHSTL 374 Query: 317 DQ-AETYTK 324 + YT Sbjct: 375 AMTTDLYTH 383 >gi|270307506|ref|YP_003329564.1| site-specific recombinase, phage integrase family [Dehalococcoides sp. VS] gi|270153398|gb|ACZ61236.1| site-specific recombinase, phage integrase family [Dehalococcoides sp. VS] Length = 332 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 52/272 (19%), Positives = 98/272 (36%), Gaps = 32/272 (11%) Query: 85 GSLAVNSRISFESYFDQIIR---KSGDFDYRKITTKHIRSGVESRKHTPSSAIQFL---T 138 G L+ + ++ + I ++G +IT + ++ + T +SA L Sbjct: 41 GQLSPATIHNYSYMVGKFIDFCSRNGVSTPPQITQLVVCLFIQELQMT-NSAQSVLDYFK 99 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRL 194 +R W + ++I+P ++ PK I+P+ KE Q S + + + Sbjct: 100 QVRRFINWLRENDQISIDPLKNIRLPKVPRRIIQPFNKEQCQTLLDLVSLPTLEARRNKA 159 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------ELPDGFMKLL 245 + +G+RC + ++ L +IK G V L + + + Sbjct: 160 ILMVFMDTGIRCQELADMKLEDLNFETETIKIFGKGAKERVVRISRRTQKALLEYQFERM 219 Query: 246 AMTPIGKETF-FINNDKQKMNA--------TQFSIWFKAKATKAGV---NKSAHGVRKFS 293 + P K F +++ K + + + KAG+ S H R Sbjct: 220 KLMPNDKCPFVWVSRLKNRYSRKQSHQLTNDGIRRMIENLGKKAGIQNLRCSPHTFRHTF 279 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKG 325 AT+S GA EL + G T+ YT Sbjct: 280 ATMSLLNGAGEFELQSLLGHSTLTMTRRYTAS 311 >gi|16611927|gb|AAL27410.1|AF429957_1 XerC-like protein [uncultured bacterium] Length = 312 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 46/293 (15%), Positives = 105/293 (35%), Gaps = 27/293 (9%) Query: 56 PKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT 115 PK ++ P L L+ +Y + + + E+ ++ ++G D ++T Sbjct: 2 PKPLKLSRPTPN---LDALLGQYLREREAHGKSPATVHWQETAARLLMEETGARDLAELT 58 Query: 116 TKHIRSGVESRKH----------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK 165 + +++ + S+ Q+ ++R KW ++ Y + L + + Sbjct: 59 PAILLDWFAAKRSQGGRGRRISVSISTLSQYERALRPFLKWLYQRGYTQTDLSLELPHYR 118 Query: 166 RKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEF---LLYSGLRCSDSCRAGVQHLQNNIF 222 + ++P+T ++++ F + SE R LL +G+R ++ + + Sbjct: 119 PPKQVVQPFTPDELRAFFAAASEPPNARRKLALYRLLLDTGIRRGEAVSLQLDAIYWRER 178 Query: 223 SIKTQ-KTGTIITVELPDGFMKL-------LAMTPIGKETFFINNDKQKMNATQFSIWFK 274 +++ + KTG I + G+ T F++ + A + + Sbjct: 179 TMRVEGKTGGRIVYFSERSLRAINEYLNNERRPRRPGEATLFLDRHGDPLRAGEITQETI 238 Query: 275 AKATKAGVNKS---AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 A +AG+ + H R A AG L G ++ Y Sbjct: 239 RIARRAGIMRDHVGPHTFRHTFAVEYLKAGGDLRSLQVLLGHSKLETTSIYLH 291 >gi|254303994|ref|ZP_04971352.1| bacteriophage integrase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148324186|gb|EDK89436.1| bacteriophage integrase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 370 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 44/294 (14%), Positives = 99/294 (33%), Gaps = 31/294 (10%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIR-KSGDFDYRKITTKHIRSGVESR- 126 T L ++ + ++ N+ +E+ + ++ + +IT +++ Sbjct: 71 TFGNLFKDWIFNFKKMDVSDNTFSVYETTYRLRLKDYNIANKRANQITLNDLQAYFNELQ 130 Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK-RKTEGIRPWTKEDMQQFKS 184 K T + + K+A+ Q + + C + PK +K E ++K++ + Sbjct: 131 EKFTAGQIKRTYIHIHSCIKFAIFQGVMVRDYCGGIILPKEKKKEKYNVFSKQEQELILK 190 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ----------------- 227 ++ F Y+GLR + +++NI +I Q Sbjct: 191 TLNKKDVVDCLIYFTFYTGLRLGEVLALRWDDIKDNILTINRQYNKRVEVIDIGKNNLTY 250 Query: 228 -----KTG-TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281 KT + + LP + LL P + F + + + + + Sbjct: 251 EFKDLKTKNSKREIPLPIKILDLLKDLPKQFDLIF-TINGKPFDRKRPQRRMISLCKTLK 309 Query: 282 VN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGI 333 + +S H +R AT + + + G + + YT +L I Sbjct: 310 IEYRSFHSIRHSYATRLFELDIPIKTVQSLMGHSDMSTTMDIYTHVMKDKKLEI 363 >gi|311693141|gb|ADP96014.1| site-specific tyrosine recombinase XerC [marine bacterium HP15] Length = 310 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 29/257 (11%), Positives = 80/257 (31%), Gaps = 20/257 (7%) Query: 88 AVNSRISFESYFDQIIRKSGDFDYRKITT------KHIRSGVESRKHTPSSAIQFLTSMR 141 + + S+ ++ G + + + + + S + L++ R Sbjct: 23 SPRTCDSYHRDLLRLADWLGRSGFVAWQRVTNHDLRRYVATLSREGLSGRSIARHLSATR 82 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS---QPRLAFEF 198 +++ +R++ + NP L + PK R + + + + FE Sbjct: 83 RFYQFLLREKLASDNPALDIRAPKSGRRLPRVADVDQLNHLLDGQPDDPLEVRDLCMFEL 142 Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPI------- 250 + SGLR ++ + + ++ K G + + + + Sbjct: 143 MYSSGLRLAELASLDLDTVDVRSGEVRVMGKGGKERLLPVGRKAIAAIQAWVPYRAALAN 202 Query: 251 -GKETFFINNDKQKMNATQFSIWFKAK--ATKAGVNKSAHGVRKFSATISADAGATAHEL 307 G+ F++ ++++ + A H +R A+ ++ + Sbjct: 203 DGEAALFVSQRGERLSHRSIQARLSRWGISRGADQKLHPHLLRHSFASHMLESSGDLRAV 262 Query: 308 MATYGWKTVDQAETYTK 324 G + + YT Sbjct: 263 QELLGHADIATTQVYTH 279 >gi|253580998|ref|ZP_04858259.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251847661|gb|EES75630.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 312 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 42/280 (15%), Positives = 93/280 (33%), Gaps = 27/280 (9%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIR-KSGDFDYRKITTKHIRSGVESRKH 128 L ISEY K+ L + ++ Q D+ + +T + + +K+ Sbjct: 7 LSNFISEYLKTCETIKKLDSKTIKAYRIDLSQFHTFMLPQEDFTEKSTLNSFLSLLHKKY 66 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE-RPKRKTEGIRPWTKEDMQQFKS--- 184 P +A + + +++ F + V +E ++ NP + + + R ++ F Sbjct: 67 KPKTAKRKIATLKAFFHYLVYEESLSQNPFEKLNVKFREPQVLPRIVPNTIIEIFLRTMY 126 Query: 185 ----------FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT 234 ++ + E L +G+R S+ C + + + I G+ Sbjct: 127 KQKKLAPTTYKYNSILRDIAVIELLFATGVRVSELCSLTLSQIDFTTYKIIINGKGSKER 186 Query: 235 V---------ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284 + E+ + FFIN ++ + A ++ Sbjct: 187 ILQIGNEDVKEILSEYYAAFKTDISKTGWFFINRLHKRYSEESVRSMIVKYLKLAAIDMH 246 Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 + H R AT+ ++ + G ++ E YT Sbjct: 247 ITPHMFRHSFATLLLESDVDIRYIQRMLGHSSIKTTEIYT 286 >gi|189460471|ref|ZP_03009256.1| hypothetical protein BACCOP_01112 [Bacteroides coprocola DSM 17136] gi|189432715|gb|EDV01700.1| hypothetical protein BACCOP_01112 [Bacteroides coprocola DSM 17136] Length = 379 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 46/238 (19%), Positives = 85/238 (35%), Gaps = 16/238 (6%) Query: 110 DYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169 +R + +S+K +SA + ++ R + K A ++ + N ++R + Sbjct: 135 RFRSYLLNTAKLRDDSKKLKQNSAAGYFSTFRGMLKEAYKKRMLKENINDFLDRIPEEET 194 Query: 170 GIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIK 225 I T+ ++ + R A F +G R SD + + + K Sbjct: 195 EINYLTEHELGLIINNECPIPVLRKAIIFACITGFRRSDILALKWEDIKELPKGGWCVFK 254 Query: 226 T-QKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284 QKT + V + D M+++ P G+ F + + K G+ K Sbjct: 255 RMQKTKNMANVPIGDDLMEVI--GPRGEGLVF-----NGLTTYMLTYPMKRWFKSIGIKK 307 Query: 285 S--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340 H R AT+S G + G K YTK + L + ++R+S Sbjct: 308 DLHFHCTRHTYATLSLALGTDIITIKNVLGHKQESTTMRYTKVVN--PLKEQAAKRLS 363 >gi|29840494|ref|NP_829600.1| site-specific tyrosine recombinase XerD [Chlamydophila caviae GPIC] gi|29834843|gb|AAP05478.1| integrase/recombinase XerD [Chlamydophila caviae GPIC] Length = 298 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 39/227 (17%), Positives = 73/227 (32%), Gaps = 22/227 (9%) Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 + RK S+ + L +++V F++ + + P +E PK T ++ Sbjct: 59 FVQQLHKRKEAESTLARRLIALKVFFRFLKEAKLLDHPP--LIEHPKIWKRLPSVLTPKE 116 Query: 179 MQQFKSFW------SEGSQPRLAFEFLLY-SGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231 + S S A LY +G+R S+ C + + ++ + T K Sbjct: 117 VDALLSAAQQSKTSPIISARDTAILLTLYSTGIRVSELCDLCISDVSDDFLRV-TGKGSK 175 Query: 232 IITVELPDGFMKLLAM-----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKA 280 V L K + + F++ ++ + A + Sbjct: 176 TRLVPLGKVACKAIDAYLCPFRETFQKLHPEEHHLFLSVRGHRLERSCVWRRIHYYAKQV 235 Query: 281 GVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 + S H +R AT D A + G + E YT A Sbjct: 236 THKRVSPHSLRHAFATHLLDNKADLRIIQEMLGHARIASTEIYTHVA 282 >gi|125973642|ref|YP_001037552.1| phage integrase [Clostridium thermocellum ATCC 27405] gi|125713867|gb|ABN52359.1| phage integrase [Clostridium thermocellum ATCC 27405] Length = 301 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 41/272 (15%), Positives = 91/272 (33%), Gaps = 27/272 (9%) Query: 76 SEYRKSAHWGSLAVNSRISFESYFDQIIRKSG-----DFDYRKITTKHIRSGVESRKHTP 130 S Y S + ++ ++ + + DFD IT IR + T Sbjct: 18 SAYLMS---IDKSDSTIKTYIEHIQAFAKWFEETNCIDFDPAVITEIDIRDMRSYLQGTR 74 Query: 131 ----SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI-RPWTKEDMQQFKSF 185 ++ L S++ F + ++Y+ NP ++ + K ++ I + ++ + + Sbjct: 75 HLKETTINLRLASLKCYFSFLESEKYIKHNPARNIRKIKLQSPNIAKSLDEQTYRALRRH 134 Query: 186 -WSEGSQPRLA-FEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIK-TQKTGTIITVELPDG 240 + G++ +A FE G+R + + + ++K K + + L Sbjct: 135 VYRGGNKAHIAMFEIFTRCGVRNFELINIRLTDFDISDRKGTLKIVGKLNKVRYIPLHKD 194 Query: 241 FMKLL-------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKF 292 + + FI+ K + FK + G+ + + H R + Sbjct: 195 VRDAINNWMEIRKNIKTEYDNLFISERKTPYTRSGIWKIFKKYCEQIGITDVTIHSFRHY 254 Query: 293 SATISADAGATAHELMATYGWKTV-DQAETYT 323 G + G + A+ YT Sbjct: 255 FCRTLLKNGVDISVVAKLAGHSSGFVTAQVYT 286 >gi|282852712|ref|ZP_06262054.1| toxin-antitoxin system, toxin component, PIN family [Lactobacillus gasseri 224-1] gi|282556454|gb|EFB62074.1| toxin-antitoxin system, toxin component, PIN family [Lactobacillus gasseri 224-1] Length = 386 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 65/365 (17%), Positives = 131/365 (35%), Gaps = 55/365 (15%) Query: 11 VTKERTRHGKIIYYFRKGHGRRIRLPYPHE--STFIPAYMSALTGSTPKREYINSPR--- 65 +T+ +T++GK Y F+ G+ + +Y AL ++ + Sbjct: 7 ITRYKTQNGKKRYRFKVYVGKDEETGNSIQARKQGFKSYDDALKSYFEIKDKVAKGTYTG 66 Query: 66 --KKPTTLKWL----ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119 K L + Y+ + +L+ N+++ F + I+ + G+ KITT Sbjct: 67 NENKKHKFSELYEMWLENYKNTVKVSTLS-NTKLFFRLH---ILPELGNLYIEKITTFKC 122 Query: 120 RSGVESR-KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP---WT 175 + V K P + + +FK+AV + +A NP SV +PK + E ++ Sbjct: 123 QKIVNKWFKELPKTYKVYTNLASNIFKFAVNNDLIAKNPMKSVIKPKLQVEKKPFTNFYS 182 Query: 176 KEDMQQFKSFWSE--GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-- 231 K ++ F E G + + F L Y+G+R ++ + + +IK KT T Sbjct: 183 KNELNIFLKEAKECKGLKVYMLFRLLAYTGMRRGEALALKWSDIDFSNQTIKINKTVTTA 242 Query: 232 --IITVELPDGFMKLLAMTPIGKETF-FINNDKQKMNATQFS------------------ 270 + I ++T +++ +++ F Sbjct: 243 EHAALIIGTPKTKASYRTIAIDRQTIKYLSGWRKEQRKQLFQLGFNALSDDQLIFSNGDN 302 Query: 271 IWFKAKATK---------AGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320 + + AG+ + HG R A++ +AG ++ G ++ Sbjct: 303 TLIRQATVRKWDQSISKHAGLKYITVHGFRHTHASLLFEAGTPMQDVKERLGHSSITTTM 362 Query: 321 -TYTK 324 YT Sbjct: 363 NIYTH 367 >gi|82703905|ref|YP_413470.1| Phage integrase [Nitrosospira multiformis ATCC 25196] gi|82411970|gb|ABB76078.1| Phage integrase [Nitrosospira multiformis ATCC 25196] Length = 323 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 43/276 (15%), Positives = 92/276 (33%), Gaps = 31/276 (11%) Query: 84 WGSLA-VNSRISFESYFDQII---RKSGDFDYRKITTKHIRSGVE---SRKHTPSSAIQF 136 + +L +R ++ + + + ++R +T H+ + + R + ++ Sbjct: 37 FANLPNDATRRAYNNALKDFMGFTDITRPDEFRSVTRAHVIAWRDELVKRSLSGTTIRHR 96 Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKT-EGIRPWTKED-----MQQFKSFWSEGS 190 L ++ LF++ + V NP V+RP ++ EG P + + S +G Sbjct: 97 LAALSSLFEYLCERNAVTHNPVKGVKRPPVESYEGKTPALGDHQARALLDAPHSLSLKGK 156 Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQ---NNIFSIKT-QKTGTIITVELPDG------ 240 + R LLY LR + CR V+ + + ++ K G + L Sbjct: 157 RDRALLATLLYHALRRDELCRLTVKDFRHERRGVRHLRVLGKGGKTRYIPLHPAASTLIT 216 Query: 241 --FMKLLAMTPIGKETFFINND------KQKMNATQFSIWFKAKATKAGVNKSAHGVRKF 292 F ++ + + + ++ G H +R Sbjct: 217 EYLEAAGHGAEDSAPLFHPVSNNCAGVSSKALTPDGVYKLVREYSSNLGFEIGPHSLRAT 276 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 +AT + D A ++ G + Y R Sbjct: 277 AATNALDHQADISKVQEWLGHANISTTRIYDHRRSR 312 >gi|313204183|ref|YP_004042840.1| integrase family protein [Paludibacter propionicigenes WB4] gi|312443499|gb|ADQ79855.1| integrase family protein [Paludibacter propionicigenes WB4] Length = 293 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 38/275 (13%), Positives = 103/275 (37%), Gaps = 24/275 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIRSGVESR-- 126 +++E+ + + + + ++ +S+ + Q +FD + ++ I+ + S Sbjct: 1 MMNEFLQYLQYEKNYSSHTVLSYNTDLIQFCNFLNVTPDEFDPNSVNSQQIQQWILSLMS 60 Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + + + +++++ + + + + NP L + PK K + + +M Sbjct: 61 VDLSARTLSRKISTLKSFWHFLLSRRLSKHNPTLKIILPKTKKPIPAFFKENEMTAALDN 120 Query: 186 WS-----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPD 239 E ++ RL E +G+R S+ + + ++ +I+ K + + Sbjct: 121 SMKPDSFEYTRNRLILETFYLTGIRLSELLNIQDKDIDHSAGTIRVIGKRNKERIIPIDK 180 Query: 240 GFMKLLAMTPIGK--------ETFFINNDKQKMNATQFSIWFKA-KATKAGVNK-SAHGV 289 + + + F+ N+ +KM + + ++K S H + Sbjct: 181 SLINDIERYITLRNESIDIFEPNLFVRNNGKKMYPKMLYNIVHENMSEVSSLHKRSPHVL 240 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 R AT + GA + + G ++ + YT Sbjct: 241 RHTFATSLLNGGADINAVKELLGHSSLSATQVYTH 275 >gi|310779869|ref|YP_003968201.1| integrase family protein [Ilyobacter polytropus DSM 2926] gi|309749192|gb|ADO83853.1| integrase family protein [Ilyobacter polytropus DSM 2926] Length = 362 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 54/301 (17%), Positives = 94/301 (31%), Gaps = 35/301 (11%) Query: 56 PKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKI 114 + + T Y +A + E F + I+ + KI Sbjct: 40 ESEHKLKGSKSVNMTFTSFYDLYMGDIK-PRVAETTYHLKELIFKNSILPYFQNMKMSKI 98 Query: 115 TTKHIRSGVES-------RKHTPSSAIQFLTS---MRVLFKWAVRQEYVAINPCLSVERP 164 T IR + P A + L AV + NPC Sbjct: 99 TPIIIRDFQNKLITGTNPKTGNPYKAHYIQKINAQLSALMNHAVNFYELKENPCKKAGPL 158 Query: 165 KRK-TEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS 223 K + + I WT E+ ++F AF L ++G+R + + + Sbjct: 159 KLRYDKKINFWTLEEFEKFTEVIEHKPMSYTAFNILFWTGIRVGELLALTLSDVDLKKGI 218 Query: 224 IKTQKT----------------GTIITVELPDGFMKLLAMTPIGKETFFINNDKQ--KMN 265 +K K+ + T++LP ++LL K + + + + M Sbjct: 219 MKIDKSYARLKGKNIIKSTKNESSERTIKLPQNLVELLK--KYVKMMYGLTQEDRLFPMT 276 Query: 266 ATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYT 323 F KAGV K + H +R A++ ++G + G VD TY+ Sbjct: 277 KEVFKNDLVRYCDKAGVKKITPHDLRHSHASLLINSGINPLAISKRLGHAKVDMTLNTYS 336 Query: 324 K 324 Sbjct: 337 H 337 >gi|311739716|ref|ZP_07713551.1| tyrosine recombinase XerD [Corynebacterium pseudogenitalium ATCC 33035] gi|311305532|gb|EFQ81600.1| tyrosine recombinase XerD [Corynebacterium pseudogenitalium ATCC 33035] Length = 305 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 36/264 (13%), Positives = 82/264 (31%), Gaps = 21/264 (7%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFLTSMR 141 A + + + + R + + +R + + S+ + + + Sbjct: 32 RGRAEATVRGYRADLRDLARSVPT--FAEFDLNSLRQWLAEAVTEGKSRSTLARRTAAAK 89 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM-----QQFKSFWSEGSQPRLAF 196 WAVR+ ++ + + PK E + + Sbjct: 90 GFSTWAVREGHLKRDVAARLVTPKVGRHLPTVLAPEQAGELMGNAVSADEVHFLRDSAIL 149 Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-----ELPDGFMKLLA----- 246 E L SG+R ++ R + + ++ G V D + + Sbjct: 150 ELLYASGMRVAELVRLDLGDIDFQRGTLHVTGKGNKQRVVPFGHAAEDALKQWIDKGRGE 209 Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAH 305 + E F+ + +++ Q + A G + HGVR +AT + GA Sbjct: 210 IASAETEAVFVGSRGGRIDQRQVRRIVEKAAKVTGAQGLTPHGVRHSAATHLLEGGADLR 269 Query: 306 ELMATYGWKTVDQAETYTKGADRI 329 + G +++ + YT + + Sbjct: 270 VVQELLGHSSLNTTQIYTHVSAQR 293 >gi|329947868|ref|ZP_08294800.1| phage integrase, SAM-like domain protein [Actinomyces sp. oral taxon 170 str. F0386] gi|328523492|gb|EGF50590.1| phage integrase, SAM-like domain protein [Actinomyces sp. oral taxon 170 str. F0386] Length = 306 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 44/295 (14%), Positives = 94/295 (31%), Gaps = 32/295 (10%) Query: 68 PTTLKWLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSG--------DFDYRKITTKH 118 P T L++ Y + L+ ++ ++ ++ G + Sbjct: 2 PRTRADLLAAYHRYLSLQRDLSQHTARAYLVDICDLLSFLGVGEGDAPIGAALATLDLAD 61 Query: 119 IRSGVESRK---HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175 +R + + H+ ++ + S+R WA + + + + P+ T Sbjct: 62 LRDWLAALAASGHSRATLARRSASVRTFSAWAFEEGILTSDVAARLRAPRVDNRLPGVLT 121 Query: 176 KEDMQQFKSFWS--------EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT- 226 + Q + + E L +G+R S+ V L ++ +++ Sbjct: 122 AQQAAQLLQTAADLAADGDILAVRDLAIAETLYATGVRVSELVGLDVTDLDHSQRTLRVL 181 Query: 227 QKTGTIITVELPDGFMKLLA---------MTPIGKETFFINNDKQKMNATQFSIWFKAKA 277 K TV + L P F+ ++++ Sbjct: 182 GKGRKERTVPYGLPAARALEGWLSRREEICAPDAGTALFLGARGRRIDPRAARDIVHRLC 241 Query: 278 TKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIR 330 AGV + HG+R +AT GA + G ++ + YT A+R+R Sbjct: 242 AAAGVPDLGPHGLRHSAATHVLSGGADLRSVQELLGHSSLATTQRYTHVSAERLR 296 >gi|237801966|ref|ZP_04590427.1| phage integrase family site specific recombinase [Pseudomonas syringae pv. oryzae str. 1_6] gi|331024824|gb|EGI04880.1| phage integrase family site specific recombinase [Pseudomonas syringae pv. oryzae str. 1_6] Length = 318 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 47/270 (17%), Positives = 93/270 (34%), Gaps = 30/270 (11%) Query: 89 VNSRISFESYFDQIIR---KSGDFDYRKITTKHI---RSGVESRKHTPSSAIQFLTSMRV 142 +R ++++ +G ++R + H+ R+ +E R + ++ + L ++ Sbjct: 38 PRTRRAYQADLRDFCSFVGLAGAEEFRAVNRSHVLAWRAQLERRALSGATIRRKLAALAS 97 Query: 143 LFKWAVRQE-YVAINPCLSVERPKRKT-EGIRPWTKED-----MQQFKSFWSEGSQPRLA 195 LF + + NP V RPK +T EG P +D + + +G + R Sbjct: 98 LFDYLLNNNALAGGNPVHGVARPKVETNEGKTPALGDDQAKRLLDAPDAESLQGVRDRAI 157 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ---KTGTIITVELPDGFMKLLAMTPIGK 252 LLY GLR + LQ + K G I + L + + + + Sbjct: 158 LAVLLYHGLRREELSLLQTGDLQERRGVKHLRIHGKGGKIRYLPLHPVAAERIYVYLVRD 217 Query: 253 E-------TFFINNDKQ----KMNATQFSIWFKAKATKAGV---NKSAHGVRKFSATISA 298 F + + + A+ A + HG+R +AT + Sbjct: 218 GDRALTPGALFRSQRGKTSGTGITGKGVYGVVTKWASAAQIRVDGLGVHGLRATAATNAL 277 Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADR 328 + A ++ G + Y + R Sbjct: 278 EHDADIAKVQIWLGHANISTTRLYDRRGQR 307 >gi|288573040|ref|ZP_06391397.1| integrase family protein [Dethiosulfovibrio peptidovorans DSM 11002] gi|288568781|gb|EFC90338.1| integrase family protein [Dethiosulfovibrio peptidovorans DSM 11002] Length = 263 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 48/242 (19%), Positives = 87/242 (35%), Gaps = 13/242 (5%) Query: 96 ESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH---TPSSAIQFLTSMRVLFKWAVRQEY 152 + F + + G D I T IR+ V S P+S + L++++ L K+ + Sbjct: 1 MAQFAEFLETQGVSDVSDIATGEIRAFVRSLSGYGFAPASVGRKLSAIKSLMKYLFEERV 60 Query: 153 VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRLAFEFLLYSGLRCSD 208 + +P V P+R R + E + + +G + E L GLR ++ Sbjct: 61 IEKDPSGRVRGPRRSDRLPRAMSVEQVSRMIDCAYDDDEQGLRNGALIELLYGCGLRVAE 120 Query: 209 SCRAGVQHLQNNIFSIKTQKTGT-IITVELPDGFMKLLAMTPI----GKETFFINNDKQK 263 + ++ +K G+ V + L G E F + Sbjct: 121 VVSVRWEDVEIEERWLKVMGKGSKERAVPFGSMAQRALTGLRALSMPGDEYVFPGKKRGC 180 Query: 264 MNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 + A A KAGVN + H +R AT + GA+ + G + + + Y Sbjct: 181 LTVRTVHRVVVAAAAKAGVNGVTPHSLRHSFATHLLEGGASLRVVQELLGHEHLTTTQRY 240 Query: 323 TK 324 + Sbjct: 241 LR 242 >gi|168186645|ref|ZP_02621280.1| phage integrase [Clostridium botulinum C str. Eklund] gi|169295376|gb|EDS77509.1| phage integrase [Clostridium botulinum C str. Eklund] Length = 393 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 52/368 (14%), Positives = 121/368 (32%), Gaps = 53/368 (14%) Query: 16 TRHGKIIYYFR--KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73 R YYF K G+ ++ +T A S + + ++ Sbjct: 7 KRGSSWYYYFNVCKEEGKYKKVCRKGGATKKEAETSLRKALNEYESTGSIKKDTNISVSD 66 Query: 74 LISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132 + + + +L + ++ + II + G++ + ++ ++ + S+K + Sbjct: 67 YLKYWLEENVKTNLKYRTYTCYKRVIENHIIPQFGNYKLKNLSALELQEFLNSKKKNGYT 126 Query: 133 AI---QFLTSMRVLFKWAVR-QEYVAINPCLSVERPKRKT----EGIRPWTKEDMQQFKS 184 F + K AV ++ NP L V PK T E I T +++ Q Sbjct: 127 KNTLGNFYGVLSGSLKMAVHPYGFIKENPMLYVSMPKFNTKQSDEKISVLTIDEVNQILD 186 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK---------------- 228 + GS + + ++GLR S+ C ++ ++ +K Sbjct: 187 RFPFGSSFYINVQIAFHTGLRASEVCSLTWDNIAFENKTLTVEKNLLKQGHEWCFDTPKT 246 Query: 229 TGTIITVELPDGFMKLL-------------------------AMTPIGKETFFINNDKQK 263 + T+ + D + +L + + + Sbjct: 247 KSSNRTIRIGDTLINILKKHNLWQKENQLRYGKYYAKNTYDFHGKTYTTDLISTKENGEL 306 Query: 264 MNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETY 322 +++ + G+ + H +R AT+ + GA ++ G + +TY Sbjct: 307 VSSDSLKYLSRVVNYDLGIKFNFHALRHTHATMLLEGGANIKDIQKRLGHSKLATTMDTY 366 Query: 323 TKGADRIR 330 + ++I+ Sbjct: 367 SHVTEKIQ 374 >gi|224827079|ref|ZP_03700176.1| integrase family protein [Lutiella nitroferrum 2002] gi|224600745|gb|EEG06931.1| integrase family protein [Lutiella nitroferrum 2002] Length = 330 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 47/309 (15%), Positives = 93/309 (30%), Gaps = 23/309 (7%) Query: 28 GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSL 87 G+R R +P +S + A+ + + + R+ TL LI + + Sbjct: 19 RGGKRFRKTFPLKSEAL-AWEAWVKSQVAQSPEWEPERRDLRTLAELIELWYQH---HGC 74 Query: 88 AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLT---SMRVLF 144 + S + G+ + + + R + +A +R +F Sbjct: 75 NLRSAADTLRRLLAMAEAMGNPVADRFSAEDFAKYRAQRLESGVTANNMNREHAYLRSVF 134 Query: 145 KWAVRQE-YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS--EGSQPRLAFEFLLY 201 R + NP V + K + + T + +Q + L + L Sbjct: 135 NELKRLGLWKKENPLAMVRQFKIPEKELSWLTVDQIQTLLAELENCRNKDALLVAKICLS 194 Query: 202 SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK 261 +G R ++ L+N K+G TV + +G L +G Sbjct: 195 TGARWGEAEGLRKSQLRNQSLQFTGTKSGKNRTVPVAEGLYDELKAKDVGSTDRLF---- 250 Query: 262 QKMNATQFSIWFKAKATKAGV----NKSAHGVRKFSATISADAGATAHELMATYGWKTVD 317 F+ + G+ + H +R A+ G L G +++ Sbjct: 251 -----QYCWGAFRDAVERCGLVLPDGQMTHVLRHTFASHFVMNGGNILVLQKILGHQSLT 305 Query: 318 QAETYTKGA 326 Y A Sbjct: 306 MTIRYAHLA 314 >gi|254515505|ref|ZP_05127565.1| tyrosine recombinase XerC [gamma proteobacterium NOR5-3] gi|219675227|gb|EED31593.1| tyrosine recombinase XerC [gamma proteobacterium NOR5-3] Length = 311 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 38/269 (14%), Positives = 95/269 (35%), Gaps = 23/269 (8%) Query: 77 EYRKSAHWGSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIRSGVESRKHT---P 130 EY +S L+ ++ ++ D ++ + H+R + T P Sbjct: 20 EYLRSVR--RLSSHTVTAYRRDLDSFEDFCQQHSVTGCSDVQESHVRQWLAQGHRTGLAP 77 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---S 187 +S + L+++R F+W NP L+V+ P+++ + + + + Sbjct: 78 NSLQRRLSALRAYFQWESSDTGQRRNPALAVQAPRKRRKLPGTLEADQVGVYLRADDNDP 137 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII-TVELPDGFMKLLA 246 + E L SGLR ++ + + + I G+ TV + ++ + Sbjct: 138 LQLRDLAMAELLYSSGLRLAELRAVNIHDIDRSQSLISVTGKGSKTRTVPVGRIAIEAID 197 Query: 247 M---------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSAT 295 + ++ F++ ++++ + A + G+ + H +R A+ Sbjct: 198 AYLPHRPTPTSAADEQALFVSGRGRRISERSIQARIQLLAQRNGLGRDVHPHMLRHSFAS 257 Query: 296 ISADAGATAHELMATYGWKTVDQAETYTK 324 ++ + G + + YT Sbjct: 258 HLLESSGDLRAVQELLGHSDISTTQIYTH 286 >gi|326333662|ref|ZP_08199899.1| putative tyrosine recombinase XerC [Nocardioidaceae bacterium Broad-1] gi|325948568|gb|EGD40671.1| putative tyrosine recombinase XerC [Nocardioidaceae bacterium Broad-1] Length = 320 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 41/311 (13%), Positives = 99/311 (31%), Gaps = 29/311 (9%) Query: 52 TGSTPKREYINSPRKKPTTLKWLISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDF- 109 + E ++ + L+ +Y + + L+ ++ ++ ++ +G Sbjct: 3 ADQEAEAEGGSADAELSEAYAALLGDYERHLSAERGLSDHTVRAYLGDVRSLLDHAGRMG 62 Query: 110 --DYRKITTKHIRSGVESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP 164 D I + +RS + + H+ ++ + T+ RV W VR ++ ++ P Sbjct: 63 RTDPEGIDLRTLRSWLAKQQTTGHSRTTLARRATAARVFCGWLVRTGRAQVDAGAALGSP 122 Query: 165 KRKTEGIRPWTKEDMQQF--------KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH 216 K ++++ + + G + E L +G R + + Sbjct: 123 KAHRTLPPVLRPDEVESLIAAAIAAAEDGTAVGMRDIAVLEMLYATGSRVGELVGLDLDD 182 Query: 217 LQNNIFSIKT-QKTGTIITVELPDGFMKLLAM----------TPIGKETFFINNDKQKMN 265 + ++ K V + L T F+ +++ Sbjct: 183 VDYERRVVRVLGKGRKERMVPFGGPAARALDRWIVRGRPQLVTESSGPALFLGARGGRLD 242 Query: 266 ATQFSIWFKAKATK--AGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 + + HG+R +AT + GA + G ++ + YT Sbjct: 243 QRAVRTLVHRRLADVPGAPDLGPHGLRHSTATHLLEGGADLRSVQELLGHASLATTQIYT 302 Query: 324 K-GADRIRLGI 333 +DR+R Sbjct: 303 HVSSDRLRKAY 313 >gi|83954474|ref|ZP_00963185.1| tyrosine recombinase [Sulfitobacter sp. NAS-14.1] gi|83840758|gb|EAP79929.1| tyrosine recombinase [Sulfitobacter sp. NAS-14.1] Length = 315 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 51/276 (18%), Positives = 84/276 (30%), Gaps = 28/276 (10%) Query: 85 GSLAVNSRISFESYFDQII--------RKSGDFDYRKITTKHIRSGVESRKHT---PSSA 133 A N+ +++ + G KIT +R+ + + P S Sbjct: 28 KGAAENTITAYQGDLVDFLAFMTLHKGDSQGLGALSKITISDMRAWMAQTRSGDVGPRSM 87 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS-------FW 186 + L++++ ++W +E LS PK + RP + Q Sbjct: 88 ARKLSAVKAFYRWLAEREGFEPTAVLSTRSPKFPKKLPRPLAIDAAQAMIDSVEMQSRHA 147 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM---- 242 ++ L GLR S++ K G V + Sbjct: 148 WVAARDVAVLTLLWGCGLRISEALGLKGADAPLPEVLRIIGKGGKERVVPVLPAARDAVE 207 Query: 243 KLLAMTPIGKE---TFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATIS 297 L + P GKE F + A S + G+ SA H +R AT Sbjct: 208 AYLRVCPFGKERDAPLFRAVRGGPLAARAISQVMADARMQLGLPASATPHALRHSFATHL 267 Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 DAG + G ++ + YT D RL Sbjct: 268 LDAGGDLRAIQELLGHASLSTTQAYT-AVDTARLMD 302 >gi|312887689|ref|ZP_07747278.1| integrase family protein [Mucilaginibacter paludis DSM 18603] gi|311299784|gb|EFQ76864.1| integrase family protein [Mucilaginibacter paludis DSM 18603] Length = 420 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 53/324 (16%), Positives = 109/324 (33%), Gaps = 46/324 (14%) Query: 44 IPAYMSALTGSTPKREYINS-----PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESY 98 + AY A+ P + T + L + Y LA + ++ + Sbjct: 78 VDAYQEAIIQQKPLTPENIRNTFLGQDEAAHTFQDLFN-YHNEYEKQVLAKGTMKNYYTT 136 Query: 99 FDQIIR-----------KSGDFDYRKITTKHIRSGVESRKHTPSSAI-----QFLTSMRV 142 D I++ Y+ I + +K P + L + Sbjct: 137 QDYILQFLKKSKKPAGWDITQLSYKFIADFELFLRTFKKKDDPQPLNNNGVMKHLERFKK 196 Query: 143 LFKWAVRQEYVAINPCLSVE-RPKRKTEGIRPWTKEDMQQFKSFWSEGSQ---PRLAFEF 198 + AV E++ +P V+ + K ++ T+E++ ++ + + R F F Sbjct: 197 MINMAVTIEWLDKDPF--VKHKLKFTSKERGYLTEEELAVVETKELKTDKLIYVRDLFLF 254 Query: 199 LLYSGLRCSDSCRAGVQHLQNN-----IFSIKTQKTGTIITVELPDGFMKLLAM-----T 248 Y+GL D+ +L + QK+ + + L +++A Sbjct: 255 GCYTGLSYIDAINLTANNLMIGIDKEHWLLTQRQKSSKPVKLPLLPLAAQIIARHRHDPR 314 Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSAT-ISADAGATAH 305 I T F + ++ + + + K A + G++K S H R AT ++ G Sbjct: 315 AISNGTIF-----RPISNQKLNDYLKDLARECGIDKNFSFHLARHTFATTVTLANGVPIE 369 Query: 306 ELMATYGWKTVDQAETYTKGADRI 329 + G + + Y K +R Sbjct: 370 TVSKMLGHTKISTTQIYAKVVERK 393 >gi|90962617|ref|YP_536533.1| Phage integrase [Lactobacillus salivarius UCC118] gi|90821811|gb|ABE00450.1| Phage integrase [Lactobacillus salivarius UCC118] Length = 381 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 59/307 (19%), Positives = 105/307 (34%), Gaps = 57/307 (18%) Query: 67 KPTTLKWLISEYRK---------SAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK 117 K ++ E+ + + L N + + D KIT + Sbjct: 66 KSGKFGDVLDEWLALHKETVKASTWQFIELRAN---------NHVRPYFKDMYVDKITLR 116 Query: 118 HIRSGVES-RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK---TEGIR- 172 H + V K P + + L+ ++ +A+R + NP L V +PK++ ++ Sbjct: 117 HCQDFVNKTFKKAPVAYVYSLSIVKNTLDYALRLGMIESNPMLYVIKPKKQASISDKHDN 176 Query: 173 PWTKEDMQQFKSFWSEGS-QPRLAFEFLLYSGLRCSDSCRAGVQHLQ------------- 218 + K+++++F + S + F L YSG+R + L Sbjct: 177 YYNKDELKKFLDVAKDTSLKKYTLFRLLAYSGMRIGECLALTWHDLDYKNNTIAINKTLA 236 Query: 219 --NNIFSIKTQKTGTIITVELPD----------GFMKLLAMTPIG------KETFFINND 260 NN I+T KT V D + + +G K+ F N Sbjct: 237 RTNNGIKIQTPKTKASNRVISLDNETIQVLKMWQLEQRKQLLKVGINAMDSKQLIFSNGK 296 Query: 261 KQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319 + + K A KAG++ + HG R AT+ +G ++ A G V Sbjct: 297 NSFIIVPTVRLAIKQIAKKAGIHSITTHGFRHTHATLLFASGLDIKQVQARLGHSNVQTT 356 Query: 320 -ETYTKG 325 YT Sbjct: 357 LNIYTHA 363 >gi|170719429|ref|YP_001747117.1| site-specific tyrosine recombinase XerC [Pseudomonas putida W619] gi|254799352|sp|B1J1V8|XERC_PSEPW RecName: Full=Tyrosine recombinase xerC gi|169757432|gb|ACA70748.1| tyrosine recombinase XerC [Pseudomonas putida W619] Length = 299 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 33/259 (12%), Positives = 88/259 (33%), Gaps = 19/259 (7%) Query: 85 GSLAVNSRISFESYFDQIIRK------SGDFDYRKITTKHIRSGVESRKHTPSSAIQFLT 138 ++ ++ +++ +++I +G + + + + + + S + L+ Sbjct: 16 RQVSEHTLLAYRRDLEKVIEYCNTQGIAGWGALQIQQLRQLIARQHHQGQSSRSLARLLS 75 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW-TKEDMQQFKSFWS---EGSQPRL 194 ++R L+++ R+ +P + PK + + T +Q + + Sbjct: 76 AVRGLYRYLNREGLCQHDPASGLSAPKGERRLPKVLDTDRALQLLDGGVDDDFIARRDQA 135 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLA------- 246 E SGLR S+ ++HL ++ K G + + + + Sbjct: 136 ILELFYSSGLRLSELTNLDLEHLDLAAGLVQVLGKGGKARVLPVGRKAREAMQQWLRLRG 195 Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAK-ATKAGVNKSAHGVRKFSATISADAGATAH 305 + FI+ ++ + KA + G + H +R A+ ++ Sbjct: 196 IGGPRDGAVFISRQGNRLGPRAIQMRVKAAGERELGQHLHPHMLRHSFASHVLESSQDLR 255 Query: 306 ELMATYGWKTVDQAETYTK 324 + G + + YT Sbjct: 256 AVQEMLGHADISTTQIYTH 274 >gi|83944764|ref|ZP_00957130.1| integrase/recombinase XerC, putative [Oceanicaulis alexandrii HTCC2633] gi|83851546|gb|EAP89401.1| integrase/recombinase XerC, putative [Oceanicaulis alexandrii HTCC2633] Length = 313 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 40/281 (14%), Positives = 84/281 (29%), Gaps = 31/281 (11%) Query: 85 GSLAVNSRISFESYFDQIIRKS-----GDFDYRKITTKHIRSGVESRKHT------PSSA 133 L+ + +++ + G + ++ P + Sbjct: 27 RRLSPRTVEAYDRDLSGLFEFLTGHLGGRLTLKALSDLSSADWRAWLADRRRDGVGPRTL 86 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLS-VERPKRKTEGIRPWTKEDMQQFKSFWS----- 187 + L++ R F + R+ + NP L VE PK + RP ++ + Sbjct: 87 QRGLSAARTFFSYGRRR-WGLDNPALGLVESPKAQRRQPRPVSESAAKSLLKEAETGAKE 145 Query: 188 --EGSQPRLAFEFLLYSGLRCSDSCRA-GVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244 G++ L GLR S++ G H + + K G V + + Sbjct: 146 PWIGARDAAVLSLLYGCGLRISEALALTGRDHPLPEVLRV-AGKGGKTRIVPVLPAVRQA 204 Query: 245 LAM-------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSAT 295 ++ E F + + A + ++ G+ +A H +R AT Sbjct: 205 VSAYVDACPYQIERDEPLFRASRGGPLQARAMQSAMQTMRSRLGLPATATPHALRHAFAT 264 Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336 G + G ++ + Y + I + Sbjct: 265 HLLAHGGDLRAIQDLLGHASLSTTQIYADIEQSRLIAIHAA 305 >gi|119709809|ref|YP_919149.1| phage integrase family protein [Thermofilum pendens Hrk 5] gi|119525915|gb|ABL79286.1| phage integrase family protein [Thermofilum pendens Hrk 5] Length = 278 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 46/275 (16%), Positives = 97/275 (35%), Gaps = 23/275 (8%) Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125 KP ++ L+ Y + N+ ++ S + D K S +E Sbjct: 6 AKPEDIRALVENYLGVVKALR-SHNTYKTYASVLFAYAKFVEDT--GKPDPAAFISWLEK 62 Query: 126 RK-HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 +S +R K+A + + K+ + ED+++ S Sbjct: 63 NGWEKRTSIRTAYVVLRGFHKFA-GLPWT-------LPPVKKPESVPKALGTEDVRKLLS 114 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL---QNNIFSIKTQKTGTIIT-VELPDG 240 S R FLL +GLR S+ + + + + + ++ + G + V L Sbjct: 115 VASPA--EREVIVFLLKTGLRVSEFVHSRCEDVLVVGDGRYMLRVRGKGDKVRLVPLTKD 172 Query: 241 FMKLLAMTPIGKETFFI---NNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATI 296 ++++ G+ + + + ++A A +AG+ + + H +R AT+ Sbjct: 173 VVEIIKARCTGRAGYIFPSPLDPDKPVSARSIQHLVSRVARRAGLQRVTPHTLRHTYATL 232 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 + G + G + + YTK D R+ Sbjct: 233 LLNNGVDIRTIQTLLGHAQLTTTQVYTK-VDVARM 266 >gi|9630419|ref|NP_046850.1| gp33 [Mycobacterium phage D29] gi|300669623|sp|Q38361|VINT_BPMD2 RecName: Full=Integrase gi|3172283|gb|AAC18476.1| integrase [Mycobacterium phage D29] Length = 356 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 59/332 (17%), Positives = 112/332 (33%), Gaps = 36/332 (10%) Query: 24 YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP--RKKPTTLKWL-ISEY-R 79 Y G+R P +++ A E P R+K + + EY + Sbjct: 5 YVSPIDGQRYFGPRNYDNRMDAEAWLASEKRLIDNEEWTPPAEREKKAAASAITVEEYTK 64 Query: 80 KSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR-KHTPSSAIQFL 137 K LA ++ + ++ +I GD ++T +R+ K P++ Sbjct: 65 KWIAERDLAGGTKDLYSTHARKRIYPVLGDTPVAEMTPALVRAWWAGMGKQYPTARRHAY 124 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFE 197 +R + AV + V+ NPC +E+ + T E++ R+A Sbjct: 125 NVLRAVMNTAVEDKLVSENPCR-IEQKAPAERDVEALTPEELDVVAG--EVFEHYRVAVY 181 Query: 198 FLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTII----------------TVELPD 239 L ++ LR + + + ++ ++ + V +P Sbjct: 182 ILAWTSLRFGELIEIRRKDIVDDGETMKLRVRRGAARVGEKIVVGNTKTVRSKRPVTVPP 241 Query: 240 GFMKLLA--------MTPIGKETFFINNDKQKMNATQFSIWFKA-KATKAGVNKSAHGVR 290 ++ M + Q+++ + F+ K A + H +R Sbjct: 242 HVAAMIREHMADRTKMNKGPEALLVTTTRGQRLSKSAFTRSLKKGYAKIGRPDLRIHDLR 301 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETY 322 AT++A AGAT ELM G T A Y Sbjct: 302 AVGATLAAQAGATTKELMVRLGHTTPRMAMKY 333 >gi|118617636|ref|YP_905968.1| site-specific tyrosine recombinase XerC [Mycobacterium ulcerans Agy99] gi|118569746|gb|ABL04497.1| integrase/recombinase XerC [Mycobacterium ulcerans Agy99] Length = 302 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 37/267 (13%), Positives = 86/267 (32%), Gaps = 26/267 (9%) Query: 86 SLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRKHTPSSA---IQFLTSM 140 + ++R ++ ++ D R ++ +RS + + ++ + +++ Sbjct: 21 GRSAHTRRAYLGDLRSLLDYLAGRGADLRALSLPVLRSWLATAAGAGAARTTLARRTSAV 80 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW--------SEGSQP 192 + WAVR+ +A +P ++ PK ++ + + Sbjct: 81 KAFTAWAVRRGLLATDPAARLQVPKAHRTLPAVLRQDQALAAMTAAKSSAQQGDPLALRD 140 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-----ELPDGFMKLLA- 246 RL E L +G+R S+ + + ++ G + LA Sbjct: 141 RLIVELLYATGIRVSELRGLDIDDVDTGHRLVRVLGKGNKQRTAPFGQPAAEALQAWLAD 200 Query: 247 -----MTPIGKETFFINNDKQKMNATQFSIWFKA--KATKAGVNKSAHGVRKFSATISAD 299 T + ++++ Q A + HG+R +AT + Sbjct: 201 GRPALATAESGPALLLGARGRRLDVRQARTVVHQTIAAVDGAPDMGPHGLRHSAATHLLE 260 Query: 300 AGATAHELMATYGWKTVDQAETYTKGA 326 GA + G ++ + YT A Sbjct: 261 GGADLRVVQELLGHSSLATTQLYTHVA 287 >gi|302335890|ref|YP_003801097.1| tyrosine recombinase XerD [Olsenella uli DSM 7084] gi|301319730|gb|ADK68217.1| tyrosine recombinase XerD [Olsenella uli DSM 7084] Length = 321 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 40/293 (13%), Positives = 97/293 (33%), Gaps = 46/293 (15%) Query: 88 AVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKH---TPSSAIQFLTSMR 141 + N+ ++ + + G D ++ I + +E+ +PSS + + +++ Sbjct: 21 SPNTLEAYGRDLGRYVAHLRGRGADDPDAVSRHDIEAYLETLAEGGLSPSSVQRSVAAIK 80 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF-------------KSFWSE 188 ++ V ++ +P + P++ + E + + ++ Sbjct: 81 GFHRFMVSEQITENHPTADLPLPRKALHLPDTLSHEQVFRLLDEPFQDACRPAPRALADG 140 Query: 189 GS---------QPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVEL 237 G+ + + E L GLR S+ C ++ + + + I K V + Sbjct: 141 GTDDSGAARFYRDKAILEVLYGCGLRVSELCSLELRDVLLDDEVLRI-LGKGSKERVVPI 199 Query: 238 P-----------DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-S 285 + + LL P F+ + K++ + G+ Sbjct: 200 LGTAARALGSYLEDWRPLLLKPPRICPAVFLGSRGTKISRQAVFGIVERYGRLTGIEGLH 259 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR--IRLGIKNS 336 H +R AT + G + G ++ + YT DR +R+ + Sbjct: 260 PHSLRHSYATHLLEGGMDLRAVQELLGHASISTTQLYTH-VDRTHVRMAYLAA 311 >gi|323359719|ref|YP_004226115.1| integrase [Microbacterium testaceum StLB037] gi|323276090|dbj|BAJ76235.1| integrase [Microbacterium testaceum StLB037] Length = 301 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 35/267 (13%), Positives = 77/267 (28%), Gaps = 27/267 (10%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG-VESRKHTPSSAIQFLTSMRV- 142 L+ + ++ S + R +GD ++ + +R E+ + A + Sbjct: 18 RRLSPATVRAYRSDLADLARSTGDAPLDELDIEALRQWQWEATSAGRAKATAARRTSAAR 77 Query: 143 -LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS--------QPR 193 WA + + ++P + PKR T + + + + + + Sbjct: 78 AFLSWAREEGLIEVDPSPRLVAPKRGRTLPVVATTSALDEVLAGAAAHAESGEPVALRDH 137 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-----ELPDGFMKLL--- 245 E L SG R S+ C + + +++ + G V + Sbjct: 138 AILEVLYGSGARVSELCGLDLDDVDRESRTLRVRGKGDRERVVPYGVPAARALEAYVVRG 197 Query: 246 ------AMTPIGKETFFINNDKQKMNATQFSIWFKA--KATKAGVNKSAHGVRKFSATIS 297 + F+ ++ H +R +AT Sbjct: 198 RPVLSARGDGVAGPAVFLGARGARLGPRAVHALVSRVVAPVVGAETLGPHALRHSAATHL 257 Query: 298 ADAGATAHELMATYGWKTVDQAETYTK 324 D GA + G ++ + YT Sbjct: 258 LDGGADLRSVQEILGHASLGTTQIYTH 284 >gi|261867252|ref|YP_003255174.1| site-specific tyrosine recombinase XerC [Aggregatibacter actinomycetemcomitans D11S-1] gi|293391244|ref|ZP_06635578.1| tyrosine recombinase XerC [Aggregatibacter actinomycetemcomitans D7S-1] gi|261412584|gb|ACX81955.1| tyrosine recombinase XerC [Aggregatibacter actinomycetemcomitans D11S-1] gi|290951778|gb|EFE01897.1| tyrosine recombinase XerC [Aggregatibacter actinomycetemcomitans D7S-1] Length = 296 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 40/263 (15%), Positives = 92/263 (34%), Gaps = 26/263 (9%) Query: 85 GSLAVNSRISFESYFDQ---IIRKSGDFDYRKITTKHIR------SGVESRKHTPSSAIQ 135 ++ ++ +++ + I++ +G ++++T +R S + K S Sbjct: 16 RQVSPHTLSNYQRQLARVTAILQGAGITQWQQVTASVVRYVVAQSSKQDGLKEK--SLAL 73 Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS---FWSEGSQP 192 L+++R + V+Q + +NP + PK+ + + +Q + + Sbjct: 74 RLSALRRFLTYLVQQGELKVNPATGISAPKQAKHLPKNIDTDQVQLLLANDSKEPIDIRD 133 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------ELPDGFMK 243 R E L SGLR S+ + + ++ G V + Sbjct: 134 RAIIELLYSSGLRLSELQGLNLNSIHLRSREVRVIGKGNKERVVPFGRYASHAIQQWLKV 193 Query: 244 LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAG 301 L P F++ +M+ + + + G+N + H +R AT +A Sbjct: 194 RLLFNP-KDNALFVSQLGNRMSHRAIQMRLETWGIRQGLNSHLNPHKLRHSFATHMLEAS 252 Query: 302 ATAHELMATYGWKTVDQAETYTK 324 + + G + + YT Sbjct: 253 SDLRAVQELLGHSNLSTTQIYTH 275 >gi|256820383|ref|YP_003141662.1| integrase family protein [Capnocytophaga ochracea DSM 7271] gi|256581966|gb|ACU93101.1| integrase family protein [Capnocytophaga ochracea DSM 7271] Length = 307 Score = 104 bits (259), Expect = 3e-20, Method: Composition-based stats. Identities = 39/253 (15%), Positives = 94/253 (37%), Gaps = 22/253 (8%) Query: 93 ISFESYFDQIIRKSG-DFDYRKITTKHIRSGVESRKH---TPSSAIQFLTSMRVLFKWAV 148 SFE + + + G D + + I+ + + S + L++++ + + Sbjct: 29 RSFEKFIKNLYEEKGEDCCLEQADQEDIKKWIIHLSDETISFRSINRKLSALKTYYNFLK 88 Query: 149 RQEYVAINPC-LSVERPKRKTEGIRPWTKEDMQQFKSFWS-----EGSQPRLAFEFLLYS 202 + + + I+P + K + + P+++ ++++ SF+S + + R E L + Sbjct: 89 KTKQIEISPFEKGIFLLKTEKKHKLPFSEAEIEKVLSFFSSKDSFDEVRNRAVIETLYAT 148 Query: 203 GLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPI---------GK 252 G+R S+ V + IK K + + L + + Sbjct: 149 GIRRSELSGLKVSDVDFEQKQIKVLGKGDKERYIPIIPELENTLKEYLVLREEVKNEKSQ 208 Query: 253 ETFFINNDKQKMNATQFSIWFKAK--ATKAGVNKSAHGVRKFSATISADAGATAHELMAT 310 + F+ + +K+ +T + + S H +R A+ D GA + + Sbjct: 209 DYLFLVKNGKKIYSTLVYRIINSYFSVVTTKKDVSPHVLRHSFASHLLDNGADLYTVKEL 268 Query: 311 YGWKTVDQAETYT 323 G ++ + YT Sbjct: 269 LGHSSLASTQVYT 281 >gi|148544102|ref|YP_001271472.1| phage integrase family protein [Lactobacillus reuteri DSM 20016] gi|184153472|ref|YP_001841813.1| integrase [Lactobacillus reuteri JCM 1112] gi|227364526|ref|ZP_03848588.1| phage integrase/recombinase [Lactobacillus reuteri MM2-3] gi|325682358|ref|ZP_08161875.1| phage integrase family integrase/recombinase [Lactobacillus reuteri MM4-1A] gi|148531136|gb|ABQ83135.1| phage integrase family protein [Lactobacillus reuteri DSM 20016] gi|183224816|dbj|BAG25333.1| integrase [Lactobacillus reuteri JCM 1112] gi|227070435|gb|EEI08796.1| phage integrase/recombinase [Lactobacillus reuteri MM2-3] gi|324978197|gb|EGC15147.1| phage integrase family integrase/recombinase [Lactobacillus reuteri MM4-1A] Length = 324 Score = 104 bits (259), Expect = 3e-20, Method: Composition-based stats. Identities = 39/264 (14%), Positives = 94/264 (35%), Gaps = 14/264 (5%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH--- 128 + L+++Y S + S +++ + + G + ++I T +R+ + + + Sbjct: 47 QQLLTKYFASKRAEGCSEKSLKYYKTTITKALASIG-KNAKEIVTDELRNYLTNYQEVHN 105 Query: 129 -TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + + + F W ++Y+ +P + + K T +T E++++ + Sbjct: 106 SSKVTIDNIRRILSSFFNWLEDEDYIIKSPVRRIHKVKVSTTVKETYTDEELEKLRDNCK 165 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG-----FM 242 + + +FL +G+R + + G+ + D Sbjct: 166 D-IRDLAMIDFLASTGMRVGELVLLNRDDINFQERECIVFGKGSKERIAYFDARAKLHLQ 224 Query: 243 KLLAMTPIGKETFFINNDKQK--MNATQFSIWFKAKATKAGVNKS-AHGVRKFSATISAD 299 K L E F++ ++ + K + G+++ H R+ AT + D Sbjct: 225 KYLYTRTDSNEALFVSLYRKHTRLTIGGVESRLKHLGKRLGISRVYPHKFRRTLATTAID 284 Query: 300 AGATAHELMATYGWKTVDQAETYT 323 G +L G K +D Y Sbjct: 285 KGMPIEQLQRLLGHKRIDTTLHYA 308 >gi|186687194|ref|YP_001870337.1| phage integrase family protein [Nostoc punctiforme PCC 73102] gi|186469497|gb|ACC85296.1| phage integrase family protein [Nostoc punctiforme PCC 73102] Length = 337 Score = 104 bits (259), Expect = 3e-20, Method: Composition-based stats. Identities = 55/309 (17%), Positives = 108/309 (34%), Gaps = 35/309 (11%) Query: 51 LTGSTPKREYINSPRKKPTTLKWL-ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF 109 L T + + PT ++W+ + E+ +S +LA NSR +E + + + Sbjct: 17 LNAETALLTGRTASTRPPTDIRWVKVLEFLRS---NNLAPNSRKLYERELKRFLA-WSEL 72 Query: 110 DYRKITTKHI-------RSGVESRKHTP---SSAIQFLTSMRVLFKWA--VRQEYVAINP 157 Y ++ +H+ R + + P SS + +++ FKW E +A NP Sbjct: 73 HYHELRPRHLALYKEYLRDEIRTDAGNPLSKSSINAGIAALKSFFKWMSYTYPEIIATNP 132 Query: 158 CLSVERPKRKTEGIRPWTKEDMQQFKSFWSE--GSQPR-LAFEFLLYSGLRCSDSCRAGV 214 L ++ K + T E+M++ S ++ R A +L GLR + + V Sbjct: 133 TLGIKLEKVPLPPAQSLTPEEMERVWSALELLQETKQRDTALVHILSHGLRAGEVVQLNV 192 Query: 215 QHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM----------TPIGKETFFINND---- 260 + + KT V L ++LA I++ Sbjct: 193 GSFDGKLLFLPDTKTNEPRLVPLRKESREVLAEYLQLRSQQGEVLNSDSPLMISHHASYK 252 Query: 261 KQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319 ++++ + A + + H R AT G G ++ Sbjct: 253 GERLSYHGIYFAVENIGELAQIEDLHPHSFRHTYATDLLLLGVDPSHARKLTGHQSEKAF 312 Query: 320 ETYTKGADR 328 YT +++ Sbjct: 313 RRYTLRSEQ 321 >gi|229587180|ref|YP_002845681.1| site-specific tyrosine recombinase XerC [Rickettsia africae ESF-5] gi|259710437|sp|C3PLU8|XERC_RICAE RecName: Full=Tyrosine recombinase xerC gi|228022230|gb|ACP53938.1| Tyrosine recombinase XerC [Rickettsia africae ESF-5] Length = 305 Score = 104 bits (259), Expect = 3e-20, Method: Composition-based stats. Identities = 48/284 (16%), Positives = 107/284 (37%), Gaps = 28/284 (9%) Query: 69 TTLKWLISEYRKSAHWG-SLAVNSRISFESYFDQIIR-----KSGDFDYRKITTKHIRSG 122 T+++ LI++++K + + ++ IS+ + + S I T IR Sbjct: 4 TSIQALINKWQKYLVLQRNYSNHTVISYNNDLKHFLEFMNYYNSELVTINHIKTADIRLI 63 Query: 123 VESRKH------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176 T SS + L++++ +++ + + + S++ PK+ + ++ Sbjct: 64 RSWLAKRNCDNFTASSISRGLSAVKNFYRFLEKTTQLNSHIIFSIKSPKKTKLLPKALSE 123 Query: 177 ED-------MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229 +D ++++ + + + + SGLR S++ HLQN F K Sbjct: 124 DDVVISLEHIEEYGNVKWIELRNKALLVLIYASGLRISEALSITKLHLQNLEFIRIIGKG 183 Query: 230 GTIITVELPD-------GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282 + ++++L E F +K+ F+ G+ Sbjct: 184 SKERIIPWLPIAKNLITQYLEILPYKLGDNEPIFRGKQGKKLQPPVFNRELIKLKHFYGL 243 Query: 283 --NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 + +AH R A+ + GA L G K++ ++YTK Sbjct: 244 PQHLTAHSFRHSFASHLLEHGADLRSLQELLGHKSLSTTQSYTK 287 >gi|150010322|ref|YP_001305065.1| site-specific recombinase [Parabacteroides distasonis ATCC 8503] gi|149938746|gb|ABR45443.1| site-specific recombinase [Parabacteroides distasonis ATCC 8503] Length = 383 Score = 104 bits (259), Expect = 3e-20, Method: Composition-based stats. Identities = 45/257 (17%), Positives = 89/257 (34%), Gaps = 24/257 (9%) Query: 94 SFESYFDQIIRKSGD-FDYRKITTKHIRSGVE-----SRKH-----TPSSAIQFLTSMRV 142 + +I+ GD +++ + ++ RK ++A F + Sbjct: 118 QIDKAIKHLIKYRGDTVTMKEVDKPYCLGFIDYLNNAKRKDGKLMAKVTTAGYF-RCLNC 176 Query: 143 LFKWAVRQEYVAINPCLSV---ERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFL 199 AV++E + NP + +R K T ++++ + + A+ F Sbjct: 177 ALNLAVKEEIIPYNPITKINPDDRIKIPESTREYLTVDEIKLLIASKCINEPTKQAYLFS 236 Query: 200 LYSGLRCSDSCRAGVQHLQNNIFSIKTQ----KTGTIITVELPDGFMKLLAMTPIGKETF 255 + GLR D + + + + KT + + L D +K + K+T Sbjct: 237 CFCGLRLGDIQALTWGDVILDGSQYRVKIVMKKTQKTLYLPLSDEALKWMPKRDDAKDT- 295 Query: 256 FINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGW 313 + AT ++ K A +G+ K+ H R AT+ GA + G Sbjct: 296 --DKIFHLPYATYINVVLKTWAQNSGITKTITFHTARHTFATMMLTLGADLYTTSKLLGH 353 Query: 314 KTVDQAETYTKGADRIR 330 V Y K D+ + Sbjct: 354 TQVKTTTIYAKIVDKKK 370 >gi|322509106|gb|ADX04560.1| xerC [Acinetobacter baumannii 1656-2] gi|323519136|gb|ADX93517.1| site-specific recombinase XerC [Acinetobacter baumannii TCDC-AB0715] Length = 295 Score = 104 bits (259), Expect = 3e-20, Method: Composition-based stats. Identities = 47/274 (17%), Positives = 95/274 (34%), Gaps = 27/274 (9%) Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGVESR----KHTPS 131 + K + + ++ ++E + + D R + +R + R + + S Sbjct: 2 WLKERKIQNQSEHTITAYERDVKSFLEFCELKKVDLRNVEASDLREYLAQRVEQDQLSSS 61 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG-- 189 S + LTS+R KWA + +Y+ INP + ++ E + Q Sbjct: 62 SMQRHLTSIRQFMKWAEQGKYLEINPTDDFKLKRQPRPLPGMIDIETVNQILDQPMPEKP 121 Query: 190 ------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-----ELP 238 + + E L SGLR ++ ++ + N ++ G + + Sbjct: 122 VDQQLWLRDKAMLELLYSSGLRLAELQGLTIKDIDFNRQLVRITGKGNKTRIVPFGKKAK 181 Query: 239 DGFMKLLAMTPIGKETF------FINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVR 290 + + L + I K F FI+ + Q K +A +AGV + H +R Sbjct: 182 ESLLNWLKIYNIWKGHFDQNASVFISQRGGALTPRQIEKRVKLQAQRAGVNVDLHPHLLR 241 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK 324 A+ + + G + + YT Sbjct: 242 HCFASHMLSSSGDLRSVQEMLGHSNLSTTQIYTH 275 >gi|260642076|ref|ZP_05414491.2| site-specific recombinase, phage integrase family [Bacteroides finegoldii DSM 17565] gi|260623620|gb|EEX46491.1| site-specific recombinase, phage integrase family [Bacteroides finegoldii DSM 17565] Length = 420 Score = 103 bits (258), Expect = 3e-20, Method: Composition-based stats. Identities = 47/293 (16%), Positives = 96/293 (32%), Gaps = 30/293 (10%) Query: 65 RKKPTTLKWLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRS 121 ++ TL + EY + + + + R + ++++ D + R Sbjct: 120 KRSCITLVDFLKEYEQEKFGFSASTLKGRRDLRGKIETYLKETNRPDIVLANVDVDFCRG 179 Query: 122 GVESRKHTPS------------SAIQFLTSMRVLFKWAVRQEYVAINPCLSV---ERPKR 166 ++ ++ + +A + AVR ++ NP S+ E+ + Sbjct: 180 FIDFLRYAKNGVRKDGSVISNGAAHHHQAVLNGALNKAVRDGILSANPLKSISSKEKYQP 239 Query: 167 KTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL----QNNIF 222 T E+M+ + + AF F ++GLR D + Sbjct: 240 SESMREYLTLEEMKVVMAASCPHEDVKRAFLFSCFTGLRLGDVRSLTWGKIVKAPDGKTL 299 Query: 223 SIKT--QKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA 280 ++T +KT I+ V L + L +E F+ + + A Sbjct: 300 FVRTKMEKTQKIVNVPLSKEAIDCLNPKENNEEPIFML----PAGTSNIERNIEKWMQDA 355 Query: 281 GVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 + K + H R AT+ GA + G V+ Y K D+ ++ Sbjct: 356 KITKHITYHCSRHTYATMLLTLGADIYTTSKLLGHSNVNTTSIYAKIVDKKKV 408 >gi|325570911|ref|ZP_08146560.1| site-specific tyrosine recombinase XerC [Enterococcus casseliflavus ATCC 12755] gi|325156315|gb|EGC68498.1| site-specific tyrosine recombinase XerC [Enterococcus casseliflavus ATCC 12755] Length = 312 Score = 103 bits (258), Expect = 3e-20, Method: Composition-based stats. Identities = 45/281 (16%), Positives = 103/281 (36%), Gaps = 36/281 (12%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFE---SYFDQIIRKSGDFDYRKITTKHIR---SGVE 124 ++LI E + ++ +++ F +++SG+ D + + +R S + Sbjct: 24 FRYLIVE-------RGYSEKTKKAYQEDMGDFFHFLKESGNEDPLAVEYRDVRVYLSYLT 76 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 R+++ +S + + S+R +++ + E V NP + K+ + R + +++M Sbjct: 77 EREYSRNSISRKMASLRSFYQFLTKHEIVKENPFAYIHLKKKNAKLPRFFYEKEMDALFQ 136 Query: 185 F----WSEGSQPRLAFEFLLYSGLRCSDS--CRAGVQHLQNNIFSIKTQKTGTI------ 232 + + E L SGLR S+ G ++ + I + Sbjct: 137 SVAGDEPLQQRNQALLEVLYGSGLRVSECSSLTLGAIDWESGVLLIHGKGNKDRYVPFGS 196 Query: 233 -----ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ----FSIWFKAKATKAGVN 283 + L G +L+ E F+N+ + AT + + + + ++ Sbjct: 197 YAQAAVKRYLSSGRKQLMEKQNKEHEILFVNHLGDGITATGIEYVLNQIIRKSSLDSKIH 256 Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R AT + GA + G + + Y Sbjct: 257 --PHMLRHTFATHLLNNGADMRTVQELLGHANLSTTQIYAH 295 >gi|78485001|ref|YP_390926.1| Phage integrase [Thiomicrospira crunogena XCL-2] gi|78363287|gb|ABB41252.1| Phage integrase [Thiomicrospira crunogena XCL-2] Length = 372 Score = 103 bits (258), Expect = 3e-20, Method: Composition-based stats. Identities = 50/371 (13%), Positives = 115/371 (30%), Gaps = 41/371 (11%) Query: 1 MTPSLR-----LPPFVTKERT-RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSA---L 51 M+P R LPP + ++ R+GK+ Y ++ + ++ + ++ + Sbjct: 1 MSPKAREISLGLPPNLYAKKDKRNGKVYYQYKSPLDGKFYSFGTDKNQAVNDAVALNHNI 60 Query: 52 TGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDY 111 + K + + Y S + L N+ + +S ++ G+ Sbjct: 61 YDAIQKSRVEKLKKPACILFRDFWQIYFDSMNDRKLKPNTIKTRKSQYEACYPFIGNTPL 120 Query: 112 RKITTKHIRSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169 ++ K + + + +A ++++ FK A+ Q V NP P + Sbjct: 121 NEVRVKDVADIINHYIEQDKRRTASAIRSTLKDAFKEAIHQGIVEDNPAEKTRAPSVPVK 180 Query: 170 GIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229 R + + + + E + A L +G R SD + + + +K Sbjct: 181 RQR-FNLDQVLKVLEINKE-TWLENAILLALITGQRVSDIAKMKFKDFDGEYLYVIQKKN 238 Query: 230 GT----------------IITVELPDGFMKLLAMTPIGKETFFINNDK---------QKM 264 +++ L D K N+ ++ Sbjct: 239 RQGAPEKRYKYHKDIKLDALSMTLGDIINKCRDNVISKHLVHHTKNEGLAKKGTSCHEQT 298 Query: 265 NATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 + +F+ + + + H +R + A E G K+ E YT Sbjct: 299 ISKRFTWLVREVVDGQNLP-TFHELR-SLSARLYKAQGNISE-QKVLGHKSAKSTEIYTD 355 Query: 325 GADRIRLGIKN 335 + ++ Sbjct: 356 ARGSEWVAVEM 366 >gi|328554916|gb|AEB25408.1| integrase [Bacillus amyloliquefaciens TA208] Length = 343 Score = 103 bits (258), Expect = 3e-20, Method: Composition-based stats. Identities = 50/278 (17%), Positives = 94/278 (33%), Gaps = 41/278 (14%) Query: 86 SLAVNSRISFE---SYF-DQIIRKSGDFDYRKITTKHIRSGVESRK-HTPS--------- 131 L + ++ YF + + +ITT+ +R+ + K P Sbjct: 40 GLRERTLTDYKKMWRYFTEWLNDNYEVTYIDEITTEILRNYINYMKYDKPRYHGHKYIKS 99 Query: 132 ----------SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 + L +++ LF + R+E + +NP V+ ++ + +T ++++ Sbjct: 100 DDNKVGLSDTTININLRTIKALFNYLDREELIEVNPATRVKLLRQDIDLTNCFTDDEIKA 159 Query: 182 FKS----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIK--TQKTGTII 233 G + A LL SGLR + + + + +I K Sbjct: 160 ILRQPNLRDYVGFRDYCAMNCLLDSGLRIEELLSLREKDIDFSSRFITINADVSKNRKHR 219 Query: 234 TVELPDGFMKLLAMTPIGK------ETFFINNDKQKMNATQFSIWFKAKATKAGV---NK 284 V + +KLL + F+++ + + A F+ K A KAGV Sbjct: 220 LVPISAHCVKLLLQLITENKSHFTTDRIFLSSYGEPLGANHFNKRLKYYAEKAGVKDKKV 279 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 +AH R A G L GW + Y Sbjct: 280 TAHVYRHTWAKTMILNGCDPFTLQKIGGWSDIRTMRRY 317 >gi|167553414|ref|ZP_02347163.1| integrase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205322115|gb|EDZ09954.1| integrase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] Length = 359 Score = 103 bits (258), Expect = 3e-20, Method: Composition-based stats. Identities = 49/283 (17%), Positives = 91/283 (32%), Gaps = 26/283 (9%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--K 127 T+ I Y SL+VN+ + + K G+ ++TT+HI +ES + Sbjct: 75 TVSAWIDRYEVLLQRRSLSVNTYKIRSNQLATVREKMGEIILAEVTTRHIAKFLESWITE 134 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINP--CLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + A + + +F+ A+ + ++ NP + K E ++ T + Sbjct: 135 GKKTMAGAMRSVLSDMFREAIVEGHIVKNPVEATRIPEIKVARERLQLETYNATRTAAEH 194 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK-- 243 LA + L +G R D + +N + KTG I + L Sbjct: 195 LPVWFP--LAMDLALVTGQRREDIVNMKFSDVFDNRLYVTQIKTGMKIAIPLSLTLQAPG 252 Query: 244 ------LLAMTPIGKETFFI------NNDKQKMNATQFSIWFKAKATKAGVNKS-----A 286 + + + F I N+ ++ + F +GVN S Sbjct: 253 LRPGTVIDRCRLVSRTDFMISAGIRENSPTGNIHPDGLTKTFVKARKASGVNFSNNPPTF 312 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 H +R A G + + + Y D Sbjct: 313 HEIR-SLAGRLYKNELGEEFAQKLLGHTSENTKKLYLDERDNK 354 >gi|169346819|ref|ZP_02865770.1| prophage lambdaba04, site-specific recombinase, phage integrase family [Clostridium perfringens C str. JGS1495] gi|169297101|gb|EDS79223.1| prophage lambdaba04, site-specific recombinase, phage integrase family [Clostridium perfringens C str. JGS1495] Length = 379 Score = 103 bits (258), Expect = 3e-20, Method: Composition-based stats. Identities = 55/358 (15%), Positives = 116/358 (32%), Gaps = 45/358 (12%) Query: 17 RHGKIIYY-FRKG--HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73 + G YY F G G+R R T A + + T Sbjct: 7 KRGNTWYYSFDLGKVDGKRKRKEKGGFKTKTEAQKALREAINDYENCGTIVNETNITFSD 66 Query: 74 LISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESR---KHT 129 + + K + N++ + + + G + + ++ ++ + + + Sbjct: 67 YLDYWFKEYVTINCKFNTQKYYLGIIQNHLKPILGSYKLKSLSPNVLQEFLNKKYISGLS 126 Query: 130 PSSAIQFLTSMRVLFKWAV-RQEYVAINPCLSVERPKRKT-----EGIRPWTKEDMQQFK 183 SS F + K AV +++ NP V+ PK E I+ T ++ + Sbjct: 127 KSSLSNFYGVLSGSLKMAVYPYKFIKENPMQYVKIPKNSNTKVTQEKIKVLTLDEFKIIL 186 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ----------------NNIFSIKTQ 227 + + GS + + +GLR + C ++ N IF + T Sbjct: 187 NRFPFGSNFYIPLQIAFNTGLRGGEVCALTWDNIDFDNKTLTVEHTLIEKGNGIFELGTP 246 Query: 228 KTGTI-ITVELPDGFMKLLAMTPI--------------GKETFFINNDKQKMNATQFSIW 272 KT + T+ L D + +L + Q + + Sbjct: 247 KTKSSFRTIALGDTLINILKKHRTFQKENKLKYGEYYSNSNYICTKENGQLITTSSLKYL 306 Query: 273 FKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRI 329 + + ++ + H +R AT+ + GA ++ G + +TY+ ++I Sbjct: 307 SRVVNYELLIDFNFHALRHTHATMLLEGGANFKDIQKRLGHSKLSTTMDTYSHVTNKI 364 >gi|310639697|ref|YP_003944455.1| integrase family protein [Paenibacillus polymyxa SC2] gi|309244647|gb|ADO54214.1| Integrase family protein [Paenibacillus polymyxa SC2] Length = 374 Score = 103 bits (258), Expect = 3e-20, Method: Composition-based stats. Identities = 43/277 (15%), Positives = 99/277 (35%), Gaps = 38/277 (13%) Query: 89 VNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSG----VESRKHTPSSAIQFLTSMRVL 143 + +++ I G + +K+ + HI+ ++ + +P++ + + +R Sbjct: 81 ETTTYGYKNILYKHISHFFGGIELQKLQSGHIQQYYKHLMDEKNLSPNTVHKHHSLIRKA 140 Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSG 203 + ++Q+ V N +VE PKRK + +TKE + + ++ + +Y G Sbjct: 141 LDYGLKQQLVYRNVADAVELPKRKRYEGKSYTKEQLIELLKKVK-NTKLEIPIYLAVYLG 199 Query: 204 LRCSDSCRAGVQHLQ---------------NNIFSIKTQKT-GTIITVELPDGFMKLLAM 247 LR + +++ K KT + ++ + D LL M Sbjct: 200 LRREEIIGLKWKYVDFESRTLHIFEVRTSAGKAIITKAPKTEKSRRSLHINDDLYSLLKM 259 Query: 248 TPIGKE--------------TFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKF 292 + +E + +++ + + FK K + K H +R Sbjct: 260 HKVKQEELKNMLGSAYDNAGYVYSHDNGKPYRVNSVTEQFKTFLEKQQLPKIRLHDLRHS 319 Query: 293 SATISADAGATAHELMATYGWKTVDQA-ETYTKGADR 328 A++ + G + G + + YT D+ Sbjct: 320 FASVLYNQGTDLKAISEALGHSDIGTTNKIYTHRFDK 356 >gi|302343156|ref|YP_003807685.1| integrase family protein [Desulfarculus baarsii DSM 2075] gi|301639769|gb|ADK85091.1| integrase family protein [Desulfarculus baarsii DSM 2075] Length = 409 Score = 103 bits (258), Expect = 3e-20, Method: Composition-based stats. Identities = 53/356 (14%), Positives = 113/356 (31%), Gaps = 49/356 (13%) Query: 11 VTKERTRHGKIIYYF---------RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYI 61 V +E+ + + F RK +R+ L + I A + E + Sbjct: 4 VVREKDSGSGVWWVFVNEDGHRTSRKVGSKRLALEV---AEKIKAKLVLRKCGLVAPEKV 60 Query: 62 NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121 P + WL + K + R + Y + K G +I+ +R Sbjct: 61 KLPLFRDYAQIWL-EGFIKHTRRPATYERYRDVLKKY---VTPKLGSLPLDQISRGQVRD 116 Query: 122 ---GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER----PKRKTEGIRPW 174 G+ S+ + +S ++ + +AV +E + NP + + + + + P Sbjct: 117 LLLGIYSKGLSKASVCIVRDTISGVMGFAVDEELIPSNPVIGITKRLNLGRDDGNTVEPM 176 Query: 175 TKEDMQQFKSFWSEGSQPRLAFEFLLY-SGLRCSDSCRAGVQHLQ--NNIFSIKTQ---- 227 T E++ F ++ R F + +G+R + + ++ Sbjct: 177 THEEVALFLETCAKHYPERYPFFLTAFRTGMRLGELLALQWGDIDWHGRFIVVRRSFKGG 236 Query: 228 -----KTGTIITVELPDGFMKLLAMTPIGKE------------TFFINNDKQKMNATQFS 270 KTG V++ + + L ++ + + Sbjct: 237 YTTSTKTGKARRVDMSNQLFETLCALQTKRKREAVGAGRGELAPLIFHKGGLPIAQNSAR 296 Query: 271 IWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQ-AETYTK 324 FK KAG+ H +R A++ AG + + G ++ + Y Sbjct: 297 NHFKRILQKAGLREMRVHDIRHTFASLLLSAGQSPVYVKEQLGHSSISMTVDIYGH 352 >gi|302341552|ref|YP_003806081.1| integrase family protein [Desulfarculus baarsii DSM 2075] gi|301638165|gb|ADK83487.1| integrase family protein [Desulfarculus baarsii DSM 2075] Length = 401 Score = 103 bits (258), Expect = 3e-20, Method: Composition-based stats. Identities = 55/334 (16%), Positives = 109/334 (32%), Gaps = 22/334 (6%) Query: 10 FVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69 FV + R++ G+ R G+ ++ T S + R P Sbjct: 41 FVAQYRSQTGRTR---RMALGQVGKITLDEARTLAQRVFSDVAKGLDPSANRKQGRTAP- 96 Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVES-RK 127 T+ L + Y S++ ++ II + G ++ + + + Sbjct: 97 TVAELCARYLAEHAQAKKKPASQVRDRRLIERFIIPQLGGEKVNTLSRADVAKLHNAIGR 156 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAI---NPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 TP A + L + + A+R NP +ER + R + +++ Q Sbjct: 157 ETPIQANRTLAVVSKMMTLAIRWGLRDEAKGNPAQFIERFREAKRE-RYLSADELAQLGQ 215 Query: 185 FWSE------GSQPRL-AFEFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTIITV 235 + G +P + A FLL +G R ++ + + + KTG + Sbjct: 216 ALAAAENEGWGFRPAIDAIRFLLLTGARVGEALSLRWEWIDRERACIFLPDSKTGRKA-L 274 Query: 236 ELPDGFMKLLA--MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFS 293 + + +L G F + + W K +A H +R Sbjct: 275 PIGGAVLAMLDGLAKQAGNPHVFPGQSLGRPLVDINTTWRKVRARAGLEGVRLHDLRHSY 334 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 A++ A +G + + A G Y+ A+ Sbjct: 335 ASVGAASGLSLTLIGAILGHSEPSTTARYSHLAN 368 >gi|307578043|gb|ADN53661.1| integrase [Staphylococcus aureus] Length = 390 Score = 103 bits (258), Expect = 3e-20, Method: Composition-based stats. Identities = 63/377 (16%), Positives = 125/377 (33%), Gaps = 57/377 (15%) Query: 23 YYFRKGHGRRIR---LPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT--LKWLISE 77 + +R G+ ++ Y S F + +R+ P+T K + + Sbjct: 11 WRYRISLGKDVKTGKYKYISNSGFKRKSDAKHHAEMIERQLRTGDYIAPSTSTFKQVADD 70 Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA--IQ 135 + K + V+S + E I + + + I + V S Sbjct: 71 WLKQYA-NDVKVSSVRAREKAIHHAIERFNNKPIQTIKKHDYQRFVNDISAQYSKNYVDS 129 Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRK--------TEGIRP-WTKEDMQQFKSFW 186 + S ++FK+A + + I P ++RPK+K TE + K+++ QF Sbjct: 130 IIASTNMIFKYAYDMKLIRILPSEGIKRPKKKVSVEELEDTEIHKKFLEKDELFQFLEVA 189 Query: 187 SEGSQPRLAFEF---LLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQ-------------- 227 P+ +FE L Y+G+R + + NN +I Sbjct: 190 KNHHSPQNSFEVFCXLAYTGMRAGELLALKWSDIDFENNTINITKTYYNPNNNKKQYQIL 249 Query: 228 --KTGTII-TVELPDGFMKLLAMTPIG------------KETFFINNDKQKMNATQFSIW 272 KT + I + + +KLL F + + + + +W Sbjct: 250 TPKTESSIGKIPVDPHVIKLLKNYKTDVQDTWKNELYVDNNFVFTDVNGYPLVIKKLQLW 309 Query: 273 FKAKATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADR 328 KA + S H R + +AG E+ K ++ Y K + Sbjct: 310 IKAILKNTDITNKQISTHSFRHTHCALLIEAGVHIKEIQERLRHKDINTTMNIYAKITNS 369 Query: 329 IRLGIKNSRRISSVVDS 345 + S++ S ++++ Sbjct: 370 YKK--DASQKFSKLMEN 384 >gi|319404836|emb|CBI78437.1| integrase/recombinase XerC [Bartonella rochalimae ATCC BAA-1498] Length = 321 Score = 103 bits (258), Expect = 3e-20, Method: Composition-based stats. Identities = 38/262 (14%), Positives = 80/262 (30%), Gaps = 25/262 (9%) Query: 88 AVNSRISFESYFDQIIRKSGDFD----YRKITTKHIRSGVESRK---HTPSSAIQFLTSM 140 AV + + + G + +R+ + R+ + S + + S+ Sbjct: 43 AVAYERDTRQFLFFLCQHLGYQPTLDDLADLRVADLRAYLAYRRTQNISARSLSRNMASL 102 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE-------DMQQFKSFWSEGSQPR 193 R F + R++ V + V PK +P T E + Q ++ ++ Sbjct: 103 RSFFNYLSREKLVNVPAAKLVRTPKHPKSLPKPLTIESALRIVKEENQQETEPWIIARNT 162 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI--KTQKTGTIITVELPDGFMKL----LAM 247 L G+R S++ + + K G + L K L Sbjct: 163 AILILLYGCGMRISEALALTPEQFADPSIKSLSVNGKGGKTRLIPLIPIVHKAIENYLKC 222 Query: 248 TP---IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGA 302 P + + F+ + + + + G+ ++ H +R AT G Sbjct: 223 CPYPLVNTQPIFLGVRGKPLQPAIIQRTVQNLRARLGLPETTTPHALRHSFATHLLSRGG 282 Query: 303 TAHELMATYGWKTVDQAETYTK 324 + G + + YT Sbjct: 283 DLRTIQELLGHACLSTTQIYTH 304 >gi|282851276|ref|ZP_06260641.1| site-specific recombinase, phage integrase family [Lactobacillus gasseri 224-1] gi|282557244|gb|EFB62841.1| site-specific recombinase, phage integrase family [Lactobacillus gasseri 224-1] Length = 374 Score = 103 bits (258), Expect = 3e-20, Method: Composition-based stats. Identities = 58/359 (16%), Positives = 126/359 (35%), Gaps = 38/359 (10%) Query: 6 RLPPFVTKERTRHGKIIYYFRK-----GHGRRIRLPYPHESTFIPAYMSALTGSTPKREY 60 +L +TK + GK+ Y F+ G+R+ + T+ A +A+ + Sbjct: 4 QLNKEITKYTLKSGKVRYRFKTYLGMDDSGKRVMVTRQGFKTYQEA--NAVYKKLRAKGT 61 Query: 61 INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120 + K T++ + + + + + + ++Y + + + G+ KI ++ Sbjct: 62 QGYTKPKQATVEQVWTLWFDTYKKHAKESTAHKMQQTYDNHVKKDFGNVYIDKIKPAKVQ 121 Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP-------KRKTEGIRP 173 + + + L +A+ Y INP V P +R T+ Sbjct: 122 KWINNLSTVLVRYRPAFNLLNNLINYAIVLGYANINPTKKVIVPAKTSVKKRRDTKNNYY 181 Query: 174 WTKEDMQQFKSFWSEGSQ-PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232 + E +++F + + S+ + F+ L +GLR S++ + I KT + Sbjct: 182 DSPEQVREFLNAAKKDSEIAYMYFKLLSSTGLRKSEALALKWDDIDFEKNVIHVTKTINV 241 Query: 233 ----ITVELPDGFMKLLAMTPIGKET--------------FFINNDKQKMNATQFSIW-F 273 + + P + P+ K F + +N + W Sbjct: 242 GFNNVELIAPPKTKESYRDVPLSKSLKADLMKYRSNIYDFVFCKANGDHLNLATPAHWLQ 301 Query: 274 KAKATKAGVNK-SAHGVRKFSATISAD--AGATAHELMATYGWKTVDQA-ETYTKGADR 328 + + + + + HG R AT+ G T ++ G T+D YT + + Sbjct: 302 RIYKNNSNLKQITIHGFRHTFATLMLQPGTGNTPKDVQKILGHSTIDMTLNIYTHESKK 360 >gi|294012386|ref|YP_003545846.1| integrase/recombinase XerD [Sphingobium japonicum UT26S] gi|292675716|dbj|BAI97234.1| integrase/recombinase XerD [Sphingobium japonicum UT26S] Length = 305 Score = 103 bits (258), Expect = 3e-20, Method: Composition-based stats. Identities = 49/284 (17%), Positives = 96/284 (33%), Gaps = 19/284 (6%) Query: 72 KWLISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130 LI + + A + N+ +++ + G + + Sbjct: 5 AALIDRFLEMMAAERGASRNTLLAYRADLTGAGEIVGGLS-SATRDRLAELTTAWAELAA 63 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----- 185 SS + +++R + + + A NP ++ RP + + + +++ + Sbjct: 64 SSVARKSSALRAFYAFLEEEGLRADNPSSALPRPVTRRSLPKILSTQEVDSLFALIAGKL 123 Query: 186 ---WSEGSQPRLA--FEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIITVELPD 239 RL+ E L SGLR ++ + L ++ F I K V + D Sbjct: 124 AVEHPAPLDLRLSALIELLYGSGLRATELVSLPRRALASDRPFLILKGKGARERLVPISD 183 Query: 240 GFMKLLAMTP---IGKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKFS 293 +A + + K ++ + KA A AG+ S H +R Sbjct: 184 RARAAVAAWLHHVPADSLWLFPSGKSHVSRIRLYQMVKALAAAAGIAPERVSPHVLRHAF 243 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 AT + GA L + G + + YT R + + NSR Sbjct: 244 ATHLLEGGADLRALQSMLGHADIGTTQIYTHVDSRRLVELVNSR 287 >gi|119898154|ref|YP_933367.1| phage integrase family site specific recombinase [Azoarcus sp. BH72] gi|119670567|emb|CAL94480.1| site-specific recombinase, phage integrase family [Azoarcus sp. BH72] Length = 358 Score = 103 bits (258), Expect = 3e-20, Method: Composition-based stats. Identities = 56/339 (16%), Positives = 115/339 (33%), Gaps = 36/339 (10%) Query: 11 VTKERTRHGKIIYYFRKGHGRRIRLPY-PHESTFIPAYMSALTGSTPKREYINSPR---- 65 +TK + +HG +IRL P E+ A T + I + + Sbjct: 4 ITKRQGKHGTTY-------KVQIRLKGYPAETATFDRLSDARTWAAQTETAIKAGKHFGV 56 Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125 K TL L +Y ++ + ++ S + + + G ++ I + Sbjct: 57 AKRRTLHELAEKYEQAV---ADSLKSFEARRGHLAYWRQAFGSSALADVSPALIAEHRDR 113 Query: 126 RKHTP--------SSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTK 176 ++ +++ ++ LF +AV++ ++V NP V + +R + Sbjct: 114 LTKRTTERGTVSLATVNRYIATLSALFTFAVKELQWVEANPVERVRKFGESPGRVRYLSD 173 Query: 177 EDMQQFKSFWSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQ--KTG 230 ++ + E P L A L +G R ++ Q + ++ K G Sbjct: 174 QERAALLTACRESRNPYLYPAVVLALSTGARQAEITTLRWQQVDFARRTIVLREGETKNG 233 Query: 231 TIITVEL----PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKS 285 + L D L + I + F + + +AG+ + Sbjct: 234 AGRVLPLTGEALDLLRDLAKVRDIRDDRVFPVASTTRAF-NSIKGAWDGAVKRAGISDFR 292 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R +A+ AG + E+ G KT+ Y+ Sbjct: 293 WHDLRHTAASYLTMAGIGSMEVAKVLGHKTLQMTARYSH 331 >gi|157829099|ref|YP_001495341.1| site-specific tyrosine recombinase XerC [Rickettsia rickettsii str. 'Sheila Smith'] gi|165933823|ref|YP_001650612.1| site-specific tyrosine recombinase XerC [Rickettsia rickettsii str. Iowa] gi|166918901|sp|A8GTV8|XERC_RICRS RecName: Full=Tyrosine recombinase xerC gi|189030082|sp|B0BVE6|XERC_RICRO RecName: Full=Tyrosine recombinase xerC gi|157801580|gb|ABV76833.1| site-specific tyrosine recombinase XerC [Rickettsia rickettsii str. 'Sheila Smith'] gi|165908910|gb|ABY73206.1| integrase/recombinase (XerC/CodV family) [Rickettsia rickettsii str. Iowa] Length = 305 Score = 103 bits (258), Expect = 3e-20, Method: Composition-based stats. Identities = 48/284 (16%), Positives = 106/284 (37%), Gaps = 28/284 (9%) Query: 69 TTLKWLISEYRKSAHWG-SLAVNSRISFESYFDQIIR-----KSGDFDYRKITTKHIRSG 122 T+++ LI++++K + + ++ IS+ + + S I T IR Sbjct: 4 TSIQALINKWQKYLVLQRNYSNHTVISYNNDLKHFLEFMNYYNSELVTINHIKTADIRLI 63 Query: 123 VESRKHT------PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176 SS + L++++ +++ + + + S++ PK+ + ++ Sbjct: 64 RSWLAKRNCDNFAASSISRGLSAVKNFYRFLEKTTQLNSHIIFSIKSPKKTKLLPKALSE 123 Query: 177 ED-------MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229 +D ++++ + + + + SGLR S++ HLQN F K Sbjct: 124 DDVVISLEHIEEYGNIKWVELRNKALLVLIYASGLRISEALSITKLHLQNLEFIRIIGKG 183 Query: 230 GTIITVELPD-------GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282 + ++++L E F +K+ F+ G+ Sbjct: 184 SKERIIPWLPIAKNLITQYLEILPYKLGDNEPIFRGKQGKKLQPPVFNRELIKLKHFYGL 243 Query: 283 --NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 + +AH R A+ + GA L A G K++ + YTK Sbjct: 244 PQHLTAHSFRHSFASHLLEHGADLRSLQALLGHKSLSTTQNYTK 287 >gi|256825348|ref|YP_003149308.1| site-specific tyrosine recombinase XerD [Kytococcus sedentarius DSM 20547] gi|256688741|gb|ACV06543.1| tyrosine recombinase XerD subunit [Kytococcus sedentarius DSM 20547] Length = 316 Score = 103 bits (258), Expect = 3e-20, Method: Composition-based stats. Identities = 39/272 (14%), Positives = 88/272 (32%), Gaps = 32/272 (11%) Query: 85 GSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSGVESRKHT---PSSAIQFLT 138 L+ N+ ++ + +G + + +R + + S+ + + Sbjct: 20 RGLSANTTSAYRRDLVAWVAHLDAAGRTSWPSVQAADVRQHLADLTASGRARSTVTRMVV 79 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS------------FW 186 ++R +A+ + +V ++ V P + + +++ + Sbjct: 80 AVRRFHAFALAEGWVEVDVAADVAPPAAVQPLPKALSLDEVARLIESTGPVEGGADAVEL 139 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELP------- 238 + + R E L +G R S+ V + + ++ K V L Sbjct: 140 AVARRDRAVLELLYGTGARVSEVTSLDVDDVDLDGLVVRLVGKGSKERHVPLGGAAAAAV 199 Query: 239 -DGF---MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKF 292 D +LA G +N +++ A +AG+ + S H +R Sbjct: 200 GDWLATGRPVLAARGSGGAALLLNQRGRRLGRQSAWALVTAAGRRAGLGEHLSPHTLRHS 259 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTK 324 AT GA + G +V + YT+ Sbjct: 260 YATHLMAGGADVRVVQELLGHASVTTTQIYTR 291 >gi|294794983|ref|ZP_06760118.1| putative site-specific recombinase, phage integrase family [Veillonella sp. 3_1_44] gi|294454345|gb|EFG22719.1| putative site-specific recombinase, phage integrase family [Veillonella sp. 3_1_44] Length = 357 Score = 103 bits (258), Expect = 3e-20, Method: Composition-based stats. Identities = 49/308 (15%), Positives = 102/308 (33%), Gaps = 39/308 (12%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESR-K 127 +L I+ + + S+ + S+ ++ I K G +I +R ES Sbjct: 53 SLNTWINIWLQLKE-KSITPATYQSYTGIINRYIRDKIGGVKLAEIKPNTLRYVFESMDG 111 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI-RPWTKEDMQQFKSFW 186 + + +T + + + AV+ + + N +++RPK + ++++ F S Sbjct: 112 LSSRTISYTMTILSSILEQAVKDDIIPKNYMKNIDRPKHVKVRHMVTLSADEVKNFLSNI 171 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-----------------NNIFSIKTQKT 229 S S+ F+ +G+R S+ + + S T+ T Sbjct: 172 S-NSEHHALFKLAFATGMRRSELLGLRWSDIDFKKSTISISQTALKIGSTAVISNTTKTT 230 Query: 230 GTIITVEL-PDGFMKLLAMTPI------------GKETFFINNDKQKMNATQFSIWFKAK 276 + + + D +L+ F + S K Sbjct: 231 SSKRIIAIDTDTIQELMKHKTTIDKRRIKTMNWINNNLVFPGIKGAPRCPDEVSKLCKKY 290 Query: 277 ATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIK 334 A G + HG R AT+ + GA + G + + +TY+ ++ Sbjct: 291 ANLIGKPTFTMHGTRHTHATLLIENGANMKAIQERLGHASFQETMDTYSHVT--PKMEDD 348 Query: 335 NSRRISSV 342 RIS + Sbjct: 349 IVERISKI 356 >gi|255692176|ref|ZP_05415851.1| tyrosine type site-specific recombinase [Bacteroides finegoldii DSM 17565] gi|299146444|ref|ZP_07039512.1| putative tyrosine recombinase [Bacteroides sp. 3_1_23] gi|260622041|gb|EEX44912.1| tyrosine type site-specific recombinase [Bacteroides finegoldii DSM 17565] gi|298516935|gb|EFI40816.1| putative tyrosine recombinase [Bacteroides sp. 3_1_23] Length = 383 Score = 103 bits (258), Expect = 3e-20, Method: Composition-based stats. Identities = 37/260 (14%), Positives = 82/260 (31%), Gaps = 13/260 (5%) Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTPSSAI 134 Y + ++++ +++ YF + D +T + I S + KH ++ Sbjct: 111 YLELLEQKRYSLSTIKAYKIYFSDFMEYHKGHDLDLLTVEDINSYMLHMVKEKHISATQQ 170 Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194 + + VR+ + R K ++E+M+ + R Sbjct: 171 NMRINAIKFYYEKVRKGRRQY--YGGIARAKEYKALPEVLSREEMKSIFAQLPNRKH-RC 227 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-----ITVELPDGFMKLLAMTP 249 + +GLR S+ + + + I+ G ++ +L + Sbjct: 228 MISLIYSAGLRRSELLNLTPKDIISERMLIRIAGKGKKCRYSLLSEKLLNELRAYYREYR 287 Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHEL 307 K F ++ + + K A KAG+ H +R AT + G + Sbjct: 288 PQKWLFEGEQSGEQYSPSALVKVLKEAARKAGIKHRVHLHMLRHTFATHLLEQGTDLRTI 347 Query: 308 MATYGWKTVDQAETYTKGAD 327 G + Y ++ Sbjct: 348 QELMGHTDIKTTAIYLHVSN 367 >gi|302383500|ref|YP_003819323.1| integrase [Brevundimonas subvibrioides ATCC 15264] gi|302194128|gb|ADL01700.1| integrase family protein [Brevundimonas subvibrioides ATCC 15264] Length = 300 Score = 103 bits (258), Expect = 3e-20, Method: Composition-based stats. Identities = 42/277 (15%), Positives = 99/277 (35%), Gaps = 25/277 (9%) Query: 75 ISEYRKSAH-WGSLAVNSRISFESYF---DQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130 I Y + + ++ ++ + I G + + +G+ R + Sbjct: 6 IEAYLEMMAVERDASPHTLSAYARDLADAEASIDGGGLIAADEAAIEAWFAGLAPRGLSA 65 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-- 188 ++A + +++R +++A+ + + +P ++ PK+ R +E++ + + Sbjct: 66 ATAARRRSAIRQFYRFAMGEGWRTDDPSRRLDAPKQGRPLPRTLNREEVVGLLTASAARD 125 Query: 189 ---GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFMKL 244 G + E SGLR S+ V+ ++ + + I K G L + Sbjct: 126 GAAGLRMIALVELAYASGLRVSELLGLRVEAVRRDPAYLIVRGKGGKERLAPLNASAREA 185 Query: 245 LAMTPIGKE---------TFFINNDK---QKMNATQFSIWFKAKATKAGVN---KSAHGV 289 + I ++ + ++ + +F+ A AG++ S H + Sbjct: 186 VKAWLIARDARRPEKAPDSPWLFPSGAASGHLTPRRFAQMLDQAAVDAGIDPARVSPHVL 245 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 R AT + GA + G + + YT A Sbjct: 246 RHAFATHLLEGGADLRVVQTLLGHADIATTQIYTHVA 282 >gi|313896449|ref|ZP_07830000.1| site-specific recombinase, phage integrase family [Selenomonas sp. oral taxon 137 str. F0430] gi|312974873|gb|EFR40337.1| site-specific recombinase, phage integrase family [Selenomonas sp. oral taxon 137 str. F0430] Length = 331 Score = 103 bits (258), Expect = 3e-20, Method: Composition-based stats. Identities = 41/279 (14%), Positives = 94/279 (33%), Gaps = 15/279 (5%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH----T 129 L++ + + + + +++ +++ D +ITT +R + + + Sbjct: 56 LLTMFTAAKKVEGCSERTLNYYQTTLLKVLGSF-DKHITRITTDDLRKYLSEYQEEHRCS 114 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 S+ + F W + Y+ +P + + K +T E ++Q + + Sbjct: 115 KSNIDNIRRILSSFFAWLEEENYILKSPVRRIHKIKTAKVVKETYTDEALEQMRDNCT-N 173 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDG----FMKL 244 S+ + L +G+R + R + + I K V Sbjct: 174 SRDLAMIDLLASTGMRVGELVRLNRSDVDFESRECIVFGKGSKERPVYFDARTKIHLKNY 233 Query: 245 LAMTPIGKETFFINNDKQK--MNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAG 301 L F++ K ++ + I + K G+ K H R+ AT + D G Sbjct: 234 LDSRIDDNPALFVSLQKPHNRLHISGVEIRLRDMGKKLGIPKVHPHKFRRTLATRAIDKG 293 Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340 ++ G +D Y D+ + + + I+ Sbjct: 294 MPIEQVQQLLGHSKIDTTMEYA-MVDQNNVKNSHRKFIA 331 >gi|312126649|ref|YP_003991523.1| integrase family protein [Caldicellulosiruptor hydrothermalis 108] gi|311776668|gb|ADQ06154.1| integrase family protein [Caldicellulosiruptor hydrothermalis 108] Length = 283 Score = 103 bits (258), Expect = 3e-20, Method: Composition-based stats. Identities = 34/261 (13%), Positives = 86/261 (32%), Gaps = 34/261 (13%) Query: 89 VNSRISFESYFDQIIRKSGDFDYRKIT-------TKHIRSGVES-RKHTPSSAIQFLTSM 140 ++ ++ + ++ + R+ ++ RS + + +K + L+++ Sbjct: 15 ESTAKTYIRAVENFLKWYSESYDREFDGKVLPLHIRNYRSYLMTVKKLNAKTINNNLSAI 74 Query: 141 RVLFKWAVRQEYVAINPCL----------SVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 + + V + + NP L V K + + + + + Sbjct: 75 KSYCDFLVEKGVIETNPVLDDYFIDVQEPGVSPAKLENKDFNKLEEAVV------HYGSA 128 Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPI 250 + F L Y+G+R S+ C + + + I K G + L + + Sbjct: 129 RDIAIFYTLAYTGVRVSELCNIRLNDIVKDELIIYYGKGGKQRKIPLNRTVREAIDNWLK 188 Query: 251 GK--------ETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAG 301 + + FI+ + ++ + K A + H +R + + + G Sbjct: 189 ERGKYKYSHLDYLFISERGK-LDRSTVYRIIKEYCRIAKIEPIGPHQLRHYFCKRALEKG 247 Query: 302 ATAHELMATYGWKTVDQAETY 322 T E+ A G + + Y Sbjct: 248 FTITEVAALAGHSRITTTQVY 268 >gi|227893507|ref|ZP_04011312.1| integrase-recombinase [Lactobacillus ultunensis DSM 16047] gi|227864677|gb|EEJ72098.1| integrase-recombinase [Lactobacillus ultunensis DSM 16047] Length = 302 Score = 103 bits (258), Expect = 3e-20, Method: Composition-based stats. Identities = 33/219 (15%), Positives = 81/219 (36%), Gaps = 17/219 (7%) Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 + RK SS + ++S+ +++ R+ + I+P ++ + + + + + +++Q Sbjct: 64 LADRKLARSSQQRQMSSLHSFYRFLTRRRIIKIDPTQAITLRRGEKKLPEFFYQPEIKQV 123 Query: 183 KSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-ITVEL 237 + FE +G+R S+ ++ + ++ +I G V Sbjct: 124 FDSLQGNKPLTVRNLALFELFYATGMRVSEVSGLTLKQIDLSLQTILVHGKGNKDRYVAF 183 Query: 238 PDGFMKLL----------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS-- 285 D K L + ++ F++N + ++ + +AG++ Sbjct: 184 DDRTKKSLVNYLENARPKLLKDETEQHVFLSNLGKPISDRGIQYVMQKTFNQAGISGKVH 243 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R AT + GA + G + + YT Sbjct: 244 PHELRHTFATAMLNNGADLRSVQELLGHSDLSATQIYTH 282 >gi|298249905|ref|ZP_06973709.1| integrase family protein [Ktedonobacter racemifer DSM 44963] gi|297547909|gb|EFH81776.1| integrase family protein [Ktedonobacter racemifer DSM 44963] Length = 369 Score = 103 bits (258), Expect = 3e-20, Method: Composition-based stats. Identities = 45/312 (14%), Positives = 101/312 (32%), Gaps = 43/312 (13%) Query: 59 EYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFES-----YFDQIIRKSGDFDYRK 113 + + TL + + + H + + ++ + + + Sbjct: 21 QEAKEVSRATLTLDDALRIFLSAQHASGNSGATHKDYQIAVGNVFIRYMKETLNRVYLEE 80 Query: 114 ITTKHIRSGVESRKH---------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP 164 I I + + + S + + V FKW V +++ NP +++ Sbjct: 81 IEEVDIILWLSHLREATSKFGRPYSSRSIQTYYRDVVVFFKWLVAHKHLKENPAENLKPV 140 Query: 165 KRKTEGIRPWTKEDMQQFKSFWSEG---------------SQPRLAFEFLLYSGLRCSDS 209 K + IR +T++++ + + S+ R LL +G+R S++ Sbjct: 141 KTEKALIRVFTEDELVRLDAACDRAPKGKSLTPDERKALSSRDRAFLWLLLSTGIRVSEA 200 Query: 210 CRAGVQHL--QNNIFSIKTQKTGTIITVELPDGFMKLLAM--------TPIGKETFFINN 259 C + + ++ K + + L T E F+N Sbjct: 201 CGLLFGDIEWDMGMIYVR-GKGAKERKIPFGKIARQHLDTYIRYWRGGTTNHDEYVFLNA 259 Query: 260 DKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTV 316 + + F AG++ S H R + A + G + L G +T+ Sbjct: 260 WGAPLRRSAAECIFTRLKKIAGIDDKRVSPHTCRHWFAVNAIKNGVPSTVLQGWLGHETL 319 Query: 317 DQAETYTKGADR 328 + TY + A++ Sbjct: 320 EMINTYVRLAEQ 331 >gi|17233092|ref|NP_490182.1| integrase/recombinase [Nostoc sp. PCC 7120] gi|17135614|dbj|BAB78160.1| integrase/recombinase [Nostoc sp. PCC 7120] Length = 342 Score = 103 bits (258), Expect = 3e-20, Method: Composition-based stats. Identities = 52/306 (16%), Positives = 106/306 (34%), Gaps = 35/306 (11%) Query: 54 STPKREYINSPRKKPTTLKWL-ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYR 112 + K + ++ PT ++W+ + E+ +S +LA NSR +E + + Y Sbjct: 24 AIQKSKSRSAKIAAPTDIRWIKVLEFLRS---TNLAPNSRKLYERELKRFLG-WTQLHYH 79 Query: 113 KITTKHI-------RSGVESRKHTP---SSAIQFLTSMRVLFKWA--VRQEYVAINPCLS 160 ++ +H+ R V++ P +S + +++ F W E + NP L Sbjct: 80 ELRPRHLGLYKEYLRDEVKTDSGKPLSKASINAGVAALKSFFNWMCYTYPEIITTNPTLG 139 Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSE--GSQPR-LAFEFLLYSGLRCSDSCRAGVQHL 217 ++ K + T E M++ S ++ R A +L GLR + + V Sbjct: 140 IKLEKVPLPPAQSLTDEQMERVWSALELLGETKERDTALVHILSHGLRAGEIVQLNVGSF 199 Query: 218 QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKE----------TFFINND----KQK 263 + + KT V L +L ++ I++ + Sbjct: 200 DGKLLFLPDTKTNEPRLVPLRKESRDVLEAYLRSRQQQGEELNSLTPLMISHHASYKGDR 259 Query: 264 MNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 ++ + AG+ + H R AT G G ++ Y Sbjct: 260 LSYHGIYFAVEKIGEFAGIEDLHPHQFRHTYATELLLLGVDPSHARKLTGHQSEKAFRRY 319 Query: 323 TKGADR 328 T +++ Sbjct: 320 TLRSEQ 325 >gi|293374275|ref|ZP_06620603.1| site-specific recombinase, phage integrase family [Turicibacter sanguinis PC909] gi|292647108|gb|EFF65090.1| site-specific recombinase, phage integrase family [Turicibacter sanguinis PC909] Length = 374 Score = 103 bits (258), Expect = 3e-20, Method: Composition-based stats. Identities = 58/371 (15%), Positives = 119/371 (32%), Gaps = 46/371 (12%) Query: 13 KERTRHGKIIYYFRKG--HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70 R R K YYF G G+ + T A + + T Sbjct: 4 SVRKRGDKWSYYFTIGKVDGKYKKKEKSGFVTKKEAETALREALRQYETDGVVSKHSDYT 63 Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKHT 129 L+ I + + L + +++ I + G + +K T ++ + T Sbjct: 64 LQEYIQYWFDTIAINYLKFETMHNYKCVATKHIYPEIGHLNIKKATPTVLQKYFSEKLKT 123 Query: 130 PSSAIQFLTSMRVL----FKWAVRQEYVAINPCLSV--ERPKRKTEGIRPWTKEDMQQFK 183 +A ++ +R + FK AV+Q + NP + + K+K +R K D+ Sbjct: 124 -YNADSIVSIIRNILSNTFKLAVKQNILPRNPMAQIELKSQKQKETAMRVVNKNDIDNLL 182 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ----------------NNIFSIKTQ 227 + ++ + F +++G R + + N + + Sbjct: 183 LEIKD-TRYYIPFIIAIHTGARRGEILGLTWDDVNFENNTLTINKILQYQQGNGLVLSST 241 Query: 228 KTGTII-TVELPD----GFMKLLAMTPIGKETF-----------FINNDKQKMNATQFSI 271 KT + + TV + + + KE + N+D +N S Sbjct: 242 KTSSSVRTVLMTSTLVHELQEYRKSQLLRKEYYGNHYFSEQSFVCCNDDGSPINPLSLSQ 301 Query: 272 WFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIR 330 + K + K G H +R AT+ +A + G + + Y+ + + Sbjct: 302 FTKKISQKYGYRFRFHDLRHTHATMLLEADVNIKVIQQRLGHENIKTTLNVYSHLTN--K 359 Query: 331 LGIKNSRRISS 341 L + + Sbjct: 360 LDEDAINKFDN 370 >gi|265763064|ref|ZP_06091632.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_16] gi|263255672|gb|EEZ27018.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_16] Length = 380 Score = 103 bits (258), Expect = 3e-20, Method: Composition-based stats. Identities = 40/216 (18%), Positives = 79/216 (36%), Gaps = 14/216 (6%) Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE---RPKRKTEGIRPWTKEDMQQF 182 + + ++ + + AV E + NP ++ +PKR+ T ++++ Sbjct: 157 KNISANTQVHYYKVFHHCLNSAVIDEIITSNPMDKIKNEEKPKRRRTERAFLTIDELKIL 216 Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-----IFSIKTQKTGTIITVEL 237 + + AF F + GLR SD +L+ + QKT I+++ L Sbjct: 217 SQTDFHNATLKKAFLFSCFCGLRHSDIVALTWGNLKKGKVGKMELHMTQQKTQEILSLPL 276 Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI-WFKAKATKAGVNK--SAHGVRKFSA 294 + L P+ + + + + + A KAG+ K + H R A Sbjct: 277 S---KEALKQLPVRGKVPDTEKVFKGLISLGRTNEILPKWAAKAGIQKHITFHSARHTHA 333 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 T+ GA + + G + + Y K D + Sbjct: 334 TMMITLGADLYTVSKLLGHTNIQTTQIYAKIVDESK 369 >gi|293189843|ref|ZP_06608557.1| tyrosine recombinase XerC [Actinomyces odontolyticus F0309] gi|292821258|gb|EFF80203.1| tyrosine recombinase XerC [Actinomyces odontolyticus F0309] Length = 285 Score = 103 bits (258), Expect = 3e-20, Method: Composition-based stats. Identities = 49/295 (16%), Positives = 91/295 (30%), Gaps = 40/295 (13%) Query: 67 KPTTLKWLISEYRKSAHWGSL-AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125 P T+ + + + SL A + +T + +RS + Sbjct: 2 SPHTVSAYLGDLHSLMEFLSLDADATPEQLR---------------EALTQRAVRSWLAR 46 Query: 126 ---RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 S+ + ++R WA+R+ + +P + P+ P + D + Sbjct: 47 TLADGGARSTIARHTAAIRNFTSWAMREGILVSDPAALLSSPRADQLLPSPLDESDARVL 106 Query: 183 ------KSFWSEGSQPRLA--FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TII 233 ++ SQ R E GLR S+ C + L +++ G Sbjct: 107 LNTARDEAAAGGASQIRNWAILELTYACGLRVSEVCALDIPSLNREALTVRVVGKGNKER 166 Query: 234 TVELPDGFMKLLA----------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV- 282 V L F+ + +++ A +AGV Sbjct: 167 VVPYGPPAADALDHWLVRGRPQLAGERSGNALFLGDKGGRIDPRIVRSMVHKTAARAGVH 226 Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 + + HG+R +AT GA + G ++ + YT D RL R Sbjct: 227 DIAPHGLRHSTATHLLQGGADLRAVQEMLGHSSLSTTQRYTH-VDTARLSAIYQR 280 >gi|238018829|ref|ZP_04599255.1| hypothetical protein VEIDISOL_00689 [Veillonella dispar ATCC 17748] gi|237864595|gb|EEP65885.1| hypothetical protein VEIDISOL_00689 [Veillonella dispar ATCC 17748] Length = 357 Score = 103 bits (258), Expect = 3e-20, Method: Composition-based stats. Identities = 58/342 (16%), Positives = 121/342 (35%), Gaps = 53/342 (15%) Query: 18 HGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISE 77 +GK Y++ G ++ + AY+ +L I + R E Sbjct: 17 NGKRKYFY--GTTKKAAIAE------RDAYVESLAQCANYDNTITTER---------WCE 59 Query: 78 YRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH-TPSSAIQ 135 Y +++ N+ S++ I+ G +++ ++R+ ++S H + + Sbjct: 60 YWIRLKTDTVSQNTLSSYQYIIKTYIVPFIGSIRLVELSALNVRALMDSMSHLSARTISY 119 Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE-GIRPWTKEDMQQFKSFWSEGSQPRL 194 LT +R + K AV E ++ N V++PK++ + + +KE+++ F + + Sbjct: 120 TLTVLRAILKQAVMDEIISKNVATLVKKPKQERKREMVTLSKEEVETFLEQIDD-VEWHA 178 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNI-----------------FSIKTQKTGTIITVEL 237 F+ +GLR S+ + S T+ + + ++ L Sbjct: 179 LFKLAFTTGLRRSEILGLTWDDVNLKQKTLTVNQTVLRIDEVTTISKTTKNSSSRRSISL 238 Query: 238 PD----GFMKLLAMTP---------IGKETFFINNDKQKMNATQFSIWFKAKATKAG-VN 283 D +KL F + + S+ K AT G + Sbjct: 239 DDKTIAELLKLRTCVDKRRLKAPNWRNNNLVFPGKFGNPRDPAKVSLKCKKFATAIGRPD 298 Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKT-VDQAETYTK 324 + H R AT+ +AG + G + +TY+ Sbjct: 299 FTMHDTRHTHATLLLEAGVNFKVVQMRLGHSSYQQTMDTYSH 340 >gi|296117640|ref|ZP_06836224.1| tyrosine recombinase XerC [Corynebacterium ammoniagenes DSM 20306] gi|295969371|gb|EFG82612.1| tyrosine recombinase XerC [Corynebacterium ammoniagenes DSM 20306] Length = 281 Score = 103 bits (258), Expect = 3e-20, Method: Composition-based stats. Identities = 38/267 (14%), Positives = 91/267 (34%), Gaps = 24/267 (8%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE---SRKHTP 130 I ++ + + + + + S + + + D + H+RS + + Sbjct: 5 IYDFAEHQRYVLGRSEATIKGYTSDLLDLAQTTED--FASFNLAHLRSWLASAVAAGKAR 62 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ-QFKSFWSEG 189 S+ + + + WAV+Q Y+ + + PK + + +++ + S Sbjct: 63 STLARRTAAAKAFSTWAVKQGYLRTDEAAKLSTPKVPKQLPKVLNEQEAATAMGNAHSVD 122 Query: 190 ----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV--------EL 237 + E L +G+R S+ + + ++ +I+ G V + Sbjct: 123 ELHSLRDAAMLELLYATGMRVSELTGIDLSDIDSSRQTIRVLGKGNKQRVVPYGQAAQKA 182 Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATIS 297 D ++ A F+ +++ + AG S H +R +AT Sbjct: 183 LDLWLARRAEMAKDPSALFVGTRGGRID----QRQVRRVVEAAG-QVSPHALRHSAATHM 237 Query: 298 ADAGATAHELMATYGWKTVDQAETYTK 324 + GA + G ++ + YT Sbjct: 238 LEGGADLRVVQELLGHSSLQTTQVYTH 264 >gi|189352421|ref|YP_001948048.1| tyrosine recombinase [Burkholderia multivorans ATCC 17616] gi|327197999|ref|YP_004306367.1| gp1 [Burkholderia phage KS5] gi|189336443|dbj|BAG45512.1| tyrosine recombinase [Burkholderia multivorans ATCC 17616] gi|310657133|gb|ADP02248.1| gp1 [Burkholderia phage KS5] Length = 235 Score = 103 bits (258), Expect = 3e-20, Method: Composition-based stats. Identities = 40/229 (17%), Positives = 71/229 (31%), Gaps = 39/229 (17%) Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG-----SQPR 193 + ++F AVR+ NP V K + + R T +++ ++ G S R Sbjct: 1 MLSLIFMHAVRRGLCDGNPAREVGAAK-ERKRDRYITDDELDAVRAAIVAGADYKTSSAR 59 Query: 194 LAF---EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT----GTIITVELPDGFMKLLA 246 + + R D Q++ + S KT G + +E+ + L Sbjct: 60 SILCLVDLAYQTAQRIGDLLALNWQNVSDEGISFHPSKTVNSSGVRLLIEMTPDLRETLD 119 Query: 247 MTPIGKET----FFINNDKQKMNATQFSIWFKAKATKA-----------GV--------N 283 GK T + + +K +A G+ Sbjct: 120 RARGGKVTAIGPVICTHTGGRFTYIGAYSAWKRACERARSTYEKECAKKGIEPNPLYLTG 179 Query: 284 KSAHGVRKFSATIS-ADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 H +R + T GA A + + G T YTK + R+ Sbjct: 180 MHFHDLRAKALTDLKRQRGAAAAQ--SLAGHTTESMTAHYTKAREVERV 226 >gi|160934246|ref|ZP_02081633.1| hypothetical protein CLOLEP_03117 [Clostridium leptum DSM 753] gi|156866919|gb|EDO60291.1| hypothetical protein CLOLEP_03117 [Clostridium leptum DSM 753] Length = 314 Score = 103 bits (258), Expect = 3e-20, Method: Composition-based stats. Identities = 40/234 (17%), Positives = 86/234 (36%), Gaps = 16/234 (6%) Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEY-VAINPCLSVERPKRKTEGIRPWTKED-MQQF 182 R++ ++ + S+R F++ + + + NP +E PK+K + T E + Sbjct: 70 ERENKNAARARKSASLRAFFQYLTNKTHQLKENPVQELETPKQKKSLPKYLTLEQSIDLL 129 Query: 183 KSFW-SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241 + + L GLR ++ + ++ + T K + L Sbjct: 130 NAVDGPFRERDYCILTLFLNCGLRLAELVGLNLNDIRPDHTMRVTGKGNKERMIYLNSAC 189 Query: 242 MKLL---------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAHGV 289 K + M+ K+ FI++ +++ + K G++ SAH + Sbjct: 190 QKAIEEYLKVRPNPMSVSDKKALFISHLNKRLGRQAVQNIVQKYLKKIGLDGQGYSAHKL 249 Query: 290 RKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342 R +AT+ G L G + + E YT +++ ++ +S V Sbjct: 250 RHTAATLMYQHGNVDIRVLKDILGHQNLGTTEIYTHLSNQQMEDAADANPLSKV 303 >gi|163813874|ref|ZP_02205268.1| hypothetical protein COPEUT_00027 [Coprococcus eutactus ATCC 27759] gi|226322754|ref|ZP_03798272.1| hypothetical protein COPCOM_00526 [Coprococcus comes ATCC 27758] gi|158450744|gb|EDP27739.1| hypothetical protein COPEUT_00027 [Coprococcus eutactus ATCC 27759] gi|225208915|gb|EEG91269.1| hypothetical protein COPCOM_00526 [Coprococcus comes ATCC 27758] Length = 363 Score = 103 bits (258), Expect = 3e-20, Method: Composition-based stats. Identities = 54/317 (17%), Positives = 104/317 (32%), Gaps = 30/317 (9%) Query: 54 STPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYR 112 + + +++ R L I Y S L + + I+ G+ Sbjct: 40 EFERSKKLSNERSMDMKLSDFIEIYF-SDKQNDLKDRTIKNKRYMMQQHIVPYFGNQMMS 98 Query: 113 KITTKHIRSGVESRKHTPSSAIQFL---TSMRVLFKWAVRQEYVAINPCLSVER-PKRKT 168 +I I + S + LF A + + +NPC V+R + Sbjct: 99 EIKASQIIQWQNEIQKKGYSDSYLRMIQNQLTSLFTHAAKIYDLPVNPCKKVKRMGNSDS 158 Query: 169 EGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL----------- 217 + WT ++ +QF G++ L FE L ++G R + + Sbjct: 159 RSLNFWTLDEYKQFIQTMEPGTRYYLMFEMLFWTGCRIGELLAITKADINFEKNQLSINK 218 Query: 218 ---QNNIFSIKTQ-KTG-TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIW 272 + + I T+ KT + T+E+P+ + + G + Sbjct: 219 TYYRTGMQDIITEPKTKQSFRTIEIPEFLKEEIKEFVDGHYGMPDTERLFPVVQEAVQHK 278 Query: 273 FKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIR 330 K + AGV K H +R + G + G K + TY Sbjct: 279 MKRQIELAGVKKIRVHDIRHSHVAYLIEKGVEPLLIRDRLGHKDIRITLNTYGH------ 332 Query: 331 LGIKNSRRISSVVDSDD 347 L R+I++++D+++ Sbjct: 333 LYPNQQRKIANLLDNEN 349 >gi|324324345|gb|ADY19605.1| prophage LambdaBa04, site-specific recombinase, phage integrase family protein [Bacillus thuringiensis serovar finitimus YBT-020] Length = 374 Score = 103 bits (258), Expect = 3e-20, Method: Composition-based stats. Identities = 46/292 (15%), Positives = 95/292 (32%), Gaps = 37/292 (12%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH 128 TL + E+ ++ + + I++ + +II G + + H + V+S Sbjct: 64 TLSEYLQEWLENTAKQRVRDTTFINYRRAVNSRIIPVIGSHKLKDLKPLHGQRFVKSLID 123 Query: 129 ---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 +P ++ + AV+ E + NP VE P+ + W+ E+ + F ++ Sbjct: 124 EELSPKYIEYIFIVLKGALEDAVKWELLYKNPFEHVEIPRPRKVVNNTWSIEETKTFLAY 183 Query: 186 WSEGSQPRLA-FEFLLYSGLRCSDSCRAGVQHL---------------QNNIFSIKTQKT 229 + F L +G+R + +++ F KT Sbjct: 184 AKFDNPIYYHLFSLALNTGMRRGELLGLKWKNVDLVEGKISVTETLIYDELGFRFTEPKT 243 Query: 230 -GTIITVELPDGFMKLLAMTPI--------------GKETFFINNDKQKMNATQFSIWFK 274 G+ + + K L + F D + + + F+ Sbjct: 244 SGSKRLISIDQSLCKELKSYKAKQNEFKLAIGKAYEDNDLVFSREDGRPIYPRTLTTVFE 303 Query: 275 AKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324 A V K H +R AT+ G + G ++ +TY+ Sbjct: 304 RFIKTAQVPKIRFHDLRHTHATLLLKLGINPKVVSERLGHNSIKTTLDTYSH 355 >gi|239906167|ref|YP_002952906.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1] gi|239796031|dbj|BAH75020.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1] Length = 348 Score = 103 bits (258), Expect = 3e-20, Method: Composition-based stats. Identities = 64/347 (18%), Positives = 112/347 (32%), Gaps = 23/347 (6%) Query: 12 TKERTRHGKIIYYFRKGHGR-------RIRLPYPHESTFIPAYMSALTGSTPKREYINSP 64 +R+ +G +R G+GR + R F + P + Sbjct: 3 VHKRSNNGTYYVAYRDGNGRQHTRSFGKGRDGKREAEKFDEQVKAHKVIEVPLEPAPPTS 62 Query: 65 RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGV 123 KK L L Y + ++ ++ II +I I S V Sbjct: 63 GKKIF-LDELSQMYINAKKAEGKSIRRLKELAVILERHIIPAFAQRPVEQIRFDEIISLV 121 Query: 124 ES--RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 K +P + ++L ++ +F++ V E + NP ++PK + R T D+ + Sbjct: 122 GKVYAKRSPVTRGRYLAYLKTVFQFGVDNELIEKNPLRRWKKPKERPRDTR-LTVTDLNK 180 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLR--CSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVEL 237 K+ A E G+R S+ + N ++ KT T + + Sbjct: 181 IKAAAEPHLA--WAIEVAWNLGVRTGPSELLALKWSDVDWENQTVTVYATKTKTRRIIPI 238 Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSAT 295 D F+ L ++ FI Q Q S + +AG+ + VR AT Sbjct: 239 SDEFLARLREVKEAAQSPFIVEY-QGRPVKQISRAMRTACRRAGITYPVVLYDVRHLFAT 297 Query: 296 ISADAGATAHELMATYGWKTVDQAE--TYTKGADRIRLGIKNSRRIS 340 G + G ++ Y D R I R+ Sbjct: 298 TLLREGGDLSAVSNLMGHSSIQMTANNYYHLLGDEKRRTIAKLPRLE 344 >gi|82776366|ref|YP_402715.1| putative integrase [Shigella dysenteriae Sd197] gi|81240514|gb|ABB61224.1| putative integrase [Shigella dysenteriae Sd197] Length = 241 Score = 103 bits (258), Expect = 3e-20, Method: Composition-based stats. Identities = 45/224 (20%), Positives = 78/224 (34%), Gaps = 17/224 (7%) Query: 112 RKITTKHIRSGVESRKHT-PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170 I H+R ++ R + A SM +F+W + YV NPC V + K Sbjct: 4 DNIKPAHVRLYMDKRGLKSKTQANHEKASMSRVFRWGYERGYVKGNPCQGVSKFSLKPRD 63 Query: 171 IRPWTKEDMQQFKSFWSEGSQP-RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229 +T E+ + + + E S + A E R D + + + I+ KT Sbjct: 64 YY-FTDEE---YIAIYQEASPVLQCAMEIAYLCATRIGDIRKLTWDQVMSKGLFIQQGKT 119 Query: 230 GTIITVELPDGFM-KLLAMTPIGKETF-FINNDKQKMNATQFSIWFKAKATKAG------ 281 G + + L +G + F N + + T F+ ++ A Sbjct: 120 GKKQLKQYSERLTFALEQAKSLGGQHFVVCNKYGGQYSYTGFNDIWRKARAAASEKLGYP 179 Query: 282 VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 + + H + K D ++ E G KT Q TY + Sbjct: 180 ITGTFHDL-KAKGISDYD--GSSKEKQLFSGHKTEAQVLTYDRK 220 >gi|163939178|ref|YP_001644062.1| integrase family protein [Bacillus weihenstephanensis KBAB4] gi|163861375|gb|ABY42434.1| integrase family protein [Bacillus weihenstephanensis KBAB4] Length = 370 Score = 103 bits (258), Expect = 3e-20, Method: Composition-based stats. Identities = 44/288 (15%), Positives = 93/288 (32%), Gaps = 37/288 (12%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH-- 128 + + + + S+ + + + Y + +II G+ K+T+ H+++ V S + Sbjct: 68 GEYLESWFNTKKY-SVGIQTAKVLKGYLNSRIIPSLGNIKLAKLTSLHMQNYVNSLRDEG 126 Query: 129 -TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + + + +R + A+ E + N + PK E + W + ++Q F Sbjct: 127 LKRGTIEKIIKLIRNSLEHAIDLELITKNVAAKTKLPKADKEELTVWNEHEVQFFLKAAQ 186 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--------------TQKTGTII 233 + S+ + F L +G+R + + + + KT + + Sbjct: 187 D-SRYSIVFHMALVTGMREGELLGFRWKDVDLEKGHLTISQTLSHDGKTFLLGGKTKSSL 245 Query: 234 TVELPDG-----FMKLLAMTPIGK----------ETFFINNDKQKMNATQFSIWFKAKAT 278 L K A+ K + +N A Sbjct: 246 RKILLPASTVAKLKKHRAVVLKEKLSQGEEYQDNDLVMCTPSGTPINPANVRRSLNALIK 305 Query: 279 KAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324 K V K H +R AT+ G + G + +TY+ Sbjct: 306 KVAVPKIRFHDLRHTHATLLLAKGVNVKVISERLGHSNIKITLDTYSH 353 >gi|261366946|ref|ZP_05979829.1| tyrosine recombinase XerC [Subdoligranulum variabile DSM 15176] gi|282571064|gb|EFB76599.1| tyrosine recombinase XerC [Subdoligranulum variabile DSM 15176] Length = 359 Score = 103 bits (258), Expect = 3e-20, Method: Composition-based stats. Identities = 48/304 (15%), Positives = 102/304 (33%), Gaps = 43/304 (14%) Query: 75 ISEYRKSAHWGSL-AVNSRISF----ESYFDQIIRKSG---------DFDYRKITTKHI- 119 + EY + L + + + +F ++ + G + D KI +K I Sbjct: 23 VIEYLHYLDFVKLRSPRTVNGYYLDLRGFFRYMMIQWGRADATAKPEEIDLTKIDSKDIA 82 Query: 120 ---RSGVESRKHTPSSAI-------QFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRKT 168 + + SA + L++++ F + + + +P +V K Sbjct: 83 GIGKRDIFGYLDYARSANNGSKARARKLSALKGFFGYMCTQVNKITQDPTENVSLGAPKK 142 Query: 169 EGIRPWTKEDMQQFKSFWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226 + T+ + + + R L G+R ++ + +++ I T Sbjct: 143 TLPKYLTESESLELLNNIQSDFYERDFCIITLFLNCGMRLAELVSIDLGDFRDDTIRI-T 201 Query: 227 QKTGTIITVELPDGFMKLLAMTP---------IGKETFFINND-KQKMNATQFSIWFKAK 276 K G V L D + L K+ F++ +++ A + Sbjct: 202 GKGGKERLVYLNDACKQALERYAKVRGGLVNLSDKDALFVSKRTGKRLTARRVEQIVARC 261 Query: 277 ATKAGVNK---SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLG 332 AG++ S H +R +AT+ G L G + V + YT ++R Sbjct: 262 LQSAGLSGRGFSPHKLRHTAATLMYQGGVDMLALKEILGHENVSTTQIYTHINQQQLREA 321 Query: 333 IKNS 336 ++ S Sbjct: 322 VQAS 325 >gi|297172228|gb|ADI23207.1| integrase [uncultured Gemmatimonadales bacterium HF0770_11C06] Length = 296 Score = 103 bits (258), Expect = 3e-20, Method: Composition-based stats. Identities = 42/253 (16%), Positives = 92/253 (36%), Gaps = 12/253 (4%) Query: 98 YFDQIIRKSGDFDYRKITTKHIRSG--VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAI 155 + + GD ++TT + V +++ S+ + L +R F AV + + Sbjct: 1 MLARFVATVGDKRLDQVTTFDVERWKTVRAKQVRKSTVNRELNIVRGCFSRAVEWKRLVK 60 Query: 156 NPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS--EGSQPRLAFEFLLYSGLRCSDSCRAG 213 +P +V+ + + +R + ++++ + R+ E LL R S+ Sbjct: 61 SPMATVKPFRVENTRLRVLSPDEIRVVLTEAPQDLALIARVTLEGLL----RVSEVLSLM 116 Query: 214 VQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFF--INNDKQKMNATQFSI 271 +Q + + K + V + + L F + + Sbjct: 117 RSDIQRDYLVVTHTKNNKVRKVPISSDLRRALLARTHQSGYVFGETRYQGHPATQSTVTQ 176 Query: 272 WFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD-RI 329 F+ + G+ N S H +R A+ G + + GW+++ E YT D Sbjct: 177 AFRRVMARLGIANASHHTLRHTGASSMLADGISVRVVQEIGGWRSLRMLERYTHPTDAET 236 Query: 330 RLGIKNSRRISSV 342 R + ++ R++ V Sbjct: 237 RRAVASASRLTGV 249 >gi|325853917|ref|ZP_08171433.1| site-specific recombinase, phage integrase family [Prevotella denticola CRIS 18C-A] gi|325484254|gb|EGC87184.1| site-specific recombinase, phage integrase family [Prevotella denticola CRIS 18C-A] Length = 427 Score = 103 bits (258), Expect = 3e-20, Method: Composition-based stats. Identities = 59/318 (18%), Positives = 121/318 (38%), Gaps = 34/318 (10%) Query: 51 LTGSTPKREYINSPRKKPTTLKWL---ISEYRKSAHWGSLAVNS----RISFES--YFDQ 101 +T K Y+ R P TL L + EY++ +L+ + + S++S +F Q Sbjct: 90 ITAEYLKERYMQQSRPMP-TLAELYQSVCEYKEELQGRTLSKATVRAFKDSYKSFVHFLQ 148 Query: 102 IIRKSGDFDYRKITTKHIRS----GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINP 157 + ++ D ++ + + + SS L + + + A+++ YV +P Sbjct: 149 VRDRA-DCMPTEVDKTLLEDYRLFMLRDLGNKESSVGNRLRHLHQVIRKALQERYVREDP 207 Query: 158 CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGV 214 ++ + T T +D+Q+ ++ S RL F ++GL SD + + Sbjct: 208 FELID-IETPTYERNALTADDLQKLLAYRPHRSVDNHCRLIFLLGCFTGLAFSDLKKLRM 266 Query: 215 QHL-----QNNIFSIKTQKTGTIITVELPDGFMKLLAM-TPIGKETFFINNDKQKMNATQ 268 + S+ KT V L K+LA+ +P +E F + + Sbjct: 267 DDVYTFGDGRRYISLCRTKTQNRSIVPLLPIAEKILAIVSPGRREGLFFREF---PSNSN 323 Query: 269 FSIWFKAKATKAGVN----KSAHGVRKFSATIS-ADAGATAHELMATYGWKTVDQAETYT 323 F+ + KAG+ ++H R AT + G + G + + E Y Sbjct: 324 FNRTIQEICIKAGLPPHTQATSHTARHTFATTICLENGLPIETVSKMLGHRFISTTEIYA 383 Query: 324 KGADRIRLGIKNSRRISS 341 + + ++ + + S Sbjct: 384 R-VTKSKIAKEMQPLMGS 400 >gi|213691813|ref|YP_002322399.1| phage integrase family protein [Bifidobacterium longum subsp. infantis ATCC 15697] gi|254799327|sp|B7GQE1|XERC_BIFLI RecName: Full=Tyrosine recombinase xerC gi|213523274|gb|ACJ52021.1| phage integrase family protein [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320457907|dbj|BAJ68528.1| tyrosine recombinase [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 355 Score = 103 bits (258), Expect = 3e-20, Method: Composition-based stats. Identities = 52/327 (15%), Positives = 95/327 (29%), Gaps = 80/327 (24%) Query: 76 SEYRKSAHWGSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIRSGV--ESRKHTP 130 Y KS L+ N+ ++ + + G D +IT +RS + ESR H Sbjct: 14 VSYLKSNR--GLSANTLKAYRADLTACLHLFELRGVTDLNEITLDDLRSWMAVESRDHAR 71 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK--SFWSE 188 SS + ++R F WA A +P ++ P + T+ +Q + + Sbjct: 72 SSMARKTVAVRGFFAWAYEHGLTATDPAATLMTPSIPSTLPAVLTESQAEQLLDVAEHAV 131 Query: 189 GS----------------------------------------------------QPRLAF 196 + + Sbjct: 132 ATNQYKDDGGAAAASGSGKAAGKTADKSADTVNRSEAPARADKRDNARVTAESQRNAAIL 191 Query: 197 EFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKL---------- 244 E L +G+R ++ + + N + + + L Sbjct: 192 ELLYATGIRVAELVSMDIADIDFSNRTIKVTGKGNKQRVVPFGLPAQRALETWLEQGRPV 251 Query: 245 LAMTPIGK------ETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATIS 297 LA T F+ +++ A +AGV + S H +R +AT Sbjct: 252 LARTATDAVKSRAANALFLGARGGRIDQRIARDIVHRAAREAGVPDISPHALRHSAATHI 311 Query: 298 ADAGATAHELMATYGWKTVDQAETYTK 324 D GA E+ G ++ + YT Sbjct: 312 LDGGADLREVQEMLGHSSLKTTQRYTH 338 >gi|114566841|ref|YP_753995.1| integrase/recombinase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114337776|gb|ABI68624.1| integrase/recombinase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 306 Score = 103 bits (258), Expect = 3e-20, Method: Composition-based stats. Identities = 43/282 (15%), Positives = 90/282 (31%), Gaps = 31/282 (10%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSGV---- 123 LK+ I E+++ + ++ + ++ + + + IT+ I+S + Sbjct: 3 LKFAIKEFQEDREFRQISKATLTNYMGCLKEFHTYCLEKEIIEVTDITSNTIKSYLIYCQ 62 Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYV--AINPCLSVERPKRKTEGIRPWTKEDMQQ 181 + R + P++ L S+++ F + E NP V K + I ++ + + + Sbjct: 63 KERGNNPTTINSKLRSIKIFFNYLQEIEIFNEKNNPIHKVNYIKANVK-IEVFSDKQINE 121 Query: 182 FKSFWSE---------GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGT 231 S++ + LL +G+R + C + I K T Sbjct: 122 MLSYYRRIKTRDKSLYAYRDSTIIITLLGTGMRLGELCNLKWSDVDFENQHIILFGKLQT 181 Query: 232 IITVELPDGFM------KLLAMTPIGKET--FFINNDKQKMNATQFSIWFKAKATKAGVN 283 ++ + D KL GK F++ + ++ FK Sbjct: 182 QTSIPMADKLKSELQEYKLFCQKQFGKLPMFVFVDRTGKPLSPNAVKNMFKRLKQIMNFP 241 Query: 284 ---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 A+ R A G L + E Y Sbjct: 242 NVRCCAYDFRHTFAHRFLMNGGDVFTLQKLLRHSSPAMTERY 283 >gi|315181198|gb|ADT88112.1| phage integrase family protein [Vibrio furnissii NCTC 11218] Length = 395 Score = 103 bits (258), Expect = 3e-20, Method: Composition-based stats. Identities = 42/250 (16%), Positives = 87/250 (34%), Gaps = 15/250 (6%) Query: 101 QIIRKSGDFDYRKITTKHIRSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPC 158 K G I + I+ ++ P++ + + + +F+ A+ +V NP Sbjct: 135 HFYPKWGKKPLTDIGQQDIQKLLDGLLEGRKPATVNRLRSLVLRMFRLAMEWGFVDKNPG 194 Query: 159 LSVERPKRKTEGIRPWTKEDMQQFKSFWSE--GSQPRLAFEFLLYSGLRCSDSCRAGVQH 216 + + K R ++ ++ +F +E A +F L +G+R + + + Sbjct: 195 QYIRKLKENNVRQRFLSRAEVSRFIKACNEEPNRTQSNALKFALLTGMRIGEITSSKWEC 254 Query: 217 L----QNNI-FSIKTQKTGTIITVELPDGFMKLL---AMTPIGKETFFINNDKQKMNATQ 268 L N + K+G TV L +++ K + D Sbjct: 255 LTVDDDGNWSLFLPHTKSGLSRTVLLNQLAKEVIHDQRRFQQPKNPYIFAGDAPGRPIAH 314 Query: 269 FSIWFKAKATKAGV--NKSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKG 325 F AG+ N H +R A+I ++G AT +++ G ++ + Y Sbjct: 315 PKKAFARIKKAAGITDNFRIHDLRHSFASILINSGNATLYDVQHLLGHQSPQTSTRYAHL 374 Query: 326 ADRIRLGIKN 335 A + Sbjct: 375 ASSRLREVSA 384 >gi|298245910|ref|ZP_06969716.1| integrase family protein [Ktedonobacter racemifer DSM 44963] gi|297553391|gb|EFH87256.1| integrase family protein [Ktedonobacter racemifer DSM 44963] Length = 328 Score = 103 bits (258), Expect = 3e-20, Method: Composition-based stats. Identities = 47/277 (16%), Positives = 86/277 (31%), Gaps = 41/277 (14%) Query: 86 SLAVNSRISFESYFDQII----RKSGDFDYRKITTKHIRSGVESRKHTPS---------- 131 L N+ S++ ++ G + K+T H+R V TPS Sbjct: 17 RLGENTHGSYQRALRHLVNLLNSVYGIDELEKVTILHLRDCVRHMIDTPSEVVRERSYGK 76 Query: 132 -------SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 S ++ +V F W ++E + NP ++ PK + ++ +T E + + Sbjct: 77 KSNLADSSVKTYVNIWKVFFNWCYQEELIDSNPSARLKAPKLEKRVLKTFTSEHIYRMLD 136 Query: 185 FW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240 G + + LL +G+R + ++ + + ++ K V + Sbjct: 137 SLNLSTDIGFRDYVILLLLLDTGIRLDEIGTLLLEDVHDTYIKVR-GKGRKEREVGIHPD 195 Query: 241 F--------MKLLAMTPIGKETFFINNDKQKMNA-------TQFSIWFKAKATKAGVNKS 285 K + FI+ KQ K V S Sbjct: 196 VSKQLWKYVHKHRHPGNPDEPKIFIDCSKQGRGKAISRAGVKGMLARLKVALDLKDVRLS 255 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 AH R A + G +L G V + Y Sbjct: 256 AHTFRHTFAKMYLAQGGDIFKLSREMGHTNVRITQKY 292 >gi|296170210|ref|ZP_06851803.1| integrase [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295895086|gb|EFG74804.1| integrase [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 387 Score = 103 bits (258), Expect = 3e-20, Method: Composition-based stats. Identities = 51/301 (16%), Positives = 98/301 (32%), Gaps = 32/301 (10%) Query: 55 TPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRK 113 TP E + + TL+ + + + LA +R ++ + D I+ GD + Sbjct: 73 TPPAERAARRQAEKLTLRTYANTWLDNK--TKLARRTRDNYRGHLDNHILPALGDLGLAE 130 Query: 114 ITTKHIRSGVESRKHTPSSAI-QFLTSMRVLFKWAVRQEYVAINPC--LSVERPKRKTEG 170 IT +H+R+ + Q + +F AV + + NPC + K Sbjct: 131 ITPEHVRTWFAGLGTEHDTRNAQAYAVLNGVFNTAVADDLIDRNPCRIKGAAQVKHAKRS 190 Query: 171 IRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK-- 228 + + + + RLA + GLR + + + +++ ++ Sbjct: 191 VVLLDAAQLTELAVKMPD--DARLAVLLAGWCGLRKGEVFALRRCDIAADGSTVRIERAV 248 Query: 229 --------------TGTIITVELPD-----GFMKLLAMTPIGKETFFINND--KQKMNAT 267 + V +P L T G E Sbjct: 249 TYREGKFEVGPTKTRESRRVVSVPPHVRPAVLDHLARHTAEGDEALVFTEPSTGSFAGEK 308 Query: 268 QFSIWFKAKATKAG-VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 +F ++A G H +R + ++A GAT ELM G + + + Y A Sbjct: 309 RFRTAWEAAREAIGQPELHFHDLRHAAGVMAAQTGATLRELMDRLGHTSPNMSMRYQHTA 368 Query: 327 D 327 + Sbjct: 369 E 369 >gi|258511054|ref|YP_003184488.1| integrase family protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257477780|gb|ACV58099.1| integrase family protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 391 Score = 103 bits (258), Expect = 3e-20, Method: Composition-based stats. Identities = 54/337 (16%), Positives = 114/337 (33%), Gaps = 37/337 (10%) Query: 45 PAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QII 103 A SA+ E K TL S + SL +R ++ I+ Sbjct: 46 RAAKSAMMEHLRSLEDTPVVHAKSFTLHEWASRWFADKS-SSLRPWTRRTYHHVLQAYIL 104 Query: 104 RKSGDFDYRKITTKHIRSGVESRKH--TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV 161 + G KI +HI++ + P + + ++ AV+ Y+ +P L+V Sbjct: 105 PELGKMPISKIEARHIQALYRKLSNRLKPVTVHRIHRVLKTCLLAAVKAGYLDKSPFLNV 164 Query: 162 ERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP-RLAFEFLLYSGLRCSDSCRAGVQHLQNN 220 E P+ KT + D + ++ E +A +++G+R + + + + Sbjct: 165 EPPEHKTPPKPVLSVNDAFRLLAWLREHRPTSYMAAFLAIHTGMRMGEIAGLQWRDIDLD 224 Query: 221 IFSIKTQKT-----------------GTIITVELPDGFMKLLAMTPIGK----------E 253 I+ ++T G+ + + + L + E Sbjct: 225 TGVIQLERTRYRPKGGQDFLGPPKTFGSRRRIVVTREVVDELRRWKQSQQEIERESWTPE 284 Query: 254 TFFINNDKQ-KMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATY 311 +F + + F+ + + G+ S HG+R AT ++G + Sbjct: 285 SFVVRLPNSAPPSPASFNNAIQNARKELGLPPVSFHGLRHTHATWLLESGVDLKIVSERL 344 Query: 312 GWKTVD-QAETYTKGADRIRLGIKNSRRISSVVDSDD 347 G ++ A+ Y D L + ++ ++ S Sbjct: 345 GHSSITITADIYAHVTD--ALQREAIEKLQRMMRSRR 379 >gi|138894424|ref|YP_001124877.1| DNA integration/recombination/invertion protein [Geobacillus thermodenitrificans NG80-2] gi|134265937|gb|ABO66132.1| DNA integration/recombination/invertion protein [Geobacillus thermodenitrificans NG80-2] Length = 387 Score = 103 bits (258), Expect = 3e-20, Method: Composition-based stats. Identities = 50/352 (14%), Positives = 110/352 (31%), Gaps = 52/352 (14%) Query: 29 HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLA 88 +G+RI+ L + E + +L I +R + L+ Sbjct: 24 NGKRIKRTKTVHVKTKKEAEKELAKFIAEIEAGEYIKPAKMSLSDFIQLWRDNYAEKQLS 83 Query: 89 VNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH------------TPSSAIQ 135 + ++ +Y + +II + G I H+ + + K + ++ Sbjct: 84 PKTFETYNNYINTRIIPQLGHLQLADIKPIHLIRFLNNLKKDETRLDGKKGSLSEATINY 143 Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-SEGSQPRL 194 + ++ +F AV +++ +NP + + K + + + + E + RL Sbjct: 144 YRRILKNIFNRAVEWKFLQVNPAEKLPKEKEDIGKGDVYDENETRLLLKCLEKEDLKWRL 203 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-------------------KTQKTGTIITV 235 F L GLR + + + ++ K++K+ I + Sbjct: 204 YFTLALTCGLRKGELLALQWEDIDLESGTLYVKHSLSYTKEKGFFLKEPKSKKSKREIAI 263 Query: 236 E--LPDGFMKLLAMTPIGKETF------------FINNDKQKMNATQFSIWFKAKATKAG 281 + K + KE F + + + + ++ + Sbjct: 264 PSFVLPLLKKYKNVRLREKEKLQDEWEGGNYNFVFATWNGKPHHHSYPRTKWERFLKRNN 323 Query: 282 VNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA----ETYTKGADR 328 + H +R SATI + G + G + TK ADR Sbjct: 324 LRYIRPHDLRHTSATIMLNNGVNYKTVSERLGHSSTRITFDFYVHRTKEADR 375 >gi|304440179|ref|ZP_07400069.1| tyrosine recombinase XerC [Peptoniphilus duerdenii ATCC BAA-1640] gi|304371228|gb|EFM24844.1| tyrosine recombinase XerC [Peptoniphilus duerdenii ATCC BAA-1640] Length = 321 Score = 103 bits (258), Expect = 3e-20, Method: Composition-based stats. Identities = 40/276 (14%), Positives = 104/276 (37%), Gaps = 30/276 (10%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG----VESRKHTPSSAIQFLTSM 140 L +++ + Y +++ + + + I + V ++K+ ++ + +++ Sbjct: 43 RKLNFDTKELDDRYLEKMSLDL----IKTVNKQDIYAYNSYLVHTKKNKMNAVSRKNSAI 98 Query: 141 RVLFKWAV-RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG---------- 189 R F + + + ++P ++ PK + + ++ ++F + Sbjct: 99 RTFFNYLTSKINVLEVDPSSDLDMPKVRRTIPTALSLDEAKRFLKTIEDFNYNGKNNDFL 158 Query: 190 -SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG----FMKL 244 S+ F L G+R S+ C + L+++ K ++ L Sbjct: 159 KSRDFCIATFFLNCGMRLSELCGINMFDLEDDNTIKILGKGNKERSIYLNKACIHALDNY 218 Query: 245 LAMTP-IGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADA 300 L P + + F++ +K ++ + +G++ S H +R +AT+ Sbjct: 219 LEFRPEVESKALFLSRNKARITPRAVQMMIDKYIVMSGLDPDKYSVHKLRHTAATLMYQY 278 Query: 301 G-ATAHELMATYGWKTVDQAETYTKGAD-RIRLGIK 334 G L G ++V E YT +D +++ I+ Sbjct: 279 GDVDIRSLQKVLGHESVQTTEIYTHVSDEQVKRAIE 314 >gi|241662627|ref|YP_002980987.1| integrase family protein [Ralstonia pickettii 12D] gi|240864654|gb|ACS62315.1| integrase family protein [Ralstonia pickettii 12D] Length = 412 Score = 103 bits (258), Expect = 3e-20, Method: Composition-based stats. Identities = 47/293 (16%), Positives = 90/293 (30%), Gaps = 19/293 (6%) Query: 50 ALTGSTPK---REYINSPRKKPTTLKWLISEYRK--SAHWGSLAVNSRISFESYFDQIIR 104 AL G + R+ T L +Y K S + + F+ Y Sbjct: 85 ALNGEIATGTNPAELKRIRRAEMTFGDLFDQYYKNHSLPNKKTSDEDKQKFDQYLSSNRD 144 Query: 105 --KSGDFDYRKITTKHIRSGVESRK-HTPSSAIQFLTSMRVLFKWAVRQE-YVAINPCLS 160 I+ I +A + L + +F A+ + +NPC Sbjct: 145 GVNLASRQLSAISKADIAQLFGKISMEHKITANRVLALVSSIFGKAIEWGIWNQMNPCQG 204 Query: 161 VERPKRKTEGIRPWTKEDMQQFKSF--WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ 218 + R + + R +++ +F + R L +G R S+ + + Sbjct: 205 IRRNRENSR-DRFLHPDELPKFFEHVLAYPNATLRDYMLVSLLTGARRSNVLAMRWEDVN 263 Query: 219 NNIFSIK--TQKTGTIITVELPDGFMKLLAMTP----IGKETFFINNDKQKMNATQFSIW 272 + K GT +V L + LL F + + + Sbjct: 264 LERAEWRIHETKNGTPQSVPLVPDAVALLRNRQEMPECEDSPFVFPGTGKSGHLVEPKKA 323 Query: 273 FKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 +K T+AG+ + H +R+ + A GA + + K+ Y + Sbjct: 324 WKIVLTQAGIKDLRLHDLRRTMGSWQAGTGANLSVIGRSLNHKSTATTAIYAR 376 >gi|121594962|ref|YP_986858.1| phage integrase family protein [Acidovorax sp. JS42] gi|330824224|ref|YP_004387527.1| integrase family protein [Alicycliphilus denitrificans K601] gi|120607042|gb|ABM42782.1| phage integrase family protein [Acidovorax sp. JS42] gi|321116506|dbj|BAJ72205.1| integrase [Acidovorax sp. KKS102] gi|329309596|gb|AEB84011.1| integrase family protein [Alicycliphilus denitrificans K601] Length = 400 Score = 103 bits (258), Expect = 3e-20, Method: Composition-based stats. Identities = 66/322 (20%), Positives = 113/322 (35%), Gaps = 24/322 (7%) Query: 48 MSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKS 106 A + +K T+K L + +++ S++ D +I Sbjct: 77 WLAEVRRGGDPGLDKAEARKAPTVKELCGRFMDDHSKPHNKPSTQASYQYQIDNFVIPAF 136 Query: 107 GDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAI--NPCLSVERP 164 G ++T I + ++ + +P+ A + L+ +R +F A Y NPC V P Sbjct: 137 GSKKVHEVTRHDITALMKRMERSPTQANRVLSLVRKMFNLAELWGYRPDGSNPCRHV--P 194 Query: 165 KRKTEGIRPWTKED--------MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH 216 K +G ++ + + ++ E LA R S+ Sbjct: 195 KYPEKGSTRLITDEQMVSLFAYLDKAEAEGLEHPIYLLAVRLQFEFAARMSEILLLQWDW 254 Query: 217 LQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFF----INNDKQKMNATQFS 270 L N KTG + L + +LL P + + I + + + + Sbjct: 255 LDLPNGRVVWPDSKTGDMSK-PLSEEARRLLTNAPRYGNSPYVCPAILDHDKPLGPHSYY 313 Query: 271 IWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD-- 327 ++ +AGV K HG+R SAT A++G MA KTV Y D Sbjct: 314 QAWRRILDRAGVPKVGTHGIRHRSATDIANSGIPVKVGMALTAHKTVAMFMRYVHTEDDP 373 Query: 328 -RIRLGIKNSRRISSVVDSDDP 348 R + SRR S V +P Sbjct: 374 VRKAAELVASRRKSVVGTRQEP 395 >gi|269964616|ref|ZP_06178854.1| hypothetical protein VMC_02840 [Vibrio alginolyticus 40B] gi|269830515|gb|EEZ84736.1| hypothetical protein VMC_02840 [Vibrio alginolyticus 40B] Length = 402 Score = 103 bits (258), Expect = 3e-20, Method: Composition-based stats. Identities = 43/250 (17%), Positives = 87/250 (34%), Gaps = 15/250 (6%) Query: 101 QIIRKSGDFDYRKITTKHIRSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPC 158 K G I + I+ ++ P++ + + + +F+ A+ YV NP Sbjct: 141 HFYPKWGKKPLTDIGQQDIQKLLDGLLEGRKPATVNRLRSLVLRMFRLAMEWGYVDSNPG 200 Query: 159 LSVERPKRKTEGIRPWTKEDMQQFKSFWSE--GSQPRLAFEFLLYSGLRCSDSCRAGVQH 216 + + K R ++ ++ F +E A +F L +G+R + + + Sbjct: 201 QYIRKLKENNVRQRFLSRAEVSSFIKACNEEPNRTQSNALKFALLTGMRIGEITGSKWEC 260 Query: 217 L----QNNI-FSIKTQKTGTIITVELPDGFMKLL---AMTPIGKETFFINNDKQKMNATQ 268 L N + K+G TV L + +++ K + D Sbjct: 261 LTVDDDGNWSLFLPHTKSGLSRTVLLNNLAKEVIHDQRRFQQPKNPYIFAGDAPGRPIAH 320 Query: 269 FSIWFKAKATKAGV--NKSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKG 325 F AG+ N H +R A+I ++G AT +++ G ++ + Y Sbjct: 321 PKKAFARIKKAAGITDNFRIHDLRHSFASILINSGNATLYDVQHLLGHQSAQTSTRYAHL 380 Query: 326 ADRIRLGIKN 335 A + Sbjct: 381 ASSRLREVSA 390 >gi|118464288|ref|YP_880725.1| integrase [Mycobacterium avium 104] gi|118165575|gb|ABK66472.1| integrase [Mycobacterium avium 104] Length = 368 Score = 103 bits (258), Expect = 3e-20, Method: Composition-based stats. Identities = 51/320 (15%), Positives = 104/320 (32%), Gaps = 34/320 (10%) Query: 55 TPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRK 113 TP E + + TL+ + + LA +R +++ + D ++ GD Sbjct: 54 TPPAERAARRQAEKLTLRTYAKTWLDNK--TKLARRTRDNYQGHLDNHVLPALGDLGLAD 111 Query: 114 ITTKHIRSGVESRKHTPSSAI-QFLTSMRVLFKWAVRQEYVAINPCL--SVERPKRKTEG 170 IT +H+R+ + + Q + +F AV + + NPC + K Sbjct: 112 ITPEHVRTWFAGLGNEHETRNAQAYAVLNGVFNTAVADDLIDRNPCRIRGAAQVKHARRS 171 Query: 171 IRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL------------- 217 + + + RL + GLR + + Sbjct: 172 VVLLDATQLTALAEKMPD--DARLGVLLAGWCGLRKGEVFALRRGDVAADGSSVRIERSV 229 Query: 218 --QNNIFSIKTQKTG-TIITVELPDGFMKLLA-------MTPIGKETFFINNDKQKMNAT 267 + F + KT + V +P + F + Sbjct: 230 TYREGRFEVGPTKTRESRRVVSVPPHVRPAVLEHLQRHVADGDDALVFVEPSTGSFAGEK 289 Query: 268 QF-SIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 +F + W A+A + H +R + ++A GAT ELM G + + + Y A Sbjct: 290 RFRTAWESARAAIGQPDMHFHDLRHAAGVMAAQTGATVRELMDRLGHTSPNMSMRYQHTA 349 Query: 327 DRIRLGIKNSRRISSVVDSD 346 + + ++S++ ++ Sbjct: 350 EGR--AAALADKLSALASTN 367 >gi|78356628|ref|YP_388077.1| site-specific recombinase XerD-like [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78219033|gb|ABB38382.1| Site-specific recombinase XerD-like protein [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 332 Score = 103 bits (258), Expect = 3e-20, Method: Composition-based stats. Identities = 45/287 (15%), Positives = 91/287 (31%), Gaps = 38/287 (13%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITT--------KHIRSGVESRKHTPSSAIQF 136 + + + Q D T + + + SS + Sbjct: 30 KGYSSATVRGYACDLAQFEDFLQRRDMSLDTPADIVPRTIHDFLADLHRQHVGKSSMGRK 89 Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG------- 189 L+++R F++ R+ ++ P + P++ R + ++ Sbjct: 90 LSALRGFFRYLARKGFIRSVPTEGITNPRQAQRSPRALNVDQAYAVLDTRTQAASRAQVH 149 Query: 190 ----------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELP 238 ++ E L SGLR S++ + H + IK T K V L Sbjct: 150 VRQAHKREQLTRDLALAELLYGSGLRISEALALDLCHTDPSSGLIKVTGKGSKERIVPLS 209 Query: 239 D----------GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SA 286 D + L ++ ++ F+ ++N Q + AG+ + S Sbjct: 210 DTSRQALQLWLDVRETLDVSGGAEQAVFLGARGGRLNRRQALRIIEDLCRAAGLPQAVSP 269 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 H +R AT +AGA + G + + + YT R + + Sbjct: 270 HALRHSFATHLLEAGADMRSVQELLGHERLTTTQRYTHLTLRKIVEV 316 >gi|319409436|emb|CBI83085.1| integrase/recombinase XerD [Bartonella schoenbuchensis R1] Length = 312 Score = 103 bits (257), Expect = 3e-20, Method: Composition-based stats. Identities = 40/286 (13%), Positives = 91/286 (31%), Gaps = 35/286 (12%) Query: 73 WLISEYRK--SAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH-----IRSGVES 125 +I + + SA G+ A + ++++ + + + + S + + Sbjct: 5 AVIDRFLEMMSAERGACAH-TLSAYQNDLQWAHDQLCSRSVSLFSAQREDLINLLSLMHT 63 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 +S + L+++R +++ + +P ++ P+++ + ++ + + Sbjct: 64 AGFAATSQARRLSTLRQFYQFLYAEGLRTDDPSHDIDTPRQRRLLPKTMNEDTVTKLLDR 123 Query: 186 --------------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231 + ++ E L +GLR S+ VQ ++ I + G Sbjct: 124 AQLEVDQTDYGSKNHMRALRLQVLIEMLYATGLRISELVSLPVQAVRGKEQFIVVRGKGE 183 Query: 232 IITVELP---------DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIW-FKAKATKAG 281 + L + F A QF K A +AG Sbjct: 184 KERMVLLSDKACQVISQWLVLRDQGKDAASFYLFPARSSTGYVARQFVARGLKELAERAG 243 Query: 282 VNKS---AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 V S H +R A+ GA + G + + YT Sbjct: 244 VKSSNFSPHVLRHAFASHLLQNGADLRVVQHLLGHCDISTTQIYTH 289 >gi|237811004|ref|YP_002895455.1| phage integrase family protein [Burkholderia pseudomallei MSHR346] gi|237503562|gb|ACQ95880.1| phage integrase family protein [Burkholderia pseudomallei MSHR346] Length = 349 Score = 103 bits (257), Expect = 3e-20, Method: Composition-based stats. Identities = 44/282 (15%), Positives = 98/282 (34%), Gaps = 19/282 (6%) Query: 61 INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120 I + TT+ + Y + + +++ + ++ G + +T + Sbjct: 51 IQRAPSEKTTVADALDRYEREIV-PTKKASTQRREGARIRELKANFGKYSLAAVTPDLVS 109 Query: 121 SGVESRKHTPSSAIQF---LTSMRVLFKWAVRQEYVA--INPCLSVERPKRKTEGIRPWT 175 + R + L + LF A+++ ++ NP ++ +P R + Sbjct: 110 RYRDDRLARGKANNTVRLELALLGHLFNVAIKEWHIGLIFNPVANIRKPSPGEGRNRRLS 169 Query: 176 KEDMQQFKSFWSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGT 231 + + + + + S P L + +G+R S+ + + + K Sbjct: 170 ESEQAKLLATVDQHSNPMLGWIVRLAIETGMRQSEILGLRRGQVDLERRVVRLTDTKNNA 229 Query: 232 IITVELPDGFMKLLAMT------PIGKETFFINNDKQ--KMNATQFSIWFKAKATKAG-V 282 TV L +L PI + F + K A QF+ + + G + Sbjct: 230 ARTVPLTKLAALVLQNALGNPVRPIDTDLVFFGEPGRDGKRRAYQFTKVWNGLKKRTGLI 289 Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 + H +R + + +AG T E+ + G K++ YT Sbjct: 290 DFRFHDLRHEAVSRLVEAGLTDQEVASISGHKSMQMLRRYTH 331 >gi|262373155|ref|ZP_06066434.1| tyrosine recombinase XerC [Acinetobacter junii SH205] gi|262313180|gb|EEY94265.1| tyrosine recombinase XerC [Acinetobacter junii SH205] Length = 311 Score = 103 bits (257), Expect = 3e-20, Method: Composition-based stats. Identities = 48/286 (16%), Positives = 97/286 (33%), Gaps = 28/286 (9%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYR--KITTKHIRSGVESR----K 127 L+S + K + + ++ +++ I +R + +R + Sbjct: 14 LLSMWLKERIIQNQSEHTIEAYQRDLTDFFNFCDSKSLALYDIEASDLREYLANRVEKDQ 73 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + SS + LTS+R KWA + +Y+ NP + ++ E + Q Sbjct: 74 LSSSSLQRHLTSIRQFMKWAEQGQYLQQNPSEDFKLKRQPRPLPGMVDIETVHQILDQAP 133 Query: 188 EG--------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---- 235 + + E L SGLR ++ ++ + N ++ G + Sbjct: 134 PDKPIEQQLWLRDKAILELLYSSGLRLAELQGLMIKDIDFNRQLLRITGKGNKTRIVPFG 193 Query: 236 -ELPDGFMKLLAMTPI------GKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSA 286 + D ++ L + I FI+ ++ Q K +A +AGV + Sbjct: 194 QKAKDSLIEWLKIYRIWQGEFNLDSAVFISQRGNRLTPRQIENRVKLQAQRAGVNVDLHP 253 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 H +R A+ A + G + + YT D +L Sbjct: 254 HLLRHCFASHMLSASGDLRSVQEMLGHSNLSTTQIYTH-VDFDQLA 298 >gi|229137159|ref|ZP_04265778.1| Prophage LambdaBa04, site-specific recombinase, phage integrase [Bacillus cereus BDRD-ST26] gi|228646331|gb|EEL02546.1| Prophage LambdaBa04, site-specific recombinase, phage integrase [Bacillus cereus BDRD-ST26] Length = 378 Score = 103 bits (257), Expect = 3e-20, Method: Composition-based stats. Identities = 46/292 (15%), Positives = 95/292 (32%), Gaps = 37/292 (12%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH 128 TL + E+ ++ + + I++ + +II G + + H + V+S Sbjct: 64 TLSEYLQEWLENTAKQRVRDTTFINYRRAVNSRIIPVIGSHKLKDLKPLHGQRFVKSLID 123 Query: 129 ---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 +P ++ + AV+ E + NP VE P+ + W+ E+ + F ++ Sbjct: 124 EELSPKYIEYIFIVLKGALEDAVKWELLYKNPFEHVEIPRPRKVVNNTWSIEETKTFLTY 183 Query: 186 WSEGSQPRLA-FEFLLYSGLRCSDSCRAGVQHL---------------QNNIFSIKTQKT 229 + F L +G+R + +++ F KT Sbjct: 184 AKFDNPIYYHLFLLALNTGMRRGELLGLKWKNVDLVEGKVSVTETLIYDELGFRFTEPKT 243 Query: 230 -GTIITVELPDGFMKLLAMTPI--------------GKETFFINNDKQKMNATQFSIWFK 274 G+ + + K L + F D + + + F+ Sbjct: 244 SGSKRLISIDQSLCKELKSYKAKQNEFKLAIGKAYEDNDLVFSREDGRPIYPRTLTTVFE 303 Query: 275 AKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324 A V K H +R AT+ G + G ++ +TY+ Sbjct: 304 RFIKTAQVPKIRFHDLRHTHATLLLKLGINPKIVSERLGHNSIKTTLDTYSH 355 >gi|29376760|ref|NP_815914.1| phage integrase family site specific recombinase [Enterococcus faecalis V583] gi|227517099|ref|ZP_03947148.1| phage integrase family site specific recombinase [Enterococcus faecalis TX0104] gi|227555253|ref|ZP_03985300.1| phage integrase family site specific recombinase [Enterococcus faecalis HH22] gi|255975282|ref|ZP_05425868.1| integrase [Enterococcus faecalis T2] gi|307285277|ref|ZP_07565421.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX0860] gi|29344225|gb|AAO81984.1| site-specific recombinase, phage integrase family [Enterococcus faecalis V583] gi|227075470|gb|EEI13433.1| phage integrase family site specific recombinase [Enterococcus faecalis TX0104] gi|227175635|gb|EEI56607.1| phage integrase family site specific recombinase [Enterococcus faecalis HH22] gi|255968154|gb|EET98776.1| integrase [Enterococcus faecalis T2] gi|306502854|gb|EFM72116.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX0860] gi|315573394|gb|EFU85585.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX0309B] gi|315581045|gb|EFU93236.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX0309A] Length = 369 Score = 103 bits (257), Expect = 3e-20, Method: Composition-based stats. Identities = 53/358 (14%), Positives = 121/358 (33%), Gaps = 38/358 (10%) Query: 22 IYYFRKGHGRRIRLPYPHESTFIPAYMSALT----GSTPKREYINSPRKKPTTLKWLISE 77 + R GR+I + + Y ++ S + TL I + Sbjct: 15 RWEGRFPRGRKIDGKLKYGYIYGSTYQEVRQKLYVAKANQQTIYQSRGQGAFTLNEWIEQ 74 Query: 78 YRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVE---SRKHTPSSA 133 + + +++ S+ + +++ GD +I + VE ++ + S+ Sbjct: 75 WLVIVK-KEVKLSTFASYSYKLSNYVLKTMGDSALNEIDDLRLNKLVEDLIAQGLSKSTI 133 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF-WSEGSQP 192 + AV+ +++ NPC ++ PK K IR E+ ++ ++ + Q Sbjct: 134 CVIFGILSRALNHAVKAKHLKSNPCSTISLPKPKRRHIRALDIEEQKKLENVAYKNPQQQ 193 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIK--------------------TQKT- 229 L+ L++GLR + + + + + +K KT Sbjct: 194 GLSVIVALHTGLRIGELAALRWEDINFKKDTIHVKHTFQRVSVSSFGESTQLYYDCTKTI 253 Query: 230 GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQ-FSIWFKAKATKAGVNK-SAH 287 + + + + L + F+ + K + + +F K ++K H Sbjct: 254 NSERIIPMSNTVKNALKCQKEHSQGKFVFSRNNKPCEPRLLTYYFHKLRDKVQLDKVHFH 313 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSVVD 344 +R AT ++ + + A G + + Y R IK +R+ + Sbjct: 314 QLRHTFATRCLESTSDIVSVSALLGHSSTQMTLDIYADSLLEQR--IKAIKRMERTIA 369 >gi|83943902|ref|ZP_00956359.1| tyrosine recombinase [Sulfitobacter sp. EE-36] gi|83845149|gb|EAP83029.1| tyrosine recombinase [Sulfitobacter sp. EE-36] Length = 315 Score = 103 bits (257), Expect = 3e-20, Method: Composition-based stats. Identities = 50/276 (18%), Positives = 84/276 (30%), Gaps = 28/276 (10%) Query: 85 GSLAVNSRISFESYFDQII--------RKSGDFDYRKITTKHIRSGVESRKHT---PSSA 133 A N+ +++ + G +IT +R+ + + P S Sbjct: 28 KGAAENTITAYQGDLVDFLAFMTLHKGDSQGLGALSQITISDMRAWMAQTRSGDVGPRSM 87 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS-------FW 186 + L++++ ++W +E LS PK + RP + Q Sbjct: 88 ARKLSAVKAFYRWLAEREGFEPTAVLSTRSPKFPKKLPRPLAIDAAQAMIDSVEMQSRHA 147 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM---- 242 ++ L GLR S++ K G V + Sbjct: 148 WVAARDVAVLTLLWGCGLRISEALGLKGADAPLPEVLRIIGKGGKERVVPVLPAARDAVD 207 Query: 243 KLLAMTPIGKE---TFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATIS 297 L + P GKE F + A S + G+ SA H +R AT Sbjct: 208 AYLRVCPFGKERDAPLFRAMRGGPLAARAISQVMADARMQLGLPASATPHALRHSFATHL 267 Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 DAG + G ++ + YT D RL Sbjct: 268 LDAGGDLRAIQELLGHASLSTTQAYT-AVDTARLMD 302 >gi|218667058|ref|YP_002425468.1| site-specific recombinase, phage integrase family [Acidithiobacillus ferrooxidans ATCC 23270] gi|218519271|gb|ACK79857.1| site-specific recombinase, phage integrase family [Acidithiobacillus ferrooxidans ATCC 23270] Length = 349 Score = 103 bits (257), Expect = 3e-20, Method: Composition-based stats. Identities = 53/317 (16%), Positives = 101/317 (31%), Gaps = 20/317 (6%) Query: 17 RHGKIIY-YFRKGHGRRIR-LPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74 + GK + F +G+RIR E +L ++ + + T Sbjct: 4 KRGKTWWISFTTPNGQRIRRSAGTTEKAQAEELHDSLKAQAWRQ--VQLGDRPAYTWDDA 61 Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH--TPSS 132 + S ++ E + + R + I + ++ +K + S+ Sbjct: 62 GVRWLDEKA----HKASLVTDEIFLAWLQDHFRGVPLRDLNRDRIMTVLQIKKTQTSAST 117 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192 A ++ +R + + AV ++ P + T+ +R T E + + Sbjct: 118 ANHYMALIRSMLRAAVEWGWLDYPP--LLRPYPTPTQRVRWLTPEQAVLLLNELPPHLRD 175 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQKTGTIITVELPDGFMKLLAMT 248 AF +GLR S+ L K ITV L D + +L Sbjct: 176 MAAFSLA--TGLRRSNVTGLEWSQLDLGRKIAWIHADQAKARKPITVPLDDVAISILRAQ 233 Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHEL 307 + +++ W K +AG+ N H +R A+ AG + L Sbjct: 234 IGNHPIYVFTYCGKRVTQVNTKAW-KKALERAGIENFRWHDLRHTWASWHIQAGTPLNTL 292 Query: 308 MATYGWKTVDQAETYTK 324 GW + + Y Sbjct: 293 QDLGGWHSSEMVRKYAH 309 >gi|24374071|ref|NP_718114.1| phage integrase family site specific recombinase [Shewanella oneidensis MR-1] gi|24348549|gb|AAN55558.1|AE015694_7 site-specific recombinase, phage integrase family [Shewanella oneidensis MR-1] Length = 287 Score = 103 bits (257), Expect = 4e-20, Method: Composition-based stats. Identities = 43/269 (15%), Positives = 91/269 (33%), Gaps = 25/269 (9%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE----SRK 127 L+ ++ + +R ++ Q+ + + IT + + + R Sbjct: 2 SSLLQQFHDEISLRGYSARTRNAYLYAITQL-QHYANQPLDNITDEQLTAYFRYLNLERH 60 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 H+ ++ L + ++ +++++ + + PKR + + + +D+ + Sbjct: 61 HSRATLKLQLNGIHFFYEHVLKRDF-----TIQLSLPKRPHKLPQLLSCQDIAALL-YHC 114 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLL 245 + + R GLR S+ V + +K K V L + LL Sbjct: 115 QNLKQRAMLALCYGCGLRVSELTHIKVADIDGQRQLLKVCQGKGACDRWVILSPTLLILL 174 Query: 246 AMT-----PIGKETFFINNDK---QKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSAT 295 P+ E F + ++ + F A A + S H +R AT Sbjct: 175 RQYWQAYHPV--EWLFASTYHDVVYPLHESTFRKALAKAARLASITKPCSPHSLRHAYAT 232 Query: 296 ISADAGATAHELMATYGWKTVDQAETYTK 324 AG H+L A G ++ E Y Sbjct: 233 HQLQAGMPLHQLQAQLGHHSIKSTERYLH 261 >gi|326943857|gb|AEA19747.1| integrase/recombinase [Bacillus thuringiensis serovar chinensis CT-43] Length = 314 Score = 103 bits (257), Expect = 4e-20, Method: Composition-based stats. Identities = 35/295 (11%), Positives = 90/295 (30%), Gaps = 40/295 (13%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFD--------YRKITTKHIRSGVESRKHT------- 129 N+ +E+ + I+ D + + + + + T Sbjct: 17 QGKRENTIKQYETTLKEFIQWYEDTNGVVFQGESITPMDLQEWKQFLMEVAKTNSGKQLS 76 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK-----------ED 178 S+ + ++ FK+ N V++PK + + W ED Sbjct: 77 VSTVSTKIGRVKPYFKFLYETNRTQTNLGAMVKQPKIQNKNDAKWLDRISKNRLMRYLED 136 Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238 ++ K + + +L +GLR S+ + + +++ S++ K G + + Sbjct: 137 VELIKKNPWKNYRNLAIVNIMLQAGLRVSEVSKLKLDDIEDGFISVRDGKGGKARKIPMN 196 Query: 239 DGFMKLLAMTPIGK-----------ETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSA 286 + + + E F++ ++ FK G+ + Sbjct: 197 SDVVNSINKWKEHRQIHQAFKENQTEYLFVSQKNGPLSVVGIENIFKTIRKHTGLEELTP 256 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341 H +R G + G ++ + Y + + + +++S Sbjct: 257 HVLRHTFGHDLVQKGIPISYVAELMGHTDINTTKIYVTAGQQEK--QEAVEKLAS 309 >gi|228942745|ref|ZP_04105273.1| Integrase/recombinase [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228975855|ref|ZP_04136385.1| Integrase/recombinase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228982303|ref|ZP_04142579.1| Integrase/recombinase [Bacillus thuringiensis Bt407] gi|228777408|gb|EEM25699.1| Integrase/recombinase [Bacillus thuringiensis Bt407] gi|228783881|gb|EEM31930.1| Integrase/recombinase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228816956|gb|EEM63053.1| Integrase/recombinase [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 308 Score = 103 bits (257), Expect = 4e-20, Method: Composition-based stats. Identities = 35/295 (11%), Positives = 90/295 (30%), Gaps = 40/295 (13%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFD--------YRKITTKHIRSGVESRKHT------- 129 N+ +E+ + I+ D + + + + + T Sbjct: 11 QGKRENTIKQYETTLKEFIQWYEDTNGVVFQGESITPMDLQEWKQFLMEVAKTNSGKQLS 70 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK-----------ED 178 S+ + ++ FK+ N V++PK + + W ED Sbjct: 71 VSTVSTKIGRVKPYFKFLYETNRTQTNLGAMVKQPKIQNKNDAKWLDRISKNRLMRYLED 130 Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238 ++ K + + +L +GLR S+ + + +++ S++ K G + + Sbjct: 131 VELIKKNPWKNYRNLAIVNIMLQAGLRVSEVSKLKLDDIEDGFISVRDGKGGKARKIPMN 190 Query: 239 DGFMKLLAMTPIGK-----------ETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSA 286 + + + E F++ ++ FK G+ + Sbjct: 191 SDVVNSINKWKEHRQIHQAFKENQTEYLFVSQKNGPLSVVGIENIFKTIRKHTGLEELTP 250 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341 H +R G + G ++ + Y + + + +++S Sbjct: 251 HVLRHTFGHDLVQKGIPISYVAELMGHTDINTTKIYVTAGQQEK--QEAVEKLAS 303 >gi|157502100|ref|YP_001485199.1| integrase/recombinase [Bacillus thuringiensis] gi|87133405|gb|ABD24315.1| integrase/recombinase [Bacillus thuringiensis] Length = 314 Score = 103 bits (257), Expect = 4e-20, Method: Composition-based stats. Identities = 35/295 (11%), Positives = 90/295 (30%), Gaps = 40/295 (13%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFD--------YRKITTKHIRSGVESRKHT------- 129 N+ +E+ + I+ D + + + + + T Sbjct: 17 QGKRENTIKQYETTLKEFIQWYEDTNGVVFQGESITPMDLQEWKQFLMEVAKTNSGKQLS 76 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK-----------ED 178 S+ + ++ FK+ N V++PK + + W ED Sbjct: 77 VSTVSTKIGRVKPYFKFLYETNRTQTNLGAMVKQPKIQNKNDAKWLDRISKNRLMRYLED 136 Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238 ++ K + + +L +GLR S+ + + +++ S++ K G + + Sbjct: 137 VELIKKNPWKNYRNLAIVNIMLQAGLRVSEVSKLKLDDIEDGFISVRDGKGGKARKIPMN 196 Query: 239 DGFMKLLAMTPIGK-----------ETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSA 286 + + + E F++ ++ FK G+ + Sbjct: 197 SDVVNSINKWKEHRQIHQAFKENQTEYLFVSQKNGPLSVVGIENIFKTIRKHTGLEELTP 256 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341 H +R G + G ++ + Y + + + +++S Sbjct: 257 HVLRHTFGHDLVQKGIPISYVAELMGHTDINTTKIYVTAGQQEK--QEAVEKLAS 309 >gi|117923766|ref|YP_864383.1| tyrosine recombinase XerC subunit [Magnetococcus sp. MC-1] gi|117607522|gb|ABK42977.1| tyrosine recombinase XerC subunit [Magnetococcus sp. MC-1] Length = 335 Score = 103 bits (257), Expect = 4e-20, Method: Composition-based stats. Identities = 44/284 (15%), Positives = 88/284 (30%), Gaps = 44/284 (15%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFD--------YRKITTKHIRSGV---ESRKHTPSSA 133 L+V++ + + +++ ++ HI + + ++ Sbjct: 17 RRLSVHTEKGYRRDLEAFSAFYAEYEGEPLTPTKLAQLDGDHILAFLGRGHREGLARTTM 76 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR-----------------PWTK 176 + + ++R F + R+ V+ NP +V PK R P + Sbjct: 77 QRRMAALRAWFNYMQREGLVSGNPAAAVSSPKAPKRLPRAPSVEQTLNLLDKSTPRPLSP 136 Query: 177 EDMQQFKSFWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTI 232 E S W+ R E L +GLR S++C + ++ K G Sbjct: 137 EASDFDTSAWAVLRSLRDTALLELLYSAGLRISEACNLDRADVDLRGGELRVRHGKGGKQ 196 Query: 233 ITVELPD--------GFMKLLAMTPIGKET--FFINNDKQKMNATQFSIWFKAKATKAGV 282 V L P F +++N+ + + + + Sbjct: 197 RMVPLGRTAVAAIEAWLQARTRAKPQLDPMGPIFTGQLGKRLNSREGQRLLEKWRARLDL 256 Query: 283 NKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 +S H +R AT AGA + G ++ + YT Sbjct: 257 PESVTPHALRHAFATHLLQAGADLRAIQEMMGHASLSATQKYTH 300 >gi|313681427|ref|YP_004059165.1| integrase family protein [Sulfuricurvum kujiense DSM 16994] gi|313154287|gb|ADR32965.1| integrase family protein [Sulfuricurvum kujiense DSM 16994] Length = 282 Score = 103 bits (257), Expect = 4e-20, Method: Composition-based stats. Identities = 44/269 (16%), Positives = 87/269 (32%), Gaps = 21/269 (7%) Query: 76 SEYRKSAHW-------GSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIRSGVES 125 YR+ + + + S+ D+++ + I +R + S Sbjct: 5 ELYRQKEAFLKYLDTIRGYSPLTIRSYNDAIDEMLTFAEMDASSNLLSINLMPLRLKISS 64 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 K +A L+++R K+ Q E K +P T E + + Sbjct: 65 LKAKSIAAK--LSAIRSFVKYLRSQG--KTVELRGDESIKTPKTLPKPITHEQI--LHAL 118 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245 Q LA L GLR S+ + + I K + + D ++ Sbjct: 119 QYAEPQAALAITLLYTMGLRISELTHLRLSDISEGWSRIH-GKGSKERDIPMMDNIRTMV 177 Query: 246 AMTP---IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGA 302 +E F +K++ K G+ + H +R AT + GA Sbjct: 178 QEYQKINPSREYVFELK-GEKLSENSLRYTIIKAFAKVGLKVTPHQLRHTYATELLNNGA 236 Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRL 331 ++ G ++ + YTK + +++ Sbjct: 237 RIADVSELLGHASMATTQIYTKLGNALKM 265 >gi|251772728|gb|EES53290.1| phage integrase family protein [Leptospirillum ferrodiazotrophum] Length = 326 Score = 103 bits (257), Expect = 4e-20, Method: Composition-based stats. Identities = 48/310 (15%), Positives = 104/310 (33%), Gaps = 24/310 (7%) Query: 26 RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWG 85 RKG + R ++ + + + +++ + TTL + Y + Sbjct: 18 RKGFPPQSR--TFSAKAEADSWAAVIESEMARGVFVSRTEAENTTLSEALDRYEREISLL 75 Query: 86 SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH--TPSSAIQFLTSMRVL 143 Y+ I + + + ++R + S+ + + + + Sbjct: 76 KKGAAVETVRIRYWKNY--PLSARPLAGIRSSDLAAWRDARLSEVSSSTVNREMNLISHV 133 Query: 144 FKWAV-RQEYVA-INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS---EGSQPRLAFEF 198 F + + +NP + RP+ R ++++ G R A E Sbjct: 134 FTICIKEWGMASLVNPVSQIRRPRNPESRERRLQFGELEKILEHTDSQILGPVVRFALE- 192 Query: 199 LLYSGLRCSDSCRAGVQHLQNN--IFSIKTQKTGTIITVELPDGFMKLLAMTPIG-KETF 255 +G+R + H+ + I KTG TV L +++L P + Sbjct: 193 ---TGMRRGEIASMRWDHVDVKKRVLLIPETKTGKSRTVPLTTEALRILNDLPRRLDGSI 249 Query: 256 FINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWK 314 + D M F+ +AG+ + + H +R + + + G ++ A G K Sbjct: 250 WGMTDPHTMTRA-----FERACKRAGIEDLTFHDLRHEATSRFFEKGLNPMQVAAITGHK 304 Query: 315 TVDQAETYTK 324 T+ + YT Sbjct: 305 TLQMLKRYTH 314 >gi|228956754|ref|ZP_04118540.1| Prophage LambdaBa04, site-specific recombinase, phage integrase [Bacillus thuringiensis serovar pakistani str. T13001] gi|228802942|gb|EEM49774.1| Prophage LambdaBa04, site-specific recombinase, phage integrase [Bacillus thuringiensis serovar pakistani str. T13001] Length = 374 Score = 103 bits (257), Expect = 4e-20, Method: Composition-based stats. Identities = 46/292 (15%), Positives = 97/292 (33%), Gaps = 37/292 (12%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH 128 TL + E+ ++ + ++ I++ + +II G + + H + V+S Sbjct: 64 TLSEYLQEWLENTAKQRVRDSTFINYRRAVNSRIIPVVGSHKLKDLKPLHGQRFVKSLID 123 Query: 129 ---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 +P ++ + AV+ E + NP VE P+ + W+ E+ + F ++ Sbjct: 124 EELSPKYIEYIFIVLKGALEDAVKWELLYKNPFEHVEIPRPRKVVNNTWSIEETKIFLTY 183 Query: 186 WSEGSQPRLA-FEFLLYSGLRCSDSCRAGVQHLQ--NN-------------IFSIKTQKT 229 + F L +G+R + +++ + F KT Sbjct: 184 AKFDNPIYYHLFLLALNTGMRRGELLGLKWKNVDLIDGKVSVTETLIYDELGFRFTEPKT 243 Query: 230 -GTIITVELPDGFMKLLAMTPI--------------GKETFFINNDKQKMNATQFSIWFK 274 G+ + + K L + F D + + + F+ Sbjct: 244 SGSKRLISIDQSLCKELKSYKAKQNEFKLAIGKAYEDNDLVFSREDGKPIYPRTLTTVFE 303 Query: 275 AKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324 A V K H +R AT+ G + G ++ +TY+ Sbjct: 304 RFIKTAQVPKIRFHDLRHTHATLLLKLGINPKVVSERLGHNSIKTTLDTYSH 355 >gi|167767979|ref|ZP_02440032.1| hypothetical protein CLOSS21_02522 [Clostridium sp. SS2/1] gi|167710308|gb|EDS20887.1| hypothetical protein CLOSS21_02522 [Clostridium sp. SS2/1] Length = 372 Score = 103 bits (257), Expect = 4e-20, Method: Composition-based stats. Identities = 42/300 (14%), Positives = 96/300 (32%), Gaps = 13/300 (4%) Query: 42 TFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ 101 F+ + ++ K +L L + + + + + + + Q Sbjct: 64 QFLENVLVEEFQDVQVKKECTDVAKYNDSLGKLKDMFLATLIVENKSNRTIEQYNLHLTQ 123 Query: 102 IIRKSGDFDYRKITTKHIRSGVESRKHTPS----SAIQFLTSMRVLFKWAVRQEYVAINP 157 + D + I IRS + + K S +++ F W V +EY+ +P Sbjct: 124 FVNYFTGKDAKDIDATGIRSFLYAYKKNRGISNLSLNNKRSAISSFFSWLVDEEYIDKDP 183 Query: 158 CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL 217 +++ K + + +T ++M++ + ++ + R E L +G R S+ + + Sbjct: 184 TRKIKKIKVTKKKKKAFTADEMERMRIACTD-IRDRALIEMLACTGCRVSELSNISLNDV 242 Query: 218 QNNIFSIK-TQKTGTIITVELPDG----FMKLLAMTPIGKETFFINND--KQKMNATQFS 270 ++ K TV + D + L F++ ++ Sbjct: 243 DFLRKKVRIVGKGDKERTVFISDTAMIYLNRYLETRQDNNIALFVSKRFPYDRLRKDGIE 302 Query: 271 IWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRI 329 + V H R+ T G + G ++ Y +DR Sbjct: 303 RVVRDLGRMCNVYAHPHKFRRTLCTNLIMRGMPLQNVAILMGHADINMTANVYYDASDRA 362 >gi|260219998|emb|CBA27096.1| Tyrosine recombinase xerC 1 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 321 Score = 103 bits (257), Expect = 4e-20, Method: Composition-based stats. Identities = 49/293 (16%), Positives = 89/293 (30%), Gaps = 40/293 (13%) Query: 72 KWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVESR-- 126 L+ +Y + LA + + ++ ++ R + HIR V Sbjct: 6 SALVEKYLEFVRVEKRLAARTVELYSLDLGRLSEQATRAGVTMRDVRNHHIRRWVAQMHS 65 Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + L+ R + W R+ V+ NP V PK + +D QF F Sbjct: 66 AGRSGRGIALILSGWRGFYAWLGREGLVSSNPVQDVRSPKAPKPLPKALAVDDAVQFADF 125 Query: 186 WS-----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKT------QKTGTI 232 S ++ E L SGLR + V ++ ++ K Sbjct: 126 ESYDNAWLEARDAAIVELLYGSGLRVGELVGLDVVAGKDAKGWIDMQAAEAHVLGKGSKR 185 Query: 233 ITVELPDGFMKLLA-----MTPIGK--------------ETFFINNDKQKMNATQFSIWF 273 +V + M+ L P G F + ++ A Sbjct: 186 RSVPVGATAMQALQRWLELRGPSGTATAAPVDAAAAHAASALFTGRNGTRLTAQSVWQRL 245 Query: 274 KAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 K ++ AG+N H +R A+ + + G + + YT+ Sbjct: 246 KRRSQLAGLNVPVHPHMLRHSFASHVLQSSGDLRGVQELLGHANITTTQVYTR 298 >gi|24373596|ref|NP_717639.1| phage integrase family site specific recombinase [Shewanella oneidensis MR-1] gi|24347924|gb|AAN55083.1|AE015645_9 site-specific recombinase, phage integrase family [Shewanella oneidensis MR-1] Length = 287 Score = 103 bits (257), Expect = 4e-20, Method: Composition-based stats. Identities = 43/269 (15%), Positives = 91/269 (33%), Gaps = 25/269 (9%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE----SRK 127 L+ ++ + +R ++ Q+ + + IT + + + R Sbjct: 2 SSLLQQFHDEISLRGYSARTRNAYLYAITQL-QHYANQPLDNITDEQLTAYFRYLNLERH 60 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 H+ ++ L + ++ +++++ + + PKR + + + +D+ + Sbjct: 61 HSRATLKLQLNGIHFFYEHVLKRDF-----TIQLSLPKRPHKLPQLLSCQDIAALL-YHC 114 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLL 245 + + R GLR S+ V + +K K V L + LL Sbjct: 115 QNLKQRAMLALCYGCGLRVSELTHIKVADIDGQRQLLKVCQGKGACDRWVILSPTLLILL 174 Query: 246 AMT-----PIGKETFFINNDK---QKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSAT 295 P+ E F + ++ + F A A + S H +R AT Sbjct: 175 RQYWQAYHPV--EWLFASTYHDVVYPLHESTFRKALAKAARLASITKPCSPHSLRHAYAT 232 Query: 296 ISADAGATAHELMATYGWKTVDQAETYTK 324 AG H+L A G ++ E Y Sbjct: 233 HQLQAGMPLHQLQAQLGHHSIKSTERYLH 261 >gi|123441204|ref|YP_001005191.1| integrase [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122088165|emb|CAL10953.1| integrase [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 332 Score = 103 bits (257), Expect = 4e-20, Method: Composition-based stats. Identities = 56/304 (18%), Positives = 113/304 (37%), Gaps = 23/304 (7%) Query: 29 HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLA 88 G+RIR + + + + +E+++ P L LI + W Sbjct: 21 EGKRIR-RKFDKKAEAQTFERYVLANFHNKEWVDKP-ADKRVLSELIELW-----WKYQG 73 Query: 89 VNSRISFESYFD--QIIRKSGDFDYRKITTKH---IRSGVESRKHTPSSAIQFLTSMRVL 143 N++ + +I R+ + IT K RS S +P++ + L+ + + Sbjct: 74 QNTKHGEKEKLRLYKIDREMSNPRIYMITRKFLMEYRSQRLSSGLSPATVNRDLSVLSGM 133 Query: 144 FKWAVR-QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS 202 F + +E+ + NP +V + + K + +++++ S + G Q R+A L + Sbjct: 134 FSTLIEAEEFHSENPICAVSKLRLKNSEMSFLSEDEIVDLLSK-ATGDQRRIAL-LCLST 191 Query: 203 GLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ 262 G R ++ +H+ N + K G I ++ + D + ++ G+ N D Sbjct: 192 GARWGEAKNLRGEHIVGNKVTFVETKNGKIRSIPISDEMLTIIKTKKSGQ---LFNAD-- 246 Query: 263 KMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 +F K +++H +R AT G L G + Q Y Sbjct: 247 ---YNEFRSLLKELKPDLPKGQASHALRHTFATHFMMNGGNIITLQRILGHSNIQQTMNY 303 Query: 323 TKGA 326 A Sbjct: 304 AHFA 307 >gi|325918374|ref|ZP_08180505.1| tyrosine recombinase XerC subunit [Xanthomonas vesicatoria ATCC 35937] gi|325535397|gb|EGD07262.1| tyrosine recombinase XerC subunit [Xanthomonas vesicatoria ATCC 35937] Length = 302 Score = 103 bits (257), Expect = 4e-20, Method: Composition-based stats. Identities = 38/256 (14%), Positives = 79/256 (30%), Gaps = 20/256 (7%) Query: 89 VNSRISFESYFDQIIRKSGD------FDYRKITTKHIRSGV---ESRKHTPSSAIQFLTS 139 R + + D D ++ + +R V R + S + L++ Sbjct: 23 DAYRRDLAALLSWAAEQKNDAGVAVALDVAQLDSAQLRQFVAAEHRRGLSAKSLQRRLSA 82 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---WSEGSQPRLAF 196 R + W ++ + +P ++ PK + + ++ + G + R Sbjct: 83 CRSYYAWLLKHGRITASPAAALRAPKAPRKLPQVLDADEAVRLVEVPTDAPLGLRDRALL 142 Query: 197 EFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKE-- 253 E SGLR S+ C + L + + K G V + + L Sbjct: 143 ELFYSSGLRLSELCALRWRDLDLASGLVMVLGKGGKQRLVPVGSHAIAALREWQRDSGGR 202 Query: 254 ---TFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELM 308 F ++ I K A + G+ + H +R A+ ++ + Sbjct: 203 AETHVFPGRAGGAISQRAVQIRIKQLAVRQGMFKDVHPHMLRHSFASHILESSGDLRGVQ 262 Query: 309 ATYGWKTVDQAETYTK 324 G + + YT Sbjct: 263 ELLGHSDIATTQIYTH 278 >gi|315223453|ref|ZP_07865310.1| tyrosine recombinase XerD [Capnocytophaga ochracea F0287] gi|314946626|gb|EFS98617.1| tyrosine recombinase XerD [Capnocytophaga ochracea F0287] Length = 307 Score = 103 bits (257), Expect = 4e-20, Method: Composition-based stats. Identities = 39/253 (15%), Positives = 94/253 (37%), Gaps = 22/253 (8%) Query: 93 ISFESYFDQIIRKSG-DFDYRKITTKHIRSGVESRKH---TPSSAIQFLTSMRVLFKWAV 148 SFE + + + G D + + I+ + + S + L++++ + + Sbjct: 29 RSFEKFIKSLYEEKGEDCCLEQADQEDIKKWIIHLSDETISFRSINRKLSALKTYYNFLK 88 Query: 149 RQEYVAINPC-LSVERPKRKTEGIRPWTKEDMQQFKSFWS-----EGSQPRLAFEFLLYS 202 + + + I+P + K + + P+++ ++++ SF+S + + R E L + Sbjct: 89 KTKQIEISPFEKGIFLLKTEKKHKLPFSEAEIEKVLSFFSSKDSFDEVRNRAVIETLYAT 148 Query: 203 GLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPI---------GK 252 G+R S+ V + IK K + + L + + Sbjct: 149 GIRRSELSGLKVSDVDFEQKQIKVLGKGDKERYIPIIPELENTLKEYLVLREEVKNEKSQ 208 Query: 253 ETFFINNDKQKMNATQFSIWFKAK--ATKAGVNKSAHGVRKFSATISADAGATAHELMAT 310 + F+ + +K+ +T + + S H +R A+ D GA + + Sbjct: 209 DYLFLVKNGKKIYSTLVYRIINSYFSVVTTKKDVSPHVLRHSFASHLLDNGADLYTVKEL 268 Query: 311 YGWKTVDQAETYT 323 G ++ + YT Sbjct: 269 LGHSSLASTQVYT 281 >gi|220930678|ref|YP_002507587.1| integrase family protein [Clostridium cellulolyticum H10] gi|220001006|gb|ACL77607.1| integrase family protein [Clostridium cellulolyticum H10] Length = 423 Score = 103 bits (257), Expect = 4e-20, Method: Composition-based stats. Identities = 59/376 (15%), Positives = 119/376 (31%), Gaps = 42/376 (11%) Query: 6 RLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65 R P + + ++GK K + I + A M + K YI+ Sbjct: 35 RYPIGLKETIDKNGKPCC---KTVYKSIYGKKKTGPGGVMAEMRNALAALGKGTYIDPSD 91 Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK-SGDFDYRKITTKHIRSGVE 124 K TL E+ ++ L N+R+ +E+ ++ R D + ++ + I+ Sbjct: 92 K---TLIVWCQEWYETYKEPKLKTNTRLKYETSITRLKRYSIADMQLKNLSLELIQKDYN 148 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQ----EYVAINPCLSVERPKRKTEG-----IRPWT 175 S + + + L A+ + + NP V P+ + + Sbjct: 149 RMAKDGLS-EETIKATHSLVNGALEKAEALNKINKNPARHVTIPRTDEDDAEESNTKALN 207 Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT------ 229 + F S+ + F+L +GLR ++ + IK KT Sbjct: 208 DTQLDAFLYQIGRRSKYFMYAFFMLNTGLRPGEALALTRSDIDFTTNKIKVTKTYIEKLK 267 Query: 230 ---------GTIITVELPDG----FMKLLAMTPIGKET--FFINNDKQKMNATQFSIWFK 274 + V +P + + P + T F ++ + FK Sbjct: 268 KVQNSTKTASSRRKVPIPSEMISLLKEYMLQQPKKEPTDPLFQTATGKRPSQGYLRKRFK 327 Query: 275 AKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLG 332 AG + H +R A+ + G K V + Y D + Sbjct: 328 YAGASAGCEWVNLHTMRHTFASRLFKKKVDIKVISELLGHKDVSTTYDIYVHFID--NIV 385 Query: 333 IKNSRRISSVVDSDDP 348 ++ + ++S + + P Sbjct: 386 EESVQVLNSDIPENLP 401 >gi|303240629|ref|ZP_07327144.1| integrase family protein [Acetivibrio cellulolyticus CD2] gi|302591866|gb|EFL61599.1| integrase family protein [Acetivibrio cellulolyticus CD2] Length = 279 Score = 103 bits (257), Expect = 4e-20, Method: Composition-based stats. Identities = 37/266 (13%), Positives = 92/266 (34%), Gaps = 18/266 (6%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE----SRKHT 129 L + + + ++I++ + + + + + I++ + RK + Sbjct: 4 LREQMKYDMDLKGFSEKTKIAYLKHVELFAKYF-KKSPELLGEEEIKAYLHHQLIERKMS 62 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 S Q ++++ L++ +++E+ + + R KR+ + + ++E++++ + + Sbjct: 63 RSYNTQAYSALKFLYETTLKREWKSY----KIPRCKREKKLPKVLSREEVKRIFNVTTNP 118 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPD----GFMKL 244 R SGLR S+ V + G + ++ Sbjct: 119 KH-RAILMTTYSSGLRVSEVVNLKVNDIDGKRLQLFVQGGKGQKDRYTVLSRKNLELLRD 177 Query: 245 LAMTPIGKETFFINND-KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAG 301 K F D + + F+ KAG+ K S H +R AT ++G Sbjct: 178 YWKLYHPKTWLFPGQDINEPLCVRTVQKVFENSVRKAGITKDVSVHTLRHSFATHLLESG 237 Query: 302 ATAHELMATYGWKTVDQAETYTKGAD 327 + G ++ Y + Sbjct: 238 VDTFYIQKLLGHSSLKTTSIYIHVGN 263 >gi|256845130|ref|ZP_05550588.1| integrase/recombinase [Fusobacterium sp. 3_1_36A2] gi|256718689|gb|EEU32244.1| integrase/recombinase [Fusobacterium sp. 3_1_36A2] Length = 328 Score = 103 bits (257), Expect = 4e-20, Method: Composition-based stats. Identities = 42/295 (14%), Positives = 97/295 (32%), Gaps = 44/295 (14%) Query: 88 AVNSRISFESYFDQIIR--KSGDFDY---------RKITTKHIRSGV----ESRKHTPSS 132 + + + + + G+ D+ + I + + + + E RK +S Sbjct: 33 SEKTVKDYMFHLKDFLHFVYDGENDFSISEVIPLMQDIEKEDVEAYIVHLFEDRKLKKTS 92 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW--TKEDMQQFKSFWSEGS 190 L++++ L+K NP ++ K + +D+++ + S Sbjct: 93 VNTILSALKSLYKELESNGL--KNPVKYIKLFKVNRNIENVLKVSIDDIRKIIGLYKIDS 150 Query: 191 QPR----LAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVELPDGFM 242 + + L Y+G+R + +H F + K+G + + + Sbjct: 151 EKKYRNITILYTLFYTGMRSKELLTLKFKHYLKREDEYFFKLIQTKSGKDVYKPIHKSLV 210 Query: 243 K-------------LLAMTPIGKETFFINN--DKQKMNATQFSIWFKAKATKAGVNKSAH 287 K L + + ++ F+ + D ++ + + G + S H Sbjct: 211 KKLEEYKKYLISMYSLDLKDLDEKYIFLTSVLDNTPLSYRSLNAIIQDMGKMIGKDISPH 270 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342 +R AT + +GA E+ G E Y R L K ++ + Sbjct: 271 NIRHAIATELSLSGADILEIRDFLGHSDTKVTEVYINA--RSILEKKVLEKLPEI 323 >gi|253577741|ref|ZP_04855025.1| tyrosine recombinase xerC [Paenibacillus sp. oral taxon 786 str. D14] gi|251842867|gb|EES70932.1| tyrosine recombinase xerC [Paenibacillus sp. oral taxon 786 str. D14] Length = 321 Score = 103 bits (257), Expect = 4e-20, Method: Composition-based stats. Identities = 48/321 (14%), Positives = 110/321 (34%), Gaps = 44/321 (13%) Query: 46 AYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK 105 Y+SA+ P + + ++ ++ + A N+R ++ + + Sbjct: 4 NYLSAVAQQFPFHLSVTQDYQDEQIIQMFLTA-------CAKAPNTRRNYFRALEHFRQF 56 Query: 106 SGDFDYRKITTKHIRSGV----------ESRKHTPSSAIQFLTSMRVLFKWAVRQ--EYV 153 +R +T + I + + P+S F+ ++ +KW + Sbjct: 57 LSGMRFRDVTWREIEAYKIYLTKGFYRDGQKPLAPASVAAFIAPLKSFYKWGSDSSIGFF 116 Query: 154 AINPCLSVERPKRK-TEGIRPWTKEDM-QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCR 211 NP +V P T T+ ++ + ++ + + L L+ GLR S+ C Sbjct: 117 DHNPAQNVRIPAIAVTSRRHYLTRNEVGKLLEALRRQSLRNYLIGLSLVLLGLRVSELCG 176 Query: 212 AGVQHLQNN------IFSIKTQKTGTIITVELPDGF----MKLLAMTPIGKET-----FF 256 + + ++ K G V++P + G E F Sbjct: 177 IKWKDFHADMLETSIWLTVSHAKRGKTREVKIPRELWNMYQEHARRLAKGHEPDPELKLF 236 Query: 257 INNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWK 314 + Q K +G+ K + H +R +AT++ GA+ ++ + G Sbjct: 237 ------AITPRQIERIIKQAGIASGIQKQPTPHWLRHTNATLALLQGASLQQVQESLGHS 290 Query: 315 TVDQAETYTKGADRIRLGIKN 335 ++ + Y ++I+ + Sbjct: 291 HINTTQRYLHTVEQIKKAAPD 311 >gi|229593315|ref|YP_002875434.1| site-specific tyrosine recombinase XerC [Pseudomonas fluorescens SBW25] gi|259710435|sp|C3K438|XERC_PSEFS RecName: Full=Tyrosine recombinase xerC gi|229365181|emb|CAY53449.1| tyrosine recombinase [Pseudomonas fluorescens SBW25] Length = 299 Score = 103 bits (257), Expect = 4e-20, Method: Composition-based stats. Identities = 35/259 (13%), Positives = 88/259 (33%), Gaps = 19/259 (7%) Query: 85 GSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFLT 138 ++ ++ ++ +++ K ++ + + +RS + + S + L+ Sbjct: 16 RQVSPHTLEAYRRDLNKVLAYCEKQQISSWKALDIQSLRSLIARLHQAGQSSRSLSRLLS 75 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRL 194 ++R L+ + R+ +P + PK + + + Q E + + Sbjct: 76 AVRGLYHYLNREGLCDHDPANGLSPPKGERRLPKTLDTDRALQLLDGAVEDDFLAHRDQA 135 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-ELPDGFMKLLAM------ 247 E SGLR S+ + L ++ G+ V + + L + Sbjct: 136 ILELFYSSGLRLSELTGLNLDQLDLADGLVQVLGKGSKTRVLPVGRKAREALQLWLPLRL 195 Query: 248 -TPIGKETFFINNDKQKMNATQFSIWFKAK-ATKAGVNKSAHGVRKFSATISADAGATAH 305 T + F++ +++ + KA + G N H +R A+ ++ Sbjct: 196 LTNPADDAVFVSQQGRRLGPRAIQVRVKAAGERELGQNLHPHMLRHSFASHMLESSQDLR 255 Query: 306 ELMATYGWKTVDQAETYTK 324 + G + + YT Sbjct: 256 AVQELLGHSDIKTTQIYTH 274 >gi|323973234|gb|EGB68426.1| phage integrase [Escherichia coli TA007] Length = 331 Score = 103 bits (257), Expect = 4e-20, Method: Composition-based stats. Identities = 43/235 (18%), Positives = 87/235 (37%), Gaps = 14/235 (5%) Query: 94 SFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFLTSMRVLFKWAVRQ 150 ++ + +++IR+ GD ++T K + + PSS + L ++ +F + Sbjct: 81 TYRTRLEKVIREMGDPRASQMTRKFMIEYRSDKLQAGLMPSSINRDLCALSAMFSLLIDA 140 Query: 151 E-YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDS 209 E Y NP + + K + + + +++ + EG R+A L +G R ++ Sbjct: 141 EVYHNENPVRGIRKLKVQNTEMAFLSDDEIDRLLKRL-EGDARRIAI-LCLSTGARWKEA 198 Query: 210 CRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF 269 +H+ N + K G +V + D + L+ G +++ F Sbjct: 199 STLRGEHIVGNRVTFFNTKNGKSRSVPVADSVVPLIKTRRTGLLY--------QVDYLSF 250 Query: 270 SIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 + ++ H +R AT G L G T+ Q TY Sbjct: 251 REILQEVKPDLPKGQATHVMRHTFATHFMMNGGNIVTLQRILGHATIQQTMTYAH 305 >gi|225164361|ref|ZP_03726626.1| integrase family protein [Opitutaceae bacterium TAV2] gi|224801041|gb|EEG19372.1| integrase family protein [Opitutaceae bacterium TAV2] Length = 329 Score = 103 bits (257), Expect = 4e-20, Method: Composition-based stats. Identities = 44/249 (17%), Positives = 86/249 (34%), Gaps = 24/249 (9%) Query: 100 DQIIRKSGDFDYRKITTKHIRSGV--ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINP 157 D + K+T + +R V R+ + ++ +R +K+ +R V+ NP Sbjct: 64 DAANESAASLAPDKLTPRDLRDFVIEGQRRFDRRTLHNHVSGLRSFYKYWLRHGRVSRNP 123 Query: 158 CLSVERPKRKTEGIRPWTKEDMQQFKSFWSE------------GSQPRLAFEFLLYSGLR 205 + + PK + + T++ M+ S + RLA E L GLR Sbjct: 124 LVGLALPKLEKRLPKFLTEQQMKLLLSGPQRLLDNVADITPFTAWRDRLAMELLYGGGLR 183 Query: 206 CSDSCRAGVQHLQNNIFSIKTQKTGTI--------ITVELPDGFMKLLAMTPIGKETFFI 257 S+ + + G + + + + A + Sbjct: 184 VSELTALDYGQIDFTSGVARVLGKGRKERLCPLGKVALAVLVKWKNEYARDTSPAAPVLV 243 Query: 258 NNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKT 315 + ++M Q + K AG+ + S H +R AT +AGA + G + Sbjct: 244 TPEHERMPVRQVQLMLKRYLALAGLPTDLSPHKLRHSYATHLLNAGADLRLVQELLGHAS 303 Query: 316 VDQAETYTK 324 ++ + YT Sbjct: 304 LNTTQIYTH 312 >gi|27375301|ref|NP_766830.1| site-specific integrase/recombinase [Bradyrhizobium japonicum USDA 110] gi|34222843|sp|Q89XW5|XERD_BRAJA RecName: Full=Tyrosine recombinase xerD gi|27348437|dbj|BAC45455.1| xerD [Bradyrhizobium japonicum USDA 110] Length = 318 Score = 103 bits (257), Expect = 4e-20, Method: Composition-based stats. Identities = 42/279 (15%), Positives = 87/279 (31%), Gaps = 38/279 (13%) Query: 89 VNSRISFESYFDQIIRKSGD-----FDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVL 143 N+ ++ G D T + + +++R +S + L++MR L Sbjct: 26 PNTLDAYRRDLTDFSEFLGRVGHSFADAETQTLRDYLADLDTRGFKSTSVARRLSAMRHL 85 Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA-------- 195 +++ + + +P + PKR + + D+ + E S+ A Sbjct: 86 YRFLLNERIRGDDPAAILSGPKRGRGLPKVLSIADVDRMLRRARELSEAEDASPSKRLRA 145 Query: 196 ------FEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDG-------F 241 E L +GLR S+ + + + K V L + + Sbjct: 146 LRLYCLLEVLYATGLRVSELVALPRTAAKRDARMIVVRGKGNKERLVPLNEASRQAMADY 205 Query: 242 MKLLAMTPIGKET------FFINNDK--QKMNATQFSIWFKAKATKAGVNK---SAHGVR 290 + K+T + + + F+ K A +G+ S H +R Sbjct: 206 LAATEAAKSDKKTGVAASKWLFPSFGESGHLTRQHFARDLKELAVASGLQARLVSPHVLR 265 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 A+ GA + G + + YT + Sbjct: 266 HAFASHLLHNGADLRIVQTLLGHTDISTTQIYTHVVEER 304 >gi|90425347|ref|YP_533717.1| phage integrase [Rhodopseudomonas palustris BisB18] gi|90107361|gb|ABD89398.1| phage integrase [Rhodopseudomonas palustris BisB18] Length = 400 Score = 103 bits (257), Expect = 4e-20, Method: Composition-based stats. Identities = 67/360 (18%), Positives = 125/360 (34%), Gaps = 32/360 (8%) Query: 10 FVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALT---------GSTPKREY 60 V ++R + +R +R PH S + P G P E Sbjct: 33 GVRRQRD-QATYVLKYRLFGRQRFVTIGPHGSPWTPELARKEAKRLLGLVAIGKDPADEK 91 Query: 61 INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120 + + TL+ + +Y ++A L + E Y + +IT +HI Sbjct: 92 AKARLQAADTLRAIADQYLRNAK-QRLKPRTYSEIERYLLVSWKPLHPVSVFQITRRHIS 150 Query: 121 SGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEY-VAINPCLSVERPKRKTEGIRPWTKE 177 + + H SA + T++ +F WA+R+ +A NP L RP + R T+ Sbjct: 151 ARIADFESAHGAVSAARARTALSSMFNWAIREGLEIAANPVLGTNRPAQPGSRERVLTET 210 Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQKTGTIITV 235 ++ + R+ LL + R + L ++++ + +T Sbjct: 211 ELSAIWHACGDDDYGRIVRLLLL-TAQRRDEVGSMQWAELDTFSGLWTLPSARTKNHREH 269 Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNAT---QFSIWFKAKATKAG----------V 282 LP L + P F+ D + + FS W K+KA Sbjct: 270 SLPFVPAALALLPPRRDGLDFLFGDGPRRSGDPHRGFSGWSKSKAALDARIAEALGNPLP 329 Query: 283 NKSAHGVRKFSATISADA-GATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341 + + H +R+ ++T+ AD G H + A + +A +R R + + Sbjct: 330 HWTVHDLRRSASTVMADRLGVLPHIVEAILNHVSGHRAGV-AGVYNRARYATEMREALER 388 >gi|34581137|ref|ZP_00142617.1| integrase/recombinase [Rickettsia sibirica 246] gi|28262522|gb|EAA26026.1| integrase/recombinase [Rickettsia sibirica 246] Length = 305 Score = 103 bits (257), Expect = 4e-20, Method: Composition-based stats. Identities = 48/284 (16%), Positives = 106/284 (37%), Gaps = 28/284 (9%) Query: 69 TTLKWLISEYRKSAHWG-SLAVNSRISFESYFDQIIR-----KSGDFDYRKITTKHIRSG 122 T+++ LI++++K + + ++ IS+ + + S I T IR Sbjct: 4 TSIQALINKWQKYLVLQRNYSNHTVISYNNDLKHFLEFMNYYNSELVTINHIKTADIRLI 63 Query: 123 VESRKH------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176 T SS + L++++ +++ + + + S++ PK+ + ++ Sbjct: 64 RSWLAKRNCDNFTASSISRGLSAVKNFYRFLEKTTQLNSHIIFSIKSPKKTKLLPKALSE 123 Query: 177 ED-------MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229 +D ++++ + + + + SGLR S++ HLQN F K Sbjct: 124 DDVVISLEHIEEYGNVKWVELRNKALLVLIYASGLRISEALSITKLHLQNLEFIRIIGKG 183 Query: 230 GTIITVELPD-------GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282 + ++++L E F +K+ F+ G+ Sbjct: 184 SKERIIPWLPIAKNLITQYLEILPYKLGDNEPIFRGKQGKKLQPPVFNRELIKLKHFYGL 243 Query: 283 --NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 + +AH R A+ + GA L G K++ + YTK Sbjct: 244 PQHLTAHSFRHSFASHLLEHGADLRSLQELLGHKSLSTTQNYTK 287 >gi|213692031|ref|YP_002322617.1| phage integrase family protein [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213523492|gb|ACJ52239.1| phage integrase family protein [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320458143|dbj|BAJ68764.1| putative phage integrase [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 391 Score = 103 bits (257), Expect = 4e-20, Method: Composition-based stats. Identities = 59/345 (17%), Positives = 105/345 (30%), Gaps = 37/345 (10%) Query: 11 VTKERTRHGKIIYY--FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68 VT+ +T G+ Y +RK G + + + P Sbjct: 4 VTRYKTSKGENRYRVRYRKPDGTQTDKRGFRRKIDAENWAAEHVTIAKATNSYVDPEDGK 63 Query: 69 TTLKWLISEYRKSAHWGSLAVNSR-ISFESYFDQIIRKSGDFDYRKITTKHIRSGVES-- 125 + L ++ K W +R + E++ + D IT +++ + Sbjct: 64 RRVGDLYEQWLKE-KWPFWKETTRVNATEAWRLYCEERWADRRIGTITRAEVQAWISDII 122 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP--WTKEDMQQFK 183 S + +M + + AVR + + NPC +VE PK R T + F Sbjct: 123 ASAGAPSVRRPYQTMLGICRMAVRDKLILDNPCENVELPKLPRRKSRRVYLTISRLLAFA 182 Query: 184 SFWSEGSQ---PRLAFEFLL-YSGLRCSDSCRAGVQHLQNNIFSIKTQ------------ 227 S G R A L + GLR ++ + L + Sbjct: 183 DECSRGKHLGAERRALVLTLGFCGLRWGEAAALKARDLDFGRGVLHVGGNLVYVGARWVE 242 Query: 228 ---KTGTIITVELP---DGFMKLLAMTPIGKETFFINNDKQKMNATQFSI---WFKAKAT 278 K V +P +K + E F + + + W+ Sbjct: 243 GTPKNSEERDVPMPLIVMEALKPMCGEREPDERVFRDLRGGPIMKQSAAKTTGWWYHALV 302 Query: 279 KAGVNK----SAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319 + G K + H +R +A+++ AGA L G K Sbjct: 303 RLGWPKEEWPTPHDLRHTAASLAVHAGANVKALQRMLGHKNASMT 347 >gi|325679322|ref|ZP_08158907.1| phage integrase, N-terminal SAM-like domain protein [Ruminococcus albus 8] gi|324108919|gb|EGC03150.1| phage integrase, N-terminal SAM-like domain protein [Ruminococcus albus 8] Length = 336 Score = 103 bits (257), Expect = 4e-20, Method: Composition-based stats. Identities = 38/254 (14%), Positives = 90/254 (35%), Gaps = 24/254 (9%) Query: 109 FDYRKITTKHIRSGV-ESRKHTPSSAIQFLTSMRVLFKWA-VRQEYVAINPCLSVERPKR 166 R I + + + R ++ + + ++++ + + +++ ++ +P +E PK Sbjct: 73 KKIRLIDAYNYLKWLADERGNSIKTRARKTSALKQFYSYLHLKKGLISSDPIEQLELPKL 132 Query: 167 KTEGIRPWTKEDMQQFKSFWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224 + T D Q+ + + R L G+R S+ C + ++ Sbjct: 133 PKTLPKYLTLGDAQKLLAAVESANYERDYCMITLFLNCGMRLSELCGLNTDDISFENGTM 192 Query: 225 KT-QKTGTIITVELPDGFMKLLA-------MTPIGKETFFINNDKQKMNATQFSIWFKAK 276 + K V + D ++ L + F++N +++ + Sbjct: 193 RLFGKGSKERIVYMNDACVEALKAYLPRRSAVQTTDKALFLSNRNTRISRRMTQYIVEES 252 Query: 277 ATKAG---VNKSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTK-------- 324 KAG + + H +R +AT+ G L G +++ E YT Sbjct: 253 LKKAGLGNLGITTHKLRHTAATLMYQYGNVDTLVLKDILGHESLATTEIYTHLTSQNLRD 312 Query: 325 GADRIRLGIKNSRR 338 A+ L ++ R+ Sbjct: 313 AANANPLADQHIRK 326 >gi|331090722|ref|ZP_08339570.1| hypothetical protein HMPREF9477_00213 [Lachnospiraceae bacterium 2_1_46FAA] gi|330399991|gb|EGG79647.1| hypothetical protein HMPREF9477_00213 [Lachnospiraceae bacterium 2_1_46FAA] Length = 283 Score = 103 bits (257), Expect = 4e-20, Method: Composition-based stats. Identities = 36/274 (13%), Positives = 97/274 (35%), Gaps = 18/274 (6%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH---TP 130 + + ++ +L S +++Y + K ++T + +R+ + ++K Sbjct: 5 YLEQLEEAGKIRNLKERSINCYKNYVSYFL-KYQAKPPEELTCQDVRNFLLAKKEEGLKA 63 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 ++ + +S+R ++ + + ++V R + + T +++ + + Sbjct: 64 TTLNLYNSSIRFFYRNVLHILWDD----ITVPRMILEHKLPTVLTVDEIDRLLEAVDD-I 118 Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE------LPDGFMKL 244 + R F + SG+R S+ + + I + T + D + Sbjct: 119 KYRAMFATMYSSGMRVSEVIHLHYDDISRSNMQIHVRDTKNRMDRYTILSKRCLDILTQY 178 Query: 245 LAMTPIGKETFFINND-KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAG 301 + F N + + + + A + K + H +R AT + G Sbjct: 179 WFEKGRPRGILFPNKFTGNYLTVSTLEQVMRRAVSDAELPKKATPHCLRHSFATHLMEQG 238 Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335 + A G + E Y +++ +GI++ Sbjct: 239 VERQNIQALLGHRDPKSTEVYLHVSNKSLMGIQS 272 >gi|21242957|ref|NP_642539.1| phage-related integrase [Xanthomonas axonopodis pv. citri str. 306] gi|21108460|gb|AAM37075.1| phage-related integrase [Xanthomonas axonopodis pv. citri str. 306] Length = 399 Score = 103 bits (257), Expect = 4e-20, Method: Composition-based stats. Identities = 56/325 (17%), Positives = 107/325 (32%), Gaps = 37/325 (11%) Query: 45 PAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-II 103 +++ + N+ RK P T++ + + +++ ++ D+ II Sbjct: 75 QEWLAEVRKGGDPSAAKNAARKAP-TMREFCHTFMEDYSKQRNKPSTQRGYQGVIDRCII 133 Query: 104 RKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVA--INPCLSV 161 G + + + + ++ + + A + +R +F A NPC V Sbjct: 134 PIMGRMKVQDVKRPDVAALMKRLAYKQAEANRTFGVLRKMFNLAEVWGLRPDGTNPCRHV 193 Query: 162 ERPKRKTEGIRPWTKEDMQQFKSF----------WSEGSQPRLAFEFLLYSGLRCSDSCR 211 E E ++ F+ + RL FEF R S+ C Sbjct: 194 PMYPPGKETRLIVDDELVRIFRHLEHLEAEGLENYVIPLAIRLQFEFA----ARRSEICP 249 Query: 212 AGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFI----NNDKQKMN 265 + N KTG I+ + + +LL+ P + ++ N+ + M Sbjct: 250 LEWAWVDLENRRVVWPDSKTGG-ISKPMSEEAYRLLSTAPRREGCPYVLPSPNDPTRHMT 308 Query: 266 -ATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 + W + + HG+R + T A++G M G KTV Y Sbjct: 309 HGEHYGGWTRVLKAAGVPHVGTHGIRHRATTDIANSGVPTKVGMKLTGHKTVAMFMHYVH 368 Query: 325 GADR-----------IRLGIKNSRR 338 D+ RL I + R Sbjct: 369 TEDKPVRDAAELVANRRLAITGASR 393 >gi|158320082|ref|YP_001512589.1| integrase family protein [Alkaliphilus oremlandii OhILAs] gi|158140281|gb|ABW18593.1| integrase family protein [Alkaliphilus oremlandii OhILAs] Length = 369 Score = 103 bits (257), Expect = 4e-20, Method: Composition-based stats. Identities = 47/308 (15%), Positives = 105/308 (34%), Gaps = 38/308 (12%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH- 128 TL+ + + + ++A + + +++ G+ ++I HI+ V + Sbjct: 62 TLRDYMQLWLEDYAKPNVAPTTYDKYTYAANKVSEILGNMKLQQIKPIHIQQLVNKLNNS 121 Query: 129 --TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 TPS+ + + + AV+ +++ NPC++V P+ + ++++Q Sbjct: 122 DVTPSTVLSYYRVLNTAINQAVKWQFIQYNPCVAVTPPRNTKNKMMILDQDEIQILLDKS 181 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ---------------NNIFSIKTQKTGT 231 + L GLR + +++ NN +K KT T Sbjct: 182 KDHVL-YPVIVLALLCGLRRGEILGLQWENIDFFSGVIHLENNLVMANNESILKETKTST 240 Query: 232 -IITVELPDGFM-------------KLLAMTPIGKETFFIN-NDKQKMNATQFSIWFKAK 276 V++ + KLL + F D + F Sbjct: 241 GRRAVDISSNVVEVLKKVKKQKMSYKLLYGSSYHDSNFVCTWEDGRPFRPDYIPKAFAKI 300 Query: 277 ATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIK 334 A + K H +R A+I +G + G ++ +TY+ L Sbjct: 301 LVSANLPKIRFHDLRHTHASILLKSGIHPKVVQERLGHSSISITLDTYSHLV--PSLQKS 358 Query: 335 NSRRISSV 342 + +++++ Sbjct: 359 AAEKMATM 366 >gi|73666749|ref|YP_302765.1| Phage integrase, N-terminal SAM- like [Ehrlichia canis str. Jake] gi|72393890|gb|AAZ68167.1| Phage integrase, N-terminal SAM- like protein [Ehrlichia canis str. Jake] Length = 309 Score = 103 bits (257), Expect = 4e-20, Method: Composition-based stats. Identities = 37/273 (13%), Positives = 91/273 (33%), Gaps = 33/273 (12%) Query: 90 NSRISFESYFDQIIRKSGDFDYRKITT-----KHIRSGVESRKHTPSSAIQFLTSMRVLF 144 N+ S+++ + + + T ++ + + + ++ ++ +++++ + Sbjct: 23 NTYQSYKTDLLGLCEFVSKKNLLLVDTSINELQNYIRLLYEKGYKANTVLRKISAIKNFY 82 Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-----SEGSQPRLAFEFL 199 + R + +P L ++ PK + + E++ + +G + L Sbjct: 83 GFLYRDNMIESDPTLYLDAPKLSRSLPKALSFEEISRLLDVAALDGSPDGRRLNAMVNIL 142 Query: 200 LYSGLRCSDSCRAG-------VQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLAMTPIG 251 SG+R S+ ++ I+ IK K V L ++ + Sbjct: 143 YSSGIRISELVCLKFYSVLEALKDHNAEIYHIKIKGKANKERIVLLNLSAVESIKKYIEI 202 Query: 252 KETFFIN------------NDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKFSATI 296 + F N + + K A AG++ S H +R AT Sbjct: 203 YKYFVPNGFEVSQWLFPGTKFDYPITRQRVGQLLKDLAMNAGIDITKISPHKLRHSFATH 262 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRI 329 + G+ + G + + YT A+ Sbjct: 263 LLNNGSNIIFIQKMLGHANLSTTQIYTHIANEK 295 >gi|169826673|ref|YP_001696831.1| integrase-recombinase protein [Lysinibacillus sphaericus C3-41] gi|168991161|gb|ACA38701.1| integrase-recombinase protein [Lysinibacillus sphaericus C3-41] Length = 275 Score = 103 bits (257), Expect = 4e-20, Method: Composition-based stats. Identities = 46/274 (16%), Positives = 97/274 (35%), Gaps = 13/274 (4%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK--HTPSS 132 ++EY + AV + ++ ++ +R+ + +T++++R + P++ Sbjct: 1 MNEYLLCLKLENKAVATITKYKWILERFLREC-KVPLKDMTSENVREWINDFSIDKKPNT 59 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS-Q 191 ++ F++ +EY+ RP+ + + + K + S + Sbjct: 60 IALVHATLSTFFQFCFDEEYIERVIIKKRWRPQLPKSLPNYLDEYEFSRIKLISEQLSIR 119 Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT-----VELPDGFMKLLA 246 R FLL SG R S+ ++ + + + + G I +E L Sbjct: 120 DRAIILFLLTSGCRVSEMSALNIKDINMDKHTAEVVGKGNKIRTIHFSLECAIALQNYLQ 179 Query: 247 MTPIG-KETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGAT 303 KE F+N ++ K +AG+ K H R AT GA Sbjct: 180 ARTCDPKEPLFMNKFGDRLLNGGIRGVLKKVGKQAGLEKIFHPHCCRHTFATNLLARGAD 239 Query: 304 AHELMATYGWKTVDQAETYTKG-ADRIRLGIKNS 336 + G ++ Y + ++ RL +N Sbjct: 240 LQFIADEMGHADLNTTRIYAQIPSEDKRLKYQNI 273 >gi|67459687|ref|YP_247311.1| site-specific tyrosine recombinase XerC [Rickettsia felis URRWXCal2] gi|75535922|sp|Q4UJZ3|XERC_RICFE RecName: Full=Tyrosine recombinase xerC gi|67005220|gb|AAY62146.1| Tyrosine recombinase XerC [Rickettsia felis URRWXCal2] Length = 305 Score = 103 bits (257), Expect = 4e-20, Method: Composition-based stats. Identities = 47/284 (16%), Positives = 105/284 (36%), Gaps = 28/284 (9%) Query: 69 TTLKWLISEYRKSAHWG-SLAVNSRISFESYFDQIIR-----KSGDFDYRKITTKHIRSG 122 T+++ LI +++K + + ++ IS+ + + S I T IR Sbjct: 4 TSIQELIDKWQKYLDLQRNYSNHTVISYNNDLKHFLEFMNYYNSELVTINHIKTADIRLI 63 Query: 123 VESRKH------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176 T SS + L++++ +++ + + + S++ PK+ + ++ Sbjct: 64 RSWLAKRNCDNFTTSSISRGLSAVKNFYRFLEKTTQLNSHIIFSIKSPKKTKLLPKALSE 123 Query: 177 ED-------MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229 +D ++++ + + + + SGLR S++ HLQN F K Sbjct: 124 DDVVISLEHIEEYGNVKWVELRNKALLVLIYASGLRISEALSITKLHLQNLEFIRIIGKG 183 Query: 230 GTIITVELPD-------GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282 + ++++L E F +K+ F+ G+ Sbjct: 184 SKERIIPWLPIAKNLITQYLEILPYKLGDNEPIFRGKQGKKLQPPVFNRELIKLKHFYGL 243 Query: 283 --NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 + +AH R A+ + GA + G K++ + YTK Sbjct: 244 PQHLTAHSFRHSFASHLLEHGADLRSIQELLGHKSLSTTQNYTK 287 >gi|83312747|ref|YP_423011.1| integrase [Magnetospirillum magneticum AMB-1] gi|82947588|dbj|BAE52452.1| Integrase [Magnetospirillum magneticum AMB-1] Length = 363 Score = 103 bits (257), Expect = 4e-20, Method: Composition-based stats. Identities = 55/314 (17%), Positives = 103/314 (32%), Gaps = 16/314 (5%) Query: 27 KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGS 86 + HG + T A+ +L G + +I+ + TL I Y + Sbjct: 53 RRHGFPTQSKTFDRKTDADAWARSLEGEMDRGAFIDRRPAEQMTLADAIRHYLDAVAPTH 112 Query: 87 LAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPSSAIQFLTSMRVLF 144 + + F + + + T HI + R P S + + + + Sbjct: 113 KGADVEAARLGRFLREEPDLCRYALSNLRTHHIEDYRDRRLEAVAPGSLCREINLLHAVL 172 Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP--RLAFEFLLYS 202 + R+ + NP V RPK E + ++ Q S P + L + Sbjct: 173 ESVRRRVGLVDNPVSHVRRPKVNDERDVRLSLDEEAQLLSALDATRNPWIKPFVIVALET 232 Query: 203 GLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIG-KETFFINN 259 +R + +H+ + K G TV L +K L P F Sbjct: 233 AMRRGEMLALRWEHVDLVQQTAHLPETKNGKGRTVPLSSRAVKTLEALPRSIGGAVF--- 289 Query: 260 DKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318 ++ + +AG++ H +R + + A+ G EL A G + + Sbjct: 290 ---PVSLDSLKHAWTRARDRAGLHHFHLHDLRHEATSRLAERGWNILELAAVTGHQDLQM 346 Query: 319 AETYT--KGADRIR 330 + YT + AD + Sbjct: 347 LKRYTNLRAADLAK 360 >gi|255012644|ref|ZP_05284770.1| site-specific recombinase [Bacteroides sp. 2_1_7] Length = 373 Score = 103 bits (257), Expect = 4e-20, Method: Composition-based stats. Identities = 49/267 (18%), Positives = 91/267 (34%), Gaps = 20/267 (7%) Query: 95 FESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQF-----LTSMRVLFKWAVR 149 S + + + I T ++ + + P F + V AV+ Sbjct: 111 LRSLANHLRDYMPQCLLKDIDTGFVKGFIAHLRKQPYLKSDFTIHGYYRLLNVTLNKAVK 170 Query: 150 QEYVAINPCLSV---ERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRC 206 + + NPC + E+P + T T E++++ + + AF F + GLR Sbjct: 171 KGLILSNPCSLLDTDEKPHKPTSLRTYLTLEELKRLIRTDCVCPEVKKAFLFCCFCGLRI 230 Query: 207 SDSCRAGVQHLQNN-----IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK 261 SD + +Q I +KT I + L + +K L + + Sbjct: 231 SDLTALRWEDMQKEGNDKFRLQIIQRKTKEAIYLPLSEEAIKYLPARENENDRLGLIFHL 290 Query: 262 QKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318 + K AG+ + H R AT+S G + + G K + Sbjct: 291 PSLTI--ICQVLKGWTLAAGIKNKKVTFHVSRHTFATLSLALGIDLYTVCKLLGHKNIIS 348 Query: 319 AETYTKGADRIRLGIKNSRRISSVVDS 345 + Y K D + + R + V+D+ Sbjct: 349 TQVYAKIIDASKR--QAIDRFNGVLDA 373 >gi|299136538|ref|ZP_07029721.1| integrase family protein [Acidobacterium sp. MP5ACTX8] gi|298601053|gb|EFI57208.1| integrase family protein [Acidobacterium sp. MP5ACTX8] Length = 381 Score = 103 bits (257), Expect = 4e-20, Method: Composition-based stats. Identities = 53/365 (14%), Positives = 112/365 (30%), Gaps = 42/365 (11%) Query: 11 VTKERTRHGKIIYYFRKGH----GRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66 V + ++G ++ FR GRR+ + A +A+ +T Y + R Sbjct: 6 VIQMTRKNGPGVWQFRWSDKDLNGRRVYHRQVIGTIDQYADEAAVRHATLPLIYEVNSRS 65 Query: 67 -----KPTTLKWLISEYRKSAHWGS----LAVNSRISFESYFDQIIR-KSGDFDYRKITT 116 T+ L + + + S +V + ++ Y + IR + G +I Sbjct: 66 PHDHVGAITVDQLCEHFEQ-WEFRSSISLRSVATIKTYRGYIRRWIRPQWGSRKLDEIKA 124 Query: 117 KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176 + + + S S + + + +LF A R E NP V + ++ T Sbjct: 125 TDVEAWLRSLNLARGSRSKLRSILSILFNHACRHELFDHNPIRFVRQGAKRLHTPDVLTG 184 Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT------- 229 +++ + R +GLR + + + + ++ Sbjct: 185 SEIKLLVESLPL--RERTLVLLAASTGLRQGEIFGLKWRDVDFEHGELNVIRSMVCGVVG 242 Query: 230 -----GTIITVELPDGFMKLLAMT------PIGKETFFI----NNDKQKMNATQFSIWFK 274 + V L L + F N K + + Sbjct: 243 ACKTESSQRPVPLHHRLAAALLAWRPNCNFKTQDDWVFASRLHNGRKPYWGPVILRKYIQ 302 Query: 275 AKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRL 331 A K G++K H R+ AT+ G + ++ + YT+ + Sbjct: 303 PAAQKLGIHKQIGWHTFRRTYATLLRSLGVEFKVMQELMRHSSLRTTLDVYTQAVGPAKR 362 Query: 332 GIKNS 336 + + Sbjct: 363 AAQAA 367 >gi|308177312|ref|YP_003916718.1| tyrosine recombinase subunit XerC [Arthrobacter arilaitensis Re117] gi|307744775|emb|CBT75747.1| tyrosine recombinase subunit XerC [Arthrobacter arilaitensis Re117] Length = 334 Score = 103 bits (257), Expect = 4e-20, Method: Composition-based stats. Identities = 43/293 (14%), Positives = 100/293 (34%), Gaps = 49/293 (16%) Query: 85 GSLAVNSRISFESYFDQI----IRKSGDFDYRKITTKHIRSGVESRKHT---PSSAIQFL 137 + N+ +++ + +GD ++I+ + +R + + ++ + + Sbjct: 34 RGRSENTLRAYDVDLRNLGQFLNEHAGDPALKQISVQMLRDWLAYLHESEVSRTTLARRI 93 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS------- 190 ++++ F WA++ V +P L + PK++ + + S + + Sbjct: 94 SAVKNFFAWALKNHLVENDPALRLAAPKKERRLPHILQPSQIDRLLSEHAGLTEENEAAR 153 Query: 191 -----------------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--- 230 + R+ E L SGLR S+ + + +++ G Sbjct: 154 QKGDGTDQDPKARAIQCRDRVIAELLYASGLRISELVALDISDIDFERRTLRVLGKGNKE 213 Query: 231 ---------TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281 + +E + +++A + ++N Q + G Sbjct: 214 RMVPFGKPAERVIIEWIRSYRRVVAAEQAED-ALLVGVRGSRLNVRQAREVIASALRSLG 272 Query: 282 VNKSA---HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIR 330 + SA H +R AT D GA + G ++ + YT DR+R Sbjct: 273 -DTSASGPHALRHTVATHLLDGGADLRAVQEFLGHASLATTQLYTHVSVDRLR 324 >gi|317055389|ref|YP_004103856.1| integrase family protein [Ruminococcus albus 7] gi|315447658|gb|ADU21222.1| integrase family protein [Ruminococcus albus 7] Length = 393 Score = 103 bits (257), Expect = 4e-20, Method: Composition-based stats. Identities = 59/321 (18%), Positives = 111/321 (34%), Gaps = 53/321 (16%) Query: 65 RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIRS 121 + + L E+ ++ +L + +E ++ G KIT +H++ Sbjct: 63 KTSAMKFQELAEEWFENYAKNALRSTT---YERMLQLTHRVYPAIGHLRIDKITARHLQG 119 Query: 122 GVESRKH-----------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170 V S P + L+ + +F +AVR + V+ NPC V PK + + Sbjct: 120 FVNSLAKEGANEKTGKPLAPKTIRHNLSFISDVFSYAVRMDLVSDNPCRKVTIPKGEVKE 179 Query: 171 IRPWTKEDMQQFK-SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIK-- 225 +++E++ Q + E ++ R F + YSG R S+ + + NNI SIK Sbjct: 180 KPIYSQEEIAQLLTAINGEDTKYRAFFYLIAYSGFRRSEMLGLEWKDIDFENNIISIKRT 239 Query: 226 ------------TQKTG-TIITVELPDGFMKLLAMTP--------------IGKETFFIN 258 T KT + +++ M +L + + F+ Sbjct: 240 SNYTAERGIYTDTTKTKRSKRVLKISPYIMNILKELKDEQDEEALRLGDKWVESDRLFVK 299 Query: 259 NDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGW-KTV 316 + + MN W K K + H R F+A+ +G + G + Sbjct: 300 WNGEPMNNQTPYGWLKEFCEKNDMPFYGIHSFRHFAASALISSGLDVVTVSGALGHCNSG 359 Query: 317 DQAETYTKGAD--RIRLGIKN 335 Y + R+ Sbjct: 360 TTLNVYAHMFQTAQARVAQAM 380 >gi|262067785|ref|ZP_06027397.1| site-specific recombinase, phage integrase family [Fusobacterium periodonticum ATCC 33693] gi|291378508|gb|EFE86026.1| site-specific recombinase, phage integrase family [Fusobacterium periodonticum ATCC 33693] Length = 360 Score = 103 bits (257), Expect = 4e-20, Method: Composition-based stats. Identities = 61/359 (16%), Positives = 127/359 (35%), Gaps = 38/359 (10%) Query: 6 RLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSA-----LTGSTPKREY 60 R P++ ++ R + G R+ L Y A L Sbjct: 17 RRKPWLLRDNKRFNEE-----TGKFERLVLGVFETKKEAETYRIAYFTNNLDMLEKTDIK 71 Query: 61 INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120 I+ ++K T + + + + K+ + + ++E+ F + +K + KI ++ Sbjct: 72 IHKKKEKGITFEQVYNLWLKN---KDVNDGTLTNYETQFKR-SKKLHKMEINKINGILLQ 127 Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCL-----SVERPKRKTEGIRPWT 175 S T S+ + ++F +A+ + + N +VE+ K+ ++ R T Sbjct: 128 DIFYSLNLTNSTLRVLKSFWSMIFDFAILNDMCSKNYAKYLKTKTVEKGKKTSDRERVIT 187 Query: 176 KEDMQQFKSFWSEGSQPR----LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231 +E++Q S + L Y+GLR S+ R + + N + + +K+ + Sbjct: 188 QEELQVLWDNISNNETNKHGIIDMVLILCYTGLRISELLRVKRKDVYLNEYYFEVEKSKS 247 Query: 232 II---TVELPDGFMKLLAMT-PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSA 286 V + D + L + + D + + F F+ G++ S Sbjct: 248 KAGVRKVPIADKILDLFRARYFSKDKYLWQRLDGLEYDYDSFDNHFRILFRDLGLSYHSL 307 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIRLGIKNSRRISSVVD 344 H R A++ +D A ++ G Y K +R+ VVD Sbjct: 308 HDTRHTFASLLSDNVADKDAIIKIIGHSNYKTTSDVYIH---------KEIKRLKKVVD 357 >gi|238650850|ref|YP_002916705.1| site-specific tyrosine recombinase XerC [Rickettsia peacockii str. Rustic] gi|259710438|sp|C4K256|XERC_RICPU RecName: Full=Tyrosine recombinase xerC gi|238624948|gb|ACR47654.1| site-specific tyrosine recombinase XerC [Rickettsia peacockii str. Rustic] Length = 305 Score = 103 bits (257), Expect = 4e-20, Method: Composition-based stats. Identities = 47/284 (16%), Positives = 107/284 (37%), Gaps = 28/284 (9%) Query: 69 TTLKWLISEYRKSAHWG-SLAVNSRISFESYFDQIIR-----KSGDFDYRKITTKHIRSG 122 T+++ LI++++K + + ++ IS+ + + S I T IR Sbjct: 4 TSIQALINKWQKYLVLQRNYSNHTVISYNNDLKHFLEFMNYYNSELVTINHIKTADIRLI 63 Query: 123 VESRKH------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176 T SS + L++++ +++ + + + S++ PK+ + ++ Sbjct: 64 RSWLAKRNCDNFTASSISRGLSAVKNFYRFLEKTTQLNSHIIFSIKSPKKTKLLPKALSE 123 Query: 177 ED-------MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229 +D ++++ + + + + SGLR S++ HLQN F K Sbjct: 124 DDVVISLEHIEEYGNVKWVELRNKALLVLIYASGLRISEALSITKLHLQNLEFIRIIGKG 183 Query: 230 GTIITVELPD-------GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282 + ++++L E F +++ + F+ G+ Sbjct: 184 SKERIIPWLPIAKNLITQYLEILPYKLGDNEPIFRGKQGKELQPSVFNRELIKLKHFYGL 243 Query: 283 --NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 + +AH R A+ + GA L G K++ + YTK Sbjct: 244 PQHLTAHSFRHSFASHLLEHGADLRSLQELLGHKSLSTTQNYTK 287 >gi|319781237|ref|YP_004140713.1| tyrosine recombinase XerD [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317167125|gb|ADV10663.1| tyrosine recombinase XerD [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 305 Score = 103 bits (257), Expect = 4e-20, Method: Composition-based stats. Identities = 43/281 (15%), Positives = 92/281 (32%), Gaps = 31/281 (11%) Query: 75 ISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITT--KHIRSGVESRKHTPS 131 I + + + A N+ S+ + + + +R + Sbjct: 7 IEAFLEMMSAERGAAENTLSSYRRDLEDASGAIDGGLAGAAAADIRAYLDDIAARGFAAT 66 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS- 190 S + L+++R FK+ + +P +++ PK+ + ++ D + + + Sbjct: 67 SQARKLSAIRQFFKFLYAEGLRGDDPTGTLDSPKKGRPLPKTMSEADTGRLIDRAAIEAG 126 Query: 191 -------------QPRLAFEFLLYSGLRCSDSCRAGVQ-HLQNNIFSIKTQKTGTIITVE 236 + E L +GLR S+ V +++ F + K V Sbjct: 127 DVSSGDGDSLASLRLHALVEVLYATGLRVSELVGLPVTVAQRDDRFFMVRGKGDKERMVP 186 Query: 237 LPDGFMKLL-------AMTPIGKETFFIN---NDKQKMNATQFSIWFKAKATKAGV---N 283 L + A P ++ F+ +D ++ F+ K A +AG+ Sbjct: 187 LSAKARAAMKTWLAARAKVPAFADSPFLFPAASDSGYLSRQVFARDLKGLAARAGIASAK 246 Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 S H +R A+ GA + G + + YT Sbjct: 247 ISPHVLRHAFASHLLQNGADLRAVQQLLGHADISTTQIYTH 287 >gi|229096643|ref|ZP_04227614.1| Integrase/recombinase [Bacillus cereus Rock3-29] gi|228686849|gb|EEL40756.1| Integrase/recombinase [Bacillus cereus Rock3-29] Length = 305 Score = 103 bits (257), Expect = 4e-20, Method: Composition-based stats. Identities = 41/283 (14%), Positives = 97/283 (34%), Gaps = 29/283 (10%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFD----QIIRKSGDFDYRKITTKHIRSGV--- 123 L+++I +Y + LA + S+ + + + + IT + I+S + Sbjct: 4 LRFMIKDYLEDKELSGLAPRTIQSYGDTLNEFSLWLTTEKEIINIEDITPQVIKSYLLYC 63 Query: 124 -ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVA--INPCLSVERPKRKTEGIRPWTKEDMQ 180 + R + + L ++ F++ ++ + NP ++ P + + I+ ++ E ++ Sbjct: 64 SKERGNAVVTRNGKLQHLKTFFRYLEDEDVIEIRSNPTNKIK-PAKTDKTIKVYSDEQIK 122 Query: 181 QFKSFWS-----EGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTG 230 Q ++ E + + L +G+R + + +I K Sbjct: 123 QMLRYYRRMRSRENTLYSYRGHTVIVVLAGTGIRLGELVSMRWDSVDLLNKTITIFGKNR 182 Query: 231 TIITVELPDGFMKLLAMTPIGKE--------TFFINNDKQKMNATQFSIWFKAKATKAGV 282 ++ L D + L + E F ++ + + F + + G Sbjct: 183 KSLSTPLTDKVARELYEWRLFCEKYYIKLPAHVFNDHRGNPLTVNAVKLMFTRLSVRMGF 242 Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 +AH R A+ AG + L + E Y Sbjct: 243 KTTAHMFRHTYASNCLRAGMDIYTLSKLMHHSQIRTTEVYLHA 285 >gi|254510200|ref|ZP_05122267.1| phage integrase [Rhodobacteraceae bacterium KLH11] gi|221533911|gb|EEE36899.1| phage integrase [Rhodobacteraceae bacterium KLH11] Length = 295 Score = 103 bits (257), Expect = 4e-20, Method: Composition-based stats. Identities = 45/264 (17%), Positives = 83/264 (31%), Gaps = 15/264 (5%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD--YRKITTKHIRSGVESRKHTPS 131 L + L S+ S G + + + TPS Sbjct: 9 LRERMIEDMRIRGLGDKSQQSHIRAVKDFAAFLGRSPDTVTTEELRVYQLHMTDAGVTPS 68 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS-EGS 190 +T++R F +E + ++ + + + E++ + + G Sbjct: 69 VYNARITALRFFFSMTCGREEMKR----YMQFRTQPRKLPAVLSAEEVSELLAVAPGPGL 124 Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTIITVELPDGFMKLLA-- 246 + R A +GLR S+ C + ++ + K V L + LL Sbjct: 125 KYRAALSISYGAGLRASEVCNLTTGDIDSDRMLIHVVQGKGRKDRKVMLSPDLLDLLRDY 184 Query: 247 -MTPIGKETFFINNDK-QKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302 + F K ++ Q + F + AG+NK + H +R AT +AG Sbjct: 185 WCEARPEGWLFPGKPKINPISPRQLNRAFTSAKRMAGINKPATLHTLRHSFATHLLEAGT 244 Query: 303 TAHELMATYGWKTVDQAETYTKGA 326 + G + YTK A Sbjct: 245 DVRVIQVLLGHAKLTITAQYTKVA 268 >gi|167462395|ref|ZP_02327484.1| DNA integration/recombination/invertion protein [Paenibacillus larvae subsp. larvae BRL-230010] gi|322383376|ref|ZP_08057161.1| phage integrase-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321152335|gb|EFX45156.1| phage integrase-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 413 Score = 103 bits (257), Expect = 4e-20, Method: Composition-based stats. Identities = 41/310 (13%), Positives = 105/310 (33%), Gaps = 51/310 (16%) Query: 86 SLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR------------KHTPSS 132 +L+ + ++ + + +I+ G + I T HI + + K +P + Sbjct: 95 NLSPLTYQTYMHFIENRIMPVFGHKNLEDIRTLHIVTFINDLSKPEARKDGKSGKLSPGT 154 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM-QQFKSFWSEGSQ 191 ++ +F A + + NP + V++PK + + +++ + + E + Sbjct: 155 IQYIHRVLKNIFNRATEWQLIKTNPIVGVKKPKVEQTEFDFYDEDEAREAIAALSKEPRR 214 Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK-----------------TGTIIT 234 RL + G R + ++ + ++ K + Sbjct: 215 WRLLILGSMVGGFRRGELLALEWSNVDFDNMTLSINKSISLTKDGRAVEKAPKSKSSKRI 274 Query: 235 VELPDGFMKLLAM----------------TPIGKETFFINNDKQKMNATQFSIWFKAKAT 278 V++PD +M L + ++ F + + T + W+ Sbjct: 275 VDMPDWYMDELKVHEYEWKKEKLSVGDKWRGGDRQYVFHAGFGKPFHHTYPTEWWNGFTK 334 Query: 279 KAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKT-VDQAETYTKGADRIRLGIKNS 336 + + + H +R SAT+ +AGA+ + G A+ Y ++ + Sbjct: 335 RHNLKRVRFHDLRHSSATLLIEAGASMKAVQQRLGHSKHQTTADIYAHVT--KKVSRDTA 392 Query: 337 RRISSVVDSD 346 + + ++ Sbjct: 393 EKFNKFAPNN 402 >gi|240948188|ref|ZP_04752588.1| phage integrase family protein [Actinobacillus minor NM305] gi|240297481|gb|EER47995.1| phage integrase family protein [Actinobacillus minor NM305] Length = 420 Score = 103 bits (257), Expect = 4e-20, Method: Composition-based stats. Identities = 51/254 (20%), Positives = 100/254 (39%), Gaps = 20/254 (7%) Query: 95 FESYFDQIIRKSGDFDYRKITTKHIRSGVES-----RKHTPSSAIQFLTSMRVLFKWAVR 149 F Y + I K D + + I+S + S R +P++ + + ++ + +A R Sbjct: 157 FRLYIEPYIGKVIYSDLKALQIYQIQSDMISGNHYPRAFSPATCNRTIALLKTMGNFAYR 216 Query: 150 QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ--FKSFWSEGSQPRLAFEFLLYSGLRCS 207 EY++ N L V K + R ++ E+M+ + + + LL +G R + Sbjct: 217 LEYISENVALKVPLLKENNQRSRYFSLEEMKALLYHAEFYPNKYAGSLIALLLLTGARRN 276 Query: 208 DSCRAGVQ--HLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT--PIGKETFFINNDK-Q 262 + +A + + I + K G + L D M L +G F + Sbjct: 277 ELQQAKWEYLDVNAQILYVPNTKNGKPREIYLSDEAMYWLNRLERDVGNPYIFARKGSVK 336 Query: 263 KMNATQFSIWFKAKATKAGV----NKSAHGVRKFSATISADAGA-TAHELMATYGWKTVD 317 ++A +F+ K KAG+ H R AT+ +G +++ A ++ Sbjct: 337 PISAPRFA--LKQLLKKAGITDIDGICFHTARHSVATLLISSGKFNLYDVKAQLAHASIQ 394 Query: 318 QAETYTK-GADRIR 330 ++ Y K +R R Sbjct: 395 SSQRYAKLTENRQR 408 >gi|229175638|ref|ZP_04303146.1| Integrase [Bacillus cereus MM3] gi|228607779|gb|EEK65093.1| Integrase [Bacillus cereus MM3] Length = 330 Score = 103 bits (256), Expect = 4e-20, Method: Composition-based stats. Identities = 47/268 (17%), Positives = 87/268 (32%), Gaps = 25/268 (9%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131 WL Y L + F +Y + + K Y T Sbjct: 46 DWLFDNYEIEY----LEELTTEMFRNYINYM--KYDKKRYEGHKFIDSDKQGIGLCDT-- 97 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS----FWS 187 + + ++R L + R+E + +NP ++ ++ + + E++++ Sbjct: 98 TININIRTLRALINYLYREELIEVNPIEKIKLLRQDIDLTNSFNDEEIKEILRQPNLRDF 157 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKT--QKTGTIITVELPDGFMK 243 G + + LL SGLR + V + +I+ K V + K Sbjct: 158 VGFRDFVGINVLLDSGLRIQELMGLRVSDIDFQTRFITIQANKSKNRKPRLVPVSTHVTK 217 Query: 244 LLAMTPIGKET------FFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSA 294 +L + F+++ + + A F+ K A KAG+ +AH R A Sbjct: 218 VLLQLINENQAHFKTDRVFLSSYGEPLGANHFNKRLKYYAEKAGIKDKKVTAHVYRHTWA 277 Query: 295 TISADAGATAHELMATYGWKTVDQAETY 322 G A L GW + Y Sbjct: 278 KNMILNGCDAFTLQKIGGWSDIRTMRRY 305 >gi|38234089|ref|NP_939856.1| site-specific tyrosine recombinase XerC [Corynebacterium diphtheriae NCTC 13129] gi|38200351|emb|CAE50037.1| Putative integrase/recombinase [Corynebacterium diphtheriae] Length = 302 Score = 103 bits (256), Expect = 4e-20, Method: Composition-based stats. Identities = 45/293 (15%), Positives = 99/293 (33%), Gaps = 24/293 (8%) Query: 68 PTTLKWLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDFD-YRKITTKHIRSGVES 125 P L L+ ++ + G + + S++S + + D + + + + Sbjct: 2 PAQLTELVDDFCEYLDLGLGRSPATVRSYKSDLFGFVNRFATLDQFTLDNVREWLAQAVA 61 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + ++ + S++ W +R Y I+ + PK + ++ M Sbjct: 62 DGKSRATIARRTASIKAFSGWLLRNGYNDIDVAARLVAPKVQRTLPMVVSERTMTNIVEK 121 Query: 186 WSEGS-----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPD 239 + + + R E L SG+R S+ C + + + G V D Sbjct: 122 PASTTEDTFVRDRAICELLYASGIRVSELCGLNTGDVDLKRQTARVTGKGNKQRVVPFGD 181 Query: 240 GFMKLL--------------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284 L A G + F+ ++++ Q + + G+ Sbjct: 182 QATAALSHWLNGVRSEMLISAGCTSGVDALFVGVRGKRIDPRQVRRIVETSGQEHGIGGL 241 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNS 336 + H +R +AT D GA + G +++ + YT R++ KN+ Sbjct: 242 APHALRHTAATHLLDNGADLRVVQEMLGHSSLNTTQIYTHVSTQRLKEAYKNA 294 >gi|114561634|ref|YP_749147.1| tyrosine recombinase XerC [Shewanella frigidimarina NCIMB 400] gi|114332927|gb|ABI70309.1| tyrosine recombinase XerC [Shewanella frigidimarina NCIMB 400] Length = 299 Score = 103 bits (256), Expect = 4e-20, Method: Composition-based stats. Identities = 36/285 (12%), Positives = 95/285 (33%), Gaps = 22/285 (7%) Query: 67 KPTTLKWLISEYRKSAHWGSLAVNSRISF----ESYFDQIIRKSGDFDYRKITTKHIRSG 122 KPT + + S++ S L+ + ++ D + + + + + + + Sbjct: 2 KPTDWQTIFSQHLSSER--QLSAYTVRNYLFELRRVEDMLAESTQLIEVSRDQLQSVMAT 59 Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 + + +P S L++++ F + +R+ V ++P ++ PK+ + + + Sbjct: 60 LHRKGLSPRSLSLCLSALKQFFDFLLREGAVTVSPAQTLSAPKQNKPLPKNMDVDAVSHL 119 Query: 183 KSF---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-IITVELP 238 S + + E SGLR ++ ++ + +K G+ V + Sbjct: 120 LSIEGDDPLSLRDKAIMELFYSSGLRLAELASLDCVDIKFDQSEVKVMGKGSKQRVVPIG 179 Query: 239 DGFMKLLAMTPI---------GKETFFINNDKQKMNATQFSIWFKAK--ATKAGVNKSAH 287 + + + F+++ ++++ V H Sbjct: 180 QVALTAIKTWLNCRNQLSCVEAGDALFVSSQGKRLSHRSIQARMAKWGQEQAMAVKVHPH 239 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 +R AT ++ + G + + YT D L Sbjct: 240 KLRHSFATHMLESSQDLRAVQELLGHANLSTTQIYT-SLDFQHLA 283 >gi|253699447|ref|YP_003020636.1| integrase family protein [Geobacter sp. M21] gi|251774297|gb|ACT16878.1| integrase family protein [Geobacter sp. M21] Length = 433 Score = 103 bits (256), Expect = 5e-20, Method: Composition-based stats. Identities = 50/305 (16%), Positives = 100/305 (32%), Gaps = 38/305 (12%) Query: 58 REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITT 116 +E +K T+K L +Y + +S E F + + G I Sbjct: 90 KEEEQEQHRKALTVKQLFDDYLVRHAKLNKRESSWREDERLFKVNVEPEWGKRKAEHIKK 149 Query: 117 KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176 + ++ P+ + R LF +AV ++ + P V+ P R T Sbjct: 150 RDCIELLDKYADRPALCHNVMKLTRKLFNFAVEKDILEHTPFTGVKVPVELESRERILTD 209 Query: 177 EDMQQF-KSFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ--KTG 230 ++++ ++ + + + + + LL +G R + C V + N ++I + K G Sbjct: 210 TEIKKLWRTELPKAAISDEVKQIIKLLLLTGQRVGEVCGITVNEVDGNWWTIPQERSKNG 269 Query: 231 TIITVELPDGFMKLLAMTPIG----KETFFINNDKQKMNA--------TQFSIWFKAKAT 278 V L D +KLL + G ++D + + K Sbjct: 270 QTHRVYLTDTAIKLLGKSINGYYFPSPVVKNDSDGKPVFKHIDENAVAYAIRKNLKDYQP 329 Query: 279 KAGVNK-------------------SAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319 + + + H +R+ +T A G + A G K Sbjct: 330 RRPIKGDRISMVQVPEEKKMSIAHFTPHDLRRTFSTSLAKLGFNDEIIDAVMGHKKQGVI 389 Query: 320 ETYTK 324 + Y + Sbjct: 390 KIYNR 394 >gi|56552826|ref|YP_163665.1| integrase family protein [Zymomonas mobilis subsp. mobilis ZM4] gi|56544400|gb|AAV90554.1| integrase family protein [Zymomonas mobilis subsp. mobilis ZM4] Length = 399 Score = 103 bits (256), Expect = 5e-20, Method: Composition-based stats. Identities = 54/322 (16%), Positives = 107/322 (33%), Gaps = 31/322 (9%) Query: 45 PAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-II 103 +++ + N+ RK P T+K + + +++ ++ D+ II Sbjct: 75 QEWLAEVRKGGDPSAAKNAARKAP-TMKEFCHTFIEDYSKQRNKPSTQRGYQGVIDRCII 133 Query: 104 RKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVA--INPCLSV 161 G + + + + ++ + + A + +R +F A NPC V Sbjct: 134 PIMGRMKVQDVKRPDVAALMKKLAYKQAEANRTFGVLRKMFNLAEVWGLRPDGTNPCRHV 193 Query: 162 ERPKRKTEGIRPWTKEDM----QQFKSFWSEGSQPR---LAFEFLLYSGLRCSDSCRAGV 214 + R +++ +Q + + G + LA R S+ C Sbjct: 194 PM-YPPGKETRLIVDDELVRIFRQLEHLEAVGLENYVIPLAIRLQFEFAARRSEICPLEW 252 Query: 215 QHLQNN--IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFI----NNDKQKMN-AT 267 + KTG I+ + + +LL+ P + ++ N+ Q M Sbjct: 253 DWIDLEKRRVVWPDSKTGG-ISKPMSEEAYRLLSTAPRREGCPYVLPSPNDPTQHMTHGE 311 Query: 268 QFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 + W + + HG+R + T A++G M G KTV Y D Sbjct: 312 HYGGWTRVLKAAGVPHVGTHGIRHRATTDIANSGVPTKVGMKLTGHKTVAMFMHYVHTED 371 Query: 328 R-----------IRLGIKNSRR 338 + RL I + R Sbjct: 372 KPVRDAAELVANRRLAITGASR 393 >gi|18310790|ref|NP_562724.1| tyrosine recombinase XerD [Clostridium perfringens str. 13] gi|110799101|ref|YP_696492.1| tyrosine recombinase XerD [Clostridium perfringens ATCC 13124] gi|168206137|ref|ZP_02632142.1| tyrosine recombinase XerD [Clostridium perfringens E str. JGS1987] gi|168210828|ref|ZP_02636453.1| tyrosine recombinase XerD [Clostridium perfringens B str. ATCC 3626] gi|168214383|ref|ZP_02640008.1| tyrosine recombinase XerD [Clostridium perfringens CPE str. F4969] gi|168215437|ref|ZP_02641062.1| tyrosine recombinase XerD [Clostridium perfringens NCTC 8239] gi|169343727|ref|ZP_02864726.1| tyrosine recombinase XerD [Clostridium perfringens C str. JGS1495] gi|182625652|ref|ZP_02953421.1| tyrosine recombinase XerD [Clostridium perfringens D str. JGS1721] gi|18145471|dbj|BAB81514.1| probable integrase/recombinase [Clostridium perfringens str. 13] gi|110673748|gb|ABG82735.1| tyrosine recombinase XerD [Clostridium perfringens ATCC 13124] gi|169298287|gb|EDS80377.1| tyrosine recombinase XerD [Clostridium perfringens C str. JGS1495] gi|170662459|gb|EDT15142.1| tyrosine recombinase XerD [Clostridium perfringens E str. JGS1987] gi|170711119|gb|EDT23301.1| tyrosine recombinase XerD [Clostridium perfringens B str. ATCC 3626] gi|170714149|gb|EDT26331.1| tyrosine recombinase XerD [Clostridium perfringens CPE str. F4969] gi|177909054|gb|EDT71529.1| tyrosine recombinase XerD [Clostridium perfringens D str. JGS1721] gi|182382078|gb|EDT79557.1| tyrosine recombinase XerD [Clostridium perfringens NCTC 8239] Length = 290 Score = 103 bits (256), Expect = 5e-20, Method: Composition-based stats. Identities = 39/269 (14%), Positives = 96/269 (35%), Gaps = 18/269 (6%) Query: 72 KWLISEYRKSAHWGSLAVNSRISF----ESYFDQIIRKSGDFDYRKITTKHIRSGVESRK 127 K L+S+Y N+ ++ Y D + K ++ Sbjct: 2 KDLVSKYEVYLESIGKRKNTVSAYITDVSMYLDFVEEKGFKVSEDSYPLISYVQHLKESH 61 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS--- 184 +PSS + + S+R + + V +E++ P L++++ + + + T E++ + + Sbjct: 62 KSPSSIQRTIISLRNFYNFLVAEEFLKKVPNLTMKKERVEKKKPLVLTVEEINKIMNSTN 121 Query: 185 -FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242 +G + + E + +G++ S+ ++ + + + + + G + + Sbjct: 122 VLTEKGIRDKALLELMYATGMKVSELISLRIEDINLDSSFVNCRDSRGYERLIPIGKAAK 181 Query: 243 KLLAMTPI-------GKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFS 293 + L + G + F+N + + K A A + K + R Sbjct: 182 ESLKRYIVVREDNSKGSDKLFLNMSGEPITRQGVWRIVKEYAVIANIGKDINLNTFRHSF 241 Query: 294 ATISADAGATAHELMATYGWKTVDQAETY 322 A GA A + G + + + Y Sbjct: 242 AVHLLQNGANAKVVQELLGNQVMTYIDMY 270 >gi|85058907|ref|YP_454609.1| phage integrase [Sodalis glossinidius str. 'morsitans'] gi|84779427|dbj|BAE74204.1| phage integrase [Sodalis glossinidius str. 'morsitans'] Length = 355 Score = 103 bits (256), Expect = 5e-20, Method: Composition-based stats. Identities = 55/338 (16%), Positives = 110/338 (32%), Gaps = 28/338 (8%) Query: 7 LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMS--ALTGSTPKREYINS- 63 LPP + +G Y G+ L A + A+ GS+ + ++ Sbjct: 12 LPPNLQ---PINGGYFCYRDPRTGKEYGLGRNRREAITQAIAANMAIYGSSKQSPLVDRI 68 Query: 64 PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123 + TT+ + Y L + Y I G+F +++ TK + + + Sbjct: 69 SGTQATTVSEWTTRYLTILEGRKLKPKTMTEHRKYLKAINEHLGEFAIQQVQTKDVAAFL 128 Query: 124 ES--RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 + + A + + LF+ A+ V+ NP + + + + R T E+ + Sbjct: 129 NLWVKAGKETMANKLRKEVIDLFREAIADGIVSHNPAEATRNQRVEIQRERI-TLEEWKV 187 Query: 182 FKSFW-SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE---- 236 + + + L +G R D ++ ++ IK KTG ++ Sbjct: 188 IRKIAEKLPAWVGSCLDLALVTGQRLGDIQALLWENFKDGRLYIKQAKTGMMLAFSAVTR 247 Query: 237 -------LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK----- 284 L D + A+ G ++ ++ A S F +G+ Sbjct: 248 IDCLNLCLADVLSQFKALNSTG-SHIVADSKHEQFAAKTISAAFLKARRVSGLTWQGDPP 306 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 S H +R A G K+ + + Y Sbjct: 307 SFHEIR-SLAARLYTDEKGRDYAQKLLGHKSSEMTDKY 343 >gi|326803545|ref|YP_004321363.1| phage integrase, N-terminal SAM domain protein [Aerococcus urinae ACS-120-V-Col10a] gi|326651486|gb|AEA01669.1| phage integrase, N-terminal SAM domain protein [Aerococcus urinae ACS-120-V-Col10a] Length = 309 Score = 103 bits (256), Expect = 5e-20, Method: Composition-based stats. Identities = 46/275 (16%), Positives = 93/275 (33%), Gaps = 28/275 (10%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGV---ESRK 127 + EY K + + ++ S FD I D D+ +++ + IR + + + Sbjct: 10 LKEYIK--DEKHYSDQTLKAYLSDFDDFISFLRDELLISDFEQLSYRDIRLYLSHLQRKG 67 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + S + L+S+R F + Q V NP V+ K + + ++ Sbjct: 68 LSRKSLARHLSSLRTAFNRFLDQGLVKDNPFTYVQAAKTGLRLPDFFYEAELDPLFEAAK 127 Query: 188 EGSQPR-----LAFEFLLYSGLRCSDSCRAGVQHLQN-NIFSIKTQKTGTIITVE----L 237 G + EFL +G R S+ + + N ++ K V Sbjct: 128 -GPRALDKRNIALLEFLYATGARVSECTNLTITQVDLKNSIALLHGKGSKDRYVPFGSYC 186 Query: 238 PDGFMKLLAMTPI------GKETFFINNDKQKMNATQFSIWFKA--KATKAGVNKSAHGV 289 + L E F+N+ + + + + K + + ++ H + Sbjct: 187 KKALEEYLDSGRPVLLKGHDHEYIFVNSRGEALTPSGVTYILNDLVKKSASNLDIHPHKL 246 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 R AT + GA + G ++ + YT Sbjct: 247 RHSFATHLLNHGADIRTVQELLGHSSLSSTQIYTH 281 >gi|224372317|ref|YP_002606689.1| phage integrase [Nautilia profundicola AmH] gi|223589124|gb|ACM92860.1| phage integrase [Nautilia profundicola AmH] Length = 269 Score = 103 bits (256), Expect = 5e-20, Method: Composition-based stats. Identities = 37/246 (15%), Positives = 95/246 (38%), Gaps = 10/246 (4%) Query: 88 AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWA 147 + N+ ++E+ ++ I + T + E K T + + ++++R F++ Sbjct: 21 SHNTYKTYETVLNEAINFIEIENNIINITPYRLHIAELNKKTIA---KKVSALRSFFEFL 77 Query: 148 VRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCS 207 + + + E K +P + E +++ + S LA + GLR S Sbjct: 78 ETEGHKFK--IIGDEHIKVPKTLPKPVSMEHIKK--ALKSATMDEYLAIITIFSLGLRIS 133 Query: 208 DSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL--AMTPIGKETFFINNDKQKMN 265 ++ + ++ + I+ K + + + + K+ + + + Sbjct: 134 EAAGITLSDIKGDWIEIR-GKGAKTRLLPVHPKLKDFINKYLEIHPKKEYLFEKEGVPLG 192 Query: 266 ATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 A + + K G++ + H +R AT GA +++ G + + + YTK Sbjct: 193 ADKIRYLIQRAFKKHGIHVTPHQLRHSFATYMLQNGARINDVSELLGHEFISTTQIYTKL 252 Query: 326 ADRIRL 331 ++ ++L Sbjct: 253 SNSLKL 258 >gi|319426956|gb|ADV55030.1| integrase family protein [Shewanella putrefaciens 200] Length = 324 Score = 103 bits (256), Expect = 5e-20, Method: Composition-based stats. Identities = 34/233 (14%), Positives = 77/233 (33%), Gaps = 20/233 (8%) Query: 118 HIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW-TK 176 H R ++ + +T ++ + + ++ N +E P + + Sbjct: 69 HYRKLLDHQPLGQQQKRNLVTYIKTFVQCMYSKGLLSANTLAGIELPHSGRALPKALFSV 128 Query: 177 EDMQQFKS----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTG 230 ++++ + F G + R E +G+R S+ + + + + K Sbjct: 129 TEIEKILAQSLLFGVHGLRDRAILEVFFATGIRRSELMMLDIDDIDFTAKLLRVNHGKGQ 188 Query: 231 TIITVELPDGFMKLLAM----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKA 280 V + + + L F+ N+ ++ A Q S + Sbjct: 189 KERIVPMSERACEWLVFYLSKLRPMISFIGSGGALFLANNGTRLRANQLSEMAGRYVRLS 248 Query: 281 GVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 G+ ++ H R +AT D GA + G ++ + YT R +L Sbjct: 249 GIKRTGACHLFRHATATTMLDNGAELRHVQEMLGHASILTTQIYTH-VSRAKL 300 >gi|326335714|ref|ZP_08201900.1| site-specific tyrosine recombinase XerC [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325692143|gb|EGD34096.1| site-specific tyrosine recombinase XerC [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 296 Score = 103 bits (256), Expect = 5e-20, Method: Composition-based stats. Identities = 44/275 (16%), Positives = 99/275 (36%), Gaps = 23/275 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQ----IIRKSGDFDYRKITTKHIRSGVESR-- 126 +I + + ++ ++ + ++ + + + K+ IRS + Sbjct: 1 MIDAFENYLRLEKKYSPHTVTAYLTDVEEFAAFLKEEDPTVELSKVNYPLIRSWIIHLVE 60 Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 K T S + + S++ + + VR + P K + + P+++++++ S Sbjct: 61 SKITNRSINRKIASLKAYYAFLVRSLAIKSTPFQQHIPLKTQKKLSIPFSEKEIEDVLSI 120 Query: 186 WSEGS-----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELP- 238 +E + R+ E +G+R S+ + + + +IK K + L Sbjct: 121 PTEEDSYTSLRNRMIIELFYATGIRRSELIELKINDIDLSQKTIKVLGKRNKERIIPLIH 180 Query: 239 ---DGFMKLLAMTP---IGKETFFINNDKQKMNATQFSIWFKAK--ATKAGVNKSAHGVR 290 + K L + +E F+ N+ +KM + + KS H +R Sbjct: 181 TVVESLEKYLLIRKDVETSEEFLFLTNNGKKMYPKLVYNIINSYFSSVTTKQKKSPHVLR 240 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 AT D GA + + G + + YT Sbjct: 241 HSFATHLLDNGADLNAVKELLGHAGLAATQVYTHS 275 >gi|296444833|ref|ZP_06886796.1| integrase family protein [Methylosinus trichosporium OB3b] gi|296257781|gb|EFH04845.1| integrase family protein [Methylosinus trichosporium OB3b] Length = 434 Score = 103 bits (256), Expect = 5e-20, Method: Composition-based stats. Identities = 59/363 (16%), Positives = 112/363 (30%), Gaps = 37/363 (10%) Query: 10 FVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69 FV + R G R+ ++ P ++ + A + R+K Sbjct: 42 FVVEYRPNGGGRGVAKRRVTIGKVGTLTPEQARKSAGELLARARLGADPAQEIADRRKAQ 101 Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129 T+ L + G L ++R S+++ ++ G +T I + + Sbjct: 102 TVAALCDAFEVEHVDGKLKPSTRASYKAALARLKDAHGSAKAESVTRAQIATLHAKLATS 161 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVA--INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 P A + L++ LF W + + +V NP ++R R+++ R T +++ + + + Sbjct: 162 PYVANRALSTWAKLFAWGMTRSFVPKGDNPAREIDR-YRESKRERFLTGDELGRLGAALA 220 Query: 188 EGSQPRLAFE------------------------------FLLYSGLRCSDSCRAGVQHL 217 EG L + L+ +G R + A + Sbjct: 221 EGETAGLPYAVDATKAKAKHAPKPENRLVKLDPFAVAAIRLLILTGARLREIMDAQWSQV 280 Query: 218 Q--NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKA 275 + + KTG L + I I K + A Sbjct: 281 DFQRGMLFLADSKTGRKPIYLGAAALAVLADLPRIEGNPHIIAGAKDGAPRADLQRPWAA 340 Query: 276 KATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGI 333 AG+ H +R A++ A A + G E Y AD +R Sbjct: 341 VRQAAGLEGVRLHDLRHSFASVGAGASLGLPIIGKLLGHMQAATTERYAHLDADPLRRAA 400 Query: 334 KNS 336 Sbjct: 401 DTI 403 >gi|218290869|ref|ZP_03494933.1| integrase family protein [Alicyclobacillus acidocaldarius LAA1] gi|218239136|gb|EED06338.1| integrase family protein [Alicyclobacillus acidocaldarius LAA1] Length = 377 Score = 103 bits (256), Expect = 5e-20, Method: Composition-based stats. Identities = 41/297 (13%), Positives = 95/297 (31%), Gaps = 40/297 (13%) Query: 67 KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSG--V 123 T+ L+ ++ + + + + I G + HI++ + Sbjct: 59 SDMTVGKLLEDWLLDKQFH-VKPTTFELYSRIVTIHIAPMIGHLTLSDLRPDHIQNMYRM 117 Query: 124 ESRKHTPSSAIQFL---TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 +K P A + +R K A++ + +P +VE P+ + WT E ++ Sbjct: 118 LQQKTPPLQAKTIRTIHSILRNALKRALKWGLIPRDPSEAVELPRSPRRTLAIWTPEQIR 177 Query: 181 QFKSF-WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT----- 234 F + S+ F +Y+G+R + + I+ +T + + Sbjct: 178 TFLAVNQDIDSRYYTIFVLAIYTGMRKGEILALRWSDIDFERDIIQVTRTFSWVDGEAMF 237 Query: 235 -------------------VELP------DGFMKLLAMTPIGKETFFINNDKQKMNATQF 269 V+L + +L A + D + + + Sbjct: 238 LEAKTHHSNRSIAISHDVKVQLLRHREFQEQEKRLYADSYHDGNLVVARPDGEPIRLSSL 297 Query: 270 SIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324 ++ +AG+ + H +R A++ G + G + +TY+ Sbjct: 298 QKQWRHAVKRAGLPEIRFHDLRHTHASLLLLQGVHPKIVSERLGHSNISITMDTYSH 354 >gi|75674591|ref|YP_317012.1| tyrosine recombinase XerD [Nitrobacter winogradskyi Nb-255] gi|74419461|gb|ABA03660.1| tyrosine recombinase XerD subunit [Nitrobacter winogradskyi Nb-255] Length = 319 Score = 103 bits (256), Expect = 5e-20, Method: Composition-based stats. Identities = 41/279 (14%), Positives = 89/279 (31%), Gaps = 38/279 (13%) Query: 89 VNSRISFESYFDQIIRKSGDFDYRKI-----TTKHIRSGVESRKHTPSSAIQFLTSMRVL 143 N+ ++ + + + T + + ++ R SS + L++MR L Sbjct: 27 ENTLDAYRRDLEDLSAFLARARRNFVIAETQTLRDYLNDLDLRGFKSSSVARRLSAMRHL 86 Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---------SEGSQPRL 194 F++ + + + +P + PKR + + D+ + + R Sbjct: 87 FRFLLSERVRSDDPAAILSGPKRGRSLPKVLSIADVDRLLGRAKADAESLDAPPARRLRA 146 Query: 195 A-----FEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFMKLLA-- 246 A E L +GLR S+ + + + + K V L + + +A Sbjct: 147 ARLYCLLEVLYATGLRVSELVSLPLSAARRDARMIVVRGKGDKERLVPLNNASRQAMADY 206 Query: 247 -----------MTPIGKETFFINNDK--QKMNATQFSIWFKAKATKAGVN---KSAHGVR 290 ++++ + + F+ K A AG+ S H +R Sbjct: 207 LQTMADQRGAGKAASPRQSWLFPSFGESGHLTRQHFARELKELAAAAGLAPRLVSPHVLR 266 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 A+ GA + G + + YT + Sbjct: 267 HAFASHLLHNGADLRIVQTLLGHTDISTTQIYTHVVEER 305 >gi|163856477|ref|YP_001630775.1| hypothetical protein Bpet2166 [Bordetella petrii DSM 12804] gi|163260205|emb|CAP42507.1| int2 [Bordetella petrii] Length = 402 Score = 103 bits (256), Expect = 5e-20, Method: Composition-based stats. Identities = 56/328 (17%), Positives = 95/328 (28%), Gaps = 26/328 (7%) Query: 44 IPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-I 102 + A + +K T+ L ++ + +++ ++ D+ I Sbjct: 73 MAQDWLAEVRRGGDPGGAKTEARKAPTIAELCKKFMEDYSKKRNKPSTQEGYQGVIDRCI 132 Query: 103 IRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVA--INPCLS 160 I G + I +E + P+ A + +R +F A Y NPC Sbjct: 133 IPLLGRKKVLDVKRPDIAGLMEKLSYKPTEANKAFGVLRKMFNLAEVWGYRPDGTNPCRH 192 Query: 161 VERPKRKTE------GIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRA-- 212 V E G + + ++ E LA R S+ C Sbjct: 193 VPMFPPGKETRLIVDGELALIYRHLDKLEAEGLENYVIPLAIRLQFEFAARRSEVCPLEW 252 Query: 213 GVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIW 272 +N KTG + + + L + + + F Sbjct: 253 TWLDFENRRVVWPDSKTGGMSKPMSAEAYRLLSTAPRREGCPYVLPSPHNPDKHLTFGEH 312 Query: 273 FKAKA---TKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 + AGV HG+R S T A++G M G KTV Y D+ Sbjct: 313 YGGWCRVLKAAGVPHVGTHGIRHRSTTDIANSGVPTKVGMKLTGHKTVAMFMHYVHTEDK 372 Query: 329 -----------IRLGIKNSRRISSVVDS 345 R I +RR V + Sbjct: 373 PVRDAAELVASRRQAITGARRTDPVETA 400 >gi|163755827|ref|ZP_02162945.1| integrase, site-specific recombinase [Kordia algicida OT-1] gi|161324348|gb|EDP95679.1| integrase, site-specific recombinase [Kordia algicida OT-1] Length = 295 Score = 103 bits (256), Expect = 5e-20, Method: Composition-based stats. Identities = 40/263 (15%), Positives = 92/263 (34%), Gaps = 23/263 (8%) Query: 85 GSLAVNSRISFESYFDQIIR----KSGDFDYRKITTKHIRSGVESRKHTP---SSAIQFL 137 + + ++ ++E + D + IR+ + S ++ + + Sbjct: 14 KNYSEHTVTAYEKDLRSFAEFCKKEYEDDSIINVHYVQIRNWIVSLVEKGLQNATINRKI 73 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS-----EGSQP 192 +S++ +K+ ++ + + +P + K + P+++++M + EG + Sbjct: 74 SSLKTYYKYLLKTKQIEASPLAKHKALKTAKKVQVPFSQKEMDIVLNAVEFKNDFEGVRN 133 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMK-----LLA 246 + E +G+R S+ + +I+ K V L +L Sbjct: 134 KTIIEMFYATGMRRSELINLKQSDIDYTAKTIRILGKRNKERIVPLLQKLEAQLKEYILH 193 Query: 247 MTPIG---KETFFINNDKQKMNATQFSIWFKAKATKA--GVNKSAHGVRKFSATISADAG 301 I KE F+ K+ + + A V KS H +R AT + G Sbjct: 194 RKQIDNQKKEELFLTAKGNKIYSNLVYRLINDYFSIASTKVKKSPHMLRHTFATHLLNQG 253 Query: 302 ATAHELMATYGWKTVDQAETYTK 324 A + + G ++ + YT Sbjct: 254 ADLNAVKELLGHASLASTQVYTH 276 >gi|229165299|ref|ZP_04293086.1| Prophage LambdaBa04, site-specific recombinase, phage integrase [Bacillus cereus AH621] gi|228618124|gb|EEK75162.1| Prophage LambdaBa04, site-specific recombinase, phage integrase [Bacillus cereus AH621] Length = 374 Score = 103 bits (256), Expect = 5e-20, Method: Composition-based stats. Identities = 43/292 (14%), Positives = 95/292 (32%), Gaps = 37/292 (12%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH 128 TL + E+ ++ + + +++ + +II G + + H + V+S Sbjct: 64 TLSEYLQEWLENTAKQRVRETTFTNYKRAVNNRIIPVLGSHKLKDLKPLHGQRFVKSLID 123 Query: 129 ---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 +P ++ + AV+ E + NP VE P+ + W+ E+ + F ++ Sbjct: 124 EELSPKYIEYIFIVLKGALEDAVKWELLYKNPFEHVEIPRPRKVVNNTWSIEETKTFLTY 183 Query: 186 WSEGSQPRLA-FEFLLYSGLRCSDSCRAGVQHL---------------QNNIFSIKTQKT 229 + F L +G+R + +++ F KT Sbjct: 184 AKFDNPIYYHLFLLALNTGMRRGELLGLKWKNVDLVEGKISVTETLIYDERGFRFTEPKT 243 Query: 230 -GTIITVELPDGFMK--------------LLAMTPIGKETFFINNDKQKMNATQFSIWFK 274 G+ + + K + + F D Q + + F+ Sbjct: 244 SGSKRLISIDQTLCKEFKSYKAKQNEFKLAIGTAYEDHDLVFCREDGQPIYPRTLTTIFE 303 Query: 275 AKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324 + + K H +R AT+ G + G ++ +TY+ Sbjct: 304 RVVKTSKIPKIRFHDLRHTHATLLLKLGINPKIVSERLGHSSIKTTLDTYSH 355 >gi|182420027|ref|ZP_02951261.1| integrase [Clostridium butyricum 5521] gi|182376064|gb|EDT73651.1| integrase [Clostridium butyricum 5521] Length = 380 Score = 103 bits (256), Expect = 5e-20, Method: Composition-based stats. Identities = 60/348 (17%), Positives = 118/348 (33%), Gaps = 48/348 (13%) Query: 28 GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWG-S 86 G RR+ A+ A K SP K I ++ Sbjct: 24 GKRRRVIKQGFRTKKLAEAF--ATQILDKKNHGFVSPTDSDLLFKNFIMKWYDMHTTSLK 81 Query: 87 LAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSG----VESRKHTPSSAIQFLTSMR 141 L+VN+R + S + +I G++ + I+ +++ + + P + ++L + Sbjct: 82 LSVNTRNDYLSRINTNLIPLLGEYKIKDISIDVVQNFYNTLINEKHLKPVTVKKYLDILS 141 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY 201 K+A ++ + P +++ K + I W ++++ F ++ + + Sbjct: 142 SCLKYAQSKDLIYKLPTNYIQKVKIQKPKIEYWNQDEVNFFLNYIK-NTYLYTPIFIDVL 200 Query: 202 SGLRCSDSCRAGVQHLQ--NNIFSIKTQ---------------KTGT---IITVE--LPD 239 +GLR + C + N I ++ Q KT + IT+ L D Sbjct: 201 TGLRIGELCGLRWCDVDLQNGIITVNHQLIHDKRLKVLMLTDLKTSSSHRRITIPKILID 260 Query: 240 GFMKLLA-MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-------------- 284 +L A + ++ + K S+ F K K +K Sbjct: 261 YLKELKADRSATDNGYVVLDRNDYKYTPRSLSMNFTKKVAKFSDSKEKHKDDKNYMQLKQ 320 Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIR 330 S HG+R AT+ G + G + TYT D ++ Sbjct: 321 ISFHGLRHTHATLLIANGENVKVVSERLGHTDIRMTLNTYTHVLDSMK 368 >gi|259909803|ref|YP_002650159.1| site-specific tyrosine recombinase XerC [Erwinia pyrifoliae Ep1/96] gi|224965425|emb|CAX56957.1| site-specific tyrosine recombinase [Erwinia pyrifoliae Ep1/96] Length = 351 Score = 103 bits (256), Expect = 5e-20, Method: Composition-based stats. Identities = 44/289 (15%), Positives = 105/289 (36%), Gaps = 32/289 (11%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFE---SYFDQIIRKSGDFDYRKITTKHIRSGV--- 123 TL+ L + + + + F G +++ + + Sbjct: 20 TLRQLAESWLAHLVVAGRSARTAQGYGERVRAFLAWCEPRGITYAPQVSLAVLEAYQRWL 79 Query: 124 ------ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI-RPWTK 176 + ++ +S + L+++R+LF+W +++ ++ +P +E PK + + +++ Sbjct: 80 QGYRRADGKQLVVNSQLHRLSAVRMLFRWLLKRHHILYSPAEQLELPKEERRLPAQVFSE 139 Query: 177 ED----MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTG 230 + +Q + G + R E L SG+R S+ + + + +++ K G Sbjct: 140 AETRRVLQSLDAGTPPGLRNRAILELLWSSGIRRSELAGLLLSDVDFTRGVVNVRRGKGG 199 Query: 231 TIITVEL----PDGFMKLLA------MTPIGKETFFINNDKQKMNATQFSIWF-KAKATK 279 V + + L FI++ + + +A + Sbjct: 200 KDRVVPVGHTALMWLARYLKDVRPRLAQRFDSGHLFISHKGTGLAHGTLTAMAGRAIRSG 259 Query: 280 AGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 A + K+ H R AT + GA + A G + ++ + YT+ A Sbjct: 260 AHLKKAGACHIFRHTMATQMLENGADTRHIQAILGHEKLETTQIYTRVA 308 >gi|119944179|ref|YP_941859.1| phage integrase family protein [Psychromonas ingrahamii 37] gi|119862783|gb|ABM02260.1| phage integrase family protein [Psychromonas ingrahamii 37] Length = 337 Score = 103 bits (256), Expect = 5e-20, Method: Composition-based stats. Identities = 33/238 (13%), Positives = 86/238 (36%), Gaps = 7/238 (2%) Query: 94 SFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH--TPSSAIQFLTSMRVLFKWAVRQE 151 S + G K+T + +++ ++ + P++ ++ ++ L+++ + Sbjct: 80 SKHQRLRYWVSVFGSLKVGKVTRQQVKAELKRLSNDKAPATLNRYKAALGSLYRYLSDEF 139 Query: 152 YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY--SGLRCSDS 209 + NP + + R + E++ + + +L L+ +G R S+ Sbjct: 140 DIDYNPVKGIRQYTENDARTRFLSDEELSILFAMVKQSKWDQLFLLVLMAITTGARRSEM 199 Query: 210 CRAGVQHL--QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNAT 267 + + + K G + L + L F + D + Sbjct: 200 LTLEWDDINFKTKTAHLPNTKNGEQRILTLTGDVITELMKYRCIGGYVFPHPDDPTIYFR 259 Query: 268 QFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 F I +++ + + + H +R A++ A GA+ E+ G K++ + Y+ Sbjct: 260 NFDIHWQSALREGEITDFRFHDLRHTCASLLAMNGASLLEIAQVLGHKSITMTQRYSH 317 >gi|298695304|gb|ADI98526.1| probable integrase [Staphylococcus aureus subsp. aureus ED133] Length = 390 Score = 103 bits (256), Expect = 5e-20, Method: Composition-based stats. Identities = 64/385 (16%), Positives = 127/385 (32%), Gaps = 62/385 (16%) Query: 17 RHGKIIYYFRK---GHGRRIRLPYPHESTF----IPAYMSALTGSTPKREYINSPRKKPT 69 + G + +R + Y S F + + + + +P + Sbjct: 6 KRGNT-WRYRISLGKDAETGKYKYISNSGFKRKSDAKHHAEMVERQLRNGEYIAP--STS 62 Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129 T K + ++ K + V+S + E I + + + I + V Sbjct: 63 TFKQVADDWLKQYA-NEVKVSSVRAREKAIHHAIERFNNKPIQTINKHEYQRFVNDISAQ 121 Query: 130 PSSA--IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK--------TEGIRP-WTKED 178 S + S ++FK+A + + I P ++RPK+K TE + K++ Sbjct: 122 YSKNYVDSIIASTNMIFKYAYDMKLIRILPSEGIKRPKKKVSVEELEDTEIHKKFLEKDE 181 Query: 179 MQQFKSFWSEGSQPRLAFEF---LLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQ------ 227 + QF P+ +FE L Y+G+R + + NN +I Sbjct: 182 LFQFLEVAKNHHSPQNSFEVFCTLAYTGMRAGELLALKWSDIDFENNTINITKTYYNPNN 241 Query: 228 ----------KTGTII-TVELPDGFMKLLAMTPIG------------KETFFINNDKQKM 264 KT + I + + +KLL + F + + + Sbjct: 242 NKKQYQVLTPKTESSIGKIPVDPHVIKLLKNYKVDVQDTWKNELYVDNNFVFTDVNGYPL 301 Query: 265 NATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE- 320 + +W KA K + S H R + +AG E+ K ++ Sbjct: 302 VIKKLQLWIKAILKKTDITNKQISTHSFRHTHCALLIEAGVHIKEIQERLRHKDINTTMN 361 Query: 321 TYTKGADRIRLGIKNSRRISSVVDS 345 Y K + + S++ S +++S Sbjct: 362 IYAKITNSYKK--DASQKFSKLMES 384 >gi|262184376|ref|ZP_06043797.1| site-specific tyrosine recombinase XerC [Corynebacterium aurimucosum ATCC 700975] Length = 292 Score = 103 bits (256), Expect = 5e-20, Method: Composition-based stats. Identities = 40/265 (15%), Positives = 85/265 (32%), Gaps = 21/265 (7%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE---SRKHTPSSAIQFLTSMR 141 + + + S + + + + T +R + + + S+ + ++R Sbjct: 20 RGRSEATVRGYCSDLRLLAPEVPE--FAAFTLNSLREWLAHAVAEGKSRSTLARRTAAVR 77 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM-----QQFKSFWSEGSQPRLAF 196 WA R+ Y+ + + PK + + + Sbjct: 78 AFSTWAAREGYLESDVAQRLATPKVGKHLPTVMSPTAAGELMGNAVSTDEVHFLRDSAML 137 Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLAM-------- 247 EFL +G+R ++ V + + + + T K V D L Sbjct: 138 EFLYATGVRVAELVGLDVGDIDLSRRTARVTGKGNKQRVVPFGDAAHDALCAWLKTGRPE 197 Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHE 306 E F+ +++A Q + A G + HG+R +AT + GA Sbjct: 198 LAGETEAVFVGTRGGRIDARQVRRVVERAAQVTGAPGLTPHGLRHSAATHLLEGGADLRI 257 Query: 307 LMATYGWKTVDQAETYTK-GADRIR 330 + G ++ + YT A R++ Sbjct: 258 VQELLGHSSLQTTQVYTHVSAQRLK 282 >gi|253699016|ref|YP_003020205.1| integrase family protein [Geobacter sp. M21] gi|251773866|gb|ACT16447.1| integrase family protein [Geobacter sp. M21] Length = 439 Score = 103 bits (256), Expect = 5e-20, Method: Composition-based stats. Identities = 57/351 (16%), Positives = 112/351 (31%), Gaps = 49/351 (13%) Query: 19 GKIIYYFRKGHGRRIRLPYPHES-TFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISE 77 GK Y G + L E+ A + A T +++ R+K T+ L +E Sbjct: 50 GKKR-YMWLGSYPAVPLAAAREACEVARAKVKAGTDPLAQKDAELEERRKAPTVADLCAE 108 Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT--PSSAIQ 135 Y + H + + + ++ + G R IT + + +E P A Sbjct: 109 YLE-RHAKQFKRSWQKDEQMIKRDVLPEWGKRKARDITKRDVVLLLEKIMDRGAPIQANT 167 Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF---KSFWSEGSQP 192 +R +F +AV ++ + PC V+ P K R ++ + + F ++ Sbjct: 168 TFALIRKMFNFAVERDVLEHTPCHGVKPPAPKVARDRVLSESETRSFWHNLDACCMSNET 227 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLLAMT-- 248 R A + +L + R + ++ + + K V L ++LA Sbjct: 228 RRALKLVLVTAQRPGEVIGMHTDEIKGEWWILPGDRVKNKKSHRVYLSTLAREILAEAVA 287 Query: 249 --------PIGKETF-------------------FINNDKQKMNATQFSIWFKAKATKAG 281 P +E I + + + FK + G Sbjct: 288 ENKEKLGIPGDQEYRGFMFPSPQLAKVQPIAPQALIVAVGRALASPVLDPNFKRVLDREG 347 Query: 282 ----------VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 + + H +R+ +AT A++G + A Y Sbjct: 348 KPVTVNRLEVAHFTPHDLRRTAATFMAESGEMDEVIDAVLNHAKQGVIRVY 398 >gi|119961787|ref|YP_948168.1| tyrosine recombinase XerC [Arthrobacter aurescens TC1] gi|119948646|gb|ABM07557.1| putative tyrosine recombinase XerC [Arthrobacter aurescens TC1] Length = 311 Score = 103 bits (256), Expect = 5e-20, Method: Composition-based stats. Identities = 43/299 (14%), Positives = 104/299 (34%), Gaps = 31/299 (10%) Query: 68 PTTLKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIR---KSGDFDYRKITTKHIRSGV 123 P L+ + +R+ + + ++ ++ S + ++ + G + R++ +R + Sbjct: 10 PGPLQKAVDGFRRYLEGECARSAHTVRAYLSDVESLLGFAVQEGVQELRQLELGSLRRWL 69 Query: 124 ESRKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 ++ ++ + + R WA+R+E + +P + ++ PKR ++ + Sbjct: 70 GAQSEAGMARATLARRAATARSFTGWALREELIETDPAVRLQAPKRDKSLPGVLQQQQVS 129 Query: 181 QFKSFW--------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT- 231 + + R E L +G+R + + L + +++ G Sbjct: 130 RMVDDLNTAAADGGPMALRNRAMVELLYATGVRVGELAGLDIDDLDPDRRTVRVLGKGNK 189 Query: 232 --------IITVELPDGFMKLLAM--TPIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281 V + D + F+ +++ Q G Sbjct: 190 ERTVPFGVPAAVAVDDWLRRGRPAVVGATSGPALFLGVRGNRVDPRQIRAVVSELLQALG 249 Query: 282 VNKSA---HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNS 336 + SA H +R +AT D GA + G ++ + YT DR+R + + Sbjct: 250 -DTSATGPHALRHSAATHLLDGGADLRAVQEILGHSSLATTQIYTHVSVDRLRKSYQQA 307 >gi|302534721|ref|ZP_07287063.1| phage integrase [Streptomyces sp. C] gi|302443616|gb|EFL15432.1| phage integrase [Streptomyces sp. C] Length = 422 Score = 103 bits (256), Expect = 5e-20, Method: Composition-based stats. Identities = 51/361 (14%), Positives = 110/361 (30%), Gaps = 66/361 (18%) Query: 51 LTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDF 109 L +T+ ++ + S L N+ + + +I G Sbjct: 56 LAEKIADSNRGLPVATADSTVGDYLTYWLGSVAVHRLRENTHTRYAACVRLHLIPGLGTK 115 Query: 110 DYRKITTKHIRSGVESRKHT---------------------------PSSAIQFLTSMRV 142 ++T K +R+ ++ + T + + ++ Sbjct: 116 KVARLTAKDVRTFLDRLRTTCQCCTQGLDTERKRCCAIGECCQKQLSALTVTYVHSVLKS 175 Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS 202 + AVR++ + N +V+ + RP T + +QF + + +E L + Sbjct: 176 ALEHAVREDELPRNVARNVKTTTHQPRRFRPLTAAEARQFLD-AARADRLHALYELALRT 234 Query: 203 GLRCSDSCRAGVQHLQ-----------------NNIFSIKTQKTGTIITVELPDG----F 241 GLR + + L + + T+ + + LP Sbjct: 235 GLRKGELLGLHWEDLDLTTGTASIHRSLQRTRTGGLTHLPTKTRASERRIALPTECLHSL 294 Query: 242 MKLLAMTPIGKET----------FFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVR 290 + +ET F ++ + F++ +AG+ + H +R Sbjct: 295 KEHKGRQDKERETAESAWQDSGLVFTTPTGGPLDPANLTRRFRSFLDRAGLRRIRFHDLR 354 Query: 291 KFSATISADAGATAHELMATYGWKTVD-QAETYTKGADRIRLGIKNSRRISSVVDS--DD 347 +AT+ + G + G + A Y R+RL + + S DD Sbjct: 355 HSTATLLLEQGVDLVVIKELLGHAHIGVTAGVYAHV--RLRLQRDAIDTLGHAIGSQEDD 412 Query: 348 P 348 P Sbjct: 413 P 413 >gi|254459169|ref|ZP_05072591.1| phage integrase [Campylobacterales bacterium GD 1] gi|207084062|gb|EDZ61352.1| phage integrase [Campylobacterales bacterium GD 1] Length = 277 Score = 103 bits (256), Expect = 5e-20, Method: Composition-based stats. Identities = 36/255 (14%), Positives = 82/255 (32%), Gaps = 23/255 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLF 144 +L+ S +++ I + + + + S + K+ + + L+++ F Sbjct: 22 RALSKKSVEAYKGDLSSIEDEL-QIPLINLESNSVLSFLSKYKNK-RTLNRKLSAINAFF 79 Query: 145 KWAVRQEYVAINPCLSVERP--KRKTEGIRPWTKEDMQQF-----KSFWSEGSQPRLAFE 197 + + + + K + + +++Q ++ W G + Sbjct: 80 DFCYK----SHFSAEKTKYKFAKIPKLLPKFLSYKEIQNSLLLIDRNSW-LGLRDYALII 134 Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL----PDGFMKLLAMTPIGKE 253 FL SG R S+ + +++ I+ K V + D L P E Sbjct: 135 FLFASGARISECLALRREDIEDGWLHIRHAKGEKERIVPVAKVALDAISTYLNEKPKENE 194 Query: 254 TFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGW 313 + N ++ + +N S H +R AT GA + G Sbjct: 195 YVWCNYKGDALSRISAYKITQKY-----LNVSPHVLRHSYATSLISGGADLRVVQELLGH 249 Query: 314 KTVDQAETYTKGADR 328 ++ + YT + Sbjct: 250 ASLLTTQIYTHIQKQ 264 >gi|186686835|ref|YP_001870028.1| phage integrase family protein [Nostoc punctiforme PCC 73102] gi|186469187|gb|ACC84987.1| phage integrase family protein [Nostoc punctiforme PCC 73102] Length = 335 Score = 103 bits (256), Expect = 5e-20, Method: Composition-based stats. Identities = 54/300 (18%), Positives = 107/300 (35%), Gaps = 35/300 (11%) Query: 60 YINSPRKKPTTLKWL-ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH 118 + R+ PT ++W+ + E+ +S +LA NSR +E + + + Y ++ +H Sbjct: 25 QLGETRRPPTDIRWVKVLEFLRS---NNLAPNSRKLYERELKRFLA-WSELHYHELRPRH 80 Query: 119 I-------RSGVESRKHTP---SSAIQFLTSMRVLFKWA--VRQEYVAINPCLSVERPKR 166 + R + + P SS + +++ FKW E ++ NP L ++ K Sbjct: 81 LALYKEYLRDEIRTDAGKPLSKSSINAGIAALKSFFKWMCYTYPEIISTNPTLGIKLEKV 140 Query: 167 KTEGIRPWTKEDMQQFKSFWSE--GSQPR-LAFEFLLYSGLRCSDSCRAGVQHLQNNIFS 223 + T E+M+Q S ++ R A +L GLR + + V + Sbjct: 141 PLPPAQSLTPEEMEQVWSALELLGETKQRDTALVHILSHGLRAGEVVQLNVGSFDGKLLF 200 Query: 224 IKTQKTGTIITVELPDGFMKLLAM----------TPIGKETFFINND----KQKMNATQF 269 + KT V L ++LA I++ ++++ Sbjct: 201 LPDTKTNEPRLVPLKKESREVLAQYLLTRQQSGEVLTSLSPLMISHHASYKGERLSYHGI 260 Query: 270 SIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 + A + + H R AT G G ++ YT +++ Sbjct: 261 YFAVEKIGEIALIEDLHPHSFRHTYATDLLLLGVDPSHARKLTGHQSEKAFRRYTLRSEQ 320 >gi|329926877|ref|ZP_08281280.1| site-specific recombinase, phage integrase family [Paenibacillus sp. HGF5] gi|328938864|gb|EGG35237.1| site-specific recombinase, phage integrase family [Paenibacillus sp. HGF5] Length = 343 Score = 103 bits (256), Expect = 5e-20, Method: Composition-based stats. Identities = 53/312 (16%), Positives = 100/312 (32%), Gaps = 43/312 (13%) Query: 56 PKREYINSPRKKPT-TLKWLISEYRKSAHWGSLAVNSRISFESYF----DQIIRKSGDFD 110 + + IN+ + P TL+ + + L + +E ++ + + + Sbjct: 5 KRTKRINTDKSYPQLTLEQALDMAISAKRAEGLRKRTIRDYEKHYGYFVKWLRVNHPEAE 64 Query: 111 Y-RKITTKHIRSGVESRKHTPS--------------------SAIQFLTSMRVLFKWAVR 149 Y ++ +R V KH + L +++ LF R Sbjct: 65 YIEDVSAAILRDFVLYMKHDARRYDGHKYINSDKQRIGLEDTTINIRLRTLKALFNQLER 124 Query: 150 QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRLAFEFLLYSGLR 205 E + +NP V+ ++ + T E++ + G + +A +L SGLR Sbjct: 125 DELIEVNPAGPVKLLRQDVDLTNGLTDEEVTAILAQPDRRDFVGFRDYVAICLMLDSGLR 184 Query: 206 CSDSCRAGVQHLQ--NNIFSIK--TQKTGTIITVELPDGFMKLLAMTPIGK------ETF 255 S+ + ++ K V + KLL + Sbjct: 185 ISEMLSLRAADIDFQTRFITLPGDRNKNRKPRLVPISAQVTKLLLQLIDENRAHFTTDRL 244 Query: 256 FINNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKFSATISADAGATAHELMATYG 312 F++ + A F+ K KAG+ +AH R A GA L G Sbjct: 245 FLSCYGDPVTANHFNKRLKYYGEKAGIEGKKMTAHVYRHTWARSMVLNGADLFTLQKMGG 304 Query: 313 WKTVDQAETYTK 324 W+ V Y + Sbjct: 305 WQDVRTMRRYVQ 316 >gi|332182173|gb|AEE17861.1| integrase family protein [Treponema brennaborense DSM 12168] Length = 445 Score = 103 bits (256), Expect = 5e-20, Method: Composition-based stats. Identities = 53/347 (15%), Positives = 108/347 (31%), Gaps = 50/347 (14%) Query: 20 KIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYR 79 + Y + +P F+ + K Y+ K ++ +Y Sbjct: 96 RNYLYSAVPKTSKGSIPI---EDFLENFWD-----YDKSPYVREKLGKKQSIH---RQYC 144 Query: 80 KSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV---ESRKHTPSSAIQF 136 + L +R I R +G +IT K + + E++K P + Sbjct: 145 AT-----LLSRTR------LYWIPRLAGKC-VAEITRKDVDAFFSSDEAQKLAPKTVNSI 192 Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF 196 + ++ + KWA E N + + ++ + E + + + ++A Sbjct: 193 IETITIPLKWAYYNELTQNNCFDGIIKCSNISKKRKILDMETATKLMELDWDNDEAKIAN 252 Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ----------KTGTIITVELPDG------ 240 E +++G+R + V L + ++ K G +V +P Sbjct: 253 ELAMHTGMRAGEIQALTVDDLGEDEIYVRRSWSKYDGLKCCKNGEERSVPIPISHQLYLK 312 Query: 241 FMKLLAMTPIGKETFFI-NNDKQKMNATQFSIWFKAKATKAGV----NKSAHGVRKFSAT 295 L P F + M++ QF+ + K G + H R F + Sbjct: 313 LKMLAEFNPHDNGFIFYSTVPDKPMDSKQFNKYLKRALKDIGFENPEDICFHSWRHFFCS 372 Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADRIR---LGIKNSRRI 339 D +MA G KT Y + + L +++ Sbjct: 373 RMLDYVQDKRYIMALSGHKTEAMLNHYAAHLEDEKVVNLARSVMKKV 419 >gi|300770362|ref|ZP_07080241.1| phage integrase family site-specific recombinase [Sphingobacterium spiritivorum ATCC 33861] gi|300762838|gb|EFK59655.1| phage integrase family site-specific recombinase [Sphingobacterium spiritivorum ATCC 33861] Length = 419 Score = 103 bits (256), Expect = 5e-20, Method: Composition-based stats. Identities = 82/388 (21%), Positives = 154/388 (39%), Gaps = 50/388 (12%) Query: 1 MTPSLRLPP-FVTKER---TRHGKIIYYFRKGHG---RRIRLPYPHESTFIPAYMSALTG 53 ++ + +PP + KER ++ KI Y R + R+R+ + A S T Sbjct: 37 LSLQISVPPLYWDKERECIKKNNKIKGYVRLNNFIDNERVRMKN----QLVEAEQSDRTL 92 Query: 54 STPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR--KSGDFDY 111 S+ K + I ++P + +Y+K+ S +V +++ +++ R KS + Sbjct: 93 SSKKIKDIIKGEEEPDFFE-FAEQYQKTIE-SSESVRLYNQYKAILNKLERFNKSRQLKF 150 Query: 112 RKITTKHIRSGVESR----KHTPSSAIQFLTSMRVLFKWAVRQEYV--AINPCLSVERPK 165 +IT +++ E K+ ++ L +R L+ A +E V NP ++ + Sbjct: 151 SEITVSYLKRFSEHLATECKNRTNTISTNLKVIRKLYNLATLEEVVPEERNPFKKLK-LE 209 Query: 166 RKTEGIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSG-LRCSDSCRAGVQHL-QN 219 + I TKED+ + + + R F F +Y+G LR SD + + + Sbjct: 210 WEKTNIGYLTKEDIDKIRHVELDPMGKDYHIRNMFVFAMYTGGLRFSDLLMLRWEDVQDD 269 Query: 220 NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET-------FFINNDKQKMNATQFSIW 272 + TQKT T +TV+L + + +L++ T F++NDK N Sbjct: 270 ERVKVYTQKTKTNLTVKLTNVSLAILSIYRPSTYTNASGFIFPFLDNDKNYSNPKYLYRR 329 Query: 273 F-----------KAKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQA 319 + K+G+NK H R AT + G + G +V Sbjct: 330 ISSINAVANTRLREIGKKSGINKHLHFHMSRHTFATRGLEIGMPLTHISKLMGHSSVAMT 389 Query: 320 ETYTKGADRIRLGIKNSRRISSVVDSDD 347 E Y K ++ K I ++++ Sbjct: 390 ENYAKLINKEL--DKAMDLIDKYEEANN 415 >gi|167829962|ref|ZP_02461433.1| phage integrase family protein [Burkholderia pseudomallei 9] gi|226199441|ref|ZP_03794999.1| phage integrase family protein [Burkholderia pseudomallei Pakistan 9] gi|225928517|gb|EEH24546.1| phage integrase family protein [Burkholderia pseudomallei Pakistan 9] Length = 350 Score = 103 bits (256), Expect = 5e-20, Method: Composition-based stats. Identities = 43/282 (15%), Positives = 100/282 (35%), Gaps = 19/282 (6%) Query: 61 INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120 I + TT+ + Y + + +++ + ++ G + +T + Sbjct: 51 IQRAPSEKTTVADALDRYEREIV-PTKKTSTQRREGARIRELKAHFGKYSLAAVTPDLVG 109 Query: 121 SGVESRKHTPSSAIQF---LTSMRVLFKWAVRQEYVAI--NPCLSVERPKRKTEGIRPWT 175 + R + L + LF A+++ ++ + NP ++ +P+ R + Sbjct: 110 RYRDDRLAQGKANNTVRLELALLGHLFNVAIKEWHIGLVYNPVANIRKPRPGEGRNRRLS 169 Query: 176 KEDMQQFKSFWSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGT 231 + + + + P L + +G+R S+ + + + K Sbjct: 170 GREQALLLAAIDKHTNPMLGWIVRLAIETGMRQSEIVGLRRGQIDLERRVVRLTDTKNNA 229 Query: 232 IITVELPDGFMKLLA------MTPIGKETFFINNDKQ--KMNATQFSIWFKAKATKAG-V 282 TV L +L + PI + F + K A QF+ + A + G + Sbjct: 230 ARTVPLTKLAASVLQSALANPIRPIDTDLVFFGEPGRDGKRRAYQFTKVWNAIKKQTGLI 289 Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 + H +R + + +AG + E+ + G K++ YT Sbjct: 290 DFRFHDLRHEAVSRLVEAGLSDQEVASISGHKSMQMLRRYTH 331 >gi|86741839|ref|YP_482239.1| tyrosine recombinase XerD [Frankia sp. CcI3] gi|86568701|gb|ABD12510.1| Tyrosine recombinase XerD [Frankia sp. CcI3] Length = 443 Score = 103 bits (256), Expect = 5e-20, Method: Composition-based stats. Identities = 52/333 (15%), Positives = 98/333 (29%), Gaps = 56/333 (16%) Query: 69 TTLKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYRKITT------KHIRS 121 T +I Y LA NS +++ + + + Sbjct: 87 GTPAGVIERYLHHLEGERGLARNSVLAYRRDLRRYCDHLSACGLPSLDAVGEAEVAGFAA 146 Query: 122 GVESRKHT-----PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176 + + T +S + L ++R L ++A + V + V P + + Sbjct: 147 VLRTGDDTHPPLAAASVARMLVAVRSLHRFAADEGDVPEDVSRPVRPPTPPRRLPKALSI 206 Query: 177 EDMQQFK-----------------------------SFWSEGSQPRLAFEFLLYSGLRCS 207 + + + + E L +G R S Sbjct: 207 DQVVAVLAAAAGAPPPGSPPPSGRPQPSGRPQPVEPAEAVRRLRATALLELLYGTGARIS 266 Query: 208 DSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLA----------MTPIGKETFF 256 ++ V L S++ K G V L + +A + P F Sbjct: 267 EAVGLDVDDLDLEAASVRLHGKGGRDRIVPLGRYAIAAVADYLRVGRPTLVAPRSGPAVF 326 Query: 257 INNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKT 315 ++ +++ + A AGV S H +R AT D GA + G + Sbjct: 327 LSRRGNRLSRQSAWSVLRTAALAAGVEGVSPHVLRHSFATHLLDGGADVRVVQELLGHAS 386 Query: 316 VDQAETYT-KGADRIRL--GIKNSRRISSVVDS 345 V + YT DR+R + R + + + S Sbjct: 387 VSTTQIYTLVTVDRLREVYAASHPRALGAALGS 419 >gi|312897736|ref|ZP_07757152.1| site-specific recombinase, phage integrase family [Megasphaera micronuciformis F0359] gi|310621120|gb|EFQ04664.1| site-specific recombinase, phage integrase family [Megasphaera micronuciformis F0359] Length = 361 Score = 103 bits (256), Expect = 5e-20, Method: Composition-based stats. Identities = 60/356 (16%), Positives = 115/356 (32%), Gaps = 56/356 (15%) Query: 1 MTPSLRLP--PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKR 58 M+ + P +V T +GK Y++ + A K+ Sbjct: 1 MSKIKKRPDGRYVMTFTT-NGKRRYFYGRTRSE----------------AQAKYDEFIKK 43 Query: 59 EYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTK 117 + T+ E+ + S+ ++ S+ + I+ + G +T Sbjct: 44 SENLANFDGNITIAEWAKEWLRIKE-PSITPSTLDSYRNVIRHYIVPEIGTIKLVDLTAP 102 Query: 118 HIRSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK-RKTEGIRPW 174 IR + + T + T + + K AV E +A N V +PK +T+ + Sbjct: 103 TIRRLLTIKMETLSSRTVRYIHTLLNAMLKQAVLDEIIATNAAAKVRKPKLHRTKEMVTL 162 Query: 175 TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-------------- 220 T ++++ F S L F+ SGLR S+ ++ + Sbjct: 163 TADEVKLFLSKIPIPEHHML-FKLAFASGLRRSELLGLPWSNVDLDKKTITITQTVIKID 221 Query: 221 ---IFSIKTQKTGTIITVELPDG-----------FMKLLAMTP--IGKETFFINNDKQKM 264 + S T+ + ++ L D +P + + F D + + Sbjct: 222 NEAVISETTKNASSRRSITLDDETIAELKKHAQRVKATRLASPNWVHNDLVFPGKDGKPI 281 Query: 265 NATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319 S K A + G S HG R AT+ +AG + G + + Sbjct: 282 FPDSVSQLCKRYAAQIGKPSFSMHGTRHTHATLLIEAGVNFKVIQVRLGHSSFTET 337 >gi|91214773|ref|ZP_01251746.1| tyrosine type site-specific recombinase [Psychroflexus torquis ATCC 700755] gi|91187200|gb|EAS73570.1| tyrosine type site-specific recombinase [Psychroflexus torquis ATCC 700755] Length = 379 Score = 103 bits (256), Expect = 5e-20, Method: Composition-based stats. Identities = 36/253 (14%), Positives = 91/253 (35%), Gaps = 20/253 (7%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR----SGVESRKHTPSSAIQFLTSM 140 + N+ +++S + + + +T + I + K + S+ + ++ Sbjct: 105 KGFSKNTVDNYKSSLKPFFKYFENQSLKSVTKEQIEGYVFELISKYKISESAQNTIINAI 164 Query: 141 RVLFKW--AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEF 198 + ++ + +EY ++ RPK+ + ++++ + + + Sbjct: 165 KCYYEHTLGLPREY------YNITRPKKSQDLPNILHINEVRRIINS-PSNLKHKTILHT 217 Query: 199 LLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMT-PIGKETF 255 + +GLR + R V ++ IK K L ++LL I K + Sbjct: 218 IYGAGLRVGELIRLRVVDIRSEEGYIFIKDSKGKKDRHTVLSKHLLELLREYYKIYKPAY 277 Query: 256 FINND--KQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATY 311 ++ + ++T ++ + N + H +R AT + G + + A Sbjct: 278 WLFEGQTGGQYSSTSIQSIYRKAVKETNGNPWSTPHTLRHSFATHLMERGTSLRHIQAAL 337 Query: 312 GWKTVDQAETYTK 324 G + E YT+ Sbjct: 338 GHNSSKTTEIYTR 350 >gi|325509244|gb|ADZ20880.1| site-specific recombinase, phage integrase family [Clostridium acetobutylicum EA 2018] Length = 328 Score = 103 bits (256), Expect = 5e-20, Method: Composition-based stats. Identities = 43/224 (19%), Positives = 84/224 (37%), Gaps = 21/224 (9%) Query: 132 SAIQFLTSMRVLFKWAV-RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 + + + ++R FK+ + + + NP L +E P T E+ Q + Sbjct: 99 ARARKIAALRSFFKYISGKAKIIKENPTLELESPSLPKRNPIYLTLEESQALLNSIDGPF 158 Query: 191 QPR--LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA-- 246 + R L GLR S+ + ++ + +I K T+ L + +K + Sbjct: 159 KERDYCIITLFLNCGLRLSELVSIDISKIKGDTLTI-LGKGNKERTIYLNEMCLKAIEDY 217 Query: 247 ----------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKFS 293 + K+ FI+ ++N + K A KA ++ + H +R + Sbjct: 218 IPVRNQKASSIKIEDKDALFISRKLTRINQRTIELMVKKYALKANLDYEKLTPHKLRHTA 277 Query: 294 ATISADAG-ATAHELMATYGWKTVDQAETYTKGADR-IRLGIKN 335 AT+ G L G ++V + YT D +R +K+ Sbjct: 278 ATLMYKYGNVDIRSLQQILGHESVSTTQIYTHIDDENLRKAVKS 321 >gi|260425750|ref|ZP_05779730.1| site-specific recombinase, phage integrase family [Citreicella sp. SE45] gi|260423690|gb|EEX16940.1| site-specific recombinase, phage integrase family [Citreicella sp. SE45] Length = 308 Score = 103 bits (256), Expect = 5e-20, Method: Composition-based stats. Identities = 43/277 (15%), Positives = 90/277 (32%), Gaps = 28/277 (10%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQII--------RKSGDFDYRKITTKHIRSGVES 125 + + SA A N+ ++ + + I G ++TT +R+ + Sbjct: 13 LENWLASARALKGAAENTITAYRADVLEFIVFLTTHHAEPQGLKPLARVTTPDMRAFMAH 72 Query: 126 RK---HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK------ 176 + P S + L++++ ++W +E + PK + + RP + Sbjct: 73 LRGQGAAPRSMARKLSAVKSFYRWLAEREGFEPTAVIMARAPKFQKKLPRPLDESAARAM 132 Query: 177 -EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235 E ++ + G++ L GLR S++ + T K G V Sbjct: 133 IETVEMQSADSWIGARDAAVVTLLYGCGLRISEALGLRGRDWPMGESLRITGKGGKERIV 192 Query: 236 ELPDGFMKLLAM-------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA-- 286 + + + P + F +N + + G+ +A Sbjct: 193 PVLPVARDAVGIYLQLCPFEPEPEAPIFRGARGGALNPRLIQKVTEKARLQLGLPATATP 252 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 H +R AT AG + G ++ + YT Sbjct: 253 HAMRHSFATHLLAAGGDLRAIQELLGHASLSTTQAYT 289 >gi|116328183|ref|YP_797903.1| tyrosine site-specific recombinase XerC [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116330907|ref|YP_800625.1| tyrosine site-specific recombinase XerC [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116120927|gb|ABJ78970.1| Tyrosine site-specific recombinase XerC [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116124596|gb|ABJ75867.1| Tyrosine site-specific recombinase XerC [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 311 Score = 103 bits (256), Expect = 5e-20, Method: Composition-based stats. Identities = 45/260 (17%), Positives = 93/260 (35%), Gaps = 22/260 (8%) Query: 85 GSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGVE----SRKHTPSSAIQFLT 138 + + N+ ++ + D ++ IRS + S + L+ Sbjct: 31 KNYSQNTINAYSIDLKFFFEFCEKEQLDILQVEPVDIRSYFSYLAKEQDLDRRSQSRKLS 90 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS------QP 192 S+R +K +R + + NP + PK + E + + + ++ F +E + + Sbjct: 91 SLRTFYKVLLRDDQIESNPATRISFPKVRKEVPKNFRINETEEILEFEAERTSEILEIRD 150 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT--------VELPDGFMKL 244 + E L SGLR + A + L ++ +K G V+ +++ Sbjct: 151 KAMIEVLYSSGLRVFELVNAKLGSLSKDLTVLKVLGKGQKERFVYFGKEAVDSLRRYLEY 210 Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302 ++ + F+N +K+ + K G K + H R AT DAGA Sbjct: 211 RNVSFPDVKEIFLNQKGKKLTTRGVRYILNERRKKMGWEKKITPHKFRHTFATDLLDAGA 270 Query: 303 TAHELMATYGWKTVDQAETY 322 + G ++ + Y Sbjct: 271 DIRAVQELLGHSSLSTTQIY 290 >gi|159901675|ref|YP_001547921.1| integrase family protein [Herpetosiphon aurantiacus ATCC 23779] gi|159894714|gb|ABX07793.1| integrase family protein [Herpetosiphon aurantiacus ATCC 23779] Length = 291 Score = 103 bits (256), Expect = 5e-20, Method: Composition-based stats. Identities = 39/260 (15%), Positives = 82/260 (31%), Gaps = 25/260 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQF---LTSMR 141 L+ ++ ++ Q+ + R + R + R SA L ++R Sbjct: 16 RGLSAQTQSAYVQAVRQLAQYFNTPPDRLSDDQLRRYFLYLRTEKQVSASTITVTLCAIR 75 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY 201 L++ +++ + P L RP + ++++++ R+ + Sbjct: 76 FLYQHTLQRSW----PLLDALRPPKAQPLPVVLSRDEVRAILHQVRTPRH-RVCLSIIYA 130 Query: 202 SGLRCSDSCRAGVQHLQNNIF--SIKTQKTGTIITVELPDGFMKLLAMTPIGKET----- 254 GLR + R V ++ + I+ K + LP + +L + Sbjct: 131 CGLRLMEGVRLQVCNIDSARLMLHIQHGKGNKDRYIPLPPPALAMLRAHWRSHQHPRWLF 190 Query: 255 --------FFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATA 304 I M+ F +G+ K + H +R AT +AG Sbjct: 191 PSHWVDKALPIAARSVSMSRDGVQRAFLLACQASGMRKHATVHTLRHSWATHLLEAGVNL 250 Query: 305 HELMATYGWKTVDQAETYTK 324 + G + YT Sbjct: 251 RIIQGWLGHTSPTTTAHYTH 270 >gi|110806562|ref|YP_690082.1| putative integrase [Shigella flexneri 5 str. 8401] gi|110616110|gb|ABF04777.1| putative integrase [Shigella flexneri 5 str. 8401] Length = 319 Score = 103 bits (256), Expect = 5e-20, Method: Composition-based stats. Identities = 42/235 (17%), Positives = 82/235 (34%), Gaps = 11/235 (4%) Query: 52 TGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDY 111 +G K TL + Y K + + I++ S I R D Sbjct: 59 SGHKHKPLTARINSDNSVTLHSWLDRYEKILASRGIKQKTLINYMSKIKAIRRGLPDAPL 118 Query: 112 RKITTKHIRSGVESRKH--TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169 ITTK I + + +SA +++ F+ A+ + ++ NP + K + Sbjct: 119 EDITTKEIAAMLNGYIDEGKAASAKLIRSTLSDAFREAIAEGHITTNPVAATRAAKSEVR 178 Query: 170 GIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229 R E ++ +++ S RLA E + +G R D C + + ++ KT Sbjct: 179 RSRLTADEYLKIYQAAESSPCWLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYVEQSKT 238 Query: 230 GTIITVE---------LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKA 275 G I + + +G ET + ++ +++ S + Sbjct: 239 GVKIAIPTTLHVDALGISMKETLDKCKEILGGETIIASTRREPLSSGTVSSIYAR 293 >gi|215412737|ref|ZP_03421449.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis 94_M4241A] gi|298526363|ref|ZP_07013772.1| integrase/recombinase xerC [Mycobacterium tuberculosis 94_M4241A] gi|298496157|gb|EFI31451.1| integrase/recombinase xerC [Mycobacterium tuberculosis 94_M4241A] Length = 298 Score = 103 bits (256), Expect = 5e-20, Method: Composition-based stats. Identities = 42/267 (15%), Positives = 90/267 (33%), Gaps = 26/267 (9%) Query: 86 SLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRKHTPSSA---IQFLTSM 140 +V++R ++ + D +T +RS + + ++ + +++ Sbjct: 17 GRSVHTRRAYLGDLRSLFAFLADRGSSLDALTLSVLRSWLAATAGAGAARTTLARRTSAV 76 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS--------QP 192 + WAVR+ +A +P ++ PK + ++ + + G+ + Sbjct: 77 KAFTAWAVRRVLLAGDPAARLQVPKVRRTLPAELRQDQALRAMAAAESGAEQGDPLALRD 136 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAM---- 247 RL E L +G+R S+ C V + ++ K TV L Sbjct: 137 RLIVELLYATGIRVSELCGLDVDDIDTGHRLVRVLGKGNKQRTVPFGQPAADALHAWLVD 196 Query: 248 ------TPIGKETFFINNDKQKMNATQFSIWFKA--KATKAGVNKSAHGVRKFSATISAD 299 T + ++++ Q A + HG+R +AT + Sbjct: 197 GRRALVTAESGHALLLGARGRRLDVRQARTAVHQTVAAVDGAPDMGPHGLRHSAATHLLE 256 Query: 300 AGATAHELMATYGWKTVDQAETYTKGA 326 GA + G ++ + YT A Sbjct: 257 GGADLRVVQELLGHSSLATTQLYTHVA 283 >gi|62912537|ref|YP_227613.1| putative integrase [Haemophilus phage Aaphi23] gi|273809608|ref|YP_003344846.1| putative integrase [Aggregatibacter phage S1249] gi|31408042|emb|CAD90776.1| putative integrase [Haemophilus phage Aaphi23] gi|261410515|gb|ACX80346.1| putative integrase [Aggregatibacter phage S1249] Length = 348 Score = 103 bits (256), Expect = 5e-20, Method: Composition-based stats. Identities = 43/252 (17%), Positives = 84/252 (33%), Gaps = 15/252 (5%) Query: 83 HWGSLAVNSRISFESY--FDQIIRKSGDFDYRKITT---KHIRSGVESRKHTPSSAIQFL 137 W + + + GD +I K I+ + L Sbjct: 70 QWLDEKPKRKQDRNMLYGLVWLDKYLGDKKLNEIDRTLIKFIQYEKAKEGVKARTINAVL 129 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFE 197 +RV+ + AV +++ P ++ +R T+ + + E +P + F Sbjct: 130 QQIRVILRAAVEWDWLDKCPA--IKFLPEPKRRVRWLTQHEEIRLIEELPEHLKPIVQFA 187 Query: 198 FLLYSGLRCSDSCRAGVQHLQ----NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKE 253 L +GLR S+ + + + + KTG I V L D ++++ + Sbjct: 188 IL--TGLRMSNITQLKWSQIDLSKRQAWINSEQSKTGNSIGVPLNDKAIEVIVSQFGKHK 245 Query: 254 TFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYG 312 + + + F+A +AG+ + H +R AT +G + L G Sbjct: 246 ENVFTYKGKPVRIAN-TKAFRAALQRAGIKDFRFHDLRHTWATRHIMSGTPLYVLQELGG 304 Query: 313 WKTVDQAETYTK 324 W D Y Sbjct: 305 WSKSDTVRKYAH 316 >gi|320353143|ref|YP_004194482.1| integrase family protein [Desulfobulbus propionicus DSM 2032] gi|320121645|gb|ADW17191.1| integrase family protein [Desulfobulbus propionicus DSM 2032] Length = 393 Score = 103 bits (256), Expect = 5e-20, Method: Composition-based stats. Identities = 64/350 (18%), Positives = 124/350 (35%), Gaps = 35/350 (10%) Query: 10 FVTKERTRHGKII-YYFRKGHGRRI--RLPYPHESTFIPAYMSA-------LTGSTPKRE 59 F+ + R+ GK ++ HGR+I ++ TF A +A + G +P E Sbjct: 33 FIVEVRSTGGKTYALRYKDQHGRQIQHKIGDAKSITFDKARNAAKVLRSQVVLGDSP-AE 91 Query: 60 YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFES----YFDQIIRKSGDFDYRKIT 115 S + P TL S + + S+++ + ++ G + +IT Sbjct: 92 QRKSKKDVP-TLAEFC-----SERYIPFIKGYKRSWKNDDSLLRNHLLPPLGTYRMNEIT 145 Query: 116 TKHIRSGVESRKHTP---SSAIQFLTSMRVLFKWAVRQEY--VAINPCLSVERPKRKTEG 170 + + A + L ++ +F A++ E V +NP + V+ T Sbjct: 146 QIMVADLHHGMRANGFASGMANRVLVLLKYIFNLAIKWEVPDVKVNPAVDVK-LYEATAR 204 Query: 171 IRPWTKEDMQQFKSFW--SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-- 226 R + E+ Q+ S+ +Q + LL G R + + + S + Sbjct: 205 ERYLSIEETQRLLEQLEKSKNTQLKYIAPLLLLLGCRKRELLDSRWEEFDLERRSWRIPM 264 Query: 227 QKTGTIITVELPDGFMKLLAMTPI--GKETFFINNDKQKMNATQFSIWFKAKATKAGV-N 283 K+G V L +++L P G N D + W AG+ + Sbjct: 265 SKSGKARHVPLSLSALEILRQLPRWEGCPYVIPNPDTRLPFVQMHRAW-DNARKAAGLPD 323 Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 H +R A+ ++G + +E+ G + + Y + L Sbjct: 324 VRMHDLRHSMASNMVNSGRSIYEVAKVLGHSQLKTTQRYAHLSQETLLAA 373 >gi|34558588|gb|AAQ75061.1| putative integrase [Lactobacillus phage JCL1032] Length = 370 Score = 103 bits (256), Expect = 5e-20, Method: Composition-based stats. Identities = 52/362 (14%), Positives = 126/362 (34%), Gaps = 38/362 (10%) Query: 14 ERTRHGKIIYYFR-----KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68 ++ + GK +Y R G +R+ S + L + + ++ + Sbjct: 10 KKMKSGKYQWYQRYRDPLTGKIKRVTCLLSRGSQQARK-EAELILAQKLADISDARTETN 68 Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG-DFDYRKITTKHIRSGVES-R 126 T+ L + + + + ++ G D + IT + ++S Sbjct: 69 ITIGELSKLFLDHERERGVKPTTLSVRRTGMSAMLNYFGEDAIAKNITKPMVTKYLQSSL 128 Query: 127 KHTPSSAIQFLTS-MRVLFKWAVRQEYVAINPCLSV----ERPKRKTEGIRPWTKEDMQQ 181 K +S + M ++ +A+ Y+ NP + + K + + +T E++ Sbjct: 129 KKKSNSTVHVYRVGMSTMYDFAIDYGYLTENPAKGLRIQWKPQKPTSITDKYFTDEELNN 188 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN------NIFSIKTQKTGTI--- 232 + RL F+F+ +G+R ++ +++ + K+ + Sbjct: 189 LFAVIDRPDYLRL-FKFMYLTGMRFGEATGLQFKNIHDQYADITGTMWANGIKSDSPKTL 247 Query: 233 ---ITVELPDGFMKLL------AMTPIGKETFFINNDKQ-KMNATQFSIWFKAKATKAGV 282 +V LP ++++ + FIN K +++ K K+ +AG+ Sbjct: 248 ASFRSVFLPKQAIEIVEWFKQHDRNAEPDDFIFINQLKHVPFKMNTVALYLKNKSKEAGI 307 Query: 283 NK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRI 339 ++ + H R + A+ G H + G + E Y ++ ++I Sbjct: 308 DRKITTHFFRHTHISKLAEQGVPLHVIQKRVGHIKAETTREIYLHVT--KKMQEDMEKQI 365 Query: 340 SS 341 + Sbjct: 366 ND 367 >gi|312913689|dbj|BAJ37663.1| integrase [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] Length = 336 Score = 103 bits (256), Expect = 6e-20, Method: Composition-based stats. Identities = 56/305 (18%), Positives = 111/305 (36%), Gaps = 19/305 (6%) Query: 26 RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWG 85 R G+RIR + +S AY + + +E+ + P L LI+ + + Sbjct: 24 RGTSGKRIRRKFNRKSE-AQAYEKYVLTNFHDKEWQDKP-ADRRLLSDLIALWW---SYH 78 Query: 86 SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH---TPSSAIQFLTSMRV 142 N S++ ++I R+ G+ ++T + SR H + + + +M Sbjct: 79 GKNHNYGDSYKKRLEKINREMGEPRVYELTRNFLMKYRASRLHDGVSAGTVNRDFCTMSS 138 Query: 143 LFKWAVR-QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY 201 +F+ + +E+ NP V + + + + ++E+++ + R L Sbjct: 139 MFRLLIDMEEFHHENPFHKVRKLRLENTEMSFLSEEEIRDLLMALT--GDDRRVVVLCLN 196 Query: 202 SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK 261 +G R ++ +H+ +N + KTG TV + + GK F N Sbjct: 197 TGARWGEASNLKAEHVISNRVTFVKTKTGPARTVPISQEIADYILTRKSGK--LFDTNY- 253 Query: 262 QKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321 + + ++ H +R AT G L G T++Q T Sbjct: 254 -----ERVRDVLRKVKPDLPRGQALHVLRHTFATHFMINGGNIITLQRILGHTTIEQTMT 308 Query: 322 YTKGA 326 Y A Sbjct: 309 YAHFA 313 >gi|238063996|ref|ZP_04608705.1| tyrosine recombinase xerD [Micromonospora sp. ATCC 39149] gi|237885807|gb|EEP74635.1| tyrosine recombinase xerD [Micromonospora sp. ATCC 39149] Length = 336 Score = 103 bits (256), Expect = 6e-20, Method: Composition-based stats. Identities = 48/281 (17%), Positives = 85/281 (30%), Gaps = 42/281 (14%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKIT-------TKHIRSGVESRKHTP----SSA 133 L+ N+ S+ ++ + D + H+ P SSA Sbjct: 36 RGLSANTLASYRRDLERYLATLTDAGIGDLASVAAGVVEAHLARLRAGDDGHPPLAVSSA 95 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW------- 186 + +++R L ++A+R+ +P V P R + + + Sbjct: 96 ARAASAVRGLHRFALREGLAGADPSRDVRPPAPPRRLPRALAVDQVVRLLETAGPVTAAG 155 Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN----NIFSIKTQKTGTIITVELPD 239 + R EFL +G R S++ A + L + K G V + Sbjct: 156 DGAPLALRDRALLEFLYGTGARISEAVGAAIDDLDGLDTGEATVLLRGKGGRSRLVPVGG 215 Query: 240 GFMKLLAM-----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK---- 284 + L G F+N + + A +AG+ Sbjct: 216 YAAEALRAWLVRGRPALVAAGRGTPAVFVNVRGGTLTRQGAWTILRRAAERAGLPVDGAN 275 Query: 285 --SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 S H +R AT D GA + G +V + YT Sbjct: 276 AVSPHTLRHSFATHLLDGGADVRVVQELLGHASVTTTQVYT 316 >gi|300723768|ref|YP_003713075.1| int (fragment) [Xenorhabdus nematophila ATCC 19061] gi|297630292|emb|CBJ90943.1| Int (fragment) [Xenorhabdus nematophila ATCC 19061] Length = 333 Score = 103 bits (256), Expect = 6e-20, Method: Composition-based stats. Identities = 49/290 (16%), Positives = 100/290 (34%), Gaps = 35/290 (12%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIRSG---- 122 TL+ + + +R + S + + G ++++ + S Sbjct: 5 TLRQHMQHFLDHLDALRYTRETRAHYRSNLREFVRWCDERGITTAQQVSFPQLESWQQHM 64 Query: 123 -----VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW--- 174 R S+ I+ LTS+R LF+W V++ ++ NP + P+R+ PW Sbjct: 65 VAQKNRHGRPIAASTVIKKLTSVRHLFRWLVKRRHLRYNPARELALPRRERRL--PWGML 122 Query: 175 TKEDMQQFKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQK 228 + + ++ + + R E L SG+R S+ R + L + ++ K Sbjct: 123 NEPETRRVLAMTGSDNPLSVRDRAILETLWSSGIRRSELKRLQLSELDLAGGMLFVRQGK 182 Query: 229 TGTIITVELPDGFMKLLAM----------TPIGKETFFINNDKQKMNATQFSIWFKAKAT 278 V L + + F++ + + + Sbjct: 183 GRQDRVVPLGESARHWVQRYLNDVRPRLVWAKDPGYLFLSQQGSALAEGTLTQIVRNALH 242 Query: 279 KAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 +A ++K H R AT GA + A G +++ + YT+ A Sbjct: 243 RADIDKPGGCHLFRHGMATQMLKNGADTRHIQAILGHASLESTQIYTRVA 292 >gi|222151085|ref|YP_002560239.1| tyrosine recombinase XerC protein [Macrococcus caseolyticus JCSC5402] gi|222120208|dbj|BAH17543.1| tyrosine recombinase XerC protein [Macrococcus caseolyticus JCSC5402] Length = 290 Score = 103 bits (256), Expect = 6e-20, Method: Composition-based stats. Identities = 37/260 (14%), Positives = 89/260 (34%), Gaps = 23/260 (8%) Query: 85 GSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGVESRKHT---PSSAIQFLTS 139 + + ++ ++++ Q I + D+R + R+ + S+ + ++ + +++ Sbjct: 17 RNFSDHTVTAYKNDVLQFIAFLEQEQLDFRTFEYRDARNYLVSQYNKGLERTTVSRRISA 76 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQPRLA 195 +R + + + NP + + PK+K + +++M + + + Sbjct: 77 LRSFYGFLYDGD--ESNPFVQLVHPKQKKYLPEFFYEKEMTLLFNSIDMSKPFAVRDKFI 134 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------ELPDGFMKLLA 246 E L +G+R S+ + ++K G + L D +M Sbjct: 135 LEMLYATGMRVSEFIELKSDAFDLGLMTVKVMGKGRKERIIPYGAYAHRSLLD-YMDFRN 193 Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATK--AGVNKSAHGVRKFSATISADAGATA 304 I + IN + A + + A + H +R AT + GA Sbjct: 194 SMTITHDYLLINQRGGPLTARGLTYILDMLIKRSSADGHIHPHKLRHTFATHLLNNGADL 253 Query: 305 HELMATYGWKTVDQAETYTK 324 + G + YT Sbjct: 254 RTVQELLGHVNLSTTSKYTH 273 >gi|237722726|ref|ZP_04553207.1| site-specific recombinase [Bacteroides sp. 2_2_4] gi|293373709|ref|ZP_06620056.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] gi|301311822|ref|ZP_07217744.1| tyrosine type site-specific recombinase [Bacteroides sp. 20_3] gi|317473969|ref|ZP_07933248.1| phage integrase [Bacteroides eggerthii 1_2_48FAA] gi|229448536|gb|EEO54327.1| site-specific recombinase [Bacteroides sp. 2_2_4] gi|292631364|gb|EFF49995.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] gi|300829924|gb|EFK60572.1| tyrosine type site-specific recombinase [Bacteroides sp. 20_3] gi|316909811|gb|EFV31486.1| phage integrase [Bacteroides eggerthii 1_2_48FAA] Length = 381 Score = 103 bits (256), Expect = 6e-20, Method: Composition-based stats. Identities = 47/231 (20%), Positives = 75/231 (32%), Gaps = 15/231 (6%) Query: 117 KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPC---LSVERPKRKTEGIRP 173 +H + +P SA ++ AVR E + NP + ER K Sbjct: 149 QHTYKTRWDKPLSPKSAADYVGYFSTALNAAVRAEVIPENPIMTLAATERIKVPESKREY 208 Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT----QKT 229 T ++++ + A+ F Y GLR SD + + + + QKT Sbjct: 209 LTIDEIKVLIDTECPREDVKRAYLFACYCGLRLSDVYALRWKDIVQDGEQYRMSTVMQKT 268 Query: 230 GTIITVELPDGFMKLL--AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA- 286 T I + L ++ L F + + W AG+NK Sbjct: 269 TTPIYLPLSRHAVRWLPERNGAEDGLHVFAGLPAEPNINKVLAKWM----ATAGINKKIT 324 Query: 287 -HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336 H R AT+ GA + G V + Y K D ++ N Sbjct: 325 YHTSRHTFATMMLTLGADLYTTSKLLGHANVKTTQIYAKIVDSKKVEAVNL 375 >gi|194446257|ref|YP_002041137.1| phage integrase [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194404920|gb|ACF65142.1| phage integrase [Salmonella enterica subsp. enterica serovar Newport str. SL254] Length = 359 Score = 103 bits (256), Expect = 6e-20, Method: Composition-based stats. Identities = 50/287 (17%), Positives = 97/287 (33%), Gaps = 34/287 (11%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--- 126 T+ I Y SL+VN+ + + K G+ ++TT+HI +ES Sbjct: 75 TVSAWIDRYEVLLQRRSLSVNTYKIRSNQLATVREKMGEIILAEVTTRHIAKFLESWITE 134 Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 K+T + A++ + + +F+ A+ + ++ NP + P+ K R ++ + + Sbjct: 135 GKNTMAGAMR--SVLSDMFREAIVEGHIVKNPVEATRIPEIKVARERL----QLETYNAT 188 Query: 186 WSEGSQPRLAF----EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241 + F + L +G R D + +N + KTG I + L Sbjct: 189 RAAAEHMPAWFPLAMDLALVTGQRREDIVNMKFSDVFDNRLYVTQIKTGMKIAIPLSLTL 248 Query: 242 MK--------LLAMTPIGKETFFI------NNDKQKMNATQFSIWFKAKATKAGVNKS-- 285 + + + F I N+ ++ + F +GVN S Sbjct: 249 EAPGLRLGTVIDRCRLVSRTDFMISAGIRKNSPTGNIHPDGLTKTFVKARKASGVNFSNN 308 Query: 286 ---AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 H +R A G + + + Y D Sbjct: 309 PPTFHEIR-SLAGRLYKNEHGEVFAQKLLGHTSANTTKLYLDERDDK 354 >gi|332170984|gb|AEE20239.1| integrase family protein [Krokinobacter diaphorus 4H-3-7-5] Length = 274 Score = 103 bits (256), Expect = 6e-20, Method: Composition-based stats. Identities = 48/268 (17%), Positives = 97/268 (36%), Gaps = 18/268 (6%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129 + +++ R S + + +S+++Y R D + T +R + +++T Sbjct: 4 SFNTILTAKRYSDSTVTTYIGLLVSYQNYLGD-SRPLERLDLSYLIT-TLRDFILKKEYT 61 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 ++ Q ++++ + +K A+RQE L P+R + +++ + Sbjct: 62 FNTQKQLISAVSLYYKEALRQEIDLS--SLRPRSPQRV--LPDILSTYEVKSIL-HHTTN 116 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAM 247 + + A + GLR + + + N +IK K + P+ LL Sbjct: 117 LKHKAALTTIYALGLRVGELVDLRLAAMDKKRNTITIKAAKGKKDRQLPFPESLKPLLRQ 176 Query: 248 -----TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300 P + F K + A F+A KA + K + H +R AT D+ Sbjct: 177 YYKEYKPT--DYLFEGQSKPQYTAASLRSVFRASCKKARIKKKVTLHSLRHAYATHLMDS 234 Query: 301 GATAHELMATYGWKTVDQAETYTKGADR 328 G + G + YT R Sbjct: 235 GTDLRMIQELLGHSDIKTTMIYTHVTTR 262 >gi|332178648|gb|AEE14337.1| Tyrosine recombinase xerC [Thermodesulfobium narugense DSM 14796] Length = 306 Score = 103 bits (256), Expect = 6e-20, Method: Composition-based stats. Identities = 37/249 (14%), Positives = 85/249 (34%), Gaps = 16/249 (6%) Query: 90 NSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVR 149 + R +S+F+ + D + + + + S + SS + L +++ ++ + Sbjct: 33 SYRSDIKSFFNFFKDRINDTVDIEKLLLYYSNYLISNNYKASSLERKLVAIKQFLIFSFQ 92 Query: 150 QEY-VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGL 204 + Y P + PK+ ++ D+ +F S + L F+ L ++G+ Sbjct: 93 EGYYKGKIP--DIVLPKKDKRLPFFLSRSDIFNIFNFISNSKQFTIRDLLIFKMLYFTGM 150 Query: 205 RCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLL--------AMTPIGKETF 255 R S+ + ++ I+ K + + L E Sbjct: 151 RISELLNLKIDNVNFESMDIRVLGKGSKERIIPFHRDILDLFNSYLIFRQESLKPKCENI 210 Query: 256 FINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKT 315 F+N+ + ++ K + H R AT GA+ + G ++ Sbjct: 211 FVNSKGKPLSRQYIWKMCKKVGNFLNLELHPHIFRHSLATHLLSGGASIKTIQEILGHES 270 Query: 316 VDQAETYTK 324 + + YT Sbjct: 271 ISTTQIYTH 279 >gi|292656400|ref|YP_003536297.1| XerC/D-like integrase [Haloferax volcanii DS2] gi|291370519|gb|ADE02746.1| XerC/D-like integrase [Haloferax volcanii DS2] Length = 310 Score = 102 bits (255), Expect = 6e-20, Method: Composition-based stats. Identities = 48/280 (17%), Positives = 99/280 (35%), Gaps = 28/280 (10%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQI-IRKSGDFDYRKITTKHIRSGVESRKHT---P 130 I+E+ K + + ++ + + + HI V Sbjct: 17 INEFIKRKQVTGRSERTLNAYSRILKKFYHEEFPELRPEDTEVFHIEDYVMRLAQRDLSQ 76 Query: 131 SSAIQFLTSMRVLFKWAVRQ---EYVAINPCLSV--ERPKRKTEGIRPWTKEDMQQFKSF 185 ++ ++L S+ F +A+++ E + NP V E PK+ + T E+ +Q Sbjct: 77 NTKRRYLESLSAFFSYAMKRPRFEKITGNPAAVVLEEIPKQVRDRPDCATWENGRQIIHN 136 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMK 243 S+ + + L +G R +++ V L ++ +K G V + +K Sbjct: 137 ISDP-RDKTVATVLAKTGCRLTEALEIQVDDLMLEEGFIRLRKRKGGKQTVVPIDQETIK 195 Query: 244 LLAMTP-----IGKETFFINNDKQKMNATQFSIWFKAKATKAGV----------NKSAHG 288 + G + F++ ++++ T K A +AG+ + H Sbjct: 196 AIQRFQFIRNGRGTDYLFVSIRGERVSKTSVQRAVKKAAEEAGIMEPGEDRFHKKFTPHT 255 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 R T+ + G H L G + + YT+ DR Sbjct: 256 YRTVFTTLMRNQGMPDHILRYIRGDSNDETMDIYTR-VDR 294 >gi|83311040|ref|YP_421304.1| integrase [Magnetospirillum magneticum AMB-1] gi|82945881|dbj|BAE50745.1| Integrase [Magnetospirillum magneticum AMB-1] Length = 370 Score = 102 bits (255), Expect = 6e-20, Method: Composition-based stats. Identities = 63/343 (18%), Positives = 105/343 (30%), Gaps = 38/343 (11%) Query: 15 RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMS---ALTGSTPKREYINSPRKKPTTL 71 R R + GR L + F A + + R TT Sbjct: 18 RCRRDGYYSWVNPTDGREYGLGRDKRAAFAQAVEANLQIMALCDKPRLVDRLNGTTDTTF 77 Query: 72 KWLISEYRKSAHWGSLA-----VNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126 L + YR+ L + +S I + G +ITTK + Sbjct: 78 ADLAALYRQEID-KRLERAKIVKATAMSMRQRLATIETRWGATKVAQITTKDAADMLREY 136 Query: 127 KH--TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 + A + M +F AV + NP + + E R T ED + + Sbjct: 137 EDAGKERMAQSMRSFMLDVFNHAVAIGWRETNPVAVTKAVTVEVERSR-LTLEDFRAIHA 195 Query: 185 FWSEGSQPRLA--FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242 + + PR+A E L +G R D G + + + + K G +++ + Sbjct: 196 YAAANMAPRVARAMELALITGQRRDDLRNMGPKDISDGYLWVVQSKGGARVSIPVGIRLQ 255 Query: 243 ---------KLLAMTPIGKETFFINN-------DKQKMNATQFSIWFKAKATKAGVNKS- 285 + + F +N + A S+ F KAG+ S Sbjct: 256 VVNWSLSEVVANCRDAVLSKHFLHHNAIVGKARPGDPIRAQTISLEFAEARDKAGITGST 315 Query: 286 ------AHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 H +R +A + D A A G K+ + A Y Sbjct: 316 GKTPPTFHEIRSLAARLWTDERGEAFA-KALLGHKSAEMAALY 357 >gi|299538026|ref|ZP_07051312.1| hypothetical protein BFZC1_18510 [Lysinibacillus fusiformis ZC1] gi|298726608|gb|EFI67197.1| hypothetical protein BFZC1_18510 [Lysinibacillus fusiformis ZC1] Length = 293 Score = 102 bits (255), Expect = 6e-20, Method: Composition-based stats. Identities = 39/261 (14%), Positives = 91/261 (34%), Gaps = 11/261 (4%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133 ++ E+ S + +V + ++ Y ++ + + +++ I + S A Sbjct: 19 VVGEFLLSLKLANCSVETVRTYRWYLEKFFENREE-SFLTLSSDTIHQWFQKYDGVKSDA 77 Query: 134 IQFLT--SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS- 190 L + + + V +E + +P + P+ + K ++ + + E + Sbjct: 78 TVKLRLCILSSFYNFCVIEELLEKSPIKTRWLPRLPQPIPQYLGKSELAKTRKQTEESTL 137 Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLLAMTP 249 + R+ EF+L SG R S+ + N + K I V + L+ Sbjct: 138 RNRVLIEFMLTSGCRVSEIVGLNQSDVDLENRTARVIGKGKKIREVHFSEKCAILMERYL 197 Query: 250 IGK----ETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGAT 303 + E F+ + +++ +A ++K H +R AT GA Sbjct: 198 TDEVKKCEALFVTANGKRLGVRGVQYIVHDIGEEAQLDKRLFPHRLRHTFATELLSKGAE 257 Query: 304 AHELMATYGWKTVDQAETYTK 324 + G + + Y + Sbjct: 258 LSFIADELGHTDIRTTQIYAR 278 >gi|319409399|emb|CBI83043.1| integrase/recombinase XerC [Bartonella schoenbuchensis R1] Length = 332 Score = 102 bits (255), Expect = 6e-20, Method: Composition-based stats. Identities = 46/289 (15%), Positives = 86/289 (29%), Gaps = 29/289 (10%) Query: 88 AVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGVESR---KHTPSSAIQFLTSM 140 A + + G D + +R+ + R K + S + + S+ Sbjct: 44 AQAYERDTRQFLIFLCHHLGHEVTCKDLADLRVVDLRAYLAHRRTLKISARSLSRNVASL 103 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT--------KEDMQQFKSFWSEGSQP 192 R F + R+ V + PK +P K + QQ W ++ Sbjct: 104 RSFFNYLSREGIVDTLAAKLIRTPKHPKLLPKPLNVQAALHIIKPENQQEDEPWII-ARN 162 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI--KTQKTGTIITVELP----DGFMKLLA 246 L G+R S++ + + + K G V L + L Sbjct: 163 VAVLALLYGCGMRISEALALTPEQFSDPEITSLSVIGKGGKTRLVPLIKTVYEMVETYLK 222 Query: 247 MTP---IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAG 301 P + + F + + + G+ ++ H +R AT G Sbjct: 223 CCPYPLVSTQPMFRGVRGGPLQPAIIQRLVQNLRARLGLPETTTPHALRHSFATHLLSRG 282 Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLGI--KNSRRISSVVDSDDP 348 + G + + YT L + K R S V++S+ P Sbjct: 283 GDLRTIQELLGHACLSTTQVYTHIDTDRLLEVYQKAHPRASKVIESEKP 331 >gi|284006959|emb|CBA72231.1| phage integrase [Arsenophonus nasoniae] Length = 341 Score = 102 bits (255), Expect = 6e-20, Method: Composition-based stats. Identities = 56/315 (17%), Positives = 103/315 (32%), Gaps = 15/315 (4%) Query: 17 RHGKIIYY-FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75 + G+I +Y F + +RIR + ++AL ++ R T + + Sbjct: 10 KRGEIWWYSFTTPNKQRIRKSAKTTNQQEAKELAALEYNSYWRNE-KLGDVSFHTWQEAV 68 Query: 76 SEYRKSAHWGSLAVNSRISFE-SYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134 + N + + + DQ + K+ D K I+ + + Sbjct: 69 LLWLNEK--PERKENRNMLYGLRWLDQYLGKTKLIDINKYLIDEIKKTKQISGVKNRTVN 126 Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194 L +RV+ K A + P ++ K T IR T+ + ++ E +P Sbjct: 127 AVLQQIRVVLKCAYEHGLLDKIP--PIKLLKEPTRRIRWLTEYEEKRLMVELPEHLKP-- 182 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQKTGTIITVELPDGFMKLLAMTPI 250 F L +GLR S+ + N KT I + L + ++ Sbjct: 183 IVNFALNTGLRMSNITNLKWSQVDINRRQAWIHADESKTNQAIGIPLNQAALTIIREQQG 242 Query: 251 GKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMA 309 + ++ W + +AG+ + H +R AT AG + L Sbjct: 243 HHREYVFTYQGNRIKNAGAKGW-RKAVYRAGLGDFHFHDLRHTWATRHIMAGTPLYVLQE 301 Query: 310 TYGWKTVDQAETYTK 324 GW D Y Sbjct: 302 LGGWSKADTVRKYAH 316 >gi|255692292|ref|ZP_05415967.1| putative integrase/recombinase y4rA [Bacteroides finegoldii DSM 17565] gi|260622025|gb|EEX44896.1| putative integrase/recombinase y4rA [Bacteroides finegoldii DSM 17565] Length = 413 Score = 102 bits (255), Expect = 6e-20, Method: Composition-based stats. Identities = 48/300 (16%), Positives = 98/300 (32%), Gaps = 23/300 (7%) Query: 46 AYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK 105 Y++ T P Y+ RK + ++++Y L+ + +E F +R Sbjct: 86 NYLTDRTIQKPVVRYVI--RKFSGEIGGIMTKYLHLLEEQRLSPKTIDGYEHVFSYFLRH 143 Query: 106 SGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINP--CLSVER 163 + +I+ + + +S + L +MR ++ Q+ + N + R Sbjct: 144 LSLRNVSRISDIGEDDVLTFISSSQNSKQRVLATMRAFCRYLYEQKLINKNIDYVIGRNR 203 Query: 164 PKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQ--HL 217 K + +T E++ Q +S G + GLR SD Sbjct: 204 YIVKEKLPSTYTCEEVLQIESSVNQSTPVGKRDYAMLLLATRLGLRSSDIAGLQFSNLDW 263 Query: 218 QNNIFSIKTQKTGTIITVELPDGFMKLL------AMTPIGKETFFINN-------DKQKM 264 NI + KT I + L + + + F+++ + + Sbjct: 264 DRNIIRLIQYKTKREIELPLLKDVGEAIINYVKYGRPSSSSKQIFLSSLAPYNPVNGAVV 323 Query: 265 NATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 + + I ++ K H +R A+ G + + T G KT Y + Sbjct: 324 SLSVRKIICHSRIDTRDRKKGPHAMRHTLASQLLRNGISLPVISETLGHKTTQTTMGYLR 383 >gi|134287379|ref|YP_001110762.1| putative integrase [Clostridium phage phiC2] gi|93117217|gb|ABE99507.1| putative integrase [Clostridium phage phiC2] Length = 404 Score = 102 bits (255), Expect = 6e-20, Method: Composition-based stats. Identities = 55/366 (15%), Positives = 122/366 (33%), Gaps = 57/366 (15%) Query: 15 RTRHGKIIYYFRKG--HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72 R R K YYF G G+R ++ +T A S + +L Sbjct: 22 RKRGKKWYYYFDAGIVDGKRKKVERVGGNTKKEAEKSLRDAINEYENAGIVFDETNMSLS 81 Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131 ++ + K + N++ S+ + + I + G + I I+ + ++ Sbjct: 82 DYLNFWYKEYVLLNCKYNTQESYRNLIENHIEPRLGKCKLKSINPAIIQEFLNNKSKETY 141 Query: 132 SAIQ--------FLTSMRVLFKWAVRQ-----EYVAINPC------LSVERPKRKTEGIR 172 + L ++ V+ A++ + + NP +V + K +++ + Sbjct: 142 TQNGEEKHYTKGVLKAIYVVLNAALKSAVYPYKLIKENPVQYASIPKNVLKVKNESD-NK 200 Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQ--- 227 T ++ + + + + + ++G+R + ++ NNI ++ Sbjct: 201 TITLDEFNKILEIYPKNTNIYIPLLIGFHTGMRKGEILGLCWDNVDLDNNIIKVRKNLIK 260 Query: 228 -----------KTGTII-TVELPDGFMKLLAMTPIG------------KET----FFINN 259 KT T I +++ D ++L + KET Sbjct: 261 RKVSEFELASPKTKTSIRDIKIGDTLSRILKEEKLNQKKQKIKIGKWYKETEYDWVCRKK 320 Query: 260 DKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319 D +N + K +N + H +R AT+ + GA + G + Sbjct: 321 DGSFVNHNNIDAAIRTINKKLNINFNFHCLRHTHATLLLENGANVKYIQQRLGHSQLSTT 380 Query: 320 -ETYTK 324 +TY+ Sbjct: 381 MDTYSH 386 >gi|312111961|ref|YP_003990277.1| integrase [Geobacillus sp. Y4.1MC1] gi|311217062|gb|ADP75666.1| integrase family protein [Geobacillus sp. Y4.1MC1] Length = 396 Score = 102 bits (255), Expect = 6e-20, Method: Composition-based stats. Identities = 55/375 (14%), Positives = 116/375 (30%), Gaps = 69/375 (18%) Query: 11 VTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIP-----AYMSALTGSTPKREYINSPR 65 + K++TR YYFR G+ + +F P L + + Sbjct: 6 LIKKKTRG----YYFRIDVGKDPITGKRRQQSFGPFKTKTEAKKELIKIRTQVMEGTYFK 61 Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVE 124 + I+E+ ++ + + + + D +I + I T+ I + Sbjct: 62 PSAQDFESFINEWFETVYCQDKSETTIETRRYIIDGHLIPYFKKMPIKDINTRVIDTFFA 121 Query: 125 SRKHTPSSAIQ-------------------FLTSMRVLFKWAVRQEYVAINP---CLSVE 162 + + + + FK AV + +NP + Sbjct: 122 ELRKNGRYPRKKTEHEEKENKDLSESYLHIIFSLLNQAFKKAVVWGLIKVNPMENAQKIS 181 Query: 163 RPKRKTEGIRPWTKEDMQQF-KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--- 218 K++ R WTKE++ F ++ +G F + +G+R + + + Sbjct: 182 VKNNKSKKNRAWTKEEVNIFLEAASKKGLVA--PFLVGVVTGIRRGELLGLKWEDIDFKN 239 Query: 219 -------------NNIFSIKTQ-KTGTI--ITVELPDGFMKLLAMTPI------------ 250 K + KT + + +PD +++L Sbjct: 240 KTITINGTLYRRKGEGLKYKPKTKTDSSDNRVIPIPDAIVEVLRKEKALQDKTREKLGNS 299 Query: 251 --GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHEL 307 + FIN+ + ++ + F+ V + + HG+R +AT+ G + Sbjct: 300 YNSENFVFINDKGKPIDPDYLTRKFRETVKTLNVKQINLHGLRHTAATLLMKLGVHVKIV 359 Query: 308 MATYGWKTVDQAETY 322 G V Y Sbjct: 360 SDILGHSRVQVTLDY 374 >gi|119668679|emb|CAL23817.1| integrase [Staphylococcus aureus] Length = 391 Score = 102 bits (255), Expect = 6e-20, Method: Composition-based stats. Identities = 61/377 (16%), Positives = 126/377 (33%), Gaps = 57/377 (15%) Query: 23 YYFRKGHGRRI---RLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT--TLKWLISE 77 + +R G+ + Y ++ F + +R+ N P+ T K + + Sbjct: 12 WRYRISLGKNTETGKYEYISKTGFKRKSDAKHQAEMIERQLRNGDYIAPSSSTFKQVADD 71 Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA--IQ 135 + K + V+S + + I + + I + V+ S Sbjct: 72 WLKQYA-NDVKVSSVRARKKAIQHAIERFNTKPIQTIKKHDYQRFVDDMSAQYSKNYVDS 130 Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT--------EGIRP-WTKEDMQQFKSFW 186 + S ++FK+A + P ++RPK+K E + K+++ QF Sbjct: 131 IVASTNMIFKYAYDMRLIKAMPSDGIKRPKKKVSVEELEDIEIHKKFLEKDELFQFLEVA 190 Query: 187 SEGSQPRLAFEF---LLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQ-------------- 227 P+ +FE L Y+G+R + + NN SI Sbjct: 191 KYHHSPQNSFEIFTTLAYTGMRAGELLALKWSDIDFENNTISITKTYYNPNNNKKHYQIL 250 Query: 228 --KTGTII-TVELPDGFMKLLAMTP------------IGKETFFINNDKQKMNATQFSIW 272 KT + I + + ++LL + F + + + + S W Sbjct: 251 TPKTESSIGKISVDPHVIQLLKDYKIYVQDTWKNELYVDNNFVFTDLNGYPLVIKKLSTW 310 Query: 273 FKAKATKAGV---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADR 328 +A K + + S H R + +AG E+ K ++ Y K + Sbjct: 311 IQAIMKKTDITNKHISTHSFRHTHCALLIEAGVHIKEIQERLRHKDINTTMNIYAKITNS 370 Query: 329 IRLGIKNSRRISSVVDS 345 + S++ S ++++ Sbjct: 371 YKK--DASQKFSQLMEN 385 >gi|82751630|ref|YP_417371.1| integrase [Staphylococcus aureus RF122] gi|82657161|emb|CAI81601.1| integrase [Staphylococcus aureus RF122] Length = 390 Score = 102 bits (255), Expect = 6e-20, Method: Composition-based stats. Identities = 64/379 (16%), Positives = 130/379 (34%), Gaps = 61/379 (16%) Query: 23 YYFRKGHGRRIR---LPYPHESTF----IPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75 + +R G+ ++ Y S F + + + + +P +T + + Sbjct: 11 WRYRISLGKDVKTGKYKYISNSGFKRKSDAKHHAEMVERQLRTGEYIAP--STSTFQQVA 68 Query: 76 SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA-- 133 E+ S + + V+S + E I + + + I + V S Sbjct: 69 DEWL-SQYANEVKVSSVRAREKAIHHAIERFNNKPIQTINKHEYQRFVNDISAQYSKNYV 127 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT--------EGIRP-WTKEDMQQFKS 184 +TS ++FK+A + + I P ++RPK+KT E + K+++ QF Sbjct: 128 DSIITSTNMIFKYAYDMKLIRIMPSEDIKRPKKKTSVEELEDTEIHKKFLEKDELFQFLE 187 Query: 185 FWSEGSQPRLAFEF---LLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQ------------ 227 P+ +FE L Y+G+R + + NN +I Sbjct: 188 VAKNHHSPQNSFEVFCTLAYTGMRAGELLALKWSDIDFENNTINITKTYYNPNNNKKQFQ 247 Query: 228 ----KTGTII-TVELPDGFMKLLAMTPIG------------KETFFINNDKQKMNATQFS 270 KT + I + + +KLL + F + + + + Sbjct: 248 ILTPKTESSIGKIPVDPHVIKLLKNYKVDVQDTWKNGLYVDNNFVFTDVNGYPLVIKKLQ 307 Query: 271 IWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGA 326 +W KA K + S H R + +AG E+ K ++ Y K Sbjct: 308 LWIKAILKKTDITNKQISTHSFRHTHCALLIEAGVHIKEIQERLRHKDINTTMNIYAKIT 367 Query: 327 DRIRLGIKNSRRISSVVDS 345 + + S++ S ++++ Sbjct: 368 NSYKK--DASQKFSKLMEN 384 >gi|238758491|ref|ZP_04619668.1| Phage integrase [Yersinia aldovae ATCC 35236] gi|238703395|gb|EEP95935.1| Phage integrase [Yersinia aldovae ATCC 35236] Length = 300 Score = 102 bits (255), Expect = 6e-20, Method: Composition-based stats. Identities = 50/277 (18%), Positives = 95/277 (34%), Gaps = 27/277 (9%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129 T+ + Y + LA N+ I ++ GD +TTKHI + + + Sbjct: 16 TVASWLKRYSEILKRRELAENTMKMRVLQIGYINQQFGDRPIETVTTKHIANFINTYVDN 75 Query: 130 PSS--AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 S A+ + + +F+ A+ ++ NP + P K + R + +++ Sbjct: 76 GKSSMAVNLRSVLSDVFREAIADGLISTNPVEATRTPSPKVKRERLDYAAFCKIYEAAGQ 135 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM 247 + + +L+ L +G RC D + + N I KT I + L + Sbjct: 136 QQNWVQLSLALALTTGQRCDDVRQLKRSDVHNGKLWIVQSKTKMQIAISL--SLRLEIMN 193 Query: 248 TPIG----------KETFFI----NNDKQK---MNATQFSIWFKAKATKAGV-----NKS 285 T +G K + I + +K +NA + F + S Sbjct: 194 TTVGEIIEKCLNNSKSEYLISSSSKSSGRKPGALNADSLTKAFVKALKATDLVYDISPPS 253 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 H +R A+ +A G K++ Y Sbjct: 254 FHEIR-SLASRLYEAEYGKEFAQKLLGHKSMKMTNVY 289 >gi|258515632|ref|YP_003191854.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771] gi|257779337|gb|ACV63231.1| integrase family protein [Desulfotomaculum acetoxidans DSM 771] Length = 335 Score = 102 bits (255), Expect = 6e-20, Method: Composition-based stats. Identities = 54/271 (19%), Positives = 89/271 (32%), Gaps = 31/271 (11%) Query: 76 SEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134 + +++ W N + + F+Q I + YR I + +E + P + Sbjct: 51 NRLKRTIQWHQ--ENIQAFKRAMFEQGIELNLNNITYRTIRNNLVLYAIEKWGNQPQTVN 108 Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GS 190 + +++ F + V + Y+A NP VE+ K I K+ +++ + + G Sbjct: 109 MRIRTLKQFFDFLVSEGYLAENPAARVEKLKTANTLIVALNKDQVRRLLAVPDKDTLTGF 168 Query: 191 QPRLAFEFLLY--------SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242 + LL SGLR SD H N + K TV L Sbjct: 169 RDYTIMLLLLDTGLRLSEISGLRISDL------HFTENFIKVM-GKGAKERTVPLQGKLK 221 Query: 243 KLL------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG---VNKSAHGVRKFS 293 K L + FI D + + KAG + S H R Sbjct: 222 KTLREYLQHRGKEPDHDFVFITIDNNPIKNRTIQDRLDIISKKAGVTEIRTSPHTWRHTF 281 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTK 324 A + G A L G + + Y K Sbjct: 282 ARMYILNGGDAFSLKTILGHNSWEMVHRYVK 312 >gi|188590854|ref|YP_001795454.1| site-specific tyrosine recombinase xerc [Cupriavidus taiwanensis LMG 19424] gi|170937748|emb|CAP62732.1| site-specific tyrosine recombinase [Cupriavidus taiwanensis LMG 19424] Length = 349 Score = 102 bits (255), Expect = 6e-20, Method: Composition-based stats. Identities = 52/313 (16%), Positives = 100/313 (31%), Gaps = 50/313 (15%) Query: 52 TGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI----IRKSG 107 + + E L WL R S LA ++ + + + + Sbjct: 4 SSAPADGEAPPPDPLVTRYLDWL----RGS---RKLAEHTLSGYARELRVLQAHAAQHAP 56 Query: 108 DFDYRKITTKHIR---SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEY-VAINPCLSVER 163 + T HIR + + + +S + L++ R + WA R + V++NP V Sbjct: 57 GVALLALQTHHIRNFAARLHAAGLVGTSIGRALSAWRGFYLWAARHGHGVSVNPVDGVRA 116 Query: 164 PKRKTEGIRPWTKEDMQQFKSFWSEGS-----QPRLAFEFLLYSGLRCSDSCRA------ 212 P+ + + E + G+ + + +E SGLR S+ + Sbjct: 117 PRSGHALPKALSVEHAVALVA-HPAGTDAEALRDQAVYELFYSSGLRLSELVQLDLRYAE 175 Query: 213 -------GVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM-------------TPIGK 252 G L ++ T K TV + + L P Sbjct: 176 ADGYRSSGWLDLAGAEVTV-TGKGSRRRTVPVGGRAIAALQAWLAVRDGLLRPGAAPEDA 234 Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMAT 310 F+ ++++ + K +A +AGV H +R AT + + Sbjct: 235 HALFLGPRGRRLSMRTVQLRLKQQALRAGVPADVHPHMLRHSFATHMLQSSGDLRAVQEM 294 Query: 311 YGWKTVDQAETYT 323 G ++ + YT Sbjct: 295 LGHASISTTQVYT 307 >gi|27375981|ref|NP_767510.1| site-specific integrase/recombinase [Bradyrhizobium japonicum USDA 110] gi|27349120|dbj|BAC46135.1| bll0870 [Bradyrhizobium japonicum USDA 110] Length = 329 Score = 102 bits (255), Expect = 6e-20, Method: Composition-based stats. Identities = 54/324 (16%), Positives = 103/324 (31%), Gaps = 24/324 (7%) Query: 15 RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKK-PTTLKW 73 R G+ R+ R T + L + ++ R TTL Sbjct: 5 RKLRGRWQAQVRRRGVP-PRAKSFDTKTAAERWARDLEAEADRSGWVADTRAAEKTTLGE 63 Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT--PS 131 L+S Y S + + + K+T+ + + R T P+ Sbjct: 64 LLSRYANEVTPAKRGAVSEKARINSI--VRCPISHRTLAKLTSSDVAGYRDERLKTVAPA 121 Query: 132 SAIQFLTSMRVLFKWAVRQ--EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 + ++ L ++ + A R+ +V NP V RP R + + Q+ G Sbjct: 122 TVVRELNTISHAIEVATREWGLWVPRNPVKLVRRPPVPRGRTRRLKEGEEQRLLDACDRG 181 Query: 190 SQPRL--AFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELP----DGF 241 P L + +G+R + +H+ + + K G V L Sbjct: 182 RTPLLKPLIILAIETGMRRGELLDLRWEHIDLKRGVAHLPLTKNGDSRDVPLSCRAVQTL 241 Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADA 300 +L + F M + F+ +AG+ + H +R + + + Sbjct: 242 QELRSAGVRHDRVF-------SMTGNSVRLAFEHLRVRAGMSDLHFHDLRHEAISRLFEK 294 Query: 301 GATAHELMATYGWKTVDQAETYTK 324 G E+ A G + + + YT Sbjct: 295 GLNIAEVSAISGHRELKMLQRYTH 318 >gi|254780882|ref|YP_003065295.1| site-specific tyrosine recombinase XerC [Candidatus Liberibacter asiaticus str. psy62] gi|254040559|gb|ACT57355.1| site-specific tyrosine recombinase XerC [Candidatus Liberibacter asiaticus str. psy62] Length = 328 Score = 102 bits (255), Expect = 6e-20, Method: Composition-based stats. Identities = 34/230 (14%), Positives = 76/230 (33%), Gaps = 21/230 (9%) Query: 115 TTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174 + S ++K S + L+ ++ K+ +++ + L++ K+ R Sbjct: 70 EIRAFISKRRTQKIGDRSLKRSLSGIKSFLKYLKKRKITTESNILNMRNLKKSNSLPRAL 129 Query: 175 TKEDMQQFKSFWSEGS---------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK 225 ++ + + L GLR S++ Q++ ++ +++ Sbjct: 130 NEKQALTLVDNVLLHTSHETKWIDARNSAILYLLYGCGLRISEALSLTPQNIMDDQSTLR 189 Query: 226 TQKTGTIITV-ELPDGFMKLL----AMTPIG-----KETFFINNDKQKMNATQFSIWFKA 275 Q G I + L K + + P + F + +N F + + Sbjct: 190 IQGKGDKIRIVPLLPSVRKAILEYYDLCPFDLNLNIQLPLFRGIRGKPLNPGVFQRYIRQ 249 Query: 276 KATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 G+ S AH +R AT G + + G + + YT Sbjct: 250 LRRYLGLPLSTTAHTLRHSFATHLLSNGGDLRSIQSILGHFRLSTTQIYT 299 >gi|160872703|ref|ZP_02062835.1| site-specific recombinase, phage integrase family [Rickettsiella grylli] gi|159121502|gb|EDP46840.1| site-specific recombinase, phage integrase family [Rickettsiella grylli] Length = 336 Score = 102 bits (255), Expect = 6e-20, Method: Composition-based stats. Identities = 36/226 (15%), Positives = 83/226 (36%), Gaps = 13/226 (5%) Query: 120 RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179 ++ +K + ++ + L +R + A ++ +V P + + E R TK++ Sbjct: 109 QAKRSEKKVSNATINRLLEVIRAILNNAFKKGWVEKIPSI---SLFDEIERDRWLTKDEA 165 Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN----NIFSIKTQKTGTIITV 235 ++ AF L +GLR ++ +++ S KT I V Sbjct: 166 ERLLKELPPHLSDMAAFSLL--TGLRKANVTGLKWRNVDLVRRHAFVSASQSKTNKAIPV 223 Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSA 294 L + ++ F + + M + ++ +AG+ + H +R A Sbjct: 224 PLSTEAVAIIRKQVGKHIEFVFTYEGKPM-KQCCTRSWRKALKRAGIEDFRWHDLRHTWA 282 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340 + G + +EL GW + + + Y + + + R++ Sbjct: 283 SWHVQNGTSLYELQRLGGWSSYNTVQRYAHLNSQQL--QEAAERVA 326 >gi|205352422|ref|YP_002226223.1| integrase [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207856607|ref|YP_002243258.1| integrase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|205272203|emb|CAR37061.1| putative integrase [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|206708410|emb|CAR32714.1| putative integrase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|326627474|gb|EGE33817.1| putative integrase [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 359 Score = 102 bits (255), Expect = 6e-20, Method: Composition-based stats. Identities = 50/287 (17%), Positives = 97/287 (33%), Gaps = 34/287 (11%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--- 126 T+ I Y SL+VN+ + + K G+ ++TT+HI +ES Sbjct: 75 TVSAWIDRYEVLLQRRSLSVNTYKIRGNQLATVREKMGEIILAEVTTRHIAKFLESWITE 134 Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 K+T + A++ + + +F+ A+ + ++ NP + P+ K R ++ + + Sbjct: 135 GKNTMAGAMR--SVLSDMFREAIVEGHIVKNPVEATRIPEIKVARERL----QLETYNAT 188 Query: 186 WSEGSQPRLAF----EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241 + F + L +G R D + +N + KTG I + L Sbjct: 189 RAAAEHMPAWFPLAMDLALVTGQRREDIVNMKFSDVFDNRLYVTQIKTGMKIAIPLSLTL 248 Query: 242 MK--------LLAMTPIGKETFFI------NNDKQKMNATQFSIWFKAKATKAGVNKS-- 285 + + + F I N+ ++ + F +GVN S Sbjct: 249 RATGLRLGTVIDRCRLVSRTDFMISAGIRKNSPTGNIHPDGLTKTFVKARKASGVNFSNN 308 Query: 286 ---AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 H +R A G + + + Y D Sbjct: 309 PPTFHEIR-SLAGRLYKNEHGEVFAQKLLGHTSANTTKLYLDERDDK 354 >gi|119477783|ref|ZP_01617906.1| Phage integrase [marine gamma proteobacterium HTCC2143] gi|119448944|gb|EAW30185.1| Phage integrase [marine gamma proteobacterium HTCC2143] Length = 346 Score = 102 bits (255), Expect = 6e-20, Method: Composition-based stats. Identities = 52/334 (15%), Positives = 111/334 (33%), Gaps = 48/334 (14%) Query: 17 RHGKIIYYFRK--GHGRRI----RLPYPHES-TFI-----PAYMSALTGSTPKREYINSP 64 R G ++ GRR+ RL + + F+ AY + G + Sbjct: 10 REGTPYWWVDLVLPDGRRVCQSTRLKCLNAANEFVIDLKADAYKRSREGIVHDK------ 63 Query: 65 RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK---SGDFDYRKITTKHIRS 121 T + + Y ++ S ++ D + + GD R+++ + Sbjct: 64 -----TWRQAVVRYLAEN-------ATKKSLQADRDNLKKLDAFVGDLLLRQVSMDSLWP 111 Query: 122 GVESRKH---TPSSAIQFLTSMRVLFKWAVRQE-YVAINPCLSVERPKRKTEGIRPWTKE 177 + R+ T ++ + L +R +F A + ++ P + K IR + Sbjct: 112 FIHQRRDDGVTDATINRALEVVRRIFHLARDEWCWLERFP--KIRMLKEPKRRIRFLRRP 169 Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQKTGTII 233 ++ + + R +F + +G R + + + + T K G Sbjct: 170 EVNRLLEELPD--HMRPVVQFAVATGCRMGEILKLEWNRVDFDRRVAWLDHGTTKNGDGR 227 Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKF 292 + L + + L + + + + +K +A + N H +R Sbjct: 228 GIPLNNDAVLALRSLHGQHQRWCFTFRGKPI--KAIGSCWKRALERAQIENFRFHDLRHT 285 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGA 326 A+ +G + ELM GWK+ + Y A Sbjct: 286 WASWHVMSGTSLQELMELGGWKSYEMVLRYAHLA 319 >gi|313764266|gb|EFS35630.1| site-specific recombinase, phage integrase family [Propionibacterium acnes HL013PA1] gi|313816357|gb|EFS54071.1| site-specific recombinase, phage integrase family [Propionibacterium acnes HL059PA1] gi|314915743|gb|EFS79574.1| site-specific recombinase, phage integrase family [Propionibacterium acnes HL005PA4] gi|314917889|gb|EFS81720.1| site-specific recombinase, phage integrase family [Propionibacterium acnes HL050PA1] gi|314920271|gb|EFS84102.1| site-specific recombinase, phage integrase family [Propionibacterium acnes HL050PA3] gi|314957876|gb|EFT01979.1| site-specific recombinase, phage integrase family [Propionibacterium acnes HL002PA1] gi|315098723|gb|EFT70699.1| site-specific recombinase, phage integrase family [Propionibacterium acnes HL059PA2] gi|315101508|gb|EFT73484.1| site-specific recombinase, phage integrase family [Propionibacterium acnes HL046PA1] gi|327450593|gb|EGE97247.1| site-specific recombinase, phage integrase family [Propionibacterium acnes HL087PA3] gi|327454068|gb|EGF00723.1| site-specific recombinase, phage integrase family [Propionibacterium acnes HL083PA2] gi|328753150|gb|EGF66766.1| site-specific recombinase, phage integrase family [Propionibacterium acnes HL025PA2] gi|328754011|gb|EGF67627.1| site-specific recombinase, phage integrase family [Propionibacterium acnes HL087PA1] Length = 420 Score = 102 bits (255), Expect = 7e-20, Method: Composition-based stats. Identities = 58/373 (15%), Positives = 116/373 (31%), Gaps = 51/373 (13%) Query: 23 YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSA 82 +Y + G +R+R + L PR TL ++ + + Sbjct: 27 FYDKNGTKQRVRGRGATRAEATKRLNKNLRQRIDGTRTATGPRGGL-TLNQWVNIWLATK 85 Query: 83 HWGS-LAVNSRISFE-SYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA-IQFLTS 139 + + + Y I K G +++T + I+ + + + + + Sbjct: 86 QASEQMKPQTAQQHKIRYKQWIAPKLGSRPVKRLTAEEIQEVIAAGAQQGHAIPVNIFKT 145 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEG-------IRPWTK--EDMQQFKSFWSEGS 190 M AV+ V +NP + P++++ I W++ + M ++ + Sbjct: 146 MNAALNSAVKAGEVDLNPMKQLTPPRQRSAAGEKDTAHIEYWSRIMDKMCKWLAQPECEL 205 Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQ---------------KTGTII 233 R + GLR ++ N +IK Q KTG Sbjct: 206 HDRYTLTIAMLLGLRRAELLGLTWDCFDECMNKLTIKQQLMRQNDGSYIIQNSTKTGKNR 265 Query: 234 TVELPDGFMK---------LLAMTPIGKETFFINNDKQKMNATQFSIWFKA----KATKA 280 T+ LP+ + + L A P F+ + + ++ ++ K Sbjct: 266 TLMLPERWKEAFLLQRQKSLTAAAPEWNNLVFLTPAGGPITYSMYNKLWRNTIVTYMAKE 325 Query: 281 GVNK-------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT-KGADRIRLG 332 G H RK A+ A G M+ G + YT AD+ R Sbjct: 326 GQEWKEEQHYWRPHTCRKMCASWLAWGGVDIQTAMSILGHSSEAMTLYYTIINADQQRKA 385 Query: 333 IKNSRRISSVVDS 345 ++ + + Sbjct: 386 LEGLSNVYEHHNV 398 >gi|76799205|ref|ZP_00781383.1| integrase [Streptococcus agalactiae 18RS21] gi|76585441|gb|EAO62021.1| integrase [Streptococcus agalactiae 18RS21] Length = 382 Score = 102 bits (255), Expect = 7e-20, Method: Composition-based stats. Identities = 60/343 (17%), Positives = 107/343 (31%), Gaps = 35/343 (10%) Query: 11 VTKERTRHGKIIY----YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66 + + ++G Y Y G+R + S F SA + + P+ Sbjct: 23 IESYKKKNGTTAYKFLLYAGYVDGKRKYIRR---SGFSTR-QSARAALINLQAELEKPKS 78 Query: 67 KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126 T L ++ K + + I+ K I +++ E Sbjct: 79 S-MTFGMLTKQWLKEYEKTVQGSTYLKTERNINKHILPKLDKVTIGDINPLLVQNLTEEW 137 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE---GIRPWTKEDMQQFK 183 + L +R + AVR Y++ NP L + PK K E G +T ++QF Sbjct: 138 CSQLKYGGKILGLVRNILNLAVRYGYISNNPALPITAPKIKRERKTGNNFYTLNQLKQFL 197 Query: 184 SFWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI----KTQKTGTIITV-- 235 + F L ++G+R + L N SI +TG I V Sbjct: 198 ELVEKTDNIEKIALFRLLAFTGIRKGELLALTWDDLNRNTLSINKAVTRTQTGLEIDVTK 257 Query: 236 ------------ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283 E + +L P F + M + W + Sbjct: 258 TKSSDRLISLDDETLEILQQLHETFPSSTFMF-QSESGGIMTPSLPRKWLLQIIKGTDLP 316 Query: 284 K-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTK 324 + + HG R A++ ++G + ++ G + YT Sbjct: 317 QITVHGFRHTHASLLFESGLSLKQVQHRLGHGDLQTTMNVYTH 359 >gi|288801073|ref|ZP_06406529.1| integrase/recombinase XerC [Prevotella sp. oral taxon 299 str. F0039] gi|288332007|gb|EFC70489.1| integrase/recombinase XerC [Prevotella sp. oral taxon 299 str. F0039] Length = 297 Score = 102 bits (255), Expect = 7e-20, Method: Composition-based stats. Identities = 43/275 (15%), Positives = 98/275 (35%), Gaps = 24/275 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFD----YRKITTKHIRSGVESR-- 126 +I E+ + ++ + S+ + D + IT +RS +ES Sbjct: 2 IIDEFLNYLKYEKRRSLLTVESYSEDLKAFQSYFTNLDSLLSWETITANDVRSWIESMMD 61 Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 +T ++ + L+++R +++A + +P +V PK++ + + +M++ Sbjct: 62 KGNTATTINRRLSALRSFYRFARLRLAYEKDPAKNVIGPKKQKLLPQFLKEVEMERLLDD 121 Query: 186 WSEGS-----QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPD 239 +G + R+ +G+R S+ + T K V + Sbjct: 122 VLQGDDFESVRDRIIILLFYETGVRLSELTALNCCDIDLMQRQIKVTGKRNKQRIVPFGE 181 Query: 240 GFMKLLAMTP--------IGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGV 289 L I + F++N +M +T + ++ +S H + Sbjct: 182 KLSLELRAYILIRGERENIVDDALFVSNKGSRMPSTTIRRRVEHYLSQVSTLKKRSPHVL 241 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 R AT+ + A + G +++ E YT Sbjct: 242 RHTFATVMLNNDADIESVRHLLGHESLKATEVYTH 276 >gi|148258743|ref|YP_001243328.1| tyrosine recombinase XerD subunit [Bradyrhizobium sp. BTAi1] gi|146410916|gb|ABQ39422.1| tyrosine recombinase XerD subunit [Bradyrhizobium sp. BTAi1] Length = 308 Score = 102 bits (255), Expect = 7e-20, Method: Composition-based stats. Identities = 45/278 (16%), Positives = 90/278 (32%), Gaps = 38/278 (13%) Query: 90 NSRISFESYFDQIIRKSGDFDYRKITT-----KHIRSGVESRKHTPSSAIQFLTSMRVLF 144 N+ ++ + T + + +++R SS + L++MR LF Sbjct: 17 NTLDAYRRDLSDLSEFLAGKANSFTTADTQALRDYLADLDTRGFKSSSVARRLSAMRHLF 76 Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ-------PRLA-- 195 ++ + + + +P + PKR + + D+ + + E ++ RL Sbjct: 77 RFLLSEHIRSDDPAAILSGPKRGRPLPKVLSIGDVDRMLTRAKELTETADASPAQRLRAL 136 Query: 196 -----FEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELP--------DGF 241 E L +GLR S+ + + + K V L D Sbjct: 137 RLYCLLEVLYATGLRVSELVALPRTAARHDARMIVVRGKGNKERLVPLNQASRQAMADYL 196 Query: 242 MKLLAMTPIGKET-----FFINNDK--QKMNATQFSIWFKAKATKAGVNK---SAHGVRK 291 L A+ P K + + + + F+ K A +G+ S H +R Sbjct: 197 AALDALKPEKKASATFGKWLFPSFGESGHLTRQHFARDLKELAVASGLPARLVSPHVLRH 256 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 A+ GA + G + + YT + Sbjct: 257 AFASHLLHNGADLRIVQTLLGHTDISTTQIYTHVVEER 294 >gi|253687244|ref|YP_003016434.1| integrase family protein [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251753822|gb|ACT11898.1| integrase family protein [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 374 Score = 102 bits (255), Expect = 7e-20, Method: Composition-based stats. Identities = 42/242 (17%), Positives = 90/242 (37%), Gaps = 18/242 (7%) Query: 95 FESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQF---LTSMRVLFKWA-VRQ 150 ++ + + D + + S +R P SA L + L+ A V Sbjct: 40 RSRLANRNMDEISSIDIAEYRDNRL-SEFNARTQKPISANTVRLELALLSALYNLAKVEW 98 Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA-FEFLLYSGLRCSDS 209 +INP +V +P + R T ++ +Q ++ + + LA F+ L +G+R + Sbjct: 99 GTCSINPVENVRKPTVSSGRTRRLTTQEERQLTRYFKDKNPELLAIFQIALETGMRQGEI 158 Query: 210 CRAGVQ--HLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT---PIGKETFFINNDKQKM 264 + L+ + + K GT V L ++L P + + + Sbjct: 159 LSLRWEYTDLRLGVAHLPLTKNGTSRDVPLSSKARQILYGLGERPHHENGYIFS-----Y 213 Query: 265 NATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETY 322 ++ F ++ + + H +R + + + G E+ A G K+++ + Y Sbjct: 214 TSSGFKSAWRVALKALAIDDLHFHDLRHEAISRFFELGTLNVMEVAAISGHKSMNMLKRY 273 Query: 323 TK 324 T Sbjct: 274 TH 275 >gi|251780787|ref|ZP_04823707.1| phage integrase family protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243085102|gb|EES50992.1| phage integrase family protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 384 Score = 102 bits (255), Expect = 7e-20, Method: Composition-based stats. Identities = 57/364 (15%), Positives = 118/364 (32%), Gaps = 62/364 (17%) Query: 17 RHGKIIY--YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74 + G Y Y+ +G + +L T+ A + S +LK Sbjct: 7 KKGNNYYIRYYETINGVKKQLERKGGYTYAEAEKKLNEIIYKQNNGYVSSN---MSLKKY 63 Query: 75 ISEYRKSAHWGSLAVNSRISFESYFD----QIIRKSGDFDYRKITTKHIRSGVESRKHTP 130 ++ + + + + + +E Y D II G+ + HI + ++T Sbjct: 64 LNMWLEEYIKTNYSQRT---YEIYLDTVEKHIIPIIGNIKLSDLKVVHIEKYLNHLRNTK 120 Query: 131 S----SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + +A ++ A++ + + NPC VE PK+ T E+ ++ Sbjct: 121 TINGTTANLHFRNLNTALNRAIKLQLLTNNPCTYVEPPKKNKFKGNYLTVEEFKKIYDSM 180 Query: 187 SEGSQPRLAFEFLLY----SGLRCSDSCRAGVQ---HLQNNIFSIKTQ--KTGTIITV-- 235 + ++F+ LL +G R + C L NN + + +T + + Sbjct: 181 IVNNYLNMSFKTLLNLAVETGCRRGEMCGLEWDKDIDLHNNTITFRRALIRTNSSGWIMG 240 Query: 236 -----------ELPDGFMKLLAMTPIGKE---------------------TFFINNDKQK 263 + D K L + I + + Sbjct: 241 KLKTQSSYRCLPISDFLSKQLKELKKEQMKNKLLFGEEYCKNIFNGIEYNLVCIQRNGKY 300 Query: 264 MNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE- 320 M T + +A + +NK H +R SAT+ ++G + G +++ Sbjct: 301 MCPTDITDRLRALLKRNEINKKIRWHDLRHTSATLLLESGVDMKTVQERLGHASMNTTSN 360 Query: 321 TYTK 324 Y+ Sbjct: 361 IYSH 364 >gi|86608861|ref|YP_477623.1| phage integrase family site specific recombinase [Synechococcus sp. JA-2-3B'a(2-13)] gi|86557403|gb|ABD02360.1| site-specific recombinase, phage integrase family [Synechococcus sp. JA-2-3B'a(2-13)] Length = 330 Score = 102 bits (255), Expect = 7e-20, Method: Composition-based stats. Identities = 51/323 (15%), Positives = 106/323 (32%), Gaps = 37/323 (11%) Query: 51 LTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD 110 +G + + P +L L +++ + LA SR ++ +Q + Sbjct: 5 RSGWAQETHPQSQPTGPVPSLSHLAAQFLQERQ-RDLAPASRRTYRIALEQFAKTCP-VP 62 Query: 111 YRKITTKHIRSGVESRK---------------HTPSSAIQFLTSMRVLFKWAVRQEYVAI 155 ++ H++S + S K +P++ +++ F+WA ++ Y+ Sbjct: 63 LPQVQPAHVQSFLNSLKGRPFRNRSGQRIHPPASPATYNLKRLALQQFFEWASQRGYLQD 122 Query: 156 N-PCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFE-FLLYSGLRCSDSCRAG 213 P ++ + R + +Q+ S A +L GLR + Sbjct: 123 PLPTQAIRPARLPARLPRDLDRLLLQRVLQRAQNHSLRYAALIRLMLECGLRAQELLDLT 182 Query: 214 VQHL----QNNIFSIKTQKTGTIITVELPDGFMKLLA---------MTPIG----KETFF 256 VQ + ++ ++ K V + D +LL P ++ Sbjct: 183 VQDFQISPEGSLLEVRCGKGSKPRAVAVGDPLSELLQQYLSRERGPCAPTDPLFVSQSRC 242 Query: 257 INNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTV 316 + + + +++ H R AT+ D G + G T Sbjct: 243 LAYRGRPLTYDGLRHIVLKLTEPEPGHQTPHQFRHSFATLLLDRGVAPEHIQHLLGHTTA 302 Query: 317 DQAETYTKGADRIRLGIKNSRRI 339 YT+ A+ +R I SR I Sbjct: 303 AMTMRYTQRAN-LRAAIARSREI 324 >gi|330955110|gb|EGH55370.1| site-specific recombinase, phage integrase family protein [Pseudomonas syringae Cit 7] Length = 312 Score = 102 bits (255), Expect = 7e-20, Method: Composition-based stats. Identities = 53/311 (17%), Positives = 114/311 (36%), Gaps = 29/311 (9%) Query: 60 YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119 YI + TL + Y + ++ + + Q+I G + ++ + I Sbjct: 6 YIQRGGSERMTLAMALKRYLAEIS-PTKKPTTQRAEATKAQQLISHLGKYSMAALSAEII 64 Query: 120 RSGVESR------KHTPSSAIQF---LTSMRVLFKWAVRQEY---VAINPCLSVERPKRK 167 + ++R + P+S L + L+ A+ QE+ ++ NP L++ +P Sbjct: 65 ANYRDTRLASITSRGKPTSNNTVRLELAFLSHLYTGAL-QEWGLGLSFNPVLNIRKPSHG 123 Query: 168 TEGIRPWTKEDMQQFKSFWSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQNN--IFS 223 R + E+ ++ + + S P L L +G+R S+ + + Sbjct: 124 EGRDRRLSAEEERRLLAAVNAHSNPMLGWIVRIALETGMRSSEITSLRRHQVDLKKRVVR 183 Query: 224 IKTQKTGTIITVELPD------GFMKLLAMTPIGKETFFINNDKQ--KMNATQFSIWFKA 275 + K + TV L + PI + F + K +A F+ + Sbjct: 184 LSDTKNDSARTVPLTRLATDTFQLAMSNPIRPIDCDLVFFGEPGKEGKRSAYAFTKTWGK 243 Query: 276 KATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIK 334 TK G+ + H +R + + + G + E+ A G K++ + YT R + Sbjct: 244 LRTKLGMPDLRFHDLRHEAVSRLVEGGLSDQEVSAISGHKSMQMLKRYTHL--RAEDLVS 301 Query: 335 NSRRISSVVDS 345 ++ + + Sbjct: 302 RLDKLEARAPN 312 >gi|217961405|ref|YP_002339973.1| prophage LambdaBa02, site-specific recombinase, phage integrase family [Bacillus cereus AH187] gi|229140651|ref|ZP_04269202.1| Prophage LambdaBa02, site-specific recombinase, phage integrase [Bacillus cereus BDRD-ST26] gi|217065831|gb|ACJ80081.1| prophage LambdaBa02, site-specific recombinase, phage integrase family [Bacillus cereus AH187] gi|228642824|gb|EEK99104.1| Prophage LambdaBa02, site-specific recombinase, phage integrase [Bacillus cereus BDRD-ST26] Length = 376 Score = 102 bits (255), Expect = 7e-20, Method: Composition-based stats. Identities = 46/304 (15%), Positives = 103/304 (33%), Gaps = 30/304 (9%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHT 129 L+ + + S ++ ++ +++ + D I + + + Sbjct: 63 FSQLVEIWMQEKE-TSCRPSTLYQYKRILRSRVMPEFADKRLSDIKPLTVHNFHQKLLKE 121 Query: 130 PSSAIQFLTS---MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + + ++ + V E + NP +RPK K + WT + +F + Sbjct: 122 GLTTKYISSVDVMLKQILDKGVELEMINSNPAKKAKRPKVKKKAQASWTIDQAMKFMEYA 181 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT------------ 234 +AF L++G+R + + + +I Q+T T++ Sbjct: 182 KIKGSYYIAFVLALHTGMRIGEVLALQWDDINFDNKAIHVQRTLTLVDGKYELGETKTEA 241 Query: 235 ----VELPDGFMKLLAMTPIGK-----ETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284 + + + M+ L K + +K+ ++ KA V Sbjct: 242 SNRVIPMTEELMEELLDYQNHKKENSFDLLICTRNKKIVHPYTIRYQMKALCEAIDVPYI 301 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSVV 343 H +R+ TI D+GA A + G V YT + + I+ + ++ +V+ Sbjct: 302 RFHDIRRTFTTILIDSGANAKVVAKLLGHTNVSTTLNIYTDTYEERQ--IEATEKLGNVL 359 Query: 344 DSDD 347 S Sbjct: 360 KSGR 363 >gi|315445045|ref|YP_004077924.1| tyrosine recombinase XerC subunit [Mycobacterium sp. Spyr1] gi|315263348|gb|ADU00090.1| tyrosine recombinase XerC subunit [Mycobacterium sp. Spyr1] Length = 300 Score = 102 bits (255), Expect = 7e-20, Method: Composition-based stats. Identities = 43/268 (16%), Positives = 92/268 (34%), Gaps = 28/268 (10%) Query: 85 GSLAVNSRISF----ESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT---PSSAIQFL 137 + ++R ++ S F + +S +T +RS + + S+ + Sbjct: 16 RGRSEHTRRAYLGDLRSLFAFLDERSPGTGLGGLTLPMLRSWLAAHAAADTARSTLARRT 75 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS------- 190 +S++ WAVR+ + +P ++ PK + ++ + G+ Sbjct: 76 SSVKTFTAWAVRRGLIGDDPASRLQVPKARRTLPSVLRQDQARDALEAAESGAQQGDPLA 135 Query: 191 -QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLL--- 245 + RL E L +G+R S+ C V + + ++ K TV + L Sbjct: 136 VRDRLVVEMLYATGIRVSELCGLDVDDVDTSRRLLRVLGKGNKQRTVPYGEPAHAALTAW 195 Query: 246 -------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG--VNKSAHGVRKFSATI 296 T + ++++ Q + G + HG+R +AT Sbjct: 196 LHEGRPALATADSGPALLLGARGKRLDPRQARTVVHQTVSAVGGAPDIGPHGLRHSAATH 255 Query: 297 SADAGATAHELMATYGWKTVDQAETYTK 324 + GA + G ++ + YT Sbjct: 256 LLEGGADLRVVQELLGHSSLATTQLYTH 283 >gi|145224715|ref|YP_001135393.1| site-specific tyrosine recombinase XerC [Mycobacterium gilvum PYR-GCK] gi|189030078|sp|A4TEB1|XERC_MYCGI RecName: Full=Tyrosine recombinase xerC gi|145217201|gb|ABP46605.1| tyrosine recombinase XerC subunit [Mycobacterium gilvum PYR-GCK] Length = 300 Score = 102 bits (255), Expect = 7e-20, Method: Composition-based stats. Identities = 43/268 (16%), Positives = 92/268 (34%), Gaps = 28/268 (10%) Query: 85 GSLAVNSRISF----ESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT---PSSAIQFL 137 + ++R ++ S F + +S +T +RS + + S+ + Sbjct: 16 RGRSEHTRRAYLGDLRSLFAFLDERSPGTGLGGLTLPMLRSWLAAHAAAGTARSTLARRT 75 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS------- 190 +S++ WAVR+ + +P ++ PK + ++ + G+ Sbjct: 76 SSVKTFTAWAVRRGLIGDDPASRLQVPKARRTLPSVLRQDQARDALEAAESGAQQGDPLA 135 Query: 191 -QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLL--- 245 + RL E L +G+R S+ C V + + ++ K TV + L Sbjct: 136 VRDRLVVEMLYATGIRVSELCGLDVDDVDTSRRLLRVLGKGNKQRTVPYGEPAHAALTAW 195 Query: 246 -------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG--VNKSAHGVRKFSATI 296 T + ++++ Q + G + HG+R +AT Sbjct: 196 LHEGRPALATADSGPALLLGARGKRLDPRQARTVVHQTVSAVGGAPDIGPHGLRHSAATH 255 Query: 297 SADAGATAHELMATYGWKTVDQAETYTK 324 + GA + G ++ + YT Sbjct: 256 LLEGGADLRVVQELLGHSSLATTQLYTH 283 >gi|218249160|ref|YP_002374530.1| integrase domain protein SAM domain protein [Cyanothece sp. PCC 8801] gi|218169736|gb|ACK68470.1| integrase domain protein SAM domain protein [Cyanothece sp. PCC 8801] Length = 314 Score = 102 bits (255), Expect = 7e-20, Method: Composition-based stats. Identities = 54/297 (18%), Positives = 100/297 (33%), Gaps = 28/297 (9%) Query: 51 LTGSTPKREYINSPRKKPTTLKWL-ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF 109 ++GS K+ + PT L+ + + E+ + +L+ NS+ ++ + + Sbjct: 1 MSGSPAKKAPRHQSLTSPTDLQNVRVEEFLAT---KALSPNSQKAYRRELLTFLAIV-NK 56 Query: 110 DYRKITTKHIRSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167 + +I ++HI K PSS + L+++ F W + + Y NP L++ + K Sbjct: 57 PFARIQSRHIVQYKVQLTEKLAPSSVNRALSALSSFFDW-LEEAYGNPNPTLTIRQNKLP 115 Query: 168 TEGIRPWTKEDMQQFKSFW---SEGSQPR-LAFEFLLYSGLRCSDSCRAGVQHLQNNIFS 223 R + +++ ++ R A L GLR + + Sbjct: 116 LPPARDLSDAELEALFEALENRPNLTKVRDKAVFAALRHGLRAGEVASLNLGDYDGIRLH 175 Query: 224 IKTQKTGTIITVEL----PDGFMKLLAMTPIGKETFFIN-----------NDKQKMNATQ 268 I+ K + V L D L E+F N + Sbjct: 176 IRVAKDDSSGHVPLDAPGRDAINTYLQQRRETGESFNPTSPLFLSHSPVPNTPPRFGYQG 235 Query: 269 FSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 + K AGV N + H +R AT G K+ + Y K Sbjct: 236 IYYFIKELGEMAGVANLTPHRLRHTFATQLLLTGMEPLHARTLTRHKSEVSFKRYAK 292 >gi|110802062|ref|YP_699092.1| tyrosine recombinase XerD [Clostridium perfringens SM101] gi|110682563|gb|ABG85933.1| tyrosine recombinase XerD [Clostridium perfringens SM101] Length = 290 Score = 102 bits (255), Expect = 7e-20, Method: Composition-based stats. Identities = 38/269 (14%), Positives = 96/269 (35%), Gaps = 18/269 (6%) Query: 72 KWLISEYRKSAHWGSLAVNSRISF----ESYFDQIIRKSGDFDYRKITTKHIRSGVESRK 127 K L+S+Y N+ ++ Y D + K ++ Sbjct: 2 KDLVSKYEVYLESIGKRKNTVSAYITDVSMYLDFVYEKGLKVSEDSYPLISYVQHLKESH 61 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS--- 184 +PSS + + S+R + + V +E++ P L++++ + + + T E++ + + Sbjct: 62 KSPSSIQRTIISLRNFYNFLVAEEFLKKVPNLTMKKERIEKKKPLVLTVEEINKIMNSTN 121 Query: 185 -FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFM 242 +G + + E + +G++ S+ ++ + + + + + G + + Sbjct: 122 VLTEKGIRDKALLELMYATGMKVSELISLRIEDINLDSSFVNCRDSRGYERLIPIGKEAK 181 Query: 243 KLLAMTPI-------GKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFS 293 + + + G + F+N + + K A A + K + R Sbjct: 182 ESIKRYIVVREDNSKGSDKLFLNMSGEPITRQGVWRIVKEYAVIANIGKDINLNTFRHSF 241 Query: 294 ATISADAGATAHELMATYGWKTVDQAETY 322 A GA A + G + + + Y Sbjct: 242 AVHLLQNGANAKVVQELLGNQVMTYIDMY 270 >gi|51245456|ref|YP_065340.1| integrase/recombinase [Desulfotalea psychrophila LSv54] gi|50876493|emb|CAG36333.1| related to integrase/recombinase [Desulfotalea psychrophila LSv54] Length = 357 Score = 102 bits (255), Expect = 7e-20, Method: Composition-based stats. Identities = 51/345 (14%), Positives = 111/345 (32%), Gaps = 31/345 (8%) Query: 13 KERTRHGKIIY--YFRKGHGRRIRLPYPH---ESTFIPAYMSALTGSTPKREYINSPRKK 67 K+R I++ + R R +P + Y + L + + Sbjct: 5 KKRENKSGIVWEAHIRIKGHTPRRKSFPTKCRAQAWAVEYEALLRAKDAGDPRL----AE 60 Query: 68 PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG-DFDYRKITTK---HIRSGV 123 +L+ + +Y + + ++ + R G D I + Sbjct: 61 QISLQEALDKYAEDSTAAGKKESTLDLESRATRHLTRLLGADRSLADIRPALVAQYQLTR 120 Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVR-QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 + ++ S+ L + ++ A + NP + R R T + + Sbjct: 121 QKEGYSNSAIRTELAILSKMYNNARKIWGLNIKNPVNDITRVPPDKGNTRFLTTAEAKIV 180 Query: 183 KSFWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELP 238 P+ L+++G+R S+ R + + S++ K+G +V L Sbjct: 181 LDESKNIRNPKFYPFVLLLMHTGMRSSEVARLRPEDINFETLSLRIHETKSGIPRSVPLT 240 Query: 239 DGFMKLLAM-TPIGKETFFINNDK-----------QKMNATQFSIWFKAKATKAGVNK-S 285 ++L +P +F+ + + ++ S+ K +A+ + Sbjct: 241 TKAAEVLQTVSPEATGYYFLKENHLNQKDIRLAPAKAFSSCWRSLRKKMEASGHKIPHFR 300 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 H +R +A+ AG E+ G T+ YT D R Sbjct: 301 PHDLRHTAASHLLMAGVDIREVADILGHSTLAMTMRYTHLLDSRR 345 >gi|119357861|ref|YP_912505.1| phage integrase family protein [Chlorobium phaeobacteroides DSM 266] gi|119355210|gb|ABL66081.1| phage integrase family protein [Chlorobium phaeobacteroides DSM 266] Length = 419 Score = 102 bits (255), Expect = 7e-20, Method: Composition-based stats. Identities = 47/294 (15%), Positives = 100/294 (34%), Gaps = 30/294 (10%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIR-KSGDFDYRKITTKHIRSG----VESR 126 I YR+ A N + + + R G + + + + + Sbjct: 70 DDFIEFYRRYAE----KDNYPK-YANVLPILRRFSLGVIHFASLNSAWLERFKFYLLSLE 124 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + ++A +LTS++ + + A R+ Y+ + V K+ E ++ Sbjct: 125 SISQNTAGGYLTSVKTVLRQAFREGYLIEDISAKVPGIKKTDIQRHFLPVEQVEALHKAK 184 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVELPDGFM 242 S + AF F +SGLR SD + + + +KT + L + Sbjct: 185 SNNEMIKQAFLFACFSGLRLSDVQALYWEQISQINGAPYIQFRQRKTCQYENLPLSEQAA 244 Query: 243 KLLAM--------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKF 292 +L P G + FI + + + + +AG+ H R Sbjct: 245 TILQEVRALHAEYAPSGSDKVFIL-----PSRERIAQVLEVWGIRAGLPFKLHFHVSRHT 299 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL-GIKNSRRISSVVDS 345 AT++ AG + + G + + + Y + D +L ++ + + + Sbjct: 300 FATMNLTAGCDLYTVSKLLGHREIKTTQIYGRIVDSKKLDAVQALPVLQGAIGN 353 >gi|167771429|ref|ZP_02443482.1| hypothetical protein ANACOL_02795 [Anaerotruncus colihominis DSM 17241] gi|167666069|gb|EDS10199.1| hypothetical protein ANACOL_02795 [Anaerotruncus colihominis DSM 17241] Length = 395 Score = 102 bits (255), Expect = 7e-20, Method: Composition-based stats. Identities = 56/361 (15%), Positives = 110/361 (30%), Gaps = 71/361 (19%) Query: 19 GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW-LISE 77 +Y+RK F Y ++G + K E + + L Sbjct: 12 DGERWYYRKREL----------VGFTVKYGK-VSGFSSKEEACAARDASDAAFQAQLTQL 60 Query: 78 YRKSAH----------------WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK-HIR 120 Y K + +++ ++ ++ I + D + ++ I Sbjct: 61 YGKHPEDVLFVDFMIFWVYQVYFPTVSYATQSIYDYVVHSYILQISDSAMKLLSVSTKII 120 Query: 121 SGVESRKHTPS--SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 + + R S +A + + +F A+ Q +A NP + +R +R I+ +K++ Sbjct: 121 NDMLVRASKRSNTAAEKVREVLNSVFNGAIAQGLLAENPVENSKRYRRDIPDIKLLSKDE 180 Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-------------------- 218 + F + L L+ GLR + + Sbjct: 181 LHLFLNTAKNYEICFLEILLALFGGLRRGEIAGLHISDFDFERETVFIQRQLVWEYDWVD 240 Query: 219 ----NNIFSIKTQKTGTIITV-ELPDGFMKLLAMTP--------------IGKETFFINN 259 N + +K KT + I + LP +L N Sbjct: 241 GKRSNGHWVVKPPKTESGIRILTLPSVIFSVLRRRIQRIEEDKRKYGNRYRDSGYISCNE 300 Query: 260 DKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318 + + K + G++ SAH +R AT + G + H L A G K+ + Sbjct: 301 MGYPREYSFLTAKMKKICLQLGLSVISAHDLRHMFATFLVEKGESIHYLSALMGHKSEET 360 Query: 319 A 319 Sbjct: 361 T 361 >gi|163746956|ref|ZP_02154313.1| Phage integrase [Oceanibulbus indolifex HEL-45] gi|161380070|gb|EDQ04482.1| Phage integrase [Oceanibulbus indolifex HEL-45] Length = 549 Score = 102 bits (255), Expect = 7e-20, Method: Composition-based stats. Identities = 48/308 (15%), Positives = 104/308 (33%), Gaps = 30/308 (9%) Query: 39 HESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESY 98 + Y I+ P TL + Y + + ++ + Sbjct: 226 TDPDERDEYDLI---KLKLERRISELTPDPHTLTAVSEAYFT---FNGIRPFTQAKYRRD 279 Query: 99 FDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI--QFLTSMRVLFKWAVRQEYVAIN 156 ++ GD + +TT H++ + T +A T ++ LFK+A ++E + +N Sbjct: 280 IGRLAALVGDIPVKGVTTAHLKQLRDHLAPTMKAASLHAVFTPIKGLFKYAAQEEILDVN 339 Query: 157 PCLSVERPKRKT----EGIRPWTKEDM----QQFKSFWSEG-----SQPRLAFE----FL 199 P ++ P+ K + + E+ + + W + R A L Sbjct: 340 PASALVLPRDKRSIEERKRKKFDPEEACRIDEAISAVWGNPVYGLSDKRREALSQVVRAL 399 Query: 200 LYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-ELPDGFMKLLAMTPIGKETFFIN 258 +++G+R + R +++++ + KT + + L G + F + Sbjct: 400 MFTGMRPIEILRLQPHDVEDHLIRVTDSKTESSTRIVPLHPELKSFPKWVREGGLSTFAS 459 Query: 259 NDKQKMNATQ--FSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWK 314 + + FS + K + ++ K+ + +R AGA A G K Sbjct: 460 VTSDPVGPVRHNFSRLIRTKLSPPILDDRKTLYSLRTTFVNAMRRAGADIQMRRAILGHK 519 Query: 315 TVDQAETY 322 Y Sbjct: 520 EAGAIRHY 527 >gi|16077547|ref|NP_388361.1| phage integrase [Bacillus subtilis subsp. subtilis str. 168] gi|221308305|ref|ZP_03590152.1| hypothetical protein Bsubs1_02718 [Bacillus subtilis subsp. subtilis str. 168] gi|221312627|ref|ZP_03594432.1| hypothetical protein BsubsN3_02694 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221317550|ref|ZP_03598844.1| hypothetical protein BsubsJ_02653 [Bacillus subtilis subsp. subtilis str. JH642] gi|221321826|ref|ZP_03603120.1| hypothetical protein BsubsS_02724 [Bacillus subtilis subsp. subtilis str. SMY] gi|81556749|sp|P96629|INT_BACSU RecName: Full=ICEBs1 integrase gi|1881291|dbj|BAA19318.1| ydcL [Bacillus subtilis] gi|2632780|emb|CAB12287.1| putative phage integrase [Bacillus subtilis subsp. subtilis str. 168] Length = 368 Score = 102 bits (255), Expect = 7e-20, Method: Composition-based stats. Identities = 58/329 (17%), Positives = 98/329 (29%), Gaps = 36/329 (10%) Query: 25 FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHW 84 F G RIR + + A + E R + LIS Y S Sbjct: 19 FDPITGERIRTRPVASTRKEALELEAKLRREFQEERARKSRSV--SFPTLISIYLASCEI 76 Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTK---HIRSGVESRKHTPSSAIQFLTSMR 141 S + I D +KIT + R + + S +TS+ Sbjct: 77 DSKPNYYQNQKYIINKHISDYFLKSDIQKITHREITDFRKHLMETGLSNKSVNNIMTSLS 136 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP-RLAFEFLL 200 +F AV +E + NPC +V+R + ++ W E+ ++F S + + + Sbjct: 137 KIFDTAVHEEILKRNPCDNVKRLPLTRKKMKFWRPEEFKKFISLIPQDQLLFKTFYTVAF 196 Query: 201 YSGLRCSDSCRAGVQHLQ---------------NNIFSIKTQKTGTII-TVELPDGFMKL 244 +GLRC + + + + F + T KT I V + +KL Sbjct: 197 LTGLRCGEMLALQWKDIDKILLEIDVHKSCTWLDGQFVVTTPKTKNSIRRVSINKKLLKL 256 Query: 245 LAMTP-------------IGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVR 290 L +T+ FS K + + H R Sbjct: 257 LERWKEAQEELFNELGIRHSHDTYIFQYKDTPSRKDIFSRKIKYFCKDSDLTPIRLHDFR 316 Query: 291 KFSATISADAGATAHELMATYGWKTVDQA 319 + G + G +V Sbjct: 317 HSHVALLIHQGEDYITIKERLGHGSVKTT 345 >gi|167993847|ref|ZP_02574940.1| integrase [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168241496|ref|ZP_02666428.1| integrase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168462602|ref|ZP_02696533.1| integrase [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|194448390|ref|YP_002045925.1| integrase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|197262125|ref|ZP_03162199.1| integrase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|194406694|gb|ACF66913.1| integrase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|195633903|gb|EDX52255.1| integrase [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197240380|gb|EDY23000.1| integrase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|205328220|gb|EDZ14984.1| integrase [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205339104|gb|EDZ25868.1| integrase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|312912865|dbj|BAJ36839.1| integrase [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321224515|gb|EFX49578.1| Phage integrase [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] Length = 284 Score = 102 bits (255), Expect = 7e-20, Method: Composition-based stats. Identities = 48/285 (16%), Positives = 95/285 (33%), Gaps = 34/285 (11%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----K 127 I Y +L+VN+ + + K G+ ++TT+HI +ES K Sbjct: 2 SAWIDRYEVLLQRRNLSVNTYKIRSNQLATVREKMGEIILAEVTTRHIAKFLESWITEGK 61 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 +T + A++ + + +F+ A+ + ++ NP + P+ K R ++ + + + Sbjct: 62 NTMAGAMR--SVLSDMFREAIVEGHIVKNPVEATRIPEIKVARERL----QLETYNATRA 115 Query: 188 EGSQPRLAF----EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243 F + L +G R D + +N + KTG I + L Sbjct: 116 AAEHMPAWFPLAMDLALVTGQRREDIVNMKFSDVFDNRLYVTQIKTGMKIAIPLSLTLRA 175 Query: 244 --------LLAMTPIGKETFFI------NNDKQKMNATQFSIWFKAKATKAGVNKS---- 285 + + + F I N+ ++ + F +GVN S Sbjct: 176 TGLRLGTVIDRCRLVSRTDFMISAGIRKNSPTGNIHPDGLTKTFVKARKASGVNFSNNPP 235 Query: 286 -AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 H +R A G + + + Y D Sbjct: 236 TFHEIR-SLAGRLYKNEHGEVFAQKLLGHTSENTTKLYLDERDNK 279 >gi|308069238|ref|YP_003870843.1| Site-specific recombinase XerC [Paenibacillus polymyxa E681] gi|305858517|gb|ADM70305.1| Site-specific recombinase XerC [Paenibacillus polymyxa E681] Length = 318 Score = 102 bits (255), Expect = 7e-20, Method: Composition-based stats. Identities = 37/277 (13%), Positives = 92/277 (33%), Gaps = 25/277 (9%) Query: 91 SRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS---SAIQFLTSMRVLFKWA 147 ++ ++ Q +R + ++ H+ S + + + + + ++ FK Sbjct: 40 TQKNYMGDVKQFLRTLREKPLDQVKKIHVMSYLSKAREGGAGDSTRNRKHAAVNSFFKAL 99 Query: 148 VRQEYVAINPCLSVERPKR-KTEGIRPWTKEDMQQFK--SFWSEGSQPRLAFEFLLYSGL 204 E + NP +++ K K ++D+ F ++ F ++Y GL Sbjct: 100 QEFELCSTNPAAGIKKAKTEKNRMPVYLDEKDIHPFLLAVEGKYANRNMAIFLLMVYMGL 159 Query: 205 RCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG--------FMKLLAMTPIGKETF 255 R + V ++ K T+ +P+ + L ++ Sbjct: 160 RVGEVHSLNVSDYSRERRTLDVFGKGRKWRTLPVPEAVCDFVEHALEERLTPWRGKEDAM 219 Query: 256 FINNDKQKMNATQFSIW----FKAKATKAGVNK----SAHGVRKFSATISADAGATAHEL 307 F++ +++ F+ + + S+H +R AT+ GA + Sbjct: 220 FVSQKGRRLAVRTIQQIATETFERFQQDKSIERREAYSSHKLRHTFATMLLRKGADLRTV 279 Query: 308 MATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344 G ++ YT +R + K ++ + Sbjct: 280 QELLGHSSIQTTTVYTHVTNREK--EKAMDKLDIQIP 314 >gi|23014445|ref|ZP_00054261.1| COG0582: Integrase [Magnetospirillum magnetotacticum MS-1] Length = 394 Score = 102 bits (255), Expect = 7e-20, Method: Composition-based stats. Identities = 57/347 (16%), Positives = 113/347 (32%), Gaps = 31/347 (8%) Query: 25 FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYIN--------SPRKKPTTLKWLIS 76 +R G +R R+ + A G+ + + + R P T++ L Sbjct: 47 YRIGGRQR-RITIGSYPDWSVAAARTEAGNLKREVDLGNDPMGERHADRAAP-TMRDLWD 104 Query: 77 EYRKSAHWGSLAVNSRISFESYFDQII------RKSGDFDYRKITTKHIRSGVESRKHTP 130 Y++ H A S+ +++++ K GD + I H + + TP Sbjct: 105 RYKRD-HLPRKAARSQADETMMWEKLVLPTLGKHKVGDVTHTDIEALH--RDITVSRGTP 161 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 A + + +R F A+R E++ NP + + + R + E++ + + + Sbjct: 162 VRANRVIEVVRRAFNLAIRWEWIEKNPASG-QLRNPEEKRQRYLSPEELSRLSAALTAHH 220 Query: 191 QP--RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT----QKTGTIITVELPDGFMKL 244 +P A L+ +G R S+ A + + K V + + L Sbjct: 221 EPVSADAIRMLMLTGARKSEVLGATWEMFDLDAGVWTKPSAHTKQRKEHRVPVSANALTL 280 Query: 245 LAMT--PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAG 301 L F + W A A + H +R A++ G Sbjct: 281 LKRIRETAEGPYVFPGKGGDQPLTDVKRSW-AAVCKAADITGARIHDLRHSFASLLVSGG 339 Query: 302 ATAHELMATYGWKTVDQAETYTKGADR-IRLGIKNSRRISSVVDSDD 347 A+ + A G V + Y D +R + + + Sbjct: 340 ASLPIIGAMLGHTQVQTTQRYAHLYDEPLRAAADHVGKTIDMAGEKK 386 >gi|255004532|ref|ZP_05279333.1| integrase/recombinase ripx (xerC) [Anaplasma marginale str. Virginia] Length = 311 Score = 102 bits (255), Expect = 7e-20, Method: Composition-based stats. Identities = 38/276 (13%), Positives = 92/276 (33%), Gaps = 28/276 (10%) Query: 73 WLISEYRKSAHWGSLAVNSRIS-FESYFDQIIRK-SGDFDYRKITTKHIRSGVESR---- 126 WL E R S + + + + S + + + +++ + RS + R Sbjct: 16 WLREERRYSPNTVAAYERDIMDFYRSVCGEPCERSVSLQEVQELRSAEFRSWLADRFKQG 75 Query: 127 KHTPSSAIQFLTSMRVLFKWAV-RQEYVAINPCLSVERPKRKTEGIRPWTKEDM----QQ 181 K + S+A + ++ +R F++ + + + +P + + + M ++ Sbjct: 76 KQSASNA-RAISVVRSFFRYLHHKCGMKSS--VVFNTKPIVRRSLPKVLEEPQMRKVMEE 132 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241 + + L GLR S++ L+ + + K + + Sbjct: 133 PEDLHWTHRRDLAVSALLYGCGLRISEAVNIKFCDLRQDELRV-LGKGSKERVIPILPWV 191 Query: 242 MKLLA-----------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHG 288 ++ E F+ +++ T F+ K + G+ ++ H Sbjct: 192 RCIIDEYVASCPHQRVHGASSTEYVFVGLRGGRLSRTYFAYRMKGLRRRIGLPETTTPHT 251 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 +R AT GA + G ++ + YT Sbjct: 252 LRHSFATHLFLEGADIRVVQELLGHASLATTQVYTH 287 >gi|313125477|ref|YP_004035741.1| site-specific recombinase xerd [Halogeometricum borinquense DSM 11551] gi|312291842|gb|ADQ66302.1| site-specific recombinase XerD [Halogeometricum borinquense DSM 11551] Length = 310 Score = 102 bits (255), Expect = 7e-20, Method: Composition-based stats. Identities = 41/276 (14%), Positives = 96/276 (34%), Gaps = 27/276 (9%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQII-RKSGDFDYRKITTKHIRSGVE---SRKHTP 130 I+E+ S + + + + + D + H+ + R Sbjct: 17 INEFLTSKTTTGRSHRTINEYSRTLQRFFHEHFPELDPEDVEVHHVEQYLRILVERDLAQ 76 Query: 131 SSAIQFLTSMRVLFKWAVRQ---EYVAINPCLSV--ERPKRKTEGIRPWTKEDMQQFKSF 185 ++ ++L S+ + WA+++ E + NP V E PK+ + T E+ ++ Sbjct: 77 NTKRRYLESLSSFYAWAMKRPRYEDITGNPAAVVLEEVPKQIHDRPDCATWENAEKIVHA 136 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDGFMK 243 + + + L +G R +++ + L ++ + +K G + + D ++ Sbjct: 137 IDDP-RDKTVAVVLAKTGCRVTEALTITREDLLLEDGFIRLTNRKGGKTTVIPVDDETVR 195 Query: 244 LLAMTP----IGKETFFINND-KQKMNATQFSIWFKAKATKAGV----------NKSAHG 288 ++ E F ++ ++ + + A K GV + H Sbjct: 196 MIQRLQFIDQNTSEYLFASSRTGNQLTRERIRRKVREAAVKTGVMEEGETRFHKKFTPHT 255 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 R T+ + G H L G + + YT+ Sbjct: 256 FRTVFTTLMRNQGMPDHILQYIRGDSESETIDIYTR 291 >gi|319899487|ref|YP_004159584.1| integrase/recombinase XerD [Bartonella clarridgeiae 73] gi|319403455|emb|CBI77026.1| integrase/recombinase XerD [Bartonella clarridgeiae 73] Length = 312 Score = 102 bits (255), Expect = 7e-20, Method: Composition-based stats. Identities = 45/286 (15%), Positives = 97/286 (33%), Gaps = 33/286 (11%) Query: 72 KWLISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH-----IRSGVES 125 +I + + + +V + +++ K + + + + S +++ Sbjct: 4 SAVIDRFLEMMSAERGASVRTLFAYQHDLQWAQNKLSSYSLSFFSAQREDLINLLSLMQT 63 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 +S + L+++R F++ + +P ++ P++ + +++ + + F Sbjct: 64 AGCAATSQARRLSTLRQFFQFLYAEGLRGDDPSSDIDSPRQGRPLPKIISEDAVTKLLDF 123 Query: 186 WSEGSQP--------------RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231 + ++ E L +GLR S+ VQ ++ I + G Sbjct: 124 AQLETDQAEYGSQEYFRALRFQVLLEMLYATGLRISELVSLPVQAVRRKEQFILVRGKGE 183 Query: 232 IITVELPDG-----FMKLLAMTPIGKET----FFINNDKQKMNATQFSIW-FKAKATKAG 281 V L K L + GK+ F A QF K A +AG Sbjct: 184 KERVVLLSEKARQILSKWLVLRDQGKDAKSFYLFPARSSTGYIARQFVARGLKDLAKRAG 243 Query: 282 V---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 + N S H +R A+ GA + G + + YT Sbjct: 244 IQSENFSPHVLRHAFASHLLQNGADLRAVQHLLGHCDISTTQVYTH 289 >gi|52841304|ref|YP_095103.1| integrase, phage related [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52628415|gb|AAU27156.1| integrase, phage related [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 393 Score = 102 bits (255), Expect = 7e-20, Method: Composition-based stats. Identities = 63/361 (17%), Positives = 125/361 (34%), Gaps = 33/361 (9%) Query: 19 GKIIYYFR---KGHGRRIRL-PYP-HESTFIPAYMSALT-----GSTPKREYINSPRKKP 68 G +++R G +++ L YP Y++ G P K+ Sbjct: 34 GNKSWFYRFSMNGKRQKMTLGKYPAISLKQAREYLAKAQSLKEQGINPIENTKLEKLKED 93 Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--R 126 T LI + ++ + I ++ +II GD K+ TK I ++ + Sbjct: 94 NTFSKLIQSWYENYAVKNRKQPRPIKYQ-IDSEIIPLLGDTVLDKLQTKDITIALDKIVQ 152 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV---ERPKRKTEGIRPWTKEDMQQFK 183 + P A + L++++ + +AV + Y+ NP ++ + + R + E+++ Sbjct: 153 RGAPIHANRILSTIKQVLNYAVSRGYIQYNPATNIRSRDIGGIEKPRERVLSPEEIRIIW 212 Query: 184 SFWSEG-----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT----QKTGTIIT 234 F RLA + ++ +G+R + A K G + Sbjct: 213 KFLESDKSQMSESARLAIKVIILTGVRTGEIRLAQWHQFDFEQSLWTIPPEHSKGGITVK 272 Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQ---KMNATQFSIWFKAKATKAGVN-KSAHGVR 290 + L + KLL + F+ M+ K + G+ +AH +R Sbjct: 273 IHLSELTKKLLLQFKEQSVSPFVIPGITIDVPMSKDALPRAIKRIQNRVGIPEWTAHDLR 332 Query: 291 KFSATISADAGA-TAHELMATYGWKTVDQAETYTKGA---DRIRLGIKNSRRISSVVDSD 346 + AT ++ + G K TY K R + I+ ++ S Sbjct: 333 RTFATQLGESLNIDPVVIEKCLGHKMPRIMATYNKNEMLPQRKEALDSWANHIARLISSK 392 Query: 347 D 347 D Sbjct: 393 D 393 >gi|317477406|ref|ZP_07936636.1| phage integrase [Bacteroides eggerthii 1_2_48FAA] gi|316906434|gb|EFV28158.1| phage integrase [Bacteroides eggerthii 1_2_48FAA] Length = 239 Score = 102 bits (255), Expect = 7e-20, Method: Composition-based stats. Identities = 40/201 (19%), Positives = 69/201 (34%), Gaps = 11/201 (5%) Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193 Q + +++ ++ + QE C V R KR+ +KE++++ + Sbjct: 23 NQRINAIKFYYEKVLGQERR----CYKVNRAKREKTLPDVLSKEEIKKILDATVTDLRFF 78 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTIITVELPDGFMKLL---AMT 248 F L +GLR S+ + + ++ K L MK L Sbjct: 79 CMFSILYSAGLRISELLELKPGDINESRSLIRVRQGKGKKDRYTLLSKPLMKKLTEYNRL 138 Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHE 306 K F + + + S KA A +AG+ K H +R AT + G Sbjct: 139 YKPKVWLFEHRPGEPFTESIVSKRLKAAAREAGITKRIYPHLLRHSFATHLLEQGTDIKI 198 Query: 307 LMATYGWKTVDQAETYTKGAD 327 + G + E Y AD Sbjct: 199 VKELMGHNNIKTTERYVHIAD 219 >gi|229188211|ref|ZP_04315287.1| DNA integration/recombination/invertion protein [Bacillus cereus BGSC 6E1] gi|228595231|gb|EEK52975.1| DNA integration/recombination/invertion protein [Bacillus cereus BGSC 6E1] Length = 382 Score = 102 bits (255), Expect = 8e-20, Method: Composition-based stats. Identities = 50/319 (15%), Positives = 94/319 (29%), Gaps = 40/319 (12%) Query: 45 PAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR 104 A+ K T + E+ K + L + ++Y +I+ Sbjct: 46 REAHDAMLILKAKMLSGERSDLSKLTYAAYVDEWMKERTFH-LQETTYEIHKTYIANVIK 104 Query: 105 -KSGDFDYRKITTKHIRSGVESRK----HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCL 159 + G F R+I H++ V ++P++ + K A + + NP + Sbjct: 105 PRLGHFQMREIEPIHMQKFVNELAIDIGYSPATVHLIYRIVSASLKKAKVLKLIDENPTI 164 Query: 160 SVERPK-RKTEGIRPWTKEDMQQFKSFWS---EGSQPRLAFEFLLYSGLRCSDSCRAGVQ 215 + PK RKT I WT E++ F + ++ + L +G+R + + Sbjct: 165 GITLPKLRKTSEINVWTLEEVNHFINEGKNVYRSTRMYICCVIALLTGMRQGEIMGLRWK 224 Query: 216 HLQ--NNIFSIKT-----------QKTGTII-----TVELPDGFMKLLAMTPIGKET--- 254 + N I I+ K I ++L + Sbjct: 225 DIDFENRIIYIRQTLTQSGKIKVGAKNNASIRNVHFPIKLIGELELHRETVKKERLYHGK 284 Query: 255 -------FFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHE 306 + I F K G+ K H +R AT+ Sbjct: 285 DYEDNNLVICARKGNPLIPKNGRIEFYNLTEKLGLPKIRFHDLRHTHATMLIQQNVNVKL 344 Query: 307 LMATYGWKTVDQA-ETYTK 324 + G + TY+ Sbjct: 345 ISERLGHTDIQTTLNTYSH 363 >gi|282882640|ref|ZP_06291251.1| phage integrase family protein [Peptoniphilus lacrimalis 315-B] gi|281297516|gb|EFA90001.1| phage integrase family protein [Peptoniphilus lacrimalis 315-B] Length = 327 Score = 102 bits (255), Expect = 8e-20, Method: Composition-based stats. Identities = 42/277 (15%), Positives = 98/277 (35%), Gaps = 14/277 (5%) Query: 59 EYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH 118 + S ++K T+ + + + + + S ++S + ++ + D ++I T Sbjct: 37 DVTESKQQKKTSEQNFVELFLSAKRIEGCSEKSLKYYKSTIEAMLDEL-KKDVKRIVTDD 95 Query: 119 IRSGV----ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174 IR + E +K + + + F W ++Y+ +P + + K T + Sbjct: 96 IREYLTEYQEKKKSSKVTIDNIRRILSSFFSWLEDEDYILKSPVRRIHKVKTGTNIKETY 155 Query: 175 TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT 234 + E ++ + +E + + L +G+R + + N G+ Sbjct: 156 SDEALELMRDNCTE-LRDLAIIDMLASTGMRVGEMVLLNRNDIDFNERECIVFGKGSKER 214 Query: 235 VELPDG-----FMKLLAMTPIGKETFFIN--NDKQKMNATQFSIWFKAKATKAGVNK-SA 286 V D L F++ + +++ + + K G+ K Sbjct: 215 VVYFDARTKIHLQNYLKSRTDDNPALFVSLKSPHERLKIGGVEVRLREYGKKLGLQKVHP 274 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 H R+ AT++ D G +L G + +D Y Sbjct: 275 HKFRRTLATMAIDKGMPIEQLQQLLGHRKIDTTLQYA 311 >gi|260891942|ref|YP_003238039.1| integrase family protein [Ammonifex degensii KC4] gi|260864083|gb|ACX51189.1| integrase family protein [Ammonifex degensii KC4] Length = 383 Score = 102 bits (254), Expect = 8e-20, Method: Composition-based stats. Identities = 44/302 (14%), Positives = 101/302 (33%), Gaps = 45/302 (14%) Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVE 124 + TL + E+ A L++ + + + +I G RK++ H+ + Sbjct: 64 PEKVTLAEYLKEWHA-ARKHKLSLRTWERYGQLIEHWLIPHLGGIPLRKLSPVHLEKFIS 122 Query: 125 SR----------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174 + K +P++ + + AV++ + NP +V++P++ + Sbjct: 123 AMLEADRLDGKGKISPTTVRHAALVLNKALRDAVKKRLIPYNPMEAVDKPRKARKEPPAL 182 Query: 175 TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ---------------- 218 + ++++ S +EG+ +Y+G R + + + Sbjct: 183 KEGELRRLMS-AAEGTYLYAPITLAVYTGARLGEILGLRWRDVDFEAGCIFILQALKRNL 241 Query: 219 NNIFSIKTQKTG-TIITVELPDGFMKLLAMTPI--------------GKETFFINNDKQK 263 KT + +E+ + L D Sbjct: 242 KGELYFDEPKTPRSRRRIEIGPACLAALRKQKKLQAEWKLKAGSAWQETGLVCTREDGSP 301 Query: 264 MNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETY 322 ++ FS F+ A+K G++ + H +R AT+ AG + G +V + Y Sbjct: 302 IDPHAFSSAFRKLASKLGIDANFHALRHTHATMLLKAGVHLKIVSERLGHASVAITGDLY 361 Query: 323 TK 324 + Sbjct: 362 SH 363 >gi|238923684|ref|YP_002937200.1| site-specific tyrosine recombinase [Eubacterium rectale ATCC 33656] gi|238875359|gb|ACR75066.1| site-specific tyrosine recombinase [Eubacterium rectale ATCC 33656] Length = 331 Score = 102 bits (254), Expect = 8e-20, Method: Composition-based stats. Identities = 40/275 (14%), Positives = 97/275 (35%), Gaps = 16/275 (5%) Query: 76 SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQ 135 Y + +++ S + K + + KI+T IR + + + + Sbjct: 57 ETYFVTRKIEGMSMKSLELYNLVLKDFFFKL-NKEICKISTNDIRVYLYKNQQERNLSNS 115 Query: 136 FLTS----MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191 L + + F+WA + Y+ NPC +++ K + +P T ++++ ++ + Sbjct: 116 TLDTKRTIIHAFFEWAANEGYIGSNPCRNIKPIKYERPKRKPLTGIELEKVRNACD-NLK 174 Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL-----LA 246 + E +G R ++ R + + + G + + ++ L Sbjct: 175 DKALLELFYSTGCRVTEMERLDISDIDFQTKEVLLFGKGDKHRISYLNAKAEIAIRNYLD 234 Query: 247 MTPIGKETFFINNDK--QKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGA 302 +E F+++ K ++ + K+G+ + H +R +AT D G Sbjct: 235 SRNDNEEALFVSDRKPYGRLKKPAIEKRIRVLGEKSGIGRRLYPHLIRHTTATDGLDRGM 294 Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 E+ G + Y R + + + Sbjct: 295 PVEEVQQILGHVNIATTMIYA-EVSRANVKNNHRK 328 >gi|260642793|ref|ZP_05417338.2| tyrosine type site-specific recombinase [Bacteroides finegoldii DSM 17565] gi|260620552|gb|EEX43423.1| tyrosine type site-specific recombinase [Bacteroides finegoldii DSM 17565] Length = 368 Score = 102 bits (254), Expect = 8e-20, Method: Composition-based stats. Identities = 39/260 (15%), Positives = 83/260 (31%), Gaps = 13/260 (5%) Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTPSSAI 134 Y + ++++ +++ YF + D +T + I S + KH ++ Sbjct: 96 YLELLEQKRYSLSTIKAYKIYFSDFMEYHKGQDLDLLTVEDINSYMLHMVKEKHISATQQ 155 Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194 + + VR+ + R K ++E+M+ + S R Sbjct: 156 NMRINAIKFYYEKVRKGKRQY--YGGIARAKEYKALPEVLSREEMKSIFAQLSNRKH-RC 212 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-----ITVELPDGFMKLLAMTP 249 + +GLR S+ Q + + I+ G ++ +L + Sbjct: 213 MISLIYSAGLRRSELLNLTPQDIISERMLIRIAGKGKKCRYSLLSEKLLNELRDYYREYR 272 Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHEL 307 K F ++ + + K A KAG+ H +R AT + G + Sbjct: 273 PQKWLFEGEQAGEQYSPSALVKILKEAARKAGIKHRVHLHMLRHTFATHLLEQGTDLRTI 332 Query: 308 MATYGWKTVDQAETYTKGAD 327 G + Y ++ Sbjct: 333 QELMGHTDIKTTAIYLHVSN 352 >gi|146337735|ref|YP_001202783.1| site-specific tyrosine recombinase [Bradyrhizobium sp. ORS278] gi|146190541|emb|CAL74543.1| site-specific tyrosine recombinase [Bradyrhizobium sp. ORS278] Length = 308 Score = 102 bits (254), Expect = 8e-20, Method: Composition-based stats. Identities = 43/278 (15%), Positives = 85/278 (30%), Gaps = 38/278 (13%) Query: 90 NSRISFESYFDQIIRKS-----GDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLF 144 N+ ++ + G + + ++ R SS + L++MR LF Sbjct: 17 NTLDAYRRDLIDLSEFLTRKGNGFAAADTQALRDYLANLDLRGFKSSSVARRLSAMRHLF 76 Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE--------------GS 190 ++ + + + +P + PKR + + D+ + + E Sbjct: 77 RFLLSERIRSDDPAAILSGPKRGRALPKVLSIGDVDRMLTKAKELSEVADASLSQRLRAL 136 Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELP--------DGF 241 + E L +GLR S+ +N+ + K V L D Sbjct: 137 RLYCLLEVLYATGLRVSELVALPRTAARNDARMIVVRGKGNKERLVPLNQASRQAMADYL 196 Query: 242 MKLLAMTPIGKET-----FFINNDK--QKMNATQFSIWFKAKATKAGVNK---SAHGVRK 291 L P K + + + + F+ K A +G+ S H +R Sbjct: 197 AMLDRQKPHAKASATFGKWLFPSFGESGHLTRQHFARDLKELAAASGLPARLVSPHVLRH 256 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 A+ GA + G + + YT + Sbjct: 257 AFASHLLHNGADLRIVQTLLGHTDISTTQIYTHVVEER 294 >gi|221133407|ref|ZP_03559712.1| Tyrosine recombinase xerC [Glaciecola sp. HTCC2999] Length = 383 Score = 102 bits (254), Expect = 8e-20, Method: Composition-based stats. Identities = 51/290 (17%), Positives = 87/290 (30%), Gaps = 19/290 (6%) Query: 58 REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSR--ISFESYFD-QIIRKSGDFDYRKI 114 + +P TL +Y W + R + ES + +I G I Sbjct: 90 PPIVQTPPTCALTLNEFWEQYY----WPHIKTRLRTFRNIESMWRLRIKPIFGKQRLDDI 145 Query: 115 TTKHIRSGVESRKHTPSSAIQF---LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171 + S S + + +F A++ E + NPC VE K + Sbjct: 146 KVLELERFQTSLIEKRLSGSHVTGHIKLISRMFTLAIQWELITKNPCDKVEYMKFDNQKE 205 Query: 172 RPWTKEDMQQFKSFWSEGSQ--PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT--- 226 R + E+ ++F Q L FLL +G+R + + + I Sbjct: 206 RFLSTEEQKRFIEVLMLHPQRPVNLLMIFLLVTGVRSGVAKALKWSWINMDKQIITVPPS 265 Query: 227 -QKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS 285 K T+ L M +L T+ N + F FK A ++ S Sbjct: 266 IAKNKKQNTIFLNTTAMDILKRLAGTDPTYVFINPMTHLPYNDFKKSFKTALKAAQISDS 325 Query: 286 --AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLG 332 H +R + + + + Y K D +R Sbjct: 326 VRIHDLRHTFCSNLVSSNVSLASVQQLANHACYSTTLRYAKVSQDTLRQA 375 >gi|24373721|ref|NP_717764.1| phage integrase family site specific recombinase [Shewanella oneidensis MR-1] gi|24373766|ref|NP_717809.1| phage integrase family site specific recombinase [Shewanella oneidensis MR-1] gi|24348094|gb|AAN55208.1|AE015659_2 site-specific recombinase, phage integrase family [Shewanella oneidensis MR-1] gi|24348149|gb|AAN55253.1|AE015663_3 site-specific recombinase, phage integrase family [Shewanella oneidensis MR-1] Length = 287 Score = 102 bits (254), Expect = 8e-20, Method: Composition-based stats. Identities = 42/269 (15%), Positives = 90/269 (33%), Gaps = 25/269 (9%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE----SRK 127 L+ ++ + +R ++ Q+ + + IT + + + Sbjct: 2 SSLLQQFHDEISLRGYSARTRNAYLYAITQL-QHYANQPLDNITDEQLTAYFRYLNLEWH 60 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 H+ ++ L + ++ +++++ + + PKR + + + +D+ + Sbjct: 61 HSRATLKLQLNGIHFFYEHVLKRDF-----TIQLSLPKRPHKLPQLLSCQDIAALL-YHC 114 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLL 245 + + R GLR S+ V + +K K V L + LL Sbjct: 115 QNLKQRAMLALCYGCGLRVSELTHIKVADIDGQRQLLKVCQGKGACDRWVILSPTLLILL 174 Query: 246 AMT-----PIGKETFFINNDK---QKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSAT 295 P+ E F + ++ + F A A + S H +R AT Sbjct: 175 RQYWQAYHPV--EWLFASTYHDVVYPLHESTFRKALAKAARLASITKPCSPHSLRHAYAT 232 Query: 296 ISADAGATAHELMATYGWKTVDQAETYTK 324 AG H+L A G ++ E Y Sbjct: 233 HQLQAGMPLHQLQAQLGHHSIKSTERYLH 261 >gi|295696281|ref|YP_003589519.1| integrase family protein [Bacillus tusciae DSM 2912] gi|295696714|ref|YP_003589952.1| integrase family protein [Bacillus tusciae DSM 2912] gi|295411883|gb|ADG06375.1| integrase family protein [Bacillus tusciae DSM 2912] gi|295412316|gb|ADG06808.1| integrase family protein [Bacillus tusciae DSM 2912] Length = 293 Score = 102 bits (254), Expect = 8e-20, Method: Composition-based stats. Identities = 39/274 (14%), Positives = 91/274 (33%), Gaps = 21/274 (7%) Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE---- 124 + ++ + + L+ N+ + +I + ++ + R + Sbjct: 2 GAHQHVLQQMTEDLRLRGLSPNTVDVYTRAA-RIFLEFCKRPVDQLDVQDARRFLLFLIC 60 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 +K + ++ + ++R LF + + NP L + R K + ++ ++ Sbjct: 61 EKKRSAATVNVYNAAVRFLFAVTLNR---TFNP-LQIPRQKMPKTLPQVLSRPEIASILE 116 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTI--------ITV 235 + + F + SGLR S++ QH+ + G + Sbjct: 117 HC-HNLKHKALFALIYGSGLRVSEAAAIKTQHIDSRTMRVFVQGGKGAKDRYTVLSHTAL 175 Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFS 293 +L + K T F + + S F +A ++K S H +R Sbjct: 176 QLLREYWKAYRPTHPEGWLFLGTYSLAHITSAAISRAFGDALKRAQISKEVSIHSLRHSF 235 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 AT + G + ++ G ++ Y A+ Sbjct: 236 ATHLLEDGVSLLQIKELLGHASIRSTTVYLHLAN 269 >gi|228963415|ref|ZP_04124576.1| Prophage LambdaBa04, site-specific recombinase, phage integrase [Bacillus thuringiensis serovar sotto str. T04001] gi|228796309|gb|EEM43756.1| Prophage LambdaBa04, site-specific recombinase, phage integrase [Bacillus thuringiensis serovar sotto str. T04001] Length = 375 Score = 102 bits (254), Expect = 8e-20, Method: Composition-based stats. Identities = 46/292 (15%), Positives = 95/292 (32%), Gaps = 37/292 (12%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH 128 TL + E+ ++ + + I++ + +II G + + H + V+S Sbjct: 65 TLSEYLQEWLENTAKQRVRDTTFINYRRAVNSRIIPVIGSHKLKDLKPLHGQRFVKSLID 124 Query: 129 ---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 +P ++ + AV+ E + NP VE P+ + W+ E+ + F ++ Sbjct: 125 EELSPKYIEYIFIVLKGALEDAVKWELLYKNPFEHVEIPRPRKVVNNTWSIEETKTFLTY 184 Query: 186 WSEGSQPRLA-FEFLLYSGLRCSDSCRAGVQHL---------------QNNIFSIKTQKT 229 + F L +G+R + +++ F KT Sbjct: 185 AKFDNPIYYHLFLLALNTGMRRGELLGLKWKNVDLVEGKISVTETLIYDELGFRFTEPKT 244 Query: 230 -GTIITVELPDGFMKLLAMTPI--------------GKETFFINNDKQKMNATQFSIWFK 274 G+ + + K L + F D + + + F+ Sbjct: 245 AGSKRLISIDQSLCKELKSYKAKQNEFKLAIGKAYEDNDLVFSREDGRPIYPRTLTTVFE 304 Query: 275 AKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324 A V K H +R AT+ G + G ++ +TY+ Sbjct: 305 RFIKTAQVPKIRFHDLRHTHATLLLKLGINPKIVSERLGHNSIKTTLDTYSH 356 >gi|187734784|ref|YP_001876896.1| tyrosine recombinase XerC [Akkermansia muciniphila ATCC BAA-835] gi|187424836|gb|ACD04115.1| tyrosine recombinase XerC [Akkermansia muciniphila ATCC BAA-835] Length = 300 Score = 102 bits (254), Expect = 8e-20, Method: Composition-based stats. Identities = 44/283 (15%), Positives = 93/283 (32%), Gaps = 24/283 (8%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130 L++L E + S H + + F ++ + ++ + + Sbjct: 13 LQYLEVEKQASPHTVEVYARALRQFRAWAADSFPGWENCTPDQMRDWLFQELKDEAAT-- 70 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ-----FKSF 185 SS ++R +++ +R+ + NP V P+RK T M + +K+ Sbjct: 71 SSIRLRFAALRSFYRFMMRRHGLETNPMTGVSLPRRKKTLPVFLTLNQMLELLELPYKTA 130 Query: 186 WSEGS------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-EL- 237 + + E G+R S+ V + + +K G + + Sbjct: 131 VPANAPAWLPYRDAAILELFYSCGMRLSELVGLDVGSVDHRFRGVKVMGKGRKERILPVG 190 Query: 238 PDGFMKL-----LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVR 290 L +A P F++ +++A + + + S H +R Sbjct: 191 TPALAALETYVSMACLP-KNSPLFVSRIGTRLSARSVQMMLNKYVKLSSIPFTISPHKIR 249 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 AT +AGA + G ++ + YT R R+ Sbjct: 250 HTFATHILEAGADLRSVQELLGHASLSTTQIYTH-VTRARMAE 291 >gi|85708192|ref|ZP_01039258.1| site-specific recombinase, phage integrase family protein [Erythrobacter sp. NAP1] gi|85689726|gb|EAQ29729.1| site-specific recombinase, phage integrase family protein [Erythrobacter sp. NAP1] Length = 366 Score = 102 bits (254), Expect = 8e-20, Method: Composition-based stats. Identities = 64/338 (18%), Positives = 115/338 (34%), Gaps = 21/338 (6%) Query: 24 YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW---LISEYRK 80 + ++G RR+ L ++T A A RK + L+ EY Sbjct: 28 FRQRGKQRRVSLGTTRQNTATEARRIAREKLAEVALDGLPSRKTTKSRAKEAPLMREY-A 86 Query: 81 SAHWGSLA----VNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQ 135 W A ++R + D+ I+ GD +IT I + + + Sbjct: 87 ERFWADYAHHWKPSTRQRNRTGIDRDILPTFGDRRVDEITKADISFWRDGFAERTGAFNR 146 Query: 136 FLTSMRVLFKWAVRQEYVAI--NPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EG 189 + + V+ +A + Y + NPC R KRK R + + Q + E Sbjct: 147 TIPILSVMMGYAEQIGYRSRGSNPCRGTPRYKRK-RMERFLSAREYGQLATALDYFEAEH 205 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTP 249 S A L+Y+G RC + + +Q + KTG I V L +++ P Sbjct: 206 SAVVAAIRLLIYTGARCGEIENLSWEWVQEPRIMLPDSKTGAKI-VYLNRQAAEVITSIP 264 Query: 250 IGKET--FFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHEL 307 K T F + + W + + A + H +R A+ + + + Sbjct: 265 DRKPTGLVFPSVRDPERPMKLGMHWPEIRNRAALPDVRLHDLRHSFASTAIRDNISLMVI 324 Query: 308 MATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDS 345 G + Y +D + + R+S + S Sbjct: 325 GKLLGHALAETTSRYAHLSD--EVIADAAERVSGSIAS 360 >gi|307721281|ref|YP_003892421.1| tyrosine recombinase XerD subunit [Sulfurimonas autotrophica DSM 16294] gi|306979374|gb|ADN09409.1| tyrosine recombinase XerD subunit [Sulfurimonas autotrophica DSM 16294] Length = 275 Score = 102 bits (254), Expect = 8e-20, Method: Composition-based stats. Identities = 42/252 (16%), Positives = 87/252 (34%), Gaps = 17/252 (6%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLF 144 +L+ S +++S I +K + T+ + S + S K+ + + L+S+ F Sbjct: 16 RALSKKSVEAYKSDLCAIEKKL-SKPLICLDTQKLMSVLFSYKNK-RTLNRKLSSVNAFF 73 Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----QQFKSFWSEGSQPRLAFEFLL 200 ++ +Q + + ++ K + + ED+ G + FL Sbjct: 74 EFCYKQHFSSQ--KTKLKFAKIPKLLPKFLSYEDILSGLDLIDRTNWIGKRDYALILFLY 131 Query: 201 YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA----MTPIGKETFF 256 SG R S+ + ++ ++ K V L K + + I KE + Sbjct: 132 ASGTRISECLELMLGDIEEGWLHVRHAKGEKERIVPLAKVAKKAVDEYMFASAINKEYVW 191 Query: 257 INNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTV 316 N K++ + + S H +R AT GA + G ++ Sbjct: 192 CNYQGGKLSRISAYKITQKY-----LGVSPHVLRHSYATSLIRGGADLRVVQELLGHASL 246 Query: 317 DQAETYTKGADR 328 + YT + Sbjct: 247 LTTQIYTHIQKQ 258 >gi|325679180|ref|ZP_08158771.1| site-specific recombinase, phage integrase family [Ruminococcus albus 8] gi|324109109|gb|EGC03334.1| site-specific recombinase, phage integrase family [Ruminococcus albus 8] Length = 361 Score = 102 bits (254), Expect = 8e-20, Method: Composition-based stats. Identities = 49/285 (17%), Positives = 103/285 (36%), Gaps = 32/285 (11%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH 128 T+K L E+ S + ++ ++ + II G + I K + +E + H Sbjct: 62 TVKELALEWF-SVSKNRIKESTAANYRMKIEKHIIPPFGGMNAALIKAKAVYEFMEKKLH 120 Query: 129 TPSSAIQF---LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 SA + ++ +F++A +EY N + PK+ I +K++ ++ ++ Sbjct: 121 DGLSARYISDIMVVLKSIFRYAA-REYRINNVIDGIIMPKKAKPEITIMSKDEQKRLVTY 179 Query: 186 WSEG-SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-------------KTG- 230 ++ S L LY+G+R + C +++ + + KT Sbjct: 180 INDNRSTSTLGVALSLYTGMRIGEVCALRWENIDTEKRVLTVRHTIQRIQCFEGDNKTKV 239 Query: 231 ---------TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281 + + +PD + +L F + ++ + FK AG Sbjct: 240 IIAEPKSQSSRREIPIPDCLIPMLKELKGKNSAFILTGTEKPIEPRTMQYRFKRILENAG 299 Query: 282 V-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324 V + H +R A+ + + G L G +V + Y Sbjct: 300 VREYNYHVLRHCFASGAIELGFDVKTLSEILGHSSVQITLDRYIH 344 >gi|83950126|ref|ZP_00958859.1| tyrosine recombinase [Roseovarius nubinhibens ISM] gi|83838025|gb|EAP77321.1| tyrosine recombinase [Roseovarius nubinhibens ISM] Length = 305 Score = 102 bits (254), Expect = 8e-20, Method: Composition-based stats. Identities = 50/280 (17%), Positives = 91/280 (32%), Gaps = 31/280 (11%) Query: 81 SAHWGSLAVNSRISFESYFDQIIR--------KSGDFDYRKITTKHIRSGVESRKHT--- 129 S + N+ ++ + + ++G +I+ +RS + + Sbjct: 17 SRALKGQSDNTIEAYGRDVAEFLTFMSLHLGGEAGIAALGRISVTDMRSWMAQMRSGGEV 76 Query: 130 -PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM--------Q 180 P S + L++++ +W +E LS+ PK + RP + E Q Sbjct: 77 GPRSLARKLSAVKSFIRWLAEREGFDPTAVLSMRSPKFTRKLPRPLSAEHARDVIETAGQ 136 Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL--- 237 Q + W GS+ L GLR S++ + L K G V + Sbjct: 137 QSSAPW-IGSRDMAVITLLYGCGLRISEALSLTGESLPLGEMLRIRGKGGKERLVPVIGA 195 Query: 238 ---PDGFMKLLAMTPIG-KETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRK 291 L P+ F ++ + + G+ SA H +R Sbjct: 196 ARAAVAEYAKLCPYPLDEGAPLFRGARGGPLSPRIVQKVVQQVRMQLGLPASATPHAMRH 255 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 AT +AG + G ++ + YT D RL Sbjct: 256 SFATHLLNAGGDLRTIQELLGHASLSTTQAYT-AVDTARL 294 >gi|224024153|ref|ZP_03642519.1| hypothetical protein BACCOPRO_00876 [Bacteroides coprophilus DSM 18228] gi|224017375|gb|EEF75387.1| hypothetical protein BACCOPRO_00876 [Bacteroides coprophilus DSM 18228] Length = 418 Score = 102 bits (254), Expect = 8e-20, Method: Composition-based stats. Identities = 57/303 (18%), Positives = 100/303 (33%), Gaps = 44/303 (14%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISF---ESYFDQ---IIRKSGDFDYRKITT------- 116 T+ L + + L ++ S+ + + DFD I Sbjct: 110 TIDKLFDYFLATGG-NKLRPSTLKSYTATRRHLAAFVMLRYHISDFDITAIDRNFVNEFY 168 Query: 117 ---KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE-GIR 172 + R+ T + A++ + R L A E++A NP + KRKTE G Sbjct: 169 AYLQGYLRQDNKRQCTENGALKHMQRFRKLLDMACSNEWIARNPADGMHWEKRKTERGF- 227 Query: 173 PWTKEDMQQFKS--FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-----IFSIK 225 T+E++++ S R F F +Y+G D ++ + Sbjct: 228 -LTEEELKRIADAQLTPALSVLRDIFLFSVYTGTSFVDMTMLTDNNIVVGIDHSLWLNFN 286 Query: 226 TQKTGTIITVELPDGFMKLL------AMTPIGKETFFINNDKQKMNATQFSIW-FKAKAT 278 KTG ++ L + +++L F + Q + K A Sbjct: 287 RTKTGQRCSIPLLEPALRILDRYENYRRASPQARLF-------PVPTNQVTNRDLKIIAR 339 Query: 279 KAGVNK--SAHGVRKFSAT-ISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335 A V+K + H R AT I+ G + G ++ + Y K D+ L Sbjct: 340 AAHVDKNITFHVARHTFATTITLSNGIPLETVSRMLGHASIATTQIYAKIVDKKVLDDMA 399 Query: 336 SRR 338 R Sbjct: 400 QLR 402 >gi|222087447|ref|YP_002545984.1| tyrosine recombinase XerC [Agrobacterium radiobacter K84] gi|221724895|gb|ACM28051.1| tyrosine recombinase XerC [Agrobacterium radiobacter K84] Length = 311 Score = 102 bits (254), Expect = 8e-20, Method: Composition-based stats. Identities = 42/276 (15%), Positives = 89/276 (32%), Gaps = 31/276 (11%) Query: 85 GSLAVNSRISFESYFDQIIRKS-GDF-------DYRKITTKHIRSGVESRKHTPSSAIQF 136 L+ ++ ++E Q + G D + + R + +R+ + A Sbjct: 27 RRLSAHTLDAYERDTRQFLTFLTGHLGGPASINDIQALRPADFRGFLAARRKDGAGARSL 86 Query: 137 ---LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK--------EDMQQFKSF 185 L +R L ++ ++ V +V PK+ +P + ++ Q + Sbjct: 87 GRNLAGLRSLLRYLEKKGLVNAAGAGAVRSPKQPKSLPKPLSDTQAITVVSDEAQLHEEP 146 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKL 244 W ++ L GLR S++ ++ +++ T K V L + Sbjct: 147 W-IAARDAAVLTLLYGCGLRISEALDLTPDDIRPGATALRITGKGNKTRLVPLLPVVAEA 205 Query: 245 LAMTPI-------GKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSAT 295 + F K++ + + G+ + H +R AT Sbjct: 206 VERYRAICPYHLDAGSPLFRGARGGKLHPGIIQRGMQKLRSAFGLPDTATPHALRHSFAT 265 Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 G + G ++ + YT G D+ RL Sbjct: 266 HLLAGGGDLRTIQELLGHASLSTTQVYT-GVDQSRL 300 >gi|86605557|ref|YP_474320.1| phage integrase family site specific recombinase [Synechococcus sp. JA-3-3Ab] gi|86554099|gb|ABC99057.1| site-specific recombinase, phage integrase family [Synechococcus sp. JA-3-3Ab] Length = 309 Score = 102 bits (254), Expect = 8e-20, Method: Composition-based stats. Identities = 50/304 (16%), Positives = 101/304 (33%), Gaps = 37/304 (12%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK-- 127 +L L+ ++ + LA SR ++ +Q + ++ H++S + S K Sbjct: 3 SLSQLVGQFLQERQ-RDLAPASRRTYRIALEQFAKTCP-VPLPQVQPSHVQSFLNSLKGR 60 Query: 128 -------------HTPSSAIQFLTSMRVLFKWAVRQEYVAIN-PCLSVERPKRKTEGIRP 173 +P++ +++ F+WA ++ Y P ++ + R Sbjct: 61 PFRNRSGQWVHPPASPATYNLKRLALQQFFEWASQRGYFPDPLPTQAIRPARLPARLPRD 120 Query: 174 WTKEDMQQFKSFWSEGSQPRLAFE-FLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQK 228 + +Q+ S A LL GLR + VQ + ++ ++ K Sbjct: 121 LDRLLLQRVLQRAQSHSLRYAALIRLLLECGLRAQELLDLTVQDFQISPEGSLLEVRCGK 180 Query: 229 TGTIITVELPDGFMKLL-------AMTPIGKETFFINN------DKQKMNATQFSIWFKA 275 V + D +LL + F++ + + Sbjct: 181 GSKPRAVAVGDPLSELLQQYLSRERGPCAPTDPLFVSQSRCPAYRGRPLTYDGLRHIVLK 240 Query: 276 KATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335 +++ H R AT+ D G + G T YT+ A+ +R I + Sbjct: 241 LTEPEPGHQTPHQFRHSFATLLLDRGVAPEHIQHLLGHTTAAMTMRYTQRAN-LRAAIAH 299 Query: 336 SRRI 339 SR I Sbjct: 300 SRAI 303 >gi|282917374|ref|ZP_06325128.1| hypothetical protein SATG_02589 [Staphylococcus aureus subsp. aureus D139] gi|282318726|gb|EFB49082.1| hypothetical protein SATG_02589 [Staphylococcus aureus subsp. aureus D139] Length = 390 Score = 102 bits (254), Expect = 8e-20, Method: Composition-based stats. Identities = 63/385 (16%), Positives = 128/385 (33%), Gaps = 62/385 (16%) Query: 17 RHGKIIYYFRK---GHGRRIRLPYPHESTF----IPAYMSALTGSTPKREYINSPRKKPT 69 + G + +R + Y S F + + + + +P + Sbjct: 6 KRGNT-WRYRISLGKDAETGKYKYISNSGFKRKSDAKHHAEMVERQLRNGEYIAP--STS 62 Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129 T K + ++ S + + V+S + E I + + + I + V Sbjct: 63 TFKQVADDWI-SQYANDVKVSSVRAREKAIHHAIERFNNKPIQTIKKHDYQRFVNDISIQ 121 Query: 130 PSSA--IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK--------TEGIRP-WTKED 178 S +TS ++FK+A + + I P ++RPK+K TE + K++ Sbjct: 122 YSKNYVDSIVTSTNMIFKYAYDMKLIRIMPSEGIKRPKKKVSVEELEDTEIHKKFLEKDE 181 Query: 179 MQQFKSFWSEGSQPRLAFEF---LLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQ------ 227 + QF P+ +FE L Y+G+R + + NN +I Sbjct: 182 LFQFLEIAKNHHSPQNSFEVFCTLAYTGMRAGELLALKWSDIDFENNTINITKTYYNPNN 241 Query: 228 ----------KTGTII-TVELPDGFMKLLAMTPIG------------KETFFINNDKQKM 264 KT + I + + +KLL + F + + + Sbjct: 242 NKKQYQILTPKTESSIGKIPVDPHVIKLLKNYKVDVQDTWKNELYVDNNFVFTDVNGYPL 301 Query: 265 NATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE- 320 + +W K K + S H R + +AG E+ K ++ Sbjct: 302 VIKKLQLWIKVILKKTDITNKQISTHSFRHTHCALLIEAGVHIKEIQERLRHKDINTTMN 361 Query: 321 TYTKGADRIRLGIKNSRRISSVVDS 345 Y K + + S++ S ++++ Sbjct: 362 IYAKITNSYKK--DASQKFSKLMEN 384 >gi|187939931|gb|ACD39068.1| phage integrase [Pseudomonas aeruginosa] Length = 400 Score = 102 bits (254), Expect = 8e-20, Method: Composition-based stats. Identities = 50/305 (16%), Positives = 95/305 (31%), Gaps = 27/305 (8%) Query: 44 IPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-I 102 + A + ++ T++ L + + ++R+ ++ D+ I Sbjct: 73 LAQEWLAQVRRGGDPAADKAEARQAPTVEELCKRFMEDYSKKRNKPSTRVGYQGVIDRCI 132 Query: 103 IRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVA--INPCLS 160 I G + + +E + + A + + +R +F A Y NPC Sbjct: 133 IPLLGRKKVHDVKRPDVAGLMEKLSYKQTEANKAFSILRKMFNMAEVWGYRPDGTNPCRH 192 Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWS-----------EGSQPRLAFEFLLYSGLRCSDS 209 V + + +DM + RL FEF R S+ Sbjct: 193 VPMFP-AGKSTHLISDDDMGKLFRQLDKIEVEGLENYVIPLAIRLQFEFA----ARRSEI 247 Query: 210 CRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIG-KETFFINNDKQKM-- 264 + + N KTG + + + +LL+ P + + + + Sbjct: 248 VTLEWEWVDLENRRVVWPDSKTGGMSK-PMSEEAYRLLSTAPRQEGNPYVLPSPRHPAQH 306 Query: 265 --NATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 + W + + HG+R SAT A++G MA KTV Y Sbjct: 307 LTTGEYYGGWCRVLKAAGATHVGTHGIRHRSATDIANSGIPVKVGMALTAHKTVVMFMRY 366 Query: 323 TKGAD 327 D Sbjct: 367 VHTED 371 >gi|520404|gb|AAA64588.1| site-specific recombinase [Bacillus thuringiensis serovar morrisoni] Length = 306 Score = 102 bits (254), Expect = 8e-20, Method: Composition-based stats. Identities = 44/279 (15%), Positives = 100/279 (35%), Gaps = 28/279 (10%) Query: 74 LISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGD----------FDYRKITTKHIRSG 122 LIS++ S + G L + + S + + F ++T + I Sbjct: 14 LISDFISSLSQEGDLHTKTLKEYTSDLKDFVFWFENVWGKHAEDTLFHPIEVTARTIARY 73 Query: 123 VESRKHT----PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK-E 177 + T PS+ + + S++ F WA ++ V N S++ + + + E Sbjct: 74 RGHMQVTRLLKPSTINRRINSIKRYFDWAKQKGLVQTNYSKSIKFVPTEKTSPKRMSDKE 133 Query: 178 DMQQFKSFWSEGS-QPRLAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTI 232 + + G+ + R F+L++GLR + C ++ + + +++ K Sbjct: 134 EAALMHAVEKYGTLRDRAMIIFMLHTGLRSMEVCDVQIEDVIMRKRGGYVVVRSGKRNKQ 193 Query: 233 ITVELPD----GFMKLLAMTPIGKETFFINND-KQKMNATQFSIWFKAKATKAGVNK-SA 286 V L + + ++ I + F ++ +++ + A + SA Sbjct: 194 REVPLNSTARCALEEHIRLSEISQSYLFPSSKTGKRLQERAIRHILQKYIRLAKLEGFSA 253 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 H +R + A+ H L G ++ Y + Sbjct: 254 HDLRHRFGYVMAER-TPLHRLAQIMGHDNLNTTMIYVRA 291 >gi|310827610|ref|YP_003959967.1| hypothetical protein ELI_2021 [Eubacterium limosum KIST612] gi|308739344|gb|ADO37004.1| hypothetical protein ELI_2021 [Eubacterium limosum KIST612] Length = 338 Score = 102 bits (254), Expect = 8e-20, Method: Composition-based stats. Identities = 49/299 (16%), Positives = 100/299 (33%), Gaps = 37/299 (12%) Query: 66 KKPTTLKWLISEY-RKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITT---KHIR 120 K+ TL+ E+ RK G + ++ +++ ++ ++ + GD IT + Sbjct: 18 KRSVTLEAFSREWIRKRGDEGKIKESTLTNYQRIIERYLLPELGDLRLDTITVEVVQDFV 77 Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPC-LSVERPKRKTEGIRPWTKEDM 179 +E R S+ + + + + AV + NPC V + K +T + T ED Sbjct: 78 KTLERRALNTSTIRGIIGRLSSIMEKAVEAGLINKNPCGHIVIQKKWQTTTGKILTIEDQ 137 Query: 180 QQFKSFWSEGSQPR-LAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIK----------- 225 + + LA + L++G+R S+ + + N ++ Sbjct: 138 KALTHWLLAHEHNLSLAVQLGLFAGMRISEIAALQWKDIDLKNGFIQVRRNVQRVKNHDA 197 Query: 226 -TQKTGTII----------TVELPDGFMKLLAM----TPIGKETFFINNDKQKMNATQFS 270 +KT I ++ + MK L T + + Sbjct: 198 GQRKTINQIGTPKSPKAFRSIPITSILMKSLKGYEKSTVKPEAFVIAKKGGSAYDVRTIQ 257 Query: 271 IWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGAD 327 +FK + ++ H +R AT + ++G + G Y D Sbjct: 258 RYFKKIISVLKLDNYRFHDLRHTFATRAKESGMDIQIISEILGHSETAVTMNIYLHITD 316 >gi|300024727|ref|YP_003757338.1| integrase family protein [Hyphomicrobium denitrificans ATCC 51888] gi|299526548|gb|ADJ25017.1| integrase family protein [Hyphomicrobium denitrificans ATCC 51888] Length = 327 Score = 102 bits (254), Expect = 8e-20, Method: Composition-based stats. Identities = 49/293 (16%), Positives = 101/293 (34%), Gaps = 32/293 (10%) Query: 69 TTLKWLISEYRKSA-HWGSLAVNSRISFES----YFDQIIRKSGDFD----YRKITTKHI 119 LK + ++ + + +R ++ + + G ++ TK Sbjct: 23 GDLKRAVEDWLAHLINERGQSAATREAYARDVTQFLAFLKTHLGRAPCLGDLSRVDTKVF 82 Query: 120 RSGVESRKHT---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176 R+ + R+ + S + L+S+R F+W R+ + L V PK +P T Sbjct: 83 RAFLAHRRKSDVVSRSLARSLSSLRTFFRWLEREGRLQNRAVLQVALPKIPHSVPKPLTV 142 Query: 177 EDMQQF-------KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL---QNNIFSIKT 226 + + ++ W ++ L +GLR S++ ++ I Sbjct: 143 DGAAELVATKNDDRAEW-INARDTAVLLLLYGAGLRISEALSLTPNSAPLNGRDVMHITG 201 Query: 227 QKTGTIITVELP---DGFMKLLAMTP---IGKETFFINNDKQKMNATQFSIWFKAKATKA 280 + + LP + K + + P G F+ ++ + + Sbjct: 202 KGGKDRLVPALPIISEAIAKYMRLCPFPLSGDGPLFLGARGGPLSPRLIQLAMARMRREL 261 Query: 281 GVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 G+ + H +R AT AGA ++ G ++ + YT DR RL Sbjct: 262 GLPETATPHALRHSFATHLLSAGADLRQIQELLGHASLSTTQVYT-EVDRDRL 313 >gi|225018459|ref|ZP_03707651.1| hypothetical protein CLOSTMETH_02406 [Clostridium methylpentosum DSM 5476] gi|224948768|gb|EEG29977.1| hypothetical protein CLOSTMETH_02406 [Clostridium methylpentosum DSM 5476] Length = 329 Score = 102 bits (254), Expect = 8e-20, Method: Composition-based stats. Identities = 44/267 (16%), Positives = 90/267 (33%), Gaps = 26/267 (9%) Query: 100 DQIIRKSGDFDYRKITTKHIRSGVE----SRKHTPSSAIQFLTSMRVLFKWA-VRQEYVA 154 + +I D R ++ + + SR + + + ++S+R FK+ V + + Sbjct: 58 EILINDIDDNFIRSVSLSDVYEFLNYTMRSRSNGAKTRARKVSSLRGFFKYLTVNTQLLT 117 Query: 155 INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS-----QPRLAFEFLLYSGLRCSDS 209 NP ++E P K + E + S + L G+R S+ Sbjct: 118 DNPVKNLEIPAAKKSLPIHLSVEQSVKLLDEVGARSSGTQYRDYCILTLFLNCGMRLSEL 177 Query: 210 CRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLA----------MTPIGKETFFIN 258 + + ++K K V L + + T + K+ F++ Sbjct: 178 VGINLSSFDRDSGALKLLGKGNKERLVYLNEACQDAIDNYLTKERGQLKTIVDKDALFLS 237 Query: 259 ND-KQKMNATQFSIWFKAKATKAGVNK---SAHGVRKFSATISADAG-ATAHELMATYGW 313 +++ A Q + AG++ S H +R +AT+ G L G Sbjct: 238 CRSGKRLGARQVQLVVSGALKAAGLDHMGFSTHKLRHTAATLLYQEGNVDLLVLKEMLGH 297 Query: 314 KTVDQAETYTKGADRIRLGIKNSRRIS 340 V E YT +++ ++ Sbjct: 298 ANVGTTEIYTHVSNKKVQEAAAKNPLA 324 >gi|215447156|ref|ZP_03433908.1| site-specific tyrosine recombinase XerC [Mycobacterium tuberculosis T85] gi|289759014|ref|ZP_06518392.1| tyrosine recombinase XerC [Mycobacterium tuberculosis T85] gi|289714578|gb|EFD78590.1| tyrosine recombinase XerC [Mycobacterium tuberculosis T85] Length = 299 Score = 102 bits (254), Expect = 8e-20, Method: Composition-based stats. Identities = 40/268 (14%), Positives = 92/268 (34%), Gaps = 27/268 (10%) Query: 86 SLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRKHTPSSA---IQFLTSM 140 +V++R ++ + D +T +RS + + ++ + +++ Sbjct: 17 GRSVHTRRAYLGDLRSLFAFLADRGSSLDALTLSVLRSWLAATAGAGAARTTLARRTSAV 76 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS--------QP 192 + WAVR+ +A +P ++ PK + ++ + + G+ + Sbjct: 77 KAFTAWAVRRGLLAGDPAARLQVPKARRTLPAVLRQDQALRAMAAAESGAEQGDPLALRD 136 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHL----------QNNIFSIKTQKTGTIITVELPDGFM 242 RL E L +G+R S+ C V + + + +G+ + G + Sbjct: 137 RLIVELLYATGIRVSELCGLDVDDIEHRPSVGSGARQGQQEAHSTCSGSQPPMRCTPGLV 196 Query: 243 KLLAM--TPIGKETFFINNDKQKMNATQFSIWFKA--KATKAGVNKSAHGVRKFSATISA 298 T + ++++ Q A + HG+R +AT Sbjct: 197 DGRRALVTAESGHALLLGARGRRLDVRQARTAVHQTVAAVDGAPDMGPHGLRHSAATHLL 256 Query: 299 DAGATAHELMATYGWKTVDQAETYTKGA 326 + GA + G ++ + YT A Sbjct: 257 EGGADLRVVQELLGHSSLATTQLYTHVA 284 >gi|154150265|ref|YP_001403883.1| phage integrase family protein [Candidatus Methanoregula boonei 6A8] gi|153998817|gb|ABS55240.1| phage integrase family protein [Methanoregula boonei 6A8] Length = 306 Score = 102 bits (254), Expect = 8e-20, Method: Composition-based stats. Identities = 41/291 (14%), Positives = 94/291 (32%), Gaps = 33/291 (11%) Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ------IIRKSGDFDYRKITTKHIRSG 122 + YR + + + S+E + R + + Sbjct: 4 GYFSDWLKSYRNYLRMRNYSSRTLDSYEQVIRHFGYYVWLRRHTEVTKLVFFWKDLENAR 63 Query: 123 VES-------------------RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER 163 +++ R + P + + ++++ +++ Q V NP +ER Sbjct: 64 LDTSVDVPPSMITDFLSFVSTMRTYKPKTFHRIISTLSSFYRFLSVQGAVVANPLAGIER 123 Query: 164 PKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS 223 P+ K + ++ + + + + +L + +G+R S+ C V+ + + + Sbjct: 124 PRIKQQEVKYLKHNQVLRLIDSIEDP-RDKLIVRTIYSTGVRVSELCNMNVEDIDFDEHT 182 Query: 224 IKTQKTGTIITVELPDGFMKLLAMTPIGKE---TFFINNDKQKMNATQFSIWFKAKATKA 280 I+ + G I + D +G FI + ++ FK A A Sbjct: 183 IRIRGKGDKIRIVFVDDETLAGIQKFVGNRIAGPLFIGQQGKHISPRAIQHIFKHYAP-A 241 Query: 281 GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIR 330 G+ + H +R A+ + G ++ E Y D R Sbjct: 242 GI--TPHKIRHSYASELYRRSKNLRVVQENLGHTSIKTTEVYLHTDIDERR 290 >gi|91788824|ref|YP_549776.1| phage integrase [Polaromonas sp. JS666] gi|91698049|gb|ABE44878.1| phage integrase [Polaromonas sp. JS666] Length = 387 Score = 102 bits (254), Expect = 8e-20, Method: Composition-based stats. Identities = 50/280 (17%), Positives = 103/280 (36%), Gaps = 16/280 (5%) Query: 60 YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFE-SYFDQIIRKSGDFDYRKITTKH 118 ++ TT L+++Y + ++ S +++ Y + G ++ + Sbjct: 92 ASARAKRGETTFAELLTDYLSN---TTMKPRSLEAYQWLYKKHVEADLGKRKLSDVSVER 148 Query: 119 IRSGVES-RKHTPSSAIQFLTSMRVLFKWAVRQE-YVAINPCLSVERPKRKTEGIRPWTK 176 IR+ + K TP++A + ++ ++ F WA+++ Y NP V++ +T R Sbjct: 149 IRALHKKISKDTPTTANRCVSMVKAAFNWALKEGTYTGANPAGHVKK-NTETSRTRYLQP 207 Query: 177 EDMQQFKSFWSEGSQP-RLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQ--KTGT 231 ++ F E +P + F L +G R ++ + ++ I+ I K G Sbjct: 208 AELAIFFQALEESEEPAKSFFMLCLLTGARRANVLAMRWADISLEDGIWRIPAGDAKAGE 267 Query: 232 IITVELPDGFMKLLAMTPIG----KETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAH 287 + + L + LL I F + K W + + H Sbjct: 268 EMNIPLVPEAVTLLTRLKIEVADTSPWVFPADSKTGHYQEPKRAWATLRRRSGLADLRIH 327 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 +R+ + GA G K++ A Y + AD Sbjct: 328 DLRRTMGSWLVRTGANTAINAKALGHKSMQAAAVYQRIAD 367 >gi|297624037|ref|YP_003705471.1| integrase family protein [Truepera radiovictrix DSM 17093] gi|297165217|gb|ADI14928.1| integrase family protein [Truepera radiovictrix DSM 17093] Length = 292 Score = 102 bits (254), Expect = 9e-20, Method: Composition-based stats. Identities = 35/251 (13%), Positives = 74/251 (29%), Gaps = 10/251 (3%) Query: 80 KSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139 +S W + SF + + + + + ++S + + + S Sbjct: 20 RSLEWHETS---LKSFTRWLEACSHSAEPETWNPTLIREYVVYLQSSGLSGWTVTNKVQS 76 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFL 199 + +W +E+ N V +PK +P+T ++++ + L Sbjct: 77 LLAFTRWLHEEEFTEKNVAERVRKPKPPQTQRQPFTDAELRRLLKASQSSIRDAAIVALL 136 Query: 200 LYSGLRCSDSCRAGVQH-LQNNIFSIKTQKTGTIITVELPDGFMK-----LLAMTPIGKE 253 L + +R S+ C + L + K V K LL Sbjct: 137 LDTAIRASELCTLKLSDCLLDQCLIKVMGKGNKERVVPHSPQTGKLVSKWLLKGRASEGP 196 Query: 254 TFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYG 312 F ++ + +A V + H +R +A G L G Sbjct: 197 YVFHTERSERFTPRSLHKLIERIGNRAAVDDCYPHRLRHSAAITMLRNGMDPLTLQRMLG 256 Query: 313 WKTVDQAETYT 323 +++ Y Sbjct: 257 HTSLNMTMRYV 267 >gi|240851370|ref|YP_002972773.1| integrase /recombinase xerD [Bartonella grahamii as4aup] gi|240268493|gb|ACS52081.1| integrase /recombinase xerD [Bartonella grahamii as4aup] Length = 312 Score = 102 bits (254), Expect = 9e-20, Method: Composition-based stats. Identities = 44/286 (15%), Positives = 103/286 (36%), Gaps = 33/286 (11%) Query: 72 KWLISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH-----IRSGVES 125 +I + + + + ++ +++ + + + + S + + Sbjct: 4 GAVIDHFLEMMSAERGASPHTLAAYQHDLQWAQDELSSHSVSLFSAQKEDLIALLSLMHT 63 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE------DM 179 SS + L+++R +++ + A +P ++ P++ + +++ D+ Sbjct: 64 FGFAASSQARRLSTLRQFYQFLYAEGLRADDPSHDIDAPRQGRPLPKIMSEDAVIKLLDL 123 Query: 180 QQFK-SFWSEGSQPRLAF-------EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231 Q + + GS+ L E L +GLR S+ VQ ++ +SI + G Sbjct: 124 AQLEVNQADYGSKDYLRALRLQLLSEMLYATGLRISELVSLPVQAVRGKAYSILVRGKGK 183 Query: 232 IITVELPDG-----FMKLLAMTPIGKET-----FFINNDKQKMNATQFSIWFKAKATKAG 281 + L ++ L + GK+ F N++ + + K A +AG Sbjct: 184 KERMVLLSKKAYQVLLQWLNLRDQGKDVASPYLFPANSETGYIARQVVARELKNLARRAG 243 Query: 282 VNK---SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 + S H +R A+ GA + G + + YT Sbjct: 244 IESDSFSPHVLRHAFASHLLQNGADLRAVQHLLGHSDIATTQIYTH 289 >gi|228937164|ref|ZP_04099861.1| Site-specific recombinase [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228822497|gb|EEM68429.1| Site-specific recombinase [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 293 Score = 102 bits (254), Expect = 9e-20, Method: Composition-based stats. Identities = 44/279 (15%), Positives = 101/279 (36%), Gaps = 28/279 (10%) Query: 74 LISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGD----------FDYRKITTKHIRSG 122 +IS++ S + G L + + S + + F ++T + I Sbjct: 1 MISDFISSLSQEGDLHTKTLKEYTSDLKDFVFWFENVWGKHAEDTLFHPIEVTARTIARY 60 Query: 123 VESRKHT----PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK-E 177 E + T PS+ + + S++ F WA ++ V N S++ + + + E Sbjct: 61 REHMQVTRLLKPSTINRRINSIKRYFDWAKQKGLVQTNYSKSIKFVPTEKTSPKRMSDKE 120 Query: 178 DMQQFKSFWSEGS-QPRLAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTI 232 + + G+ + R F+L++GLR + C ++ + + +++ K Sbjct: 121 EAALMYAVEKYGTLRDRAMIIFMLHTGLRSMEVCDVQIEDVIMRKRGGYVVVRSGKRNKQ 180 Query: 233 ITVELPD----GFMKLLAMTPIGKETFFINND-KQKMNATQFSIWFKAKATKAGVNK-SA 286 V L + + ++ I + F ++ +++ + A + SA Sbjct: 181 REVPLNSTARCALEEHIRLSEISQSYLFPSSKTGKRLQERAIRHILQKYIRLAKLEGFSA 240 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 H +R + A+ H L G ++ Y + Sbjct: 241 HDLRHRFGYVMAER-TPLHRLAQIMGHDNLNTTMIYVRA 278 >gi|163782731|ref|ZP_02177727.1| phage integrase family protein [Hydrogenivirga sp. 128-5-R1-1] gi|159881852|gb|EDP75360.1| phage integrase family protein [Hydrogenivirga sp. 128-5-R1-1] Length = 351 Score = 102 bits (254), Expect = 9e-20, Method: Composition-based stats. Identities = 53/344 (15%), Positives = 110/344 (31%), Gaps = 15/344 (4%) Query: 17 RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76 + GK+ Y+ G+R S + ++ S R +++ TT + Sbjct: 10 KRGKVFYFEFMYKGQRYYEKIGVVSKTVAKEIANEIRSRIIRGEYIPQKERKTTFSDAVR 69 Query: 77 EYRKSAHWGSLA-VNSRISFESYFDQIIRKSGDFDYRKITT---KHIRSGVESRKHTPSS 132 Y + S A S+ ++ G +I+T + + P + Sbjct: 70 VYIEWYRKKSTAREKSKEENIRRARRLEEFFGSRKLSQISTFLVESYKKKRLEEGVKPQT 129 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192 L + + + A + E +R ++ + Q+ S E +P Sbjct: 130 INMELNILGSILRRAKEAGLFDGELPKIEKFRNADRERLRFLSEREAQRLISACPEWFKP 189 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKT--QKTGTIITVELPDGFMKLLAMT 248 + F L +GLR + + + + +++ K+G + + + KLL Sbjct: 190 VVIF--ALNTGLRAGEIFSLRWEDVDFERGVITVREASSKSGKVRKLPMNATVKKLLQGL 247 Query: 249 PIG-KETFFINNDKQKMNA--TQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATA 304 F N + FK KAG+ + H +R A+ A Sbjct: 248 ERKEHGYIFTNRFGLPYKYEDKTYRRVFKTACEKAGIKDFRFHDLRHTFASWVAMNSKDI 307 Query: 305 HELMATYGWKTVDQAETYTK-GADRIRLGIKNSRRISSVVDSDD 347 + + G + + Y D +R +++ S S+ Sbjct: 308 YAVQNLLGHSSPSVTKRYAHLTDDYLRSVVESVPNFGSSSASEK 351 >gi|71903698|ref|YP_280501.1| DNA integration/recombination/invertion protein [Streptococcus phage 6180.1] gi|71802793|gb|AAX72146.1| DNA integration/recombination/invertion protein [Streptococcus phage 6180.1] Length = 374 Score = 102 bits (254), Expect = 9e-20, Method: Composition-based stats. Identities = 48/302 (15%), Positives = 93/302 (30%), Gaps = 27/302 (8%) Query: 48 MSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG 107 +A + ++ P+ T L ++ + + I+ K Sbjct: 52 QAARETLISLQAELDKPKSS-MTFGVLTKQWLNEYEKTVQGSTYLKTERNINKHILPKLD 110 Query: 108 DFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167 I I+ E + + L +R + AVR Y+ NP L + PK K Sbjct: 111 KVKIGDINPLLIQRLTEEWCNDLKYGGKILGLVRNILNLAVRYGYINNNPALPITPPKIK 170 Query: 168 TEG---IRPWTKEDMQQFKSFWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222 + +T + ++QF + F L ++G+R + L N Sbjct: 171 RKRKMNNNFYTLDQLKQFLELVEKTDNIEKIALFRLLAFTGIRKGELLALTWDDLNGNTL 230 Query: 223 SIKTQKTGTIITVEL------------------PDGFMKLLAMTPIGKETFFINNDKQKM 264 SI T T + +E+ + +L P F + M Sbjct: 231 SINKAVTRTQVGLEIDVTKTKSSDRLISLDDETLEILQELHETFPTSTLMF-QSESGGIM 289 Query: 265 NATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TY 322 + W + + + HG R A++ ++G + ++ G + Y Sbjct: 290 TPSLPRKWLLQIIKGTDLPQITIHGFRHTHASLLFESGLSLKQVQHRLGHGDLQTTMNVY 349 Query: 323 TK 324 T Sbjct: 350 TH 351 >gi|307354005|ref|YP_003895056.1| integrase family protein [Methanoplanus petrolearius DSM 11571] gi|307157238|gb|ADN36618.1| integrase family protein [Methanoplanus petrolearius DSM 11571] Length = 302 Score = 102 bits (254), Expect = 9e-20, Method: Composition-based stats. Identities = 42/289 (14%), Positives = 97/289 (33%), Gaps = 33/289 (11%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFES------YFDQIIRKSG----------------- 107 + + + + + S+E Y+ I R G Sbjct: 6 FSEWLKRFSHHLRMRNFSPRTIASYEGAVKKFGYYLWIRRNMGQEKLVIYWNDLANARLD 65 Query: 108 -DFDYRKITTKHIRSGVESRKH-TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK 165 + D + + + S + ++ + ++S+ +++ Q V NP +++RPK Sbjct: 66 TEIDTTPMMINDFLAFLTSLRDYKATTLQRIISSLSSFYRYCYTQGVVDSNPLAAIDRPK 125 Query: 166 RKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSI 224 K + +R + + + + RL + +G+R S+ C ++ + + Sbjct: 126 IKEKELRYLKHNQVLSLFNSIN-NERDRLIIRTIYATGVRVSELCSINIEDIDFEDRIIR 184 Query: 225 KTQKTGTIITVELPDGFMKLLAMTPIGK--ETFFINNDKQKMNATQFSIWFKAKATKAGV 282 K G I TV + + ++ + G+ F + ++ F+ A G+ Sbjct: 185 VKGKGGKIRTVFIDEDTLQDINHYTSGRISGPLFEGQQGKNISPRTVQHIFERYAPT-GI 243 Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIR 330 + H +R A+ + G ++ E Y D R Sbjct: 244 --TPHKIRHSYASELYRRSKNLRVVQENLGHSSIQTTEVYLHTDIDERR 290 >gi|58583617|ref|YP_202633.1| site-specific tyrosine recombinase XerC [Xanthomonas oryzae pv. oryzae KACC10331] gi|58428211|gb|AAW77248.1| site-specific recombinase [Xanthomonas oryzae pv. oryzae KACC10331] Length = 347 Score = 102 bits (254), Expect = 9e-20, Method: Composition-based stats. Identities = 39/267 (14%), Positives = 90/267 (33%), Gaps = 27/267 (10%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDF-------------DYRKITTKHIRSGV---ESRKH 128 ++ ++ ++ ++ +G+ D ++ + H+R V R Sbjct: 57 RQVSAHTLDAYRRDLAALVAWTGERNAEDGAQQTATPVDSAQLDSAHLRQFVAAEHRRGL 116 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF--- 185 +P S + L++ R + W ++ +A +P ++ PK + + + ++ + Sbjct: 117 SPKSLQRRLSACRSYYAWLLKHGRIAASPAAALRAPKAQRKLPQVLDADEAVRLVEVPTD 176 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKL 244 G + R E SGLR S+ C + L ++ + K V + + Sbjct: 177 APLGLRDRALLELFYSSGLRLSELCALRWRDLDLDSGLVMVLGKGSKQRLVPVGSHAIAA 236 Query: 245 LAM-----TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATIS 297 L F ++ I K A + G+ + H +R A+ Sbjct: 237 LRQWRRDSGASADAHVFPGRTGGAISQRAVQIRIKQLAVRQGMFKDVHPHMLRHSFASHI 296 Query: 298 ADAGATAHELMATYGWKTVDQAETYTK 324 ++ + G + + YT Sbjct: 297 LESSGDLRGVQELLGHSDIATTQIYTH 323 >gi|218290710|ref|ZP_03494792.1| integrase family protein [Alicyclobacillus acidocaldarius LAA1] gi|218239248|gb|EED06447.1| integrase family protein [Alicyclobacillus acidocaldarius LAA1] Length = 392 Score = 102 bits (254), Expect = 9e-20, Method: Composition-based stats. Identities = 42/299 (14%), Positives = 89/299 (29%), Gaps = 40/299 (13%) Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVE 124 T+ + E+ + + S+ + II + G + K+ HI+ Sbjct: 69 PSKKTVGAYLREWLDDKR-TKVRPGTLRSYVWLVEHHIIPRIGQLELAKLRPSHIQKLYT 127 Query: 125 SRK-----HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179 + + S + + AV+ + N +VE P+ + +R WT E + Sbjct: 128 DLQTGDEHISKRSVLHAHRILHQALDRAVKWGLITRNVTDAVEPPRPARQEMRVWTDEQL 187 Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT---------- 229 F + S+ +AF L +G+R + + + ++ ++ Sbjct: 188 DAFLQAARK-SRYYVAFVLLSSTGMRVGEVLALRWEDVDLQAGLVRVVRSYSYTGKGYRI 246 Query: 230 ------GTIITVELPDGFMKLLAMTPI--------------GKETFFINNDKQKMNATQF 269 ++ LP + LL + + + Sbjct: 247 EEPKTESGRRSIALPPAVVDLLRKHKTEQAARRLMVGSAWEDNDLVICTAFGKPILQHNL 306 Query: 270 SIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGA 326 F + G+ + H +R ATI G + G + TY+ Sbjct: 307 RTSFHRIIERTGLPRIRLHDLRHTHATILLQRGVHPKVVQERLGHSDITLTLNTYSHVV 365 >gi|149924555|ref|ZP_01912912.1| Phage integrase [Plesiocystis pacifica SIR-1] gi|149814565|gb|EDM74148.1| Phage integrase [Plesiocystis pacifica SIR-1] Length = 374 Score = 102 bits (254), Expect = 9e-20, Method: Composition-based stats. Identities = 43/288 (14%), Positives = 86/288 (29%), Gaps = 20/288 (6%) Query: 54 STPKREYINSPRKKPTTLKWLISEYRK-SAHWGSLAVNSRISFESYFD-QIIRKSGDFDY 111 E P+K+ T Y + + S E + I+ GD Sbjct: 59 RRASGEDTAQPKKEVPTFAEFAPRYVEGQVKGNGAKPSHVESIERHLRIHILPAFGDKRL 118 Query: 112 RKITTKHIRSGVESRKHTPSS--AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169 ++ + + T + T++ L K AV + + P ++R + + Sbjct: 119 DELEQEDLERFKAKLGETRKNKTINNIQTTLSTLLKAAVAWKVIEEVPVE-IKRLRVVRK 177 Query: 170 GIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSG---LRCSDSCRAGVQHLQNNI----- 221 + + ++ + + F ++ +L G LR + L Sbjct: 178 KMDFFDFDEFARLREFAAKAPSDATDLAIVLLGGDAGLRAGEIRGLHWNSLDFQRNRLTV 237 Query: 222 ------FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKA 275 I T K I + + K L P ++ + S + Sbjct: 238 EWAEWRGQITTPKHDKIRVLPMTQRLQKALRQLPRDRKLVLAQPSGDPLTVGLLSKRLRR 297 Query: 276 KATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 +AG+ +K H +R + A G A + G ++ E Y Sbjct: 298 VEKRAGLRDKGPHTLRHTFCSHLAMRGIPARVIQQLAGHSSLVTTERY 345 >gi|149200277|ref|ZP_01877298.1| integrase/recombinase [Lentisphaera araneosa HTCC2155] gi|149136641|gb|EDM25073.1| integrase/recombinase [Lentisphaera araneosa HTCC2155] Length = 318 Score = 102 bits (254), Expect = 9e-20, Method: Composition-based stats. Identities = 50/300 (16%), Positives = 107/300 (35%), Gaps = 42/300 (14%) Query: 77 EYRKSAHWGSLAVNSRISFE-SYFDQIIRKSGD-------FDYRKITTKHIRSGVESRKH 128 +Y K+ + +++++ ++ + I + GD +++I + + S + Sbjct: 15 KYLKTE--KNFSLHTQKAYFFDIVEFITQTWGDEAIEAQSLAWKQIDKNAAKGYIFSLQE 72 Query: 129 TPSSAIQFL---TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS- 184 + S L +S+R L+ + R+E + NP ++ K+ ++ED+ S Sbjct: 73 SKISKNTLLRKCSSLRSLYNFFQREELQSTNPFQDIKAAKKDKSLPLILSREDISTLLSS 132 Query: 185 ---FWSE---------GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGT 231 +W++ S+ E + GLR ++ + ++K K Sbjct: 133 PAPYWAQKKGKNNDFMASRDAAILEIIYSGGLRIQEALDINFDQINLEESTLKIFGKGKK 192 Query: 232 IITVELPDGFMKLLAM------------TPIGKETFFINNDKQKMNATQFSIWFKAKATK 279 T L + + L T F D ++++A KA Sbjct: 193 QRTAYLGNPAKQALEQYFACRKNAELNWTSANDPVFINLKDLKRLSARSIQRNLKAYLQS 252 Query: 280 AGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNS 336 + + + H +R AT DAGA + G + + + YT DR+ + Sbjct: 253 CQLPPDITPHKLRHSFATHLLDAGADLRSVQELLGHENLSTTQIYTHISTDRLLQAYDQA 312 >gi|291551222|emb|CBL27484.1| Site-specific recombinase XerD [Ruminococcus torques L2-14] Length = 327 Score = 102 bits (254), Expect = 9e-20, Method: Composition-based stats. Identities = 39/277 (14%), Positives = 91/277 (32%), Gaps = 14/277 (5%) Query: 59 EYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH 118 E + + + + L+ + + + + + + ++ G + I T Sbjct: 37 EVTKIKKDEELSEQNLVESFLSAKRIEGCSEKTLKYYNATIQSMLDGIG-KSIKYIVTDD 95 Query: 119 IR----SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174 IR +K + + + F W ++Y+ +P + + K T + Sbjct: 96 IRCYLTEYQAKKKSSKVTIDNIRRILSSFFSWLEDEDYILKSPVRRIHKVKTGTNIKETY 155 Query: 175 TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT 234 + E ++ + +E + + L +G+R + + + N G Sbjct: 156 SDEALELMRDNCTE-LRDLAMIDMLASTGMRVGEMVLLNREDIDFNERECVVFGKGDKER 214 Query: 235 VELPDG-----FMKLLAMTPIGKETFFIN--NDKQKMNATQFSIWFKAKATKAGVNK-SA 286 + D L F++ + +MN + + + G+NK Sbjct: 215 IVYFDARTKIHLQNYLNSRKDDNPALFVSLQSPHNRMNIGGIEVRLRQLGKRLGLNKVHP 274 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 H R+ AT++ D G +L G + +D Y Sbjct: 275 HKFRRTLATMAIDKGMPIEQLQQLLGHRRIDTTLQYA 311 >gi|163795288|ref|ZP_02189255.1| putative integrase/recombinase protein [alpha proteobacterium BAL199] gi|163795386|ref|ZP_02189353.1| putative integrase/recombinase protein [alpha proteobacterium BAL199] gi|163796178|ref|ZP_02190140.1| putative integrase/recombinase protein [alpha proteobacterium BAL199] gi|159178637|gb|EDP63177.1| putative integrase/recombinase protein [alpha proteobacterium BAL199] gi|159179274|gb|EDP63805.1| putative integrase/recombinase protein [alpha proteobacterium BAL199] gi|159179372|gb|EDP63903.1| putative integrase/recombinase protein [alpha proteobacterium BAL199] Length = 276 Score = 102 bits (254), Expect = 9e-20, Method: Composition-based stats. Identities = 40/272 (14%), Positives = 96/272 (35%), Gaps = 26/272 (9%) Query: 85 GSLAVNSRISF-------ESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFL 137 +L+ ++ S+ YFD+ + G D R + +G+ + ++ Q + Sbjct: 8 RNLSPATQRSYVLAVSKFSRYFDRSPDRLGLEDVRAFQVHLVSTGI-----SWAALNQTV 62 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFE 197 ++R + + + + + + +++ +F + + R A Sbjct: 63 CALRFFYGVTLGHGEIP----ERIPYAREPRNLPVVLSADEVVRFLEAVAS-LKSRAALT 117 Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ--KTGTIITVELPDGFMKLLA---MTPIGK 252 +GLR S+ V + + I+ + K G V L + +L + Sbjct: 118 TAYAAGLRVSEVVALRVGDVDSGRMVIRVEHGKGGKDRYVMLSAQLLGILRTYWRLARPE 177 Query: 253 ETFFINND-KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMA 309 F + + ++ ++ AG++K + H +R AT ++G + Sbjct: 178 HWLFPGREASKPIDVQVLHAACRSARAAAGLDKRVTVHTLRHSFATHLLESGTDIRIIQV 237 Query: 310 TYGWKTVDQAETYTKGAD-RIRLGIKNSRRIS 340 G + YT+ ++ IR R++ Sbjct: 238 LLGHANLSTTARYTQVSNGLIRRTESPLDRLA 269 >gi|309789403|ref|ZP_07683993.1| phage integrase family protein [Shigella dysenteriae 1617] gi|308922797|gb|EFP68314.1| phage integrase family protein [Shigella dysenteriae 1617] Length = 241 Score = 102 bits (254), Expect = 9e-20, Method: Composition-based stats. Identities = 45/224 (20%), Positives = 78/224 (34%), Gaps = 17/224 (7%) Query: 112 RKITTKHIRSGVESRKHT-PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170 I H+R ++ R + A SM +F+W + YV NPC V + K Sbjct: 4 DNIKPAHVRLYMDKRGLKSKTQANHEKASMSRVFRWGYERGYVKGNPCQGVSKFSLKPRD 63 Query: 171 IRPWTKEDMQQFKSFWSEGSQP-RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229 +T E+ + + + E S + A E R D + + + I+ KT Sbjct: 64 YY-FTDEE---YIAIYQEASPVLQCAMETAYLCATRIGDIRKLTWDQVMSKGLFIQQGKT 119 Query: 230 GTIITVELPDGFM-KLLAMTPIGKETF-FINNDKQKMNATQFSIWFKAKATKAG------ 281 G + + L +G + F N + + T F+ ++ A Sbjct: 120 GKKQLKQYSERLTFALEQAKSLGGQHFVVCNKYGGQYSYTGFNDIWRKARAAASEKLGYP 179 Query: 282 VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 + + H + K D ++ E G KT Q TY + Sbjct: 180 ITGTFHDL-KAKGISDYD--GSSKEKQLFSGHKTEAQVLTYDRK 220 >gi|86139826|ref|ZP_01058392.1| Phage integrase [Roseobacter sp. MED193] gi|85823455|gb|EAQ43664.1| Phage integrase [Roseobacter sp. MED193] Length = 419 Score = 102 bits (254), Expect = 9e-20, Method: Composition-based stats. Identities = 43/278 (15%), Positives = 91/278 (32%), Gaps = 17/278 (6%) Query: 64 PRKKPTTLKWLISEYRK--SAHWGS--LAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119 PR P IS RK WG+ + ++ E + +++ G K+ + Sbjct: 114 PRLAPRNASDQISMLRKMVEPEWGNRLVTEITKQDVERFLNKVAE--GRPRPSKLKPNNR 171 Query: 120 RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179 ++ K TP A + +R +F A+ E+ NP + R + E++ Sbjct: 172 ARKLQGWKPTPIRANRVGQLLRKMFNLAISWEWREDNPAAGFRMRIENSRE-RFLSHEEL 230 Query: 180 QQFKSFWSEGSQPRLA--FEFLLYSGLRCSDSCRAGVQHLQNNIFSIK----TQKTGTII 233 + + R A + +G R + A +H + S T K + Sbjct: 231 ARLATALDHAEDQRAAGIIRMCMLTGARVGEVRTARFEHFNLDYGSWAKPADTTKQRKVH 290 Query: 234 TVELPDGFMKLLAMTP---IGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGV 289 + + ++ + D + +++ +A + + H + Sbjct: 291 RIPISADVATIVRQRKLVVPKGSPWLFPGDTPGQPVKEIRRFWRNMQREAEIPDVRIHDL 350 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 R A++ GA+ + G + + Y D Sbjct: 351 RHTFASLLVSGGASLEMVGRLLGHSQMSTTQRYAHFMD 388 >gi|325285449|ref|YP_004261239.1| Tyrosine recombinase xerC [Cellulophaga lytica DSM 7489] gi|324320903|gb|ADY28368.1| Tyrosine recombinase xerC [Cellulophaga lytica DSM 7489] Length = 296 Score = 102 bits (254), Expect = 9e-20, Method: Composition-based stats. Identities = 38/264 (14%), Positives = 93/264 (35%), Gaps = 24/264 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGVE---SRKHTPSSAIQFL 137 + ++ +++ + G + +R+ + S++ + S + + Sbjct: 14 KKYSTHTVTAYKKDISEFTEFCGVNYQLTSIDDVPYAFVRNWIVVLVSKEISNRSINRKI 73 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS-----EGSQP 192 S++ +K+ + V +NP + K + P++ E+++ + EG + Sbjct: 74 ASLKAYYKFLQKIGRVVVNPLAKHKALKISKKIEIPFSFEEVEAALNEVDFEAGFEGERD 133 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPD-------GFMKL 244 RL L +G+R + ++++ +IK K V L +++ Sbjct: 134 RLIIGLLYATGVRRIELVNLKLKNVDVKAKTIKVLGKRNKERVVPLAPFVCPWVYSYLEN 193 Query: 245 LAMTPI--GKETFFINNDKQKMNATQFSIWFKAK--ATKAGVNKSAHGVRKFSATISADA 300 P+ + FF+ K+ + + S H +R AT + Sbjct: 194 REALPVINDEAYFFLLKSGDKVYESLVYRIINRYFSKVSSKQKNSPHILRHTFATHLLNE 253 Query: 301 GATAHELMATYGWKTVDQAETYTK 324 GA + + G ++ + YT Sbjct: 254 GADLNSVKELLGHSSLASTQVYTH 277 >gi|152967083|ref|YP_001362867.1| phage integrase family protein [Kineococcus radiotolerans SRS30216] gi|151361600|gb|ABS04603.1| phage integrase family protein [Kineococcus radiotolerans SRS30216] Length = 344 Score = 102 bits (254), Expect = 9e-20, Method: Composition-based stats. Identities = 43/302 (14%), Positives = 85/302 (28%), Gaps = 39/302 (12%) Query: 61 INSPRKKPTTLKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKS---GDFDYRKITT 116 + L+ + +Y L+ N+ ++ + +R G D ++ Sbjct: 13 PDPAGSGEAALRAAVGDYLAHLQVERGLSPNTLGAYRRDLARYVRFLAARGVHDPAQVDE 72 Query: 117 KHIRSGVESRKHTPSSAIQFLTS--------MRVLFKWAVRQEYVAINPCLSVERPKRKT 168 + V + + A S +R ++ + +P + V P Sbjct: 73 AVVSGFVVALRTGADGAAVLTASSAARTASAVRGWHRFLHAEGRSDQDPAVLVRPPTPPR 132 Query: 169 EGIRPWTKEDMQQFKSFW---------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL-- 217 T E++++ + E L G R S++ V + Sbjct: 133 RLPTALTVEEVRRLLEVAGPGGEGERSPVALRDAALLEVLYGCGARISEAVGLDVDDVTP 192 Query: 218 ---QNNIFSIKTQKTGTIITVELPDGFMKLL-----------AMTPIGKETFFINNDKQK 263 K V L L A G F+N + Sbjct: 193 EVLGEGGLVRLRGKGSRERLVPLGPCARSALERYLARSRPQLAAQGRGTAALFLNTRGDR 252 Query: 264 MNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321 ++ ++ A +AG+ + S H +R AT GA + G +V + Sbjct: 253 LSRQSAWAVLQSAAQRAGIARAVSPHTLRHSFATHLLREGADVRVVQELLGHASVATTQV 312 Query: 322 YT 323 Y Sbjct: 313 YA 314 >gi|320096216|ref|ZP_08027802.1| integrase/recombinase XerD [Actinomyces sp. oral taxon 178 str. F0338] gi|319976842|gb|EFW08599.1| integrase/recombinase XerD [Actinomyces sp. oral taxon 178 str. F0338] Length = 299 Score = 102 bits (254), Expect = 9e-20, Method: Composition-based stats. Identities = 37/279 (13%), Positives = 89/279 (31%), Gaps = 27/279 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDY-----RKITTKHIRSGVE---SRKHTPSSAIQF 136 + ++ ++ + + +G +T + R+ + +R S+ + Sbjct: 17 RGASAHTVRAYTADLAAFLAFTGTDPADPGAASALTLRAARAWLADSVARGAARSTVSRH 76 Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW--------SE 188 + ++R WA R+ + ++ + R +++ Sbjct: 77 VAALRNFSAWAHREGLAPTDAAAALASARADQRLPRVVDQDEAAALLECARSRASADDPV 136 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-----TIITVELPDGF-- 241 + E + +G+R S++C + +++ G V D Sbjct: 137 SVRDWAILELIYATGIRVSEACSLTTSSIDPAALTVRVLGKGDKERTVPFGVPARDALDQ 196 Query: 242 --MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISA 298 ++ +G + F+ ++ +AGV + + HG+R +AT Sbjct: 197 WTVRARPSLAVGTDALFVGAKGGPIDPRVVRAMIHRMCARAGVRDIAPHGLRHSAATHLL 256 Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 GA + G ++ + YT D RL R Sbjct: 257 QGGADLRAVQEILGHSSLATTQRYTH-VDAGRLSDVYRR 294 >gi|269216406|ref|ZP_06160260.1| putative phage integrase [Slackia exigua ATCC 700122] gi|269130665|gb|EEZ61743.1| putative phage integrase [Slackia exigua ATCC 700122] Length = 353 Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats. Identities = 41/285 (14%), Positives = 79/285 (27%), Gaps = 36/285 (12%) Query: 90 NSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFLTSMRVLFKW 146 ++ + + I+R G + + + S + P + + + K+ Sbjct: 32 STVRDYHAVARLIVRYIGTCTVSDMEVMAVSDWMASMVRDGYAPKTCSKAFRLLSQALKF 91 Query: 147 AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR-LAFEFLLYSGLR 205 AV Q + NPC + P++ + + + + P A E L +G+R Sbjct: 92 AVGQGAIDKNPCDFCKPPRQIRSRFIALDRAERSRMLYLARQDDSPLGFAIEIALTTGMR 151 Query: 206 CSDSCRAGVQHLQ--------------NNIFSIKTQKT-GTIITVELPDG---------- 240 + C F IK K+ I T+ L Sbjct: 152 RGEVCALKWSDFSSRGTLTVRRALGNAEGGFYIKEPKSLSGIRTIPLASDTNEALGRLKG 211 Query: 241 --FMKLLAMTPIGKETFFINNDK---QKMNATQFSIWFKAKATKAGVNKSAHGVRKFSAT 295 + + + + + Q N + F G + +R AT Sbjct: 212 AFLEANRSEGSASADGYIVGAGESGDQPYNPDRLGRDFAQFCRDNGFECTFRDLRHTFAT 271 Query: 296 ISADAGATAHELMATYGWKTVDQA-ETYTKGA-DRIRLGIKNSRR 338 AG + + G V Y + + R R Sbjct: 272 FMVGAGVDVRTVASLLGHANVAMTLNIYAEADPEAKRRAAGAIER 316 >gi|189460431|ref|ZP_03009216.1| hypothetical protein BACCOP_01072 [Bacteroides coprocola DSM 17136] gi|189462397|ref|ZP_03011182.1| hypothetical protein BACCOP_03083 [Bacteroides coprocola DSM 17136] gi|189430903|gb|EDU99887.1| hypothetical protein BACCOP_03083 [Bacteroides coprocola DSM 17136] gi|189432863|gb|EDV01848.1| hypothetical protein BACCOP_01072 [Bacteroides coprocola DSM 17136] Length = 368 Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats. Identities = 39/260 (15%), Positives = 83/260 (31%), Gaps = 13/260 (5%) Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTPSSAI 134 Y + ++++ +++ YF + D +T + I S + KH ++ Sbjct: 96 YLELLEQKRYSLSTIKAYKIYFSDFMEYHKGQDLDLLTVEDINSYMLHMVKEKHISATQQ 155 Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194 + + VR+ + R K ++E+M+ + S R Sbjct: 156 NMRINAIKFYYEKVRKGKRQY--YGGIARAKEYKALPEVLSREEMKSIFAQLSNRKH-RC 212 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-----ITVELPDGFMKLLAMTP 249 + +GLR S+ Q + + I+ G ++ +L + Sbjct: 213 MISLIYSAGLRRSELLNLTPQDIISERMLIRIAGKGKKCRYSLLSEKLLNELRAYYREYR 272 Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHEL 307 K F ++ + + K A KAG+ H +R AT + G + Sbjct: 273 PQKWLFEGEQAGEQYSPSALVKILKEAARKAGIKHRVHLHMLRHTFATHLLEQGTDLRTI 332 Query: 308 MATYGWKTVDQAETYTKGAD 327 G + Y ++ Sbjct: 333 QELMGHTDIKTTAIYLHVSN 352 >gi|167561039|ref|ZP_02353955.1| prophage integrase [Burkholderia oklahomensis EO147] Length = 376 Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats. Identities = 43/320 (13%), Positives = 97/320 (30%), Gaps = 23/320 (7%) Query: 18 HGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISE 77 ++ G RIR ++A S R+ R T + Sbjct: 8 KNGPWWFDLSIDGSRIRQSSGTSDRRAAEELAAKVASDYWRQKKLGERPA-VTWDAAVVH 66 Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH--------T 129 + K + S + + + + + R I + I++ +E++ Sbjct: 67 WLK----QNQHQRSLETTKQRLRWLTDQLKGENVRNIDRERIQALIETKAAEKYRGSPVA 122 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 ++ + + ++ V+ + ++ P + + + + + T+ Q+ Sbjct: 123 GATVNRHMAALSVILHHCHAEGWIDAVP--PIRKLRENSARLTWLTRAQAQRLLEELPTH 180 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQKTGTIITVELPDGFMKLL 245 + F +GLR S+ + + K G +I+V L + + +L Sbjct: 181 LRQMTRFALA--TGLRESNVRQLEWAQVDRERALAWIHADQAKAGKVISVPLNEDALGVL 238 Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATA 304 + + + W K +AG+ H +R A+ AG Sbjct: 239 REQQGQHKRYVFVYKGAPIGRIYNHAWQK-ACVRAGLSGLRFHDLRHTWASWHVQAGTPL 297 Query: 305 HELMATYGWKTVDQAETYTK 324 L GW + Y Sbjct: 298 PILQQLGGWASYQMVLRYAH 317 >gi|291300674|ref|YP_003511952.1| integrase family protein [Stackebrandtia nassauensis DSM 44728] gi|290569894|gb|ADD42859.1| integrase family protein [Stackebrandtia nassauensis DSM 44728] Length = 345 Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats. Identities = 49/296 (16%), Positives = 97/296 (32%), Gaps = 44/296 (14%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR--------KSGDFDYRKITTKHIRSG 122 + + +S + ++ ++ + ++G D ++ +R Sbjct: 3 FSVAVELFFQSRAPRKDSPHTTAAYRRDLLAVAEVVAAEVGCETGRVDCGGLSVSVMRRA 62 Query: 123 VESRKHTPS--SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED-- 178 + + S + + F + V + V NP V RPK +P ED Sbjct: 63 FAGFSASRAKSSIGRAWSVWNAFFSFLVGEGIVEGNPMSGVARPKAARPLPKPLRGEDAP 122 Query: 179 ---MQQFKS-----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKT 226 ++ S + LL +GLR S+ + ++ Sbjct: 123 DRLLEALMSGARAGRHPWPQRDVAVVAVLLLTGLRSSELLALRAGDVAGGAGERRLVVRD 182 Query: 227 QKTGTIITVELPDGFMKLLA--------MTPIGK------ETFFINNDKQKMNATQFSIW 272 K G V + LLA P G+ E F+++ + + Q Sbjct: 183 GKGGADRVVPVEGPLEVLLADYLASRRGRFPGGRWPLAPSEPLFVDHRGEALTRNQLQYL 242 Query: 273 FKAKATKAGVN------KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 + AGV+ H +R AT +GA+A E+M G ++++ ++ Y Sbjct: 243 VRQCYRFAGVDDAVQRGALVHALRHTFATRVGASGASAMEVMELLGHRSLNASQGY 298 >gi|189182982|ref|YP_001936767.1| site-specific tyrosine recombinase XerD [Orientia tsutsugamushi str. Ikeda] gi|189179753|dbj|BAG39533.1| integrase/recombinase XerD [Orientia tsutsugamushi str. Ikeda] Length = 309 Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats. Identities = 40/287 (13%), Positives = 98/287 (34%), Gaps = 35/287 (12%) Query: 73 WLISEYRKSA-HWGSLAVNSRISFESYFDQI------IRKSGDFDYRKITTKHIRSGVES 125 + ++ ++ +++ NS ++++ I+ + Sbjct: 2 DFLEQFLETVLAEKNVSANSLLAYKRDLQDFNDFLKSIQLQSSLAVTNNDIDSFIQHLLG 61 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + + S + ++++R + + + + V + ++E P+ T+ + + ++++ + Sbjct: 62 KNLSFRSIARKISTLRQYYLFLLTENAVQADLVTNIEVPRYSTKLPKILSIKEIKVLIDY 121 Query: 186 W-----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ----NNIFS---IKTQKTGTII 233 +EG + L +GLR S+ + L+ + K Sbjct: 122 CFKDTTAEGIRTLAMICLLYSTGLRVSELVSVKITDLKFDHNTGKIKNHFVILGKGNKER 181 Query: 234 TVELPD----------GFMKLLAMTPIGKETFFINNDKQK---MNATQFSIWFKAKATKA 280 V + D + + K + ++ K K M F+I K A A Sbjct: 182 LVIMNDLTGDVISKYLPYRDFFSPFKNAKNSVYLFPSKAKQGYMTRQNFAILLKHAAINA 241 Query: 281 GV---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 G+ N S H +R A+ + GA + G + + YT Sbjct: 242 GLSPDNVSPHILRHSFASHLLEGGADLKVIQELLGHVDISSTQIYTH 288 >gi|163796175|ref|ZP_02190137.1| putative integrase/recombinase protein [alpha proteobacterium BAL199] gi|163797772|ref|ZP_02191719.1| putative integrase/recombinase protein [alpha proteobacterium BAL199] gi|159176992|gb|EDP61556.1| putative integrase/recombinase protein [alpha proteobacterium BAL199] gi|159178634|gb|EDP63174.1| putative integrase/recombinase protein [alpha proteobacterium BAL199] Length = 276 Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats. Identities = 38/267 (14%), Positives = 92/267 (34%), Gaps = 16/267 (5%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRK--ITTKHIRSGVESRKHTPSSAIQFLTSMRV 142 +L+ ++ S+ + R G R + + + S + S Q + ++R Sbjct: 8 RNLSPATQRSYLHAVAKFSRFFGRSPDRLGLEDVRAFQVHLVSTGISWPSLNQTVCALRF 67 Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS 202 + + + + + + + +++ +F + + R A + Sbjct: 68 FYGVTLGHGEIP----ERIPYAREPRKLPVVLSADEVVRFLEAVAS-LKSRAALTTAYAA 122 Query: 203 GLRCSDSCRAGVQHLQNNIFSIKTQ--KTGTIITVELPDGFMKLLA---MTPIGKETFFI 257 GLR S+ V + + I+ + K G V L + +L + F Sbjct: 123 GLRVSEVVALRVGDVDSGRMVIRVEHGKGGKDRYVMLSAQLLGILRTYWRLARPEHWLFP 182 Query: 258 NND-KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWK 314 + + ++ ++ AG++K + H +R AT ++G + G Sbjct: 183 GREASKPIDVQVLHAACRSARAAAGLDKRVTVHTLRHSFATHLLESGTDIRIIQVLLGHA 242 Query: 315 TVDQAETYTKGAD-RIRLGIKNSRRIS 340 + YT+ ++ IR R++ Sbjct: 243 NLSTTARYTQVSNGLIRRTESPLDRLA 269 >gi|304440443|ref|ZP_07400332.1| phage integrase [Peptoniphilus duerdenii ATCC BAA-1640] gi|304371195|gb|EFM24812.1| phage integrase [Peptoniphilus duerdenii ATCC BAA-1640] Length = 387 Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats. Identities = 44/285 (15%), Positives = 96/285 (33%), Gaps = 39/285 (13%) Query: 85 GSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSG----------VESRKHTPSSA 133 L N+ + SY +QI GD + IT + ++ + + P + Sbjct: 80 HKLEENTISWYNSYLKNQINSFFGDKPIKNITERDVKDFNNHLMNYISERTKKPYAPKTI 139 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG-IRPWTKEDMQQFKSFWSEGSQP 192 +T ++ LF AV + + NP +V+ K + + ++ +M++ + + Sbjct: 140 KHNITVLKSLFNVAVEEGILEKNPAENVKNVKVQKSVQDKYYSPSEMKKALKYAFKEDDV 199 Query: 193 R--LAFEFLLYSGLRCSDSCRAGVQHLQ--------NNIFSI--------KTQKTGTIIT 234 L + GLR ++ ++ ++ ++ K K Sbjct: 200 NFILCIVLTVTYGLRPAELRGLKWTKIEWTSKRVMIDDTITVVNYYGYDEKGTKNNEPRV 259 Query: 235 VELPDGFMKLLAMTPIGKETFF--------INNDKQKMNATQFSIWFKAKATKAGVNK-S 285 L +LL + ++ F + + F +K K G+ Sbjct: 260 GILTPMIEELLKLQIKEQKKLFGKKCEFVVHSTTGDHLANKTFRDNWKKFCKKIGLRYLP 319 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 +G+R +AT+ A + + G K + E Y + + Sbjct: 320 PYGLRHTTATLLASQNVSIPNIADVMGHKNLSTTEIYIHAIEEEK 364 >gi|301058440|ref|ZP_07199461.1| site-specific recombinase, phage integrase family [delta proteobacterium NaphS2] gi|300447496|gb|EFK11240.1| site-specific recombinase, phage integrase family [delta proteobacterium NaphS2] Length = 388 Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats. Identities = 47/285 (16%), Positives = 85/285 (29%), Gaps = 18/285 (6%) Query: 57 KREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITT 116 K E + T L EY+ + +++Y + + + Sbjct: 80 KEEAEREADESRWTFDRLWREYKAQKTVYKGKGPDQNRYDNYLKEPFGGKEPKELLPLDV 139 Query: 117 KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS----VERPKRKTEGIR 172 +R + +P + L +R L + ++ C +E P+ I Sbjct: 140 DRVRLKMLKAGKSPQTVKLVLALLRRLANFGAKKRL-----CEGLRFIIEMPQVNNIKIE 194 Query: 173 PWTKEDMQQFKSFWSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQK 228 T E + E P+ + +LY+G+R S+ R + I+ K Sbjct: 195 DLTAEQLDALMRAIDEDDHPQAGNLMKMVLYTGMRRSELFRLKWSDIDGQRSFIKIRDPK 254 Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA-- 286 G + L D LL P + +AG+ K Sbjct: 255 GGVDQNIPLNDAARDLLKEHPSTGSPYVFPGRGGGQRVD-IHHQVNRIRDRAGLPKDFRA 313 Query: 287 -HGVRKFSATISADAGA-TAHELMATYGWKTVDQAETYTKGADRI 329 HG+R A++ A +G + L K+ Y D Sbjct: 314 LHGLRHVYASMLASSGKVDLYTLQRLLTHKSPSMTMRYAHLRDEA 358 >gi|188995443|ref|YP_001929695.1| putative site-specific recombinase [Porphyromonas gingivalis ATCC 33277] gi|188595123|dbj|BAG34098.1| putative site-specific recombinase [Porphyromonas gingivalis ATCC 33277] Length = 401 Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats. Identities = 42/255 (16%), Positives = 86/255 (33%), Gaps = 23/255 (9%) Query: 91 SRISFESYFDQIIRKSGD-FDYRKITTKHIRSGV---ESRKHTPSSAIQFLTSMRVLFKW 146 Y +G+ F+ + R+ + SS + L++++ +K+ Sbjct: 29 YAQDLNRYAAFFSEHTGEVFEPSERDKDVARAWLFSLMEAGQKSSSVQRRLSALKSFYKY 88 Query: 147 AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ-----FKSFWSEGSQPRLAFEFLLY 201 V+ + +P + PK++ ++M++ + E + RL E L Sbjct: 89 MVKIGLIGQSPVRMLRGPKKERPLPVFVPNDEMEKVLNKPIREDDFEAVRDRLILETLYE 148 Query: 202 SGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLL------AMTPIGK-E 253 GLR S+ +++ I+ K V ++ +GK + Sbjct: 149 VGLRRSEIATLKDNAVEDKAGCIRIIGKRNKERIVPFGKRLQDMIDNYRNIREEKVGKSD 208 Query: 254 TFFINNDKQKMNATQFSIWFKAKATKAGVNK----SAHGVRKFSATISADAGATAHELMA 309 FF++ D + + + A V S H +R AT + GA + Sbjct: 209 FFFVSLDGRPLTGEVVYKIVR--TALANVPHLTKRSPHVLRHSFATEMLNHGADLMSVKE 266 Query: 310 TYGWKTVDQAETYTK 324 G ++ YT Sbjct: 267 LLGHDSLSTTVQYTH 281 >gi|30260592|ref|NP_842969.1| prophage LambdaBa04, site-specific recombinase phage integrase family protein protein [Bacillus anthracis str. Ames] gi|47525704|ref|YP_017053.1| prophage lambdaba04, site-specific recombinase phage integrase family protein protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49183443|ref|YP_026695.1| prophage LambdaBa04, site-specific recombinase phage integrase family protein protein [Bacillus anthracis str. Sterne] gi|65317857|ref|ZP_00390816.1| COG0582: Integrase [Bacillus anthracis str. A2012] gi|165870761|ref|ZP_02215414.1| prophage LambdaBa04, site-specific recombinase, phage integrase family [Bacillus anthracis str. A0488] gi|167634745|ref|ZP_02393064.1| prophage LambdaBa04, site-specific recombinase, phage integrase family [Bacillus anthracis str. A0442] gi|167641265|ref|ZP_02399518.1| prophage LambdaBa04, site-specific recombinase, phage integrase family [Bacillus anthracis str. A0193] gi|170688998|ref|ZP_02880199.1| prophage LambdaBa04, site-specific recombinase, phage integrase family [Bacillus anthracis str. A0465] gi|170707193|ref|ZP_02897649.1| prophage LambdaBa04, site-specific recombinase, phage integrase family [Bacillus anthracis str. A0389] gi|177654553|ref|ZP_02936409.1| prophage LambdaBa04, site-specific recombinase, phage integrase family [Bacillus anthracis str. A0174] gi|190567522|ref|ZP_03020435.1| prophage LambdaBa04, site-specific recombinase, phage integrase family [Bacillus anthracis Tsiankovskii-I] gi|227813101|ref|YP_002813110.1| prophage LambdaBa04, site-specific recombinase, phage integrase family [Bacillus anthracis str. CDC 684] gi|229604358|ref|YP_002865039.1| prophage LambdaBa04, site-specific recombinase, phage integrase family [Bacillus anthracis str. A0248] gi|254686817|ref|ZP_05150675.1| prophage LambdaBa04, site-specific recombinase, phage integrase family protein [Bacillus anthracis str. CNEVA-9066] gi|254724891|ref|ZP_05186674.1| prophage LambdaBa04, site-specific recombinase, phage integrase family protein [Bacillus anthracis str. A1055] gi|254738957|ref|ZP_05196659.1| prophage LambdaBa04, site-specific recombinase, phage integrase family protein [Bacillus anthracis str. Western North America USA6153] gi|254744545|ref|ZP_05202224.1| prophage LambdaBa04, site-specific recombinase, phage integrase family protein [Bacillus anthracis str. Kruger B] gi|254756197|ref|ZP_05208226.1| prophage LambdaBa04, site-specific recombinase, phage integrase family protein [Bacillus anthracis str. Vollum] gi|254762016|ref|ZP_05213865.1| prophage LambdaBa04, site-specific recombinase, phage integrase family protein [Bacillus anthracis str. Australia 94] gi|30253960|gb|AAP24455.1| prophage LambdaBa04, site-specific recombinase, phage integrase family [Bacillus anthracis str. Ames] gi|47500852|gb|AAT29528.1| prophage LambdaBa04, site-specific recombinase, phage integrase family [Bacillus anthracis str. 'Ames Ancestor'] gi|49177370|gb|AAT52746.1| prophage LambdaBa04, site-specific recombinase, phage integrase family [Bacillus anthracis str. Sterne] gi|164713595|gb|EDR19119.1| prophage LambdaBa04, site-specific recombinase, phage integrase family [Bacillus anthracis str. A0488] gi|167510773|gb|EDR86166.1| prophage LambdaBa04, site-specific recombinase, phage integrase family [Bacillus anthracis str. A0193] gi|167529819|gb|EDR92567.1| prophage LambdaBa04, site-specific recombinase, phage integrase family [Bacillus anthracis str. A0442] gi|170127971|gb|EDS96842.1| prophage LambdaBa04, site-specific recombinase, phage integrase family [Bacillus anthracis str. A0389] gi|170667099|gb|EDT17861.1| prophage LambdaBa04, site-specific recombinase, phage integrase family [Bacillus anthracis str. A0465] gi|172080665|gb|EDT65748.1| prophage LambdaBa04, site-specific recombinase, phage integrase family [Bacillus anthracis str. A0174] gi|190561309|gb|EDV15281.1| prophage LambdaBa04, site-specific recombinase, phage integrase family [Bacillus anthracis Tsiankovskii-I] gi|227003859|gb|ACP13602.1| prophage LambdaBa04, site-specific recombinase, phage integrase family [Bacillus anthracis str. CDC 684] gi|229268766|gb|ACQ50403.1| prophage LambdaBa04, site-specific recombinase, phage integrase family [Bacillus anthracis str. A0248] Length = 374 Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats. Identities = 47/292 (16%), Positives = 94/292 (32%), Gaps = 37/292 (12%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH 128 TL + E+ ++ + + +++ + +II G + + H + V+S Sbjct: 64 TLSEYLQEWLENTAKQRVRETTFTNYKRAINSRIIPVLGSHKLKDLKPLHGQRFVKSLID 123 Query: 129 ---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 +P+ ++ + AVR E + NP VE P+ + W+ E+ ++F + Sbjct: 124 EGLSPAYIEYIFIVLKGSLEDAVRWELLFKNPFQHVEIPRPRKVVNSTWSIEETKKFLNR 183 Query: 186 WSEGSQPRLA-FEFLLYSGLRCSDSCRAGVQHLQ---------------NNIFSIKTQKT 229 + F L +G+R + ++ N F KT Sbjct: 184 TKFENVIYYHLFLLALNTGMRRGEILGLKWKNFDLNEGKISVTETLIYDENGFRFTEPKT 243 Query: 230 -GTIITVELPDGFMKLLAMTPI--------------GKETFFINNDKQKMNATQFSIWFK 274 G+ + + K + F Q + + F Sbjct: 244 HGSKRLISIDQNLCKEFKSYKAKQNEFKLLFGQSYEDNDLVFAKETGQPILPRTMTTTFN 303 Query: 275 AKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324 KA V + H +R ATI G + G ++ +TY+ Sbjct: 304 QFIKKADVPQIRFHDLRHTHATILLKLGINPKIVSERLGHSSIKTTLDTYSH 355 >gi|302134313|ref|ZP_07260303.1| putative bacteriophage integrase [Pseudomonas syringae pv. tomato NCPPB 1108] Length = 363 Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats. Identities = 56/332 (16%), Positives = 104/332 (31%), Gaps = 35/332 (10%) Query: 17 RHGKIIY-YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK----KPTTL 71 + GK + F G IR S Y +A R ++ P Sbjct: 4 KRGKTWWISFTAADGTYIR-----RSAGTEDYAAAKAIEQEHRGAAWRQKELGVDPPRMF 58 Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG---VESRKH 128 + ++ EY A + + + ++ G + K IR Sbjct: 59 EEVMIEYLDHARQTQRSFAT-TQYR--VKALLEHFGGRVMNDLAGKDIRKYSSLRMKAGK 115 Query: 129 TPSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF--KSF 185 + ++ + L ++ W AV E+ NP + +R T+ +++ ++ Sbjct: 116 SAATVNRELAALSAAINWCAVELEWKLPNPVKG-RTLREAESRVRWLTRAEVESLCREAR 174 Query: 186 WSEGSQPRLAFE-FLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQ--KTGTIITVELPDG 240 G AF + +G R ++ + + N + ++ K G ++ L +G Sbjct: 175 RQRGGDMLEAFIRLAVNTGCRKNELVGLEWRRVDIANRLIYLEGANTKAGKRRSIPLNEG 234 Query: 241 FMKLLAMT-------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKF 292 M L FI + K+ F +AG+ + H +R Sbjct: 235 AMAALKGRMEFRAEHNPASPWVFIRKNGDKVLDLSEG--FNGACDRAGIKDFVIHDLRHT 292 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTK 324 A A AG E+ G T E Y Sbjct: 293 CAAWLATAGVPLIEIRDLLGHSTTQMTEKYAH 324 >gi|299538024|ref|ZP_07051310.1| integrase-recombinase protein [Lysinibacillus fusiformis ZC1] gi|298726606|gb|EFI67195.1| integrase-recombinase protein [Lysinibacillus fusiformis ZC1] Length = 298 Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats. Identities = 46/264 (17%), Positives = 95/264 (35%), Gaps = 12/264 (4%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHT 129 + +++EY S + A + + S+ ++ + + +T++ + V Sbjct: 21 RKILNEYLLSLKLANKAEATISKYRSFLERFCSEC-LVELDSLTSEDVLKWVNKFSVGKK 79 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK-SFWSE 188 S+ I L+ + FK+ + ++Y+ PK R T+++ + K + Sbjct: 80 ESTVINVLSILSSFFKFCLAEDYMDSIVMRKRWVPKLPQPLPRFLTEQEYARVKMASEQL 139 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT-----VELPDGFMK 243 + R FL SG R S+ +Q++ + + + G I VE Sbjct: 140 SLRDRAIVLFLFTSGCRRSEVANLLIQNVDVKQRTAEVRGKGKKIRKVHFSVECALVLKD 199 Query: 244 LL-AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADA 300 L + + E F+N +K+ + AG+ +S H R AT Sbjct: 200 YLWTRSGVATEPLFLNKYGEKLQQSGIYEITTKLGRLAGLEQSLHPHCCRHTFATNMLAK 259 Query: 301 GATAHELMATYGWKTVDQAETYTK 324 GA + G ++ Y + Sbjct: 260 GAELEFIADEMGHTNLNTTRVYAR 283 >gi|288941805|ref|YP_003444045.1| tyrosine recombinase XerC [Allochromatium vinosum DSM 180] gi|288897177|gb|ADC63013.1| tyrosine recombinase XerC [Allochromatium vinosum DSM 180] Length = 320 Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats. Identities = 36/274 (13%), Positives = 88/274 (32%), Gaps = 24/274 (8%) Query: 75 ISEYRKS-AHWGSLAVNSRISFESYFDQII------RKSGDFDYRKITTKHIR---SGVE 124 I + AH L+ ++ ++ +QI + G + IR + Sbjct: 19 IERFLAHLAHERQLSEHTVRAYRHDLNQIAVWLADQGEPGAEPIASLDEAGIRRYTAWRH 78 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 + + + + L+S+R ++W +R+ NP + + PK + + + + Sbjct: 79 RQGVSGKTLQRELSSLRGFYRWLLRENQAVANPAVGLRAPKSPRKLPHTFDADQLGALLD 138 Query: 185 FWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT---IITV--- 235 E + E SGLR ++ + + + + G+ + V Sbjct: 139 PVDEDPLMIRDTAMVELFYSSGLRLAELVSIDLGDIDMSEGELGVIGKGSKSRRVPVGRK 198 Query: 236 ---ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK--AGVNKSAHGVR 290 + A+ + F++ +++ A + A + H +R Sbjct: 199 AREAIERWLAVRSALADRDERALFVSLRGGRIHPRTVEKRLARWAVERGASRHLHPHLLR 258 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK 324 A+ ++ + G + + YT Sbjct: 259 HSFASHLLESSGDLRAVQELLGHTDIGTTQIYTH 292 >gi|160874309|ref|YP_001553625.1| integrase family protein [Shewanella baltica OS195] gi|217972349|ref|YP_002357100.1| integrase family protein [Shewanella baltica OS223] gi|160859831|gb|ABX48365.1| integrase family protein [Shewanella baltica OS195] gi|217497484|gb|ACK45677.1| integrase family protein [Shewanella baltica OS223] gi|315266542|gb|ADT93395.1| integrase family protein [Shewanella baltica OS678] Length = 287 Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 41/267 (15%), Positives = 87/267 (32%), Gaps = 21/267 (7%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE----SRK 127 L+ ++ + +R ++ Q+ + + IT + + + R Sbjct: 2 SSLLQQFHDEIRLRGYSARTRSAYLRAITQL-QHYANQPLDSITDEQLTAYFRYLNLERH 60 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 H+ ++ L + ++ + +++ + + PKR + + + +D+ Sbjct: 61 HSRATLKLQLNGIHFFYEHVLGRDF-----TVQLSLPKRPHKLPQLLSCQDIAALL-CHC 114 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLL 245 + + R GLR S+ V + +K K V + + LL Sbjct: 115 QNLKQRAMLALCYGCGLRVSELTHIKVADIDGQRQLLKVCQGKGAYDRLVIISPTLLTLL 174 Query: 246 A---MTPIGKETFFINNDK---QKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATIS 297 E F + ++ + F A A + S H +R AT Sbjct: 175 RQYWRAYHPVEWLFASTYHDVVYPLHESTFRKALAKAARLASITKPCSPHSLRHAYATHQ 234 Query: 298 ADAGATAHELMATYGWKTVDQAETYTK 324 AG H+L A G ++ E Y Sbjct: 235 LQAGMPLHQLQAQLGHHSIKSTERYLH 261 >gi|91786958|ref|YP_547910.1| phage integrase [Polaromonas sp. JS666] gi|91696183|gb|ABE43012.1| phage integrase [Polaromonas sp. JS666] Length = 358 Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 44/313 (14%), Positives = 92/313 (29%), Gaps = 45/313 (14%) Query: 51 LTGSTPKREYINSPRKKPTTLKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKS--G 107 + P+ + P P L+ Y + LA + + ++ + Sbjct: 7 IASGVPEDRPASVPESHP-----LVERYLEHVRVEKRLASRTVELYALDLHKLEANARQA 61 Query: 108 DFDYRKITTKHIRSGVESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP 164 ++ + H+R V + L+ R + W R+ V NP V P Sbjct: 62 GVALTEVHSTHMRRWVAQMHGAGRSGRGIALILSGWRGFYAWLGREGLVPANPVQDVRSP 121 Query: 165 KRKTEGIRPWTKEDMQQFKSFWS-------EGSQPRLAFEFLLYSGLRCSDSCRA----- 212 K + + ++ Q S+ S ++ + E L GLR + Sbjct: 122 KVAKPLPKALSVDEAVQLASYQSDDEDDPHLEARDQCITELLYGCGLRIGELVGLDVRAS 181 Query: 213 ----GVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM---------------TPIGKE 253 G + + K +V + ++ L + Sbjct: 182 AQARGWVDMDAAEAHV-LGKGSKRRSVPVGRQALQALHAWLALRGDWAGEGAAAEGAAGQ 240 Query: 254 TFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATY 311 FI+ ++ + K ++ KAG+ H +R A+ + + Sbjct: 241 ALFISQRGARLTPQHIRLRLKRRSLKAGLATPVHPHMLRHSFASHVLQSSGDLRAVQELL 300 Query: 312 GWKTVDQAETYTK 324 G + + YT+ Sbjct: 301 GHANITTTQVYTR 313 >gi|83313349|ref|YP_423613.1| site-specific tyrosine recombinase XerC [Magnetospirillum magneticum AMB-1] gi|82948190|dbj|BAE53054.1| Integrase [Magnetospirillum magneticum AMB-1] Length = 314 Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 54/282 (19%), Positives = 95/282 (33%), Gaps = 23/282 (8%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESR--- 126 +WL SE R S+H +F ++ + + + + R+ + R Sbjct: 22 WQWLGSERRASSHTLDGYGRDLAAFLTFLTEHLAAEPDLAALASLGAGDFRAFLARRTQD 81 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPC-LSVERPKRKTEGIRPW-TKEDMQQFKS 184 SS + ++++R FK+ R + V NP +V+ P+ +P E ++ S Sbjct: 82 GLGRSSLARLMSTLRGFFKFLDRHDLV-HNPALKAVKSPRPPKSVPKPLAPDEALEALSS 140 Query: 185 FWSEGSQPRLA------FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238 +P LA F L +GLR ++ + L + T K V + Sbjct: 141 AGELHDEPWLAARDVALFTLLYGAGLRLGEALSLTRRDLPKGDTMVITGKGNKQRVVPVL 200 Query: 239 ----DGFMKLLAMTPIGKET---FFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGV 289 D L P E F+ +N + G+ + H + Sbjct: 201 PVVRDAIADYLKRLPYPAEPTDPIFLGARGGPLNPGVVQRQMRRLRQMMGLPETATPHAL 260 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 R AT G + G ++ + YT D RL Sbjct: 261 RHSFATHLLAGGGDLRTIQELLGHSSLSTTQRYT-EVDAARL 301 >gi|227892233|ref|ZP_04010038.1| phage integrase/recombinase [Lactobacillus salivarius ATCC 11741] gi|227865955|gb|EEJ73376.1| phage integrase/recombinase [Lactobacillus salivarius ATCC 11741] Length = 322 Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 32/262 (12%), Positives = 86/262 (32%), Gaps = 14/262 (5%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS- 132 + ++ + + + + D + + + +++TT+ +R + + +S Sbjct: 47 YLQDFLAAKRVEGCSDRTEKYYRMTLDTFMNEI-QKNIQQVTTEDLRKYLTDYQKKRNSS 105 Query: 133 ---AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 F W ++ + +P + + K ++ E++++ + +E Sbjct: 106 KVTIDNIRRIFSSFFSWLEDEDIIIKSPVRRIHKVKTPNNIKETYSDEELEKLRDNCTE- 164 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG-----FMKL 244 + + L +G+R + R + G + D Sbjct: 165 IRDLALIDLLASTGMRVGELVRLNRDDIDFEERECVVLGKGNKERIVYFDARSKLHLKNY 224 Query: 245 LAMTPIGKETFFIN--NDKQKMNATQFSIWFKAKATKAGVNKS-AHGVRKFSATISADAG 301 L F++ +++M+ + + G+ K+ H R+ AT + D G Sbjct: 225 LLSRSDDNNALFVSLKKPQKRMSIGGIENRIRQLGREIGITKAHPHKFRRTLATNAIDKG 284 Query: 302 ATAHELMATYGWKTVDQAETYT 323 +L G + +D Y Sbjct: 285 MPIEQLQKLLGHERIDTTLHYA 306 >gi|293602487|ref|ZP_06684933.1| phage integrase family site-specific recombinase [Achromobacter piechaudii ATCC 43553] gi|292819249|gb|EFF78284.1| phage integrase family site-specific recombinase [Achromobacter piechaudii ATCC 43553] Length = 335 Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 44/280 (15%), Positives = 85/280 (30%), Gaps = 41/280 (14%) Query: 85 GSLAVNSRISFES--YFDQIIRKSGDFDYRKITTKHIR---SGVESRKHTPSSAIQFLTS 139 + ++ + +F + KI HIR + + ++ P S + L + Sbjct: 36 RRYSPHTLDGYRRELHFLHELADRAKLPLDKIANGHIRQFIARLHAQGRGPRSLARTLAA 95 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK-------SFWSEGSQP 192 R ++W +A NP V PK + + E Q + + Sbjct: 96 WRGFYQWWAPAVDLAGNPVAGVRAPKAPRGLPKALSVEQTQALLDRPAAKVANEPVALRD 155 Query: 193 RLAFEFLLYSGLRCSDSCRA-------------GVQHLQNNIFSIKTQKTGTIITVELPD 239 + FE L SGLR S+ G L + K G +V + Sbjct: 156 QAMFELLYSSGLRLSELVGLDLRYTRTADYESAGWLKLDEAEVEV-LGKGGKRRSVPVGQ 214 Query: 240 GFMKLL-------------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NK 284 + L + P F+ ++++ + A AG+ + Sbjct: 215 AALAALSKWIAARPQLAPPSPAPQDAAALFLGARGKRISPRVVQLQLAQFAQAAGLPTHV 274 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R A+ + + G + + YT+ Sbjct: 275 HPHVLRHSFASHVLQSAQDLRAVQEMLGHANISTTQIYTR 314 >gi|167571459|ref|ZP_02364333.1| phage-related integrase [Burkholderia oklahomensis C6786] Length = 342 Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 55/337 (16%), Positives = 106/337 (31%), Gaps = 34/337 (10%) Query: 9 PFVTKERTRHGKIIYYFRKG--HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66 P G YY+ G GRR P + + L G + S Sbjct: 12 PRFRSRTNADGTKRYYYDHGAIEGRRFLEPLGTDRVVALQRWAELEGKR-----VPSAET 66 Query: 67 KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126 T L YR+ ++ +R ++ + ++ GD + +T + S + Sbjct: 67 TRHTFAMLDRAYRQ-RELPHKSLATRRMYDLFLTRLAAVIGDRELDTLTPADVASIWRAT 125 Query: 127 KHTPS--SAIQFLTSMRVLFKWAVRQEYVA-INPCLSVERPKRKTEGIRPWTKEDMQQFK 183 +A + + ++ + + NPC V R K++T +++ + Sbjct: 126 AEKRGVVTANRTKAVLSLVLNCGRLWDMMTIANPCAGV-RGKKETGRQDILIDDEL--YA 182 Query: 184 SFWSEGSQP-RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242 S ++ +P R A + R +D ++ +T+KT +T+++ Sbjct: 183 SVYAVADEPLRNAMDLADLCAQRPADILGVQRSNIVKGNLIFRTRKTRAFVTIQITGELA 242 Query: 243 KLLAMTPI-------GKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSAT 295 KL+ + + + Q F KAG+NK+ KF Sbjct: 243 KLIERLLAWRGSKVDVSPYLLRDEEGYPLTKGQLRSRFDKAREKAGINKA-----KFQFR 297 Query: 296 ISADAGATAHEL-------MATYGWKTVDQAETYTKG 325 G T + G Y +G Sbjct: 298 DLRARGVTHKTIDEGLEAGQRLAGHSGPGMTARYVRG 334 >gi|313139852|ref|ZP_07802045.1| site-specific tyrosine recombinase XerC [Bifidobacterium bifidum NCIMB 41171] gi|313132362|gb|EFR49979.1| site-specific tyrosine recombinase XerC [Bifidobacterium bifidum NCIMB 41171] Length = 351 Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 51/300 (17%), Positives = 100/300 (33%), Gaps = 60/300 (20%) Query: 85 GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGV--ESRKHTPSSAIQFLTS 139 L+ N+ ++ + + + G D R++TT +R + E+R H SS + + S Sbjct: 35 RGLSGNTVKAYGTDVRECLHALASRGIADLRQVTTDDLRGWMAFETRDHARSSMARKVVS 94 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ------------------ 181 +R F WA + +P + PK T+ ++ Sbjct: 95 VRSFFAWAHEHGRIEADPAAVLMTPKLPDTLPSVLTEAQAERLMDRVDDDASLHAASSQR 154 Query: 182 FKSFWSE--------------------GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI 221 +++ E + E L +G+R ++ + + + Sbjct: 155 YETRHDEMPRLDSAHRGEGMSQRDEVVALRDAAMLELLYATGIRVAELVGLDIGDVDWSH 214 Query: 222 FSIK-TQKTGTIITVELPDGFMKLLA---------------MTPIGKETFFINNDKQKMN 265 +I+ T K V D K LA + F+ ++++ Sbjct: 215 RTIRVTGKGSKQRVVPFGDPAEKALAGWKEHGRPLILRRAGAGTLDTAALFLGMRGRRID 274 Query: 266 ATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 A ++GV + S H +R +AT D GA E+ G ++ + YT Sbjct: 275 QRIVRDVVHRAARESGVPDISPHSLRHSAATHMLDGGADLREVQEMLGHSSLRTTQRYTH 334 >gi|225181363|ref|ZP_03734807.1| integrase family protein [Dethiobacter alkaliphilus AHT 1] gi|225167944|gb|EEG76751.1| integrase family protein [Dethiobacter alkaliphilus AHT 1] Length = 299 Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 38/267 (14%), Positives = 89/267 (33%), Gaps = 27/267 (10%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDF------DYRKITTKHIRSGVESRKHTPSSAIQFLT 138 + + ++ ++ Q + D + +H + +++ + + + L Sbjct: 16 KNASPHTIRNYAEDLGQFFQFLEKEGASFPQDLDYLAIRHFLALMQAHGYERRTIARKLA 75 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRL 194 ++R + R+ Y+A ++ P+ + + +++ + + G + Sbjct: 76 AIRSFLRHLNREGYLADTSWTTISTPRIGKKLPKFLYVDEVFRLLAAPDSQTPAGLRDVA 135 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-------------TIITVELPDGF 241 EFL SG+R S+ +Q L N G + L G Sbjct: 136 ILEFLYSSGVRVSELVALELQSLDLNRGQAIVMGKGGCERLVHLGRFARRSLLAYLEQGR 195 Query: 242 MKLLAMTPIGKE--TFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS 297 ++L G ++N +++ + + + K S H +R AT Sbjct: 196 PEILRKNADGDREGALWLNKYGTRLSDRGVRRIVEKYVRQVSLAKGISPHSIRHSFATHL 255 Query: 298 ADAGATAHELMATYGWKTVDQAETYTK 324 +AGA + G + + YT Sbjct: 256 LNAGADLRVVQELLGHVNISTTQIYTH 282 >gi|209883739|ref|YP_002287596.1| tyrosine recombinase XerC [Oligotropha carboxidovorans OM5] gi|209871935|gb|ACI91731.1| tyrosine recombinase XerC [Oligotropha carboxidovorans OM5] Length = 355 Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 45/319 (14%), Positives = 104/319 (32%), Gaps = 36/319 (11%) Query: 50 ALTGSTPKREYINSPRKKPTT--LKWLISEYRKS-AHWGSLAVNSRISFESYFDQ----I 102 A S P+ + P T + ++ + L+ + ++E Q + Sbjct: 29 AKRTSKPQAQPDPGSIALPATGDFQAEVARWLAHLKSERRLSPKTLEAYERDLRQCIGFL 88 Query: 103 IRKSGD----FDYRKITTKHIRSGVESRKHT---PSSAIQFLTSMRVLFKWAVRQEYVAI 155 G + I +R+ + SR+ S ++ L +R ++ R+ + Sbjct: 89 AEHWGKPVSLASFAGIEATDVRAFMASRRSHDVAGRSLMRALAGLRSFGRFLEREGKGKV 148 Query: 156 NPCLSVERPKRKTEGIRPW--------TKEDMQQFKSFWS-EGSQPRLAFEFLLYSGLRC 206 ++ PK +P T+ +++ + ++ L SGLR Sbjct: 149 GALSAIRAPKISKSLPKPLAVSAARHLTEAEIRAGEDRPPWIWARDAAVMALLYGSGLRI 208 Query: 207 SDSCRAGVQHL----QNNIFSIKTQKTGTIITV---ELPDGFMKLLAMTP---IGKETFF 256 S++ + + + ++ ++ + T + + D +A P + F Sbjct: 209 SEALGLARRDIPEPGRGDVITVTGKGNKTRMVPVLQAVLDAVQDYIAQCPYELSPDKPVF 268 Query: 257 INNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWK 314 + ++ + + G+ + H +R AT G + G Sbjct: 269 VGARGGPLSPRIIQLTMERLRGALGLPDSATPHALRHSFATHLLSRGGDLRAIQELLGHA 328 Query: 315 TVDQAETYTKGADRIRLGI 333 ++ + YT G D RL Sbjct: 329 SLSTTQIYT-GIDAERLMD 346 >gi|116492336|ref|YP_804071.1| integrase [Pediococcus pentosaceus ATCC 25745] gi|116102486|gb|ABJ67629.1| Integrase [Pediococcus pentosaceus ATCC 25745] Length = 384 Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 66/381 (17%), Positives = 130/381 (34%), Gaps = 51/381 (13%) Query: 13 KERTRHGKIIYYFRKGHG-----RRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKK 67 K T+ GKI Y F+ G R + L+ + E + Sbjct: 6 KYTTKTGKIRYEFQVYAGVDSLTGRQKTTRRRGFKTRKEASIVLSRLELEIEKRGLQEDE 65 Query: 68 PTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR 126 + + +E+ + ++ ++ + + ++ GD IT + V Sbjct: 66 RRFFRDVCAEWMEQYR-LTVRESTLEKTQRIINIHVLPAFGDMVINNITPNVCQKVVNKW 124 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP----WTKEDMQQF 182 S ++L ++F +A+R EYV NPC V P+ + + WT++++ F Sbjct: 125 FLEAKSYKKWLNYASMIFDYALRAEYVGRNPCTLVTMPRVQEQAGEKLENFWTRDELNTF 184 Query: 183 KSFWSEGS--QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT----------- 229 + + + F L YSG+R + + + +++ KT Sbjct: 185 FDYVTPERDVEQFTMFRVLAYSGIRKGELLALTWKDINFEDNTLRVNKTLTQGLGGKLIV 244 Query: 230 ------GTIITVELPDGFMKLLAMTP-IGKETF--------------FINNDKQKMNATQ 268 T++L D M+ L + +ETF F +N + Sbjct: 245 QPPKSRAGRRTIDLDDSTMRYLRQWKGVQRETFLGMGFNTNNVDQLVFASNRNHFRSMNT 304 Query: 269 FSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA---ETYTK 324 + W G+ S HG R A++ +G E G D + + YT Sbjct: 305 PTKWLNKAIKATGLKHISIHGFRHTHASLLYQSGVGLKETQQRLGHSRADSSVTLDVYTH 364 Query: 325 GADRIRLGIKNSRRISSVVDS 345 ++ + +R + V++ Sbjct: 365 TTEQQNVA--ALQRFENYVEA 383 >gi|313157227|gb|EFR56657.1| site-specific recombinase, phage integrase family [Alistipes sp. HGB5] Length = 402 Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 43/210 (20%), Positives = 79/210 (37%), Gaps = 19/210 (9%) Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVER--PKRKTEGIRPW-TKEDMQQFKSF---WSE 188 + ++ AVR++ + NP +E+ RK E +R + T E++Q E Sbjct: 186 NYYRALNGALNSAVRKKKMKANPFNELEKSEKIRKPESMRSYMTIEEVQALIDTPMPHEE 245 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT----QKTGTIITVELPDGFMKL 244 + A+ F + GLR SD + + + + +KT I + L +K Sbjct: 246 YEIVKCAYLFSCFCGLRISDIIKLKWNDVFVDRGQYRLAVSMKKTKEPIYLPLSPEALKW 305 Query: 245 L--AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADA 300 + ++ F +A + K A AG++K H R AT+ Sbjct: 306 MPERGGKSSEDNVFDL-----PSANTIRMQLKPWAKAAGISKRFSYHTSRHTFATMMLTL 360 Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIR 330 GA + + G V + Y K ++ + Sbjct: 361 GADLYTVSKLLGHADVKMTQVYAKIINKKK 390 >gi|309801163|ref|ZP_07695292.1| site-specific recombinase, phage integrase family [Bifidobacterium dentium JCVIHMP022] gi|308222052|gb|EFO78335.1| site-specific recombinase, phage integrase family [Bifidobacterium dentium JCVIHMP022] Length = 332 Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 44/330 (13%), Positives = 100/330 (30%), Gaps = 49/330 (14%) Query: 59 EYINSPRKKPTTLKWLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDFDYRKITTK 117 E R+ TL Y + +A + E F + G ++T + Sbjct: 2 EGGTVQRRTSYTLAEYCDRYLEMRRAKKEVAETTIGKQEWQFKAVCHHIGHVKLEEVTPR 61 Query: 118 HIRSGVES---------RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168 + + RK S Q ++ ++F+ A+++ + NPC + PK T Sbjct: 62 MLNDVYVAMMQGDTLSGRKSGGSYVNQIHDNITLVFQHAIKEGILVSNPCDKADPPKMDT 121 Query: 169 EGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ---------- 218 + + + +++ + A+ + GLR + C + Sbjct: 122 KPKKAIHPDKVRELVAELDPTDPHECAYLLAVTLGLRRGEICGLSWNDIDFERNIVDISH 181 Query: 219 --NNIFSIKTQK-TGTIITVELPD----GFMKLLAMTP-------------------IGK 252 +N+ ++K K + + L +K+ Sbjct: 182 SYDNLGNLKGTKIKAGMRLLPLSPVTKDALLKMKEAQAAQFAKTNSFRKPEEGYLEQTED 241 Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATY 311 + +++ + S W+ + G+ + H +R T+ A G + Sbjct: 242 GPVIAGHYGERVQSGTMSRWWSVDRKEFGLEGYTLHELRHTYLTMLAMGGVHPKVMQELA 301 Query: 312 GW-KTVDQAETYTK-GADRIRLGIKNSRRI 339 + + YT D R + ++ Sbjct: 302 SHYSSQITMDIYTHVNMDAKRAAVDAVSKL 331 >gi|254295225|ref|YP_003061248.1| integrase family protein [Hirschia baltica ATCC 49814] gi|254043756|gb|ACT60551.1| integrase family protein [Hirschia baltica ATCC 49814] Length = 402 Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 60/351 (17%), Positives = 123/351 (35%), Gaps = 47/351 (13%) Query: 19 GKIIYYFRKGHGRRIR---------LPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69 GK++++ R+ L P + A A ++ I+ PRKK Sbjct: 38 GKVVFFVRQSRFTETGTTLDITIGALGQPWTPS--NARSQATLLLLQLKQGID-PRKKTN 94 Query: 70 TLKWLISEYRK---SAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVES 125 + + I+ Y + G + ES F I G +++ T HI + + Sbjct: 95 EINYTIASYFEVFCGQTNGRKKPRTIKLEESLFKRHISPHLGKVKLKELNTTHISNFMSK 154 Query: 126 ---------RKHTPS----------SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166 K P +A + + + AV+ + NP +V + + Sbjct: 155 VANPDKIIVEKTKPRGKAVVSGGKPTANRAHDILSAMLNHAVKAGLLDKNPAKNVAKFRT 214 Query: 167 KTEGIRPWTKEDMQQF----KSFWSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQ-- 218 + + R T+ ++Q+ + S+G+ A + L+++G R S+ +++ Sbjct: 215 EKKE-RFLTEVEIQRLGQELRQAGSDGTNTYAIEALKVLMFTGARKSEILSLRWEYIDWQ 273 Query: 219 NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET--FFINNDKQKMNATQFSIWFKAK 276 ++ ++ K ++ LP + +L P F +ND IW + + Sbjct: 274 RSLANLPDSKNDMK-SIVLPSVVISILNNLPNKGTNGWVFPSNDGNTHFTGLQKIWNRIR 332 Query: 277 ATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 + H +R A++ A G + + L + Y AD Sbjct: 333 TNANLRDVRIHDLRHTFASVGAAEGKSLYILGKALTHANPATTQRYAHLAD 383 >gi|325983587|ref|YP_004295989.1| integrase family protein [Nitrosomonas sp. AL212] gi|325533106|gb|ADZ27827.1| integrase family protein [Nitrosomonas sp. AL212] Length = 345 Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 49/316 (15%), Positives = 104/316 (32%), Gaps = 17/316 (5%) Query: 17 RHGKIIY-YFRKGHGRRIR-LPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74 + GK + F +G R+R + T + L E + + K+ T Sbjct: 5 KRGKTWWIRFTAPNGERVRCSAATEDKTQAQEFHDKLKAELWLVERLGN--KQKRTWDEA 62 Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134 ++ + + + Q +RK + ++ HI + ++++ +PS+A Sbjct: 63 ACKFLLETQHKATHERDKEKLR-WLQQFLRKKLLNEIDRMLIDHI-AHTKAKETSPSTAN 120 Query: 135 QFLTSMRVLFKWA-VRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193 + L +R + + A E+ P + +R T ++ Q Sbjct: 121 RHLALIRAILRKACYDWEWTDKVP--KIRLFPEPKHRVRWLTPGQVKMLLKELPVHQQDM 178 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQKTGTIITVELPDGFMKLLAMTP 249 + F +GLR S+ + K I V L + +L Sbjct: 179 VIFALS--TGLRQSNVINLEWSQVDLERKAAWVHPDQAKARKAIHVPLNSIALAVLFRQS 236 Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELM 308 + K + + + ++ +AG++ H +R A+ A G + L Sbjct: 237 GKHPSRVFT-YKDRSISWANTSAWRNALKRAGIDNFRWHDLRHTWASWLAQQGTPMNVLQ 295 Query: 309 ATYGWKTVDQAETYTK 324 GW++ + Y Sbjct: 296 ELGGWESEEMVRRYAH 311 >gi|192288937|ref|YP_001989542.1| tyrosine recombinase XerD [Rhodopseudomonas palustris TIE-1] gi|192282686|gb|ACE99066.1| tyrosine recombinase XerD [Rhodopseudomonas palustris TIE-1] Length = 339 Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 54/318 (16%), Positives = 107/318 (33%), Gaps = 41/318 (12%) Query: 51 LTGSTPKREYINSP-RKKPTTLKWLISEYRKS-AHWGSLAVNSRISFESYFDQI------ 102 T + P+ E +P R + L + A + N+ ++ + Sbjct: 9 RTAALPEPEAQAAPLRPASYSDAGLTELFLDMIAAEQGASANTLDAYRRDLADLSHFLSR 68 Query: 103 -IRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV 161 G D + + + +++R SS + L+++R LF++ + + A +P + Sbjct: 69 RRLSIGSADTAAL--RSYLADLDNRGFATSSVARRLSALRHLFRFLLSERIRADDPAAIL 126 Query: 162 ERPKRKTEGIRPWTKEDMQQFKS-------FWSEGSQPRLA-----FEFLLYSGLRCSDS 209 PKR + + D+ + + G++ R A E L +GLR S+ Sbjct: 127 AGPKRGRSLPKVLSIADVDRLLACARQEIDAAEGGARLRAARLNCLLEVLYATGLRVSEL 186 Query: 210 CRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFMKLLAM--------------TPIGKET 254 + + + + K V L G + +A P K Sbjct: 187 VSLPLSAARRDARMIVVRGKGDKERLVPLNAGAKQAMARYLEEVAVATKETKGAPASKWL 246 Query: 255 FFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHELMATY 311 F + + F+ K A +AG++ S H +R A+ GA + Sbjct: 247 FPSFGESGYLTRQHFARDLKDLAARAGLSPRLVSPHVLRHAFASHLLHNGADLRIVQTLL 306 Query: 312 GWKTVDQAETYTKGADRI 329 G + + YT + Sbjct: 307 GHSDISTTQIYTHVVEER 324 >gi|330999644|ref|ZP_08323353.1| site-specific recombinase, phage integrase family [Parasutterella excrementihominis YIT 11859] gi|329574150|gb|EGG55726.1| site-specific recombinase, phage integrase family [Parasutterella excrementihominis YIT 11859] Length = 358 Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 59/314 (18%), Positives = 107/314 (34%), Gaps = 50/314 (15%) Query: 55 TPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKI 114 + + E R TL LI EY + + K Sbjct: 42 SAELEISAEERSSSITLAALIDEYISEVTSQKRSKRTEEIRLRRLQ--RDKLAAKTLSSF 99 Query: 115 TTKHIRSGVESRKH----------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP 164 T + I + +E R +PS+ + LT + +F++A++ E +NPC VE+P Sbjct: 100 TNRTIENYIERRLSERAKNRDNYISPSTVNRELTILSDVFQFAIKNELTDVNPCRGVEKP 159 Query: 165 KRKTEGIRPWTKEDMQQFKSF--WSEGSQPR-------LAFEFLLYSGLRCSDSCRAGVQ 215 + R + ED+++ W + P+ AF F +G+R + + Sbjct: 160 REPEHRERVASDEDIEKLLQASGWDGHTVPKNKMQLAVAAFLFSCQTGMRAGELLKIEYS 219 Query: 216 HLQNNIFSIKTQ--KTGTIITVELPDGFMKLLAMT--PIGKETFFINNDKQKMNATQFSI 271 L +N+ + + KT + V L ++L + + F +N Sbjct: 220 WLGDNVLHVPAEATKTLSRRDVALSARAREILKLVMELEYEPRIF-----GGLNDHNRDT 274 Query: 272 WFKAKATKAGV-------------NKSAHGVRKFSATISA----DAGA---TAHELMATY 311 F+ +AG+ + H R AT +A + GA L Sbjct: 275 LFRKVRDRAGLGPEYDSQNRLIKEGLNFHDGRATFATWAASPDPETGAPRLDVLALARQT 334 Query: 312 GWKTVDQAETYTKG 325 G K + + Y + Sbjct: 335 GHKDLKMLQRYYRA 348 >gi|316931928|ref|YP_004106910.1| tyrosine recombinase XerD [Rhodopseudomonas palustris DX-1] gi|315599642|gb|ADU42177.1| tyrosine recombinase XerD [Rhodopseudomonas palustris DX-1] Length = 327 Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 47/279 (16%), Positives = 94/279 (33%), Gaps = 31/279 (11%) Query: 80 KSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139 SA+ + + G D + + + ++ R SS + L++ Sbjct: 36 ASANTLDAYRRDLADLSHFLSRRRLSIGAADTAAL--RGYLADLDKRGFATSSVARRLSA 93 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS-------FWSEGSQP 192 +R LF++ + + A +P + PKR + + D+ + + ++ Sbjct: 94 LRHLFRFLLSERIRADDPAAILAGPKRGRSLPKVLSIADVDRLLACARQEADAAEGAARL 153 Query: 193 RLA-----FEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFMKLLA 246 R A E L +GLR S+ + + + + K V L G + +A Sbjct: 154 RAARLNCLLEVLYATGLRVSELMALPLSAARRDARIIVVRGKGDKERLVPLNAGAKQAMA 213 Query: 247 M----------TPIGKETFFIN---NDKQKMNATQFSIWFKAKATKAGVN---KSAHGVR 290 P G + ++ D + F+ K A +AG++ S H +R Sbjct: 214 RYLEEVAAVAKDPKGASSKWLFPSFGDSGHLTRQHFARDLKDLAARAGLSPRLVSPHVLR 273 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 A+ GA + G + + YT + Sbjct: 274 HAFASHLLHNGADLRIVQTLLGHSDISTTQIYTHVVEER 312 >gi|294782183|ref|ZP_06747509.1| DNA integration/recombination/inversion protein [Fusobacterium sp. 1_1_41FAA] gi|294480824|gb|EFG28599.1| DNA integration/recombination/inversion protein [Fusobacterium sp. 1_1_41FAA] Length = 360 Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 61/359 (16%), Positives = 127/359 (35%), Gaps = 38/359 (10%) Query: 6 RLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSA-----LTGSTPKREY 60 R P++ ++ R + G R+ L Y A L Sbjct: 17 RRKPWLLRDNKRFNEE-----TGKFERLALGVFETKKEAEIYRIAYFTNNLDMLKKTDIK 71 Query: 61 INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120 I+ ++K T + + + K + + ++E+ F + +K + ++I ++ Sbjct: 72 IHKKKEKSITFEQVYKLWLKD---KDVNKGTLSNYETQFKR-SKKLHKMEMKEINGILLQ 127 Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCL-----SVERPKRKTEGIRPWT 175 S T S+ + ++F +A+ + + N +VE+ + ++ R T Sbjct: 128 DIFYSLDLTNSTLRVLKSFWSMIFDFAILNDMCSKNYAKYLKTKTVEKGNKTSDRERVIT 187 Query: 176 KEDMQQFKSFWSEGSQPR----LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231 +E++Q S + L Y+GLR S+ R + + N + + +K+ + Sbjct: 188 QEELQVLWDNISNNETNKHGIIDMVLILCYTGLRISELLRVKRKDVYLNEYYFEVEKSKS 247 Query: 232 II---TVELPDGFMKLLAMTPIGKETFF-INNDKQKMNATQFSIWFKAKATKAGVN-KSA 286 V + D + L K+TF D + + F F+ G++ S Sbjct: 248 KAGIRKVPIADKIVDLFRARYFSKDTFLWQRLDGLEYDYDSFDNHFRILFRDLGLSYHSL 307 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIRLGIKNSRRISSVVD 344 H R A++ ++ A ++ G Y K +R+ VVD Sbjct: 308 HDTRHTFASLLSNNVADKDAIIKIIGHSNYKTTSDVYIH---------KEIKRLKKVVD 357 >gi|289523043|ref|ZP_06439897.1| integrase/recombinase XerD [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503586|gb|EFD24750.1| integrase/recombinase XerD [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 299 Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 39/265 (14%), Positives = 91/265 (34%), Gaps = 29/265 (10%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH-----IRSGVESRKHTPSSAIQFLTS 139 + N+ ++ + + I+ + + I +H + S + +S ++ + Sbjct: 23 RGYSENTIEAYMTDIAKWIKFCSNQNLDPIPPRHEYMSRFLKAMASEGKSKASLQRYAAA 82 Query: 140 MRVLFKWAVRQEYVAIN---PCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QP 192 +R ++ + +V P L P ++ + R ++ ++++ S +GS + Sbjct: 83 IRSWNRYLTIEGWVDGEQWLPSL----PSKEQKLPRILSEGEIERLISSCRDGSVLGGRD 138 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELP----DGFMKLLAM 247 FE GLR S+ C ++ + +++ K V L + + Sbjct: 139 EALFELAYGCGLRASEVCSLALEDIDWRAGTLRVIGKGDKERVVPLLGSVKEKLRHYVDA 198 Query: 248 TP-----IGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISAD 299 + F+ +K++ + + AG+ H +R AT Sbjct: 199 IRPLLNRREERWLFLTRTGRKLHREDLWRIIRRRGKAAGIPSVRLHPHVLRHSLATHMLR 258 Query: 300 AGATAHELMATYGWKTVDQAETYTK 324 G L G ++ E YT Sbjct: 259 RGLDLRTLQELLGHASISTTERYTH 283 >gi|225386262|ref|ZP_03756026.1| hypothetical protein CLOSTASPAR_00004 [Clostridium asparagiforme DSM 15981] gi|225047634|gb|EEG57880.1| hypothetical protein CLOSTASPAR_00004 [Clostridium asparagiforme DSM 15981] Length = 354 Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 42/276 (15%), Positives = 88/276 (31%), Gaps = 28/276 (10%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES----------RKHTPSSAI 134 L+ + S+ S +++ + ++ I + +K+ S+ Sbjct: 80 RDLSKETLTSYLSAVKRLMVEINGKSLDQMDETDIDWYLTQYEQRNVSSGGKKNEASTVN 139 Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194 + + W + + +A NP S+ K + I ++ E++ + + + R Sbjct: 140 NERRFLSAFYTWMRKAKLIADNPVESIPAKKVPRKPIDYYSAEEIARIRDACK-NPRERA 198 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDG----FMKLLAMT 248 E +G R + + L I+ +K G T+ L D + LA Sbjct: 199 IVEVFRSTGARVGEIAEITLDQLDLETGDIMIQGEKGGRYRTIYLDDDARYYYRMYLATR 258 Query: 249 PIGKETFFINNDK--QKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATA 304 ++ K KM+ + K +AG+ H +RK + G Sbjct: 259 KDDSPYLLPHSRKPYGKMSTDAYRSVMKTIGRRAGLMCRVYPHKMRKTLGMNLKNRGVDL 318 Query: 305 HELMATYGWKTVDQAETY-------TKGADRIRLGI 333 + G Y T + R R+ + Sbjct: 319 GIIQEVLGHANPAVTSQYYAQSTPKTLRSVRERMAV 354 >gi|284037946|ref|YP_003387876.1| integrase family protein [Spirosoma linguale DSM 74] gi|283817239|gb|ADB39077.1| integrase family protein [Spirosoma linguale DSM 74] Length = 390 Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 33/254 (12%), Positives = 89/254 (35%), Gaps = 10/254 (3%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLF 144 G+ + + +++ +IR +G ++T ++ + + + + Sbjct: 128 GNYSYRTLKNYKQALIALIRYAGSIPLDELTRAQYQAYLLFLTEKKRLSSATINVHINAY 187 Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGL 204 K+ + ++ P++ T+ ++ ++++ + + R F + +GL Sbjct: 188 KFYQEKVLQRDKLYFDIDYPRQPTKLPTVYSVDEVRAIIKATTS-LKYRTLFRLIYSTGL 246 Query: 205 RCSDSCRAGVQHLQNNI--FSIKTQKTGTIITVELPDGFMKLLAMTP---IGKETFFINN 259 R S++ + L + +++ K V L + + F + Sbjct: 247 RLSEAAHLHLVDLDRDRRLITVRAGKGKKDRVVMLSEKLDLDINTYLNQYRPHRYLFEDA 306 Query: 260 DKQ-KMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTV 316 + ++ + AG+ K H +R AT ++G + G +++ Sbjct: 307 STREPISIRTIQQVYSNTVRFAGIVKRGGIHSLRHSFATHLLESGVDIRHIQELLGHESI 366 Query: 317 DQAETYTK-GADRI 329 YT AD+I Sbjct: 367 LTTMRYTHVTADKI 380 >gi|150016835|ref|YP_001309089.1| phage integrase family protein [Clostridium beijerinckii NCIMB 8052] gi|149903300|gb|ABR34133.1| phage integrase family protein [Clostridium beijerinckii NCIMB 8052] Length = 292 Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 40/268 (14%), Positives = 94/268 (35%), Gaps = 20/268 (7%) Query: 75 ISEYRKSAHWGSLAVNSRISF----ESYFDQI-IRKSGDFDYRKITTKHIRSGVESRKHT 129 I+ Y+ + N+ ++ Y + +K ++ K T + ++ + Sbjct: 5 INNYKNYLFESGKSENTIYAYVTDVSLYLKFLNRKKIDLYESDKSTVMSYIQNLTNQGKS 64 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF----KSF 185 S + + S+R + + + + P + + K + + T E++ + + Sbjct: 65 ERSINRIVISLRNFYSYLKSETLIKEVPKIEYKSSKNNRKLPQILTIEEVDKIIRIVEKD 124 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKL 244 S+G + E + +G++ S+ V + ++ +K T + + K Sbjct: 125 CSKGIRDNALLELMYATGMKVSELIGLNVDDVNLDLNFVKCTDNKHYERLIPIGRSACKA 184 Query: 245 L--------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSA 294 L + G F+N + K+ K + KAG++K + R A Sbjct: 185 LTEYLSIRYKIAQCGVSNLFVNLNGNKLTRQGIWRIVKEYSRKAGIDKDVNLNTFRHSFA 244 Query: 295 TISADAGATAHELMATYGWKTVDQAETY 322 GA + G + + +TY Sbjct: 245 VHLLQNGANVRAVQKLLGNQVLTYMDTY 272 >gi|34762250|ref|ZP_00143256.1| DNA integration/recombination/invertion protein [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27888108|gb|EAA25168.1| DNA integration/recombination/invertion protein [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 360 Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 57/346 (16%), Positives = 122/346 (35%), Gaps = 32/346 (9%) Query: 19 GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGS-----TPKREYINSPRKKPTTLKW 73 G Y + +R + Y A+ + I ++K T + Sbjct: 25 GPKYYSIEEKRYKRDFIACFKTQKEAETYKLAMFTNNIEMLENTDVKITKNKEKGITFEE 84 Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133 + + KS + ++ ++E F + + G + KI +++ S T S+ Sbjct: 85 IYQLWIKSKE--DVKDGTKTNYEINFKRSKKLCG-LEIAKINGIILQNIFYSLDLTNSTL 141 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERP-----KRKTEGIRPWTKEDMQQF----KS 184 + ++ +A+ + N ++ P K+ + RP T +++Q + Sbjct: 142 RLLRSFWSNIWDFAILNDMATKNYAKFLKLPVQEKGKKTGDRERPLTYDELQALWNNLYN 201 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII---TVELPDGF 241 + + + L Y+GLR + + +++ F + +K+ + V + D Sbjct: 202 YEIDKYKIIDIILILCYTGLRIGELLKVNRKNIYLKDFYFEVEKSKSKAGVRKVPIADKI 261 Query: 242 MKLLAMTPIGKETFFINN-DKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISAD 299 + L K+TF D + + F F+ G++ S H R AT+ +D Sbjct: 262 LDLFKNRYFSKDTFLWQRYDGLEYDYDSFDNHFRILFRDMGLSYHSLHDTRHTFATLLSD 321 Query: 300 AGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSVVD 344 A ++ G + E Y KN +++ VD Sbjct: 322 NVADKDAVIKMIGHSSYKTTSEVYVH---------KNIKKLKEAVD 358 >gi|303246043|ref|ZP_07332324.1| integrase family protein [Desulfovibrio fructosovorans JJ] gi|302492439|gb|EFL52310.1| integrase family protein [Desulfovibrio fructosovorans JJ] Length = 380 Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 49/293 (16%), Positives = 96/293 (32%), Gaps = 32/293 (10%) Query: 53 GSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDY 111 + P + + TL L +Y + E D Q + G+ Sbjct: 76 ATVPPASQVIEKKPTGITLSELGKKYLDHMRASGRTEKHIRNVERLLDNQFVPVIGNKPV 135 Query: 112 RKITTK--------HIRSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV 161 +T + H + S ++ + + ++ + +F + + + +NP + Sbjct: 136 DSLTYQGDMVPFILHFKGVSGSTGKERSQYTVNKYCDYLSFIFNFGIDNGFTRVNPLKNW 195 Query: 162 ERPKRKTEGIRPW----TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSD--SCRAGVQ 215 ++PK + PW T +D ++ + A E G R + Sbjct: 196 KKPKVQ-----PWDLKLTLDDARKIMEHAEP--HLKWAMEVCFNLGTRPGESELLSLRWD 248 Query: 216 HLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINND-KQKMNATQFSIW 272 + I KT T TV + F+K + + + F+ + + Sbjct: 249 DVDFAAGTVRIYASKTKTYRTVPINPEFLKRMEIEKQESVSGFVIEYMGRGLT--TIRKS 306 Query: 273 FKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETY 322 FK +AG+ + +R AT + GA + G TV A+TY Sbjct: 307 FKNACQRAGITYPTRMYDLRHLFATTLLNKGADLAAVSKMMGHSTVKLTADTY 359 >gi|118444090|ref|YP_878186.1| integrase/recombinase, putative [Clostridium novyi NT] gi|118134546|gb|ABK61590.1| integrase/recombinase, putative [Clostridium novyi NT] Length = 274 Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 41/221 (18%), Positives = 76/221 (34%), Gaps = 19/221 (8%) Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV--ERPKRKTEGIRPWTKEDMQ 180 + R + + L S+ K+ N + + E+ + + + ED++ Sbjct: 59 IYDRGLKIKTINRKLVSINQFLKF--------NNITVDIRQEKVQMQNFLDDILSNEDVK 110 Query: 181 QF--KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238 ++ + + R L Y+G+R S+ + + ++ +I K V +P Sbjct: 111 ALVNATYKKDDLRARAIIYTLYYTGMRVSEMLQLTIYDIKKQSITI-LGKGSKHREVFVP 169 Query: 239 DGFM---KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKF 292 + + I K T + +N K A AGVNKS AH R Sbjct: 170 NKLKDIWEAYMNVRIKKGTALFTGKRGPINRKTVDSLIKEYAALAGVNKSKAHAHNFRHL 229 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 AD G + G + ++ YT+ L I Sbjct: 230 YCKNLADKGIDISTIADIAGHQNINTTRIYTRKTKEELLDI 270 >gi|226946779|ref|YP_002801852.1| site-specific tyrosine recombinase XerC [Azotobacter vinelandii DJ] gi|259710429|sp|C1DJ58|XERC_AZOVD RecName: Full=Tyrosine recombinase xerC gi|226721706|gb|ACO80877.1| tyrosine recombinase XerC [Azotobacter vinelandii DJ] Length = 299 Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 31/259 (11%), Positives = 82/259 (31%), Gaps = 19/259 (7%) Query: 85 GSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSGVES---RKHTPSSAIQFLT 138 ++ ++ + ++ + G + + +R + + H+ S + L+ Sbjct: 16 RQVSQHTLDGYRRDLAKVHAHCEREGLDAWSALDAGRLRRLIARLHLQGHSSRSLARLLS 75 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRL 194 ++R +++ +R+ +P + PK + R + QQ E + + Sbjct: 76 ALRGFYRYLLREGRCRHDPAAGLSPPKGERRLPRTLDADRTQQLLDGAVEDDFIARRDQA 135 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII-TVELPDGFMKLLAM------ 247 E SGLR S+ + L ++ G + + + L Sbjct: 136 MLELFYSSGLRLSELVGLDLDRLDLAAGLVRVHGKGNKARDLPIGSKAREALRAWLSLRA 195 Query: 248 -TPIGKETFFINNDKQKMNATQFSIWFKAK-ATKAGVNKSAHGVRKFSATISADAGATAH 305 F+ +++ + + + G + H +R A+ ++ Sbjct: 196 QARPADGALFVGRTGRRLTPRAVQLRVRQAGVRELGQHLHPHMLRHSFASHLLESSQDLR 255 Query: 306 ELMATYGWKTVDQAETYTK 324 + G + + YT Sbjct: 256 AVQELLGHADIATTQIYTH 274 >gi|91781471|ref|YP_556677.1| site-specific tyrosine recombinase XerC [Burkholderia xenovorans LB400] gi|91685425|gb|ABE28625.1| Putative integrase/recombinase [Burkholderia xenovorans LB400] Length = 307 Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 42/279 (15%), Positives = 89/279 (31%), Gaps = 30/279 (10%) Query: 75 ISEYRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTP 130 I+ Y + H L+ ++ + +++ + ++ IR V T Sbjct: 7 IAAYLSNLEHERRLSAHTLRGYTHELEELKLLAKGRPLESLSAVDIRGAVSRAHAGGLTA 66 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQFKSFW 186 S L++ R ++W + + NP +V PK+ + + +D M+ + Sbjct: 67 RSISHRLSAWRAFYRWLAGRVDLPANPVATVRAPKQPKTLPKALSVDDATRLMESPPAAS 126 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRA------GVQHLQNNIFSI------KTQKTGTIIT 234 EG + E SGLR ++ + + K Sbjct: 127 PEGLRDHAMLELFYSSGLRLAELVGLDARFADADGYRSAGWIKLDSAEVEVLGKGNRRRV 186 Query: 235 VELPDGFMKLLAMTPIGKE--------TFFINNDKQKMNATQFSIWFKAKATKAGVNK-- 284 V + ++ LA ++ F++ +++ K A AG+ Sbjct: 187 VPVGSKALEALAAWLAVRDQMVKHDPHPLFLSARGNRLSPNVVRERVKRAALVAGIPANV 246 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 H +R AT + + G ++ + YT Sbjct: 247 HPHVLRHSFATHVLQSSGDLRAVQELLGHASITATQVYT 285 >gi|15618932|ref|NP_225218.1| site-specific tyrosine recombinase XerD [Chlamydophila pneumoniae CWL029] gi|15836555|ref|NP_301079.1| site-specific tyrosine recombinase XerD [Chlamydophila pneumoniae J138] gi|16752001|ref|NP_445367.1| site-specific tyrosine recombinase XerD [Chlamydophila pneumoniae AR39] gi|34223088|sp|Q9Z6N5|XERD_CHLPN RecName: Full=Tyrosine recombinase xerD gi|4377356|gb|AAD19161.1| Integrase/recombinase [Chlamydophila pneumoniae CWL029] gi|7189741|gb|AAF38621.1| integrase/recombinase XerD [Chlamydophila pneumoniae AR39] gi|8979397|dbj|BAA99231.1| integrase/recombinase [Chlamydophila pneumoniae J138] Length = 301 Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 41/258 (15%), Positives = 80/258 (31%), Gaps = 24/258 (9%) Query: 89 VNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAV 148 R S+ I S D + + + RK ++ + L +++V F + Sbjct: 32 AAYRQDISSFLT-ISAISSPQDISQNSVYIFAEELYRRKEAETTLARRLIALKVFFLFLK 90 Query: 149 RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS--------EGSQPRLAFEFLL 200 Q+ + P +E PK T +++ + + L Sbjct: 91 DQQLLPYPPI--IEHPKIWKRLPSVLTPQEVDALLAVPLQMEKNPRHLAFRDTAILHTLY 148 Query: 201 YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM-----------TP 249 +G+R S+ C + H+ ++ + T K V L + + Sbjct: 149 STGVRVSELCDLRLGHVSDDCIRV-TGKGSKTRLVPLGSRAREAIDAYLCPFRDQYQKKN 207 Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATK-AGVNKSAHGVRKFSATISADAGATAHELM 308 ++ F++ K+ + A + S H +R AT D A + Sbjct: 208 PHEDHLFLSTRGHKLERSCVWRRIHNYAKQVTSKPVSPHSLRHAFATHLLDNKADLRVIQ 267 Query: 309 ATYGWKTVDQAETYTKGA 326 G + E YT A Sbjct: 268 EMLGHARIASTEVYTHVA 285 >gi|150388670|ref|YP_001318719.1| phage integrase family protein [Alkaliphilus metalliredigens QYMF] gi|149948532|gb|ABR47060.1| phage integrase family protein [Alkaliphilus metalliredigens QYMF] Length = 382 Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 55/354 (15%), Positives = 112/354 (31%), Gaps = 47/354 (13%) Query: 16 TRHGKIIYYFRKG----HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71 R + +R G R + A+ + + Sbjct: 5 VRKRGNTWSYRIDLGIVDGSRKQKETGGFKKKSEAHSALRKAIDELENTGGVFEPTTISF 64 Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130 ++ + ++ L NS+ + + + I G++ +IT++ +++ + ++K Sbjct: 65 SDYLNYFIENYIEIHLRENSQRARQHIIKNHIRPAFGNYKIMQITSQALQNFI-TKKSKA 123 Query: 131 SSAIQFL---TSMRVLFKWAVRQEYVAINPCLSVERPKRKT----EGIRPWTKEDMQQFK 183 S ++ FK AV E++ INP V+ PKR + I+ + E++ + Sbjct: 124 YSKNYISMIHATLSTAFKMAVEWEFIRINPMTRVKVPKRDDQEMDKEIKTLSPEEVNRCA 183 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-----GTIITVELP 238 +G+ + F ++GLR + + + + K P Sbjct: 184 ERL-QGTHHYIPFMIAFHTGLRAGEVSALQWSDIDFDNQMLSVTKRLDYSASKENWEFKP 242 Query: 239 DGFMKLLAMTPIGKETFFINN------------DKQKMNATQFSIWFK---AKATKA--- 280 IG E I + F F+ TKA Sbjct: 243 PKTRSSNRTIAIGNELITILKSHSINQKKNKLKYGKHYTENDFICTFENGEVVITKAIGR 302 Query: 281 ---------GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324 ++ + H +R AT+ +AG + G TV +TY+ Sbjct: 303 VSEIIIRDVKIDFNFHMLRHTHATMLLEAGINPKVVQERLGHSTVSITLDTYSH 356 >gi|253575352|ref|ZP_04852690.1| phage integrase [Paenibacillus sp. oral taxon 786 str. D14] gi|251845349|gb|EES73359.1| phage integrase [Paenibacillus sp. oral taxon 786 str. D14] Length = 380 Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 43/303 (14%), Positives = 98/303 (32%), Gaps = 42/303 (13%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD-----------------FDYRK 113 ++ L + + ++ + ++ + + ++ D Sbjct: 82 IQALDQKLLTTLKLKGYSLKTSKAYRGHVRRYLQNLADHLKMKSPGTLKDEKMTSAIIDS 141 Query: 114 ITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE--RPKRKTEGI 171 T+ + + H+P+ Q ++++R L +Q P ++ RP+++ + Sbjct: 142 SRTQQYALQLLEQGHSPAYVNQAISALRFLAVEVFKQ------PSEQMKYIRPQKEKKLP 195 Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKT 229 +++++ + + R SGLR S+ R V + I ++ K Sbjct: 196 YVLSEQEVLRVIQ-APTNLKHRTMLYLAYASGLRVSEVVRLKVTDIDPERGILRVRQGKG 254 Query: 230 GTIITVELP----DGFMKLLAMTPIGKETFFI--NNDKQKMNATQFSIWFKAKATKAGVN 283 L D K + + + + ++ F+ +G+ Sbjct: 255 KKDRHTLLSQTAWDMIQKYVEAERLSNSMWLFPGQHSGSHLHERSLQKVFQEALQTSGIR 314 Query: 284 KS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341 K H +R AT + G + G E YT + KN +RI S Sbjct: 315 KQVGIHVLRHSFATHLLENGTDLRYIQELLGHANPSTTERYTH------VSTKNLKRIKS 368 Query: 342 VVD 344 +D Sbjct: 369 PLD 371 >gi|330963829|gb|EGH64089.1| site-specific recombinase, phage integrase family protein [Pseudomonas syringae pv. actinidiae str. M302091] Length = 355 Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 53/290 (18%), Positives = 108/290 (37%), Gaps = 27/290 (9%) Query: 60 YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119 YI + TL+ + Y S + ++ + + Q+I G + ++ + I Sbjct: 50 YIQRSGSERMTLEMALKRYL-SEISPTKKPTTQRAEATKAQQLISHLGKYSMAALSAEII 108 Query: 120 RSGVESR------KHTPSSAIQF---LTSMRVLFKWAVRQEY---VAINPCLSVERPKRK 167 ++R + P+S L + LF A+ QE+ ++ NP L++ +P Sbjct: 109 AGYRDTRLASITNRGKPTSNNTVRLELALLSHLFTVAI-QEWGLGLSFNPVLNIRKPSTG 167 Query: 168 TEGIRPWTKEDMQQFKSFWSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQNN--IFS 223 R + E+ ++ + + S P L L +G+R S+ + + Sbjct: 168 EGRDRRLSAEEERRLLTAVNNHSNPMLGWIVRIALETGMRSSEITSLRRHQVDMKKRVVR 227 Query: 224 IKTQKTGTIITVELPDGFMKLLAMT------PIGKETFFINNDKQ--KMNATQFSIWFKA 275 + K + TV L + PI + F + K + F+ + Sbjct: 228 LSDTKNDSARTVPLSKWATETFQAALNNPIRPIDCDLVFFGEPGKNGKRSPYAFTKTWGL 287 Query: 276 KATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 TK G+ + H +R + + + G + E+ A G K++ + YT Sbjct: 288 LKTKLGMPDLRFHDLRHEAVSRLVEGGLSDQEVSAISGHKSMQMLKRYTH 337 >gi|220918789|ref|YP_002494093.1| integrase family protein [Anaeromyxobacter dehalogenans 2CP-1] gi|219956643|gb|ACL67027.1| integrase family protein [Anaeromyxobacter dehalogenans 2CP-1] Length = 392 Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 53/301 (17%), Positives = 96/301 (31%), Gaps = 25/301 (8%) Query: 45 PAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QII 103 A + L G E TL ++ + A ++ + ES ++ Sbjct: 68 EAIHAKLNGKGAANEARVP------TLAEFEKQFIEHARANRQKASTVYAKESILRVHLV 121 Query: 104 RKSGDFDYRKITTKHIRSGVESRK-HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE 162 G +IT +++ + H P + L ++ L + A R + P S E Sbjct: 122 PVLGTKRLDEITEADVQALKVTLAEHRPKTVNNVLATLSKLLRVAKRLGVIDAVPVESFE 181 Query: 163 RPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS--GLRCSDSCRAGVQHLQNN 220 K + +T E+ + + PR+ LL GLR + + ++ Sbjct: 182 LVKAPLAAVPFYTFEEYAVLVA-AARRLDPRILAAVLLGGNAGLRAGEVVALELPDVRRA 240 Query: 221 IFSIKTQ-----------KTGTIITVELPDGFMKLLAMT-PIGKETFFINNDKQKMNATQ 268 I + K G V + D LA + + +D + A Sbjct: 241 NARITIERQAWRGVVDTPKGGKGRVVPMTDALKAALAAVRHLRGARVLVQDDGSDLTAKV 300 Query: 269 FSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 W K+ AG+ + H +R + A GA A + G + Y A Sbjct: 301 LRGWMKSAQRLAGLRPTGNFHILRHTFCSHLAMRGAPAKVIQELAGHTHLSTTMRYMHLA 360 Query: 327 D 327 + Sbjct: 361 E 361 >gi|91781187|ref|YP_556394.1| putative phage integrase [Burkholderia xenovorans LB400] gi|121582724|ref|YP_973166.1| phage integrase family protein [Polaromonas naphthalenivorans CJ2] gi|91693847|gb|ABE37044.1| putative phage integrase [Burkholderia xenovorans LB400] gi|120595986|gb|ABM39424.1| phage integrase family protein [Polaromonas naphthalenivorans CJ2] Length = 400 Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 55/297 (18%), Positives = 100/297 (33%), Gaps = 19/297 (6%) Query: 48 MSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKS 106 A + +K T+K L + +++ ++ D+ II Sbjct: 77 WLAEVRRGGDPGGDKAEARKAPTVKELCGRFMSDYSKVRNKPSTQKGYQGNIDRNIIPIL 136 Query: 107 GDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVA--INPCLSVERP 164 G + + + + ++ + TP A L MR +F A NPC + + Sbjct: 137 GRMKVQDVKRPDVATMMKKLESTPMEANHTLAVMRKMFNMAEIWGLRTDGTNPCRHIPQ- 195 Query: 165 KRKTEGIRPWTKEDM-------QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL 217 + + R T E+M + ++ SE LA R S+ + Sbjct: 196 YPQGKTTRLITDEEMGKLFRHLDKVEAESSEPPIVTLAIRLQFEFAARRSEILLLEWTWV 255 Query: 218 Q--NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFF----INNDKQKMNATQFSI 271 N + KTG + + + +LL+ P + + + + + + M + Sbjct: 256 DLENRRVAWPDSKTGGMSK-PMSEEAHRLLSTVPRHEGSLYVLPSLRDPLKHMTNGEHYN 314 Query: 272 WFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 + AGV HG+R SAT A++G M KTV Y D Sbjct: 315 GWSRILKAAGVQHVGTHGIRHRSATDIANSGIPVKVGMVLTAHKTVAMFMRYIHTED 371 >gi|266620141|ref|ZP_06113076.1| tyrosine recombinase XerD [Clostridium hathewayi DSM 13479] gi|288868265|gb|EFD00564.1| tyrosine recombinase XerD [Clostridium hathewayi DSM 13479] Length = 323 Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 39/286 (13%), Positives = 90/286 (31%), Gaps = 45/286 (15%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHTPSSAIQFLTSM 140 +L+ + +++S + + Y I I ++K +P S + S+ Sbjct: 23 RNLSGKTIYAYKSDLLCMFTWLNENKYESINPHSISDYFLYLQNNKKLSPRSIRRKYVSI 82 Query: 141 RVLFKWAVRQEYVAINPCLSV---------ERPKRKTEGIRPWTKEDMQQFKSFWSEG-- 189 + F + IN V + + R +K ++ Q + S+ Sbjct: 83 KQFFHY--------INVEKGVNEIFMKFSSRKFQLPKSLPRTLSKMEVNQLIATVSKEYK 134 Query: 190 -----------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI------ 232 + E L GLR + ++ + S G Sbjct: 135 SASTDFYRRLCLRDMCIIEILFCLGLRIGEVAALNIEDYDSGEASFLIHGKGNKERMLFI 194 Query: 233 ITVELPDGFMKLLAMTP---IGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAH 287 ++ + K + + + F+N ++++ F A +N + H Sbjct: 195 SSITVNQKLQKWIRTRQEFNLQDDALFVNKYGKRLSIYSIENLFYKYRELAHINSEATPH 254 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 +R AT + GA + G ++ + YT+ + + + + Sbjct: 255 YLRHSFATQLLNNGADIRAVQDILGHSSIVTTQIYTEVSLKRKKEV 300 >gi|254460911|ref|ZP_05074327.1| tyrosine recombinase XerC [Rhodobacterales bacterium HTCC2083] gi|206677500|gb|EDZ41987.1| tyrosine recombinase XerC [Rhodobacteraceae bacterium HTCC2083] Length = 306 Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 42/271 (15%), Positives = 84/271 (30%), Gaps = 28/271 (10%) Query: 88 AVNSRISFESYFDQII--------RKSGDFDYRKITTKHIRSGVESRKH---TPSSAIQF 136 + N+ ++ + I G +ITT+ +R+ + + + S + Sbjct: 26 SENTIKAYSADTADFIGFMTSYKSEPQGLAALARITTRDMRAWMAQTRGDEVSARSLARK 85 Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK-------SFWSEG 189 L+S++ ++W +E L++ PK + + RP E + + Sbjct: 86 LSSVKSFYRWLAEREGFEPTAVLTIRAPKFQKKLPRPLAVEAAKAMIETVEYQTAHTWVA 145 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM-- 247 ++ L GLR S++ + K G V + + + Sbjct: 146 ARDSAVLTLLYGCGLRISEALGLTGADVPLPTALRILGKGGKERVVPVLPAAREAVQAYL 205 Query: 248 -----TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADA 300 F +N + G+ +A H +R AT A Sbjct: 206 NICPYPLEPNAPLFRGIRGGALNPRAVQSVMAKARMQLGLPATATPHAMRHSFATHLLSA 265 Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRL 331 G + G ++ + YT D RL Sbjct: 266 GGDLRSIQELLGHSSLSTTQAYT-AVDTARL 295 >gi|149278899|ref|ZP_01885034.1| integrase [Pedobacter sp. BAL39] gi|149230518|gb|EDM35902.1| integrase [Pedobacter sp. BAL39] Length = 294 Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 47/271 (17%), Positives = 86/271 (31%), Gaps = 26/271 (9%) Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIRKSGDF------DYRKITTKHIRSGVESRKHTPS 131 Y K H + ++ S+E+ Q D D + + + R+ Sbjct: 9 YLK--HEKRYSPHTIQSYETDLLQFEAYLSDVYELALPDAGRAQVRDYMVWLMERQIAER 66 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS- 190 S + L+++R +K V +A +P V PK + Q + Sbjct: 67 SVARKLSALRSFYKHLVAGGAIASSPMALVRAPKVPNRLPVFVEDHKLDQLLDSTEIFND 126 Query: 191 -----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKL 244 + +L E L +G+R S+ +Q + S+K K + + L Sbjct: 127 SFSSVRDKLVIEMLFGTGMRVSELVNVKLQDVDFYASSVKVLGKRNKERIIPIGKTLTSL 186 Query: 245 LAMTPIGK---------ETFFINNDKQKMNATQFSIWFKAKA--TKAGVNKSAHGVRKFS 293 L + K E F+ N + + KS H +R Sbjct: 187 LKVYIDTKTLQDFNNKTEYLFVTNKGAAVTRGFIYKIVTSYLTYVSTQDKKSPHVLRHSY 246 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTK 324 AT + GA + + G ++ + YT Sbjct: 247 ATSLLNRGADLNAIKELLGHASLAATQVYTH 277 >gi|254294584|ref|YP_003060607.1| integrase family protein [Hirschia baltica ATCC 49814] gi|254043115|gb|ACT59910.1| integrase family protein [Hirschia baltica ATCC 49814] Length = 318 Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 44/296 (14%), Positives = 98/296 (33%), Gaps = 32/296 (10%) Query: 66 KKPTTLKWLISEYRKSA-HWGSLAVNSRISFES--------YFDQIIRKSGDFDYRKITT 116 P T + + + H ++ ++ + + + ++ D +T Sbjct: 14 HAPNTASQALYAFVEHLTHERRMSEHTIDGYRRDVGNFLGFLVNHLGGEAHVNDLVNLTP 73 Query: 117 KHIRSGVESRKHT----PSSAIQFLTSMRVLFKWAVRQEYVAINP-CLSVERPKRKTEGI 171 +R+ + R+ +S + L+++R FK+ + ++ N V+ PKR Sbjct: 74 SDVRAWLAFRRANDDLQATSISRALSAVRAFFKY-LDRQLDKPNARIQMVKAPKRPQRLP 132 Query: 172 RPWTKE-------DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224 RP ++E +++ ++ + +GLR S++ + Sbjct: 133 RPVSQEIAKNLLKEVENQDVEPWIAARDAAMVALMYGAGLRISEALSLTDADVPARDILR 192 Query: 225 KTQKTGTIITVELPDGFMKLLAM-------TPIGKETFFINNDKQKMNATQFSIWFKAKA 277 K + V L L + + F +K+N + Sbjct: 193 IQGKGNKVRLVPLIPAVRDALNVYYEKRPFLSDEEGPLFRGVKGKKLNPRIIQKLIEKLR 252 Query: 278 TKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIR 330 G+ + H +R AT GA + G ++ + YT ADR++ Sbjct: 253 ISMGLPDTATPHALRHSFATHLLANGADLRSIQTLLGHASLSSTQIYTGVEADRLK 308 >gi|226307996|ref|YP_002767956.1| integrase [Rhodococcus erythropolis PR4] gi|226187113|dbj|BAH35217.1| putative integrase [Rhodococcus erythropolis PR4] Length = 374 Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 51/280 (18%), Positives = 94/280 (33%), Gaps = 35/280 (12%) Query: 88 AVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKW 146 +R Y D+ I+ + + + + +R+ S P+ + +R + Sbjct: 96 KPRTRDLNRGYLDRVILPTFANLELEGLNVQMVRTWFASLDARPTRNANAYSLLRTILNQ 155 Query: 147 AVRQEYVAINPCLSVER--PKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGL 204 A+ E + +NPC ++R K + + +++ + S + R +SGL Sbjct: 156 ALDDELIQVNPCR-IKRAAVKVRVVEPIALSAGEVRALSAAMSI-ERWRALVLVAGFSGL 213 Query: 205 RCSDSCRAGVQHL-----------------QNNIFSIKTQKTGTII-TVELPDGFMKLL- 245 R + + + F I K+ + TV LP + L Sbjct: 214 RWGELAALRRSDVVLTDSECSVTVARAVVRRTGEFVIGRPKSHAALRTVPLPSALREALE 273 Query: 246 -----AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKFSATIS 297 P F + + K A A + H +R +AT+ Sbjct: 274 DHLELYALPGRNGLVFPSVGGTVAHENVVRPHLKKAA--AKIGHQSFRFHDLRHTAATMF 331 Query: 298 ADAGATAHELMATYGWKTVDQAETYTKG-ADRIRLGIKNS 336 A AGAT + M G + + YT A R R ++N Sbjct: 332 AQAGATLADHMTLMGHTSAAMSARYTHSTASRNRELVENM 371 >gi|294778653|ref|ZP_06744075.1| site-specific recombinase, phage integrase family [Bacteroides vulgatus PC510] gi|294447602|gb|EFG16180.1| site-specific recombinase, phage integrase family [Bacteroides vulgatus PC510] Length = 430 Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 49/284 (17%), Positives = 99/284 (34%), Gaps = 29/284 (10%) Query: 78 YRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT---TKHIRSGVESRKHTPSSA 133 + KSA +++ + S + D++ +T + + + + ++ Sbjct: 135 FAKSAIDNSDKKQSTKDNLHSTLAVLHDFRSGLDFKDLTYTFLRDFEQYLREKGNAVNTI 194 Query: 134 IQFLTSMRVLFKWAVRQEYVAIN--PCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191 + + +R L A+ Q Y+ + P + K++ T +++++ ++ E Sbjct: 195 AKHMRQLRTLVNEAINQGYMHADAYPFRKYK-IKQEKGRHEFLTPDELKKLETVKVEEES 253 Query: 192 PR---LAFEFLLYSGLRCSDSCRAGVQHLQN----NIFSIKTQKTGTIITVELPDGFMKL 244 R AF F Y+GLR SD C+ ++ K+ KTG I + L + Sbjct: 254 MRHVLDAFLFCCYTGLRYSDFCQLTPENFIRINGKRWLYFKSVKTGVEIRLPLH--LLFE 311 Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADAGA 302 I I + ++ + + A G+ K H R AT+ G Sbjct: 312 SRALGILDRYPDIGSFAALPCNSEVNKQLRKLAELCGIKKRITYHVSRHTCATLLVHQGV 371 Query: 303 TAHELMATYGWKTVDQAETYT-----------KGADRIRLGIKN 335 + G +V + Y+ K R R +K Sbjct: 372 AITTVQKLLGHTSVKTTQIYSEVLSSTIVRDLKNVQRKRKKVKM 415 >gi|239621228|ref|ZP_04664259.1| site-specific tyrosine recombinase XerC [Bifidobacterium longum subsp. infantis CCUG 52486] gi|239515689|gb|EEQ55556.1| site-specific tyrosine recombinase XerC [Bifidobacterium longum subsp. infantis CCUG 52486] Length = 357 Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 49/329 (14%), Positives = 91/329 (27%), Gaps = 82/329 (24%) Query: 76 SEYRKSAHWGSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIRSGV--ESRKHTP 130 Y KS L+ N+ ++ + + G D +IT +RS + ESR H Sbjct: 14 VSYLKSNR--GLSANTLKAYRADLTACLHLFELRGVTDLNEITLDDLRSWMAVESRDHAR 71 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK------- 183 SS + ++R F WA +P ++ P + T+ +Q Sbjct: 72 SSMARKTVAVRGFFAWAYEHGVTNTDPAATLMTPSIPSTLPAVLTESQAEQLLDVAEQAV 131 Query: 184 ----------------------------------------SFWSEGSQPRLAFE------ 197 + + R+ E Sbjct: 132 ATNQYKGDGGAAAASGSGSGKAVGKTADKSADTVNRNEAPARADKRDSARVVAESQRNAA 191 Query: 198 ---FLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPD------------- 239 L +G+R ++ + + N + + + Sbjct: 192 ILELLYATGIRVAELVSMDIVDVDFSNRTIKVTGKGNKQRVVPFGLPAQRALETWLEQGR 251 Query: 240 ---GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSAT 295 A F+ +++ A +AGV + S H +R +AT Sbjct: 252 PVLARTATDAAKSRAANALFLGARGGRIDQRIARDIVHRAAREAGVPDISPHALRHSAAT 311 Query: 296 ISADAGATAHELMATYGWKTVDQAETYTK 324 D GA E+ G ++ + YT Sbjct: 312 HMLDGGADLREVQEMLGHSSLKTTQRYTH 340 >gi|329314712|gb|AEB89125.1| Integrase [Staphylococcus aureus subsp. aureus T0131] Length = 390 Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 63/385 (16%), Positives = 129/385 (33%), Gaps = 62/385 (16%) Query: 17 RHGKIIYYFRK---GHGRRIRLPYPHESTF----IPAYMSALTGSTPKREYINSPRKKPT 69 + G + +R + Y S F + + + + +P + Sbjct: 6 KRGNT-WRYRISLGKDAETGKYKYISNSGFKRKSDAKHHAEMVERQLRNGDYIAP--STS 62 Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129 T K + ++ S + + V+S + E + I + + + I + V Sbjct: 63 TFKQVADDWI-SQYANEVKVSSVRAREKAINHAIERFNNKPIQTINKHEYQRFVNDISAQ 121 Query: 130 PSSA--IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK--------TEGIRP-WTKED 178 S + S ++FK+A + + I P ++RPK+K TE + K++ Sbjct: 122 YSKNYVDSIIASTNMIFKYAYDMKLIRIMPSEGIKRPKKKISVEELEDTEIHKKFLEKDE 181 Query: 179 MQQFKSFWSEGSQPRLAFEF---LLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQ------ 227 + QF P+ +FE L Y+G+R + + NN +I Sbjct: 182 LFQFLEVAKNHHSPQNSFELFCTLAYTGMRAGELLALKWSDIDFENNTINITKTYYNPNN 241 Query: 228 ----------KTGTII-TVELPDGFMKLLAMTP------------IGKETFFINNDKQKM 264 KT + I + + +KLL + F + + + Sbjct: 242 NKKQFQILTPKTESSIGKISVDPHVIKLLKNYKVDVQDTWKNELYVDNNFVFTDVNGYPL 301 Query: 265 NATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE- 320 + +W KA K + S H R + +AG E+ K ++ Sbjct: 302 VIKKLQLWIKAILKKTDITNKQISTHSFRHTHCALLIEAGVHIKEIQERLRHKDINTTMN 361 Query: 321 TYTKGADRIRLGIKNSRRISSVVDS 345 Y K + + S++ S ++++ Sbjct: 362 IYAKITNSYKK--DASQKFSKLMEN 384 >gi|237729900|ref|ZP_04560381.1| phage integrase [Citrobacter sp. 30_2] gi|226908506|gb|EEH94424.1| phage integrase [Citrobacter sp. 30_2] Length = 398 Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 60/285 (21%), Positives = 111/285 (38%), Gaps = 14/285 (4%) Query: 51 LTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNS-RISFESYFDQIIRKSGDF 109 + T R + R P TL+ S+Y W L S + + D I G+ Sbjct: 89 IATGTDPRYERDKCRAIP-TLQEAFSQYY--FPWAKLHKKSWNKDEQRFRDHIAPVMGNL 145 Query: 110 DYRKITTKHIRSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167 +IT +H+ S T P++ + + ++ L +W++R E VA NP + + Sbjct: 146 LLNEITPRHVTHLQSSLCETCQPATNNRVIALLKALLRWSLRHEMVATNPAANTPLLREN 205 Query: 168 TEGIRPWTKEDMQQ-FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRA-GVQH--LQNNIFS 223 R +++ ++++ F++ + S+ + LL D R H LQ Sbjct: 206 NARQRYFSETEIRRIFEAASEDNSRVASIYIRLLLLTGLRRDELRLAKWAHYSLQQGTLW 265 Query: 224 IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK-QKMNATQFSIWFKAKATKAGV 282 + K GT V L D +KL+A P ++ K + F+ +AG+ Sbjct: 266 LPETKNGTGRLVHLNDWAIKLIAELPRFGGNIWMFGGKIPGKPVCNVTKAFRRIIRRAGI 325 Query: 283 ---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H R A + G T +++ A G +++ ++ Y Sbjct: 326 YDDEVCIHTCRHSVAALIVSRGGTLYDVQAQLGHRSIQSSQRYAH 370 >gi|166710518|ref|ZP_02241725.1| site-specific tyrosine recombinase XerC [Xanthomonas oryzae pv. oryzicola BLS256] Length = 345 Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 39/267 (14%), Positives = 89/267 (33%), Gaps = 27/267 (10%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDF-------------DYRKITTKHIRSGV---ESRKH 128 ++ ++ ++ ++ +G+ D ++ + H+R V R Sbjct: 55 RQVSAHTLDAYRRDLAALVAWTGERNTEDGAQQTATPVDSAQLDSAHLRQFVAAEHRRGL 114 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF--- 185 +P S + L++ R + W ++ +A +P ++ PK + + ++ + Sbjct: 115 SPKSLQRRLSACRSYYAWLLKHGRIAASPAAALRAPKAPRKLPQVLDADEAVRLVEVPTD 174 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKL 244 G + R E SGLR S+ C + L ++ + K V + + Sbjct: 175 APLGLRDRALLELFYSSGLRLSELCALRWRDLDLDSGLVMVLGKGSKQRLVPVGSHAIAA 234 Query: 245 LAM-----TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATIS 297 L F ++ I K A + G+ + H +R A+ Sbjct: 235 LRQWRRDSGASADAHVFPGRAGGAISQRAVQIRIKQLAVRQGMFKDVHPHMLRHSFASHI 294 Query: 298 ADAGATAHELMATYGWKTVDQAETYTK 324 ++ + G + + YT Sbjct: 295 LESSGDLRGVQELLGHSDIATTQIYTH 321 >gi|138563|sp|P25426|VINT_BPMFR RecName: Full=Integrase gi|15091|emb|CAA45229.1| integrase [Mycobacterium phage FRAT1] Length = 333 Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 50/299 (16%), Positives = 102/299 (34%), Gaps = 40/299 (13%) Query: 53 GSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDY 111 K+ ++ + T KW+ LA ++ + ++ +I GD Sbjct: 23 AEREKKAAASAITVEEYTKKWIAER--------DLAGGTKDLYSTHARKRIYPVLGDTPV 74 Query: 112 RKITTKHIRSGVESR-KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170 ++T +R+ K P++ +R + AV + V+ NPC +E+ Sbjct: 75 AEMTPALVRAWWAGMGKQYPTARRHAYNVLRAVMNTAVEDKLVSENPCR-IEQKAPAERD 133 Query: 171 IRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQK 228 + T E++ R+A L ++ LR + + + ++ ++ ++ Sbjct: 134 VEALTPEELDVVAG--EVFEHYRVAVYILAWTSLRFGELIEIRRKDIMDDGETMKLRVRR 191 Query: 229 TGTII----------------TVELPDGFMKLLAM--------TPIGKETFFINNDKQKM 264 + V +P ++ + Q++ Sbjct: 192 GPARVGEKIVVGNTKTVRSKRPVTVPPHVAAMIRAHMADRTKMNKGPEALLVTTTRGQRL 251 Query: 265 NATQFSIWFKA-KATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 + + F+ K A + H +R AT++A AGAT ELM G T A Y Sbjct: 252 SKSAFTRSLKKGYAKIGRPDLRIHDLRAVGATLAAQAGATTKELMVRLGHTTPRMAMKY 310 >gi|33242394|ref|NP_877335.1| site-specific tyrosine recombinase XerD [Chlamydophila pneumoniae TW-183] gi|33236905|gb|AAP98992.1| tyrosine recombinase [Chlamydophila pneumoniae TW-183] gi|269302825|gb|ACZ32925.1| tyrosine recombinase XerD [Chlamydophila pneumoniae LPCoLN] Length = 299 Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 41/258 (15%), Positives = 80/258 (31%), Gaps = 24/258 (9%) Query: 89 VNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAV 148 R S+ I S D + + + RK ++ + L +++V F + Sbjct: 30 AAYRQDISSFLT-ISAISSPQDISQNSVYIFAEELYRRKEAETTLARRLIALKVFFLFLK 88 Query: 149 RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS--------EGSQPRLAFEFLL 200 Q+ + P +E PK T +++ + + L Sbjct: 89 DQQLLPYPPI--IEHPKIWKRLPSVLTPQEVDALLAVPLQMEKNPRHLAFRDTAILHTLY 146 Query: 201 YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM-----------TP 249 +G+R S+ C + H+ ++ + T K V L + + Sbjct: 147 STGVRVSELCDLRLGHVSDDCIRV-TGKGSKTRLVPLGSRAREAIDAYLCPFRDQYQKKN 205 Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATK-AGVNKSAHGVRKFSATISADAGATAHELM 308 ++ F++ K+ + A + S H +R AT D A + Sbjct: 206 PHEDHLFLSTRGHKLERSCVWRRIHNYAKQVTSKPVSPHSLRHAFATHLLDNKADLRVIQ 265 Query: 309 ATYGWKTVDQAETYTKGA 326 G + E YT A Sbjct: 266 EMLGHARIASTEVYTHVA 283 >gi|23465946|ref|NP_696549.1| site-specific tyrosine recombinase XerC [Bifidobacterium longum NCC2705] gi|312132551|ref|YP_003999890.1| integrase/recombinase-like protein [Bifidobacterium longum subsp. longum BBMN68] gi|23326657|gb|AAN25185.1| probable integrase/recombinase protein similar to RV2894C [Bifidobacterium longum NCC2705] gi|311773487|gb|ADQ02975.1| Integrase/recombinase-like protein [Bifidobacterium longum subsp. longum BBMN68] Length = 357 Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 49/329 (14%), Positives = 91/329 (27%), Gaps = 82/329 (24%) Query: 76 SEYRKSAHWGSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIRSGV--ESRKHTP 130 Y KS L+ N+ ++ + + G D +IT +RS + ESR H Sbjct: 14 VSYLKSNR--GLSANTLKAYRADLTACLHLFELRGVTDLNEITLDDLRSWMAVESRDHAR 71 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK------- 183 SS + ++R F WA +P ++ P + T+ +Q Sbjct: 72 SSMARKTVAVRGFFAWAYEHGVTNTDPAATLMTPSIPSTLPAVLTESQAEQLLDVAEQAV 131 Query: 184 ----------------------------------------SFWSEGSQPRLAFE------ 197 + + R+ E Sbjct: 132 ATNQYKGDGGAAAASGSGSGKAVGKTADKSADTVNRNEAPARADKRDSARVVAESQRNAA 191 Query: 198 ---FLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPD------------- 239 L +G+R ++ + + N + + + Sbjct: 192 ILELLYATGIRVAELVSMDIVDVDFSNRTIKVTGKGNKQRVVPFGLPAQRALETWLEQGR 251 Query: 240 ---GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSAT 295 A F+ +++ A +AGV + S H +R +AT Sbjct: 252 PVLARTATDAAKSRATNALFLGARGGRIDQRIARDIVHRAAREAGVPDISPHALRHSAAT 311 Query: 296 ISADAGATAHELMATYGWKTVDQAETYTK 324 D GA E+ G ++ + YT Sbjct: 312 HMLDGGADLREVQEMLGHSSLKTTQRYTH 340 >gi|313682300|ref|YP_004060038.1| tyrosine recombinase xerd subunit [Sulfuricurvum kujiense DSM 16994] gi|313155160|gb|ADR33838.1| tyrosine recombinase XerD subunit [Sulfuricurvum kujiense DSM 16994] Length = 273 Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 35/253 (13%), Positives = 80/253 (31%), Gaps = 19/253 (7%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLF 144 +L+ + ++ +I ++ I + + + + + + + L++ Sbjct: 16 KALSPRTIEAYSRDLGEI-EQNAQKALVDIDSNTVFQILGTLSNK-RTLNRKLSAFNSFL 73 Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ----FKSFWSEGSQPRLAFEFLL 200 + R + ++ K + T E +Q G + FL Sbjct: 74 DFCHRNRFDSL--STKFSLSKVPKNLPKYVTYETIQAGLGMIDRSDWIGLRDYALILFLY 131 Query: 201 YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL----PDGFMKLLAMTPIGKETFF 256 +G R S++ A ++ I+ K V + +P K + Sbjct: 132 ATGSRISEALIAEEGDIEIEWLRIRHGKGEKERYVPIAHEALKALRAYQEASPYNKPYLW 191 Query: 257 INNDKQKMNA-TQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKT 315 +N + ++ + F I K + S H +R AT GA + G + Sbjct: 192 LNYRGEPLSRISAFKITQKY------LGVSPHALRHSYATALILGGADLRVVQELLGHAS 245 Query: 316 VDQAETYTKGADR 328 + + YT + Sbjct: 246 LLTTQIYTHVQKQ 258 >gi|167813643|ref|ZP_02445323.1| prophage integrase [Burkholderia pseudomallei 91] gi|254188210|ref|ZP_04894722.1| prophage integrase [Burkholderia pseudomallei Pasteur 52237] gi|157935890|gb|EDO91560.1| prophage integrase [Burkholderia pseudomallei Pasteur 52237] Length = 376 Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 43/320 (13%), Positives = 100/320 (31%), Gaps = 23/320 (7%) Query: 18 HGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISE 77 ++ G RIR ++A S R+ R T + Sbjct: 8 KNGPWWFDLSIDGSRIRQSSGTSDRRAAEELAAKVASDYWRQKKLGERPA-VTWDAAVVH 66 Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH--------T 129 + K + S + + + + + R I + I++ +E++ Sbjct: 67 WLK----QNQHQRSLETTKQRLRWLTDQLKGENVRNIDRERIQALIETKAAEKYRGSPVA 122 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 ++ + + ++ V+ + ++ P + + + + + T+ Q+ Sbjct: 123 GATVNRHMAALSVILHHCHAEGWIDAVP--PIRKLRENSARLTWLTRAQAQRLLEELP-- 178 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQKTGTIITVELPDGFMKLL 245 + R F L +GLR S+ + K G +I+V L + + +L Sbjct: 179 THLRQMARFALATGLRESNVRLLEWAQVDRERALAWIHADQAKAGKVISVPLNEDALGVL 238 Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATA 304 + + + ++ ++ +AG+ H +R A+ AG Sbjct: 239 REQQGQHKRYVFVYKGAPIGRI-YNHAWQKACVRAGLSGLRFHDLRHTWASWHVQAGTPL 297 Query: 305 HELMATYGWKTVDQAETYTK 324 L GW + Y Sbjct: 298 PILQQLGGWASYQMVLRYAH 317 >gi|157964965|ref|YP_001499789.1| site-specific tyrosine recombinase XerC [Rickettsia massiliae MTU5] gi|166918900|sp|A8F2V6|XERC_RICM5 RecName: Full=Tyrosine recombinase xerC gi|157844741|gb|ABV85242.1| Tyrosine recombinase XerC [Rickettsia massiliae MTU5] Length = 305 Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 44/284 (15%), Positives = 109/284 (38%), Gaps = 28/284 (9%) Query: 69 TTLKWLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK 127 T+++ LI++++K + + ++ IS+ + + ++ +T HI++ Sbjct: 4 TSIQALINKWQKYLVLQRNYSNHTVISYNNDLKHFLEFMNYYNSEFVTINHIKTADIRLI 63 Query: 128 HTP-----------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176 + SS + L++++ +++ + + + S++ PK+ + ++ Sbjct: 64 RSWLAKRHCDNFTTSSISRGLSAVKNFYRFLEKTTQLNSHIIFSIKSPKKTKLLPKALSE 123 Query: 177 ED-------MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229 +D ++++ + + + + SGLR S++ HLQN F K Sbjct: 124 DDVVISLEHIEEYGNVKWVELRNKALLVLIYASGLRISEALSITKLHLQNLEFIRIIGKG 183 Query: 230 GTIITVELPD-------GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282 + ++++L E F +K+ F+ G+ Sbjct: 184 SKERIIPWLPIAKNLITQYLEILPYKLGDNEPIFRGKQGKKLQPPVFNRELIKLKHFYGL 243 Query: 283 --NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 + +AH R A+ + GA + G K++ + YTK Sbjct: 244 PQHLTAHSFRHSFASHLLEHGADLRSIQELLGHKSLSTTQNYTK 287 >gi|327398234|ref|YP_004339103.1| integrase family protein [Hippea maritima DSM 10411] gi|327180863|gb|AEA33044.1| integrase family protein [Hippea maritima DSM 10411] Length = 283 Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 43/269 (15%), Positives = 98/269 (36%), Gaps = 20/269 (7%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI----RSGVESRKHT 129 ++ +Y+ + N++ + SYF + ITT I ++S+ + Sbjct: 4 VLRQYKDLLIQKRYSQNTQDIYYSYFKDFCVYFQNEKLMNITTAQINSYILDLIKSKNIS 63 Query: 130 PSSAIQFLTSMRVLFKWAV--RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 S Q + +++ ++ + ++Y + RPK++ + + +K++++ S Sbjct: 64 ISQQNQRINAIKFYYEKVMGGEKQYYE------LHRPKKEHKLPKVLSKKEVKIIFDVTS 117 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK-TGTIITVELPDGFMKLLA 246 + + + +GLR S+ + + I G + L + L Sbjct: 118 -NLKHKCILMLIYSAGLRRSEPLNLAPTDIDSERMIIHINGAKGKKDRISLLSDNLLNLL 176 Query: 247 MTP----IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADA 300 + ++ F + T + K A KAG+ K+ H +R AT + Sbjct: 177 LKYYKEYRPQKYLFEGQKGGMYSPTSIANILKKAAIKAGIKKTVTPHMLRHSFATHLLEQ 236 Query: 301 GATAHELMATYGWKTVDQAETYTKGADRI 329 G + G ++ E YT + + Sbjct: 237 GTDLRYIQELLGHESSKTTEIYTHVSKKA 265 >gi|261226303|ref|ZP_05940584.1| site-specific recombinase [Escherichia coli O157:H7 str. FRIK2000] Length = 394 Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 46/274 (16%), Positives = 98/274 (35%), Gaps = 19/274 (6%) Query: 65 RKKPTTLKWLISEYRKSAHWGS---LAVNSRIS---FESYFDQIIRKSGDFDYRKITTKH 118 + + T+ + +Y K+ L R++ ++ + D + Sbjct: 26 KIRKMTISRALDKYLKTVSIHKKGHLQEFYRVNVIKRHPIAERYMDDITTVDIANYRDQR 85 Query: 119 IRSG--VESRKHTPSSAIQFLTSMRVLFKWA-VRQEYVAINPCLSVERPKRKTEGIRPWT 175 + R+ T ++ L + LF A V +NP V +PK + R T Sbjct: 86 LAQINPRTGRQITGNTVRLELALLSSLFNIACVEWGTCRMNPVEMVRKPKISSGRDRRLT 145 Query: 176 KEDMQQFKSFWSEGSQP-RLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQKTGTI 232 + ++ ++ E +Q + F L + +R + +H+ + + T K G Sbjct: 146 SGEERRLSRYFKEKNQALYVIFHLALETAMRQGEILSLRWEHVDLQHGVAHLPTTKNGAP 205 Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRK 291 V L L M PI +N + ++ F ++ + + N H +R Sbjct: 206 RDVPLSRKARSYLQMLPIQ-----LNGNIFSYTSSGFKSAWRTALQELKIENLHFHDLRH 260 Query: 292 FSATISADAG-ATAHELMATYGWKTVDQAETYTK 324 + + + G E+ A G ++++ + YT Sbjct: 261 EAISRFFELGTLNVIEVAAISGHRSLNMLKRYTH 294 >gi|228470660|ref|ZP_04055516.1| putative tyrosine type site-specific recombinase [Porphyromonas uenonis 60-3] gi|299143043|ref|ZP_07036164.1| integrase [Prevotella oris C735] gi|228307668|gb|EEK16647.1| putative tyrosine type site-specific recombinase [Porphyromonas uenonis 60-3] gi|298575494|gb|EFI47379.1| integrase [Prevotella oris C735] Length = 427 Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 59/318 (18%), Positives = 120/318 (37%), Gaps = 34/318 (10%) Query: 51 LTGSTPKREYINSPRKKPTTLKWL---ISEYRKSAHWGSLAVNS----RISFES--YFDQ 101 +T K Y+ R P TL L + EY++ +L+ + + S++S +F Q Sbjct: 90 ITAEYLKERYMQQSRPMP-TLTELYQSVCEYKEELQGRTLSKATVRAFKDSYKSFVHFLQ 148 Query: 102 IIRKSGDFDYRKITTKHIRS----GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINP 157 + ++ D ++ + + + SS L + + + A+++ YV +P Sbjct: 149 VRDRA-DCMPTEVDKTLLEDYRLFMLRDLGNKESSVGNRLRHLHQVIRKALQERYVREDP 207 Query: 158 CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP---RLAFEFLLYSGLRCSDSCRAGV 214 ++ + T T +D+Q+ ++ S RL F ++GL SD + + Sbjct: 208 FELID-IETPTYERNALTADDLQKLLAYRPHRSTDNHCRLIFLLGCFTGLAFSDLKKLRM 266 Query: 215 QHL-----QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIG-KETFFINNDKQKMNATQ 268 + S+ KT V L K+LA+ G +E F + + Sbjct: 267 DDVYTFGDGRRYISLCRTKTQNRSIVPLLPVAEKILAIVSHGRREGLFFREF---PSNSN 323 Query: 269 FSIWFKAKATKAGVN----KSAHGVRKFSATIS-ADAGATAHELMATYGWKTVDQAETYT 323 F+ + KAG+ ++H R AT + G + G + + E Y Sbjct: 324 FNRTIQEICIKAGLPPHTQATSHTARHTFATTICLENGLPIETVSKMLGHRFISTTEIYA 383 Query: 324 KGADRIRLGIKNSRRISS 341 + + ++ + + S Sbjct: 384 R-VTKSKIAKEMQPLMGS 400 >gi|254451305|ref|ZP_05064742.1| site-specific recombinase, phage integrase family protein [Octadecabacter antarcticus 238] gi|198265711|gb|EDY89981.1| site-specific recombinase, phage integrase family protein [Octadecabacter antarcticus 238] Length = 371 Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 48/322 (14%), Positives = 110/322 (34%), Gaps = 20/322 (6%) Query: 9 PFVTKERTRHGKIIYYFRK---GHGRRIRL-PYPHESTFIPAYMSALTGSTPKREYINSP 64 + + K +YF+K G +RI + +P S + R + Sbjct: 38 KGLVLFVGKRSKT-WYFQKDVGGQTKRILIGRFPIISAQAARQTALGFALEMGRGAGKAA 96 Query: 65 RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124 + TL+ + Y + +++ + ++ +I+ Sbjct: 97 QIGAPTLEAAMEVYLARPKLR--SETNKVGMRAQLTLHLKDWMRLPLDEISKAMTVRRHH 154 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 +PS+A L S R ++ A R + P +++E + K +G + + Sbjct: 155 DMAGSPSAANHVLRSFRAIYNHARRTGDLPECPTMAIEWFEDKPDGRIIENLKHWWKTID 214 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244 R+ +E LL++GLR ++ + + + K G + + ++ Sbjct: 215 DLPNPIH-RVFYELLLFTGLRKTEVFTLKWDQIHEDRIHLPMTKNGRSFDLPILQLHHEI 273 Query: 245 LAMT-PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGAT 303 LA P+ +E F ++ + + + + H R+ AT++ +AG Sbjct: 274 LAPLRPLSREWVF------PSPKSESGHITRPER----LKYNPHMHRRTFATVAMEAGVL 323 Query: 304 AHELMATYGWKTVDQA-ETYTK 324 + + + YT+ Sbjct: 324 EEIVGRLLNHTPLSITGQRYTR 345 >gi|315651213|ref|ZP_07904243.1| phage integrase family integrase/recombinase [Eubacterium saburreum DSM 3986] gi|315486509|gb|EFU76861.1| phage integrase family integrase/recombinase [Eubacterium saburreum DSM 3986] Length = 327 Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 40/277 (14%), Positives = 94/277 (33%), Gaps = 14/277 (5%) Query: 59 EYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH 118 E ++ T+ + + + + + S +++ + ++ + D + I T Sbjct: 37 ELTEKQKQGKTSKQNFVELFLSAKRIEGCSEKSLKYYKATIEAMLNEL-QKDVKHIVTDD 95 Query: 119 IRSGV----ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174 IR + E +K + + + F W ++Y+ +P + + K T + Sbjct: 96 IRGYLTEYQEKKKSSKVTIDNIRRILSSFFAWLEDEDYILKSPVRRIHKVKTGTNIKETY 155 Query: 175 TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT 234 + E ++ + +E + + L +G+R + + N G+ Sbjct: 156 SDEALELMRDNCTE-LRDLAIIDMLASTGMRVGEMVLLNRNDIDFNERECIVFGKGSKER 214 Query: 235 VELPDG-----FMKLLAMTPIGKETFFIN--NDKQKMNATQFSIWFKAKATKAGVNK-SA 286 V D L F++ +++ + + K G+ K Sbjct: 215 VVYFDARTKIHLQNYLNSRIDDNPALFVSLKEPHKRLKIGGIEVRLREYGKKLGLQKVHP 274 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 H R+ AT++ D G +L G + +D Y Sbjct: 275 HKFRRTLATMAIDKGMPIEQLQQLLGHRKIDTTLQYA 311 >gi|153815865|ref|ZP_01968533.1| hypothetical protein RUMTOR_02110 [Ruminococcus torques ATCC 27756] gi|145846890|gb|EDK23808.1| hypothetical protein RUMTOR_02110 [Ruminococcus torques ATCC 27756] Length = 400 Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 58/369 (15%), Positives = 117/369 (31%), Gaps = 68/369 (18%) Query: 19 GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEY 78 G+ I F G+R L + A+ + E+ + + TL + Sbjct: 20 GRYIARFTSKTGKRKTLYDFKLNELKRKLREAVY----EDEHGLNGNGESITLNAWYVTW 75 Query: 79 RKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTP---SSAI 134 + ++ + + SY++ ++ G + I T H++ + + + Sbjct: 76 TELYKKKTVKMTTIYKNHSYYNARVKNSIGKMYLQDIKTYHVQKFINELIDSGLAHGTVS 135 Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194 + +F AV EY+ NPC++VE P + + R T+E+ ++F +F S Sbjct: 136 NIRFMLSDMFDKAVLSEYIRKNPCIAVEMPPKVKKERRVLTREEQKKFFTFASSYIHI-N 194 Query: 195 AFEFLLYSGLRCSDSCRAGVQH----------------------LQNNIFSIKTQKT-GT 231 +F + +G R + + ++ + F T KT + Sbjct: 195 VLKFAVTTGCRIGEVLGLKWEDCDFEKREITINKTIHYSKASSPVEGSKFFYTTAKTISS 254 Query: 232 IITVELPDGFMKLLAMTPIGK------------------ETFFINNDKQKMNATQFSIWF 273 + + D ++L I + F +D + + Sbjct: 255 NRVIPMTDEVYEILQNQKIKQTEQKMWKRSIWKQHKEFQNLVFTCSDGSPVYYYNVNSAI 314 Query: 274 KAKATK--------AGVNK---------SAHGVRKFSATISADAGATAHELMATYGWKTV 316 K K A K + H +R AT + G + G T+ Sbjct: 315 KDYVAKINVIEIELAKEEKREPKIFELFTCHTLRHTYATRCYENGVDQQVVQKLLGHSTL 374 Query: 317 DQ-AETYTK 324 + YT Sbjct: 375 AMTTDLYTH 383 >gi|326407821|gb|ADZ64892.1| integrase [Lactococcus lactis subsp. lactis CV56] Length = 378 Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 46/293 (15%), Positives = 104/293 (35%), Gaps = 39/293 (13%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129 T++ + +++K L ++ + F+ +++ G+ D ++I I+S + + + + Sbjct: 68 TIQEVFDDWQKIRK-EELKPSTFHVGKMAFNTFLKRFGEMDIKEINPDQIQSFLFNSQLS 126 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK-------RKTEGIRPWTKEDMQQF 182 PS+ S +LF +A Y+ NP V PK K + + E+M+ Sbjct: 127 PSTRSLRKNSFNLLFTYAKNVGYIEANPVERVVLPKEKNTIEELKKKQNKFLNLEEMRII 186 Query: 183 KSFWSEGSQP---RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI----------KTQKT 229 + L +EFL +GLR + + + ++ ++K Sbjct: 187 LEKNKPIEKDIRKLLIYEFLFLTGLRIGEVQALRWEDVDFEKKTLAVTHTLNHQGTSEKN 246 Query: 230 GTII---------TVELPDGFMKLL---AMTPIGKETFFINNDKQKMNATQFSIWFKAKA 277 ++ T+ + D +++L + F+N + + FK Sbjct: 247 RQLLSPKTINSYRTISINDRCLEILNYFYSHLTDELFIFVNKHGDTYCYSILARHFKKVC 306 Query: 278 TKAG-----VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324 G + H +R ++ + G +M G + Y+ Sbjct: 307 QVLGEETSQRKYTLHMLRHSHISLLIEIGIPIKTIMERVGHSNEQMILQIYSH 359 >gi|325299603|ref|YP_004259520.1| Tyrosine recombinase xerC [Bacteroides salanitronis DSM 18170] gi|324319156|gb|ADY37047.1| Tyrosine recombinase xerC [Bacteroides salanitronis DSM 18170] Length = 292 Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 41/266 (15%), Positives = 92/266 (34%), Gaps = 23/266 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIRSG---VES 125 L + K + + + + +S+ D+ + IR + Sbjct: 2 LKESFLKYLQFEKNYSEKTVVSYGIDLSGFEAYFKAVDETLDFATVDADVIRGWVVSLMD 61 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + SS + L+S+R +++ +R++ V+++P V PK+K + DM + Sbjct: 62 EGYAASSVNRKLSSLRSFYRYLLREKVVSVDPVRKVTGPKKKKPLPVFVKEADMDRLLDA 121 Query: 186 WS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDG 240 E + + +G+R S+ ++ + +IK T K + + Sbjct: 122 ECGTDFESVRNKAIVAVFYETGIRLSELIGLKDANVDFSAGTIKVTGKRNKQRVIPFGEE 181 Query: 241 FMKLLAMT--------PIGKETFFINNDKQKMNATQFSIWFKA--KATKAGVNKSAHGVR 290 +L + E FF+ + + M + + A +S H +R Sbjct: 182 LENILQVYLSARNEYCHTECEAFFVRKEGKAMYPGMVYLLVRQNLSRVVALKKRSPHVLR 241 Query: 291 KFSATISADAGATAHELMATYGWKTV 316 AT + A + G +++ Sbjct: 242 HSFATAMLNNQAGLEAVKELLGHESL 267 >gi|320352532|ref|YP_004193871.1| integrase family protein [Desulfobulbus propionicus DSM 2032] gi|320121034|gb|ADW16580.1| integrase family protein [Desulfobulbus propionicus DSM 2032] Length = 357 Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 56/334 (16%), Positives = 112/334 (33%), Gaps = 32/334 (9%) Query: 26 RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWG 85 R +G+R R +F+ + L S + I + L +EY + A Sbjct: 19 RIVNGKRQR------KSFLTKKEALLWESEQLPDEIAEQKTHSVCLLDWATEYLRHAE-Q 71 Query: 86 SLAVNSRISFESYFDQIIRKSG---DFDYRKITTKHIRSGVESRKHTPS--SAIQFLTSM 140 + + F Q SG ++T ++ ++ + + S +A + ++ Sbjct: 72 NFTGKTFDEKRMAFRQFFAYSGINPKESANRLTALQVQKALQRQSISRSGNAANKDRKNL 131 Query: 141 RVLFKWAVR-QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFL 199 + W V+ + + NP VE+ + T +D + Q +L Sbjct: 132 SAAWSWGVKFLQLPSENPFSKVEKFASERFERYVPTLDDFWKVFHSL-VQDQDKLMLYCY 190 Query: 200 LYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGT----IITVELPDGFMKLLAMTPIG-- 251 L +G R + R + + +K + + D + L G Sbjct: 191 LQTGARRDELFRLTWADVDFFRKRIRLSWRKNKVGEWRSQWLSIKDDLAEWLLRHKKGNS 250 Query: 252 --KETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELM 308 KE F++ + + W K +AGV HG+R A+I A E+ Sbjct: 251 DLKEHVFVS--YRSLAYQYRQHWLKKVCKEAGVKPFGFHGIRHLFASILAAQNVPLVEIQ 308 Query: 309 ATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342 ++ + Y RL +N ++++ Sbjct: 309 YMLRHTSLATTQRYIH-----RLKKENREVLAAL 337 >gi|153009174|ref|YP_001370389.1| phage integrase family protein [Ochrobactrum anthropi ATCC 49188] gi|151561062|gb|ABS14560.1| phage integrase family protein [Ochrobactrum anthropi ATCC 49188] Length = 426 Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 56/303 (18%), Positives = 94/303 (31%), Gaps = 38/303 (12%) Query: 59 EYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTK 117 E + RK L L+ E+ K + + + ++ ++ K G +T Sbjct: 94 ERVERQRKSSDILTDLVDEFLKKHAAQN---KTHDETKRILERELLSKHGKKSIHVVTKH 150 Query: 118 HIRSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175 I S +E + P A + L ++R W V ++ +AI+P + P R+ R T Sbjct: 151 DILSVLEGIRDRGAPYMANRVLAAIRKFMNWCVSRDIIAISPANGISLPTREVSRDRVLT 210 Query: 176 KED-MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK----TQKTG 230 ++ + S G E L + R + L + + K G Sbjct: 211 ADETRAALMAAKSVGYPYGNIVELLFLTAQRRDEVGDMRWSELNLDKATWTIPAERVKNG 270 Query: 231 TIITVELPDGFMKLLAMTP-------IGKETFFINNDKQKMNATQFSI---------WFK 274 V L + LL P + + F + S + Sbjct: 271 KAHDVHLSKDALALLHSIPRFVSADNVESDLVFTTTGNTPFSGYSKSKTTLDKKMLEVLQ 330 Query: 275 AKATKAGVN--------KSAHGVRKFSATISADAGATAHELMATYGWKTV---DQAETYT 323 A GVN H +R+ T + G H A K+ A Y Sbjct: 331 KMAEDKGVNPELVKLTPWRLHDIRRTVTTELSKLGVAIHVADAILNHKSGVISGVAAVYQ 390 Query: 324 KGA 326 K A Sbjct: 391 KNA 393 >gi|39933583|ref|NP_945859.1| tyrosine recombinase XerD [Rhodopseudomonas palustris CGA009] gi|39647429|emb|CAE25950.1| site-specific integrase/recombinase XerD [Rhodopseudomonas palustris CGA009] Length = 338 Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 45/279 (16%), Positives = 90/279 (32%), Gaps = 31/279 (11%) Query: 80 KSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139 SA+ + + G D + + + +++R SS + L++ Sbjct: 47 ASANTLDAYRRDLADLSHFLSRRRLSIGSADTAAL--RSYLADLDNRGFATSSVARRLSA 104 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS-------FWSEGSQP 192 +R LF++ + + A +P + PKR + + D+ Q + G++ Sbjct: 105 LRHLFRFLLSERIRADDPAAILAGPKRGRSLPKVLSIADVDQLLACARQEIDAAEGGARL 164 Query: 193 RLA-----FEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVEL--------- 237 R A E L +GLR S+ + + + + K V L Sbjct: 165 RAARLNCLLEVLYATGLRVSELVSLPLSAARRDARMIVVRGKGDKERLVPLNAGAKQAMA 224 Query: 238 --PDGFMKLLAMTPIGKETFFINNDKQK--MNATQFSIWFKAKATKAGVN---KSAHGVR 290 + A + + + + F+ K A +AG+ S H +R Sbjct: 225 RYLEEMAAAKAPKDGPAPKWLFPSFGESGYLTRQHFARDLKDLAARAGLAPRLVSPHVLR 284 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 A+ GA + G + + YT + Sbjct: 285 HAFASHLLHNGADLRIVQTLLGHSDISTTQIYTHVVEER 323 >gi|15604648|ref|NP_221166.1| site-specific tyrosine recombinase XerC [Rickettsia prowazekii str. Madrid E] gi|34223090|sp|Q9ZCE0|XERC_RICPR RecName: Full=Tyrosine recombinase xerC gi|3861343|emb|CAA15242.1| PROBABLE INTEGRASE/RECOMBINASE RIPX (xerC) [Rickettsia prowazekii] gi|292572467|gb|ADE30382.1| Tyrosine recombinase XerC [Rickettsia prowazekii Rp22] Length = 305 Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 47/283 (16%), Positives = 109/283 (38%), Gaps = 28/283 (9%) Query: 70 TLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI--------R 120 +++ LI +++K + + N+ I++ + + ++ +T HI R Sbjct: 5 SIQELIKQWQKYLILQKNYSNNTVIAYNNDLKHFLEFMNYYNSELVTLNHIKTADIRLIR 64 Query: 121 SGVESRK---HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177 S + RK T SS + L++++ +K+ + + + S++ PK+ + + + Sbjct: 65 SWLAKRKCENFTASSIARGLSTVKNFYKFLEKTLLLNNHIIFSIKSPKKAKLLPKGLSVD 124 Query: 178 D-------MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230 D ++++ + + + + +GLR S++ HLQN F K Sbjct: 125 DVLISLEHIEEYGNVKWVELRNKALIVLIYAAGLRISEALSITKLHLQNLEFIKIIGKGS 184 Query: 231 TIITVELPD-------GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283 + ++++L E F +K+ + F+ G+ Sbjct: 185 KERIIPWLPLTKNLITKYLEILPYKLDENEPIFRGRQGKKLQPSVFNRELIKLKRIYGLP 244 Query: 284 --KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 +AH R A+ + GA + G K++ + YT+ Sbjct: 245 EYLTAHSFRHSFASHLLEYGADLRSIQELLGHKSLSTTQKYTQ 287 >gi|84501636|ref|ZP_00999808.1| tyrosine recombinase [Oceanicola batsensis HTCC2597] gi|84390257|gb|EAQ02816.1| tyrosine recombinase [Oceanicola batsensis HTCC2597] Length = 310 Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 42/274 (15%), Positives = 90/274 (32%), Gaps = 28/274 (10%) Query: 85 GSLAVNSRISFESYF--------DQIIRKSGDFDYRKITTKHIRSGVESRKH---TPSSA 133 + + ++ + + G ++TT +R+ + + S Sbjct: 24 RGASEATIGAYRRDLVDYLSFMTEHLGGPQGIAALGRVTTSDMRAWMARERGAGLGARSL 83 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF-------KSFW 186 + L++++ ++W +E + + P LS P+ + RP ++ + + Sbjct: 84 ARKLSAVKTFYRWLAEREGLEVTPVLSARAPRYQRSLPRPLAEDAARAMIETVGSSDTRP 143 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP-------D 239 ++ L GLR S++ V L K G V L + Sbjct: 144 WVAARDAAVVTLLYGCGLRISEALSLTVDDLPLGDSLRIRGKGGKERIVPLIAPARQAVE 203 Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATIS 297 +++++ F ++A + G+ +A H +R AT Sbjct: 204 AYLEIMPHPVTSGAPLFRAIRGGALSARTVQKSMERARMGLGLPATATPHAMRHSFATHL 263 Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 AG + G ++ + YT G D RL Sbjct: 264 LSAGGDLRSIQDLLGHASLSTTQVYT-GVDTARL 296 >gi|326800846|ref|YP_004318665.1| integrase family protein [Sphingobacterium sp. 21] gi|326551610|gb|ADZ79995.1| integrase family protein [Sphingobacterium sp. 21] Length = 392 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 51/264 (19%), Positives = 96/264 (36%), Gaps = 25/264 (9%) Query: 88 AVNSRISFESYFDQIIRKSGD--FDYRKITTKHIR---SGVESRKHTPSSAIQFLTSMRV 142 + + + + Q I G + +IT + IR + + + ++ + +R Sbjct: 131 SNQTWRNQRNCLRQFIDFWGSPLIPFHEITQEKIREYDAYLRKLDKSHNTITGYHKVIRK 190 Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFL--- 199 A +Q + +NP + + RP + ++++ + + E L Sbjct: 191 FLNAAEKQNIIKVNPYNGLT-FRYVPGSRRPLEQVELKRLMDIYYKKPLMHSVREVLRRF 249 Query: 200 ---LYSGLRCSDSCRAGVQHLQNNIFSIKTQKT---GTIITVELPDGFMKLLAMTPIGKE 253 +G+R SDS R + N + K +KT G T+ LP + L+ G+E Sbjct: 250 LFSCLTGVRISDSHRLHRNMIVGNKLTFKMKKTERYGRTATIPLPKAALDLVE----GQE 305 Query: 254 TFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATY 311 + K + + K A AG+ K + H R TI + G L Sbjct: 306 GYLFT----KFADKTINEYLKVIAVIAGIEKNLTYHCARDTFGTIFIELGGDIKSLCDIM 361 Query: 312 GWKTVDQAETYTKGADRIRLGIKN 335 G E Y K +D+ + + N Sbjct: 362 GHSDTRITEIYLKMSDQRKQNLMN 385 >gi|296100765|ref|YP_003610911.1| putative integrase [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295055224|gb|ADF59962.1| putative integrase [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 398 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 59/291 (20%), Positives = 115/291 (39%), Gaps = 21/291 (7%) Query: 48 MSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISF----ESYFDQII 103 S TG+ PK+E N ++ T L ++ H+ A +++ S+ + Y D I Sbjct: 87 RSLATGTDPKQEREN--KRMELTFDELFNQ-----HYLPWAKSAKRSWGKDVQRYRDHIR 139 Query: 104 RKSGDFDYRKITTKHIRSGVESRKHTPSSA--IQFLTSMRVLFKWAVRQEYVAINPCLSV 161 G IT I ++ + S+A + + ++ +F WA RQ +++P V Sbjct: 140 PAIGQRLLSDITPASILRLQQTLSTSLSAATCNRVIVLIKAVFTWAGRQSMTSVHPARVV 199 Query: 162 ERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF--EFLLYSGLRCSDSCRAGVQHLQ- 218 + + R +T++++++ + P A + LL +GLR + A +H+ Sbjct: 200 QLLRENNARQRYFTEDEIRRIFLSADNDTSPVAARYVKLLLLTGLRRDELRLAKWEHVDP 259 Query: 219 -NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGK-ETFFINNDKQKMNATQFSIWFKAK 276 + K G V L M ++ P + + KQ M + F+ Sbjct: 260 VKRTLWLPETKNGYGRIVHLNSLAMDVIRTLPTQRGNPWLFIGKKQGMPLSNPVKAFQRI 319 Query: 277 ATKAGV---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 +AG+ H R A + G T +++ A G ++ ++ Y Sbjct: 320 VRRAGIFDKEVCIHTCRHSVAALIVSYGGTLYDVQAQLGHRSSQSSQRYAH 370 >gi|288959341|ref|YP_003449682.1| integrase/recombinase [Azospirillum sp. B510] gi|288911649|dbj|BAI73138.1| integrase/recombinase [Azospirillum sp. B510] Length = 321 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 41/244 (16%), Positives = 79/244 (32%), Gaps = 21/244 (8%) Query: 110 DYRKITTKHIRSGVESRK---HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS-VERPK 165 D + R+ + +S + L ++R LF+W + + NP ++ + PK Sbjct: 68 DLGDLKAADFRAWMSRLAMDGLVGASRARKLAAVRNLFRW-MDRGGRLHNPAVATLATPK 126 Query: 166 RKTEGIRPWTKEDMQQFKSFWS-------EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ 218 K RP T+ D + G + R F L GLR S++ + Sbjct: 127 VKRPAPRPLTEIDADRLLEEAEREREEPWIGKRDRALFTLLYGCGLRISEALGLAARDAP 186 Query: 219 NNIFSIKTQKTGTIITVELPDGFMKLLAM-------TPIGKETFFINNDKQKMNATQFSI 271 T K + + + + T F+ ++NA+ Sbjct: 187 LGDTLRVTGKGRKDRMIPILPAVTEAVRAYLDSCPFTLAPDGPLFVGTRGGRLNASIAQH 246 Query: 272 WFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 + G+ N + H +R AT G + G ++ + YT + Sbjct: 247 QMQKLRALMGMPDNATPHALRHSFATHLLADGGDLRAIQDLLGHASLSTTQRYTDVENEQ 306 Query: 330 RLGI 333 + + Sbjct: 307 LMNV 310 >gi|94972399|ref|YP_595617.1| integrase/recombinase [Lawsonia intracellularis PHE/MN1-00] gi|94731936|emb|CAJ53953.1| similar to integrase/recombinase [Lawsonia intracellularis PHE/MN1-00] Length = 361 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 38/269 (14%), Positives = 93/269 (34%), Gaps = 30/269 (11%) Query: 88 AVNSRISFESYFDQIIRKSGDFDYRKITTKH---IRSGVESRKHTPSSAIQFLTSMRVLF 144 + + + Y +I D+ IT++ + P++ + +++ F Sbjct: 83 SFATMELYARYITDLINYV-QKDFHHITSQDVDAFIRYRQLNGSKPATINTIIGALKSFF 141 Query: 145 KWAVRQEYVAINPCLSVERPKRKTE------GIRPWTKEDMQQ-FKSFWSEGS--QPRLA 195 + V + +NP +++ + T+ ++ ++Q+ F +G+ + + Sbjct: 142 RHLVDAGILTLNPTAFLKKRRNDTKQNLPGHLSHSLSESELQRLFDGMIEQGASLRDQAL 201 Query: 196 FEFLLYSGLRCSDSCRAGVQHL---QNNIFSIKTQKTGTIITVELPDG----------FM 242 + L +G+R ++ R H+ Q+ + K V LP + Sbjct: 202 MQVLFLTGIRAEEAVRLKWSHIVTWQSRWYLDVFGKGSKRRRVYLPIQALTVIQEYGKLL 261 Query: 243 KLLAMTPIGKETFF--INNDKQKMNATQFSIWFKAKATK--AGVNKSAHGVRKFSATISA 298 + + F + + ++ + K + + S H R T A Sbjct: 262 GIELGLASNSKPLFAHLRRPNEHISRHGLYVLVKKWCKRLLGRTDVSPHWFRHSCFTQLA 321 Query: 299 DAGATAHELMATYGWKTVDQAETYTKGAD 327 GA+ + A G ++V+ Y + A Sbjct: 322 HKGASLESIKALAGHESVETTMQYNEAAQ 350 >gi|28895789|ref|NP_802139.1| integrase (phage associated) [Streptococcus pyogenes SSI-1] gi|28811038|dbj|BAC63972.1| putative integrase (phage associated) [Streptococcus pyogenes SSI-1] Length = 303 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 47/280 (16%), Positives = 88/280 (31%), Gaps = 26/280 (9%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129 T L ++ K + + I+ K I I+ E + Sbjct: 2 TFGALTDQWLKEYEKTVQCSTYLKTERNINKHILPKLDKVKIGDINPLLIQRLTEEWCND 61 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG---IRPWTKEDMQQFKSFW 186 + L +R + AVR Y+ NP L + PK K + +T + ++QF Sbjct: 62 LKYGGKILGLVRNILNLAVRYGYINNNPALPITPPKIKRKRKMNNNFYTLDQLKQFLELV 121 Query: 187 SEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL------- 237 + F L ++G+R + L N SI T T + +E+ Sbjct: 122 EKTDNIEKIALFRLLAFTGIRKGELLALTWDDLNGNTLSINKAVTRTQVGLEIDVTKTKS 181 Query: 238 -----------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-S 285 + ++L P F + M + W + + + Sbjct: 182 SDRLISLDDETLEILLELHETFPTSTLMF-QSESGGIMTPSLPRKWLLQIIKGTDLPQIT 240 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTK 324 HG R A++ ++G + ++ G + YT Sbjct: 241 IHGFRHTHASLLFESGLSLKQVQHRLGHGDLQTTMNVYTH 280 >gi|15891311|ref|NP_356983.1| site-specific tyrosine recombinase XerD [Agrobacterium tumefaciens str. C58] gi|34222927|sp|Q8U9U6|XERD_AGRT5 RecName: Full=Tyrosine recombinase xerD gi|15159692|gb|AAK89768.1| site-specific recombinase [Agrobacterium tumefaciens str. C58] Length = 331 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 44/283 (15%), Positives = 94/283 (33%), Gaps = 43/283 (15%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDF-----DYRKITTKHIRSGVESRKHTPSSAIQFLTS 139 A N+ S+E + G + + + + ++ +S + L+S Sbjct: 25 RGAAANTLSSYEHDLADLREFLGRRGQSLTEAQTPDLSAYLTHLAAQGFAATSQARRLSS 84 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS--------- 190 MR +++ + +P ++ P++ + + D+ + ++ + Sbjct: 85 MRQFYRFLYSEGLRGDDPTGIIDAPRKGLALPKTMSVADVNRLLGLAAQEAATEGPGQLA 144 Query: 191 --QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLLAM 247 + L E L +G+R S+ V+ L+ F + K V L ++ + Sbjct: 145 RIRMHLLLELLYATGMRVSELVSLPVKVLRQEGRFLMIRGKGNKDRMVLLSRAAIEAMEK 204 Query: 248 TPIGKETF----------------------FINNDK-QKMNATQFSIWFKAKATKAGVNK 284 G++ F +N K + F+ K A +AG+ Sbjct: 205 YEAGRKALSQEKSKAAASQKKTDTAESPWLFPSNSKEGHLPRQVFARDLKDIAIRAGLTA 264 Query: 285 SA---HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 SA H +R A+ GA + G + + YT Sbjct: 265 SAVSPHVLRHAFASHLLQNGADLRAVQELLGHSDISTTQIYTH 307 >gi|296171500|ref|ZP_06852764.1| integrase/recombinase XerD [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295894062|gb|EFG73823.1| integrase/recombinase XerD [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 298 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 37/267 (13%), Positives = 82/267 (30%), Gaps = 26/267 (9%) Query: 86 SLAVNSRISFESYFDQIIRKSGDFD-----YRKITTKHIRSGVESRKHTPSSAIQFLTSM 140 + ++R ++ ++ D + S + ++ + +++ Sbjct: 17 GRSAHTRRAYLGDLRSLLTFLADRGAGLDGLSLPLLRSWLSAGAAAGAARTTLARRTSAV 76 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED-MQQFKSF-------WSEGSQP 192 + WA R+ +A +P ++ PK ++ + + + Sbjct: 77 KAFTAWAARRGLLAADPGARLQVPKAHRTLPAVLRQDQALDAMAAAKSGAQQGDPMALRD 136 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAM---- 247 RL E L +G+R S+ C V + ++ K TV L Sbjct: 137 RLIVEMLYATGIRVSELCGLDVDDVDTGHRLVRVLGKGNKQRTVPFGMPAADALRAWLDD 196 Query: 248 ------TPIGKETFFINNDKQKMNATQFSIWFKAK--ATKAGVNKSAHGVRKFSATISAD 299 T + ++++ Q A + HG+R +AT + Sbjct: 197 GRPALVTAESGPALLLGARGRRLDVRQARTVVHQTVSAVDGAPDMGPHGLRHSAATHLLE 256 Query: 300 AGATAHELMATYGWKTVDQAETYTKGA 326 GA + G ++ + YT A Sbjct: 257 GGADLRVVQELLGHSSLATTQLYTHVA 283 >gi|307592267|ref|YP_003899858.1| integrase family protein [Cyanothece sp. PCC 7822] gi|306985912|gb|ADN17792.1| integrase family protein [Cyanothece sp. PCC 7822] Length = 338 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 46/296 (15%), Positives = 88/296 (29%), Gaps = 53/296 (17%) Query: 88 AVNSRISFESYFDQI-----IRKSGDFDYRKITTKHIRSGVES-RKHTPSSAIQFLTSMR 141 A ++ ++ + Q I+ + T R + +K+ P+S LT +R Sbjct: 30 ADDTLKTYSAALKQFLTWCKIKAISPMCATEGTICSYRQYLLKTKKYKPASVALKLTVVR 89 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIR---PWTKEDMQQFKSFWS-----EGSQPR 193 + A +Q ++A NP V+ P + + + +Q + R Sbjct: 90 RFYTMATKQGFIAANPATDVKPPTQSYDPATHNNYLDLTEAKQLIESLPNDDSLPSLRDR 149 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDGFMKLLAM---- 247 E +++ G R + R V + +N + Q + V L +LL Sbjct: 150 ALIEIMVWQGCRTVELYRLNVGDIIKRNEDLGLNVQGKRSRRIVPLTPDLAQLLQKYLKA 209 Query: 248 ---------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAG----------------- 281 T N ++ + G Sbjct: 210 RKKAGEILKADTPLFTSLTRNKGSRLTRRSIARIVDKYLKINGWKNNNLDEHQVDHDDFD 269 Query: 282 -------VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 SAH +R T++ AG + ++ G + + Y DR R Sbjct: 270 DLFICSPRKLSAHSLRHTCGTLALWAGVSLRQVQDLLGHRDPETTALYAHAGDRWR 325 >gi|228960186|ref|ZP_04121843.1| Prophage LambdaBa02, site-specific recombinase, phage integrase [Bacillus thuringiensis serovar pakistani str. T13001] gi|228799454|gb|EEM46414.1| Prophage LambdaBa02, site-specific recombinase, phage integrase [Bacillus thuringiensis serovar pakistani str. T13001] Length = 376 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 44/293 (15%), Positives = 96/293 (32%), Gaps = 28/293 (9%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHT 129 L+ + + S ++ ++ +++ + G+ I + + + Sbjct: 63 FSQLVEIWMQEKE-SSCRPSTLYQYKRILRSRVMPEFGEKRLSDIKPLTVHNFHQKLLKE 121 Query: 130 PSSAIQFLTS---MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + + ++ + V E + NP +RPK K + WT E+ +F + Sbjct: 122 GLTTKYISSVDVMLKQILDKGVELEMINSNPAKKAKRPKVKKKAQASWTVEEAMKFMEYA 181 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT------------ 234 +AF L++G+R + + +I Q+T T++ Sbjct: 182 KIQGSYYIAFVLALHTGMRIGEVLALQWDDINFENKTIHVQRTLTLVDGKYELGETKTEA 241 Query: 235 ----VELPDGFMKLLAMTPIGK-----ETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284 + + + M L K + +K+ ++ KA V Sbjct: 242 SNRIIPMTEELMGELLEYQSHKKENSFDLLICTRNKKIVHPYTIRYQMKALCEAIDVPYI 301 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNS 336 H +R+ TI D+GA A + G V YT + ++ + Sbjct: 302 RFHDIRRTFTTILIDSGANAKVVSKLLGHTNVSTTLNIYTDVYEERQIEVTEM 354 >gi|228961482|ref|ZP_04123093.1| DNA integration/recombination/invertion protein [Bacillus thuringiensis serovar pakistani str. T13001] gi|228798196|gb|EEM45198.1| DNA integration/recombination/invertion protein [Bacillus thuringiensis serovar pakistani str. T13001] Length = 367 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 47/294 (15%), Positives = 101/294 (34%), Gaps = 44/294 (14%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVE----S 125 I +Y K+ +L + ++ D II G+ I T H+ + + Sbjct: 56 FAEWIQKYAKT----NLQKTTLFNYIHILDTHIIPVLGNKKVEDIKTIHLVTLFHGKLPA 111 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + ++ T +++LFK A ++ NP V + K K + ++P+ ++++ + + Sbjct: 112 KGLATTTINSIHTRVKMLFKKACEWGFIKKNPMDGVSKLKNKRQELQPYDQKEIVKILAL 171 Query: 186 WS-EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ---------------NNIFSIKTQKT 229 E ++ F+ + +G+R + H+ +K KT Sbjct: 172 TEQEKDMNKMLFQLAIVTGMRRGELLGLEWGHIDFQNDMVHIQQTIVRAGKEILLKEPKT 231 Query: 230 -GTIITVELPDGFMKLLAMTPI--------------GKETFFINN--DKQKMNATQFSIW 272 + + +P F L G+E F+ + + + + + S Sbjct: 232 SKSKRIISIPPTFTTKLKQYKKYCAEKRIACGDLWEGEEHLFLFSTWNGRPLTPEKASTR 291 Query: 273 FKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTK 324 ++ K G+ HG+R AT G + G + Y Sbjct: 292 WQYFTQKHGLRHIKLHGLRSTHATYLLTQGENLKVISERLGHSDIQTTMNIYAH 345 >gi|239828404|ref|YP_002951028.1| integrase [Geobacillus sp. WCH70] gi|239808697|gb|ACS25762.1| integrase family protein [Geobacillus sp. WCH70] Length = 301 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 38/302 (12%), Positives = 99/302 (32%), Gaps = 36/302 (11%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFE----SYFDQIIRKSGDFDYRKITTKHIRSGVESRK 127 + I + + + + + S+ + + ++ G+ + ++ + K Sbjct: 2 QQFIDPFVRYLYEEAKDKKTIASYRTTVAHFLEWYEQREGNIIIEETRPVDVKEYISYLK 61 Query: 128 H----TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK---RKTEGIRPW-TKEDM 179 H P++ +++ +++V F + V NP ++ K + W TKE+ Sbjct: 62 HQCKRKPATINKYIAALKVFFSYLTEVGLVKDNPMTRIKTEKIEYAQGSSQTKWLTKEEQ 121 Query: 180 QQFKSFWSE------GSQPRLAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKT 229 ++F S+ + + ++Y+GLR ++ + + + ++ K Sbjct: 122 ERFISYVELEKNEFKRLRNLAIIDLMIYAGLRVNEVASLELSDIQVKGNDVEIIVRQGKG 181 Query: 230 GTIITVEL-----------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKAT 278 +V L L T + F++ + A Sbjct: 182 NKYASVLLVQKYSRNLRKWLKYRQNLEKSTHKESQRLFVSERSMFLTERAIQKMLTKYAD 241 Query: 279 KAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 A + N + H R A+AG + +++ Y + ++ R Sbjct: 242 LANMKNITPHRFRHSFCKNLANAGTPIEIIRRLARHESIQTTAIYVDAS--KEEQVQALR 299 Query: 338 RI 339 ++ Sbjct: 300 KM 301 >gi|160875127|ref|YP_001554443.1| integrase family protein [Shewanella baltica OS195] gi|160875848|ref|YP_001555164.1| integrase family protein [Shewanella baltica OS195] gi|160860649|gb|ABX49183.1| integrase family protein [Shewanella baltica OS195] gi|160861370|gb|ABX49904.1| integrase family protein [Shewanella baltica OS195] gi|315267318|gb|ADT94171.1| integrase family protein [Shewanella baltica OS678] Length = 287 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 41/267 (15%), Positives = 88/267 (32%), Gaps = 21/267 (7%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE----SRK 127 L+ ++ + +R ++ Q+ + + + IT + + + R Sbjct: 2 SSLLQQFHDEISLRGYSARTRNAYLYAITQL-QHYANQPFDNITDEQLTAYFRYLNLERH 60 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 H+ ++ L + ++ + +++ + + PKR + + + +D+ Sbjct: 61 HSRATLKLQLNGIHFFYEHVLGRDF-----TVQLSLPKRPHKLPQLLSCQDIAALL-CHC 114 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLL 245 + + R GLR S+ V + +K K V + + LL Sbjct: 115 QNLKQRAMLALCYGCGLRVSELTHIKVADIDGQRQLLKVCQGKGAYDRLVIISPTLLTLL 174 Query: 246 A---MTPIGKETFFINNDK---QKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATIS 297 E F + ++ + F A A + S H +R AT Sbjct: 175 RQYWRAYHPVEWLFASTYHDVVYPLHESTFRKALAKAARLASITKPCSPHSLRHAYATHQ 234 Query: 298 ADAGATAHELMATYGWKTVDQAETYTK 324 AG H+L A G ++ E Y Sbjct: 235 LQAGMPLHQLQAQLGHHSIKSTERYLH 261 >gi|299529229|ref|ZP_07042673.1| phage-related integrase [Comamonas testosteroni S44] gi|298722753|gb|EFI63666.1| phage-related integrase [Comamonas testosteroni S44] Length = 340 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 56/352 (15%), Positives = 110/352 (31%), Gaps = 46/352 (13%) Query: 9 PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68 P + + G YYF G R +P + Y A+ P + Sbjct: 2 PNFRARKQKSGTTYYYFDTGAKPRKEIPLGSD------YRVAVQKWLELSAMPARPVSE- 54 Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD---FDYRKITTKHIRSGVES 125 L +Y A +++ + ++ + I KHI ++ Sbjct: 55 -NFAELADKYEAEVIPLK-AKSTQATQLGDLKKLRTFFCNPTPAPLNAIKPKHIYLLLQW 112 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVA-INPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 K TP++A + +F A + NPC +E + +++ ++ Sbjct: 113 AKDTPTTANRLKRVFSHMFNMARAWGWTENENPCTGIEGHSLGKR--EVYISDEV--YRL 168 Query: 185 FWSEGSQP-RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243 + G+ + A + +G R D+ + + IK KT + + Sbjct: 169 VYEHGNVALKDAMDLAYLTGQRPGDTLSLTDHDIIDGYLVIKQSKTSAALRFIIEGELNA 228 Query: 244 LLAMTPIGKET-------FFINNDKQKMNATQFSIWFKAKATKAG--VNKS--------- 285 LL K + ++ + M+ F+ + A +KS Sbjct: 229 LLDRIEERKRSHKTWSANLLVSQYGKAMSKQMLRKAFETARSDAADEADKSGNAALAAQI 288 Query: 286 ----AHGVRKFSATISADAGATAHELMA--TYGWKTVDQAE-TYTKGADRIR 330 + +R +A AD EL A G +V + Y + R++ Sbjct: 289 RAFWFYDLRAKAADDVADERG---ELAASKQLGHTSVQTTKRHYLRRGTRVQ 337 >gi|297620912|ref|YP_003709049.1| putative integrase [Waddlia chondrophila WSU 86-1044] gi|297376213|gb|ADI38043.1| putative integrase [Waddlia chondrophila WSU 86-1044] Length = 367 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 63/351 (17%), Positives = 124/351 (35%), Gaps = 42/351 (11%) Query: 24 YFRKGHGRRIRLPY-PHESTFIPAYMSALTGSTPKREYINSPRKKPTT------LKWLIS 76 Y+R +IRL PH S ++ A I S + TT L LI Sbjct: 22 YYRV----QIRLKGCPHISKNFDSFQKAKDWKRKTIAAIQSGQPYETTEMRRLTLSDLID 77 Query: 77 EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP------ 130 + S L + + + + + + G ++ I + K P Sbjct: 78 RFISSDL---LKLRNHKTIKGHLSWWKDEIGYCILSQLREDIIAQARDKLKEQPDKWGRS 134 Query: 131 ---SSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 ++ ++L S+ + AVR+ + +P +V + R +KE+ +Q Sbjct: 135 RSSATVNRYLCSLGSVINLAVREWRLLPYSPLKNVRKLPEPRGRERFLSKEEKKQLLLAC 194 Query: 187 SEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFM 242 S L L +G+R + +H+ N +++ K V +PD + Sbjct: 195 QNSSCKLLYPIVLLALSTGMRKGEILNLKWKHVDLTNGSVTLEHTKNNDRRVVPVPDISL 254 Query: 243 KLLAMTPIGKETF------FINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSAT 295 +L F ++ + K+ N F +KA +A + + H +R T Sbjct: 255 NILKSLRAHCAHFGELTDEYVFSQKKGHNPIDFRASWKAALKQAKIKDFKFHDLRHDFIT 314 Query: 296 ISADAGATAHELMATYGWKTVD-QAETYTKGADRIRLGIKNSRRISSVVDS 345 ++ H + G ++ A Y+ LG+ +++ S+ + S Sbjct: 315 TLSELKYPLHVISKIVGHRSHTITATRYSH------LGLDHAKEASADIGS 359 >gi|78777937|ref|YP_394252.1| Phage integrase [Sulfurimonas denitrificans DSM 1251] gi|78498477|gb|ABB45017.1| Phage integrase [Sulfurimonas denitrificans DSM 1251] Length = 270 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 35/247 (14%), Positives = 84/247 (34%), Gaps = 16/247 (6%) Query: 85 GSLAVNSRISF-ESYFDQI--IRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMR 141 + + S+ ES + + I D ++ + R + + P + + L+++R Sbjct: 11 RGYSDLTIKSYDESITEALKSIEFVQDKNHILLNLMPYRIKISTL--NPKTISKKLSAIR 68 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY 201 + E + + K +P + + ++ R+ Sbjct: 69 SFADYLNDNEISVM--LKGDDSIKVAKTLPKPIS--HVNIIEAINLASLDERVVVTLFYT 124 Query: 202 SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG----FMKLLAMTPIGKETFFI 257 GLR S+ ++++ + + K V L + + L+ +P K F Sbjct: 125 LGLRISELASLELKNVSDEWVRVI-GKGSKQRDVPLLEQSKKVLDEYLSKSPHKKFVF-- 181 Query: 258 NNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVD 317 + +K++ + G+ S H +R A+ + A ++ G ++ Sbjct: 182 EKNGEKLSENSLRYIITKVFRRVGLKVSPHQLRHSFASQLLNGNAPIADVSELLGHSSMA 241 Query: 318 QAETYTK 324 + YTK Sbjct: 242 TTQIYTK 248 >gi|307565729|ref|ZP_07628198.1| phage integrase, N-terminal SAM domain protein [Prevotella amnii CRIS 21A-A] gi|307345555|gb|EFN90923.1| phage integrase, N-terminal SAM domain protein [Prevotella amnii CRIS 21A-A] Length = 292 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 44/261 (16%), Positives = 94/261 (36%), Gaps = 21/261 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFD----YRKITTKHIRSG---VESRKHTPSSAIQFL 137 ++ + S+ + D + I + IR+ + K SS + L Sbjct: 15 KGYSLKTIESYREDLNGFELFYKSCDEQLTLKSIDSDVIRNWVEYMMDNKAAVSSVNRRL 74 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ-----P 192 +++R L+++ ++ +V +P V PK++ + +M G Sbjct: 75 SALRSLYRYLLKHRFVEKDPVHGVRGPKKQKPLPVFVKESEMDCLLRKEMWGGVYNDVLA 134 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLL------ 245 R L +G+R S+ + + ++K T K + + + L Sbjct: 135 RAIIMMLYETGMRLSEITGLDMSSVDFYTCTVKVTGKRNKQRIIPIGQELEEELKSYLKK 194 Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGAT 303 ++ G++ FF+ ++NA Q K +K ++ H +R AT + A Sbjct: 195 RVSVEGEKAFFVTEKGIRVNANQVRYLVKKNLSKVSTLKKRTPHVLRHSFATAMLNHKAG 254 Query: 304 AHELMATYGWKTVDQAETYTK 324 + G +++ E YT Sbjct: 255 LESVRKLLGHESLATTEVYTH 275 >gi|291457408|ref|ZP_06596798.1| integrase/recombinase, phage integrase family [Bifidobacterium breve DSM 20213] gi|322691668|ref|YP_004221238.1| phage integrase [Bifidobacterium longum subsp. longum JCM 1217] gi|291381243|gb|EFE88761.1| integrase/recombinase, phage integrase family [Bifidobacterium breve DSM 20213] gi|320456524|dbj|BAJ67146.1| phage integrase [Bifidobacterium longum subsp. longum JCM 1217] Length = 319 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 36/289 (12%), Positives = 92/289 (31%), Gaps = 15/289 (5%) Query: 64 PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123 P ++ + + L++ + + + + +ES + + +I + +R + Sbjct: 34 PTQETSAPQNLLTLFLTAKEVEGCSPKTIAYYESTLQHMTQALA-KPCTRINSDDLREYL 92 Query: 124 ESRKHTPSS----AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179 ++ + M F W ++Y+ +P + R K + E++ Sbjct: 93 NRYENERHAGKVTIDNIRRIMSSFFAWLEDEDYIVKSPVRRIHRVKTAVMAKEVLSDENL 152 Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELP 238 + + + + L +G+R + + + + T K V Sbjct: 153 ETLRDRCGT-LRDLAIVDILASTGMRVGELVGLNIADVNLQERECLVTGKGNKQRPVYFD 211 Query: 239 DG----FMKLLAMTPIGKETFF--INNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRK 291 L F +N D +++ + AG+++ H R+ Sbjct: 212 ARTKLHLTAYLQSRNDSNPALFVALNGDGDRISIGGIESRLRQLGKDAGIHRVHPHKFRR 271 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340 AT + D G ++ G +D Y ++ + + R + Sbjct: 272 TLATHAIDKGMPIEQVQKLLGHARIDTTMHYV-MVNQNNVKASHRRYLE 319 >gi|85373645|ref|YP_457707.1| site-specific recombinase, phage integrase family protein [Erythrobacter litoralis HTCC2594] gi|84786728|gb|ABC62910.1| site-specific recombinase, phage integrase family protein [Erythrobacter litoralis HTCC2594] Length = 390 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 58/325 (17%), Positives = 107/325 (32%), Gaps = 20/325 (6%) Query: 19 GKIIYYFR---KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR---KKPTTLK 72 G ++ R +G RRI L E A A R K T+ Sbjct: 48 GNYFWFVRLRHRGKHRRITLGRTDELEAGLARAQARRILAETALDGLPKRAVVKATPTMT 107 Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES-RKHTPS 131 + Y ++ +++++ I GD I I + + Sbjct: 108 DFVEAYWDDLSRVWKPSTTKRNWDAWRLDIKPTFGDTRVADILPADIHRWRDGCAGESEV 167 Query: 132 SAIQFLTSMRVLFKWAVRQEYV--AINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 + + + L K+A + NPC + R KR++ R T + ++ + E Sbjct: 168 KFNRAVPVLSALLKYAEALKMRRPGSNPCRGMPRYKRQSVE-RYLTPAEYRRIGAALREA 226 Query: 190 SQPRLA----FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245 R A LL++G R + + ++ + KTG + + L +L Sbjct: 227 EADRPAEVAIARLLLFTGARVGEIKNLRWEWVKPPRLLLPDSKTGPKV-IWLNSQAQDVL 285 Query: 246 AMTPI--GKETFFINNDK-QKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGA 302 A+ E F N + +N Q+ F+ + A + H +R A+ + Sbjct: 286 AVIERREDSELVFPNKTGKRPVNFDQWWFVFRRRC--ALPDVRIHDLRHSFASTAIMENV 343 Query: 303 TAHELMATYGWKTVDQAETYTKGAD 327 + G K V+ Y +D Sbjct: 344 PLSTIGKLLGHKLVETTAKYAHLSD 368 >gi|28867763|ref|NP_790382.1| site-specific recombinase, phage integrase family [Pseudomonas syringae pv. tomato str. DC3000] gi|28850998|gb|AAO54077.1| site-specific recombinase, phage integrase family [Pseudomonas syringae pv. tomato str. DC3000] Length = 413 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 51/289 (17%), Positives = 99/289 (34%), Gaps = 26/289 (8%) Query: 60 YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119 YI + TL+ + Y S + ++ S ++I G + ++ I Sbjct: 97 YIQRSGSERMTLEAALKRYL-SDITPTKKPTTQRGETSKAKKLIEHLGKYSLAALSADII 155 Query: 120 RSGVESRKHTPS-----SAIQF---LTSMRVLFKWAVRQEY---VAINPCLSVERPKRKT 168 + R + PS S L + L+ A+ QE+ + NP L++ +P Sbjct: 156 AGYRDKRLNEPSRGGTISNNTVRLELALLSHLYTVAI-QEWGLGLTFNPVLNIRKPSPGD 214 Query: 169 EGIRPWTKEDMQQFKSFWSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQN--NIFSI 224 R + E+ + + + S P L L +G+R S+ + + + Sbjct: 215 GRDRRLSPEEERLLLAAVNRHSNPMLGWIVCIALETGMRSSEISSLRRPQVDLAKRVIRL 274 Query: 225 KTQKTGTIITVELPDGFMKLLAMT------PIGKETFFINNDKQ--KMNATQFSIWFKAK 276 K TV L ++ PI F + K F+ + Sbjct: 275 SDTKNDGSRTVPLSKRATEVFKAAMDNPVRPIDCNLVFFGEPGKDGKRRPYTFTKIWGQL 334 Query: 277 ATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 K + + H +R + + + G + E+ A G K++ + YT Sbjct: 335 KKKLDLPDFRFHDLRHEAVSRLVEGGLSDQEVSAISGHKSMQMLKRYTH 383 >gi|325963702|ref|YP_004241608.1| tyrosine recombinase XerC subunit [Arthrobacter phenanthrenivorans Sphe3] gi|323469789|gb|ADX73474.1| tyrosine recombinase XerC subunit [Arthrobacter phenanthrenivorans Sphe3] Length = 308 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 43/306 (14%), Positives = 100/306 (32%), Gaps = 31/306 (10%) Query: 59 EYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKIT 115 E P + L + Y A +++ ++ + ++ + G + Sbjct: 2 ENPELPVELAGALDAF-ARYL--AAERAVSPHTLRGYVGDVRGLLSHASIEGAKRLEDLE 58 Query: 116 TKHIRSGVESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172 R + ++ ++ + S+RV WA+ +E + +P L ++ PKR+ Sbjct: 59 LGTFRRWLGAQSQAGAARTTLARRSASVRVFTAWALGEERIVADPALRLKAPKREASLPG 118 Query: 173 PWTKEDMQQFKSF--------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224 + + + + R E L +G+R + + L + ++ Sbjct: 119 VLHSGQLARLLAGLAQAAEEGAPLALRNRAIVELLYATGVRVGELAGLDIDDLDPDRRTL 178 Query: 225 KTQKTGT---------IITVELPDGFMKL--LAMTPIGKETFFINNDKQKMNATQFSIWF 273 + G + + D + L + F+ +++ Q Sbjct: 179 RVIGKGNKERTVPYGVPAALAVDDWLRRGRPLVARSTSGQALFLGMRGGRVDQRQVRTMV 238 Query: 274 KAKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIR 330 + G + H +R +AT D GA + G ++ + YT DR+R Sbjct: 239 NGLFKELGDTSASGPHALRHSAATHLLDGGADLRAVQEILGHSSLATTQIYTHVSVDRLR 298 Query: 331 LGIKNS 336 + + Sbjct: 299 KSYQQA 304 >gi|209883237|ref|YP_002287094.1| tyrosine recombinase XerD [Oligotropha carboxidovorans OM5] gi|209871433|gb|ACI91229.1| tyrosine recombinase XerD [Oligotropha carboxidovorans OM5] Length = 316 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 49/278 (17%), Positives = 94/278 (33%), Gaps = 37/278 (13%) Query: 89 VNSRISFESYFDQIIR--KSGDFDYRKITTKHIR---SGVESRKHTPSSAIQFLTSMRVL 143 N+ ++ S + + D+ + T+ +R + ++ R SS + L+S R L Sbjct: 25 DNTLNAYRSDLEDLSAFLAHAKTDFARADTQALRDYLADLDRRGFKSSSVARRLSSTRHL 84 Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP----------- 192 F++ + + + +P + PKR + + D+ + E + Sbjct: 85 FRFLLNERKRSDDPAAILAGPKRGRPLPKVLSIADVDRLLGKAREFADQEQAPLQKLRAM 144 Query: 193 RLA--FEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELP----DGFMKLL 245 RL E L +GLR S+ + + + + K V L + L Sbjct: 145 RLWCLLEVLYATGLRVSELVALPLSAAKRDARMIVVRGKGDKERLVPLNQSSREAMTAYL 204 Query: 246 AMT-----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRK 291 A T P K F + + + F+ K A A ++ S H +R Sbjct: 205 AATEAAKTDKTKSEPRSKWLFPSSGESGHLTRQHFARDLKELAMAAAISPRLISPHVLRH 264 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 A+ GA + G + + YT + Sbjct: 265 AFASHLLHNGADLRIVQTLLGHTDISTTQIYTHVVEER 302 >gi|322691408|ref|YP_004220978.1| tyrosine recombinase [Bifidobacterium longum subsp. longum JCM 1217] gi|320456264|dbj|BAJ66886.1| tyrosine recombinase [Bifidobacterium longum subsp. longum JCM 1217] Length = 357 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 54/329 (16%), Positives = 97/329 (29%), Gaps = 82/329 (24%) Query: 76 SEYRKSAHWGSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIRSGV--ESRKHTP 130 Y KS L+ N+ ++ + + G D +IT +RS + ESR H Sbjct: 14 VSYLKSNR--GLSANTLKAYRADLTACLHLFELRGVTDLNEITLDDLRSWMAVESRDHAR 71 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK------- 183 SS + ++R F WA +P ++ P + T+ +Q Sbjct: 72 SSMARKTVAVRGFFAWAYEHGVTNTDPAATLMTPSIPSTLPAVLTESQAEQLLDVAEQAV 131 Query: 184 ----------------------------------------SFWSEGSQPRLAFE------ 197 + + R+ E Sbjct: 132 ATNQYKGDGGAAAASGSGSGKAVGKTADKSADTVNRNEAPARADKRDSARVVAESQRNAA 191 Query: 198 ---FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV------------ELPDGFM 242 L +G+R ++ + + + +IK G V + Sbjct: 192 ILELLYATGIRVAELVSMNIADIDFSTRTIKVTGKGNKQRVVPFGLPAQRALETWLEQGR 251 Query: 243 KLLAMTPIG------KETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSAT 295 +LA T F+ +++ A +AGV + S H +R +AT Sbjct: 252 PVLARTATDAVKSRAANALFLGARGGRIDQRIARDIVHRAAREAGVPDISPHALRHSAAT 311 Query: 296 ISADAGATAHELMATYGWKTVDQAETYTK 324 D GA E+ G ++ + YT Sbjct: 312 HMLDGGADLREVQEMLGHSSLKTTQRYTH 340 >gi|119475308|ref|ZP_01615661.1| tyrosine recombinase [marine gamma proteobacterium HTCC2143] gi|119451511|gb|EAW32744.1| tyrosine recombinase [marine gamma proteobacterium HTCC2143] Length = 312 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 38/274 (13%), Positives = 88/274 (32%), Gaps = 21/274 (7%) Query: 71 LKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRK------SGDFDYRKITTKHIRSGV 123 + I + L+ ++ ++ ++ + + + Sbjct: 13 WQTAIDSFLTYQEVARQLSPHTLSNYRRDLEKFADYCRHRAIVDHHHAHNSDVRQWIALL 72 Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 + +S + L+S+R +K++ +Q NP + ++ P+ + + + MQQF Sbjct: 73 HRNGLSGTSLSRSLSSLRSFYKYSNKQG-GDHNPAIGIKAPRGEKRLPKTLDIDSMQQFL 131 Query: 184 SFWSEG---SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPD 239 S + + R E SGLR S+ + N I T K T+ + Sbjct: 132 SIDGDDWLTVRDRAILELFYSSGLRLSELVDMDTEDFDLQNGLIIVTGKGRKTRTLPVGS 191 Query: 240 GFMKLLAM-------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVR 290 + L F++ ++ K + + G+ + H +R Sbjct: 192 HAIAALKNWFSVRSDAHPINNAAFVSAKGTRLGQRGIQQRLKKYSLQQGLGQKIHPHMLR 251 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK 324 A+ ++ + G + + YT Sbjct: 252 HSFASHMLESSGDLRAVQELLGHANITTTQVYTH 285 >gi|258622064|ref|ZP_05717091.1| phage integrase family protein [Vibrio mimicus VM573] gi|258585678|gb|EEW10400.1| phage integrase family protein [Vibrio mimicus VM573] Length = 402 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 43/250 (17%), Positives = 86/250 (34%), Gaps = 15/250 (6%) Query: 101 QIIRKSGDFDYRKITTKHIRSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPC 158 K G I + I+ ++ P++ + + + +F+ A+ YV NP Sbjct: 141 HFYSKWGKKPLTDIGQQDIQKLLDGLLEGRKPATVNRLRSLVLRMFRLAMEWGYVDSNPG 200 Query: 159 LSVERPKRKTEGIRPWTKEDMQQFKSFWSE--GSQPRLAFEFLLYSGLRCSDSCRAGVQH 216 + + K R ++ ++ F +E A +F L +G+R + + + Sbjct: 201 QYIRKLKENNVRQRFLSRAEVSSFIKACNEEPNRTQSNALKFALLTGMRIGEITSSKWEC 260 Query: 217 L----QNNI-FSIKTQKTGTIITVELPDGFMKLL---AMTPIGKETFFINNDKQKMNATQ 268 L N + K+G TV L +++ K + D Sbjct: 261 LTVDDDGNWSLFLPHTKSGLSRTVLLNHLAKEVINDQRRFQQLKNPYIFAGDAPGRPIAH 320 Query: 269 FSIWFKAKATKAGV--NKSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKG 325 F AG+ N H +R A+I ++G AT +++ G ++ + Y Sbjct: 321 PKKAFARIKKAAGITDNFRIHDLRHSFASILINSGNATLYDVQHLLGHQSPQTSTRYAHL 380 Query: 326 ADRIRLGIKN 335 A + Sbjct: 381 ASSRLREVSA 390 >gi|21241407|ref|NP_640989.1| site-specific tyrosine recombinase XerC [Xanthomonas axonopodis pv. citri str. 306] gi|34222918|sp|Q8PPP9|XERC_XANAC RecName: Full=Tyrosine recombinase xerC gi|21106742|gb|AAM35525.1| site-specific recombinase [Xanthomonas axonopodis pv. citri str. 306] Length = 305 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 32/219 (14%), Positives = 72/219 (32%), Gaps = 11/219 (5%) Query: 117 KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176 + + R + S + L++ R + W +++ ++ +P ++ PK + + Sbjct: 63 RQFVAAEHRRGLSAKSLQRRLSACRSYYAWLLKRGRISASPAAALRAPKAPRKLPQVLDA 122 Query: 177 EDMQQFKSF---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTI 232 ++ + G + R E SGLR S+ C + L ++ + K Sbjct: 123 DEAVRLVEVPTDAPLGLRDRALLEVFYSSGLRLSELCALRWRDLDLDSGLVMVLGKGSKQ 182 Query: 233 ITVELPDGFMKLLA-----MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKS 285 V + + L F ++ I K A + G+ + Sbjct: 183 RLVPVGSHAIAALREWRRDSGASADSHVFPGRAGGAISQRAVQIRIKQLAVRQGMFKDVH 242 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R A+ ++ + G + + YT Sbjct: 243 PHMLRHSFASHILESSGDLRGVQELLGHSDIATTQIYTH 281 >gi|23014819|ref|ZP_00054617.1| COG0582: Integrase [Magnetospirillum magnetotacticum MS-1] Length = 314 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 54/281 (19%), Positives = 94/281 (33%), Gaps = 23/281 (8%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESR---K 127 +WL SE R SAH +F ++ + + + + R+ + R Sbjct: 23 QWLGSEKRASAHTLDGYGRDLAAFLTFLTEHLAAEPDLAALAALGPGDFRAFLARRTQDG 82 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPC-LSVERPKRKTEGIRPW-TKEDMQQFKSF 185 SS + ++++R FK+ R V NP +V+ P+ +P E ++ S Sbjct: 83 LGRSSLARLMSTLRGFFKFLDRHGLV-HNPAIKAVKSPRPPKSIPKPLAPDEALEALSSA 141 Query: 186 WSEGSQPRLA------FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP- 238 +P LA F L +GLR ++ + L + T K V + Sbjct: 142 GELHDEPWLAARDVALFSLLYGAGLRLGEALSLLRRDLPKGDTMVITGKGNKQRVVPVLP 201 Query: 239 ---DGFMKLLAMTP---IGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVR 290 D L P + F+ +N + G+ + H +R Sbjct: 202 VVRDAIADYLKRLPFPSESTDPVFLGARGGPLNPGVVQRQMRRLRQVMGLPDTATPHALR 261 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 AT G + G ++ + YT D RL Sbjct: 262 HSFATHLLAGGGDLRTIQELLGHSSLSTTQRYT-EVDAARL 301 >gi|254445051|ref|ZP_05058527.1| site-specific recombinase, phage integrase family protein [Verrucomicrobiae bacterium DG1235] gi|198259359|gb|EDY83667.1| site-specific recombinase, phage integrase family protein [Verrucomicrobiae bacterium DG1235] Length = 307 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 42/269 (15%), Positives = 94/269 (34%), Gaps = 30/269 (11%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYR---KITTKHIRSGVE-----SRKHTPSSAIQF 136 L+ + ++E+ + + D D + + +R + R+ + + + Sbjct: 23 RRLSAYTVRNYEAALETFFQFL-DTDSKWGGNLGKVSLREARDFVIEQQRRVSRRTLHNY 81 Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS------ 190 ++ +R FK+ +RQ + NP + + PK + T++ ++ Sbjct: 82 VSGLRTFFKYWIRQGKLEANPLVGLVLPKLPKKLPAFMTQKQVKLLLDGPMLLLENESIT 141 Query: 191 -----QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGT-------IITVEL 237 + RL E L +G R S+ C + + + K G + + + Sbjct: 142 AFQAWRDRLVLELLYGAGFRVSELCGLTYGQVSFDEGVARIVGKGGKSRICPLGRVAMAV 201 Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSAT 295 D + + A+ + ++N + K + K A + + + H +R AT Sbjct: 202 LDKWRREFAVGTAFADPVVLSNRRVKWTPRGVQLLLKKYLALADLPMDLTPHKIRHSYAT 261 Query: 296 ISADAGATAHELMATYGWKTVDQAETYTK 324 D GA + G + + YT Sbjct: 262 HLLDNGADLRLVQELLGHAKLSTTQIYTH 290 >gi|120609495|ref|YP_969173.1| phage integrase family protein [Acidovorax citrulli AAC00-1] gi|120587959|gb|ABM31399.1| phage integrase family protein [Acidovorax citrulli AAC00-1] Length = 326 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 42/289 (14%), Positives = 79/289 (27%), Gaps = 39/289 (13%) Query: 75 ISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESR---KH 128 + Y + LA + + ++ + D ++ T HIR V Sbjct: 15 VLRYLEHVRVEKRLAERTVTLYTLDLAKLAASARDAGVPLLQLQTAHIRRFVAQMHAGGR 74 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS- 187 + L+ R F WA RQ V NP V P+ + +D + F Sbjct: 75 SGRGIALILSGWRGFFAWAARQGLVPHNPVQGVRAPRAPKPLPKALGVDDAVRLAEFEGS 134 Query: 188 ------EGSQPRLAFEFLLYSGLRCSDSCRA----GVQHLQNNIFSIKTQ--------KT 229 ++ E L GLR + G + I + K Sbjct: 135 SGSDPWLEARDAAMVELLYGCGLRVGELAGLDAVPGPDTQRQGRGWIDLEAAEAHVFGKG 194 Query: 230 GTIITVELPD------------GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKA 277 +V + A + F+ ++ + ++ Sbjct: 195 SKRRSVPVGSAALAALRAWLEVRLQPFGAASGRVDAALFLGRRGARLTGQSIWSRLRQRS 254 Query: 278 TKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 AG+ H +R A+ + + G + + YT+ Sbjct: 255 QLAGLSTPVHPHMLRHSFASHLLQSSGDLRAVQELLGHANITTTQVYTR 303 >gi|299148759|ref|ZP_07041821.1| integrase/recombinase [Bacteroides sp. 3_1_23] gi|301311646|ref|ZP_07217572.1| integrase/recombinase [Bacteroides sp. 20_3] gi|15072728|emb|CAC47935.1| TpnF protein [Bacteroides thetaiotaomicron] gi|298513520|gb|EFI37407.1| integrase/recombinase [Bacteroides sp. 3_1_23] gi|300830387|gb|EFK61031.1| integrase/recombinase [Bacteroides sp. 20_3] Length = 279 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 44/256 (17%), Positives = 91/256 (35%), Gaps = 19/256 (7%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFD-YRKITTKHIRSGVESR----KHTPSSAIQFLTS 139 A N+ S++ Y ++ + +I I + + + K + S + + Sbjct: 17 QRYAGNTIRSYKDYASIFLKHVSKYPSLEEIPLSDIEAFINEKVQNGKISVSYQKGLVGA 76 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRK-TEGIRPWTKEDMQQFKSFWSEGSQPRLAFEF 198 ++ +++ + ++ L PKR ++ + ++KE+++ ++ + + Sbjct: 77 IKKMYELILDKKIQ-----LDYLYPKRSFSKLPKFFSKEEVRNILDN-TQNLKHKAILMT 130 Query: 199 LLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAM---TPIGKE 253 + GLR S+ ++ ++ + I I K V LPD + L KE Sbjct: 131 IYSCGLRLSELLNLKIKDIKSSDGIIRIHQSKGNKDRIVSLPDKLLATLRHYYQAFKPKE 190 Query: 254 TFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATY 311 F K + + K KA V S H R AT +G + Sbjct: 191 YLFEGEKGGKYSERSVQLILKKALIKANVQSEGSVHTGRHSYATHLIQSGIDIRIVKELL 250 Query: 312 GWKTVDQAETYTKGAD 327 G + + YT D Sbjct: 251 GHENIKTTMIYTHITD 266 >gi|325953868|ref|YP_004237528.1| integrase [Weeksella virosa DSM 16922] gi|323436486|gb|ADX66950.1| integrase family protein [Weeksella virosa DSM 16922] Length = 388 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 46/291 (15%), Positives = 96/291 (32%), Gaps = 36/291 (12%) Query: 85 GSLAVNSRISF----ESYFDQIIR-KSGDFDYRKITTKHIRSGVESRKHTP----SSAIQ 135 L S + D +IR K + I HI++ +E K + + + Sbjct: 97 QRLKPKSYSDYLCTNRFILDAVIRLKYDKLSIQSIERYHIKTIMEDIKISRKWSNHAYNK 156 Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA 195 L ++ + V + + NP + K +T T ++ + + L Sbjct: 157 NLGYLKSILSELVEFDIIKTNPAHGIRLLKYETSPTSFPTDQEQTKIIQHLYARNFTYLR 216 Query: 196 FEFLLY-SGLRCSDSCRAGVQHLQNNI----FSIKTQKTGTIITVELPDGFMKLLA--MT 248 F LY +G+R ++ R V + + KT V + K L ++ Sbjct: 217 FVKALYQTGMRPAELLRLKVGDVDLDRDLILLKSDDGKTNKYRLVPIKSDLKKDLLTIIS 276 Query: 249 PIGKETFFI----NNDKQK------MNATQFSI--------WFKAKATKAGVNKSAHGVR 290 P ++ K + ++ I W K + G+NK+ + ++ Sbjct: 277 PTHGPDLYLFGTPRKHGGKLDYSEMFSPNKYKIKRDTVTKYWKKYIKDELGINKNLYSLK 336 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341 +A G + A +G E Y + +R + ++++ Sbjct: 337 HKAANDMMFDGLDIETIQAIFGHSKAKTTEIYANQINLLR--FEKAKKLER 385 >gi|319936293|ref|ZP_08010711.1| integrase/recombinase XerC [Coprobacillus sp. 29_1] gi|319808669|gb|EFW05213.1| integrase/recombinase XerC [Coprobacillus sp. 29_1] Length = 365 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 52/306 (16%), Positives = 103/306 (33%), Gaps = 29/306 (9%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR-- 126 T I Y L +N+ + ++ + +I DF +IT HI Sbjct: 57 TFDDFIEVYFDDKK-QRLKLNTFLMKQNVINTKIRPYFKDFKMCEITPNHILKWQNDMMK 115 Query: 127 -------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE-GIRPWTKED 178 K+T S+ + +F AV+ + NP V + E + WT E+ Sbjct: 116 QHHKKGEKYTSSTLKTMHAQLSAIFNHAVKYYRLDKNPARIVGTMGSEDEIEMLFWTTEE 175 Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK---------- 228 ++F + +AFE L ++G+R + ++ + + ++ K Sbjct: 176 YKKFAFEIMDNPISYMAFEMLYWTGIREGELLALTLEDIDFDKCKLRINKSYQRLQGEDV 235 Query: 229 ------TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282 + + V++PD + + G + +N + K A V Sbjct: 236 ITTPKTSKSNRVVDIPDFLVDEVKDYVAGLPGLKKTDRMFPINKSFLYREMKRGCKAADV 295 Query: 283 NK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341 K H +R ++ + G +A + G +++ Y I N+ Sbjct: 296 KKIRVHDLRHSHVSLLIEKGFSALAIADRVGHESIHITYKYAHLFPSKGKEIANTLNEEK 355 Query: 342 VVDSDD 347 D D+ Sbjct: 356 ERDYDE 361 >gi|149370706|ref|ZP_01890395.1| tyrosine type site-specific recombinase [unidentified eubacterium SCB49] gi|149356257|gb|EDM44814.1| tyrosine type site-specific recombinase [unidentified eubacterium SCB49] Length = 284 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 40/269 (14%), Positives = 88/269 (32%), Gaps = 11/269 (4%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS-SA 133 + +++K L+ N+ +++ + + ++ + +R S Sbjct: 14 LIQFKKWMEEQRLSHNTIMTYSNAVSLFLNYIVKHGTTEMNEEWVRRFNYDYIIKNRFSI 73 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193 + + K+ + + ERP + +K+++++ + + Sbjct: 74 SYQNQCISGVKKYLEFRGLAVT--LENYERPDKGKTLPAVLSKQEVKRLLDGIK-NLKHK 130 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLA---MT 248 + SGLR ++ + + I+ K V L ++ L Sbjct: 131 TLLSLVYSSGLRIGEALSLRPTAIDSTRKLIFIEGAKGKKDRYVLLSSKLLEDLRKYYTV 190 Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHE 306 K F +A+ FK+ A +AG+ K H +R AT + G Sbjct: 191 YRPKTYLFEGRSGTMYSASSARAVFKSAAKRAGITKEVRLHTLRHSFATHLLENGTDLRY 250 Query: 307 LMATYGWKTVDQAETYTKGADRIRLGIKN 335 + G ++ YT + R IKN Sbjct: 251 IQQLLGHQSPKTTMIYTHVSTRSLQNIKN 279 >gi|317126229|ref|YP_004100341.1| integrase [Intrasporangium calvum DSM 43043] gi|315590317|gb|ADU49614.1| integrase family protein [Intrasporangium calvum DSM 43043] Length = 375 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 60/328 (18%), Positives = 102/328 (31%), Gaps = 34/328 (10%) Query: 28 GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT--TLKWLISEYRKSAHW- 84 +G+R P + + +RE + TLK Y Sbjct: 29 PNGKRQAAPNTFSTRVEAERWLLRVHESLEREEWRDSGAQLGRRTLKDYAESYLTENPNV 88 Query: 85 -GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE---SRKHTPSSAIQFLTSM 140 A SR + + ++ D IT +RS + +S Q + Sbjct: 89 GERWAETSRRNMRLHLTPLL----DMPVASITPAVVRSWHAQALAGTGGRTSIAQTYRLL 144 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL 200 R + AV E + NPC + + + ++ + + R A Sbjct: 145 RSVLNMAVLDEAIQKNPCQIPRAGTDRPKERPIASPAEVAALIE--AITPRYRAAVALAA 202 Query: 201 YSGLRCSDSCRAGVQHLQNNIFSIKTQKT------------------GTIITVELPDGFM 242 + GLR + V + +++ KT V +P + Sbjct: 203 WCGLRRGELMALRVTDVDLEKATVRVDKTYVELLESRRRFEKEPKSQAGRRVVSIPPHVL 262 Query: 243 KLLAM---TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISAD 299 L+A T G E FF+ +D +M F GVN S H +R T++A Sbjct: 263 PLMAEHLETWAGPEFFFVGHDGTRMAGNALYQAFVRARKVVGVNLSFHDLRHTGQTLAAA 322 Query: 300 AGATAHELMATYGWKTVDQAETYTKGAD 327 GA+ +L G + A Y + Sbjct: 323 TGASLADLKRRLGHSSTAAALRYMHAVE 350 >gi|311695984|gb|ADP98857.1| phage integrase family protein [marine bacterium HP15] Length = 327 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 44/306 (14%), Positives = 90/306 (29%), Gaps = 18/306 (5%) Query: 28 GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSL 87 +RIR + + + + N + TLK LI + + L Sbjct: 19 RGSKRIR-KSFDSKAEAKRFETFVMAKRAEGREWNPSKADNRTLKQLIKLWFNAKGVH-L 76 Query: 88 AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA---IQFLTSMRVLF 144 R + D + G+ R + + + +S L + ++ Sbjct: 77 KDGERR--KRCLDTMAEFLGNPIARTVKPTSFLAYRAHKIQKGASKKTLNNHLGYLNAVY 134 Query: 145 KWAVRQEYVA-INPCLSVERPKRKTEGIRPWTKEDMQQFKSF---WSEGSQPRLAFEFLL 200 R + NP +VE + + T E ++ +S+ L L Sbjct: 135 NQLNRLNEIDFDNPIRNVEMIRLDERELSWLTVEQIRHLLKTIEDFSQNPHVHLLTRICL 194 Query: 201 YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINND 260 +G R ++ ++H+Q + K+G +V + + + F Sbjct: 195 ATGARWGEAENLQLRHVQEGKLTFVNTKSGKSRSVPVSKELFEEIRKHLKEHGCF----- 249 Query: 261 KQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320 + + F ++AH +R A+ G L G + Sbjct: 250 --SFSLSAFRRALDKSGITLPPGQAAHVLRHTFASHFLMNGGDIVTLQKILGHSHISMTL 307 Query: 321 TYTKGA 326 Y+ A Sbjct: 308 RYSHLA 313 >gi|319761944|ref|YP_004125881.1| hypothetical protein Alide_1232 [Alicycliphilus denitrificans BC] gi|317116505|gb|ADU98993.1| hypothetical protein Alide_1232 [Alicycliphilus denitrificans BC] Length = 359 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 52/339 (15%), Positives = 102/339 (30%), Gaps = 44/339 (12%) Query: 17 RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76 +HG Y R G R+ + +AL P+ T+ + + Sbjct: 21 KHGAFYYRHRDGRWERV-----GTDVKVAKERAALYND---------PQGVYGTVAYWLD 66 Query: 77 EYRKS----AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE--SRKHTP 130 ++ G+L+ + + + G I +H+++ ++ ++ P Sbjct: 67 QFIVDCTARVAAGTLSARTLADYTENIVPLKAYFGAMLPEHIEPQHVQAYLDIGAKAGRP 126 Query: 131 SSAIQFLTSMRVLFKWAVRQEY--VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 A + + W +R + +NPC+ K E R + + + + Sbjct: 127 VRANREKACLSSCLSWLMRTGRTTLKVNPCMQASGTKGNPESKRERYVTHAEYIEVYEAA 186 Query: 189 GSQPRLAFEFLLYSGLRC-SDSCRAGVQ------HLQNNIFSIKTQKTGTIITVELPDGF 241 G+Q RL E + R SD H + S KTG + + L + Sbjct: 187 GTQVRLLMELTYRTLQRPESDLLGWTPAVLARDPHSGARVLSFIQGKTGMRVKIALTERL 246 Query: 242 MKLLAMT----PIGKETFFINNDKQKMNATQFSIWFK-------AKATKAGVNK----SA 286 L+ P+ + N + + + G+ K Sbjct: 247 ESLIHRAMGKVPVISQPLVHNRKGEGYTYSGITAMLTAAIRKVNKAREAKGLPKLESFGF 306 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 ++ AT AG ++ G E Y K Sbjct: 307 RDLKGKGATDMWLAGHPIEQIQLLCGHSDKATTEKYIKA 345 >gi|294636531|ref|ZP_06714898.1| site-specific recombinase, phage integrase family [Edwardsiella tarda ATCC 23685] gi|291090228|gb|EFE22789.1| site-specific recombinase, phage integrase family [Edwardsiella tarda ATCC 23685] Length = 378 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 58/335 (17%), Positives = 108/335 (32%), Gaps = 30/335 (8%) Query: 16 TRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75 RHG ++ G + L Y + I A + T+ I Sbjct: 20 NRHGFFVWRH-PLTGSELPLGYITQREAIRQAREANHYLAALTPSPLPEPHEIPTVSQWI 78 Query: 76 SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKHTPSSA 133 +EY + +A N+ + S + G +I+T+ I + ++A Sbjct: 79 TEYLQRLEQRGVAANTLRARRSQSKTVHAMIGPRYLTQISTRDIAILLHPYILDGRLTAA 138 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK-SFWSEGSQP 192 + + LF+ AV ++ NP P + + R + + ++ + EG +P Sbjct: 139 SLMRSFLNALFREAVAAGFIDHNPVAQTRTPPIRVKRRRLSEETLLAVYRLALQGEGKKP 198 Query: 193 RLA--FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------ELPDGF 241 LA E L +G R D C Q ++ N + KTG + + Sbjct: 199 WLARGIELALLTGQRREDLCTLRWQDVRENKLWLIQGKTGARLAITTRLHLQLGPYALRL 258 Query: 242 MKLLAMTPIGKET-FFINND--------KQKMNATQFSIWFKAKATKAGV-----NKSAH 287 ++L + + +N+ + S F ++G+ S H Sbjct: 259 SEVLDRCRAQGPSDYLLNSRRPRLHRAPGGPLVPDTLSKGFSRLLDQSGLVHAPHPPSFH 318 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 +R A+ A G K+ E Y Sbjct: 319 EIR-SLASRMYQAQYGTEFCQHLLGHKSRLMTEKY 352 >gi|160945568|ref|ZP_02092794.1| hypothetical protein FAEPRAM212_03097 [Faecalibacterium prausnitzii M21/2] gi|313113644|ref|ZP_07799225.1| site-specific recombinase, phage integrase family [Faecalibacterium cf. prausnitzii KLE1255] gi|158443299|gb|EDP20304.1| hypothetical protein FAEPRAM212_03097 [Faecalibacterium prausnitzii M21/2] gi|310624012|gb|EFQ07386.1| site-specific recombinase, phage integrase family [Faecalibacterium cf. prausnitzii KLE1255] Length = 342 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 36/270 (13%), Positives = 86/270 (31%), Gaps = 26/270 (9%) Query: 86 SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS---MRV 142 ++A ++ S++ + I I + ++ + S + + Sbjct: 61 NIAPTTQESYKYCLKMLKEGFYHRPLTVIRPIDIENFLKGMRRDGRSDSYISKARGMLYQ 120 Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIR--PWTKEDMQQFKSFWSEGSQPRLAFEFLL 200 +F+ A + V NP E+ + R +T ++ + + L+ LL Sbjct: 121 IFQKAEANDLVRRNPVRLAEKMRASGTAKRKEAFTTAEVAHLMKVLPD-DRMGLSIRLLL 179 Query: 201 YSGLRCSDSCRAGVQHL--QNNIFSIKT--------------QKTGTIITVELP-DGFMK 243 +G+R + Q + ++ I+ + +I + +P + Sbjct: 180 GTGMRMQELLALEPQFIEEDGSVIHIRQAVKVVKGTVSIGSPKSKDSIRDIPVPLNVRPC 239 Query: 244 LLAMTPIGKETFFIN-NDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300 + + + + + N T F F+ +AG + + H R + Sbjct: 240 AIKLRDTTDQFIWESPKTGLPCNPTHFRDVFRKSLEEAGDVRLLTPHSCRHTYVSQMQAL 299 Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIR 330 G + + G + E Y + IR Sbjct: 300 GVDIQTIQSIVGHADTEMTEHYLHVQESIR 329 >gi|150010096|ref|YP_001304839.1| site-specific recombinase [Parabacteroides distasonis ATCC 8503] gi|149938520|gb|ABR45217.1| site-specific recombinase [Parabacteroides distasonis ATCC 8503] Length = 382 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 51/267 (19%), Positives = 93/267 (34%), Gaps = 18/267 (6%) Query: 95 FESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQF-----LTSMRVLFKWAVR 149 S + + + I T ++ + + P F + V AV+ Sbjct: 118 LRSLANHLRDYMPQCLLKDIDTGFVKGFIAHLRKQPYLKSDFTIHGYYRLLNVTLNKAVK 177 Query: 150 QEYVAINPCLSV---ERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRC 206 + + NPC S+ E+P + T T E++++ + + AF F + GLR Sbjct: 178 KGLILSNPCGSLDTDEKPHKPTSLRTYLTLEELKRLIRTDCVCPEVKKAFLFCCFCGLRI 237 Query: 207 SDSCRAGVQHLQNN-----IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK 261 SD + +Q I +KT I + L + +K L + + Sbjct: 238 SDLTALRWEDMQKEGNDKFRLQIIQRKTKEAIYLPLSEEAIKYLPARENENDNDRLGLIF 297 Query: 262 QKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318 + T K AG+ + H R AT+S G + + G K + Sbjct: 298 HLPSLTIICQVLKGWTLAAGIKNKKVTFHVSRHTFATLSLALGIDLYTVCKLLGHKNIIS 357 Query: 319 AETYTKGADRIRLGIKNSRRISSVVDS 345 + Y K D + + R + V+D+ Sbjct: 358 TQVYAKIIDASKR--QAIDRFNGVLDA 382 >gi|258542904|ref|YP_003188337.1| site-specific tyrosine recombinase XerC [Acetobacter pasteurianus IFO 3283-01] gi|256633982|dbj|BAH99957.1| phage DNA recombinase RipX/XerC [Acetobacter pasteurianus IFO 3283-01] gi|256637042|dbj|BAI03011.1| phage DNA recombinase RipX/XerC [Acetobacter pasteurianus IFO 3283-03] gi|256640094|dbj|BAI06056.1| phage DNA recombinase RipX/XerC [Acetobacter pasteurianus IFO 3283-07] gi|256643151|dbj|BAI09106.1| phage DNA recombinase RipX/XerC [Acetobacter pasteurianus IFO 3283-22] gi|256646206|dbj|BAI12154.1| phage DNA recombinase RipX/XerC [Acetobacter pasteurianus IFO 3283-26] gi|256649258|dbj|BAI15199.1| phage DNA recombinase RipX/XerC [Acetobacter pasteurianus IFO 3283-32] gi|256652245|dbj|BAI18179.1| phage DNA recombinase RipX/XerC [Acetobacter pasteurianus IFO 3283-01-42C] gi|256655302|dbj|BAI21229.1| phage DNA recombinase RipX/XerC [Acetobacter pasteurianus IFO 3283-12] Length = 315 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 48/268 (17%), Positives = 90/268 (33%), Gaps = 40/268 (14%) Query: 98 YFDQIIRKSGDFDYRKITTKHIRSGVE---SRKHTP-----------SSAIQFLTSMRVL 143 + D + G I+ + R+ + + P + + ++++R Sbjct: 42 HLDGLPDMIG---LGLISLRDFRAWLAYEQAEASKPTARKTSSDQATRTRARRVSAVRSF 98 Query: 144 FKWAVRQEYVAINPCLSV-ERPKRKTEGIRPWT-------KEDMQQFKSFWSEGSQPRLA 195 FK+ R++ V NP + + P+ K RP ED+ E + Sbjct: 99 FKYLARRQGVE-NPAIQLLSTPRTKKPLPRPLAKDQALAAPEDISDLAHTPMEQQRDAAL 157 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQ----NNIFSIKTQKTGTIITVELPDGFMKLLAM---- 247 F L GLR S++ + L +N+ I K G V + + L Sbjct: 158 FLLLYGCGLRISEALNLNIADLDVMRSSNVLRI-LGKGGKERLVPVLPVVQQALEAWRTR 216 Query: 248 --TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGAT 303 P F+ +++ + +G+ + H +R AT + GA Sbjct: 217 HPAPTPDAPLFVGVRGKRLQPAIAQKAMREWRHLSGLPDYVTPHALRHSFATHLMEGGAD 276 Query: 304 AHELMATYGWKTVDQAETYTKGADRIRL 331 + G ++ + YT AD RL Sbjct: 277 LRVIQELLGHASLSTTQRYT-LADEARL 303 >gi|313109025|ref|ZP_07794998.1| integrase [Pseudomonas aeruginosa 39016] gi|310881500|gb|EFQ40094.1| integrase [Pseudomonas aeruginosa 39016] Length = 399 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 59/325 (18%), Positives = 107/325 (32%), Gaps = 30/325 (9%) Query: 48 MSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKS 106 A + +K T+ L ++ + V+++ ++ D+ II Sbjct: 77 WLAEVRRGGDPGGAKAEARKAPTMAELCKKFMEDYSKKRNKVSTQDGYQGVIDRNIIPLL 136 Query: 107 GDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVA--INPCLSVERP 164 G + I +E + P+ A + +R +F A + NPC V Sbjct: 137 GRKKVHDVKRPDIAGLMEKLAYKPTEANKTFGVLRKMFNLAEVWGFRPDGTNPCRHVPM- 195 Query: 165 KRKTEGIRPWTKEDM----QQFKSFWSEGSQPR---LAFEFLLYSGLRCSDSCRAGVQ-- 215 + R E+M +Q + +EG + LA R S+ C Sbjct: 196 YPPGKETRLIVDEEMVRIFRQLEKLEAEGLENYVIPLAIRLQFEFAARRSEICPLEWSWL 255 Query: 216 HLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPI--GKETFFI--NNDKQKMN-ATQFS 270 +N K G I+ + + +LL+ P G N+ + + + Sbjct: 256 DFENRRVVWPDSKVGG-ISKPMSEEAYRLLSTAPRLEGCPYVLPSPNDPAKHLTFGEHYG 314 Query: 271 IWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR-- 328 W + + + HG+R S T A++G M G KTV Y D+ Sbjct: 315 GWCRTLKAASVPHVGTHGIRHRSTTDIANSGVPTKVGMKLTGHKTVAMFMHYVHTEDKPV 374 Query: 329 ---------IRLGIKNSRRISSVVD 344 R I +R+++ V Sbjct: 375 REAAELVASRRQAITGARQLAEAVA 399 >gi|311064016|ref|YP_003970741.1| integrase/recombinase [Bifidobacterium bifidum PRL2010] gi|310866335|gb|ADP35704.1| Integrase/recombinase [Bifidobacterium bifidum PRL2010] Length = 334 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 51/300 (17%), Positives = 100/300 (33%), Gaps = 60/300 (20%) Query: 85 GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGV--ESRKHTPSSAIQFLTS 139 L+ N+ ++ + + + G D R++TT +R + E+R H SS + + S Sbjct: 18 RGLSDNTVKAYGTDVRECLHALASRGIADLRQVTTDDLRGWMAFETRDHARSSMARKVVS 77 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ------------------ 181 +R F WA + +P + PK T+ ++ Sbjct: 78 VRSFFAWAHEHGRIEADPAAVLMTPKLPDTLPSVLTEAQAERLMDRVDDDASLHAASSQR 137 Query: 182 FKSFWSE--------------------GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI 221 +++ E + E L +G+R ++ + + + Sbjct: 138 YETRHDEMPRLDSAHRGEGMSQRDEVVALRDAAMLELLYATGIRVAELVGLDIGDVDWSH 197 Query: 222 FSIK-TQKTGTIITVELPDGFMKLLA---------------MTPIGKETFFINNDKQKMN 265 +I+ T K V D K LA + F+ ++++ Sbjct: 198 RTIRVTGKGSKQRVVPFGDPAEKALAGWKEHGRPLILRRAGAGTLDTAALFLGMRGRRID 257 Query: 266 ATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 A ++GV + S H +R +AT D GA E+ G ++ + YT Sbjct: 258 QRIVRDVVHRAARESGVPDISPHSLRHSAATHMLDGGADLREVQEMLGHSSLRTTQRYTH 317 >gi|294625642|ref|ZP_06704265.1| tyrosine recombinase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|294666817|ref|ZP_06732050.1| tyrosine recombinase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292600065|gb|EFF44179.1| tyrosine recombinase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292603401|gb|EFF46819.1| tyrosine recombinase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 305 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 32/219 (14%), Positives = 71/219 (32%), Gaps = 11/219 (5%) Query: 117 KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176 + + R + S + L++ R + W ++ ++ +P ++ PK + + Sbjct: 63 RQFVAAEHRRGLSAKSLQRRLSACRSYYAWLLKHGRISASPAAALRAPKAPRKLPQVLDA 122 Query: 177 EDMQQFKSF---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTI 232 ++ + G + R E SGLR S+ C + L ++ + K Sbjct: 123 DEAVRLVEVPTDAPLGLRDRALLEVFYSSGLRLSELCALRWRDLDLDSGLVMVLGKGSKQ 182 Query: 233 ITVELPDGFMKLLA-----MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKS 285 V + + L F ++ I K A + G+ + Sbjct: 183 RLVPVGSHAIAALREWRRDSGASADSHVFPGRAGGAISQRAVQIRIKQLAVRQGMFKDVH 242 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R A+ ++ + G + + YT Sbjct: 243 PHMLRHSFASHILESSGDLRGVQELLGHSDIATTQIYTH 281 >gi|218263976|ref|ZP_03477907.1| hypothetical protein PRABACTJOHN_03597 [Parabacteroides johnsonii DSM 18315] gi|218222387|gb|EEC95037.1| hypothetical protein PRABACTJOHN_03597 [Parabacteroides johnsonii DSM 18315] Length = 382 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 61/303 (20%), Positives = 115/303 (37%), Gaps = 42/303 (13%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFES-------YFDQIIRK------------SGDFDYR 112 WL S A ++ ++ S Y + R+ G D+ Sbjct: 85 DWLADHIEGIRRNPSYAASTYRNYRSTVNVIKAYLQHLRRQRLLMSKIDKGFVLGFIDFI 144 Query: 113 KITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE--- 169 + T ++ +S ++ +P + + +++ + AV++ + NP S+ER R + Sbjct: 145 EHTYRNTKSPDNPKEMSPHTLHLYQSTLVRMLNAAVKEGVLDRNPFYSLERKDRIGKQQA 204 Query: 170 GIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIK 225 TKE++ F + + AF F ++GLR SD + ++ + S+K Sbjct: 205 EKEYLTKEELMAFAEAPTVNETTKRAFLFCCFTGLRYSDVSALTWRDIRQGDNGWMVSVK 264 Query: 226 T-QKTGTIITVELPDGFMKLLA----MTPIGKETFFINNDKQKMNATQFSIWFKAKATKA 280 QKTG + + L + LL P K F + + + K A A Sbjct: 265 AMQKTGKQVVIPLNQSAISLLPDRNGCKPSQK-VFDMT------CLSSCNKCLKKIAAAA 317 Query: 281 GVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRR 338 G+ K S H R A ++ AG + + G +++ + Y + ++ R Sbjct: 318 GIEKKISYHTSRHTFAVLALAAGGDIYTVGKLLGHTSINSTQVYADAVMETK--VEAISR 375 Query: 339 ISS 341 ISS Sbjct: 376 ISS 378 >gi|90578175|ref|ZP_01233986.1| hypothetical protein VAS14_14029 [Vibrio angustum S14] gi|90441261|gb|EAS66441.1| hypothetical protein VAS14_14029 [Vibrio angustum S14] Length = 296 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 44/271 (16%), Positives = 92/271 (33%), Gaps = 18/271 (6%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKHT 129 +L ++ + ++ +I + D +TT ++ + H+ Sbjct: 10 DYLYEQHLIHLTLQGKRPATIDAYSRALRRITHQL-DKSPDTLTTDDLKRYFTQLIKTHS 68 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 S+ ++ FK +++++ +N + +P T ++ + S+ Sbjct: 69 WSTVKINRNGLQFFFKHVLQRDWEWLN----IVKPPHVKTLPDILTPTEVSLLINATSQ- 123 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF--SIKTQKTGTIITVELPDGFMKLLA- 246 + ++ F L GLR + V ++ ++ I+ K G + LP + L Sbjct: 124 LRYQVFFLTLYSLGLRLGEGLNLTVGNIDSHRMLVHIRQGKGGKDRFIPLPRRTLYALRY 183 Query: 247 --MTPIGKETFF---INNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISAD 299 T F N + M+ KA G+ KS H +R AT + Sbjct: 184 YWQTHKNSHYLFPSQFNVNHTVMDRGGVQKAMKAVIKSCGITKSISPHNLRHSYATHLLE 243 Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIR 330 G + G +++ YT D R Sbjct: 244 RGLDLRSVQHLLGHNSLNTTAKYTHLTDISR 274 >gi|224540991|ref|ZP_03681530.1| hypothetical protein CATMIT_00142 [Catenibacterium mitsuokai DSM 15897] gi|224526090|gb|EEF95195.1| hypothetical protein CATMIT_00142 [Catenibacterium mitsuokai DSM 15897] Length = 417 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 41/269 (15%), Positives = 87/269 (32%), Gaps = 30/269 (11%) Query: 85 GSLAVNSRISFESY----FDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSSAIQFLTS 139 L+ +++ + D + +K G D I + + + + Q + Sbjct: 127 TELSKSTKKHYIRISLIFLDYLNQK-GITDVSYIDLSICNDYIRTFTGMSFKTIEQHICG 185 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPK--RKTEGIRPWTKEDMQQFKSFW----SEGSQPR 193 +R ++ + + + + P + T+ WT++++++ G + Sbjct: 186 LRYFLRYLNEENVLESDVASLIHMPAISKSTKIPSVWTEDEIKKLLQAIDRNSPIGKRDY 245 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDGFM-KLLAMTPI 250 GLR SD + + SI KT +T+ +PD ++ Sbjct: 246 AMIVLACILGLRISDIKNLKFDNFNWEEKKLSIIQHKTKKPLTLPIPDAVGWAVIDYIKN 305 Query: 251 GKET-----FFINNDKQKMNATQ----FSIWFKAKATKAGV------NKSAHGVRKFSAT 295 G+ F + S KA + ++ H +R SA+ Sbjct: 306 GRPKYYESKFIFLKHMPPFGSLSDENHLSDRIHFYMKKAKIPLNKNCHRGFHSLRHTSAS 365 Query: 296 ISADAGATAHELMATYGWKTVDQAETYTK 324 + DAG + + G + D Y K Sbjct: 366 MLLDAGVELPVITSILGHSSTDITSIYLK 394 >gi|220931210|ref|YP_002508118.1| phage integrase family protein [Halothermothrix orenii H 168] gi|219992520|gb|ACL69123.1| phage integrase family protein [Halothermothrix orenii H 168] Length = 391 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 42/301 (13%), Positives = 105/301 (34%), Gaps = 48/301 (15%) Query: 87 LAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR----------KHTPSSAIQ 135 LA ++ +++ + + G+ + + + ++ + + +P + Sbjct: 85 LAYSTYRNYKVMINNHLADDIGETKLKDLKARQVQELLNDKLEKGKVYGEGGLSPRTVKY 144 Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG-IRPWTKEDMQQFKSFWSEGSQPRL 194 +++ + AV++ + N C +VE PK++ E + W K+ + F + L Sbjct: 145 IYSTLHTALEQAVKENMIPRNICKAVEVPKKQEEKKLHTWNKKQVNIFLKAARDYKYFIL 204 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQ---------------NNIFSIKTQKTGTI-ITVELP 238 + L +G+R + + + + K KT + T+ + Sbjct: 205 HY-LALNTGMRRGELLGLQWKDIDMEKKRIEVKRQLARTDEGLIFKKVKTKSGNRTIPIT 263 Query: 239 DGFMKLLAMTPIG---------------KETFFINNDKQKMNATQFSIWFKAKATKAGVN 283 D ++ L I + N ++ FK + G+ Sbjct: 264 DNVVRELKRHQIKQGEKRLALGEAYNKKADLVASNGIGNPIDPRNLVRDFKDIIEETGLP 323 Query: 284 K-SAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGADRIRLGIKNSRRISS 341 + H +R AT+ +A L G ++ +TY+ + + I+ R++ + Sbjct: 324 EIRYHDLRHTFATLFLEAKGPIKTLQQILGHSSITVTIDTYSHVTE--EMLIEAERKMET 381 Query: 342 V 342 + Sbjct: 382 M 382 >gi|86141512|ref|ZP_01060058.1| tyrosine type site-specific recombinase [Leeuwenhoekiella blandensis MED217] gi|295133678|ref|YP_003584354.1| tyrosine type site-specific recombinase [Zunongwangia profunda SM-A87] gi|85832071|gb|EAQ50526.1| tyrosine type site-specific recombinase [Leeuwenhoekiella blandensis MED217] gi|294981693|gb|ADF52158.1| tyrosine type site-specific recombinase [Zunongwangia profunda SM-A87] Length = 388 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 40/274 (14%), Positives = 90/274 (32%), Gaps = 29/274 (10%) Query: 76 SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT-TKHIRSGVESRKHTPSSAI 134 Y+ ++ + + + + F+ I K + +++ T S+ Sbjct: 104 ERYQTKGNYDNWDAA-----QKHLENYCPNHISFNEVDIDFIKGFKKYLDTVAVTKSNKN 158 Query: 135 -------QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + + + A + Y+ N V+ T +++++ Sbjct: 159 LSQNTKHTYFNKFKAAMRAAFEEGYLKENLIAKVKGFAMGESKREYLTSDELKRLAKTPC 218 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----------IFSIKTQKTGTIITVEL 237 + AF F +G+R SD + +++ K +KT + + + Sbjct: 219 NIQVFKDAFLFSALTGIRWSDIHKLTWSEVRDEGIDKSDNEIFRIVFKQKKTEGMEYLYI 278 Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSAT 295 +LL K+ F N + ++ AG++K + H R +A Sbjct: 279 SKQARRLLGKRSEPKDRVFTNLR----YSAYMNLQLLRWCMAAGISKHITFHSARHTNAV 334 Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 + + GA + + G K + E Y K D+ Sbjct: 335 LLLENGADIYTVSKRLGHKEIRTTEIYAKIIDKK 368 >gi|323138655|ref|ZP_08073722.1| integrase family protein [Methylocystis sp. ATCC 49242] gi|322396143|gb|EFX98677.1| integrase family protein [Methylocystis sp. ATCC 49242] Length = 420 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 48/260 (18%), Positives = 90/260 (34%), Gaps = 21/260 (8%) Query: 109 FDYRKITTKHIRSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166 +IT + ++ P A + L+ + L +WAV + VA NPC + +P + Sbjct: 149 RRLSEITRADVHELLDGLIDRGAPVQANRLLSYLNKLCRWAVSRGIVAHNPCDGIGKPSQ 208 Query: 167 KTEGIRPWTKEDMQQF-KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK 225 + R +++ ++ G L+ +G R S+ A + + + Sbjct: 209 EKSRDRVLDDHELRLVWRAAGELGWPFAPIIRLLILTGQRKSEVAEATWSEFDLDARAWR 268 Query: 226 ----TQKTGTIITVELPDGFMKLLAMTPI---GKETFFINNDKQKMNATQFSIWFKAKAT 278 K + TV L + LL P + F K ++ + A Sbjct: 269 IPPERVKNKRLHTVPLSPQAVALLKNLPRIQSASDLVFTTTGKTSVSGFSRAKRNIDVAV 328 Query: 279 K---AG---VNKSAHGVRKFSATISADAGATAHELMATYGWKTVD---QAETYTKG--AD 327 K AG + H +R+ +A+ A GA H + + Y + AD Sbjct: 329 KVLNAGTQIPAWTIHDLRRSAASGLAKNGAELHVIERVLNHVSGAFAGVVGVYQRHTFAD 388 Query: 328 RIRLGIKNSRRISSVVDSDD 347 +R + R + S+ Sbjct: 389 EMRAALDAWGRHIEQITSEK 408 >gi|310287153|ref|YP_003938411.1| Integrase/recombinase XerC [Bifidobacterium bifidum S17] gi|309251089|gb|ADO52837.1| Integrase/recombinase XerC [Bifidobacterium bifidum S17] Length = 334 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 51/300 (17%), Positives = 100/300 (33%), Gaps = 60/300 (20%) Query: 85 GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGV--ESRKHTPSSAIQFLTS 139 L+ N+ ++ + + + G D R++TT +R + E+R H SS + + S Sbjct: 18 RGLSDNTVKAYGTDVRECLHALASRGIADLRQVTTDDLRGWMAFETRDHARSSMARKVVS 77 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ------------------ 181 +R F WA + +P + PK T+ ++ Sbjct: 78 VRSFFAWAHEHGRIEADPAAVLMTPKLPDTLPSVLTEAQAERLMDRVDDDASLHAASSQR 137 Query: 182 FKSFWSE--------------------GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI 221 +++ E + E L +G+R ++ + + + Sbjct: 138 YETRHDEMPRLDSAHRGEGMSQRDEVVALRDAAMLELLYATGIRVAELVGLDIGDVDWSH 197 Query: 222 FSIK-TQKTGTIITVELPDGFMKLLA---------------MTPIGKETFFINNDKQKMN 265 +I+ T K V D K LA + F+ ++++ Sbjct: 198 RTIRVTGKGSKQRVVPFGDPAEKALAGWKEHGRPLILRRAGAGTLDTAALFLGMRGRRID 257 Query: 266 ATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 A ++GV + S H +R +AT D GA E+ G ++ + YT Sbjct: 258 QRIVRDVVHRAARESGVPDISPHSLRHSAATHMLDGGADLREVQEMLGHSSLRTTQRYTH 317 >gi|319644101|ref|ZP_07998650.1| hypothetical protein HMPREF9011_04253 [Bacteroides sp. 3_1_40A] gi|317384343|gb|EFV65312.1| hypothetical protein HMPREF9011_04253 [Bacteroides sp. 3_1_40A] Length = 381 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 44/210 (20%), Positives = 80/210 (38%), Gaps = 19/210 (9%) Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVER--PKRKTEGIRPW-TKEDMQQFKSF---WSE 188 + ++ AVR++ + NP +E+ RK E +R + T E++Q E Sbjct: 165 NYYRALNGALNSAVRKKKMKANPFNELEKSEKIRKPESMRSYMTIEEVQALIDTPMPHEE 224 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT----QKTGTIITVELPDGFMKL 244 + A+ F + GLR SD + + + + +KT I + L +K Sbjct: 225 YEIVKCAYLFSCFCGLRISDIIKLKWSDVFVDRGQYRLAVSMKKTKEPIYLPLSPEALKW 284 Query: 245 L--AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300 + ++ F +A + K A AG++K S H R AT+ Sbjct: 285 MPERGGKSSEDNVFDL-----PSANTIRMQLKPWAKAAGISKRFSYHTSRHTFATMMLTL 339 Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIR 330 GA + + G V + Y K ++ + Sbjct: 340 GADLYTVSKLLGHADVKMTQVYAKIINKKK 369 >gi|315080448|gb|EFT52424.1| site-specific recombinase, phage integrase family [Propionibacterium acnes HL078PA1] Length = 420 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 58/373 (15%), Positives = 115/373 (30%), Gaps = 51/373 (13%) Query: 23 YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSA 82 +Y + G +R+R + L PR TL ++ + + Sbjct: 27 FYDKNGTKQRVRGRGATRAEATKRLNKNLRQRIDGTRTATGPRGGL-TLNQWVNIWLATK 85 Query: 83 HWGS-LAVNSRISFE-SYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA-IQFLTS 139 + + + Y I K G +++T + I+ + + + + + Sbjct: 86 QASEQMKPQTAQQHKIRYKQWIAPKLGSRPVKRLTAEEIQEVIAAGAQQGHAIPVNIFKT 145 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEG-------IRPWTK--EDMQQFKSFWSEGS 190 M AV+ V +NP + P++++ I W++ + M ++ + Sbjct: 146 MNAALNSAVKAGEVDLNPMKQLTPPRQRSAAGEKDTAHIEYWSRIMDKMCKWLAQPECEL 205 Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQ---------------KTGTII 233 R + GLR ++ N +IK Q KTG Sbjct: 206 HDRYTLTIAMLLGLRRAELLGLTWDCFDECMNKLTIKQQLMRQNDGSYIIQNSTKTGKNR 265 Query: 234 TVELPDGFMK---------LLAMTPIGKETFFINNDKQKMNATQFSIWFKA----KATKA 280 T+ LP+ + + L A P F+ + ++ ++ K Sbjct: 266 TLMLPERWKEAFLLQRQKSLTAAAPEWNNLVFLTPAGGPITYPMYNKLWRNTIVTYMAKE 325 Query: 281 GVNK-------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT-KGADRIRLG 332 G H RK A+ A G M+ G + YT AD+ R Sbjct: 326 GQEWKEEQHYWRPHTCRKMCASWLAWGGVDIQTAMSILGHSSEAMTLYYTIINADQQRKA 385 Query: 333 IKNSRRISSVVDS 345 ++ + + Sbjct: 386 LEGLSNVYEHHNV 398 >gi|301647024|ref|ZP_07246858.1| site-specific recombinase, phage integrase family [Escherichia coli MS 146-1] gi|301074822|gb|EFK89628.1| site-specific recombinase, phage integrase family [Escherichia coli MS 146-1] Length = 401 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 45/274 (16%), Positives = 97/274 (35%), Gaps = 19/274 (6%) Query: 65 RKKPTTLKWLISEYRKSAHWGS---LAVNSRIS---FESYFDQIIRKSGDFDYRKITTKH 118 + + T+ + +Y K+ L R++ ++ + D + Sbjct: 33 KIRKMTISRALDKYLKTVSIHKKGHLQEFYRVNVIKRHPIAERYMDDITTVDIANYRDQR 92 Query: 119 IRSG--VESRKHTPSSAIQFLTSMRVLFKWA-VRQEYVAINPCLSVERPKRKTEGIRPWT 175 + R+ T ++ L + LF A V +NP V +PK + R T Sbjct: 93 LAQINPRTGRQITGNTVRLELALLSSLFNIARVEWGTCRMNPVELVRKPKISSGRDRRLT 152 Query: 176 KEDMQQFKSFWSEGSQP-RLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQKTGTI 232 + ++ ++ E +Q + F L + +R + +H+ + + T K G Sbjct: 153 SGEERRLSRYFKEKNQALYVIFHLALETAMRQGEILSLRWEHVDLQHGVAHLPTTKNGAP 212 Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRK 291 V L L M P +N + ++ F ++ + + N H +R Sbjct: 213 RDVPLSRKARNYLQMLPTQ-----LNGNIFSYTSSGFKSAWRTALQELKIENLHFHDLRH 267 Query: 292 FSATISADAG-ATAHELMATYGWKTVDQAETYTK 324 + + + G E+ A G ++++ + YT Sbjct: 268 EAISRFFELGTLNVIEVAAISGHRSLNMLKRYTH 301 >gi|218783046|ref|YP_002434364.1| integrase family protein [Desulfatibacillum alkenivorans AK-01] gi|218764430|gb|ACL06896.1| integrase family protein [Desulfatibacillum alkenivorans AK-01] Length = 408 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 60/377 (15%), Positives = 106/377 (28%), Gaps = 53/377 (14%) Query: 16 TRHGKIIYY--FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYI-NSPRKKPTTLK 72 R ++ Y+ +R G++ R A + + ++ T + Sbjct: 31 KRSKRVRYWIAYRLPGGKQRREAVGFSIEDARAAEGKRKAEKKENPRVLKKSPEETMTFE 90 Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKI----------------TT 116 L Y L R E G + I Sbjct: 91 DLAKWYLALPKVNGLKSFWR--IEMNLKTFNETFGKTKIKNIMAVDLEKFQVDGLAQGFK 148 Query: 117 KHIRSGVESRKHTPSS-------AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169 K R E +K +S Q LT R + A + V+ R K Sbjct: 149 KRTRGSKEEKKEGGASQPASQAYIDQILTVARTMINRAFDSDIVSGETVKVFRRVKNLQG 208 Query: 170 GI-----RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224 G R T ++ ++ + ++P Y+G+R + + I Sbjct: 209 GNANARDRVLTHDEFEKIMANLPAHAKP--IIATAYYTGMRSGEIFPLTWDRVDLKERVI 266 Query: 225 KTQ----KTGTIITVELPDGFMKLLAMTPIGKET--FFINNDKQKMNATQFSIWFKAKAT 278 + + K V + + ++L+ P T F+ + + + K A Sbjct: 267 RLEAADTKDKEPRVVPICNELYEVLSGLPRAIHTDNVFL-RYGEPI--KKLRNSLKEAAK 323 Query: 279 KAGVNK--------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY-TKGADRI 329 KAG+ + H R T AG +M G T + Y T AD Sbjct: 324 KAGIPFGRKVKNGFTFHDFRHTFNTNMRRAGVPESVIMKITGHSTRAMFDRYNTVDADDA 383 Query: 330 RLGIKNSRRISSVVDSD 346 + + VD + Sbjct: 384 KNAVNIMSSFLQPVDQN 400 >gi|54303359|ref|YP_133352.1| hypothetical protein PBPRB1692 [Photobacterium profundum SS9] gi|46916789|emb|CAG23552.1| hypothetical protein PBPRB1692 [Photobacterium profundum SS9] Length = 295 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 41/285 (14%), Positives = 90/285 (31%), Gaps = 21/285 (7%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKHTPS 131 L ++ + + ++ +I + +TT ++ S + H+ S Sbjct: 12 LYEQHLTNLTLQGKRPATIDAYSRAVRRISQFFDRCP-DAMTTADLKQYFASLIQTHSWS 70 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191 + ++ ++ + +E+ ++ + +P + + T + + S + Sbjct: 71 TVKLDRNGLQFFYRHTLEKEWQWLD----IVKPPQSKKLPDIITAQQVALLISMTK--QK 124 Query: 192 PRLAFEFLLYS-GLRCSDSCRAGVQHLQNNIF--SIKTQKTGTIITVELPDGFMKLLAM- 247 F LY+ GLR + V + + I+ K G V +P + L Sbjct: 125 RYQIFFLTLYTMGLRLGEGLSLTVHDIDQHTMQVHIRDGKGGKDRLVPVPQRTLNALRAH 184 Query: 248 -TPIGKETFFINNDK----QKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300 M+ K G+NK S H +R AT + Sbjct: 185 WLTHRHPRLIFPGKGCNTDNPMDRGGVQKAMKLVLKDCGINKPISPHSLRHGFATHLLEQ 244 Query: 301 GATAHELMATYGWKTVDQAETYTKGAD-RIRLGIKNSRRISSVVD 344 G L G +++ YT+ + R R++ + Sbjct: 245 GLDLRSLQILLGHASLNTTARYTRMTQIKQRDAALAINRLADALT 289 >gi|329729089|gb|EGG65500.1| site-specific recombinase, phage integrase family [Staphylococcus epidermidis VCU144] Length = 391 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 62/377 (16%), Positives = 129/377 (34%), Gaps = 57/377 (15%) Query: 23 YYFRKGHGRRI---RLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT--TLKWLISE 77 + +R G+ + Y ++ F + +R+ N P+ T K + + Sbjct: 12 WRYRISLGKNTETGKYEYISKTGFKRKSDAKHQAEMIERQLRNGDYIAPSSSTFKQVAED 71 Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA--IQ 135 + K + V+S + E I+ + I + V+ S Sbjct: 72 WIKQYA-NDVKVSSVRAREKAIQHAIQHFNTKPIQTIKKHDYQRFVDDMSIQYSKNYVDS 130 Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRK--------TEGIRP-WTKEDMQQFKSFW 186 + S ++FK+A + + + P ++RPK+K +E + K+++ QF Sbjct: 131 IVASTNMIFKYAYDMKLIRVLPIEGIKRPKKKVSVEELEDSEIHKKFLEKDELFQFLEVA 190 Query: 187 SEGSQPRLAFEF---LLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQ-------------- 227 P+ +FE L Y+G+R + + NN SI Sbjct: 191 KNHHSPQNSFEVFTTLAYTGMRAGELLALKWSDIDFENNTISITKTYYNPNNNKKHYQIL 250 Query: 228 --KTGTII-TVELPDGFMKLLAMTP------------IGKETFFINNDKQKMNATQFSIW 272 KT + I + + ++LL + F + + + + S W Sbjct: 251 TPKTESSIGKISVDPHVIQLLKDYKVNVQDTWKNELYVDNNFVFTDVNGYPLVIKKLSTW 310 Query: 273 FKAKATKAGV---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADR 328 +A K + + S H R + +AG E+ K ++ Y K + Sbjct: 311 IQAIMKKTDITNKHISTHSFRHTHCALLIEAGVHIKEIQERLRHKDINTTMNIYAKITNS 370 Query: 329 IRLGIKNSRRISSVVDS 345 + S++ S ++++ Sbjct: 371 YKK--DASQKFSKLMEN 385 >gi|320161829|ref|YP_004175054.1| putative site-specific recombinase [Anaerolinea thermophila UNI-1] gi|319995683|dbj|BAJ64454.1| putative site-specific recombinase [Anaerolinea thermophila UNI-1] Length = 292 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 40/277 (14%), Positives = 91/277 (32%), Gaps = 32/277 (11%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQII--------RKSGDFDYRKITTKHIRSGVES- 125 + ++ + + + + + G + + R +++ Sbjct: 4 LEQFEVWLQEQDRSPVTVRGYMADLRAFAAWFEQTNGKALGVEEVTPADVREYRGWLQAV 63 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT---------EGIRPWTK 176 ++ ++ + L ++R +W V E + +P V+ P+ +T E R + Sbjct: 64 KRAGAATVRRHLMALRAYCRWGVETERIDRDPTARVKLPREETLSPGWLAKQEQYRLLRE 123 Query: 177 EDMQQFKSFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQK 228 + + + R FLL +GLR +++C V+ + ++ ++ K Sbjct: 124 AERAVSAADTPTRRRLAVRDRALVVFLLNTGLRIAEACALTVEDVQIGERSGWVVVRGGK 183 Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM--NATQFSIWFKAKATKAGVNKSA 286 V L + L + + + + +AGV Sbjct: 184 GNKSRKVPLNVEVRRALNAWREERG----DGEGSVFDLTPSGAYRRLVEMGRRAGVEVHP 239 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 H +R A DAG HE+ A G +++ Y Sbjct: 240 HTLRHTLAKNLVDAGVGLHEVAALLGHSSLNTTRVYV 276 >gi|317055405|ref|YP_004103872.1| integrase family protein [Ruminococcus albus 7] gi|315447674|gb|ADU21238.1| integrase family protein [Ruminococcus albus 7] Length = 396 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 57/317 (17%), Positives = 103/317 (32%), Gaps = 53/317 (16%) Query: 76 SEYRKSAHWGSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIRSGVESRKH---- 128 ++ + +L + +E +I G KIT + I++ V S Sbjct: 74 EQWFEEYAKPNLRNTT---YERMLQLRGRIYPALGHMRMDKITPRQIQAFVNSLSREGAN 130 Query: 129 -------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 P + L+ + +F +AV+ V NPC V PK + +T E +Q+ Sbjct: 131 ERTGKPLAPKTIRHNLSFVSDVFSYAVKMGVVNDNPCSKVTLPKNNQAEKKIYTPEQVQR 190 Query: 182 FKSFW-SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKT--------- 229 F + E + R F +++SG R + + + +NI SI+ Sbjct: 191 FLTLLNDEPLKYRTFFNLMIFSGFRRGEMLGLEWKDVDFEHNIISIRRTSNYTGRKGTYT 250 Query: 230 ------GTIITVELPDGFMKLLAMTP--------------IGKETFFINNDKQKMNATQF 269 + T++ P M +L + + + + M Sbjct: 251 DTTKTKKSQRTLKFPQEIMDMLREYKDEQDMQALKCGDKWVETDRLYTKWNGLPMQNGTP 310 Query: 270 SIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGAD 327 W K + H R A++ + G + G TV Y D Sbjct: 311 YFWLGEFCEKHDLPFYGLHSFRHLFASLLVNQGVDIVTVSGALGHSTVSTTSNIYCHMLD 370 Query: 328 RIRLGIKNSRRISSVVD 344 R K S +S+ +D Sbjct: 371 EAR--AKVSEAVSAALD 385 >gi|295105295|emb|CBL02839.1| Site-specific recombinase XerD [Faecalibacterium prausnitzii SL3/3] Length = 341 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 36/270 (13%), Positives = 86/270 (31%), Gaps = 26/270 (9%) Query: 86 SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS---MRV 142 ++A ++ S++ + I I + ++ + S + + Sbjct: 60 NIAPTTQESYKYCLKMLKEGFYHRPLTVIRPIDIENFLKGMRRDGRSDSYISKARGMLYQ 119 Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIR--PWTKEDMQQFKSFWSEGSQPRLAFEFLL 200 +F+ A + V NP E+ + R +T ++ + + L+ LL Sbjct: 120 IFQKAEANDLVRRNPVRLAEKMRASGTAKRKEAFTTAEVAHLMKVLPD-DRMGLSIRLLL 178 Query: 201 YSGLRCSDSCRAGVQHL--QNNIFSIKT--------------QKTGTIITVELP-DGFMK 243 +G+R + Q + ++ I+ + +I + +P + Sbjct: 179 GTGMRMQELLALEPQFIEEDGSVIHIRQAVKVVKGTVSIGSPKSKDSIRDIPVPLNVRPC 238 Query: 244 LLAMTPIGKETFFIN-NDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300 + + + + + N T F F+ +AG + + H R + Sbjct: 239 AIKLRDTTDQFIWESPKTGLPCNPTHFRDVFRKSLEEAGDVRLLTPHSCRHTYVSQMQAL 298 Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIR 330 G + + G + E Y + IR Sbjct: 299 GVDIQTIQSIVGHADTEMTEHYLHVQESIR 328 >gi|92116109|ref|YP_575838.1| tyrosine recombinase XerD [Nitrobacter hamburgensis X14] gi|91799003|gb|ABE61378.1| tyrosine recombinase XerD subunit [Nitrobacter hamburgensis X14] Length = 319 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 43/279 (15%), Positives = 86/279 (30%), Gaps = 38/279 (13%) Query: 89 VNSRISFESYFDQIIR---KSGDFDYRKITT--KHIRSGVESRKHTPSSAIQFLTSMRVL 143 N+ ++ + + + G T + ++ R SS + L++MR L Sbjct: 27 DNTLDAYRRDLEDLSAFLTRVGQTFVTAGTQTLRDYLGDLDVRGFKSSSVARRLSAMRHL 86 Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW------SEGSQPR---- 193 F++ + + + +P + PKR + + D+ + + + S R Sbjct: 87 FRFLLSERIRSDDPAAILSGPKRGRSLPKVLSIADVDRLLACAKAAMETPDASPARRLRA 146 Query: 194 ----LAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELP--------DG 240 E L +GLR S+ + + + + K V L D Sbjct: 147 ARLYCLLEVLYATGLRVSELVSLPLSAARRDARMIVVRGKGNKERLVPLNEASRQAMADY 206 Query: 241 FMKLLAMTPIGKET-----FFINNDK--QKMNATQFSIWFKAKATKAGVN---KSAHGVR 290 + K + + + F+ K A AG+ S H +R Sbjct: 207 LAAMADRRGADKAVAVQPKWLFPSFGESGHLTRQHFARELKELAAAAGLAPRLVSPHVLR 266 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 A+ GA + G + + YT + Sbjct: 267 HAFASHLLHNGADLRIVQTLLGHTDISTTQIYTHVVEER 305 >gi|221133384|ref|ZP_03559689.1| Tyrosine recombinase xerC [Glaciecola sp. HTCC2999] Length = 383 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 57/347 (16%), Positives = 100/347 (28%), Gaps = 33/347 (9%) Query: 7 LPPFVTKE--RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP 64 LP E +T G Y FR + L + + A A P + P Sbjct: 30 LPKGFRIEIRKTSKGIGTYRFRTKV-KDHNLGRTNALSLEQALQQA-AQLIPSPTPPHIP 87 Query: 65 RKKPT---------TLKWLISEYRKSAHWGSLAVNSRISF---ESYFDQIIRKSGDFDYR 112 P TL +Y W + R + +I G Sbjct: 88 LSPPIAQASPTCTFTLNEFWEQYY----WPHIKTRLRTCRNIESMWRIRIQPTFGHQRLD 143 Query: 113 KI---TTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169 I + ++ + + + S + + +F A++ E + NPC VE K + Sbjct: 144 DIKVLELERFQTSLIEMQLSGSHVTGHIKLLSRMFTLAIQWELITKNPCDKVEYMKFDNQ 203 Query: 170 GIRPWTKEDMQQFKSF---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226 R + ++ +F S E L L+ +G+R + + I Sbjct: 204 KERFLSSDEQTRFISVLMEHPERPVNLLMIFLLV-TGVRSGVAKSLRWSWINMEKQIITV 262 Query: 227 ----QKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282 K T+ L M +L T+ N ++ F FK A + Sbjct: 263 PPSIAKNKKQNTIFLNTTAMDILKRLAGINPTYVFINPMTQLPYNDFKKSFKTALKAAQI 322 Query: 283 NKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 + S H +R + + + Y K + Sbjct: 323 SDSVRIHDLRHTFCSNLVSNNVSLASVQQLANHACYSTTLRYAKVSQ 369 >gi|303257603|ref|ZP_07343615.1| putative integrase/recombinase [Burkholderiales bacterium 1_1_47] gi|302859573|gb|EFL82652.1| putative integrase/recombinase [Burkholderiales bacterium 1_1_47] Length = 358 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 61/311 (19%), Positives = 110/311 (35%), Gaps = 46/311 (14%) Query: 56 PKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT 115 + E ++ R TL LI EY A + + K IT Sbjct: 43 AELELGSAERSSQITLSALIDEYIVEATSQKRSKRTEEIRLRRLQ--RDKLATRALSSIT 100 Query: 116 TKHIRSGVESR----------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK 165 K I + +E R +PS+ + LT + +F++A++ E +NPC VE+P+ Sbjct: 101 KKTIENYIERRLQERAKNRDSNISPSTVNRELTILSDVFQYAIKNELTDVNPCRGVEKPR 160 Query: 166 RKTEGIRPWTKEDMQQFKSF--WSEGSQPR-------LAFEFLLYSGLRCSDSCRAGVQH 216 R + ED+++ W + P+ AF F +G+R + + Sbjct: 161 EPEHRERVASGEDIEKLLLACGWDGHTVPKNKMQLAVAAFLFSCQTGMRAGELLKIEYSW 220 Query: 217 LQNNIFSIKTQ--KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFK 274 + +N+ + + KT + V L ++L + E + +N F+ Sbjct: 221 IDDNVLHVPAEATKTLSRRDVALSARAREILKLV---MELEYEPRIFGGLNDHNRDTLFR 277 Query: 275 AKATKAGV-------------NKSAHGVRKFSATISA----DAGA---TAHELMATYGWK 314 +AG+ + H R AT +A + GA L G K Sbjct: 278 KVRDRAGLGPEYDSQNRLIKEGLNFHDGRATFATWAASPDPETGAPRLDVLALARQTGHK 337 Query: 315 TVDQAETYTKG 325 + + Y + Sbjct: 338 DLKMLQRYYRA 348 >gi|255320348|ref|ZP_05361532.1| site-specific recombinase XerC [Acinetobacter radioresistens SK82] gi|262379369|ref|ZP_06072525.1| tyrosine recombinase XerC [Acinetobacter radioresistens SH164] gi|255302543|gb|EET81776.1| site-specific recombinase XerC [Acinetobacter radioresistens SK82] gi|262298826|gb|EEY86739.1| tyrosine recombinase XerC [Acinetobacter radioresistens SH164] Length = 306 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 42/278 (15%), Positives = 90/278 (32%), Gaps = 27/278 (9%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGV----ESRK 127 L+S + K + + ++ ++ + I +R + E + Sbjct: 8 LLSMWLKEREIQNQSAHTLSAYARDVKDFLDFCAVKKLPLNSIEASDLREYLALKVEREQ 67 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + SS + L+++R KWA + +Y+ NP + ++ E +QQ + Sbjct: 68 LSSSSLQRHLSAIRQFMKWAEQGQYLGFNPADDFQLKRQPRPLPGMIDIETVQQILDQPA 127 Query: 188 EG--------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---- 235 + + E L SGLR ++ ++ + N ++ G + Sbjct: 128 PEKLQDQHLWLRDKAMLELLYSSGLRLTELQSLCMKDIDFNRRLLRITGKGNKTRIVPFG 187 Query: 236 -----ELPDGFM--KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG--VNKSA 286 L +L FI+ ++ Q K +A +AG ++ Sbjct: 188 TQAYESLLKWLEVYRLWQGQFNADSAVFISQKGGQLGPRQIENRVKLQALRAGVNIDLHP 247 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R A+ + G + + YT Sbjct: 248 HLLRHCFASHMLSNSGDLRAVQEMLGHSNLSTTQIYTH 285 >gi|253571052|ref|ZP_04848460.1| integrase [Bacteroides sp. 1_1_6] gi|251840001|gb|EES68084.1| integrase [Bacteroides sp. 1_1_6] Length = 381 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 44/210 (20%), Positives = 80/210 (38%), Gaps = 19/210 (9%) Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVER--PKRKTEGIRPW-TKEDMQQFKSF---WSE 188 + ++ AVR++ + NP +E+ RK E +R + T E++Q E Sbjct: 165 NYYRALNGALNSAVRKKKMKANPFNELEKSEKIRKPESMRSYMTIEEVQALIDTPMPHEE 224 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT----QKTGTIITVELPDGFMKL 244 + A+ F + GLR SD + + + + +KT I + L +K Sbjct: 225 YEIVKCAYLFSCFCGLRISDIIKLKWNDVFVDRGQYRLAVSMKKTKEPIYLPLSPEALKW 284 Query: 245 L--AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300 + ++ F +A + K A AG++K S H R AT+ Sbjct: 285 MPERGGKSSEDNVFDL-----PSANTIRMQLKPWAKAAGISKRFSYHTSRHTFATMMLTL 339 Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIR 330 GA + + G V + Y K ++ + Sbjct: 340 GADLYTVSKLLGHADVKMTQVYAKIINKKK 369 >gi|319407796|emb|CBI81447.1| integrase/recombinase XerC [Bartonella sp. 1-1C] Length = 321 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 39/262 (14%), Positives = 81/262 (30%), Gaps = 25/262 (9%) Query: 88 AVNSRISFESYFDQIIRKSGDFD----YRKITTKHIRSGVESRK---HTPSSAIQFLTSM 140 AV + + + G + +R+ + R+ + S + + S+ Sbjct: 43 AVAYERDTRQFLFFLCQHLGYQPALNDLADLHVADLRAYLAYRRTQNISARSLSRNMASL 102 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE-------DMQQFKSFWSEGSQPR 193 R F + R++ V + V PK + +P T E + Q ++ ++ Sbjct: 103 RSFFNYLSREKLVNVPAAKLVRTPKHRKSLPKPLTIESALRIVKEENQQETEPWIIARNT 162 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI--KTQKTGTIITVELPDGFMKL----LAM 247 L G+R S++ + + T K G + L K L Sbjct: 163 AILILLYGCGMRISEALALTPEQFADPSIKSLSVTGKGGKTRLIPLIPIVHKAIENYLKC 222 Query: 248 TP---IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGA 302 P + + F+ + + + G+ ++ H +R AT G Sbjct: 223 CPYPLVNTQPIFLGVRGKPLQPAIIQRAVQNLRAHLGLPETTTPHALRHSFATHLLSRGG 282 Query: 303 TAHELMATYGWKTVDQAETYTK 324 + G + + YT Sbjct: 283 DLRTIQELLGHACLSTTQVYTH 304 >gi|317481431|ref|ZP_07940498.1| phage integrase [Bacteroides sp. 4_1_36] gi|316902416|gb|EFV24303.1| phage integrase [Bacteroides sp. 4_1_36] Length = 385 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 55/316 (17%), Positives = 110/316 (34%), Gaps = 39/316 (12%) Query: 55 TPKREYINSPRKKPTTLKWLISEYRKS-------AHWGSLAVNSRISFESYFDQIIRKSG 107 K++ + K T +Y + R E+Y + + Sbjct: 70 EKKQKTEENEAAKTMTWLQWCDDYVRCAMLDGNCPKMIQHKDVVRRRIETYLKRAKKT-- 127 Query: 108 DFDYRKITT----------KHIRSGVESRKHTPSSAIQFL----TSMRVLFKWAVRQEYV 153 D + + ++ R+ + + + A L +++ +F AVR + Sbjct: 128 DVLLKDVDRDLVSGLFGYMRNYRNRKQIKANGGRLAAYTLVLFEETVKAIFNKAVRDGLM 187 Query: 154 AINPCLSV---ERPKRKTEGIRPWTKEDMQQFKSFWSE---GSQPRLAFEFLLYSGLRCS 207 A NP + ER + T +++++F + + + AF F +GLR Sbjct: 188 ASNPVQELTREERFHAPDKHREYLTADELKRFLAVEPQTYMEEVVQRAFGFSCMTGLRLG 247 Query: 208 DSCRAGVQHLQN----NIFSIKTQKTGTIITVELPDGFMKLLAMTP-IGKETFFINNDKQ 262 D R +++ S+ KT + V L + LL P G++ K+ Sbjct: 248 DMQRLRWSDIKDVNGVQTVSVIQHKTKRPVAVPLNALALSLLPPRPENGEDGIIFPLVKK 307 Query: 263 KMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAE 320 + + + KAG+ K H R +AT++ AGA + + G ++ + Sbjct: 308 P---DNVAKYVRRIKDKAGIEKDFTYHSSRHSAATLAITAGAELYSVSKILGHGSIASTQ 364 Query: 321 TYTKGADRIRLGIKNS 336 Y K ++ N Sbjct: 365 VYAKVKMEKKVEAMNL 380 >gi|160875353|ref|YP_001554669.1| integrase family protein [Shewanella baltica OS195] gi|160860875|gb|ABX49409.1| integrase family protein [Shewanella baltica OS195] gi|315267553|gb|ADT94406.1| integrase family protein [Shewanella baltica OS678] Length = 296 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 42/272 (15%), Positives = 87/272 (31%), Gaps = 18/272 (6%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KH 128 L ++ + + ++ +I D +TT ++ H Sbjct: 9 FDLLYEQHLTNLTLQGKRPATIDAYSRAIRRIAAYF-DCCPDTLTTDDLKRYFADLIASH 67 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 + S+ ++ + + + + +N + +P + T ++ S + Sbjct: 68 SWSTVKLDRNGLQFFYFHVLNKSWQWLN----IVKPPQVKHLPDILTPCEVAIVISLTRQ 123 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF--SIKTQKTGTIITVELPDGFMKLLA 246 + ++ F L GLR ++ V + + I+ K G V LP + L Sbjct: 124 -LRYQVCFLTLYSMGLRLGEAISLQVGDIDAGLMQVHIRDAKGGKDRLVPLPQRTLLALR 182 Query: 247 ---MTPIGKETFFINNDKQK---MNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISA 298 T F D Q M+ K + ++K S H +R AT Sbjct: 183 YYWRTHRHPHWLFPGKDNQPDSLMDRGGLQKAMKQVILECNIHKAISPHSLRHSYATHLL 242 Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRIR 330 + G + G +++ YT+ D R Sbjct: 243 EQGLDLRSVQTLLGHHSLNTTARYTRLTDITR 274 >gi|325270622|ref|ZP_08137220.1| phage integrase family integrase/recombinase [Prevotella multiformis DSM 16608] gi|324987017|gb|EGC19002.1| phage integrase family integrase/recombinase [Prevotella multiformis DSM 16608] Length = 330 Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 35/278 (12%), Positives = 93/278 (33%), Gaps = 13/278 (4%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG---DFDYRKITTKHIRSGVESRKHTP 130 L++ + + + + + S + ++ K D ++ E R + Sbjct: 55 LLNAFIAAKKIEGCSDKTLHYYRSSIEALLAKLNKKIDVIVTNDIRNYLSDYQEERLSSR 114 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 + F W ++Y+ +P + + + ++ + E+M+ + E Sbjct: 115 VTIDNLRRIFSSFFAWLEDEDYIGKSPVRRIHKVRTESLVKEVLSDENMEVLRDTCHE-I 173 Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDG----FMKLL 245 + + L +G+R + + + + + K V + L Sbjct: 174 RDLAMIDLLASTGMRVGELAKMNREDIDFQERQCVVFGKGNKEREVYFNARTKIHLKRYL 233 Query: 246 AMTPIGKETFF--INNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGA 302 F +++ ++ + + + KAG++K H R+ AT++ D G Sbjct: 234 ESRKDNNPALFVSLSSPHNRLTISGVEVRLRQLGRKAGISKVHPHKFRRTLATMAIDKGM 293 Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340 ++ G +D Y ++ + I + + I Sbjct: 294 PIEQVQKLLGHVKIDTTLHYA-MVNQTNVKIAHRKFIG 330 >gi|293568954|ref|ZP_06680267.1| phage integrase family protein [Enterococcus faecium E1071] gi|291588387|gb|EFF20222.1| phage integrase family protein [Enterococcus faecium E1071] Length = 378 Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 52/365 (14%), Positives = 113/365 (30%), Gaps = 55/365 (15%) Query: 15 RTRHGKIIYYFR--KGHGRRIRLPYPHE---STFIPAYMSALTGSTPKREY-INSPRKKP 68 R R + YYF G R ++ A L+ +Y + + + Sbjct: 6 RKRGKRWYYYFEDINDDGSRKKVEKVGGDTRPEAEAALRKVLSDIDETGQYFLGTDTRVK 65 Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESR- 126 L + + EY K +L N+ ++ + I G ++ +++ + + Sbjct: 66 QYLDFWMEEYVK----LNLKYNTYENYRFTIKNHIDGYLGKKKLTDLSPALLQNFINAEF 121 Query: 127 -----KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK-----TEGIRPWTK 176 K T + L + + + + NP L V+ PK + + ++ + Sbjct: 122 KKGYSKKTMTITHSVLKNALNMAVY--PWGLIKQNPMLYVKIPKYEERPTTKKDLKIISL 179 Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL----------------QNN 220 ED EG + Y+G+R + C ++ Sbjct: 180 EDFDHMLEITPEGHPFYIPLNIGFYTGMRVGEVCGLTWDNVDFSNGTTTVEKQMVKNDGA 239 Query: 221 IFSIKTQKTGTIITVELPDGFMKLLAMTP--------------IGKETFFINNDKQKMNA 266 + + + T+ + + +L I D + Sbjct: 240 WIYGTPKTSSSNRTIFIGQTLLAILKKHKKQQLENRMKYGKLYIDSNAVCTKEDGGLVTP 299 Query: 267 TQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKG 325 + K + ++ + H +R AT+ + GA E+ G + +TY+ Sbjct: 300 SVVKWNTKRISNALSLSFNFHSLRHTHATLLLENGAKMKEISERLGHSRISITMDTYSHV 359 Query: 326 ADRIR 330 D++R Sbjct: 360 TDKMR 364 >gi|304386123|ref|ZP_07368463.1| site-specific recombinase [Pediococcus acidilactici DSM 20284] gi|304327850|gb|EFL95076.1| site-specific recombinase [Pediococcus acidilactici DSM 20284] Length = 396 Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 56/314 (17%), Positives = 112/314 (35%), Gaps = 48/314 (15%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133 + +YR + +L ++ + ++ GD ++T + V S Sbjct: 88 WMEQYRLTVRESTL-EKTQRIIRVH---VLPAFGDMLIDQVTPNVCQRVVNKWFLEAKSY 143 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP----WTKEDMQQFKSFWSEG 189 ++L ++F +A+R EYV NPC V P+ + + WT++++ F + + Sbjct: 144 KKWLNYASMIFDYALRAEYVGRNPCTLVTMPRVQEQAGEKLENFWTRDELNTFFDYVTPE 203 Query: 190 S--QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-----------------G 230 + F L YSG+R + + + +++ KT Sbjct: 204 RDVEQFTMFRVLAYSGIRKGELLALTWKDINFEDNTLRVNKTLTQGLGGKLIVQPPKSRA 263 Query: 231 TIITVELPDGFMKLLAMTP-IGKETF--------------FINNDKQKMNATQFSIWFKA 275 T++L D M+ L + +ETF F +N + + W Sbjct: 264 GRRTIDLDDSTMRYLRQWKGVQRETFLGMGFNTNNVDQLVFASNRNHFRSMNTPTKWLNK 323 Query: 276 KATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA---ETYTKGADRIRL 331 G+ S HG R A++ +G E G D + + YT ++ + Sbjct: 324 AIKATGLKHISIHGFRHTHASLLYQSGVGLKETQQRLGHSRADSSVTLDVYTHTTEQQNV 383 Query: 332 GIKNSRRISSVVDS 345 +R + V++ Sbjct: 384 A--ALQRFENYVEA 395 >gi|325288214|ref|YP_004264395.1| integrase family protein [Syntrophobotulus glycolicus DSM 8271] gi|324963615|gb|ADY54394.1| integrase family protein [Syntrophobotulus glycolicus DSM 8271] Length = 403 Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 60/298 (20%), Positives = 110/298 (36%), Gaps = 52/298 (17%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFD--YRKITTKHIRSGVES--- 125 KWLI ++A + +++ D +I R + D ++T +HI+ +S Sbjct: 93 KWLIQAK------PTIAKTTFKGYQTMLDGRISRYFTELDITLAEVTPQHIQDFHQSIFD 146 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 HTP++ I + +R + AV++E + NP V+RPK+ + ++ E+M Sbjct: 147 EGHTPNTVIHYHAVLRRALQNAVKKEIIGSNPADRVDRPKKNVYHAQFYSAEEMMALFDA 206 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSIK------------------ 225 S+ + + Y GLR S+ +L+ SIK Sbjct: 207 ISDDPLE-ICVKLAAYYGLRRSEVLGLKWDAINLEQKTISIKHKVIEDTVDGKSIAVGED 265 Query: 226 TQKTGTI-ITVELPDGFMKLLAMTPIGKETF----------------FINNDKQKMNATQ 268 KT + T+ L KLL +E + ++ + M Sbjct: 266 VLKTKSSFRTLPLLPSVEKLLLAEKEKQEMYRKLFKRSYCRDYLDYICLDQTGKLMRPNY 325 Query: 269 FSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTK 324 + F KA + K H +R A++ G + ++ G T A+ Y+ Sbjct: 326 VTDHFSWVLEKADLKKIRFHDLRHSCASLLLANGISMKQIQIWLGHSTFSTTADIYSH 383 >gi|302185959|ref|ZP_07262632.1| site-specific recombinase, phage integrase family protein [Pseudomonas syringae pv. syringae 642] Length = 354 Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 51/289 (17%), Positives = 100/289 (34%), Gaps = 26/289 (8%) Query: 60 YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119 YI + TL+ + Y S + ++ S ++I G + ++ + I Sbjct: 50 YIQRSGSERMTLEAALKRYL-SDITPTKKPTTQRGETSKAKKLIEHLGKYSLAALSAEII 108 Query: 120 RSGVESRKHTPS-----SAIQF---LTSMRVLFKWAVRQEY---VAINPCLSVERPKRKT 168 + R + PS S L + L+ A+ QE+ + NP L++ +P Sbjct: 109 AGYRDKRLNEPSRGGTISNNTVRLELALLSHLYTVAI-QEWGLGLTFNPVLNIRKPSPGD 167 Query: 169 EGIRPWTKEDMQQFKSFWSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQN--NIFSI 224 R + E+ + + + S P L L +G+R S+ + + + Sbjct: 168 GRDRRLSPEEERLLLAAVNRHSNPMLGWIVCIALETGMRSSEISSLRRPQVDLAKRVIRL 227 Query: 225 KTQKTGTIITVELPDGFMKLLAMT------PIGKETFFINNDKQ--KMNATQFSIWFKAK 276 K TV L ++ PI F + K F+ + Sbjct: 228 SDTKNDGSRTVPLSKRATEVFKAAMDNPVRPIDCNLVFFGEPGKDGKRRPYTFTKIWGHL 287 Query: 277 ATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 K + + H +R + + + G + E+ A G K++ + YT Sbjct: 288 KKKLDLPDFRFHDLRHEAVSRLVEGGLSDQEVSAISGHKSMQMLKRYTH 336 >gi|148727179|ref|YP_001285625.1| putative integrase [Aeromonas phage phiO18P] gi|110349314|gb|ABG73202.1| putative integrase [Aeromonas phage phiO18P] Length = 350 Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 56/345 (16%), Positives = 107/345 (31%), Gaps = 40/345 (11%) Query: 26 RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWG 85 R G +R R E+ ++M LT ++ L L++ + H Sbjct: 22 RDGPRKRKRFATKGEALAWESHM--LTAKPWQQTEAVVATGDERRLSDLVAAWFG-RHGQ 78 Query: 86 SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR------------KHTPSSA 133 +LA R + + + T++ + E R + TP++ Sbjct: 79 TLADGERR--RDKLVWLCEALDNPIATEFTSELFSAYRERRLAGELYVPGQRKQVTPTTI 136 Query: 134 IQFLTSMRVLFKWAVRQE-YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192 + ++ +F R + NP + + K + + ++++++Q E Sbjct: 137 NREQLYLQAVFNELARLGVWSGGNPLADLRQYKVQESELAYLSQDEIEQLLDACKEQRDL 196 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGK 252 L L +G R S+ + + + K TV + LAM P Sbjct: 197 WLIVMLCLSTGARWSEIEKVSRSQIGMGRITFTKTKGKRNRTVPVAPWL---LAMLPRRT 253 Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGVNK----SAHGVRKFSATISADAGATAHELM 308 F F+ +AG+ S H +R A+ G L Sbjct: 254 GRLF----------DDCYADFEKAIRRAGIKLPAGQSTHVLRHTFASHFMMNGGNILVLQ 303 Query: 309 ATYGWKTVDQAETYTKGA-----DRIRLGIKNSRRISSVVDSDDP 348 G + Y A D +RL + + V ++ P Sbjct: 304 RILGHTDIKMTMRYAHFAPDHLEDAVRLNPITALKNGDKVATEAP 348 >gi|78046247|ref|YP_362422.1| site-specific tyrosine recombinase XerC [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325925416|ref|ZP_08186815.1| tyrosine recombinase XerC subunit [Xanthomonas perforans 91-118] gi|325928769|ref|ZP_08189938.1| tyrosine recombinase XerC subunit [Xanthomonas perforans 91-118] gi|78034677|emb|CAJ22322.1| Site-specific recombinase [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325540850|gb|EGD12423.1| tyrosine recombinase XerC subunit [Xanthomonas perforans 91-118] gi|325544176|gb|EGD15560.1| tyrosine recombinase XerC subunit [Xanthomonas perforans 91-118] Length = 305 Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 32/219 (14%), Positives = 71/219 (32%), Gaps = 11/219 (5%) Query: 117 KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176 + + R + S + L++ R + W ++ ++ +P ++ PK + + Sbjct: 63 RQFVAAEHRRGLSAKSLQRRLSACRSYYAWLLKHGRISASPAAALRAPKAPRKLPQVLDA 122 Query: 177 EDMQQFKSF---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTI 232 ++ + G + R E SGLR S+ C + L ++ + K Sbjct: 123 DEAVRLVEVPTDAPLGLRDRALLEVFYSSGLRLSELCALRWRDLDLDSGLVMVLGKGSKQ 182 Query: 233 ITVELPDGFMKLLA-----MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKS 285 V + + L F ++ I K A + G+ + Sbjct: 183 RLVPVGSHAIAALREWRRDSGASADSHVFPGRAGGAISQRAVQIRIKQLAVRQGMFKDVH 242 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R A+ ++ + G + + YT Sbjct: 243 PHMLRHSFASHILESSGDLRGVQELLGHSDIATTQIYTH 281 >gi|192824211|ref|YP_001994852.1| gp35 [Mycobacterium phage Pukovnik] gi|190610441|gb|ACE79961.1| gp35 [Mycobacterium phage Pukovnik] Length = 377 Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 63/353 (17%), Positives = 125/353 (35%), Gaps = 38/353 (10%) Query: 24 YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP--RKKPTTLKWL-ISEY-R 79 Y G+R P +++ + E P R K + + + EY + Sbjct: 27 YVSSVDGQRHYAPTTYDNRMDAEAWLTSERRLIEMEVWTPPAERAKKKAVSAITVEEYAK 86 Query: 80 KSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR-KHTPSSAIQFL 137 K LA +R ++++ +I GD ++ +R+ K P++ Sbjct: 87 KWLEERDLAEGTRELYKTHARKRIYPVLGDTAVSEMNPAIVRAWWAGMGKDYPTARRHAY 146 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFE 197 +R + AV + + NPC +E+ + T E++ R+A Sbjct: 147 NVLRAVMNTAVEDKLLTENPCR-IEQKTAAERDVEALTPEELDIVAG--EVFEHYRIAVY 203 Query: 198 FLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTII----------------TVELPD 239 L ++ LR + + + ++ + ++ + V +P Sbjct: 204 ILAWTSLRFGELIELRRKDIDDDGETMLFRVRRGAARVGEKIVVGNTKTVRSKRPVTVPP 263 Query: 240 GFMKLLA--------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVR 290 +++ M + KQ+++ + F+ K K G + H +R Sbjct: 264 HVAEMVREHMKDRTKMNKGPEALLVTTTQKQRLSKSAFTRSLKKGYRKIGRTDLRVHDLR 323 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343 AT +A AGAT ELM G T A Y + A R ++ ++R+S + Sbjct: 324 AVGATYAAQAGATTKELMVRLGHTTPRMAMKY-QMASEAR-DVEIAKRMSDLA 374 >gi|238764951|ref|ZP_04625889.1| Integrase [Yersinia kristensenii ATCC 33638] gi|238696810|gb|EEP89589.1| Integrase [Yersinia kristensenii ATCC 33638] Length = 330 Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 42/235 (17%), Positives = 90/235 (38%), Gaps = 14/235 (5%) Query: 94 SFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFLTSMRVLFKWAVRQ 150 ++ +++IR+ GD ++T K + + PSS + L ++ +F + Sbjct: 81 TYRVRLEKVIREMGDPRASQMTRKFMLEYRSDKLQAGLMPSSINRDLCALSAMFTVLIDA 140 Query: 151 E-YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDS 209 E + NP + + K + + + +++++ EG R+A L +G R +++ Sbjct: 141 EVFHNENPVHGIRKLKVRNTEMAFLSDDEIERLLERL-EGDARRVAI-LCLSTGARWNEA 198 Query: 210 CRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF 269 +H+ N + K G +V + + + L+ G+ +++ QF Sbjct: 199 AGLRGEHIVGNRVTFFNTKNGKSRSVPVANSVLSLIKTHRTGQLY--------RVDYLQF 250 Query: 270 SIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 + ++ H +R AT G L G T+ Q TY Sbjct: 251 REILREVKPDLPKGQATHVMRHTFATHFMMNGGNIVTLQRILGHATIQQTMTYAH 305 >gi|153000221|ref|YP_001365902.1| phage integrase family protein [Shewanella baltica OS185] gi|151364839|gb|ABS07839.1| phage integrase family protein [Shewanella baltica OS185] Length = 296 Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 42/272 (15%), Positives = 87/272 (31%), Gaps = 18/272 (6%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KH 128 L ++ + + ++ +I D +TT ++ H Sbjct: 9 FDLLYEQHLTNLTLQGKRPATIDAYSRAIRRIAAYF-DCCPDTLTTDDLKRYFADLIASH 67 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 + S+ ++ + + + + +N + +P + T ++ S + Sbjct: 68 SWSTVKLDRNGLQFFYFHVLNKSWQWLN----IVKPPQVKHLPDILTPCEVAIVISLTRQ 123 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF--SIKTQKTGTIITVELPDGFMKLLA 246 + ++ F L GLR ++ V + + I+ K G V LP + L Sbjct: 124 -LRYQVCFLTLYSMGLRLGEAISLQVGDIDAGLMQVHIRDAKGGKDRLVPLPQRTLLALR 182 Query: 247 ---MTPIGKETFFINNDKQK---MNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISA 298 T F D Q M+ K + ++K S H +R AT Sbjct: 183 YYWRTHRHPRWLFPGKDNQPDSLMDRGGLQKAMKQVIAECNIHKAISPHSLRHSYATHLL 242 Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRIR 330 + G + G +++ YT+ D R Sbjct: 243 EQGLDLRSVQTLLGHHSLNTTARYTRLTDITR 274 >gi|170076521|ref|YP_001733160.1| integrase/recombinase [Synechococcus sp. PCC 7002] gi|170079512|ref|YP_001736147.1| integrase/recombinase [Synechococcus sp. PCC 7002] gi|169887181|gb|ACB00892.1| integrase/recombinase [Synechococcus sp. PCC 7002] gi|169887383|gb|ACB01091.1| integrase/recombinase [Synechococcus sp. PCC 7002] Length = 289 Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 44/252 (17%), Positives = 85/252 (33%), Gaps = 10/252 (3%) Query: 83 HWGSL-AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMR 141 W S + ++ ++ + + + + + ++ + +R Sbjct: 27 RWASQKSSATQKTYFYIVRNFMAAIAKPLNQITLDDLLDWLDSLQWQSQNTRRNKIAVIR 86 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKT-EGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL 200 LF + Y+ +NP +++PK R TK +Q + ++ + L + L Sbjct: 87 SLFGFCHATGYITLNPAKLLQQPKENDCRIERIITKPKVQAM-AMNADTLRNELIIKTLY 145 Query: 201 YSGLRCSDSCRAGVQHL---QNNIFSIKTQKTGTII-TVELPDGFMKLLAMTPIGKETFF 256 G+R S+ +N +K G + + +P G L F Sbjct: 146 LLGVRVSELINIRWDDFIQTDDNGLKLKVMGKGDKVRFIVVPTGLWDELEALRNDSAYVF 205 Query: 257 IN---NDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGW 313 + N+ K++ Q KA + GV S H +R AT S G H L + G Sbjct: 206 SSRKGNNGSKLSRIQVYRVVKANGDRVGVQVSPHFLRHSHATHSLKNGCDLHLLSESLGH 265 Query: 314 KTVDQAETYTKG 325 + Y Sbjct: 266 GNIAITSRYLHA 277 >gi|83593076|ref|YP_426828.1| phage integrase [Rhodospirillum rubrum ATCC 11170] gi|83575990|gb|ABC22541.1| Phage integrase [Rhodospirillum rubrum ATCC 11170] Length = 278 Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 38/243 (15%), Positives = 72/243 (29%), Gaps = 39/243 (16%) Query: 113 KITTKHIRSGVESRK-HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171 I + ++ + + TP+ A +T +R+L AVR++ VA N + G Sbjct: 3 AIGAQRVQKLYDGMRVKTPAKANAVITMLRILLTHAVREQMVATNVAKNPGLISLPFSG- 61 Query: 172 RPWTKEDMQQFKSF------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK 225 + W + + F S G+ A + G R D ++ +F + Sbjct: 62 KLWPVDAVSLFVEVADRMGWHSVGT----AVAINHWIGQRQGDILAMKRGAYRDGVFYVT 117 Query: 226 TQKTGTIITVELPDGFMKLLAM-----------TPIGKETFFINNDKQKMNATQFSIWFK 274 KT + V + + + ++ Q F F Sbjct: 118 QNKTSARVAVPHSPWVQRRVDAELDRQKARKIGSTTTATLLLCDSTNQPWREDHFRHVFA 177 Query: 275 AKATKAG----------------VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318 +KA ++ +R + T A AG T ++ G Sbjct: 178 EIRSKAADLWHTFFLDDGSSVAMLDLQFMHLRHTAVTELAIAGCTVLQIAGITGHTPKSV 237 Query: 319 AET 321 Sbjct: 238 TTI 240 >gi|304384214|ref|ZP_07366629.1| possible tyrosine type site-specific recombinase [Prevotella marshii DSM 16973] gi|325270616|ref|ZP_08137214.1| tyrosine type site-specific recombinase [Prevotella multiformis DSM 16608] gi|304334715|gb|EFM00993.1| possible tyrosine type site-specific recombinase [Prevotella marshii DSM 16973] gi|324987011|gb|EGC18996.1| tyrosine type site-specific recombinase [Prevotella multiformis DSM 16608] Length = 387 Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 59/318 (18%), Positives = 121/318 (38%), Gaps = 34/318 (10%) Query: 51 LTGSTPKREYINSPRKKPTTLKWL---ISEYRKSAHWGSLAVNS----RISFES--YFDQ 101 +T K Y+ R P TL L + EY++ +L+ + + S++S +F Q Sbjct: 50 ITAEYLKERYMQQSRPMP-TLAELYQSVCEYKEELQGRTLSKATVRAFKDSYKSFVHFLQ 108 Query: 102 IIRKSGDFDYRKITTKHIRS----GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINP 157 + ++ D ++ + + + SS L + + + A+++ YV +P Sbjct: 109 VRDRA-DCMPTEVDKTLLEDYRLFMLRDLGNKESSVGNRLRHLHQVIRKALQERYVREDP 167 Query: 158 CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGV 214 ++ + T T +D+Q+ ++ S RL F ++GL SD + + Sbjct: 168 FELID-IETPTYERNALTADDLQKLLAYRPHRSVDNHCRLIFLLGCFTGLAFSDLKKLRM 226 Query: 215 QHL-----QNNIFSIKTQKTGTIITVELPDGFMKLLAM-TPIGKETFFINNDKQKMNATQ 268 + S+ KT V L K+LA+ +P +E F + + Sbjct: 227 DDVYTFGDGRRYISLCRTKTQNRSIVPLLPIAEKILAIVSPGRREGLFFREF---PSNSN 283 Query: 269 FSIWFKAKATKAGVN----KSAHGVRKFSATIS-ADAGATAHELMATYGWKTVDQAETYT 323 F+ + KAG+ ++H R AT + G + G + + E Y Sbjct: 284 FNRTIQEICIKAGLPPHTQATSHTARHTFATTICLENGLPIETVSKMLGHRFISTTEIYA 343 Query: 324 KGADRIRLGIKNSRRISS 341 + + ++ + + S Sbjct: 344 R-VTKSKIAKEMQPLMGS 360 >gi|257438381|ref|ZP_05614136.1| site-specific recombinase, phage integrase family [Faecalibacterium prausnitzii A2-165] gi|257199212|gb|EEU97496.1| site-specific recombinase, phage integrase family [Faecalibacterium prausnitzii A2-165] Length = 342 Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 36/270 (13%), Positives = 86/270 (31%), Gaps = 26/270 (9%) Query: 86 SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS---MRV 142 ++A ++ S++ + I I + ++ + S + + Sbjct: 61 NIAPTTQESYKYCLKMLKEGFYHRPLTVIRPIDIENFLKGMRRDGRSDSYISKARGMLYQ 120 Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIR--PWTKEDMQQFKSFWSEGSQPRLAFEFLL 200 +F+ A + V NP E+ + R +T ++ + + L+ LL Sbjct: 121 IFQKAEANDLVRRNPVRLAEKMRATGTAKRKEAFTTAEVAHLMKVLPD-DRMGLSIRLLL 179 Query: 201 YSGLRCSDSCRAGVQHL--QNNIFSIKT--------------QKTGTIITVELP-DGFMK 243 +G+R + Q + ++ I+ + +I + +P + Sbjct: 180 GTGMRMQELLALEPQFIEEDGSVIHIRQAVKVVKGTVSIGSPKSKDSIRDIPVPLNVRPC 239 Query: 244 LLAMTPIGKETFFIN-NDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300 + + + + + N T F F+ +AG + + H R + Sbjct: 240 AIKLRDTTDQFIWESPKTGLPCNPTHFRDVFRKSLEEAGDVRLLTPHSCRHTYVSQMQAL 299 Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIR 330 G + + G + E Y + IR Sbjct: 300 GVDIQTIQSIVGHADTEMTEHYLHVQESIR 329 >gi|53717770|ref|YP_106756.1| prophage integrase [Burkholderia pseudomallei K96243] gi|52208184|emb|CAH34115.1| prophage integrase [Burkholderia pseudomallei K96243] Length = 376 Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 43/320 (13%), Positives = 100/320 (31%), Gaps = 23/320 (7%) Query: 18 HGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISE 77 ++ G RIR ++A S R+ R T + Sbjct: 8 KNGPWWFDLSIDGSRIRQSSGTSDRRAAEELAAKVASDYWRQKKLGERPA-VTWDAAVVH 66 Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH--------T 129 + K + S + + + + + R I + I++ +E++ Sbjct: 67 WLK----QNQHQRSLETTKQRLRWLTDQLKGENVRNIDRERIQALIETKAAEKYRGSPVA 122 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 ++ + + ++ V+ + ++ P + + + + + T+ Q+ Sbjct: 123 GATVNRHMAALSVILHHCHAEGWIDAVP--PIRKLRENSARLTWLTRAQAQRLLEELP-- 178 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQKTGTIITVELPDGFMKLL 245 + R F L +GLR S+ + K G +I+V L + + +L Sbjct: 179 THLRQMARFALATGLRESNVRLLEWAQVDRERALAWIHADQAKAGKVISVPLNEDALGVL 238 Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATA 304 + + + ++ ++ +AG+ H +R A+ AG Sbjct: 239 REQQGQHKRYVFVYKGAPIGRI-YNHAWQKACMRAGLSGLRFHDLRHTWASWHVQAGTPL 297 Query: 305 HELMATYGWKTVDQAETYTK 324 L GW + Y Sbjct: 298 PILQQLGGWASYQMVLRYAH 317 >gi|300313582|ref|YP_003777674.1| site-specific integrase/recombinase [Herbaspirillum seropedicae SmR1] gi|300076367|gb|ADJ65766.1| site-specific integrase/recombinase protein [Herbaspirillum seropedicae SmR1] Length = 330 Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 56/305 (18%), Positives = 95/305 (31%), Gaps = 46/305 (15%) Query: 74 LISEYRKSAHWGS-LAVNSRISFESYFDQII-------RKSGDFDYRKITTKHIR---SG 122 LI +Y L+ ++ + ++ + D D RK T IR + Sbjct: 12 LIGQYLSFLRTQRKLSDHTVEHYGRDLQELRSLLAPAGEEHADIDLRKTTQVQIRKCAAR 71 Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 + +R S + L++ R F W Q +A NP V+ PK+ + +D + Sbjct: 72 LHARGLNARSIARKLSAWRGFFGWLSMQMDLAANPVDGVKAPKKSKPLPKALAADDAIRL 131 Query: 183 KSFWSEGSQP--------RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS----------- 223 S P R FE L SGLR S+ V ++ + Sbjct: 132 VSQPDPVRDPDSTLAACNRAMFELLYSSGLRVSELVGIDVADVREGGYESAGWVDLEEAE 191 Query: 224 -IKTQKTGTIITVELPDGFMKLL------------AMTPIGKETFFINNDKQKMNATQFS 270 T K G V + L A F+N +++ Sbjct: 192 VTVTGKGGKKRKVPVGQAARAALADWLPLRARLRKADGGPDSHALFLNERGARISPRVAQ 251 Query: 271 IWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 + KA + + H +R A+ + + G ++ + YT D Sbjct: 252 LRLKAHGRALEMASDVHPHMLRHSFASHVLQSSGDLRAVQEMLGHASITATQVYT-ALDF 310 Query: 329 IRLGI 333 RL Sbjct: 311 QRLAQ 315 >gi|296393161|ref|YP_003658045.1| integrase family protein [Segniliparus rotundus DSM 44985] gi|296180308|gb|ADG97214.1| integrase family protein [Segniliparus rotundus DSM 44985] Length = 329 Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 40/269 (14%), Positives = 94/269 (34%), Gaps = 2/269 (0%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133 L+ +++ + + + + +G R + + + ++ Sbjct: 54 LLEDWQTDMTIQRREETTISERVRFVSKFHKDTGVQPAHAQVIDIKRWIAQHPEWSTATV 113 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193 + T +R FKW Q++ + +P + + + RP + + + + + R Sbjct: 114 ATYTTHLRAWFKWLQFQDHRSDDPMVKIAAVRHPERDPRPVSSDGLARLLADCRMQPTTR 173 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKE 253 LR ++ + + + ++ F + K T+ L +L P Sbjct: 174 ARVLLAACQELRVAEIAKIRGEDIVDSRFLVVNGKGNRTKTLPLHPLIAELAKKMPAQGF 233 Query: 254 TFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGW 313 +F + +++ S +A V + H +R + T +D GA + Sbjct: 234 -WFPPPNGGHVDSKSVSQVISLAMRRAKVKGTPHSLRHWYGTELSDRGADLAVVQDLMRH 292 Query: 314 KTVDQAETYTKGAD-RIRLGIKNSRRISS 341 K+ + YT AD R R I + + +S Sbjct: 293 KSPNTTRGYTLIADKRKRQAILSLDQYNS 321 >gi|254449557|ref|ZP_05062994.1| phage integrase [Octadecabacter antarcticus 238] gi|198263963|gb|EDY88233.1| phage integrase [Octadecabacter antarcticus 238] Length = 315 Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 43/266 (16%), Positives = 82/266 (30%), Gaps = 17/266 (6%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132 L + ++ ++ G T +R+ T + Sbjct: 28 ALRQRMIEDMRIRAIGETTQKGHIRAIKHFATFLGRSPDTA-TPDELRAYQLHMTDTEVT 86 Query: 133 A---IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM-QQFKSFWSE 188 + S+R+ F +E + ++ ++ + E++ + Sbjct: 87 TSTFNTRIVSLRLFFGVTCGREEMKR----YMQFRRKPRRLPVVLSVEEIGDLLAAVPGP 142 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTIITVELPDGFMKLLA 246 G R A +GLR S+ C V + + + K G L G + LL Sbjct: 143 GLTYRAALGISYGAGLRASEVCHLKVVDIDSGRMLIHVDEGKNGKDRKAMLSPGLLDLLR 202 Query: 247 ---MTPIGKETFFINNDK-QKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300 + + F K ++ Q + F + AG+NK + H +R AT +A Sbjct: 203 EYWLEARPEGWLFPGKPKINPLSPRQLNRAFTSAKHMAGINKPVTLHTLRHSFATHLLEA 262 Query: 301 GATAHELMATYGWKTVDQAETYTKGA 326 G + G + YT A Sbjct: 263 GTDVRVIQVLLGHSKLSTTARYTHVA 288 >gi|289676143|ref|ZP_06497033.1| site-specific recombinase, phage integrase family protein [Pseudomonas syringae pv. syringae FF5] Length = 354 Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 50/290 (17%), Positives = 108/290 (37%), Gaps = 27/290 (9%) Query: 60 YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119 YI + TL+ + Y + + ++ + + Q+I+ G + ++++ I Sbjct: 50 YIQRSGSERMTLENALQRYLREVS-PTKKPTTQKAEATKAQQLIKHLGKYSLAALSSEVI 108 Query: 120 RSGVESR------KHTPSSAIQF---LTSMRVLFKWAVRQEY---VAINPCLSVERPKRK 167 + ++R + P+S L + LF A+ QE+ + NP L++ +P Sbjct: 109 ANYRDTRLGSLTNRGQPTSNNTVRLELALLSHLFTVAI-QEWGLGLTYNPVLNIRKPSPG 167 Query: 168 TEGIRPWTKEDMQQFKSFWSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQNN--IFS 223 R T ++ ++ ++ S P L L +G+R S+ + + Sbjct: 168 EGRNRRLTADEERRLLKEVNKHSNPMLGWIVSIALETGMRSSEITGLRRHQVDVKKRVAH 227 Query: 224 IKTQKTGTIITVELPDGFMKLLAMT------PIGKETFFINNDKQ--KMNATQFSIWFKA 275 + K + TV L PI + F + K F+ + Sbjct: 228 LLVTKNDSARTVPLSKLAAATFQAALQNPVRPIDCDLIFFGEPGKDGKRRPYAFTKIWGL 287 Query: 276 KATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 +K G+ + H +R + + + G + E+ + G K++ + YT Sbjct: 288 LKSKLGMPDFRFHDLRHEAVSRLVEGGLSDQEVSSISGHKSMQMLKRYTH 337 >gi|222147551|ref|YP_002548508.1| Integrase protein [Agrobacterium vitis S4] gi|221734539|gb|ACM35502.1| Integrase protein [Agrobacterium vitis S4] Length = 343 Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 69/325 (21%), Positives = 111/325 (34%), Gaps = 31/325 (9%) Query: 13 KERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72 K RHG +Y R G R + + + KR R++ L Sbjct: 4 KLIKRHGGKNWYIR-GTIRGVSVDETTGTD------------DKKRAEEIRIRRETEILD 50 Query: 73 WLISEYRKSAHWGSLAVNSRIS--FESYFDQIIRKSGDFDYRKITTKHI-RSGVESRKHT 129 I RK+A + +V + D + R G +I I R+ Sbjct: 51 RRIHGIRKTATFLEASVMYLEEGGASRFVDVVARYFGTTPLSEIDQPAIDRAARVLYPDA 110 Query: 130 PSSAIQ--FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 +S T + + +A +++ P +ERP + IR T E+ Q + Sbjct: 111 KASTRNRQVFTPVSAVLNFAAKKKMCDK-PI--IERPAQPKGRIRWITIEEAQSLIDACA 167 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLL 245 +P + F L Y+G R S++ + + + + KTG V L G + +L Sbjct: 168 PHLKPLVTF--LFYTGARLSEALYLDWRDVDLSRSHVAFLDTKTGDDRGVPLHSGVVAML 225 Query: 246 AMTPIGKETFFINNDKQKMNAT-----QFSIWFKAKATKAGV-NKSAHGVRKFSATISAD 299 A P + F +D + Q FK +AG+ + H R AT Sbjct: 226 ANLPHREGAVFRRHDGKPYEVKEDGGGQIKTGFKGACRRAGISDFHPHDCRHTWATWHYA 285 Query: 300 AGATAHELMATYGWKTVDQAETYTK 324 A LM GWK+ Y Sbjct: 286 ANRDLITLMRLGGWKSERMVLRYAH 310 >gi|160894142|ref|ZP_02074920.1| hypothetical protein CLOL250_01696 [Clostridium sp. L2-50] gi|160894145|ref|ZP_02074923.1| hypothetical protein CLOL250_01699 [Clostridium sp. L2-50] gi|156864175|gb|EDO57606.1| hypothetical protein CLOL250_01696 [Clostridium sp. L2-50] gi|156864178|gb|EDO57609.1| hypothetical protein CLOL250_01699 [Clostridium sp. L2-50] Length = 351 Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 43/285 (15%), Positives = 99/285 (34%), Gaps = 14/285 (4%) Query: 51 LTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD 110 L + K E + K+ + + + + + + S +++ + ++ + D Sbjct: 53 LRYTLAKYEVTENQNKEKYSEQNYVELFLSAKRIEGCSEKSLKYYKATIEAMLDEL-QKD 111 Query: 111 YRKITTKHIRSGV----ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166 + I T IR + E +K + + + F W ++Y+ +P + R K Sbjct: 112 VKHIVTDDIRGYLTEYQEKKKSSKVTIDNIRRILSSFFSWLEDEDYILKSPVRRIHRVKT 171 Query: 167 KTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226 T ++ E ++ + +E + + L +G+R + + N Sbjct: 172 GTNIKETYSDEALELMRDNCTE-LRDLAIIDMLASTGMRVGEMVLLNRDDIDFNERECVV 230 Query: 227 QKTGTIITVELPDG-----FMKLLAMTPIGKETFFIN--NDKQKMNATQFSIWFKAKATK 279 G+ V D L F++ + +++ + + + Sbjct: 231 FGKGSKERVVYFDARTKIHLQNYLESRRDNNPALFVSLKSPHKRLKIGGVEVRLREFGKQ 290 Query: 280 AGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 G+NK H R+ AT++ D G +L G + +D Y Sbjct: 291 LGLNKVHPHKFRRTLATMAIDKGMPIEQLQQLLGHRKIDTTLQYA 335 >gi|319442272|ref|ZP_07991428.1| integrase/recombinase [Corynebacterium variabile DSM 44702] Length = 312 Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 45/277 (16%), Positives = 85/277 (30%), Gaps = 38/277 (13%) Query: 85 GSLAVNSRISFESYFDQIIR-------KSGDFDYRKITT--KHIRSGVESRKHTP---SS 132 L+ N+ ++ D+ + I +R G E P +S Sbjct: 20 RGLSSNTLENYGRDADRYLTWLEGEGLTVATATVADIERFITDLRKGHEVTGGRPLAQTS 79 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG--- 189 A + L+++R L +A R + + +V +++ + + T + + G Sbjct: 80 AARSLSTVRSLHAFAARDRGIP-DAADAVPVTQQRADLPKALTIDQVTALIEAVPVGEDA 138 Query: 190 ----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQKTGTIITVELPDGFMK 243 + R E L +G R S+ V + + ++ + + Sbjct: 139 RPLDLRDRALVELLYSTGARISEVLDLNVDDIDRTQDTVLLRGKGDHERVVPVGTPALAA 198 Query: 244 ----LLAMTPI-----------GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAH 287 L+ P F+ ++M A KAG+ K S H Sbjct: 199 VDAYLVRARPTLAARGSGRAGSDGAALFLTASGRRMRRQSGFNVVAAAGEKAGLGKVSPH 258 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 +R AT GA + G V + Y K Sbjct: 259 ALRHSFATHLLAGGADIRVVQELLGHSHVVTTQIYAK 295 >gi|317057318|ref|YP_004105785.1| integrase family protein [Ruminococcus albus 7] gi|315449587|gb|ADU23151.1| integrase family protein [Ruminococcus albus 7] Length = 403 Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 46/323 (14%), Positives = 102/323 (31%), Gaps = 50/323 (15%) Query: 68 PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR- 126 + + E+ + + + + + + G KI T+ I+ + Sbjct: 66 AAKFETVAEEWFSTYAEKNYKPKTLERTKQLKARTYKAIGHLRIDKINTRIIQKFINDLG 125 Query: 127 ----------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176 K +P + + T + ++F +A + + ++ NPC +V PK +T Sbjct: 126 GEGINIRTGGKLSPKTIKHYSTFISMVFSYAEKMQMISDNPCKNVLLPKIAEHEKEIYTL 185 Query: 177 EDMQQFKSFW-SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQ------ 227 E+ Q S ++ R +Y G R + + + N+ SI+ Sbjct: 186 EETQHLLSLLQEAPTKYRAFLTLAIYGGFRRGELLGLEWKDVDFNTNVVSIRRTALYTKE 245 Query: 228 --------KTGTIIT--------VELPD--GFMKLLAMTPIGK-----ETFFINNDKQKM 264 KT + + + + + +G + F + + M Sbjct: 246 KGHYTDTPKTKGSVRDLKFTADVINILKIHKAEQAKQILKVGDQWNETDRLFTTWNGKVM 305 Query: 265 NATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETY 322 + W K + + H +R +A++ +G + A G Y Sbjct: 306 DGATPYNWLKKLCDRNNLRFLGLHSLRHLNASLLIHSGVNIRTVSACLGHSQTSTTLNIY 365 Query: 323 TKGADRIRLGIKNSRRISSVVDS 345 + N+ + SV D+ Sbjct: 366 AHS-----MAKANAEAMESVADT 383 >gi|255602863|ref|XP_002537936.1| conserved hypothetical protein [Ricinus communis] gi|223514495|gb|EEF24447.1| conserved hypothetical protein [Ricinus communis] Length = 384 Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 56/354 (15%), Positives = 114/354 (32%), Gaps = 39/354 (11%) Query: 1 MTPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY 60 M LP V + HG Y R+ + +R + + +P+ AL + + Sbjct: 41 MKKKSHLPKGVHAK---HG-AYYLVRQVNKQRSWIRLSAIADGLPSLYRALADAEMRGAV 96 Query: 61 INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120 + ++ + S++ + A ++ + I + +F + T Sbjct: 97 DDR-------MQAICSQWLQEVSTKH-AKKTQANDIYQVRTISQAFAEFRAEDVRTPDAV 148 Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAI--NPCLSVERPKRKTEGIRPWTKED 178 +++ P + + + +R L +++ + Y NP ++ K R T + Sbjct: 149 EFLKAFAKMPRTYNAYRSMLRELMRFSEEKGYRESGANPVDAIRTASVKAR-NRYITDSE 207 Query: 179 MQQFKSFW------------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226 +++ K G + +G R D ++ + Sbjct: 208 LRRVKVAALRSGGQRAKQINPAGRMICAILDMAYLTGQRIGDVLALPWANVGREGVLFRP 267 Query: 227 QK----TGTIITVELPDGFMKLLAMTPIGK----ETFFINNDKQKMNATQFSIWFKAKAT 278 K TG + +E +L+A K F D + ++ T Sbjct: 268 SKVEDSTGAQVLIEWTPRLRELVARIRAEKNVGLNYVFTGPDGGAYSYEALKSAWRRALT 327 Query: 279 KAGV-NKSAHGVRKFSATIS-ADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 +AGV + H +R + T G TA + M T Q Y + IR Sbjct: 328 RAGVKDAHIHDLRAKALTDVDRLHGVTAAQRM--GAHSTQSQTADYVRHKQAIR 379 >gi|295100875|emb|CBK98420.1| Site-specific recombinase XerD [Faecalibacterium prausnitzii L2-6] Length = 341 Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 36/270 (13%), Positives = 86/270 (31%), Gaps = 26/270 (9%) Query: 86 SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS---MRV 142 ++A ++ S++ + I I + ++ + S + + Sbjct: 60 NIAPTTQESYKYCLKMLKEGFYHRPLTVIRPIDIENFLKGMRRDGRSDSYISKARGMLYQ 119 Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIR--PWTKEDMQQFKSFWSEGSQPRLAFEFLL 200 +F+ A + V NP E+ + R +T ++ + + L+ LL Sbjct: 120 IFQKAEANDLVRRNPVRLAEKMRASGTAKRKEAFTTAEVAHLMKVLPD-DRMGLSIRLLL 178 Query: 201 YSGLRCSDSCRAGVQHL--QNNIFSIKT--------------QKTGTIITVELP-DGFMK 243 +G+R + Q + ++ I+ + +I + +P + Sbjct: 179 GTGMRMQELLALEPQFIEEDGSVIHIRQAVKVVKGTVSIGSPKSKDSIRDIPVPLNVRPC 238 Query: 244 LLAMTPIGKETFFIN-NDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300 + + + + + N T F F+ +AG + + H R + Sbjct: 239 AIKLRDTTDQFIWESPKTGLPCNPTHFRDVFRKSLEEAGDVRLLTPHSCRHTYVSQMQAL 298 Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIR 330 G + + G + E Y + IR Sbjct: 299 GVDIQTIQSIVGHADTEMTEHYLHVQESIR 328 >gi|213422078|ref|ZP_03355144.1| site-specific tyrosine recombinase XerD [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 166 Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 31/155 (20%), Positives = 53/155 (34%), Gaps = 15/155 (9%) Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTP 249 + + E L +GLR S+ + + ++ K V L + + L Sbjct: 2 RDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVYWLETYL 61 Query: 250 IGKETFFIN----------NDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATI 296 + +N Q+M F K A AG++ S H +R AT Sbjct: 62 EHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHAFATH 121 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGA-DRIR 330 + GA + G + + YT A +R+R Sbjct: 122 LLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLR 156 >gi|90962164|ref|YP_536080.1| Phage integrase [Lactobacillus salivarius UCC118] gi|90821358|gb|ABD99997.1| Phage integrase [Lactobacillus salivarius UCC118] Length = 381 Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 57/303 (18%), Positives = 101/303 (33%), Gaps = 39/303 (12%) Query: 67 KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES- 125 K ++ E+ A R + + D KIT +H + Sbjct: 66 KSGKFGDVLDEWLALHKETVKASTWRYIERRVKNHVRPYFKDMYVDKITLRHCQDFTNKA 125 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP----WTKEDMQQ 181 P Q ++ ++ +A+R + NP L V +PK++T + K+++++ Sbjct: 126 FAAAPVGFTQIISIVKNTLDYALRLGMIESNPMLYVIKPKKQTTISDKHGNYYNKDELKK 185 Query: 182 FKSFWSE-GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ---------------NNIFSIK 225 F + + + F L YSGLR + L NN I+ Sbjct: 186 FLAAAKDTDLKKYTLFRLLAYSGLRVGECLALTWHDLDYKNNTIAINKTYAKTNNGIKIQ 245 Query: 226 TQKTGTII-----TVELPDGFMKL----------LAMTPIGKETFFINNDKQKMNA-TQF 269 T KT I VE + + + + K+ +N+K A Sbjct: 246 TPKTKASIRKVSLDVETIQVLKEWQLNQRKQLLKVGINAMNKQQLIFSNNKNSFIANETV 305 Query: 270 SIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGAD 327 + A K G++ + HG R AT+ +G ++ A G V YT Sbjct: 306 RLAIHQIAKKTGIHPITTHGFRHTHATLLFASGMDIKQVQARLGHSNVQTTLNIYTHAIQ 365 Query: 328 RIR 330 + Sbjct: 366 DKQ 368 >gi|308455404|ref|XP_003090242.1| hypothetical protein CRE_23788 [Caenorhabditis remanei] gi|308265127|gb|EFP09080.1| hypothetical protein CRE_23788 [Caenorhabditis remanei] Length = 319 Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 42/313 (13%), Positives = 90/313 (28%), Gaps = 53/313 (16%) Query: 71 LKWLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSG--------DFDYRKITTKHIRS 121 L I + + + + + ++ + + D ++ + +R Sbjct: 3 LGTAIDGFLSAVEFEYGYSPQTVRAYRRDLLSLSEYLEASAPDSGPESDVSELGLETLRD 62 Query: 122 GVESRKHT---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 + SR+ S+ + + +++ KW + VA NP + PK + R + + Sbjct: 63 WLWSRQEQGLAQSTLARNVATLKSFGKWLEQHRLVAGNPASRLRTPKAPSALPRVLSDDQ 122 Query: 179 MQQFKSFW--------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230 + + + R E L + LR S+ C + L +++ G Sbjct: 123 ISRILDRAESLARGGDPIAVRDRALLELLYATALRVSEVCGLDLSGLDRIQRTVRVVGKG 182 Query: 231 -TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV------- 282 V L + +N ++ + AT A Sbjct: 183 AKERVVPFGAPAALALEEYLSSARSELMNVATDAASSAGL---VRESATTAVFLSASGSR 239 Query: 283 ---------------------NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321 + H +R +AT + GA + G ++ + Sbjct: 240 IQAHQIYRLVARSLEQEPGSGPRGPHTLRHTAATHLLNGGADLRVVQEMLGHSSLASTQV 299 Query: 322 YTKGADRIRLGIK 334 YT RL Sbjct: 300 YTH-VSTERLAQS 311 >gi|268608336|ref|ZP_06142063.1| hypothetical protein RflaF_02413 [Ruminococcus flavefaciens FD-1] Length = 396 Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 56/329 (17%), Positives = 105/329 (31%), Gaps = 57/329 (17%) Query: 65 RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIRS 121 + + L E+ ++ +L + +E +I G KIT + I++ Sbjct: 63 KTSAMKFQELAEEWFENYAKNALRSTT---YERMLQLRGRIYPALGHMRMDKITPRQIQA 119 Query: 122 GVESRKH-----------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170 V S P + L+ + +F +AV+ V NPC V PK Sbjct: 120 FVNSLSREGANERTGKPLAPKTIRHNLSFVSDVFSYAVKMGVVNDNPCTKVTLPKNNQAE 179 Query: 171 IRPWTKEDMQQFKSFW-SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQ 227 + +T E +Q+F S +E + R F +++SG R + + + NNI S++ Sbjct: 180 KKIYTPEQVQRFLSLLNNEPLKYRTFFNLMIFSGFRRGEMLGLEWKDVDFENNIISVRRT 239 Query: 228 KT---------------GTIITVELPDGFMKLLAMTP--------------IGKETFFIN 258 + T++ P M +L + + + Sbjct: 240 SNYTGRKGTYTDTTKTKKSQRTLKFPQEIMDMLREYKDEQDMQALKCGDKWVEADRLYTK 299 Query: 259 NDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVD 317 M W K + H R A++ + G + G TV Sbjct: 300 WKGLPMQNGTPYFWLGEFCEKHDLPFYGLHSFRHLFASLLVNQGVDIVTVSGALGHSTVS 359 Query: 318 QAE-TYTKGADRIRLGIKNSRRISSVVDS 345 Y + + ++S V + Sbjct: 360 TTSNIYCH------MLEEAQAKVSEAVSA 382 >gi|227519034|ref|ZP_03949083.1| bacteriophage integrase [Enterococcus faecalis TX0104] gi|227073534|gb|EEI11497.1| bacteriophage integrase [Enterococcus faecalis TX0104] Length = 392 Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 63/392 (16%), Positives = 125/392 (31%), Gaps = 72/392 (18%) Query: 1 MTPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY 60 M R +T GKI +YF+ R E+ AY+ + K++ Sbjct: 1 MENMSRFKKHITAT----GKITWYFQAFRTTRRGFNSKREAQL--AYLEMVKQHRNKQKR 54 Query: 61 INS-PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119 + S + + KW EY +S + V + E + R G ++++ + Sbjct: 55 LASNDKFSVVSQKWF--EYYRSLN--EQKVATYDKREEQVKILNRWIGGKKLSSLSSEEL 110 Query: 120 RSGVESRKHT----------PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK-- 167 + + K +S + + ++F + ++ + NP V+ PK + Sbjct: 111 QKFLFILKEKGIDGVNVGYAKNSLQSLVQVLNMVFNYCKKKNLINENPMKFVKMPKYQLS 170 Query: 168 ---------TEGIRPWTKEDMQQFKSF--WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH 216 + + T ++++ F ++ E + F L Y+G R S++ Q Sbjct: 171 LKDLKESVNSLEDKFLTVDELRAFLNYGIVYEELPMSVLFHVLFYTGCRVSEALALQPQD 230 Query: 217 LQNNI-----------------FSIKTQKT-GTIITVELPD-------GFMKLLAMTPIG 251 + F I+T KT + V + + +L T Sbjct: 231 IDFERNEILFYKQTAVKGKSKDFRIETTKTVSSARRVPVTPLVMEKLQELIDVLNKTKRN 290 Query: 252 -----KETFFI-----NNDKQKMNATQFSIWFKAKATKAGVNKSAHG--VRKFSATISAD 299 ET+ + K + G+NK H R A++ A+ Sbjct: 291 SNFVVDETYLFVYLDPGKRGVPYRREYVNDHVKRCVERCGINKDFHTHLARHTMASLVAE 350 Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRL 331 + L G ++ Y +L Sbjct: 351 Y-CSWDVLKDRLGHTDSTTSKIYRHLTSTEKL 381 >gi|288940629|ref|YP_003442869.1| integrase family protein [Allochromatium vinosum DSM 180] gi|288896001|gb|ADC61837.1| integrase family protein [Allochromatium vinosum DSM 180] Length = 361 Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 42/285 (14%), Positives = 92/285 (32%), Gaps = 23/285 (8%) Query: 67 KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126 + TLK I YR +R ++ D + G +T I + Sbjct: 61 QKHTLKDAIKRYRTEI-LPDHTATTRPTYAQRLDYWCAELGHLRLSDVTPAKIAGCRDEL 119 Query: 127 --KHTPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 P++ +L + + V++ +V +P V++P R +++++ + Sbjct: 120 LTSKAPATVHGYLAVLASVLTTCVKRWHWVKESPMAHVDKPSVANGRTRFLSQDELSRLL 179 Query: 184 SFWSEGSQP--RLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIK-----TQKTGTIIT 234 P LA + +G R + + + ++ ++ T K G Sbjct: 180 EACRASESPDLYLAVVLAITTGARRGELLGLRWRDVDLVKDVLYLRVDNETTTKGGVRAV 239 Query: 235 V------ELPDGFMKLLAMTPIGKET---FFINNDKQKMNATQFSIWFKAKATKAGVNK- 284 + + + T + F+ +AG+ Sbjct: 240 RIASQVKPILEARQAGYRRGKVADITGAALVFPSRVSTRQPVDLRTPFRTALRRAGIEGF 299 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 H +R +A+ A GA+ E+ A G ++ + Y A++ Sbjct: 300 RWHDLRHSAASFMAAHGASLVEIGAVLGHRSAQTTKRYAHLAEQA 344 >gi|238922492|ref|YP_002936005.1| putative phage integrase/recombinase [Eubacterium rectale ATCC 33656] gi|238925709|ref|YP_002939226.1| putative phage integrase/recombinase [Eubacterium rectale ATCC 33656] gi|238874164|gb|ACR73871.1| putative phage integrase/recombinase [Eubacterium rectale ATCC 33656] gi|238877385|gb|ACR77092.1| putative phage integrase/recombinase [Eubacterium rectale ATCC 33656] gi|291525374|emb|CBK90961.1| Site-specific recombinase XerD [Eubacterium rectale DSM 17629] Length = 282 Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 34/268 (12%), Positives = 93/268 (34%), Gaps = 17/268 (6%) Query: 77 EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH---TPSSA 133 + ++ +L S +++Y + ++T + +R + ++K ++ Sbjct: 8 QLEEAGKIRNLKERSINCYKNYVSYFLNYMEKHP-EELTCQDVRDFLLAKKDNGLKATTL 66 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193 + +++R ++ + + ++V R + + + +++ + + + + Sbjct: 67 NLYNSAIRFFYRNVLHVLWDD----ITVPRMIIEHKLPTVLSTDEIDRLLDATDD-LKYK 121 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL------PDGFMKLLAM 247 F + SG+R S+ + I + T + + Sbjct: 122 AMFATMYSSGMRVSEVIHLHYDDISRTNMQIHVRDTKNRMDRYTILSERNLALLTEYWFR 181 Query: 248 TPIGKETFFINND-KQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAH 305 K F N Q + + + A+ AG++ + H +R AT + G Sbjct: 182 KGRPKGILFPNQFTGQYLTVSTLEQVIRRSASAAGLSGVTPHCLRHSFATHLMEQGVEQR 241 Query: 306 ELMATYGWKTVDQAETYTKGADRIRLGI 333 + A G + E Y +++ +GI Sbjct: 242 NIQALLGHRDPKSTEVYLHVSNKSIMGI 269 >gi|294619348|ref|ZP_06698812.1| phage integrase family protein [Enterococcus faecium E1679] gi|291594397|gb|EFF25810.1| phage integrase family protein [Enterococcus faecium E1679] Length = 378 Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 51/365 (13%), Positives = 114/365 (31%), Gaps = 55/365 (15%) Query: 15 RTRHGKIIYYFR--KGHGRRIRLPYPHE---STFIPAYMSALTGSTPKREY-INSPRKKP 68 R R + YYF G R ++ A L+ +Y + + + Sbjct: 6 RKRGKRWYYYFEDINDDGSRKKVEKVGGDTRPEAEAALRKVLSDIDETGQYFLGTDTRVK 65 Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESR- 126 L + + EY K +L N+ ++ + I G ++ +++ + + Sbjct: 66 QYLDFWMEEYVK----LNLKYNTYENYRFTIKNHINGYLGKKKLTDLSPALLQNFINAEF 121 Query: 127 -----KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK-----TEGIRPWTK 176 K T + L + + + + NP L V+ PK + + ++ + Sbjct: 122 KKGYSKKTMTITHSVLKNALNMAVY--PWGLIKQNPMLYVKIPKYEERPTTKKDLKIISL 179 Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL----------------QNN 220 ED EG + Y+G+R + C ++ Sbjct: 180 EDFDHMLEITPEGHPFYIPLNIGFYTGMRVGEVCGLTWDNVDFSNGTITVEKQMVKNDGE 239 Query: 221 IFSIKTQKTGTIITVELPDGFMKLLAMTP--------------IGKETFFINNDKQKMNA 266 + + + T+ + + +L I D + + Sbjct: 240 WVYGTPKTSSSNRTIFIGQTLLAILKKHKKQQLENRMKYGKLYIDSNAVCTKEDGELVTP 299 Query: 267 TQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKG 325 + + + ++ + H +R AT+ + GA E+ G + +TY+ Sbjct: 300 SVVKWNTRRISNALSLSFNFHSLRHTHATLLLENGAKMKEISERLGHSRISITMDTYSHV 359 Query: 326 ADRIR 330 D++R Sbjct: 360 TDKMR 364 >gi|329114535|ref|ZP_08243294.1| Tyrosine recombinase XerC [Acetobacter pomorum DM001] gi|326696015|gb|EGE47697.1| Tyrosine recombinase XerC [Acetobacter pomorum DM001] Length = 315 Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 43/221 (19%), Positives = 78/221 (35%), Gaps = 23/221 (10%) Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSV-ERPKRKTEGIRPWT-------KEDMQQF 182 + + ++++R FK+ R++ V NP + + P+ K RP ED+ Sbjct: 86 RTRARRVSAVRSFFKYLARRQGVE-NPAIQLLSTPRTKKPLPRPLAKDQALAAPEDISDL 144 Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ----NNIFSIKTQKTGTIITVELP 238 E + F L GLR S++ + L +N+ I K G V + Sbjct: 145 AHTPMEQQRDAALFLLLYGCGLRISEALNLNIADLDVMRSSNVLRI-LGKGGKERLVPVL 203 Query: 239 DGFMKLLAM------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVR 290 + L P F+ +++ + +G+ + H +R Sbjct: 204 PVVQQALEAWRGRHPAPTPDAPLFVGIRGKRLQPAIAQKAMREWRHLSGLPDYVTPHALR 263 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 AT + GA + G ++ + YT AD RL Sbjct: 264 HSFATHLMEGGADLRVIQELLGHASLSTTQRYT-LADEARL 303 >gi|301162387|emb|CBW21932.1| putative tyrosine recombinase [Bacteroides fragilis 638R] Length = 308 Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 39/260 (15%), Positives = 83/260 (31%), Gaps = 13/260 (5%) Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTPSSAI 134 Y + ++++ +++ YF + D +T + I S + KH ++ Sbjct: 36 YLELLEQKRYSLSTIKAYKIYFSDFMEYHKGQDLDLLTVEDINSYMLHMVKEKHISATQQ 95 Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194 + + VR+ + R K ++E+M+ + S R Sbjct: 96 NMRINAIKFYYEKVRKGKRQY--YGGIARAKEYKALPEVLSREEMKSIFAQLSNRKH-RC 152 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-----ITVELPDGFMKLLAMTP 249 + +GLR S+ Q + + I+ G ++ +L + Sbjct: 153 MISLIYSAGLRRSELLNLTPQDIISERMLIRIAGKGKKCRYSLLSEKLLNELRDYYREYR 212 Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHEL 307 K F ++ + + K A KAG+ H +R AT + G + Sbjct: 213 PQKWLFEGEQAGEQYSPSALVKILKEAARKAGIKHRVHLHMLRHTFATHLLEQGTDLRTI 272 Query: 308 MATYGWKTVDQAETYTKGAD 327 G + Y ++ Sbjct: 273 QELMGHTDIKTTAIYLHVSN 292 >gi|237711592|ref|ZP_04542073.1| site-specific recombinase [Bacteroides sp. 9_1_42FAA] gi|229454287|gb|EEO60008.1| site-specific recombinase [Bacteroides sp. 9_1_42FAA] Length = 381 Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 48/237 (20%), Positives = 79/237 (33%), Gaps = 13/237 (5%) Query: 117 KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV---ERPKRKTEGIRP 173 +H +P SA ++ AVR E + NP +++ ER K Sbjct: 149 QHTYKTRWGNPLSPKSAADYVGYFSTALNAAVRAEVIPENPIMTLAPTERIKVPESKREY 208 Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT----QKT 229 T ++++ + A+ F Y GLR SD + + + + QKT Sbjct: 209 LTIDEIKALIDTECPREDVKRAYLFSCYCGLRLSDIYALRWKDIFLDGEQYRVSTVMQKT 268 Query: 230 GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--H 287 T I + L ++ L + I + A AG+ K H Sbjct: 269 TTPIYLPLSRHAVRWLPERDGEGDELKIFA-GLPAEPN-INKVLAKWAVAAGITKKITYH 326 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344 R AT+ GA + G V + Y K D + ++ + SV D Sbjct: 327 TSRHSFATMMLTLGADLYTTSKLLGHSNVKTTQIYAKIVDSKK--VEAVNLVDSVFD 381 >gi|297589909|ref|ZP_06948549.1| integrase [Staphylococcus aureus subsp. aureus MN8] gi|297577037|gb|EFH95751.1| integrase [Staphylococcus aureus subsp. aureus MN8] gi|315193060|gb|EFU23461.1| hypothetical protein CGSSa00_09058 [Staphylococcus aureus subsp. aureus CGS00] Length = 402 Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 63/385 (16%), Positives = 128/385 (33%), Gaps = 62/385 (16%) Query: 17 RHGKIIYYFRK---GHGRRIRLPYPHESTF----IPAYMSALTGSTPKREYINSPRKKPT 69 + G + +R + Y S F + + + + +P + Sbjct: 18 KRGNT-WRYRISLGKDAETGKYKYISNSGFKRKSDAKHHAEMVERQLRNGDYIAP--STS 74 Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129 T K + ++ S + + V+S + E + I + + + I + V Sbjct: 75 TFKQVADDWI-SQYANEVKVSSVRAREKAINHAIERFNNKPIQTINKHEYQRFVNDISAQ 133 Query: 130 PSSA--IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK--------TEGIRP-WTKED 178 S + S ++FK+A + + I P ++RPK+K TE + K++ Sbjct: 134 YSKNYVDSIIASTNMIFKYAYDMKLIRIMPSEGIKRPKKKISVEELEDTEIHKKFLEKDE 193 Query: 179 MQQFKSFWSEGSQPRLAFEF---LLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQ------ 227 + QF P+ +FE L Y+G+R + + NN +I Sbjct: 194 LFQFLEVAKNHHSPQNSFEVFCTLAYTGMRAGELLALKWSDIDFENNTINITKTYYNPNN 253 Query: 228 ----------KTGTII-TVELPDGFMKLLAMTPI------------GKETFFINNDKQKM 264 KT + I + + +KLL F + + + Sbjct: 254 NKKQFQILTPKTESSIGKISVDPHVIKLLKNYKTDVQDTWKNELYVDNNFVFTDVNGYPL 313 Query: 265 NATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE- 320 + +W KA K + S H R + +AG E+ K ++ Sbjct: 314 VIKKLQLWIKAILKKTDITNKQISTHSFRHTHCALLIEAGVHIKEIQERLRHKDINTTMN 373 Query: 321 TYTKGADRIRLGIKNSRRISSVVDS 345 Y K + + S++ S ++++ Sbjct: 374 IYAKITNSYKK--DASQKFSKLMEN 396 >gi|153955558|ref|YP_001396323.1| integrase-related protein [Clostridium kluyveri DSM 555] gi|219855951|ref|YP_002473073.1| hypothetical protein CKR_2608 [Clostridium kluyveri NBRC 12016] gi|146348416|gb|EDK34952.1| Integrase-related protein [Clostridium kluyveri DSM 555] gi|219569675|dbj|BAH07659.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 416 Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 51/345 (14%), Positives = 108/345 (31%), Gaps = 66/345 (19%) Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVE 124 T + I ++ K LA + ++ +II G K+ HI Sbjct: 66 SGKITFEEFIKKWLKDYAEAELAPKTLYRYKELLYTRIIPALGHIKLNKLQPTHITEFYS 125 Query: 125 SRKH-------TP-----SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172 + + P + + + + A++ ++ NP L ++ PK + + R Sbjct: 126 NLREDGIRNDGKPGGLSERTILHHHRLISSILATAIQWGFILNNPALRLKAPKVEKKEAR 185 Query: 173 PWTKEDMQQFKSFWS-EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ------------- 218 + E+ E + + +Y G+R + + Sbjct: 186 HFNIEETAYVLQLIENEPIKYKTMITLAIYGGMREGELTALTWSDINFDDCTIKINKSLQ 245 Query: 219 ---NNIFSIKTQKTGTIITVELPDGFMKLLAMTPI--------------GKETFFINNDK 261 IK+ KT T + +P M LL + F D Sbjct: 246 HLPGRDTFIKSTKTETTRLISIPISVMTLLKEYKRWQNTEKLKLGNLWHDSDALFTATDG 305 Query: 262 QKMNATQFSIWFKAKATK--------AGV---NKS--------AHGVRKFSATISADAGA 302 + + + S WF K + +KS HG+R SAT+ + G Sbjct: 306 KSIFPSTISKWFLKFIRKHNESIINDDKIPPKDKSKYLLKEVNFHGLRHTSATLLINQGV 365 Query: 303 TAHELMATYGW-KTVDQAETYTKGADRIRLGIKNSRRISSVVDSD 346 + G +T + Y+ + ++ + ++ ++ +++ Sbjct: 366 DITTVSKRLGHARTSTTTDIYSHSLQKA--DVEAADKLENLFNNE 408 >gi|116872216|ref|YP_848997.1| phage integrase family protein [Listeria welshimeri serovar 6b str. SLCC5334] gi|116741094|emb|CAK20214.1| phage integrase family protein [Listeria welshimeri serovar 6b str. SLCC5334] Length = 386 Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 45/264 (17%), Positives = 85/264 (32%), Gaps = 42/264 (15%) Query: 98 YFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS---------------AIQFLTSMRV 142 F++ + R I+++ I + T + + L +R+ Sbjct: 100 IFEKKMEYFYRMRIRDISSQDIEDWMHELSQTATRNSRKQEEITTLSRTYINRILGHLRI 159 Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLAFEF 198 + AV++ + NP SV ++ + W E+ Q+ + E S ++ +E Sbjct: 160 ILNRAVKEGLIERNPVDSVSYFPKENNKVEFWEIEEFQKVMAMIPENSIQNQHRKIIYEM 219 Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-----------------GTIITVELPDGF 241 L Y+GLR + +++ I +KT + T+ + Sbjct: 220 LFYTGLRIGELQALSWENVNFEKNQITVEKTLIYQGKNDWYFSTPKTNKSYRTISIGKTL 279 Query: 242 MKLLAMTP-----IGKETFFINNDKQKMNATQFSIWFKAKATKAG-VNKSAHGVRKFSAT 295 K L IG + D + FS W K A KAG + H +R Sbjct: 280 SKRLKKWQELQRMIGNFEYMSQLDGTFTPSYSFSNWLKDSARKAGVIPIKLHALRHSHVA 339 Query: 296 ISADAGATAHELMATYGWKTVDQA 319 + D + G + Sbjct: 340 LLIDQNIQPLVIQERLGHANIQIT 363 >gi|282904692|ref|ZP_06312567.1| integrase [Staphylococcus aureus subsp. aureus C160] gi|282906371|ref|ZP_06314223.1| integrase [Staphylococcus aureus subsp. aureus Btn1260] gi|283958805|ref|ZP_06376251.1| integrase [Staphylococcus aureus subsp. aureus A017934/97] gi|295428615|ref|ZP_06821242.1| hypothetical protein SIAG_02387 [Staphylococcus aureus subsp. aureus EMRSA16] gi|116282493|gb|ABJ97306.1| integrase [Staphylococcus aureus] gi|282330568|gb|EFB60085.1| integrase [Staphylococcus aureus subsp. aureus Btn1260] gi|282594941|gb|EFB99917.1| integrase [Staphylococcus aureus subsp. aureus C160] gi|283789845|gb|EFC28667.1| integrase [Staphylococcus aureus subsp. aureus A017934/97] gi|295127597|gb|EFG57236.1| hypothetical protein SIAG_02387 [Staphylococcus aureus subsp. aureus EMRSA16] Length = 390 Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 63/385 (16%), Positives = 128/385 (33%), Gaps = 62/385 (16%) Query: 17 RHGKIIYYFRK---GHGRRIRLPYPHESTF----IPAYMSALTGSTPKREYINSPRKKPT 69 + G + +R + Y S F + + + + +P + Sbjct: 6 KRGNT-WRYRISLGKDAETGKYKYISNSGFKRKSDAKHHAEMVERQLRNGDYIAP--STS 62 Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129 T K + ++ S + + V+S + E + I + + + I + V Sbjct: 63 TFKQVADDWI-SQYANEVKVSSVRAREKAINHAIERFNNKPIQTINKHEYQRFVNDISAQ 121 Query: 130 PSSA--IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK--------TEGIRP-WTKED 178 S + S ++FK+A + + I P ++RPK+K TE + K++ Sbjct: 122 YSKNYVDSIIASTNMIFKYAYDMKLIRIMPSEGIKRPKKKISVEELEDTEIHKKFLEKDE 181 Query: 179 MQQFKSFWSEGSQPRLAFEF---LLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQ------ 227 + QF P+ +FE L Y+G+R + + NN +I Sbjct: 182 LFQFLEVAKNHHSPQNSFEVFCTLAYTGMRAGELLALKWSDIDFENNTINITKTYYNPNN 241 Query: 228 ----------KTGTII-TVELPDGFMKLLAMTPI------------GKETFFINNDKQKM 264 KT + I + + +KLL F + + + Sbjct: 242 NKKQFQILTPKTESSIGKISVDPHVIKLLKNYKTDVQDTWKNELYVDNNFVFTDVNGYPL 301 Query: 265 NATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE- 320 + +W KA K + S H R + +AG E+ K ++ Sbjct: 302 VIKKLQLWIKAILKKTDITNKQISTHSFRHTHCALLIEAGVHIKEIQERLRHKDINTTMN 361 Query: 321 TYTKGADRIRLGIKNSRRISSVVDS 345 Y K + + S++ S ++++ Sbjct: 362 IYAKITNSYKK--DASQKFSKLMEN 384 >gi|158341559|ref|YP_001522723.1| phage integrase [Acaryochloris marina MBIC11017] gi|158311800|gb|ABW33409.1| phage integrase [Acaryochloris marina MBIC11017] Length = 337 Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 56/303 (18%), Positives = 110/303 (36%), Gaps = 32/303 (10%) Query: 49 SALTGSTPKREYINSPRKKPTTLKWL-ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG 107 A+T R + P+ P L W+ + E+ +S ++ N+R ++E Q + Sbjct: 14 QAITPIDTARSRTHPPQTTPADLLWMRVGEFMRS---REISSNTRKAYERDLKQFMD-WT 69 Query: 108 DFDYRKITTKHIRSGVESRKHTP---------SSAIQFLTSMRVLFKWAVRQEYVAINPC 158 D + +IT + + K P ++ + L +++ FKW ++Y+ +P Sbjct: 70 DKGWHEITARDLDRYKNHLKTEPNQRGQLRRNATINRNLAALQSFFKWLTVRDYIPKDPT 129 Query: 159 LSVERPKRKTEGIRPWTKEDMQQ-FKSFWSEGSQPRLAFEF--LLYSGLRCSDSCRAGVQ 215 L +E+ K + ++++++ + +++ G L+ GLR S+ R V Sbjct: 130 LLLEKLKADPVLPQEFSQDEVDKLYQAICDRGFHAFRDRALLHLIDHGLRASEIHRLNVG 189 Query: 216 HLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTP----------IGKETFFI----NNDK 261 +I+ K ++ TV L K + F+ N+ Sbjct: 190 DYDGQRITIRVAKADSVGTVPLLKKARKAIDQYKQWREQQGDVLENDSPLFVSHSNNSKG 249 Query: 262 QKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320 Q++ FKA A A V N H R AT + + Sbjct: 250 QRLQYWGIYKIFKAIAEIAEVENAHPHRGRHTLATQLVMKDMDSVLARRITCHASEQSFV 309 Query: 321 TYT 323 Y+ Sbjct: 310 RYS 312 >gi|71904526|ref|YP_281329.1| DNA integration/recombination/invertion protein [Streptococcus pyogenes phage 6180.4] gi|94991460|ref|YP_599560.1| DNA integration/recombination/inversion protein [Streptococcus phage 10270.5] gi|71803621|gb|AAX72974.1| DNA integration/recombination/invertion protein [Streptococcus pyogenes phage 6180.4] gi|94544968|gb|ABF35016.1| DNA integration/recombination/inversion protein [Streptococcus phage 10270.5] Length = 387 Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 62/321 (19%), Positives = 106/321 (33%), Gaps = 52/321 (16%) Query: 50 ALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGD 108 A+ G T K + + K+ T L W Y+ + + NSR S E I+ GD Sbjct: 55 AMNGYTVKEKPTVTTYKELTALWW--ESYKNT-----IKPNSRQSMEGIVRLHILPAFGD 107 Query: 109 FDYRKITTKHIRSGVESRKHTPSS------AIQ-FLTSM-RVLFKWAVRQEYVAINPCLS 160 K+TT I+ V + + A FL ++ R + ++ V + + NP Sbjct: 108 CKLSKLTTPVIQQQVNKWANNANKGIKGAYANYSFLNNINRRILQYGVTMQVIEHNPARD 167 Query: 161 VERPKRKTEGIRP---WTKEDMQQFKSFWS-------EGSQPRLAFEFLLYSGLRCSDSC 210 V P+++ ++ ++++QF ++ E + ++ LL +G R + Sbjct: 168 VIIPRKQNNKEHKVKFFSNQELKQFLNYLDDLDLSSYENFFDYVLYKTLLATGCRIGEVL 227 Query: 211 RAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ-------- 262 + +IK KT L I + T + + Sbjct: 228 ALEWSDIDLKKGTIKVSKTLNRYQETNTPKSKAGLRDIEIDRATVLLLKQYKNRQQVLSW 287 Query: 263 -----------KMNATQ-----FSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAH 305 + AGV + S HG R ATI AG A Sbjct: 288 DLGRSETIVFTPFTTKYAYACLLRKRLQKHFKAAGVPDISFHGFRHTHATIMLYAGIEAK 347 Query: 306 ELMATYGWKTVDQA-ETYTKG 325 +L G + TY Sbjct: 348 DLQYRLGHSNISMTLNTYVHA 368 >gi|300115010|ref|YP_003761585.1| integrase family protein [Nitrosococcus watsonii C-113] gi|299540947|gb|ADJ29264.1| integrase family protein [Nitrosococcus watsonii C-113] Length = 310 Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 44/247 (17%), Positives = 87/247 (35%), Gaps = 30/247 (12%) Query: 115 TTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174 T + + + R + + + +KWA++ V +P ++PKR Sbjct: 59 TEQFVAWQMRERGTKAHIVARRSSCLGSFYKWAMKNALVESDPIYLADKPKRPYRIPVWL 118 Query: 175 TKEDMQQFKSFWSE----------GSQPR---------LAFEFLLYSGLRCSDSCRAGVQ 215 KE+ F+ ++ + F +L SGLR S++ V+ Sbjct: 119 EKEEQLAFQEAVQRTEDLPENIFGHTRAHIKTVRRRYDVLFGLILNSGLRISEALAVKVR 178 Query: 216 HLQN-NIFSIKTQ---KTGTIITVELPDG----FMKLLAMTPIGKETFFINNDKQKMNAT 267 ++ N + + K V LP+ L +G F ++ + Sbjct: 179 DVRVVNGIAKSVRIIGKGNRERLVPLPEAFGQVLGAWLQDRAVGDFVFAKAPGEKPLGPH 238 Query: 268 QFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 + + +AG++K + H +R AT +AGA ++ A G + + YT Sbjct: 239 AVRAYLRRLIERAGIDKPVTPHKLRHTYATRLLEAGAELVDIQALLGHVDLSTTQIYTH- 297 Query: 326 ADRIRLG 332 R+ Sbjct: 298 VSEERMA 304 >gi|82543521|ref|YP_407468.1| integrase for prophage [Shigella boydii Sb227] gi|81244932|gb|ABB65640.1| putative integrase for prophage [Shigella boydii Sb227] Length = 214 Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 33/194 (17%), Positives = 57/194 (29%), Gaps = 14/194 (7%) Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL 200 ++ W + YV NPC V + K K T ++ Q S +A E Sbjct: 3 SRVYSWGYERGYVKANPCAGVSKFKAKNRERYV-TDKEYQAVLSVAPL--PVFIAMEIAY 59 Query: 201 YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTP--IGKETFFIN 258 R SD + + N+ I+ KTG + N Sbjct: 60 LCAARVSDVLSLKWEQIGNDGIFIQQGKTGKKQIKAWSPRLQAAIEKAKQLPTSAYVISN 119 Query: 259 NDKQKMNATQFSIWFKAKATKAG------VNKSAHGVRKFSATISADAGATAHELMATYG 312 + F+ + +AG + + H + K + ++ + G Sbjct: 120 QYGNRYMYKGFNEMWVEARNRAGKISGILTDFTFHDL-KAKGISDYE--GSSRDKQLFSG 176 Query: 313 WKTVDQAETYTKGA 326 KT Q Y + Sbjct: 177 HKTEGQVLIYDRKV 190 >gi|291516261|emb|CBK69877.1| Site-specific recombinase XerD [Bifidobacterium longum subsp. longum F8] Length = 319 Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 36/289 (12%), Positives = 92/289 (31%), Gaps = 15/289 (5%) Query: 64 PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123 P ++ + + L++ + + + + +ES + + +I + +R + Sbjct: 34 PTQETSAPQNLLTLFLTAKEVEGCSPKTIAYYESTLQHMTQALA-KPCTRINSDDLREYL 92 Query: 124 ESRKHTPSS----AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179 ++ + M F W ++Y+ +P + R K + E++ Sbjct: 93 NRYENERHAGKVTIDNIRRIMSSFFAWLEDEDYIVKSPVRRIHRVKTAVMAKEVLSDENL 152 Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELP 238 + + + + L +G+R + + + + T K V Sbjct: 153 ETLRDRCGT-LRDLAIVDILASTGMRVGELVGLNIADVNLQERECLVTGKGNKQRPVYFD 211 Query: 239 DG----FMKLLAMTPIGKETFF--INNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRK 291 L F +N D +++ + AG+++ H R+ Sbjct: 212 ARTKLHLTAYLQSRNDSNPALFVALNGDGDRISIGGIESRLRQLGKDAGIHRVHPHKFRR 271 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340 AT + D G ++ G +D Y ++ + + R + Sbjct: 272 TLATHAIDKGMPIEQVQKLLGHARIDTTMHYA-MVNQNNVKASHRRYLE 319 >gi|226949169|ref|YP_002804260.1| site-specific recombinase, phage integrase family [Clostridium botulinum A2 str. Kyoto] gi|226843724|gb|ACO86390.1| site-specific recombinase, phage integrase family [Clostridium botulinum A2 str. Kyoto] Length = 330 Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 46/294 (15%), Positives = 97/294 (32%), Gaps = 47/294 (15%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFD----QIIRKSGDFDYRKITTKHIRSGVESRKH-- 128 I E+ +L+ + +S+E + + G D +K+T K IR + K+ Sbjct: 8 IDEFMIYCESKNLSKKTMMSYEQTLRLFTKYLEEEKGIGDVKKVTEKMIREYINYTKNRG 67 Query: 129 --------------TP------------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE 162 TP ++ ++ +++V F + + Q Y+ + +++ Sbjct: 68 KYTIVGDKETLKTNTPEMRKDYGKKVSITTINNYIRNIKVFFNFLLEQSYIKKDVVKNIK 127 Query: 163 RPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ 218 + K + + T + + L LL +G+R + V+++ Sbjct: 128 QFKNQRKAKEFITDSQFAELLRHIDTTKFHERRDHLCIMLLLDTGMRIGECLEIKVENID 187 Query: 219 NNIFSI------KTQKTGTIITVE--LPDGFMKLLAMTP--IGKETFFINNDKQKMNATQ 268 N SI K + + + L + + F + Sbjct: 188 MNYRSILLPAEDTKGKRDRYVYFSQVMNKELRRWLQYKDRYVESDYLFCTTKGTPVLIRT 247 Query: 269 FSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321 F K A +AG+ + H +R A +G + + L G +V E Sbjct: 248 FERKLKDYANRAGLKDIHPHQLRNNFAKRFLMSGGSIYILSQVLGHSSVKVTEQ 301 >gi|227818829|ref|YP_002822800.1| transposase number 1 for insertion sequence NGRIS-16a [Sinorhizobium fredii NGR234] gi|227819104|ref|YP_002823075.1| transposase number 1 for insertion sequence NGRIS-16b [Sinorhizobium fredii NGR234] gi|227819152|ref|YP_002823123.1| transposase number 1 for insertion sequence NGRIS-16c [Sinorhizobium fredii NGR234] gi|227819580|ref|YP_002823551.1| transposase number 1 for insertion sequence NGRIS-16d [Sinorhizobium fredii NGR234] gi|227819591|ref|YP_002823562.1| transposase number 1 for insertion sequence NGRIS-16e [Sinorhizobium fredii NGR234] gi|227820371|ref|YP_002824342.1| transposase number 1 for insertion sequence NGRIS-16f [Sinorhizobium fredii NGR234] gi|227822209|ref|YP_002826180.1| putative transposase number 1 for insertion sequence NGRIS-16h [Sinorhizobium fredii NGR234] gi|227823694|ref|YP_002827667.1| putative transposase number 1 for insertion sequence NGRIS-16 [Sinorhizobium fredii NGR234] gi|36959087|gb|AAQ87512.1| Putative integrase/recombinase Y4QK [Sinorhizobium fredii NGR234] gi|227337828|gb|ACP22047.1| putative transposase number 1 for insertion sequence NGRIS-16a [Sinorhizobium fredii NGR234] gi|227338103|gb|ACP22322.1| putative transposase number 1 for insertion sequence NGRIS-16b [Sinorhizobium fredii NGR234] gi|227338151|gb|ACP22370.1| putative transposase number 1 for insertion sequence NGRIS-16c [Sinorhizobium fredii NGR234] gi|227338579|gb|ACP22798.1| putative transposase number 1 for insertion sequence NGRIS-16d [Sinorhizobium fredii NGR234] gi|227338590|gb|ACP22809.1| putative transposase number 1 for insertion sequence NGRIS-16e [Sinorhizobium fredii NGR234] gi|227339370|gb|ACP23589.1| putative transposase number 1 for insertion sequence NGRIS-16f [Sinorhizobium fredii NGR234] gi|227341209|gb|ACP25427.1| putative transposase number 1 for insertion sequence NGRIS-16h [Sinorhizobium fredii NGR234] gi|227342696|gb|ACP26914.1| putative transposase number 1 for insertion sequence NGRIS-16 [Sinorhizobium fredii NGR234] Length = 286 Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 38/253 (15%), Positives = 93/253 (36%), Gaps = 15/253 (5%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRK--ITTKHIRSGVESRKHTPSSAIQFLTSMRV 142 +L+ ++ S+ + R G R + + + S + + Q + ++R Sbjct: 18 RNLSPATQRSYLHAVTKFSRYFGRSPDRLGLEDVRAFQVHLVSSGLSWPALNQTVCALR- 76 Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS 202 F + V + I P + + + +++ +F + R A + Sbjct: 77 -FFFGVTLGHAEI-P-ERIAYARTPAKLPTILNGDEIVRFLEAVPS-LKTRTALTTAYAA 132 Query: 203 GLRCSDSCRAGVQHLQN--NIFSIKTQKTGTIITVELPDGFMKLLAM-TPIGKETFFI-- 257 GLR +++ V ++ + I+ K G V L + +L + + + ++ Sbjct: 133 GLRATETVSLKVSNIDGERGVIRIEHGKGGKDRNVMLSAQLLHILRVYWKLVRPQVWLFP 192 Query: 258 -NNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWK 314 ++ + ++ ++ AG++K S H +R AT ++G + G Sbjct: 193 GRDESKPIDVQVLHSACRSARAAAGIDKRISVHTLRHSFATHLLESGTDIRIIQVLLGHN 252 Query: 315 TVDQAETYTKGAD 327 + YTK ++ Sbjct: 253 NLSTTARYTKVSN 265 >gi|293556237|ref|ZP_06674827.1| site-specific recombinase, phage integrase family [Enterococcus faecium E1039] gi|291601656|gb|EFF31918.1| site-specific recombinase, phage integrase family [Enterococcus faecium E1039] Length = 378 Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 53/365 (14%), Positives = 118/365 (32%), Gaps = 55/365 (15%) Query: 15 RTRHGKIIYYFR--KGHGRRIRLPYPHE---STFIPAYMSALTGSTPKREY-INSPRKKP 68 R R + YYF G R ++ A L+ +Y + + + Sbjct: 6 RKRGKRWYYYFEDINDDGSRKKVEKVGGDTRPEAEAALRKVLSDIDETGQYFLGTDTRVK 65 Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESR- 126 L + + EY K +L N+ ++ + I G ++ +++ + + Sbjct: 66 QYLDFWMEEYVK----LNLKYNTYENYRFTIKNHINGYLGKKKLTDLSPALLQNFINAEF 121 Query: 127 -----KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK-----TEGIRPWTK 176 K T + L + + + + NP L V+ PK + + ++ + Sbjct: 122 KKGYSKKTMTITHSVLKNALNMAVY--PWGLIKQNPMLYVKIPKYEERPTTKKDLKIISL 179 Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK-------- 228 ED EG + Y+G+R + C ++ + +I +K Sbjct: 180 EDFDHMLEITPEGHPFYIPLNIGFYTGMRVGEVCGLTWDNVDFSNGTITVEKQMVKNGGA 239 Query: 229 --------TGTIITVELPDGFMKLLAMTP--------------IGKETFFINNDKQKMNA 266 + + T+ + + +L I D + + Sbjct: 240 WVYGTPKTSSSNRTIFIGQTLLAILKKHKKQQLENRMKYGKLYIDSNAVCTKEDGELVTP 299 Query: 267 TQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKG 325 + + + ++ + H +R AT+ + GA E+ G + +TY+ Sbjct: 300 SVVKWNTRRISNALSLSFNFHSLRHTHATLLLENGAKMKEISERLGHSRISITMDTYSHV 359 Query: 326 ADRIR 330 D++R Sbjct: 360 TDKMR 364 >gi|91792496|ref|YP_562147.1| phage integrase [Shewanella denitrificans OS217] gi|91714498|gb|ABE54424.1| phage integrase [Shewanella denitrificans OS217] Length = 296 Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 40/266 (15%), Positives = 90/266 (33%), Gaps = 18/266 (6%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KH 128 L ++ + + ++ +I D K+TT ++ H Sbjct: 9 FDCLYQQHLTNLTLQGKRPATIDAYSRAVRRIAAYF-DCCPDKLTTADLKRYFADLIASH 67 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 + S+ ++ ++ + Q + LS+ +P + T ++ S + Sbjct: 68 SWSTVKLDRNGLQFFYRHVLNQAWQW----LSIVKPPQVNHLPDILTPAEVSMVISL-TH 122 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF--SIKTQKTGTIITVELPDGFMKLLA 246 + ++ F L GLR ++ + + + + I+ K G + LP ++ L Sbjct: 123 KLRYQVCFLTLYSMGLRLGEAVSLQIGDIDSQLMQVHIRDAKGGKDRLIPLPQRTLQALR 182 Query: 247 ---MTPIGKETFFINNDKQK---MNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISA 298 T F D + M+ K ++ ++KS H +R AT Sbjct: 183 YYWQTHRHPRYLFPGKDGKPNSLMDRGGIQKAMKKVISECHIHKSISPHNLRHSYATHLL 242 Query: 299 DAGATAHELMATYGWKTVDQAETYTK 324 + G + G +++ YT+ Sbjct: 243 EQGLDLRSVQQLLGHNSLNTTARYTR 268 >gi|166031854|ref|ZP_02234683.1| hypothetical protein DORFOR_01555 [Dorea formicigenerans ATCC 27755] gi|166028307|gb|EDR47064.1| hypothetical protein DORFOR_01555 [Dorea formicigenerans ATCC 27755] Length = 361 Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 53/331 (16%), Positives = 112/331 (33%), Gaps = 42/331 (12%) Query: 41 STFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFE-SYF 99 F Y A+ + + IN +L+ + + + + F Sbjct: 36 PPFAKDYFRAMEPKSSAKTRINYAYDIRVFFHFLLE---NNPIYKNY---TMDQFRVQDL 89 Query: 100 DQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCL 159 ++I +Y + + R E + + ++++R + + + +Y+A NP L Sbjct: 90 ERI-EPVDIEEYMEYLKVYKREDNEMITNGERGLKRKMSALRSFYSYYFKHQYIATNPTL 148 Query: 160 SVERPKRKTEGIRPWTKEDMQQFKSFWSEG----------------SQPRLAFEFLLYSG 203 V+ PK + I +++ + ++ LL +G Sbjct: 149 LVDMPKLHDKAIIRLDIDEVAMLLDYVESAGEHLTGQALAYYQKTKNRDLAILTLLLGTG 208 Query: 204 LRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLA---------MTPIGK 252 +R S+ + + NN ++ T+K G+ + V D L +TP+ Sbjct: 209 IRVSECVGLNLTDVDFKNNGITV-TRKGGSQMVVYFGDEVADALENYIEADRKVITPLSG 267 Query: 253 --ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELM 308 E F++ +++M K A + NK + H +R T + + Sbjct: 268 HEEALFLSTQRKRMGVQAIENMVKKYARQVTPNKKITPHKLRSTYGTSLYKETGDIYLVA 327 Query: 309 ATYGWKTVDQA-ETYTK-GADRIRLGIKNSR 337 G K V+ + Y DR R+ + Sbjct: 328 DVLGHKDVNTTKKHYAAIDEDRRRMAASAVK 358 >gi|160915626|ref|ZP_02077834.1| hypothetical protein EUBDOL_01633 [Eubacterium dolichum DSM 3991] gi|158432102|gb|EDP10391.1| hypothetical protein EUBDOL_01633 [Eubacterium dolichum DSM 3991] Length = 403 Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 52/377 (13%), Positives = 106/377 (28%), Gaps = 71/377 (18%) Query: 12 TKERTRHGKIIYYFRK--GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69 TR G + Y R G+++ L A + P Sbjct: 11 YGTVTRKGVLYYRTRILDADGKQVSLYGTTCEELYDKEQEARRQVAEIIFHREHPTVAEY 70 Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKH 128 KWL+ + SA ++ + + S + II+ GD ++T IR + + Sbjct: 71 CEKWLLMQ---SAK---VSPATLKGYASNMKNYIIKPLGDMYMEEVTADDIRLALIPLSN 124 Query: 129 TPSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVE-RPKRKTEGIRPWTKEDMQQFKSFW 186 S + + + A R + + NPC + + + T+ T + ++ Sbjct: 125 KSESLHNTVNMLLKCIFYSAERSQLLEYNPCEGISAKGGKPTQKKDSLTDQQVEVLLETV 184 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL-------------------QNNIFSIKTQ 227 G P L LY+GLR ++ + + S + Sbjct: 185 K-GLPPYLFTMIGLYAGLRREEALALQWDCVFLDAPTPYISVRRAWRSEHNRPVISTTLK 243 Query: 228 KTGTIITVELPDGFMKLLA--MTPIGKETFFINNDKQKMNATQFSIWFKAKATK------ 279 + +P + L E +++ Q ++ +QF ++ + Sbjct: 244 TKAARRDIPIPKCLVNCLREAKAASKSEYVIADSEGQPLSYSQFKRVWQYIVVRSTKERT 303 Query: 280 -------------------------------AGVNKSAHGVRKFSATISADAGATAHELM 308 + + H +R T AG + Sbjct: 304 YYKYVNGQSIKYTVQPSLGGHQKNNPNIVYSLDFDVTPHLLRHTYITNLLYAGVDPKTVQ 363 Query: 309 ATYGWKTVDQA-ETYTK 324 G + + Y + Sbjct: 364 YLAGHENSKTTMDIYAR 380 >gi|37522020|ref|NP_925397.1| integrase/recombinase [Gloeobacter violaceus PCC 7421] gi|35213019|dbj|BAC90392.1| glr2451 [Gloeobacter violaceus PCC 7421] Length = 289 Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 39/255 (15%), Positives = 91/255 (35%), Gaps = 14/255 (5%) Query: 85 GSLAVNSRISFESYFDQIIR--KSGDFDYRKITTK--HIRSGVESRKHTPSSAIQFLTSM 140 SLA N+ +++ ++ R +S D++ H + + + HTP SA + L+++ Sbjct: 18 RSLAGNTLKAYQRDLEEFARFVESEHLDWQTFGATGTHHFAQILQKTHTPRSAARKLSAL 77 Query: 141 RVLFKWAVRQEYVAINP-CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFL 199 R ++ A+ Q + P + P + R + ++ + E L Sbjct: 78 RTFYRHALVQGWAGGVPPACTRTLPSAERGLPRILSVAQTEKLIESAASPL-ESAVLELL 136 Query: 200 LYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGKETF--- 255 +GL+ + C V+ + + Q V + + + + + Sbjct: 137 YATGLKAGELCELRVRDVAFAEAYLSVQPAASQPRVVPVGEPALAAVEAYLGSEPVLPER 196 Query: 256 --FINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATY 311 F+ + +N + A ++ ++ + +R A + GA + Sbjct: 197 WLFVGRQNRPLNRFHIYRIVREAAARSAIDWPVTPDTLRHSFAVHLLEGGADLATVRELL 256 Query: 312 GWKTVDQAETYTKGA 326 G ++ YT+ A Sbjct: 257 GHASLATTGIYTRLA 271 >gi|307720464|ref|YP_003891604.1| integrase family protein [Sulfurimonas autotrophica DSM 16294] gi|306978557|gb|ADN08592.1| integrase family protein [Sulfurimonas autotrophica DSM 16294] Length = 278 Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 35/268 (13%), Positives = 96/268 (35%), Gaps = 33/268 (12%) Query: 75 ISEYRKSA-----HWGSLAVNSRISFESYF------DQIIRKSGDFDYRKITTKHIRSGV 123 I++Y+K + + + ++ +I+++ G + + + +G+ Sbjct: 5 INKYKKEFLVSLEEYRGYSELTVKTYADVLGEAFQYIEIVQEDGHTVFNLMPYRIYIAGL 64 Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEY---VAINPCLSVERPKRKTEGIRPWTKEDMQ 180 ++ + + L+++R ++ Q + + E K +P + + Sbjct: 65 NAK-----TISKKLSAIRSFVEFLNEQGLHVALQAD-----ESIKVAKTLPKPVSHAHI- 113 Query: 181 QFKSFWSEGSQPRLAFEFLLYS-GLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP- 238 ++ Q +L +LY+ GLR S+ + ++ N + K + L Sbjct: 114 -LEALSQSDLQEKL-LAVMLYTLGLRISELASLELHNITNEWIRVI-GKGNKQRDIPLLG 170 Query: 239 --DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATI 296 + T + K+ F + ++++ + + + H +R A+ Sbjct: 171 TTRALIDEYLSTFVVKK-FLFEKNGERLSENSLRYMITKIFKRVALKVTPHQLRHSYASS 229 Query: 297 SADAGATAHELMATYGWKTVDQAETYTK 324 + GA ++ G ++ + YTK Sbjct: 230 LLNGGAPIVDVSELLGHSSMATTQIYTK 257 >gi|291530097|emb|CBK95682.1| Site-specific recombinase XerD [Eubacterium siraeum 70/3] Length = 338 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 32/238 (13%), Positives = 80/238 (33%), Gaps = 27/238 (11%) Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE-RPKRKTEGIRPWTKE------- 177 + + P + + L +++ + + ++ + NP +E K + + Sbjct: 93 KSYKPKTVKRKLATLKAFTHYLLIRDIIDCNPFDKIETSIKEPVILPKTIPLDTIGEILC 152 Query: 178 ----DMQQFKSFWSEGSQPRLA--FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231 +++ + + + S R A E L +G R ++ C Q + S+K G+ Sbjct: 153 FAYTQIEKSNTDYKKNSAIRNAAVLELLFATGARVAEICNLHSQDVDFIGKSVKLYGKGS 212 Query: 232 IITVELPDGFMKLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281 + +P +L + FF+N +++ + G Sbjct: 213 KERI-IPIENTSVLTILSDYYFIHEEKISDCGYFFVNKYGKRLTEQSVRCMINSYCQTCG 271 Query: 282 V--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 + + + H R AT+ + + G ++ + YT + I ++ Sbjct: 272 ISMHITPHMFRHSFATLLLEQDVDIRYIQKLLGHSSITTTQIYTHVTSAKQKEIIKTK 329 >gi|254885206|ref|ZP_05257916.1| integrase [Bacteroides sp. 4_3_47FAA] gi|254837999|gb|EET18308.1| integrase [Bacteroides sp. 4_3_47FAA] Length = 430 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 48/284 (16%), Positives = 97/284 (34%), Gaps = 29/284 (10%) Query: 78 YRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT---TKHIRSGVESRKHTPSSA 133 + KSA +++ + S + D++ +T + + + + ++ Sbjct: 135 FAKSAIDNSDKKQSTKDNLHSTLAVLHDFRSGLDFKDLTYTFLRDFEQYLREKGNAVNTI 194 Query: 134 IQFLTSMRVLFKWAVRQEYVAIN--PCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191 + + +R L A+ Q Y+ + P + K++ T +++++ ++ E Sbjct: 195 AKHMRQLRTLVNEAINQGYMHADAYPFRKYK-IKQEKGRHEFLTPDELKKLETVEVEEES 253 Query: 192 PR---LAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVELPDGFMKL 244 R AF F Y+GLR SD C+ + + KTG I + L + Sbjct: 254 MRHVLDAFLFCCYTGLRYSDFCQLSPANFIKVNGKRWLHFTSVKTGVEIRLPLH--LLFE 311 Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADAGA 302 I I + ++ + + A G+ K H R AT+ G Sbjct: 312 SRALGILDRYPDIGSLASLPCNSEVNKQLRKLAGLCGIKKRITYHVSRHTCATLLVHQGV 371 Query: 303 TAHELMATYGWKTVDQAETYT-----------KGADRIRLGIKN 335 + G +V + Y+ K R R +K Sbjct: 372 AITTVQKLLGHTSVKTTQIYSEVLSSTIVRDLKNVQRKRKKVKM 415 >gi|167751075|ref|ZP_02423202.1| hypothetical protein EUBSIR_02060 [Eubacterium siraeum DSM 15702] gi|167655993|gb|EDS00123.1| hypothetical protein EUBSIR_02060 [Eubacterium siraeum DSM 15702] Length = 338 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 32/238 (13%), Positives = 80/238 (33%), Gaps = 27/238 (11%) Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE-RPKRKTEGIRPWTKE------- 177 + + P + + L +++ + + ++ + NP +E K + + Sbjct: 93 KSYKPKTVKRKLATLKAFTHYLLIRDIIDCNPFDKIETSIKEPVILPKTIPLDTIGEILC 152 Query: 178 ----DMQQFKSFWSEGSQPRLA--FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231 +++ + + + S R A E L +G R ++ C Q + S+K G+ Sbjct: 153 FAYTQIEKSNTDYKKNSAIRNAAVLELLFATGARVAEICNLHSQDVDFIGKSVKLYGKGS 212 Query: 232 IITVELPDGFMKLLAMT----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281 + +P +L + FF+N +++ + G Sbjct: 213 KERI-IPIENTSVLTILSDYYFIHEEKISDCGYFFVNKYGKRLTEQSVRCMINSYCQTCG 271 Query: 282 V--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 + + + H R AT+ + + G ++ + YT + I ++ Sbjct: 272 ISMHITPHMFRHSFATLLLEQDVDIRYIQKLLGHSSITTTQIYTHVTSAKQKEIIKTK 329 >gi|251783530|ref|YP_002997835.1| DNA integration/recombination/inversion protein [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242392162|dbj|BAH82621.1| DNA integration/recombination/inversion protein [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 387 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 61/321 (19%), Positives = 106/321 (33%), Gaps = 52/321 (16%) Query: 50 ALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGD 108 A+ G T K + + K+ T L W Y+ + + NSR S E I+ GD Sbjct: 55 AMNGYTVKEKPTVTTYKELTALWW--ESYKNT-----IKPNSRQSMEGIVRLHILPAFGD 107 Query: 109 FDYRKITTKHIRSGVESRKHTPSS------AIQ-FLTSM-RVLFKWAVRQEYVAINPCLS 160 ++TT I+ V + + A FL ++ R + ++ V + + NP Sbjct: 108 CKLSRLTTPVIQQQVNKWANNANKGIKGAYANYSFLNNINRRILQYGVTMQVIEHNPARD 167 Query: 161 VERPKRKTEGIRP---WTKEDMQQFKSFWS-------EGSQPRLAFEFLLYSGLRCSDSC 210 V P+++ ++ ++++QF ++ E + ++ LL +G R + Sbjct: 168 VIIPRKQNNKEHKVKFFSNQELKQFLNYLDDLDLSSYENFFDYVLYKTLLATGCRIGEVL 227 Query: 211 RAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ-------- 262 + +IK KT L I + T + + Sbjct: 228 ALEWSDIDLEKGTIKVSKTLNRYQETNTPKSKAGLRDIEIDRATVLLLKQYKNRQQVLSW 287 Query: 263 -----------KMNATQ-----FSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAH 305 + AGV + S HG R ATI AG A Sbjct: 288 DLGRSETIVFTPFTTKYAYACLLRKRLQKHFKAAGVPDISFHGFRHTHATIMLYAGIEAK 347 Query: 306 ELMATYGWKTVDQA-ETYTKG 325 +L G + TY Sbjct: 348 DLQYRLGHSNISMTLNTYVHA 368 >gi|310816227|ref|YP_003964191.1| site-specific tyrosine recombinase XerC [Ketogulonicigenium vulgare Y25] gi|308754962|gb|ADO42891.1| site-specific tyrosine recombinase XerC [Ketogulonicigenium vulgare Y25] Length = 307 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 43/275 (15%), Positives = 84/275 (30%), Gaps = 23/275 (8%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGVESRK 127 +WL+ G+ V R ++ + G +I +R+ + + Sbjct: 12 RWLVHSGAIEGKAGATLVAYRHDVSTFLTFMTLHHGGPQGFAAIAQIEVADMRAWMAQMR 71 Query: 128 HTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 T S + L++++ + W +E L+ PK + RP +D ++ Sbjct: 72 GTGLSSRSLARALSAVKGFYTWLAAREGFEPTAVLAARAPKFQRNLPRPLEVDDARRLMD 131 Query: 185 FWSE-------GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL 237 ++ L SGLR S++ + T K G V + Sbjct: 132 RVEVQSNEPWVAARDLAVITLLYGSGLRISEALSLTGEDYPLPDVLRMTGKGGKQRLVPV 191 Query: 238 PDGFMKLLAM-------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HG 288 + P+ F ++ + + G+ SA H Sbjct: 192 LPIAAAAVKDYVRRTPYAPVAGAPLFRGVRGGALSPRIIQKMIEQVRLQLGLPASATPHA 251 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 +R AT AG + G ++ + YT Sbjct: 252 LRHSFATHLLAAGGDLRSIQELLGHASLSTTQAYT 286 >gi|162329627|ref|YP_471302.2| site-specific tyrosine recombinase XerD [Rhizobium etli CFN 42] Length = 317 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 48/274 (17%), Positives = 83/274 (30%), Gaps = 34/274 (12%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTK-----HIRSGVESRKHTPSSAIQFLTS 139 A N+ S+E D + R + + + PSS + L + Sbjct: 20 RGAAANTLQSYERDLDDVRSFLNGRSIRLTEAASADLAAYLASLARQGFKPSSQARRLAA 79 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-------SEGSQP 192 MR +K+ + +P ++ PK+ + E++ + S + G Sbjct: 80 MRQFYKFLYAEGLRTDDPTGVLDAPKKGRPLPKTMGVEEVGRLLSQAQTEADDPAPGQLQ 139 Query: 193 R----LAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLLA- 246 R E L +G+R S+ + L F + K V L + L Sbjct: 140 RRRMLALLELLYATGMRVSELVSLPARVLDQEGRFLMIRGKGNKERLVPLSHSAIAALKS 199 Query: 247 ------------MTPIGKETFFINNDKQKM-NATQFSIWFKAKATKAGVN---KSAHGVR 290 P F K+ F+ K A +AG+ S H +R Sbjct: 200 YGRLLAADAAAAKEPQESPWLFPAASKEGYLPRQVFARDLKNLAIRAGLTPSLISPHVMR 259 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK 324 A+ GA + G + + YT Sbjct: 260 HAFASHLLANGADLRVVQELLGHSDISTTQIYTH 293 >gi|288905839|ref|YP_003431061.1| integrase [Streptococcus gallolyticus UCN34] gi|288732565|emb|CBI14137.1| putative integrase [Streptococcus gallolyticus UCN34] Length = 376 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 53/350 (15%), Positives = 114/350 (32%), Gaps = 64/350 (18%) Query: 48 MSALTGSTPKREYINSPRK------KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ 101 A+ + +K + T+K L E+ + ++ + + Sbjct: 36 TRAVQAEAKRILEDKISKKNSVRLLQAETVKELYEEWLVIRK-MEVKPSTLQTQMGIMNG 94 Query: 102 IIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV 161 I+ G+ +I + +++ + ++ + + LF +A Y+ NP V Sbjct: 95 FIKIFGNEKLTRIKSAALQTYLLAKDWSYGYRNLVKVYLSSLFDYAKTVGYLVDNPMDRV 154 Query: 162 ERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF----------------EFLLYSGLR 205 PK K T+E+++ + + Q RL EFL +GLR Sbjct: 155 VLPKYKV------TQEEIELKREHYLSRQQIRLYLNILDTEGKNPIFNILVEFLYLTGLR 208 Query: 206 CSDSCRAGVQHLQ--NNIFSIK------TQKTGTIITVE-----------------LPDG 240 ++ + I +++ +K+ IT L D Sbjct: 209 IGEAQALMWSDIDFETKILTVRHTVQRANKKSDYRITTPKTIHSYRKVYFNSRVVKLLDE 268 Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK------SAHGVRKFSA 294 L ++ K+ F N F+++ + + K ++H R Sbjct: 269 LKCLTSVV-SDKDLVFTNGRGDFFGLDAFNLYIQRYFDNQKIGKPDNFKLTSHVFRHSHV 327 Query: 295 TISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSVV 343 ++ A+ G E+M G + YT + ++ + ++ SV Sbjct: 328 SLLAELGFHVREIMERVGHSDEKTTIQIYTHVTE--KMKQNSFEKLESVA 375 >gi|197250677|ref|YP_002147601.1| integrase [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|205360077|ref|ZP_02834436.2| integrase [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|197214380|gb|ACH51777.1| integrase [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|205341129|gb|EDZ27893.1| integrase [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] Length = 336 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 55/305 (18%), Positives = 110/305 (36%), Gaps = 19/305 (6%) Query: 26 RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWG 85 R G+RIR + +S Y + + +E+ + P L LI+ + + Sbjct: 24 RGTSGKRIRRKFNRKSE-AQTYEKYVLTNFHDKEWQDKP-ADRRLLSDLIALWW---SYH 78 Query: 86 SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH---TPSSAIQFLTSMRV 142 N S++ ++I R+ G+ ++T + SR H + + + +M Sbjct: 79 GKNHNYGDSYKKRLEKINREMGEPRVYELTRNFLMKYRASRLHDGVSAGTVNRDFCTMSS 138 Query: 143 LFKWAVR-QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY 201 +F+ + +E+ NP V + + + + ++E+++ + R L Sbjct: 139 MFRLLIDMEEFHHENPFHKVRKLRLENTEMSFLSEEEIRDLLMALT--GDDRRVVVLCLN 196 Query: 202 SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK 261 +G R ++ +H+ +N + KTG TV + + GK F N Sbjct: 197 TGARWGEASNLKAEHVISNRVTFVKTKTGPARTVPISQEIADYILTRKSGK--LFDTNY- 253 Query: 262 QKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321 + + ++ H +R AT G L G T++Q T Sbjct: 254 -----ERVRDVLRKVKPDLPRGQALHVLRHTFATHFMINGGNIITLQRILGHTTIEQTMT 308 Query: 322 YTKGA 326 Y A Sbjct: 309 YAHFA 313 >gi|209965542|ref|YP_002298457.1| tyrosine recombinase XerC, putative [Rhodospirillum centenum SW] gi|259710436|sp|B6IPE2|XERC_RHOCS RecName: Full=Tyrosine recombinase xerC gi|209959008|gb|ACI99644.1| tyrosine recombinase XerC, putative [Rhodospirillum centenum SW] Length = 341 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 47/268 (17%), Positives = 89/268 (33%), Gaps = 30/268 (11%) Query: 85 GSLAVNSRISFESYF--------DQIIRKSGDFDYRKITTKHIRSGVESRKHTPS---SA 133 + ++ S+ + + R G D + R+ + +R + + Sbjct: 31 RGASTHTLRSYRADLAGFLAFVAEHRGRPPGLNDLGALDLGAFRAWLAARAADGAGAATR 90 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSV-ERPKRKTEGIRPWTKEDMQQFKSFWS----- 187 + ++ +R F+WA R + NP +++ PK + RP +D + Sbjct: 91 SRGVSGVRSFFRWADRSGLL-HNPAIALLTAPKAQRPLPRPLAADDAALLLEEAAAVPEA 149 Query: 188 --EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKL 244 G + R F L GLR S++ L S++ K G V + + Sbjct: 150 PWIGLRDRALFTLLYGCGLRISEAIGLNRSDLPAGAASVRVLGKGGKQRDVPVLPAVREA 209 Query: 245 ----LAMTPIGKE---TFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSAT 295 LA P G F+ +++ + G+ S H +R AT Sbjct: 210 VAAYLAAVPWGGGRAAPLFVGAKGDRLSPDVARRQMRHLRALLGLPDSTTPHALRHSFAT 269 Query: 296 ISADAGATAHELMATYGWKTVDQAETYT 323 GA + G ++ + YT Sbjct: 270 HLLGGGADLRAIQDLLGHASLSTTQRYT 297 >gi|222150032|ref|YP_002550989.1| site-specific tyrosine recombinase XerC [Agrobacterium vitis S4] gi|221737014|gb|ACM37977.1| site-specific tyrosine recombinase XerC [Agrobacterium vitis S4] Length = 322 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 42/275 (15%), Positives = 85/275 (30%), Gaps = 29/275 (10%) Query: 85 GSLAVNSRISFES----YFDQIIRKSGDFD----YRKITTKHIRSGVESRKHTPSSAI-- 134 LA ++ ++E + + G + + +R+ + SR+ + A Sbjct: 38 RRLADHTLTAYERDTRQFLGFLTGYFGGPPSIDDIKALRPSDLRAFLSSRRKEGAGARSL 97 Query: 135 -QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM-------QQFKSFW 186 + L +R L ++ R+ V ++ PK+ +P + Q Sbjct: 98 GRHLAGVRSLLRYLERKGLVNAAGAGAIRSPKQPKSLPKPLSAAQALTVVAAETQLNEEP 157 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT-VELPDGFMKLL 245 ++ F L GLR S++ + +++ G V L + + Sbjct: 158 WIAARDAAVFALLYGCGLRISEALDLTPADIVATTTTLRVTGKGNKTRLVPLLPIVRQAV 217 Query: 246 AMTP-------IGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATI 296 E F K+ + + G+ + H +R AT Sbjct: 218 ESYQSLCPYHLPATEPLFRGARGGKLQQGIIQREMQRLRSALGLPDTATPHALRHSFATH 277 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 G + G ++ + YT G D RL Sbjct: 278 LLSGGGDLRTIQELLGHASLSTTQIYT-GVDSARL 311 >gi|126436488|ref|YP_001072179.1| phage integrase family protein [Mycobacterium sp. JLS] gi|126236288|gb|ABN99688.1| phage integrase family protein [Mycobacterium sp. JLS] Length = 387 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 51/320 (15%), Positives = 104/320 (32%), Gaps = 34/320 (10%) Query: 55 TPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRK 113 TP E + + TL+ + + LA +R ++ + D I+ GD + Sbjct: 73 TPPAERAARRQAEKLTLRTYAKTWLDNK--TKLARRTRDNYRGHLDNHILPVLGDLGLAE 130 Query: 114 ITTKHIRSGVESRKHTPSSAI-QFLTSMRVLFKWAVRQEYVAINPC--LSVERPKRKTEG 170 IT +H+R+ + Q + +F AV + + NPC + K Sbjct: 131 ITPEHVRTWFAGLGTEHDTRNAQAYAILNGVFNTAVADDLIERNPCRIKGAAQVKHAKRS 190 Query: 171 IRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK-- 228 + + + + + RLA + LR + + + +++ ++ Sbjct: 191 VVLLDAAQLTELAAAMPD--DARLAVLLAGWCALRKGEVFALRRCDIAADGSTVRIERAV 248 Query: 229 --------------TGTIITVELPDGFM-----KLLAMTPIGKETFFINND--KQKMNAT 267 + V +P L G E Sbjct: 249 TYREGKFEVGPTKTRESRRVVSVPPHVRPAVVDHLARHVGEGDEALVFTEPSTGSFAGEK 308 Query: 268 QFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 +F ++A G H +R ++A AGAT E+M G + + A Y A Sbjct: 309 RFRTAWEAAREAIGQPQLHFHDLRHAGGVMAAQAGATLREVMDRLGHTSPNMAMRYQHTA 368 Query: 327 DRIRLGIKNSRRISSVVDSD 346 + + ++S++ ++ Sbjct: 369 EGR--AAALADKLSALAATN 386 >gi|283771192|ref|ZP_06344083.1| integrase [Staphylococcus aureus subsp. aureus H19] gi|283459786|gb|EFC06877.1| integrase [Staphylococcus aureus subsp. aureus H19] Length = 390 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 63/385 (16%), Positives = 129/385 (33%), Gaps = 62/385 (16%) Query: 17 RHGKIIYYFRK---GHGRRIRLPYPHESTF----IPAYMSALTGSTPKREYINSPRKKPT 69 + G + +R + Y S F + + + + +P + Sbjct: 6 KRGNT-WRYRISLGKDAETGKYKYISNSGFKRKSDAKHHAEMVERQLRNGDYIAP--STS 62 Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129 T K + ++ S + + V+S + E + I + + + I + V Sbjct: 63 TFKQVADDWI-SQYANEVKVSSVRAREKAINHAIERFNNKPIQTINKHEYQRFVNDISAQ 121 Query: 130 PSSA--IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK--------TEGIRP-WTKED 178 S + S ++FK+A + + I P ++RPK+K TE + K++ Sbjct: 122 YSKNYVDSIIASTNMIFKYAYDMKLIRIMPSEGIKRPKKKISVEELEDTEIHKKFLEKDE 181 Query: 179 MQQFKSFWSEGSQPRLAFEF---LLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQ------ 227 + QF P+ +FE L Y+G+R + + NN +I Sbjct: 182 LFQFLEVAKNHHSPQNSFEVFCTLAYTGMRAGELLALKWSDIDFENNTINITKTYYNPNN 241 Query: 228 ----------KTGTII-TVELPDGFMKLLAMTP------------IGKETFFINNDKQKM 264 KT + I + + +KLL + F + + + Sbjct: 242 NKKQFQILTPKTESSIGKISVDPHVIKLLKNYKVDVQDTWKNELYVDNNFVFTDVNGYPL 301 Query: 265 NATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE- 320 + +W KA K + S H R + +AG E+ K ++ Sbjct: 302 VIKKLQLWIKAILKKTDITNKQISTHSFRHTHCALLIEAGVHIKEIQERLRHKDINTTMN 361 Query: 321 TYTKGADRIRLGIKNSRRISSVVDS 345 Y K + + S++ S ++++ Sbjct: 362 IYAKITNSYKK--DASQKFSKLMEN 384 >gi|144899499|emb|CAM76363.1| phage integrase [Magnetospirillum gryphiswaldense MSR-1] Length = 427 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 50/308 (16%), Positives = 111/308 (36%), Gaps = 24/308 (7%) Query: 54 STPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFE-SYFDQIIRKSGDFDYR 112 K E + K T + + + LA ++++ ++ + F Q + Sbjct: 95 QIKKAEKQVNEEKAANTFRVAAERFMRQHVEPRLAASTKMDYKWALFGQDTAAWANKPVD 154 Query: 113 KITTKHIRSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170 IT +R +++ + +P+ A + L + F W ++ + + P + ++ P K+ G Sbjct: 155 SITRADVRRALDATIERGSPAGANKLLAYLSKFFNWCAERDLLEVPPTIRIKPPSPKSVG 214 Query: 171 IRPWTKEDM-QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-------IF 222 R ++ + +F +EG F+ LL +G R +++ + + + Sbjct: 215 ERTLNHAEVADVWAAFEAEGGLFCDLFKLLLLTGQRRTETAGMRLSEISDLDGEKPVWEI 274 Query: 223 SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI-------WFKA 275 K V L + ++ PI + F+ + +S W Sbjct: 275 PGNRTKNSRPHAVPLSPQVVAIIKGRPIVGDLGFLLTTTGTTGTSGYSNAKERVDAWIAK 334 Query: 276 KATKAG----VNKSAHGVRKFSATISADA-GATAHELMATYGWKTVDQAETYTKGADRIR 330 + +AG + H +R+ T+ + G H + A + A+ G Sbjct: 335 RREEAGEQPMPRWTLHDLRRTMVTMMNEHVGIAPHVVEACVNHVS-GMAKAGVAGVYNKA 393 Query: 331 LGIKNSRR 338 L + + RR Sbjct: 394 LYMDDRRR 401 >gi|329117413|ref|ZP_08246130.1| site-specific recombinase, phage integrase family [Streptococcus parauberis NCFD 2020] gi|326907818|gb|EGE54732.1| site-specific recombinase, phage integrase family [Streptococcus parauberis NCFD 2020] Length = 362 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 56/343 (16%), Positives = 111/343 (32%), Gaps = 35/343 (10%) Query: 11 VTKERTRHGKIIY----YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66 + + +GK Y Y G++ + T A S + E + Sbjct: 3 IESYKKSNGKTYYKFLLYIGIVDGKKKYIRRSGFETKAKAKASLINLQAELSEP-----Q 57 Query: 67 KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126 T L +++ K + + + I+ K + IT I+ E Sbjct: 58 TNMTFGKLTNQWLKEYEKTVQGSTYLKTERNINNHILPKLSNVKIGDITPLLIQQLTEQW 117 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR---PWTKEDMQQFK 183 + + L +R + A+R Y+ NP L + PK K E + ++ ++++ F Sbjct: 118 CYDLKYGAKILGIVRNILNLAIRYGYLNSNPALPITPPKIKRERKKNNNFYSLDELKIFL 177 Query: 184 SFWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--------------TQ 227 E F L ++G+R + L NN +I T+ Sbjct: 178 KLVDETDDIEKIALFRLLAFTGIRKGELLALTWDDLNNNTLTINKAVTRTFTGLEIDVTK 237 Query: 228 KTGTIITVELPDGFMKLLAMT----PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV- 282 + + L D +++L P F + M + W + + Sbjct: 238 TKSSDRLISLDDETVEILNELHETFPTSTLMF-QSESGGIMTPSLPRKWLLQLTSDTKLP 296 Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTK 324 + HG R A++ ++G + ++ G + YT Sbjct: 297 PITIHGFRHTHASLLFESGLSLKQVQHRLGHGDLQTTMNVYTH 339 >gi|227431405|ref|ZP_03913455.1| bacteriophage integrase [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227352833|gb|EEJ43009.1| bacteriophage integrase [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 375 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 55/347 (15%), Positives = 113/347 (32%), Gaps = 46/347 (13%) Query: 16 TRHGKII----YYFRKGHGRRIRLPYPH------ESTFIPAYMSALTGSTPKREYINSPR 65 ++HGK+ Y R G + R + ++ + K +P Sbjct: 8 SKHGKVYEVVGYIGRHQDGTQARAKKRGFDSKRSAQQWFNNEVALFSNGQSKYNKKTTPN 67 Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVE 124 T+K L + ++ ++ ++ + F+ II GD I ++ + Sbjct: 68 V--MTVKELYDMWLETYQ-HTVEESTLNKTMNVFNVHIIPAWGDTHVTDIKPLDLQRYIN 124 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 + + + +R L AVR + + ++P +E PK + + + D+ +FK+ Sbjct: 125 TMQGKILHYRKITGYLRRLLNIAVRMDMIPVDPFTKIEMPKERRQVNKRKQFMDVDEFKA 184 Query: 185 FWS--------EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKT-------- 226 F Q +G+R + + + SI Sbjct: 185 FLEVLDSQYKYINQQAYTLLRLGALTGMRTEELLALQWEQVDFNGGYISIVQALGRGFNG 244 Query: 227 -----------QKTGTIITVELPDGFMKLLAMTP-IGKETFFINNDKQKMNATQFSIWFK 274 K I ++ ++ + F NN + + + + W Sbjct: 245 GTYIKAPKSQTSKRTLKIDNKMLAVLSDWYEVSHYNSNDDFVFNNQGKTLQVMRPNKWLH 304 Query: 275 AKATKAG--VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319 + K G V S H +R AT++ D GA+ ++ G V Sbjct: 305 DVSDKYGVAVGLSMHKLRHTWATLALDQGASVKQVQTYLGHADVSMT 351 >gi|319949186|ref|ZP_08023275.1| site-specific tyrosine recombinase XerD [Dietzia cinnamea P4] gi|319437172|gb|EFV92203.1| site-specific tyrosine recombinase XerD [Dietzia cinnamea P4] Length = 316 Score = 100 bits (250), Expect = 3e-19, Method: Composition-based stats. Identities = 47/255 (18%), Positives = 78/255 (30%), Gaps = 34/255 (13%) Query: 103 IRKSGDFDYRKITTKHIRSGVESRKHT----------PSSAIQFLTSMRVLFKWAVRQEY 152 + G D +T H+ PSS + L ++R L ++A R Sbjct: 43 LAAVGVDDLTAVTEAHVEDFRARLATGDPDEGRPPLAPSSVARTLAAVRGLHRFATRDGV 102 Query: 153 VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW--------SEGSQPRLAFEFLLYSGL 204 + +V P+ + + M + R E L +G Sbjct: 103 TDTDVAAAVAPPRPPRRLPKALPLDRMIAVIEAAGDTGVDTDPARLRDRAMLELLYATGA 162 Query: 205 RCSDSCRAGVQHLQ-----NNIFSIKTQKTGTIITVELPDGFMKLL---------AMTPI 250 R ++ V L + I K G V + + + A+ Sbjct: 163 RAAELIGLDVDDLDGLDHPDGGTVILRGKGGKERLVPVGRPACEAVGAYLTRARPALAKR 222 Query: 251 GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELM 308 G F+N +++ A A +AGV + S H R AT D GA + Sbjct: 223 GGPALFLNTRGGRISRQTLWNVVSAAAARAGVTQEVSPHSFRHSFATHLLDGGADIRVVQ 282 Query: 309 ATYGWKTVDQAETYT 323 G +V + YT Sbjct: 283 ELLGHASVTTTQVYT 297 >gi|49476240|ref|YP_034281.1| site-specific tyrosine recombinase XerC [Bartonella henselae str. Houston-1] gi|49239048|emb|CAF28348.1| Integrase /recombinase xerC [Bartonella henselae str. Houston-1] Length = 326 Score = 100 bits (250), Expect = 3e-19, Method: Composition-based stats. Identities = 38/263 (14%), Positives = 71/263 (26%), Gaps = 27/263 (10%) Query: 88 AVNSRISFESYFDQIIRKSGDFD-------YRKITTKHIRSGVESRKHTPSSAIQFLTSM 140 A + + + G R I + + + S + + + Sbjct: 44 AQAYERDTRQFLFFLCQHLGHTPTFKDLANLRVIDLRAYLAYRRKHDISARSLSRGMAGI 103 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT--------KEDMQQFKSFWSEGSQP 192 R F + R+ +I V PK +P K++ QQ W ++ Sbjct: 104 RSFFNYLSREGIASIPAAKLVRTPKHPKSLPKPLNIKSALHLVKQENQQENEPWII-ARN 162 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQKTGTIITVELP----DGFMKLLA 246 L G+R S++ + + T K G V L + L Sbjct: 163 TAVLMLLYGCGMRISEALSLTPEQFSDPQKTSLFVTGKGGKTRLVPLIKVVYEAIQNYLK 222 Query: 247 MTP---IGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAG 301 P + + F + + G+ + H +R AT G Sbjct: 223 CCPYPLLDNQPMFRGARGGPLQPAIIQKTVRNLRAYLGLPETATPHTLRHSFATHLLSRG 282 Query: 302 ATAHELMATYGWKTVDQAETYTK 324 + G + + YT Sbjct: 283 GDLRTIQELLGHACLSTTQVYTH 305 >gi|251773314|gb|EES53863.1| putative phage integrase [Leptospirillum ferrodiazotrophum] Length = 275 Score = 100 bits (250), Expect = 3e-19, Method: Composition-based stats. Identities = 47/239 (19%), Positives = 86/239 (35%), Gaps = 13/239 (5%) Query: 96 ESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH--TPSSAIQFLTSMRVLFKWAVRQEYV 153 S I + D ++T K +R E +K + S+A + L ++ L + +V ++ Sbjct: 27 RSMLFWINTRWKDRLLEEVTAKSVRKLAEEKKAETSASTANRTLALIKALLRASVEWGWL 86 Query: 154 AINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAG 213 P ++ +R T+E+ ++ E +P + F +GLR S+ Sbjct: 87 DRVP--PIKLYPLDNRRVRWLTREEARKLIGHLPEDLKPMVLFSLA--TGLRRSNVFALE 142 Query: 214 VQHLQNN----IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF-FINNDKQKMNATQ 268 + + K+G I V L + +L E F F + + + N Sbjct: 143 WSQVDLARNVAWIHGEQSKSGKPIGVPLNETAGAVLKKQKGQSEVFVFPDKNGKARNRLA 202 Query: 269 FSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 W + AG+ N H +R A+ +G L GW + Y A Sbjct: 203 DRAW-RKALRAAGIENFRWHDLRHTWASWHVQSGTPIPVLQELGGWHSYAMVLRYAHLA 260 >gi|15639386|ref|NP_218835.1| integrase/recombinase (xprB) [Treponema pallidum subsp. pallidum str. Nichols] gi|189025628|ref|YP_001933400.1| integrase/recombinase [Treponema pallidum subsp. pallidum SS14] gi|3322673|gb|AAC65379.1| integrase/recombinase (xprB) [Treponema pallidum subsp. pallidum str. Nichols] gi|189018203|gb|ACD70821.1| integrase/recombinase [Treponema pallidum subsp. pallidum SS14] gi|291059785|gb|ADD72520.1| tyrosine recombinase XerC [Treponema pallidum subsp. pallidum str. Chicago] Length = 297 Score = 100 bits (250), Expect = 3e-19, Method: Composition-based stats. Identities = 41/264 (15%), Positives = 82/264 (31%), Gaps = 24/264 (9%) Query: 85 GSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSG---VESRKHTPSSAIQFLTS 139 L+ ++ ++ + R + ++T +R + R + +S + L+ Sbjct: 17 RRLSAHTVSAYARDLNLFERWLQHAQRACARVTVSDMRLFVCELGRRGLSAASINRVLSV 76 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS-----QPRL 194 +R + +A ++ + A NP V K ++ R + F + S + Sbjct: 77 VRGFYVFAKKKHWCADNPARLVRNIKGPSKLPRFMFPPQAKAFYTLPSRTDILWQERDAA 136 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTIITVELPDGFMKLL-------- 245 F L +G R S+ ++ + ++ S I K TV + L Sbjct: 137 LFAMLYSTGCRVSEIAALSLKDVHPHLSSAIVRGKGDRERTVFIAPFAQNFLHVYMQARA 196 Query: 246 ---AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADA 300 A F+N + ++ A S H R A+ Sbjct: 197 QRCARYASCTPALFVNQRGRSLSVRGIQYLVSRYVLLAQDVHALSPHAFRHSFASTLIRR 256 Query: 301 GATAHELMATYGWKTVDQAETYTK 324 GA G +V + Y Sbjct: 257 GADVRVAQELLGHASVSTTQRYVH 280 >gi|292491077|ref|YP_003526516.1| integrase family protein [Nitrosococcus halophilus Nc4] gi|291579672|gb|ADE14129.1| integrase family protein [Nitrosococcus halophilus Nc4] Length = 320 Score = 100 bits (250), Expect = 3e-19, Method: Composition-based stats. Identities = 44/242 (18%), Positives = 81/242 (33%), Gaps = 17/242 (7%) Query: 45 PAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR 104 Y A+ + IN+ + TL ++ Y+K A ++ + Sbjct: 36 RDYHQAMV----RYAEINTQPRPMMTLGQVMDRYQKEVI-PKKAPRTQKDNLKQLVPLRA 90 Query: 105 KSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP 164 G +T I + ++ R P SA + + +F +A+R NPC V+R Sbjct: 91 VFGHMPPNDLTPPEIYAYMDRRP--PVSANREKALLSHIFSYAIRWGAAKDNPCRHVKRN 148 Query: 165 KRKTEGIRPWTKEDMQQFKSFWSE-GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS 223 G D +Q++ + + A + L +GLR D + + Sbjct: 149 TETPSGRYV----DPEQYRLVYDVMPEVVQCAMDIALLTGLRQGDVLKLKRTDCKEEGLL 204 Query: 224 IKTQKTGTIITVELPDGFMKLLAM---TPIGKETFFI--NNDKQKMNATQFSIWFKAKAT 278 + T KTG + + + + P T +I Q F ++ Sbjct: 205 VGTSKTGRTLMFSWTEDLREAINRAQNLPSTIATLWILHTKHGQPYTGDGFRTLWQKAMR 264 Query: 279 KA 280 KA Sbjct: 265 KA 266 >gi|120553910|ref|YP_958261.1| phage integrase family protein [Marinobacter aquaeolei VT8] gi|120323759|gb|ABM18074.1| phage integrase family protein [Marinobacter aquaeolei VT8] Length = 283 Score = 100 bits (250), Expect = 3e-19, Method: Composition-based stats. Identities = 45/264 (17%), Positives = 87/264 (32%), Gaps = 19/264 (7%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE----SRKHT 129 L ++ + ++ S+ + R ++ +++ R Sbjct: 4 LRQAMIQTMRQHGFSPQTQKSYLYVVADLARYY-RRSPDQLEVGDLQTYFNYLVQERSLA 62 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 P+S +L +R L+ + +N L PKR T++D+ + Sbjct: 63 PASCRLYLHGIRFLYLQVLHWADFDVNLVL----PKRPQRIPELLTRQDVARIVGATKNP 118 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTIITVELPDGFMKLLAM 247 R GLR S++ V+++ I K G V L D + +L Sbjct: 119 KH-RALLLITYGCGLRVSEAVSLQVKNIDGERHLLHIHQGKGGKDRMVPLTDVLLDVLRA 177 Query: 248 -TPIGKETFFINND----KQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADA 300 +G+ ++ Q + AT ++ +GV + H +R AT + Sbjct: 178 YWCLGRPVLWLFPSEVLVGQHLTATTAQKVYRHAKRLSGVQRRGGIHALRHAYATHQLEH 237 Query: 301 GATAHELMATYGWKTVDQAETYTK 324 G +EL G + E Y Sbjct: 238 GVPLNELQKYLGHSDLRTTERYLH 261 >gi|307691931|ref|ZP_07634168.1| Phage integrase [Ruminococcaceae bacterium D16] Length = 390 Score = 100 bits (250), Expect = 3e-19, Method: Composition-based stats. Identities = 56/293 (19%), Positives = 94/293 (32%), Gaps = 38/293 (12%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRK- 127 TL + + + +L N+ S+E Y + G ++T I+ K Sbjct: 60 TLGEWLDRWMEEYGAVTLRPNTLRSYEQYIRCYVKPYLGGKIVSRVTRLDIQKLYRKLKK 119 Query: 128 -----HTPS-----SAIQFLTSMRVLFKWAVRQE---YVAINPCLSVERPKRKTEGIRPW 174 P S L +L + E V NP V+ PK + + Sbjct: 120 EGRVHDHPEYGHELSDSMVLRIHAMLHRCLKDAERDHIVPYNPTDGVKLPKSNYKPKQVL 179 Query: 175 TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK------TQK 228 +E M F + + R F L +GLR + C + N ++K K Sbjct: 180 DREQMDAFLAAVDKNEIWRDFFYTELTTGLRRGEICGLMWRDFDENAGTLKILRSVNVPK 239 Query: 229 TGT-----------IITVELPDGFMKLLAMTPIGKETFFIN----NDKQKMNATQFSIWF 273 G T+ LP ++ L + +I ++ + + W Sbjct: 240 RGELEIGETKTERGRRTIRLPPSTVQRLKERKKHAISQWIFPEPLAPEKPVRPSAAYYWM 299 Query: 274 KAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTK 324 K +AG+ H +R AT + +G A L G +TYT Sbjct: 300 KVLLKEAGLPHIRFHDLRHTFATHALASGVDAKTLSGILGHTNASFTLDTYTH 352 >gi|228966946|ref|ZP_04127984.1| Prophage LambdaBa02, site-specific recombinase, phage integrase [Bacillus thuringiensis serovar sotto str. T04001] gi|228792680|gb|EEM40244.1| Prophage LambdaBa02, site-specific recombinase, phage integrase [Bacillus thuringiensis serovar sotto str. T04001] Length = 376 Score = 100 bits (250), Expect = 3e-19, Method: Composition-based stats. Identities = 43/293 (14%), Positives = 96/293 (32%), Gaps = 28/293 (9%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHT 129 L+ + + S ++ ++ +++ + G+ I + + + Sbjct: 63 FSQLVEIWMQEKE-SSCRPSTLYQYKRILRSRVMPEFGEKRLSDIKPLTVHNFHQKLLKE 121 Query: 130 PSSAIQFLTS---MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + + ++ + V E + NP +RPK K + WT E+ +F + Sbjct: 122 GLTTKYISSVDVMLKQILDKGVELEMINSNPAKKAKRPKVKKKAQASWTVEEAMKFMEYA 181 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT------------ 234 +AF L++G+R + + +I Q+T T++ Sbjct: 182 KIQGSYYIAFVLALHTGMRIGEVLALQWDDINFENKTIHVQRTLTLVDGKYELGETKTEA 241 Query: 235 ----VELPDGFMKLLAMTPIGK-----ETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284 + + + M L + + +K+ ++ KA V Sbjct: 242 SNRMIPMTEDLMGALLEYQNHRKENSFDLLICTRNKKIVHPYTIRYQMKALCEAIDVPYI 301 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNS 336 H +R+ TI D+GA A + G V YT + ++ + Sbjct: 302 RFHDIRRTFTTILIDSGANAKVVSKLLGHTNVSTTLNIYTDVYEERQIEVTEM 354 >gi|297561148|ref|YP_003680122.1| integrase family protein [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296845596|gb|ADH67616.1| integrase family protein [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 329 Score = 100 bits (250), Expect = 3e-19, Method: Composition-based stats. Identities = 47/317 (14%), Positives = 106/317 (33%), Gaps = 39/317 (12%) Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS--------GDFDYRKITTK 117 + + + +Y + + ++ ++ ++ +++ + Sbjct: 3 AQTGPVAEAVEQYLVARRAAKPSPHTVAAYRRDLRGVLGCVAQVMGVEPEQVEWQDLEAG 62 Query: 118 HIRSGVESRK--HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175 +R+ SS ++ ++ F + V + VA NP +V RP+ + G +P Sbjct: 63 VLRAAFAEFAGERAASSVVRAWSTWNGFFGFWVSEGVVAGNPMSAVPRPRVRPSGPKPLM 122 Query: 176 KED-----MQQF-----KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK 225 ED ++ K+ + L +G+R ++ V+ + + Sbjct: 123 GEDTPERLLEALARGARKARDPWPERDLAVLALALLTGMRSAEMLSLRVESVGGRSGERR 182 Query: 226 ---TQKTGTIITVELPDGFMKLLAM----------TPIGKETFFINNDKQKMNATQFSIW 272 K G + + LL G + ++N + + Sbjct: 183 IRVVGKGGGERVLPIEVPLEALLEAYLVSRRERFGVVRGSDPLLVDNRGEGLRRGGLQYL 242 Query: 273 FKAKATKAGVNKSA------HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 + AGV+ H +R AT A+ GA+ E+M G +V ++ Y + Sbjct: 243 VQQCYKHAGVHDRVARGTLVHALRHTFATRLAEDGASVSEIMHLLGHASVASSQAYIEVT 302 Query: 327 DRIRLGIKNSRRISSVV 343 R + +S R V+ Sbjct: 303 ARAQREAASSNRTYGVL 319 >gi|115377467|ref|ZP_01464669.1| phage integrase family protein [Stigmatella aurantiaca DW4/3-1] gi|310823313|ref|YP_003955671.1| phage integrase family protein [Stigmatella aurantiaca DW4/3-1] gi|115365511|gb|EAU64544.1| phage integrase family protein [Stigmatella aurantiaca DW4/3-1] gi|309396385|gb|ADO73844.1| Phage integrase family protein [Stigmatella aurantiaca DW4/3-1] Length = 381 Score = 100 bits (250), Expect = 3e-19, Method: Composition-based stats. Identities = 54/345 (15%), Positives = 110/345 (31%), Gaps = 30/345 (8%) Query: 4 SLRLPPFVTKERTRHGKII-YYFRKGHGR--RIRLPYP-----HESTFIPAYMSALTGST 55 S+++ P++ +R + G + F+ G R R+ P + S L Sbjct: 2 SVKVRPYI--KRGKSGWEVDIMFKWPDGELYRERVKAPVSSKSGAKAWGEQRQSELLARG 59 Query: 56 PKREYINSPRKKPTTLKWLISEY-RKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRK 113 + + + P L+ + + A ++ IS ES ++ + G Sbjct: 60 KQAKEEVKRKAVPM-LEEFVPRFIEGYARANRQKPSTIISKESVLRIYLVPRFGQRRLDT 118 Query: 114 ITTKHIRSGVESRKH-TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172 +T + I+ K + + LT L K AV + P ++ K + Sbjct: 119 LTHEDIQRLKADLKDLSTKTVNNVLTVFNKLLKVAVEWGVLDKLPVT-IKLLKAPKPTMS 177 Query: 173 PWTKEDMQQF-KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQ-- 227 + E+ ++ ++ + + +GLR + + I+ Sbjct: 178 FYDFEEYERLVEAASKLDWRIQAMVLLGGDAGLRSGEILALEWTDVDFRRGQLHIRQSEW 237 Query: 228 -------KTGTIITVELPDGFMKLLAM-TPIGKETFFINNDKQKMNATQFSIWFKAKATK 279 K G V + LLA + ++ Q S W + Sbjct: 238 QGHVTVPKGGRDRRVPMTKRLAALLATNRHLKGPRVLYRDNGQPATRAAVSRWMAKAQKR 297 Query: 280 AGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 AG+ + H +R + A GA A + G + + + Y Sbjct: 298 AGLPVTRALHVLRHTFCSPLAMRGAPAKAIQELAGHENLSTTQRY 342 >gi|330880190|gb|EGH14339.1| Phage integrase [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 271 Score = 100 bits (250), Expect = 3e-19, Method: Composition-based stats. Identities = 49/247 (19%), Positives = 91/247 (36%), Gaps = 28/247 (11%) Query: 110 DYRKITTKHI---RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQE-YVAINPCLSVERPK 165 ++R +T H+ R+ +E R ++ + L ++ LF + NP V+RP+ Sbjct: 14 EFRVVTRSHVLAWRAHLEHRGLAGATIRRKLAALASLFDHLLENNAIAGGNPVHGVKRPR 73 Query: 166 RKT-EGIRPWTKED-----MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL-- 217 ++ EG P + ++ +G + R LLY GLR ++ V + Sbjct: 74 IESNEGKTPALGDHQAKALLEAPDETTLKGQRDRALLAVLLYHGLRREEAALLQVSDIQE 133 Query: 218 QNNIFSIKT-QKTGTIITVELPDG--------FMKLLAMTPIGKETFFINNDKQ----KM 264 + I +K K G + + L K F+ + + Sbjct: 134 RRGIQHLKVHGKGGKVRYLPLHPIAAGRIHQYLENSEHHLAERKVPLFMPLRGKLTGAGI 193 Query: 265 NATQFSIWFKAKATKAGV---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321 A A A KAG+ HG+R +AT + + A ++ A G + + Sbjct: 194 TANGIYAVVTAYAKKAGIEVDGLGVHGLRATAATNALEHEADIAKVQAWLGHANISTTKI 253 Query: 322 YTKGADR 328 Y + +R Sbjct: 254 YDRRENR 260 >gi|147677726|ref|YP_001211941.1| site-specific recombinase XerD [Pelotomaculum thermopropionicum SI] gi|146273823|dbj|BAF59572.1| site-specific recombinase XerD [Pelotomaculum thermopropionicum SI] Length = 317 Score = 100 bits (250), Expect = 3e-19, Method: Composition-based stats. Identities = 39/282 (13%), Positives = 96/282 (34%), Gaps = 20/282 (7%) Query: 65 RKKPTTLKW--LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIR 120 R K ++KW + E+ A + +++ + + DY + Sbjct: 6 RLKKLSVKWEQALEEFLLHKKAEGRAARTLFDYKARITPFFQAYPEAWPDYEALRRAVRL 65 Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 + P+S L +R F W + + + NP + + K + + ++ ++ Sbjct: 66 YLAQFTGKAPASYNLPLQYLRSFFSWCMAENMLHANPTEGIAKRKDEGKAREI-PEDTLK 124 Query: 181 QFKSFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI---------KTQ 227 + G + + +G+R ++ + +TQ Sbjct: 125 NLLALPDRRTYAGIRDYALILLQVDTGIRPGEALNLKPSDFNIPQLEVVIPRETAKTRTQ 184 Query: 228 KTG--TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS 285 +T + +T + + + F + D ++M T ++ +A + G + Sbjct: 185 RTAVYSPVTAKAIKRLLDVRPPDWNDSVPVFASQDGKRMLETSWANRLRAYGKRIGADLQ 244 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 + +R SA ++ GATA + G + + Y + + Sbjct: 245 PYMLRHTSAIMALRNGATAFFVQKQLGHSDMQMTKRYCRLVE 286 >gi|323487277|ref|ZP_08092579.1| hypothetical protein HMPREF9474_04330 [Clostridium symbiosum WAL-14163] gi|323399418|gb|EGA91814.1| hypothetical protein HMPREF9474_04330 [Clostridium symbiosum WAL-14163] Length = 410 Score = 100 bits (250), Expect = 3e-19, Method: Composition-based stats. Identities = 52/321 (16%), Positives = 105/321 (32%), Gaps = 53/321 (16%) Query: 76 SEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESRKHT--PSS 132 ++ S A ++ + Y+ I GD KI+ HI+ V++ K + Sbjct: 89 KQWLSSCKPPVFANSTYEGYSYYYTHYIADVFGDRPVNKISPLHIQKYVDAMKEKYSAET 148 Query: 133 AIQFLTSMRVLFKWAVR-QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191 + + + +F +A+ + +A+NP ++R K + W+ +D+Q F + S Sbjct: 149 VNKCINVLIDIFNYAITPLKEIAVNPASGIKRLKVSRPQMTVWSDDDVQYFLNLPEVKSS 208 Query: 192 P-RLAFEFLLYSGLRCSDSCRA-------GVQHLQ-----NNIFSIKTQKT-GTIITVEL 237 F L G R S+ C + L + ++ KT G+ + + Sbjct: 209 EYYAMFCVSLLIGSRPSEVCGLSELSLLDNPKRLDFWRGYDQHGAVSDMKTDGSHRVIRI 268 Query: 238 PDGF-------------MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK----- 279 PD +L E F+ + +S FK + Sbjct: 269 PDILYKSIHRRLLWKKEQQLKNPEFGNNEFLFVTKFGNPIRPNLYSKAFKRIVMQHNEQI 328 Query: 280 AGVNK-----------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 + ++K + +G R AT + + + G Y Sbjct: 329 SKLDKIPEGRRLLPVITLYGCRHSFATNALAGNNDPALISSIMGNSVKTLLTRYAHPNQE 388 Query: 329 IRL------GIKNSRRISSVV 343 +L K +++S + Sbjct: 389 RQLSLINDFADKALKKVSQNI 409 >gi|296328607|ref|ZP_06871124.1| integrase/recombinase [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|296154206|gb|EFG95007.1| integrase/recombinase [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 338 Score = 100 bits (250), Expect = 3e-19, Method: Composition-based stats. Identities = 42/295 (14%), Positives = 96/295 (32%), Gaps = 44/295 (14%) Query: 88 AVNSRISFESYFDQIIR--KSGDFDY---------RKITTKHIRSGV----ESRKHTPSS 132 + + + + + G+ D+ + I + + + + E RK +S Sbjct: 43 SEKTVKDYMFHLKDFLHFVYDGENDFSISEVIPLMQDIEKEDVEAYIVHLFEDRKLKKTS 102 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW--TKEDMQQFKSFWSEGS 190 L++++ L+K NP ++ K + +D+++ + S Sbjct: 103 VNTILSALKSLYKELESNGL--KNPVKYIKLFKVNRNIENVLKVSIDDIRKIIGLYKIDS 160 Query: 191 QPR----LAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVELPDGFM 242 + + L Y+G+R + +H F + K+G + + + Sbjct: 161 EKKYRNITILYTLFYTGMRSKELLTLQFKHYLKREDEYFFKLIQTKSGKDVYKPIHKSLV 220 Query: 243 K-------------LLAMTPIGKETFFINN--DKQKMNATQFSIWFKAKATKAGVNKSAH 287 K L + + ++ F + D ++ + + G + S H Sbjct: 221 KKLEEYKKYLISMYSLDLKDLDEKYIFSTSVLDNTPLSYRSLNAIIQDMGKLIGKDISPH 280 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342 +R AT + +GA E+ G E Y R L K ++ + Sbjct: 281 NIRHAIATELSLSGADILEIRDFLGHSDTKVTEVYINA--RSILEKKVLEKLPEI 333 >gi|294785567|ref|ZP_06750855.1| integrase/recombinase [Fusobacterium sp. 3_1_27] gi|294487281|gb|EFG34643.1| integrase/recombinase [Fusobacterium sp. 3_1_27] Length = 328 Score = 100 bits (250), Expect = 3e-19, Method: Composition-based stats. Identities = 42/295 (14%), Positives = 96/295 (32%), Gaps = 44/295 (14%) Query: 88 AVNSRISFESYFDQIIR--KSGDFDY---------RKITTKHIRSGV----ESRKHTPSS 132 + + + + + G+ D+ + I + + + + E RK +S Sbjct: 33 SEKTVKDYMFHLKDFLHFVYDGENDFSISEVIPLMQDIEKEDVEAYIVHLFEDRKLKKTS 92 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW--TKEDMQQFKSFWSEGS 190 L++++ L+K NP ++ K + +D+++ + S Sbjct: 93 VNTILSALKSLYKELESNGL--KNPVKYIKLFKVNRNIENVLKVSIDDIRKIIGLYKIDS 150 Query: 191 QPR----LAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVELPDGFM 242 + + L Y+G+R + +H F + K+G + + + Sbjct: 151 EKKYRNITILYTLFYTGMRSKELLTLQFKHYLKREDEYFFKLIQTKSGKDVYKPIHKSLV 210 Query: 243 K-------------LLAMTPIGKETFFINN--DKQKMNATQFSIWFKAKATKAGVNKSAH 287 K L + + ++ F + D ++ + + G + S H Sbjct: 211 KKLEEYKKYLISMYSLDLKDLDEKYIFSTSVLDNTPLSYRSLNAIIQDMGKLIGKDISPH 270 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342 +R AT + +GA E+ G E Y R L K ++ + Sbjct: 271 NIRHAIATELSLSGADILEIRDFLGHSDTKVTEVYINA--RSILEKKVLEKLPEI 323 >gi|58697179|ref|ZP_00372594.1| site-specific recombinase, phage integrase family [Wolbachia endosymbiont of Drosophila simulans] gi|58536507|gb|EAL59887.1| site-specific recombinase, phage integrase family [Wolbachia endosymbiont of Drosophila simulans] Length = 278 Score = 100 bits (250), Expect = 3e-19, Method: Composition-based stats. Identities = 33/233 (14%), Positives = 73/233 (31%), Gaps = 19/233 (8%) Query: 109 FDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCL-SVERPKRK 167 + + + +R S + L+ +R FK+ ++ + N + S+ RP ++ Sbjct: 25 KNLSIPELRSWLTSRYARGVNARSNTRALSVIRNFFKY-IKNNHNIDNEAVFSLSRPIQR 83 Query: 168 TEGIRPWTKEDMQQFKSFWSEGS--------QPRLAFEFLLYSGLRCSDSCRAGVQHLQN 219 + + +++ + L +GLR S++ V + N Sbjct: 84 RTLPKALSIPNIKTLLKEMKLSDLGEPWVVKREIAIIVLLYGTGLRISEALNLRVSDINN 143 Query: 220 NIFSIKTQKTGTIITVELPDGF----MKLLAMTP--IGKETFFINNDKQKMNATQFSIWF 273 I T K V + + + P + F+ +K+ T + Sbjct: 144 ESL-IVTGKGDKQRQVFILPVVKKCIQEYIKACPYLDEAQHLFVGVRGKKLGRTYVANRL 202 Query: 274 KAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 + + S H R AT + G +++ + YT Sbjct: 203 QKIRRMLNLPEILSPHAFRHSFATHLLQEDIDIRSIQQLLGHSSLETTQIYTH 255 >gi|163869346|ref|YP_001610602.1| integrase/recombinase XerD [Bartonella tribocorum CIP 105476] gi|161019049|emb|CAK02607.1| integrase/recombinase XerD [Bartonella tribocorum CIP 105476] Length = 312 Score = 100 bits (250), Expect = 3e-19, Method: Composition-based stats. Identities = 42/284 (14%), Positives = 100/284 (35%), Gaps = 33/284 (11%) Query: 74 LISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH-----IRSGVESRK 127 +I + + + + ++ +++ + + + + S + + Sbjct: 6 VIERFLEMMSAERGASAHTLAAYQHDLQWAQDELSSHSVSLFSAQKEDLIGLLSLMHTFG 65 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 +S + L+++R +++ + A +P ++ P++ + +++ + +F Sbjct: 66 FAATSQARRLSTLRQFYQFLYAEGLRADDPSHDIDAPRQGRPLPKIISEDVVIKFLDLAQ 125 Query: 188 E-------GSQPRLAF-------EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII 233 GS+ L E L +GLR S+ VQ ++ +S+ + G Sbjct: 126 LEVNQADYGSKDYLRALRLQLLSEMLYATGLRISELVSLPVQAVRGKEYSLLVRGKGKKE 185 Query: 234 TVELPDG-----FMKLLAMTPIGKET----FFINNDKQKMNATQFSIW-FKAKATKAGVN 283 + L ++ L + GK+ F + + A Q K A +AG+ Sbjct: 186 RMVLLSKKAYQVLLQWLDLRDQGKDAKSLYLFPAHSETGYIARQVVARELKNLAKRAGIT 245 Query: 284 K---SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 S H +R A+ GA + G + + YT Sbjct: 246 SESFSPHVLRHAFASHLLQNGADLRAVQHLLGHSDISTTQIYTH 289 >gi|323128281|gb|ADX25578.1| DNA integration/recombination/inversion protein [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 374 Score = 100 bits (250), Expect = 3e-19, Method: Composition-based stats. Identities = 61/321 (19%), Positives = 106/321 (33%), Gaps = 52/321 (16%) Query: 50 ALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGD 108 A+ G T K + + K+ T L W Y+ + + NSR S E I+ GD Sbjct: 42 AMNGYTVKEKPTVTTYKELTALWW--ESYKNT-----IKPNSRQSMEGIVRLHILPAFGD 94 Query: 109 FDYRKITTKHIRSGVESRKHTPSS------AIQ-FLTSM-RVLFKWAVRQEYVAINPCLS 160 ++TT I+ V + + A FL ++ R + ++ V + + NP Sbjct: 95 CKLSRLTTPVIQQQVNKWANNANKGIKGAYANYSFLNNINRRILQYGVTMQVIEHNPARD 154 Query: 161 VERPKRKTEGIRP---WTKEDMQQFKSFWS-------EGSQPRLAFEFLLYSGLRCSDSC 210 V P+++ ++ ++++QF ++ E + ++ LL +G R + Sbjct: 155 VIIPRKQNNKEHKVKFFSNQELKQFLNYLDDLDLSSYENFFDYVLYKTLLATGCRIGEVL 214 Query: 211 RAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ-------- 262 + +IK KT L I + T + + Sbjct: 215 ALEWSDIDLEKGTIKVSKTLNRYQETNTPKSKAGLRDIEIDRATVLLLKQYKNRQQVLSW 274 Query: 263 -----------KMNATQ-----FSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAH 305 + AGV + S HG R ATI AG A Sbjct: 275 DLGRSETIVFTPFTTKYAYACLLRKRLQKHFKAAGVPDISFHGFRHTHATIMLYAGIEAK 334 Query: 306 ELMATYGWKTVDQA-ETYTKG 325 +L G + TY Sbjct: 335 DLQYRLGHSNISMTLNTYVHA 355 >gi|251780460|ref|ZP_04823380.1| site-specific recombinase, phage integrase family [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243084775|gb|EES50665.1| site-specific recombinase, phage integrase family [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 385 Score = 100 bits (250), Expect = 3e-19, Method: Composition-based stats. Identities = 57/353 (16%), Positives = 115/353 (32%), Gaps = 53/353 (15%) Query: 28 GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWG-S 86 G RR+ A+ A K SP K I ++ Sbjct: 24 GKRRRVIKQGFRTKKLAEAF--ATQILDKKNHGFVSPTDSDLLFKNFIMKWYDMHTTSLK 81 Query: 87 LAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSG----VESRKHTPSSAIQFLTSMR 141 L+VN+R + S + +I G++ + I+ +++ + + P++ ++L + Sbjct: 82 LSVNTRNDYLSRINTNLIPLLGNYKIKDISIDVVQNFYNTLINEKHLKPTTVKKYLDILS 141 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY 201 K+A ++ + P +++ K + I W +E++ F ++ + + Sbjct: 142 SCLKYAQSKDLIYKLPTSYIKKVKIQKPKIEYWNQEEVNFFLNYIK-NTYLYTPIFIDIL 200 Query: 202 SGLRCSDSCRAGVQHLQ--NNIFSIKTQ---------------KTGTIIT-VELPDGFMK 243 +GLR + C + N I ++ Q KT + + +P + Sbjct: 201 TGLRIGELCGLRWCDVDLQNGIITVNHQLIHDKRLKVLLLADLKTSSSHRSITIPKILID 260 Query: 244 LLA-----MTPIGKETFFINNDKQKMNATQFSIWF--KAKATKAGVN------------- 283 L E ++ K S+ F K K ++ Sbjct: 261 YLKELKANRQATNTEYVVLDRQDFKYIPRSLSMNFTKKVAKYKKSIDDFKKANEEVPHGY 320 Query: 284 -----KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIR 330 S HG+R AT+ G + G + TYT D ++ Sbjct: 321 MQLKQISFHGLRHTHATLLIANGENVKVVSERLGHTDIRMTLNTYTHVLDSMK 373 >gi|288574964|ref|ZP_06393321.1| integrase family protein [Dethiosulfovibrio peptidovorans DSM 11002] gi|288570705|gb|EFC92262.1| integrase family protein [Dethiosulfovibrio peptidovorans DSM 11002] Length = 297 Score = 100 bits (250), Expect = 3e-19, Method: Composition-based stats. Identities = 46/289 (15%), Positives = 97/289 (33%), Gaps = 30/289 (10%) Query: 69 TTLKWLISEY--RKSAHWGSLAVNSRISFESYF---DQIIRKSGDFDYRKITT--KHIRS 121 T+ ++ ++ S G + N+ ++ + +SG + Sbjct: 2 TSFSSILGQFLSYLSLELGE-SQNTCKAYRVDISQWNDFCSRSGRDPVASDSDLYGKYVH 60 Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAIN-PCLSVERPKRKTEGIRPWTKEDMQ 180 + S P++ + ++R + V + YV+ + P P R + T+ ++ Sbjct: 61 YMRSIDLAPATIQRKCAAVRTWINFLVVEGYVSDDVPM--PPLPDRPKRLPQLLTEGEVS 118 Query: 181 QFKSFWS------EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS-IKTQKTGTII 233 + + R E L GLR S+ C ++ LQ S I K Sbjct: 119 RLLGACDGDPMGYLDFRDRAILETLYGCGLRASELCSLKLRDLQFERASMIIFGKGNKER 178 Query: 234 TVELPDGFMKLLAM---------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284 V L + + G + F++ + + M + + ++AG+++ Sbjct: 179 MVPLVGSARRWIERFIDEARPSVAKEGVDQVFLSRNGRPMRRESLWKMIRKRGSRAGISQ 238 Query: 285 S---AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 S H +R A+ G L G +++ E Y +R Sbjct: 239 SRLHPHVIRHTVASHLLRRGMDLRTLQEFLGHESIGTTEKYLHFDQELR 287 >gi|254450128|ref|ZP_05063565.1| phage integrase [Octadecabacter antarcticus 238] gi|198264534|gb|EDY88804.1| phage integrase [Octadecabacter antarcticus 238] Length = 315 Score = 100 bits (250), Expect = 3e-19, Method: Composition-based stats. Identities = 43/266 (16%), Positives = 82/266 (30%), Gaps = 17/266 (6%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132 L + ++ ++ G T +R+ T + Sbjct: 28 ALRQRMIEDMRIRAIGETTQKGHIRAIKHFATFLGRSPDTA-TPDELRAYQLHMTDTEVT 86 Query: 133 A---IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM-QQFKSFWSE 188 + S+R+ F +E + ++ ++ + E++ + Sbjct: 87 TSTFNTRIVSLRLFFGVTCGREEMKR----YMQFRRKPRRLPVVLSVEEIGDLLAAVPGP 142 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTIITVELPDGFMKLLA 246 G R A +GLR S+ C V + + + K G L G + LL Sbjct: 143 GLTYRAALGISYGAGLRASEVCHLKVVDIDSGRMLIHVDEGKNGKDRKAMLSPGLLDLLR 202 Query: 247 ---MTPIGKETFFINNDK-QKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300 + + F K ++ Q + F + AG+NK + H +R AT +A Sbjct: 203 EYWLEARPEGWLFPGKPKINPLSPRQLNRAFTSAKHMAGINKPATLHTLRHSFATHLLEA 262 Query: 301 GATAHELMATYGWKTVDQAETYTKGA 326 G + G + YT A Sbjct: 263 GTDVRVIQVLLGHSKLSTTARYTHVA 288 >gi|162447445|ref|YP_001620577.1| tyrosine recombinase/integrase [Acholeplasma laidlawii PG-8A] gi|161985552|gb|ABX81201.1| tyrosine recombinase/integrase, xerDC family [Acholeplasma laidlawii PG-8A] Length = 310 Score = 100 bits (250), Expect = 3e-19, Method: Composition-based stats. Identities = 48/282 (17%), Positives = 93/282 (32%), Gaps = 32/282 (11%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR---KSGDFDYRKITTKHIRSGVESRK 127 + L +Y A +++ ++ S+E Q + D R R + RK Sbjct: 7 FRQLTKKYLDDA---DVSLTTKQSYERILQQFVEYANTLSDLPTRS-DIMAYRDHLFKRK 62 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP-WTKEDMQQFKSFW 186 ++ L +R ++W + NP ++ PK + + R ++ + +Q Sbjct: 63 LEETTIKYHLVVVRNFYRWYHTNGH-GANPSEGIKSPKIEKKFKRAHLSESESRQLLKLA 121 Query: 187 SEGS-------QPRLAFEFLLYSGLRCSDSCRAGVQH---LQNNIFSIK--TQKTGTIIT 234 S + + +L +G+R + RA V + + KT Sbjct: 122 QINSDKNIIKYRDYVMVLLMLTTGMRTVEVERADVSDLNVIDDGEILYVHGKGKTSKSSF 181 Query: 235 VELPDGFMKLLAMTPIGK----ETFFINND----KQKMNATQFSIWFKAKATKAGVN--- 283 V L K + + + E FI++ Q+M K G + Sbjct: 182 VRLSPLVNKAIETYIMKRSDQYEPLFIDHKPKYLGQRMKTRNIRRIIKDLLRDIGFDDDK 241 Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 +AH +R +AT++ GA + E Y Sbjct: 242 HTAHSLRHTTATLARQYGANKDDTQKIMRHSDPATTEIYMHA 283 >gi|282879915|ref|ZP_06288640.1| phage integrase domain protein [Prevotella timonensis CRIS 5C-B1] gi|281306217|gb|EFA98252.1| phage integrase domain protein [Prevotella timonensis CRIS 5C-B1] Length = 292 Score = 100 bits (250), Expect = 3e-19, Method: Composition-based stats. Identities = 42/267 (15%), Positives = 95/267 (35%), Gaps = 24/267 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIRSGVESRKH 128 +I E+ + + + + ++ + I + IR +ES Sbjct: 1 MIKEFLDYLRFEKNRSALTVKNYGKDLMAFEEFFRLLEPQLSWESIDSNIIRDWMESMMD 60 Query: 129 TPSSA---IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 ++A + L+++R +++A+ + V +P +++ PK+K + + +M +F Sbjct: 61 RGNNATSINRRLSALRSFYRFALTRGLVDKDPTITIVGPKKKKPLPQFVKESEMDALLAF 120 Query: 186 WSEGSQ-----PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPD 239 E +Q E +G+R ++ + S+K K + Sbjct: 121 KLEVNQYKDVLAHTLVETFYCTGMRLAELIGLDEASIDFAHQSLKVLGKRNKERYIPFGA 180 Query: 240 GFMKLL--------AMTPIGKETFFINNDKQKMNATQFSIWF-KAKATKAGVNK-SAHGV 289 + L FF++ D Q++ Q K +T + K + H + Sbjct: 181 ELKESLQYYISIRDQQVQRQSTAFFVDKDGQRLTHNQVRYAVNKCLSTVTTLKKRTPHVL 240 Query: 290 RKFSATISADAGATAHELMATYGWKTV 316 R AT + GA + G +++ Sbjct: 241 RHTFATAMMNHGAGLESVQQLLGHQSL 267 >gi|170697596|ref|ZP_02888685.1| integrase family protein [Burkholderia ambifaria IOP40-10] gi|170137483|gb|EDT05722.1| integrase family protein [Burkholderia ambifaria IOP40-10] Length = 327 Score = 100 bits (250), Expect = 3e-19, Method: Composition-based stats. Identities = 48/323 (14%), Positives = 105/323 (32%), Gaps = 28/323 (8%) Query: 15 RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74 R R GK R+ + T + ++ + +++ + TL+ + Sbjct: 5 RQRDGKWQVRVRRRGFAD-EAKTFNTRTDAERWARSVETEMDRGSFVSRSEAEANTLEDI 63 Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQ---IIRKSGDFDYRKITTKHIRSGVESR--KHT 129 I+ Y + R ++ + +T K + + + R + Sbjct: 64 INLYI-----TDVCPTQRSGPDAIIRLRATCRKTLAKLSMAALTPKAVAAYRDERLKQVK 118 Query: 130 PSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 P++ I+ L + + A R+ + NP + +P R + E+ + + Sbjct: 119 PATVIRELAFLSAIINHARREWDINIPNPIALIRKPTAPQGRDRVLSIEEEARLLAELVP 178 Query: 189 GSQPRLAFE----FLLYSGLRCSDSCRAGVQHLQNNIF--SIKTQKTGTIITVELPDGFM 242 + + L +G+R + + + K GT TV L + Sbjct: 179 VGRINVWLLPATILSLETGMRRGELVALRWSDVNLEAQTAHLSMTKNGTARTVPLSKKAV 238 Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFS--IWFKAKATKAGV-NKSAHGVRKFSATISAD 299 LA P + D + + + + +AG+ + H +R + T A Sbjct: 239 ATLAALPR-------SIDGRVIPVKGLTLHAALRKACARAGIVDFHWHDLRHTAITRMAQ 291 Query: 300 AGATAHELMATYGWKTVDQAETY 322 EL A G +++ + Y Sbjct: 292 KLPNVIELAAVSGHRSLAMLKRY 314 >gi|320107543|ref|YP_004183133.1| integrase family protein [Terriglobus saanensis SP1PR4] gi|319926064|gb|ADV83139.1| integrase family protein [Terriglobus saanensis SP1PR4] Length = 419 Score = 100 bits (250), Expect = 3e-19, Method: Composition-based stats. Identities = 54/348 (15%), Positives = 98/348 (28%), Gaps = 32/348 (9%) Query: 22 IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKS 81 +Y R + +P+ A R IN + P T+ LI+ YRK Sbjct: 24 RWYDETSGKRTYKKRNLGTVKDLPSRRDAEQAVADFRANINVEVRVPITVSELIAHYRKH 83 Query: 82 AHWGSLAV-NSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139 + S Y + I K G+ + T + + S + P++ + Sbjct: 84 ELTEDKKAFATIASTSIYLTNHIAPKWGEKWLSDVRTVEVEEWLHSLPYAPATKSKIRNI 143 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFL 199 M +F A+R E+ NP V ++ T + + + Sbjct: 144 MSAVFNHAIRYEWTHRNPITKVRASSKRLREPDVLTPGEFSALVEELPL--RVKAMVILA 201 Query: 200 LYSGLRCSDSCRAGVQHLQ--------------NNIFSIKTQKTGTIIT-----VELPDG 240 +GLR S+ + + KT+ + + +E D Sbjct: 202 GSTGLRRSELVALTWRDVDPLLMQINVLRSCVRGRFGDTKTEASRKPVPLHTSVIECLDV 261 Query: 241 FMKLLAMTPIGKETF--FINNDKQKMNATQ-FSIWFKAKATKAGVNKS---AHGVRKFSA 294 + K F N + + + +A + H R A Sbjct: 262 WRKESRYNGEDDFLFPSVRNEGRTPVTPDMILKKIIRPALVRAKITGKRIGWHSFRHSLA 321 Query: 295 TISADAGATAHELMATYGWKTVDQA-ETYTKG--ADRIRLGIKNSRRI 339 T AGA + YT+ A++ K + Sbjct: 322 TNLRAAGADLKTAQELLRHANSRITLDIYTRAISANKREANNKVMEMV 369 >gi|269126616|ref|YP_003299986.1| integrase family protein [Thermomonospora curvata DSM 43183] gi|268311574|gb|ACY97948.1| integrase family protein [Thermomonospora curvata DSM 43183] Length = 338 Score = 100 bits (250), Expect = 3e-19, Method: Composition-based stats. Identities = 51/326 (15%), Positives = 94/326 (28%), Gaps = 47/326 (14%) Query: 70 TLKWLISEYRKSAHW--GSLAVNSRISFESYFDQIIRKSGD----------FDYRKITTK 117 TL+ L + ++ N+ ++ + + R D + T Sbjct: 5 TLQDLAERWLDHKRASGRGMSDNTEAAYRADLNAWGRALADHHAIDTPDQTRPLEALHTG 64 Query: 118 HIRSG--------VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169 H+ + T ++ + ++++R W VR ++ +P +E P+ Sbjct: 65 HLTAEALTAAAASFYREGKTAATRSRRISALRGWCAWLVRTGHLTADPTTDLETPRLPRR 124 Query: 170 GIRPWTKEDMQQFKSFWS---EGSQP------RLAFEFLLYSGLRCSDSCRAGVQHL--- 217 T + S +G++ R +G R + V + Sbjct: 125 LPVALTDAQLAAIVQAASTPWQGARAQWVRLDRALLALFAGAGARTGEVVALRVGDVICE 184 Query: 218 -QNNIFSIKTQKTGTIITVELP-----------DGFMKLLAMTPIGKETFFINNDK---Q 262 K G V L D LL N K Sbjct: 185 EDGGGLLRLRGKGGAHRNVPLHADAMQPVTDYLDERRALLGPFDAEDPLLVARNGKAITT 244 Query: 263 KMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 M + WF+ A + + AH R A GA+ +EL A G + + Y Sbjct: 245 GMIEYRVDQWFRRAAVRRPEGELAHVFRHTYAVGVLQNGASLNELQAVLGHQNLATTSIY 304 Query: 323 TKGADRIRLGIKNSRRISSVVDSDDP 348 TK A + + + + P Sbjct: 305 TKVAAEGLKDVARVAPVLRHLRATRP 330 >gi|189219748|ref|YP_001940389.1| Site-specific recombinase XerD [Methylacidiphilum infernorum V4] gi|189186606|gb|ACD83791.1| Site-specific recombinase XerD [Methylacidiphilum infernorum V4] Length = 280 Score = 100 bits (250), Expect = 3e-19, Method: Composition-based stats. Identities = 36/221 (16%), Positives = 73/221 (33%), Gaps = 26/221 (11%) Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAI-NPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 PSS ++R F + R++ + +P V PK R + E +Q + Sbjct: 42 KPSSIRVRFAALRSFFNFFYREKKINKESPFSQVMLPKPDRNLPRYLSLEQVQALLNAPQ 101 Query: 188 EGS------------------QPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQ 227 + + + E L +GLR + ++ + ++ + Sbjct: 102 KKWEKEKEKGKKSRWNEWQWKRDQAWLETLYGAGLRVGELSSLKRKNFFPSDLALLVEGK 161 Query: 228 KTGTIITVE---LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284 + + L P E F+++ + + F + K AG+++ Sbjct: 162 RKKERYCILGEVATASLCSYLESCPFESEFLFVSSRGKPLTPRFFQLSLKEYLAIAGLDQ 221 Query: 285 S--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 S H +R AT + GA + G + + YT Sbjct: 222 SISPHKLRHTFATHLLEGGADLRSIQELLGHAHLSTTQIYT 262 >gi|229192133|ref|ZP_04319101.1| Prophage LambdaBa02, site-specific recombinase, phage integrase [Bacillus cereus ATCC 10876] gi|228591340|gb|EEK49191.1| Prophage LambdaBa02, site-specific recombinase, phage integrase [Bacillus cereus ATCC 10876] Length = 376 Score = 100 bits (250), Expect = 3e-19, Method: Composition-based stats. Identities = 44/293 (15%), Positives = 96/293 (32%), Gaps = 28/293 (9%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHT 129 L+ + + S ++ ++ +++ + G+ I + + + Sbjct: 63 FSQLVEIWMQEKE-SSCRPSTLYQYKRILRSRVMPEFGEKRLSDIKPLTVHNFHQKLLKE 121 Query: 130 PSSAIQFLTS---MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + + ++ + V E + NP +RPK K + WT E+ +F + Sbjct: 122 GLTTKYISSVDVMLKQILDKGVELEMINSNPAKKAKRPKVKKKAQASWTIEEAMKFMEYA 181 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT------------ 234 +AF L++G+R + + + I Q+T T++ Sbjct: 182 KIQGSYYIAFVLALHTGMRIGEVLALQWKDINFESKIIHVQRTLTLVDGKYELGETKTEA 241 Query: 235 ----VELPDGFMKLLAMTPIGK-----ETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284 + + + M L K + +K+ ++ KA V Sbjct: 242 SNRMIPMTEELMGELLEYQSHKKDNSFDLLICTRNKKIVHPYTIRYQMKALCEAIDVPYI 301 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNS 336 H +R+ TI D+GA A + G V YT + ++ + Sbjct: 302 RFHDIRRTFTTILIDSGANAKVVSKLLGHTNVSTTLNIYTDVYEERQIEVTEM 354 >gi|134300616|ref|YP_001114112.1| phage integrase family protein [Desulfotomaculum reducens MI-1] gi|134053316|gb|ABO51287.1| phage integrase family protein [Desulfotomaculum reducens MI-1] Length = 367 Score = 100 bits (250), Expect = 3e-19, Method: Composition-based stats. Identities = 44/304 (14%), Positives = 101/304 (33%), Gaps = 38/304 (12%) Query: 59 EYINSPRKKPTTLKWLISEYRKSAHWGSL-----AVNSRISFESYFDQIIRKSGDFDYRK 113 E +P + + L+S+Y W + ++ + ++ GD + + Sbjct: 48 ETKLRKSLQPGS-QMLVSDYLDY--WLKRIQPSIEERTFKTYSWHLKRLKETLGDIELGE 104 Query: 114 ITTKHIRSGVESRKH-TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172 + ++ + K + +S + T+ R + AV E + +P + + P+ + + Sbjct: 105 LKVLLVQERLNELKDISETSVRKITTTFRTALRQAVVWELLEKDPTVGLRLPRNPKKEKK 164 Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-----TQ 227 + +++ +F + E + L L +G+R + + L + ++K Sbjct: 165 VLSSDELIKFLNAAKEY-KYYLVLRILAVTGMRLGECLGLMWKDLNFDKGTMKILRSADS 223 Query: 228 KTGTIITVELPDG--------------FMKLLAMTPIGKET-------FFINNDKQKMNA 266 KT ++ D K T + + + + Sbjct: 224 KTRKVLDKPKNDSSRRTVTIDKETVELLKTHRKKQAKRKVTSIRIEDELVFHVNGRPITH 283 Query: 267 TQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTK 324 K KA + H +R + +I DAG + + + G T A Y+ Sbjct: 284 KAIDRTIKTALKKAELPMIRIHDLRHTAGSILLDAGYSLPTVSSLLGHSTPATTAAIYSH 343 Query: 325 GADR 328 R Sbjct: 344 AIRR 347 >gi|327412825|emb|CAX67831.1| shufflon-specific dna recombinase [Salmonella bongori] Length = 383 Score = 100 bits (250), Expect = 3e-19, Method: Composition-based stats. Identities = 42/279 (15%), Positives = 91/279 (32%), Gaps = 23/279 (8%) Query: 62 NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121 R K +L + +Y + + F + +ITT I S Sbjct: 3 RPQRIKKMSLSKALDKYYATVSVHKRGH--QQEFYRVRVIQRHPLAEKMMDEITTVDIAS 60 Query: 122 GVESRKHTPSSAIQF----------LTSMRVLFKWA-VRQEYVAINPCLSVERPKRKTEG 170 + R ++ L + L+ A V NP V +PK Sbjct: 61 YRDDRLSQVNTRTGRCISGNTVRLELALLSSLYNLASVEWGTCRTNPVEMVRKPKISGGR 120 Query: 171 IRPWTKEDMQQFKSFWSEGSQP-RLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQ 227 R T ++ ++ ++ E + F + + +R + +H+ + + Sbjct: 121 DRRLTSQEERRLSRYFQEQNPALHAIFHLAIETAMRQGEILSLRWEHIDLQHGVAHLPMT 180 Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSA 286 K G+ V L LL T ++ + +++ F ++ + + + Sbjct: 181 KNGSSRDVPLSRKARHLL-----QGMTVALSGNVFHYSSSGFKSAWRVALQRLNIVDLHF 235 Query: 287 HGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTK 324 H +R + + + G E+ A G ++++ YT Sbjct: 236 HDLRHEAISRLFELGTLNVMEVAAISGHRSLNMLRRYTH 274 >gi|257887261|ref|ZP_05666914.1| phage integrase [Enterococcus faecium 1,141,733] gi|257823315|gb|EEV50247.1| phage integrase [Enterococcus faecium 1,141,733] Length = 378 Score = 100 bits (250), Expect = 3e-19, Method: Composition-based stats. Identities = 52/365 (14%), Positives = 117/365 (32%), Gaps = 55/365 (15%) Query: 15 RTRHGKIIYYFR--KGHGRRIRLPYPHE---STFIPAYMSALTGSTPKREY-INSPRKKP 68 R R + YYF G R ++ A L+ +Y + + + Sbjct: 6 RKRGKRWYYYFEDINDDGSRKKVEKVGGDTRPEAEAALRKVLSDIDETGQYFLGTDTRVK 65 Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESR- 126 L + + EY K +L N+ ++ + I G ++ +++ + + Sbjct: 66 QYLDFWMEEYVK----LNLKYNTYENYRFTIKNHINGYLGKKKLTDLSPALLQNFINAEF 121 Query: 127 -----KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK-----TEGIRPWTK 176 K T + L + + + + NP L V+ PK + + ++ + Sbjct: 122 KKGYSKKTMTITHSVLKNALNMAVY--PWGLIKQNPMLYVKIPKYEERPTTKKDLKIISL 179 Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK-------- 228 ED EG + Y+G+R + C ++ + +I +K Sbjct: 180 EDFDHMLEITPEGHPFYIPLNIGFYTGMRVGEVCGLTWDNVDFSNGTITVEKQMVKNDGA 239 Query: 229 --------TGTIITVELPDGFMKLLAMTP--------------IGKETFFINNDKQKMNA 266 + + T+ + + +L I + + Sbjct: 240 WVYGTPKTSSSNRTIFIGQTLLAILKKHKKQQLENRMKYGKLYIDSNAVCTKEYGELVTP 299 Query: 267 TQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKG 325 + + + ++ + H +R AT+ + GA E+ G + +TY+ Sbjct: 300 SVVKWNTRRISNALSLSFNFHSLRHTHATLLLENGAKMKEISDRLGHSRISITMDTYSHV 359 Query: 326 ADRIR 330 D++R Sbjct: 360 TDKMR 364 >gi|123967974|ref|YP_001008832.1| hypothetical protein A9601_04371 [Prochlorococcus marinus str. AS9601] gi|123198084|gb|ABM69725.1| Hypothetical protein A9601_04371 [Prochlorococcus marinus str. AS9601] Length = 321 Score = 100 bits (250), Expect = 3e-19, Method: Composition-based stats. Identities = 55/310 (17%), Positives = 96/310 (30%), Gaps = 25/310 (8%) Query: 31 RRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLA-V 89 RR P F+ ++ + P TL I++Y + Sbjct: 16 RRKNYVGPRSRNFLSRDLAESWADAVEERTKKVLNDTPVTLGEAINDYINGPLLLHRSAE 75 Query: 90 NSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPSSAIQFLTSMRVLFKWA 147 N + + GD + KH + R K P++ ++ L +RVL WA Sbjct: 76 NEKYPLRVTAESW---LGDIPLSDLQIKHFAVWRDERLLKVKPNTVMRELRILRVLIDWA 132 Query: 148 VRQE--YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS-QPRLAFE-FLLYSG 203 + + NP + T ED ++ S+ S Q L L +G Sbjct: 133 RDERGAEIKDNPARQLRVRGTGDARAPFLTNEDEKRLLFELSQMSNQNHLRLTKLALTTG 192 Query: 204 LRCSDSCRAGVQHLQNNI-FSIKTQKTGTIIT-------VELPDGFMKLLAMTPIGKETF 255 R S+ +++ +K I V P+ K+L Sbjct: 193 FRRSELLSLTWRNIDLKKKLLYIYRKNCAAIDNSSGMRLVPFPEKAQKILEELQGRDGKV 252 Query: 256 FINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWK 314 + N F KAG+ H +R + + +G +A E+ A G + Sbjct: 253 IELSKGAARNG------FDKARKKAGLETLRFHDLRHIAISRMWRSGMSALEISACSGHR 306 Query: 315 TVDQAETYTK 324 + Y+ Sbjct: 307 DIKMLMRYSH 316 >gi|194462977|ref|NP_777346.2| hypothetical protein IN93_gp29 [Thermus phage IN93] gi|194077333|dbj|BAC55308.2| unnamed protein product [Thermus phage IN93] Length = 349 Score = 100 bits (250), Expect = 3e-19, Method: Composition-based stats. Identities = 50/301 (16%), Positives = 102/301 (33%), Gaps = 31/301 (10%) Query: 51 LTGSTPKREYINSPRKKPTTLKWLISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDF 109 L PK P L ++ + + A L + ++ Y + Sbjct: 5 LARLLPKAGVGWVPDPSGLRLGDYLASWIEHRAATRDLRPTTLRNYHVYLKHV-EPIAHL 63 Query: 110 DYRKITTKHIRSGVESRKH-TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168 ++T R+ +PS +R + A+R + + NP +V+ P+ Sbjct: 64 PLSRLTPLTFRAFFAELAGFSPSHRRHIYQFLRAALRDAMRADLLDQNPMDAVDPPRGGA 123 Query: 169 -EGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-- 225 + W E++ +F S+G + F +L + LR ++ + + ++ ++ Sbjct: 124 VRPAKAWKPEEVARFLE-ASKGHRLYPLFALMLATRLRPGEALALRWEDWEGDVLHVRHT 182 Query: 226 --------TQKT-GTIITVELPDG-----------FMKLLAMTPI--GKETFFINNDKQK 263 KT G++ + L + A TP F ++ Sbjct: 183 LRRDGTLGPAKTPGSVAPIYLDPDTQALLAWWRERLEEEKASTPDWQDHGLMFPSSKGTP 242 Query: 264 MNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVD-QAET 321 + F F A KAGV++ + HG+R +++ AG + A + Sbjct: 243 LEYNNFKRAFYALQEKAGVSRITPHGLRHTYTSLALRAGLPPKVVAARLRHADPTFTVKV 302 Query: 322 Y 322 Y Sbjct: 303 Y 303 >gi|326331386|ref|ZP_08197676.1| tyrosine recombinase XerC [Nocardioidaceae bacterium Broad-1] gi|325950642|gb|EGD42692.1| tyrosine recombinase XerC [Nocardioidaceae bacterium Broad-1] Length = 331 Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats. Identities = 42/301 (13%), Positives = 103/301 (34%), Gaps = 46/301 (15%) Query: 71 LKWLISEY---RKSAHWGSLAVNSRISFESYFDQIIRKSGD-------------FDYRKI 114 ++ ++ R + L SR ++ R+ + Sbjct: 2 FGDVVEDFLTDRATLTRRGLNDKSRSAYRQDIVAWARQLHVDAGGEPDADVLALVPISAL 61 Query: 115 TTKHIRSGVESRKHTPSSAI--QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172 T +++R S + ++A + + ++R+ W + ++ ++P L +E P+R + Sbjct: 62 TDQNVRIAYRSLRENSAAATCQRRVGTLRLFTHWLQLEGHLLVDPTLRIEAPERPSRLPA 121 Query: 173 PWTKEDMQQFKSFWSEG----------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ---N 219 W+ +++++ S ++ R F L+ +G+R ++ C V ++ + Sbjct: 122 GWSVDELRRLARVASTPREGTDRRRWPTRDRAIFAVLVTTGVRAAELCDLTVGSIRREPD 181 Query: 220 NIFSIKT-QKTGTIITVELPDGFMKLLAM----------TPIGKETFFINNDKQKMNATQ 268 ++ K + LP + + T + F+ +++ Sbjct: 182 GETLVRVIGKGDKQRNLPLPPEAVDAVDAYLAELEARFGTRDPADNLFVLTSGKQLRPGA 241 Query: 269 FSIWFKAKATKAGVNKS----AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 + + AGV K AH R +A +G + G + + Y K Sbjct: 242 LNHLVETWIRLAGVPKQPGEAAHAFRHSAAKGLIRSGVPVPAVQGLLGHEDLKTTGIYVK 301 Query: 325 G 325 Sbjct: 302 A 302 >gi|296158318|ref|ZP_06841149.1| integrase family protein [Burkholderia sp. Ch1-1] gi|295891262|gb|EFG71049.1| integrase family protein [Burkholderia sp. Ch1-1] Length = 348 Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats. Identities = 64/328 (19%), Positives = 108/328 (32%), Gaps = 26/328 (7%) Query: 15 RTRHGKIIYY--FRKGHGRRIR-LPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71 R R G ++ FR G RIR Y L + + K+ T Sbjct: 4 RKRKGSPTWHIDFRTPGGERIRQSTGTANKKEAEEYHDRLKAELWRVSKLG--EKQKRTW 61 Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV-----ESR 126 K + VN+RI + + IT I + ++ Sbjct: 62 DEAAVRMLKESAHLRSFVNTRI----HLRYFRKFFAGRLLESITRDEIYEALPELSARTK 117 Query: 127 KHTPSSA---IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 + P SA +L +MR +F A+ E++A P L + K + R T+++ Q+ Sbjct: 118 QPKPLSAKTKNLYLGTMRHMFNLAIEWEWLAQAPIL--KAAKVSNKRFRFLTRDEAQRLI 175 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ----NNIFSIKTQKTGTIITVELPD 239 + S R +GLR ++ + K I V L D Sbjct: 176 AAIST-EWLRDVAILGFATGLRRANLLGLEWSQVDLVNRRAWIHADQAKARKAIGVPLND 234 Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISA 298 + ++ T + + S ++ + +AG+ + H VR A+ A Sbjct: 235 EAVAVIRRWIGRHPTHVFVRRGR-IIPNVISEQWQNQCKRAGIEDFRFHDVRHTWASWHA 293 Query: 299 DAGATAHELMATYGWKTVDQAETYTKGA 326 AG + LM GW + Y A Sbjct: 294 QAGTPLNRLMELGGWTKYEHVLRYAHLA 321 >gi|212703032|ref|ZP_03311160.1| hypothetical protein DESPIG_01070 [Desulfovibrio piger ATCC 29098] gi|212673620|gb|EEB34103.1| hypothetical protein DESPIG_01070 [Desulfovibrio piger ATCC 29098] Length = 327 Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats. Identities = 50/275 (18%), Positives = 97/275 (35%), Gaps = 35/275 (12%) Query: 85 GSLAVNSRISFESYFDQII-----RKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQF 136 L+ ++I++ + Q+ R + +++ KHI++ + S+ + Sbjct: 33 RGLSPTTQIAYGTDLRQLALFLAQRGASLARPAEVSKKHIQAWLARLYALGEAKSTMARK 92 Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQFKSFWSEGS-- 190 L + R F++ R N V PK++ R + + + GS Sbjct: 93 LAAARTFFRYQQRMGRTENNVAAQVRNPKQEQRHPRVLNVDQAFAVLDTPDALAGTGSPR 152 Query: 191 -----------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-ELP 238 + E L SGLR S++ V L+ + ++ G + L Sbjct: 153 IPPATGDALAARDHALAELLYGSGLRISEALGLDVTDLRLDESVVRVFGKGARERMSPLS 212 Query: 239 DGFMKLLAM--------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGV 289 D + L P G++ F+ +++ + + AGV S H + Sbjct: 213 DTSVTALRAWLEQRGTLAPEGEKALFVGARGGRLDRREAMRRIERLCRNAGVEPVSPHAL 272 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 R AT DAGA + G + + + YT+ Sbjct: 273 RHSFATHLLDAGADLRSVQELLGHQRLTTTQRYTR 307 >gi|170289596|ref|YP_001739834.1| integrase family protein [Thermotoga sp. RQ2] gi|281413176|ref|YP_003347255.1| integrase family protein [Thermotoga naphthophila RKU-10] gi|170177099|gb|ACB10151.1| integrase family protein [Thermotoga sp. RQ2] gi|281374279|gb|ADA67841.1| integrase family protein [Thermotoga naphthophila RKU-10] Length = 253 Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats. Identities = 44/254 (17%), Positives = 86/254 (33%), Gaps = 32/254 (12%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES-RKHTPSSAIQFLTSMRVL 143 + + + S + R + +T + + + + K+TP++ L ++ Sbjct: 12 KKRSERTLYQYRSILREFTR------FEPVTPETWKEYLNTISKNTPATQRNKLVVVKNY 65 Query: 144 FKWAVRQEYVAI-----NPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEF 198 W + + I N P R T + +++++ S R F+ Sbjct: 66 LNWKADRGLLNIEERFWNEAE----PPRHTVLPKAIELDEVRRIIEACD-NSLYRAIFKV 120 Query: 199 LLYSGLRCSDSCRAGVQHLQNN---IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF 255 L +G+R S+ V + N IK + I + + ++ L F Sbjct: 121 LANTGMRVSEIVNLSVHDISVNETARIRIKGKGNKERI-INISKELVEELM-----NSGF 174 Query: 256 FINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGW 313 F +K + K A KAG+ K + H R A + G +++ A G Sbjct: 175 FE----KKPSVRSIQRAVKRYARKAGIKKKVTPHIFRHSFAVALIERGVPLNKIQALLGH 230 Query: 314 KTVDQAETYTKGAD 327 + Y K A Sbjct: 231 ANISTTSIYLKIAS 244 >gi|49146142|ref|YP_025580.1| site-specific recombinase [Mycobacterium ulcerans Agy99] gi|42414776|emb|CAE46869.1| possible site-specific recombinase [Mycobacterium ulcerans Agy99] Length = 345 Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats. Identities = 45/314 (14%), Positives = 98/314 (31%), Gaps = 57/314 (18%) Query: 77 EYRKSAHWGSLAVNSRISFESYFDQII-------RKSGDFDYRKITTKHIRSGVESRKHT 129 E+ + ++ ++ F+ + + + +R+ T Sbjct: 21 EFLADRAIRKPSPHTTKAYRQDFEAVALLLAGGADAISTLPTNALNKESLRAAFAVYAET 80 Query: 130 --PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ------- 180 +S + ++ L + + NP ++ RPK + +T + + Sbjct: 81 HSAASIRRCWSTWNTLCTFLYTANLLDANPMPAIGRPKVPKALPKSYTADAVNNLIAAID 140 Query: 181 -----QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ---NNIFSIKTQKTGTI 232 +S W E + R L +GLR + RA + ++ + + K Sbjct: 141 TDDGSARRSNWPE--RDRAIIFTALLTGLRADELIRANIGDIRCNADGGVLHVSGKGNKD 198 Query: 233 ITVELPDGFMKLLAM-----------------------TPIGKETFFINNDKQKMNATQF 269 + +++L F+ +D +++ Sbjct: 199 RRIPCDTKLIEMLQRYLQTREDRIPHLRKRSASPDVMGRFSPTAPLFVGSDGERITRGTL 258 Query: 270 SIWFKAKATKAGVNKS------AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 KAG+N HG+R AT A+A + + LM G +++ ++ Y Sbjct: 259 QYRILRGFKKAGINNDRAAGALVHGLRHTFATELANANVSVYALMKLLGHESMVTSQRYV 318 Query: 324 --KGADRIRLGIKN 335 AD R +N Sbjct: 319 DGAAADTRRAAERN 332 >gi|54303070|ref|YP_133063.1| hypothetical protein PBPRB1396 [Photobacterium profundum SS9] gi|46916498|emb|CAG23263.1| hypothetical protein PBPRB1396 [Photobacterium profundum SS9] Length = 295 Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats. Identities = 41/285 (14%), Positives = 90/285 (31%), Gaps = 21/285 (7%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKHTPS 131 L ++ + + ++ +I + +TT ++ S + H+ S Sbjct: 12 LYEQHLTNLTLQGKRPATIDAYSRAVRRISQFFDRCP-DAMTTADLKQYFASLIQTHSWS 70 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191 + ++ ++ + +E+ ++ + +P + + T + + S + Sbjct: 71 TVKLDRNGLQFFYRHTLEKEWQWLD----IVKPPQSKKLPDIITAQQVALLISMTK--QK 124 Query: 192 PRLAFEFLLYS-GLRCSDSCRAGVQHLQNNIF--SIKTQKTGTIITVELPDGFMKLLAM- 247 F LY+ GLR + V + + I+ K G V +P + L Sbjct: 125 RYQIFFLTLYTMGLRLGEGLSLTVHDIDQHTMQVHIRDGKGGKDRLVPVPQRTLNALRAH 184 Query: 248 -TPIGKETFFINNDK----QKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300 M+ K G+NK S H +R AT + Sbjct: 185 WLTHRHPRLIFPGKGCNTDNPMDRGGVQKAMKLVLKDCGINKPISPHSLRHCFATHLLEQ 244 Query: 301 GATAHELMATYGWKTVDQAETYTKGAD-RIRLGIKNSRRISSVVD 344 G L G +++ YT+ + R R++ + Sbjct: 245 GLDLRSLQILLGHASLNTTARYTRMTQIKQRDAALAINRLADALT 289 >gi|10955493|ref|NP_065345.1| site-specific recombinase [Escherichia coli] gi|48994|emb|CAA44100.1| site-specific recombinase [Escherichia coli] gi|9971687|dbj|BAB12638.1| rci [Escherichia coli] Length = 374 Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats. Identities = 45/274 (16%), Positives = 97/274 (35%), Gaps = 19/274 (6%) Query: 65 RKKPTTLKWLISEYRKSAHWGS---LAVNSRIS---FESYFDQIIRKSGDFDYRKITTKH 118 + + T+ + +Y K+ L R++ ++ + D + Sbjct: 6 KIRKMTISRALDKYLKTVSIHKKGHLQEFYRVNVIKRHPIAERYMDDITTVDIANYRDQR 65 Query: 119 IRSG--VESRKHTPSSAIQFLTSMRVLFKWA-VRQEYVAINPCLSVERPKRKTEGIRPWT 175 + R+ T ++ L + LF A V +NP V +PK + R T Sbjct: 66 LAQINPRTGRQITGNTVRLELALLSSLFNIARVEWGTCRMNPVELVRKPKISSGRDRRLT 125 Query: 176 KEDMQQFKSFWSEGSQP-RLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQKTGTI 232 + ++ ++ E +Q + F L + +R + +H+ + + T K G Sbjct: 126 SGEERRLSRYFKEKNQALYVIFHLALETAMRQGEILSLRWEHVDLQHGVAHLPTTKNGAP 185 Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRK 291 V L L M P +N + ++ F ++ + + N H +R Sbjct: 186 RDVPLSRKARNYLQMLPTQ-----LNGNIFSYTSSGFKSAWRTALQELKIENLHFHDLRH 240 Query: 292 FSATISADAG-ATAHELMATYGWKTVDQAETYTK 324 + + + G E+ A G ++++ + YT Sbjct: 241 EAISRFFELGTLNVIEVAAISGHRSLNMLKRYTH 274 >gi|56461653|ref|YP_156934.1| site-specific recombinase XerC [Idiomarina loihiensis L2TR] gi|56180663|gb|AAV83385.1| Site-specific recombinase XerC [Idiomarina loihiensis L2TR] Length = 300 Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats. Identities = 36/271 (13%), Positives = 84/271 (30%), Gaps = 26/271 (9%) Query: 85 GSLAVNSRISFESYFDQ------IIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLT 138 LA + +++ + + + R + + G S L+ Sbjct: 18 RGLAELTLKNYQRLIAADLTALELQKITEPKALRVPVIERLLVGWRRNGLGERSIALKLS 77 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE---GSQPRLA 195 + R ++ V + NP +SV PK + + + ++ + Sbjct: 78 AWRTFCQFMVESNAMDDNPAMSVSAPKIPKRLPKNLDVDSISHLLDLPTDDDLAIRDAAM 137 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV------------ELPDGFMK 243 E L SG+R ++ + H+ + + ++ G+ + + Sbjct: 138 MELLYASGIRLAELVSLDLDHIDHRMMQLRVTGKGSKTRIVPFGRCAEKALKKWLSVRQA 197 Query: 244 LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAG 301 L P + F++ Q+++ + GV + H +R A+ ++ Sbjct: 198 WLNQKP--ELALFVSKRLQRISPRTVQQRLNYWGKQQGVVGDLHPHKLRHSFASHMLESS 255 Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLG 332 + G + + YT D RL Sbjct: 256 GDLRAVQEMLGHANLSTTQVYTH-LDFKRLA 285 >gi|168238497|ref|ZP_02663555.1| phage integrase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194734720|ref|YP_002114907.1| phage integrase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|194710222|gb|ACF89443.1| phage integrase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197288650|gb|EDY28025.1| phage integrase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] Length = 359 Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats. Identities = 49/287 (17%), Positives = 96/287 (33%), Gaps = 34/287 (11%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--- 126 T+ I Y SL+VN+ + + K G+ ++TT+HI +ES Sbjct: 75 TVSAWIDRYEVLLQRRSLSVNTYKIRGNQLVTVREKMGEIILAEVTTRHIAKFLESWITE 134 Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 K+T + A++ + + +F+ A+ + ++ NP + P+ K R ++ + + Sbjct: 135 GKNTMAGAMR--SVLSDMFREAIVEGHIVKNPVEATRIPEVKVARERL----QLETYNAT 188 Query: 186 WSEGSQPRLAF----EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241 + F + L +G R D + +N + KTG I + L Sbjct: 189 RAAAEHMPAWFPLAMDLALVTGQRREDIVNMKFSDVFDNRLYVTQIKTGMKIAIPLSLTL 248 Query: 242 MK--------LLAMTPIGKETFFI------NNDKQKMNATQFSIWFKAKATKAGVNKS-- 285 + + + F I N+ ++ + F +GV S Sbjct: 249 RATGLRLGTVIDRCRLVSRTDFMISAGIRKNSPTGNIHPDGLTKKFVKARKISGVKFSDN 308 Query: 286 ---AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 H +R A G + + + Y D Sbjct: 309 PPTFHEIR-SLAGRLYKDERVEEFAQKLLGHTSENTTKLYLDERDNK 354 >gi|42524456|ref|NP_969836.1| site-specific recombinase [Bdellovibrio bacteriovorus HD100] gi|39576665|emb|CAE80829.1| site-specific recombinase [Bdellovibrio bacteriovorus HD100] Length = 294 Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats. Identities = 44/283 (15%), Positives = 99/283 (34%), Gaps = 17/283 (6%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH------IRSGVESRK 127 I +Y K + S + + + Q D + + R+ Sbjct: 11 IDKYLKYMTFIKSASPLTIKHYSLDLMQ-AFNYEDPSVKAKSISESELLSTARAAFNQWA 69 Query: 128 H-TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----MQQF 182 H + +S + +++ F WA + + + + PK + + ++ ++ F Sbjct: 70 HLSLASRNRKAATLKSFFSWAFEESLTEKDLSVQITCPKVPKKLPHFVSVDEALSVLKSF 129 Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242 S + ++ F L GLR S++C +Q + ++ + G+ V Sbjct: 130 DSETKIPLKEKVLFLLLYGGGLRVSEACNLKWSEVQTSQKVLRVKGKGSKERVVALPSLT 189 Query: 243 KLLAMTPIGKETFFINNDK-QKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISAD 299 + + + +F + +N+ + +AG+ H +R AT Sbjct: 190 VEVLLKWKKESSFDEYVFGEKPLNSRTAYEMVRQSGIRAGLLKPLHPHALRHSFATHLLS 249 Query: 300 AGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNSRRISS 341 +GA L G +++ E YT G D++ ++N + Sbjct: 250 SGANLRTLQELLGHESLQATEKYTHLGIDQLARTMENLHPLGK 292 >gi|71909266|ref|YP_286853.1| Phage integrase [Dechloromonas aromatica RCB] gi|71848887|gb|AAZ48383.1| Phage integrase [Dechloromonas aromatica RCB] Length = 340 Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats. Identities = 49/333 (14%), Positives = 99/333 (29%), Gaps = 31/333 (9%) Query: 15 RTRHGKIIYYFRKGHGRRI----RLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70 R R G R+ + +L E + A+ Y++ + T Sbjct: 5 RQRSGGWQVRVRRQGYPDVVKTFKLRQDGEK-----WARAIERELDMGCYVHRTEAERMT 59 Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130 L L+ Y K + + + + +T + + R Sbjct: 60 LAELLDRYGKEVSPQHKGHREELWKIGVI--LRDRIAKYSLVALTPMLVADYRDRRLQVV 117 Query: 131 S--SAIQFLTSMRVLFKWA-VRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + +A L + +K A NP ++RP E R ++ +++ Sbjct: 118 ADATARHELNIISAAYKVAAREWGIPVSNPVSQIKRPPAGRERKRRISQAEIEAIIQHSK 177 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTIITVELPDGFMKLL 245 P + +G+R + R Q + + K G V L + +L Sbjct: 178 TRELPDF-LCLAVTTGMRRGEIIRLRWQDIDMGRRLAYLSDTKNGEDRVVPLSSEALAVL 236 Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKAT------KAGV--------NKSAHGVRK 291 P + + + + + +A+ AGV + H R Sbjct: 237 QAMPRRFDGRLFSLEPRGFSKAMRKSVVRARRAYEAESSLAGVQPDPEFLCDLRLHDARH 296 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTK 324 + + + G E+ + G KT+ + YT Sbjct: 297 EAVSAFFERGLDVMEVASISGHKTLSCLKRYTH 329 >gi|295402897|ref|ZP_06812822.1| integrase family protein [Geobacillus thermoglucosidasius C56-YS93] gi|294975066|gb|EFG50719.1| integrase family protein [Geobacillus thermoglucosidasius C56-YS93] Length = 301 Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats. Identities = 40/286 (13%), Positives = 92/286 (32%), Gaps = 36/286 (12%) Query: 88 AVNSRISFE----SYFDQIIRKSGDFDYRKITTKHIRSGVESRKH----TPSSAIQFLTS 139 + S+ + ++ G++ + I+ + KH P++ +++ + Sbjct: 18 DEKTIASYRTTVVHFLTWKEQRDGEYIIEETRPIDIKEYISYLKHQCKRKPATINKYIAA 77 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKR---KTEGIRPW-TKEDMQQFKSFWSE------G 189 ++V F + + + NP ++ K W TKE+ +F S+ Sbjct: 78 LKVFFAFLLSSGIIKDNPMTRIKVEKLDYANGANQTKWLTKEEQDRFISYVQLEPNEFKR 137 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVEL-------- 237 + + +LYSGLR ++ + + ++ I+ K TV L Sbjct: 138 LRNLAIIDLMLYSGLRVNEVSSLEINDIITKDKDVQVIIREGKGNKFATVILVQKHAKNL 197 Query: 238 ---PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFS 293 L F++ A A ++ + H R Sbjct: 198 RKWLKYRKGLDKDIHKSSPRLFVSERSPFFTERGIQKMLNKYAELANMDHITPHRFRHSF 257 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339 A+AG + +++ Y + + + I+ R++ Sbjct: 258 CKNLANAGTPIELIRRLARHESIQTTAIYLESSQEEQ--IEALRKV 301 >gi|227823255|ref|YP_002827227.1| site-specific tyrosine recombinase XerD [Sinorhizobium fredii NGR234] gi|227342256|gb|ACP26474.1| tyrosine recombinase XerD [Sinorhizobium fredii NGR234] Length = 313 Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats. Identities = 44/270 (16%), Positives = 87/270 (32%), Gaps = 30/270 (11%) Query: 85 GSLAVNSRISFESYFD---QIIRKSGDF--DYRKITTKHIRSGVESRKHTPSSAIQFLTS 139 A+N+ S+E +R SG K S + SS + L++ Sbjct: 20 RGAAINTLQSYERDLRDALAFLRSSGARLNSATADDLKRYLSHLAGEGFKSSSQARRLSA 79 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS-----------E 188 +R +K+ + +P ++ PK+ + + +D+ + Sbjct: 80 LRQFYKFLYAEGLRGDDPTGILDAPKKARALPKTLSIDDVTRLIGQAEAEAAAGGEDAFA 139 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHL-QNNIFSIKTQKTGTIITVELPDGFMKLLA- 246 + E L +G+R S+ L QN F + K V L ++ + Sbjct: 140 RLRMHALIELLYATGMRVSELVSLPASVLAQNGRFLVIRGKGNKERLVPLSQAAIRAMRT 199 Query: 247 -------MTPIGKETFFINNDKQ--KMNATQFSIWFKAKATKAGVNK---SAHGVRKFSA 294 + + + + + F+ K+ A +AG+ S H +R A Sbjct: 200 YGDALRRRAAEAESPWLFPSSGKSGHLPRQVFARDLKSLAARAGIRVAVISPHVLRHAFA 259 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTK 324 + GA + G + + YT Sbjct: 260 SHLLANGADLRAVQELLGHSDISTTQIYTH 289 >gi|167620939|ref|ZP_02389570.1| putative integrase/recombinase [Burkholderia thailandensis Bt4] Length = 342 Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats. Identities = 48/327 (14%), Positives = 105/327 (32%), Gaps = 24/327 (7%) Query: 27 KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGS 86 + G + + +++ + +++ + TT L+ Y Sbjct: 17 RRKGYPTQTKTFETKKAAEKWATSVENEMNRGSFVDRSELETTTFGELLDRYAVEVTTAK 76 Query: 87 LAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT--PSSAIQFLTSMRVLF 144 + + + + + S R T P++ + + + +F Sbjct: 77 RGRETEMVRIRALKK--HPLAARTLASLRSMDFASYRNERLKTCSPATVKREMVIISHVF 134 Query: 145 KWAV-RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF--KSFWSEGSQPRLAFEFLLY 201 A NP + +P+ K R ++ + + S + + Sbjct: 135 THANNEWSLPVGNPLAGIAKPREKDHRERRLRDDEESRLVEAAHNSRAATLSFCIVLAIE 194 Query: 202 SGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMTPI----GKETF 255 +G+R + + + + N+ + K G +V L + + P G+ T Sbjct: 195 TGMRAGEIVKLRWEQIDLANHTIRLNLTKNGHARSVPLSERAEAAIRALPRSIHGGRLTS 254 Query: 256 FINNDKQKMNATQFSIWFKAKATKAG-VNKSAHGVRKFSATISADAGATAHELMATYGWK 314 F ++ S F+ +AG V H +R +A+ A A L GWK Sbjct: 255 FYDSRG-------LSAAFRRACERAGVVGLRFHDLRHEAASRLAPH-MPASTLAKVMGWK 306 Query: 315 TVDQAETYTKGADRIRLGIKNSRRISS 341 T+ A Y D+ + R++S+ Sbjct: 307 TLQMAMRYYNPTDQEL--VTAVRKVSA 331 >gi|149195410|ref|ZP_01872494.1| Integrase [Caminibacter mediatlanticus TB-2] gi|149134460|gb|EDM22952.1| Integrase [Caminibacter mediatlanticus TB-2] Length = 315 Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats. Identities = 51/303 (16%), Positives = 102/303 (33%), Gaps = 37/303 (12%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIR--------KSGDFDYRKITTKHIRSGVE 124 WL K + + N+ +F++ ++ I D D++ I++ + Sbjct: 16 WLNEA-IKDRKLLNQSENTIYTFKNSIEKFIEFCYLERINDYPDLDFKDFNKYFIKNYIS 74 Query: 125 SRKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER--PKRKTEGIRPWTKEDM 179 K PSS L + FK+ ++ +++ K + I ++ E++ Sbjct: 75 YLKDLNYKPSSINTHLKYLYAFFKFISENNEDGVDLLYKLDKIFLKEEKNVIYTFSNEEL 134 Query: 180 QQF-------KSFWSEGSQPRLAFEFLLY--SGLRCSDSCRAGVQHLQ--NNIFSIK-TQ 227 ++ + + R AF L +G R S+ ++ F +K T Sbjct: 135 EKIQLALINKLNLTKSYTTFRNAFIVYLLSLTGARVSEIINLKNDDIKENGEFFYLKLTG 194 Query: 228 KTGTIITVEL--------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK 279 K V + + +L I E F + K T + K Sbjct: 195 KGNKERIVPIEKDYIIDFLEKLQELKDKDNINSEYFLPDKQGYKTAITSIQSFNKTLLKN 254 Query: 280 AGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGADRIRLGIKNSRR 338 G+ + H R ATI + G + + G ++ A Y K D+ + + R+ Sbjct: 255 LGIKGNIHQYRHTFATILLEKGVDINTIKELLGHSSIQTTASYYAKVTDKAK--QEAIRK 312 Query: 339 ISS 341 + Sbjct: 313 LKE 315 >gi|67925842|ref|ZP_00519134.1| Phage integrase:Phage integrase, N-terminal SAM-like [Crocosphaera watsonii WH 8501] gi|67852313|gb|EAM47780.1| Phage integrase:Phage integrase, N-terminal SAM-like [Crocosphaera watsonii WH 8501] Length = 290 Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats. Identities = 46/242 (19%), Positives = 91/242 (37%), Gaps = 8/242 (3%) Query: 88 AVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFK 145 + +R ++S Q IR G + + +E + + PS+ L++++ LF Sbjct: 23 SKLTRQHYQSNIKQFIRFIGLSLEEVKIEDINGFVRMLELKGNKPSTIKGKLSTVKSLFS 82 Query: 146 WAVRQEYVAINPCLSVERPKRKTE-GIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGL 204 +A + Y+ N + V+ PK ED+++ + + RL + + + GL Sbjct: 83 FAYKVGYLTSNVTVLVKSPKVNKRTASMRIEHEDIRKMVDGTNS-KRDRLIIKMMFFLGL 141 Query: 205 RCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ-- 262 R S+ R N I + + F++L + TF ++ Sbjct: 142 RVSEVLRLKWSDFYQNKVFISGKGNKERSLNLPEELFLELSELKSEFNPTFVFTAYQKDE 201 Query: 263 KMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320 ++ +I + G++ H R + S D G H L + G +V E Sbjct: 202 QLKRQAVNIMLNRLKKRLGIDANIHPHKFRHEHSMTSLDNGCDIHLLSRSLGHGSVSITE 261 Query: 321 TY 322 +Y Sbjct: 262 SY 263 >gi|224370500|ref|YP_002604664.1| Phage integrase/recombinase family protein [Desulfobacterium autotrophicum HRM2] gi|223693217|gb|ACN16500.1| Phage integrase/recombinase family protein [Desulfobacterium autotrophicum HRM2] Length = 301 Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats. Identities = 38/274 (13%), Positives = 83/274 (30%), Gaps = 31/274 (11%) Query: 88 AVNSRISFESYFDQIIRKSGDFDYRKITTK------HIRSGVESRKHTPSSAIQFLTSMR 141 + NS +++ + G ++ T + ++ + + + L+++ Sbjct: 19 SDNSVDTYDRAIRTFLDFLGISSPEELRTITHGHVIAFKKFLQDQGRSARTINNRLSAIS 78 Query: 142 VLFKWAVRQEYVAINPCLSVER--PKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRLA 195 LF + Q+ V IN V+R + +++ + G + + Sbjct: 79 SLFNHLIDQQVVKINVAQGVKRMPVNASRVEAKVLAPVEVRNLLNSPDVSKLQGLRDKAI 138 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIK---TQKTGTIITVELPDGFMKLLA------ 246 L ++G R S+ C V+ K G + + L Sbjct: 139 LSTLFFTGCRVSEVCSLKVRDFYEEQGFFVLDFWVKGGKRNRMAINQELQITLDQYLTET 198 Query: 247 -MTPIGKETFFI--------NNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATI 296 P F+ + K+K++ F A G+ + H R T Sbjct: 199 GHGPDQASFLFLPVKSGYKALDPKRKLSRRTIDHLFNKYANTIGIAGITPHSARATFITQ 258 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 + + + T G + + Y K + R Sbjct: 259 ALENNCPIEAVQKTVGHAQIKTTQMYDKRTAKYR 292 >gi|224369008|ref|YP_002603172.1| predicted bacteriophage P4 integrase [Desulfobacterium autotrophicum HRM2] gi|223691725|gb|ACN15008.1| predicted bacteriophage P4 integrase [Desulfobacterium autotrophicum HRM2] Length = 386 Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats. Identities = 63/346 (18%), Positives = 123/346 (35%), Gaps = 50/346 (14%) Query: 22 IYYFRKGHGRRIR-LPYPHESTFI-----------PAYMSAL--TGSTPKREYINSPRKK 67 ++YF+K ++R LP P++ + Y+ + G K E + + Sbjct: 18 VWYFQK----KVRGLPKPYKFSLDTKSVVEARKKRDEYLLEVKVNGFIQKNEVVVVNPED 73 Query: 68 PTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR 126 T + ++ + ++ ++ + + I+ + G+ IT I V Sbjct: 74 GTCFGEIAVQWAELKK-TKVSKSTIQEYRKVMNKYILPQFGNRRIDSITGLEIEVLVSKL 132 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 K + LT + + ++A + + + NP V+ KR++ I P + +++ F Sbjct: 133 KCGGKTKNNILTPFKDVMRFAKKHKLIQHNPFDDVDSIKRESSEIHPLSLGEIKLFLEHV 192 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT------------GTIIT 234 + +P F FL ++G R ++ + + I KT G+I T Sbjct: 193 PDYYRPL--FTFLFFTGARFGEAAALKWKRVDLTNGMIHIAKTYVRGEYKDPKTKGSIRT 250 Query: 235 VELPD----GFMKLLAMTPIGKETFFINNDKQKMNATQFS-IWFKAKATKAGV--NKSA- 286 V+L + T E F+N + ++ + F+ KAG+ NKS Sbjct: 251 VKLSPIVIDALHQQREHTMDKSEFVFLNTLGRHIHPHSVNLHVFRPTLEKAGLSANKSFS 310 Query: 287 -------HGVRKFSATISADAGATAHELMATYGWKTVDQ-AETYTK 324 R T S D + G T E Y + Sbjct: 311 AATRRSCKDTRSSYITNSLDNNERMGFVQKQVGHTTTKMIVEHYYR 356 >gi|254450213|ref|ZP_05063650.1| phage integrase [Octadecabacter antarcticus 238] gi|198264619|gb|EDY88889.1| phage integrase [Octadecabacter antarcticus 238] Length = 315 Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats. Identities = 43/266 (16%), Positives = 82/266 (30%), Gaps = 17/266 (6%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132 L + ++ ++ G T +R+ T + Sbjct: 28 ALRQRMIEDMRIRAIGETTQKGHIRAIKHFATFLGRSPDTA-TPDELRAYQLHMTDTDVT 86 Query: 133 A---IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM-QQFKSFWSE 188 + S+R+ F +E + ++ ++ + E++ + Sbjct: 87 TSTFNTRIVSLRLFFGVTCGREEMKR----YMQFRRKPRRLPVVLSVEEIGDLLAAVPGP 142 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTIITVELPDGFMKLLA 246 G R A +GLR S+ C V + + + K G L G + LL Sbjct: 143 GLTYRAALGISYGAGLRASEVCHLKVVDIDSGRMLIHVDEGKNGKDRKAMLSPGLLDLLR 202 Query: 247 ---MTPIGKETFFINNDK-QKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300 + + F K ++ Q + F + AG+NK + H +R AT +A Sbjct: 203 EYWLEARPEGWLFPGKPKINPLSPRQLNRAFTSAKHMAGINKPATLHTLRHSFATHLLEA 262 Query: 301 GATAHELMATYGWKTVDQAETYTKGA 326 G + G + YT A Sbjct: 263 GTDVRVIQVLLGHSKLSTTARYTHVA 288 >gi|323138675|ref|ZP_08073741.1| integrase family protein [Methylocystis sp. ATCC 49242] gi|322396030|gb|EFX98565.1| integrase family protein [Methylocystis sp. ATCC 49242] Length = 408 Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats. Identities = 41/280 (14%), Positives = 92/280 (32%), Gaps = 18/280 (6%) Query: 58 REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITT 116 S + ++ ++ + + NS E + I+ + GD ++ Sbjct: 95 AAAKVSQQPARDSIAEIVDLFLEKHVKPKTRPNSARETERLLRREIVARWGDRKLSTVSR 154 Query: 117 KHIRSGVESRKHT-PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175 +R +E P + + L + R L WAV ++ + +PC ++ + R + Sbjct: 155 GDVRRLLEETAERAPVLSNRVLAAFRKLCGWAVERDIIVASPCDKLKPVAAENSRDRVLS 214 Query: 176 KEDMQQF-KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK----TQKTG 230 +++ ++ G F+ L +G R S+ + K G Sbjct: 215 DDELAAVWRAVDGLGFPFGPMFQLLALTGQRRSEVAGMTWAEVDLASALWTIPAARSKNG 274 Query: 231 TIITVELPDGFMKLLAMTPI--GKETFFINNDKQKMNATQFSIW-----FKAKATKAGVN 283 V L +K++A P G + F ++ + + A +G + Sbjct: 275 LEHRVPLSPQAVKIIAALPRFAGGQGFLFSSGDTPPSGFSRAKRRLDDALSTMAKASGDD 334 Query: 284 K----SAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319 + H +R+ + + A G + + A Sbjct: 335 GMPPFALHDLRRTAVSGMARLGVALPIIERVVNHISGSFA 374 >gi|255527617|ref|ZP_05394479.1| integrase family protein [Clostridium carboxidivorans P7] gi|296187660|ref|ZP_06856054.1| site-specific recombinase, phage integrase family [Clostridium carboxidivorans P7] gi|255508689|gb|EET85067.1| integrase family protein [Clostridium carboxidivorans P7] gi|296047617|gb|EFG87057.1| site-specific recombinase, phage integrase family [Clostridium carboxidivorans P7] Length = 329 Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats. Identities = 42/265 (15%), Positives = 91/265 (34%), Gaps = 15/265 (5%) Query: 88 AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS----SAIQFLTSMRVL 143 + S ++S + ++R G + ITT+ +R + S S + Sbjct: 68 SEKSIKYYKSTIENMLRTLG-KPVKHITTEDLRGYLAEYHKRSSCSKVSIDNIRRILSTF 126 Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSG 203 F W + Y+ +P + + K +T E+++ + E + + L +G Sbjct: 127 FSWLEDENYILKSPVRRIHKIKTGKIVKEVYTDENLEIMRDSCKE-IRDLAIIDLLNSTG 185 Query: 204 LRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDG----FMKLLAMTPIGKETFFIN 258 +R + + + + N I K V + F++ Sbjct: 186 IRVGELVKLNIDDIDFNERECIVEGKGDKQRRVYFDARTKIHLQNYINSRVDNNRALFVS 245 Query: 259 --NDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKT 315 ++N + I ++ K +NK H R+ AT + D G ++ G + Sbjct: 246 LIEPYNRLNISGVEIRMRSLGKKLNINKVHPHKFRRTLATRAIDKGMPIEQVQQLLGHQK 305 Query: 316 VDQAETYTKGADRIRLGIKNSRRIS 340 +D Y ++ + I + + I Sbjct: 306 IDTTLQYA-MVNQNNVKISHRKYIG 329 >gi|261420932|ref|YP_003254613.1| integrase [Geobacillus sp. Y412MC61] gi|319768580|ref|YP_004134080.1| integrase family protein [Geobacillus sp. Y412MC52] gi|261377390|gb|ACX80131.1| integrase family protein [Geobacillus sp. Y412MC61] gi|317113446|gb|ADU95937.1| integrase family protein [Geobacillus sp. Y412MC52] Length = 304 Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats. Identities = 47/290 (16%), Positives = 88/290 (30%), Gaps = 39/290 (13%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH----T 129 ++ EY + N+ +S+ + +Q ++ +T+ IR ++ H Sbjct: 1 MLREYEDYLRGKGYSPNTVLSYLNDVNQFLKDLNLRPDDYVTSADIRKWIQQMLHPDEGK 60 Query: 130 P---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP---WTKEDMQQFK 183 P S+ + L ++R + WAV Q YV NP + K E T+E+ + Sbjct: 61 PFAVSTINRRLNALRNFYGWAVEQGYVEQNPMNGIADLKTADEDQETIMWLTEEEFEDLL 120 Query: 184 SF------WSEG-------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230 S G + R +Y+GLR + + + + ++ G Sbjct: 121 HRMRKMLAHSRGVDPEEKYRRDRAIVYLFVYAGLRVEELSNLKLTDIDLEMKRLRIVGKG 180 Query: 231 TII-TVE----LPDGFMKLLAMTP---------IGKETFFINNDKQKMNATQFSIWFKAK 276 + TV L LA F + K + + Sbjct: 181 MKVRTVPISNILLAELQDWLAFRAEMSKKKPHVAASPYVFYSQRSPKFSVRGIQRMVEGY 240 Query: 277 ATKAGVNKSAHGVRKFSATISADA-GATAHELMATYGWKTVDQAETYTKG 325 + G + H R A ++ G + Y K Sbjct: 241 SLP-GKKLTPHMFRHTFCKWMLKATNNDIEKVRRLAGHSHIATTSRYLKD 289 >gi|225376750|ref|ZP_03753971.1| hypothetical protein ROSEINA2194_02392 [Roseburia inulinivorans DSM 16841] gi|225211376|gb|EEG93730.1| hypothetical protein ROSEINA2194_02392 [Roseburia inulinivorans DSM 16841] Length = 323 Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats. Identities = 37/280 (13%), Positives = 93/280 (33%), Gaps = 15/280 (5%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH---- 128 + + + H + + + ++++ + KITT+ +R + + Sbjct: 47 DFLDMFLTTKHLERCSDKTIRYYRCNIEKMLDTI-NIPVIKITTEMLRKYLVEYQTINNC 105 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 + S+ F W ++Y+ +P + + K E ++ + + Sbjct: 106 GKVTIDNIRRSLSTFFSWLEEEDYIIKSPMKRIHKVKTAVIVKDTIPDEKIEILRDNCN- 164 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG-----FMK 243 + R +FLL +G+R + R + + + G D + Sbjct: 165 NLRDRAMIDFLLSTGIRVGELVRLNIDDIDFSERECVVYGKGDKERKAYFDAKTKIHLLN 224 Query: 244 LLAMTPIGKETFF--INNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADA 300 + F +N ++ + + + K GV K H R+ T + + Sbjct: 225 YIESRTDNNIALFVSLNKPHSRLTESGVELRLREMGKKLGVEKVHPHKFRRTMDTRAIEK 284 Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340 G ++ G + +D Y ++ + + + + IS Sbjct: 285 GMLIEQVQKILGHEQIDTTLRYA-MVNQNNVKLSHRKYIS 323 >gi|254440821|ref|ZP_05054314.1| site-specific recombinase, phage integrase family protein [Octadecabacter antarcticus 307] gi|198250899|gb|EDY75214.1| site-specific recombinase, phage integrase family protein [Octadecabacter antarcticus 307] Length = 319 Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats. Identities = 41/244 (16%), Positives = 77/244 (31%), Gaps = 20/244 (8%) Query: 107 GDFDYRKITTKHIRSGVESRKHTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVER 163 G +IT +R+ + S + +A + L++++ ++W +E LS Sbjct: 51 GLGPISRITVSDMRAWMASERSRGVAARSLARSLSAVKSFYRWLADREGFEPTAVLSTRS 110 Query: 164 PKRKTEGIRPWTKEDMQQFKSFWS-------EGSQPRLAFEFLLYSGLRCSDSCRAGVQH 216 PK + + RP + + ++ L GLR S++ Sbjct: 111 PKFQKKLPRPLAVDAARAMIDTVQLQAGEPWIAARDMAVVTLLYGCGLRISEALGLIPAD 170 Query: 217 LQNNIFSIKTQKTGTIITVELPDGFM----KLLAMTP---IGKETFFINNDKQKMNATQF 269 + K G V + L P + F + + Sbjct: 171 VPLPATLRIIGKGGKERLVPVIPAARTAVNAYLEACPHPMDADQPIFRGSRGGPLYPRAI 230 Query: 270 SIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 I + G+ +A H +R AT +AG + G ++ + YT D Sbjct: 231 QIVMANARMQLGLPATATPHAMRHSFATHLLNAGGDLRSIQELLGHASLSTTQAYT-AVD 289 Query: 328 RIRL 331 RL Sbjct: 290 TARL 293 >gi|160886776|ref|ZP_02067779.1| hypothetical protein BACOVA_04789 [Bacteroides ovatus ATCC 8483] gi|298383599|ref|ZP_06993160.1| tyrosine type site-specific recombinase [Bacteroides sp. 1_1_14] gi|156107187|gb|EDO08932.1| hypothetical protein BACOVA_04789 [Bacteroides ovatus ATCC 8483] gi|298263203|gb|EFI06066.1| tyrosine type site-specific recombinase [Bacteroides sp. 1_1_14] Length = 381 Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats. Identities = 44/210 (20%), Positives = 81/210 (38%), Gaps = 19/210 (9%) Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVER--PKRKTEGIRPW-TKEDMQQFKSF---WSE 188 + ++ AVR++ + NP +E+ RK E +R + T E++Q E Sbjct: 165 NYYRALNGALNSAVRKKKMKANPFNELEKSEKIRKPESMRSYMTIEEVQALIDTPMPHEE 224 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT----QKTGTIITVELPDGFMKL 244 + A+ F + GLR SD + + + + + +KT I + L +K Sbjct: 225 YEIVKCAYLFSCFCGLRISDIIKLKWKDVFVDRGQYRLAVSMKKTKEPIYLPLSPEALKW 284 Query: 245 L--AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300 + ++ F +A + K A AG++K S H R AT+ Sbjct: 285 MPERGGKSSEDNVFDL-----PSANTIRMQLKPWAKAAGISKRFSYHTSRHTFATMMLTL 339 Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIR 330 GA + + G V + Y K ++ + Sbjct: 340 GADLYTVSKLLGHADVKMTQVYAKIINKKK 369 >gi|84683488|ref|ZP_01011391.1| tyrosine recombinase XerC [Maritimibacter alkaliphilus HTCC2654] gi|84668231|gb|EAQ14698.1| tyrosine recombinase XerC [Rhodobacterales bacterium HTCC2654] Length = 313 Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats. Identities = 45/246 (18%), Positives = 89/246 (36%), Gaps = 22/246 (8%) Query: 106 SGDFDYRKITTKHIRSGVESRKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE 162 G +T +R+ + S + + S + L++++ ++W ++ + LS Sbjct: 55 HGRTALASVTISDMRAWMASERAGGLSARSLARALSAVKGFYRWLSDRDGFDASTVLSTR 114 Query: 163 RPKRKTEGIRPWTKEDMQQFKSFWSE-------GSQPRLAFEFLLYSGLRCSDSCRA-GV 214 PK + RP ++E ++ S + G++ L GLR S++ G Sbjct: 115 APKFTAKLPRPVSQEAAEEVISTTAIQARDGWIGARDAAVVTLLYGCGLRISEALGLTGR 174 Query: 215 QHLQNNIFSIKTQKTGTIITVELPDGFMKL------LAMTPIGKET-FFINNDKQKMNAT 267 H ++ I K G V + L P+ +T F + + Sbjct: 175 AHPLPDVLRI-VGKGGKERLVPVLPAARDAVASYVRLCPYPVTDDTPLFYGARGKALGPR 233 Query: 268 QFSIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 ++ + G+ +A H +R AT +AG + G ++ + YT Sbjct: 234 TVQKAMESARLQLGLPATATPHAMRHSFATHLLNAGGDLRAIQELLGHASLSTTQAYT-A 292 Query: 326 ADRIRL 331 D RL Sbjct: 293 VDTQRL 298 >gi|187934545|ref|YP_001886950.1| phage integrase [Clostridium botulinum B str. Eklund 17B] gi|187722698|gb|ACD23919.1| phage integrase [Clostridium botulinum B str. Eklund 17B] Length = 335 Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats. Identities = 41/258 (15%), Positives = 92/258 (35%), Gaps = 13/258 (5%) Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR--SGVESRKHTPSSAIQ 135 Y L+ + +++ + +++ + I+T +R + + S+ Sbjct: 65 YLACKKLEGLSSKTLYNYKLFLNKL-DQYFTKPCSTISTMDLRMFLALLGKGKKASTVNG 123 Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA 195 ++T ++ F W +EY+ NP +++ K + + E++++ + E + + Sbjct: 124 YITYLKNFFGWLQNEEYIIKNPAFKLKQAKVPKVILEGYKAENLEKLREAC-ETKREKAL 182 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-----ELPDGFMKLLAMTPI 250 FE L + R S+ +Q + N SIK G+ + L Sbjct: 183 FELLDSTACRISEIQNIKLQDINWNEKSIKVTGKGSKERIVYFSTRAKLALENYLKSRND 242 Query: 251 GKETFFINN--DKQKMNATQFSIWFKAKATKAGVNKSAHG--VRKFSATISADAGATAHE 306 + FI+ + + K ++GV + H R+ AT + G Sbjct: 243 DNNSLFISKKFHNRTLGVRSLQKTIKKIKERSGVTERVHTHKFRRTQATRLLNQGMRIEG 302 Query: 307 LMATYGWKTVDQAETYTK 324 + G T + Y + Sbjct: 303 VQGILGHTTPTTTQIYAQ 320 >gi|327439442|dbj|BAK15807.1| integrase [Solibacillus silvestris StLB046] Length = 363 Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats. Identities = 56/342 (16%), Positives = 112/342 (32%), Gaps = 39/342 (11%) Query: 11 VTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70 V K++ R Y+ + +G++++ F + L + + E ++ + Sbjct: 3 VYKDKER--NTYYFITRINGKQVKRRG-----FKTKKEALLAEAQLENEGNV---EQIIS 52 Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---K 127 +++ EY K + + + I + I + K Sbjct: 53 FEFIADEYMKWYKTRRKESSFKKLRSVITVHLKPYFKKKALHTIRQRDIIKFHDHLIETK 112 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI-RPWTKEDMQQFKSFW 186 + ++A + + LF +A++ EY NP V + K WT ++ + F Sbjct: 113 LSAATAKKIHQILSALFNFAIKNEYTKDNPARVVGNIEMKENKHMNYWTLDEFKAFIKQV 172 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIF---------SIKTQKT-GTIIT 234 F L YSG+R + + NN I T KT + Sbjct: 173 D-NIVYHTLFMTLYYSGMRTGELVALTWSDIDFTNNTINVNKTLAGTKITTTKTESSTRI 231 Query: 235 VELPDGFMKLLAMTPIG---------KETFFIN-NDKQKMNATQFSIWFKAKATKAGVNK 284 + +P+ M LL + K + + + M+ T ++ + V + Sbjct: 232 ITMPNHIMHLLGKLKLHQASKYGFEPKMNYCVFGKFTRYMSKTALDNNYRKYIELSDVKR 291 Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324 H R A+ + G + A G V +TY+ Sbjct: 292 IRLHDFRHSHASYLINKGVIISVVAARLGHANVSMTLDTYSH 333 >gi|323669665|emb|CBJ94787.1| shufflon-specific DNA recombinase [Salmonella bongori] Length = 383 Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats. Identities = 42/279 (15%), Positives = 91/279 (32%), Gaps = 23/279 (8%) Query: 62 NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121 R K +L + +Y + + F + +ITT I S Sbjct: 3 RPQRIKKMSLSKALDKYYATVSVHKRGH--QQEFYRVRVIQRHPLAEKMMDEITTVDIAS 60 Query: 122 GVESRKHTPSSAIQF----------LTSMRVLFKWA-VRQEYVAINPCLSVERPKRKTEG 170 + R ++ L + L+ A V NP V +PK Sbjct: 61 YRDDRLSQVNTRTGRCISGNTVRLELALLSSLYNLASVEWGTCRTNPVEMVRKPKISGGR 120 Query: 171 IRPWTKEDMQQFKSFWSEGSQP-RLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQ 227 R T ++ ++ ++ E + F + + +R + +H+ + + Sbjct: 121 DRRLTSQEERRLSRYFQEQNPALHAIFHLAIETAMRQGEILSLRWEHIDLQHGVAHLPMT 180 Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSA 286 K G+ V L LL T ++ + +++ F ++ + + + Sbjct: 181 KNGSSRDVPLSRKARHLL-----QGMTVALSGNVFHYSSSGFKSAWRVALQRLNIADLHF 235 Query: 287 HGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTK 324 H +R + + + G E+ A G ++++ YT Sbjct: 236 HDLRHEAISRLFELGTLNVMEVAAISGHRSLNMLRRYTH 274 >gi|148272560|ref|YP_001222121.1| integrase/recombinase [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147830490|emb|CAN01425.1| integrase/recombinase [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 298 Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats. Identities = 37/280 (13%), Positives = 86/280 (30%), Gaps = 32/280 (11%) Query: 75 ISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR------K 127 I+ + S A ++ ++ + + +G + + + Sbjct: 4 IAAFGTSMDRERGSAAHTVRAYSADLRDLAAHAGRQGVTTSAALDLEVLRDWLWRGSQAR 63 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186 P++ + ++R W +R V +P + ++ P+ + R +E M + Sbjct: 64 LAPATLARRSAAVRGFGAWLLRTGRVEADPAVRLKAPRAGSHLPRVLAREQMSALLARLA 123 Query: 187 -------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---- 235 + E L S LR S+ + + + +++ G V Sbjct: 124 ARAAEDDPAALRDLAVIELLYASALRVSELTGLELGDVDASRLTVRVVGKGDRERVVPFG 183 Query: 236 -ELPDGFMKLLAM------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--- 285 + +A +P F+ ++ + + A + S Sbjct: 184 VPAAEALDAYVARGRPGLVSPRTGTALFLGARGGRLGSRAVYGLV--ASLLADIPGSGPQ 241 Query: 286 -AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R +AT D GA + G ++ + YT Sbjct: 242 GPHALRHTAATHLLDGGADLRTVQEMLGHASLGTTQIYTH 281 >gi|114567775|ref|YP_754929.1| phage integrase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114338710|gb|ABI69558.1| phage integrase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 392 Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats. Identities = 54/344 (15%), Positives = 109/344 (31%), Gaps = 49/344 (14%) Query: 26 RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKK-PTTLKWLISEYRKSAHW 84 R G R+ + + Y+ + G Y + L I+ Y Sbjct: 24 RTGERRQHKKRFTGTKREANKYLQRILGEIESGSYSDLGNITIKQYLDKWINAYCTP--- 80 Query: 85 GSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHT---------PSSAI 134 +L + S+ S + II G + HI + P++ + Sbjct: 81 TNLQPKTIRSYTSTINNHIIPHLGRHKLNNLKAAHIADYYALMSKSRTEGGAGLSPTTVL 140 Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194 + K AV Q+Y+ NP V+ P++ I+ + E + + +SE Q L Sbjct: 141 YHHRILHQALKHAVNQDYLKQNPVAKVQPPRKNRPDIKVLSVEQARYLIARYSE-EQIYL 199 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQ---------------NNIFSIKTQKT-GTIITVELP 238 L +G+R ++ Q++ N +K KT + ++ +P Sbjct: 200 PVFLALMTGMREAEIAALRWQNVDFDNRTLSVTNALQRQENRLELKEPKTKKSRRSIPVP 259 Query: 239 DGFMKLLAMTPIGKETF--------------FINNDKQKMNATQFSI-WFKAKATKAGVN 283 + + +L ++ + D + + W K A+ + Sbjct: 260 EQVVVVLKKEKERQDCYREILGEGYDCRGFVCAWEDGKPYDPEWIGKQWAKLVASDDKIP 319 Query: 284 --KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324 H +R ATI + G +++ + Y+ Sbjct: 320 NGVRFHDLRHTHATILLSQNINLKVIQDRLGHESIATTGDIYSH 363 >gi|19704172|ref|NP_603734.1| integrase/recombinase [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|19714390|gb|AAL95033.1| Integrase/recombinase [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 328 Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats. Identities = 42/295 (14%), Positives = 96/295 (32%), Gaps = 44/295 (14%) Query: 88 AVNSRISFESYFDQIIR--KSGDFDY---------RKITTKHIRSGV----ESRKHTPSS 132 + + + + + G+ D+ + I + + + + E RK +S Sbjct: 33 SEKTVKDYMFHLKDFLHFVYDGENDFSISEVIPLMQDIEKEDVEAYIVHLFEDRKLKKTS 92 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW--TKEDMQQFKSFWSEGS 190 L++++ L+K NP ++ K + +D+++ + S Sbjct: 93 VNTILSALKSLYKELESNGL--KNPVKYIKLFKVNRNIENILKVSIDDIRKIIGLYKIDS 150 Query: 191 QPR----LAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVELPDGFM 242 + + L Y+G+R + +H F + K+G + + + Sbjct: 151 EKKYRNITILYTLFYTGMRSKELLTLQFKHYLKREDEYFFKLVQTKSGKDVYKPIHKSLV 210 Query: 243 K-------------LLAMTPIGKETFFINN--DKQKMNATQFSIWFKAKATKAGVNKSAH 287 K L + + ++ F + D ++ + + G + S H Sbjct: 211 KKLEEYKEYLMSMYSLDLKDLDEKYIFSTSILDNSPLSYRSLNAIIQDMGKLIGKDISPH 270 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342 +R AT + +GA E+ G E Y R L K ++ + Sbjct: 271 NIRHAIATELSLSGADILEIRDFLGHSDTKVTEVYINA--RSILEKKVLEKLPEI 323 >gi|326344401|gb|EGD68154.1| Shufflon-specific DNA recombinase [Escherichia coli O157:H7 str. 1125] Length = 374 Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats. Identities = 46/274 (16%), Positives = 98/274 (35%), Gaps = 19/274 (6%) Query: 65 RKKPTTLKWLISEYRKSAHWGS---LAVNSRIS---FESYFDQIIRKSGDFDYRKITTKH 118 + + T+ + +Y K+ L R++ ++ + D + Sbjct: 6 KIRKMTISRALDKYLKTVSIHKKGHLQEFYRVNVIKRHPIAERYMDDITTVDIANYRDQR 65 Query: 119 IRSG--VESRKHTPSSAIQFLTSMRVLFKWA-VRQEYVAINPCLSVERPKRKTEGIRPWT 175 + R+ T ++ L + LF A V +NP V +PK + R T Sbjct: 66 LAQINPRTGRQITGNTVRLELALLSSLFNIARVEWGTCRMNPVELVRKPKISSGRDRRLT 125 Query: 176 KEDMQQFKSFWSEGSQP-RLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQKTGTI 232 + ++ ++ E +Q + F L + +R + +H+ + + T K G Sbjct: 126 SGEERRLSRYFKEKNQALYVIFHLALETAMRQGEILSLRWEHVDLQHGVAHLPTTKNGAP 185 Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRK 291 V L L M PI +N + ++ F ++ + + N H +R Sbjct: 186 RDVPLSRKARSYLQMLPIQ-----LNGNIFSYTSSGFKSAWRTALQELKIENLHFHDLRH 240 Query: 292 FSATISADAG-ATAHELMATYGWKTVDQAETYTK 324 + + + G E+ A G ++++ + YT Sbjct: 241 EAISRFFELGTLNVIEVAAISGHRSLNMLKRYTH 274 >gi|255975601|ref|ZP_05426187.1| phage integrase [Enterococcus faecalis T2] gi|307277808|ref|ZP_07558892.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX0860] gi|255968473|gb|EET99095.1| phage integrase [Enterococcus faecalis T2] gi|306505205|gb|EFM74391.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX0860] Length = 392 Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats. Identities = 63/392 (16%), Positives = 125/392 (31%), Gaps = 72/392 (18%) Query: 1 MTPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY 60 M R +T GKI +YF+ R R + + AY+ K++ Sbjct: 1 MENMSRFKKHITAT----GKITWYFQ--DFRTTRRGFNSKREAQLAYLEMEKQHRNKQKR 54 Query: 61 INS-PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119 + S + + KW EY +S + V + E + R G ++++ + Sbjct: 55 LASNDKFSVVSQKWF--EYYRSLN--EQKVATYDKREEQVKILNRWIGGKKLSSLSSEEL 110 Query: 120 RSGVESRKHT----------PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK-- 167 + + K +S + + ++F + ++ + NP V+ PK + Sbjct: 111 QKFLFILKEKGIDGVNVGYAKNSLQSLVQVLNMVFNYCKKKNLINENPMKFVKMPKYQLS 170 Query: 168 ---------TEGIRPWTKEDMQQFKSF--WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH 216 + + T ++++ F ++ E + F L Y+G R S++ Q Sbjct: 171 LKDLKESVNSLEDKFLTVDELRAFLNYGIVYEELPMSVLFHVLFYTGCRVSEALALQPQD 230 Query: 217 LQNNI-----------------FSIKTQKT-GTIITVELPD-------GFMKLLAMTPIG 251 + F I+T KT + V + + +L T Sbjct: 231 IDFERNEILFYKQTAVKGKSKDFRIETTKTVSSARRVPVTPLVMEKLQELIDVLNKTKRN 290 Query: 252 -----KETFFI-----NNDKQKMNATQFSIWFKAKATKAGVNKSAHG--VRKFSATISAD 299 ET+ + K + G+NK H R A++ A+ Sbjct: 291 SNFVVDETYLFVYLDPGKRGVPYRREYVNDHVKRCVERCGINKDFHTHLARHTMASLVAE 350 Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRL 331 + L G ++ Y +L Sbjct: 351 Y-CSWDVLKDRLGHTDSTTSKIYRHLTSTEKL 381 >gi|224282694|ref|ZP_03646016.1| site-specific tyrosine recombinase XerC [Bifidobacterium bifidum NCIMB 41171] Length = 334 Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats. Identities = 51/300 (17%), Positives = 100/300 (33%), Gaps = 60/300 (20%) Query: 85 GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGV--ESRKHTPSSAIQFLTS 139 L+ N+ ++ + + + G D R++TT +R + E+R H SS + + S Sbjct: 18 RGLSGNTVKAYGTDVRECLHALASRGIADLRQVTTDDLRGWMAFETRDHARSSMARKVVS 77 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ------------------ 181 +R F WA + +P + PK T+ ++ Sbjct: 78 VRSFFAWAHEHGRIEADPAAVLMTPKLPDTLPSVLTEAQAERLMDRVDDDASLHAASSQR 137 Query: 182 FKSFWSE--------------------GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI 221 +++ E + E L +G+R ++ + + + Sbjct: 138 YETRHDEMPRLDSAHRGEGMSQRDEVVALRDAAMLELLYATGIRVAELVGLDIGDVDWSH 197 Query: 222 FSIK-TQKTGTIITVELPDGFMKLLA---------------MTPIGKETFFINNDKQKMN 265 +I+ T K V D K LA + F+ ++++ Sbjct: 198 RTIRVTGKGSKQRVVPFGDPAEKALAGWKEHGRPLILRRAGAGTLDTAALFLGMRGRRID 257 Query: 266 ATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 A ++GV + S H +R +AT D GA E+ G ++ + YT Sbjct: 258 QRIVRDVVHRAARESGVPDISPHSLRHSAATHMLDGGADLREVQEMLGHSSLRTTQRYTH 317 >gi|254360492|ref|ZP_04976641.1| possible integrase/recombinase [Mannheimia haemolytica PHL213] gi|153091032|gb|EDN73037.1| possible integrase/recombinase [Mannheimia haemolytica PHL213] Length = 346 Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats. Identities = 50/252 (19%), Positives = 83/252 (32%), Gaps = 18/252 (7%) Query: 88 AVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFK 145 A N+R S + + G+ KI KHI ++ RK TP+ A + ++ Sbjct: 88 AKNTRQSNLQAIHWLCKFFGNPPAPLEKIEPKHISQYLQWRKDTPAVANIEVGLFNTIWN 147 Query: 146 WAVRQEYVA-INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGL 204 A Y A +P V++ K + + + F E E G Sbjct: 148 MAREWGYTALPSPSQGVKKFPTKYREVYV-EDYILDKIYEFADERMAD--IIETAYLLGQ 204 Query: 205 RCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA-MTPIGKETFFINNDKQK 263 R D C H+ + I I QKTG + E+ ++L + F N +K Sbjct: 205 RPIDICNIHRSHIYDGILHITQQKTGKKVRFEISGRLKEILDKRLGYESDWIFTNKWGKK 264 Query: 264 MNATQFSIWFKAKATKA---------GVNK-SAHGVRKFSATISADAGATAHELMATYGW 313 + FK +A + K +R +AT + T + G Sbjct: 265 LKRRSLGDHFKEIRERAMKAYPELADEIAKVQMRDMRAKAATDISLM-TTDEQAQKQLGH 323 Query: 314 KTVDQAETYTKG 325 + Y + Sbjct: 324 TSKRMTHHYIRK 335 >gi|291563477|emb|CBL42293.1| Site-specific recombinase XerD [butyrate-producing bacterium SS3/4] Length = 350 Score = 100 bits (249), Expect = 4e-19, Method: Composition-based stats. Identities = 42/285 (14%), Positives = 90/285 (31%), Gaps = 40/285 (14%) Query: 97 SYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA-----------IQFLTSMRVLFK 145 FD D K+T + ++ K PS ++ ++S+R + Sbjct: 65 RTFDNPAHTLTPGDLEKLTVSDLEEYIDYLKCHPSDTCEDVVNTERGLMRKVSSLRSFYS 124 Query: 146 WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS--------------- 190 + R E + NP V PK + I +++ + EG Sbjct: 125 YFFRNELIEKNPAALVRMPKLHEKEIIRLEIDEVAKLLDEVEEGDKLTEKQKLYHERTKV 184 Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGF-------- 241 + LL +G+R S+ + + + + +K G + D Sbjct: 185 RDLAMMSLLLGTGIRVSECVGLNINDIDLDTCGARVYRKGGKESVIYFSDEVRDVLEDYL 244 Query: 242 --MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATIS 297 +++ P ++ F++ ++++N K A + H +R T Sbjct: 245 DEREMIDAVPGNEDALFLSMQRKRINVRSVENLVKKYAKLVTPLKKITPHKLRSTYGTSL 304 Query: 298 ADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISS 341 + + + G V+ + Y + R +N R+ Sbjct: 305 YRETGDIYLVASVLGHNDVNTTRKHYAAQEEERRRSARNVVRLRE 349 >gi|218884315|ref|YP_002428697.1| phage integrase family protein [Desulfurococcus kamchatkensis 1221n] gi|218765931|gb|ACL11330.1| phage integrase family protein [Desulfurococcus kamchatkensis 1221n] Length = 321 Score = 100 bits (249), Expect = 4e-19, Method: Composition-based stats. Identities = 42/277 (15%), Positives = 97/277 (35%), Gaps = 22/277 (7%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR------K 127 ++ E++ S + + ++ S + GD R +T + I + R Sbjct: 9 IVEEFKASLEASGASEETVKAYLSAIKDFLGFIGDKPLRDVTLRDILAWRNDRLRNGFPN 68 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 S ++L ++ + R E++ +N V ++ I + E++++ + Sbjct: 69 RKISDKEKWLVTLHYYTLFLKRFFEWLGVNIV--VTPVRKPHASINVLSDEEVEKLYNVA 126 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDGFMKL 244 +L L+ +GLR + V+ + + + + + K G V + K+ Sbjct: 127 RTPL-DKLVLRLLVDTGLRSRELLGLRVEDVNFHSRVIKVTSAKYGKERYVVATEETFKM 185 Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAG 301 L + + + K AT+AG+ H +R AT + G Sbjct: 186 LDAWIRLNG-LMPGDRLFNLTYSGLYKKLKRLATRAGIAPERVRPHVLRHTFATRALRRG 244 Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRR 338 + L G + + Y L +++ ++ Sbjct: 245 LSLPALQRLLGHSDIKTTQIYLH------LSVEDLKK 275 >gi|148912793|ref|YP_001293372.1| Integrase [Pseudomonas phage F10] Length = 349 Score = 100 bits (249), Expect = 4e-19, Method: Composition-based stats. Identities = 54/318 (16%), Positives = 100/318 (31%), Gaps = 43/318 (13%) Query: 7 LPPFVTKERTR---HGKII--YYF--RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKRE 59 LPP + K RTR GK+ YY+ R GRR +P + + + Sbjct: 11 LPPRMIK-RTRTMKSGKVWVGYYYDGRDAEGRRKEIPLGTDLDEAREKWA--------KL 61 Query: 60 YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119 + T+ L+ + + + A ++ + Q++ + IT I Sbjct: 62 ERKAVPPTTRTVGDLLRRFERDV-VPTKAPKTQKEYSKMIRQLLGAFDEAPVEDITPSTI 120 Query: 120 RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVA-INPCLSVERPKRKTEGIRPWTKED 178 ++R A + +T + + A + NPC V++ K + + T E Sbjct: 121 AQYRDARTAKVR-ANREITLLSFAYNMAREWGITSMENPCRGVKKNKEQPRDVYV-TDEV 178 Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238 + + R+ + +G R +D + + + + KT + + L Sbjct: 179 WKALYEKAPDDL--RVTMDLAYLTGQRPADVRKLRKSDVSGDYLLVGQNKTSRKLRIRLR 236 Query: 239 DG------FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKF 292 L+ N Q M F RK Sbjct: 237 RADGQMTQLGHLVESIASDSPALVTNEKGQPMTEKMLRTRFD-------------TARKA 283 Query: 293 SATISADAG--ATAHELM 308 +A + AG A E+M Sbjct: 284 AADEAIKAGDQDLAREIM 301 >gi|15856|emb|CAA49810.1| integrase [Mycobacterium phage D29] gi|2358241|gb|AAB69102.1| integrase [Mycobacterium phage D29] Length = 333 Score = 100 bits (249), Expect = 4e-19, Method: Composition-based stats. Identities = 51/299 (17%), Positives = 101/299 (33%), Gaps = 40/299 (13%) Query: 53 GSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDY 111 K+ ++ + T KW+ LA ++ + ++ +I GD Sbjct: 23 AEREKKAAASAITVEEYTKKWIAER--------DLAGGTKDLYSTHARKRIYPVLGDTPV 74 Query: 112 RKITTKHIRSGVESR-KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170 ++T +R+ K P++ +R + AV + V+ NPC +E+ Sbjct: 75 AEMTPALVRAWWAGMGKQYPTARRHAYNVLRAVMNTAVEDKLVSENPCR-IEQKAPAERD 133 Query: 171 IRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQK 228 + T E++ R+A L ++ LR + + + ++ ++ Sbjct: 134 VEALTPEELDVVAG--EVFEHYRVAVYILAWTSLRFGELIEIRRKDIVDDGETMKLRVRR 191 Query: 229 TGTII----------------TVELPDGFMKLLA--------MTPIGKETFFINNDKQKM 264 + V +P ++ M + Q++ Sbjct: 192 GAARVGEKIVVGNTKTVRSKRPVTVPPHVAAMIREHMADRTKMNKGPEALLVTTTRGQRL 251 Query: 265 NATQFSIWFKA-KATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 + + F+ K A + H +R AT++A AGAT ELM G T A Y Sbjct: 252 SKSAFTRSLKKGYAKIGRPDLRIHDLRAVGATLAAQAGATTKELMVRLGHTTPRMAMKY 310 >gi|30263996|ref|NP_846373.1| prophage LambdaBa02, site-specific recombinase phage integrase family protein protein [Bacillus anthracis str. Ames] gi|47778252|ref|YP_020778.2| prophage lambdaba02, site-specific recombinase phage integrase family protein protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49186834|ref|YP_030086.1| prophage LambdaBa02, site-specific recombinase phage integrase family protein protein [Bacillus anthracis str. Sterne] gi|65321318|ref|ZP_00394277.1| COG0582: Integrase [Bacillus anthracis str. A2012] gi|165872111|ref|ZP_02216750.1| prophage LambdaBa02, site-specific recombinase, phage integrase family [Bacillus anthracis str. A0488] gi|167633704|ref|ZP_02392028.1| prophage LambdaBa02, site-specific recombinase, phage integrase family [Bacillus anthracis str. A0442] gi|167641018|ref|ZP_02399275.1| prophage LambdaBa02, site-specific recombinase, phage integrase family [Bacillus anthracis str. A0193] gi|170688722|ref|ZP_02879926.1| prophage LambdaBa02, site-specific recombinase, phage integrase family [Bacillus anthracis str. A0465] gi|170705756|ref|ZP_02896219.1| prophage LambdaBa02, site-specific recombinase, phage integrase family [Bacillus anthracis str. A0389] gi|190565741|ref|ZP_03018660.1| prophage LambdaBa02, site-specific recombinase, phage integrase family [Bacillus anthracis Tsiankovskii-I] gi|227816697|ref|YP_002816706.1| prophage LambdaBa02, site-specific recombinase, phage integrase family [Bacillus anthracis str. CDC 684] gi|229604530|ref|YP_002868225.1| prophage LambdaBa02, site-specific recombinase, phage integrase family [Bacillus anthracis str. A0248] gi|254683690|ref|ZP_05147550.1| prophage LambdaBa02, site-specific recombinase, phage integrase family protein [Bacillus anthracis str. CNEVA-9066] gi|254721526|ref|ZP_05183315.1| prophage LambdaBa02, site-specific recombinase, phage integrase family protein [Bacillus anthracis str. A1055] gi|254736035|ref|ZP_05193741.1| prophage LambdaBa02, site-specific recombinase, phage integrase family protein [Bacillus anthracis str. Western North America USA6153] gi|254743926|ref|ZP_05201609.1| prophage LambdaBa02, site-specific recombinase, phage integrase family protein [Bacillus anthracis str. Kruger B] gi|254754295|ref|ZP_05206330.1| prophage LambdaBa02, site-specific recombinase, phage integrase family protein [Bacillus anthracis str. Vollum] gi|254758014|ref|ZP_05210041.1| prophage LambdaBa02, site-specific recombinase, phage integrase family protein [Bacillus anthracis str. Australia 94] gi|30258640|gb|AAP27859.1| prophage LambdaBa02, site-specific recombinase, phage integrase family [Bacillus anthracis str. Ames] gi|47551957|gb|AAT33253.2| prophage LambdaBa02, site-specific recombinase, phage integrase family [Bacillus anthracis str. 'Ames Ancestor'] gi|49180761|gb|AAT56137.1| prophage LambdaBa02, site-specific recombinase, phage integrase family [Bacillus anthracis str. Sterne] gi|164712058|gb|EDR17596.1| prophage LambdaBa02, site-specific recombinase, phage integrase family [Bacillus anthracis str. A0488] gi|167511068|gb|EDR86457.1| prophage LambdaBa02, site-specific recombinase, phage integrase family [Bacillus anthracis str. A0193] gi|167531110|gb|EDR93797.1| prophage LambdaBa02, site-specific recombinase, phage integrase family [Bacillus anthracis str. A0442] gi|170129296|gb|EDS98160.1| prophage LambdaBa02, site-specific recombinase, phage integrase family [Bacillus anthracis str. A0389] gi|170667238|gb|EDT17997.1| prophage LambdaBa02, site-specific recombinase, phage integrase family [Bacillus anthracis str. A0465] gi|190562660|gb|EDV16626.1| prophage LambdaBa02, site-specific recombinase, phage integrase family [Bacillus anthracis Tsiankovskii-I] gi|227005467|gb|ACP15210.1| prophage LambdaBa02, site-specific recombinase, phage integrase family [Bacillus anthracis str. CDC 684] gi|229268938|gb|ACQ50575.1| prophage LambdaBa02, site-specific recombinase, phage integrase family [Bacillus anthracis str. A0248] Length = 376 Score = 100 bits (249), Expect = 4e-19, Method: Composition-based stats. Identities = 44/293 (15%), Positives = 96/293 (32%), Gaps = 28/293 (9%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHT 129 L+ + + S ++ ++ +++ + G+ I + + + Sbjct: 63 FSQLVEIWTQEKE-SSCRPSTLYQYKRILRSRVMPEFGEKRLSDIKPLSVHNFHQKLLKE 121 Query: 130 PSSAIQFLTS---MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + + ++ + V E + NP +RPK K + WT E+ +F + Sbjct: 122 GLTTKYISSVDVMLKQILDKGVELEMINSNPAKKAKRPKVKKKAQASWTVEEAMKFMEYA 181 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT------------ 234 +AF L++G+R + + + I Q+T T++ Sbjct: 182 KIQGSYYIAFVLALHTGMRIGEVLALQWKDINFESKVIHVQRTLTLVDGKYELGETKTEA 241 Query: 235 ----VELPDGFMKLLAMTPIGK-----ETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284 + + M+ L K + +K+ ++ KA V Sbjct: 242 SNRMIPMTQELMRELLEYQSHKKDNSFDLLICTRNKKIVHPYTIRYQMKALCEAIDVPYI 301 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNS 336 H +R+ TI D+GA A + G V YT + ++ + Sbjct: 302 RFHDIRRTFTTILIDSGANAKVVSKLLGHTNVSTTLNIYTDVYEERQIEVTEM 354 >gi|218889533|ref|YP_002438397.1| Integrase [Pseudomonas aeruginosa LESB58] gi|218769756|emb|CAW25516.1| Integrase [Pseudomonas aeruginosa LESB58] Length = 349 Score = 100 bits (249), Expect = 4e-19, Method: Composition-based stats. Identities = 54/318 (16%), Positives = 100/318 (31%), Gaps = 43/318 (13%) Query: 7 LPPFVTKERTR---HGKII--YYF--RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKRE 59 LPP + K RTR GK+ YY+ R GRR +P + + + Sbjct: 11 LPPRMIK-RTRTMKSGKVWVGYYYDGRDAEGRRKEIPLGTDLDEAREKWA--------KL 61 Query: 60 YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119 + T+ L+ + + + A ++ + Q++ + IT I Sbjct: 62 ERKAVPPTTRTVGDLLRRFERDV-VPTKAPKTQKEYSKMIRQLLGAFDEAPVEDITPSTI 120 Query: 120 RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVA-INPCLSVERPKRKTEGIRPWTKED 178 ++R A + +T + + A + NPC V++ K + + T E Sbjct: 121 AQYRDARTAKVR-ANREITLLSFAYNMAREWGITSMENPCRGVKKNKEQPRDVYV-TDEV 178 Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238 + + R+ + +G R +D + + + + KT + + L Sbjct: 179 WKALYEKAPDDL--RVTMDLAYLTGQRPADVRKLRKNDVSGDYLLVGQNKTSRKLRIRLR 236 Query: 239 DG------FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKF 292 L+ N Q M F RK Sbjct: 237 RADGQMTQLGHLVESIASDSPALVTNEKGQPMTEKMLRTRFD-------------TARKA 283 Query: 293 SATISADAG--ATAHELM 308 +A + AG A E+M Sbjct: 284 AADEAIKAGDQDLAREIM 301 >gi|116254396|ref|YP_770234.1| shufflon-specific DNA recombinase [Rhizobium leguminosarum bv. viciae 3841] gi|115259044|emb|CAK10154.1| putative shufflon-specific DNA recombinase [Rhizobium leguminosarum bv. viciae 3841] Length = 317 Score = 100 bits (249), Expect = 4e-19, Method: Composition-based stats. Identities = 48/325 (14%), Positives = 109/325 (33%), Gaps = 35/325 (10%) Query: 32 RIRLPYPHESTFIPAYMSALTGSTPKREYINSPR-KKPTTLKWLISEYRKSAHWGSLAVN 90 + R + L + + + TTL L+ Y+ ++ Sbjct: 2 KPRAKSFDSKAEAEKWARELESQVDRFGAAPDTKILETTTLGDLLKRYK-----IEVSP- 55 Query: 91 SRISFESYFDQI----IRKSGDFDYRKITTKHIRSGVESRKHT--PSSAIQFLTSMRVLF 144 ++ +I + ++ + S + R + PS+A++ + + + Sbjct: 56 TKRGCVQEIQRIDVLERHEIAHRTLVGLSQPDVASFRDERLSSVAPSTAVREMAILSHVI 115 Query: 145 KWAVRQEY---VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP--RLAFEFL 199 + A+ +++ ++ N V RP + E R ++ Q+ G P R Sbjct: 116 EVAM-RDWGFPLSRNVVKLVRRPVIRNERKRRLEGDEEQRLLDGCDGGKIPFMRTLLIVA 174 Query: 200 LYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELP----DGFMKLLAMTPIGKE 253 + +G+R S+ + + +++ K G+ V + D + P+ + Sbjct: 175 IETGMRRSEILGLKWTDISHNRRVITLEMTKNGSGREVPMTQRAFDALSRWKENAPVEES 234 Query: 254 TFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYG 312 F F ++ +A + H +R + + G E+ + G Sbjct: 235 MVFPIAPG------SFEQVWRRLLKRANIVGLRFHDLRHEGVSRLFERGLNVIEVSSISG 288 Query: 313 WKTVDQAETYTK-GAD--RIRLGIK 334 K + + YT AD RLG+ Sbjct: 289 HKELRMLKRYTHLSADDLVARLGMS 313 >gi|332042847|gb|EGI79046.1| integrase family protein [Lacinutrix algicola 5H-3-7-4] Length = 279 Score = 100 bits (249), Expect = 4e-19, Method: Composition-based stats. Identities = 39/256 (15%), Positives = 85/256 (33%), Gaps = 17/256 (6%) Query: 85 GSLAVNSRISFESYFDQIIRKSG-DFDYRKITTKHIRSGVESRKHTPSSA----IQFLTS 139 + NS ++ + G D + K + + + H + A Q + Sbjct: 17 KRYSENSINTYLGLIKSFHKYVGFQIDLISLENKQLLAIIIQIVHDKNLAYTTHKQLCAA 76 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFL 199 +++ ++ ++ + +P RP + + ++++ + + + + Sbjct: 77 LKLFYREMYSRD-IDFSPVYPTRRP---SPLPNIISTKEVKAISESHN-NIKHKAMLTAI 131 Query: 200 LYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDGFMKLLA---MTPIGKET 254 GLR + ++ + N I++ K + LP+ L + K Sbjct: 132 YALGLRSGELINIKIEDINSDRNQIFIRSGKGRKDRVLPLPNSLRVLFREYYLQYRPKNY 191 Query: 255 FFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYG 312 F + K FK KAG+NK + H +R AT D G + G Sbjct: 192 LFCGRNGDKYAPESLRKVFKMAVFKAGINKQITLHSLRHAYATHLMDRGTDVRIIKELLG 251 Query: 313 WKTVDQAETYTKGADR 328 ++ YT + Sbjct: 252 HSSIKTTLIYTHVTQK 267 >gi|325956667|ref|YP_004292079.1| integrase-recombinase [Lactobacillus acidophilus 30SC] gi|325333232|gb|ADZ07140.1| integrase-recombinase [Lactobacillus acidophilus 30SC] gi|327183490|gb|AEA31937.1| integrase-recombinase [Lactobacillus amylovorus GRL 1118] Length = 302 Score = 100 bits (249), Expect = 4e-19, Method: Composition-based stats. Identities = 40/275 (14%), Positives = 100/275 (36%), Gaps = 25/275 (9%) Query: 75 ISEYRKSAHWGSL-AVNSRISFESYF----DQIIRKSGDFDYRKITTKHIRSGVE---SR 126 + ++ + + + S+ + G ++K+T + I+ ++ R Sbjct: 8 LDQFISYLQFERYYSKKTISSYATDLHEAKKFWQENGGFAGWKKVTERDIQIYIQHLGDR 67 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 K SS + ++S+ +++ R+ V I+P +V + + + + + + +++Q Sbjct: 68 KLARSSQARQMSSLHSFYRFLTRRRIVKIDPTQTVVIRRGEKKLPQFFYQPEIKQVFDSL 127 Query: 187 ----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-ITVELPDGF 241 + FE +G+R S+ + + ++ +I G V D Sbjct: 128 QGDKPLTVRNLALFELFYATGMRVSEVSGLTLPQIDLDLKTILVHGKGNKDRYVAFDDRT 187 Query: 242 MKLL-----AMTPI-----GKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGV 289 L P ++ F++N + ++ + +AG++ H + Sbjct: 188 KNSLLNYLNNARPRLLKDKDEQHVFLSNQGKAISDRGIQYVMQKTFNQAGISGKVHPHEL 247 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 R AT + GA + G ++ + YT Sbjct: 248 RHTFATAMLNNGADMRSVQELLGHSSLSATQIYTH 282 >gi|302039282|ref|YP_003799604.1| putative phage integrase [Candidatus Nitrospira defluvii] gi|300607346|emb|CBK43679.1| putative Phage integrase (modular protein) [Candidatus Nitrospira defluvii] Length = 410 Score = 100 bits (249), Expect = 4e-19, Method: Composition-based stats. Identities = 59/339 (17%), Positives = 112/339 (33%), Gaps = 40/339 (11%) Query: 22 IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKS 81 +YY KG R L Y A+ + + E R +TL+ + Y Sbjct: 18 LYYRWKGQRYRPLLGYDLSPDEAEELAIAMISTIHRGEQAPPSRSPESTLRTFLPIY--- 74 Query: 82 AHWGSLAVNSRISFES---YFD-QIIRKSGDFDYRKITTKHIRSGVESR---KHTPSSAI 134 W +L V +R+ + ++ + GD +T + + + +R K +P + Sbjct: 75 --WQALRVKNRVDLRRPEIILETHLLPRFGDRLLDSLTPEDGQEYIAARLDAKASPGTIQ 132 Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194 + + + AV E + N V+ P+ R T E++ ++ ++ ++ Sbjct: 133 KEWGVLMRILNLAVDFEKLDRNRLKRVQLPEVARRE-RVATNEELSAIQAEAAKRKPYKI 191 Query: 195 ------------AFEFLLYSGLRCSDSCRAGVQHL---QNNIFSI----KTQKTGTIITV 235 + L++GLR + L + + I +T+ GT + Sbjct: 192 LGRVYDPAEFWRIVQVALHTGLREAKILEIDRSWLRQRDDGWWLILPPSRTRLKGTPREL 251 Query: 236 EL-PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFS 293 L + L + F N +A F + A V + H +R Sbjct: 252 PLNHLVYRALRPEVAAIEGPIFAN-----WSADAFGHQWHRTCKAAKVQDLHFHDLRHTF 306 Query: 294 ATISADAGATAHELMATYGWKTVD-QAETYTKGADRIRL 331 T + G + A G T Y+ G L Sbjct: 307 TTRLQNLGVSLEIRSALLGHSTKAIMTSQYSHGGQGWNL 345 >gi|296451879|ref|ZP_06893596.1| conserved hypothetical protein [Clostridium difficile NAP08] gi|296879726|ref|ZP_06903701.1| conserved hypothetical protein [Clostridium difficile NAP07] gi|296259261|gb|EFH06139.1| conserved hypothetical protein [Clostridium difficile NAP08] gi|296429315|gb|EFH15187.1| conserved hypothetical protein [Clostridium difficile NAP07] Length = 424 Score = 100 bits (249), Expect = 4e-19, Method: Composition-based stats. Identities = 47/307 (15%), Positives = 93/307 (30%), Gaps = 53/307 (17%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSG---VES 125 TL ++ + + +A ++R+ +ES + I G + I IR ++ Sbjct: 67 TLDEWYQKWLEIYKYKVIAPSTRVQYESIYKKHIQTDFGHMKLKDIQPLQIRGKLVNLDK 126 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + + + + +F AV NP +++ + + + R + E+ F Sbjct: 127 KGFGYETQNKVRILLLDMFNKAVADNVAMKNPVRNIKVVRDEEKEPRVLSTEEQSAFFDT 186 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ---------------------NNIFSI 224 G+ F + +GLR + + L F + Sbjct: 187 CK-GTFYDNLFNVAISTGLRPGELYALEAEDLDFEKKVIHITKSLSYQKFEGDTGKTFHM 245 Query: 225 KTQKTGTI-ITVELPDG---------FMKLLAMTPIGKET-------FFINNDKQKMNAT 267 KT + V + K + G +T F +NA Sbjct: 246 GKTKTKSSYRDVPMNRRCEIALKKQLLQKRVVSGRNGAKTLKGFENLIFTTKYDTPLNAQ 305 Query: 268 QFSIWFKAKATKAGVNK---------SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318 ++ K + + + S H R AT +AG + G T+ Sbjct: 306 IYADAIKVIVEQINLMREELEQFETFSGHCFRHTFATRCFEAGIQPKTVQKYLGHATLQM 365 Query: 319 A-ETYTK 324 + YT Sbjct: 366 TMDLYTH 372 >gi|326315550|ref|YP_004233222.1| integrase family protein [Acidovorax avenae subsp. avenae ATCC 19860] gi|323372386|gb|ADX44655.1| integrase family protein [Acidovorax avenae subsp. avenae ATCC 19860] Length = 326 Score = 100 bits (249), Expect = 4e-19, Method: Composition-based stats. Identities = 40/289 (13%), Positives = 79/289 (27%), Gaps = 39/289 (13%) Query: 75 ISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIR---SGVESRKH 128 + Y + LA + + ++ + D ++ T HIR + + + Sbjct: 15 VLRYLEHVRVEKRLAQRTVTLYTLDLAKLAASARDAGVPLLQLQTAHIRRFVAQMHAGGR 74 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS- 187 L+ R F WA RQ V NP V P+ + +D + F Sbjct: 75 GGRGIALILSGWRGFFTWAARQGLVPHNPVQGVRAPRAPKPLPKALGVDDAVRLAEFEGS 134 Query: 188 ------EGSQPRLAFEFLLYSGLRCSDSCRA------GVQHLQNNIFSIKT------QKT 229 ++ E L GLR + Q ++ K Sbjct: 135 SGSDPWLEARDAAMVELLYGCGLRVGELAGLDAVPGPDTQRQGRGWIDLQAAEAHVFGKG 194 Query: 230 GTIITVELPD------------GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKA 277 +V + A + F+ ++ + ++ Sbjct: 195 SKRRSVPVGSAALAALRAWLEVRLQPFGAASGRADAALFLGRRGARLTGQSIWSRLRQRS 254 Query: 278 TKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 AG+ H +R A+ + + G + + YT+ Sbjct: 255 QLAGLSTPVHPHMLRHSFASHLLQSSGDLRAVQELLGHANITTTQVYTR 303 >gi|326402598|ref|YP_004282679.1| phage integrase family protein [Acidiphilium multivorum AIU301] gi|325049459|dbj|BAJ79797.1| phage integrase family protein [Acidiphilium multivorum AIU301] Length = 423 Score = 100 bits (249), Expect = 4e-19, Method: Composition-based stats. Identities = 52/327 (15%), Positives = 102/327 (31%), Gaps = 39/327 (11%) Query: 58 REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRI---------SFESYFDQIIRKSGD 108 P TT+ + Y A+ G + R I GD Sbjct: 90 PAAPVEPDGSTTTVGQICDWYLLEANAGRILGRRRRPIRASTLTMDKSRIETHIRPLLGD 149 Query: 109 FDYRKITTKHIRSGVES-------------RKHTP----SSAIQFLTSMRVLFKWAVRQE 151 + I + R TP A + ++S+ +F+ AVR Sbjct: 150 RRVSSLKLGDIEAMQADIAAGKTAKGRAGPRGGTPIGGEGVAARTVSSLHSIFEHAVRWG 209 Query: 152 YVAINPCLSVERPKRKTEGIRPWTKEDM----QQFKSFWSEGSQP--RLAFEFLLYSGLR 205 + NP V + R + ++ + ++ +EG P A LL +G R Sbjct: 210 KIESNPARGVRKLASAPRERR-LSSVEIARLGEAMRTLAAEGEHPTGLAAIRLLLLTGFR 268 Query: 206 CSDSCRAGVQHLQNNI--FSIKTQKTGTIITVELPDGFMKLLAMTPI--GKETFFINNDK 261 + + + KTG + V + + L+ P+ G F + Sbjct: 269 RMECLALQRAWVDAEQRAIRLPETKTGPQMRV-VGQAAIDLILAQPVTDGSPYVFPADWG 327 Query: 262 QKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321 + + + + H +R A+++ D G + + A G + Sbjct: 328 NGHFIGVVRVLERVCGAARLTDVTPHTLRHTFASVAGDLGFSELTIAALLGHAARGVTQR 387 Query: 322 YTKGADRIRLGIKN-SRRISSVVDSDD 347 Y + +R+ S ++ +++D D Sbjct: 388 YVHIDEALRVAADRVSAKVVALLDGRD 414 >gi|254486283|ref|ZP_05099488.1| tyrosine recombinase XerC [Roseobacter sp. GAI101] gi|214043152|gb|EEB83790.1| tyrosine recombinase XerC [Roseobacter sp. GAI101] Length = 314 Score = 100 bits (249), Expect = 4e-19, Method: Composition-based stats. Identities = 44/249 (17%), Positives = 74/249 (29%), Gaps = 20/249 (8%) Query: 104 RKSGDFDYRKITTKHIRSGVESRKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160 G IT +RS + + P S + L++++ ++W +E LS Sbjct: 56 DSIGLGALANITISDMRSWMARTRGPDVGPRSLARKLSAVKAFYRWLAEREGFEPTAVLS 115 Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSE-------GSQPRLAFEFLLYSGLRCSDSCRAG 213 PK + RP + + ++ L GLR S++ Sbjct: 116 TRSPKFPKKLPRPLAVDAAKAMIDCVELQSPRPWVAARDVAVLTLLWGCGLRISEALGLK 175 Query: 214 VQHLQNNIFSIKTQKTGTIITVELPDGFM----KLLAMTPIGKET---FFINNDKQKMNA 266 K G V + L P +E F + A Sbjct: 176 GADAPLPDVLRIVGKGGKERVVPVLPAARDAVDAYLRACPHPQEHGTALFKAVRGGPLAA 235 Query: 267 TQFSIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 + + G+ +A H +R AT DAG + G ++ + YT Sbjct: 236 RAIAQVMADARMQLGLPATATPHAMRHSFATHLLDAGGDLRAIQELLGHASLSTTQAYT- 294 Query: 325 GADRIRLGI 333 D RL Sbjct: 295 AVDTARLMD 303 >gi|254470612|ref|ZP_05084016.1| phage integrase family protein [Pseudovibrio sp. JE062] gi|211960923|gb|EEA96119.1| phage integrase family protein [Pseudovibrio sp. JE062] Length = 415 Score = 100 bits (249), Expect = 4e-19, Method: Composition-based stats. Identities = 52/347 (14%), Positives = 102/347 (29%), Gaps = 49/347 (14%) Query: 25 FRKGHGRRIRLPY-------PHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISE 77 +R GR RL P ++ + + A + + T+ L+ Sbjct: 45 YRTLEGRSCRLTLGKYGELTPDQARGLAVDVLAKVRNGEDPTVNRKIIRNAPTVDDLLDM 104 Query: 78 YRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQF 136 Y S + ++ + + G +T + I S + TP A Sbjct: 105 YLSEHVEVHNKPKSAVEIRRILERCVRKPLGKAKLASVTRQDISKLHRSMRRTPRQANHV 164 Query: 137 LTSMRVLFKWAVRQEYVA--INPCLSVERPKRKTEGIRPWTKEDMQQF------------ 182 L + F A NP V+R K + E R T +++Q+ Sbjct: 165 LAIISKAFNLAEIWGLRPEHSNPVRLVKRYK-ENERDRFLTGDELQRLGKTLELAEKEGL 223 Query: 183 -------------------KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNI 221 K + LLY+G R + +H+ Sbjct: 224 PWIIKAKPENRKHLRHDIEKRRTPVNPMALYCLKLLLYTGARLMEIASLEWKHVDFEEGA 283 Query: 222 FSIKTQKTGTIITVELPDGFMKLLAMTPI--GKETFF--INNDKQKMNATQFSIWFKAKA 277 ++ ++K + + +L+ P G IN+ + + ++ Sbjct: 284 IALPSKKGDGRKPHPVSGNVLDILSDIPRLDGSPYVLARINDPTRHITKELVENAWQRVR 343 Query: 278 TKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 A + + H +R T +A +G+ A + + V Y Sbjct: 344 HHADIPDVRIHDLRHTVGTFAAQSGSNAFLISHLLRHRNVTITNRYV 390 >gi|86159979|ref|YP_466764.1| Phage integrase [Anaeromyxobacter dehalogenans 2CP-C] gi|85776490|gb|ABC83327.1| Phage integrase [Anaeromyxobacter dehalogenans 2CP-C] Length = 275 Score = 100 bits (249), Expect = 4e-19, Method: Composition-based stats. Identities = 47/267 (17%), Positives = 91/267 (34%), Gaps = 25/267 (9%) Query: 101 QIIRKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINP 157 + G I I + + S L ++R L AV E + P Sbjct: 5 HLSPFFGKKKLIDIGPAEIEEFKAKKLAEGQSKKSINNHLAALRKLLNLAVEWEVIPRAP 64 Query: 158 CLSVERPKRKTE---GIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGV 214 V+ + KTE + T ++ ++ + + R L +GLR + Sbjct: 65 --KVKGFRAKTEYITEEQFLTFDEAERL--VHAAAPEWRTFIITALKTGLRVGELLALKW 120 Query: 215 QHLQ--NNIFSIKTQ---------KTGTIITVELPDGFMKLLAMTPIGKETF-FINNDKQ 262 + L ++ K G V L D + +L K T+ F D + Sbjct: 121 EDLDLVAGQLVVRRTLWHKQEGPPKGGRNRKVPLSDEAIAVLKAHRHLKGTYVFCEADGR 180 Query: 263 KMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320 ++ ++ + +A + K + HG+R A+ G + + G ++++ Sbjct: 181 RLTHSRVKDVVPSTCRRAQLAKRLTTHGLRHTFASHLVMRGVSLMAVKELLGHESIEMPL 240 Query: 321 TYTK-GADRIRLGIKNSRRISSVVDSD 346 Y+ D R +K SSV + + Sbjct: 241 RYSHLSPDVKRDAVKLLDAPSSVANGN 267 >gi|257879743|ref|ZP_05659396.1| site-specific recombinase [Enterococcus faecium 1,230,933] gi|261209087|ref|ZP_05923490.1| predicted protein [Enterococcus faecium TC 6] gi|289566304|ref|ZP_06446734.1| predicted protein [Enterococcus faecium D344SRF] gi|294616983|ref|ZP_06696703.1| site-specific recombinase, phage integrase family [Enterococcus faecium E1636] gi|314940614|ref|ZP_07847744.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus faecium TX0133a04] gi|314942809|ref|ZP_07849625.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus faecium TX0133C] gi|314953492|ref|ZP_07856407.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus faecium TX0133A] gi|314992553|ref|ZP_07857972.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus faecium TX0133B] gi|314997829|ref|ZP_07862737.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus faecium TX0133a01] gi|257813971|gb|EEV42729.1| site-specific recombinase [Enterococcus faecium 1,230,933] gi|260076914|gb|EEW64638.1| predicted protein [Enterococcus faecium TC 6] gi|289161880|gb|EFD09750.1| predicted protein [Enterococcus faecium D344SRF] gi|291590137|gb|EFF21926.1| site-specific recombinase, phage integrase family [Enterococcus faecium E1636] gi|313588144|gb|EFR66989.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus faecium TX0133a01] gi|313592920|gb|EFR71765.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus faecium TX0133B] gi|313594474|gb|EFR73319.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus faecium TX0133A] gi|313598444|gb|EFR77289.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus faecium TX0133C] gi|313640201|gb|EFS04782.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus faecium TX0133a04] Length = 388 Score = 100 bits (248), Expect = 4e-19, Method: Composition-based stats. Identities = 65/376 (17%), Positives = 126/376 (33%), Gaps = 69/376 (18%) Query: 11 VTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70 + + +GK YY +KG F + L + K E ++ KP+ Sbjct: 18 LYVRKDENGKQEYYVKKG--------------FKTEKEAKLHEARKKVEIEDTGYHKPSN 63 Query: 71 --LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH 128 + E+ S + + + + I+ K G+ KIT H ++ V Sbjct: 64 DLFITVYEEWLPSYRNRVQETTYQRTKDLFRLHILPKFGNKSISKITPVHCQNAVNEWAL 123 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR-PWTKEDMQQFKSFW- 186 + Q + +F++A+ E + NP + PKR+ + ++ E+++ F Sbjct: 124 KFKNIKQLKSYSSQIFEYAIFAELLHRNPMANTNLPKREKKENENYFSLEELKAFWDILN 183 Query: 187 -SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKT--------QKTGTIITV 235 E + L F+ L+ +G+R + + + + ++ +K TV Sbjct: 184 KEEPLKHILIFQLLITTGIRKGELAALHWSDIYFEEQLMYVRKSYATIRNEEKNARRKTV 243 Query: 236 ELPDGFMKL--LAMTPIGKETF------------------------------FINNDK-- 261 + + + PI +T ++N D Sbjct: 244 RIQKNTKNISSERILPIDAQTIEMLKIWKKEQARELLQFGINTNTKNQLIFTYVNADGDI 303 Query: 262 -QKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319 Q ++A + K K + HG R AT+ + GA+ E G K + Sbjct: 304 NQPLHADYSNNILKRLEKKYKFKHVTIHGFRHTHATLLLEGGASIKETQDRLGHKNAETT 363 Query: 320 ----ETYTKGADRIRL 331 T+ A R L Sbjct: 364 LNTYSHVTEKAQRNAL 379 >gi|225570002|ref|ZP_03779027.1| hypothetical protein CLOHYLEM_06097 [Clostridium hylemonae DSM 15053] gi|225161472|gb|EEG74091.1| hypothetical protein CLOHYLEM_06097 [Clostridium hylemonae DSM 15053] Length = 384 Score = 100 bits (248), Expect = 4e-19, Method: Composition-based stats. Identities = 52/301 (17%), Positives = 105/301 (34%), Gaps = 32/301 (10%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH 128 + L S Y +S L ++ ++ ++ +I+ G+ +I IR Sbjct: 77 SFSDLYSAYFESMK-HRLRDSTLLTKDNLIKTKILPYFGNIPINQIDPGAIREWQNIMCG 135 Query: 129 TPSSAIQFLTS---------MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP-WTKED 178 + + +S + +F +AVR + NPCL+ +K G + W E+ Sbjct: 136 QQMNNGKHYSSTYLKAMNNQLSTVFNYAVRYYNLPSNPCLAAGSMGKKQAGQKTFWKPEE 195 Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII--TVE 236 F ++SE + L F L Y+G+R + ++ +K+ I T Sbjct: 196 FHIFLEYFSENMEMYLIFSLLYYTGVRIGEMLAFSYDDFNLQKGTVTVRKSYRRIRKTDY 255 Query: 237 LPDG-------FMKLLAMTPIGKETFFINNDKQKMNATQF--------SIWFKAKATKAG 281 + + L A + +F + M+ F S + Sbjct: 256 ITPPKTPKSFRVIALPAFLIEQLQKYFSLKEGSGMDERIFSGISRYHISKFMNEACENTK 315 Query: 282 VNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK-GADRIRLGIKNSRR 338 V K H +R A++ + G + + G + V+ Y+ R + ++ R Sbjct: 316 VKKIRIHDLRHSHASLLIELGVSPVLIAERLGHENVETTLNIYSHLYPHRQKELAESLDR 375 Query: 339 I 339 + Sbjct: 376 L 376 >gi|254457347|ref|ZP_05070775.1| phage integrase [Campylobacterales bacterium GD 1] gi|207086139|gb|EDZ63423.1| phage integrase [Campylobacterales bacterium GD 1] Length = 278 Score = 100 bits (248), Expect = 4e-19, Method: Composition-based stats. Identities = 35/258 (13%), Positives = 86/258 (33%), Gaps = 19/258 (7%) Query: 76 SEYRKSA-HWGSLAVNSRISF-ESYFDQII--RKSGDFDYRKITTKHIRSGVESRKHTPS 131 E+ +S + + + S+ E+ + + + + I R + P Sbjct: 10 VEFLQSLEDFRGYSELTIKSYDEAITEALRYVEIIEEDTHTTINLMPYRIKISQL--NPK 67 Query: 132 SAIQFLTSMRVLFKWAVRQE---YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 + + L+++R K+ + Y+ + E K +P + + + ++ Sbjct: 68 TISKKLSAIRTFVKYLNDNKIKIYLKAD-----ESVKVAKTLPKPISHKHI--LEALEHA 120 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT 248 R L GLR S+ + + + + K V L +L+ Sbjct: 121 EFYERFVVTMLYSLGLRISELASLKLSDISDEWIRV-LGKGNKHRDVPLLRTTRELIDEY 179 Query: 249 PIGK--ETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHE 306 + F + ++++ + G+ + H +R AT ++ A + Sbjct: 180 LSNNCPKIFLFEANDERLSENSLRYTVNKVFKRVGLKVTPHQLRHSYATALLNSSAPIAD 239 Query: 307 LMATYGWKTVDQAETYTK 324 + G ++ + YTK Sbjct: 240 VSELLGHSSMATTQIYTK 257 >gi|161613589|ref|YP_001587554.1| hypothetical protein SPAB_01311 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|161362953|gb|ABX66721.1| hypothetical protein SPAB_01311 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] Length = 359 Score = 100 bits (248), Expect = 4e-19, Method: Composition-based stats. Identities = 45/285 (15%), Positives = 91/285 (31%), Gaps = 30/285 (10%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--K 127 T+ I Y +L+VN+ + + K + ++TT+HI +ES + Sbjct: 75 TVSAWIDRYEVLLQRRNLSVNTYKIRSNQLATVREKMEEIILAEVTTRHIAKFLESWITE 134 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + A + + +F+ A+ + ++ NP + P+ K R ++ + + + Sbjct: 135 GKKTMAGAMRSVLSDMFREAIVEGHIVKNPVEATRIPEIKVARERL----QLETYNATRA 190 Query: 188 EGSQPRLAF----EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243 F + L +G R D + +N + KTG I + L Sbjct: 191 AAEHMPAWFPLAMDLALVTGQRREDIVNMKFSDVVDNRLYVTQIKTGMKIAIPLSLTLEA 250 Query: 244 --------LLAMTPIGKETFFI------NNDKQKMNATQFSIWFKAKATKAGVNKS---- 285 + + + I N+ ++ + F +GVN S Sbjct: 251 PGLRLGTVIDRCRLVSRTDIMISAGIRKNSPTGNIHPDGLTKTFVKARKASGVNFSNNPP 310 Query: 286 -AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 H +R A G + + + Y D Sbjct: 311 TFHEIR-SLAGRLYKNEHGEVFAQKLLGHTSANTTKLYLDERDDK 354 >gi|315144921|gb|EFT88937.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX2141] Length = 392 Score = 100 bits (248), Expect = 4e-19, Method: Composition-based stats. Identities = 63/392 (16%), Positives = 124/392 (31%), Gaps = 72/392 (18%) Query: 1 MTPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY 60 M R +T GKI +YF+ R E+ AY+ K++ Sbjct: 1 MENMSRFKKHITAT----GKITWYFQAFRTTRRGFNSKREAQL--AYLEMEKQHRNKQKR 54 Query: 61 INS-PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119 + S + + KW EY +S + V + E + R G ++++ + Sbjct: 55 LASNDKFSVVSQKWF--EYYRSLN--EQKVATYDKREEQVKILNRWIGGKKLSSLSSEEL 110 Query: 120 RSGVESRKHT----------PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK-- 167 + + K +S + + ++F + ++ + NP V+ PK + Sbjct: 111 QKFLFILKEKGIDGVNVGYAKNSLQSLVQVLNMVFNYCKKKNLINENPMKFVKMPKYQLS 170 Query: 168 ---------TEGIRPWTKEDMQQFKSF--WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH 216 + + T ++++ F ++ E + F L Y+G R S++ Q Sbjct: 171 LKDLKESVNSLEDKFLTVDELRAFLNYGIVYEELPMSVLFHVLFYTGCRVSEALALQPQD 230 Query: 217 LQNNI-----------------FSIKTQKT-GTIITVELPD-------GFMKLLAMTPIG 251 + F I+T KT + V + + +L T Sbjct: 231 IDFERNEILFYKQTAVKGKSKDFRIETTKTVSSARRVPVTPLVMEKLQELIDVLNKTKRN 290 Query: 252 -----KETFFI-----NNDKQKMNATQFSIWFKAKATKAGVNKSAHG--VRKFSATISAD 299 ET+ + K + G+NK H R A++ A+ Sbjct: 291 SNFVVDETYLFVYLDPGKRGVPYRREYVNDHVKRCVERCGINKDFHTHLARHTMASLVAE 350 Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRL 331 + L G ++ Y +L Sbjct: 351 Y-CSWDVLKDHLGHTDSTTSKIYRHLTSTEKL 381 >gi|260433010|ref|ZP_05786981.1| phage integrase family protein [Silicibacter lacuscaerulensis ITI-1157] gi|260416838|gb|EEX10097.1| phage integrase family protein [Silicibacter lacuscaerulensis ITI-1157] Length = 417 Score = 100 bits (248), Expect = 4e-19, Method: Composition-based stats. Identities = 52/304 (17%), Positives = 101/304 (33%), Gaps = 26/304 (8%) Query: 60 YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119 I + + +K L+ +Y K H L S + + + GD D ++T + I Sbjct: 96 RIEAQLSERDKVKTLLEQYAK-RHLSKLRSGS-EVKRRLETEFLPRYGDHDIHEVTKRDI 153 Query: 120 RSGVESRKHTPS--SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177 +E + +A + + F W + ++ + I+P V+ ++ R + Sbjct: 154 LELLEKIADSGRITTANRMRLYLSGFFNWCLERDAIPISPVQGVKPVAKEKSRDRVLNDD 213 Query: 178 DMQQFKSFWSEGSQP-RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI--KTQKTGTIIT 234 +++ F P R A + LL +G R ++ L + + + + K G Sbjct: 214 EIRWFWKACERAGYPWRQAGQTLLLTGQRLNEVLGMTDDELHGDAWHLSAQRTKNGREHL 273 Query: 235 VELPDGFMKLL---AMTPIGKETFFINNDKQK----MNATQFSIWFKAKATKAG------ 281 V L +L F + A F A+ +A Sbjct: 274 VPLSQAARDVLSSVERIESPSRLLFTTTGRTPICGHFKARNRLSRFMAEIAEAETGEAIE 333 Query: 282 -VNKSAHGVRKFSATISADAGATAHELMATYGWKTVD---QAETYTKG--ADRIRLGIKN 335 + + H +R+ +AT A G A + Y + AD R ++ Sbjct: 334 IPHWTFHDLRRTAATGMARLGIPVRVTEAVLNHVSGTGGGIVAVYQRHDFADEKRKALEA 393 Query: 336 SRRI 339 R Sbjct: 394 WARF 397 >gi|88607956|ref|YP_506332.1| phage integrase family site specific recombinase [Neorickettsia sennetsu str. Miyayama] gi|88600125|gb|ABD45593.1| site-specific recombinase, phage integrase family [Neorickettsia sennetsu str. Miyayama] Length = 307 Score = 100 bits (248), Expect = 4e-19, Method: Composition-based stats. Identities = 49/265 (18%), Positives = 96/265 (36%), Gaps = 31/265 (11%) Query: 88 AVNSRISFESYFDQIIRKSGDFD--------YRKITTKHIRSGVESRKH---TPSSAIQF 136 + N+ +++ + F I +K +R+ + SR+ + + + Sbjct: 27 SSNTLVAYSRDLMAFLDFLSTFRGEPVRFTSLDCIDSKDLRAWLASRRKNSISFRTNARA 86 Query: 137 LTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----QQF---KSFWSE 188 L+S++ FK+ A + + + L V + R T +++ ++F K+ W Sbjct: 87 LSSVKSFFKYLAKHKGIINED-VLGVVLRFKPNTLPRSLTFKEIIELIEKFSFLKTSWIV 145 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL--- 245 L + L SGLR S++ V L N+ I K G + L L Sbjct: 146 KRNIALCY-LLYGSGLRISEALSLTVADLTNSEIKII-GKGGRERMIRLLPIVRVALSDY 203 Query: 246 ----AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISAD 299 P F++ + K+ T + F + + + + H +R AT Sbjct: 204 IASCPFQPDAGGFLFLDRNGNKLCRTAVARAFLSIRRGFNLPDHITPHALRHSFATHLLQ 263 Query: 300 AGATAHELMATYGWKTVDQAETYTK 324 G ++ G ++ E YTK Sbjct: 264 EGVGVRKIQELLGHASLASTEVYTK 288 >gi|269102990|ref|ZP_06155687.1| phage integrase family protein [Photobacterium damselae subsp. damselae CIP 102761] gi|268162888|gb|EEZ41384.1| phage integrase family protein [Photobacterium damselae subsp. damselae CIP 102761] Length = 291 Score = 100 bits (248), Expect = 4e-19, Method: Composition-based stats. Identities = 43/271 (15%), Positives = 92/271 (33%), Gaps = 18/271 (6%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKHT 129 +L ++ + ++ +I + D +TT ++ + H+ Sbjct: 10 DYLYEQHLTHLTLQGKRPATIDAYSRALRRITHQL-DKSPDTLTTDDLKRYFTQLIKTHS 68 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 S+ ++ FK +++++ +N + +P T ++ + S+ Sbjct: 69 WSTVKIDRNGLQFFFKHVLQRDWEWLN----IVKPPHVKTLPDILTPSEVSLLINATSQ- 123 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF--SIKTQKTGTIITVELPDG-FMKLLA 246 + ++ F L GLR + V + ++ I+ K G + LP L Sbjct: 124 LRYQVFFLTLYSLGLRLGEGLNLTVGDIDSHRMLVHIRQGKGGKDRFIPLPRRTLYALRY 183 Query: 247 MTPIGKETFFI-----NNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISAD 299 K + ++ N + M+ KA G+ KS H +R AT + Sbjct: 184 YWQTHKNSRYLFPSQFNLNHTVMDRGGVQKAMKAVIKSCGITKSISPHNLRHSYATHLLE 243 Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIR 330 G + G +++ YT D R Sbjct: 244 RGLDLRSVQHLLGHNSLNATAKYTHLTDISR 274 >gi|198244121|ref|YP_002215215.1| phage integrase [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|197938637|gb|ACH75970.1| phage integrase [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] Length = 359 Score = 100 bits (248), Expect = 4e-19, Method: Composition-based stats. Identities = 49/287 (17%), Positives = 95/287 (33%), Gaps = 34/287 (11%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--- 126 T+ I Y SL+VN+ + + K G+ ++TT+HI +ES Sbjct: 75 TVSAWIDRYEVLLQRRSLSVNTYKIRSNQLATVREKMGEIILAEVTTRHIAKFLESWITE 134 Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 K+T + A++ + + +F+ A+ + ++ NP + P+ K R ++ + + Sbjct: 135 GKNTMAGAMR--SVLSDMFREAIVEGHIVKNPVEATRIPEIKVARERL----QLETYNAT 188 Query: 186 WSEGSQPRLAF----EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241 + F + L +G R D + +N + KTG I + L Sbjct: 189 RAAAEHMPAWFPLAMDLALVTGQRREDIVNMKFSDVVDNRLYVTQIKTGMKIAIPLSLTL 248 Query: 242 MK--------LLAMTPIGKETFFI------NNDKQKMNATQFSIWFKAKATKAGVNKS-- 285 + + + I N+ ++ + F +GVN S Sbjct: 249 EAPGLRLGTVIDRCRLVSRTDIMISAGIRKNSPTGNIHPDGLTKTFVKARKASGVNFSNN 308 Query: 286 ---AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 H +R A G + + Y D Sbjct: 309 PPTFHEIR-SLAGRLYKNEHGEVFAQKLLGHTLANTTKLYLDERDDK 354 >gi|320202251|gb|EFW76823.1| Shufflon-specific DNA recombinase [Escherichia coli EC4100B] Length = 374 Score = 100 bits (248), Expect = 4e-19, Method: Composition-based stats. Identities = 45/274 (16%), Positives = 97/274 (35%), Gaps = 19/274 (6%) Query: 65 RKKPTTLKWLISEYRKSAHWGS---LAVNSRIS---FESYFDQIIRKSGDFDYRKITTKH 118 + + T+ + +Y K+ L R++ ++ + D + Sbjct: 6 KIRKMTISRALDKYLKTVSIHKKGHLQEFYRVNVIKRHPIAERYMDDITTVDIANYRDQR 65 Query: 119 IRSG--VESRKHTPSSAIQFLTSMRVLFKWA-VRQEYVAINPCLSVERPKRKTEGIRPWT 175 + R+ T ++ L + LF A V +NP V +PK + R T Sbjct: 66 LAQINPRTGRQITGNTVRLELALLSSLFNIARVEWGTCRMNPVELVRKPKISSGRDRRLT 125 Query: 176 KEDMQQFKSFWSEGSQP-RLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQKTGTI 232 + ++ ++ E +Q + F L + +R + +H+ + + T K G Sbjct: 126 SGEERRLSRYFKEKNQALYVIFHLALETAMRQGEILSLRWEHVDLQHGVAHLPTTKNGAP 185 Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRK 291 V L L M P +N + ++ F ++ + + N H +R Sbjct: 186 RDVPLSRKARNYLQMLPTQ-----LNGNIFSYTSSGFKSAWRTALHELKIENLHFHDLRH 240 Query: 292 FSATISADAG-ATAHELMATYGWKTVDQAETYTK 324 + + + G E+ A G ++++ + YT Sbjct: 241 EAISRFFELGTLNVIEVAAISGHRSLNMLKRYTH 274 >gi|116751410|ref|YP_848097.1| phage integrase family protein [Syntrophobacter fumaroxidans MPOB] gi|116700474|gb|ABK19662.1| phage integrase family protein [Syntrophobacter fumaroxidans MPOB] Length = 415 Score = 100 bits (248), Expect = 4e-19, Method: Composition-based stats. Identities = 59/376 (15%), Positives = 106/376 (28%), Gaps = 60/376 (15%) Query: 8 PPFVTKERTRHGKI----IYYFRKGHGRRIRLPYPHESTFIPAYMSALT---------GS 54 P +E R G +YY ++ L F+ A G Sbjct: 9 PGVFYREADRIGGKGAEKVYYILFKQDGKV-LEEKVGRQFVDDMTPARAAGIRAERIEGK 67 Query: 55 TPKREYINSPRKKPT-----------TLKWLISEY-RKSAHWGSLAVNSRISFESYFDQI 102 P R+ I R+ T+ L EY R + + V FE + I Sbjct: 68 RPSRKEIKEEREAQEHAVKEAEANRWTITRLWEEYKRGTPGLKGI-VTDENRFEKHIKPI 126 Query: 103 IRKSGDFDYRKITTKHIRSGVESRKHTPS-----------------------SAIQFLTS 139 + + +R G+ + P+ + L Sbjct: 127 FGDKQPHELGALDVDRLRIGLLKKARKPAVQKTPGDSKPGTVKKSVDPLKPGTVKNVLEL 186 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW--SEGSQPRLAFE 197 +R + + V++ ++E PK T +++ + E + Sbjct: 187 LRRIINFGVKKNLCTG-AGFAIELPKVNNLRTEDLTPDELAKLMDAIEKDENLIAANLMK 245 Query: 198 FLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF 255 L++G+R + R L I+ K G T+ + + K+L F Sbjct: 246 MALFTGMRRGELFRLKWSDLDFERGFIHIRGPKGGVDQTIPVNEEARKILQSHRRTNSGF 305 Query: 256 FINNDKQKMNATQFSIWFKAKATKAGVNKSA---HGVRKFSATISADAGA-TAHELMATY 311 AG+ K HG+R A++ A +G + L Sbjct: 306 VFPGRGGHQRID-IHKSVNKIKEAAGLPKGFRALHGLRHAYASMLASSGKVDLYTLQRLL 364 Query: 312 GWKTVDQAETYTKGAD 327 K+ + Y D Sbjct: 365 THKSPTMTQRYAHLRD 380 >gi|29376385|ref|NP_815539.1| phage integrase family site specific recombinase [Enterococcus faecalis V583] gi|227553657|ref|ZP_03983706.1| bacteriophage integrase [Enterococcus faecalis HH22] gi|256619313|ref|ZP_05476159.1| phage integrase [Enterococcus faecalis ATCC 4200] gi|256961658|ref|ZP_05565829.1| phage integrase [Enterococcus faecalis Merz96] gi|256964874|ref|ZP_05569045.1| phage integrase [Enterococcus faecalis HIP11704] gi|257090143|ref|ZP_05584504.1| phage integrase [Enterococcus faecalis CH188] gi|293383362|ref|ZP_06629275.1| site-specific recombinase, phage integrase family [Enterococcus faecalis R712] gi|293388986|ref|ZP_06633471.1| site-specific recombinase, phage integrase family [Enterococcus faecalis S613] gi|294614272|ref|ZP_06694191.1| site-specific recombinase, phage integrase family [Enterococcus faecium E1636] gi|307272962|ref|ZP_07554209.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX0855] gi|307275714|ref|ZP_07556854.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX2134] gi|312903582|ref|ZP_07762762.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX0635] gi|312907810|ref|ZP_07766801.1| site-specific recombinase, phage integrase family [Enterococcus faecalis DAPTO 512] gi|312910429|ref|ZP_07769276.1| site-specific recombinase, phage integrase family [Enterococcus faecalis DAPTO 516] gi|29343848|gb|AAO81609.1| site-specific recombinase, phage integrase family [Enterococcus faecalis V583] gi|227177214|gb|EEI58186.1| bacteriophage integrase [Enterococcus faecalis HH22] gi|256598840|gb|EEU18016.1| phage integrase [Enterococcus faecalis ATCC 4200] gi|256952154|gb|EEU68786.1| phage integrase [Enterococcus faecalis Merz96] gi|256955370|gb|EEU72002.1| phage integrase [Enterococcus faecalis HIP11704] gi|256998955|gb|EEU85475.1| phage integrase [Enterococcus faecalis CH188] gi|291079153|gb|EFE16517.1| site-specific recombinase, phage integrase family [Enterococcus faecalis R712] gi|291081767|gb|EFE18730.1| site-specific recombinase, phage integrase family [Enterococcus faecalis S613] gi|291592931|gb|EFF24521.1| site-specific recombinase, phage integrase family [Enterococcus faecium E1636] gi|306507590|gb|EFM76720.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX2134] gi|306510576|gb|EFM79599.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX0855] gi|310626838|gb|EFQ10121.1| site-specific recombinase, phage integrase family [Enterococcus faecalis DAPTO 512] gi|310633458|gb|EFQ16741.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX0635] gi|311289702|gb|EFQ68258.1| site-specific recombinase, phage integrase family [Enterococcus faecalis DAPTO 516] gi|315032050|gb|EFT43982.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX0017] gi|315162894|gb|EFU06911.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX0645] gi|315575946|gb|EFU88137.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX0309B] gi|315577866|gb|EFU90057.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX0630] gi|315580736|gb|EFU92927.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX0309A] Length = 392 Score = 100 bits (248), Expect = 4e-19, Method: Composition-based stats. Identities = 63/392 (16%), Positives = 124/392 (31%), Gaps = 72/392 (18%) Query: 1 MTPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY 60 M R +T GKI +YF+ R E+ AY+ K++ Sbjct: 1 MENMSRFKKHITAT----GKITWYFQAFRTTRRGFNSKREAQL--AYLEMEKQHRNKQKR 54 Query: 61 INS-PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119 + S + + KW EY +S + V + E + R G ++++ + Sbjct: 55 LASNDKFSVVSQKWF--EYYRSLN--EQKVATYDKREEQVKILNRWIGGKKLSSLSSEEL 110 Query: 120 RSGVESRKHT----------PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK-- 167 + + K +S + + ++F + ++ + NP V+ PK + Sbjct: 111 QKFLFILKEKGIDGVNVGYAKNSLQSLVQVLNMVFNYCKKKNLINENPMKFVKMPKYQLS 170 Query: 168 ---------TEGIRPWTKEDMQQFKSF--WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH 216 + + T ++++ F ++ E + F L Y+G R S++ Q Sbjct: 171 LKDLKESVNSLEDKFLTVDELRAFLNYGIVYEELPMSVLFHVLFYTGCRVSEALALQPQD 230 Query: 217 LQNNI-----------------FSIKTQKT-GTIITVELPD-------GFMKLLAMTPIG 251 + F I+T KT + V + + +L T Sbjct: 231 IDFERNEILFYKQTAVKGKSKDFRIETTKTVSSARRVPVTPLVMEKLQELIDVLNKTKRN 290 Query: 252 -----KETFFI-----NNDKQKMNATQFSIWFKAKATKAGVNKSAHG--VRKFSATISAD 299 ET+ + K + G+NK H R A++ A+ Sbjct: 291 SNFVVDETYLFVYLDPGKRGVPYRREYVNDHVKRCVERCGINKDFHTHLARHTMASLVAE 350 Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRL 331 + L G ++ Y +L Sbjct: 351 Y-CSWDVLKDRLGHTDSTTSKIYRHLTSTEKL 381 >gi|169245911|gb|ACA50932.1| site-specific recombinase [Mycobacterium marinum DL240490] Length = 345 Score = 100 bits (248), Expect = 4e-19, Method: Composition-based stats. Identities = 45/314 (14%), Positives = 98/314 (31%), Gaps = 57/314 (18%) Query: 77 EYRKSAHWGSLAVNSRISFESYFDQII-------RKSGDFDYRKITTKHIRSGVESRKHT 129 E+ + ++ ++ F+ + + + +R+ T Sbjct: 21 EFLADRAIRKPSPHTTKAYRQDFEAVALLLAGGADAISTLPTNALNKESLRAAFAVYAET 80 Query: 130 --PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ------- 180 +S + ++ L + + NP ++ RPK + +T + + Sbjct: 81 HSAASIRRCWSTWNTLCTFLYTANLLDANPMPAIGRPKVPKALPKSYTADAVNNLIAAID 140 Query: 181 -----QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ---NNIFSIKTQKTGTI 232 +S W E + R L +GLR + RA + ++ + + K Sbjct: 141 TDDGSARRSNWPE--RDRAIIFTALLTGLRADELIRANIGDIRCNADGGVLHVSGKGNKD 198 Query: 233 ITVELPDGFMKLLAM-----------------------TPIGKETFFINNDKQKMNATQF 269 + +++L F+ +D +++ Sbjct: 199 RRIPCDTKLIEMLQRYLQTREDRIPHLRKRSASPDAMGRFSPTAPLFVGSDGERITRGTL 258 Query: 270 SIWFKAKATKAGVNKS------AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 KAG+N HG+R AT A+A + + LM G +++ ++ Y Sbjct: 259 QYRILRGFKKAGINNDRAAGALVHGLRHTFATELANANVSVYALMKLLGHESMVTSQRYV 318 Query: 324 --KGADRIRLGIKN 335 AD R +N Sbjct: 319 DGAAADTRRAAERN 332 >gi|126640131|ref|YP_001083115.1| site-specific tyrosine recombinase [Acinetobacter baumannii ATCC 17978] gi|126386015|gb|ABO10513.1| site-specific tyrosine recombinase [Acinetobacter baumannii ATCC 17978] gi|322506426|gb|ADX01880.1| Site-specific tyrosine recombinase [Acinetobacter baumannii 1656-2] gi|323517823|gb|ADX92204.1| site-specific tyrosine recombinase [Acinetobacter baumannii TCDC-AB0715] gi|323519204|gb|ADX93585.1| site-specific tyrosine recombinase [Acinetobacter baumannii TCDC-AB0715] Length = 310 Score = 100 bits (248), Expect = 4e-19, Method: Composition-based stats. Identities = 31/282 (10%), Positives = 88/282 (31%), Gaps = 36/282 (12%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH---TP 130 L+ ++ + + + + ++ + + + +I IR+ + R Sbjct: 7 LLKKWLDEYLLANKSNETIYTLKNSLNLFFEYT-NLALEEIEASDIRTFIAYRAQNGVGV 65 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 S+ + ++++R F + +++ + NP ++ K + ++ Sbjct: 66 STLKKNISAIRTFFHYLTKEKLINFNPAEDIKIKKSSKVLPKF---HEVTVINEVLDSNK 122 Query: 191 --------------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV- 235 + E GLR + +++++ ++ G + Sbjct: 123 NLEFERPSSTVIFKRDLALIEIAYSCGLRLEEIHSLQIENVEVKRKQVRVTGKGNKTRII 182 Query: 236 -----------ELPDGFMKLLAMTPIGKE-TFFINNDKQKMNATQFSIWFKAKATKAG-- 281 E +++ K F+ +++ Q + K AG Sbjct: 183 PLGSKAIEAYLEWLPLREEIMNKDTNQKHNYVFVTTTGAQLSRVQINKRIKNAFKLAGYP 242 Query: 282 VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 + + H +R AT + E+ G ++ + YT Sbjct: 243 IQSNPHMLRHSFATHLINNSVGIREIQEMLGHSNLNTTQIYT 284 >gi|254454307|ref|ZP_05067744.1| phage integrase [Octadecabacter antarcticus 238] gi|198268713|gb|EDY92983.1| phage integrase [Octadecabacter antarcticus 238] Length = 422 Score = 100 bits (248), Expect = 4e-19, Method: Composition-based stats. Identities = 43/256 (16%), Positives = 88/256 (34%), Gaps = 11/256 (4%) Query: 82 AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMR 141 WG + V S++ G K + ++ K TP A + +R Sbjct: 123 PAWGRMLVTEVSSYDVELLLNRVAEGRARPAKAKPNNRARKLQGSKPTPVRANRVGEVVR 182 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA--FEFL 199 +F +AV+ + NP + RP+ +T R ++E++ + + R A Sbjct: 183 KMFAYAVKWGWREDNPAMGF-RPRMETPRERYLSQEEIARLATALDRAEDTRAANIIRIC 241 Query: 200 LYSGLRCSDSCRAGVQHLQNNIFSIK----TQKTGTIITVELPDGFMKLLAMTPIG---K 252 + +G R + +A + S T K + V + D ++ Sbjct: 242 MLTGARVGEVRQARFEDFNLEHLSWTKPATTTKQRRVHRVPISDDAAVIVRQRRQAVYPG 301 Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATY 311 + +D + ++K +AG+ + H +R A++ GA+ + Sbjct: 302 CPWLFPSDTPGHPVQEVRRFWKRIQREAGIEDVRIHDLRHTFASLLVSGGASLEMIGKLL 361 Query: 312 GWKTVDQAETYTKGAD 327 G + + Y D Sbjct: 362 GHSQMQTTQRYAHLMD 377 >gi|317480894|ref|ZP_07939975.1| phage integrase [Bacteroides sp. 4_1_36] gi|316902979|gb|EFV24852.1| phage integrase [Bacteroides sp. 4_1_36] Length = 356 Score = 100 bits (248), Expect = 4e-19, Method: Composition-based stats. Identities = 41/226 (18%), Positives = 81/226 (35%), Gaps = 16/226 (7%) Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 ++ ++A LT ++ + A + N + R K + TKE++ Q Sbjct: 128 MHNGKRMMGTTANNNLTKLKCILAIAYEDGLLKENIAKKLVRAKAHGNKRQFLTKEELLQ 187 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL----QNNI-FSIKTQKTGTIITVE 236 + R A F +GLR SD R +++ I T+KT T + Sbjct: 188 LSQTPCKSDVLRRAGLFSCLTGLRLSDCIRLQWENIIKLADGGWGMDIITKKTSTAAILP 247 Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSA 294 + + ++L G F + + + +++ K +G+ K + H R A Sbjct: 248 ISEEALQL--CGERGTGQVF-----KNLTNSTVTLYLKPWIKASGIEKHITFHCFRHTFA 300 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340 T+ G + + + + Y D ++ + RIS Sbjct: 301 TLQLAEGTDIYTVSKLLTHSNLATTQVYADVVDELKR--DAAERIS 344 >gi|257898367|ref|ZP_05678020.1| phage integrase [Enterococcus faecium Com15] gi|257836279|gb|EEV61353.1| phage integrase [Enterococcus faecium Com15] Length = 378 Score = 100 bits (248), Expect = 4e-19, Method: Composition-based stats. Identities = 53/365 (14%), Positives = 117/365 (32%), Gaps = 55/365 (15%) Query: 15 RTRHGKIIYYFR--KGHGRRIRLPYPHE---STFIPAYMSALTGSTPKREY-INSPRKKP 68 R R + YYF G R ++ A L+ +Y + + + Sbjct: 6 RKRGKRWYYYFEDINDDGSRKKVEKVGGDTRPEAEAALRKVLSDIDETGQYFLGTDTRVK 65 Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESR- 126 L + + EY K +L N+ ++ + I G ++ +++ + + Sbjct: 66 QYLDFWMKEYVK----LNLKYNTYENYRFTIKNHINGYLGKKKLTDLSPALLQNFINAEF 121 Query: 127 -----KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK-----TEGIRPWTK 176 K T + L + + + + NP L V+ PK + + ++ + Sbjct: 122 KKGYSKKTMTITHSVLKNALNMAVY--PWGLIKQNPMLYVKIPKYEERPTTKKDLKIISL 179 Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK-------- 228 ED EG + Y+G+R + C ++ + +I +K Sbjct: 180 EDFDHMLEITPEGHPFYIPLNIGFYTGMRVGEVCGLTWDNVDFSNGTITVEKQMVKNDGA 239 Query: 229 --------TGTIITVELPDGFMKLLAMTP--------------IGKETFFINNDKQKMNA 266 + + T+ + + +L I D + Sbjct: 240 WVYGTPKTSSSNRTIFIGQTLLAILKKHKKQQLENRMKYGKLYIDSNAVCTKEDGGLVTP 299 Query: 267 TQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKG 325 + + + ++ + H +R AT+ + GA E+ G + +TY+ Sbjct: 300 SVVKWNTRRISNALSLSFNFHSLRHTHATLLLENGAKMKEISERLGHSRISITMDTYSHV 359 Query: 326 ADRIR 330 D++R Sbjct: 360 TDKMR 364 >gi|254450263|ref|ZP_05063700.1| phage integrase [Octadecabacter antarcticus 238] gi|198264669|gb|EDY88939.1| phage integrase [Octadecabacter antarcticus 238] Length = 315 Score = 100 bits (248), Expect = 4e-19, Method: Composition-based stats. Identities = 43/266 (16%), Positives = 82/266 (30%), Gaps = 17/266 (6%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132 L + ++ ++ G T +R+ T + Sbjct: 28 ALRQRMIEDMRIRAIGETTQKGHIRAIKHFATFLGRSPDTA-TPDELRAYQLHMTDTEVT 86 Query: 133 A---IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM-QQFKSFWSE 188 + S+R+ F +E + ++ ++ + E++ + Sbjct: 87 TSTFNTRIVSLRLFFGVTCGREEMKR----YMQFRRKPRRLPVVLSVEEIGDLLAAVPGP 142 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTIITVELPDGFMKLLA 246 G R A +GLR S+ C V + + + K G L G + LL Sbjct: 143 GLTYRAALGISYGAGLRASEVCHLKVVDIDSGRMLIHVDEGKNGKDRKAMLSPGLLDLLR 202 Query: 247 ---MTPIGKETFFINNDK-QKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300 + + F K ++ Q + F + AG+NK + H +R AT +A Sbjct: 203 EYWLEARPEGWLFPGKPKINPLSLRQLNRAFTSAKHMAGINKPATLHTLRHSFATHLLEA 262 Query: 301 GATAHELMATYGWKTVDQAETYTKGA 326 G + G + YT A Sbjct: 263 GTDVRVIQVLLGHSKLSTTARYTHVA 288 >gi|291528623|emb|CBK94209.1| Site-specific recombinase XerD [Eubacterium rectale M104/1] Length = 282 Score = 100 bits (248), Expect = 4e-19, Method: Composition-based stats. Identities = 34/268 (12%), Positives = 93/268 (34%), Gaps = 17/268 (6%) Query: 77 EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH---TPSSA 133 + ++ +L S +++Y + ++T + +R + ++K ++ Sbjct: 8 QLEEAGKIRNLKERSINCYKNYVSYFLNYMEKHP-EELTCQDVRDFLLAKKDDGLKATTL 66 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193 + +++R ++ + + ++V R + + + +++ + + + + Sbjct: 67 NLYNSAIRFFYRNVLHVLWDD----ITVPRMIIEHKLPTILSTDEIDRLLDATDD-LKYK 121 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL------PDGFMKLLAM 247 F + SG+R S+ + I + T + + Sbjct: 122 AMFATMYSSGMRVSEVIHLHYDDISRTNMQIHVRDTKNRMDRYTILSERNLALLTEYWFQ 181 Query: 248 TPIGKETFFINND-KQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAH 305 K F N Q + + + A+ AG++ + H +R AT + G Sbjct: 182 KGRPKGILFPNQFTGQYLTVSTLEQVIRRSASAAGLSGVTPHCLRHSFATHLMEQGVEQR 241 Query: 306 ELMATYGWKTVDQAETYTKGADRIRLGI 333 + A G + E Y +++ +GI Sbjct: 242 NIQALLGHRDPKSTEVYLHVSNKSLMGI 269 >gi|325267781|ref|ZP_08134431.1| site-specific tyrosine recombinase XerC [Kingella denitrificans ATCC 33394] gi|324980662|gb|EGC16324.1| site-specific tyrosine recombinase XerC [Kingella denitrificans ATCC 33394] Length = 357 Score = 100 bits (248), Expect = 4e-19, Method: Composition-based stats. Identities = 44/293 (15%), Positives = 92/293 (31%), Gaps = 18/293 (6%) Query: 49 SALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD 108 +A T P P + + +Y + + + ++ +++ Q+ + Sbjct: 38 AAKTVKMPFMPIQKQPASMSSPFFAHLPDYLREQTQLNRSAHTLAAYQRDLWQLQTLLPE 97 Query: 109 F--DYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166 + + R S+ + LT R K+ ++E +P ++ P++ Sbjct: 98 ACENPTAQDFSAALKTLSQRGLNASTLARKLTVWRQYAKFVQQKEAADASPAERLKAPRQ 157 Query: 167 KTEGIRPWTKEDMQ-----QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QN 219 R +E +Q ++ + + E SGLR S+ C + + Sbjct: 158 AQRLPRAIERETLQYLLDQAPEAGDALAVRDHAVAELFYGSGLRLSELCALNLHDIWLDE 217 Query: 220 NIFSIKTQKTGTIITVELPD----GFMKLLAMTPIGKE--TFFINNDKQKMNATQFSIWF 273 S+ K G V L LA F +++ Q + Sbjct: 218 GWVSVH-GKGGKQRHVPLTQHSIAALRAWLARRTTADSESALFTGRYGKRLTTRQIAKRL 276 Query: 274 KAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 + A + G + H +R A A + G ++ + YTK Sbjct: 277 QHWAAERGSLQTITPHMLRHSFAGHLLQASHDLRAVQDLLGHSSLSSTQIYTK 329 >gi|85708628|ref|ZP_01039694.1| tyrosine recombinase [Erythrobacter sp. NAP1] gi|85690162|gb|EAQ30165.1| tyrosine recombinase [Erythrobacter sp. NAP1] Length = 265 Score = 100 bits (248), Expect = 4e-19, Method: Composition-based stats. Identities = 46/235 (19%), Positives = 79/235 (33%), Gaps = 21/235 (8%) Query: 110 DYRKITTKHIRSGVESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINP-CLSVERPK 165 D + +RS + SR+ SSA + L++++ L +A R E +P + P+ Sbjct: 12 DVAAVEAHDLRSHLASRRAQGLSNSSAARELSALKALIAYA-RSEAGDPDPSAPRLCGPR 70 Query: 166 RKTEGIRPWTKEDMQQFKSFWS-------EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ 218 K RP T ++ G++ R + SGLR +++ + Sbjct: 71 LKKGLPRPVTPDEAVNIADLIDGTASEDWIGARDRAVLLLMYGSGLRIAEALSLEGRDAV 130 Query: 219 NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIG-------KETFFINNDKQKMNATQFSI 271 T K G V + + +A E F ++A Sbjct: 131 LGETLQVTGKGGKQRLVPILPITREAVAEYANACPWPLPTHEPLFRGAKGGPLSAGMVQK 190 Query: 272 WFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 G+ + H +R AT AGA L G ++ + YTK Sbjct: 191 AMARARRALGLPDTATPHALRHSFATHLLGAGADLRSLQELLGHASLGSTQIYTK 245 >gi|213857670|ref|ZP_03384641.1| shufflon-specific DNA recombinase [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 365 Score = 100 bits (248), Expect = 4e-19, Method: Composition-based stats. Identities = 42/279 (15%), Positives = 92/279 (32%), Gaps = 23/279 (8%) Query: 62 NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121 R K +L + +Y + + F + +ITT I S Sbjct: 3 RPQRIKKMSLSKALDKYYATVSVHKRGH--QQEFYRVRVIQRHPLAEKMMDEITTVDIAS 60 Query: 122 GVESRKHTPSSAIQF----------LTSMRVLFKWA-VRQEYVAINPCLSVERPKRKTEG 170 + R ++ L + L+ A V NP V +PK Sbjct: 61 YRDDRLSQVNTRTGRCISGNTVRLELALLSSLYNLASVEWGTCRTNPVEMVRKPKISGGR 120 Query: 171 IRPWTKEDMQQFKSFWSEGSQP-RLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQ 227 R T ++ ++ ++ E + F + + +R + +H+ + + Sbjct: 121 DRRLTSQEERRLSRYFQEQNPALHAIFHLAIETAMRQGEILSLRWEHIDLQHGVAHLPMT 180 Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSA 286 K G+ V L LL T ++ + +++ F ++ + + + Sbjct: 181 KNGSSRDVPLSRKARHLL-----QGMTVALSGNVFHYSSSGFKSAWRVALQRLNIVDLHF 235 Query: 287 HGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTK 324 H +R + + + G E+ A G ++++ + YT Sbjct: 236 HDLRHEAISRLFELGTLNVMEVAAISGHRSLNMLKRYTH 274 >gi|167464469|ref|ZP_02329558.1| prophage LambdaBa04, site-specific recombinase, phage integrase family protein [Paenibacillus larvae subsp. larvae BRL-230010] Length = 379 Score = 100 bits (248), Expect = 4e-19, Method: Composition-based stats. Identities = 57/340 (16%), Positives = 115/340 (33%), Gaps = 41/340 (12%) Query: 23 YYFR-----KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT--TLKWLI 75 +Y+R G+R + F + + E +N +PT T+ + Sbjct: 25 WYYRYDITDPKTGKRKQKEVGG---FRTKEEAQEAAVRIQSELLNGTYVEPTKLTVGEFL 81 Query: 76 SEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKH--TPSS 132 ++ ++ +A N+ ++ + I G +T H++ S + Sbjct: 82 LDFVENTLKYEVAPNTYEQRMTFVKNHIQPNIGSLRLTDLTPNHVQKFYNSLREHYGAGY 141 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK--RKTEGIRPWTKEDMQQFKSFWSEGS 190 + F AV+ ++ NP V++P RK ++ WT ED ++F + +G Sbjct: 142 VQNIGNLLSKAFTQAVKWNMISRNPIPLVKKPSLSRKNTKMKTWTVEDQRKFLDYAKDGP 201 Query: 191 QPR-LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-----------------GTI 232 + + F L SG+R + + + ++T I Sbjct: 202 KLYYVIFLLALTSGMRKGELLGLIWDDVDTKKGIVSIKRTIVYAQRKLYLKDMPKTESAI 261 Query: 233 ITVELPDG----FMKLLAMTPIGKETFFINNDKQK--MNATQFSIWFKAKATKAGVNK-S 285 T++LP+ + P + + K K + AGV + + Sbjct: 262 RTIQLPEPTIKVMKQWKLECPANELNLLFPSPKTKGILYPNSLDKQLAKTIKGAGVPEIT 321 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324 HG+R AT + + G T+ +TY+ Sbjct: 322 MHGLRHTFATTLLGSNVNPKIVQEMLGHATIKTTMDTYSH 361 >gi|152983145|ref|YP_001352184.1| phage integrase family site specific recombinase [Janthinobacterium sp. Marseille] gi|151283222|gb|ABR91632.1| site-specific recombinase, phage integrase family [Janthinobacterium sp. Marseille] Length = 328 Score = 100 bits (248), Expect = 4e-19, Method: Composition-based stats. Identities = 39/267 (14%), Positives = 81/267 (30%), Gaps = 21/267 (7%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129 T+ + Y + L + ++ + + R Sbjct: 60 TITAALDRYAR--EVTPLKKGWKQELVRLRRWQSNPLAQLTMPQLRAAELAKYRDQRLSD 117 Query: 130 PSSAIQF---LTSMRVLFKWAV-RQEY-VAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 A L + +++ A+ V INP + +PK R T+ + Sbjct: 118 GLGANTVRLELALISHVYEVAIKDWGLEVLINPVRIIRKPKLPRGRERRLTEGEEDLLLE 177 Query: 185 FWSE--GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN--IFSIKTQKTGTIITVELPDG 240 + + + RL L + +R + +++ + + + K G V L Sbjct: 178 YCKKKGAALLRLVIILALETAMRRGEIASLHTENIDLDSRLIFLDQTKNGDKRKVPLSRR 237 Query: 241 FMKLLAMTPIGKETFFINNDKQ--KMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATIS 297 K L E + + ++ S F G+ + H +R + + Sbjct: 238 AQKEL-------ENYLCGKHGELVPLHPDNISGAFSQACKVCGISGLTLHDLRHEATSRL 290 Query: 298 ADAGATAHELMATYGWKTVDQAETYTK 324 + G E+ A G KT+ + YT Sbjct: 291 FEKGFNMMEVAAITGHKTLTMLKRYTH 317 >gi|224477023|ref|YP_002634629.1| putative integrase [Staphylococcus carnosus subsp. carnosus TM300] gi|222421630|emb|CAL28444.1| putative integrase [Staphylococcus carnosus subsp. carnosus TM300] Length = 390 Score = 100 bits (248), Expect = 4e-19, Method: Composition-based stats. Identities = 54/346 (15%), Positives = 112/346 (32%), Gaps = 53/346 (15%) Query: 48 MSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG 107 + + + +P T ++ E+ V+S + E G Sbjct: 44 HAEMVERQIRNNEYIAP--SAHTFSYIADEFINHYR-KDAKVSSVRAREKAIKHAKVAFG 100 Query: 108 DFDYRKITTKHIRSGVESRKHTPSSA--IQFLTSMRVLFKWAVRQEYVAINPCLSVERPK 165 D + IT + V+ S + S ++FK+A+ + P ++RPK Sbjct: 101 DKAIQSITKHQYQQFVDDISTRFSKNYVDSIVASTNLVFKYALDMNLLKKLPNEGIKRPK 160 Query: 166 RK---TEGIRP------WTKEDMQQFKSFWSEGSQPRLAFEF---LLYSGLRCSDSCRAG 213 +K E KE++ +F + P +FE + YSG R + Sbjct: 161 QKVTVEELEHTELKQKFLEKEELFEFLNVAKNDHPPLNSFELFTLMAYSGCRAGEILALK 220 Query: 214 VQHLQNNIFSIKTQKTG--------------------------TIITVELPDGFM----- 242 + + ++I KT ++L + Sbjct: 221 WSDVDFDNYTINITKTYYNPNNNKKNYQILTPKTNASIGKLSIDPHVIKLLKDYKVNVQD 280 Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300 K + F +N+ + + S W ++ +K ++K + H R + +A Sbjct: 281 KWKNELYVDNNFVFTDNNGYPLVIKKLSQWIQSIMSKTNIDKNITTHSFRYTHCALLIEA 340 Query: 301 GATAHELMATYGWKTVDQAE-TYTKGADRIRLGIKNSRRISSVVDS 345 G E+ K ++ Y K D + S++ S ++++ Sbjct: 341 GVHIKEIQERLRHKDINTTMNIYAKITDSYKK--DASQKFSQLMEN 384 >gi|120603607|ref|YP_968007.1| phage integrase family protein [Desulfovibrio vulgaris DP4] gi|120563836|gb|ABM29580.1| phage integrase family protein [Desulfovibrio vulgaris DP4] Length = 417 Score = 100 bits (248), Expect = 4e-19, Method: Composition-based stats. Identities = 54/354 (15%), Positives = 112/354 (31%), Gaps = 33/354 (9%) Query: 4 SLRLPPFVTKERTRHG-----KIIY--YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTP 56 + P +E R G ++ Y Y R G ++ PA + + Sbjct: 40 KTQYPGVYYREAQRIGGTGTERVYYALYKRDGRLIETKIGRQFSDDLTPAKAALIRAQLI 99 Query: 57 KREYINSPR-------KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF 109 + P T+ L EY++ + + FE + + + Sbjct: 100 EGRRSTRKELRQAEMDNAPWTILTLWEEYKRRKPNLKGIITDQNRFEVHLRHL-QNMKPE 158 Query: 110 DYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVA-INPCLSVERPKRKT 168 + +++ + + P + + +R + + ++ + C E P Sbjct: 159 EITTTLVDNLQLSLANSGKKPGTIKNVIELLRRIISFGEKKGLITPSQICAHFEMPILNN 218 Query: 169 EGIRPWTKEDMQQFKSFWSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSI 224 + T E + + + LY+G+R + +H+ +I Sbjct: 219 QKTEDLTPEQLNNLIAAIESTKHKKAGQMMLLALYTGMRRGEIFNLKWEHIDWHRGFINI 278 Query: 225 KTQ------KTGTIITVELPDGFMKLLAMTPIGKETF-FINNDKQKMNATQFSIWFKAKA 277 + K+G + L D +LL P G+ + F ++ A Sbjct: 279 VGRDDGLGAKSGQCERIPLNDLARQLLLSVPKGQSRYVFPGKSGGRLV--DIRKQADALK 336 Query: 278 TKAGVNKS---AHGVRKFSATISADAGA-TAHELMATYGWKTVDQAETYTKGAD 327 +AG+ S HG+R A++ A G + +EL K+ + Y D Sbjct: 337 KEAGLPDSFRPFHGLRHVYASLLASTGKVSMYELQKLMTHKSAAMTQRYAHLRD 390 >gi|42526718|ref|NP_971816.1| phage integrase family site specific recombinase [Treponema denticola ATCC 35405] gi|81412439|sp|Q73NE4|XERC_TREDE RecName: Full=Tyrosine recombinase xerC gi|41817033|gb|AAS11727.1| site-specific recombinase, phage integrase family [Treponema denticola ATCC 35405] Length = 305 Score = 100 bits (248), Expect = 4e-19, Method: Composition-based stats. Identities = 47/284 (16%), Positives = 94/284 (33%), Gaps = 36/284 (12%) Query: 76 SEYRK-SAHWGSLAVNSRISFES---YFDQIIRKSGDFDYRKITTKHIRSGVESRKHT-- 129 Y SA + S+++ F++ +++ D + ++ IR + Sbjct: 6 ESYLTYSAGVRQFTKATIDSYKNDLIIFEEWLKEL-DLNIFELKASDIRIFIAELADKKI 64 Query: 130 -PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 P+S + ++++R +K+A+R +NP SV K + + Q+F S Sbjct: 65 APASINRMMSTLRGFYKYALRFNLTKMNPISSVRNLKLAQKLPVFMFPKQAQEFCRLPSN 124 Query: 189 G-----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIITVELPDGFM 242 ++ F L +G R S+ ++ L + ++I K V + Sbjct: 125 AGILWETRDAALFASLYSTGCRVSELAGLDIKDLDKTLSYAIVFGKGKKERKVFFAEFAK 184 Query: 243 KLLA--------------------MTPIGKETFFINNDKQKMNATQFSIWFKAKATK--A 280 + L ++T FIN Q + + Sbjct: 185 EYLREYLKERSDLVEKFKGQVQKDGKGKIRDTLFINQKAQPLTSRGIRYIIDRYVELSPE 244 Query: 281 GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 + S H R A+ GA + G ++V + YT Sbjct: 245 LKHLSPHAFRHSFASTLITRGADIRVVQELLGHESVSTTQRYTH 288 >gi|323139352|ref|ZP_08074404.1| integrase family protein [Methylocystis sp. ATCC 49242] gi|322395418|gb|EFX97967.1| integrase family protein [Methylocystis sp. ATCC 49242] Length = 317 Score = 100 bits (248), Expect = 4e-19, Method: Composition-based stats. Identities = 51/273 (18%), Positives = 87/273 (31%), Gaps = 30/273 (10%) Query: 89 VNSRISFESY---FDQIIRKSGDFDYRKITTKHIRSGVES--RKHTPSSAIQFLTSMRVL 143 ++R ++ F + G I HI + VE+ R H+ +A Q L ++R+L Sbjct: 37 PHTRRAYGRAIGDFLAWCEQRGLASIVDIEPLHIGAYVEAMTRSHSAPTAKQRLAAIRML 96 Query: 144 FKWAVRQEYVAINPCLSVERPKR--KTEGIRPWTKEDMQQFKS----FWSEGSQPRLAFE 197 F W V + V NP SV PK K + + G + R Sbjct: 97 FDWLVTGQIVPTNPAASVRGPKHVVKVGKTPVLDPAEARALLDSIDVTAPVGLRDRALIG 156 Query: 198 FLLYSGLRCSDSCRAGVQH--LQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGKE- 253 ++YS R + V+ +QN ++ +K G + L G Sbjct: 157 LMIYSFARVGAALAMKVEDVYVQNRRLWVRLHEKGGKRHEMPCHHNLEAYLHAYIDGCGL 216 Query: 254 -----TFFINNDKQKMNATQFS--------IWFKAKATKAGVNKSA--HGVRKFSATISA 298 + A F+ + +A AG+ H R T Sbjct: 217 ASDPKAPLFRTIGRGAGALTFTPLPQANAYAMIRRRAVAAGIATKVGNHSFRATGITAYL 276 Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 G T + + + + Y + D + L Sbjct: 277 KNGGTLEKAASMANHASTRTTQLYDRRRDEMSL 309 >gi|300869256|ref|ZP_07113849.1| Integrase family protein [Oscillatoria sp. PCC 6506] gi|300332747|emb|CBN59047.1| Integrase family protein [Oscillatoria sp. PCC 6506] Length = 281 Score = 100 bits (248), Expect = 4e-19, Method: Composition-based stats. Identities = 44/253 (17%), Positives = 92/253 (36%), Gaps = 14/253 (5%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSSAIQFLTSMRVL 143 + N+ S+ + +++ + +T I++ + + + S + +++ L Sbjct: 19 HGRSKNTAGSYRLHTSRLLSFVDNKPLSSVTLADIQAWELTLSNLSSGSQRTAIFAIKSL 78 Query: 144 FKWAVRQEYVAINPCLSVE-RPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS 202 + + + +N L V R + T R ++ ++Q + ++ + R+ L Sbjct: 79 LSFGHKLGVLPVNVGLLVRSRGVKDTLSERILSEAEVQAMIASETDP-RNRVMLRLLYSG 137 Query: 203 GLRCSDSCRAGVQHLQ---NNIFSIKTQKTGTIITVELPDG-----FMKLLAMTPIGKET 254 GLR S+ C + L+ + G V L ++L P Sbjct: 138 GLRVSELCGLKWKDLKERPGAGGQVTIFGKGNKTRVVLLPPGIWGGLIQLGPGQP-DDPV 196 Query: 255 FFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYG 312 F ++ + KA A +AG+ S H +R A+ S D GA H + T G Sbjct: 197 FHSYLGGGHLHRSHLWRIVKAAAIRAGISDKVSPHWLRHAHASHSLDRGAPIHLVQQTLG 256 Query: 313 WKTVDQAETYTKG 325 ++ Y Sbjct: 257 HSSLATITRYLHA 269 >gi|118466667|ref|YP_879975.1| site-specific recombinase, phage integrase family protein [Mycobacterium avium 104] gi|118167954|gb|ABK68851.1| site-specific recombinase, phage integrase family protein [Mycobacterium avium 104] Length = 370 Score = 100 bits (248), Expect = 4e-19, Method: Composition-based stats. Identities = 50/318 (15%), Positives = 102/318 (32%), Gaps = 52/318 (16%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV------ 123 T++ ++ H + +R ++ + + GD +++T H+ V Sbjct: 53 TVEQACRDWLAGMH--DIEPTTRAAYTHALKPLRERHGDMAVQQLTKSHLDQLVTDLTTG 110 Query: 124 ----ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179 + R T +S L + + VRQ +A + V+R KR + +T+E++ Sbjct: 111 KLDGQKRAWTANSINPMLNLVSRVLADLVRQGALARDVAAFVKRLKRPESKLTTFTEEEV 170 Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-------------------NN 220 +Q E + A+ L GLR + C +Q Sbjct: 171 RQLLK-HVENDRLGHAWHLALA-GLRRGEICGLEWADVQLDDDRDAGTLTVAHNRVSVGG 228 Query: 221 IFSIKTQKT-GTIITVELPDGFMKLLAMTPI---------------GKETFFINNDKQKM 264 K KT + T+ L ++L +++ + Sbjct: 229 RVHEKAPKTVRSARTLPLTPTLARMLKRAKALQAAERLRLGPHYLGDGVRVVVDDSGRPY 288 Query: 265 NATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETY 322 + S +++ A V + H R A++ G + A G TY Sbjct: 289 HPDTLSDFWRELCGDAKVRRIRLHDARHSCASLMHAQGVPIAVISAWLGHADPAFTMRTY 348 Query: 323 TKGA-DRIRLGIKNSRRI 339 D + L + +++ Sbjct: 349 VHAENDALNLAAASLQKV 366 >gi|125974940|ref|YP_001038850.1| phage integrase [Clostridium thermocellum ATCC 27405] gi|125715165|gb|ABN53657.1| phage integrase [Clostridium thermocellum ATCC 27405] Length = 370 Score = 100 bits (248), Expect = 4e-19, Method: Composition-based stats. Identities = 55/311 (17%), Positives = 103/311 (33%), Gaps = 36/311 (11%) Query: 49 SALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD 108 AL K E T+ ++ + + ++A ++ + + I G Sbjct: 42 KALADIIAKIEKGEYFEPANMTVAEYLNYWLDTYPKNNVAPSTYRRYTEFAAHIKTHIGG 101 Query: 109 FDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVL---FKWAVRQEYVAINPCLSVERPK 165 K+ HI+S S S L R+L K AV + + NP +V P+ Sbjct: 102 IMMPKLKPAHIQSFYSSLLEKNLSKSTVLKIHRMLHLALKHAVNWQIIISNPTDAVTPPR 161 Query: 166 RKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ------- 218 +R W E ++F +E + + L +G+R + C +++ Sbjct: 162 PDKVEMRVWDVETAKKFLDDIAE-TPIYIPVLLALQTGMRAGEICGLKWENIDLPRGFLM 220 Query: 219 --------NNIFSIKTQKT-GTIITVELPD----GFMK---------LLAMTPIGKETFF 256 N + ++K KT ++ T+ L D + LL + + F Sbjct: 221 VKYALQRINGVLTLKEPKTAKSMRTIALMDYTVQALKEHKRKQNKTKLLMGSAYNDQDFV 280 Query: 257 IN-NDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWK 314 +D + + F G K H +R AT+ G + G Sbjct: 281 CAWDDGRPYDPHYLGQKFTKLIKLLGYPKIRFHDLRHTHATMLLQQGINPKIVSERLGHS 340 Query: 315 TVDQA-ETYTK 324 + +TY+ Sbjct: 341 QISVTLDTYSH 351 >gi|310819252|ref|YP_003951610.1| phage integrase family protein [Stigmatella aurantiaca DW4/3-1] gi|309392324|gb|ADO69783.1| Phage integrase family protein [Stigmatella aurantiaca DW4/3-1] Length = 395 Score = 100 bits (248), Expect = 4e-19, Method: Composition-based stats. Identities = 57/379 (15%), Positives = 102/379 (26%), Gaps = 62/379 (16%) Query: 21 IIYYFRKGHGRRIRLPYPHEST-FIPAY-----MSALTGSTPKREYINSPRKKPTTLKWL 74 + Y G RIR P + Y + LTG+ K TL Sbjct: 23 VKYQHPSGRVERIRKASPINTRRGAEEYERQIRHALLTGTFGKENGAGRVL----TLGEF 78 Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA- 133 + + + + + + D +I G+ I I + + PS A Sbjct: 79 VPRFLTYSENNNKHSSVVTKRQILDDHLIPAFGNMPLDAIGPAEIEDFKAAMRKKPSGAR 138 Query: 134 ----------------------------IQFLTSMRVLFKWAVRQEYVAINPCLSVERPK 165 LT + L A Q + P V+ K Sbjct: 139 ARKEAPTRAALLKRKGSGAVKLLSLKSINNVLTVLHKLLALAQEQGVLQHVP--RVKLFK 196 Query: 166 RKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK 225 + E+ ++ + + R L +GLR + L + Sbjct: 197 TDKPAFDFLSFEEAERMSNAAEP--EWRTLILVALKTGLRLGELIGLQWADLDLQRGKLN 254 Query: 226 TQ-----------KTGTIITVELPDGFMKLLAM-TPIGKETFFINNDKQKMNATQFSIWF 273 + K G TV+LP ++ L + F D + + A Sbjct: 255 VRRTIWRGVVGLPKGGRERTVDLPTSAVEALKAHRHLCGPYVFCQTDGRPLTAGMTKHPL 314 Query: 274 KAKATKAGVNK-----SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 +AGV++ H +R + A G + G T++ Y + Sbjct: 315 LRALRRAGVSRPEGSIGWHDLRHTYGSHLAMRGVALKVIQELMGHATIEMTMRYAHLSPE 374 Query: 329 IRLGIKNSRRISSVVDSDD 347 R + + + Sbjct: 375 AR--ESAVQELDRPIPQPR 391 >gi|52842271|ref|YP_096070.1| prophage dlp12 integrase [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52629382|gb|AAU28123.1| Prophage dlp12 integrase [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 334 Score = 100 bits (248), Expect = 4e-19, Method: Composition-based stats. Identities = 47/327 (14%), Positives = 106/327 (32%), Gaps = 20/327 (6%) Query: 26 RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWG 85 R R ++ F ++ L ++ P++K + + + + + Sbjct: 20 RIRRSTRTKVKQ-QAQQFHDNFLQDLW----SNKHTKLPQQK--SWVDAVVRWLEESA-H 71 Query: 86 SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFK 145 ++ + ++ D + + + + I E TP++ + L +R + Sbjct: 72 KRSLVTDKFHLAFLDPYLGQKTLDEINAELIEFIAQEKERTNVTPTTVNRMLEIIRAILN 131 Query: 146 WA-VRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGL 204 A +++ P K + + IR ++ + + AF +GL Sbjct: 132 KAHKEWQWINTMP--LFRMRKVENKRIRWLSRGQANKLIQELPNHLKDMAAFTLA--TGL 187 Query: 205 RCSDSCRAGVQHLQN----NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINND 260 R S+ + + + KT I V L + ++ TF Sbjct: 188 RQSNVTQLQWSEVDLIRKHALIHPDQSKTKKAIPVPLNSQAIVIIEKQVGLHPTFVFTYF 247 Query: 261 KQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319 + + W K +AG+ + H +R A+ G + EL GW + Sbjct: 248 GKPVTRCNNHAWQK-ALIRAGIKDFRWHDLRHTWASWHVQNGTSLQELQQLGGWSEYEMV 306 Query: 320 ETYTK-GADRIRLGIKNSRRISSVVDS 345 Y +D +++ + + S S Sbjct: 307 LRYAHLSSDHLKVAAERITKNSGTFSS 333 >gi|283769290|ref|ZP_06342191.1| site-specific recombinase, phage integrase family [Bulleidia extructa W1219] gi|283104100|gb|EFC05482.1| site-specific recombinase, phage integrase family [Bulleidia extructa W1219] Length = 327 Score = 100 bits (248), Expect = 4e-19, Method: Composition-based stats. Identities = 38/277 (13%), Positives = 96/277 (34%), Gaps = 14/277 (5%) Query: 59 EYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH 118 E I +++ + + + + + + S +++ + ++ + D + I T Sbjct: 37 EVIEKQQQEKNSEQNFVELFLSAKRIEGCSEKSLKYYKATIEAMLDEL-KKDVKHIVTDD 95 Query: 119 IRSGV----ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174 IR + + +K + + + F W ++Y+ +P + + K T + Sbjct: 96 IRGYLTDYQKKKKSSKVTIDNIRRILSSFFSWLEDEDYILKSPVRRIHKVKTGTNIKETY 155 Query: 175 TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT 234 + E ++ + +E + + L +G+R + + N G+ Sbjct: 156 SDEALELMRDNCTE-LRDLAIIDMLASTGMRVGEMVLLNRNDIDFNERECIVFGKGSKER 214 Query: 235 VELPDG-----FMKLLAMTPIGKETFFIN--NDKQKMNATQFSIWFKAKATKAGVNK-SA 286 V D L F++ + +++ + + + G+ K Sbjct: 215 VVYFDARTKIHLQNYLGSRTDDNPALFVSLKSPHERLKIGGVEVRLREFGKQLGLQKVHP 274 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 H R+ AT++ D G +L G + +D Y Sbjct: 275 HKFRRTLATMAIDKGMPIEQLQQLLGHRKIDTTLQYA 311 >gi|29345643|ref|NP_809146.1| integrase [Bacteroides thetaiotaomicron VPI-5482] gi|29337535|gb|AAO75340.1| integrase [Bacteroides thetaiotaomicron VPI-5482] Length = 373 Score = 100 bits (248), Expect = 4e-19, Method: Composition-based stats. Identities = 49/231 (21%), Positives = 90/231 (38%), Gaps = 13/231 (5%) Query: 110 DYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169 +R+ + ++RK +SA + ++ R A R + NP +ER + Sbjct: 139 RFREYLLTAPQGLHKNRKLHINSAANYWSTFRASIHTAYRDRKIKENPNGFLERIETIPT 198 Query: 170 GIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIK 225 +++++ + S + AF F + LR SD + + + + + + Sbjct: 199 DKEHLSQDEVIRLASTPCSAPALKRAFLFSCLTALRKSDIKKLTWEEIQPYGSDGVMYVT 258 Query: 226 T--QKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283 T QKT I+ + + ++L+ +P + F + K M W K AG+ Sbjct: 259 TRMQKTKDIVHNPISEEALELIGYSPDKRGKVFP-DFKDSMTQAPLKNWLKD----AGIT 313 Query: 284 K--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 K S H R A + DAG + + G K V E Y K +D + Sbjct: 314 KHISYHCSRHSFACLQLDAGTSIAVVQRYLGHKNVATTEVYAKISDAQKRA 364 >gi|218442312|ref|YP_002380638.1| integrase [Cyanothece sp. PCC 7424] gi|218175416|gb|ACK74145.1| integrase family protein [Cyanothece sp. PCC 7424] Length = 313 Score = 100 bits (248), Expect = 4e-19, Method: Composition-based stats. Identities = 39/253 (15%), Positives = 88/253 (34%), Gaps = 25/253 (9%) Query: 109 FDYRKITTKHIRSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVA-INPCLSVERPK 165 ++ ++ +H + K ++A + L +++ + AVR + + + +V+ PK Sbjct: 59 LNWARLRYQHTAAIRAIFKERYCATTANKMLCALKRVLAEAVRLDLMEATDYAKAVDFPK 118 Query: 166 RKTEGI---RPWTKEDMQQFKSFW-----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL 217 K + R + +++ G + L +GLR ++ ++ Sbjct: 119 IKGKKKLRGRALSGDEISALIEVCRQDESPLGVRDAAIIAILRGTGLRRAELAALELRDF 178 Query: 218 --QNNIFSIKTQKTGTIITVELP----DGFMKLLAMTPIGKETFFI------NNDKQKMN 265 + ++ K TV LP +A+ + + ++ Sbjct: 179 IADGGVLEVREGKGDKDRTVYLPHNVISYVNDWIAVRGDAPGALLCPIRKGGRIEGRHLH 238 Query: 266 ATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY-T 323 K +AT+AGV S H R+ + DAG + G + + Y Sbjct: 239 PDAVLKIVKKRATQAGVESFSPHDFRRTFCSDLLDAGVDIVTVQKLAGHASPETTAKYDR 298 Query: 324 KGADRIRLGIKNS 336 +G + R ++ Sbjct: 299 RGEETKRKAVQML 311 >gi|188575133|ref|YP_001912062.1| site-specific tyrosine recombinase XerC [Xanthomonas oryzae pv. oryzae PXO99A] gi|188519585|gb|ACD57530.1| tyrosine recombinase XerC [Xanthomonas oryzae pv. oryzae PXO99A] Length = 305 Score = 100 bits (248), Expect = 4e-19, Method: Composition-based stats. Identities = 39/267 (14%), Positives = 90/267 (33%), Gaps = 27/267 (10%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDF-------------DYRKITTKHIRSGV---ESRKH 128 ++ ++ ++ ++ +G+ D ++ + H+R V R Sbjct: 15 RQVSAHTLDAYRRDLAALVAWTGERNAEDGAQQTATPVDSAQLDSAHLRQFVAAEHRRGL 74 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF--- 185 +P S + L++ R + W ++ +A +P ++ PK + + + ++ + Sbjct: 75 SPKSLQRRLSACRSYYAWLLKHGRIAASPAAALRAPKAQRKLPQVLDADEAVRLVEVPTD 134 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKL 244 G + R E SGLR S+ C + L ++ + K V + + Sbjct: 135 APLGLRDRALLELFYSSGLRLSELCALRWRDLDLDSGLVMVLGKGSKQRLVPVGSHAIAA 194 Query: 245 LAM-----TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATIS 297 L F ++ I K A + G+ + H +R A+ Sbjct: 195 LRQWRRDSGASADAHVFPGRTGGAISQRAVQIRIKQLAVRQGMFKDVHPHMLRHSFASHI 254 Query: 298 ADAGATAHELMATYGWKTVDQAETYTK 324 ++ + G + + YT Sbjct: 255 LESSGDLRGVQELLGHSDIATTQIYTH 281 >gi|52079825|ref|YP_078616.1| lambda integrase-like protein(phage related) [Bacillus licheniformis ATCC 14580] gi|52785195|ref|YP_091024.1| hypothetical protein BLi01428 [Bacillus licheniformis ATCC 14580] gi|52003036|gb|AAU22978.1| Lambda integrase-like protein(phage related) [Bacillus licheniformis ATCC 14580] gi|52347697|gb|AAU40331.1| putative protein [Bacillus licheniformis ATCC 14580] Length = 379 Score = 100 bits (248), Expect = 4e-19, Method: Composition-based stats. Identities = 51/296 (17%), Positives = 102/296 (34%), Gaps = 42/296 (14%) Query: 70 TLKWLISEYRK-SAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH 128 T + + E+ + + R ++ I+ G + IT + + + Sbjct: 66 TFEDVFKEWWDVHSKTIKRSTRYRK-LSNFKKHILPHFGKLKIKDITRAYCQKVINLIAQ 124 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT-------EGIRPWTKEDMQQ 181 S ++FK+A+R EY+ NP V PK++ E W K++++ Sbjct: 125 DIDSVQNVKIQANLVFKYALRMEYITKNPMEFVVIPKKEENFLSQEEEKRNFWEKDEIKT 184 Query: 182 F--KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ----------------NNIFS 223 F K+ Q + F L+++G+R + + + Sbjct: 185 FLEKAHSQLAPQDYVMFYVLIFTGMRKGELIALEWKDVDLKEKTINIKQTMFFENGKEVI 244 Query: 224 IKTQKTGTIITVELPDGFMKLLAMTPIG-------------KETFFINNDKQKMNATQFS 270 T+K + + + D ++L + I D + + + Sbjct: 245 QTTKKYHSKRIITIDDQTAQILKKWRTQQKEMLLSNGITSEAKYVLIRGDMRPLRLAYPN 304 Query: 271 IWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTK 324 TK +++ + HG R A+I +AGA+ E+ A G K + YT Sbjct: 305 DLLNRMITKNKLHRITIHGFRHSHASILFEAGASIKEVQARLGHKEIQTTMNIYTH 360 >gi|310825725|ref|YP_003958082.1| phage integrase family site specific recombinase [Eubacterium limosum KIST612] gi|308737459|gb|ADO35119.1| phage integrase family site specific recombinase [Eubacterium limosum KIST612] Length = 412 Score = 100 bits (248), Expect = 4e-19, Method: Composition-based stats. Identities = 52/307 (16%), Positives = 99/307 (32%), Gaps = 46/307 (14%) Query: 69 TTLKWLISEYRK-SAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV---- 123 TTL+ + ++ + + A + + I+ + GDF +T ++ + Sbjct: 95 TTLRQCLVQWLEEHKKFSVKASSYTRYCSIVYKHIVPQLGDFPVADVTAAVVQDYIHYLR 154 Query: 124 -ESRKHT---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179 ++ KH PS+ L + F+ + E V NPC +V P + + + + Sbjct: 155 TDANKHKGLAPSTIKIHLVLLSSFFEKMIELEMVQNNPCEAVRIPPSQKKKPNYLKQNEY 214 Query: 180 QQFKSFWSEGSQPRLAFEFLLY--SGLRCSDSCRAGVQHLQNN--IFSIK---------- 225 Q+ + + + A LL +G+R + + ++ Sbjct: 215 QKLEKVLEDKICDKRARAILLALKTGIRLGELAALRWTDIDLQSKTIHVRHSIQRVKAKS 274 Query: 226 TQKTGTII------------TVELPDGFMKLLA---------MTPIGKETFFINNDKQKM 264 K T I + + DG LL + F N + Sbjct: 275 PGKNKTEIVFGQTKSVCSQRDIPMNDGIYTLLYSYQKVLKKSGIFTEESFVFSNRQGSYL 334 Query: 265 NATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETY 322 + + +F KAG+ + H +R ATI+A L G T + Y Sbjct: 335 DPRAYQNYFSKLLKKAGIRCVNFHALRHTFATIAASKNMQISTLSRILGHSTPTITLQIY 394 Query: 323 TKGADRI 329 D Sbjct: 395 VHAVDEQ 401 >gi|148360267|ref|YP_001251474.1| integrase [Legionella pneumophila str. Corby] gi|296106689|ref|YP_003618389.1| phage integrase-like protein [Legionella pneumophila 2300/99 Alcoy] gi|148282040|gb|ABQ56128.1| integrase, phage related [Legionella pneumophila str. Corby] gi|295648590|gb|ADG24437.1| phage integrase-like protein [Legionella pneumophila 2300/99 Alcoy] Length = 393 Score = 100 bits (248), Expect = 4e-19, Method: Composition-based stats. Identities = 65/361 (18%), Positives = 126/361 (34%), Gaps = 33/361 (9%) Query: 19 GKIIYYFR---KGHGRRIRL-PYP-HESTFIPAYMSALT-----GSTPKREYINSPRKKP 68 G +++R G +++ L YP Y++ G P K+ Sbjct: 34 GNKSWFYRFSMNGKRQKMTLGKYPAISLKQAREYLAKAQSLKEQGINPIENTKLEKLKED 93 Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--R 126 T LI + ++ + I ++ +II GD K+ TK I ++ + Sbjct: 94 NTFSKLIQSWYENYAVKNRKQPRPIKYQ-IDSEIIPLLGDTVLDKLQTKDITIALDKIVQ 152 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV---ERPKRKTEGIRPWTKEDMQQFK 183 + P A + L++++ + +AV + Y+ NP ++ + + R + E+++ Sbjct: 153 RGAPIHANRILSTIKQVLNYAVSRGYIQYNPATNIRSRDIGGIEKPRERVLSPEEIRIIW 212 Query: 184 SFWSEG-----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT----QKTGTIIT 234 F RLA + ++ +G+R + A K G + Sbjct: 213 KFLESDKSQMSESARLAIKVIILTGVRTGEIRLAQWHQFDFEQSLWTIPPEHSKGGITVK 272 Query: 235 VELPDGFMKLLAMTPIGKETFFINNDKQ---KMNATQFSIWFKAKATKAGVN-KSAHGVR 290 + L + KLL + F+ M+ K T+ GV +AH +R Sbjct: 273 IHLSELTKKLLLQFKEQSVSPFVIPGITIDVPMSKDALPRAIKRIQTRVGVPEWTAHDLR 332 Query: 291 KFSATISADAGA-TAHELMATYGWKTVDQAETYTKGA---DRIRLGIKNSRRISSVVDSD 346 + AT ++ + G K TY K R + I+ ++ S Sbjct: 333 RTFATQLGESLNIDPVVIEKCLGHKMPRIMATYNKNEMLPQRKEALDAWASHIAKLISSK 392 Query: 347 D 347 D Sbjct: 393 D 393 >gi|299132835|ref|ZP_07026030.1| tyrosine recombinase XerD [Afipia sp. 1NLS2] gi|298592972|gb|EFI53172.1| tyrosine recombinase XerD [Afipia sp. 1NLS2] Length = 319 Score = 100 bits (248), Expect = 4e-19, Method: Composition-based stats. Identities = 47/281 (16%), Positives = 90/281 (32%), Gaps = 40/281 (14%) Query: 89 VNSRISFESYFDQIIRKSG----DFDYRKITT-KHIRSGVESRKHTPSSAIQFLTSMRVL 143 N+ ++ S + + DF + + + ++ R SS + L+SMR L Sbjct: 25 DNTLNAYRSDLEDLAAFLARAKQDFAHADTQVLRDYLADLDQRGFKSSSVARRLSSMRHL 84 Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS-----------QP 192 F++ + + +P + PKR + + D+ + E + Sbjct: 85 FRFLLNERKRTDDPAAILSGPKRGRALPKVLSIADVDRLLGKAREFADRDQPPLQKVRAM 144 Query: 193 RLA--FEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELP----------- 238 RL E L +GLR S+ + + + + K V L Sbjct: 145 RLWCLLEVLYATGLRVSELVALPLSAARRDARMIVVRGKGDKERLVPLNQSSRDAMAAYL 204 Query: 239 -------DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHG 288 + + P K F + + + F+ K A AG++ S H Sbjct: 205 AAAGTAKEEKGEKAKSEPASKWLFPSSGESGHLTRQHFARDLKELAVAAGISPRLISPHV 264 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 +R A+ GA + G + + YT + Sbjct: 265 LRHAFASHLLHNGADLRIVQTLLGHTDISTTQIYTHVVEER 305 >gi|212694197|ref|ZP_03302325.1| hypothetical protein BACDOR_03723 [Bacteroides dorei DSM 17855] gi|212663263|gb|EEB23837.1| hypothetical protein BACDOR_03723 [Bacteroides dorei DSM 17855] Length = 229 Score = 100 bits (248), Expect = 4e-19, Method: Composition-based stats. Identities = 41/226 (18%), Positives = 81/226 (35%), Gaps = 16/226 (7%) Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 ++ ++A LT ++ + A + N + R K + TKE++ Q Sbjct: 1 MHNGKRMMGTTANNNLTKLKCILAIAYEDGLLKENIAKKLVRAKAHGNKRQFLTKEELLQ 60 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL----QNNI-FSIKTQKTGTIITVE 236 + R A F +GLR SD R +++ I T+KT T + Sbjct: 61 LSQTPCKSDVLRRAGLFSCLTGLRLSDCIRLQWENIVKLADGGWGMDIITKKTSTAAILP 120 Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSA 294 + + ++L G F + + + +++ K +G+ K + H R A Sbjct: 121 ISEEALQL--CGERGTGQVF-----KNLTNSTVALYLKPWIKASGIEKHITFHCFRHTFA 173 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340 T+ G + + + + Y D ++ + RIS Sbjct: 174 TLQLAEGTDIYTVSKLLTHSNLATTQVYADVVDELKR--DAAERIS 217 >gi|16763023|ref|NP_458640.1| shufflon-specific DNA recombinase [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29144508|ref|NP_807850.1| shufflon-specific DNA recombinase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213161172|ref|ZP_03346882.1| shufflon-specific DNA recombinase [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213425488|ref|ZP_03358238.1| shufflon-specific DNA recombinase [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|8896036|gb|AAF81219.1|AF247502_14 Rci [Salmonella enterica subsp. enterica serovar Dublin] gi|6995991|gb|AAC38070.2| Rci [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|16505330|emb|CAD09330.1| shufflon-specific DNA recombinase [Salmonella enterica subsp. enterica serovar Typhi] gi|29140146|gb|AAO71710.1| shufflon-specific DNA recombinase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|32454468|gb|AAP83040.1| Rci site-specific recombinase [Salmonella enterica subsp. enterica serovar Paratyphi C] Length = 383 Score = 100 bits (248), Expect = 4e-19, Method: Composition-based stats. Identities = 42/279 (15%), Positives = 92/279 (32%), Gaps = 23/279 (8%) Query: 62 NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121 R K +L + +Y + + F + +ITT I S Sbjct: 3 RPQRIKKMSLSKALDKYYATVSVHKRGH--QQEFYRVRVIQRHPLAEKMMDEITTVDIAS 60 Query: 122 GVESRKHTPSSAIQF----------LTSMRVLFKWA-VRQEYVAINPCLSVERPKRKTEG 170 + R ++ L + L+ A V NP V +PK Sbjct: 61 YRDDRLSQVNTRTGRCISGNTVRLELALLSSLYNLASVEWGTCRTNPVEMVRKPKISGGR 120 Query: 171 IRPWTKEDMQQFKSFWSEGSQP-RLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQ 227 R T ++ ++ ++ E + F + + +R + +H+ + + Sbjct: 121 DRRLTSQEERRLSRYFQEQNPALHAIFHLAIETAMRQGEILSLRWEHIDLQHGVAHLPMT 180 Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSA 286 K G+ V L LL T ++ + +++ F ++ + + + Sbjct: 181 KNGSSRDVPLSRKARHLL-----QGMTVALSGNVFHYSSSGFKSAWRVALQRLNIVDLHF 235 Query: 287 HGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTK 324 H +R + + + G E+ A G ++++ + YT Sbjct: 236 HDLRHEAISRLFELGTLNVMEVAAISGHRSLNMLKRYTH 274 >gi|241206644|ref|YP_002977740.1| site-specific tyrosine recombinase XerC [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240860534|gb|ACS58201.1| integrase family protein [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 311 Score = 100 bits (248), Expect = 4e-19, Method: Composition-based stats. Identities = 52/276 (18%), Positives = 92/276 (33%), Gaps = 31/276 (11%) Query: 85 GSLAVNSRISFESYFDQIIRKS-GDF-------DYRKITTKHIRSGVESRKHTPSSAIQF 136 L+ ++ ++E Q + G D R++ + R+ + +R+ S A Sbjct: 27 RRLSEHTLDAYERDTRQFLTFLTGHLAGPVTLGDIRELRSADFRAFLAARRKQGSGARSL 86 Query: 137 ---LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK--------EDMQQFKSF 185 L +R L + ++ V +V PK+ +P + +D Q Sbjct: 87 GRNLAGLRSLLRHLEKKGLVNAAGAAAVRSPKQPKSLPKPLSDTQAITVVSDDAQLHDEP 146 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELP----DG 240 W ++ L GLR S++ LQ +++ T K V L D Sbjct: 147 W-IAARDAAVMTLLYGCGLRISEALDLTPADLQKGATTLRITGKGNKTRLVPLLSVIFDA 205 Query: 241 FMKLLAMTP---IGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSAT 295 K + P E F K+ A + + G+ + H +R AT Sbjct: 206 VEKYRTLCPYHLEAGEPLFRGARGGKLQAAIIQRTMQKMRSAFGLPETATPHALRHSFAT 265 Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 G + G ++ + YT G D RL Sbjct: 266 HLLAGGGDLRTIQELLGHASLSTTQVYT-GVDASRL 300 >gi|254475428|ref|ZP_05088814.1| tyrosine recombinase XerC [Ruegeria sp. R11] gi|214029671|gb|EEB70506.1| tyrosine recombinase XerC [Ruegeria sp. R11] Length = 305 Score = 100 bits (248), Expect = 4e-19, Method: Composition-based stats. Identities = 43/266 (16%), Positives = 84/266 (31%), Gaps = 27/266 (10%) Query: 85 GSLAVNSRISFESYF--------DQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI-- 134 A N+ ++ G +ITT +R+ + + + + A Sbjct: 22 RDAADNTLTAYRGDVVDFLAFMTQHFGSPQGLGALAEITTGDMRAWMAATRAGGTGARSL 81 Query: 135 -QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS------ 187 + L++++ + W ++ LS PK + + RP ++ + Sbjct: 82 ARKLSAVKSFYTWLAERQGFEATAVLSARSPKFQKKLPRPLAEDAAKAMIETVEYQSTSD 141 Query: 188 -EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL-- 244 ++ L GLR S++ T K G V + Sbjct: 142 WVAARDVAVVTVLYGCGLRISEALGLTGGDAPLPAVLRITGKGGKERIVPVLPAARAAVD 201 Query: 245 --LAMTPIGKET---FFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATIS 297 L + P +ET F +NA+ + G+ +A H +R AT Sbjct: 202 RYLDLCPHPQETNAPLFRGVRGGPLNASIIRKAMAQARAQLGLPATATPHALRHSFATHL 261 Query: 298 ADAGATAHELMATYGWKTVDQAETYT 323 +AG + G ++ + YT Sbjct: 262 LEAGGDLRAIQELLGHASLSTTQAYT 287 >gi|149922734|ref|ZP_01911160.1| Phage integrase [Plesiocystis pacifica SIR-1] gi|149816439|gb|EDM75939.1| Phage integrase [Plesiocystis pacifica SIR-1] Length = 374 Score = 100 bits (248), Expect = 4e-19, Method: Composition-based stats. Identities = 38/253 (15%), Positives = 78/253 (30%), Gaps = 19/253 (7%) Query: 88 AVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPSS--AIQFLTSMRVLF 144 + S E + I+ GD ++ + + T + T++ L Sbjct: 94 KPSHTESIERHLRIHILPAFGDKRLDELEQEDLERFKAKLGETRKNKTINNIQTTLSTLL 153 Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSG- 203 K AV + + P ++R + + + + ++ + F ++ + +L G Sbjct: 154 KAAVAWKVIEEVPVE-IKRLRVVRKKMDFFDFDEFAWLREFAAKAPSDGIDLAIVLLGGD 212 Query: 204 --LRCSDSCRAGVQHLQNNI-----------FSIKTQKTGTIITVELPDGFMKLLAMTPI 250 LR + L I T K I + + K L P Sbjct: 213 AGLRAGEIRGLHWDSLDFQRNRLTVERAEWHGHITTPKHDKIRVLPMTQRLNKALRQLPR 272 Query: 251 GKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMA 309 + + + A + +AG+ +K H +R + A G A + Sbjct: 273 ECKLVLPQPSGEPLTAGLLDKRLRRVEKRAGLRDKGPHTLRHTFCSHLAMRGIPARVIQQ 332 Query: 310 TYGWKTVDQAETY 322 G ++ E Y Sbjct: 333 LAGHSSLVTTERY 345 >gi|88607829|ref|YP_504822.1| tyrosine recombinase XerC [Anaplasma phagocytophilum HZ] gi|88598892|gb|ABD44362.1| tyrosine recombinase XerC [Anaplasma phagocytophilum HZ] Length = 319 Score = 100 bits (248), Expect = 5e-19, Method: Composition-based stats. Identities = 30/205 (14%), Positives = 67/205 (32%), Gaps = 16/205 (7%) Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF--KSFWSEGSQP 192 + ++++R F++ R + + + P + + K + + ++ + Sbjct: 92 RAISAIRNFFRYLQRNHGIKNDVVFHIVNPIVRKGLPKVLEKSHVLKMVSENIHWTSRRD 151 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT---- 248 L GLR S++ L+ + + K + + KLL Sbjct: 152 AAIVALLYGCGLRISEAVGLRFGDLEADAVRV-LGKGKKERIIPILPWVQKLLDGYVESC 210 Query: 249 -------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISAD 299 F+ + ++ T F+ +A G+ +S H +R AT Sbjct: 211 PFHGTGCGNKASYVFLGVRGKVLDRTYFAHRMQALRRNMGLPESTTPHALRHSFATHLFL 270 Query: 300 AGATAHELMATYGWKTVDQAETYTK 324 GA + G + + + YT Sbjct: 271 EGADIRVIQELLGHENLSTTQIYTH 295 >gi|326799802|ref|YP_004317621.1| Tyrosine recombinase xerC [Sphingobacterium sp. 21] gi|326550566|gb|ADZ78951.1| Tyrosine recombinase xerC [Sphingobacterium sp. 21] Length = 293 Score = 100 bits (248), Expect = 5e-19, Method: Composition-based stats. Identities = 40/282 (14%), Positives = 91/282 (32%), Gaps = 25/282 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFD-----QIIRKSGDFDYRKITTKHIRSGVESRK 127 + + + + ++ ++E + + + ++ S + Sbjct: 2 YVERFMSFLRFEKHYSEHTLKAYEKDVRSYLQFWVAEQISFEEVGHKQLRYYLSILMDSG 61 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 SS + L+S+R +K+ R+ NP L V+ K+ + ++ + Q Sbjct: 62 LEASSINRILSSLRTYYKFLQRESLYGANPTLLVKALKKPKKLPVVIQEDKLNQLLDHDH 121 Query: 188 ------EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDG 240 EG + RL E L +G+R ++ + + + +I+ K V + Sbjct: 122 IFQDNFEGQRDRLIIELLFGTGMRLTELIQLQEKDIDYYNQTIRILGKRNKERIVPMLPH 181 Query: 241 FMKLLAM---------TPIGKETFFINNDKQKMNATQFSIWFKAKA--TKAGVNKSAHGV 289 L+ T + ++ + KS H + Sbjct: 182 LKLLIEQYLKLKKIENLDNNSLTLVVTIKGKQAYPKLIYQVVIRYLSLITSQQKKSPHVL 241 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIR 330 R AT + GA + + G + + YT +R++ Sbjct: 242 RHSFATALLNKGADLNAIKELLGHANLVATQVYTHNSVERLK 283 >gi|322384983|ref|ZP_08058635.1| phage integrase-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321150178|gb|EFX43689.1| phage integrase-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 404 Score = 100 bits (248), Expect = 5e-19, Method: Composition-based stats. Identities = 57/340 (16%), Positives = 115/340 (33%), Gaps = 41/340 (12%) Query: 23 YYFR-----KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT--TLKWLI 75 +Y+R G+R + F + + E +N +PT T+ + Sbjct: 50 WYYRYDITDPKTGKRKQKEVGG---FRTKEEAQEAAVRIQSELLNGTYVEPTKLTVGEFL 106 Query: 76 SEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKH--TPSS 132 ++ ++ +A N+ ++ + I G +T H++ S + Sbjct: 107 LDFVENTLKYEVAPNTYEQRMTFVKNHIQPNIGSLRLTDLTPNHVQKFYNSLREHYGAGY 166 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK--RKTEGIRPWTKEDMQQFKSFWSEGS 190 + F AV+ ++ NP V++P RK ++ WT ED ++F + +G Sbjct: 167 VQNIGNLLSKAFTQAVKWNMISRNPIPLVKKPSLSRKNTKMKTWTVEDQRKFLDYAKDGP 226 Query: 191 QPR-LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-----------------GTI 232 + + F L SG+R + + + ++T I Sbjct: 227 KLYYVIFLLALTSGMRKGELLGLIWDDVDTKKGIVSIKRTIVYAQRKLYLKDMPKTESAI 286 Query: 233 ITVELPDG----FMKLLAMTPIGKETFFINNDKQK--MNATQFSIWFKAKATKAGVNK-S 285 T++LP+ + P + + K K + AGV + + Sbjct: 287 RTIQLPEPTIKVMKQWKLECPANELNLLFPSPKTKGILYPNSLDKQLAKTIKGAGVPEIT 346 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324 HG+R AT + + G T+ +TY+ Sbjct: 347 MHGLRHTFATTLLGSNVNPKIVQEMLGHATIKTTMDTYSH 386 >gi|300855279|ref|YP_003780263.1| putative site-specific recombinase [Clostridium ljungdahlii DSM 13528] gi|300435394|gb|ADK15161.1| predicted site-specific recombinase [Clostridium ljungdahlii DSM 13528] Length = 328 Score = 100 bits (248), Expect = 5e-19, Method: Composition-based stats. Identities = 48/299 (16%), Positives = 99/299 (33%), Gaps = 43/299 (14%) Query: 85 GSLAVNSRISFESYFDQIIR-------------KSGDFDYRKITTKHIRSGVES------ 125 + N++ ++ R + + D I T IR S Sbjct: 28 RGKSKNTQDGYQVDLTMFFRFLKIYRGIVKENYEFENIDISDINTDFIRKITLSDLYAFI 87 Query: 126 ------RKHTPSSAIQFLTSMRVLFKWA-VRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 R + + + + ++ FK+ + + + NP L +E PK + ++ Sbjct: 88 SFAENYRNNGNYARARKVACLKSFFKYLFSKAKLIDTNPALELESPKIDKRNPIYLSLKE 147 Query: 179 MQQFKSFWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236 + + + R F L G+R S+ C + ++ + ++ K T+ Sbjct: 148 SKILLNSIDGKFKERDYCIITFFLNCGMRLSELCSINISKIKEDTLTV-VGKGNKERTIY 206 Query: 237 LPDGFMKLL----------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--- 283 L + L K+ F++ + ++N + K AG++ Sbjct: 207 LNRACLTALNNYLEIRNKDYDKIKDKDALFLSKNHTRINKRSVEMMLKKYLKNAGLDSNK 266 Query: 284 KSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341 + H +R +AT+ G L G + V + YT D NS +S+ Sbjct: 267 YTPHKLRHTAATLMYKYGNVDIRSLQKILGHENVSTTQIYTHVDDEQLREAVNSNPLSN 325 >gi|213649960|ref|ZP_03380013.1| shufflon-specific DNA recombinase [Salmonella enterica subsp. enterica serovar Typhi str. J185] Length = 382 Score = 100 bits (248), Expect = 5e-19, Method: Composition-based stats. Identities = 42/279 (15%), Positives = 92/279 (32%), Gaps = 23/279 (8%) Query: 62 NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121 R K +L + +Y + + F + +ITT I S Sbjct: 3 RPQRIKKMSLSKALDKYYATVSVHKRGH--QQEFYRVRVIQRHPLAEKMMDEITTVDIAS 60 Query: 122 GVESRKHTPSSAIQF----------LTSMRVLFKWA-VRQEYVAINPCLSVERPKRKTEG 170 + R ++ L + L+ A V NP V +PK Sbjct: 61 YRDDRLSQVNTRTGRCISGNTVRLELALLSSLYNLASVEWGTCRTNPVEMVRKPKISGGR 120 Query: 171 IRPWTKEDMQQFKSFWSEGSQP-RLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQ 227 R T ++ ++ ++ E + F + + +R + +H+ + + Sbjct: 121 DRRLTSQEERRLSRYFQEQNPALHAIFHLAIETAMRQGEILSLRWEHIDLQHGVAHLPMT 180 Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSA 286 K G+ V L LL T ++ + +++ F ++ + + + Sbjct: 181 KNGSSRDVPLSRKARHLL-----QGMTVALSGNVFHYSSSGFKSAWRVALQRLNIVDLHF 235 Query: 287 HGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTK 324 H +R + + + G E+ A G ++++ + YT Sbjct: 236 HDLRHEAISRLFELGTLNVMEVAAISGHRSLNMLKRYTH 274 >gi|86283512|gb|ABC92575.1| tyrosine site-specific integrase/recombinase protein [Rhizobium etli CFN 42] Length = 383 Score = 100 bits (248), Expect = 5e-19, Method: Composition-based stats. Identities = 48/274 (17%), Positives = 83/274 (30%), Gaps = 34/274 (12%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTK-----HIRSGVESRKHTPSSAIQFLTS 139 A N+ S+E D + R + + + PSS + L + Sbjct: 86 RGAAANTLQSYERDLDDVRSFLNGRSIRLTEAASADLAAYLASLARQGFKPSSQARRLAA 145 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-------SEGSQP 192 MR +K+ + +P ++ PK+ + E++ + S + G Sbjct: 146 MRQFYKFLYAEGLRTDDPTGVLDAPKKGRPLPKTMGVEEVGRLLSQAQTEADDPAPGQLQ 205 Query: 193 R----LAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLLA- 246 R E L +G+R S+ + L F + K V L + L Sbjct: 206 RRRMLALLELLYATGMRVSELVSLPARVLDQEGRFLMIRGKGNKERLVPLSHSAIAALKS 265 Query: 247 ------------MTPIGKETFFINNDKQKM-NATQFSIWFKAKATKAGVN---KSAHGVR 290 P F K+ F+ K A +AG+ S H +R Sbjct: 266 YGRLLAADAAAAKEPQESPWLFPAASKEGYLPRQVFARDLKNLAIRAGLTPSLISPHVMR 325 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK 324 A+ GA + G + + YT Sbjct: 326 HAFASHLLANGADLRVVQELLGHSDISTTQIYTH 359 >gi|160893903|ref|ZP_02074682.1| hypothetical protein CLOL250_01458 [Clostridium sp. L2-50] gi|156864281|gb|EDO57712.1| hypothetical protein CLOL250_01458 [Clostridium sp. L2-50] Length = 379 Score = 100 bits (248), Expect = 5e-19, Method: Composition-based stats. Identities = 42/287 (14%), Positives = 86/287 (29%), Gaps = 44/287 (15%) Query: 74 LISEYRKSAHWGSLA-----VNSRISF-ESYFDQIIRKSGDFDYRKITTKHIRSGVESRK 127 L+ + + W L N+ ++ E Y I + ++ H + Sbjct: 67 LVDAWFEY--WIDLKKKTVRPNTVRNYSERYERNIKNVIENKLLTEVKPIHCQKIFSDMA 124 Query: 128 HTPSSAIQFLTSMRVLFK---WAVRQEYVAINPCLS-VER-PKRKTEGIRPWTKEDMQQF 182 + L+ +A E + NPC V+ + ++ T +D ++F Sbjct: 125 DEGYKTTTIYQTRIALYNMLEFAKENEVIITNPCKKSVKSDIGKPSDKKEALTIDDQRRF 184 Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL---------------QNNIFSIKTQ 227 + S + F L +GLR + + + + + + Sbjct: 185 LAAAKGQSYEY-QYRFALQTGLRTGELVGLKWEDINFERKTLTIERSMEFRYKVGEWRVG 243 Query: 228 KTGTI---ITVELPDGFMKLLAMTPIG-----------KETFFINNDKQKMNATQFSIWF 273 + T+ L D + +L +T F+ Q + + + Sbjct: 244 PPKSKSGYRTIPLTDEAICILKAQKEKNRKIKVIDKEWADTVFLCRKGQPVKNSTYDTAL 303 Query: 274 KAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319 KAG+ + S H +R AT + G L G + Sbjct: 304 FKICDKAGIKRFSMHVLRHTFATRCIEGGMMPKTLQKILGHSNIGIT 350 >gi|84683725|ref|ZP_01011628.1| site-specific recombinase, phage integrase family protein [Maritimibacter alkaliphilus HTCC2654] gi|84668468|gb|EAQ14935.1| site-specific recombinase, phage integrase family protein [Rhodobacterales bacterium HTCC2654] Length = 392 Score = 100 bits (248), Expect = 5e-19, Method: Composition-based stats. Identities = 55/327 (16%), Positives = 111/327 (33%), Gaps = 32/327 (9%) Query: 12 TKERTRHGKIIYYFRKGHGRRIRLP-YPHES-TFIPAYMSALTGSTPKR-----EYINSP 64 + T K+ Y + +G R R+ P+ + A A+ + + P Sbjct: 39 VRVSTTGAKVFYTLVRPNGSRRRIKIGPYPVVSLADARRRAMEIARDVELGEFEKTPEVP 98 Query: 65 RKKPTTLKWLISEYRKSAHWGSL--AVNSRISFESYFDQIIRKSG---DFDYRKITTKHI 119 TL +I + L N++ + + ++ K D +I + + Sbjct: 99 EASADTLGEMI------PKFIELHAKPNTKDWKRT--ESVLHKFDGLKDRPIDQIRRQDV 150 Query: 120 RSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177 ++ TP+ A + L++++ L W V + + +P + P R+ + R + Sbjct: 151 SKVLDGIIANGTPTRANRALSAIKKLMNWCVMRGDIETSPVALLRPPTREVQRDRVLSDA 210 Query: 178 DMQQFKSFWSEGSQPRLAFE-FLLYSGLRCSDSCRAGVQHLQNNIFSI----KTQKTGTI 232 +++ P F LL SG R S+ L + K + Sbjct: 211 EIRAIWQHSDAEDYPFGPFLKLLLISGQRRSEVAGMRWSELNLDEGIWELPANRVKNARL 270 Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA----HG 288 V LP + +L ++ F+ + + F K + A + H Sbjct: 271 HIVPLPVQAVDILRGLHRFLDSDFVFTTTGRSAISGFG-RLKERVDTALPEGTPDWRFHD 329 Query: 289 VRKFSATISADAGATAHELMATYGWKT 315 R+ ++T A G H + A K+ Sbjct: 330 FRRTASTGMAKLGVMPHVIDAVTNHKS 356 >gi|242240462|ref|YP_002988643.1| integrase family protein [Dickeya dadantii Ech703] gi|242132519|gb|ACS86821.1| integrase family protein [Dickeya dadantii Ech703] Length = 374 Score = 100 bits (248), Expect = 5e-19, Method: Composition-based stats. Identities = 40/242 (16%), Positives = 89/242 (36%), Gaps = 18/242 (7%) Query: 95 FESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQF---LTSMRVLFKWA-VRQ 150 ++ + + D + + S +R P SA L + L+ A V Sbjct: 40 RSRLANRNMDEISSIDIAEYRDTRL-SEFNARTQKPISANTVRLELALLSALYNLAKVEW 98 Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA-FEFLLYSGLRCSDS 209 +INP ++ +P + R T + ++ ++ + + LA F L +G+R + Sbjct: 99 GTCSINPVENIRKPTVSSGRTRRLTTHEERRLTRYFKDKNPELLAIFHIALETGMRQGEI 158 Query: 210 CRAGVQ--HLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT---PIGKETFFINNDKQKM 264 + L+ + + K GT V L ++L+ P + + + Sbjct: 159 LSLRWEYTDLRLGVAHLPLTKNGTSRDVPLSSKARQILSGLGERPHHENGYIFS-----Y 213 Query: 265 NATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETY 322 ++ F ++ + + H +R + + + G E+ A G K+++ + Y Sbjct: 214 TSSGFKSAWRVALKALAIDDLHFHDLRHEAISRFFELGTLNVMEVAAISGHKSMNMLKRY 273 Query: 323 TK 324 T Sbjct: 274 TH 275 >gi|284031468|ref|YP_003381399.1| integrase family protein [Kribbella flavida DSM 17836] gi|283810761|gb|ADB32600.1| integrase family protein [Kribbella flavida DSM 17836] Length = 318 Score = 100 bits (248), Expect = 5e-19, Method: Composition-based stats. Identities = 48/294 (16%), Positives = 100/294 (34%), Gaps = 37/294 (12%) Query: 88 AVNSRISFESYFDQIIRKSGDFD----YRKITTKHIRSGVESRKHT--PSSAIQFLTSMR 141 + ++ ++ I D +T +R+ + SS ++ ++ Sbjct: 20 SPHTTAAYRRDLAGITALLTDDPDSLQVEDLTAPALRAAFGAFADGHAKSSVLRAWSTWN 79 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM-QQFKSFWSEG---------SQ 191 + V +A NP +V RPK +P ED ++ ++G + Sbjct: 80 QFLTFCVSDGLLAGNPMGAVARPKTPPLSPKPLRGEDTPERLLQAAADGVRRGRDPWPER 139 Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQKTGTI-ITVELPDGFMKLLAM- 247 L L +GLR ++ L + G+ ++ + +++A Sbjct: 140 DVLVIALGLVAGLRSAEMRMLTADSLAGRPGEMRLHVHGKGSRDRSIPVEPIMERIIAAY 199 Query: 248 -------TPIGKET----FFINNDKQKMNATQFSIWFKAKATKAGVN------KSAHGVR 290 P + ++ + + K+ AG++ + H +R Sbjct: 200 LDSCARRFPRKRFGRSAKLLLDREGSPIGRGGLEYLVKSCYRWAGLHDRVPVGANLHALR 259 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344 AT A+ GATA E+MA G ++ ++ Y + R + S R +D Sbjct: 260 HTFATRLAEDGATASEIMALLGHASLATSQNYIEATGREQRAATASNRTYRTLD 313 >gi|182413068|ref|YP_001818134.1| integrase family protein [Opitutus terrae PB90-1] gi|177840282|gb|ACB74534.1| integrase family protein [Opitutus terrae PB90-1] Length = 388 Score = 100 bits (248), Expect = 5e-19, Method: Composition-based stats. Identities = 47/301 (15%), Positives = 85/301 (28%), Gaps = 48/301 (15%) Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD------YRKITTKHI 119 + K + K ++ + + + + G I + Sbjct: 73 AADVSFKTYTDIWLKRKATEEVSPGTLTRYRQIAEAMGEFLGPRIERNLVFLSAIEVQTF 132 Query: 120 RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE--GIRPWTKE 177 R + +R + SA +L ++R+L A R +V N V+ K + RP+T Sbjct: 133 RDLIGAR-LSAKSANIYLKTLRILLGEAWRDGHVIENVANKVKTLKVRENQTARRPFTTT 191 Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN--IFSIKTQKTGTIITV 235 ++ S + F Y+ R D + + KT KT + V Sbjct: 192 QIEILLSHAPGEWKG--IILFGFYTAQRLGDIASLSWSQVDLEKAVVHFKTAKTHRTVEV 249 Query: 236 ELPDGFMKLLAMTPIG---------KETFFINNDKQKMNATQFSIWFKAKATKAGVN--- 283 L D + L P K + + + S F T A + Sbjct: 250 PLADPLLAFLKRLPAPERATAPVFPKAHAIVTKEGR---TGSLSNQFHEILTAAKLAEKR 306 Query: 284 --------------------KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 S H +R + + G G ++ +E YT Sbjct: 307 THHADAKAPTGRSGKRQTSALSFHSLRHSATSALKREGVNDATARDIVGHESRAISEHYT 366 Query: 324 K 324 Sbjct: 367 H 367 >gi|126178708|ref|YP_001046673.1| phage integrase family protein [Methanoculleus marisnigri JR1] gi|125861502|gb|ABN56691.1| tyrosine recombinase XerC subunit [Methanoculleus marisnigri JR1] Length = 304 Score = 100 bits (248), Expect = 5e-19, Method: Composition-based stats. Identities = 39/289 (13%), Positives = 94/289 (32%), Gaps = 32/289 (11%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS----------------------GD 108 + + + + + + + R + D Sbjct: 6 FSEWLDRFSSYLRMRNYSPRTIEKYLQTIRRFARYAWLRQNSDGVSFDGAAFENAPLDAD 65 Query: 109 FDYRKITTKHIRSGVESRKH-TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167 + S + ++ P + + ++++ +K+ Q V +P L VERP+ K Sbjct: 66 VNVSSALVTDFFSYLSEQQDYKPKTLHRMISTLSSFYKYLYVQGAVVADPMLGVERPRIK 125 Query: 168 TEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ 227 + ++ + + + + RL + +G+R S+ C V+ + +I+ + Sbjct: 126 NQELKYLKHSQVLRLINTIES-ERDRLIVRLIYATGVRVSELCAICVEDIDFEEQTIRVK 184 Query: 228 KTGTII-TVELPDGFMKLLAMTP--IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284 G I TV + + ++ + + F ++ FK A G+ Sbjct: 185 GKGDKIRTVFIDEETLEEINRFIGNTIEGPLFSGQQGNHLSPRTVQHLFKQYAPS-GI-- 241 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG--ADRIRL 331 + H +R A+ + G ++ E Y +R R+ Sbjct: 242 TPHKIRHSYASELYRRSKNLRVVQENLGHSSIKTTEIYLHTDIDERKRV 290 >gi|93005052|ref|YP_579489.1| phage integrase [Psychrobacter cryohalolentis K5] gi|92392730|gb|ABE74005.1| tyrosine recombinase XerC subunit [Psychrobacter cryohalolentis K5] Length = 349 Score = 100 bits (248), Expect = 5e-19, Method: Composition-based stats. Identities = 43/313 (13%), Positives = 101/313 (32%), Gaps = 33/313 (10%) Query: 45 PAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR 104 P+++SA T + + S P + + + + ++ ++ + +Q+ Sbjct: 22 PSWLSAELAITIEADAALSELLAP------VHRWLNVLSVRNHSPHTLTAYFAGLNQLAL 75 Query: 105 KSGDFDY------RKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPC 158 ++ +HI ++ K + +S Q L+++R + W + ++ INP Sbjct: 76 FLRGKRLTWTRCDKRQLAQHISQRLDEDKLSLASVQQELSAIRHFYGWLIEEDLARINPT 135 Query: 159 LSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS--------QPRLAFEFLLYSGLRCSDSC 210 + + + + Q + + + FE L SGLR + Sbjct: 136 TGYQLKRSPRPLPSIADVDLLTQLLDQEIPDTPEQARLWLRDKAMFELLYSSGLRVGELV 195 Query: 211 RAGVQHLQNNIFSIKTQKTGTIIT-VELPDGFMKLLAM---------TPIGKETFFINND 260 + + ++ G V L + + + F Sbjct: 196 ALDIVDVDLADLRVRVTGKGNKTRLVPLGIKAADAIRRYLPHRNLWVEQMDQALFISEKL 255 Query: 261 KQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQ 318 +++ K AT+AG+ ++ H +R A+ + G + Sbjct: 256 GTRLSTRAVQQRLKVAATRAGIAQNMYPHLLRHCFASHMLSGSGDLRAVQEMLGHSDIST 315 Query: 319 AETYTKGADRIRL 331 + YT D +L Sbjct: 316 TQIYTH-VDFAKL 327 >gi|296110926|ref|YP_003621307.1| integrase [Leuconostoc kimchii IMSNU 11154] gi|295832457|gb|ADG40338.1| integrase [Leuconostoc kimchii IMSNU 11154] Length = 375 Score = 100 bits (248), Expect = 5e-19, Method: Composition-based stats. Identities = 55/347 (15%), Positives = 112/347 (32%), Gaps = 46/347 (13%) Query: 16 TRHGKII----YYFRKGHGRRIRLPYPH------ESTFIPAYMSALTGSTPKREYINSPR 65 ++HGK+ Y R G + R + ++ + K +P Sbjct: 8 SKHGKVYEVVGYIGRHQDGTQARAKKRGFDSKRSAQQWFNNEVALFSNGQSKYNKKTTPN 67 Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVE 124 T+K L + ++ ++ ++ + F+ II GD I ++ + Sbjct: 68 V--MTVKELYDMWLETYQ-HTVEESTLNKTMNVFNVHIIPAWGDTRVTDIRPLDLQRYIN 124 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 + + + +R L AVR + + ++P +E PK + + + D+ +FK+ Sbjct: 125 TMQGKILHYRKITGYLRRLLNIAVRMDMIPVDPFTKIEMPKERRQVNKRKQFMDVDEFKA 184 Query: 185 FWS--------EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKT-------- 226 F Q +G+R + + + SI Sbjct: 185 FVEVLDSQYKYINQQAYTLLRLGAMTGMRTEELLALQWEQVDFNGGYISIVQALGRGFNG 244 Query: 227 -----------QKTGTIITVELPDGFMKLLAMTP-IGKETFFINNDKQKMNATQFSIWFK 274 K I ++ ++ F NN + + + + W Sbjct: 245 GTYIKAPKSQTSKRTLKIDNKMLAVLSDWYEVSHYNSNNDFVFNNQGKTLQVMRPNKWLH 304 Query: 275 AKATKAG--VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319 + K G V S H +R AT++ D GA+ ++ G V Sbjct: 305 DVSNKYGVAVGLSMHKLRHTWATLALDQGASVKQVQTYLGHADVSMT 351 >gi|312109424|ref|YP_003987740.1| integrase [Geobacillus sp. Y4.1MC1] gi|311214525|gb|ADP73129.1| integrase family protein [Geobacillus sp. Y4.1MC1] Length = 301 Score = 100 bits (248), Expect = 5e-19, Method: Composition-based stats. Identities = 40/286 (13%), Positives = 92/286 (32%), Gaps = 36/286 (12%) Query: 88 AVNSRISFE----SYFDQIIRKSGDFDYRKITTKHIRSGVESRKH----TPSSAIQFLTS 139 + S+ + ++ G++ + I+ + KH P++ +++ + Sbjct: 18 DEKTIASYRTTVVHFLTWKEQRDGEYIIEETRPIDIKEYISYLKHQCKRKPATINKYIAA 77 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKR---KTEGIRPW-TKEDMQQFKSFWSE------G 189 ++V F + + + NP ++ K W TKE+ +F S+ Sbjct: 78 LKVFFAFLLSSGIIKDNPMTRIKVEKLDYANGANQTKWLTKEEQDRFISYVQLEPNEFKR 137 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVEL-------- 237 + + +LYSGLR ++ + + ++ I+ K TV L Sbjct: 138 LRNLAIIDLMLYSGLRVNEVSSLEINDIITKDKDVQVIIREGKGNKFATVILVQKHAKNL 197 Query: 238 ---PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFS 293 L F++ A A ++ + H R Sbjct: 198 RKWLKYRKGLDKDIHKSSPRLFVSERSPFFTERGIQKMLNKYAELANMDHITPHRFRHSF 257 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339 A+AG + +++ Y + + + I+ R++ Sbjct: 258 CKNLANAGTPIELIRRLARHESIQTTAIYLESSQEEQ--IETLRKV 301 >gi|78187478|ref|YP_375521.1| phage/XerD family site-specific recombinase [Chlorobium luteolum DSM 273] gi|78167380|gb|ABB24478.1| site-specific recombinase, phage/XerD family [Chlorobium luteolum DSM 273] Length = 341 Score = 100 bits (248), Expect = 5e-19, Method: Composition-based stats. Identities = 54/309 (17%), Positives = 92/309 (29%), Gaps = 50/309 (16%) Query: 65 RKKPTTLK-WLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKS------GDFDYRKITT 116 + P TL LI E+ S +L+ + +++ + Q G+FD +T Sbjct: 17 KDNPATLSERLIEEFLLSGRGQKNLSGTTIVAYRTDLRQFFGFLARHSGSGEFDLSLVTP 76 Query: 117 KHIR---SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173 +R + R S + L S++ F++ ++ + +V P+ Sbjct: 77 SLVRMFMGDLLRRGLQQRSIARKLASLKSFFRFLHESRHLTESALSAVSMPRYSRPIPSF 136 Query: 174 WTKEDMQQFK------SFWSEG-------------SQPRLAFEFLLYSGLRCSDSCRAGV 214 T+ + + EG + E L GLR S+ Sbjct: 137 LTEPEASMLFEDVVPMAPHREGFAHGRELQRNFTLLRDAAILEMLYGCGLRISELTGLRQ 196 Query: 215 QHLQN-NIFSIKTQKTGTIITVELPDGFMKLLA----------------MTPIGKETFFI 257 L+ F T K V L + L F Sbjct: 197 SDLEMVGGFVKLTGKGRKQRIVPLGAPAVSALKKYFEVRLNFFRISVDGALGESDFVFLT 256 Query: 258 NNDKQ--KMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKT 315 N KQ M + + + A K+ H +R AT + GA + G Sbjct: 257 NKGKQIYPMLVQRMTRRY-LAAVTEQKKKNPHTLRHTFATHLLNGGADLQSVSEMLGHSN 315 Query: 316 VDQAETYTK 324 + E YT Sbjct: 316 LSTTEIYTH 324 >gi|49474762|ref|YP_032804.1| site-specific tyrosine recombinase XerC [Bartonella quintana str. Toulouse] gi|49240266|emb|CAF26736.1| Integrase /recombinase xerC [Bartonella quintana str. Toulouse] Length = 322 Score = 100 bits (248), Expect = 5e-19, Method: Composition-based stats. Identities = 41/270 (15%), Positives = 78/270 (28%), Gaps = 28/270 (10%) Query: 88 AVNSRISFESYFDQIIRKSGDFD-------YRKITTKHIRSGVESRKHTPSSAIQFLTSM 140 A + + + G R + + + + S + + + Sbjct: 44 AQAYERDTRQFLSFLCQHLGHKPTFHDLANLRVTDLRAYLAYRRTLNISARSLSRGMAGL 103 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT--------KEDMQQFKSFWSEGSQP 192 R F + R+ V+I V PK +P K++ QQ W ++ Sbjct: 104 RSFFNYLSREGIVSIPASKLVRTPKYSKSLPKPLAIKSALHVVKQENQQENESWII-ARN 162 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQKTGTIITVELP----DGFMKLLA 246 L G+R S++ + + T K G V L + L Sbjct: 163 AAVLILLYGCGMRISEALALTPEQFSDPEKTSLFVTGKGGKTRLVPLIKVVYETIQNYLK 222 Query: 247 MTP---IGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAG 301 P + + F ++ + + G+ + H +R AT G Sbjct: 223 CCPYPLVENQPMFRGARGGPLHPAIIQRTVRNLRSSLGLPETATPHSLRHSFATHLLSRG 282 Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRL 331 + G ++ + YT D RL Sbjct: 283 GDLRTIQELLGHASLSTTQIYTH-VDTDRL 311 >gi|67920907|ref|ZP_00514426.1| Phage integrase:Phage integrase, N-terminal SAM-like [Crocosphaera watsonii WH 8501] gi|67857024|gb|EAM52264.1| Phage integrase:Phage integrase, N-terminal SAM-like [Crocosphaera watsonii WH 8501] Length = 279 Score = 100 bits (248), Expect = 5e-19, Method: Composition-based stats. Identities = 48/242 (19%), Positives = 94/242 (38%), Gaps = 8/242 (3%) Query: 88 AVNSRISFESYFDQIIRKSG-DFDYRKITTKH-IRSGVESRKHTPSSAIQFLTSMRVLFK 145 + +R ++S Q IR G + KI H +E + + PS+ L++++ LF Sbjct: 23 SKLTRQHYQSNIKQFIRFIGLSLEEVKIEDIHGFVRMLELKGNKPSTIKGKLSTVKSLFS 82 Query: 146 WAVRQEYVAINPCLSVERPKRKTE-GIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGL 204 +A + Y+ N + V+ PK ED+++ + + RL + + + GL Sbjct: 83 FAYKVGYLTSNVAVLVKSPKVNKRIASMRIENEDIRKMVDGTNS-KRDRLIIKMMYFLGL 141 Query: 205 RCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ-- 262 R S+ R + N I + + F++L + TF ++ Sbjct: 142 RVSEVLRLKWSYFYQNKVFISGKGNKERSLNLPEELFLELSELKSEFNPTFVFTAYQRDE 201 Query: 263 KMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320 ++ +I + G++ H + + S D G H L + G +V E Sbjct: 202 QLKRQAVNIMLNRLKKRLGIDANIHPHKFKHEHSMTSLDNGCDIHLLSRSLGHSSVSITE 261 Query: 321 TY 322 +Y Sbjct: 262 SY 263 >gi|258405086|ref|YP_003197828.1| integrase family protein [Desulfohalobium retbaense DSM 5692] gi|257797313|gb|ACV68250.1| integrase family protein [Desulfohalobium retbaense DSM 5692] Length = 371 Score = 100 bits (248), Expect = 5e-19, Method: Composition-based stats. Identities = 54/332 (16%), Positives = 102/332 (30%), Gaps = 31/332 (9%) Query: 13 KERTRHGKIIYY---FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69 ++ R+GK++ + R+ + R+ E AL I R PT Sbjct: 3 SKKKRNGKMVGWLAQVRRQGVNKSRVCATREEA------LALEAQWKAEIKIEEERTTPT 56 Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG-DFDYRKITTKHIRSGVESRKH 128 L+W ++Y + + + D ++R G + + R IT + + ++ Sbjct: 57 VLEW-GNDYLDFSK-KRHSERTYEEKRYALDLLVRAVGGETEVRHITVGNALAILDDVAE 114 Query: 129 TPSS--AIQFLTSMRVLFKWAVR--QEYVA-INPCLSVERPKRKTEGIRPWTKEDMQQFK 183 S A Q ++ + W R ++ +P VER + ED+Q Sbjct: 115 RRSGYVANQVRKNLLAAWNWGNRYLDKWPDMASPFGKVERYSYQKRPRVVPPMEDVQAVL 174 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ------NNIFSIKTQKTGTIITVEL 237 E R L++ R + R + + + + + Sbjct: 175 EIMDE--TDRAMLLAYLHTAARRDEIFRLQWEDIDFANSKIALWTRKRQGGAWEADRIPM 232 Query: 238 PDGFMKLL---AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFS 293 + L G F +K W +AGV S HG+R + Sbjct: 233 TRDLREALLKERGKGNGHGLVFCREGGRKY--QYRRHWIPYWCDRAGVPLFSFHGIRHLA 290 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKG 325 A+ + A K+ + Y Sbjct: 291 ASWLDAHNVPLTTIQAVLRHKSANTTAKYLHE 322 >gi|326201175|ref|ZP_08191047.1| integrase family protein [Clostridium papyrosolvens DSM 2782] gi|325988743|gb|EGD49567.1| integrase family protein [Clostridium papyrosolvens DSM 2782] Length = 291 Score = 100 bits (248), Expect = 5e-19, Method: Composition-based stats. Identities = 39/284 (13%), Positives = 93/284 (32%), Gaps = 28/284 (9%) Query: 73 WLISEYRKSAHWGSLAVNSRISF----ESYFDQIIRKSGDFDYRKITTKHIRSGV----E 124 I+EY + N+ SF + + G ++ + R Sbjct: 2 NWITEYENHLKTAQKSPNTISSFVSDVHEFVEWFAITYGKKFDCQVLEQDAREFRGFLLN 61 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF-K 183 + P++ + + +++ ++ V + P + I+ + + + + Sbjct: 62 ILRRKPATINRKMAALKSFNQFLVEKGLSKDIPIAGLLLADPSDREIKTLERTEQNKLKR 121 Query: 184 SFWSEGS-QPRLAFEFLLYSGLRCSDSCRAGVQHL----QNNIFS-----IKTQKTGTII 233 + +++G+ + +E L G+R S+ ++ + +N + I+ K Sbjct: 122 AIYAKGNKRDIAIYELLYNIGVRVSELVSLSLEDVHLTERNGNINYSYVIIRQGKGSKYR 181 Query: 234 TVELP----DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHG 288 L + L + + FI + K AG+++ S+H Sbjct: 182 ECPLNAQARSALDEYLKIRVSSSDNIFIGQRG-PLGREAVDKILKKYCADAGIDRISSHV 240 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETY---TKGADRI 329 +R T G + G +V+ + T AD+I Sbjct: 241 IRHTFCTRLIQEGVPLPTVSRLAGHSSVETTTRFYVHTPRADKI 284 >gi|295399108|ref|ZP_06809090.1| integrase family protein [Geobacillus thermoglucosidasius C56-YS93] gi|294978574|gb|EFG54170.1| integrase family protein [Geobacillus thermoglucosidasius C56-YS93] Length = 324 Score = 99.7 bits (247), Expect = 5e-19, Method: Composition-based stats. Identities = 41/294 (13%), Positives = 92/294 (31%), Gaps = 44/294 (14%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR----KSGDFDYRKITTKHIRSGVE-- 124 L + + ++ +L+ + S+E I + G + + T HIR + Sbjct: 6 LDFYLQDFLLYCQSKNLSPKTLSSYEQSLKLFIAYLKNEHGIEEVDAVRTGHIRQYIAYL 65 Query: 125 --------------------------SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPC 158 ++K + + ++ +++V F W + + NP Sbjct: 66 QERGKYTVVNREASRLINRPENRRDYNKKISNVTINNYIRNIKVFFNWLHEEGEIHKNPV 125 Query: 159 LSVERPKRKTEGIRPWTKED----MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGV 214 +++ K + + ++E+ + QF G + ++ L +G+R + V Sbjct: 126 DKIKQIKTERKQKAGISQEEFNLLLSQFDYTTFHGYRNKVITMLLQDTGMRIGECLALTV 185 Query: 215 QHLQ--NNIFSIKTQKTGTIITVE----LPDGFMKLLAMTP--IGKETFFINNDKQKMNA 266 + + + +K K V + + E F + Sbjct: 186 DDIDFKHRMILVKKTKGRKERYVYFSQVMARELKHYIRFKDRYTDTELLFPTTRNTPLTV 245 Query: 267 TQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320 F K + G++ H +R A G + L G +V E Sbjct: 246 HSFEKQLKQAGERIGLSIHPHQIRNNFARQYLLNGGDLYTLSRILGHSSVKVTE 299 >gi|220930346|ref|YP_002507255.1| integrase family protein [Clostridium cellulolyticum H10] gi|220000674|gb|ACL77275.1| integrase family protein [Clostridium cellulolyticum H10] Length = 307 Score = 99.7 bits (247), Expect = 5e-19, Method: Composition-based stats. Identities = 40/276 (14%), Positives = 94/276 (34%), Gaps = 19/276 (6%) Query: 67 KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126 K K +S++ + + ++ + + ++ + + + G Sbjct: 7 KKADWKKALSDFLLLKRAEGKSERTIKDYDKHVNIFFKRYPNA-LADLEASVL--GYMGE 63 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 P++ ++ F + ++ + NP + + + K + + I + +QQ + Sbjct: 64 NIKPATYNLRRAYLKCFFDYLKEEDIITSNPIIKLPKRKAQDKIIDI-PVDVLQQLLALP 122 Query: 187 SE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQ--KTGTIITVELP 238 + G ++ G+R ++ V N +I + KTG T+ L Sbjct: 123 DKSSFTGLVDHCLILLMMDCGIRPKEALTLKVSDFDIKHNCVTIPAELAKTGVSRTLPLS 182 Query: 239 ----DGFMKLLAMTPIG---KETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRK 291 K+++ P F + + +++ S FK + K G + + + +R Sbjct: 183 IETVRPITKVISSRPKDWNNNVPVFCSCSAETLDSEVLSRRFKRYSQKLGTDITPYSLRH 242 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 A G + L G T D Y +D Sbjct: 243 CFALYYLRNGGNSLMLQKIMGHTTQDMTRKYVALSD 278 >gi|315443040|ref|YP_004075919.1| site-specific recombinase XerD [Mycobacterium sp. Spyr1] gi|315261343|gb|ADT98084.1| site-specific recombinase XerD [Mycobacterium sp. Spyr1] Length = 403 Score = 99.7 bits (247), Expect = 5e-19, Method: Composition-based stats. Identities = 57/334 (17%), Positives = 110/334 (32%), Gaps = 39/334 (11%) Query: 19 GKI-IYYFRKGHGR-RIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76 GK+ + R R AY++ LT + EY++ PRK T + Sbjct: 34 GKVSRWRVRWVDATGAERTKSFQRKPDAQAYLNGLTADVQRGEYVD-PRKSAETFGTVAE 92 Query: 77 EYRKSAHWGSLAVNSRISFESYFDQI-IRKSGDFDYRKITTKHIRSGVESR--------- 126 ++ + + + S D + + K D +++ + + + + Sbjct: 93 QWFTTK--QHRKPKTVAGYRSLLDTVVLPKWEDVPLKRLDYESYSTWLGALSVDGGQRGA 150 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER----PKRKTEGIRPWTKEDMQQF 182 + S Q + + K+A R VA N L ++R P++ R + ++ Sbjct: 151 GLSASRITQAHQLVGAVLKYAQRTGKVAKNVALEIKRDEDLPEQAERERRYLSHAELLML 210 Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--------------TQK 228 L Y GLR ++ +H+ + + +++ T K Sbjct: 211 AKAADRFETLTLVLG---YCGLRFGEAVALRRRHVGDRVLTVRSSATAVTGKGIVESTTK 267 Query: 229 TGTIITVELPDGFMKLLAM-TPIGKETFFINNDKQKMNATQFSIW-FKAKATKAGVNK-S 285 T V +P+ K L P + K W F + G+ Sbjct: 268 TKRDRHVPVPEPVWKRLHAELPTDPNALVFPSRKGGFLPLGEYRWAFDNACAEVGIEGLV 327 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQA 319 HG+R +A+++ AGA + G T Sbjct: 328 PHGLRHTTASLAISAGANVKVVQRLLGHATAAMT 361 >gi|149199882|ref|ZP_01876911.1| phage integrase family protein [Lentisphaera araneosa HTCC2155] gi|149137053|gb|EDM25477.1| phage integrase family protein [Lentisphaera araneosa HTCC2155] Length = 441 Score = 99.7 bits (247), Expect = 5e-19, Method: Composition-based stats. Identities = 57/312 (18%), Positives = 107/312 (34%), Gaps = 36/312 (11%) Query: 44 IPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII 103 + + ++K + ++ +S L S+ + Y ++ Sbjct: 72 WDIFKKEAPALMKREPSPTKWKQKESCWNDF-KDFLESKEVEDLRQVSKSHAQEYV-GLL 129 Query: 104 RKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER 163 + SG F+ R I+ K + E ++ +PS+ +++T ++ +F + + INP + + Sbjct: 130 KDSGKFNKRIISKKGSYTS-EIKELSPSTINEYMTHIKQVFTLLHDRANLLINPFDGIPK 188 Query: 164 PKRKTEGIRPWTKEDMQQFKSF------WSEGSQP-------RLAFEFLLYSGLRCSDSC 210 K + + ++ + F W S P R F L +GLR D C Sbjct: 189 VDGKKKKRDVFEISELTKINDFLVKGKSWKYSSNPKLDILILRTLFIVGLNTGLRRGDIC 248 Query: 211 RAGVQ--HLQNNIFSIKTQKTGTIITVELPDGFMKLL--AMTPIGKETFFI--NNDKQKM 264 L N S++ KT +++ + M L G F + D + Sbjct: 249 MLDWPSVDLDKNRISLENSKTEVFVSIPISAPLMTFLNERHAITGGSGFVVPELADMYQN 308 Query: 265 NATQFSIWFKAKATKAGV--------------NKSAHGVRKFSATISADAGATAHELMAT 310 N+ S F+ K + NK H +R + G + EL Sbjct: 309 NSDGISYRFRQMLDKLKIKNTKEVTGRTVAVSNKDIHSLRHTFCYLHGIQGTSIQELQLM 368 Query: 311 YGWKTVDQAETY 322 G T E Y Sbjct: 369 TGHLTPKMTEAY 380 >gi|77454860|ref|YP_345728.1| putative transposase [Rhodococcus erythropolis PR4] gi|229492444|ref|ZP_04386248.1| putative transposase [Rhodococcus erythropolis SK121] gi|77019860|dbj|BAE46236.1| putative transposase [Rhodococcus erythropolis PR4] gi|229320673|gb|EEN86490.1| putative transposase [Rhodococcus erythropolis SK121] Length = 341 Score = 99.7 bits (247), Expect = 5e-19, Method: Composition-based stats. Identities = 28/224 (12%), Positives = 65/224 (29%), Gaps = 28/224 (12%) Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPC-------------LSVERPKRKTEGIRPWTKE 177 S+ + L S+ LF + + V NP + R + + Sbjct: 93 STIKRRLASISGLFSYLHERGLVEKNPVPRGLSTRSGRSHVRGTPLIRAPRRLPRVLSPD 152 Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITV 235 ++ + + R +L+ GLR + + ++ + K G V Sbjct: 153 EVNALLAALRC-ERDRAMVLLMLFGGLRRCEVLGLRMPDVRPGERRVFVAAGKGGHQRIV 211 Query: 236 ELPD-------GFMKLLAMTPIGKETFFIN----NDKQKMNATQFSIWFKAKATKAGVNK 284 + ++ + F+ ++A + G+ Sbjct: 212 PVAPTFFESLGRYLDAERPIDSATDHVFVVLKRPRRGNPLSAAGLDEILSGARVRGGLPH 271 Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 + H +R T ++G + A G +++ Y A+ Sbjct: 272 ATCHELRHTCFTRLRESGMALEAIQAQAGHASIESTRIYLHLAN 315 >gi|260907246|ref|ZP_05915568.1| phage integrase family protein [Brevibacterium linens BL2] Length = 319 Score = 99.7 bits (247), Expect = 5e-19, Method: Composition-based stats. Identities = 41/299 (13%), Positives = 92/299 (30%), Gaps = 42/299 (14%) Query: 68 PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD------------YRKIT 115 PTT+ ++S Y ++ ++ ++ + + I Sbjct: 4 PTTIAEVVSGYADHLRSRDVSAHTSRAYVADVSDFFDHTAHAPGAGDKSRAAELQVSDID 63 Query: 116 TKHIRSGV---ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172 +RS + + S+ + + +++ F + V Q ++ NP + PK+ + Sbjct: 64 LNDLRSWLITLDDAGAAKSTVARKIAAVKSFFAYCVNQHGLSNNPAARLRTPKKDSRLPT 123 Query: 173 PWTK----EDMQQFKSFWSEGS-----------QPRLAFEFLLYSGLRCSDSCRAGVQHL 217 + + + ++ +E + E L + +R S+ + Sbjct: 124 VLKPQQAADLVSRQRTVHTEADNSDPIEATKWVRDAAILEMLYATAVRVSELTGLNRGDV 183 Query: 218 QNNIFSIKT-QKTGTIITVELPDGFMKLLA---------MTPIGKETFFINNDKQKMNAT 267 + I K V L + + F+ ++ A Sbjct: 184 DHQRSMITVLGKGNKERRVPYGKPAQTALQKWLSLRDTFASESSGDALFLGVRGGRIGAR 243 Query: 268 QFSIWFKA--KATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 Q A + + HG+R +AT D GA ++ G T+ + YT Sbjct: 244 QVRELVHRYGAADPSAPDIGPHGLRHSAATHMLDGGADLRQIQELLGHSTMSSTQIYTH 302 >gi|121595275|ref|YP_987171.1| phage integrase family protein [Acidovorax sp. JS42] gi|120607355|gb|ABM43095.1| phage integrase family protein [Acidovorax sp. JS42] Length = 444 Score = 99.7 bits (247), Expect = 5e-19, Method: Composition-based stats. Identities = 64/346 (18%), Positives = 127/346 (36%), Gaps = 30/346 (8%) Query: 9 PFVTKERTRHGK----IIYYFRKGHGRRIRLPYPHESTFIPA------YMSALTGSTPKR 58 P + T G+ + Y G R+ R+ E T A +M+ + + Sbjct: 29 PGFLCKVTASGRKIFMLHYRTNSGERRKPRIGRFGELTVEQARSIAQDWMADVRKGSDPS 88 Query: 59 EYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTK 117 + R+ P T+K L +++ + ++ +++ + ++ I+ K G ++T Sbjct: 89 AAKQAARQAP-TVKELCTQFIEEYSKTRNKPSTVATYQDHINRYIVPKLGKIKVPELTRV 147 Query: 118 HIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAI--NPCLSVERPKRKTEGIRPWT 175 + + S+A + L +R +F A Y NPC V + + E R T Sbjct: 148 DVAEVMRDMAKISSTANRTLACLRKMFNMAEVWGYRPDGSNPCRHVPKYRENGE-TRYIT 206 Query: 176 KEDMQQFKSFWS-------EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKT 226 E++ + ++ E LA R S+ + N + Sbjct: 207 DEELARLYAYLDRADAEGLEHPTLTLAIRLQFEFSARMSEIRTLQWAWIDFENRRVAWPD 266 Query: 227 QKTGTIITVELPDGFMKLLAMTPIGKETFF----INNDKQKMNATQFSIWFKAKATKAGV 282 KTG I+ + + +LL+ +++ + I + + + + ++ +A V Sbjct: 267 SKTGG-ISKPMSEVAHQLLSNAERIEDSPYVCPSIYDGNLPLPSGTYYNSWRRILLRAKV 325 Query: 283 NK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 HG+R +AT A++G MA KTV Y D Sbjct: 326 PHVGTHGIRHRAATDIANSGVPLKVGMALTAHKTVSMFMRYVHAED 371 >gi|323499333|ref|ZP_08104310.1| super-integron integrase IntIA [Vibrio sinaloensis DSM 21326] gi|323315721|gb|EGA68755.1| super-integron integrase IntIA [Vibrio sinaloensis DSM 21326] Length = 320 Score = 99.7 bits (247), Expect = 5e-19, Method: Composition-based stats. Identities = 52/308 (16%), Positives = 97/308 (31%), Gaps = 62/308 (20%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134 I EY +S + A + ++ + + I SG K+ + + A Sbjct: 9 IKEYMQSRRY---APKTIQAYLLWITKFIAYSGMQHPSKLKEHEVEQFLTYLAVEEKVAA 65 Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT----EGIRPWTKEDMQQFKSFWSEGS 190 + + R+ + LSVE +K+ + K++M++F Sbjct: 66 KTQALALNAINFLYREYFRTP---LSVEMKFQKSLLDRKLPVVLNKQEMRRFVQHIDP-- 120 Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLLAMT 248 + +L L SGLR + R +Q + + +++ K G V L D + LL Sbjct: 121 RYKLHIMLLYGSGLRVMECVRLRIQDVDFHYKALRIWQGKGGKNRVVTLADELLPLLKQQ 180 Query: 249 PIGKETFFINN----------------------------------------------DKQ 262 ++ + + Sbjct: 181 QSVALAYYNKDIHSPGYEGVHLSNSLQRKYPGAELDFNWHFMFPSHKLSIDPESMGWKRH 240 Query: 263 KMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320 +N T K A AG++K + H +R AT ++GA + G V + Sbjct: 241 HINETALQRAVKRSAQDAGIDKNVTCHTLRHSFATHLLESGADIRTVQEQLGHSDVKTTQ 300 Query: 321 TYTKGADR 328 YT +R Sbjct: 301 IYTHVIER 308 >gi|257074479|ref|YP_003162877.1| integrase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257048700|gb|ACV37886.1| integrase family protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 322 Score = 99.7 bits (247), Expect = 5e-19, Method: Composition-based stats. Identities = 47/270 (17%), Positives = 92/270 (34%), Gaps = 31/270 (11%) Query: 90 NSRISFESYFDQIIRKSG---DFDYRKITTKHIRSGVES---RKHTPSSAIQFLTSMRVL 143 +R ++E+ ++ +G ++R + H+ + + R + + L ++ L Sbjct: 42 ATRRAYENALGDFMKFTGIVKPEEFRTVIRAHVIAWRDDLVQRALSGMTVRHRLAALSSL 101 Query: 144 FKWAVRQEYVAINPCLSVERPKRKT-EGIRPWTKED-----MQQFKSFWSEGSQPRLAFE 197 F+ + V NP V+RP ++ EG P + + +G + R Sbjct: 102 FESLCEKNAVTHNPVKGVKRPPVESYEGKTPALGDHQARKLLDAPDGASLKGKRDRAILA 161 Query: 198 FLLYSGLRCSDSCRAGVQHL---QNNIFSIKT-QKTGTIITVELPDG-------FMKLLA 246 LLY LR + CR V+ + + +K K G I V L ++++ Sbjct: 162 TLLYHALRRDELCRLTVKDYKHERRGVPHLKVFGKGGKIRYVPLHPAAGGLIGDYLEIAG 221 Query: 247 MTPIGKETFF------INNDK--QKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISA 298 F + + + +T G AH +R +AT + Sbjct: 222 HGADDAGALFRPLRNNCTTGGLERAITPDAVYKLVRQYSTALGFAIGAHALRATAATNAL 281 Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADR 328 D A ++ G + Y R Sbjct: 282 DHQADIAKVQEWLGHANIATTRIYDHRKTR 311 >gi|237733058|ref|ZP_04563539.1| conserved hypothetical protein [Mollicutes bacterium D7] gi|229383860|gb|EEO33951.1| conserved hypothetical protein [Coprobacillus sp. D7] Length = 286 Score = 99.7 bits (247), Expect = 5e-19, Method: Composition-based stats. Identities = 37/268 (13%), Positives = 89/268 (33%), Gaps = 23/268 (8%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133 LI Y+ ++ + + ++ + + + K K + + + P+S Sbjct: 10 LIVNYKNHLIDEEKSLATITKYIRDIEKFYQYADKKEVTKELVKLYKEELMK-SYKPTSI 68 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI----RPWTKEDMQQFKSFWSEG 189 L ++ F++ ++ ++ K + + +K++ ++ + + Sbjct: 69 NSMLAALNQFFEY---NGWLE----CKIKELKIQKRVFLEESKELSKDEYKRLVNAARKQ 121 Query: 190 SQPRLAFEF--LLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL-- 245 RL + +G+R + VQ L++ I G + + D ++L Sbjct: 122 KNERLYVLLQAICSTGIRVGEHRYITVQALKDGYAQI--YNKGKVREIFFSDDLKRILLK 179 Query: 246 --AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISADA 300 I F+ + ++ + K A V +S H +R A + Sbjct: 180 YCHKNKIENGAIFVTRSGRPLDRSNIWKAMKDLCDDAKVERSKVYPHNLRHLFAVTYYNL 239 Query: 301 GATAHELMATYGWKTVDQAETYTKGADR 328 L G ++D YT + R Sbjct: 240 KKDIARLADLLGHSSMDTTRIYTMSSGR 267 >gi|195940859|ref|ZP_03086241.1| shufflon-specific DNA recombinase [Escherichia coli O157:H7 str. EC4024] Length = 374 Score = 99.7 bits (247), Expect = 5e-19, Method: Composition-based stats. Identities = 45/274 (16%), Positives = 97/274 (35%), Gaps = 19/274 (6%) Query: 65 RKKPTTLKWLISEYRKSAHWGS---LAVNSRIS---FESYFDQIIRKSGDFDYRKITTKH 118 + + T+ + +Y K+ L R++ ++ + D + Sbjct: 6 KIRKMTISRALDKYVKTVSIHKKGHLQEFYRVNVIKRHPIAERYMDDITTVDIANYRDQR 65 Query: 119 IRSG--VESRKHTPSSAIQFLTSMRVLFKWA-VRQEYVAINPCLSVERPKRKTEGIRPWT 175 + R+ T ++ L + LF A V +NP V +PK + R T Sbjct: 66 LAQINPRTGRQITGNTVRLELALLSSLFNIARVEWGTCRMNPVELVRKPKISSGRDRRLT 125 Query: 176 KEDMQQFKSFWSEGSQP-RLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQKTGTI 232 + ++ ++ E +Q + F L + +R + +H+ + + T K G Sbjct: 126 SGEERRLSRYFKEKNQALYVIFHLALETAMRQGEILSLRWEHVDLQHGVAHLPTTKNGAP 185 Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRK 291 V L L M P +N + ++ F ++ + + N H +R Sbjct: 186 RDVPLSRKARNYLQMLPTQ-----LNGNIFSYTSSGFKSAWRTALQELKIENLHFHDLRH 240 Query: 292 FSATISADAG-ATAHELMATYGWKTVDQAETYTK 324 + + + G E+ A G ++++ + YT Sbjct: 241 EAISRFFELGTLNVIEVAAISGHRSLNMLKRYTH 274 >gi|71906676|ref|YP_284263.1| Phage integrase [Dechloromonas aromatica RCB] gi|71846297|gb|AAZ45793.1| Phage integrase [Dechloromonas aromatica RCB] Length = 338 Score = 99.7 bits (247), Expect = 5e-19, Method: Composition-based stats. Identities = 50/321 (15%), Positives = 100/321 (31%), Gaps = 21/321 (6%) Query: 16 TRHGKIIYYFRKG-HGRRI-RLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73 R ++ + GR++ R + + L ++ + K + K Sbjct: 5 KRKDSSCWWVKIIIDGRKVQRSTGTDDKIKAQEFHDRLKAQMWEQNRLGV--KARRSWKE 62 Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK--HIRSGVESRKHTPS 131 + + + + + + G +IT + ++ + Sbjct: 63 AVVRWLEETS----EKATHNEDKRKLIWLDTYLGKLMLDEITLDVIDSVRAAKLKEAAKA 118 Query: 132 SAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 + ++L MR + A + E++ P V K R T+E + Sbjct: 119 TTNRYLALMRSILLRARDEWEWIDKVP--KVRLFKESASRERSLTREQAGKLLEELP--Q 174 Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQKTGTIITVELPDGFMKLLA 246 R F L +GLR S+ + + K I++ L + +L Sbjct: 175 HQRDVVLFALATGLRQSNVLQLEWSQINLEQRHAWIHAWQSKNRRPISIPLNEAAYSVLI 234 Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAH 305 E+ + + + W + ++G++ H +R AT AG H Sbjct: 235 RQKGKHESRVFTFRGKPLESANTRAW-RKALLRSGIDNFRWHDLRHTWATWQRQAGTPTH 293 Query: 306 ELMATYGWKTVDQAETYTKGA 326 EL GW+T E Y A Sbjct: 294 ELQRLGGWRTGAMVERYAHLA 314 >gi|75812471|ref|YP_320090.1| Phage integrase [Anabaena variabilis ATCC 29413] gi|75705227|gb|ABA24901.1| Phage integrase [Anabaena variabilis ATCC 29413] Length = 343 Score = 99.7 bits (247), Expect = 5e-19, Method: Composition-based stats. Identities = 52/311 (16%), Positives = 104/311 (33%), Gaps = 35/311 (11%) Query: 49 SALTGSTPKREYINSPRKKPTTLKWL-ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG 107 A + + PT ++W+ + E+ +S +LA NSR +E + + Sbjct: 21 QAPSTLQEQSRSRGRKTSLPTDIRWIKVLEFLRS---TNLAPNSRKLYERELKRFLA-WT 76 Query: 108 DFDYRKITTKHI-------RSGVESRKHTP---SSAIQFLTSMRVLFKWA--VRQEYVAI 155 Y +++ +H+ R V++ P +S + +++ F W E + Sbjct: 77 QLHYHELSPRHLGLYKEYLRDEVKTDAGKPLSKASINAGVAALKSFFNWMCYTYPEIIVT 136 Query: 156 NPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE--GSQPR-LAFEFLLYSGLRCSDSCRA 212 NP L ++ K + T E M++ S ++ R A +L GLR + + Sbjct: 137 NPTLGIKLEKVPLPPAQSLTDEQMERVWSALELLGETKGRDTALVHILSHGLRAGEIVQL 196 Query: 213 GVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKE----------TFFINND-- 260 V + + KT V L +L + I++ Sbjct: 197 NVGSFDGKLLFLPDTKTNEPRLVPLRKESRDVLEAYLRSRREQGEELNSLTPLMISHHAS 256 Query: 261 --KQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVD 317 +++ + AG+ + H R AT G G ++ Sbjct: 257 YKGDRLSYHGIYFAVEKIGELAGIEDLHPHQFRHTYATELLLLGVDPSHARKLTGHQSEK 316 Query: 318 QAETYTKGADR 328 YT +++ Sbjct: 317 AFRRYTLRSEQ 327 >gi|323517745|gb|ADX92126.1| hypothetical protein ABTW07_1697 [Acinetobacter baumannii TCDC-AB0715] Length = 319 Score = 99.7 bits (247), Expect = 5e-19, Method: Composition-based stats. Identities = 57/321 (17%), Positives = 111/321 (34%), Gaps = 36/321 (11%) Query: 16 TRHGKIIYYFRKGHGRRIRLPYPHESTF-IPAYMSALTGSTPKREYINSPRKKPT-TLKW 73 R+G+I R TF A T + + TL+ Sbjct: 6 KRNGRITATVRIKPHPAK------SKTFNTKKEAKAWADETELQLKNEKEKIFTHITLRQ 59 Query: 74 LISEYRKSAHWG---SLAVNSRISFESYFDQIIRKSG-DFDYRKITTKHIRSGVESRKHT 129 I EYR + + +R +Q I+ D ++ + + + E R + Sbjct: 60 AIEEYRDTVSIHKKGGVKEVTR------LNQFIKIMNVDVSLSEVNKEFLVNFREYRLES 113 Query: 130 --PSSAIQFLTSMRVLFKWAVRQE-YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 P++ + L + +F W + ++ +++ +P V+ PK + + +++ F Sbjct: 114 VVPATVRRELLMLSGMFSWCIDKKLWLSSSPMDGVKLPKASNHREKVISDFEIETLLPF- 172 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDGFMKL 244 + + F L +G+R S+ C + + +KT K G V L + + Sbjct: 173 -LNDELKSIFLIALETGMRLSEICLLEWERIFLDKQYLVLKTTKNGRPREVPLNVIAVDI 231 Query: 245 LAMTPIGKETFFINNDKQKMN--ATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAG 301 + K + + S F KAG+ + + H R +AT A Sbjct: 232 FIGIGVKKS-------GRVFSYEPKYASADFMKARIKAGLYDFTFHDTRHTAATRIAPK- 283 Query: 302 ATAHELMATYGWKTVDQAETY 322 +L +GW +A Y Sbjct: 284 LPLLDLCKMFGWTDPKRAMVY 304 >gi|282920050|ref|ZP_06327778.1| hypothetical protein SASG_02692 [Staphylococcus aureus subsp. aureus C427] gi|282316221|gb|EFB46601.1| hypothetical protein SASG_02692 [Staphylococcus aureus subsp. aureus C427] Length = 390 Score = 99.7 bits (247), Expect = 5e-19, Method: Composition-based stats. Identities = 63/385 (16%), Positives = 128/385 (33%), Gaps = 62/385 (16%) Query: 17 RHGKIIYYFRK---GHGRRIRLPYPHESTF----IPAYMSALTGSTPKREYINSPRKKPT 69 + G + +R + Y S F + + + + +P + Sbjct: 6 KRGNT-WRYRISLGKDAETGKYKYISNSGFKRKSDAKHHAEMVERQLRNGEYIAP--STS 62 Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129 T K + ++ S + + V+S + E + I + + + I + V Sbjct: 63 TFKQVADDWI-SQYANEVKVSSVRAREKAINHAIERFNNKPIQTINKHEYQRFVNDISAQ 121 Query: 130 PSSA--IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK--------TEGIRP-WTKED 178 S + S ++FK+A + + I P ++RPK+K TE + K++ Sbjct: 122 YSKNYVDSIIASTNMIFKYAYDMKLIRILPSEGIKRPKKKVSVEELEDTEIYKKFLEKDE 181 Query: 179 MQQFKSFWSEGSQPRLAFEF---LLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQ------ 227 + QF P+ +FE L Y+G+R + + NN +I Sbjct: 182 LFQFLEIAKNHHSPQNSFEVFCTLAYTGMRAGELLALKWSDIDFENNTINITKTYYNPNN 241 Query: 228 ----------KTGTII-TVELPDGFMKLLAMTPI------------GKETFFINNDKQKM 264 KT + I + + +KLL F + + + Sbjct: 242 NKKQYQILTPKTESSIGKISVDPHVIKLLKNYKTDVQDTWKNELYVDNNFVFTDVNGYPL 301 Query: 265 NATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE- 320 + +W KA K + S H R + +AG E+ K ++ Sbjct: 302 VIKKLQLWIKAILKKTDITNKQISTHSFRHTHCALLIEAGVHIKEIQERLRHKDINTTMN 361 Query: 321 TYTKGADRIRLGIKNSRRISSVVDS 345 Y K + + S++ S ++++ Sbjct: 362 IYAKITNSYKK--DASQKFSKLMEN 384 >gi|115522171|ref|YP_779082.1| tyrosine recombinase XerD [Rhodopseudomonas palustris BisA53] gi|115516118|gb|ABJ04102.1| tyrosine recombinase XerD subunit [Rhodopseudomonas palustris BisA53] Length = 326 Score = 99.7 bits (247), Expect = 5e-19, Method: Composition-based stats. Identities = 51/302 (16%), Positives = 97/302 (32%), Gaps = 46/302 (15%) Query: 74 LISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGV---ESRK 127 LI + A N+ ++ S + G T +R+ + ++R Sbjct: 11 LIELFLDMLAAEQGAGKNTLDAYRSDLADLAAFLGHAKTSLSGADTHALRAYLIDLDARG 70 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + +S + L+++R LF++ + + A +P + PKR + + D+ + Sbjct: 71 YKSASVARKLSALRHLFRFLLTERVRADDPAAILSGPKRGRGLPKVMSIADVDRLLEHAK 130 Query: 188 --------EGSQPRLA-----FEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTII 233 G Q R A E L +GLR S+ V + + + K Sbjct: 131 RLAEAPGRAGEQVRAARLYCLLEVLYATGLRVSELVSLPVSAARRDARMIVVRGKGNKER 190 Query: 234 TVELPDGFMKLLAM-----------------------TPIGKETFFINNDKQKMNATQFS 270 V L + + +A K F + + + F+ Sbjct: 191 LVPLNESSKRAMAAYLEAIAAQDRERDKEKGKAKPGKAAAQKWLFPSSGESGHLTRQHFA 250 Query: 271 IWFKAKATKAGVNK---SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 K A AG++ S H +R A+ GA + G + + YT + Sbjct: 251 RELKELAAAAGLSARLISPHVLRHAFASHLLHNGADLRIVQTLLGHTDISTTQIYTHVVE 310 Query: 328 RI 329 Sbjct: 311 ER 312 >gi|288941419|ref|YP_003443659.1| integrase family protein [Allochromatium vinosum DSM 180] gi|288896791|gb|ADC62627.1| integrase family protein [Allochromatium vinosum DSM 180] Length = 398 Score = 99.7 bits (247), Expect = 5e-19, Method: Composition-based stats. Identities = 50/302 (16%), Positives = 92/302 (30%), Gaps = 16/302 (5%) Query: 45 PAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR 104 A ++ + + + + T + L Y + G + ++ Sbjct: 74 RAELAKVETQGADPLAVRQRQAQGETFRDLCQTYME--RHGQAKKSGTDDQRRIDRHLLP 131 Query: 105 KSGDFDYRKITTKHIRSGVES-RKHTPSSAIQFLTSMRVLFKWAVRQEYVA---INPCLS 160 G +T + + K P A + L + +F A R +V NP Sbjct: 132 LWGSLKVPAVTRADVAALHSKIGKAHPYEANRVLALLSKMFDLARRWGFVPEGHPNPARD 191 Query: 161 VERPKRKTEGIRPW-TKEDMQQFKSFWSEGSQPRLAFEFLLY--SGLRCSDSCRAGVQHL 217 ++R K W T E++ + +E F LY +G R S+ RA + Sbjct: 192 IDRFKEAKRDR--WVTPEELPRLAQAINEEPNQSARFGLWLYLLTGARKSELLRARWDDV 249 Query: 218 Q--NNIFSIKTQKTGTIITVELPDGFMKLLAMTPI--GKETFFINNDKQKMNATQFSIWF 273 I K G + + L + LL P G W Sbjct: 250 DWTRAELRIPDTKAGRVHYIPLSAAALALLREIPRVAGNPHILPGKLDGAHLVNINKPWD 309 Query: 274 KAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLG 332 + + + H +R+ + A AG + H + Y + G D +R Sbjct: 310 RVRRAAGVEDVRVHDLRRTVGSWLAQAGNSLHLIGRVLNHSNQSTTAIYARFGEDSVRAA 369 Query: 333 IK 334 ++ Sbjct: 370 LE 371 >gi|297748991|gb|ADI51537.1| Integrase/recombinase (XerC/CodV family) [Chlamydia trachomatis D-EC] gi|297749871|gb|ADI52549.1| Integrase/recombinase (XerC/CodV family) [Chlamydia trachomatis D-LC] Length = 308 Score = 99.7 bits (247), Expect = 5e-19, Method: Composition-based stats. Identities = 31/224 (13%), Positives = 71/224 (31%), Gaps = 23/224 (10%) Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 K + ++ + L +++V F + + + P +E PK + E++ Sbjct: 73 HKAKESETTLARRLIALKVFFHFLKDAKMLDQQPF--IEHPKIWKRLPSILSTEEVNSLL 130 Query: 184 SFWS--------EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235 S+ +G+R S+ C + + ++ + + T + V Sbjct: 131 DQPLNIPNLDTHIASRDAAILYTFYATGIRVSELCDLCIGDISDDFIRVTGKGRKTRL-V 189 Query: 236 ELPDGFMKLLAM-----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284 + + + +E F++ +K++ + A + Sbjct: 190 PISIKAKQAIDAYLSSFRDELQKKNPSEEHVFLSIRGKKLDRSCVWKRITFYAKLVTTKR 249 Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 S H +R AT + A + G + E YT A Sbjct: 250 ISPHSLRHAFATHLLNNHADLRIIQEMLGHSRISSTEIYTHVAS 293 >gi|254426076|ref|ZP_05039793.1| Phage integrase, N-terminal SAM-like domain protein [Synechococcus sp. PCC 7335] gi|196188499|gb|EDX83464.1| Phage integrase, N-terminal SAM-like domain protein [Synechococcus sp. PCC 7335] Length = 326 Score = 99.7 bits (247), Expect = 5e-19, Method: Composition-based stats. Identities = 48/288 (16%), Positives = 100/288 (34%), Gaps = 26/288 (9%) Query: 85 GSLAVNSRISFESYF----DQIIRKSGDFDYRKITT--KHIRSGVESRKHT--PSSAIQF 136 LA N+R +E + + + +R I +H+++ R + P++ Q Sbjct: 39 RELAENTRKVYERQLRQFYEWVKKPWQQVTHRDIDRYKQHLKALPSKRGGSLSPATINQS 98 Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF---KSFWSEGSQPR 193 + S++ FKW ++Y++ NP L++E+ K + + + ++ ++ E Sbjct: 99 INSLKSFFKWLTVKDYISRNPTLTIEQLKDAPKPPKDLDEAEVDALFDGLNYRGESEVRD 158 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA------- 246 LA LL GLR + ++ + K G+ V L + L Sbjct: 159 LAILQLLSHGLRAGEVSALNIEDYDGKRVHVLGAKWGSDGKVPLKPEAIMALDSYLGWLV 218 Query: 247 ---MTPIGKETFFI----NNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISA 298 M + + N+ +++ K A + + + H +R AT Sbjct: 219 RQGMATTPESPLLVSLSRNSRGKRLGYRGIYDLVKELAAASELEDVHPHRLRHTCATSLV 278 Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSD 346 G + K+ Y+ A +++ DS Sbjct: 279 AQGMDSILAKRLVRIKSDRVFARYSDHALDMKMEEAFDELYGQSQDSR 326 >gi|81428201|ref|YP_395201.1| site-specific recombinase, prophage lsa1 integrase [Lactobacillus sakei subsp. sakei 23K] gi|78609843|emb|CAI54890.1| Site-specific recombinase, prophage lsa1 integrase [Lactobacillus sakei subsp. sakei 23K] Length = 385 Score = 99.7 bits (247), Expect = 5e-19, Method: Composition-based stats. Identities = 52/303 (17%), Positives = 101/303 (33%), Gaps = 47/303 (15%) Query: 87 LAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESR-KHTPSSAIQFLTSMRVLF 144 + ++ + F + I+ G + R ITT +++ + K T S + +F Sbjct: 84 VRESTMYKQKKVFQNHILPAFGKYRIRTITTSQVQTTLNKWFKQTDYSFKPWFNYTSAIF 143 Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIR--PWTKEDMQQFKSFWSE--GSQPRLAFEFLL 200 K+A+ Q Y+ NPC V PK+ + W K+ ++ F + + F L Sbjct: 144 KYAILQGYIKDNPCTRVTMPKKLDKEDTLNFWDKDQLKTFFNGIDPVNDLEKYTLFRVLA 203 Query: 201 YSGLRCSDSCRAGVQHL----------------QNNIFSIKTQKTGTIITVELPDG---- 240 ++G+R + L I+ KT V D Sbjct: 204 FTGIRRGECLSLTWDDLNVQKATLDINKTLTHGDKGRLLIQPTKTKKGTRVISLDESTLL 263 Query: 241 ------------FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK---- 284 ++ L + F + + S W +A A + Sbjct: 264 YLKKWHLEQRRMYLMLGYNINKSNQLIFATSKNTFKSLNTPSKWLRALIDDANKSGANLP 323 Query: 285 --SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISS 341 + HG R A+ AGA+ E+ G + YT ++ G + +++ + Sbjct: 324 SITVHGFRHSHASALFSAGASIKEVQERLGHEDAQTTLNIYTHVTEKQ--GQEAVQKLVN 381 Query: 342 VVD 344 ++ Sbjct: 382 FLN 384 >gi|310658536|ref|YP_003936257.1| site-specific integrase/recombinase [Clostridium sticklandii DSM 519] gi|308825314|emb|CBH21352.1| putative site-specific integrase/recombinase [Clostridium sticklandii] Length = 334 Score = 99.7 bits (247), Expect = 5e-19, Method: Composition-based stats. Identities = 39/290 (13%), Positives = 96/290 (33%), Gaps = 41/290 (14%) Query: 87 LAVNSRISFESYFDQIIRKSGDFDYRKITTK--HIRSGVESRKHTPSSAIQFLTSMRVLF 144 L + + + S + + ++ D I + H+ S ++ S + M++ F Sbjct: 47 LDIKTFFDYCSISEILSQEITDIRPIHINSYYTHLVSVRDNNSI---SIKRKKYVMKLFF 103 Query: 145 KWAVRQEYVAINPCLS---VE-RPKRKTEGIRPWTKEDMQQFKSFW-----SEGSQPRL- 194 + Q + NP ++ + K + E++++ +E ++ R Sbjct: 104 DFLEEQNEINKNPIPKDSVIKAKIKNPYKAPTYLEIEEIKKINKAILDTNKNEFTKIRNL 163 Query: 195 -AFEFLLYSGLRCSDSCRAGVQHLQNNIFS---IKTQKTGTIITVELP------------ 238 F L+++GLR +++ + + I + K + + Sbjct: 164 FIFNLLIHTGLRINEALNLDLSDFEQGINTNRLYVKGKGEKERYLPIELNSTFFQIYEEG 223 Query: 239 ------DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290 + + L T FI+ ++ + + A +NK + H +R Sbjct: 224 FVYNFAERYFTLRNKTKTSNCALFISKRGDRLTSRYVQKNLQELRLSANLNKNVTPHKLR 283 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340 AT G + G ++ + YT + L + ++ + Sbjct: 284 HTFATHLLKNGTNIRLVQELLGHSSISTTQIYTHS-NSKDL-DEAIKKFT 331 >gi|331680860|ref|ZP_08381500.1| shufflon-specific DNA recombinase [Escherichia coli H299] gi|331081848|gb|EGI53006.1| shufflon-specific DNA recombinase [Escherichia coli H299] Length = 389 Score = 99.7 bits (247), Expect = 5e-19, Method: Composition-based stats. Identities = 46/274 (16%), Positives = 95/274 (34%), Gaps = 19/274 (6%) Query: 65 RKKPTTLKWLISEYRKSAHWGS---LAVNSRIS---FESYFDQIIRKSGDFDYRKITTKH 118 + + +L + +Y K+ L R++ D+ + + D + Sbjct: 6 KIRKMSLSRALDKYLKTVSVHKKGHLQEFYRVNVIKRHPMADRYMDEITTIDIAGYRDQR 65 Query: 119 IRSG--VESRKHTPSSAIQFLTSMRVLFKWA-VRQEYVAINPCLSVERPKRKTEGIRPWT 175 + R+ T ++ L + LF A V +NP V +PK R T Sbjct: 66 LAQINPRTGRQITGNTVRLELALLSSLFNIARVEWGTCRMNPVELVRKPKISNGRDRRLT 125 Query: 176 KEDMQQF-KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQKTGTI 232 + ++ + F + Q + F L + +R + +HL + + K G+ Sbjct: 126 SGEERRISRYFRDKNPQLYVIFHLALETAMRQGEILSLRWEHLDLQHGVAHLPETKNGSP 185 Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRK 291 V L L + P IN + ++ F ++ + N H +R Sbjct: 186 RDVPLSRKARNYLQILPQQ-----INGNVFSYTSSGFKSAWRTALLDLKIENLHFHDLRH 240 Query: 292 FSATISADAG-ATAHELMATYGWKTVDQAETYTK 324 + + + G E+ A G ++++ + YT Sbjct: 241 EAISRLFELGTLNVMEIAAISGHRSLNMLKRYTH 274 >gi|289425363|ref|ZP_06427140.1| site-specific recombinase, phage integrase family [Propionibacterium acnes SK187] gi|289154341|gb|EFD03029.1| site-specific recombinase, phage integrase family [Propionibacterium acnes SK187] Length = 442 Score = 99.7 bits (247), Expect = 5e-19, Method: Composition-based stats. Identities = 58/373 (15%), Positives = 115/373 (30%), Gaps = 51/373 (13%) Query: 23 YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSA 82 +Y + G +R+R + L PR TL ++ + + Sbjct: 49 FYDKNGTKQRVRGRGATRAEATKRLNKNLRQRIDGTRTATGPRGGL-TLNQWVNIWLATK 107 Query: 83 HWGS-LAVNSRISFE-SYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA-IQFLTS 139 + + + Y I K G +++T + I+ + + + + + Sbjct: 108 QASEQMKPQTAQQHKIRYKQWIAPKLGSRPVKRLTAEEIQEVIAAGAQQGHAIPVNIFKT 167 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEG-------IRPWTK--EDMQQFKSFWSEGS 190 M AV+ V +NP + P++++ I W++ + M ++ + Sbjct: 168 MNAALNSAVKAGEVDLNPMKQLTPPRQRSAAGEKDTAHIEYWSRIMDKMCKWLAQPECEL 227 Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQ---------------KTGTII 233 R + GLR ++ N +IK Q KTG Sbjct: 228 HDRYTLTIAMLLGLRRAELLGLTWDCFDECMNKLTIKQQLMRQNDGSYIIQNSTKTGKNR 287 Query: 234 TVELPDGFMK---------LLAMTPIGKETFFINNDKQKMNATQFSIWFKA----KATKA 280 T+ LP+ + + L A P F+ + ++ ++ K Sbjct: 288 TLMLPERWKEAFLLQRQKSLTAAAPEWNNLVFLTPAGSPITYPMYNKLWRNTIVTYMAKE 347 Query: 281 GVNK-------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT-KGADRIRLG 332 G H RK A+ A G M+ G + YT AD+ R Sbjct: 348 GQEWKEEQHYWRPHTCRKMCASWLAWGGVDIQTAMSILGHSSEAMTLYYTIINADQQRKA 407 Query: 333 IKNSRRISSVVDS 345 ++ + + Sbjct: 408 LEGLSNVYEHHNV 420 >gi|257870032|ref|ZP_05649685.1| phage integrase [Enterococcus gallinarum EG2] gi|257804196|gb|EEV33018.1| phage integrase [Enterococcus gallinarum EG2] Length = 390 Score = 99.7 bits (247), Expect = 5e-19, Method: Composition-based stats. Identities = 50/344 (14%), Positives = 111/344 (32%), Gaps = 52/344 (15%) Query: 42 TFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGS-LAVNSRISFESYFD 100 AY + +S + L E+ K + + + ++ + + Sbjct: 42 EAKQAYSRLMVKVQENDVVTDSNKL----FSELAEEWMK--QYKNTVKESTYVVQRLAME 95 Query: 101 -QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCL 159 I+ G+ KIT + V + + + +FK+A+ V NP Sbjct: 96 KHILPIFGELKISKITIPFCQKQVNNWYSYYTKYSNLIGLTSSVFKYAISLRLVRSNPMN 155 Query: 160 SVERPKRKTEGIR------PWTKEDMQQFKSFWSEGSQP-RLAFEFLLYSGLRCSDSCRA 212 + RPKRK + + K+++ +F +P F L ++GLR + Sbjct: 156 GIIRPKRKKKIDEEAFVAPYYAKDELLEFLDIVKAFPEPIYPMFRILAFTGLRKGELLGL 215 Query: 213 GVQHLQ---------------NNI-FSIKTQKT-GTIITVELPDG--------------- 240 + + + + KT ++ T+ L D Sbjct: 216 RYKDIDFQNKTLSVKQTLATVDGWKLEFQVPKTEKSLRTISLDDETLKVIKKHMIKQKAF 275 Query: 241 -FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISA 298 L G++ F + + + + + + + + HG R ++ Sbjct: 276 FLEHGLKTKENGEQLLFATFENKPYYLDFVNHNLERIIKEHNLKRITPHGFRHTHCSLLF 335 Query: 299 DAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISS 341 ++GA+ E+ A G + + Y + R + + R ++ Sbjct: 336 ESGASIKEVQARLGHTDIKTTMDIYNHLS--KRQTEETANRFAN 377 >gi|332176048|gb|AEE25301.1| integrase family protein [Glaciecola agarilytica 4H-3-7+YE-5] Length = 286 Score = 99.7 bits (247), Expect = 5e-19, Method: Composition-based stats. Identities = 35/255 (13%), Positives = 82/255 (32%), Gaps = 15/255 (5%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLF 144 L+ ++I + ++ T + +R + +S I ++ L Sbjct: 22 RRLSPKTQIGYIRGVKKLAAYL-KRSPEDATAEELRQFQLALAEQGASNITINATLSGL- 79 Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF-KSFWSEGSQPRLAFEFLLYSG 203 K+ + ++ L V + +KE+++Q + + + + AF +G Sbjct: 80 KFLFHKTLNLLDVMLKVSTVPVPRKLPTVLSKEEVKQLIDATHTI--KYKAAFSVAYGAG 137 Query: 204 LRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLLAMTPIGKETF---FIN 258 LR + V + ++ ++ K L + ++ Sbjct: 138 LRIGEVVALKVTDIDSSRMLLRIEQGKGKKDRMAMLLTTLCQWYKHAKAHHLMLNGGWLF 197 Query: 259 NDKQKMNA---TQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGW 313 + +N Q S +K+ AG+ K S H +R A + + G Sbjct: 198 PGQNPLNPIGTRQLSRAWKSACIDAGLTKKVSMHTLRHSFAMHLLEDKVDIRVIQTLLGH 257 Query: 314 KTVDQAETYTKGADR 328 ++ Y + A + Sbjct: 258 SKLETTALYAQVASK 272 >gi|291557595|emb|CBL34712.1| Site-specific recombinase XerD [Eubacterium siraeum V10Sc8a] Length = 282 Score = 99.7 bits (247), Expect = 6e-19, Method: Composition-based stats. Identities = 42/274 (15%), Positives = 100/274 (36%), Gaps = 18/274 (6%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK---H 128 K + R A +L + + S +R G + +T + S + +++ Sbjct: 3 KDIFESIRNEAEKRNLRERTIQLYCSDVSYFLRWIG-KNVSDLTLEDAESFLTAKRLEGR 61 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 +P + + ++++ L+K ++ + +V KR+ +++++ Sbjct: 62 SPETHNHYRSAIKFLYKKVLKILWDDD----TVPAMKRERNLPVVLSRDEINAIIDATP- 116 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL------PDGFM 242 + + + SGLR S+ + +I ++T I D Sbjct: 117 NLKHKAIIATMYSSGLRVSEVVHLHYDDISRTNMTIHVRETKGRIDRYTILSQKNLDLLT 176 Query: 243 KLLAMTPIGKETFFINND-KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299 + K+ F ++ ++ + +FK A AG+N+ S+H R A+ + Sbjct: 177 EYWYKCGRPKDILFPSSWSGGYLDIASVNQFFKKSAKLAGINRHVSSHACRHSFASHLFE 236 Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 +G + + G + Y +++ LGI Sbjct: 237 SGTDIKYIQSLLGHVDPRSTDVYLHVSNKTLLGI 270 >gi|283479897|emb|CAY75813.1| Tyrosine recombinase xerD [Erwinia pyrifoliae DSM 12163] Length = 351 Score = 99.7 bits (247), Expect = 6e-19, Method: Composition-based stats. Identities = 44/289 (15%), Positives = 105/289 (36%), Gaps = 32/289 (11%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFE---SYFDQIIRKSGDFDYRKITTKHIRSGV--- 123 TL+ L + + + + F G +++ + + Sbjct: 20 TLRQLAESWLAHLVVAGRSARTAQGYGERVXAFLAWCEPRGITYAPQVSLAVLEAYQRWL 79 Query: 124 ------ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI-RPWTK 176 + ++ +S + L+++R+LF+W +++ ++ +P +E PK + + +++ Sbjct: 80 QGYRRADGKQLVVNSQLHRLSAVRMLFRWLLKRHHILYSPAEQLELPKEERRLPAQVFSE 139 Query: 177 ED----MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTG 230 + +Q + G + R E L SG+R S+ + + + +++ K G Sbjct: 140 AETRRVLQSLDAGTPPGLRXRAILELLWSSGIRRSELAGLLLSDVDFTRGVVNVRRGKGG 199 Query: 231 TIITVEL----PDGFMKLLA------MTPIGKETFFINNDKQKMNATQFSIWF-KAKATK 279 V + + L FI++ + + +A + Sbjct: 200 KDRVVPVGHTALMWLXRYLKDVRPRLAQRFDSGHLFISHKGTGLAHGTLTAMAGRAIRSG 259 Query: 280 AGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 A + K+ H R AT + GA + A G + ++ + YT+ A Sbjct: 260 AHLKKAGACHIFRHXMATQMLENGADTRHIQAILGHEKLETTQIYTRVA 308 >gi|163753743|ref|ZP_02160866.1| tyrosine type site-specific recombinase [Kordia algicida OT-1] gi|161325957|gb|EDP97283.1| tyrosine type site-specific recombinase [Kordia algicida OT-1] Length = 428 Score = 99.7 bits (247), Expect = 6e-19, Method: Composition-based stats. Identities = 38/250 (15%), Positives = 87/250 (34%), Gaps = 16/250 (6%) Query: 86 SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHTPSSAIQFLTSMR 141 + ++ ++S+ ++ ++IT + IR+ + + R+ + S Q + +++ Sbjct: 165 RYSESTIKIYKSFLSIFFTYHYAYEPQEITNEMIRTYMRYLVQEREISESYQNQMINAIK 224 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY 201 + + ++RPKR ++++ Q + + + Sbjct: 225 FYY----EKVLGGKQQTYFIDRPKRSKPLPIVLSQKETIQLLKSIP-NLKHKTILTVIYS 279 Query: 202 SGLRCSDSCRAGVQ--HLQNNIFSIKTQKTGTIITVEL---PDGFMKLLAMTPIGKETFF 256 GLR S+ + +L+ N I K V L +K+ + Sbjct: 280 CGLRVSELIDLKLSSIYLEENKIHIVAGKGKKDRYVTLAVRTKKLIKIYIKKYAPEHYLI 339 Query: 257 INNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWK 314 K + + K + +AG+ K + H +R AT + G + + G + Sbjct: 340 EGQKGGKYATSSIQKFIKKYSNEAGLTKNVTPHTLRHSFATHLLEKGISLRYIQYILGHQ 399 Query: 315 TVDQAETYTK 324 E YT Sbjct: 400 NSKTTEIYTH 409 >gi|319955952|ref|YP_004167215.1| integrase family protein [Nitratifractor salsuginis DSM 16511] gi|319418356|gb|ADV45466.1| integrase family protein [Nitratifractor salsuginis DSM 16511] Length = 284 Score = 99.7 bits (247), Expect = 6e-19, Method: Composition-based stats. Identities = 42/252 (16%), Positives = 88/252 (34%), Gaps = 11/252 (4%) Query: 85 GSLAVNSRISFESYFDQIIRKSG-DFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVL 143 + + ++E Q+++ + +++ + +TP + + L+++R Sbjct: 16 RGYSERTVATYELPLRQMLQYHRLKREGKQLILDIMPLRRRIASNTPRTVAKKLSAVRSF 75 Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSG 203 ++ Q ++I E K +P + +++ RL L G Sbjct: 76 VRYLQDQRNLSI-LLEGDESVKVPRTLPKPIEERYIREVLEAADP--TERLILGLLYGMG 132 Query: 204 LRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG----FMKLLAMTPIGKETFFINN 259 LR S+ + + I K G + LP LA+ P G + Sbjct: 133 LRISELAGLRREQIDREWIRIH-GKGGKTRQLPLPQAVLQMLDHYLALHPAG--VYLFEK 189 Query: 260 DKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319 K ++A Q + G+ + H +R AT D GA ++ G ++ Sbjct: 190 GKAPLSAAQIRYRVQKLFRSRGIKATPHQLRHSFATHLLDHGARISDVSELLGHASMATT 249 Query: 320 ETYTKGADRIRL 331 + YT+ +L Sbjct: 250 QIYTQLGSSRKL 261 >gi|329848271|ref|ZP_08263299.1| phage integrase family protein [Asticcacaulis biprosthecum C19] gi|328843334|gb|EGF92903.1| phage integrase family protein [Asticcacaulis biprosthecum C19] Length = 442 Score = 99.7 bits (247), Expect = 6e-19, Method: Composition-based stats. Identities = 53/377 (14%), Positives = 101/377 (26%), Gaps = 80/377 (21%) Query: 19 GKIIY--YFRKGHGRRIRLPYPHESTFIPAYMSALT-------GSTPKREYINSPRKKPT 69 G+ +Y +R G +RI H S + P G+ + Sbjct: 42 GRKVYAVKYRLGKAQRIFTIGTHGSPWTPEKAREKATAVLKDVGNNIDPAAEKLADRHAM 101 Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESY---------FDQIIRKSGDFDYRKITTKHIR 120 T+ L+ EY ++ + + II G ++T + Sbjct: 102 TVADLVKEY------IERGPQTKANKRAVSWAADESCLRRHIIPTVGKDAADRLTNEGAA 155 Query: 121 SGVES----------RKHTPSS----------AIQFLTSMRVLFKWAVRQEYVAINPCLS 160 + + + P A + + +F W ++ V NP Sbjct: 156 KAIYAIRMGKTAVVEKSDKPRGKAVVTGGEAVARRTRSVAAAMFAWGIKHGLVKRNPFTG 215 Query: 161 VERPKRKTEGIRPWTKED----MQQFKSFWSEGSQPRL---AFEFLLYSGLRCSDSCRAG 213 ++ P + R ++ + + +EGS R+ A LL +G R S+ Sbjct: 216 IDLPAAPVKE-RFLSQAEAGAFLDALAGLEAEGSVDRVYGDALRLLLLTGARKSEIANLT 274 Query: 214 VQ--HLQNNIFSIKTQ------KTGTIITVELPDGFMKLLAMTPIGKETF---------- 255 + + KTG + +P L + Sbjct: 275 WSEVDFDRRCLVLPPERTKAGGKTGERRIMLMPAALEILSRRYKARSDYVGIDGKPLDLP 334 Query: 256 -------FINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHEL 307 +N + F A + H +R A+ + GA+ + Sbjct: 335 LVFPSPRTLNTTGGPIV--GLRRIFAKACLAADIKGVRLHDMRHSFASFAVAGGASLFLV 392 Query: 308 MATYGWKTVDQAETYTK 324 G E Y Sbjct: 393 SKLLGHSNSRTTERYAH 409 >gi|298252084|ref|ZP_06975887.1| integrase family protein [Ktedonobacter racemifer DSM 44963] gi|297546676|gb|EFH80544.1| integrase family protein [Ktedonobacter racemifer DSM 44963] Length = 362 Score = 99.7 bits (247), Expect = 6e-19, Method: Composition-based stats. Identities = 42/296 (14%), Positives = 88/296 (29%), Gaps = 45/296 (15%) Query: 72 KWLISEYRK---SAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG---VES 125 W + EY + SAH ++ S + + ++I + G+ + + I+ + Sbjct: 42 AWTVQEYLEYWLSAHGPTIRAISLMGYRHAVNRINKIVGNVKLKALKADKIQLAYGTMLK 101 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 P + T + AV EY+ NP V PK ++ ++ Sbjct: 102 NGFKPRTIQTTHTIFAIALNDAVDWEYLPSNPASKVTPPKAGKREYTLLDMDEAKRLIDA 161 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ---------------------NNIFSI 224 + + R + +G+R ++ + I Sbjct: 162 AGD-TPIRAIIALAVGTGMRKAEITALKWSSIDLDAKKLYVAEGAVYVKLDETPGQIVEN 220 Query: 225 KTQKTGTIITVELPDGFMKLLAMTP--------------IGKETFFINNDKQKMNATQFS 270 + + ++ LPD + L + F N + + Sbjct: 221 DPKTSSGRRSLTLPDFVIDELRAHKIRQKEQRLKAGAAWVDHGLVFTNRRGGHIYV-SIN 279 Query: 271 IWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTK 324 FK +AG+ + H +R A+I G + G ++ Y+ Sbjct: 280 EMFKRVLAQAGLPDMRLHDLRHSLASILLAMGVHPKVVQEILGHSSITITMNIYSH 335 >gi|116254158|ref|YP_769996.1| site-specific tyrosine recombinase XerC [Rhizobium leguminosarum bv. viciae 3841] gi|115258806|emb|CAK09912.1| putative tyrosine recombinase [Rhizobium leguminosarum bv. viciae 3841] Length = 299 Score = 99.7 bits (247), Expect = 6e-19, Method: Composition-based stats. Identities = 53/278 (19%), Positives = 91/278 (32%), Gaps = 29/278 (10%) Query: 82 AHWGSLAVNSRISFESYFDQIIRKS-GDF-------DYRKITTKHIRSGVESRKHTPSSA 133 A L+ ++ ++E Q + G D R++ R+ + +R+ S A Sbjct: 12 ARERRLSEHTLDAYERDTRQFLTFLTGHLAGPATLRDIRELRPADFRAFLAARRKQGSGA 71 Query: 134 IQF---LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK-------EDMQQFK 183 L +R L + ++ V +V PK+ +P + D Q Sbjct: 72 RSLGRNLAGLRSLLRHLEKKGLVNAAGAAAVRSPKQPKSLPKPLSDTQAITVVSDEAQLH 131 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELP---- 238 ++ L GLR S++ LQ +++ T K V L Sbjct: 132 DEPWIAARDAAVMTLLYGCGLRISEALDLTPADLQKGATTLRITGKGNKTRLVPLLSVVF 191 Query: 239 DGFMKLLAMTP---IGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFS 293 D K A+ P E F K+ A + + G+ + H +R Sbjct: 192 DAVEKYRALCPYHLESGEPLFRGARGGKLQAAIIQRTMQKMRSAFGLPETATPHALRHSF 251 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 AT G + G ++ + YT G D RL Sbjct: 252 ATHLLAGGGDLRTIQELLGHASLSTTQVYT-GVDASRL 288 >gi|315221512|ref|ZP_07863432.1| site-specific recombinase, phage integrase family [Streptococcus anginosus F0211] gi|315189346|gb|EFU23041.1| site-specific recombinase, phage integrase family [Streptococcus anginosus F0211] Length = 382 Score = 99.7 bits (247), Expect = 6e-19, Method: Composition-based stats. Identities = 45/313 (14%), Positives = 104/313 (33%), Gaps = 40/313 (12%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130 + L + +S + + I G+ KIT I+ + Sbjct: 70 FQELADIWLESYKLTVKPQTYEATLSNLRTHIYPVFGNRQLDKITASDIQVFINQLSRYF 129 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI----RPWTKEDMQQFKSFW 186 + + + +R +F+ + + V NP + P+R+ + + +D++ F Sbjct: 130 ENFVTIRSIIRRIFQQGILLQLVTNNPARDIILPRRQKKADDNKVKFIAPDDLKAFLDNL 189 Query: 187 SEGSQPR-------LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT---------- 229 + R + + LL +GLR + C + + +I KT Sbjct: 190 EKKQYKRYGLYYEYVLYHLLLSTGLRIGEVCALEWTDIDLDKSTITVNKTYNKGLKAVST 249 Query: 230 ----GTIITVELPDGFMKLLAMTP-IGKETFFINNDKQKM------NATQFSIWFKA--- 275 T+ + + +L + ++ FF + F + + Sbjct: 250 AKTKSANRTISIDKKTVNMLRLYKNRQRQLFFETGARAPSVVFATPTREYFDLAIRQSAL 309 Query: 276 --KATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK-GADRIR 330 + +AG+ + + H R A++ +AG + EL G + + Y+ D+ + Sbjct: 310 DTRCKEAGIPRFTFHAFRHTHASLLLNAGISYKELQYRLGHANITMTLDIYSHLSRDKEK 369 Query: 331 LGIKNSRRISSVV 343 + + S + Sbjct: 370 EAVAYFEKAISSL 382 >gi|291482891|dbj|BAI83966.1| hypothetical protein BSNT_00830 [Bacillus subtilis subsp. natto BEST195] Length = 368 Score = 99.7 bits (247), Expect = 6e-19, Method: Composition-based stats. Identities = 57/329 (17%), Positives = 98/329 (29%), Gaps = 36/329 (10%) Query: 25 FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHW 84 F G RIR + + A + E R + LIS Y + Sbjct: 19 FDPITGERIRTRPVASTRKEALELEAKLRREFQEERARKSRSV--SFPTLISIYLANCEI 76 Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTK---HIRSGVESRKHTPSSAIQFLTSMR 141 S + I D +KIT + R + + S +TS+ Sbjct: 77 DSKPNYYQNQKYIINKHISDYFLKSDIQKITHREITDFRKHLMETGLSNKSVNNIMTSLS 136 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP-RLAFEFLL 200 +F AV +E + NPC +V+R + ++ W E+ ++F S + + + Sbjct: 137 KIFDTAVHEEILKRNPCDNVKRLPLTRKKMKFWRPEEFKKFISLIPQDQLLFKTFYTVAF 196 Query: 201 YSGLRCSDSCRAGVQHLQ---------------NNIFSIKTQKTGTII-TVELPDGFMKL 244 +GLRC + + + + F + T KT I V + +KL Sbjct: 197 LTGLRCGEMLALQWKDIDKILLEIDVHKSCTWLDGQFVVTTPKTKNSIRRVSINKKLLKL 256 Query: 245 LAMTP-------------IGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVR 290 L +T+ FS K + + H R Sbjct: 257 LESWKEAQEELFNELGIRHSHDTYIFQYKDTPSRKDIFSRKIKYFCKDSDLTPIRLHDFR 316 Query: 291 KFSATISADAGATAHELMATYGWKTVDQA 319 + G + G +V Sbjct: 317 HSHVALLIHQGEDYITIKERLGHGSVKTT 345 >gi|125973032|ref|YP_001036942.1| phage integrase [Clostridium thermocellum ATCC 27405] gi|125713257|gb|ABN51749.1| phage integrase [Clostridium thermocellum ATCC 27405] Length = 506 Score = 99.7 bits (247), Expect = 6e-19, Method: Composition-based stats. Identities = 40/243 (16%), Positives = 76/243 (31%), Gaps = 44/243 (18%) Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 S+ +P+S ++ ++R + A + NP +ERPK++ +T E++ + Sbjct: 236 SKGLSPNSVLRRHANIRKALQHAFHLGLIKSNPADRIERPKKQDYTASYYTDEELAKLFK 295 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--------------------NNIFSI 224 G L Y GLR S+ + + ++ Sbjct: 296 AAK-GDPLELPIVLAAYYGLRRSEIIGLRWDAIDFNPDDPKITIQFTVTEVNFGDGQGNV 354 Query: 225 KTQKTG-----TIITVELPDGFMKLLAMTPIG----------------KETFFINNDKQK 263 +K G + T+ L LL + +N ++ Sbjct: 355 IIEKEGTKSKASKRTLPLVKPIADLLLQKKKDIENNRRLCGSCYNDKYLDFVHVNEIGER 414 Query: 264 MNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-T 321 M S F K G+ K H +R A++ G + ++ G + Sbjct: 415 MKPNYISQHFALLLEKHGLKKIRFHDLRHSCASLLYANGVSLKQIQEWLGHSDISTTANI 474 Query: 322 YTK 324 YT Sbjct: 475 YTH 477 >gi|258654185|ref|YP_003203341.1| tyrosine recombinase XerD [Nakamurella multipartita DSM 44233] gi|258557410|gb|ACV80352.1| tyrosine recombinase XerD [Nakamurella multipartita DSM 44233] Length = 353 Score = 99.7 bits (247), Expect = 6e-19, Method: Composition-based stats. Identities = 46/330 (13%), Positives = 91/330 (27%), Gaps = 62/330 (18%) Query: 56 PKREYINSPRKKPTTLKWLISEYRKS-AHWGSLAVNSRISFESYFDQ---IIRKSGDFDY 111 P RE + SP + L + Y +A N+ +S+ ++ + +G Sbjct: 5 PAREAVASPVEPSPELVAALRGYLDHLVVERGVARNTVLSYRRDLNRYLQFLAAAGRTRV 64 Query: 112 RKITTKHIRSGVESRKHTP--------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER 163 +T + + + SSA + + + R ++ + + +P V Sbjct: 65 ADVTAADVSDFLVCLRTGADGRPPLAASSAARAVVAARGWHRFLLNEGTAEADPSRDVHP 124 Query: 164 PKRKTEGIRPWTKEDMQQFKSFW-------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQH 216 P + E + + G + R E L +G R S+ V Sbjct: 125 PTPARRLPKALPVEAIGRLLDAAGSADPDGPRGLRDRALLELLYATGARISEVVGLDVDD 184 Query: 217 LQNNIFSIKTQ-------------------------KTGTIITVEL-------------- 237 + + + K V + Sbjct: 185 IDLGPGRLAGRSSTDPTDPTDPQVAPPITSVVRLHGKGAKERLVPVGSFALRALEAYLVR 244 Query: 238 -PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKFS 293 + F+N +++ A +AG+ S H +R Sbjct: 245 GRPVLAAAGRGAGPARGALFLNIRGGRLSRQSAWQVLADAARRAGLPASGVSPHTLRHSF 304 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYT 323 AT + GA + G +V + YT Sbjct: 305 ATHLLEGGADVRSVQELLGHASVTTTQIYT 334 >gi|84625422|ref|YP_452794.1| site-specific tyrosine recombinase XerC [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|84369362|dbj|BAE70520.1| site-specific recombinase [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 305 Score = 99.7 bits (247), Expect = 6e-19, Method: Composition-based stats. Identities = 39/267 (14%), Positives = 90/267 (33%), Gaps = 27/267 (10%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDF-------------DYRKITTKHIRSGV---ESRKH 128 ++ ++ ++ ++ +G+ D ++ + H+R V R Sbjct: 15 RQVSAHTLDAYRRDLAALVAWTGERNAEDGAQQTATPVDSAQLDSAHLRQFVAAEHRRGL 74 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF--- 185 +P S + L++ R + W ++ +A +P ++ PK + + + ++ + Sbjct: 75 SPKSLQRRLSACRSYYAWLLKHGRIAASPAAALRAPKAQRKLPQVLDADEAVRLVEVPTD 134 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKL 244 G + R E SGLR S+ C + L ++ + K V + + Sbjct: 135 APLGLRDRALLELFYSSGLRLSELCALRWRDLDLDSGLVMVLGKGSKQRLVPVGSHAIAA 194 Query: 245 LAM-----TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATIS 297 L F ++ I K A + G+ + H +R A+ Sbjct: 195 LRQWRRDSGASADAHVFPGRAGGAISQRAVQIRIKQLAVRQGMFKDVHPHMLRHSFASHI 254 Query: 298 ADAGATAHELMATYGWKTVDQAETYTK 324 ++ + G + + YT Sbjct: 255 LESSGDLRGVQELLGHSDIATTQIYTH 281 >gi|224371854|ref|YP_002606020.1| Phage integrase family protein [Desulfobacterium autotrophicum HRM2] gi|223694573|gb|ACN17856.1| Phage integrase family protein [Desulfobacterium autotrophicum HRM2] Length = 360 Score = 99.7 bits (247), Expect = 6e-19, Method: Composition-based stats. Identities = 60/345 (17%), Positives = 117/345 (33%), Gaps = 34/345 (9%) Query: 16 TRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75 R + + F G+R + P +T A KK T + Sbjct: 6 KRRDRYVLDFYDLEGKRKWITMPKGTTLKAAKEELRKVEDDLATGNYISPKKTPTFDQVA 65 Query: 76 SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP---SS 132 E+ ++ ++ +E + + + +IT + + + R+ S+ Sbjct: 66 QEWLDHKK-MNIRASTWAVYEGHTKNHFPEFKNLKIHQITIQRVEKFITDRQAAGMNLST 124 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG------IRPWTKEDMQQFKSFW 186 + L S+R +F AV++ Y NP + PK + E I+ T + + F Sbjct: 125 LRKILVSLRQIFNLAVKRGYCPRNPLDYADMPKSQGEETDGADKIQILTHDQITAFLEVV 184 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIK----------TQKTGTIIT 234 +E + + F ++SG R + + ++ I+ T+ G+ Sbjct: 185 TE-QKYHVLFSLAIFSGARQGELLGLKWSDILWGDSQIHIQRSFNNQRFYDTKTKGSNRK 243 Query: 235 VELPDGFMK-----LLAMTPIGKETFFINNDKQKMNATQFSIW-FKAKATKAGVNK-SAH 287 +++ +K LA P G + F MN F A + + H Sbjct: 244 IDIGPVMLKKLKKWRLACPPGGLDLVFPTAKGNPMNHNNMVNRYFLPGLKAAKLERIRFH 303 Query: 288 GVRKFSATISADAGATAHELMATYGWK----TVDQAETYTKGADR 328 +R A++ D G + A G T++ KG +R Sbjct: 304 DMRHTYASLLIDQGENIKYIQAQLGHSNPTVTLNVYAHLMKGTNR 348 >gi|317133822|ref|YP_004089733.1| integrase family protein [Ruminococcus albus 7] gi|315450284|gb|ADU23847.1| integrase family protein [Ruminococcus albus 7] Length = 326 Score = 99.7 bits (247), Expect = 6e-19, Method: Composition-based stats. Identities = 33/223 (14%), Positives = 83/223 (37%), Gaps = 17/223 (7%) Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177 + + R++ S+ + TS++ + + A + + + + +S+E P K + + + Sbjct: 83 MVWLKDERQNGASARARKTTSLKQFYDYLANKAQLIPKDNMVSLEVPHVKRALPKYLSLD 142 Query: 178 DMQQFKS--FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235 ++Q+ S + L G+R S+ C + + +++ G + Sbjct: 143 EVQKLLSSIRTKNTERDYCIITLFLNCGMRLSELCGININDISFENKTLRLMGKGKKERI 202 Query: 236 -----ELPDGFMKLL-----AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-- 283 D K L ++ F+++ K +++ + + AG+ Sbjct: 203 ITLNNNCLDAIEKYLPYRKNYEMAQNEKALFLSSRKNRLSRRRVQKIIEECIMDAGLKNT 262 Query: 284 -KSAHGVRKFSATISADA-GATAHELMATYGWKTVDQAETYTK 324 + H +R +AT+ + G + G ++ E YT Sbjct: 263 GVTTHKLRHTAATLMYNNNGGDILAVKEILGHESTATTEIYTH 305 >gi|15834875|ref|NP_296634.1| site-specific tyrosine recombinase XerD [Chlamydia muridarum Nigg] gi|34223084|sp|Q9PL53|XERD_CHLMU RecName: Full=Tyrosine recombinase xerD gi|7190294|gb|AAF39124.1| integrase/recombinase XerD [Chlamydia muridarum Nigg] Length = 301 Score = 99.7 bits (247), Expect = 6e-19, Method: Composition-based stats. Identities = 30/224 (13%), Positives = 70/224 (31%), Gaps = 23/224 (10%) Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 K + ++ + L +++V F + + + P +E PK + E++ Sbjct: 65 HQAKESETTLARRLIALKVFFHFLKDAKLIHQQPF--IEHPKVWKRLPSILSTEEVNSLL 122 Query: 184 SF--------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235 + ++ +G+R S+ C + + ++ + + T + V Sbjct: 123 NQPLNTLNLDAYIANRDTAILYTFYATGIRVSELCDLCIGDISDDFIRVTGKGRKTRL-V 181 Query: 236 ELPDGFMKLLAMTPI-----------GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284 + + + +E F++ +K+ + A Sbjct: 182 PISIKARQTIDSYLTMFRERFQKKNPSEEHVFLSIRGKKLERSCVWKRITFYAKLVTTKH 241 Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 S H +R AT + A + G + E YT A Sbjct: 242 ISPHSLRHAFATHLLNNQADLRIIQEMLGHARISSTEIYTHVAS 285 >gi|318604128|emb|CBY25626.1| putative bacteriophage integrase [Yersinia enterocolitica subsp. palearctica Y11] Length = 351 Score = 99.7 bits (247), Expect = 6e-19, Method: Composition-based stats. Identities = 50/314 (15%), Positives = 107/314 (34%), Gaps = 31/314 (9%) Query: 28 GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSL 87 GRRIR + + + AY + ++ ++ ++ T+ L+ + + AH +L Sbjct: 20 RDGRRIRKQFSTKGEAL-AYERHVKDEAEQKPWLG-DKQDKRTVSDLVDTWHR-AHGVTL 76 Query: 88 AVNSRI------SFESYFDQIIRKSGDFDYRKITTKHIRSGVES----RKHTPSSAIQFL 137 R ++ES + + + + K + ++ +K +P + L Sbjct: 77 EDGDRRKDAMTYAYESMGKPLATEFNAKLFSQYREKRLSGELQRNTRVKKVSPRTVNLEL 136 Query: 138 TSMRVLFKWAVR-QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW--SEGSQPRL 194 R +F +R E+ A +P +V + + E++ S S Sbjct: 137 AYFRAMFNELIRLDEWKAEHPLKNVRPYRTDESEMAFLRLEEIDTLLKECANSSASDLLT 196 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET 254 + L +G R S++ + + + + K T+ + + +K + G+ Sbjct: 197 VVKICLATGARWSEAESLSLSQITKDRITFIKTKGKKNRTIPVSEELIKSIPKKESGEPL 256 Query: 255 FFINNDKQKMNATQFSIWFKAKATKAGVNKSA----HGVRKFSATISADAGATAHELMAT 310 F F+ +A +N A H +R A+ AG L Sbjct: 257 FV-----------SCYSAFRTALKRAKINLPAGQLSHVLRHTFASHFMMAGGNILVLQRI 305 Query: 311 YGWKTVDQAETYTK 324 G + Y+ Sbjct: 306 LGHTDIKMTMRYSH 319 >gi|315924314|ref|ZP_07920537.1| tyrosine recombinase XerC [Pseudoramibacter alactolyticus ATCC 23263] gi|315622385|gb|EFV02343.1| tyrosine recombinase XerC [Pseudoramibacter alactolyticus ATCC 23263] Length = 355 Score = 99.7 bits (247), Expect = 6e-19, Method: Composition-based stats. Identities = 50/303 (16%), Positives = 97/303 (32%), Gaps = 53/303 (17%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG--------DFDYRKITT---------- 116 +++Y SA ++N+ S+++ Q R D + I Sbjct: 38 LADYLISA--KGYSLNTIRSYQNDLIQFFRFLRRRFGQVDRDCPFEAIDISPIDFSLLSA 95 Query: 117 ---KHIRSGVESRKHTPSSAIQFLT----SMRVLFKWA-VRQEYVAINPCLSVERPKRKT 168 I + + + ++R L+ + V + +P ++E PK K Sbjct: 96 VQLADIYAFLGYASVQRGNGNTTRKRKTAAIRALYHYLTVVLQLDMSDPTQNLEVPKIKQ 155 Query: 169 EGIRPWTKEDMQQFKSFWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226 T ++ + ++ R L G+R S+ ++ +Q+ I Sbjct: 156 RDPIYLTLDEAMSLLNAIDGRNKERDLAIVTLFLNCGMRLSELTNLRLKDIQDETLHI-V 214 Query: 227 QKTGTIITVELPDGFMKLLAMT-PIGK-----------------ETFFINNDKQKMNATQ 268 K V L D + L PI K + F+++ + ++ Sbjct: 215 GKGNKERDVILNDACVNALEAYYPIRKQQIERIEAQSDKVVKVDDHLFLSSRGRGISNRM 274 Query: 269 FSIWFKAKATKAGVNK---SAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTK 324 KAG++ + H +R +AT+ G L G + V E YT Sbjct: 275 VEGMVHKYILKAGLDANKITVHKLRHTAATLMYKYGQVDIRTLQKVLGHENVSTTEIYTH 334 Query: 325 GAD 327 D Sbjct: 335 IED 337 >gi|228911396|ref|ZP_04075196.1| Prophage LambdaBa04, site-specific recombinase, phage integrase [Bacillus thuringiensis IBL 200] gi|228848231|gb|EEM93085.1| Prophage LambdaBa04, site-specific recombinase, phage integrase [Bacillus thuringiensis IBL 200] Length = 356 Score = 99.7 bits (247), Expect = 6e-19, Method: Composition-based stats. Identities = 52/314 (16%), Positives = 98/314 (31%), Gaps = 56/314 (17%) Query: 84 WGSLAVNSRI-----SFESYFD----QIIRKSGDFDYRKITTKHIRSGVESRKHTP---S 131 W L + S+E I+ G + I I+S K Sbjct: 47 WEKLKPIRKAELKITSYEKDISLVKLYILPTFGYKKIKSIKPVIIQSYYAELKEKGLSNG 106 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191 + R +FK AV E + N V++P+ + ++ W+ E+ +F + E ++ Sbjct: 107 TISNIHRCFRCIFKHAVEWEILHDNIMNKVKKPREEQVEMKTWSSEECNRFLHYLKEKNK 166 Query: 192 PRLAFEFL-LYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTP- 249 F L +Y+G+R + + + + I K+ V+ +G K T Sbjct: 167 KYYMFFLLAIYTGMRRGELLALTWKDIDFDNQRILVNKS----LVKTEEGLFKAATKTKS 222 Query: 250 ------IGKETFFINNDKQKMNATQFSIW----------------------------FKA 275 I +F W K Sbjct: 223 SNRSISISSFVVIELQTYYLYKKKEFFRWGISLNEEAYIFAGNTIHSPLHIDAPHRFLKD 282 Query: 276 KATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGI 333 KAGV + H +R AT+ AG + G ++ + Y+ + Sbjct: 283 HYKKAGVPRIRIHDLRHTHATLMLQAGEHPKIVQDRLGHSSIQMTLDKYSHITQ--NMQQ 340 Query: 334 KNSRRISSVVDSDD 347 + + S++ S++ Sbjct: 341 QAAENFESIIKSNE 354 >gi|222152421|ref|YP_002561596.1| phage integrase [Streptococcus uberis 0140J] gi|222113232|emb|CAR40731.1| putative phage integrase [Streptococcus uberis 0140J] Length = 381 Score = 99.7 bits (247), Expect = 6e-19, Method: Composition-based stats. Identities = 46/322 (14%), Positives = 115/322 (35%), Gaps = 43/322 (13%) Query: 63 SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRS 121 S + + T K L + + +L S S S + I+ G KIT+ +++ Sbjct: 62 SKKVQVKTFKDLTDMWLVNYK-LTLKPQSYNSTVSMLNKHILPYFGKMKLDKITSSDVQT 120 Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV---ERPKRKTEGIRPWTKED 178 + S + + + + + + V + + NP + + K+ ++ ++ K+D Sbjct: 121 FINSLSKKTINYVNARSIISRILQHGVLLQLIQHNPARDIVLPRKQKKDSDKVKFIEKDD 180 Query: 179 MQQFKSFWSEGSQ-------PRLAFEFLLYSGLRCSDSCRAGVQHLQ------------- 218 +++F + + + ++ LL +GLR ++C + Sbjct: 181 LKKFLDYIEKYKLRNYKTNFNYVLYKLLLATGLRIGEACALEWSDIDLINGTINIDKTYS 240 Query: 219 --NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQK-------MNATQF 269 S K+GT + + + + +L + + + F + F Sbjct: 241 KSIRRLSTTKSKSGTRL-ISIDQATVNMLKLYQVRQRQLFHEVGGKAPKVVFATPTRKYF 299 Query: 270 SIWFK-----AKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETY 322 + + +AG+ + + H R A++ +AG + EL G + + Y Sbjct: 300 HTFVRQNALDRACIEAGIPRFTFHAFRHTHASLLLNAGISYKELQYRLGHSNIAMTLDVY 359 Query: 323 TK-GADRIRLGIKNSRRISSVV 343 + D+ + + + + + Sbjct: 360 SHLSKDKEKEAVSYFEKAINSI 381 >gi|167618213|ref|ZP_02386844.1| phage integrase family protein [Burkholderia thailandensis Bt4] Length = 448 Score = 99.7 bits (247), Expect = 6e-19, Method: Composition-based stats. Identities = 69/367 (18%), Positives = 124/367 (33%), Gaps = 28/367 (7%) Query: 9 PFVTKERTRHGKII----YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP 64 P + T HG+ + Y G R+ ++ E T A A R+ + Sbjct: 29 PGFLCKVTAHGRKVFMLQYRTNWGERRKPKIGQFGELTVEQARSIAQDWLADVRKGNDPS 88 Query: 65 RKKPT-----TLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKH 118 K T+K L +++ + ++ +++ D+ I+ G +T +H Sbjct: 89 AAKLAARMSPTVKELCTQFMEEYSRPRNKPSTVDTYQDQIDRFIVPMLGKLKVPDVTRQH 148 Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAI--NPCLSVERPKRKTEGIRPWTK 176 I + + P +A + L+ +R +F A Y NPC V + E R Sbjct: 149 ITTLMRDLAKIPVTANRVLSCIRKMFNMAEVWGYRPDGSNPCRHVPKYPENGE-TRYIVN 207 Query: 177 EDMQQFKSFWS-------EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQ 227 +++ + ++ E LA R S+ + N Sbjct: 208 DELARLYTYLDRADAEGLEHPTLTLAVRLQFEFSARMSEIRLLEWSWIDFENRRIVWPDS 267 Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFF---INNDKQKMNATQFSIWFKAKATKAGV-N 283 KTG I + L I + I + + + + +K +A V + Sbjct: 268 KTGDISKPMSEVAYQLLSNACRIDDSPYVCPAIFDSSIPLPESTYYNGWKRILKRANVVH 327 Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR-IRLGIKNSRRISS- 341 HG+R +AT A++G MA KTV Y D IR + + Sbjct: 328 VGTHGIRHRAATDIANSGIPVKVGMALTAHKTVSMFMRYVHAEDDPIRAAAEKVANLRRD 387 Query: 342 VVDSDDP 348 +D+ P Sbjct: 388 TIDNRAP 394 >gi|296446473|ref|ZP_06888416.1| integrase family protein [Methylosinus trichosporium OB3b] gi|296255969|gb|EFH03053.1| integrase family protein [Methylosinus trichosporium OB3b] Length = 446 Score = 99.7 bits (247), Expect = 6e-19, Method: Composition-based stats. Identities = 50/302 (16%), Positives = 94/302 (31%), Gaps = 41/302 (13%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRI---------SFESYFDQIIRKSGDFDYRKITTKHIR 120 T+ L Y A G + R I G + I Sbjct: 107 TVAELCDWYLADAETGRILGRRRRPIKASTLAMDRSRIDSHIKPLLGRRQVGALKLGDIE 166 Query: 121 SGVESRKHTPSS-----------------AIQFLTSMRVLFKWAVRQEYVAINPCLSVER 163 + ++ A + L+++ +F+ AVR + NP V R Sbjct: 167 AAQADIAAGKTAKARKGSRGGATTGGEGVAARTLSTLHAIFEHAVRVGKIPSNPAKGVRR 226 Query: 164 PKRKTEGIRPWTKEDMQQF----KSFWSEGSQP--RLAFEFLLYSGLRCSDSCRA--GVQ 215 R ++ ++++ ++ +G P A FLL +G R + G Sbjct: 227 LASAPRERR-LSRAEIERLGKTLRAAAEDGEHPTALAAIRFLLMTGFRRMEGLGVERGWL 285 Query: 216 HLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINND---KQKMNATQFSIW 272 + K+G V + + LL P K FF D + + Sbjct: 286 DEEEGAIRFPDTKSGAQTRV-IGQAAIDLLLARPEAKSPFFFPADWGEGHFIGVVRVLDR 344 Query: 273 FKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 +A A + + H +R A+++ D G + + A G + + Y + +R+ Sbjct: 345 ICERARLADI--TPHTLRHTFASLAGDLGFSELTIAALLGHASRGVTQRYIHIDEALRMA 402 Query: 333 IK 334 Sbjct: 403 AD 404 >gi|258616485|ref|ZP_05714255.1| phage integrase family site specific recombinase [Enterococcus faecium DO] Length = 225 Score = 99.7 bits (247), Expect = 6e-19, Method: Composition-based stats. Identities = 34/209 (16%), Positives = 71/209 (33%), Gaps = 23/209 (11%) Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW----SEGSQP 192 + S+R +++ +++E + NP V K+ R + + +MQ + Sbjct: 2 IASLRSFYQYLLKEEVIKENPFSYVHLKKKNLRLPRFFYENEMQALFDSVAGDSPLDLRN 61 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVEL------------PD 239 R E L SG+R S+ V + ++ + K L + Sbjct: 62 RALLEVLYGSGIRLSECSSLSVSDIDFDSEVMLIHGKGNKERYAPLGSFAQDALQEYFRE 121 Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQ----FSIWFKAKATKAGVNKSAHGVRKFSAT 295 G L+ + F+N+ + + T + K + + ++ H +R AT Sbjct: 122 GRQVLMTKYHEEHDIVFVNHHGKPITPTGIEYVLNQMIKKSSLDSDIH--PHMLRHTFAT 179 Query: 296 ISADAGATAHELMATYGWKTVDQAETYTK 324 + GA + G + + Y Sbjct: 180 HLLNNGADLRTVQELLGHANLSTTQIYAH 208 >gi|320450285|ref|YP_004202381.1| integrase/recombinase [Thermus scotoductus SA-01] gi|320150454|gb|ADW21832.1| integrase/recombinase [Thermus scotoductus SA-01] Length = 304 Score = 99.7 bits (247), Expect = 6e-19, Method: Composition-based stats. Identities = 44/239 (18%), Positives = 89/239 (37%), Gaps = 18/239 (7%) Query: 116 TKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVR-QEYVAINPCLSVERPKRKTEGIRPW 174 + +R+ + + P FL ++R +++ + + +P + RPK Sbjct: 63 PEAVRALLLKERWAPRRVQGFLAALRSYYRYLSQVKGEAVSDPTEGIGRPKAGRRLPLHP 122 Query: 175 TKEDMQQFKSFWSEGSQPRLAFEF---LLYSGLRCSDSCRAGVQHLQNNI---FSIKTQK 228 E++++F + RL L +GLR S++ +++ +I+ Sbjct: 123 APEELRRFLEALEAEKEARLLSRLARFLYGTGLRISEALSLKGRNVILEGSVPVAIRVVG 182 Query: 229 TG-TIITVELPDGFMKLLAMT--PIGKETFFINNDKQKM----NATQFSIWFKAKATKAG 281 G V L ++L P G + F + +A F+ A +AG Sbjct: 183 KGNKERLVPLSRTAREVLLELGPPQGNVSIFTFTHGRHRGSVPSARYVEARFREAALRAG 242 Query: 282 VN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 ++ + H +R AT+ + G + G +++ + Y A R RL SR Sbjct: 243 LDPRRFTPHKLRHAYATLLVENGVELDAVKDLLGHESIATTQIYLH-ASRERLREAASR 300 >gi|225023696|ref|ZP_03712888.1| hypothetical protein EIKCOROL_00560 [Eikenella corrodens ATCC 23834] gi|224943578|gb|EEG24787.1| hypothetical protein EIKCOROL_00560 [Eikenella corrodens ATCC 23834] Length = 285 Score = 99.7 bits (247), Expect = 6e-19, Method: Composition-based stats. Identities = 42/241 (17%), Positives = 89/241 (36%), Gaps = 15/241 (6%) Query: 111 YRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAV-RQEYVAINPCLSVERPKRKTE 169 +T I V + + S+ ++ +R + V +++ P ++ K + Sbjct: 28 LSDLTRDFIHQVVNQKNCSSSTKNRYFALIRAILNKCVNEWDWLDKAP--KLKLHKEPKK 85 Query: 170 GIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIK 225 IR E+ Q+ + + F L +GLR ++ + + Sbjct: 86 RIRWLYPEEAQRLVNALDSLPYMQHLVIFSLATGLRQANVLNLKWEQIDLRRQVAWIYPD 145 Query: 226 TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NK 284 K G I V L M++L P + F ++ ++ + +W + KAG+ + Sbjct: 146 QAKAGKAIGVPLNHTAMQVLMDRPRVSDYVFTHSKGARVKSISSRVW-REALEKAGITDF 204 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344 H +R A+ G L GW++V+ + Y L ++ + + ++D Sbjct: 205 RWHDLRHTWASWLVQQGTPLAALKEMGGWESVEMVQRYAH------LAPEHLSQHARLID 258 Query: 345 S 345 S Sbjct: 259 S 259 >gi|222149986|ref|YP_002550943.1| site-specific tyrosine recombinase XerD [Agrobacterium vitis S4] gi|221736968|gb|ACM37931.1| tyrosine recombinase XerD [Agrobacterium vitis S4] Length = 332 Score = 99.7 bits (247), Expect = 6e-19, Method: Composition-based stats. Identities = 50/324 (15%), Positives = 104/324 (32%), Gaps = 51/324 (15%) Query: 75 ISEYRKS-AHWGSLAVNSRISFESYFDQII-----RKSGDFDYRKITTKHIRSGVESRKH 128 I + + + A N+ S+E + + RK + + R Sbjct: 9 IEAFLEMMSAERGAAGNTLSSYERDLEDLHGFLATRKVSVMAATSDDLSAYLADLGHRGF 68 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 SS + L+++R +K+ + +P ++ PK+ + + D+ + S Sbjct: 69 EASSQARRLSALRQFYKFLYAEGLRGDDPTSILDTPKKGRPLPKTLSIADVDKLLSLAQA 128 Query: 189 GS-----------QPRLAFEFLLYSGLRCSDSCRAGVQHL-QNNIFSIKTQKTGTIITVE 236 + + E L +G+R S+ L Q F + K V Sbjct: 129 EAALDGPDRLQRLRRLALLELLYATGMRVSELVSLPANVLAQEGRFLVIRGKGNKERLVP 188 Query: 237 LPDGFMKLL-----------AMTPIGKET-----------------FFINNDKQKM-NAT 267 L + + A P K+T F ++ Sbjct: 189 LSRSAIAAMQVYAQAKEIEQAEKPPSKKTASKQTESKLGKSSGIGFLFPAASREGYLPRQ 248 Query: 268 QFSIWFKAKATKAGVNK---SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 F+ K A +AG++ S H +R A+ + GA + G + + YT Sbjct: 249 VFARELKDLAIRAGLSGDAVSPHVLRHAFASHLLENGADLRVVQELLGHSDISTTQIYTH 308 Query: 325 G-ADRIRLGIKNSRRISSVVDSDD 347 +R+++ ++ ++ + D Sbjct: 309 VLEERLQILVETHHPLAKHRKNHD 332 >gi|119384024|ref|YP_915080.1| phage integrase family protein [Paracoccus denitrificans PD1222] gi|119373791|gb|ABL69384.1| phage integrase family protein [Paracoccus denitrificans PD1222] Length = 323 Score = 99.7 bits (247), Expect = 6e-19, Method: Composition-based stats. Identities = 41/273 (15%), Positives = 93/273 (34%), Gaps = 35/273 (12%) Query: 90 NSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGV---ESRKHTPSSAIQFLTSMRVLF 144 N+ +++ + D + + + + +++ + ++ + L+++R L Sbjct: 28 NTLLAYGRDLRDFVDWLAARDETLLTVPREGVEDYLSHCDAQGLSRATRARRLSAIRQLT 87 Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS-------EGSQPRLAFE 197 ++A+ + + +P + P R + + ++Q E ++ + E Sbjct: 88 RFALDEGWREDDPAGRISGPGRAQRLPKVLDRAEVQAMLDALPRIGRNETERARNLVLVE 147 Query: 198 FLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFMKLLAM--------- 247 + +G+R S+ V + + + K G V L D + LA Sbjct: 148 LVYATGMRVSELVSLPVGACRGDPALLLIRGKGGKERMVPLSDPARRALAAWLKRRDDAP 207 Query: 248 -------TPIGKETFFIN---NDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSA 294 GK ++ + + M + A AG++ S H +R A Sbjct: 208 AESPLGRLVAGKGARWLFPAPSREGHMTRQAMNALLGQLALAAGIDPARVSPHVIRHAFA 267 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGAD 327 T + GA + G + E YT D Sbjct: 268 THLLEGGADLRAIQTLLGHADLGTTEIYTHVMD 300 >gi|313677913|gb|ADR74174.1| putative integrase [uncultured bacterium 52B7] Length = 404 Score = 99.7 bits (247), Expect = 6e-19, Method: Composition-based stats. Identities = 50/293 (17%), Positives = 103/293 (35%), Gaps = 20/293 (6%) Query: 47 YMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSA-HWGSLAVNSRISFESYFDQIIRK 105 Y G + KK +T+ + KSA +++ + S + Sbjct: 82 YWK--RGIPATLSLLKDAVKKKSTVNVSFFTFAKSAIDNSDKKQSTKDNLHSTLAVLNDF 139 Query: 106 SGDFDYRKIT---TKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAIN--PCLS 160 D++ +T + + + + ++ + + +R L A+ Q Y+ + P Sbjct: 140 RSGLDFKDLTYTSLRDFEQYLREKGNAVNTIAKHMRQLRTLVNEAINQGYMHADAYPFRK 199 Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR---LAFEFLLYSGLRCSDSCRAGVQHL 217 + K++ T +++++ ++ E R AF F Y+GLR SD C+ ++ Sbjct: 200 YK-IKQEKGRHEFLTPDELKKLETVEVEEESMRHVLDAFLFCCYTGLRYSDFCQLTPENF 258 Query: 218 QN----NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWF 273 K+ KTG I + L + I I + ++ + Sbjct: 259 IRVNGKRWLYFKSVKTGVEIRLPLH--LLFESRALGILDRYPDIGSFAALPCNSEVNKQL 316 Query: 274 KAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 + A G+ K H R AT+ G + G +V + Y++ Sbjct: 317 RKLAGLCGIKKRITYHVSRHTCATLLVHQGVAITTVQKLLGHTSVKTTQIYSE 369 >gi|167756396|ref|ZP_02428523.1| hypothetical protein CLORAM_01929 [Clostridium ramosum DSM 1402] gi|167703804|gb|EDS18383.1| hypothetical protein CLORAM_01929 [Clostridium ramosum DSM 1402] Length = 286 Score = 99.7 bits (247), Expect = 6e-19, Method: Composition-based stats. Identities = 38/268 (14%), Positives = 90/268 (33%), Gaps = 23/268 (8%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133 LI Y+ ++ + + ++ + + + K K + + + P+S Sbjct: 10 LIVNYKNHLIDEEKSLATITKYIRDIEKFYQYADKKEVTKELVKLYKEELMK-SYKPTSI 68 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI----RPWTKEDMQQFKSFWSEG 189 L ++ F++ ++ ++ K + + +K++ ++ + + Sbjct: 69 NSMLAALNQFFEY---NGWLE----CKIKELKIQKRVFLEESKELSKDEYKRLVNAARKQ 121 Query: 190 SQPRLAFEF--LLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL-- 245 RL + +G+R S+ VQ L++ I G + + D ++L Sbjct: 122 KNERLYVLLQAICSTGIRVSEHRYITVQALKDGYAQI--YNKGKVREIFFSDDLKRILLK 179 Query: 246 --AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISADA 300 I F+ + ++ + K A V +S H +R A + Sbjct: 180 YCHKNKIENGAIFVTRSGRPLDRSNIWKAMKDLCDDAKVERSKVYPHNLRHLFAVTYYNL 239 Query: 301 GATAHELMATYGWKTVDQAETYTKGADR 328 L G ++D YT + R Sbjct: 240 KKDIARLADLLGHSSMDTTRIYTMSSGR 267 >gi|161617508|ref|YP_001591473.1| hypothetical protein SPAB_05367 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|161366872|gb|ABX70640.1| hypothetical protein SPAB_05367 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] Length = 360 Score = 99.7 bits (247), Expect = 6e-19, Method: Composition-based stats. Identities = 36/240 (15%), Positives = 81/240 (33%), Gaps = 17/240 (7%) Query: 95 FESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKHTPSSAIQFLTSMRVLFKWA-VRQE 151 + + + + D + + + R ++P+S L + L+ A + Sbjct: 29 RSALARRYMHEITSVDIAEYRDQRLSEVSGKTGRTNSPASVRLELALLSALYNLARIEWG 88 Query: 152 YVAINPCLSVERPKRKTEGIRPWTKEDMQQF-KSFWSEGSQPRLAFEFLLYSGLRCSDSC 210 NP V +P R T ++ ++ ++ + F L + +R + Sbjct: 89 TCTHNPVEHVRKPPASKGRTRRLTSQEERKIGRALAKRNIELAAIFHLALETAMRQGEIL 148 Query: 211 RAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLA--MTPIGKETFFINNDKQKMNA 266 +++ I + K G++ V L K+L P+ F + Sbjct: 149 SLRWENIDLHIGIAHLPLTKNGSVRDVPLSFKARKVLREYSGPLSGPVF-------SYTS 201 Query: 267 TQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTK 324 F ++ G+ + H +R + + + G E+ A G K++ + YT Sbjct: 202 NGFKSAWREVIQALGIVDLHFHDLRHEAISRLFELGTLNVMEIAAISGHKSLTMLKRYTH 261 >gi|77163532|ref|YP_342058.1| Phage integrase [Nitrosococcus oceani ATCC 19707] gi|254436437|ref|ZP_05049942.1| site-specific recombinase, phage integrase family protein [Nitrosococcus oceani AFC27] gi|76881846|gb|ABA56528.1| Phage integrase [Nitrosococcus oceani ATCC 19707] gi|207087971|gb|EDZ65245.1| site-specific recombinase, phage integrase family protein [Nitrosococcus oceani AFC27] Length = 310 Score = 99.7 bits (247), Expect = 6e-19, Method: Composition-based stats. Identities = 45/247 (18%), Positives = 85/247 (34%), Gaps = 30/247 (12%) Query: 115 TTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174 T K + + R + + + +KWA++ V +P ++PKR Sbjct: 59 TEKFVAWQMRERGAKAHIVARRSSCLGSFYKWAMKNALVESDPIYLADKPKRPYRIPVWL 118 Query: 175 TKEDMQQFKSF-----------------WSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQ 215 KE+ Q + + + R + F +L SGLR S++ V+ Sbjct: 119 EKEEQQALQEATQRIDNLPENIFGRTQEHIKAVRRRYDVLFGLILNSGLRISEALAVKVR 178 Query: 216 HLQ-NNIFSIKTQ---KTGTIITVELPDGFM----KLLAMTPIGKETFFINNDKQKMNAT 267 ++ N + + K V LP+ F L F + Sbjct: 179 DVRVMNGIAKSVRIIGKGNRERLVPLPEAFGQVFGAWLQGREGDDFVFAKAPGGKPPGPH 238 Query: 268 QFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 + + +AG++K + H +R AT ++GA ++ A G + + YT Sbjct: 239 AARAYLRRLIERAGIDKPVTPHKLRHTYATRLLESGAELVDIQALLGHVDLSTTQIYTH- 297 Query: 326 ADRIRLG 332 R+ Sbjct: 298 VSEERMA 304 >gi|270285043|ref|ZP_06194437.1| site-specific tyrosine recombinase XerD [Chlamydia muridarum Nigg] gi|270289068|ref|ZP_06195370.1| site-specific tyrosine recombinase XerD [Chlamydia muridarum Weiss] gi|301336439|ref|ZP_07224641.1| site-specific tyrosine recombinase XerD [Chlamydia muridarum MopnTet14] Length = 299 Score = 99.3 bits (246), Expect = 6e-19, Method: Composition-based stats. Identities = 30/224 (13%), Positives = 70/224 (31%), Gaps = 23/224 (10%) Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 K + ++ + L +++V F + + + P +E PK + E++ Sbjct: 63 HQAKESETTLARRLIALKVFFHFLKDAKLIHQQPF--IEHPKVWKRLPSILSTEEVNSLL 120 Query: 184 SF--------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235 + ++ +G+R S+ C + + ++ + + T + V Sbjct: 121 NQPLNTLNLDAYIANRDTAILYTFYATGIRVSELCDLCIGDISDDFIRVTGKGRKTRL-V 179 Query: 236 ELPDGFMKLLAMTPI-----------GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284 + + + +E F++ +K+ + A Sbjct: 180 PISIKARQTIDSYLTMFRERFQKKNPSEEHVFLSIRGKKLERSCVWKRITFYAKLVTTKH 239 Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 S H +R AT + A + G + E YT A Sbjct: 240 ISPHSLRHAFATHLLNNQADLRIIQEMLGHARISSTEIYTHVAS 283 >gi|300115640|ref|YP_003762214.1| integrase family protein [Nitrosococcus watsoni C-113] gi|299541582|gb|ADJ29893.1| integrase family protein [Nitrosococcus watsonii C-113] Length = 310 Score = 99.3 bits (246), Expect = 7e-19, Method: Composition-based stats. Identities = 48/293 (16%), Positives = 99/293 (33%), Gaps = 37/293 (12%) Query: 76 SEYRKSAHW-GSLAVNSRISFESYFD---QIIRKSGD---FDYRKITTKHIRSGVESRKH 128 ++ H+ + + ++ S + + ++G T K + + R Sbjct: 13 KDFLAHLHYAKGYSQGTCYAYNSDLGIWGRWLEEAGKDWCQATHADTEKFVAWQMRERGA 72 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF--- 185 + + + +KWA++ V +P ++PKR KE+ Q + Sbjct: 73 KAHIVARRSSCLGSFYKWAMKNALVESDPIYLADKPKRPYRIPVWLEKEEQQALQEATQR 132 Query: 186 --------------WSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQ- 227 + + R + F +L SGLR S++ V+ ++ N + + Sbjct: 133 IDNLPENIFGRTQEHIKAVRRRYDVLFGLILNSGLRISEALAVKVRDVRVMNGIAKSVRI 192 Query: 228 --KTGTIITVELPDGFM----KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281 K V LP+ F L F + + + +AG Sbjct: 193 IGKGNRERLVPLPEAFGQVFGAWLQGREGDDFVFAKAPGGKPPGPHAARAYLRRLIERAG 252 Query: 282 VNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 ++K + H +R AT ++GA ++ A G + + YT R+ Sbjct: 253 IDKPVTPHKLRHTYATRLLESGAELVDIQALLGHVDLSTTQIYTH-VSEERMA 304 >gi|229820647|ref|YP_002882173.1| tyrosine recombinase XerD [Beutenbergia cavernae DSM 12333] gi|229566560|gb|ACQ80411.1| tyrosine recombinase XerD [Beutenbergia cavernae DSM 12333] Length = 311 Score = 99.3 bits (246), Expect = 7e-19, Method: Composition-based stats. Identities = 43/271 (15%), Positives = 91/271 (33%), Gaps = 32/271 (11%) Query: 85 GSLAVNSRISFESYFDQIIR---KSGDFDYRKITTKHIRSGVESRK--------HTPSSA 133 L+ ++ ++ + G + + + VE+ + + SSA Sbjct: 21 RGLSPHTLAAYRRDLSRYAAYLGALGRARLSDVRPADVDAYVEALRTGSDGGSALSASSA 80 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS--- 190 + + ++R ++A+ + +P + V P + ED+++ S G Sbjct: 81 SRAVVAVRGWHRFAMLEGIAPSDPAVDVRPPSTTKRLPKAIAVEDVERLLVAASAGDGPG 140 Query: 191 --QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTI-ITVELPDGFMKL- 244 + R E L +G R +++ V + + S++ G V L Sbjct: 141 PLRDRALLELLYGTGARITEATSLAVDDIDLDDDAGSVRLFGKGRRERVVPLGRFARDAV 200 Query: 245 ----------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKF 292 LA G F+ + ++ ++ A +A + + S H +R Sbjct: 201 DAYLVRARPVLAQAGTGTPALFLGMRGRPLSRQSAWAILQSAARRADLEEHVSPHTLRHS 260 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYT 323 AT GA + G +V + YT Sbjct: 261 YATHLLAGGADVRVVQELLGHASVTTTQLYT 291 >gi|218263977|ref|ZP_03477908.1| hypothetical protein PRABACTJOHN_03598 [Parabacteroides johnsonii DSM 18315] gi|218222388|gb|EEC95038.1| hypothetical protein PRABACTJOHN_03598 [Parabacteroides johnsonii DSM 18315] Length = 389 Score = 99.3 bits (246), Expect = 7e-19, Method: Composition-based stats. Identities = 48/293 (16%), Positives = 93/293 (31%), Gaps = 30/293 (10%) Query: 65 RKKPTTLKWLISEYRKSA-HWGSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRS 121 ++ TL + EY + + + + R + + ++ D + R Sbjct: 89 KRSCITLIDFLKEYEQEKFGFSASTLKGRRDLRLKVETYLNETCQPDIVLANVDADFCRG 148 Query: 122 GVESRKHTPS------------SAIQFLTSMRVLFKWAVRQEYVAINPCLSV---ERPKR 166 + ++ + +A + AVR+ + NP S+ E+ + Sbjct: 149 FIAFLRYAKNSVRKDGSTISNGAAHHHQAVLNGALNKAVREGILTSNPLKSLASKEKYQP 208 Query: 167 KTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL----QNNIF 222 T E+++ + + AF F ++GLR SD + + Sbjct: 209 SESIREYLTLEELKAAMAAPCPRDDVKRAFLFSCFTGLRLSDVRSLTWGKIIKAPDGHTL 268 Query: 223 SIKT--QKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA 280 I+ QKT ++ V L + L E F + W A Sbjct: 269 YIRVRMQKTQKLLNVPLSKEALDCLYPKDDADEPIFTLPAGASNIERNLTKWM----QNA 324 Query: 281 GVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 + K + H R AT+ GA + G V+ Y K D+ ++ Sbjct: 325 KITKHITYHCSRHSFATMMLTLGADIYTTSKLLGHANVNTTSIYAKIVDQKKI 377 >gi|76789612|ref|YP_328698.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis A/HAR-13] gi|237803298|ref|YP_002888492.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis B/Jali20/OT] gi|237805218|ref|YP_002889372.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis B/TZ1A828/OT] gi|76168142|gb|AAX51150.1| integrase/recombinase [Chlamydia trachomatis A/HAR-13] gi|231273518|emb|CAX10435.1| integrase/recombinase [Chlamydia trachomatis B/TZ1A828/OT] gi|231274532|emb|CAX11328.1| integrase/recombinase [Chlamydia trachomatis B/Jali20/OT] Length = 300 Score = 99.3 bits (246), Expect = 7e-19, Method: Composition-based stats. Identities = 31/224 (13%), Positives = 71/224 (31%), Gaps = 23/224 (10%) Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 K + ++ + L +++V F + + + P +E PK + E++ Sbjct: 65 HKAKESETTLARRLIALKVFFHFLKDAKMLDQQPF--IEHPKIWKRLPSILSTEEVNSLL 122 Query: 184 SFWS--------EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235 S+ +G+R S+ C + + ++ + + T + V Sbjct: 123 DQPLNIPNLDTHIASRDAAILYTFYATGIRVSELCDLCIGDISDDFIRVTGKGRKTRL-V 181 Query: 236 ELPDGFMKLLAM-----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284 + + + +E F++ +K++ + A + Sbjct: 182 PISIKAKQAIDAYLSSFRDELQKKNPSEEHVFLSIRGKKLDRSCVWKRITFYAKLVTTKR 241 Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 S H +R AT + A + G + E YT A Sbjct: 242 ISPHSLRHAFATHLLNNHADLRIIQEMLGHSRISSTEIYTHVAS 285 >gi|70726004|ref|YP_252918.1| hypothetical protein SH1003 [Staphylococcus haemolyticus JCSC1435] gi|68446728|dbj|BAE04312.1| int [Staphylococcus haemolyticus JCSC1435] Length = 391 Score = 99.3 bits (246), Expect = 7e-19, Method: Composition-based stats. Identities = 57/347 (16%), Positives = 114/347 (32%), Gaps = 54/347 (15%) Query: 48 MSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG 107 + + G + +P T K + ++ K + V+S + E I + Sbjct: 44 QAEMIGRQLRNGDYIAPSSS--TFKQVADDWLKQYA-NDVKVSSVRAREKAIQHAIERFN 100 Query: 108 DFDYRKITTKHIRSGVESRKHTPSSA--IQFLTSMRVLFKWAVRQEYVAINPCLSVERPK 165 + I + V+ S + S ++FK+A + P ++RPK Sbjct: 101 TKPIQTIKKHDYQRFVDDISAQYSKNYVDSIVASTNMIFKYAYDTRLIKAMPSEGIKRPK 160 Query: 166 RKTEGIR---------PWTKEDMQQFKSFWSEGSQPRLAFEF---LLYSGLRCSDSCRAG 213 +K K+++ QF P+ +FE L Y+G+R + Sbjct: 161 KKVSVEELEDIEIHKKFLEKDELFQFLKVAKYHHSPQNSFEVFTTLAYTGMRAGELLALK 220 Query: 214 VQHLQ--NNIFSIK----------------TQKTGTII-TVELPDGFMKLLAMTPI---- 250 + NN SI T+KT + I + + ++LL + Sbjct: 221 WSDIDFENNTISITKTYYNPNNNKKHYQILTRKTESSIGKITVDPHVIQLLKDYKVNVQD 280 Query: 251 --------GKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISAD 299 F + + + + +W KA K + S H R + + Sbjct: 281 TWKNELYVDNNFVFTDVNGYPLVIKKLQLWIKAILKKTDITNKQISTHSFRYTHYALLIE 340 Query: 300 AGATAHELMATYGWKTVDQAE-TYTKGADRIRLGIKNSRRISSVVDS 345 AG E+ K ++ Y K + + S++ S ++++ Sbjct: 341 AGVHIKEIQERLRHKDINTTMNIYAKITNSYKK--DASQKFSKLMEN 385 >gi|257894525|ref|ZP_05674178.1| site-specific recombinase [Enterococcus faecium 1,231,408] gi|314949949|ref|ZP_07853247.1| site-specific recombinase, phage integrase family [Enterococcus faecium TX0082] gi|257830904|gb|EEV57511.1| site-specific recombinase [Enterococcus faecium 1,231,408] gi|313643717|gb|EFS08297.1| site-specific recombinase, phage integrase family [Enterococcus faecium TX0082] Length = 392 Score = 99.3 bits (246), Expect = 7e-19, Method: Composition-based stats. Identities = 60/390 (15%), Positives = 122/390 (31%), Gaps = 70/390 (17%) Query: 1 MTPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY 60 M R ++ GKI +YF+ R R + K+ Sbjct: 1 MENMSRFKKHISAT----GKITWYFQAFRTTR-RGFNSKREAQLAYLEMERQHRNQKKRI 55 Query: 61 INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120 ++ + + KW EY +S + + + E + + R GD ++++ ++ Sbjct: 56 ASNDKFSVVSQKWF--EYYRSLN--EQKIATYDKREEQVEILNRWIGDEKLSSLSSEELQ 111 Query: 121 SGVESRKHT----------PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK--- 167 + K +S + + ++FK+ +++ NP V+ PK + Sbjct: 112 KFLFILKEKGINGVDVGYAKNSLQSLVQVLNMIFKYCMKKNLTNENPMKFVKMPKYQLTV 171 Query: 168 --------TEGIRPWTKEDMQQFKSF--WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL 217 + + T ++++ F ++ E + F L Y+G R S++ Q + Sbjct: 172 KDLKESVNSLEDKFLTVDELRTFLNYGIIYEELPMSVLFHVLFYTGCRVSEALALQPQDI 231 Query: 218 QNNI-----------------FSIKTQKT-GTIITVELPD-------GFMKLLAMTPIG- 251 F I+T KT + V + + +L T Sbjct: 232 DFERNEILFYKQTAVKGKSKDFRIETTKTVSSARRVPVTPLVMEKLQELIDVLNKTKRNS 291 Query: 252 ----KETFFI-----NNDKQKMNATQFSIWFKAKATKAGVNKSAHG--VRKFSATISADA 300 ET+ + K + G+NK H R A++ A+ Sbjct: 292 NFVVDETYLFVYLDPGKRGVPYRREYVNDHVKRCVERCGINKDFHTHLARHTMASLVAEY 351 Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIR 330 + L G ++ Y R Sbjct: 352 -CSWDVLKDRLGHTDSTTSKIYRHLTSNER 380 >gi|302668703|ref|YP_003832528.1| tyrosine recombinase XerC2 [Butyrivibrio proteoclasticus B316] gi|302397043|gb|ADL35946.1| tyrosine recombinase XerC2 [Butyrivibrio proteoclasticus B316] Length = 352 Score = 99.3 bits (246), Expect = 7e-19, Method: Composition-based stats. Identities = 59/308 (19%), Positives = 109/308 (35%), Gaps = 54/308 (17%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQI-------IRKSGDFDYRKITTKHI-----RSG 122 + +Y +S+ L+V++ + + F I K D + T + Sbjct: 29 VQDYIESSR-DYLSVSTLLQYTYDFVDFFTFLSSRIEKYKDKPIPEYTLVDMMQLSCEDM 87 Query: 123 VESRK----------HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172 E K P + +FL+++ LF + V++ +A NP +V RP K + + Sbjct: 88 DECMKWYKHPDKDVFRKPRTINRFLSTLSSLFTFYVKRRKLADNPVSAVRRPAVKRKEVN 147 Query: 173 PWTKEDMQQFKSFWSEGS---------QPRLAF------EFLLYSGLRCSDSCRAGVQHL 217 + + QF S G+ R L++G+R S+ + + Sbjct: 148 RLYEGEKSQFLSAVMNGTGLTKRQLPYHERQWLRDYTIARVFLFTGIRVSELVGLDISDV 207 Query: 218 QNNIFSIK-TQKTGTIITVELPDG--------FMKLLAMTPIGKET-FFINNDKQKMNAT 267 S++ +K G I V L D + M ET FI+ KQ++ Sbjct: 208 NLREHSLRVVRKGGNIERVYLDDETDLILREYLAEREEMELTDDETALFISRKKQRIGVR 267 Query: 268 QFSIWFKAKATKAGVN-----KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 K +AG+ + H +R AT A + G K++ Y Sbjct: 268 AVEKLIKKY-QQAGLPSHPNGLTPHRLRATFATDLYSATGDIYRTSKAMGHKSIATTTIY 326 Query: 323 TKGADRIR 330 + +D+ + Sbjct: 327 AEVSDKQK 334 >gi|254819058|ref|ZP_05224059.1| site-specific tyrosine recombinase XerC [Mycobacterium intracellulare ATCC 13950] Length = 232 Score = 99.3 bits (246), Expect = 7e-19, Method: Composition-based stats. Identities = 35/213 (16%), Positives = 69/213 (32%), Gaps = 21/213 (9%) Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS---- 190 + ++++ WAVR+ + +P ++ PK ++ + G+ Sbjct: 5 RRTSAVKAFTAWAVRRGLLDTDPAARLQVPKAHRTLPAVLRQDQALDALAAAKSGAQQGE 64 Query: 191 ----QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLL 245 + RL E L +G+R S+ C + + + K +V + L Sbjct: 65 PMALRDRLIVEMLYATGIRVSELCGLDIDDVDTRHRLVRVLGKGNKQRSVPFGAPAAEAL 124 Query: 246 AMTPIGKETFFINNDKQK---MNATQFSIWFKAK---------ATKAGVNKSAHGVRKFS 293 +N D + A I + A + HG+R + Sbjct: 125 DAWLADGRPALVNADSGPALLLGARGRRIDVRQARTVVHQTVAAVDGAPDMGPHGLRHSA 184 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGA 326 AT + GA + G ++ + YT A Sbjct: 185 ATHLLEGGADLRVVQELLGHSSLATTQLYTHVA 217 >gi|323489572|ref|ZP_08094799.1| tyrosine recombinase xerC [Planococcus donghaensis MPA1U2] gi|323396703|gb|EGA89522.1| tyrosine recombinase xerC [Planococcus donghaensis MPA1U2] Length = 297 Score = 99.3 bits (246), Expect = 7e-19, Method: Composition-based stats. Identities = 45/265 (16%), Positives = 93/265 (35%), Gaps = 27/265 (10%) Query: 85 GSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFLT 138 + + ++ +E + G D R++ H R+ V K + ++ + ++ Sbjct: 18 KNYSEHTVHHYEHDLADFFLFLNAEGVPDIREVEYIHARNYVTKLYDAKLSRTTVSRKIS 77 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRL 194 ++R F++A R+ + S+ PK++ + + +E++ Q + Sbjct: 78 AIRSFFRYANREYGLDEAAFRSLYHPKKEERLPQFFYEEELAQLFKSVLGDDKLSIRNTA 137 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVE------------LPDGF 241 E L +G+R S+ + L + +K G + L D Sbjct: 138 LLELLYATGMRVSECVSIRLTDLDQTMQIVKVMGKGRKERYIPYGQFAQDALEHYLEDAR 197 Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISAD 299 KL+ + F+N+ + + KA VN S H +R AT + Sbjct: 198 PKLMKKQ--DHDYLFVNSRGEAVTDRGIRHILSECMKKASVNSSIYPHMIRHTFATHLIN 255 Query: 300 AGATAHELMATYGWKTVDQAETYTK 324 GA + G + + YT Sbjct: 256 NGADIRTVQELLGHSHLSSTQVYTH 280 >gi|319646365|ref|ZP_08000595.1| hypothetical protein HMPREF1012_01631 [Bacillus sp. BT1B_CT2] gi|317392115|gb|EFV72912.1| hypothetical protein HMPREF1012_01631 [Bacillus sp. BT1B_CT2] Length = 379 Score = 99.3 bits (246), Expect = 7e-19, Method: Composition-based stats. Identities = 50/296 (16%), Positives = 100/296 (33%), Gaps = 42/296 (14%) Query: 70 TLKWLISEYRK-SAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH 128 T + + E+ + + R ++ I+ G + IT + + + Sbjct: 66 TFEDVFKEWWDVHSKTIKRSTRYRK-LSNFKKHILPHFGKLKIKDITRAYCQKVINLIAQ 124 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT-------EGIRPWTKEDMQQ 181 S ++FK+A+R EY+ NP V PK++ E W K +++ Sbjct: 125 DIDSVQNVKIQANLVFKYALRMEYITKNPMEFVVIPKKEENFLSQEEEKRNFWEKAEIKT 184 Query: 182 F--KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ----------------NNIFS 223 F K+ Q + F L+++G+R + + + Sbjct: 185 FLEKAHSQLAPQDYVMFYVLIFTGMRKGELLALEWKDVDLKEKTINIKQTMFFENGEEVI 244 Query: 224 IKTQKTGTIITVELPDGFMKLLAMTPIG-------------KETFFINNDKQKMNATQFS 270 T+K + + + D ++L + I D + + + Sbjct: 245 QTTKKYHSKRIITIDDQTAQILKKWRTQQKEMLLSNGITSEAKYVLIRGDMRPLRLAYPN 304 Query: 271 IWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTK 324 K +++ + HG R A+I +AGA+ E+ A G K + YT Sbjct: 305 DLLNRMIAKNKLHRITIHGFRHSHASILFEAGASIKEVQARLGHKEIQTTMNIYTH 360 >gi|304404723|ref|ZP_07386384.1| integrase family protein [Paenibacillus curdlanolyticus YK9] gi|304346530|gb|EFM12363.1| integrase family protein [Paenibacillus curdlanolyticus YK9] Length = 307 Score = 99.3 bits (246), Expect = 7e-19, Method: Composition-based stats. Identities = 37/276 (13%), Positives = 80/276 (28%), Gaps = 24/276 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV---ESRKHTPSSAIQFLTSMR 141 + +++ + + + R I + S + R + + L+++R Sbjct: 20 RGYSKDTQQGYLNDIQLLCRSLRGKPLPSIRKIDVMSHLTDARERGAGDGARNRALSAIR 79 Query: 142 VLFKWAVRQEYVAINPCLSVERPKR-KTEGIRPWTKEDMQQFKSFWSEGSQPR--LAFEF 198 + FK + E + NP V + K K + + + R Sbjct: 80 LFFKVMIEFERMEHNPAADVSKSKVEKNRLPLYLEESYLGDLLRSVEGNFRVRDIAMLAL 139 Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSI-KTQKTGTIITVELPDG--------FMKLLAMTP 249 + Y GLR S+ + +Q + K + L + + Sbjct: 140 MSYCGLRVSEVSQLNLQDFDPEAGQLSILGKGRKWRYIPLQPSIITLLKQCLQERIPPKR 199 Query: 250 IGKETFFINNDKQKMNATQFSIWFKA--------KATKAGVNKSAHGVRKFSATISADAG 301 + FF++ ++++ + A SAH +R AT Sbjct: 200 KNEHPFFVSRLGRRISRRTVQFIVERTFEQFKQQHEHMAERKFSAHKLRHSFATNLLSTD 259 Query: 302 A-TAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336 L G + + YT D+ + + Sbjct: 260 KVDLRTLQELLGHADISTTQIYTHITDKKKKQAMAA 295 >gi|218886780|ref|YP_002436101.1| integrase family protein [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218757734|gb|ACL08633.1| integrase family protein [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 355 Score = 99.3 bits (246), Expect = 7e-19, Method: Composition-based stats. Identities = 52/323 (16%), Positives = 103/323 (31%), Gaps = 25/323 (7%) Query: 15 RTRHGKIIYYFRKGHGRRIRLPYPHESTFI-PAYMSALTGSTPKREYINSPRKKPTTLKW 73 + RHGK + Y R++LP + A+ + +L Sbjct: 6 KDRHGKPVIY------GRVKLPSGKHREHRCTTWREAVAWEESVKVTQPDTVTGTVSLAA 59 Query: 74 LISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVE--SRKHTP 130 L + Y +A + F D + +++T I + ++ +R+ + Sbjct: 60 LFTAYLDHVQARGMADKTYGEKRQAFRDLLADVKPSLPVQRVTYALIEAHLDGIARRISG 119 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCL-SVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 + A + ++ + W VR + PC VER + T ED + Sbjct: 120 AQANRRRKNILAAYSWGVRAFKLPE-PCPWRVERYREDKRPKYVPTPEDFWKVHDAAKSP 178 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ----NNIFSIKTQKTG--TIITVELPDGFMK 243 R L++ R + R L + +K G + + Sbjct: 179 D-ERAMLFTALHTAARKEELFRMQRSDLDFANRRLRLWTRKRKGGGLEEDWIPMTQALHD 237 Query: 244 LLAMTPIG---KETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISAD 299 L + +E F+++ + + + KAGV + H +R SA++ Sbjct: 238 CLLRHRLQMGFREHVFVSSRGTPWVSA--THLMYSLCDKAGVRRFGFHAIRHLSASMLDG 295 Query: 300 AGATAHELMATYGWKTVDQAETY 322 AG + A ++ Y Sbjct: 296 AGVPLSVIQAILRHRSALTTSRY 318 >gi|255349272|ref|ZP_05381279.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis 70] gi|255503808|ref|ZP_05382198.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis 70s] Length = 300 Score = 99.3 bits (246), Expect = 7e-19, Method: Composition-based stats. Identities = 31/224 (13%), Positives = 71/224 (31%), Gaps = 23/224 (10%) Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 K + ++ + L +++V F + + + P +E PK + E++ Sbjct: 65 HKAKESETTLARRLIALKVFFHFLKDAKMLDQQPF--IEHPKIWKRLPSILSTEEVNSLL 122 Query: 184 SFWS--------EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235 S+ +G+R S+ C + + ++ + + T + V Sbjct: 123 DQPLNIPNLDTHIASRDAAILYTFYATGIRVSELCDLCIGDISDDFIRVTGKGRKTRL-V 181 Query: 236 ELPDGFMKLLAM-----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284 + + + +E F++ +K++ + A + Sbjct: 182 PISIKAKQAIDAYLSSFRDELQKKNPSEEHIFLSIRGKKLDRSCVWKRITFYAKLVTTKR 241 Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 S H +R AT + A + G + E YT A Sbjct: 242 ISPHSLRHAFATHLLNNHADLRIIQEMLGHSRISSTEIYTHVAS 285 >gi|188492334|ref|ZP_02999604.1| integrase for prophage CP-933T [Escherichia coli 53638] gi|188487533|gb|EDU62636.1| integrase for prophage CP-933T [Escherichia coli 53638] Length = 341 Score = 99.3 bits (246), Expect = 7e-19, Method: Composition-based stats. Identities = 40/270 (14%), Positives = 82/270 (30%), Gaps = 26/270 (9%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKI--------TTKHIRSG 122 L L+ + + + + ++ + + GD + + + Sbjct: 57 LSELVDIWYEM---HGKTLTTGEERQAKLKAVCERMGDPLVSEFDRNMFAVYRKRRLSGE 113 Query: 123 VESRKHTP---SSAIQFLTSMRVLFKWAVRQE-YVAINPCLSVERPKRKTEGIRPWTKED 178 + K P ++ + + + +F R + NP V K + +++ Sbjct: 114 WSANKKKPTKEATVNREQSYLHAVFSELKRLGAWAGENPLEGVRHFKVSESELSFLYEDE 173 Query: 179 MQQFKSFWSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236 +++ S E L L +G R S++ + + + K+ TV Sbjct: 174 IERLLSVCDESGNADLGSVVRVCLATGARWSEAEKLTQSQVLPGRITFTNTKSKKNRTVP 233 Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATI 296 + D KLL P + F N F+ K + + H +R A+ Sbjct: 234 ISDNIQKLL---PKRRGRLFSN------CYEAFTWALKKAKIELPEGQRTHVLRHTFASH 284 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGA 326 G L G T+ Y A Sbjct: 285 FMMNGGNILVLQQILGHSTILMTMRYAHFA 314 >gi|255507490|ref|ZP_05383129.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis D(s)2923] gi|296439216|gb|ADH21369.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis E/11023] Length = 300 Score = 99.3 bits (246), Expect = 7e-19, Method: Composition-based stats. Identities = 32/224 (14%), Positives = 71/224 (31%), Gaps = 23/224 (10%) Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 K + ++ + L +++V F + + + P +E PK + E++ Sbjct: 65 HKAKESETTLARRLIALKVFFHFLKDAKMLDQQPF--IEHPKIWKRLPSILSTEEVNSLL 122 Query: 184 SFWS--------EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235 S+ +G+R S+ C + + ++ + + T + V Sbjct: 123 DQPLNIPNLDTHIASRDAAILYTFYATGIRVSELCDLCIGDISDDFIRVTGKGRKTRL-V 181 Query: 236 ELPDGFMKLLAM-----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284 + + + +E F++ +K++ + A + Sbjct: 182 PISIKAKQAIDAYLSSFRDELQKKNPSEEHVFLSIRGKKLDRSCVWKRITFYAKLVTTKR 241 Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 S H +R AT D A + G + E YT A Sbjct: 242 ISPHSLRHAFATHLLDNHADLRIIQEMLGHSRISSTEIYTHVAS 285 >gi|160932995|ref|ZP_02080384.1| hypothetical protein CLOLEP_01837 [Clostridium leptum DSM 753] gi|156868069|gb|EDO61441.1| hypothetical protein CLOLEP_01837 [Clostridium leptum DSM 753] Length = 393 Score = 99.3 bits (246), Expect = 7e-19, Method: Composition-based stats. Identities = 44/297 (14%), Positives = 89/297 (29%), Gaps = 44/297 (14%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129 + ++ KS ++V+ S+++Y + +I I+S + K Sbjct: 63 SFGDWAEKFLKSKEADGVSVSQLNSYKNYCRNHLSPLYMKSLSEILPADIQSIINETKLA 122 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 ++ + +F+ A+ + NP V PK E R +D Q++ Sbjct: 123 KNTLKAIRNTASQIFRLAIENRAIDFNPADYVRIPKIAPEFHRDALTDDQQRWIRETPH- 181 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII---------------- 233 + + A +LYSGLR ++ + N +I K+ +I Sbjct: 182 -RAQRAAMLMLYSGLRRGEATALTWADVDLNTGTISVTKSAEMINGKPHIKTTKTETGIR 240 Query: 234 TVELPDGFMKLLAMTPIGK----ETFFINNDKQKMNATQFSIWFKAKATKAGVNK----- 284 V +P + L + + + M + + + V Sbjct: 241 IVRIPQVLIDFLRNEKDSEFPLCMHVIHSARGKMMTNQAWRCMWDSYLLDLNVKYGYGGK 300 Query: 285 ----------------SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324 + H +R A++ AG G + YT Sbjct: 301 INKFDPHGVVMRIPAFTPHWLRHTFASLLYRAGVDVLTARDQLGHSDIKTTLMIYTH 357 >gi|330988384|gb|EGH86487.1| phage integrase family site specific recombinase [Pseudomonas syringae pv. lachrymans str. M301315] Length = 367 Score = 99.3 bits (246), Expect = 7e-19, Method: Composition-based stats. Identities = 55/351 (15%), Positives = 111/351 (31%), Gaps = 43/351 (12%) Query: 7 LPPFVTKERT-RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65 LPP + ++ R+G Y +R R+ + A + + + Sbjct: 13 LPPNLYRKTDKRNGHTYYTYRDPVTGRVF-GLGKDKAAAIMEAVAANHADVLKPTLAQRI 71 Query: 66 KKP-----TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120 +P T + EY L+ + S +S + G+ R I T I Sbjct: 72 AEPVAVDDRTFADWLGEYELIYTERGLSAQTTRSMKSRLKTVNSAFGEKFVRNIRTMDIA 131 Query: 121 SGVE--SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 + + S+ + + + +R +F A+ + +NP + + + K + R Sbjct: 132 TFLATFSKAGKAPMSKAYRSLLRDVFNEAIAAGWCDLNPVDATKPARSKVKRARL----S 187 Query: 179 MQQFKSFWSEGSQP--RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236 ++ +K+ + +P + A E L +G R D + + + KTG + + Sbjct: 188 LELWKAAHTATDRPWLKRAMELALLTGQRRDDIGSMLFKDEHDGFLHVIQSKTGARLRIS 247 Query: 237 LPDGFMK----------------LLAMTPIGKETFFINNDKQKMNATQFSIWFKAK---- 276 L T + + ++ F Sbjct: 248 TSLRLEAIGLDLSSVIKSCRDRVLSKHLVHHTRTVAVAKAGNPIKLNTLTLAFAEARDKG 307 Query: 277 ATKAGVNK-----SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 A G++ S H +R +A + A G +L G + E Y Sbjct: 308 AAALGIDLGANPPSFHEMRSLAARLHALEGRDPQKL---LGHRNAAMTEMY 355 >gi|319641682|ref|ZP_07996365.1| phage integrase family Site-specific recombinase [Bacteroides sp. 3_1_40A] gi|317386656|gb|EFV67552.1| phage integrase family Site-specific recombinase [Bacteroides sp. 3_1_40A] Length = 401 Score = 99.3 bits (246), Expect = 7e-19, Method: Composition-based stats. Identities = 38/230 (16%), Positives = 81/230 (35%), Gaps = 13/230 (5%) Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 + ++ + ++A + + + A R+ + N ++ + + E+++ Sbjct: 152 KVMVNKPISRNTASAYWNIFKQVLTKAYRERRLVDNIASLLDNIPCTIPVKQSLSLEEVR 211 Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL-----QNNIFSIKTQKTGTIITV 235 + + R A F SGLR SD +++ + K KT V Sbjct: 212 KLYNSECSVPVVRKAAIFSCLSGLRISDILNLKWENIQTYADGGHYLDFKCVKTQRQTQV 271 Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFS 293 + D +L+ K + + + M W K + G+NK + H R Sbjct: 272 PIGDDAYELIQPQTTDK--YIFSGFNRTMTYRVMQDWIK----ECGINKHITFHCFRHTY 325 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343 A++ + G + + K V + Y AD + R+++V Sbjct: 326 ASLQLELGTDIYTVQHLLNHKNVSTTQIYASHADPKTREAADRIRLTNVK 375 >gi|251780250|ref|ZP_04823170.1| phage integrase [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243084565|gb|EES50455.1| phage integrase [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 391 Score = 99.3 bits (246), Expect = 7e-19, Method: Composition-based stats. Identities = 63/380 (16%), Positives = 131/380 (34%), Gaps = 70/380 (18%) Query: 11 VTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP-----R 65 + K++ ++GK Y+ R H + +R P Y + K + I + Sbjct: 5 IYKKKLKNGKEYYFHRLRH-KNLRKPKDI-------YAKTVKELEEKIKLITHDLDYNIQ 56 Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGV 123 + S++ H+ L ++++ +E+ + I+ S D ++IT+K I++ Sbjct: 57 NNKDCFETFFSDWLFDVHFMGLKPSTQMRYETIYRNHIKNSELSDIKIKEITSKDIQTYY 116 Query: 124 ESRKHTPSSAIQFLTSMRVLF----KWAVRQEYVAINPCLSVERPK-------RKTEGIR 172 K ++ + S+ + ++A ++ N ++ PK K + Sbjct: 117 N-NKIKRGCSVTLVKSIHKIITPCIRYAYNNNFIIKNFTSALILPKETEKDKLNKKSSVI 175 Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-------------- 218 P+T E+ ++F S G++ + F L SGLR + + + Sbjct: 176 PFTLEEQKKFISVI-RGNKFEMIFLTALNSGLREGELLALTWKDINFKDKYINVNKNLSV 234 Query: 219 -----------NNIFSIKTQKTGTIIT-VELPDGFMKLLAMTP--------------IGK 252 + ++T KT I V +P L Sbjct: 235 VTEISKENGRGGSTLEVQTPKTKKGIRKVSIPSFLATALKQYKKQQIKNRLKMNQFYNDN 294 Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATY 311 F + +N + FK + + H +R AT + G +A + + Sbjct: 295 NLVFCDELGNYLNRDKIVYRFKKVLEDNKMKEIKFHDLRHTYATRLFELGESAKTVQSFL 354 Query: 312 GWKTVDQA-ETYTKGADRIR 330 G + +TYT D ++ Sbjct: 355 GHSDISVTLDTYTHVLDSMK 374 >gi|268315977|ref|YP_003289696.1| integrase family protein [Rhodothermus marinus DSM 4252] gi|262333511|gb|ACY47308.1| integrase family protein [Rhodothermus marinus DSM 4252] Length = 320 Score = 99.3 bits (246), Expect = 7e-19, Method: Composition-based stats. Identities = 44/284 (15%), Positives = 101/284 (35%), Gaps = 29/284 (10%) Query: 85 GSLAVNSRISFESYF----DQIIRKSGDFDYRKITTKHIRSGVES-RKHTPSSAIQFLTS 139 + + + ++ + G F +R + + + +K S +LT+ Sbjct: 35 KNKSPETVGTYRRALHEFERWFATQRGQFRFRVADVQRYKQYLMREKKLHQVSVSTYLTA 94 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKT-EGIRPWTKEDMQQFKSFWS-----EGSQPR 193 +R ++ V + NP +V+ +R + T+ +++Q + G + R Sbjct: 95 LRRFCQYLVDIGLLPENPARTVKGNRRPSSHSRSVLTRVEIEQLLAVLDQDTSQIGLRDR 154 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIF--SIKTQKTG---TIITVELPDGFMKLLAM- 247 +L++GL + RA V+ L + ++ Q G V L ++ L Sbjct: 155 AIVHMMLFAGLSEVEIVRADVRDLDQTLLGWYLRVQGKGHTAKDQQVPLDPPVVEALQAY 214 Query: 248 -----TPIGKETFFINND----KQKMNATQFSIWFKAKATKAGVNK---SAHGVRKFSAT 295 E F+++ Q++N K AG+ + + H + +A Sbjct: 215 LNTRVPLHPGEPLFVSHGHRSEGQRLNTRSVRSRIKQHLEAAGITRRGVTPHSLTHTAAL 274 Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339 I + G + E+ T++ Y + + + +R+ Sbjct: 275 IWLNQGMSIEEVQRRMRHGTLETTMIYYRKQGLLNRDPEELKRL 318 >gi|54023527|ref|YP_117769.1| putative phage integrase [Nocardia farcinica IFM 10152] gi|54015035|dbj|BAD56405.1| putative phage integrase [Nocardia farcinica IFM 10152] Length = 290 Score = 99.3 bits (246), Expect = 7e-19, Method: Composition-based stats. Identities = 46/279 (16%), Positives = 86/279 (30%), Gaps = 18/279 (6%) Query: 65 RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124 +K P + + Y L + + ++I R+ G IT + S Sbjct: 3 KKTPASWAPTLEAYALHMAAAGLPPTTIRLRCKHLERIAREIGRAGPWTITADQLVSWAG 62 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 + + + +S ++W + NP E P+ P D + Sbjct: 63 QQNWATETRRSYRSSCMKFWRWGIASGLTDTNPVE--EWPRIPGAAANPRPAPDRVYRAA 120 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ---NNIFSIKTQKTGTIITVELPDGF 241 + + R+ GLR ++ + ++ L + I K G + +PD Sbjct: 121 LAAADPRTRIMLRLAAECGLRRAEVAQVHIRDLVEDFDGWVLIVHGKGGKDRRLPIPDDI 180 Query: 242 MKLLAMTPIGKET---------FFINNDKQKMNATQFSIWFKAKATK---AGVNKSAHGV 289 L+ G F D ++A + K +G + H + Sbjct: 181 AALIRAGARGHSPHDHTPSRGWLFPGQDHGHLSAAHVGVLCSRALAKVQTSGQVWTMHKL 240 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 R AT + A + G +V + YT DR Sbjct: 241 RHRFATTAYRATRDIRAVQEALGHSSVATTQIYT-AVDR 278 >gi|222446012|ref|ZP_03608527.1| hypothetical protein METSMIALI_01661 [Methanobrevibacter smithii DSM 2375] gi|261349449|ref|ZP_05974866.1| integrase-recombinase protein [Methanobrevibacter smithii DSM 2374] gi|222435577|gb|EEE42742.1| hypothetical protein METSMIALI_01661 [Methanobrevibacter smithii DSM 2375] gi|288861812|gb|EFC94110.1| integrase-recombinase protein [Methanobrevibacter smithii DSM 2374] Length = 302 Score = 99.3 bits (246), Expect = 7e-19, Method: Composition-based stats. Identities = 44/279 (15%), Positives = 90/279 (32%), Gaps = 35/279 (12%) Query: 76 SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQ 135 Y S + + N+ ++ S + K S ++ Sbjct: 31 ESYITSLKNNNYSQNTIKTYSSIIHKFTTYL-KNQIAIYNEKEFIKYFNSYIL----YLK 85 Query: 136 FLTSMRVLFKWAVR---QEYVAINPC---LSVERPKRKTEGIRPWTKEDMQQFKS--FWS 187 + ++ + + V ++++ N S+ PKR T+++++Q W Sbjct: 86 QVKNVSQNYIYLVTVVVKKFLEFNNIHFLDSITTPKRIKSPPNFLTQKEVKQLLDSITWD 145 Query: 188 EGS----------QPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITV 235 E S + +L L SGLR S+ V ++ + SI K + + Sbjct: 146 ENSDSDFRIITKLRDKLIVTLLYSSGLRVSELINLTVDNVNFEGKQLSI-VGKNNSRVI- 203 Query: 236 ELPDG-----FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHG 288 L D K L +N + + K ++G+ K + H Sbjct: 204 -LLDESTKQLIQKYLEKRTQKSNYLVVNKSGNPLTPRYVQLMIKKYGNESGIEKKITPHI 262 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 +R AT + G + G + + Y++ A+ Sbjct: 263 LRHSYATHLFEQGVNIKIIQQLLGHSNLSTTQIYSQDAN 301 >gi|75812296|ref|YP_319915.1| Phage integrase [Anabaena variabilis ATCC 29413] gi|75705052|gb|ABA24726.1| Phage integrase [Anabaena variabilis ATCC 29413] Length = 320 Score = 99.3 bits (246), Expect = 7e-19, Method: Composition-based stats. Identities = 54/284 (19%), Positives = 107/284 (37%), Gaps = 33/284 (11%) Query: 85 GSLAVNSRISFESYFDQIIRKSGD-------FDYRKITTKHIRSGVES--RKHTPSSAIQ 135 LA+ SR++ E + I R + ++ + +H + + +K+ P++ + Sbjct: 27 AGLALGSRLTIEQALNAIARLISNGECDAYTLNWAALRYQHTAAIRTALMQKYAPATTNK 86 Query: 136 FLTSMRVLFKWAVRQEYVA-INPCLSVE----RPKRKTEGIRPWTKEDMQQFKSFW---- 186 L ++R + K A+R E + + +V+ + KRK G R T ++ Sbjct: 87 MLCALRRVLKEALRLELMDATDYAKAVDFKNVKVKRKLRG-RALTSAEIAALIEVCLCDP 145 Query: 187 -SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKL 244 G + L +G+R ++ ++ L N I+ K TV LP M L Sbjct: 146 TPCGVRDAALIAILRGAGVRRAEVVNLELRDLSSNGALEIRQGKGDKDRTVYLPTAAMAL 205 Query: 245 ----LAMTPIGKETFFINNDK------QKMNATQFSIWFKAKATKAGVNK-SAHGVRKFS 293 L + K ++M + + +A+++GV S H R+ Sbjct: 206 VEDWLRVRGRKTGALLCPIRKGGQVQLRRMTPQAVLLIVRKRASESGVESFSPHDFRRTF 265 Query: 294 ATISADAGATAHELMATYGWKTVDQAETY-TKGADRIRLGIKNS 336 + D+G + G + Y +G + RL ++N Sbjct: 266 CSDLLDSGTDIVTVQKLAGHASPATTSKYDRRGEETKRLAVENL 309 >gi|294102004|ref|YP_003553862.1| integrase family protein [Aminobacterium colombiense DSM 12261] gi|293616984|gb|ADE57138.1| integrase family protein [Aminobacterium colombiense DSM 12261] Length = 294 Score = 99.3 bits (246), Expect = 7e-19, Method: Composition-based stats. Identities = 37/259 (14%), Positives = 81/259 (31%), Gaps = 26/259 (10%) Query: 88 AVNSRISFESYFDQIIR-----KSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRV 142 + N+ +++ + + + + + + SS + + S+R Sbjct: 24 SENTILAYNRDIKAWLDFCDKNDQPAYPPNQTYLERYQRSLHEEGKKRSSQQRAIASLRS 83 Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEG---IRPWTKEDMQQFKSFWSEGS----QPRLA 195 ++ ++ V V P +G + ++++ S S + R Sbjct: 84 WLRYLDSEKLVE----EEVTLPTLPLKGDSLPHILNEGEVERIFEACSGNSFLALRDRAI 139 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMK-----LLAMTP 249 E GLR S+ C ++ + + +++ K G + + + P Sbjct: 140 LETAYGCGLRASELCTICLRDIDFSGRTLRIFGKGGKERIIPFLGEVSRRVGFYMEKARP 199 Query: 250 IGK-ETFFINNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISADAGATAH 305 + FI+ + K + AG++ S H +R AT G Sbjct: 200 DAHVQELFISKTGNPLRREDIWRIVKKRGAAAGISSSRLFPHILRHSFATHLLRRGMDLR 259 Query: 306 ELMATYGWKTVDQAETYTK 324 L G T+ E Y Sbjct: 260 TLQELLGHATIATTEKYVH 278 >gi|78355667|ref|YP_387116.1| hypothetical protein Dde_0620 [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78218072|gb|ABB37421.1| hypothetical protein Dde_0620 [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 281 Score = 99.3 bits (246), Expect = 7e-19, Method: Composition-based stats. Identities = 41/277 (14%), Positives = 92/277 (33%), Gaps = 16/277 (5%) Query: 75 ISEYRKSAHWGSLAVNS----RISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHT 129 +EY + + R +F +FD +I + + V H+ Sbjct: 6 WAEYYVDHAEQTWPHKTFDEKRRAFRRFFDTKICKPGDPITTVSVEKASKVLAVLKEHHS 65 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVA-INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 ++ + ++ + W ++ + NP +R + ED++ Sbjct: 66 GNNLNRMRKNLIAAWNWGIKNHKIPAQNPFALTDRSSEIIKLRYVPPMEDLKAVVDV--A 123 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ---NNIFSIKTQKTGTIIT---VELPDGFM 242 + RL Y+ R + R + N I ++ G + + + Sbjct: 124 AGEQRLMLLTAFYTAARKCELFRLRWTDVDFASNKIGLWTKKRKGGNLELDLMPMAKPLR 183 Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAG 301 LL G E+ + D+ + + W K +AGV HG+R +A+ ++G Sbjct: 184 SLLEEHHRGAESEHVF-DQSPHSQNSNNRWLKELCKEAGVKAFGFHGIRHLAASYGIESG 242 Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRR 338 A+ ++ K+ + Y + + ++ Sbjct: 243 ASIVDVQELLRHKSANVTARYIRRLKKGNRAVEALEM 279 >gi|296450797|ref|ZP_06892548.1| integrase/recombinase [Clostridium difficile NAP08] gi|296260358|gb|EFH07202.1| integrase/recombinase [Clostridium difficile NAP08] Length = 280 Score = 99.3 bits (246), Expect = 7e-19, Method: Composition-based stats. Identities = 37/263 (14%), Positives = 92/263 (34%), Gaps = 18/263 (6%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV---ESRKHTPSSAIQFLTSMR 141 +L ++ ++ + +G ++++T + P + + ++R Sbjct: 16 KNLKESTTKAYCHALSPFLNATG-KPWQELTVADADDYLTTKRRMGILPETYNHYYGALR 74 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY 201 ++K ++ + + R KR ++E++ + + + F + Sbjct: 75 FMYKRVLKLNWDED----EIPRMKRDRSLPTVLSREEVNAILDVTT-NLKYKAIFAVMYS 129 Query: 202 SGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLL-----AMTPIGKET 254 GLR S++ + N+ I+ K L D + +L Sbjct: 130 GGLRVSEATHLHYDDISRSNHSIHIRNTKNRMDRYTILADRTLDILTQYWFQCQRPRNIL 189 Query: 255 FFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYG 312 F + ++ + + + + +AG+ K ++H R A+ + G + A G Sbjct: 190 FPSQTTGEYLDISAVNQVLRRSSERAGIPKHVTSHAFRHSFASHLLEDGCDIKYIQALLG 249 Query: 313 WKTVDQAETYTKGADRIRLGIKN 335 E Y +++ LGIK+ Sbjct: 250 HLDPKSTEIYLHVSNKTLLGIKS 272 >gi|4520380|dbj|BAA75916.1| similar to integrase [Pseudomonas putida] Length = 399 Score = 99.3 bits (246), Expect = 7e-19, Method: Composition-based stats. Identities = 58/356 (16%), Positives = 118/356 (33%), Gaps = 40/356 (11%) Query: 7 LPPFVTKERT-RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS-- 63 LPP + ++ R+G Y +R R+ ++ I +SA +++ Sbjct: 44 LPPNLYRKTDKRNGVTYYTYRDPVSDRMFGLGSDKAKAIAEAVSANMALQVAPPTLSARI 103 Query: 64 ---PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120 P I EY L+ +S + +++ + G+ R +TT I Sbjct: 104 APEPSAPDRKFSEWIVEYFADLKDRELSESSMRNLRMRLNRVEKAFGERGIRTLTTMDIA 163 Query: 121 SGVES--RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 + + ++ A + +R LF A+ + +V NP + + + K + R T E Sbjct: 164 DYLSTYVKEGKAQMARAMRSLLRDLFMGAMARGWVDYNPVEATKAARVKIKRQR-LTLEL 222 Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE-- 236 + ++ R A E L +G R D + + + KTG + + Sbjct: 223 WKAIYEEAAQPWLKR-AMELALITGQRREDIASFVFRDEVDGFLQVVQSKTGARLRISTS 281 Query: 237 -----LPDGFMKLLAM---------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282 + +++ T + S F A +A V Sbjct: 282 VTLECISLSLGEVIRRCRDRVLSKHLVHHHRTISRAKAGSPIMLDTISKEFAAARDRAAV 341 Query: 283 NK---------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY--TKGAD 327 + H R +A + + G + G ++ + Y ++GA+ Sbjct: 342 KLGLDLGASPPTFHEQRSLAARLHDEEG---RDAQRLLGHRSAKMTDLYRDSRGAE 394 >gi|294791010|ref|ZP_06756168.1| putative tyrosine recombinase XerC [Scardovia inopinata F0304] gi|294458907|gb|EFG27260.1| putative tyrosine recombinase XerC [Scardovia inopinata F0304] Length = 322 Score = 99.3 bits (246), Expect = 7e-19, Method: Composition-based stats. Identities = 48/291 (16%), Positives = 89/291 (30%), Gaps = 48/291 (16%) Query: 82 AHWGSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIRSGV--ESRKHTPSSAIQF 136 A L+ ++R ++ D + G K+ T +R + ESR+ SS + Sbjct: 15 AENQGLSQHTRTAYRGDVDQCLHFLSLRGVDSIEKVNTDLLRMWMAYESRRLAKSSLARK 74 Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-------- 188 + ++R F + +P + P+ TK+ E Sbjct: 75 IVAVRGFFAYTYVHGLSHSDPAADLGTPRLPQTLPSVLTKKQASALMDKAEEVYQTDRKE 134 Query: 189 -------GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-----E 236 + E L +G+R ++ + + ++K G V Sbjct: 135 QSGRTAIDLRNDAIVELLYATGIRVAELVGLNTGDIDFSSRTVKVTGKGNKQRVVPFGAP 194 Query: 237 LPDGFMKLLAMTPI----------------------GKETFFINNDKQKMNATQFSIWFK 274 + L E F+ + ++N Q Sbjct: 195 ASHALQEWLNRGRPSLVRKNSADGSSAGSKKNEDRQDSEAVFVGSRGGRINQRQVRQVVH 254 Query: 275 AKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 A +AGV + S H +R +AT D GA E+ G ++ + YT Sbjct: 255 RLAAEAGVPDISPHSLRHSAATHLLDGGADLREVQEMLGHSSLATTQRYTH 305 >gi|114775560|ref|ZP_01451128.1| site-specific recombinase, phage integrase family protein [Mariprofundus ferrooxydans PV-1] gi|114553671|gb|EAU56052.1| site-specific recombinase, phage integrase family protein [Mariprofundus ferrooxydans PV-1] Length = 331 Score = 99.3 bits (246), Expect = 7e-19, Method: Composition-based stats. Identities = 54/327 (16%), Positives = 110/327 (33%), Gaps = 22/327 (6%) Query: 11 VTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPA---YMSALTGSTPKREYINSPRKK 67 + K + ++G+ Y + H ++ + F + + + + +++++ + Sbjct: 3 IQKRKWKNGRTTYRVQVYHRGKVVADATFD--FRRDAQLFEAEVKTKLQRGDFVDTRLAE 60 Query: 68 PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR- 126 T + Y ++ +R KI T I +SR Sbjct: 61 RTLFGEALERYAENI--VPRKKGARQEMSRVRTLSRSSLVRLPLSKIRTPDIIKYRDSRL 118 Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQ---EYVAINP-CLSV-ERPKRKTEGIRPWTKEDMQ 180 + P+S L + LF A R Y++ NP V K+ R E+ Q Sbjct: 119 KEVGPNSVRLELAVISHLFTVASRDWGMNYLS-NPVARGVMPSVKQTARDRRLQPGEEDQ 177 Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240 ++ G F L + +R ++ + + NI + K G V L Sbjct: 178 LMQACKEYGGVIGDIVMFALETAMRRAEIASLRWEDIHGNIARLHDTKNGERRDVPLSSR 237 Query: 241 FMKLLAMTPIGKETFFINNDKQKMN--ATQFSIWFKAKATKAGV-NKSAHGVRKFSATIS 297 +++ + NDK+ S F AG+ + H +R + + Sbjct: 238 AREIIHRRAKVRSL----NDKRVFGIAPNGISQAFSRVCKHAGIVDLRFHDLRHEATSRL 293 Query: 298 ADAGATAHELMATYGWKTVDQAETYTK 324 + G ++ + G KT+ + YT Sbjct: 294 FERGLNPMQVASITGHKTLQMLKRYTH 320 >gi|34540214|ref|NP_904693.1| phage integrase family site specific recombinase [Porphyromonas gingivalis W83] gi|34396526|gb|AAQ65592.1| site-specific recombinase, phage integrase family/ribosomal subunit interface protein [Porphyromonas gingivalis W83] Length = 400 Score = 99.3 bits (246), Expect = 7e-19, Method: Composition-based stats. Identities = 42/255 (16%), Positives = 85/255 (33%), Gaps = 23/255 (9%) Query: 91 SRISFESYFDQIIRKSGD-FDYRKITTKHIRSGV---ESRKHTPSSAIQFLTSMRVLFKW 146 Y +G+ F+ + R+ + SS + L++++ +K+ Sbjct: 29 YAQDLNRYAAFFSEHTGEVFEPSERDKDVARAWLFSLMEAGQKSSSVQRRLSALKSFYKY 88 Query: 147 AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ-----FKSFWSEGSQPRLAFEFLLY 201 V+ + +P + PK++ +M++ + E + RL E L Sbjct: 89 MVKIGLIGQSPVRMLRGPKKERPLPVFVPNNEMEKVLNKPIREDDFEAVRDRLILETLYE 148 Query: 202 SGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLL------AMTPIGK-E 253 GLR S+ +++ I+ K V ++ +GK + Sbjct: 149 VGLRRSEIATLKDSAVEDKAGCIRIIGKRNKERIVPFGKRLQDMIDNYRNIREEKVGKSD 208 Query: 254 TFFINNDKQKMNATQFSIWFKAKATKAGVNK----SAHGVRKFSATISADAGATAHELMA 309 FF++ D + + + A V S H +R AT + GA + Sbjct: 209 FFFVSLDGRPLTGEVVYKIVR--TALANVPHLTKRSPHVLRHSFATEMLNHGADLISVKE 266 Query: 310 TYGWKTVDQAETYTK 324 G ++ YT Sbjct: 267 LLGHDSLSTTVQYTH 281 >gi|224373197|ref|YP_002607569.1| phage integrase [Nautilia profundicola AmH] gi|223589506|gb|ACM93242.1| phage integrase [Nautilia profundicola AmH] Length = 301 Score = 99.3 bits (246), Expect = 7e-19, Method: Composition-based stats. Identities = 52/272 (19%), Positives = 102/272 (37%), Gaps = 21/272 (7%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH 128 T L +EY + ++ ++ + +SY+ K G K + V Sbjct: 12 TFDELFAEYCEIMK-HTMTSHTLRTKQSYYKTHFGHKYGHIIITDFKYKDAQLFVNELLD 70 Query: 129 T---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK-- 183 P + + +VL+K+A+ EY NP V+ PK +T E++++F Sbjct: 71 KGLQPKTVKNIVDIFKVLYKYAIMNEYCEKNPFEFVQLPKFDNRIYFNFTDEEIKRFIYT 130 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSI---KTQKTGTIITVELPD 239 + + R F FLL G R ++ H+ N K K +++ ++ D Sbjct: 131 AINFPNVKFRGIFTFLL-HGRRLNEVLSLTWDHIDFENKQYFIPPKINKAKKLMSYQMTD 189 Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNA------TQFSIWFKAKATKAGVNK--SAHGVRK 291 +L I + ++ ++ FK A +NK H +R Sbjct: 190 ILEDILLRQKIINDVECPRSEYVFPSSVTCQKIKDIRKQFKKLLQYANINKKMRIHDIRH 249 Query: 292 FSATISADA-GATAHELMATYGWKTVDQAETY 322 A+ + ++ G + E+ T G +++ + Y Sbjct: 250 LVASYAINSLGLSVEEVSYTLGHTSIEITQRY 281 >gi|157827676|ref|YP_001496740.1| site-specific tyrosine recombinase XerC [Rickettsia bellii OSU 85-389] gi|166918898|sp|A8GXV3|XERC_RICB8 RecName: Full=Tyrosine recombinase xerC gi|157802980|gb|ABV79703.1| site-specific tyrosine recombinase XerC [Rickettsia bellii OSU 85-389] Length = 305 Score = 99.3 bits (246), Expect = 7e-19, Method: Composition-based stats. Identities = 47/282 (16%), Positives = 106/282 (37%), Gaps = 28/282 (9%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFD--------YRKITTKHIRS 121 ++ LI +++K + + ++ IS+ + + ++ + + +RS Sbjct: 6 IQELIIKWQKYLSLQKNYSNHTLISYNNDLKHFLEFMNYYNSDIVTMDYIKAADIRLMRS 65 Query: 122 GVESRK---HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 + RK SS + L++++ +K+ + + + S++ PK+ + ++E+ Sbjct: 66 WLAKRKCDNFVTSSIARGLSAIKNFYKFLEKTAELHNHVVFSIKSPKKSKLLPKALSEEE 125 Query: 179 -------MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231 ++++ + + + + SGLR S++ HLQN F K Sbjct: 126 VNISLDHIEEYGNSQWIEIRNKALLVLIYASGLRISEALSITKLHLQNLEFIKIMGKGSK 185 Query: 232 IITVELPDGFM----KLLAMTP---IGKETFFINNDKQKMNATQFSIWFKAKATKAGV-- 282 + + L P E F +K+ F+ G+ Sbjct: 186 ERVIPWLAIARNLITEYLEKLPYELKDDEPIFRGKQGKKLQPPVFNRELIKLKRFYGLPE 245 Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 + SAH R A+ + GA + G K++ ++YTK Sbjct: 246 HLSAHSFRHSFASHLLENGADLRSIQELLGHKSLSTTQSYTK 287 >gi|71064781|ref|YP_263508.1| tyrosine recombinase XerC subunit [Psychrobacter arcticus 273-4] gi|71037766|gb|AAZ18074.1| tyrosine recombinase XerC subunit [Psychrobacter arcticus 273-4] Length = 345 Score = 99.3 bits (246), Expect = 7e-19, Method: Composition-based stats. Identities = 36/236 (15%), Positives = 74/236 (31%), Gaps = 21/236 (8%) Query: 116 TKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175 +HI ++ K +S Q L+++R + W + ++ INP + + Sbjct: 89 AQHISQRLDEDKLALASVQQELSAIRHFYGWLIEEDLARINPTTGYQLKRSPRPLPSIAD 148 Query: 176 KEDMQQFKSFWSEGS--------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ 227 + + Q + + + FE L SGLR + + + ++ Sbjct: 149 VDLLTQLLDQEIPDTPEQARLWLRDKAMFELLYSSGLRVGELVALDIADVDLADLRVRVT 208 Query: 228 KTGTIIT-VELPDGFMKLLAM---------TPIGKETFFINNDKQKMNATQFSIWFKAKA 277 G V L + + F +++ K A Sbjct: 209 GKGNKTRLVPLGIKAADAIRRYLPHRNLWVEQMDTALFISEKLGTRLSTRAVQQRLKVAA 268 Query: 278 TKAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 T+AG+ ++ H +R A+ + G + + YT D +L Sbjct: 269 TRAGIAQNMYPHLLRHCFASHMLSGSGDLRAVQEMLGHSDISTTQIYTH-VDFAKL 323 >gi|296114852|ref|ZP_06833500.1| site-specific tyrosine recombinase XerC [Gluconacetobacter hansenii ATCC 23769] gi|295978558|gb|EFG85288.1| site-specific tyrosine recombinase XerC [Gluconacetobacter hansenii ATCC 23769] Length = 324 Score = 99.3 bits (246), Expect = 8e-19, Method: Composition-based stats. Identities = 52/306 (16%), Positives = 92/306 (30%), Gaps = 50/306 (16%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSGV--- 123 L W+ E R S R + D + G ++ +R+ + Sbjct: 11 LDWMADERRASPRTT---EAYRGDLHRFLDFLGGHLGGEVDVAALDALSLADLRAWLAFE 67 Query: 124 ESRKHTPSSAIQF-------------LTSMRVLFKWAVRQEYVAINPC-LSVERPKRKTE 169 + P + ++++R F++ R + NP + P+ K Sbjct: 68 HDQALRPRPGHRVTTRDRAARTRARRVSALRSFFRYLARH-HGVDNPAPALLAAPRVKKT 126 Query: 170 GIRPWTKED-------MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ---- 218 RP + ED + + + F L GLR S++ V L Sbjct: 127 LPRPLSHEDALEVPQGVGEIAHTPMARMRDGALFLLLYGCGLRISEALSLDVADLDRAMA 186 Query: 219 -----NNIFSIKTQKTGTIITVELPDGFMKLLA------MTPIGKETFFINNDKQKMNAT 267 + K G V L + L P+ F ++ A Sbjct: 187 LGGGADEGVLRIMGKGGKERMVPLLPVVGRALREWRRHHPAPVAGAPLFPGVRGGRLQAA 246 Query: 268 QFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 + AG+ + + H +R AT + GA + G ++ + YT Sbjct: 247 VAQRAMRTWRHMAGLPDHATPHALRHSFATHLMEGGADLRVIQELLGHASLSTTQRYT-L 305 Query: 326 ADRIRL 331 AD RL Sbjct: 306 ADESRL 311 >gi|164688499|ref|ZP_02212527.1| hypothetical protein CLOBAR_02144 [Clostridium bartlettii DSM 16795] gi|164602912|gb|EDQ96377.1| hypothetical protein CLOBAR_02144 [Clostridium bartlettii DSM 16795] Length = 302 Score = 99.3 bits (246), Expect = 8e-19, Method: Composition-based stats. Identities = 43/254 (16%), Positives = 90/254 (35%), Gaps = 21/254 (8%) Query: 89 VNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT--PSSAIQFLTSMRVLFKW 146 ++ + Q + D + + + + S + T S++ + + + + + Sbjct: 24 PKTKKDYLLKIIQFKKFLEGKDLLDVNKEDCQKFMCSIRETYAKSTSEKIYSYIHSFYSF 83 Query: 147 AVRQEYVAINPCLSVERPK--RKTEGIRPWTKEDMQQF-KSFWSEGSQPRLAFEFLLYSG 203 R +++ INP VE+P R + +++ + S + ++ RL FL +G Sbjct: 84 LQRNKHIEINPFSFVEKPIVSRDKGKDDVLSIQEINKLIDSLYKLNARDRLIMVFLTTTG 143 Query: 204 LRCSDSCRAGVQHL---QNNIFSIKTQKTGTIITVELPDGFMKLLA-----------MTP 249 ++ + L +++ + ++ K V+L KL+ + P Sbjct: 144 CMLNELVDVKWKDLIVDEDDNYYVRLGKGKKERVVKLHPYCFKLIEDYRYHSGLSEIILP 203 Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELM 308 F + + + AG+ N SA +R A IS GA E+ Sbjct: 204 TDDF-IFTTQKSNSITDRNVRVIVHKAFSLAGLENYSAKDLRHSYAAISLLLGADKEEIQ 262 Query: 309 ATYGWKTVDQAETY 322 GW A Y Sbjct: 263 KQLGWSDKYYAIRY 276 >gi|291534339|emb|CBL07451.1| Site-specific recombinase XerD [Roseburia intestinalis M50/1] Length = 317 Score = 99.3 bits (246), Expect = 8e-19, Method: Composition-based stats. Identities = 42/274 (15%), Positives = 100/274 (36%), Gaps = 18/274 (6%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK---H 128 K + R A +L + + S +R G + +T + S + +++ Sbjct: 3 KDIFESIRNEAEKRNLRERTIQLYCSDVSYFLRWIG-KNVSDLTLEDAESFLTAKRLEGR 61 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 +P + + ++++ L+K ++ + +V KR+ +++++ Sbjct: 62 SPETHNHYRSAIKFLYKKVLKTVWDDD----TVPAMKRERNLPAVLSRDEINAIIDATP- 116 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL------PDGFM 242 + + + SGLR S+ + +I ++T I D Sbjct: 117 NLKHKAIIATMYSSGLRVSEVVHLHYDDISRTNMTIHVRETKGRIDRYTILSQKNLDLLT 176 Query: 243 KLLAMTPIGKETFFINND-KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299 + K+ F ++ ++ + +FK A AG+N+ S+H R A+ + Sbjct: 177 EYWYKCGRPKDILFPSSWSGGYLDIASVNQFFKKSAKLAGINRHVSSHACRHSFASHLFE 236 Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 +G + + G + Y +++ LGI Sbjct: 237 SGTDIKYIQSLLGHVDPRSTDVYLHVSNKTLLGI 270 >gi|154492484|ref|ZP_02032110.1| hypothetical protein PARMER_02118 [Parabacteroides merdae ATCC 43184] gi|254881869|ref|ZP_05254579.1| phage integrase [Bacteroides sp. 4_3_47FAA] gi|154087709|gb|EDN86754.1| hypothetical protein PARMER_02118 [Parabacteroides merdae ATCC 43184] gi|254834662|gb|EET14971.1| phage integrase [Bacteroides sp. 4_3_47FAA] Length = 330 Score = 99.3 bits (246), Expect = 8e-19, Method: Composition-based stats. Identities = 38/259 (14%), Positives = 91/259 (35%), Gaps = 15/259 (5%) Query: 91 SRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE----SRKHTPSSAIQFLTSMRVLFKW 146 + + S Q+ +K TT+ IR+ + K + + F W Sbjct: 72 TIKYYGSTIRQLFKKMPKK-VTDYTTEDIRAYLAVFQRKNKSSRVTIDNIRRIFSSFFAW 130 Query: 147 AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRC 206 ++Y+ +P + + K T+ + E+++Q + +E + + L +G+R Sbjct: 131 LEEEDYIIKSPVRRIHKVKTGTQVKEVLSDENIEQLRDSCTE-IRDLAIIDILASTGMRV 189 Query: 207 SDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDG----FMKLLAMTPIGKETFFINNDK 261 + + + + N I K V + LA + F++ K Sbjct: 190 GELVKLNREDINFNERECIVFGKGNKERIVYFNARAKIHLQQYLASRKDRNKALFVSLAK 249 Query: 262 --QKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318 +++ + + A + + H R+ AT++ D G ++ G +D Sbjct: 250 PHKRLGISGVETRLRKLGRSAKIVRVHPHKFRRTLATMAIDKGMPVEQVQRLLGHVKIDT 309 Query: 319 AETYTKGADRIRLGIKNSR 337 Y ++ + + + + Sbjct: 310 TMHYA-MVNQSNVKLSHRK 327 >gi|134288747|ref|YP_001111041.1| gp10, site-specific recombinase, phage integrase family [Burkholderia phage phiE202] gi|134131960|gb|ABO60708.1| gp10, site-specific recombinase, phage integrase family [Burkholderia phage phiE202] Length = 393 Score = 99.3 bits (246), Expect = 8e-19, Method: Composition-based stats. Identities = 43/320 (13%), Positives = 100/320 (31%), Gaps = 23/320 (7%) Query: 18 HGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISE 77 ++ G RIR ++A S R+ R T + Sbjct: 8 KNGPWWFDLSIDGSRIRQSSGTSDRRAAEELAAKVASDYWRQKKLGERP-TVTWDAAVVH 66 Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH--------T 129 + K + S + + + + + R I + I++ +E++ Sbjct: 67 WLK----QNQHQRSLETTKQRLRWLTDQLKGENVRNIDRERIQALIETKAAEKYRGSPVA 122 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 ++ + + ++ V+ + ++ P + + + + + T+ Q+ Sbjct: 123 GATVNRHMAALSVILHHCHAEGWIDAVP--PIRKLRENSARLTWLTRAQAQRLLEELP-- 178 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQKTGTIITVELPDGFMKLL 245 + R F L +GLR S+ + K G +I+V L + + +L Sbjct: 179 THLRQMARFALATGLRESNVRLLEWAQVDRERALAWIHADQAKAGKVISVPLNEDALGVL 238 Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATA 304 + + + ++ ++ +AG+ H +R A+ AG Sbjct: 239 REQQGQHKRYVFVYKGAPIGRI-YNHAWQKACVRAGLSGLRFHDLRHTWASWHVQAGTPL 297 Query: 305 HELMATYGWKTVDQAETYTK 324 L GW + Y Sbjct: 298 PILQQLGGWASYQMVLRYAH 317 >gi|124268171|ref|YP_001022175.1| putative site specific integrase [Methylibium petroleiphilum PM1] gi|124260946|gb|ABM95940.1| putative site specific integrase [Methylibium petroleiphilum PM1] Length = 318 Score = 99.3 bits (246), Expect = 8e-19, Method: Composition-based stats. Identities = 47/271 (17%), Positives = 90/271 (33%), Gaps = 28/271 (10%) Query: 89 VNSRISFES---YFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFK 145 N+R ++ +F + G D R++ H+ VE S Q L ++R LF Sbjct: 40 PNTRKAYARAGQHFADWCARFGIGDVRQVQPVHVALYVEQLDLAAPSVKQRLAALRALFD 99 Query: 146 WAVRQEYVAINPCLSVERPK--RKTEGIRPWTKED----MQQFKSFWSEGSQPRLAFEFL 199 W V + + INP +V P+ KT + + ++ + G + R + Sbjct: 100 WLVVGQVMPINPAAAVRGPRYSVKTGKTPVLSASEVRDLVESIDAESLVGMRDRALIGTM 159 Query: 200 LYSGLRCSDSCRAGVQHL--QNNIFSIKT-QKTGTIITVELPDGFMKLLA-------MTP 249 +Y+ R R V+ + Q ++ +K G + + L + Sbjct: 160 VYTFARVGAVTRLRVEDVYTQRRRLWVRLDEKGGKRHEMPCHHRLEEWLYDYLEAAGIAD 219 Query: 250 IGKETFFINND-------KQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADA 300 F + + M+ + +A AG+ + H R T Sbjct: 220 DPGGPLFRSARAATDTLTSRPMSQADVYRMIRRRAEAAGIATAIGCHSFRATGITEYLLN 279 Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRL 331 G ++ Y + D+I+L Sbjct: 280 GGKLEIAQQMANHESSRTTGLYDRRGDQIKL 310 >gi|309792261|ref|ZP_07686733.1| integrase domain-containing protein [Oscillochloris trichoides DG6] gi|308225802|gb|EFO79558.1| integrase domain-containing protein [Oscillochloris trichoides DG6] Length = 301 Score = 99.3 bits (246), Expect = 8e-19, Method: Composition-based stats. Identities = 51/279 (18%), Positives = 93/279 (33%), Gaps = 32/279 (11%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLF 144 L+ N+ S+ D ITT I+S ++SR P + + + S+ F Sbjct: 12 QGLSGNTITSYRCDLRTAAGVV-DKPLETITTLDIQSFLDSRNEQPGTTNRRIASLGRFF 70 Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPW-TKEDMQQFKSFWSEGSQP-RLAFEFLLYS 202 +WAV + Y NP + +P ++ + + + + SQP RL F L Sbjct: 71 RWAVARGYCLYNPLEQIAGRYHTEHRPQPIVSEAERRALDTAIAACSQPYRLIFTLLREI 130 Query: 203 GLRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVELPDGF-----------MKLLAM 247 G+R + V + + ++ K+G V L M+ L Sbjct: 131 GVRTDEVLNLNVGDVILETGREVLLVQDTKSGNKRMVALTPDAMPRSLRGLRSWMRDLGP 190 Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV----------NKSAHGVRKFSATIS 297 P F ++ ++ + + A + + H +R +A Sbjct: 191 NPAPDAPLFCSSRGKRASYDTLHRRWVQVCRAAHLIDLVEGKEQPRYTLHHLRHTAAAEL 250 Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336 A + G + Y AD +R G N+ Sbjct: 251 -IAFYPEQVVRRILGHRDPRSTRRY---ADIVRKGAHNA 285 >gi|293372459|ref|ZP_06618843.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] gi|292632642|gb|EFF51236.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] Length = 196 Score = 99.3 bits (246), Expect = 8e-19, Method: Composition-based stats. Identities = 34/166 (20%), Positives = 56/166 (33%), Gaps = 18/166 (10%) Query: 177 EDMQQFKSFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232 E++ + S EG + R E L GLR S+ + L + IK + G+ Sbjct: 2 EEIDRIISAVDRSKAEGQRNRAILETLYSCGLRVSELITLKLSDLYFDEGFIKVEGKGSK 61 Query: 233 IT-VELPDGFMKLLAMTPIG-----------KETFFINNDKQKMNATQFSIWFKAKATKA 280 V + + + + F + ++ K A KA Sbjct: 62 QRLVPISPRAINEIKLYIPDRNQIEVKKGHEDFVFVSQRRGKGLSRIMIFHMIKELAEKA 121 Query: 281 GVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 G+ K S H R AT + GA + G +++ E YT Sbjct: 122 GITKNISPHTFRHSFATHLLEGGANLRAIQCMLGHESIATTEIYTH 167 >gi|126437019|ref|YP_001072710.1| phage integrase family protein [Mycobacterium sp. JLS] gi|126236819|gb|ABO00220.1| phage integrase family protein [Mycobacterium sp. JLS] Length = 424 Score = 99.3 bits (246), Expect = 8e-19, Method: Composition-based stats. Identities = 59/334 (17%), Positives = 113/334 (33%), Gaps = 39/334 (11%) Query: 19 GKI-IYYFRKGHGR-RIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76 GK+ + R R AY++ LT + EY++ PRK T + Sbjct: 55 GKVSRWRVRWVDASGAERTKSFQRKPDAQAYLNGLTADVQRGEYVD-PRKSAETFGSVAE 113 Query: 77 EYRKSAHWGSLAVNSRISFESYFDQI-IRKSGDFDYRKITTKHIRSGVES------RKHT 129 ++ + + + S D + + K ++I + + + + ++ T Sbjct: 114 QWFATK--QHRKPKTVAGYRSLLDTVVLPKWESVQLKRINYESYSTWLGALSVDGGQRGT 171 Query: 130 PSSAIQFLTS---MRVLFKWAVRQEYVAINPCLSVER----PKRKTEGIRPWTKEDMQQF 182 SA + + + + K+A R VA N ++R P++ R T ++ Sbjct: 172 GLSASRITQAHQLVGAVLKYAQRTGKVAKNVAFEIKRDEDLPEQGERERRYLTHAELLML 231 Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--------------TQK 228 L Y GLR ++ +H+ + + +++ T K Sbjct: 232 AKAADRFETLTLVLG---YCGLRFGEAVALRRRHVGDRMLTVRSSATAVTGKGIVESTTK 288 Query: 229 TGTIITVELPDGF-MKLLAMTPIGKETFFINNDKQKMNATQFSIW-FKAKATKAGVNK-S 285 T V +P+ KL A P + K W F G++ Sbjct: 289 TKRDRHVPVPEPVWKKLKAELPADPNALVFPSRKGGFLPLGEYRWAFDNACADIGIDGLV 348 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQA 319 HG+R +A+++ AGA + G T Sbjct: 349 PHGLRHTTASLAISAGANVKVVQRLLGHATAAMT 382 >gi|91204992|ref|YP_537347.1| site-specific tyrosine recombinase XerC [Rickettsia bellii RML369-C] gi|122990944|sp|Q1RK56|XERC_RICBR RecName: Full=Tyrosine recombinase xerC gi|91068536|gb|ABE04258.1| Tyrosine recombinase XerC [Rickettsia bellii RML369-C] Length = 305 Score = 99.3 bits (246), Expect = 8e-19, Method: Composition-based stats. Identities = 47/282 (16%), Positives = 105/282 (37%), Gaps = 28/282 (9%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFD--------YRKITTKHIRS 121 ++ LI +++K + + ++ IS+ + + ++ + + +RS Sbjct: 6 IQELIIKWQKYLSLQKNYSNHTLISYNNDLKHFLEFMNYYNSDIVTMDYIKAADIRLMRS 65 Query: 122 GVESRK---HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 + RK SS + L++++ +K+ + + + S++ PK+ + ++E+ Sbjct: 66 WLAKRKCDNFVTSSIARGLSAIKNFYKFLEKTAELHNHVVFSIKSPKKSKLLPKALSEEE 125 Query: 179 -------MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231 ++++ + + + + SGLR S++ HLQN F K Sbjct: 126 VNISLDHIEEYGNSQWIEIRNKALLVLIYASGLRISEALSITKLHLQNLEFIKIMGKGSK 185 Query: 232 IITVELPDGFM----KLLAMTP---IGKETFFINNDKQKMNATQFSIWFKAKATKAGVN- 283 + + L P E F +K+ F+ G+ Sbjct: 186 ERVIPWLAIARNLITEYLEKLPYELKDDEPIFRGKQGKKLQPPVFNRELIKLKRFYGLPE 245 Query: 284 -KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 SAH R A+ + GA + G K++ ++YTK Sbjct: 246 YLSAHSFRHSFASHLLENGADLRSIQELLGHKSLSTTQSYTK 287 >gi|284993087|ref|YP_003411641.1| integrase family protein [Geodermatophilus obscurus DSM 43160] gi|284066332|gb|ADB77270.1| integrase family protein [Geodermatophilus obscurus DSM 43160] Length = 404 Score = 99.3 bits (246), Expect = 8e-19, Method: Composition-based stats. Identities = 45/320 (14%), Positives = 99/320 (30%), Gaps = 38/320 (11%) Query: 53 GSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDY 111 R T+ ++ + + G + S+ ++ ++ I+ G Sbjct: 27 ADVANRTAQGVRVDDRETVASFLARWLQ-VKAGEAKPTTVRSYRAHVERVIVPAIGHVPI 85 Query: 112 RKITTKHIRSGV--ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169 ++ +H+ + + P + + ++R + V+ + N +V P Sbjct: 86 EELRAEHVEQLLVDAANGRGPVTVRRIHATLRSALSYGVKTRRLPFNVASNVTPPNGIRP 145 Query: 170 GIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ----------- 218 ++PW+ ++ F E + FE + GLR ++ L Sbjct: 146 EVQPWSAAELAAFL-RHVETDRLGPLFEVIAACGLRRGEALGLRWSDLDLANRTARIRQT 204 Query: 219 ----NNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIG--------------KETFFINN 259 T KT + TV L + ++ L +G + F Sbjct: 205 IVDVGGRLQFSTPKTRSSEATVPLTERAVQALLQVRLGQDLDRQGWGGAYHAHDLVFARE 264 Query: 260 DKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVD- 317 + + + F A AG+ H +R +A++ AG + ++ Sbjct: 265 NGAPLRPEYATRRFVALTKAAGLRWVRLHDLRHGAASLMLAAGVPMAIVSKVLRHSSIGI 324 Query: 318 QAETYTK-GADRIRLGIKNS 336 +TY D +R Sbjct: 325 TVDTYGHLSEDTVRTASDAM 344 >gi|15605600|ref|NP_220386.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis D/UW-3/CX] gi|255311708|ref|ZP_05354278.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis 6276] gi|255318009|ref|ZP_05359255.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis 6276s] gi|34222769|sp|O84872|XERD_CHLTR RecName: Full=Tyrosine recombinase xerD gi|3329338|gb|AAC68462.1| Integrase/recombinase [Chlamydia trachomatis D/UW-3/CX] gi|296436423|gb|ADH18597.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis G/9768] gi|296437354|gb|ADH19524.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis G/11222] gi|296438282|gb|ADH20443.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis G/11074] gi|297140783|gb|ADH97541.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis G/9301] Length = 300 Score = 99.3 bits (246), Expect = 8e-19, Method: Composition-based stats. Identities = 32/224 (14%), Positives = 70/224 (31%), Gaps = 23/224 (10%) Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 K + ++ + L +++V F + + + P +E PK + E++ Sbjct: 65 HKAKESETTLARRLIALKVFFHFLKDAKMLDQQPF--IEHPKIWKRLPSILSTEEVNSLL 122 Query: 184 SFWS--------EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235 S+ +G+R S+ C + + ++ + T K V Sbjct: 123 DQPLNIPNLDTHIASRDAAILYTFYATGIRVSELCDLCIGDISDDFIRV-TGKGRKTRLV 181 Query: 236 ELPDGFMKLLAM-----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284 + + + +E F++ +K++ + A + Sbjct: 182 PISIKAKQAIDAYLSSFRDELQKKNPSEEHVFLSIRGKKLDRSCVWKRITFYAKLVTTKR 241 Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 S H +R AT + A + G + E YT A Sbjct: 242 ISPHSLRHAFATHLLNNHADLRIIQEMLGHSRISSTEIYTHVAS 285 >gi|253566956|ref|ZP_04844408.1| integrase [Bacteroides sp. 3_2_5] gi|251944519|gb|EES85008.1| integrase [Bacteroides sp. 3_2_5] Length = 392 Score = 99.3 bits (246), Expect = 8e-19, Method: Composition-based stats. Identities = 55/272 (20%), Positives = 96/272 (35%), Gaps = 26/272 (9%) Query: 84 WGSLAVNSRISFESYFDQI-IRKSGDFDYRKITTKHIRSGVESRKHTPSSA--IQFLTSM 140 + + A +E F G + ++T + +E + TP + + L + Sbjct: 120 FKTYASKKNSRYEQAFLHFDRFVGGKCTFGEVTVELCNKFLEYLRSTPQAIHQKRKLHTN 179 Query: 141 RVLFKW---------AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191 + W A R + NPC +ER + + E++ + E Sbjct: 180 TIASYWSAFLGTLHTAHRDRKIKENPCPYLERVQTIPSDKVGLSAEELARVAETPCEIPV 239 Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQ---NNIFSIKT--QKTGTIITVELPDGFMKLLA 246 + AF F +GLR SD + +Q + I T QKT II + + ++L+ Sbjct: 240 LKTAFLFSCLTGLRKSDVKTFSWEMIQPEADGTLYITTRMQKTKQIIYNPIGEEALQLID 299 Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATA 304 +E K M F W K AG+ K + HG R ++ DAG + Sbjct: 300 G---SREGLVFPGFKDSMTQAPFKKWIK----AAGITKKLTFHGARHTFCSLQLDAGTDS 352 Query: 305 HELMATYGWKTVDQAETYTKGADRIRLGIKNS 336 + G K + + Y + + N Sbjct: 353 RTVQELVGHKNLATTQRYLDSVNSRKKEAANR 384 >gi|89053521|ref|YP_508972.1| site-specific tyrosine recombinase XerC [Jannaschia sp. CCS1] gi|88863070|gb|ABD53947.1| phage integrase [Jannaschia sp. CCS1] Length = 307 Score = 99.3 bits (246), Expect = 8e-19, Method: Composition-based stats. Identities = 43/251 (17%), Positives = 79/251 (31%), Gaps = 20/251 (7%) Query: 100 DQIIRKSGDFDYRKITTKHIRSGVESRKHT---PSSAIQFLTSMRVLFKWAVRQEYVAIN 156 D + G R + T+ +R+ + S++ S + L++++ + W ++ Sbjct: 47 DHLGGSPGPAALRTLQTRDLRAWMSSQRARDVGARSLARRLSAVKAFYNWWAERDGFDAT 106 Query: 157 PCLSVERPKRKTEGIRPWTK----EDMQQFKSFWSEG---SQPRLAFEFLLYSGLRCSDS 209 LS+ PK RP T+ + + ++ L GLR S++ Sbjct: 107 AVLSMRAPKHTRRLPRPLTEVGAKDMIAGLADQDDRDWVQARDMAVVTLLYGCGLRISEA 166 Query: 210 CRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTP-------IGKETFFINNDKQ 262 L T K G V + A F Sbjct: 167 LGLTADLLPLPGILRITGKGGKEREVPVLPAAQDACARYAQLCPHDLAPGTPLFRAIRGG 226 Query: 263 KMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAE 320 + + + + G+ +A H +R AT DAG + G ++ + Sbjct: 227 ALGPRAVAKVMEKTRLQLGLPATATPHAMRHSFATHLLDAGGDLRAIQELLGHASLSTTQ 286 Query: 321 TYTKGADRIRL 331 YT D RL Sbjct: 287 AYT-AVDTARL 296 >gi|297572206|ref|YP_003697980.1| integrase family protein [Arcanobacterium haemolyticum DSM 20595] gi|296932553|gb|ADH93361.1| integrase family protein [Arcanobacterium haemolyticum DSM 20595] Length = 260 Score = 99.3 bits (246), Expect = 8e-19, Method: Composition-based stats. Identities = 37/251 (14%), Positives = 74/251 (29%), Gaps = 5/251 (1%) Query: 82 AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMR 141 +L+ + + + T + I S + + + T ++ Sbjct: 1 MRAQALSDLTIHERIRVSNCLCEYVDATPVTITTDQIIE--WVSLLPSAVTKWTYFTHIK 58 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY 201 LF W NP L ++ P+R RP + E ++ + + R Sbjct: 59 ALFTWLEITRRRTDNPLLGLKAPRRPKYYPRPISLEVIEHVLNQ-RLYRKTRCMILLAFN 117 Query: 202 SGLRCSDSCRAGVQHLQNNIFSIKTQ-KTGTIITVELPDGFMKLLAMTPIGKETFFINND 260 GLR + C+ Q + + K G + + P F N Sbjct: 118 CGLRVGEICKVRGQDYDRQAGLLTVEGKGGKRSIIPVNSALQPFFNTMPAHGWWFPCRNG 177 Query: 261 KQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320 + + + V+ +H +R AT A + +++ Sbjct: 178 GHVRSRSVGDTIVRTFRRYE-VHMVSHQLRHTFATELLAADVDLRIVQLLMRHESIQTTA 236 Query: 321 TYTKGADRIRL 331 YT+ A +L Sbjct: 237 LYTRVARAQQL 247 >gi|254303856|ref|ZP_04971214.1| site-specific recombinase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148324048|gb|EDK89298.1| site-specific recombinase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 328 Score = 99.3 bits (246), Expect = 8e-19, Method: Composition-based stats. Identities = 42/295 (14%), Positives = 95/295 (32%), Gaps = 44/295 (14%) Query: 88 AVNSRISFESYFDQIIRKS--GDFDY---------RKITTKHIRSGV----ESRKHTPSS 132 + + + + + G+ D+ + I + + + + E RK +S Sbjct: 33 SEKTVKDYMFHLKDFLHFVYEGENDFSISEVIPLMQDIEKEDVEAYIVHLFEDRKLKKTS 92 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW--TKEDMQQFKSFWSEGS 190 L++++ L+K NP ++ K + +D+++ + S Sbjct: 93 VNTILSALKSLYKELESNGL--KNPVKYIKLFKVNRNIENVLKVSIDDIRKIIGLYKIDS 150 Query: 191 QPR----LAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVELPDGFM 242 + + L Y+G+R + +H F + K+G + + + Sbjct: 151 EKKYRNITILYTLFYTGMRSKELLTLQFKHYLKREDEYFFKLVETKSGKDVYKPIHKSLV 210 Query: 243 K-------------LLAMTPIGKETFFINN--DKQKMNATQFSIWFKAKATKAGVNKSAH 287 K L + + + F + D ++ + + G + S H Sbjct: 211 KKLEEYKKYLMSMYSLDIKDLDEHYIFSTSILDNSPLSYRSLNAIIQDMGKLIGKDISPH 270 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342 +R AT + +GA E+ G E Y R L K ++ + Sbjct: 271 NIRHAIATELSLSGADILEIRDFLGHSDTKVTEVYINA--RSILEKKVLEKLPEI 323 >gi|331086445|ref|ZP_08335525.1| hypothetical protein HMPREF0987_01828 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330406211|gb|EGG85734.1| hypothetical protein HMPREF0987_01828 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 353 Score = 99.3 bits (246), Expect = 8e-19, Method: Composition-based stats. Identities = 51/335 (15%), Positives = 101/335 (30%), Gaps = 44/335 (13%) Query: 16 TRHGKII----YY-----FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66 TR GK YY R +R + + + Sbjct: 4 TRDGKTWRSQFYYEDWQGIRHKKNKRGFKTKAEAEEWERNFRQ------------QQRKD 51 Query: 67 KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVE- 124 + + Y L ++ + FD ++ +I T IR+ Sbjct: 52 LDINFENFVEIYFADVE-NRLRESTIKNKRYVFDLKVTPYFKKKKMCEIKTSDIRAWQNE 110 Query: 125 --SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP-KRKTEGIRPWTKEDMQQ 181 + + P+ + LF +AVR + NPC K K + + WTK++ +Q Sbjct: 111 LIKQGYAPTYLKSINNQLAALFNYAVRYYDLKDNPCRKAGSIGKSKADDMEFWTKQEFKQ 170 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ---------------NNIFSIKT 226 F + + R+AF L ++G+R + + + + I Sbjct: 171 FLPSMDKKPEARMAFMLLYWTGMRIGELLALTYEDIDLEKRIISISKSYQRLDGKDVITP 230 Query: 227 QKT-GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284 KT + + +P + L N + + + GV + Sbjct: 231 PKTPKSNRKITIPPFLAEELKEYCSHLYGIMSNERMFRFTKSYMEHEIVRGIKETGVKRI 290 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319 H +R A++ + G + G + ++ Sbjct: 291 RIHDLRHSHASLLVELGFQPLAIAERLGHEKIETT 325 >gi|225377375|ref|ZP_03754596.1| hypothetical protein ROSEINA2194_03023 [Roseburia inulinivorans DSM 16841] gi|225210776|gb|EEG93130.1| hypothetical protein ROSEINA2194_03023 [Roseburia inulinivorans DSM 16841] Length = 404 Score = 99.3 bits (246), Expect = 8e-19, Method: Composition-based stats. Identities = 44/278 (15%), Positives = 93/278 (33%), Gaps = 24/278 (8%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR---KSGDFDYRKITTKHIRSGVESRK 127 L L SE+ K+ + ++ + G D++ +T I + + S Sbjct: 112 LHDLFSEFLKAEEHRHFSESTMKQLRGRLMRFHDYLYDIGIRDFKSVTGSIINTYILSLA 171 Query: 128 HTPSSAIQ-FLTSMRVLFKWAVRQEYVAINPCLSVERPK--RKTEGIRPWTKEDMQQFKS 184 ++ + L +R L + ++ + K R+ + +T ++++ + Sbjct: 172 RYSTTYVSESLREIRRLLTFGYENGFIDTPLSDFIPHVKNIRQQKIPSTFTDTEIEKILN 231 Query: 185 FW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELP 238 G + F G+R SD ++ + + S QKTG +++ LP Sbjct: 232 SVDRSNPIGKRNYAIFLIAARLGIRSSDIRTLTFSNINWDDKLISFCQQKTGHALSLPLP 291 Query: 239 DGFM-KLLAMTPIGKE-----TFFINNDKQKMNATQFSIWFKAKATKAGVNKSA------ 286 D ++ G+ F+++ + AG+N A Sbjct: 292 DDVGWAIIDYLKNGRPETNVKNIFVSHMYPYGELHSLGNVIPRQMRTAGINTPANKRTGM 351 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H R AT + + + T G + E Y + Sbjct: 352 HAFRHGLATRMLENDVSLPVISQTLGHADISSTEVYLR 389 >gi|213019194|ref|ZP_03335001.1| site-specific recombinase, phage integrase family [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|212995303|gb|EEB55944.1| site-specific recombinase, phage integrase family [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 278 Score = 99.3 bits (246), Expect = 8e-19, Method: Composition-based stats. Identities = 39/256 (15%), Positives = 80/256 (31%), Gaps = 23/256 (8%) Query: 90 NSRISFESYFD-QIIRKSGDFDYRKITTKHIRSG---VESRKHTPSSAIQFLTSMRVLFK 145 S+ + I + K++ +RS +R S + L+ +R FK Sbjct: 2 RDLKDLISFLNTHIGEEVNVGSLEKLSIPELRSWFTSRYARGVNARSNTRALSVIRNFFK 61 Query: 146 WAVRQEYVAINPCL-SVERPKRKTEGIRPWTKEDMQQFKSFWSEGS--------QPRLAF 196 + ++ Y N + S+ RP ++ + + +++ + Sbjct: 62 Y-IKNNYEINNEAVFSLSRPIQRRTLPKALSISNIETLLKEMKLPDLGEPWVVKREIAIV 120 Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF- 255 L +GLR +++ V + N I T K V + K + F Sbjct: 121 VLLYGTGLRITEALNLKVSDISNESL-IVTGKGDKQRQVFILPVVKKCIQKYIKACPHFD 179 Query: 256 -----FINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELM 308 F+ +K+ T + + + S H R AT + Sbjct: 180 EAGHLFVGVRGKKLGRTYVANRLQKIRRFLNLPEILSPHAFRHSFATHLLQEDIDIRSIQ 239 Query: 309 ATYGWKTVDQAETYTK 324 G +++ + YT Sbjct: 240 QLLGHSSLETTQVYTH 255 >gi|289525911|emb|CBJ15393.1| integrase/recombinase [Chlamydia trachomatis Sweden2] gi|296435499|gb|ADH17677.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis E/150] Length = 300 Score = 99.0 bits (245), Expect = 8e-19, Method: Composition-based stats. Identities = 31/224 (13%), Positives = 71/224 (31%), Gaps = 23/224 (10%) Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 K + ++ + L +++V F + + + P +E PK + E++ Sbjct: 65 HKAKESETTLARRLIALKVFFHFLKDAKMLDQQPF--IEHPKIWKRLPSILSTEEVNSLL 122 Query: 184 SFWS--------EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235 S+ +G+R S+ C + + ++ + + T + V Sbjct: 123 DQPLNIPNLDTHIASRDAAILYTFYATGIRVSELCDLCIGDISDDFIRVTGKGRKTRL-V 181 Query: 236 ELPDGFMKLLAM-----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284 + + + +E F++ +K++ + A + Sbjct: 182 PISIKAKQAIDAYLSSFRDELQKKNPSEEHVFLSIRGKKLDRSCIWKRITFYAKLVTTKR 241 Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 S H +R AT + A + G + E YT A Sbjct: 242 ISPHSLRHAFATHLLNNHADLRIIQEMLGHSRISSTEIYTHVAS 285 >gi|92115230|ref|YP_575158.1| phage integrase [Chromohalobacter salexigens DSM 3043] gi|123083908|sp|Q1QSU9|XERC_CHRSD RecName: Full=Tyrosine recombinase xerC gi|91798320|gb|ABE60459.1| phage integrase [Chromohalobacter salexigens DSM 3043] Length = 298 Score = 99.0 bits (245), Expect = 8e-19, Method: Composition-based stats. Identities = 36/271 (13%), Positives = 84/271 (30%), Gaps = 20/271 (7%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIRSGVES---R 126 + + S G + + ++ + + SG D+ + +R + + R Sbjct: 3 AAVERFLHSLS-GHASPATLDAYRRDLTALARFLEASGIDDWAALDVAQVRRFMGAERTR 61 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 P S + ++ VR + NP + P++ RP + + +F Sbjct: 62 GLAPRSLARRRAALSRFADHLVRSGILDHNPVALTQTPRQPRHLPRPVDVDQLARFLDTP 121 Query: 187 SEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI-------KTQKTGTIITV 235 +G+ + + E GLR ++ V L + + G Sbjct: 122 HDGTPLAVRDQAMLELFYSCGLRLAELTALDVTDLDARRLRVVGKGNKPRQMPIGRRAQA 181 Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFS 293 L D + + + F+ ++ A + G+ + H +R Sbjct: 182 ALADWYRLRGQLAGHDEPALFVGQRGARLGHRAVQKRLAQLARERGLAEHLHPHRLRHSF 241 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTK 324 A+ ++ + G + + YT+ Sbjct: 242 ASHLLESSQDLRAVQELLGHANLSTTQVYTR 272 >gi|294141273|ref|YP_003557251.1| site-specific recombinase, phage integrase family [Shewanella violacea DSS12] gi|294141423|ref|YP_003557401.1| site-specific recombinase, phage integrase family [Shewanella violacea DSS12] gi|293327742|dbj|BAJ02473.1| site-specific recombinase, phage integrase family [Shewanella violacea DSS12] gi|293327892|dbj|BAJ02623.1| site-specific recombinase, phage integrase family [Shewanella violacea DSS12] Length = 296 Score = 99.0 bits (245), Expect = 9e-19, Method: Composition-based stats. Identities = 41/284 (14%), Positives = 93/284 (32%), Gaps = 19/284 (6%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KH 128 +L ++ + + ++ +I D +TT ++ S H Sbjct: 9 FDFLYEQHLTNLTLQGKRPATIDAYSRAVRRIAAFF-DCCPDNLTTDDLKRYFASLIDSH 67 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 + S+ ++ +++ + + +N + +P + T ++ S + Sbjct: 68 SWSTVKLDRNGLQFFYRYVLNHSWEWLN----IVKPPQVQRLPDILTPCEVAIVISLTRQ 123 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF--SIKTQKTGTIITVELPDG-FMKLL 245 + ++ F L GLR ++ V + + I I+ K G V LP L Sbjct: 124 -LRYQVCFLTLYSMGLRLGEAISLRVGDIDSQIMQVHIRNAKGGKDRLVPLPKRTLQALR 182 Query: 246 AMTPIGK--ETFFINNDKQKMN---ATQFSIWFKAKATKAGVNKS--AHGVRKFSATISA 298 F D Q + K + ++KS H +R AT Sbjct: 183 YYWKTHHHPRYLFPGKDSQPDSLIDKGGIQKALKRVIGECNIHKSISPHNLRHSYATHLL 242 Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRIRLG-IKNSRRISS 341 + G + + G +++ YT+ R ++ +++ Sbjct: 243 EQGLDLRSVQSLLGHNSLNTTARYTRLTQITRKNTVEAINQLAD 286 >gi|177654275|ref|ZP_02936204.1| prophage LambdaBa02, site-specific recombinase, phage integrase family [Bacillus anthracis str. A0174] gi|172080765|gb|EDT65846.1| prophage LambdaBa02, site-specific recombinase, phage integrase family [Bacillus anthracis str. A0174] Length = 376 Score = 99.0 bits (245), Expect = 9e-19, Method: Composition-based stats. Identities = 43/293 (14%), Positives = 95/293 (32%), Gaps = 28/293 (9%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHT 129 L+ + + S ++ ++ +++ + G+ I + + + Sbjct: 63 FSQLVEIWTQEKE-SSCRPSTLYQYKRILRSRVMPEFGEKRLSDIKPLSVHNFHQKLLKE 121 Query: 130 PSSAIQFLTS---MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + + ++ + V E + NP +RPK K + WT E+ +F + Sbjct: 122 GLTTKYISSVDVMLKQILDKGVELEMINSNPAKKAKRPKVKKKAQASWTVEEAMKFMEYA 181 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT------------ 234 +AF L++G+R + + + I Q+T T++ Sbjct: 182 KIQGSYYIAFVLALHTGMRIGEVLALQWKDINFESKVIHVQRTLTLVDGKYELGETKTEA 241 Query: 235 ----VELPDGFMKLLAMTPIGK-----ETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284 + + M+ K + +K+ ++ KA V Sbjct: 242 SNRMIPMTQELMREPLEYQSHKKDNSFDLLICTRNKKIVHPYTIRYQMKALCEAIDVPYI 301 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNS 336 H +R+ TI D+GA A + G V YT + ++ + Sbjct: 302 RFHDIRRTFTTILIDSGANAKVVSKLLGHTNVSTTLNIYTDVYEERQIEVTEM 354 >gi|154490810|ref|ZP_02030751.1| hypothetical protein PARMER_00727 [Parabacteroides merdae ATCC 43184] gi|154088558|gb|EDN87602.1| hypothetical protein PARMER_00727 [Parabacteroides merdae ATCC 43184] Length = 333 Score = 99.0 bits (245), Expect = 9e-19, Method: Composition-based stats. Identities = 45/228 (19%), Positives = 82/228 (35%), Gaps = 14/228 (6%) Query: 110 DYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169 +R + + + +SA + + R + K A R +Y+ NP +E+ + + Sbjct: 103 RFRDYLLHARQLKHTDKMVSRNSAASYFSLFRGVLKLAYRDKYLRENPNDFLEKIESRDI 162 Query: 170 GIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL-----QNNIFSI 224 T+++++ S + R A F +GLR SD ++L + + Sbjct: 163 HKEFLTQDELKTLASTPCDIPVLRNASLFSCLTGLRISDILNLKWENLCTAPDLGHCIRL 222 Query: 225 KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284 +TQKT T + + L GK ++ M W K AG+ K Sbjct: 223 RTQKTQTEALLPISYEAYALCGEPGTGK---VFKELRRCMTGYPLKAWIKK----AGIQK 275 Query: 285 --SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 + H R AT+ AG + K V + Y + + Sbjct: 276 HITFHCFRHTYATLQIAAGTDIFTVSKMLTHKNVATTQIYAELVSEKK 323 >gi|54308529|ref|YP_129549.1| putative integrase [Photobacterium profundum SS9] gi|46912958|emb|CAG19747.1| putative integrase [Photobacterium profundum SS9] Length = 295 Score = 99.0 bits (245), Expect = 9e-19, Method: Composition-based stats. Identities = 40/271 (14%), Positives = 86/271 (31%), Gaps = 21/271 (7%) Query: 88 AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKHTPSSAIQFLTSMRVLFK 145 + ++ +I + +TT ++ S + H+ S+ ++ ++ Sbjct: 26 RPATIDAYSRAVRRISQFFDRCP-DAMTTADLKQYFASLIQTHSWSTVKLDRNGLQFFYR 84 Query: 146 WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS-GL 204 + +E+ ++ + +P + + T + + S + F LY+ GL Sbjct: 85 HTLEKEWQWLD----IVKPPQSKKLPDIITAQQVALLISMTK--QKRYQIFFLTLYTMGL 138 Query: 205 RCSDSCRAGVQHLQNNIF--SIKTQKTGTIITVELPDGFMKLLAM--TPIGKETFFINND 260 R + V + + I+ K G V +P + L Sbjct: 139 RLGEGLSLTVHDIDQHTMQVHIRDGKGGKDRLVPVPQRTLNALRAHWLTHRHPRLIFPGK 198 Query: 261 K----QKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWK 314 M+ K G+NK S H +R AT + G L G Sbjct: 199 GCNTDNPMDRGGVQKAMKLVLKDCGINKPISPHSLRHCFATHLLEQGLDLRSLQILLGHA 258 Query: 315 TVDQAETYTKGAD-RIRLGIKNSRRISSVVD 344 +++ YT+ + R R++ + Sbjct: 259 SLNTTARYTRMTQIKQRDAALAINRLADALT 289 >gi|41179218|ref|NP_958556.1| putative integrase [Lactobacillus prophage Lj965] gi|42518375|ref|NP_964305.1| Lj965 prophage integrase [Lactobacillus johnsonii NCC 533] gi|38731488|gb|AAR27434.1| putative integrase [Lactobacillus prophage Lj965] gi|41582660|gb|AAS08271.1| Lj965 prophage integrase [Lactobacillus johnsonii NCC 533] Length = 391 Score = 99.0 bits (245), Expect = 9e-19, Method: Composition-based stats. Identities = 60/382 (15%), Positives = 131/382 (34%), Gaps = 58/382 (15%) Query: 14 ERTRHGKIIYYF-----RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68 + + GK Y F + +G R+++ T+ A A+ + + N ++K Sbjct: 12 YKLKSGKKRYEFVISLGQNSNGDRVQVHRRGFKTYAEA--EAVFNKLSQTKPDNFVKQKQ 69 Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRK 127 + L + ++ + ++ + FD +I G+ KIT ++ + + Sbjct: 70 IKVSELRDLWFENYK-TQVKESTANKNKQVFDNHVIPDFGNQYVDKITVAELQKWADRKA 128 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR-----PWTKEDMQQF 182 + LF++ +R YV+ NP + PK+ + R +T+E++ QF Sbjct: 129 KQIVKYRDAINEFNALFEYGIRLNYVSENPLKRIIIPKKTSRPRRDTEHNVYTREELNQF 188 Query: 183 KSFWSE-GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT------------ 229 E G F+ L +GLR S++ Q + ++ KT Sbjct: 189 LEVAKEYGLVQYTYFKLLSATGLRKSEALALTWQDIDLKAGTLSINKTLAYGLDNKTIIQ 248 Query: 230 -----GTIITVELPDGFMKLL----AMTPIGKETFFINNDKQKMNATQFSIWFK------ 274 + + + D ++L I F + ++ W K Sbjct: 249 PPKSPKSKRILPISDSLKEVLIDYKQKQKIISNKLFHTIKGTYLKMSKPDQWLKSIYAKD 308 Query: 275 -----AKATKAGVNK--------SAHGVRKFSATIS-ADAGATAHELMATYGWKTVDQA- 319 A + + + HG R AT+ A+ + G + + Sbjct: 309 HEEKVKYAKTHNLKEPQPDLRHITVHGFRHTFATLLIAETNVKPKTVQMLLGHENIQMTL 368 Query: 320 ETYTKGADRIRL-GIKNSRRIS 340 + YT ++ + + ++++ Sbjct: 369 DIYTHVNNKNKEDAVNALKQLN 390 >gi|332096520|gb|EGJ01516.1| integrase [Shigella dysenteriae 155-74] Length = 348 Score = 99.0 bits (245), Expect = 9e-19, Method: Composition-based stats. Identities = 60/341 (17%), Positives = 110/341 (32%), Gaps = 23/341 (6%) Query: 4 SLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS 63 + LPP + R G Y +R R + + ++A + Sbjct: 10 TRDLPPNLY---NRGG--YYSYRDPRSGREFGIGRDKRIAVNEAIAANMELLSTQHISLL 64 Query: 64 PRKKPTT---LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120 R K + LI +R L+ N+ I G + I + + Sbjct: 65 DRIKGNSVTLFYELILNFRNEIERRQLSTNTMKRHNQRLKIISEYFGGVPVKNIGIREVY 124 Query: 121 SGVESRK--HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 S +E R + A Q+ + +FK A+ +P + + + + R E Sbjct: 125 SFLEIRAVGSKFAIANQYRALLSDIFKTAIASGLAEEDPASATRPFRTEVKRSRLLIDEY 184 Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238 + K + L + L +G R D + +++ ++ QKTG I + LP Sbjct: 185 LLIRKIADVQNEWFGLCMDLALVTGQREGDLAAMRWEDIRDGRLYVEQQKTGAKIRISLP 244 Query: 239 DGFMKLLAMTPIGKETFFINNDK-----QKMNATQFSIWFKAKATKAGVNK-----SAHG 288 +L + N K A + F+ +G+ H Sbjct: 245 TTISRLNLTLADVLDNLKKINGKNEKLLGGKTARTIAAQFRIARDTSGLKWEGDPPPFHE 304 Query: 289 VRKFSAT-ISADAGATAHELMATYGWKTVDQAETYTKGADR 328 +R S SA+ G+ + A G ++ + Y G R Sbjct: 305 IRSLSGRLHSAEKGSDFTQ--ALLGHRSSSMTDKYRDGRGR 343 >gi|262067786|ref|ZP_06027398.1| conserved domain protein [Fusobacterium periodonticum ATCC 33693] gi|291378509|gb|EFE86027.1| conserved domain protein [Fusobacterium periodonticum ATCC 33693] Length = 362 Score = 99.0 bits (245), Expect = 9e-19, Method: Composition-based stats. Identities = 44/290 (15%), Positives = 105/290 (36%), Gaps = 23/290 (7%) Query: 54 STPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK 113 P +K+ + L + K+ L + + ++F+ +K D + Sbjct: 68 EKPLIAENKKDKKEKILFENLYDIWLKNKKPSKL---TLRNLTTHFNN-SKKLHKLDIKT 123 Query: 114 ITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAIN-------PCLSVERPKR 166 I +++ + + + + + +F +A+ ++ + P E+ K+ Sbjct: 124 INGIILQNILNDANLSKGTLRNLKSFWKQIFDFAILNDFCQKDYVTFLKLPTE--EKGKK 181 Query: 167 KTEGIRPWTKEDMQQFKSFWSEGSQPRL----AFEFLLYSGLRCSDSCRAGVQHL--QNN 220 ++ R +T ED+Q+ + + R Y+GLR ++ ++++ + Sbjct: 182 TSDRNRIFTTEDLQKLWNNLYNDEKDRFKIIDVILVHCYTGLRPNELLNIKIENVNLKEK 241 Query: 221 IFSIKTQKTGTIIT-VELPDGFMKLLA-MTPIGKETFFINNDKQKMNATQFSIWFKAKAT 278 I KT + I + +P +L+ KE F D K+ + F+ Sbjct: 242 YIDITKSKTKSGIRRLPIPSKIFELIKKRYDNEKEFLFTRYDGAKLLYDTYDYQFREVMI 301 Query: 279 KAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGA 326 ++ + H R AT+ ++A ++ G + +E Y Sbjct: 302 DLEIDYHTTHDCRHTFATLLSNAEIDKEIIIKLTGHSSYKITSEKYIHKV 351 >gi|209418091|ref|YP_002274120.1| site-specific recombinase [Mycobacterium liflandii 128FXT] gi|169409223|gb|ACA57629.1| site-specific recombinase [Mycobacterium liflandii 128FXT] Length = 345 Score = 99.0 bits (245), Expect = 9e-19, Method: Composition-based stats. Identities = 45/314 (14%), Positives = 98/314 (31%), Gaps = 57/314 (18%) Query: 77 EYRKSAHWGSLAVNSRISFESYFDQII-------RKSGDFDYRKITTKHIRSGVESRKHT 129 E+ + ++ ++ F+ + + + +R+ T Sbjct: 21 EFLADRAIRKPSPHTTKAYRQDFEAVALLLAGGADAISTLPTNALNKESLRAAFAVYAET 80 Query: 130 --PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ------- 180 +S + ++ L + + NP ++ RPK + +T + + Sbjct: 81 HSAASIRRCWSTWNTLCTFLYTANLLDANPMPAIGRPKVPKALPKSYTADAVNNLIAAID 140 Query: 181 -----QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ---NNIFSIKTQKTGTI 232 +S W E + R L +GLR + RA + ++ + + K Sbjct: 141 TDDGSARRSNWPE--RDRAIIFTALLTGLRADELIRANIGAIRCNADGGVLHVSGKGNKD 198 Query: 233 ITVELPDGFMKLLAM-----------------------TPIGKETFFINNDKQKMNATQF 269 + +++L F+ +D +++ Sbjct: 199 RRIPCDTKLIEMLQRYLQTREDRIPHLRKRSASPDVMGRFSPTAPLFVGSDGERITRGTL 258 Query: 270 SIWFKAKATKAGVNKS------AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 KAG+N HG+R AT A+A + + LM G +++ ++ Y Sbjct: 259 QYRILRGFKKAGINNDRAAGALVHGLRHTFATELANANVSVYALMKLLGHESMVTSQRYV 318 Query: 324 --KGADRIRLGIKN 335 AD R +N Sbjct: 319 DGAAADTRRAAERN 332 >gi|158341027|ref|YP_001522194.1| phage integrase [Acaryochloris marina MBIC11017] gi|158311268|gb|ABW32880.1| phage integrase [Acaryochloris marina MBIC11017] Length = 351 Score = 99.0 bits (245), Expect = 9e-19, Method: Composition-based stats. Identities = 52/296 (17%), Positives = 103/296 (34%), Gaps = 32/296 (10%) Query: 56 PKREYINSPRKKPTTLKWL-ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKI 114 R P+ P L+ + E+ +S ++ N+R ++E Q + D + +I Sbjct: 21 AARSRTQPPKSTPADLRRTRVEEFMRS---REISSNTRKAYERDLKQFMD-WTDKGWHEI 76 Query: 115 TTKHIRSGVESRKHTP---------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK 165 + + + K P ++ + L +++ FKW ++Y+ +P L +E+ K Sbjct: 77 SARDLDRYKNHLKVEPNQRGQLRKNATINRNLAALQSFFKWLTVRDYITKDPTLLLEKLK 136 Query: 166 RKTEGIRPWTKEDMQQ-FKSFWSEGSQPRLAFEF--LLYSGLRCSDSCRAGVQHLQNNIF 222 + ++++++ +++ G L+ GLR S+ R V Sbjct: 137 ADPVLPQEFSQDEVDNLYQAICDRGFHTFRDRALLHLIDHGLRASEIHRLNVGDYDGQRI 196 Query: 223 SIKTQKTGTIITVELPDGFMKLLAMTP----------IGKETFFI----NNDKQKMNATQ 268 I+ K ++ TV L K + F+ N+ Q++ Sbjct: 197 IIRVAKADSVGTVPLLKKARKAIDQYKQWREQQGDVLGNDSPLFVSHSNNSKGQRLQYWG 256 Query: 269 FSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 FKA A A V N H R AT + + Y+ Sbjct: 257 IYKIFKAIADIAEVENAHPHRGRHTLATRLVMKDMDSVLARRITRHTSEQSFVRYS 312 >gi|159905040|ref|YP_001548702.1| integrase family protein [Methanococcus maripaludis C6] gi|159886533|gb|ABX01470.1| integrase family protein [Methanococcus maripaludis C6] Length = 282 Score = 99.0 bits (245), Expect = 9e-19, Method: Composition-based stats. Identities = 37/254 (14%), Positives = 87/254 (34%), Gaps = 15/254 (5%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLF 144 L+ +++ +++ +K + +R + + + T +S + L + + Sbjct: 14 AGLSKSTKNAYKYGLRTF-QKYVNKRWRDVMVNDVILFYTNHNATKNSKMGLLGIVNRFY 72 Query: 145 KWAVRQEYVAINPCLS-VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSG 203 WA+ + Y+ NP ++ +R+ + T + S + S + F+L +G Sbjct: 73 DWAIEENYLLENPVKKFLKTLRREKKERNYLTTSQAEYLLSNMKKYSY-YVMTLFILRTG 131 Query: 204 LRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFM-------KLLAMTPIGKET 254 +R S+ +Q + + I+ K V + K + Sbjct: 132 VRISEIRNIKLQDIDFESKCIFIRAGKGKKDRYVFFDNNLEFHIKEYIKERCYRDPDCDN 191 Query: 255 FFINNDKQKMNATQ---FSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATY 311 FIN + ++ ++ + A + + H +R AT + G L Sbjct: 192 LFINRFGRPVSRRSIIYYTEYLNEVAPNIHIRITPHILRHTFATSMLERGIDLKSLSLIL 251 Query: 312 GWKTVDQAETYTKG 325 G + + Y Sbjct: 252 GHENISTTSIYLHK 265 >gi|255014532|ref|ZP_05286658.1| integrase [Bacteroides sp. 2_1_7] gi|293370765|ref|ZP_06617311.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] gi|292634125|gb|EFF52668.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] Length = 401 Score = 99.0 bits (245), Expect = 9e-19, Method: Composition-based stats. Identities = 37/230 (16%), Positives = 80/230 (34%), Gaps = 13/230 (5%) Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 + ++ + ++A + + + A R+ + N ++ + + E+++ Sbjct: 152 KVMVNKPISRNTASAYWNIFKQVLTKAYRERRLVDNIASLLDNIPCTIPVKQSLSLEEVR 211 Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL-----QNNIFSIKTQKTGTIITV 235 + + R A F SGLR SD +++ + K KT V Sbjct: 212 KLYNSECSVPVVRKAAIFSCLSGLRISDILNLKWENIQTYADGGHYLDFKCVKTQRQTQV 271 Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFS 293 + D +L+ K + + + M W K + G+ K + H R Sbjct: 272 PIGDDAYELIQPQTTDK--YIFSGFNRTMTYRVMQDWIK----ECGIKKHITFHCFRHTY 325 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343 A++ + G + + K V + Y AD + R+++V Sbjct: 326 ASLQLELGTDIYTVQHLLNHKNVSTTQIYASHADPKTREAADRIRLTNVK 375 >gi|310818587|ref|YP_003950945.1| phage integrase family protein [Stigmatella aurantiaca DW4/3-1] gi|309391659|gb|ADO69118.1| Phage integrase family protein [Stigmatella aurantiaca DW4/3-1] Length = 395 Score = 99.0 bits (245), Expect = 9e-19, Method: Composition-based stats. Identities = 57/380 (15%), Positives = 102/380 (26%), Gaps = 64/380 (16%) Query: 21 IIYYFRKGHGRRIRLPYPHEST-FIPAY-----MSALTGSTPKREYINSPRKKPTTLKWL 74 + Y G RIR P + Y + LTG+ K TL Sbjct: 23 VKYQHPSGRVERIRKASPINTRRGAEEYERQIRHALLTGTFGKENGAGRVL----TLGEF 78 Query: 75 ISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133 + + + + +S ++ + D +I G+ I I + + PS A Sbjct: 79 VPRFLTYSENNN-KHSSVVTKQQILDDHLIPAFGNMPLDAIGPAEIEDFKAAMRKKPSGA 137 Query: 134 -----------------------------IQFLTSMRVLFKWAVRQEYVAINPCLSVERP 164 LT + L A Q + P V+ Sbjct: 138 RARKETPTRAALLKRKGSGAVKLLSLKSINNVLTVLHKLLALAQEQGVLQHVP--RVKLF 195 Query: 165 KRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224 K + E+ ++ + + R L +GLR + L + Sbjct: 196 KTDKPAFDFLSFEEAERMSNAAEP--EWRTLILVALKTGLRLGELIGLQWADLDLQRGKL 253 Query: 225 KTQKTGTIITVELPDGFMKLLAMTPIG------------KETFFINNDKQKMNATQFSIW 272 ++T V LP G + P F D + + A Sbjct: 254 NVRRTIWRDVVGLPKGGRERTVDLPTSTVEALKAHRHLCGPYVFCQTDGRPLTAGMTKHP 313 Query: 273 FKAKATKAGVNK-----SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 +AGV++ H +R + A G + G T++ Y + Sbjct: 314 LLRALRRAGVSRPEGSIGWHDLRHTYGSHLAMRGVALKVIQELMGHATIEMTMRYAHLSP 373 Query: 328 RIRLGIKNSRRISSVVDSDD 347 R + + + Sbjct: 374 EAR--ESAVQELDRPIPQPR 391 >gi|88803782|ref|ZP_01119305.1| tyrosine type site-specific recombinase [Polaribacter irgensii 23-P] gi|88780310|gb|EAR11492.1| tyrosine type site-specific recombinase [Polaribacter irgensii 23-P] Length = 374 Score = 99.0 bits (245), Expect = 9e-19, Method: Composition-based stats. Identities = 45/261 (17%), Positives = 90/261 (34%), Gaps = 19/261 (7%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131 KWL + R S + V ++ Y +++K+ F + + + S K Sbjct: 108 KWLF-QKRLSKNTVHTYVTVTATYIRY--ALLKKADLFSMKTVAAFNYDSIFVPNKSISY 164 Query: 132 SAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 QF+ ++ F + E + +ERP+++ + + +++ S + Sbjct: 165 Q-NQFIGGIQKFFAYKGYAYEEIP------IERPRKEKKLPIILSGAEIKAIFSTIT-NL 216 Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI--KTQKTGTIITVELPDGFMKLLA-- 246 + + L +GLR ++ V + I + K L F+K+L Sbjct: 217 KHKALLSLLYSAGLRIGEAITLEVTDIDCQRMLIYGRQAKGKKDRYTLLSPVFLKILRDY 276 Query: 247 -MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGAT 303 + K + F + + K KAG+ K + H +R AT + G Sbjct: 277 YVAYRPKNSLFEGANGSTYSDASAQKVLKNALFKAGIRKKATLHSLRHSFATHLLEKGTD 336 Query: 304 AHELMATYGWKTVDQAETYTK 324 + G + YT Sbjct: 337 IRYIQELLGHSSPKTTMIYTH 357 >gi|306519780|ref|ZP_07406127.1| putative tyrosine recombinase [Clostridium difficile QCD-32g58] Length = 290 Score = 99.0 bits (245), Expect = 9e-19, Method: Composition-based stats. Identities = 44/267 (16%), Positives = 101/267 (37%), Gaps = 21/267 (7%) Query: 85 GSLAVNSRISF----ESYFDQIIRKSGDF-DYRKITTKHIRSGVESRKHTPSSAIQFLTS 139 L+ N+ S+ + Y + I +KS D + +E + ++ + ++S Sbjct: 15 KKLSENTVASYFMDIKKYMEYINQKSIKLVDIVENDIISYLIKLEKDNVSIATIARMISS 74 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLA 195 ++ + NP +++PK K E I T+E++++ +F + + + Sbjct: 75 IKSFHDYLFLNHICTNNPAKDIKKPKIKKENINILTEEEIERLLNFPKLTTPKLIRDKAI 134 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ---KTGTIIT------VELPDGFMKLLA 246 FE L +G++ S+ ++ + +I I K +I + L + Sbjct: 135 FEVLYGTGIKVSELVEMNIEDIDLDIDYIYCNSCCKNQRVIPLCDITKLYLEKYLKEARP 194 Query: 247 MTPIGKE-TFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHG--VRKFSATISADAGAT 303 + E + F+++ Q+ K + A ++K+ + +R A + GA Sbjct: 195 KMAVEGEKSLFVSSLGQRFTRQGLWKVIKKYSNLANIDKNINPTMLRHSFAIHLLNEGAN 254 Query: 304 AHELMATYGWKTVDQAETYTKGADRIR 330 + G + + Y D+ R Sbjct: 255 IAVVSKILGNVNLSSLQVYLNHIDKKR 281 >gi|121602777|ref|YP_989194.1| putative integrase [Bartonella bacilliformis KC583] gi|120614954|gb|ABM45555.1| putative integrase [Bartonella bacilliformis KC583] Length = 95 Score = 99.0 bits (245), Expect = 1e-18, Method: Composition-based stats. Identities = 35/93 (37%), Positives = 49/93 (52%) Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISA 298 LA PIG ETF + ++ + S F +AG+ KSAHG+RK +AT +A Sbjct: 2 PKLAATLATGPIGDETFICSKSEKNSSKKALSTCFVKPCNQAGIKKSAHGLRKLAATRAA 61 Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 ++GAT ++ A +GW A Y K ADR L Sbjct: 62 NSGATVSQMRALFGWTEDSMASLYPKRADRKNL 94 >gi|225567989|ref|ZP_03777014.1| hypothetical protein CLOHYLEM_04062 [Clostridium hylemonae DSM 15053] gi|225163277|gb|EEG75896.1| hypothetical protein CLOHYLEM_04062 [Clostridium hylemonae DSM 15053] Length = 364 Score = 99.0 bits (245), Expect = 1e-18, Method: Composition-based stats. Identities = 53/340 (15%), Positives = 106/340 (31%), Gaps = 61/340 (17%) Query: 41 STFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD 100 F Y A+ + + IN +L+ N + + Sbjct: 39 PPFARDYFRAMEPKSSAKTRINYAYDIRVFFHFLMEA----------NPNYK-------N 81 Query: 101 QIIRKSGDFDYRKITTKHIRSGVESRK----------HTPSSAIQFLTSMRVLFKWAVRQ 150 I + D K+ I +E K ++ + ++++R + + + Sbjct: 82 HTISQFDVSDLEKLEPVDIEEYMEYLKVYRHEDELITNSEKGLSRKMSALRSFYSYYFKH 141 Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS----------------FWSEGSQPRL 194 + + NP L V+ PK + I +++ + + Sbjct: 142 QIITKNPTLLVDMPKLHDKAIIRLDADEVALLLDYVETCGSKLSGQALTYYHKTKDRDLA 201 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLL------- 245 LL +G+R S+ + + NN ++ T+K G + V + K L Sbjct: 202 ILTLLLGTGIRVSECVGLDLTDVDFKNNGITV-TRKGGNQMVVYFGEEVEKALLTYINGD 260 Query: 246 --AMTPIGKE--TFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299 A TP+ F++ +++M K A + NK + H +R T Sbjct: 261 RKAATPLSGHENALFLSTQRRRMGIQAMENMVKKYARQVTPNKKITPHKLRSTYGTSLYK 320 Query: 300 AGATAHELMATYGWKTVDQA-ETYTK-GADRIRLGIKNSR 337 + + G K V+ + Y DR R + Sbjct: 321 ETGDIYLVADVLGHKDVNTTKKHYAAIDEDRRRKAASAVK 360 >gi|171741094|ref|ZP_02916901.1| hypothetical protein BIFDEN_00161 [Bifidobacterium dentium ATCC 27678] gi|171276708|gb|EDT44369.1| hypothetical protein BIFDEN_00161 [Bifidobacterium dentium ATCC 27678] Length = 286 Score = 99.0 bits (245), Expect = 1e-18, Method: Composition-based stats. Identities = 32/264 (12%), Positives = 74/264 (28%), Gaps = 7/264 (2%) Query: 63 SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG 122 P P T + + ++ ++ + + +T Sbjct: 9 RPEPFPQTWEQSVDQWLTYLRAAGRMPSTIKTRRVKLWGFVHYLAGKPPENVTRADCEKW 68 Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 + + + ++ F W V + + NP + + P P + Sbjct: 69 MGREGLSAETRKGIRATLTSYFDWCVDHDLRSDNPAIGL--PHVAGSKPHPRPCPETGIR 126 Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL---QNNIFSIKTQKTGTIITVELPD 239 ++ + RL GLR S+ + + + +N K + LP Sbjct: 127 EAMDGLSERDRLMVRLGAELGLRRSEIAKVSGRDVVGPADNALLRVVGKGDKQRLIPLPQ 186 Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISAD 299 + + G F + + ++ K + + H +R +AT + Sbjct: 187 DLA--VRIRQTGDGWLFPSRNDHGISHLTAGRVGKIVGSALPQSYGTHSLRHRAATQAYL 244 Query: 300 AGATAHELMATYGWKTVDQAETYT 323 A + G +V + Y Sbjct: 245 ATHDLLAVSTLLGHSSVATTQRYV 268 >gi|222085948|ref|YP_002544480.1| tyrosine site-specific integrase/recombinase protein [Agrobacterium radiobacter K84] gi|221723396|gb|ACM26552.1| tyrosine site-specific integrase/recombinase protein [Agrobacterium radiobacter K84] Length = 431 Score = 99.0 bits (245), Expect = 1e-18, Method: Composition-based stats. Identities = 61/378 (16%), Positives = 113/378 (29%), Gaps = 66/378 (17%) Query: 25 FRKGHG------RRIRLP--YPHESTFIPAYMS---ALTGSTPKREYINSPRKKPTTLKW 73 +R G G +RI++ H S A + +K + Sbjct: 47 YRPGAGGRGVSKKRIKIGTLATHSPEAAREEASRTLARVTLGSDPAAARTDERKGQVVAA 106 Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKS---------GDFDYRKITTKHIRSGVE 124 + + + + ++ ++ I+ D ++ K IR V Sbjct: 107 VAETWLEEHVLIKRKPKTYNEYKLAVERYIKPVLGSLKFALVEPSDVLRMQAKIIRGKVN 166 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVA--INPCLSVERPKRKTEGIRPWTKEDMQQF 182 + A + L ++ ++ WA + V NP S+ER K R T E++ Sbjct: 167 KANGGRTMANRALATLSAIYGWAQDLKIVPLGFNPVTSIERFKENQIE-RFLTSEEIGSL 225 Query: 183 KSFWSE------------------------------GSQPRLAFEFLLYSGLRCSDSCRA 212 + +E G A L++G R S+ R Sbjct: 226 ATALTEAETIGLPYEVDETKAKAKHANRVENRRTVYGEHAIAAIRLYLFTGCRRSEILRL 285 Query: 213 GVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFS 270 + I + KTG V L +L + D + + Sbjct: 286 TWSDVDLERGILFLPDSKTGKK-PVILSPQAQAILTNLTRVGKYVIAGADAGTKDEAPRA 344 Query: 271 IW---FKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 +KA +AG++K H +R A+I A G + G K + + Y Sbjct: 345 DIDRPWKAVTRRAGLHKLRLHDLRHTYASIGAGGGQGLPIIGKLLGHKNIATTQRYAH-- 402 Query: 327 DRIRLGIKNSRRISSVVD 344 L +R++ + Sbjct: 403 ----LDTNPMKRVAGFIG 416 >gi|206975676|ref|ZP_03236588.1| integrase family protein [Bacillus cereus H3081.97] gi|206746138|gb|EDZ57533.1| integrase family protein [Bacillus cereus H3081.97] Length = 388 Score = 99.0 bits (245), Expect = 1e-18, Method: Composition-based stats. Identities = 45/290 (15%), Positives = 94/290 (32%), Gaps = 40/290 (13%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131 +L++++ + + + ++ + II G+ + ++T I+ + Sbjct: 70 YLLNQWLEDKQ-TKVKKQTLQTYRWLVEKHIIPAIGNMELTQLTPMAIQKLYNQLTKEKA 128 Query: 132 SAIQFLTSMRVLFKW----AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + + + + L A R ++ NP V+RPK + + I+ W +++Q F Sbjct: 129 LSDENIQKVHTLINDSLKKAERWGIISKNPASLVDRPKAEKKEIKVWDVKEVQTFLKHAQ 188 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKT--------------QKTGT 231 S+ +AF L +G+R + + + I K+G+ Sbjct: 189 SHSRYYIAFLLALTTGMRQGEILGLRWRDVDFETGCIRITQTLSSDGKEILPYTKTKSGS 248 Query: 232 IITVELPDG----FMKLLAMTPIGK-----------ETFFINNDKQKMNATQFSIWF-KA 275 TV+LP+ K + K + N + F Sbjct: 249 R-TVDLPEETIIQLKKHRKLIESEKLEAGSEVYNNWDLVVCTELGTPTNKSNIRRSFNSI 307 Query: 276 KATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324 H +R AT+ G + G V +TY+ Sbjct: 308 IKKAKIPKIRFHDMRHTHATLLLLQGVNPKIVSERLGHADVRITLDTYSH 357 >gi|28211234|ref|NP_782178.1| DNA integration/recombination protein [Clostridium tetani E88] gi|28203674|gb|AAO36115.1| DNA integration/recombination protein [Clostridium tetani E88] Length = 343 Score = 99.0 bits (245), Expect = 1e-18, Method: Composition-based stats. Identities = 44/316 (13%), Positives = 104/316 (32%), Gaps = 53/316 (16%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF----DYRKITTKHIRSGV--- 123 + + I ++ L + S+ES R D + + IT + + + Sbjct: 16 INYAIDDFMFYCQQKDLRPKTIASYESTLRLFARYLEDTFSINNVKDITEEMCKDYITYT 75 Query: 124 -------------------------ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPC 158 +K + ++ ++ +++V F W + + +N Sbjct: 76 KERGKYTFVADKNTTFINQPSNREDYGKKISTTTVNNYIRNLKVFFNWCIEERITNVNNM 135 Query: 159 LSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGV 214 +++ K T E+ ++ + + + + ++ +G+R ++ + Sbjct: 136 QRIKQFKNNRISKDQLTDEEFKRLVRYLDTTKYHEFRDYVIIQLIIDTGMRIGETLALTI 195 Query: 215 QHLQNNIFSIKTQ----KTGTIITVELPDGFMKLLAMTP------IGKETFFINNDKQKM 264 ++ + +I Q K V +LL + + F ++ Sbjct: 196 DNVDLDRRAILIQAEINKGRKDRYVFYSYTMSRLLKRWIQYKDRYVESDLLFCVKRGTQL 255 Query: 265 NATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 + F F +A ++K S H +R A AG + +L G +V E Sbjct: 256 QISNFEKNFSKYIKRARIDKKISPHTLRNNYARRFLLAGGSIFDLSRILGHSSVTVTEK- 314 Query: 323 TKGADRIRLGIKNSRR 338 AD L ++ R+ Sbjct: 315 -AYAD---LTTEDIRK 326 >gi|260431124|ref|ZP_05785095.1| site-specific tyrosine recombinase XerC [Silicibacter lacuscaerulensis ITI-1157] gi|260414952|gb|EEX08211.1| site-specific tyrosine recombinase XerC [Silicibacter lacuscaerulensis ITI-1157] Length = 306 Score = 99.0 bits (245), Expect = 1e-18, Method: Composition-based stats. Identities = 39/288 (13%), Positives = 87/288 (30%), Gaps = 29/288 (10%) Query: 72 KWLISEYRKS-AHWGSLAVNSRISFESYFDQII--------RKSGDFDYRKITTKHIRSG 122 + + + +S + + N+ ++ + + G +I+ +R+ Sbjct: 9 RDALQLWLESLSALAGRSDNTTNAYRRDVTDFLAFMTLHHNERQGLAALERISVTDMRAW 68 Query: 123 VESRKHT---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179 + ++ + S + L++++ ++W +E LS PK + RP ++ Sbjct: 69 MAQQRDSGVGARSLARKLSAVKSFYRWLAEREGFEPTAVLSTRAPKFTKKLPRPLAEDAA 128 Query: 180 QQFKSFWS-------EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232 + ++ L GLR S++ K Sbjct: 129 RAMIETVELQSSSDWVAARDVAVVTLLYGCGLRISEALSLTGADAPLPATLRIVGKGDKE 188 Query: 233 ITVELPDGFMKLLAM-------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS 285 V + + + E F + +N + G+ + Sbjct: 189 RIVPVIPAARQAVDRYLELCPHPQGATEPLFRGVRGKALNPKAIQSVMAKARMQLGLPAT 248 Query: 286 A--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 A H +R AT AG + G ++ + YT D RL Sbjct: 249 ATPHAMRHSFATHLLSAGGDLRAIQELLGHASLSTTQAYT-AVDTARL 295 >gi|170769298|ref|ZP_02903751.1| integrase [Escherichia albertii TW07627] gi|300901680|ref|ZP_07119738.1| site-specific recombinase, phage integrase family [Escherichia coli MS 198-1] gi|170121950|gb|EDS90881.1| integrase [Escherichia albertii TW07627] gi|300354904|gb|EFJ70774.1| site-specific recombinase, phage integrase family [Escherichia coli MS 198-1] Length = 330 Score = 99.0 bits (245), Expect = 1e-18, Method: Composition-based stats. Identities = 42/239 (17%), Positives = 85/239 (35%), Gaps = 22/239 (9%) Query: 94 SFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFLTSMRVLFKWAVRQ 150 S+ +++R+ GD ++T K + + PSS + L + +F + Sbjct: 81 SYRVRLGKVVREMGDPRASQMTRKFMLEYRSEKLQAGLMPSSINRDLCVLSTMFTVLIEA 140 Query: 151 E-YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDS 209 E + NP + + K + + + +++++ EG R+A L +G R S++ Sbjct: 141 EVFHNANPVRGIRKLKVQNTEMAFLSDDEIERLLERL-EGDARRVAI-LCLSTGARWSEA 198 Query: 210 CRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF 269 +H+ N + K G +V + D + I + + Sbjct: 199 SELRGEHIVGNRVTFFNTKNGKSRSVPVADSVVP------------LIKTRRTGLLYQVD 246 Query: 270 SIWFKAKATKAGVNK----SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 + F+ + + + H +R AT G L G T+ Q TY Sbjct: 247 YLKFREILQEVKPDLPKGQATHVMRHTFATHFMMNGGNIVTLQRILGHATIQQTMTYAH 305 >gi|153939017|ref|YP_001391193.1| phage integrase family site specific recombinase [Clostridium botulinum F str. Langeland] gi|152934913|gb|ABS40411.1| site-specific recombinase, phage integrase family [Clostridium botulinum F str. Langeland] gi|295319232|gb|ADF99609.1| site-specific recombinase, phage integrase family [Clostridium botulinum F str. 230613] Length = 330 Score = 99.0 bits (245), Expect = 1e-18, Method: Composition-based stats. Identities = 46/294 (15%), Positives = 97/294 (32%), Gaps = 47/294 (15%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFD----QIIRKSGDFDYRKITTKHIRSGVESRKH-- 128 I E+ +L+ + +S+E + + G D +K+T K IR + K+ Sbjct: 8 IDEFMIYCESKNLSKKTMMSYEQTLRLFTKYLEEEKGIGDVKKVTEKMIREYINYTKNRG 67 Query: 129 --------------TP------------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE 162 TP ++ ++ +++V F + + Q Y+ + +++ Sbjct: 68 KYTIVGDKETLKTNTPEMRKDYGKKVSITTINNYIRNIKVFFNFLLEQSYIKKDVVKNIK 127 Query: 163 RPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ 218 + K + + T + + L LL +G+R + V+++ Sbjct: 128 QFKNQRKAKEFITDSQFAELLRHIDTTKFHERRDHLCIMMLLDTGMRIGECLEIKVENID 187 Query: 219 NNIFSI------KTQKTGTIITVE--LPDGFMKLLAMTP--IGKETFFINNDKQKMNATQ 268 N SI K + + + L + + F + Sbjct: 188 MNYRSILLPAVDTKGKRDRYVYFSQVMQKELRRWLQYKDRYVESDYLFCTTKGTPVLIRT 247 Query: 269 FSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321 F K A +AG+ + H +R A +G + + L G +V E Sbjct: 248 FERKLKDYANRAGLKDIHPHQLRNNFAKRFLMSGGSIYILSQVLGHSSVKVTEQ 301 >gi|229061589|ref|ZP_04198932.1| Prophage LambdaBa02, site-specific recombinase, phage integrase [Bacillus cereus AH603] gi|228717710|gb|EEL69361.1| Prophage LambdaBa02, site-specific recombinase, phage integrase [Bacillus cereus AH603] Length = 362 Score = 99.0 bits (245), Expect = 1e-18, Method: Composition-based stats. Identities = 43/293 (14%), Positives = 95/293 (32%), Gaps = 28/293 (9%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHT 129 L+ + + S ++ ++ +++ + G+ I + + + Sbjct: 49 FSQLVEIWMQEKE-SSCRPSTLYQYKRILRSRVMPEFGEKRLSDIKPLTVHNFHQKLLKE 107 Query: 130 PSSAIQFLTS---MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + + ++ + V E + NP +RPK K + WT E+ +F + Sbjct: 108 GLTTKYISSVDVMLKQILDKGVELEMINSNPAKKAKRPKVKKKAQASWTIEEAMKFMEYA 167 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT------------ 234 + F L++G+R + + +I Q+T T++ Sbjct: 168 KIQGSYYITFVLALHTGMRIGEVLALKWNDINFENKTIHVQRTLTLVDGKYELGETKTEA 227 Query: 235 ----VELPDGFMKLLAMTPIGK-----ETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284 + + + M L K + +K+ ++ KA V Sbjct: 228 SNRIIPMTEELMGELLEYQNHKKENSFDLLICTRNKKIVHPYTIRYQMKALCEAIDVPYI 287 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNS 336 H +R+ TI D+GA A + G V YT + ++ + Sbjct: 288 RFHDIRRTFTTILIDSGANAKVVSKLLGHTNVSTTLNIYTDVYEERQIEVTEM 340 >gi|91209996|ref|YP_539982.1| putative phage integrase [Escherichia coli UTI89] gi|91071570|gb|ABE06451.1| putative phage integrase [Escherichia coli UTI89] Length = 330 Score = 99.0 bits (245), Expect = 1e-18, Method: Composition-based stats. Identities = 42/239 (17%), Positives = 85/239 (35%), Gaps = 22/239 (9%) Query: 94 SFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFLTSMRVLFKWAVRQ 150 S+ +++R+ GD ++T K + + PSS + L + +F + Sbjct: 81 SYRVRLGKVVREMGDPRASQMTRKFMLEYRSEKLQAGLMPSSINRDLCVLSTMFTVLIEA 140 Query: 151 E-YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDS 209 E + NP + + K + + + +++++ EG R+A L +G R S++ Sbjct: 141 EVFHNANPVRGIRKLKVQNTEMAFLSDDEIERLLERL-EGDARRVAI-LCLSTGARWSEA 198 Query: 210 CRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF 269 +H+ N + K G +V + D + I + + Sbjct: 199 SELRGEHIVGNRVTFFNTKNGKSRSVPVADSVVP------------LIKTRRTGLLYQVD 246 Query: 270 SIWFKAKATKAGVNK----SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 + F+ + + + H +R AT G L G T+ Q TY Sbjct: 247 YLKFREILQEVKPDLPKGQATHVMRHTFATHFMMNGGNIVTLQRILGHATIQQTMTYAH 305 >gi|319937080|ref|ZP_08011489.1| hypothetical protein HMPREF9488_02323 [Coprobacillus sp. 29_1] gi|319807858|gb|EFW04443.1| hypothetical protein HMPREF9488_02323 [Coprobacillus sp. 29_1] Length = 391 Score = 99.0 bits (245), Expect = 1e-18, Method: Composition-based stats. Identities = 57/363 (15%), Positives = 118/363 (32%), Gaps = 46/363 (12%) Query: 28 GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSL 87 G +R Y +++ + + I RK+ TL + EY + Sbjct: 26 GVTQRHTKSGFRTKKEARNYEASIIEKSNAKVLIPESRKR--TLNDVFDEYVEIEGKIKW 83 Query: 88 AVNSRISF-ESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS--SAIQFLTSMRVLF 144 A + + +++ + G+ ++ +++ + + + V+F Sbjct: 84 APATLYYYIKTHQTYVKGNFGNVPIESVSYVSLQAHINELSQRYNYPTVKNIKKVYSVIF 143 Query: 145 KWAVRQEYVAINPCLSVERPKR--KTEGIRPWTKEDMQQFKSFWSEGSQPR--------- 193 K VR Y++INP ++ P + K EG+ + +D+++ + S R Sbjct: 144 KHGVRAGYISINPVPNILLPNKPEKKEGVEIISDDDLKRLIEEIIKASPNRCFAKKAQYK 203 Query: 194 -----LAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQ-----------------KT 229 +A Y+GLR S+ + N +I+ + KT Sbjct: 204 YKSYGIALLIGRYTGLRISEVMALKKEDFDLERNQLTIRRRIEHAGLKRKEIYLTERLKT 263 Query: 230 GT-IITVELPDGFMKLLAMTPIGKET--FFINNDKQKMNATQFSIWFKAKATKAGVNKSA 286 + VE+ + L + + ++ F + A K + Sbjct: 264 KSSKARVEICSILSEYLKSWFVENPYDFVICDEHGDFISPVNFQERIRDTAKKLDIKFHY 323 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK--GADRIRLGIKNSRRISSVV 343 H +R AT AG + TV+ YT D+ ++ + Sbjct: 324 HMLRHTYATELMVAGVNPIVVRDLLRHSTVNTTWNVYTHPSRDDQRKVLDDLYDDNVEFM 383 Query: 344 DSD 346 D+D Sbjct: 384 DND 386 >gi|313681225|ref|YP_004058963.1| integrase family protein [Sulfuricurvum kujiense DSM 16994] gi|313154085|gb|ADR32763.1| integrase family protein [Sulfuricurvum kujiense DSM 16994] Length = 297 Score = 99.0 bits (245), Expect = 1e-18, Method: Composition-based stats. Identities = 41/266 (15%), Positives = 96/266 (36%), Gaps = 27/266 (10%) Query: 89 VNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVES--RKHTPSSAIQFLTSMRVLFK 145 + + S I+ GD R++ ++ ++ T + ++ +R +F+ Sbjct: 18 PRTHERYLSIIKHSILPVFGDSPIRELKVSNVEKWRNDLLKRFTAKTVKEYQIVLRGIFQ 77 Query: 146 WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLR 205 A+ E + NP +++ K K + P+ +++ + LA F+ +G+R Sbjct: 78 KALHDEEIGKNPIDALDSLKVKKPHVVPFMPYEVKLILDTAQGWFKNYLALGFM--TGMR 135 Query: 206 CSDSCRAGVQHL------------QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPI--- 250 + +++ + T+ +I + + D + L Sbjct: 136 VGEIVALKWENVNLKKREIYVCASRIEGVEGTTKTQSSIRYIPIIDTLVPFLEAQKKLSG 195 Query: 251 GKETFFINNDKQKMN-ATQFS-IWFKAKATKAGVNK-SAHGVRKFSATISADAGA-TAHE 306 KE F+N + +K+ + ++ + +R AT +G + +E Sbjct: 196 DKEYVFVNQYGEVFYDYKTIGANQWKSILKECKLDHRRMYEMRHTCATNLLMSGQYSVNE 255 Query: 307 LMATYGWKTVDQA-ETYTK--GADRI 329 + + G T E YT+ A+R Sbjct: 256 IASILGHTTPQMLFERYTRNISAERK 281 >gi|166154210|ref|YP_001654328.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis 434/Bu] gi|166155085|ref|YP_001653340.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|301335456|ref|ZP_07223700.1| site-specific tyrosine recombinase XerD [Chlamydia trachomatis L2tet1] gi|165930198|emb|CAP03683.1| integrase/recombinase [Chlamydia trachomatis 434/Bu] gi|165931073|emb|CAP06637.1| integrase/recombinase [Chlamydia trachomatis L2b/UCH-1/proctitis] Length = 300 Score = 99.0 bits (245), Expect = 1e-18, Method: Composition-based stats. Identities = 31/224 (13%), Positives = 71/224 (31%), Gaps = 23/224 (10%) Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 K + ++ + L +++V F + + + P +E PK + E++ Sbjct: 65 HKAKESETTLARRLIALKVFFHFLKDVKMLDQQPF--IEHPKIWKRLPSILSTEEVNSLL 122 Query: 184 SFWS--------EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235 S+ +G+R S+ C + + ++ + + T + V Sbjct: 123 DQPLNIPNLDTHIASRDAAILYTFYATGIRVSELCDLCIGDISDDFIRVTGKGRKTRL-V 181 Query: 236 ELPDGFMKLLAM-----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284 + + + +E F++ +K++ + A + Sbjct: 182 PISIKAKQAIDAYLSSFRDELQKKNPSEEHVFLSIRGKKLDRSCVWKRITFYAKLVTTKR 241 Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 S H +R AT + A + G + E YT A Sbjct: 242 ISPHSLRHAFATHLLNNHADLRIIQEMLGHSRISSTEIYTHVAS 285 >gi|126663343|ref|ZP_01734341.1| integrase [Flavobacteria bacterium BAL38] gi|126625001|gb|EAZ95691.1| integrase [Flavobacteria bacterium BAL38] Length = 295 Score = 99.0 bits (245), Expect = 1e-18, Method: Composition-based stats. Identities = 32/227 (14%), Positives = 85/227 (37%), Gaps = 19/227 (8%) Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM-----QQFKSF 185 +S + +++++ +K+ ++ + +++NP L + K + P++++++ + + Sbjct: 67 TSVNRKISALKSYYKFLLKVKQISVNPLLKHKSLKTAKKVQIPFSEKELLDVFSENEYAD 126 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKL 244 EG + R E +G+R ++ + + +I+ K + + D + L Sbjct: 127 DFEGIRNRFIIELFYTTGIRRAELINLNLNSVSEIQKTIRVIGKRNKERIIPVLDCTLNL 186 Query: 245 LAM---------TPIGKETFFINNDKQKMNATQFSIWFKAK--ATKAGVNKSAHGVRKFS 293 E ++ K++ + KS H +R Sbjct: 187 YKKYKSLRNGLELISDNEMLILSKTGNKVSESFVYRLINDYFSTVSKKEKKSPHVLRHSF 246 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKG--ADRIRLGIKNSRR 338 AT + GA + + G ++ + YT A+ ++ + R Sbjct: 247 ATHLLNNGADLNSVKELLGHASLSSTQIYTHSSLAELKKVYQEAHPR 293 >gi|77164210|ref|YP_342735.1| Phage integrase [Nitrosococcus oceani ATCC 19707] gi|76882524|gb|ABA57205.1| Phage integrase [Nitrosococcus oceani ATCC 19707] Length = 310 Score = 99.0 bits (245), Expect = 1e-18, Method: Composition-based stats. Identities = 45/247 (18%), Positives = 90/247 (36%), Gaps = 30/247 (12%) Query: 115 TTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174 T + + + R + + + +KWA++ V +P ++PKR Sbjct: 59 TEQFVAWQMRKRGTKAHIVARRSSCLGSFYKWAMKNALVESDPIYLADKPKRPYRIPVWL 118 Query: 175 TKEDMQQFKSF-----------------WSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQ 215 KE+ + F+ + + R + F +L SGLR S++ V+ Sbjct: 119 EKEEQRAFQEAVQRVEDLPENIFGRTQEHIKAVRRRYDVLFGLILNSGLRISEALAVKVR 178 Query: 216 HLQNNIFSIKT----QKTGTIITVELPDGFMKLLAMTPIGK---ETFFINNDK-QKMNAT 267 ++ K+ K V LP+ F ++L G+ + F + Sbjct: 179 DVRMVNGVAKSVRIIGKGNRERLVPLPEAFGQVLGAWLQGRGGEDFVFAKAPGEKPPGPH 238 Query: 268 QFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 + + +AG++K + H +R AT ++GA ++ A G + + YT Sbjct: 239 AVRAYLRRLIERAGIDKPVTPHKLRHTYATRLLESGAELVDIQALLGHVDLSTTQIYTH- 297 Query: 326 ADRIRLG 332 R+ Sbjct: 298 VSEERMA 304 >gi|158340051|ref|YP_001521220.1| phage integrase / plasmid pRiA4b ORF-3-like protein [Acaryochloris marina MBIC11017] gi|158310292|gb|ABW31907.1| phage integrase / plasmid pRiA4b ORF-3-like protein [Acaryochloris marina MBIC11017] Length = 654 Score = 99.0 bits (245), Expect = 1e-18, Method: Composition-based stats. Identities = 52/306 (16%), Positives = 105/306 (34%), Gaps = 37/306 (12%) Query: 51 LTGSTPKREYINSPRKKPTT-----LKWL-ISEYRKSAHWGSLAVNSRISFESYFDQIIR 104 L R +P T L+W+ + E+ +S + N+ ++E Q++ Sbjct: 11 LADQAATPIDAARSRTQPATTPLADLRWMRVEEFLRS---REIRPNTHKAYERDLKQLMD 67 Query: 105 KSGDFDYRKITTKHIRSGVESRKHTP---------SSAIQFLTSMRVLFKWAVRQEYVAI 155 + +IT++ + K P ++ + L +++ FKW ++Y+ Sbjct: 68 -WTPKGWHEITSRDLDRYKTYLKTEPNHRGKLRKCATINRSLAALQSFFKWLTVRDYITK 126 Query: 156 NPCLSVERPKRKTEGIRPWTKEDMQQ-FKSFWSEGSQPRLAFEF--LLYSGLRCSDSCRA 212 NP L +E+ K + ++++++ +++ G L+ GLR S+ Sbjct: 127 NPALLLEKLKSDPLLPQEFSQDEVDNLYQAICDRGFHSFRDRALLHLIDHGLRASEIQGL 186 Query: 213 GVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTP----------IGKETFFI----N 258 V I+ K ++ +V L + + F+ N Sbjct: 187 NVGDYDGQRVHIREAKADSVGSVPLLSKARRAFDQYKQWREQQGEVLEDESPLFVSHSNN 246 Query: 259 NDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVD 317 + Q++ FKA A A V N H R AT + K+ Sbjct: 247 SKGQRLQYWGIYKIFKAIADIAEVENAHPHRGRHTLATRLVMKDMDSILARKVTRHKSEQ 306 Query: 318 QAETYT 323 Y+ Sbjct: 307 SFVRYS 312 >gi|222087381|ref|YP_002545918.1| tyrosine site-specific integrase/recombinase protein [Agrobacterium radiobacter K84] gi|221724829|gb|ACM27985.1| tyrosine site-specific integrase/recombinase protein [Agrobacterium radiobacter K84] Length = 319 Score = 99.0 bits (245), Expect = 1e-18, Method: Composition-based stats. Identities = 49/275 (17%), Positives = 91/275 (33%), Gaps = 35/275 (12%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTK-----HIRSGVESRKHTPSSAIQFLTS 139 AVN+ S+E D + + R SG+ + PSS + L++ Sbjct: 21 RGAAVNTLQSYERDLDDLHSFLSERSVRLTEAGSNDLGAYLSGLSRQGFKPSSQARRLSA 80 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF----KSFWSEGSQPRL- 194 MR +K+ + +P ++ PK+ + E++ + + +E S +L Sbjct: 81 MRQFYKFLYAEGLRTDDPTGILDAPKKGRALPKTMGVEEVTRLLTQAEKEAAEESPDQLQ 140 Query: 195 ------AFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLLAM 247 E L +G+R S+ + L F + K V L + L Sbjct: 141 RLRMLVLLELLYATGMRVSELVTLPAKVLDQEGRFLMIRGKGNKERLVPLSQSAIAALKT 200 Query: 248 -------------TPIGKETFFINNDKQK--MNATQFSIWFKAKATKAGVN---KSAHGV 289 P + + ++ + F+ K A +AG+ S H + Sbjct: 201 YGKLQTQVAANTKQPAPESAWLFPAASKQGYLPRQVFARDLKDLAIRAGLTPSLISPHVM 260 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 R A+ GA + G + + YT Sbjct: 261 RHAFASHLLANGADLRVVQELLGHSDISTTQIYTH 295 >gi|148642488|ref|YP_001273001.1| phage integrase family integrase/recombinase [Methanobrevibacter smithii ATCC 35061] gi|148551505|gb|ABQ86633.1| integrase-recombinase protein, phage integrase family [Methanobrevibacter smithii ATCC 35061] Length = 302 Score = 99.0 bits (245), Expect = 1e-18, Method: Composition-based stats. Identities = 44/279 (15%), Positives = 90/279 (32%), Gaps = 35/279 (12%) Query: 76 SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQ 135 Y S + + N+ ++ S + K S ++ Sbjct: 31 ESYITSLKNNNYSQNTIKTYSSIIHKFTTYL-KNQIAIYNEKEFIKYFNSYIL----YLK 85 Query: 136 FLTSMRVLFKWAVR---QEYVAINPC---LSVERPKRKTEGIRPWTKEDMQQFKS--FWS 187 + ++ + + V ++++ N S+ PKR T+++++Q W Sbjct: 86 QVKNVSQNYIYLVTVVVKKFLEFNNIHFLDSITTPKRIKSPPNFLTQKEVKQLLDSITWD 145 Query: 188 EGS----------QPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITV 235 E S + +L L SGLR S+ V ++ + SI K + + Sbjct: 146 ENSDSDFRIITKLRDKLIVTLLYSSGLRVSELINLSVDNVNFEGKQLSI-VGKNNSRVI- 203 Query: 236 ELPDG-----FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHG 288 L D K L +N + + K ++G+ K + H Sbjct: 204 -LLDESTKQLIQKYLEKRTQKSNYLVVNKSGNPLTPRYVQLMIKKYGNESGIEKKITPHI 262 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 +R AT + G + G + + Y++ A+ Sbjct: 263 LRHSYATHLFEQGVNIKIIQQLLGHSNLSTTQIYSQDAN 301 >gi|327188713|gb|EGE55912.1| tyrosine site-specific integrase/recombinase protein [Rhizobium etli CNPAF512] Length = 317 Score = 99.0 bits (245), Expect = 1e-18, Method: Composition-based stats. Identities = 50/274 (18%), Positives = 87/274 (31%), Gaps = 34/274 (12%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTK-----HIRSGVESRKHTPSSAIQFLTS 139 A N+ S+E D I R + + S+ PSS + L + Sbjct: 20 RGAAANTLQSYERDLDDIRSFLNGRSIRLTEAASADLSAYLASLASQGFKPSSQARRLAA 79 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-------SEGSQP 192 MR +K+ + +P ++ PK+ + E++ + S + G Sbjct: 80 MRQFYKFLYAEGIRTDDPTGVLDAPKKGRPLPKTMGVEEVGRLLSQAQTEADDPAPGQLQ 139 Query: 193 RLAFEFL----LYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLL-- 245 RL L +G+R S+ L F + K V L +K L Sbjct: 140 RLRMLALLELLYATGMRVSELVSLPAGVLDQEGRFLMIRGKGNKERLVPLSQSAIKALKS 199 Query: 246 ----------AMTPIGKETFFINNDKQK--MNATQFSIWFKAKATKAGVN---KSAHGVR 290 A + F + ++ + F+ K A +AG+ S H +R Sbjct: 200 YGRLLAAENAAAKEPQESPFLFSAASKEGYLPRQVFARDLKNLAIRAGLTPSLISPHVMR 259 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK 324 A+ GA + G + + YT Sbjct: 260 HAFASHLLANGADLRVVQELLGHSDISTTQIYTH 293 >gi|323175010|gb|EFZ60625.1| integrase [Escherichia coli LT-68] Length = 330 Score = 99.0 bits (245), Expect = 1e-18, Method: Composition-based stats. Identities = 44/235 (18%), Positives = 85/235 (36%), Gaps = 14/235 (5%) Query: 94 SFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFLTSMRVLFKWAVRQ 150 S+ ++IR+ GD +T K + + PSS + L + +F + Sbjct: 81 SYRVRLGKVIREMGDPRASHMTRKFMLEYRSEKLQAGLMPSSINRDLCVLSTMFTVLIEA 140 Query: 151 E-YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDS 209 E + NP + + K + + + ++++Q EG R+A L +G R ++ Sbjct: 141 EVFHNANPVRGIRKLKVQNTEMAFLSDDEIEQLLERL-EGDARRVAI-LCLSTGARWREA 198 Query: 210 CRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF 269 +H+ N + K G +V + D + L+ G +++ +F Sbjct: 199 SELRGEHIVGNRVTFFNTKNGKSRSVPVADSVVPLIKTRRTGLLY--------QVDYLEF 250 Query: 270 SIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 + ++ H +R AT G L G T+ Q TY Sbjct: 251 REILQEVKPDLPKGQATHVMRHTFATHFMMNGGNIVTLQRILGHATIQQTMTYAH 305 >gi|86747659|ref|YP_484155.1| tyrosine recombinase XerD [Rhodopseudomonas palustris HaA2] gi|86570687|gb|ABD05244.1| tyrosine recombinase XerD subunit [Rhodopseudomonas palustris HaA2] Length = 347 Score = 99.0 bits (245), Expect = 1e-18, Method: Composition-based stats. Identities = 41/287 (14%), Positives = 86/287 (29%), Gaps = 41/287 (14%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFD-----YRKITTKHIRSGVESRKHTPSSAIQFLTS 139 + N+ ++ + G + + +++R +S + L++ Sbjct: 49 QGASANTLDAYRRDLADLSHYLGRRRKSIASADTEALRGYLADLDTRGFASTSVARRLSA 108 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS------------ 187 +R LF++ + + +P + PKR + + D+ + Sbjct: 109 LRHLFRFLLSERIRVDDPAAILSGPKRGRGLPKVLSIADVDRLLGCARQEADAAEGAAGL 168 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFMKLLA 246 ++ E L +GLR S+ + + + K V L + Sbjct: 169 RAARLYCLLEVLYATGLRVSELVALPRTAARGDARMIVVRGKGDKERLVPLNGSSKAAMT 228 Query: 247 M-------------------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---K 284 P K F + + F+ K A +AG+ Sbjct: 229 RYLATAAAAEKAAAGGKKTAAPASKWLFPSFGESGHLTRQHFARDLKELAARAGLPPRLV 288 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIR 330 S H +R A+ GA + G + + YT DR++ Sbjct: 289 SPHVLRHAFASHLLHNGADLRIVQTLLGHSDISTTQIYTHVVEDRLK 335 >gi|253579255|ref|ZP_04856525.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251849353|gb|EES77313.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 350 Score = 99.0 bits (245), Expect = 1e-18, Method: Composition-based stats. Identities = 51/296 (17%), Positives = 94/296 (31%), Gaps = 30/296 (10%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133 I Y + L NS + + + I+ G +IT I + + S Sbjct: 62 IQVYFEDKK-NELKENSIRNKQHMMNKHIVPYFGTRKMNEITPAEIIQWQNAIQEKGYSK 120 Query: 134 IQ---FLTSMRVLFKWAVRQEYVAINPCLSVER-PKRKTEGIRPWTKEDMQQFKSFWSEG 189 + LF A + + NPC V++ K + WTK + +F + G Sbjct: 121 TYERMIQNQLNALFNHAQKIYNLKENPCKKVKKMGKSDANKLEFWTKAEYDRFIAGIEPG 180 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQ-------------KTGTII- 233 S+ L FE L ++G+R + + N+ I KT + Sbjct: 181 SEDYLIFEILFWTGIREGELLALSLSDFDMSGNLLHINKTYNRIKKRDVIDTPKTENSVR 240 Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKF 292 T+++P+ + + F + + A K GV H +R Sbjct: 241 TIDIPNFLKEEVQEYAKKHYGFPEDQRLFPIVARTLQKRLKKYEALTGVKPIRVHDIRHS 300 Query: 293 SATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSVVDSDD 347 G + G K + TY L ++++ ++D+ Sbjct: 301 HVAYLIYQGVEPLIIKERLGHKDIQMTLNTYGH------LYPSQQKKVAEMLDNKR 350 >gi|149915599|ref|ZP_01904125.1| tyrosine recombinase [Roseobacter sp. AzwK-3b] gi|149810491|gb|EDM70334.1| tyrosine recombinase [Roseobacter sp. AzwK-3b] Length = 304 Score = 99.0 bits (245), Expect = 1e-18, Method: Composition-based stats. Identities = 51/296 (17%), Positives = 91/296 (30%), Gaps = 32/296 (10%) Query: 63 SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII--------RKSGDFDYRKI 114 SP + WL ++ A N+ ++ + G +I Sbjct: 3 SPAARDALQGWLETQ----KALKGAADNTLEAYGRDVAGFLTFMTGHKGEMQGIAPLTRI 58 Query: 115 TTKHIRSGVESRKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171 +R+ + + P S + L++++ ++W +E LS PK + + Sbjct: 59 GVTDMRAWMAFIRGEDVGPRSLARKLSAVKSFYRWLAEREGFDATAVLSARAPKFQRKLP 118 Query: 172 RPWTKEDMQQFKSFWSE-------GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224 RP E Q ++ + L GLR S++ L Sbjct: 119 RPLAPEAAQDLIDTLELQSATPWVAARDQAVVTLLYGCGLRISEALGLTGGDLPMGEALR 178 Query: 225 KTQKTGTIITVELPDGFMKLLAMTPI-------GKETFFINNDKQKMNATQFSIWFKAKA 277 T K G V + +A F +N +A Sbjct: 179 ITGKGGKERIVPVIAPARDAVAHYARLCPFDLRPGTPLFRGMRGGPLNPRAVQKVTEAAR 238 Query: 278 TKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 T+ G+ +A H +R AT +AG + G ++ + YT D RL Sbjct: 239 TQLGLPATATPHAMRHSFATHLLNAGGDLRAIQELLGHASLSTTQAYT-AVDTSRL 293 >gi|251772880|gb|EES53439.1| putative phage integrase [Leptospirillum ferrodiazotrophum] Length = 337 Score = 99.0 bits (245), Expect = 1e-18, Method: Composition-based stats. Identities = 62/322 (19%), Positives = 110/322 (34%), Gaps = 23/322 (7%) Query: 16 TRHGKIIYYFRKG-HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74 R I++ GRR R A L + K+ L W Sbjct: 4 KRKDSPIWWVSFTVRGRRTRCSAGTTD---KAQALELHDRWKSEAWREISLKEKPKLGW- 59 Query: 75 ISEYRKSAHWGSL--AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP-- 130 + W + A + E++ I +I + I S +K T Sbjct: 60 ---KEAALKWLEVKSAKATIHDDEAHLLFIQNFWKGKKLSEIGKEEIDSLKVKKKATGVS 116 Query: 131 -SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 ++ + L+ +R + + + + ++ P VE + IR TKE+ + S+ E Sbjct: 117 NATVNRMLSLVRAILRMSFKLGWIESVP--PVELMPEPKKRIRWLTKEEAAKLLSYLPEH 174 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQN----NIFSIKTQKTGTIITVELPDGFMKLL 245 Q R+A F L +GLR + + K I + LPD + LL Sbjct: 175 -QERIAR-FALLTGLRQGNILGLEWSQVDLVRKVLWIHADQAKGRKAIGIPLPDAAVTLL 232 Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATA 304 + ++N ++ ++ KAG+ N H +R A+ G Sbjct: 233 RELSGQHPQWVFTYKGNRINQVN-TLAWRKALKKAGIENFRWHDLRHCWASWHIQDGTPL 291 Query: 305 HELMATYGWKTVDQAETYTKGA 326 + L GW+++D Y+ A Sbjct: 292 YALKELGGWESMDMVMRYSHMA 313 >gi|170024532|ref|YP_001721037.1| integrase family protein [Yersinia pseudotuberculosis YPIII] gi|169751066|gb|ACA68584.1| integrase family protein [Yersinia pseudotuberculosis YPIII] Length = 335 Score = 99.0 bits (245), Expect = 1e-18, Method: Composition-based stats. Identities = 42/285 (14%), Positives = 80/285 (28%), Gaps = 26/285 (9%) Query: 56 PKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT 115 K + + L L+S + + + +R + I + GD Sbjct: 44 QKDQVVEVSVSNTLKLSNLVSRWYEMHGQTLTSGKTRKVK---LEAICERLGDPLVTDFD 100 Query: 116 TKHIRSGVESR-----------KHTPSSAIQFLTSMRVLFKWAVRQE-YVAINPCLSVER 163 E R ++ + + +R +F R ++ NP + + Sbjct: 101 KNAFAVYREQRLNGKWQTKGRAAPKQATVNREYSYLRAVFSELKRLGEWMGDNPLDGLRQ 160 Query: 164 PKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQNNI 221 K + + ED+++ E L L +G R S++ L + Sbjct: 161 FKEGDQELAFLYPEDIKRLLVACDESENKDLGNVVRICLATGARWSEAQGLSQSQLMPSR 220 Query: 222 FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281 + K+ TV + P + + F F K A + Sbjct: 221 VTFTQTKSKRNRTVPISKRL---YDRLPKRRGSMF------SSCYDAFKHALKRSAIELP 271 Query: 282 VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 + H +R A+ G L G T+ Y A Sbjct: 272 KGQRTHVLRHTFASHFMMGGGNILVLQQILGHSTILMTMRYAHFA 316 >gi|56708875|ref|YP_164918.1| phage integrase family site specific recombinase [Ruegeria pomeroyi DSS-3] gi|56680560|gb|AAV97225.1| site-specific recombinase, phage integrase family [Ruegeria pomeroyi DSS-3] Length = 400 Score = 99.0 bits (245), Expect = 1e-18, Method: Composition-based stats. Identities = 49/273 (17%), Positives = 92/273 (33%), Gaps = 24/273 (8%) Query: 58 REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK 117 + + TL +I +Y + V++R + ++ K ++I Sbjct: 86 EDRTGVEVETKPTLGDVIPDYIE----KHAKVHNRDWKRK--EALLAKFAALHVKRIDEI 139 Query: 118 HIRSGVES----RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173 V++ K P SA + L ++ L W V + + +P ++ ++ R Sbjct: 140 KRADVVKACDLIHKSAPVSANRALAHLKHLMGWCVERGMIDASPIAGMKPLSKERSRERV 199 Query: 174 WTKEDMQQFKSFWS-EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK----TQK 228 T +++ + EG + L+ SG R ++ L K Sbjct: 200 LTDDELGALWTACDAEGYPFGDCMKLLILSGQRRAEVAEMRWTELDLEKRLWTLPSQRAK 259 Query: 229 TGTIITVELPDGFMKLLAMTPI--GKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS- 285 G TV + D + +L P G + F K ++ F K + KA + Sbjct: 260 NGRQHTVPITDAMIDVLRRVPRFLGSDYVFTTTGKSPVS--GFG-RLKDRLDKALPEGTE 316 Query: 286 ---AHGVRKFSATISADAGATAHELMATYGWKT 315 H +R+ +T A G A KT Sbjct: 317 PWIIHDLRRTMSTNMAMLGVPQPVTEALLNHKT 349 >gi|49474798|ref|YP_032840.1| integrase /recombinase xerD [Bartonella quintana str. Toulouse] gi|49240302|emb|CAF26784.1| Integrase /recombinase xerD [Bartonella quintana str. Toulouse] Length = 315 Score = 99.0 bits (245), Expect = 1e-18, Method: Composition-based stats. Identities = 36/285 (12%), Positives = 88/285 (30%), Gaps = 33/285 (11%) Query: 73 WLISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH-----IRSGVESR 126 +I + + + + ++ +++ + + + + S + Sbjct: 5 AVIDHFLEMMSAERGASTHTLAAYQHDLQWAQDELSLHSVSLFSAQKEDLIGLLSLMHIL 64 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF- 185 SS + L+++R +++ + +P ++ P++ + +++ + + Sbjct: 65 GFAASSQARRLSTLRQFYRFLYAEGMRVDDPSHDLDAPRQGRPLPKVISEDGVTKLLDLA 124 Query: 186 -------------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI 232 + ++ E L +GLR S+ VQ ++ +SI + G Sbjct: 125 QLEVNQADYGSKDHFRALRLQVLIEMLYATGLRISELVSLPVQAVRGKEYSILVRGKGKK 184 Query: 233 ITVELP---------DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIW-FKAKATKAGV 282 + L F + A Q K A +AG+ Sbjct: 185 ERIVLLSKKACQVLSQWLSLRDQRKDAASLYLFPARSETGYIARQVVARELKGLAKRAGI 244 Query: 283 NKS---AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 S H +R A+ GA + G + + YT Sbjct: 245 KSSGFSPHVLRHAFASHLLQNGADLRAVQHLLGHSDIATTQIYTH 289 >gi|237736397|ref|ZP_04566878.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Fusobacterium mortiferum ATCC 9817] gi|229421439|gb|EEO36486.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Fusobacterium mortiferum ATCC 9817] Length = 255 Score = 99.0 bits (245), Expect = 1e-18, Method: Composition-based stats. Identities = 37/243 (15%), Positives = 89/243 (36%), Gaps = 9/243 (3%) Query: 103 IRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE 162 I K + + I +H++ +++ ++ + +F +A++ + + + V+ Sbjct: 14 IEKLHNMKIKDIKARHLQEAIDNCSKGQATKKKIKFLFGQMFAYAMQNDIITKDYSEFVD 73 Query: 163 RPKRKTE-GIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI 221 K E P++ ++++ + ++YSG R + +++ Sbjct: 74 IGKASEESKREPFSNKEIELLWKHIDDIEFIDTIL-IMIYSGFRIGELLELETKNIDLVN 132 Query: 222 FSIKTQ-KT--GTIITVELPDGFMKLL-AMTPIGKETFFINNDKQKMNATQFSI-WFKAK 276 ++ KT G V + L+ + IN +KM + F Sbjct: 133 MTMTGGLKTEAGKNRLVPIHPKIFPLIEKRYNKDNQYLIINFKGKKMKYDNYYKEKFIPI 192 Query: 277 ATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYT-KGADRIRLGIK 334 + + H R AT+ ++A A A + G ++ E YT K + +R ++ Sbjct: 193 MEQLNMEHRPHDCRHTFATLLSNANANATAIKKMIGHESYATTEKIYTHKDIEELRKNVE 252 Query: 335 NSR 337 + Sbjct: 253 LIK 255 >gi|284990058|ref|YP_003408612.1| integrase family protein [Geodermatophilus obscurus DSM 43160] gi|284063303|gb|ADB74241.1| integrase family protein [Geodermatophilus obscurus DSM 43160] Length = 308 Score = 99.0 bits (245), Expect = 1e-18, Method: Composition-based stats. Identities = 42/294 (14%), Positives = 94/294 (31%), Gaps = 20/294 (6%) Query: 65 RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRS 121 R L ++ S +VN++ + +++ +I + + + Sbjct: 9 RAMEQEWAALRRDFAISMRAEGKSVNTQRVYLRAVNRLGAWCVDMQRGGPTRIRRQDVMA 68 Query: 122 GVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179 + T P + +++ F W VR+E + +P + P + T+E + Sbjct: 69 FLADMSETWSPGTRNLVYRALQQFFGWMVREEEIEKSPMAGMRAPTAPETPVPVLTEEQL 128 Query: 180 QQFKSFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235 +Q + G + +G R + + + SI+ G+ I V Sbjct: 129 RQLLATCCGKTFTGRRDNALIRLFTDTGCRLGELSGLKFEDVDLTDQSIRVLGKGSRIRV 188 Query: 236 ---------ELPDGFMKLLAMTPIGK-ETFFINNDKQKMNATQFSIWFKAKATKAGV-NK 284 + + E + D+ + + ++ + + + G+ N Sbjct: 189 VPFGARTAQAMGRYLRVRERSAHASRPELWLAEKDRGVLGYSGVTLMLRRRGRQIGIANL 248 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRR 338 AH R +A G + +LM GW++ Y R + R Sbjct: 249 HAHQFRHTAAHRWGANGGSETDLMRLMGWRSPQMLRRYAASTADERARDAHRRM 302 >gi|148264912|ref|YP_001231618.1| phage integrase family protein [Geobacter uraniireducens Rf4] gi|146398412|gb|ABQ27045.1| phage integrase family protein [Geobacter uraniireducens Rf4] Length = 279 Score = 99.0 bits (245), Expect = 1e-18, Method: Composition-based stats. Identities = 37/263 (14%), Positives = 89/263 (33%), Gaps = 17/263 (6%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKHT 129 L + + ++ S+ + + D ++ RK Sbjct: 3 DLRRRMMEDLQLAGYSARTQKSYLDAVRGLAKYYMRSPDLLSEDDVRGFFLHLLKVRKAA 62 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 S+ +L+ ++ F+ +++++ + +P + ++++++ Sbjct: 63 RSTFTIYLSGIKFFFETTLQRKW----SVFGITKPAKSKRLPVVLSRKEVRTLLKSIK-N 117 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTIITVELP----DGFMK 243 + ++A + GLR S+ R V+ + + ++ K V LP + Sbjct: 118 PRVKMALTIIYACGLRLSEGARLKVKDIDSGRKLLWVRDGKGMKDRCVPLPKRPLELLQT 177 Query: 244 LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADAG 301 + G E F + D +N F+ K+ + K+A H +R AT + G Sbjct: 178 HYRLFGAGSEYLFPSGDG-HINICTIQTAFRVAVRKSDIGKTATVHTLRHSYATHLLENG 236 Query: 302 ATAHELMATYGWKTVDQAETYTK 324 + L G ++ Y Sbjct: 237 EDSATLKEILGHSSITTTNIYLH 259 >gi|289207303|ref|YP_003459369.1| tyrosine recombinase XerC [Thioalkalivibrio sp. K90mix] gi|288942934|gb|ADC70633.1| tyrosine recombinase XerC [Thioalkalivibrio sp. K90mix] Length = 316 Score = 98.6 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 41/291 (14%), Positives = 89/291 (30%), Gaps = 21/291 (7%) Query: 52 TGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF-- 109 +G P E + ++ R + ++ +++ + R Sbjct: 3 SGPNPPPEAAAETTAHDADIAAFLAHLR---DVRGHSPHTIKAYQRDLAHLRRLHSGPWD 59 Query: 110 DYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169 + + I + + H P S +FL++ R F V + NP + P+ Sbjct: 60 QLKAADMRRIAGQLARQGHHPRSIQRFLSAARGFFAHQVEHRRMPANPAAGLRGPRAGRA 119 Query: 170 GIRPWTKEDMQQFKSFWS-----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224 R + QQ + ++ + E L SGLR S+ + L + + Sbjct: 120 LPRDLDVDQTQQALTPAEDLDPILAARDQAMLELLYSSGLRLSELTGLDLTDLDLDAGLV 179 Query: 225 KTQKTGTI-ITVELPDGFMKLLAM--------TPIGKETFFINNDKQKMNATQFSIWFKA 275 + G +V + L F++ Q++ Sbjct: 180 RVLGKGRRERSVPVGRMARDALRNWLKCRGDWAAPDAHAVFVSRRGQRIGNRAVQRRVAE 239 Query: 276 KATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 +AG++ H +R A+ ++ + G ++ + YT Sbjct: 240 AGRRAGLDVRLHPHRLRHAFASHLLESSGDLRAIQELLGHANLETTQIYTH 290 >gi|254459215|ref|ZP_05072637.1| phage integrase [Campylobacterales bacterium GD 1] gi|207084108|gb|EDZ61398.1| phage integrase [Campylobacterales bacterium GD 1] Length = 347 Score = 98.6 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 42/272 (15%), Positives = 89/272 (32%), Gaps = 29/272 (10%) Query: 88 AVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVES--RKHTPSSAIQFLTSMRVLF 144 S+ ++ +++ I G +I I + +K + S L V+F Sbjct: 73 RPLSQKDYKFIYERHIKPIFGKRIIDEIKPSEIATWQSKLLKKLSTKSLTMILAVFNVMF 132 Query: 145 KWAVRQEYVAINPCLSVERPKRKT-EGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSG 203 A+ E +A NP +++PK + I P+ ++++ + E + R F ++G Sbjct: 133 NDALADELIARNPMSLIKKPKNISVNEILPFKQDEIFKLLGHIQE--RMRAVFAIGFFTG 190 Query: 204 LRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVE--------------LPDGFMKLLAM 247 +R + + NNI ++ K + ++ L L Sbjct: 191 MRTGELVALKWSDIDFENNIIKVRRAKRQNVESLPKTKSSIRDIDIIDILLPYLQNHLKF 250 Query: 248 TPIGKETFFINNDKQKMNAT---QFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATA 304 E F + K+ + W ++ + +R A++ G Sbjct: 251 KLDDSEYMFNSLHKRPFTCFHSISRTYWRPIFEKIDIAYRNPYQMRHTFASMMISNGEDI 310 Query: 305 HELMATYGWK----TVDQAETYTKGADRIRLG 332 + G T+ Y + D+ R Sbjct: 311 LWVSKMLGHTNSAITLTMYARYIENKDKKRGA 342 >gi|152993773|ref|YP_001359494.1| phage integrase family site specific recombinase [Sulfurovum sp. NBC37-1] gi|151425634|dbj|BAF73137.1| site-specific recombinase, phage integrase family [Sulfurovum sp. NBC37-1] Length = 280 Score = 98.6 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 39/209 (18%), Positives = 80/209 (38%), Gaps = 10/209 (4%) Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV--ERPKRKTEGIRPWTKEDMQQFKS 184 K++ + ++ L+++R K+ Q + P + E K +P ++ +++ + Sbjct: 64 KNSKKTIVKKLSAVRSFVKYLEDQCNI---PVKLIADESIKVPQSLPKPIEEQYIEEVLA 120 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244 + +L L GLR S+ ++ ++ I K + + L KL Sbjct: 121 --KANVEEKLLISMLYGLGLRISELSGLKLEDIKGEWIQIH-GKGNKVRELPLMKSLQKL 177 Query: 245 L--AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGA 302 + M G + + MNA Q K G+ + H +R AT + GA Sbjct: 178 IGVYMDQNGPKRYLFEKGNAPMNAAQLRYKLTKLFKKEGLKVTPHQLRHSFATHLLNHGA 237 Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRL 331 ++ G +T+ + YTK ++ Sbjct: 238 RIADVSELLGHETMATTQVYTKLGSVKKM 266 >gi|58039205|ref|YP_191169.1| site-specific tyrosine recombinase XerC [Gluconobacter oxydans 621H] gi|58001619|gb|AAW60513.1| Site-specific recombinase, integrase/recombinase RipX, XerC [Gluconobacter oxydans 621H] Length = 321 Score = 98.6 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 45/257 (17%), Positives = 82/257 (31%), Gaps = 31/257 (12%) Query: 103 IRKSGDFDYRKITT--KHIRSGVESRKHTPSSAI-------QFLTSMRVLFKW-AVRQEY 152 + G + H + E P+SA + ++++R F++ +R + Sbjct: 53 LADLGKLSLADLRAWLAHETARSEQPTRRPTSADSRARSRARHVSALRSFFRYLGLRHDL 112 Query: 153 VAINPC-LSVERPKRKTEGIRPWTKEDMQQFKSFWS-------EGSQPRLAFEFLLYSGL 204 NP + P+ K RP ++ + S + R F L +GL Sbjct: 113 --SNPAPSLLATPRTKKRLPRPLGEDAARAAAEGISDDAETSLAALRDRALFTLLYGTGL 170 Query: 205 RCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDGFMKLL------AMTPIGKETFF 256 R ++ ++ L K G V L M+ L +P F Sbjct: 171 RIGEALSLDIRDLTNAGQNMLRVVGKGGKERLVPLLPAVMEALESWKAAHPSPTPDAPLF 230 Query: 257 INNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWK 314 ++N + G+ + H +R AT + GA + G Sbjct: 231 CGVRGGRLNPGVAQRAMRTWRKGEGLPDSATPHALRHSFATHLMEGGADLRTIQELMGHA 290 Query: 315 TVDQAETYTKGADRIRL 331 ++ + YT AD L Sbjct: 291 SLSTTQAYT-LADEKHL 306 >gi|153810539|ref|ZP_01963207.1| hypothetical protein RUMOBE_00920 [Ruminococcus obeum ATCC 29174] gi|149833718|gb|EDM88799.1| hypothetical protein RUMOBE_00920 [Ruminococcus obeum ATCC 29174] Length = 332 Score = 98.6 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 43/265 (16%), Positives = 93/265 (35%), Gaps = 14/265 (5%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESR 126 + +++ + S + ++ + ++ ++I + + ITT IR + E+R Sbjct: 54 WQKILNTFLASKRIENCSLGTLDRYKECVTKLITSL-NKRLQDITTNDIRYYLAMYQETR 112 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 K + S + F W + Y+ INP +++ K + +P+T + + + Sbjct: 113 KISISYMDTIRRYLSSFFAWISDEGYININPMRRLKKIKVPQKIKKPFTPAEREHLR-CS 171 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDG---- 240 + + EFL + R + R + + N I +K V L D Sbjct: 172 ARCQRDIAIMEFLYSTAARIGEVVRLDRRDIDWNRNEIIIYGEKGKKERKVYLTDECAYH 231 Query: 241 FMKLLAMTPIGKETFFINNDKQK--MNATQFSIWFKAKATKAGVNKSAHGVRKFSATISA 298 K L F+++ + + + K ++ H R+ T + Sbjct: 232 LRKYLLSRNDANPALFVSSKQPHTRLGKQAIQSMLRTLGQKTDIHAHPHKFRRTLLTDAG 291 Query: 299 DAGATAHELMATYGWKTVDQAETYT 323 + G E+ G + D Y Sbjct: 292 NRGIPLQEIQHYAGHEKPDTTMMYV 316 >gi|257870348|ref|ZP_05650001.1| integrase [Enterococcus gallinarum EG2] gi|257804512|gb|EEV33334.1| integrase [Enterococcus gallinarum EG2] Length = 377 Score = 98.6 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 48/317 (15%), Positives = 118/317 (37%), Gaps = 38/317 (11%) Query: 43 FIPAYMSALTGSTPKREYINSPRKKP---TTLKWLISEYRKSAHWGSLAVNSRISFESYF 99 F + L + + ++ P +P T + + + + + ++ ++ + E F Sbjct: 45 FRTQREARLAIADLELNGLSKPESEPQMIHTYEQIYNLWYEEYK-TTVKASTLLKTERVF 103 Query: 100 -DQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPC 158 + I+ G+ + I ++ + A + ++F +A+R + + +NP Sbjct: 104 KNHILPAFGNKPIQDIKPMDAQNQMNIWHKKLVRASMVMNYAGLIFDYAIRMQLINMNPT 163 Query: 159 LSVERPKRKTEGIR-----PWTKEDMQQFKSFWSEGS--QPRLAFEFLLYSGLRCSDSCR 211 +++P RK + K+++++F + + + + F L ++G+R +S Sbjct: 164 KVIKKPVRKESVREDKDMNFYDKDELKKFMAALENNNNFRAFVYFRLLAFTGMRKGESLA 223 Query: 212 AGVQHLQNN---------------IFSIKTQKTGTIIT-VELPDG----FMKLLAMTPIG 251 + I+T KT + I + + D + +P G Sbjct: 224 LKWSDIDLEKQTLYINKAVSRSATGLYIQTPKTPSSIRRISIDDKTVSILQEYKKESPDG 283 Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHELM 308 F + D ++ + W+ + S HG R A++ +AGA+ ++ Sbjct: 284 --LVFQSEDGGILSPAKPRKWYLTAMKNLPDDFKQISIHGFRHTHASLLFEAGASIKDVQ 341 Query: 309 ATYGWKTVDQA-ETYTK 324 + G + + YT Sbjct: 342 SRLGHSDIQTTMDVYTH 358 >gi|167772802|ref|ZP_02444855.1| hypothetical protein ANACOL_04184 [Anaerotruncus colihominis DSM 17241] gi|167665280|gb|EDS09410.1| hypothetical protein ANACOL_04184 [Anaerotruncus colihominis DSM 17241] Length = 402 Score = 98.6 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 57/293 (19%), Positives = 91/293 (31%), Gaps = 38/293 (12%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH 128 TL + + + +L N+ S+E + I G+ ++T I+ KH Sbjct: 70 TLGEWLDRWMEDYGAATLRPNTLRSYEQFIRCYIKPYLGNKIVSRVTRMDIQKLYRKLKH 129 Query: 129 TPS-----------SAIQFLTSMRVLFKWAVRQE---YVAINPCLSVERPKRKTEGIRPW 174 S L +L + E +A NP PK + Sbjct: 130 EGRVREHPEHGHELSDTMVLRIHAMLHRCLKDAEAAHVIARNPTDGAVVPKANHRPKQIL 189 Query: 175 TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN--------------- 219 TKE M+ F + R F L +GLR + C Q Sbjct: 190 TKEQMETFLAAVERNEIWRDFFYTELTTGLRRGEICGLMWQDFDEKAGTLKILRSVNVPK 249 Query: 220 -NIFSIKTQKTGT-IITVELPDGFMKLLAMTPIGKETFFIN----NDKQKMNATQFSIWF 273 I KT T+ LP ++ L + +I ++ + + W Sbjct: 250 AGELEIGETKTSQGRRTIRLPPSTVQRLRERKQHAVSQWIFPEPLAPEKPVRPSAAYYWM 309 Query: 274 KAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTK 324 K +AG+ H +R AT + +G A L G +TYT Sbjct: 310 KRILREAGLPTIRFHDLRHTFATHALTSGVDAKTLSGILGHTNASFTLDTYTH 362 >gi|320532036|ref|ZP_08032926.1| site-specific tyrosine recombinase XerC [Actinomyces sp. oral taxon 171 str. F0337] gi|320135749|gb|EFW27807.1| site-specific tyrosine recombinase XerC [Actinomyces sp. oral taxon 171 str. F0337] Length = 307 Score = 98.6 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 43/295 (14%), Positives = 94/295 (31%), Gaps = 33/295 (11%) Query: 69 TTLKWLISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSG---------DFDYRKITTKH 118 T L++ YR L+ ++ ++ ++ G D + Sbjct: 3 RTRADLLASYRSYLALQRDLSGHTVRAYLVDVSDLLSFLGVGEKDTEPVDPALATLDLAD 62 Query: 119 IRSGVESRK---HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175 +R + + H+ ++ + S+R WA +A + + P+ T Sbjct: 63 LRDWLAAMAASGHSRATLARRSASVRTFSSWAFEAGLLASDVAARLRAPRVDNRLPGVLT 122 Query: 176 KEDMQQFKSFWSEGSQPR--------LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ 227 + Q ++ + R E L +G+R S+ V L ++ +++ Sbjct: 123 TQQASQLLKTAADLASDRQVLAVRDLAIIETLYATGVRVSELIGLDVADLDHSQRTLRVL 182 Query: 228 KTGTIIT-----VELPDGFMKLLA-----MTPIGKETFFINNDKQKMNATQFSIWFKAKA 277 G + + L F+ ++++ Sbjct: 183 GKGRKERTVPYGLPAARALEEWLRRRGEICAVDAGGALFLGARGRRIDPRAVRDVVHRLC 242 Query: 278 TKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIR 330 + A V + HG+R +AT GA + G ++ + YT A+R+R Sbjct: 243 SAAQVPDLGPHGLRHSTATHVLGGGADLRSVQELLGHSSLATTQRYTHVSAERLR 297 >gi|119715851|ref|YP_922816.1| phage integrase family protein [Nocardioides sp. JS614] gi|119536512|gb|ABL81129.1| phage integrase family protein [Nocardioides sp. JS614] Length = 368 Score = 98.6 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 54/287 (18%), Positives = 94/287 (32%), Gaps = 40/287 (13%) Query: 90 NSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVE---SRKHTPSSAIQFLTSMRVLFK 145 ++ ++ SY D+ I G KI I+ V +P+S ++ T + +F+ Sbjct: 82 STLAAYRSYLDRHFIPTFGRRPMGKILPSEIQRWVTTATEHGLSPASVRKYHTMLHSVFE 141 Query: 146 WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLR 205 A+R V NPC+ E PK + R T E+ + E Q RL E + +GLR Sbjct: 142 RALRDRVVTFNPCVHTELPKVVKKKARTLTPEEYVAILTALPE--QHRLMVETAINTGLR 199 Query: 206 CSDSCRAGVQHLQNNIFSIKTQKTGTIITV------------ELPDGFMKLLAMTPIG-- 251 + +HL + ++T +++ P P Sbjct: 200 WGELIALKPRHLDLIKRQLTVEETVVEVSIKNSPTGHRMLTKPYPKDNEARTMGLPADLV 259 Query: 252 --------------KETFFINNDKQKMNATQFSIWFKAKATKA---GVNKSAHGVRKFSA 294 + F + ++ F A +A + H +R A Sbjct: 260 DQLADWITTRRLRLDDLLFATREGTPISRNTFRTRVWLPAIRASGVDFDVRVHDLRHAHA 319 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKG---ADRIRLGIKNSRR 338 + G+ +M G + + Y AD L N R Sbjct: 320 SWLLAGGSDLKSVMDRMGHAQITTTQKYLHALPDADAKNLDALNRIR 366 >gi|325924348|ref|ZP_08185892.1| site-specific recombinase XerD [Xanthomonas gardneri ATCC 19865] gi|325545213|gb|EGD16523.1| site-specific recombinase XerD [Xanthomonas gardneri ATCC 19865] Length = 358 Score = 98.6 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 52/293 (17%), Positives = 100/293 (34%), Gaps = 30/293 (10%) Query: 60 YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119 YI + TT++ + Y ++IS + +I+ G + +T + + Sbjct: 50 YIRRAGSERTTVEAAMRRYLAEVT-PGKRPVTQISEVRRAEVLIKHLGRYSLAAVTAEIV 108 Query: 120 RSGVESR---------KHTPSSAIQF---LTSMRVLFKWAVRQ---EYVAINPCLSVERP 164 + R + P S L + +F A+++ + P L + RP Sbjct: 109 ARFRDERLAGDLDAQGQRRPRSNNTVRLELALLGHMFTVALKEWGLGLIHS-PVLGIRRP 167 Query: 165 KRKTEGIRPWTKEDMQQFKSFWSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQ--NN 220 R + Q+ S P L L +G+R S+ + Sbjct: 168 PPGPGRDRRLIPHEEQRLLRAVDGHSNPMLGWIVRLALETGMRASELVGLRRSQVDLVRR 227 Query: 221 IFSIKTQKTGTIITVELPDGFMKLLAMT------PIGKETFF---INNDKQKMNATQFSI 271 + ++ K G+ TV L +++L PI + F D ++ + Sbjct: 228 VARLQQTKNGSSRTVPLTQEAVRVLRAALANPVRPIDTDLLFYGEPGRDGKRRSYQFNPA 287 Query: 272 WFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 W K K + H +R + + +AG + E+ A G K++ YT Sbjct: 288 WMKLKRDSGMADLHFHDLRHEAISRLVEAGLSDQEVAAISGHKSMQMLRRYTH 340 >gi|170293839|gb|ACB12975.1| IntI 1 [Aquabacterium sp. PL1F5] gi|170293900|gb|ACB13034.1| IntI1 [Imtechium sp. PL2H3] Length = 337 Score = 98.6 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 43/306 (14%), Positives = 94/306 (30%), Gaps = 62/306 (20%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHT 129 ++ + R+S + ++ + ++ + IR G + + + + + RK + Sbjct: 16 VLDQLRESIRYLHYSLRTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75 Query: 130 PSSAIQFLTSMRVLFK--WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 S+ Q L ++ + ++ + RP+ T +++ + F Sbjct: 76 VSTHRQALAALLFFYGKVLCTDLPWLQ-----EIGRPRPSRRLPVVLTPDEVVRILGFL- 129 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQKTGTIITVELPDGFMKLL 245 EG RL + L +G+R S+ + V+ + ++ K + LP+ L Sbjct: 130 EGEH-RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSL 188 Query: 246 AMTPIGKETFFINN---------------------------------------------D 260 +++ + Sbjct: 189 REQLSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVR 248 Query: 261 KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318 + M F FK +AG+ K + H +R AT +G + G V Sbjct: 249 RHHMYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVST 308 Query: 319 AETYTK 324 YT Sbjct: 309 TMIYTH 314 >gi|49476286|ref|YP_034327.1| integrase /recombinase xerD [Bartonella henselae str. Houston-1] gi|49239094|emb|CAF28397.1| Integrase /recombinase xerD [Bartonella henselae str. Houston-1] Length = 312 Score = 98.6 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 38/268 (14%), Positives = 94/268 (35%), Gaps = 32/268 (11%) Query: 89 VNSRISFESYF-----DQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVL 143 ++ +++ + F ++ + S + + SS + L+++R Sbjct: 22 EHTLAAYQRDLQWAQDELFSHSVSLFSAQREDLIGLLSLMHTLGFAASSQARRLSTLRQF 81 Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF--------------WSEG 189 +++ + A +P +++ P++ + ++ + + Sbjct: 82 YQFLYAEGLRADDPSHNIDAPRQGRPLPKVVSENVVTKLLDLAQLEVNQEDYGSKGHFRA 141 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG-----FMKL 244 + +L E L +GLR S+ VQ ++ +SI + G + L + Sbjct: 142 LRLQLLIEMLYATGLRISELVSLPVQAVRGKDYSILVRGKGKKERMVLLSKKACQVLSQW 201 Query: 245 LAMTPIGK--ETFFINNDKQKMNATQFSIWFKAK---ATKAGVNK---SAHGVRKFSATI 296 L++ GK E+ ++ + + + + A +AG+ S H +R A+ Sbjct: 202 LSLRDQGKYAESLYLFPARSETGYIARQVVARDLKSLARRAGIKSGGFSPHVLRHAFASH 261 Query: 297 SADAGATAHELMATYGWKTVDQAETYTK 324 GA + G + + YT Sbjct: 262 LLQNGADLRAVQHLLGHSDIATTQIYTH 289 >gi|331086028|ref|ZP_08335111.1| hypothetical protein HMPREF0987_01414 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330406951|gb|EGG86456.1| hypothetical protein HMPREF0987_01414 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 376 Score = 98.6 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 43/283 (15%), Positives = 85/283 (30%), Gaps = 38/283 (13%) Query: 85 GSLAVNSRISF-ESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVL 143 ++ N+ ++ E Y I G + H + + L Sbjct: 81 KTVRPNTVRNYTERYIRNIKPLIGKMSLSDVKPLHCQKIFYDMADQGYRTSTIYQARITL 140 Query: 144 FK---WAVRQEYVAINPCLS-VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFL 199 + +A E + NPC V+ K + + D+Q+ ++EG + F+ Sbjct: 141 YNMLEYAKENEVLRTNPCKRSVKSDMGKPSEKKVALERDVQKIFLRYAEGQSYENQYRFI 200 Query: 200 LYSGLRCSDSCRAGVQHLQ--NNIFSIKTQ-----------------KTGTIITVELPDG 240 L +GLR + + + + I+ K+G T+ L + Sbjct: 201 LQTGLRTGELVGLKWEDIDFESKTIQIRRSMEYRYSVKEWRIGEPKSKSGYR-TIPLTEE 259 Query: 241 FMKLLAMTPIGK-----------ETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHG 288 + +L E F+ + + + KA + + S H Sbjct: 260 AVTILNKQKEKNKWISEISKEWEEFVFLCRKGTPVKNSTYDTALFKICDKAQIPRFSMHI 319 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIR 330 +R AT +AG L G + Y + + Sbjct: 320 LRHTFATRCIEAGMKPKTLQMLLGHSNIGITMNLYVHTTEEEK 362 >gi|229521999|ref|ZP_04411416.1| site-specific recombinase XerD [Vibrio cholerae TM 11079-80] gi|229340924|gb|EEO05929.1| site-specific recombinase XerD [Vibrio cholerae TM 11079-80] Length = 348 Score = 98.6 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 48/319 (15%), Positives = 108/319 (33%), Gaps = 52/319 (16%) Query: 73 WLISEYRK-SAHWGSLAVNSRISFESYFDQIIR-KSGDFDYRKITT--KHIRSGVESRKH 128 LI ++ + + + + Q+ + SG+F ++ T + + + Sbjct: 18 DLIDQFLTWKGENENCSARTVKKYRGLLSQLDKFLSGNFAAAELKTLEQFSGGWLHRAGY 77 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP--WTKEDMQQFKSFW 186 + +S + ++R + + ++ VA NP + P+ R + F+ Sbjct: 78 SAASRKVAVAAIRGFYSFLAKRRIVARNPAADLVYPRMGRRLPRFMGLKSAEALLFQPNL 137 Query: 187 SE--GSQPRLAFEFLLYSGLRCSDSCRAG------VQHLQNNIFSIKTQKTGTI---ITV 235 + G + L+ G R + C Q+ + +I+T + G + V Sbjct: 138 TSLSGVRDSAMLALLIGCGFRVAGLCGLNESQLIWYQYGEVERLAIRTLEKGERERLVPV 197 Query: 236 EL-----------PDGFMKLLAMTPIGKETFFINNDKQK------------MNATQFSIW 272 L + + G + F+N + ++ Sbjct: 198 PLEAMLLVQAYLGHHDLKHVDRVLDNGDQVLFVNLRNRHVPEWEHRGELRRLSTRAVDRM 257 Query: 273 FKAKATKAGVNKS---AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 K A AGV + AH +R T A++ ++ ++ A G +E Y+ Sbjct: 258 IKKYAIAAGVPEDQSHAHALRHLFGTELAESDSSTLQIQALMGHADPKTSEIYSH----- 312 Query: 330 RLGIKNSRRISSVVDSDDP 348 + R+++ V+D +P Sbjct: 313 ----ISMRKMTHVLDKGNP 327 >gi|193214435|ref|YP_001995634.1| integrase family protein [Chloroherpeton thalassium ATCC 35110] gi|193087912|gb|ACF13187.1| integrase family protein [Chloroherpeton thalassium ATCC 35110] Length = 336 Score = 98.6 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 44/286 (15%), Positives = 83/286 (29%), Gaps = 51/286 (17%) Query: 90 NSRISFESYFDQIIRKSG-----DFDYRKITTKHIRSGVESR---KHTPSSAIQFLTSMR 141 R + + + ++ D + T IR + + S + L S++ Sbjct: 34 AYRKDLSQFLEFLKKEFELPSSQDISLADVETSTIRLFLGELLDAGYQSKSIGRKLASVK 93 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK-------EDM-----QQF------K 183 FK+ V ++ +P +V PK K + +++ + F K Sbjct: 94 SFFKFLVYINHLPASPAANVTTPKAKKTLPTFLNETQTQTLFDEILDHFNEAFYHDNRAK 153 Query: 184 SFWSEGS--------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIIT 234 + + R E GLR ++ + L +K K Sbjct: 154 KHEKVNTLEWDFRYNRDRAILEMFYSCGLRLAELIGLNIMELDFQNGFVKVLGKGRKQRI 213 Query: 235 VELPDGFMKLL--------------AMTPIGKETFFINNDKQKMNATQFSIWFKAK--AT 278 + L + K L + +E F+ +++ K Sbjct: 214 IPLGESAQKTLKNYLEIKKKFFEMKRSNVLEREAVFVTEKGKRVYPVLVQRLVKKYLSPV 273 Query: 279 KAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 KS H +R AT + GA + G + E YT Sbjct: 274 TEQKKKSPHVLRHTFATHLLNNGADLRSVSEMLGHSNLSTTEIYTH 319 >gi|300853246|ref|YP_003778230.1| phage integrase-like protein [Clostridium ljungdahlii DSM 13528] gi|300433361|gb|ADK13128.1| phage integrase related protein [Clostridium ljungdahlii DSM 13528] Length = 391 Score = 98.6 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 48/371 (12%), Positives = 106/371 (28%), Gaps = 71/371 (19%) Query: 17 RHGKIIYYFRKGHGR-----RIRL-----PYPHESTFIPAYMSALTGSTPKREYINSPRK 66 R+GK Y R GR RIR + Y + L Sbjct: 9 RNGKKYYRLRVDLGRDSDGNRIRKTFYGKSKKDAEDKLQEYKNGLNSGLSND-------Y 61 Query: 67 KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYR-----KITTKHIRS 121 TL + + ++ ++ +E + I+ S + + + + + Sbjct: 62 DKLTLGNVCKLWLFEKIKNTVKPSTFERYEGVYRIYIKSSPLYPVKLKELKSLDIQRYYN 121 Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS--VERPK------RKTEGIRP 173 + + + S ++ F + + + Y+ N C+ + P+ K + I Sbjct: 122 DLFNSGKSTSIIKNLDKLLKSFFNYCIDEGYIVRNYCIGKSITIPESNSVNENKKDDITV 181 Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN------------- 220 +T ++ QF + + + + F L +GLR + + Sbjct: 182 FTVDEQNQFINAVQDH-RLKALFLLDLGTGLREGEILGLKWSDIDFENCTLSVKRAIKGV 240 Query: 221 -----------IFSIKTQKTGTIITVELPDGFMKLL------------AMTP--IGKETF 255 + + +I T+ P+ + +L P + Sbjct: 241 TLIEGTKRNYHLIEQTPKTKNSIRTIPFPENLIPILEKHQLQQKEEKIKAGPAYTKNDYV 300 Query: 256 FINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWK 314 F ++ ++ + K H +R AT + + G Sbjct: 301 FCTELGLPIDPRNLRRSYERVLKNNNIPYKKFHSLRHTFATRLFENNVPLKTVQMLLGHS 360 Query: 315 TVD-QAETYTK 324 ++ A YT Sbjct: 361 NINITANIYTH 371 >gi|291529887|emb|CBK95472.1| Site-specific recombinase XerD [Eubacterium siraeum 70/3] Length = 327 Score = 98.6 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 38/264 (14%), Positives = 89/264 (33%), Gaps = 14/264 (5%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRK 127 + L+ + + + + + + ++ G R I T +RS + E + Sbjct: 50 QNLVELFLSAKRIEGCSEKTLKYYNATIQAMLTCVGKG-VRHIVTDDVRSYLTEYQEKNQ 108 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + + + F W ++Y+ +P + + K T +T E ++ + + Sbjct: 109 SSKVTIDNIRRILSSFFSWLEDEDYILKSPVRRIHKVKTGTNIKETYTDEALELMRDSCT 168 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG-----FM 242 E + + L +G+R + + N G + D Sbjct: 169 E-LRDLAIIDMLASTGMRVGEMVLLNRADINFNERECVVFGKGDKERIVYFDARTKIHLQ 227 Query: 243 KLLAMTPIGKETFFINNDK--QKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISAD 299 L F++ K +++ + + + + G++K H R+ AT++ D Sbjct: 228 NYLNSRRDENPALFVSLQKPHKRLQISGIEVRLREYGKRLGLSKVHPHKFRRTLATMAID 287 Query: 300 AGATAHELMATYGWKTVDQAETYT 323 G +L G + +D Y Sbjct: 288 KGMPIEQLQQLLGHRRIDTTLQYA 311 >gi|15925018|ref|NP_372552.1| integrase [Staphylococcus aureus subsp. aureus Mu50] gi|15927603|ref|NP_375136.1| hypothetical protein SA1835 [Staphylococcus aureus subsp. aureus N315] gi|156980344|ref|YP_001442603.1| hypothetical protein SAHV_2013 [Staphylococcus aureus subsp. aureus Mu3] gi|255006817|ref|ZP_05145418.2| hypothetical protein SauraM_10125 [Staphylococcus aureus subsp. aureus Mu50-omega] gi|13701822|dbj|BAB43115.1| int [Staphylococcus aureus subsp. aureus N315] gi|14247801|dbj|BAB58190.1| similar to integrase [Staphylococcus aureus subsp. aureus Mu50] gi|156722479|dbj|BAF78896.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu3] Length = 390 Score = 98.6 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 64/385 (16%), Positives = 129/385 (33%), Gaps = 62/385 (16%) Query: 17 RHGKIIYYFRK---GHGRRIRLPYPHESTF----IPAYMSALTGSTPKREYINSPRKKPT 69 + G + +R + Y S F + + + + +P + Sbjct: 6 KRGNT-WRYRISLGKDAETGKYKYISNSGFKRKSDAKHHAEMVERQLRNGDYIAP--STS 62 Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129 T K + ++ S + + V+S + E I + + + I + V Sbjct: 63 TFKQVADDWI-SQYANEVKVSSVRAREKAIHHAIERFKNKPIQTIKKHDYQRFVNDISIQ 121 Query: 130 PSSA--IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK--------TEGIRP-WTKED 178 S +TS ++FK+A + + I P ++RPK+K TE + K++ Sbjct: 122 YSKNYVDSIVTSTNMIFKYAYDMKLIRILPSEGIKRPKKKVSVEELEDTEIHKKFLEKDE 181 Query: 179 MQQFKSFWSEGSQPRLAFEF---LLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQ------ 227 + QF P+ +FE L Y+G+R + + NN +I Sbjct: 182 LFQFLEIAKNHHSPQNSFEVFYTLAYTGMRAGELLALKWSDIDFENNTINITKTYYNPNN 241 Query: 228 ----------KTGTII-TVELPDGFMKLLAMTP------------IGKETFFINNDKQKM 264 KT + I + + +KLL + F + + + Sbjct: 242 NKKQYQILTPKTESSIGKISVDPHVIKLLKNYKVDVQDTWKNELYVDNNFVFTDVNGYPL 301 Query: 265 NATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE- 320 + +W KA K + S H R + +AG E+ K ++ Sbjct: 302 VIKKLQLWIKAILKKTNITNKQISTHSFRHTHCALLIEAGVHIKEIQERLRHKDINTTMN 361 Query: 321 TYTKGADRIRLGIKNSRRISSVVDS 345 Y K + + S++ S ++++ Sbjct: 362 IYAKITNSYKK--DASQKFSKLMEN 384 >gi|220905619|ref|YP_002480931.1| integrase family protein [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219869918|gb|ACL50253.1| integrase family protein [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 398 Score = 98.6 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 57/370 (15%), Positives = 119/370 (32%), Gaps = 36/370 (9%) Query: 4 SLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSA-----------LT 52 + P + KI Y + G+++ ES + +A L Sbjct: 24 KSKTPSGEAVPTEKADKIYYIMYRLDGKKVEEKVGRESERMTVAKAAKIREQRINGVTLP 83 Query: 53 GSTPKREYINSPRKKPT--TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD 110 + +R+ + + + T+ L Y+ + V F++Y + S + Sbjct: 84 NTERRRQRLEKAQAEAGRWTIGKLWKAYKDNNPGLKGIVTDENRFKNYLSGFTKLSPEEL 143 Query: 111 YRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVA-INPCLS-VERPKRKT 168 ++ +R + + L +R + + V++ A +P E PK Sbjct: 144 TTQM-VDTLRLKLLKSGKKAGTTKNVLELLRRIINFGVKKGLCAWQDPSRLHFEMPKLNN 202 Query: 169 EGIRPWTKEDMQQFKSFWSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSI 224 TKE+ +F + Y+G+R ++ H+ + +I Sbjct: 203 VKTEMLTKEERARFIEAAKAAPNRKAGQLMLMAYYTGMRRNELFGLKWAHIDFEHGFINI 262 Query: 225 KTQK-----TGTIITVELPDGFMKLLA-MTPIGKETFFINNDKQKMNATQFSIWFKAKAT 278 +K + + L +LLA + G E F D + + A Sbjct: 263 VGEKQEGAKSNRDERIPLSPPVRELLAEVGDNGSEYVFPGKDGRSRMIDM-NKQVNAIKA 321 Query: 279 KAGVNKSA---HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335 AG+ K HG+R A+++ G + K + Y L + Sbjct: 322 AAGLPKDFRPLHGLRHTFASVAVSNGVPLSHVQKLLTHKDPTLTQRYAH------LEDEA 375 Query: 336 SRRISSVVDS 345 + +++V + Sbjct: 376 LKNAANMVGN 385 >gi|162148139|ref|YP_001602600.1| site-specific tyrosine recombinase XerC [Gluconacetobacter diazotrophicus PAl 5] gi|161786716|emb|CAP56299.1| Tyrosine recombinase xerC [Gluconacetobacter diazotrophicus PAl 5] Length = 324 Score = 98.6 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 50/309 (16%), Positives = 99/309 (32%), Gaps = 49/309 (15%) Query: 70 TLKWLISEYRK-SAHWGSLAVNSRISFESYFDQIIRKSGD--------FDYRKITTKHIR 120 T L + + + ++ D+ + G +++ +R Sbjct: 2 TGADLRDAFLDWMRDERRASPLTIAAYRGDLDRFLDFIGAHVGGTVDLAVLDRLSLADLR 61 Query: 121 SGVE--------------SRKHTP----SSAIQFLTSMRVLFKWAVRQEYVAINPCLSV- 161 + + R TP + + +++MR +++ R+ + NP + Sbjct: 62 AWLAFEHAQGHALAQRDRGRSSTPDRAARTRARRVSAMRSFYRYLARR-HGVTNPAPGLL 120 Query: 162 ERPKRKTEGIRPWTKEDMQQF------KSFWSEGSQPRLAFEFLLY-SGLRCSDSCRAGV 214 P+ K+ RP ++ + G A LLY GLR S++ V Sbjct: 121 AAPRTKSPLPRPLSEAQALDVPDGVGDLAVTPLGQARDAALFLLLYGCGLRISEALGLDV 180 Query: 215 QHLQ----NNIFSIKTQKTGTIITVELPDGFMKLL------AMTPIGKETFFINNDKQKM 264 + L + K G V + ++L P+ F ++ Sbjct: 181 RDLDHALSAGGTLLVRGKGGRERLVPILPAVARVLTDWRARHPAPLPDAPLFPGVRGGRL 240 Query: 265 NATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 +A AG+ + + H +R AT + GA + G ++ + Y Sbjct: 241 QPAVAQRAMRAWRDMAGLPDHATPHALRHSFATHLMEGGADLRTIQELLGHASLSTTQRY 300 Query: 323 TKGADRIRL 331 T AD RL Sbjct: 301 T-LADEARL 308 >gi|331091113|ref|ZP_08339955.1| hypothetical protein HMPREF9477_00598 [Lachnospiraceae bacterium 2_1_46FAA] gi|330405335|gb|EGG84871.1| hypothetical protein HMPREF9477_00598 [Lachnospiraceae bacterium 2_1_46FAA] Length = 353 Score = 98.6 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 47/330 (14%), Positives = 103/330 (31%), Gaps = 41/330 (12%) Query: 41 STFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD 100 F+ Y A+ +T + I+ K+L+ + + S + S + Sbjct: 28 PGFVRDYFRAIEPTTSVKTRISYAYDIRIFFKFLLE---NNPVYKSYKMTDFQV--SDLE 82 Query: 101 QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160 +I + + + + + ++++R + + + + + NP L Sbjct: 83 RIAPVDIEEYQEYLKVYQNEDKQITNAEKGLA--RKMSALRSFYNYYYKHQMIEKNPSLF 140 Query: 161 VERPKRKTEGIRPWTKEDMQQFKS----------------FWSEGSQPRLAFEFLLYSGL 204 V+ PK + I +++ + ++ LL +G+ Sbjct: 141 VDMPKIHDKAIVRLDTDEVALLLEYVENCGNQLTGQKKVYYEKNKTRDLAILTLLLGTGI 200 Query: 205 RCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLL-----------AMTPIG 251 R S+ + + NN + +K G + V K L P Sbjct: 201 RVSECVGLDIPDIDFKNNGIKVM-RKGGNEMVVYFGPEVRKALIDYLETTRNTITPLPEH 259 Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMA 309 + F++ K++M K A + NK + H +R T + + Sbjct: 260 ENALFLSTQKKRMGVQAVENMVKKYAREVTPNKKITPHKLRSTYGTSLYKETGDIYLVAD 319 Query: 310 TYGWKTVDQA-ETYTKGAD-RIRLGIKNSR 337 G + V+ + Y D R R + Sbjct: 320 VLGHRDVNTTKKHYAAIDDARRRQAASAVK 349 >gi|299135445|ref|ZP_07028635.1| tyrosine recombinase XerC [Afipia sp. 1NLS2] gi|298589853|gb|EFI50058.1| tyrosine recombinase XerC [Afipia sp. 1NLS2] Length = 327 Score = 98.6 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 40/281 (14%), Positives = 94/281 (33%), Gaps = 33/281 (11%) Query: 85 GSLAVNSRISFESYFDQ----IIRKSGD----FDYRKITTKHIRSGVESRKH---TPSSA 133 L+ + ++E Q + G + I +R+ + +R+ S Sbjct: 39 RRLSPKTLEAYERDLRQCLMFLAEHWGKPASLKAFAAIEATDVRAFMAARRADDIGGRSL 98 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW--------TKEDMQQFKSF 185 ++ L +R ++ R+ + ++ PK +P T+ D++ + Sbjct: 99 MRALAGLRSFGRFLEREGKGKVGALSAIRAPKISKTLPKPLAVSAARNLTEADIRAGEDR 158 Query: 186 WS-EGSQPRLAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVEL--- 237 ++ L SGLR S++ + + + ++ ++ + T + L Sbjct: 159 PPWIWARDAAVMALLYGSGLRISEALGLNRRDIPEPGRGDVITVTGKGNKTRMVPVLQGV 218 Query: 238 PDGFMKLLAMTP---IGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKF 292 + +A P ++ F+ ++ + + G+ + H +R Sbjct: 219 LEAVQDYIAQCPYPLAPEKPVFVGARGGPLSPRIIQLTMERLRGALGLPDSATPHALRHS 278 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 AT G + G ++ + YT G D RL Sbjct: 279 FATHLLSRGGDLRAIQELLGHASLSTTQIYT-GIDAERLMD 318 >gi|150005337|ref|YP_001300081.1| integrase protein [Bacteroides vulgatus ATCC 8482] gi|149933761|gb|ABR40459.1| integrase protein [Bacteroides vulgatus ATCC 8482] Length = 407 Score = 98.6 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 48/288 (16%), Positives = 99/288 (34%), Gaps = 37/288 (12%) Query: 78 YRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT---TKHIRSGVESRKHTPSSA 133 + KSA +++ + S + D++ +T + + + + ++ Sbjct: 112 FAKSAIDNSDKKQSTKDNLHSTLAVLNDFRSGLDFKDLTYTFLRDFEQYLREKGNAVNTI 171 Query: 134 IQFLTSMRVLFKWAVRQEYVAIN--PCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191 + + +R L A+ Q Y+ + P + K++ T +++++ ++ E Sbjct: 172 AKHMRQLRTLVNEAINQGYMHADAYPFRKYK-IKQEKGRHEFLTPDELKKLETVEVEEKS 230 Query: 192 PR---LAFEFLLYSGLRCSDSCRAGVQHLQN----NIFSIKTQKTGTIITVELP----DG 240 R AF F Y+GLR SD C+ ++ K+ KTG I + L Sbjct: 231 MRHVLDAFLFCCYTGLRYSDFCQLTPENFIRVNGKRWLYFKSVKTGVEIRLPLHLLFESR 290 Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISA 298 + +L P + ++ + + G+ K H R AT+ Sbjct: 291 ALGILDRYPDIGSLVSL------PCNSEVNKQLRKLTGLCGIKKRITYHVSRHTCATLLV 344 Query: 299 DAGATAHELMATYGWKTVDQAETYT-----------KGADRIRLGIKN 335 G + G +V + Y+ K R R +K Sbjct: 345 HQGVAITTVQKLLGHTSVKTTQIYSEVLSSTIVRDLKNVQRKRKKVKM 392 >gi|291522918|emb|CBK81211.1| Site-specific recombinase XerD [Coprococcus catus GD/7] Length = 282 Score = 98.6 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 42/274 (15%), Positives = 100/274 (36%), Gaps = 18/274 (6%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK---H 128 K + R A +L + + S +R G + +T + S + +++ Sbjct: 3 KDIFESIRNEAEKRNLRERTIQLYCSDVSYFLRWIG-KNVSDLTLEDAESFLTAKRLEGR 61 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 +P + + ++++ L+K ++ + +V KR+ +++++ Sbjct: 62 SPETHNHYRSAIKFLYKKVLKTVWDDD----TVPAMKRERNLPAVLSRDEINAIIDATP- 116 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL------PDGFM 242 + + + SGLR S+ + +I ++T I D Sbjct: 117 NLKHKAIIATMYSSGLRVSEVVHLHYDDISRTNMTIHVRETKGRIDRYTILSQKNLDLLT 176 Query: 243 KLLAMTPIGKETFFINND-KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299 + K+ F ++ ++ + +FK A AG+N+ S+H R A+ + Sbjct: 177 EYWYKCGRPKDILFPSSWSGGYLDIASVNQFFKKSAKLAGINRHVSSHACRHSFASHLFE 236 Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 +G + + G + Y +++ LGI Sbjct: 237 SGTDIKYIQSLLGHVDPRSTDVYLHVSNKTLLGI 270 >gi|237736957|ref|ZP_04567438.1| integrase/recombinase [Fusobacterium mortiferum ATCC 9817] gi|229420819|gb|EEO35866.1| integrase/recombinase [Fusobacterium mortiferum ATCC 9817] Length = 292 Score = 98.6 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 44/272 (16%), Positives = 92/272 (33%), Gaps = 24/272 (8%) Query: 75 ISEYRKSAHWGS-LAVNSRISFES-------YFDQIIRKSGDFDYRKITTKHIRSGVESR 126 I ++ +G+ + N+ S + Y ++I + + + ++ Sbjct: 13 IKDFLYFEEFGNNKSPNTIKSMKKDLFQLAEYLNEIEKVDNCMAIDSVMIRGFIINLQEN 72 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 T + + L+S+R FK+ VR++ + +P + P T+ T E++ + + Sbjct: 73 GITKRTINRKLSSLRSFFKYLVREKRINQSPVEVIASPSFYTQKPDILTLEEINKLREVI 132 Query: 187 SE----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242 S G + RL E L SG+ + G + + + V + Sbjct: 133 SLKNANGLRDRLILELLYSSGITSVEMLGVGEGVFDLDKRELYVSNGKSRRVVFFSERTR 192 Query: 243 KLLAMTPIGK----------ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290 + K + F+N +++ A KAG+ + S + R Sbjct: 193 EFFKRYIKAKKEKYKEKYNPDILFVNGSATRLSDRSLRRIIDRYAVKAGIEREISPYSFR 252 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETY 322 A G L G T++ + Y Sbjct: 253 HTFAVHMLSHGMDILYLKELMGHVTLESTKVY 284 >gi|218534740|ref|YP_002424501.1| integrase family protein [Methylobacterium chloromethanicum CM4] gi|218525889|gb|ACK86472.1| integrase family protein [Methylobacterium chloromethanicum CM4] Length = 291 Score = 98.6 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 46/246 (18%), Positives = 87/246 (35%), Gaps = 9/246 (3%) Query: 88 AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWA 147 + N+R ++E + + G + ++ + R + ++ +++ LF +A Sbjct: 35 SPNTRRNYEREARRFLAHVG-RPLAAVRMGDLQEYIAGRPGSSATTALSAAALKSLFAFA 93 Query: 148 VRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCS 207 Y+ N +V+ P K E + R+ L GLR S Sbjct: 94 QEAGYLRFNVGAAVKVPPIKNTLAERIMPEGDALLMIRQEPALRNRVLLTVLYGGGLRIS 153 Query: 208 DSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDGF----MKLLAMTPIGKETFFINNDK 261 + C + L ++ G V L ++ L + + F + Sbjct: 154 EVCSLRWRDLAPRDEAGQATVFGKGGKTRVVLLSAATWKVLQALREEALADDPVFRSRKG 213 Query: 262 QKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319 ++ + KA A +AG+ SAH +R A+ + D GA H + AT G +V Sbjct: 214 GALDPSAVHRIVKAAAARAGLPADVSAHWLRHAHASHALDRGAPIHLVQATLGHASVATT 273 Query: 320 ETYTKG 325 Y Sbjct: 274 GRYLHA 279 >gi|254303771|ref|ZP_04971129.1| possible integrase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148323963|gb|EDK89213.1| possible integrase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 353 Score = 98.6 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 46/286 (16%), Positives = 95/286 (33%), Gaps = 26/286 (9%) Query: 80 KSAHWGSL--AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKHTPSSAIQ 135 + + L + ++ + + I + IT I + RK+ SS Sbjct: 68 QHLEFKKLRIKELTYMNMSNILNSI-TYFDNLLISDITPIQISNFQNDLLRKYKGSSIRT 126 Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI-RPWTKEDMQQFKSFWSEGSQPRL 194 +++LF W VR + + NP V+R K +T+ T ++ Q + +L Sbjct: 127 INAYVKMLFTWCVRYKNLTSNPFDMVDRLKLETKKRMDIITVDEFNQIVEQVN-NPDMKL 185 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQ----------------NNIFSIKTQKTGTIITVELP 238 F+ L ++GLR ++ + + + G+I +++ Sbjct: 186 MFKLLFWTGLRIGEARALKIDDIDFNNKTISVTKSYTNLSGKSIITTPKTKGSIRVIKID 245 Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK-AGVNKSAHGVRKFSATIS 297 D + + + +N + N + FK K G + H +R A+ Sbjct: 246 DVLLSEIKDYIDKAKYILDDNFIFRFNKASYRYNFKNATIKVLGRDLRVHDLRHSHASFL 305 Query: 298 ADAGATAHELMATYGWKTVDQA-ETYTK-GADRIRLGIKNSRRISS 341 + G + G Y+ DR I ++ + Sbjct: 306 INNGVDILLISKRLGHSNTAMTLNVYSHLYPDRENEAINLINKLKA 351 >gi|49146367|ref|YP_025475.1| putative site-specific recombinase [Caedibacter taeniospiralis] gi|40458335|gb|AAR87083.1| putative site-specific recombinase [Caedibacter taeniospiralis] Length = 282 Score = 98.6 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 32/272 (11%), Positives = 81/272 (29%), Gaps = 22/272 (8%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD--------FDYRKITTKHIRSGVE 124 I + K + + I++ + + D + +S + Sbjct: 4 DAIERFIKYLESTEKSPATLINYRRDLNAFAKWFEDNNGDAFLPAKITTTDLRQYKSMLI 63 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 P + + + S+R W + N + + ++ + W ++ Q Sbjct: 64 DHPFKPKTINRRIGSLRSFINWLWDIGEI--NNKFPLPKLVKENQPTPMWLDKNQQHALM 121 Query: 185 FWSE---GSQPRLAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVEL 237 E + + +G+R + + + I I+ K + L Sbjct: 122 RHLERYGNERDASIISIFMNTGMRVQEFVNLKWIDVTLSDKKGIIMIRHSKANKYREIPL 181 Query: 238 PDGFM----KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKF 292 KL T G + + + + + + K + ++ S H +R Sbjct: 182 NKDARYAFVKLGFKTHAGSDEYVLQGQRGNITTRGIQMMIKRRVAYTDLDYLSPHMLRHT 241 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTK 324 +AG + ++ G +T++ + Y Sbjct: 242 FCKNLVNAGVSLEKVAVLAGHETLETTKIYCH 273 >gi|146338350|ref|YP_001203398.1| putative phage-like integrase [Bradyrhizobium sp. ORS278] gi|146191156|emb|CAL75161.1| putative phage-like integrase [Bradyrhizobium sp. ORS278] Length = 424 Score = 98.6 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 63/344 (18%), Positives = 118/344 (34%), Gaps = 41/344 (11%) Query: 15 RTRHGKIIY--YFRKGHGRRIRLPYPHESTFIPAYMS---------ALTGSTPKREYINS 63 R + G +Y FR +R PH S + P G P E Sbjct: 35 RRQRGTPVYVLKFRASGRQRFFTIGPHGSPWTPEKARKEAKRLLGLVAQGKDPAAERELL 94 Query: 64 PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123 + T + + EY K+A + E Y + + +I+ +H+ + V Sbjct: 95 TLQTADTFRKVADEYLKTAK-QKQRPRTYSEIERYLLGVWKPLHQLPMSQISRRHVAARV 153 Query: 124 ESRK--HTPSSAIQFLTSMRVLFKWAVRQEY-VAINPCLSVERPKRKTEGIRPWTKEDMQ 180 + +A + +++ +F WA+R+ + NP L RP R T ++ Sbjct: 154 GDIATNNGAVTAARARSALSAMFNWAIREGLEIPANPVLGTNRPAAPRSRERVLTDGELA 213 Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK----TQKTGTIITVE 236 + + + R + L+ + R + + + K + Sbjct: 214 EIWTGLEDDDYGR-IVKLLILTAQRRDEVGGMRWAEIDGSRCLWTIPGSRTKNHREHALP 272 Query: 237 LPDGFMKLLAMTPIGKETFFINN-DKQKMNATQFSIWFK-----------AKATKAGVNK 284 L + M LL +G+E F + ++ FS W K + +AGV + Sbjct: 273 LTEAAMLLLPAASVGREFVFGDGPRRKGDAPRGFSGWSKSKAALDEGLLAKRKERAGVGE 332 Query: 285 S--------AHGVRKFSATISADA-GATAHELMATYGWKTVDQA 319 + H +R+ +AT+ AD G H + A + +A Sbjct: 333 TVNPMPEWWLHDLRRTAATVMADQLGVLPHIIEAVLNHVSGHRA 376 >gi|153815634|ref|ZP_01968302.1| hypothetical protein RUMTOR_01870 [Ruminococcus torques ATCC 27756] gi|317502423|ref|ZP_07960587.1| phage integrase family Site-specific recombinase [Lachnospiraceae bacterium 8_1_57FAA] gi|145847065|gb|EDK23983.1| hypothetical protein RUMTOR_01870 [Ruminococcus torques ATCC 27756] gi|316896161|gb|EFV18268.1| phage integrase family Site-specific recombinase [Lachnospiraceae bacterium 8_1_57FAA] Length = 322 Score = 98.6 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 36/248 (14%), Positives = 84/248 (33%), Gaps = 14/248 (5%) Query: 88 AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS----SAIQFLTSMRVL 143 + + + + + K + R+ITT+ IR+ + + + ++ Sbjct: 61 SERTIQYYRVTVEHLFSKM-NQSVRRITTEEIRTYLSDYQKINRCSNVTIDNIRRNISSF 119 Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSG 203 F W ++Y+ +P + + K KT T E +++ + +E + + L +G Sbjct: 120 FSWLEEEDYILKSPMKRIHKIKTKTVVKSVITDEGIEKLRDNCAE-IRDLAIIDLLYSTG 178 Query: 204 LRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDG----FMKLLAMTPIGKETFFIN 258 +R + ++ + I K V + + E F+ Sbjct: 179 IRVGELVNLNIEDIDLEGRECIVYGKGDKERRVYFDAKAKVHLKEYIEKRKDNNEALFVT 238 Query: 259 NDKQK--MNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKT 315 D + + I + + +++ H R+ AT + D G ++ G Sbjct: 239 LDAPHDRLKISGVEIRLRQLGRQLKLDRIHPHKFRRTMATRAIDKGMPIEQVQKILGHSQ 298 Query: 316 VDQAETYT 323 +D Y Sbjct: 299 IDTTMQYA 306 >gi|163761399|ref|ZP_02168473.1| site-specific tyrosine recombinase XerC [Hoeflea phototrophica DFL-43] gi|162281394|gb|EDQ31691.1| site-specific tyrosine recombinase XerC [Hoeflea phototrophica DFL-43] Length = 316 Score = 98.6 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 38/267 (14%), Positives = 77/267 (28%), Gaps = 28/267 (10%) Query: 85 GSLAVNSRISFESYFDQII-----------RKSGDFDYRKITTKHIRSGVESRKHTPSSA 133 LA + ++E Q + + S D R + + + + Sbjct: 32 RRLADKTAEAYERDLRQFLGFLTLHLGGPPKISDLADLRPLDLRAFMAERRREGAGARTL 91 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ-------QFKSFW 186 + L +R + R+ + PK+ +P + D + Q Sbjct: 92 GRGLAGIRSFLRHLERKGLANAAGATATRAPKQPKSLPKPLSARDARRVVDADLQLSDEP 151 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPD------ 239 ++ L GLR S++ + + S++ T K G V L Sbjct: 152 WIAARDAAVLTLLYGCGLRISEALGLTRNDIPRDGESLRITGKGGKTRIVPLLPIARSAI 211 Query: 240 -GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATI 296 +++L P F + +A + + + H +R AT Sbjct: 212 SDYLELSPFRPAADAPMFRGARGCPLQPAIVQKAMRALRSALDLPETATPHALRHSFATH 271 Query: 297 SADAGATAHELMATYGWKTVDQAETYT 323 G + G ++ + YT Sbjct: 272 LLAGGGDLRTIQELLGHASLSTTQVYT 298 >gi|291550383|emb|CBL26645.1| Site-specific recombinase XerD [Ruminococcus torques L2-14] Length = 356 Score = 98.6 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 46/282 (16%), Positives = 94/282 (33%), Gaps = 45/282 (15%) Query: 100 DQIIRKSGDFDYRKITTKHIRSGVESRK-----------HTPSSAIQFLTSMRVLFKWAV 148 + I + D ++ I E K +T + ++++R + + Sbjct: 72 NYTIEQFEVHDLERLEPVDIEEYQEYLKVYKNDEEKCITNTEKGLARKMSALRSFYGYYF 131 Query: 149 RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG----------------SQP 192 +++ ++ NP L VE PK + I +++ + G ++ Sbjct: 132 KRQIISKNPTLLVEMPKMHEKAIIRLDTDEIAMLLDYVDHGGDNLTGQRKAYFEKTKNRD 191 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLA---- 246 LL +G+R S+ +Q + NN ++ T+K G + V + L Sbjct: 192 LAILTLLLGTGIRVSECVGLDLQDIDFKNNGITV-TRKGGNQMVVYFGEEVENALKTYLY 250 Query: 247 -----MTPIGKE--TFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS 297 P+ F++ +++M K A + NK + H +R T Sbjct: 251 TTRKQAIPLSGHENALFLSTQRKRMGVQAVENMVKKYAREVTPNKKITPHKLRSTYGTAL 310 Query: 298 ADAGATAHELMATYGWKTVDQA-ETYTK-GADRIRLGIKNSR 337 + + G K V+ + Y DR R + Sbjct: 311 YKETGDIYLVADVLGHKDVNTTKKHYAAIDEDRRRQAAGAVK 352 >gi|193212222|ref|YP_001998175.1| integrase family protein [Chlorobaculum parvum NCIB 8327] gi|254799328|sp|B3QM22|XERC_CHLP8 RecName: Full=Tyrosine recombinase xerC gi|193085699|gb|ACF10975.1| integrase family protein [Chlorobaculum parvum NCIB 8327] Length = 336 Score = 98.6 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 40/289 (13%), Positives = 89/289 (30%), Gaps = 49/289 (16%) Query: 85 GSLAVNSRISFE----SYFDQIIRKSGDFDYRKITTKHIRSG--------VESRKHTPSS 132 +++ + ++ YF + ++G + + + + + P S Sbjct: 31 RNVSPKTVTAYRCDLLQYFSFLKEQAGLDRLEAVEPERVEVADVRLFMGHLLDKGIQPRS 90 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----- 187 + L S++ +++ + ++ +P V P+ + R ++E+ +Q + Sbjct: 91 IARKLASVKSFYRFLLETGRISSSPLSLVVTPRLDKKVPRFVSEEEARQLFRRFESQEDN 150 Query: 188 ---------------EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN-NIFSIKTQKTGT 231 E + R E L GLR S+ + + F T K Sbjct: 151 AALQGDGKKAEVRQFETFRDRAVLEVLYGCGLRLSELIALERADVDLVHGFLKVTGKGRK 210 Query: 232 IITVELPDGFMKLLAM--------------TPIGKETFFINNDKQKMNATQFSIWFKAK- 276 V L + ++ L F+ + +++ K Sbjct: 211 QRIVPLGEPAVEALRKYFEVRRNFFRIPLERTGESSRVFVTSRGRQLYPMLVQRMTKRYL 270 Query: 277 -ATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 K+ H +R AT + GA + G ++ E YT Sbjct: 271 TPVSESEKKNPHILRHSFATHMLNGGADLKSVSEMLGHSSLTTTELYTH 319 >gi|308235890|ref|ZP_07666627.1| site-specific tyrosine recombinase XerC [Gardnerella vaginalis ATCC 14018] gi|311115014|ref|YP_003986235.1| tyrosine recombinase XerC [Gardnerella vaginalis ATCC 14019] gi|310946508|gb|ADP39212.1| tyrosine recombinase XerC [Gardnerella vaginalis ATCC 14019] Length = 357 Score = 98.6 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 43/312 (13%), Positives = 90/312 (28%), Gaps = 66/312 (21%) Query: 77 EYRKSAHWGSLAVNSRISFE---SYFDQIIRKSGDFDYRKITTKHIRSG--VESRKHTPS 131 +Y +S L + ++ + + D ++T +R ++ H S Sbjct: 31 DYLRSN--KGLGSRTLRAYRVDVLQCLEWCGVNDLSDLNSVSTSVLRQWMYWLNKNHARS 88 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS- 190 S + + ++R F W ++ NP + PK E + ++ + S Sbjct: 89 SLARKVVAVRGFFAWTTHVGLISANPAQILNTPKIVNELPTVLDEAQAEKLLDCAEDRSE 148 Query: 191 --------------------------------------------QPRLAFEFLLYSGLRC 206 + E L +G+R Sbjct: 149 DYAVDKSPATEHQENTPLKSQIKMRIKSKIKSQTKTKQEYVIALRNAAILELLYATGMRV 208 Query: 207 SDSCRAGVQHLQNNIFSIKTQKTGTIITV-----ELPDGFMKLLAM--------TPIGKE 253 + VQ + ++K G V K L + + Sbjct: 209 GELTGLNVQDMDFENHTVKVTGKGNKQRVVPFGVPAAKACKKWLDCGRSALQEKSAASSQ 268 Query: 254 TFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYG 312 F+ ++++ A A V + + H +R +AT + GA E+ G Sbjct: 269 ALFLGVRAKRIDQRIVRSIVHEAAAAANVPDVAPHALRHSAATHMLNGGADLREVQELLG 328 Query: 313 WKTVDQAETYTK 324 +++ + YT Sbjct: 329 HSSLNTTQRYTH 340 >gi|209542780|ref|YP_002275009.1| site-specific tyrosine recombinase XerC [Gluconacetobacter diazotrophicus PAl 5] gi|209530457|gb|ACI50394.1| integrase family protein [Gluconacetobacter diazotrophicus PAl 5] Length = 324 Score = 98.6 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 50/309 (16%), Positives = 99/309 (32%), Gaps = 49/309 (15%) Query: 70 TLKWLISEYRK-SAHWGSLAVNSRISFESYFDQIIRKSGD--------FDYRKITTKHIR 120 T L + + + ++ D+ + G +++ +R Sbjct: 2 TGADLRDAFLDWMRDERRASPLTIAAYRGDLDRFLDFIGAHVGGTVDLAVLDRLSLADLR 61 Query: 121 SGVE--------------SRKHTP----SSAIQFLTSMRVLFKWAVRQEYVAINPCLSV- 161 + + R TP + + +++MR +++ R+ + NP + Sbjct: 62 AWLAFEHAQGHALAQRDRGRSSTPDRAARTRARRVSAMRSFYRYLARR-HGVTNPAPGLL 120 Query: 162 ERPKRKTEGIRPWTKEDMQQF------KSFWSEGSQPRLAFEFLLY-SGLRCSDSCRAGV 214 P+ K+ RP ++ + G A LLY GLR S++ V Sbjct: 121 AAPRTKSPLPRPLSEAQALDVPDGVGDLAVTPLGQARDAALFLLLYGCGLRISEALGLDV 180 Query: 215 QHLQ----NNIFSIKTQKTGTIITVELPDGFMKLL------AMTPIGKETFFINNDKQKM 264 + L + K G V + ++L P+ F ++ Sbjct: 181 RDLDHALSAGGTLLVRGKGGRERLVPILPAVARVLTDWRARHPAPLPDAPLFPGVRGGRL 240 Query: 265 NATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 +A AG+ + + H +R AT + GA + G ++ + Y Sbjct: 241 QPAVAQRAMRAWRDMAGLPDHATPHALRHSFATHLMEGGADLRTIQELLGHASLSTTQRY 300 Query: 323 TKGADRIRL 331 T AD RL Sbjct: 301 T-LADEARL 308 >gi|118463502|ref|YP_881424.1| integrase fusion protein [Mycobacterium avium 104] gi|118164789|gb|ABK65686.1| traSA:integrase fusion protein [Mycobacterium avium 104] Length = 382 Score = 98.6 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 61/372 (16%), Positives = 123/372 (33%), Gaps = 47/372 (12%) Query: 2 TPSLRLPPFVTKERT--RHGK-IIYYF-----RKGHGRRIRLPYPHESTFIPAYMSALTG 53 T ++R P + RHG+ + + + R ++ +A+ Sbjct: 5 TKTVRDPDDTIRTVPSARHGRGMRWRATYVDDQSREHSRSFGRKVDAQRWLDEVTAAVVT 64 Query: 54 STPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYR 112 P+ T + +RK +SR E+ + GD Sbjct: 65 GQ-----YVDPKAGQITFRDYAERWRKM---QVQRPSSRAHIETMLRRHAYPTLGDRQLT 116 Query: 113 KITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172 I +++ V+ + P++ + + K A+R +A NPC + PK + I Sbjct: 117 SILPSDVQAWVKGLQLAPATVGVVHGLVSTVMKSAIRDRRLAANPCDGTKLPKVQRPQIV 176 Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQ--- 227 P T E ++ ++ Q + +GLR + V ++ + ++ Q Sbjct: 177 PLTTEQVEAVRAELPAELQALV--TLAAGTGLRQGECFGLTVDRVRFLERVLTVDRQLVT 234 Query: 228 -----------KTGTI-ITVELPDGFMKLLAMTPIGK----ETFFINNDKQKMNATQFSI 271 KT + LP LA + + + + F Sbjct: 235 VAGQAPTFGPPKTRASNRAIPLPKVVADALAAHLAAFPAEPDGLVFTQQGKPITRSTFGY 294 Query: 272 WFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKT-VDQAETYTK---- 324 ++A +A + H +R + A++ G + + A G + V+ +TY+ Sbjct: 295 RWRAAVKEAKLPHGTGFHALRHYYASLLIRHGESVKTVQARLGHASAVETLDTYSHLWPD 354 Query: 325 GADRIRLGIKNS 336 DR R I + Sbjct: 355 SDDRTRDAIDSV 366 >gi|303326955|ref|ZP_07357397.1| tyrosine recombinase XerD [Desulfovibrio sp. 3_1_syn3] gi|302862943|gb|EFL85875.1| tyrosine recombinase XerD [Desulfovibrio sp. 3_1_syn3] Length = 331 Score = 98.6 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 46/284 (16%), Positives = 98/284 (34%), Gaps = 37/284 (13%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQI----IRKSGDF-DYRKITTKHIRSGVE- 124 L WL + + ++ ++ + Q+ + D +++ KHI++ + Sbjct: 35 LSWLAVQ-------KGASDATQKAYGADLTQLAVFLREQGADLARPGEVSRKHIQAFLAW 87 Query: 125 --SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 R SS + L ++R F++ +R V+ N V P+++ R ++ Sbjct: 88 LFRRGEAKSSMARKLAAVRSFFRFLLRSGRVSENVAAQVRNPRQEKHHPRALNVDETFAL 147 Query: 183 KSFWSEG-----------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231 + E L SGLR S++ + Q ++ G+ Sbjct: 148 LDTPKAAPPSEAHAARLLCRDLALAELLYGSGLRISEALSLDLDDAQLRSRVLRVMGKGS 207 Query: 232 IITV-ELPD--------GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282 + L D + + ++ F+ ++N + + +AG+ Sbjct: 208 RERLSPLSDTSCEALAAWLAERSYLALPEEQALFVGARGARLNRREAARIIAGLCRRAGL 267 Query: 283 --NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 S H +R AT AGA + G + + + YT+ Sbjct: 268 AFTVSPHSLRHSFATHLLAAGADLRSVQELLGHRRLTTTQRYTQ 311 >gi|2251178|emb|CAB10656.1| XerC protein [Mycobacterium leprae] Length = 302 Score = 98.6 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 37/273 (13%), Positives = 93/273 (34%), Gaps = 27/273 (9%) Query: 86 SLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRKHTPSSA---IQFLTSM 140 + ++R ++ ++ +++ +RS + + ++ + ++++ Sbjct: 21 GRSEHTRRAYLGDLRSLLTHLEGRGSRLDQLSLPVLRSWLATAAGAGAARTTLARRISAV 80 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS--------QP 192 + WA + +A +P ++ P+ ++ Q + G+ + Sbjct: 81 KAFTAWAKWRGQLAADPAARLQVPRAYRTLPAVLRQDQALQIMAAAKSGAEQGDPLALRD 140 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT-----VELPDGFMKLLA- 246 RL E L +G+R S+ C + + ++ G V D L Sbjct: 141 RLIVEMLYATGIRVSELCGLDIDDVDTRHRLVRVLGKGNKQRTAPFGVPAADALRGWLDD 200 Query: 247 -----MTPIGKETFFINNDKQKMNATQFSIWFKA--KATKAGVNKSAHGVRKFSATISAD 299 +T + + ++++ Q + HG+R +AT + Sbjct: 201 GRPALVTVESGPALLLGSRGRRLDVRQARTVVHQTVAVVAGAPDMGPHGLRHSAATHLLE 260 Query: 300 AGATAHELMATYGWKTVDQAETYTKGA-DRIRL 331 GA + G ++ + YT A R+R+ Sbjct: 261 GGADLRVVQELLGHSSLATTQLYTHVAVSRLRV 293 >gi|330830137|ref|YP_004393089.1| phage integrase [Aeromonas veronii B565] gi|328805273|gb|AEB50472.1| Phage integrase [Aeromonas veronii B565] Length = 321 Score = 98.6 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 42/279 (15%), Positives = 85/279 (30%), Gaps = 39/279 (13%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---- 126 L L+ + ++ + +S + GD T + + E+R Sbjct: 40 LSDLVELWFG---RHGQSLRDGEARKSKLLTVCHYLGDPLAVNFTARDFAAYREARLSGD 96 Query: 127 ------------KHTPSSAIQFLTSMRVLFKWAVRQE-YVAINPCLSVERPKRKTEGIRP 173 TP++ + +R +F R + + NP + K + Sbjct: 97 ITDRRAINQEKQGVTPNTVNREHAYLRAVFNELKRLGEWQSENPLDGLRAYKVAEAELAF 156 Query: 174 WTKEDMQQFKSFWSEGSQP--RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231 +++++ + +E P L + L +G R S+ + N + K+ Sbjct: 157 LYPDELKRLLAACAESPNPDLLLVVKLCLATGARWSEVEELTQSQVSPNRITFTRTKSKK 216 Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA----H 287 +V + A P + F + + F+ +AG+ A H Sbjct: 217 SRSVPISPEL---YAQLPRKRGRLFSDCYR----------AFEMVVERAGLELPAGQNTH 263 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 +R A+ G L G T+ Y A Sbjct: 264 VLRHTFASHFMMNGGNILVLQKILGHSTIAMTMRYAHFA 302 >gi|198241749|ref|YP_002215264.1| integrase [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|197936265|gb|ACH73598.1| integrase [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|326623011|gb|EGE29356.1| integrase [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 359 Score = 98.6 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 49/285 (17%), Positives = 92/285 (32%), Gaps = 30/285 (10%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--- 126 T+ I Y +L+VN+ + + K G+ + TT+HI +ES Sbjct: 75 TVSAWIDRYEVLLQRRNLSVNTYKIRSNQLATVREKMGEIILAEATTRHIAKFLESWITE 134 Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQEYVAINP--CLSVERPKRKTEGIRPWTKEDMQQFK 183 K+T + A++ + + +F+ A+ + ++ NP + K E ++ T + Sbjct: 135 GKNTMAGAMR--SVLSDMFREAIVEGHIVKNPVEATRIPEIKVARERLQLETYNATRTAA 192 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243 LA + L +G R D + +N + KTG I + L Sbjct: 193 EHLPVWFP--LAMDLALVTGQRREDIVNMKFSDVVDNRLYVTQIKTGMKIAIPLSLTLEA 250 Query: 244 --------LLAMTPIGKETFFI------NNDKQKMNATQFSIWFKAKATKAGVNKS---- 285 + + + I N+ ++ + F +GVN S Sbjct: 251 PGLRLGTVIDRCRLVSRTDIMISAGIRKNSPTGNIHPDGLTKTFVKARKASGVNFSNNPP 310 Query: 286 -AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 H +R A G + + Y D Sbjct: 311 TFHEIR-SLAGRLYKNEHGEVFAQKLLGHTLANTTKLYLDERDDK 354 >gi|154504725|ref|ZP_02041463.1| hypothetical protein RUMGNA_02232 [Ruminococcus gnavus ATCC 29149] gi|153794899|gb|EDN77319.1| hypothetical protein RUMGNA_02232 [Ruminococcus gnavus ATCC 29149] Length = 288 Score = 98.6 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 34/274 (12%), Positives = 97/274 (35%), Gaps = 18/274 (6%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH---TP 130 + + ++ +L S +++Y + K + + +++T + +R + ++K Sbjct: 10 YLEQLEEAGKIRNLKDRSISCYKNYVSYFL-KYQNKNPKELTCQDVRVFLLAKKEEGLKA 68 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 ++ + +++R ++ + + ++V R + + T ++ + + Sbjct: 69 TTLNLYNSAIRFFYRNVLHILWDD----ITVPRMILEHKLPTVLTASEIDRLLDAVDD-I 123 Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE------LPDGFMKL 244 + + F + SG+R S+ + + I + T + D + Sbjct: 124 KYKAMFAVMYSSGMRVSEVIHLHYDDISRSNMQIHVRDTKNRMDRYTILSKRCLDILTQY 183 Query: 245 LAMTPIGKETFFINND-KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAG 301 + F N + + + + K + H +R AT + G Sbjct: 184 WFEKGRPRGILFPNKFTGNYLTVSTLEQVMRRAVADTELPKAATPHCLRHSFATHLMEQG 243 Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335 H + A G + E Y +++ +GI++ Sbjct: 244 IERHNIQALLGHRDPKSTEVYLHVSNKSLMGIQS 277 >gi|91974776|ref|YP_567435.1| tyrosine recombinase XerD [Rhodopseudomonas palustris BisB5] gi|91681232|gb|ABE37534.1| tyrosine recombinase XerD subunit [Rhodopseudomonas palustris BisB5] Length = 351 Score = 98.6 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 41/287 (14%), Positives = 88/287 (30%), Gaps = 38/287 (13%) Query: 80 KSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139 SA+ Y + + D + + + +++R SS + L++ Sbjct: 55 ASANTIDAYRRDLADLSHYLTRSRKSIASADTEAL--RGYLADLDARGFKSSSVARRLSA 112 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS------------ 187 +R LF++ + + +P + PKR + + D+ + + Sbjct: 113 LRHLFRFLLSERIRVDDPAAILSGPKRGRGLPKVLSIADVDRLLGYARQQAEAADGAGGV 172 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFMKLLA 246 ++ E L +GLR S+ + + + K V L + + Sbjct: 173 RAARLYCLLEVLYATGLRVSELVSLPSSAARGDARMIVVRGKGDKERLVPLNHSAKQAMT 232 Query: 247 M-----------------TPIGKETFFINNDK--QKMNATQFSIWFKAKATKAGVN---K 284 + + + F+ K A +AG++ Sbjct: 233 RYLATAAAAEKAAATATKAGSKGSKWLFPSFGESGHLTRQHFARDLKDLAGRAGLSPRLV 292 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA-DRIR 330 S H +R A+ GA + G + + YT DR++ Sbjct: 293 SPHVLRHAFASHLLHNGADLRIVQTLLGHSDISTTQIYTHVVEDRLK 339 >gi|314931491|gb|EFS95322.1| site-specific recombinase, phage integrase family [Propionibacterium acnes HL067PA1] Length = 420 Score = 98.6 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 57/373 (15%), Positives = 115/373 (30%), Gaps = 51/373 (13%) Query: 23 YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSA 82 +Y + G +R+R + L PR TL ++ + + Sbjct: 27 FYDKNGTKQRVRGRGATRAEATKRLNKNLRQRIDGTRTATGPRGGL-TLNQWVNIWLATK 85 Query: 83 HWGS-LAVNSRISFE-SYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA-IQFLTS 139 + + + Y I K G +++T + I+ + + + + + Sbjct: 86 QASEQMKPQTAQQHKIRYKQWIAPKLGSRPVKRLTAEEIQEVIAAGAQQGHAIPVNIFKT 145 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEG-------IRPWTK--EDMQQFKSFWSEGS 190 M AV+ V +N + P++++ I W++ + M ++ + Sbjct: 146 MNAALNSAVKAGEVDLNSMKQLTPPRQRSAAGEKDTAHIEYWSRIMDKMCKWLAQPECEL 205 Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQ---------------KTGTII 233 R + GLR ++ N +IK Q KTG Sbjct: 206 HDRYTLTIAMLLGLRRAELLGLTWDCFDECMNKLTIKQQLMRQNDGSYIIQNSTKTGKNR 265 Query: 234 TVELPDGFMK---------LLAMTPIGKETFFINNDKQKMNATQFSIWFKA----KATKA 280 T+ LP+ + + L A P F+ + + ++ ++ K Sbjct: 266 TLMLPERWKEAFLLQRQKSLTAAAPEWNNLVFLTPAGGPITYSMYNKLWRNTIVTYMAKE 325 Query: 281 GVNK-------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT-KGADRIRLG 332 G H RK A+ A G M+ G + YT AD+ R Sbjct: 326 GQEWKEEQHYWRPHTCRKMCASWLAWGGVDIQTAMSILGHSSEAMTLYYTIINADQQRKA 385 Query: 333 IKNSRRISSVVDS 345 ++ + + Sbjct: 386 LEGLSNVYEHHNV 398 >gi|239905618|ref|YP_002952357.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1] gi|239795482|dbj|BAH74471.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1] Length = 382 Score = 98.6 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 46/291 (15%), Positives = 94/291 (32%), Gaps = 31/291 (10%) Query: 53 GSTPKREYINSPRKKPT--TLKWLISEYRKSAHWGSLAVNSRISFESYFDQI-IRKSGDF 109 + P +++ + P L L S+Y + E + + I GD Sbjct: 76 ATAPIQDFNQVTGRVPGGMVLSELGSKYLAHMKASGRTEKHIRNIEHLVNHVFIPVLGDK 135 Query: 110 DYRKITTK--------HIRSGVESRK--HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCL 159 ++ + H + + + ++ + +F + + + ++NP Sbjct: 136 PVDSLSYQENMIPFILHFQGVSSRTGKVRSQYTVNKYCDYLSFIFNFGIDNGFTSVNPLK 195 Query: 160 SVERPKRKTEGIRPW----TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSD--SCRAG 213 ++PK + PW T +D ++ + A E G R + Sbjct: 196 IWKKPKVQ-----PWDMKLTLDDAKKIMVNAEP--HLKWAMEVCFNLGTRPGESELLSLK 248 Query: 214 VQHLQNNIFSIK--TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI 271 + + +++ KT + TV + F+K L +T ++ N T Sbjct: 249 WEDIDFKASTVRIYASKTKSYRTVPINPEFLKRLEKEQAESQTGYVIEY-MGRNLTTIRK 307 Query: 272 WFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320 FK +AG+ + +R AT GA + G TV Sbjct: 308 AFKNACKRAGITYQTRMYDLRHLFATTLLRKGADLAAVSKMMGHSTVKMTA 358 >gi|56697962|ref|YP_168333.1| site-specific tyrosine recombinase XerC [Ruegeria pomeroyi DSS-3] gi|56679699|gb|AAV96365.1| tyrosine recombinase XerC [Ruegeria pomeroyi DSS-3] Length = 306 Score = 98.6 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 39/242 (16%), Positives = 74/242 (30%), Gaps = 19/242 (7%) Query: 101 QIIRKSGDFDYRKITTKHIRSGVESRKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINP 157 G +I +R+ + + S + L++++ ++W +E Sbjct: 47 HFGATQGLAPLARIGVPDMRAWMAQMRADGIGARSLARKLSAVKSFYRWLAEREGFEPTA 106 Query: 158 CLSVERPKRKTEGIRPWTKEDMQQFKSFWS-------EGSQPRLAFEFLLYSGLRCSDSC 210 LS PK + + RP ++ + ++ L GLR S++ Sbjct: 107 VLSTRAPKFQRKLPRPLAEDAARAMIDTVELQSSKPWIAARDMAVVTLLYGCGLRISEAL 166 Query: 211 RAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL------LAMTPIGKET-FFINNDKQK 263 + K G V + L P+ ET F Sbjct: 167 SLTGRAAPLPATLRIRGKGGKERLVPVIPVARAAVDTYLRLCPWPVEPETPLFRGARGGP 226 Query: 264 MNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAET 321 +NA + G+ +A H +R AT +AG + G ++ + Sbjct: 227 LNARSIQAVMAKARMQLGLPATATPHAMRHSFATHLLEAGGDLRAIQELLGHASLSTTQA 286 Query: 322 YT 323 YT Sbjct: 287 YT 288 >gi|256027362|ref|ZP_05441196.1| integrase/recombinase [Fusobacterium sp. D11] gi|289765331|ref|ZP_06524709.1| integrase/recombinase [Fusobacterium sp. D11] gi|289716886|gb|EFD80898.1| integrase/recombinase [Fusobacterium sp. D11] Length = 328 Score = 98.6 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 42/295 (14%), Positives = 96/295 (32%), Gaps = 44/295 (14%) Query: 88 AVNSRISFESYFDQIIR--KSGDFDY---------RKITTKHIRSGV----ESRKHTPSS 132 + + + + + G+ D+ + I + + + + E RK +S Sbjct: 33 SEKTVKDYMFHLKDFLHFVYDGENDFSISEVIPLMQNIEKEDVEAYIVHLFEDRKLKKTS 92 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW--TKEDMQQFKSFWSEGS 190 L++++ L+K NP ++ K + +D+++ + S Sbjct: 93 VNTILSALKSLYKELESNGL--KNPVKYIKLFKVNRNIENILKVSIDDIRKIIGLYKIDS 150 Query: 191 QPR----LAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVELPDGFM 242 + + L Y+G+R + +H F + K+G + + + Sbjct: 151 EKKYRNITILYTLFYTGMRSKELLTLQFKHYLKRENEYFFKLIETKSGKDVYKPIHKSLV 210 Query: 243 K-------------LLAMTPIGKETFFINN--DKQKMNATQFSIWFKAKATKAGVNKSAH 287 K L + + K+ F + + ++ + + G + S H Sbjct: 211 KKLEEYKEYLMNMYSLDLKDLDKKYIFSTSVLNNSPLSYRSLNAIIQDMGKLIGKDISPH 270 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342 +R AT + +GA E+ G E Y R L K ++ + Sbjct: 271 NIRHAIATELSLSGADILEIRDFLGHSDTKVTEVYINA--RSILEKKVLEKLPEI 323 >gi|291557209|emb|CBL34326.1| Site-specific recombinase XerD [Eubacterium siraeum V10Sc8a] Length = 301 Score = 98.6 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 48/276 (17%), Positives = 94/276 (34%), Gaps = 28/276 (10%) Query: 75 ISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133 I+EY + + +L + ++ + Q S + I +I G R+ P +A Sbjct: 7 ITEYLRYCSEQRTLNSKTTKAYRTDLLQFAEFSSGMFSKDIIISYI--GCLHRQFKPKTA 64 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVE------RPKRKTEGIRPWTKEDMQQFKSFWS 187 + + S++ + + QE + NP ++ K + ++ + F Sbjct: 65 RRKIASLKAFAHYLMIQEIINANPFDKIDTSFREPMVLPKVIPMNIISEILANAYDVFCQ 124 Query: 188 EGS--------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI---ITVE 236 + + E L +G R S+ C + +IK G+ I +E Sbjct: 125 CNTDFSRRNAVRNIAVLEILFATGARVSEICTLTPDMVDLTNHTIKIFGKGSRERIIQIE 184 Query: 237 LPDGFMKL------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHG 288 PD L + FF+N Q++ + +A G NK + H Sbjct: 185 NPDVLEALNRYYETFRSDILESGFFFVNKLHQRLTEQSVRVMISNQAAAIGYNKHITPHM 244 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 R AT+ + + G ++ + YT Sbjct: 245 FRHSFATLLLEEDVDIRYIQKILGHSSIATTQIYTH 280 >gi|157826278|ref|YP_001493998.1| site-specific tyrosine recombinase XerC [Rickettsia akari str. Hartford] gi|166918897|sp|A8GQ15|XERC_RICAH RecName: Full=Tyrosine recombinase xerC gi|157800236|gb|ABV75490.1| site-specific tyrosine recombinase XerC [Rickettsia akari str. Hartford] Length = 305 Score = 98.6 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 43/258 (16%), Positives = 97/258 (37%), Gaps = 28/258 (10%) Query: 110 DYRKITTKHIRSGVESRKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166 + + IRS + R + T SS + L++++ +++ + + + S++ PK+ Sbjct: 54 HIKNADIRLIRSWLAKRNYDNFTTSSIARGLSAVKNFYRFLEKTTQLNSHIIFSIKSPKK 113 Query: 167 KTEGIRPWTKED-------MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN 219 + +++D ++++ + + + + SGLR S++ HLQN Sbjct: 114 TKLLPKALSEDDVVVSLEHIEEYGNVKWVELRNKSLLVLIYASGLRISEALSITKLHLQN 173 Query: 220 NIFSIKTQKTGTIITVELPD-------GFMKLLAMTPIGKETFFINNDKQKMNATQFSIW 272 F K + ++++L E F +K+ F+ Sbjct: 174 LEFIRIIGKGSKERIIPWLPIAKNLITQYLEILPYKLGDNEPIFRGKRGKKLQPQVFNRE 233 Query: 273 FKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 G+ + +AH R A+ + GA + G K++ + YTK Sbjct: 234 LIKLKHFYGLPQHLTAHSFRHSFASHLLERGAELRSIQELLGHKSLSTTQNYTK------ 287 Query: 331 LGIKNSRRISSVVDSDDP 348 + +R+ +V + P Sbjct: 288 ---TSIKRLEAVYTTAYP 302 >gi|323138436|ref|ZP_08073505.1| integrase family protein [Methylocystis sp. ATCC 49242] gi|322396232|gb|EFX98764.1| integrase family protein [Methylocystis sp. ATCC 49242] Length = 428 Score = 98.6 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 58/379 (15%), Positives = 122/379 (32%), Gaps = 52/379 (13%) Query: 19 GKIIYY--FRKGHGRRIRLPYPH----ESTFIPAYMSALTGSTPKREYI---NSPRKKPT 69 GK +YY +R G R R+ + A G K + + R++ Sbjct: 37 GKRVYYVDYRNAGGARKRMKIGDHGKITTDEARKMALATLGGVVKGDDPLTERTTRRESI 96 Query: 70 TLKWLISEYRKSAH----WGSL----AVNSR-ISFESYFDQIIRKSGDFDYRKITTKHIR 120 T+K L ++Y +A +G ++ I+ G +++T + Sbjct: 97 TVKELCADYMAAAEKGLIFGKKRRPKKPSTISQDHARIDRHIVPLLGKKLVKELTRADVA 156 Query: 121 S----------GVESRKHTPS----------SAIQFLTSMRVLFKWAVRQEYVAINPCLS 160 ++ P +A + + + WAV + + NP Sbjct: 157 KFIRDVTTGKTALDLPSDKPRGRVIVRGGAGTAARAANFLGAVLTWAVHEGIIDSNPAHG 216 Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFE------FLLYSGLRCSDSCRAGV 214 V+R + + R T ++ + + + ++ + +G R + + Sbjct: 217 VKR-QADQKRTRRLTPDEYRALGNALRQAEDEMATWQGVAGARLITLTGCRLGEIAKLRW 275 Query: 215 QHLQNNIFSIKTQKTGTII-TVELPDGFMKLLAMTPI--GKETFFINNDKQKMNATQFSI 271 + + Q T T + +LA G + Sbjct: 276 SEVDEAAGCFRLQDTKEGASTRPMGRAVFDILAGVDRVDGSPYVLPAVRGTG-AYGGLTG 334 Query: 272 WFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 +F+ A +AG+ + H +R A+ +AD G + A G Y D + Sbjct: 335 FFEKVAARAGLQGVTPHTMRHSFASTAADLGFAESTIAAMLGHAAGSVTARYVHHLDAVL 394 Query: 331 LGIKN--SRRISSVVDSDD 347 + + + RIS+++D + Sbjct: 395 IAAADRVAARISAMLDGRE 413 >gi|302878736|ref|YP_003847300.1| integrase family protein [Gallionella capsiferriformans ES-2] gi|302581525|gb|ADL55536.1| integrase family protein [Gallionella capsiferriformans ES-2] Length = 328 Score = 98.6 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 51/319 (15%), Positives = 104/319 (32%), Gaps = 33/319 (10%) Query: 23 YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSA 82 YYF + I L Y A+ K + P L ++ Y K Sbjct: 22 YYFVNTDNKWIPLG--------KEYCIAMQ----KWAAMLQPVIGKQRLSSVMDTYIKE- 68 Query: 83 HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRV 142 ++ + + + GD + K+I + + ++ P + + + + Sbjct: 69 ELPLRKPLTQTDYLASLAILRPVFGDMFPEDVEPKNIYAFM-RMRNAPVRSNRDVAVLSN 127 Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS 202 + A++ + NPC V R ++ F E Q + + L + Sbjct: 128 VMNQAIKMGLINTNPCKQVRRNVENPRTREVL-DSEIVAFLPHCPEWLQAYIRLKLL--T 184 Query: 203 GLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF----FIN 258 GLR D + L+ + ++T K G + D ++ + IN Sbjct: 185 GLRQGDMLSIRLDQLREDGLFVQTWKRGKKLLFSWSDNLRTIVETIKSLRHRVTSLHLIN 244 Query: 259 N--DKQKMNATQFSIWFKAKATKAGVNKSA------HGVRKFSATISADAGATAHELMAT 310 + D K+ + F + +A S + +R AT + + G A ++ Sbjct: 245 SDRDGTKLTTSGFKSAWARAMKRAIEAGSLTETFAENDLRAKVATEARELGQNATKI--- 301 Query: 311 YGWKTVDQAE-TYTKGADR 328 G + + Y +G + Sbjct: 302 LGHSSDAVTKRHYERGTSK 320 >gi|226355111|ref|YP_002784851.1| Tyrosine recombinase xerC-like protein [Deinococcus deserti VCD115] gi|226317101|gb|ACO45097.1| putative Tyrosine recombinase xerC-like protein [Deinococcus deserti VCD115] Length = 379 Score = 98.6 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 59/351 (16%), Positives = 106/351 (30%), Gaps = 46/351 (13%) Query: 28 GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT--------TLKWLISEYR 79 G G + L Y + Y SA T + + + ++ TL + + Sbjct: 19 GWGGYVTLGYGPDGKQQRRYFSAKTQAEAREKLQALVSERNGGCLSSETLTLAAYLDRWL 78 Query: 80 KSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQ 135 + N+ S+E I + G K+T HI V + + A+ Sbjct: 79 THKQ-RDVKFNTHRSYEMTARVHIKPRLGKVQLDKLTPLHIEELVSALLAEGQSAKVALG 137 Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA 195 + +R AVR + V N SV PK + ++ WT ++ +F + E + Sbjct: 138 CVKLLRTALTQAVRWQLVGRNVAQSVTPPKHTPKEMQVWTPDEASRFLAVAREH-RLYAL 196 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ---------------KTG-TIITVELPD 239 F L +G+R + + + ++ Q KT + T+ L Sbjct: 197 FYLALATGMRRGELLGLKWESINMLAGTLVVQHNLIDRVSSVTLETPKTRASRRTIALSP 256 Query: 240 GFMKLLAMTPIG--------------KETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284 ++ L F ++ M F+ KA V Sbjct: 257 DTVEALRAHRHSQWLEQCKAGEKWQEHGMVFPSDVGTLMFPANLMGAFRRLCAKARVPAI 316 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGADRIRLGIK 334 H +R SA++ A + G Y + R Sbjct: 317 RLHDLRHTSASLLIRANVPPKVVADRLGHTDPGFTLRVYAHVYEEQRRAAA 367 >gi|323139749|ref|ZP_08074786.1| integrase family protein [Methylocystis sp. ATCC 49242] gi|322394986|gb|EFX97550.1| integrase family protein [Methylocystis sp. ATCC 49242] Length = 331 Score = 98.6 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 51/271 (18%), Positives = 88/271 (32%), Gaps = 30/271 (11%) Query: 91 SRISFES---YFDQIIRKSGDFDYRKITTKHIRSGVES--RKHTPSSAIQFLTSMRVLFK 145 +R ++ F + G I HI + VE+ R H+ +A Q L ++R+LF Sbjct: 53 TRRAYGRSIGEFLAWCEQRGLASIIDIDPLHIGAYVEALTRSHSAPTAKQRLAAIRMLFD 112 Query: 146 WAVRQEYVAINPCLSVERPKR--KTEGIRPWTKED----MQQFKSFWSEGSQPRLAFEFL 199 W V + + NP SV PK K E+ + + G + R + Sbjct: 113 WLVTGQIIPTNPAASVRGPKHVVKVGKTPVLDPEETRILLDSIDVTTTVGLRDRALIALM 172 Query: 200 LYSGLRCSDSCRAGVQH--LQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIG----- 251 +YS R + V+ +QN ++ +K G + L G Sbjct: 173 VYSFARVGAALAMKVEDVYVQNRRLWVRLHEKGGKRHEMPCHHNLESYLHAYIDGCYLAA 232 Query: 252 --KETFFINNDKQ-------KMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADA 300 K F + + + +A AG+ H R T Sbjct: 233 DPKAHLFRTIGRGTGELTLTPLPQANAYAMIRRRALAAGIATKVGNHSFRATGITAYLKN 292 Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRL 331 G T + + + + Y + D + L Sbjct: 293 GGTLEKAASMANHASTRTTQLYDRRRDEMSL 323 >gi|298375519|ref|ZP_06985476.1| mobilizable transposon, int protein [Bacteroides sp. 3_1_19] gi|298268019|gb|EFI09675.1| mobilizable transposon, int protein [Bacteroides sp. 3_1_19] Length = 347 Score = 98.6 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 45/234 (19%), Positives = 87/234 (37%), Gaps = 14/234 (5%) Query: 109 FDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168 +R+ + +R + +SA + ++ R L K A R +++ N +++ + + Sbjct: 116 KKFREYLLNAKQLKHSNRPISLNSASGYYSTFRGLLKIAYRDKWLRENINDYLDKIEPQD 175 Query: 169 EGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL-----QNNIFS 223 T ++++Q + + + A F +GLR SD + Q Sbjct: 176 VKKEYLTLDEVKQLAATPCDIPVLKAASLFACLTGLRISDILNLQWEDFAIAPDQGYCLR 235 Query: 224 IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283 I+TQKT T T+ + + L P + F + + + + K KAG+ Sbjct: 236 IRTQKTQTEATLPISYEAYE-LCGMPDTGKVF------KGLKRSMINYPLKNWLKKAGIT 288 Query: 284 K--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335 K + HG R A I G + + K V + Y + + N Sbjct: 289 KPITFHGFRHSYAVIQISLGTDIYTVSKMLTHKNVSTTQIYADLVNVKKRETAN 342 >gi|327413091|emb|CAX68120.1| shufflon-specific DNA recombinase [Salmonella enterica subsp. enterica] Length = 371 Score = 98.6 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 44/284 (15%), Positives = 93/284 (32%), Gaps = 35/284 (12%) Query: 63 SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI----IRKSGDFDYRKITTKH 118 R K L + +Y ++ + + F +I D +IT+ Sbjct: 2 KKRIKKMLLGKALDKYYRTVSVN------KRGYMQEFYRISVIKRSALADKCMDEITSVD 55 Query: 119 IRSGVESR----------KHTPSSAIQFLTSMRVLFKWA-VRQEYVAINPCLSVERPKRK 167 I ++R +P++ L + L+ A + NP V +P Sbjct: 56 IAEYRDARLGVVSKRTGRAISPNTVRLELGLLSALYNIARIEWGTCTHNPVEYVRKPPPS 115 Query: 168 TEGIRPWTKEDMQQF-KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSI 224 R T + ++ ++ Q F+ L + +R + +++ + + Sbjct: 116 PGRNRRLTSTEERRITRALRKRNPQQLAIFQLALETAMRQGEILALRWEYVDLHLGVAHL 175 Query: 225 KTQKTGTIITVELPDGFMKLLA--MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282 K GT V L ++L P+ F + F ++ + G+ Sbjct: 176 PVTKNGTARDVPLSYKARQVLREFAGPLSGPVF-------TYTSNGFKSAWRTLIAELGI 228 Query: 283 -NKSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTK 324 + H +R + + + G E+ A G K++ + YT Sbjct: 229 EDLHFHDLRHEAVSRLFELGTLNMMEVAAISGHKSLSMLKRYTH 272 >gi|302874927|ref|YP_003843560.1| integrase family protein [Clostridium cellulovorans 743B] gi|307690455|ref|ZP_07632901.1| integrase family protein [Clostridium cellulovorans 743B] gi|302577784|gb|ADL51796.1| integrase family protein [Clostridium cellulovorans 743B] Length = 276 Score = 98.6 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 46/268 (17%), Positives = 89/268 (33%), Gaps = 23/268 (8%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD--YRKITTKHIRSGVESRKHT 129 KW+I ++N+ S++ Q + K + + + + Sbjct: 6 KWIIK-----MREEDKSINTIESYKGDVIQFMNFIEKEPEEITKEDILKYKEYLALNEMS 60 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI--RPWTKEDMQQFKSFWS 187 SA + S+ F + + + + + +++ K + + KED + S Sbjct: 61 VKSANRKYISVNSFFSFLQTE--LEKDVQMRIKKDKIQNQEYLEEMLAKEDFENLVQVAS 118 Query: 188 EGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245 + R F L Y+G+R S++ + + N++ IK K V +P +L Sbjct: 119 SYNDYRAVAIFNTLFYTGMRISEALQLKTTDISNDVVVIK-GKGSKHRNVFIPQKLKSIL 177 Query: 246 -----AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSATIS 297 P + F K +N K A AG+ AH R Sbjct: 178 NTYMIYRLPCKSDALF-TGKKGPINRKTVDAIIKKYAAIAGISMTKAHAHNFRHLYCLTL 236 Query: 298 ADAGATAHELMATYGWKTVDQAETYTKG 325 + G T + G ++ YT+ Sbjct: 237 IEKGLTIDTVADLAGHSNINTTRIYTRK 264 >gi|223938389|ref|ZP_03630283.1| integrase family protein [bacterium Ellin514] gi|223892958|gb|EEF59425.1| integrase family protein [bacterium Ellin514] Length = 337 Score = 98.6 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 46/337 (13%), Positives = 103/337 (30%), Gaps = 52/337 (15%) Query: 55 TPKREYINSPRKKPTTLKW----LISEYRKSAHW-GSLAVNSRISFESYFDQI----IRK 105 P+ + P + T I + ++ ++ ++ + ++ Sbjct: 8 VPEGDPTPEPAEVSGTNSASEEKWIKTFLHHLAADRGASIYTQRNYRQTLVEFYGWHRKE 67 Query: 106 SGDFD----YRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV 161 G + + + + ++ ++R +K+ +R V+ +P +V Sbjct: 68 RGVEPAWENLHRDDFRGYLRFLGRGNLSRAAIQLRFCALRTFYKFLIRHGVVSASPIKNV 127 Query: 162 ERPKRKTEGIRPWTKEDMQQFKSFWSEGS------------------QPRLAFEFLLYSG 203 PK + + T + M + + + E + G Sbjct: 128 SLPKMEKRLPKFLTAQQMVELLGAPLKPLATPKKKGPGRPISATVCYRDVAILETIYSCG 187 Query: 204 LRCSDSCRAGVQHLQNNIFSIKTQKTGT-IITVELPDGFMKLLA-------MTPIGKETF 255 LR S+ C Q + N ++ + G V + + + + +P G Sbjct: 188 LRISELCGLTAQDIDWNEQLVRVRGKGKKERQVPIGEPALTAIRNYWSTLEQSPGGGSPV 247 Query: 256 FI--NNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATY 311 F+ ++ K AG++ + H +R AT DAGA + Sbjct: 248 FLGETEKAAALSPRVLQQRLKKYLALAGLDPSLTPHKLRHSYATHMLDAGADLRSVQELL 307 Query: 312 GWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348 G + + YT ++ R+ DS P Sbjct: 308 GHAHLITTQVYTHV---------STERLKRAYDSAHP 335 >gi|172041119|ref|YP_001800833.1| putative phage integrase [Corynebacterium urealyticum DSM 7109] gi|171852423|emb|CAQ05399.1| putative phage integrase [Corynebacterium urealyticum DSM 7109] Length = 265 Score = 98.6 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 43/256 (16%), Positives = 86/256 (33%), Gaps = 10/256 (3%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134 + ++ SL+ + + ++++ + +T + + + P + Sbjct: 7 LDKWGDYMTAASLSDETLYLRRRHVNRVLTHI-NKPLDDLTLDDLIDWLAQQNWKPETRR 65 Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194 + +S+R F W + N + R + RP D+ + ++ +L Sbjct: 66 GYRSSLRQFFAWREKAGLGE-NIARDLPRARLHRSLPRP--ARDVDILLALRKAPARTQL 122 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET 254 E + Y GLR + C+ L + + K G V LP + G Sbjct: 123 MIELMAYGGLRRGEVCKLRTCDLVGDTLRV-VGKGGHERFVPLPPHLSGQIRGMTAG--Y 179 Query: 255 FFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWK 314 F ++A +A AGV + H +R AT++ G + + G Sbjct: 180 LFPGRIDGHLSAAYVGKLI-GRALPAGV--TPHQLRHRFATVAYRKGRDIVAVQSLLGHA 236 Query: 315 TVDQAETYTKGADRIR 330 +D Y D R Sbjct: 237 KLDTTMIYVALDDSAR 252 >gi|114764172|ref|ZP_01443410.1| tyrosine recombinase [Pelagibaca bermudensis HTCC2601] gi|114543324|gb|EAU46340.1| tyrosine recombinase [Roseovarius sp. HTCC2601] Length = 308 Score = 98.6 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 39/263 (14%), Positives = 82/263 (31%), Gaps = 27/263 (10%) Query: 88 AVNSRISFESYFDQII--------RKSGDFDYRKITTKHIRSGVESRKHTP---SSAIQF 136 + N+ ++ + + I G ++TT +R+ + + + + Sbjct: 27 SENTITAYRADVLEFIVFLTSHHAEPQGLAPLARVTTPDMRAFLAHLRGQGVGSRTMARK 86 Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS-------EG 189 L++++ ++W E + PK + + RP ++ + G Sbjct: 87 LSAVKSFYRWLAELEGFEPTAVMMARAPKFQKKLPRPLAEDAAKAMIDTVEMQAADSWIG 146 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM-- 247 ++ L GLR S++ + L K G V + + L Sbjct: 147 ARDAAVVTLLYGCGLRISEALGLRGRDLPLGESLRIVGKGGKERIVPVLPIARRALDTYL 206 Query: 248 -----TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADA 300 P F +N +A + G+ +A H +R AT A Sbjct: 207 RLCPYDPEPDAPVFRGKRGGALNPRLIQKVTEAARLQLGLPATATPHAMRHSFATHLLAA 266 Query: 301 GATAHELMATYGWKTVDQAETYT 323 G + G ++ + YT Sbjct: 267 GGDLRAIQELLGHASLSTTQAYT 289 >gi|75812424|ref|YP_320043.1| Phage integrase [Anabaena variabilis ATCC 29413] gi|75705180|gb|ABA24854.1| Phage integrase [Anabaena variabilis ATCC 29413] Length = 343 Score = 98.6 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 54/311 (17%), Positives = 105/311 (33%), Gaps = 35/311 (11%) Query: 49 SALTGSTPKREYINSPRKKPTTLKWL-ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG 107 A + + PT ++W+ + E+ +S +LA NSR +E + + Sbjct: 21 QAPSTLQGQSRSRARKTSLPTDIRWIKVLEFLRS---TNLAPNSRKLYERELKRFLG-WT 76 Query: 108 DFDYRKITTKHI-------RSGVESRKHTP---SSAIQFLTSMRVLFKWA--VRQEYVAI 155 Y ++ +H+ R V++ P SS + +++ FKW + +A Sbjct: 77 QLHYHELRPRHLGLYKEYLRDEVKTDSGKPLSKSSINAGVAALKSFFKWMCYTYPDIIAT 136 Query: 156 NPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE--GSQPR-LAFEFLLYSGLRCSDSCRA 212 NP L ++ K + T E M++ S ++ R A +L GLR + + Sbjct: 137 NPTLGIKLEKVPLPPAQSLTDEQMERVWSALELLGETKQRDTALVHILSHGLRAGEIVQL 196 Query: 213 GVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKE----------TFFINND-- 260 V + + KT V L +L + I++ Sbjct: 197 NVGSFDGKLLFLPDTKTNEPRLVPLRKESRDVLEAYLRSRREQGEELNSLTPLMISHHAS 256 Query: 261 --KQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVD 317 +++ + AG+ + H R AT G G ++ Sbjct: 257 YKGDRLSYHGIYFAVEKIGELAGIEDLHPHQFRHTYATELLLLGVDPSHARKLTGHQSEK 316 Query: 318 QAETYTKGADR 328 YT +++ Sbjct: 317 AFRRYTLRSEQ 327 >gi|238919949|ref|YP_002933464.1| integrase [Edwardsiella ictaluri 93-146] gi|238869518|gb|ACR69229.1| integrase [Edwardsiella ictaluri 93-146] Length = 364 Score = 98.6 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 48/282 (17%), Positives = 98/282 (34%), Gaps = 31/282 (10%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RK 127 ++ ++EY + + +A N+ + S + G + ++TT+ I + Sbjct: 68 SVSQWMAEYLRILGYRGVAANTLRARRSQIKAVQTVIGQKNIAQVTTRDIALLLHHYVLI 127 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 S+A + + LF+ A+ + NP P + + R T+ +Q + Sbjct: 128 GHLSAAGLMRSFLNALFREAIAAGLIDYNPVTQTRTPPIRVKRRR-LTETMLQTVYAQAL 186 Query: 188 EGSQPRLAF----EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL------ 237 + + E L +G R D C Q ++ + + +KTG + + L Sbjct: 187 QLEPHKPWLPRSIELALLTGQRREDLCALRWQDIREDKLWVIQRKTGARLAMTLDLHLQL 246 Query: 238 ---PDGFMKLLAMTPIGKET-FFINNDKQKMNA--------TQFSIWFKAKATKAGV--- 282 P ++LA I + + +N+ + ++N + F K G+ Sbjct: 247 GDYPLRLREVLARCRIPGPSDYLLNSQRPRLNRRPGGSLVPDTLTKGFSRLMDKCGLVQE 306 Query: 283 --NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 S H +R ++ A G K E Y Sbjct: 307 ISPPSFHEIR-SLSSRMYQAQYGTEFCQRLLGHKNRHMTEKY 347 >gi|254450597|ref|ZP_05064034.1| site-specific recombinase, phage integrase family protein [Octadecabacter antarcticus 238] gi|198265003|gb|EDY89273.1| site-specific recombinase, phage integrase family protein [Octadecabacter antarcticus 238] Length = 358 Score = 98.6 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 47/322 (14%), Positives = 110/322 (34%), Gaps = 20/322 (6%) Query: 9 PFVTKERTRHGKIIYYFRK---GHGRRIRL-PYPHESTFIPAYMSALTGSTPKREYINSP 64 + + K +YF+K G +RI + +P S + R + Sbjct: 28 KGLVLFVGKRSKT-WYFQKDVGGQTKRILIGRFPIISAQAARQTALGFALEMGRGAGKAA 86 Query: 65 RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124 + TL+ + Y + +++ + ++ +I+ Sbjct: 87 QIGAPTLEAAMEVYLARPKLR--SETNKVGMRAQLTLHLKDWMRLPLDEISKAMTVRRHH 144 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 +PS+A L S R ++ A R + P +++E + K +G + ++ Sbjct: 145 DMAGSPSAANHVLRSFRAIYNHARRTGDLPECPTMAIEWFEDKPDGRIIENLKHWRKTID 204 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244 R+ +E LL++GLR ++ + + + + K G + + ++ Sbjct: 205 DLPNPIH-RVFYELLLFTGLRKTEVFTLKWEQILEDRIHLPMTKNGRSFDLPISQLHHEI 263 Query: 245 LAMT-PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGAT 303 LA P+ + F ++ + + + H R+ AT++ +AG Sbjct: 264 LAPLRPLSSDWVF------PSPKSETGHITRPVR----LKYNPHMHRRTFATVAMEAGVL 313 Query: 304 AHELMATYGWKTVDQA-ETYTK 324 + + + YT+ Sbjct: 314 EEIVGRLLNHTPLSITGQRYTR 335 >gi|26988264|ref|NP_743689.1| phage integrase, putative [Pseudomonas putida KT2440] gi|24983008|gb|AAN67153.1|AE016344_3 phage integrase, putative [Pseudomonas putida KT2440] Length = 368 Score = 98.6 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 58/356 (16%), Positives = 118/356 (33%), Gaps = 40/356 (11%) Query: 7 LPPFVTKERT-RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS-- 63 LPP + ++ R+G Y +R R+ ++ I +SA +++ Sbjct: 13 LPPNLYRKTDKRNGVTYYTYRDPVSDRMFGLGSDKAKAIAEAVSANMALQVAPPTLSARI 72 Query: 64 ---PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120 P I EY L+ +S + +++ + G+ R +TT I Sbjct: 73 APEPSAPDRKFSEWIVEYFADLKDRELSESSMRNLRMRLNRVEKAFGERGIRTLTTMDIA 132 Query: 121 SGVES--RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 + + ++ A + +R LF A+ + +V NP + + + K + R T E Sbjct: 133 DYLSTYVKEGKAQMARAMRSLLRDLFMGAMARGWVDYNPVEATKAARVKIKRQR-LTLEL 191 Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE-- 236 + ++ R A E L +G R D + + + KTG + + Sbjct: 192 WKAIYEEAAQPWLKR-AMELALITGQRREDIASFVFRDEVDGFLQVVQSKTGARLRISTS 250 Query: 237 -----LPDGFMKLLAM---------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282 + +++ T + S F A +A V Sbjct: 251 VTLECISLSLGEVIRRCRDRVLSKHLVHHHRTISRAKAGSPIMLDTISKEFAAARDRAAV 310 Query: 283 NK---------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY--TKGAD 327 + H R +A + + G + G ++ + Y ++GA+ Sbjct: 311 KLGLDLGASPPTFHEQRSLAARLHDEEG---RDAQRLLGHRSAKMTDLYRDSRGAE 363 >gi|28198888|ref|NP_779202.1| phage-related integrase [Xylella fastidiosa Temecula1] gi|182681588|ref|YP_001829748.1| integrase family protein [Xylella fastidiosa M23] gi|28056979|gb|AAO28851.1| phage-related integrase [Xylella fastidiosa Temecula1] gi|182631698|gb|ACB92474.1| integrase family protein [Xylella fastidiosa M23] gi|307580023|gb|ADN63992.1| integrase family protein [Xylella fastidiosa subsp. fastidiosa GB514] Length = 410 Score = 98.6 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 55/348 (15%), Positives = 121/348 (34%), Gaps = 34/348 (9%) Query: 19 GKIIYYFRK-----------GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKK 67 G I++ FR G + L A + A+ S +++ + Sbjct: 34 GGIVWRFRYRLAGRYEKLTLGKYPALSLRNARLKRDEAASLVAMGTSPARQKQLAKVTAA 93 Query: 68 PT-TLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVES 125 T++ + + ++ Y D+ I+ GD R++T + IRS + Sbjct: 94 DAMTVRDFAERFFREIQSRDRKDSTMP--RRYLDKDILPFVGDKPMREVTAEEIRSLIWR 151 Query: 126 RKHTP--SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER--PKRKTEGIRPWTKEDMQQ 181 +K ++A Q ++ L +AV + NP L++ + R + ++++ Sbjct: 152 KKEQGFDATAGQIRGVLKRLCDYAVTCGLMPTNPVLALPMRHVYKAVSRDRALSPDEIRL 211 Query: 182 F-KSFWSEGSQP--RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT----QKTGTIIT 234 F ++ W+ + +LA +L + +R S+ A H+ + KTG Sbjct: 212 FLRAVWASRIRRQFKLALHLILLTMVRKSELLLARWDHVHLDQAQWHIPAEHSKTGKPHI 271 Query: 235 VELPDG---FMKLLAMTPIGKETFFINNDK--QKMNATQFSIWFKAKATKAGVNK-SAHG 288 V L + L + G + + + G++ + H Sbjct: 272 VYLSRQAVVLFEALRVLAGGSALVMPGSGTLTRPFAHNALNHALGKAMQWQGIHAFTIHD 331 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKG--ADRIRLGIK 334 +R+ ++T + G + + Y + AD+ R ++ Sbjct: 332 LRRTASTWLHEHGWASDVVEKALNHSIGGVRGVYNRAEYADQRRQMLQ 379 >gi|327412982|emb|CAX68000.1| shufflon-specific DNA recombinase [Salmonella enterica subsp. VII] Length = 383 Score = 98.6 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 45/281 (16%), Positives = 89/281 (31%), Gaps = 25/281 (8%) Query: 61 INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120 R K +L + +Y +A R F +ITT I Sbjct: 2 ARPQRIKKMSLSKALDKYYATASVHKRGH--RQEFYRVNVIQRHPLARKAMDEITTVDIA 59 Query: 121 SGVESRKHTPSSAIQF----------LTSMRVLFKWA-VRQEYVAINPCLSVERPKRKTE 169 S + R ++ L + L+ A V NP V +PK Sbjct: 60 SYRDDRLAQMNTRTGRCISGNTVRLELALLSSLYNLASVEWGTCRTNPVEMVRKPKISGG 119 Query: 170 GIRPWTKEDMQQFKSFWSEGSQP--RLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIK 225 R T + ++ S + + P F + + +R + +H+ + + Sbjct: 120 RDRRLTSHE-ERCLSRYFQNQNPALHAIFHLAIETAMRQGEILSLRWEHIDLQHGVAHLP 178 Query: 226 TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG-VNK 284 K G+ V L +LL T + ++ F ++ + ++ Sbjct: 179 LTKNGSSRDVPLSRKARQLL-----QGMTVALTGSVFNYTSSGFKSAWRVALQRLSIIDL 233 Query: 285 SAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTK 324 H +R + + + G E+ A G ++++ + YT Sbjct: 234 HFHDLRHEAISRLFELGTLNVMEVAAISGHRSLNMLKRYTH 274 >gi|301310050|ref|ZP_07215989.1| tyrosine type site-specific recombinase [Bacteroides sp. 20_3] gi|325280034|ref|YP_004252576.1| integrase family protein [Odoribacter splanchnicus DSM 20712] gi|300831624|gb|EFK62255.1| tyrosine type site-specific recombinase [Bacteroides sp. 20_3] gi|324311843|gb|ADY32396.1| integrase family protein [Odoribacter splanchnicus DSM 20712] Length = 406 Score = 98.6 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 47/275 (17%), Positives = 99/275 (36%), Gaps = 26/275 (9%) Query: 90 NSRISFE---SYFDQIIRK---SGDFDYRKITTKHIRSGVESRKH----TPSSAIQFLTS 139 + +E Y ++ I+K D + I K +SAI L + Sbjct: 132 KTVQRYETTTRYLEEFIKKEYQLSDIALNNLEANFISKFDAFLKIEKGCAQNSAITRLKN 191 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQPRLAF 196 ++ + + A+ +++ +P + R K + T ++++ + Q R F Sbjct: 192 LKKIIRIALENDWIKKDP-FAYYRFKLEETDPEFLTMDEIKIILAKEFTIKRVEQVRDVF 250 Query: 197 EFLLYSGLRCSDSCRAGVQH-LQNN----IFSIKTQKTGTIITVELPDGFMKLLAMTPIG 251 F +++GL SD +H +++N QKT + + + +L Sbjct: 251 IFCIFTGLAFSDVKDLSPEHLVKDNKGELWIRKNRQKTKIMCNIPVLPVAASILDKYKDV 310 Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS-ADAGATAHELM 308 E + + + + K A G++K S H R AT G + + Sbjct: 311 AE--CTGKLLPVLCNQRMNSYLKEIADVCGIHKNLSTHTARHSYATSVCLANGVSMENVA 368 Query: 309 ATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343 G + Y + D+ L K+ ++++S + Sbjct: 369 KMLGHADTSVTKHYARVLDQNIL--KDMQKVNSCL 401 >gi|218260603|ref|ZP_03475830.1| hypothetical protein PRABACTJOHN_01493 [Parabacteroides johnsonii DSM 18315] gi|218224449|gb|EEC97099.1| hypothetical protein PRABACTJOHN_01493 [Parabacteroides johnsonii DSM 18315] Length = 406 Score = 98.6 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 46/275 (16%), Positives = 99/275 (36%), Gaps = 26/275 (9%) Query: 90 NSRISFE---SYFDQIIRK---SGDFDYRKITTKHIRSGVESRKH----TPSSAIQFLTS 139 + +E Y ++ I+K D + I K +SAI L + Sbjct: 132 KTVQRYETTTRYLEEFIKKEYQLPDIALNNLEANFISKFDAFLKIEKGCAQNSAITRLKN 191 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQPRLAF 196 ++ + + A+ +++ +P + R K + T ++++ + Q R F Sbjct: 192 LKKIIRIALENDWIKKDP-FAYYRFKLEETDPEFLTMDEIKIILAKEFTIKRVEQVRDVF 250 Query: 197 EFLLYSGLRCSDSCRAGVQH-LQNN----IFSIKTQKTGTIITVELPDGFMKLLAMTPIG 251 F +++GL SD +H +++N QKT + + + +L Sbjct: 251 VFCIFTGLAFSDVKDLSPEHLVKDNKGELWIRKNRQKTKIMCNIPVLPVAASILDKYKDV 310 Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS-ADAGATAHELM 308 E ++ + + + K A G++K S H R AT G + + Sbjct: 311 AE--CTGKLLPVLSNQRMNSYLKEIADVCGIHKNLSTHTARHSYATSICLANGVSIENVA 368 Query: 309 ATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343 G + Y + D+ K+ ++++S + Sbjct: 369 KMLGHADTSVTKHYARVLDQN--IFKDMQKVNSCL 401 >gi|317483230|ref|ZP_07942225.1| phage integrase [Bifidobacterium sp. 12_1_47BFAA] gi|316915299|gb|EFV36726.1| phage integrase [Bifidobacterium sp. 12_1_47BFAA] Length = 387 Score = 98.2 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 58/343 (16%), Positives = 103/343 (30%), Gaps = 37/343 (10%) Query: 11 VTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70 VT+ +T G+ Y RK + + + P Sbjct: 4 VTRYKTSKGENRY--RKPDSTQTDKRGFRRKIDAENWAAEHVTIAKATNSYVDPEDGKRR 61 Query: 71 LKWLISEYRKSAHWGSLAVNSRI-SFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RK 127 + L ++ K W +R+ + E++ + D IT +++ + Sbjct: 62 VGDLYEQWLKE-KWPFWKETTRVNATEAWRLYCEERWADRRIGTITRAEVQAWISDIIAS 120 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP--WTKEDMQQFKSF 185 S + +M + + AVR + + NPC +VE PK R T + F Sbjct: 121 AGAPSVRRPYQTMLGICRMAVRDKLILDNPCENVELPKLPRRKSRRVYLTISRLLAFADE 180 Query: 186 WSEGSQ---PRLAFEFLL-YSGLRCSDSCRAGVQHLQNNIFSIKTQ-------------- 227 S G R A L + GLR ++ + L + Sbjct: 181 CSRGKHLGAERRALVLTLGFCGLRWGEAAALKARDLDFGRGVLHVGGNLVYVGARWVEGT 240 Query: 228 -KTGTIITVELP---DGFMKLLAMTPIGKETFFINNDKQKMNATQFSI---WFKAKATKA 280 K V +P +K + E F + + + W+ Sbjct: 241 PKNSEERDVPMPLIVMEALKPMCGEREPDERVFRDLRGGPIMKQSAAKTTGWWYHALVCL 300 Query: 281 GVNK----SAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319 G K + H +R +A+++ AGA L G K Sbjct: 301 GWPKEEWPTPHDLRHTAASLAVHAGANVKALQRMLGHKNASMT 343 >gi|254818892|ref|ZP_05223893.1| site-specific tyrosine recombinase XerD [Mycobacterium intracellulare ATCC 13950] Length = 209 Score = 98.2 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 32/190 (16%), Positives = 57/190 (30%), Gaps = 22/190 (11%) Query: 156 NPCLSVERPKRKTEGIRPWTKEDMQQFKSFW--------SEGSQPRLAFEFLLYSGLRCS 207 + +V P + T + + + R E L +G R S Sbjct: 1 DVARAVRPPTPGRRLPKSLTVDQVLALLEGAGGDSPADGPLTLRNRALLELLYSTGARIS 60 Query: 208 DSCRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFMKLL-----------AMTPIGKETF 255 ++ V + + K G V + + L A G Sbjct: 61 EAVGLDVDDVDTQARSVLLRGKGGKQRLVPIGRPAVAALDAYLVRGRSDLARRGRGTPAI 120 Query: 256 FINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGW 313 F+N +++ + A +AG+ S H +R AT + GA + G Sbjct: 121 FLNVRGGRLSRQSAWQVLQDAAERAGITSGVSPHMLRHSFATHLLEGGADVRVVQELLGH 180 Query: 314 KTVDQAETYT 323 +V + YT Sbjct: 181 ASVTTTQIYT 190 >gi|169827113|ref|YP_001697271.1| tyrosine recombinase xerC [Lysinibacillus sphaericus C3-41] gi|168991601|gb|ACA39141.1| Tyrosine recombinase xerC [Lysinibacillus sphaericus C3-41] Length = 299 Score = 98.2 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 42/263 (15%), Positives = 89/263 (33%), Gaps = 23/263 (8%) Query: 85 GSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFLT 138 + +V++ +ES +++ G D + H R V K +S + ++ Sbjct: 20 KNFSVHTVREYESDLLDFLAFLQREGINDLASVEYIHARLYVTKLYDEKRARASISRKIS 79 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRL 194 S+R F++ RQ S+ PK+++ + +E++ Q + + Sbjct: 80 SIRSFFRFLNRQYGFDDGAFRSLYHPKKESRLPNFFYEEELMQLFDANTGDDLKSLRNMA 139 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------ELPDGFMKLL 245 E L +G+R S+ V+ + + I+ G + + D + Sbjct: 140 ILELLYATGIRVSELTSIQVKDVDFHYSIIRVMGKGRKERIIPFGQFASLAMLDYIEQAR 199 Query: 246 AMT--PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAG 301 + F+N ++ KA ++ H +R AT + G Sbjct: 200 PRLMKKTNHQQLFVNMRGGELTPRGVRHVLNEMIDKASLHTKIYPHMLRHTFATHLLNNG 259 Query: 302 ATAHELMATYGWKTVDQAETYTK 324 A + G + + YT Sbjct: 260 ADLRTVQELLGHSHLSSTQVYTH 282 >gi|160944688|ref|ZP_02091915.1| hypothetical protein FAEPRAM212_02202 [Faecalibacterium prausnitzii M21/2] gi|158443872|gb|EDP20876.1| hypothetical protein FAEPRAM212_02202 [Faecalibacterium prausnitzii M21/2] Length = 416 Score = 98.2 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 60/409 (14%), Positives = 115/409 (28%), Gaps = 101/409 (24%) Query: 10 FVTKERTRHGKII------------YYFRK--GHGRRIRLPYPHESTFIPAYMSALTGST 55 ++ + + G+++ Y +R +G+R + Y + L G Sbjct: 6 YMQRRKDNKGRVLKDGEVYRKSDGLYMYRWTAKNGKRHTI-----------YDATLEGLR 54 Query: 56 PKREYINSPRKKPT-------TLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSG 107 K E I TL L +RK+ L ++ ++ +++ + + G Sbjct: 55 EKEEKIQHDLADGIRIPECSLTLNDLFELWRKNK--VGLKEHTFANYVYMYNRFVRDEIG 112 Query: 108 DFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMR----VLFKWAVRQEYVAINPCLSV-- 161 + I IRS A+ L +++ +F AV EY+ +NP V Sbjct: 113 MMKLKDIRKSDIRSYYNGIVRNGKMALNTLETIQNVLHQVFAVAVDDEYIRVNPTDGVLT 172 Query: 162 ---ERPKRKTEGIRPWTKEDMQQFK---SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQ 215 + +T T Q F + F F+L +G R S++ Sbjct: 173 AIKAAHQYETPKRHALTLPQQQAFLNFIKKTPKFQHWLPMFTFMLGTGCRISETVGLCWS 232 Query: 216 HLQ--NNIFSIK------------------TQKTGT-IITVELPDGFMKLLAMTPIG--- 251 + + +I+ T KT + + K L Sbjct: 233 DIDFESGFITIQHNLVYHDHEVGGCYFTMSTPKTAAGKRAIPILPEVRKALEQERTNQQE 292 Query: 252 ------------KETFFINNDKQKMNATQFSIWFKAKATK-----------------AGV 282 + F+N Q N + K + Sbjct: 293 LELVCEYEIDGISDFVFLNRFGQPQNPQTVNRAIKRISVAHNEAELEKAEKEKREPQLLP 352 Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIR 330 S H +R T + + G + + E Y + + Sbjct: 353 PFSCHNLRHTFCTRLCENETNLKIIQDIMGHRDISTTMEIYAEATKEAK 401 >gi|331090315|ref|ZP_08339199.1| hypothetical protein HMPREF1025_02782 [Lachnospiraceae bacterium 3_1_46FAA] gi|330401450|gb|EGG81035.1| hypothetical protein HMPREF1025_02782 [Lachnospiraceae bacterium 3_1_46FAA] Length = 322 Score = 98.2 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 36/248 (14%), Positives = 84/248 (33%), Gaps = 14/248 (5%) Query: 88 AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS----SAIQFLTSMRVL 143 + + + + + K + R+ITT+ IR+ + + + ++ Sbjct: 61 SERTIQYYRVTVEHLFSKM-NQSVRRITTEEIRTYLSDYQKINRCSNVTIDNIRRNISSF 119 Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSG 203 F W ++Y+ +P + + K KT T E +++ + +E + + L +G Sbjct: 120 FSWLEEEDYILKSPMKRIHKIKTKTVVKSVITDEGIEKLRDNCAE-IRDLAIIDLLYSTG 178 Query: 204 LRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDG----FMKLLAMTPIGKETFFIN 258 +R + ++ + I K V + + E F+ Sbjct: 179 IRVGELVNLNIEDIDLEGRECIVYGKGDKERRVYFDAKAKVHLKEYIEKRKDNSEALFVT 238 Query: 259 NDKQK--MNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKT 315 D + + I + + +++ H R+ AT + D G ++ G Sbjct: 239 LDAPHDRLKISGVEIRLRQLGRQLKLDRIHPHKFRRTMATRAIDKGMPIEQVQKILGHSQ 298 Query: 316 VDQAETYT 323 +D Y Sbjct: 299 IDTTMQYA 306 >gi|313892498|ref|ZP_07826087.1| site-specific recombinase, phage integrase family [Dialister microaerophilus UPII 345-E] gi|313119077|gb|EFR42280.1| site-specific recombinase, phage integrase family [Dialister microaerophilus UPII 345-E] Length = 372 Score = 98.2 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 50/279 (17%), Positives = 106/279 (37%), Gaps = 32/279 (11%) Query: 83 HWGSLAVNSRIS-----FESYFDQ-IIRKSGDFDYRKITTKHIRS----GVESRKHTPSS 132 H+ L N+ ++++ ++ I D +I I + +K++P+S Sbjct: 81 HFLELKKNTIKESTFTYYKTHIEKDFIPILKDTPISRIDVNKINQLLNYMLNVKKNSPTS 140 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCL-SVERPK-RKTEGIRPWTKEDMQQFKSFWSEGS 190 T++ +FK A+ + + NP S++ K R + I P+TK+++ + + + Sbjct: 141 IKTKKTTLHAIFKQAIYESLITKNPVEFSIKLSKSRAKKEIIPFTKQEISSLLAASKDNN 200 Query: 191 ---QPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIK----------TQKTGTIITV 235 ++ +G+R + + N +IK T+ T + T+ Sbjct: 201 SLYTLYPIIRLVIETGMRRGEVLGLHWDDIDYTKNTITIKRSVSSFGVTSTKTTSSYRTL 260 Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSA 294 + +++L F+N ++ S FK + G+ N+ H +R +A Sbjct: 261 IVSKDTLEMLKKYKKHDTKVFVNAIYSYLSPNLLSKKFKILCDELGIVNQHFHNLRHTNA 320 Query: 295 TISADAGATAHELMATYGWKTVDQA-ETYTK---GADRI 329 T + G + G + TYT AD+ Sbjct: 321 TWLINQGVDIATVSRRLGHSNISTTLNTYTHFIPEADKK 359 >gi|257469562|ref|ZP_05633654.1| phage integrase family protein [Fusobacterium ulcerans ATCC 49185] gi|317063801|ref|ZP_07928286.1| conserved hypothetical protein [Fusobacterium ulcerans ATCC 49185] gi|313689477|gb|EFS26312.1| conserved hypothetical protein [Fusobacterium ulcerans ATCC 49185] Length = 355 Score = 98.2 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 57/290 (19%), Positives = 101/290 (34%), Gaps = 42/290 (14%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS-GDFDYRKITTKHIRSGVES--- 125 T + L Y + L ++ ++ + ++ I D IT +R+ + Sbjct: 57 TFQSLYDLYIEDMQ-PRLREHTLLTKKKIIEKKILPFFKDMTLESITAVRVRAWQNTLLN 115 Query: 126 ---RKHTPSSAIQFLTS---MRVLFKWAVRQEYVAINPCLSVERP-KRKTEGIRPWTKED 178 R + P S T + +F +AVR + NPC K++ E WT E+ Sbjct: 116 GVTRHNNPYSQTYIRTICNQLTAIFNYAVRFHSMRENPCHRAGTIGKKRAEEKNIWTPEE 175 Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT--------- 229 ++F + AF+ L ++GLR + ++ + +I K+ Sbjct: 176 FEKFVALIEHKIPSYTAFQILFWTGLRIGELLALSIKDIDFENKAIVVNKSYQRLGSRDV 235 Query: 230 -------GTIITVELPDGFMKLLAM------TPIGKETFFINNDKQKMNATQFSIWFKAK 276 TV++ D ++++ P + F F K Sbjct: 236 ITAPKTEKGKRTVDISDELLEIIEKYLKRLYKPKKTDRLF------PYTKHTFENDMKEY 289 Query: 277 ATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324 A KAGV K H +R A+ + G + G + V ETYT Sbjct: 290 AVKAGVKKIRLHDLRHSHASFLFNNGIDIITIALRLGHEEVQTTLETYTH 339 >gi|330898878|gb|EGH30297.1| site-specific recombinase, phage integrase family protein [Pseudomonas syringae pv. japonica str. M301072PT] Length = 349 Score = 98.2 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 50/289 (17%), Positives = 102/289 (35%), Gaps = 26/289 (8%) Query: 60 YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119 YI + TL+ + Y S + ++ S ++I G + ++ + I Sbjct: 50 YIQRSGSERMTLEAALKRYL-SDITPTKKPTTQRGETSKAKKLIEHLGKYSLAALSAEII 108 Query: 120 RSGVESR---KHTPSSAIQ-----FLTSMRVLFKWAVRQEY---VAINPCLSVERPKRKT 168 + R K +A L + LF A+ QE+ + NP L++ +P Sbjct: 109 AGYRDKRLNEKGRAGTASNNTVRLELALLSHLFTVAI-QEWGLGLTFNPVLNIRKPSPGE 167 Query: 169 EGIRPWTKEDMQQFKSFWSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSI 224 R + ++ ++ + + S P L L +G+R ++ L+ I + Sbjct: 168 GRNRRLSADEERRLMAAVNRHSNPMLGWIVGIALETGMRSAEINTLRKPMVDLERRIVKL 227 Query: 225 KTQKTGTIITVELPDGFMKLLAMT------PIGKETFFINNDKQ--KMNATQFSIWFKAK 276 K TV L +L P + F + F+ + + Sbjct: 228 VDTKNDGQRTVPLSKRATELFKAAMANPARPGDCQLVFFGEPGKDKNRRPYAFTKIWGSL 287 Query: 277 ATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 + G+ + H +R + + + G + E+ A G K++ + YT Sbjct: 288 VKELGLSDFRFHDLRHEAVSRLVEGGLSDQEVSAISGHKSMQMLKRYTH 336 >gi|239946786|ref|ZP_04698539.1| tyrosine recombinase XerC [Rickettsia endosymbiont of Ixodes scapularis] gi|239921062|gb|EER21086.1| tyrosine recombinase XerC [Rickettsia endosymbiont of Ixodes scapularis] Length = 305 Score = 98.2 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 46/283 (16%), Positives = 105/283 (37%), Gaps = 28/283 (9%) Query: 70 TLKWLISEYRKSAHWG-SLAVNSRISFESYFDQIIR-----KSGDFDYRKITTKHIRSGV 123 +++ LI++++K + + ++ IS+ + + S I T IR Sbjct: 5 SIQELINKWQKYLVLQRNCSNHTVISYNNDLKHFLEFMNYYNSELVTINHIKTADIRLIR 64 Query: 124 ESRKH------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177 T SS + L++++ +++ + + + S++ PK+ + +++ Sbjct: 65 SWLAKRNCNNFTTSSISRGLSAVKNFYRFLEKTTQLNSHIIFSIKSPKKTKLLPKALSED 124 Query: 178 D-------MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230 D ++++ + + + + SGLR S++ HLQN F K Sbjct: 125 DVVISLEHIEEYGNVKWVELRNKALLVLIYASGLRISEALSITKLHLQNLEFIRIIGKGS 184 Query: 231 TIITVELPD-------GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV- 282 + ++++L E F +K+ F+ G+ Sbjct: 185 KERIIPWLPITKNLITKYLEILPYKLGDNEPIFRGKQGKKLQPPVFNRELIKLKHFYGLP 244 Query: 283 -NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 + +AH R A+ + GA + G K++ + YTK Sbjct: 245 QHLTAHSFRHSFASHLLEHGADLRSIQELLGHKSLSTTQNYTK 287 >gi|254465304|ref|ZP_05078715.1| phage integrase [Rhodobacterales bacterium Y4I] gi|206686212|gb|EDZ46694.1| phage integrase [Rhodobacterales bacterium Y4I] Length = 292 Score = 98.2 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 42/265 (15%), Positives = 84/265 (31%), Gaps = 16/265 (6%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK--ITTKHIRSGVESRKHTPS 131 L + + L + S + + + R TP Sbjct: 9 LRARMIEDMRIKGLGDKCQKSHIRAIKDFAAFLRRSPDTATPDDLRAYQLHMTDRGVTPP 68 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS-EGS 190 + + ++R F+ + + ++ + + ++ E++ G Sbjct: 69 TYNARIIALRFFFETTCGRGEMKR----HMQFRTQPRKLPVVFSAEEVAALLQVAPGPGL 124 Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTIITVELPDGFMKLLA-- 246 + R A +GLR S+ C V + ++ ++ K V L G + LL Sbjct: 125 KYRAALSISYGAGLRASEVCNLKVSDIDSDRMLIHVEQGKGRKDRKVMLSPGLLNLLREY 184 Query: 247 -MTPIGKETFFINNDK-QKMNATQFSIWFKAKATKAGVNK---SAHGVRKFSATISADAG 301 + F K +++ Q F + AG+ K + H +R AT +AG Sbjct: 185 WREARPEGWLFPGKPKINPVSSRQLHRAFSSAKLIAGIKKPGSTLHTLRHSFATHLLEAG 244 Query: 302 ATAHELMATYGWKTVDQAETYTKGA 326 + G ++ E YT A Sbjct: 245 TDVRVIQVLLGHAKLETTERYTHVA 269 >gi|300215222|gb|ADJ79638.1| Phage integrase [Lactobacillus salivarius CECT 5713] Length = 381 Score = 98.2 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 56/307 (18%), Positives = 99/307 (32%), Gaps = 57/307 (18%) Query: 67 KPTTLKWLISEYRK---------SAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK 117 K ++ E+ + + L N + D KIT + Sbjct: 66 KSGKFGDVLDEWLALHKETVKASTWQFIELRAN---------KHVRPYFKDMYVDKITLR 116 Query: 118 HIRSGVES-RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR---- 172 + V K P + + ++ ++ +A+R + NP L V +PK++ Sbjct: 117 QCQDFVNKTFKVAPVAYVYSVSIVKNTLDYALRLGMIESNPMLYVIKPKKQANISDNHGN 176 Query: 173 PWTKEDMQQFKSFWS-EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ------------- 218 + K+++++F + F L YSG+R + L Sbjct: 177 YYNKDELKKFLDVAKNTNLKKYALFRLLAYSGMRIGECLALTWHDLDYKNNTIAINKTLA 236 Query: 219 --NNIFSIKTQKTGTIITVELPD----------GFMKLLAMTPIG------KETFFINND 260 NN I+T KT V D + + +G K+ F N Sbjct: 237 RTNNGIKIQTPKTKASNRVISLDNETIQVLKMWQLEQRKQLLKVGINAMDSKQLIFSNGK 296 Query: 261 KQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319 + + K A KAG++ + HG R AT+ +G ++ A G V Sbjct: 297 NSFIIVPTVRLAIKQIAKKAGIHSITTHGFRHTHATLLFASGLDIKQVQARLGHSNVQTT 356 Query: 320 -ETYTKG 325 YT Sbjct: 357 LNIYTHA 363 >gi|253571485|ref|ZP_04848891.1| integrase [Bacteroides sp. 1_1_6] gi|251838693|gb|EES66778.1| integrase [Bacteroides sp. 1_1_6] Length = 420 Score = 98.2 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 37/228 (16%), Positives = 80/228 (35%), Gaps = 10/228 (4%) Query: 110 DYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169 D + + G + + ++A + + ++ K A EY+ ++ V+ + Sbjct: 182 DIKMFLLRAPMGGNKKGTISQNTASTYFSILKAGLKQAFIDEYLTVDISAKVKGITNIEK 241 Query: 170 GIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSI- 224 T ++Q + + AF F + +GLR SD + + + ++ Sbjct: 242 PRVALTMNEVQMLVDTPCKDDVLKRAFLFSILTGLRHSDIQTLKWKQIQQTSKGTWQAVV 301 Query: 225 KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284 QKT + ++L + P E A+ S K +G+ K Sbjct: 302 IQQKTKRPDYKPVTQQALQLCGIRPDDDEALVFEGLTD---ASWISRPLKVWIEASGIKK 358 Query: 285 --SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 + H R A++ + G + + + G V + YT + + Sbjct: 359 HITFHCGRHSYASLLLENGVDIYTIKSLMGHTNVKTTQIYTHIVNEQK 406 >gi|237740351|ref|ZP_04570832.1| conserved hypothetical protein [Fusobacterium sp. 2_1_31] gi|294782552|ref|ZP_06747878.1| integrase/recombinase, phage integrase family [Fusobacterium sp. 1_1_41FAA] gi|229422368|gb|EEO37415.1| conserved hypothetical protein [Fusobacterium sp. 2_1_31] gi|294481193|gb|EFG28968.1| integrase/recombinase, phage integrase family [Fusobacterium sp. 1_1_41FAA] Length = 329 Score = 98.2 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 37/277 (13%), Positives = 94/277 (33%), Gaps = 15/277 (5%) Query: 59 EYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH 118 + + R + +++L + + H + S +++ + + +K D + ITT Sbjct: 40 KKEGADRDEKQNIEYL-EAFLSAKHVEGCSRKSLKYYKATIENLFKKI-DKSIKHITTND 97 Query: 119 IRSGVESRKHTPSS----AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174 +R +++ + ++ F W ++Y+ +P + + K T + Sbjct: 98 LREYLDNYQKEGNASKITIDNIRRIFSSFFAWLEEEDYILKSPVRRIHKVKTGTVVKETY 157 Query: 175 TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTII 233 + E M+ + + + L +G+R + + ++ + + K Sbjct: 158 SDEAMEIMRDNCKS-LRDLAIIDILASTGMRVGELVKLNIEDIDFEGRECVVFGKGDKER 216 Query: 234 TVELPDG----FMKLLAMTPIGKETFFIN--NDKQKMNATQFSIWFKAKATKAGVNK-SA 286 V L F++ +++ + I + K + K Sbjct: 217 KVYFDARTKIHLHNYLKTRDDDNSALFVSLLKPHKRLQISGVEIMLRELGKKLNITKVHP 276 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 H R+ AT + D G ++ G + +D Y Sbjct: 277 HKFRRTLATKAIDKGMPIEQVQQLLGHQKIDTTLQYA 313 >gi|60680662|ref|YP_210806.1| putative bacteriophage integrase [Bacteroides fragilis NCTC 9343] gi|60492096|emb|CAH06859.1| putative bacteriophage integrase [Bacteroides fragilis NCTC 9343] Length = 371 Score = 98.2 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 45/290 (15%), Positives = 96/290 (33%), Gaps = 35/290 (12%) Query: 76 SEYRKSAHWGSLAVNSRISFESYFDQIIRK--------SGDFDYRKITTK---------- 117 +Y+ A + R + + G + +I Sbjct: 87 DKYKLKADFLEY---YRKQLRKHDQKWEFVYLHFNNFVHGKCTFEEIDIDLCNKFREYLL 143 Query: 118 HIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177 + + + T +SA + ++ R K R + N +E+ + + + E Sbjct: 144 SAKKLRRNGRITRNSASGYWSTFRGFLKILYRNGMIKTNVNDFLEKIETEDVMKEALSVE 203 Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL-----QNNIFSIKTQKTGTI 232 ++ + + + A F + LR SD + + I TQK Sbjct: 204 ELYKLAETPCKKPILKTASLFSCMTSLRISDILSLCWEDIVDYSAGGKCVHIITQKNKAE 263 Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290 + + + + L+ + K F + + + I K AG+ K + H R Sbjct: 264 DIIPISEEALGLIGYSSEKKGLVF-----KGLMRSWTQIPMKEWIRSAGITKNITFHSYR 318 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340 + AT+ A AG + + K++ + Y K D + + S++I+ Sbjct: 319 RTFATLQAAAGTDIRTIQSIMAHKSITTTQRYIKVVDANKR--EASKKIT 366 >gi|324325058|gb|ADY20318.1| Tyrosine recombinase xerC [Bacillus thuringiensis serovar finitimus YBT-020] Length = 385 Score = 98.2 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 46/354 (12%), Positives = 101/354 (28%), Gaps = 48/354 (13%) Query: 13 KERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72 R R+ K Y R + + A + + + T Sbjct: 3 SFRKRNDKWEYRIRYKEMGKYKETSRGGFKTKKEAQLAAAKVEERIANGGNIQDNKVTFN 62 Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131 + E+ + G+++ + +E I+ G+ +++T + + + S Sbjct: 63 EYMYEWLNTFKKGNVSPRTYTVYEKNIRLHILPAFGELKLKELTRIKYQKFINNLLEKYS 122 Query: 132 SAIQFLTSMRVLFKWAVR-----QEYVAINPCLSVE----RPKRKTEGIRPWTKEDMQQF 182 + + ++ V A+ + NP ++ K + I+ + +++QQF Sbjct: 123 K--KTVETINVTMHHALDTAVNELGILEKNPTTKIKLRTNHINPKQDEIKCYDIDELQQF 180 Query: 183 KSF---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ------------------NNI 221 ++ G + F FL +GLR + + + I Sbjct: 181 LNYILKEKGGFKYYSLFMFLSRTGLRIGECLALQWEDIDFEEQKLFVNKTLLSTKRNEGI 240 Query: 222 FSIKTQKTGTIITVELPDGFMKLLAMTP--------------IGKETFFINNDKQKMNAT 267 + + T+ + M L F + D M Sbjct: 241 IFGPPKNKSSKRTISIDPSTMSHLKKMKLEQNKQILKNGKYYKDHNFIFTHEDNSCMLHP 300 Query: 268 QFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320 + + K + HG R A +GA + G ++D Sbjct: 301 STLKFLQQACKKGNFKYITLHGFRHTHAVHLLQSGANLKYVSERLGHSSIDMTA 354 >gi|209551233|ref|YP_002283150.1| site-specific tyrosine recombinase XerC [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209536989|gb|ACI56924.1| tyrosine recombinase XerC [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 311 Score = 98.2 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 49/278 (17%), Positives = 90/278 (32%), Gaps = 29/278 (10%) Query: 82 AHWGSLAVNSRISFESYFDQIIRKS-GDF-------DYRKITTKHIRSGVESRKHTPSSA 133 A L+ ++ ++E Q + G D R++ R+ + +R+ S A Sbjct: 24 ARERRLSEHTLDAYERDTRQFLTFLTGHLAGPATLGDIRELRPADFRAFLAARRKQGSGA 83 Query: 134 IQF---LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM-------QQFK 183 L +R L ++ ++ V ++ PK+ +P + Q Sbjct: 84 RSLGRNLAGLRSLLRYLEKKGLVNAAGAGAIRSPKQPKSLPKPLSDTQAITVVSNEAQLH 143 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELP---- 238 ++ L GLR S++ L+ +++ T K V L Sbjct: 144 DEPWIAARDAAVMTLLYGCGLRISEALDLIPSDLKKGATTLRITGKGNKTRLVPLLSVVF 203 Query: 239 DGFMKLLAMTPIG---KETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFS 293 D K + P E F K+ A + + G+ + H +R Sbjct: 204 DAVEKYRTLCPYDLEPGEPLFRGARGGKLQAAIIQRAMQKLRSAFGLPETATPHALRHSF 263 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 AT G + G ++ + YT G D RL Sbjct: 264 ATHLLAGGGDLRTIQELLGHASLSTTQVYT-GVDASRL 300 >gi|86359460|ref|YP_471352.1| site-specific tyrosine recombinase XerC [Rhizobium etli CFN 42] gi|86283562|gb|ABC92625.1| tyrosine site-specific integrase/recombinase protein [Rhizobium etli CFN 42] Length = 311 Score = 98.2 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 50/278 (17%), Positives = 89/278 (32%), Gaps = 29/278 (10%) Query: 82 AHWGSLAVNSRISFESYFDQIIRKS-GDF-------DYRKITTKHIRSGVESRKHTPSSA 133 A L+ ++ ++E Q + G D R++ +R+ + +R+ S A Sbjct: 24 ARERRLSEHTLDAYERDTRQFLTFLTGHLAGPATLGDIRELRPADLRAFLAARRRQGSGA 83 Query: 134 IQF---LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK-------EDMQQFK 183 L +R L + ++ V ++ PK+ +P + D Q Sbjct: 84 RSLGRNLAGLRSLLRHLEKKGLVNAAGAGAIRSPKQPKSLPKPLSDTQAITIVSDEAQLH 143 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPD--- 239 ++ L GLR S++ L +++ T K V L Sbjct: 144 DEPWIAARDAAVMTLLYGCGLRISEALNLVPADLPKGATTLRITGKGNKTRLVPLLPVVF 203 Query: 240 -GFMKLLAMTPIG---KETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFS 293 K A+ P E F K+ A + G+ + H +R Sbjct: 204 DAVEKYRALCPYDLESGEPLFRGARGGKLQAAIIQRAMQKLRGALGLPETATPHALRHSF 263 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 AT G + G ++ + YT G D RL Sbjct: 264 ATHLLAGGGDLRTIQELLGHASLSTTQVYT-GVDASRL 300 >gi|323175399|gb|EFZ60994.1| site-specific recombinase, phage integrase family [Escherichia coli 1180] Length = 310 Score = 98.2 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 39/220 (17%), Positives = 68/220 (30%), Gaps = 26/220 (11%) Query: 7 LPPFVTKERTRHGKIIYYFRKGHGR-----RIRLPYPHESTFIPAYMSALTGSTPKREYI 61 LPP V Y K G R+ + Y E Sbjct: 86 LPPRVRS------NGYSYVWKPEGSTRTIGLGRVRKTSVAKVWQNY-----------ELE 128 Query: 62 NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121 + T+ L + S + LA ++ + + ++ G + T+ +R Sbjct: 129 KAKLHNIMTVAKLWHMFMDSPAFTELAPRTQKDYRQHQKALLMVFGKVLADNVKTEQVRI 188 Query: 122 GVESRK-HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 ++ R + + A L S+ ++ W + YV NPC V + K + T E Sbjct: 189 FMDKRGLESKTQANHELASLSRVYGWGYERGYVKNNPCKGVRKFSLKARTVYI-TDEQYA 247 Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN 220 + Q R+A E R D Q + + Sbjct: 248 AIYA--EAIPQLRIAMEISYLCAARLGDVLELKWQDIMDK 285 >gi|167772803|ref|ZP_02444856.1| hypothetical protein ANACOL_04185 [Anaerotruncus colihominis DSM 17241] gi|167665281|gb|EDS09411.1| hypothetical protein ANACOL_04185 [Anaerotruncus colihominis DSM 17241] Length = 526 Score = 98.2 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 39/291 (13%), Positives = 88/291 (30%), Gaps = 38/291 (13%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFE-SYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129 + + ++ + ++ ++E + II + G ++ K ++ K Sbjct: 72 FGEWLDFWYQNYVKPQIRPTTQANYEAKIYQHIIPELGKIPLNQLAQKDLQQFYARMKTA 131 Query: 130 PSSAIQ--------------FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175 + R + AV++ + NP + + P ++ ++ Sbjct: 132 GRLIRTEQFGKGLSDSMVRGLHAACRSALEKAVQEGLIRTNPAVGCKLPPKRGREMQVLG 191 Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT----GT 231 +E++Q+F L F L +GLR + L ++ K Sbjct: 192 REELQRFLIQAQAEGYFEL-FLLDLCTGLRRGELLALQWDDLDFRTGALTVNKQVYEVKG 250 Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQ----------------KMNATQFSIWFKA 275 + V +P + + + ++ M + Sbjct: 251 RLQVSVPKTRASIRRLVLPPGVVEVLRAYRETVDSRWMFPSPVKEDVPMTPGAVRRRLQI 310 Query: 276 KATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324 +AG + H +R AT+S + G L A G + + YT Sbjct: 311 ILERAGCKRIRFHDLRHTFATLSLENGMDVKTLSAMLGHVSAATTLDIYTH 361 >gi|269138944|ref|YP_003295645.1| putative phage integrase protein [Edwardsiella tarda EIB202] gi|267984605|gb|ACY84434.1| putative phage integrase protein [Edwardsiella tarda EIB202] Length = 364 Score = 98.2 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 47/282 (16%), Positives = 93/282 (32%), Gaps = 31/282 (10%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RK 127 ++ ++EY + + +A N+ + S + G + ++TT+ I S + Sbjct: 68 SVSQWMAEYLRILGYRGVAANTLRARRSQIKAVQTVIGQKNIAQVTTRDIASLLHHYVLI 127 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 S+A + + LF+ A+ + NP P + + R T+ +Q + Sbjct: 128 GHLSAAGLMRSFLNALFREAIAAGLIDYNPVTQTRTPPIRVKRRR-LTETMLQTVYAQAL 186 Query: 188 EGSQPRLAF----EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL------ 237 + + E L +G R D C Q ++ + + +KTG + + L Sbjct: 187 QLESYKPWLPRSIELALLTGQRREDLCALRWQDIREDKLWVIQRKTGARLAMTLDLHLQL 246 Query: 238 ---PDGFMKLLA--MTPIGKETFFINND-------KQKMNATQFSIWFKAKATKAGV--- 282 P ++LA P + + + + F K G+ Sbjct: 247 GDYPLRLREVLARCRLPGPSDYLLNSQRSRLNRRPGGALVPDTLTKGFSRLMDKCGLVQE 306 Query: 283 --NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 S H +R ++ A G K E Y Sbjct: 307 IYPPSFHEIR-SLSSRMYQAQYGTEFCQRLLGHKNRHMTEKY 347 >gi|154505016|ref|ZP_02041754.1| hypothetical protein RUMGNA_02526 [Ruminococcus gnavus ATCC 29149] gi|153794686|gb|EDN77106.1| hypothetical protein RUMGNA_02526 [Ruminococcus gnavus ATCC 29149] Length = 288 Score = 98.2 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 34/274 (12%), Positives = 97/274 (35%), Gaps = 18/274 (6%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH---TP 130 + + ++ +L S +++Y + K + + +++T + +R + ++K Sbjct: 10 YLEQLEEAGKIRNLKDRSISCYKNYVSYFL-KYQNKNPKELTCQDVRVFLLAKKEEGLKA 68 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 ++ + +++R ++ + + ++V R + + T ++ + + Sbjct: 69 TTLNLYNSAIRFFYRNVLHILWDD----ITVPRMILEHKLPTVLTASEIDRLLDAVDD-I 123 Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE------LPDGFMKL 244 + + F + SG+R S+ + + I + T + D + Sbjct: 124 KYKAMFAVMYSSGMRVSEVIHLHYDDISRSKMQINVRDTKNRMDRYTILSKRCLDILTQY 183 Query: 245 LAMTPIGKETFFINND-KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAG 301 + F N + + + + K + H +R AT + G Sbjct: 184 WFEKGRPRGILFPNKFTGNYLTVSTLEQVMRRAVADTELPKAATPHCLRHSFATHLMEQG 243 Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335 H + A G + E Y +++ +GI++ Sbjct: 244 IERHNIQALLGHRDPKSTEVYLHVSNKSLMGIQS 277 >gi|94968162|ref|YP_590210.1| phage integrase [Candidatus Koribacter versatilis Ellin345] gi|94550212|gb|ABF40136.1| phage integrase [Candidatus Koribacter versatilis Ellin345] Length = 454 Score = 98.2 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 44/270 (16%), Positives = 91/270 (33%), Gaps = 19/270 (7%) Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVE 124 K T+ L + ++A ++ N+ ++ I+ G + IT + +++ + Sbjct: 150 KTAMTVSELHRRW-ENAELPTIKRNTAGYYQKILRCHILPTFGQREIGSITREDVQTFLA 208 Query: 125 SR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR--PWTKEDMQ 180 S+ K++ ++ S+ + WAV ++ NPC V P + I+ E + Sbjct: 209 SQAGKYSRNTLRGMRVSLGRILTWAVNCAWLEKNPCSKVPLPHVEKGEIQRSILMTEQVT 268 Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT---------QKT-G 230 E R L +GLR ++ +I + KT Sbjct: 269 AIADKLEE--PYRTLVLLLAVTGLRIGEAIGIKWSDFDGDILHVSRTIYDGKADSTKTAS 326 Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS-AHGV 289 + + +P + + M G+ F + + A G+ + H Sbjct: 327 SNRKLPIPAALISRMRMLGDGEFIFHSRAGSPVNPGNALKRYLRPAAKALGIRLTGWHDF 386 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQA 319 R AT +G++ + G V Sbjct: 387 RHTQATQLLRSGSSPKVVSGILGHSDVGIT 416 >gi|154251910|ref|YP_001412734.1| integrase family protein [Parvibaculum lavamentivorans DS-1] gi|154155860|gb|ABS63077.1| integrase family protein [Parvibaculum lavamentivorans DS-1] Length = 326 Score = 98.2 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 46/307 (14%), Positives = 92/307 (29%), Gaps = 29/307 (9%) Query: 53 GSTPKREYINSPRKKPTTLKWLISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGD--- 108 G P + + I + ++ + I++ + D Sbjct: 10 GGAPAPDDAARTIPASGDARTEIRNWYSHLMGERRMSEATLINYHRDLTRFFEFLVDHLG 69 Query: 109 -----FDYRKITTKHIRSGVESRKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160 D ++ + R+ V R+ S + L+S+R F++ R ++ + Sbjct: 70 GPATLKDLGRLELRDFRAFVSQRRKDGLQSRSLARMLSSVRSFFRFLDRTHVLSNASATA 129 Query: 161 VERPKRKTEGIRPWTK-------EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAG 213 + PK +P T ++ + G++ L GLR S++ Sbjct: 130 LRSPKLPHAIPKPLTAAGARELLDEAEIAHEEPWIGARDIAVLTLLYGCGLRVSEALGLN 189 Query: 214 VQHLQNNIFSIKTQKTGTIITVELPDGFM----KLLAMTPIG---KETFFINNDKQKMNA 266 T K G V + L + P G + F+ + ++ Sbjct: 190 RSEAPLKDVLRITGKGGKERVVPVLPAARMAVDDYLRLCPHGLAKDDPLFVGSRGARLGQ 249 Query: 267 TQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 Q + G+ + H +R AT G + G ++ + YT Sbjct: 250 RQVRETMTRLRRRLGLPESATPHALRHSFATHLLAGGGDLRSIQELLGHASLSTTQMYT- 308 Query: 325 GADRIRL 331 D RL Sbjct: 309 EVDAARL 315 >gi|229136719|ref|ZP_04265374.1| Prophage LambdaBa04, site-specific recombinase, phage integrase [Bacillus cereus BDRD-ST196] gi|228646739|gb|EEL02919.1| Prophage LambdaBa04, site-specific recombinase, phage integrase [Bacillus cereus BDRD-ST196] Length = 378 Score = 98.2 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 43/307 (14%), Positives = 101/307 (32%), Gaps = 46/307 (14%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134 I+ Y K L + S++ + + + + ++ + + + Sbjct: 82 ITSYEKDMSLVRLYILPPFSYKKI----------KSIKPVMIQSYYAELKEKGLSNGTIS 131 Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-GSQPR 193 +R +FK AV E + N V++P+ + ++ W+ E+ +F + E + Sbjct: 132 NIHRCLRCIFKHAVEWEIIHDNIMNKVKKPREEQGEMKTWSSEECNRFLQYLKEKNIKYH 191 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKE 253 + F +Y+G+R + + + + I K+ L K + Sbjct: 192 MFFLLAIYTGMRRGELLALTWKDIDFDNKRILVNKSLVKTEKGLFKAATKTKSSNRSISI 251 Query: 254 TFFINNDKQKMNATQFSIWFK-------------------------------AKATKAGV 282 + F+ Q + + +F+ KAGV Sbjct: 252 SSFVIGKLQSYYSYKKKEFFRWGIHLNEEAYIFTGNTIHSPLHIDAPHRFLNDHYKKAGV 311 Query: 283 NK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRIS 340 + H +R AT+ AG + G ++ + Y+ + + + Sbjct: 312 PRIRIHDLRHTHATLMLQAGEHPKIVQDRLGHSSIQMTLDKYSHITQ--NMQQQAAENFE 369 Query: 341 SVVDSDD 347 S++ S++ Sbjct: 370 SIIKSNE 376 >gi|299536245|ref|ZP_07049558.1| prophage Lp3 protein 1, integrase [Lysinibacillus fusiformis ZC1] gi|298728231|gb|EFI68793.1| prophage Lp3 protein 1, integrase [Lysinibacillus fusiformis ZC1] Length = 388 Score = 98.2 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 52/305 (17%), Positives = 103/305 (33%), Gaps = 52/305 (17%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132 I++Y K+ ++ + YF + I+ G + KIT + Sbjct: 81 WITQYEKTVE-----ESTFVKTVGYFKNHILPSMGSYRIEKITIAICQKHYNEWASKVKK 135 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS-- 190 A + + + +A+ ++ NP VE + + T+++ + F + S Sbjct: 136 ARTIKSYAKKVLDFAIVHGFIQTNPFTHVET--KVKKAFTESTEDENENFYTKEELISFL 193 Query: 191 ---------QPRLAFEFLLYSGLRCSDSCRAGVQHL----------------QNNIFSIK 225 + F + Y+G+R S++ + + +K Sbjct: 194 EKAKDHLNYKAYTLFRLIAYTGMRKSEALALTWNDVNFVENEITINKAIGRGKQTQLYLK 253 Query: 226 TQKTGTIITVELPDGFMKLLA---------------MTPIGKETFFINNDKQKMNATQFS 270 T KTG T++L + + +L T + F N + Q Sbjct: 254 TTKTGKPRTIKLDETTLSILKEWNKLQKQQYIQLGINTLKKNQLMFSNTKNDFIQPGQVQ 313 Query: 271 IWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADR 328 W + K + K S HG+R ++ +AGA+ E+ G V + YT + Sbjct: 314 KWMYSVQNKYTLKKVSPHGLRHTHCSLLFEAGASIKEVQDRLGHSDVKTTLDIYTHVTKK 373 Query: 329 IRLGI 333 + G Sbjct: 374 AKEGA 378 >gi|170781199|ref|YP_001709531.1| tyrosine recombinase XerC [Clavibacter michiganensis subsp. sepedonicus] gi|169155767|emb|CAQ00888.1| tyrosine recombinase XerC [Clavibacter michiganensis subsp. sepedonicus] Length = 315 Score = 98.2 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 48/310 (15%), Positives = 101/310 (32%), Gaps = 35/310 (11%) Query: 58 REYINSPRKKPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRK 113 + +P P L+ ISE+ S A ++ ++ + + + G Sbjct: 6 QPQRGAPAATP--LEADISEFATSMDRERGSAAHTVRAYSADLRDLAAHAARQGVTTSAG 63 Query: 114 ITTKHIRSGV---ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170 + +R + + P++ + ++R W +R V +P + ++ P+ + Sbjct: 64 LDLDVLRDWLWRGSQARLAPATLARRSAAVRGFGAWLLRTGRVDADPAVRLKAPRAGSHL 123 Query: 171 IRPWTKEDM--------QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222 R +E M Q + A E L S LR S+ + + + Sbjct: 124 PRVLAREQMSALLADLAAQAADDDPAALRDLAAIELLYASALRVSELTGLDLGDVDASRL 183 Query: 223 SIKTQKTGTI-ITVELPDGFMKLLAM----------TPIGKETFFINNDKQKMNATQFSI 271 +++ G V + L TP F+ ++ + Sbjct: 184 TVRVVGKGDRERVVPFGVPAAEALDAYVTRGRPALVTPRTGTALFLGARGGRLGSRAVYG 243 Query: 272 WFKAKATKAGVNKS----AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GA 326 + A + S H +R +AT D GA + G ++ + YT Sbjct: 244 LV--ASLLADIPGSGPQGPHALRHTAATHLLDGGADLRTVQEMLGHASLGTTQIYTHVSI 301 Query: 327 DRIRLGIKNS 336 +R+R + + Sbjct: 302 ERLRRSYEGA 311 >gi|15838723|ref|NP_299411.1| hypothetical protein XF2132 [Xylella fastidiosa 9a5c] gi|9107262|gb|AAF84931.1|AE004027_13 phage-related protein [Xylella fastidiosa 9a5c] Length = 226 Score = 98.2 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 36/205 (17%), Positives = 69/205 (33%), Gaps = 16/205 (7%) Query: 133 AIQFLTSMRVLFKWAVRQEYVA-INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191 A + ++ L+ WA + NPC + R K + D +++ + + Sbjct: 16 ANREVSVFSHLWNWARSKGITDLPNPCGGIRRNKATGRDVYV----DDTTYRAVYQAADR 71 Query: 192 P-RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPI 250 + A + +G R SD + + + I KTG + + + L+ Sbjct: 72 TLKDAMDLAYLTGQRVSDVVSMDERQIIDGALEICQAKTGVKLAIAITGELAVLIKRIFD 131 Query: 251 GKE-------TFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKFSATISADA 300 K ++ +++ T F AG+ K +R +AT AD Sbjct: 132 RKRGLKLRSTRLIVDAKGLELSRTGLRYRFDKARVAAGIAKEVFQFRDLRAKAATDKADL 191 Query: 301 GATAHELMATYGWKTVDQAETYTKG 325 + A G +V E Y + Sbjct: 192 AGDIRQAQAQLGHASVTMTEHYVRK 216 >gi|226326689|ref|ZP_03802207.1| hypothetical protein PROPEN_00542 [Proteus penneri ATCC 35198] gi|225204910|gb|EEG87264.1| hypothetical protein PROPEN_00542 [Proteus penneri ATCC 35198] Length = 237 Score = 98.2 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 35/235 (14%), Positives = 78/235 (33%), Gaps = 19/235 (8%) Query: 61 INSPRKKPTTLKWLISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGDFDYR---KITT 116 +N P P TL I ++ + L+ + ++ + + + + Sbjct: 1 MNQPIDIPETLSTAIEQFLRYIQVERRLSPVTVENYHRQLMALAQMMVAMKITQWISLES 60 Query: 117 KHIRSGVESRKHT---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173 +H+R + + P+S +++R W V Q + +NP + PK + Sbjct: 61 QHVRMLLAKSNRSGLQPTSLALRFSALRSFLDWQVAQGMLEVNPAKGIRTPKSGRHLPKN 120 Query: 174 WTKEDMQQFKS---FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKT 229 +++ Q + + R E + +GLR S+ + + N ++ K Sbjct: 121 MDVDEVSQLMNIDLKDPLSVRDRTMLEVMYGAGLRLSELTNLNISDIDMNEGEVRVLGKG 180 Query: 230 GTIITVELPDGFMKLLAM--------TPIGKETFFINNDKQKMNATQFSIWFKAK 276 V L ++ L P K F ++++ F+ Sbjct: 181 SKERKVPLGRKALEWLQNWFPIRELYAPEDKAVFISTQSGKRLSVRSVQKRFELW 235 >gi|294782426|ref|ZP_06747752.1| integrase/recombinase [Fusobacterium sp. 1_1_41FAA] gi|294481067|gb|EFG28842.1| integrase/recombinase [Fusobacterium sp. 1_1_41FAA] Length = 328 Score = 98.2 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 40/295 (13%), Positives = 93/295 (31%), Gaps = 44/295 (14%) Query: 88 AVNSRISFESYFDQIIRKS--GDFDY---------RKITTKHIRSGV----ESRKHTPSS 132 + + + + + G+ D+ + I + + + + E RK +S Sbjct: 33 SEKTVKDYMFHLKDFLHFVYEGENDFSISEVIPLMQDIEKEDVEAYIVHLFEDRKLKKTS 92 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW--TKEDMQQFKSFWSEGS 190 L++++ L+K NP ++ K + +D+++ + S Sbjct: 93 VNTILSALKSLYKELESNGL--KNPVKYIKLFKVNRNIENVLKVSIDDIRKIIGLYKIDS 150 Query: 191 QPR----LAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVELPDGFM 242 + + L Y+G+R + +H F + K+G + + + Sbjct: 151 EKKYRNITILYTLFYTGMRSKELLTLQFKHFLRREDEYFFKLVQTKSGKDVYKPIHKSLV 210 Query: 243 K-------------LLAMTPIGKETFFINN--DKQKMNATQFSIWFKAKATKAGVNKSAH 287 K L + + F + + ++ ++ + + S H Sbjct: 211 KKLEEYRSYLMNMYSLDSKDLDEHYIFATSVLNNSPLSYRSLNVIIQDMGKLIEKDISPH 270 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342 +R AT + GA E+ G E Y R L K ++ + Sbjct: 271 NIRHAIATELSLNGADILEIRDFLGHSDTKVTEVYINA--RSVLEKKVLEKLPEI 323 >gi|229826012|ref|ZP_04452081.1| hypothetical protein GCWU000182_01376 [Abiotrophia defectiva ATCC 49176] gi|229789754|gb|EEP25868.1| hypothetical protein GCWU000182_01376 [Abiotrophia defectiva ATCC 49176] Length = 331 Score = 98.2 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 33/248 (13%), Positives = 81/248 (32%), Gaps = 14/248 (5%) Query: 88 AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH----TPSSAIQFLTSMRVL 143 + + + + ++ K+ + RKITT+ +R + + + + ++ Sbjct: 70 SERTIKFYRTTIKHLLSKT-KTNVRKITTEEMRKYLSDYQKWNNCSNVTIDNVRRNISSF 128 Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSG 203 F W ++Y+ +P + + K KT + E +++ + E + + L +G Sbjct: 129 FSWLEEEDYILKSPMKRIHKIKTKTVVKSTISDEGIEKLRDNCKE-KRDLAIIDLLYSTG 187 Query: 204 LRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDG----FMKLLAMTPIGKETFFIN 258 +R + + + I K V + + F+ Sbjct: 188 IRVGELVNLNIDDIDFEGRECIVYGKGDKERRVYFDAKAKVHLKEYVDTRSDTNSALFVT 247 Query: 259 --NDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKT 315 ++ + I + + + H R+ AT + D G ++ G Sbjct: 248 LDAPYDRLKISGVEIRLRELGRSLNIERIHPHKFRRSMATRAIDKGMPIEQVQKILGHSQ 307 Query: 316 VDQAETYT 323 +D Y Sbjct: 308 IDTTMQYA 315 >gi|239813909|ref|YP_002942819.1| integrase family protein [Variovorax paradoxus S110] gi|239800486|gb|ACS17553.1| integrase family protein [Variovorax paradoxus S110] Length = 356 Score = 98.2 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 41/290 (14%), Positives = 84/290 (28%), Gaps = 39/290 (13%) Query: 74 LISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESR---K 127 + +Y + LA + + + + + + ++ T HIR + Sbjct: 12 WVDKYLEHVRVERRLAARTVELYAIHLQALAANAAEAGLPLDRVQTAHIRRWMAQLHGAG 71 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 P L+ R ++W + V NP V PK + +D + + Sbjct: 72 REPRGIALVLSCWRSFYRWLGNEGLVGFNPVKDVHAPKAARPLPKALAVDDAVRLAELYD 131 Query: 188 E------GSQPRLAFEFLLYSGLRCSDSCRA--GVQHLQNNIFSIKT------QKTGTII 233 ++ E L GLR S+ + + K Sbjct: 132 PEADPWTEARDGAIVEVLYGCGLRVSELTGLDARASNTARGWVDLDALEANVLGKGSKRR 191 Query: 234 TVELPDGFMKLLA-----------------MTPIGKETFFINNDKQKMNATQFSIWFKAK 276 V + + L P G FI+ +M++ + + Sbjct: 192 IVPIGSKAAEALRDWFAVRGECAALSTAALRDPAGAAALFISAKGVRMSSQAVWKLLRER 251 Query: 277 ATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 + KAG+ H +R A+ + + + G + + YT+ Sbjct: 252 SLKAGLAAPVHPHMLRHSFASHVLQSSSDLRAVQELLGHANIATTQVYTR 301 >gi|146299694|ref|YP_001194285.1| phage integrase family protein [Flavobacterium johnsoniae UW101] gi|146154112|gb|ABQ04966.1| phage integrase family protein [Flavobacterium johnsoniae UW101] Length = 297 Score = 98.2 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 33/210 (15%), Positives = 79/210 (37%), Gaps = 17/210 (8%) Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ--QFKSFWSEG 189 S + + S++ +K+ ++ + + ++P L + K P++++++ F G Sbjct: 70 SVNRKMASLKAFYKFLLKIKQIEVSPMLKHKALKTPKIVQIPFSEKEVSDLMFGVESPIG 129 Query: 190 S---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLL 245 + +L + +G+R ++ ++++ + +K K V L + Sbjct: 130 FEEVRDKLIVDLFYTTGMRRAELIGLMLKNVDLSSGVVKVLGKRSKERIVPLLPIVADQI 189 Query: 246 AM---------TPIGKETFFINNDKQKMNATQFSIWFKAK--ATKAGVNKSAHGVRKFSA 294 + + E FFI+ K++ + V KS H +R A Sbjct: 190 NLYIKEREQLDQIVDSEYFFISKKGLKLSESFVYRLINCYFSRVSEKVKKSPHVLRHTFA 249 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTK 324 T + GA + + G ++ + YT Sbjct: 250 THLLNNGADLNSVKELLGHSSLASTQVYTH 279 >gi|228996473|ref|ZP_04156112.1| DNA integration/recombination/invertion protein [Bacillus mycoides Rock3-17] gi|228763105|gb|EEM12013.1| DNA integration/recombination/invertion protein [Bacillus mycoides Rock3-17] Length = 256 Score = 98.2 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 35/239 (14%), Positives = 74/239 (30%), Gaps = 32/239 (13%) Query: 117 KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176 ++ + + + + + +R + A+ E + N + PK E + W + Sbjct: 2 QNYVNSLRDEGLKRGTIEKIIKVIRNSLEHAIDLELITKNVAAKTKLPKVDKEELTVWNE 61 Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK----------- 225 +++Q F + S+ + F L +G+R + + + + ++ Sbjct: 62 QEVQLFLKTAQD-SRYSIVFHMALVTGMRQGELLGLRWKDVDLDKGNLTISQTLSHDGKT 120 Query: 226 ---TQKTGTIITVELPDG-----FMKLLAMTPIGK----------ETFFINNDKQKMNAT 267 KT + + L K A+ K + +N Sbjct: 121 FLLGGKTKSSLRKILLPASTIAKLKKHRAVVLKEKLSQGEEYHDNDLVMCTPSGTPINPA 180 Query: 268 QFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324 A KA V K H +R AT+ G + G + +TY+ Sbjct: 181 NVRRSLNALIQKAAVPKIRFHDLRHTHATLLLAKGVNVKVISERLGHSNIKITLDTYSH 239 >gi|254462175|ref|ZP_05075591.1| phage integrase [Rhodobacterales bacterium HTCC2083] gi|206678764|gb|EDZ43251.1| phage integrase [Rhodobacteraceae bacterium HTCC2083] Length = 295 Score = 98.2 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 44/284 (15%), Positives = 90/284 (31%), Gaps = 18/284 (6%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133 L + + ++ ++ + G T +R+ S Sbjct: 9 LRTRMIEDMRIRGMSPKTQQTHIRAVRYFSEFIGRSPDTA-TPDELRAYQLHMTDAGVST 67 Query: 134 ---IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM-QQFKSFWSEG 189 + S+R F +E + ++ ++ + + E++ + G Sbjct: 68 GVFNARIVSLRFFFGMTCGREEMKR----FMQFRRKAKKLPVVLSVEEVGDLLAAVPGPG 123 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTIITVELPDGFMKLLA- 246 + R A +GLR S+ C + + ++ + K L G + LL Sbjct: 124 LKYRAALGISYGAGLRASEVCNLKISDIDSDRMLIHVDEGKNDKDRKAMLSPGSLDLLRD 183 Query: 247 --MTPIGKETFFINNDK-QKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAG 301 + F K ++ Q + F + AG+NK + H +R AT +AG Sbjct: 184 YWREARPEGWLFPGKPKIMALSPRQLNRAFTSAKHMAGINKPATLHTLRHSFATHLLEAG 243 Query: 302 ATAHELMATYGWKTVDQAETYTKGADR-IRLGIKNSRRISSVVD 344 + G + YT A + IR + + + D Sbjct: 244 TDVRVIQVLLGHSKLSTTARYTHVATKTIRGTVSPYEMLEKLQD 287 >gi|296268973|ref|YP_003651605.1| integrase family protein [Thermobispora bispora DSM 43833] gi|296091760|gb|ADG87712.1| integrase family protein [Thermobispora bispora DSM 43833] Length = 292 Score = 98.2 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 39/265 (14%), Positives = 87/265 (32%), Gaps = 27/265 (10%) Query: 85 GSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSGV---ESRKHTPSSAIQFLT 138 L+ ++ ++ + +R +G ++ +R+ + + ++ + + Sbjct: 13 RDLSPHTVRAYLGDVASLFAHLRATGRERIAELDITDLRAWLGEQHRAGLSRTTLARRIA 72 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS----FWSEGSQPRL 194 R + R+ ++A +P + K + T+E Q S + + Sbjct: 73 CARTFTAFCHRRGWLAHDPGPLLGTTKAERRLPAVLTQEQAQAALSPPVSGDPKELRDHA 132 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFMKLLAMTPIGK- 252 E L +G+R S+ C + + +I+ G TV + L + Sbjct: 133 IMELLYATGIRVSELCALDLGDVDRERNTIRVMGKGRKERTVPFGQPAARALDAWCVRGR 192 Query: 253 ---------ETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA----HGVRKFSATISAD 299 F+ +++ A AGV + HG+R AT + Sbjct: 193 PQWVRDGTPPALFLGVRGGRIDPGTVRRVV--HARLAGVPGAPGMGPHGIRHTMATHLLE 250 Query: 300 AGATAHELMATYGWKTVDQAETYTK 324 GA + G ++ + YT Sbjct: 251 GGADLRSVQEILGHASLATTQLYTH 275 >gi|188994781|ref|YP_001929033.1| tyrosine type site-specific recombinase [Porphyromonas gingivalis ATCC 33277] gi|188594461|dbj|BAG33436.1| tyrosine type site-specific recombinase [Porphyromonas gingivalis ATCC 33277] Length = 420 Score = 98.2 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 38/283 (13%), Positives = 92/283 (32%), Gaps = 26/283 (9%) Query: 77 EYRKSAHWG---SLAVNSRISFESYFDQIIRKSGD-FDYRKITTKHIRSGVESRKHTPS- 131 Y + A + + + + ++++ D + +G+ + KI P Sbjct: 132 SYFREAMYKRHKNSSTSILVNWKRAMDFLKMYAGENLPFFKIDNAFAEEYKRFLLTAPRG 191 Query: 132 ----------SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 +A + + + K A Y+ ++ ++ + + T E++ Sbjct: 192 GNKCGTISHNTASTYFSIFKAALKQAFIDGYLTVDISAKIKGIQEQESRREYLTVEELNT 251 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQKTGTIITVEL 237 S + + A F +GLR D + + + + +KT + + + Sbjct: 252 LASTPCDREVMKRAALFSALTGLRHCDIQKLKWKEINMDGEQPRLHFTQKKTKGVEYMPI 311 Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSAT 295 + ++L + ++ F + + K AG+ KS H R AT Sbjct: 312 SEQALQLCGERGLPEQLVFEDLPDPSWISKPL----KRWIEAAGIKKSISFHCFRHSYAT 367 Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADRIR-LGIKNSR 337 + + + + G V + Y K D + + + Sbjct: 368 LQFASSTDIYTVSKMLGHTNVKTTQIYAKVVDEKKNKAAQAIK 410 >gi|256832233|ref|YP_003160960.1| integrase family protein [Jonesia denitrificans DSM 20603] gi|256685764|gb|ACV08657.1| integrase family protein [Jonesia denitrificans DSM 20603] Length = 333 Score = 98.2 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 45/242 (18%), Positives = 79/242 (32%), Gaps = 31/242 (12%) Query: 114 ITTKHIRSGVES---RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170 IT + +R + + + S+ + S R F W V + +P + P + Sbjct: 75 ITLEELREWLAHSLTQNLSRSTIARRGASARQFFAWLVERGIRHDDPSKRLTTPTPHSAL 134 Query: 171 IRPWTKEDMQQFKS-----FWSEGS------------QPRLAFEFLLYSGLRCSDSCRAG 213 T ++Q + + E + + R A E SGLR ++ Sbjct: 135 PHVLTVAQVKQLLAAVERVYLPETTDTNTELSRARTDRLRAAVELTYSSGLRIAELVSLN 194 Query: 214 VQHLQNNIFSIK-TQKTGTIITVEL-PDGFMKLLA--------MTPIGKETFFINNDKQK 263 V + + I+ T K V L L M +E F+ + Sbjct: 195 VGDIDHEQRVIRVTGKGNKQRRVPLGLPALQALERWIAESRPIMQSTSEEALFLGVRGGR 254 Query: 264 MNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 NA Q A A ++ H +R +AT + GA + G ++ + Y Sbjct: 255 WNARQVRDELNKAALHADLDVVRPHDLRHTTATHLLEGGADLRSVQEILGHSSLRTTQRY 314 Query: 323 TK 324 T Sbjct: 315 TH 316 >gi|150402804|ref|YP_001330098.1| phage integrase family protein [Methanococcus maripaludis C7] gi|150033834|gb|ABR65947.1| phage integrase family protein [Methanococcus maripaludis C7] Length = 291 Score = 98.2 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 35/252 (13%), Positives = 85/252 (33%), Gaps = 16/252 (6%) Query: 88 AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWA 147 +++ + ++ + + + ++ + ++ + +LT + V F + Sbjct: 28 SLSYNKNLKNIILNFMEFIKKDSFMNVEVSDAIFYYNNKSCSKNTKLSYLTYLNVFFDFC 87 Query: 148 VRQEYVAINPCLSV-ERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRC 206 V Y+A NP + K + T++ + S + + R + FL+ +GLR Sbjct: 88 VDNNYIAKNPISKYRKSMKPSKKERVYLTEKHQELVFSRLKD-FEFRFMYVFLVQTGLRR 146 Query: 207 SDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMT--------PIGKETFF 256 + + + I +K K V + D L P+ +++F Sbjct: 147 GEFLNLKFIDVDLDDRIIHVKGGKGDKYRFVPISDELYMYLKRWNYERALRYPV-DDSYF 205 Query: 257 INNDKQKMN---ATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGW 313 ++ ++ + FS + + + H +R AT + L G Sbjct: 206 VSKKGKRQSNKIYASFSEYIDRAVPNLHIRVTPHILRHTFATNCINKKMDLKTLSLILGH 265 Query: 314 KTVDQAETYTKG 325 + + Y Sbjct: 266 EDIATTSIYLHK 277 >gi|300772355|ref|ZP_07082225.1| integrase [Sphingobacterium spiritivorum ATCC 33861] gi|300760658|gb|EFK57484.1| integrase [Sphingobacterium spiritivorum ATCC 33861] Length = 413 Score = 98.2 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 64/325 (19%), Positives = 115/325 (35%), Gaps = 45/325 (13%) Query: 57 KREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISF---ESYFDQIIR-KSG--DFD 110 K Y+ ++ TL L+ Y K LA + ++ E+Y + I+ K G D Sbjct: 100 KSVYLGEDIEETMTLLKLVE-YHKQVAVSKLAPGTMKNYYTTETYIQKFIKQKYGKKDIP 158 Query: 111 YRKITTK---HIRSGVESRK----HTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLS 160 ++ + + + K H P + + + +R + AV +++ +P Sbjct: 159 LDELNYRFILDFENFLNDYKPKDHHKPINNNGVMKHMERLRKMVNLAVTMDWLVRDPFAK 218 Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL-----AFEFLLYSGLRCSDSCRAGVQ 215 + K E +KE++ + S RL F F Y+GL D + Sbjct: 219 YKLRFEKVERGH-LSKEELTVLLN--KSFSIERLQSVSDMFIFSCYTGLAYIDIFNLTPE 275 Query: 216 HLQNN-----IFSIKTQKTGTIITVELPDGFMKLL-----AMTPIGKETFFINNDKQKMN 265 ++ + K QKT T + V L LL T F Q+MN Sbjct: 276 NISKGIDGKDWLTTKRQKTDTTVRVPLLPEASDLLKKYRGHPVAEANGTIFPVISNQRMN 335 Query: 266 ATQFSIWFKAKATKAGVNK--SAHGVRKFSAT-ISADAGATAHELMATYGWKTVDQAETY 322 + K A G+NK + H R AT ++ G + G ++ + Y Sbjct: 336 G-----YLKEIAEICGINKNLTFHLARHTFATTVTLSNGVPIESVSKMLGHTSIRTTQIY 390 Query: 323 TKGADRIRLGIKNSRRISSVVDSDD 347 K + ++ ++ + S D Sbjct: 391 AKVLEHKL--SEDMHKLEVRMASQD 413 >gi|262067553|ref|ZP_06027165.1| integrase/recombinase [Fusobacterium periodonticum ATCC 33693] gi|291378728|gb|EFE86246.1| integrase/recombinase [Fusobacterium periodonticum ATCC 33693] Length = 328 Score = 98.2 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 40/295 (13%), Positives = 93/295 (31%), Gaps = 44/295 (14%) Query: 88 AVNSRISFESYFDQIIRKS--GDFDY---------RKITTKHIRSGV----ESRKHTPSS 132 + + + + + G+ D+ + I + + + + E RK +S Sbjct: 33 SEKTVKDYMFHLKDFLHFVYEGENDFSISEVIPLMQDIEKEDVEAYIVHLFEDRKLKKTS 92 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW--TKEDMQQFKSFWSEGS 190 L++++ L+K NP ++ K + +D+++ + S Sbjct: 93 VNTILSALKSLYKELESNGL--KNPVKYIKLFKVNRNIENVLKVSIDDIRKIIELYKIDS 150 Query: 191 QPR----LAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVELPDGFM 242 + + L Y+G+R + +H F + K+G + + + Sbjct: 151 EKKYRNITILYTLFYTGMRSKELLTLQFKHFLRREDEYFFKLVQTKSGKDVYKPVHKSLV 210 Query: 243 K-------------LLAMTPIGKETFFINN--DKQKMNATQFSIWFKAKATKAGVNKSAH 287 K L + + F + + ++ ++ + + S H Sbjct: 211 KKLEEYRSYLMNMYSLDSKDLDEHYIFATSVSNNSPLSYRSLNVIIQDMGKLIEKDISPH 270 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342 +R AT + GA E+ G E Y R L K ++ + Sbjct: 271 NIRHAIATELSLNGADILEIRDFLGHSDTKVTEVYINA--RSVLEKKVLEKLPEI 323 >gi|239983801|ref|ZP_04706325.1| integrase [Streptomyces albus J1074] gi|239983807|ref|ZP_04706331.1| integrase [Streptomyces albus J1074] gi|291455603|ref|ZP_06594993.1| phage integrase [Streptomyces albus J1074] gi|291455609|ref|ZP_06594999.1| phage integrase [Streptomyces albus J1074] gi|291358552|gb|EFE85454.1| phage integrase [Streptomyces albus J1074] gi|291358558|gb|EFE85460.1| phage integrase [Streptomyces albus J1074] Length = 385 Score = 98.2 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 65/371 (17%), Positives = 123/371 (33%), Gaps = 46/371 (12%) Query: 11 VTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT- 69 VT+ + + Y G R+R + + ST+ A + G ++E P T Sbjct: 12 VTRRKDGRYQGAAYVTNTDGHRVR-KFVYGSTYDEA--AEKLGKLQEQERNGVPVPSRTW 68 Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH 128 +L ++ + + + N+ + +ES ++ G ++T +RS + K Sbjct: 69 SLGEWLAYWLEHIVKPNREHNTYVKYESKVRLYLVPHLGMKPMARLTPAQLRSFMAELKR 128 Query: 129 T---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 T P++ + L +R AVR+E + N V+ PK + +PW+ + F Sbjct: 129 TEVPPAARFEVLRVLRNALNRAVREELLTRNVAELVDMPKVTKKEAKPWSAREAIAFLRS 188 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII------------ 233 + A +L GLR S+ Q + + K + Sbjct: 189 ARAH-RLYAACVLVLVLGLRRSEVLGLRWQDIDFDQRQFTPLKQVQRVKGIGLVLKDLKT 247 Query: 234 -----TVELPDGFMKLLA-----------------MTPIGKETFFINNDKQKMNATQFSI 271 + LP+ + L G++ F + ++ FS Sbjct: 248 ESSHAVLPLPEFCARALKERRELQDLERRIVGDAWSQEAGQDLIFSSERGGPIDPVGFSR 307 Query: 272 WFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGA-DR 328 F A +AGV + + R T+ A A + + YT D Sbjct: 308 TFNALVKRAGVRRITVRLARHTCGTLLAFLKVHPKVAQAILRHSQISMTMDVYTHVVGDG 367 Query: 329 IRLGIKNSRRI 339 R + + Sbjct: 368 EREAVTMLAEL 378 >gi|323137229|ref|ZP_08072308.1| integrase family protein [Methylocystis sp. ATCC 49242] gi|322397587|gb|EFY00110.1| integrase family protein [Methylocystis sp. ATCC 49242] Length = 316 Score = 98.2 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 46/280 (16%), Positives = 90/280 (32%), Gaps = 36/280 (12%) Query: 85 GSLAVNSRISFESYFDQIIRKS-----GDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139 A N++ ++ I D + + +E R + ++ + +++ Sbjct: 20 RGAAQNTQDAYRRDLADYIDFLRGQGTNPDDVTSDGVRAYLASLEPRGMSAATVARRISA 79 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS-------QP 192 +R K+ + +P ++E P+R + ++ + S EG + Sbjct: 80 IRQFHKFLYVDRHRGDDPAAALEGPRRVRSAPGVMSVAEVDRLLSVAREGLDDEKRPLRE 139 Query: 193 RLA-------FEFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQKTGTIITVELPDGFMK 243 RL E L +GLR S+ ++ +I+ K G L D Sbjct: 140 RLRAARLYALLETLYATGLRVSELVSLPKSAARARDPFITIR-GKGGRERLAPLTDRAKS 198 Query: 244 LLA-----------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS---AHGV 289 LA G F ++D + F+ K AG++ + H + Sbjct: 199 ALADYRKLLDATAPGLAEGPFLFPADSDSGHLTRQAFARDLKMLGVVAGLSAAQVHPHAL 258 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 R A+ GA + G + + YT D Sbjct: 259 RHAFASHLLQNGADLRVVQELLGHADISTTQIYTHVLDER 298 >gi|299536758|ref|ZP_07050066.1| tyrosine recombinase xerC [Lysinibacillus fusiformis ZC1] gi|298727770|gb|EFI68337.1| tyrosine recombinase xerC [Lysinibacillus fusiformis ZC1] Length = 299 Score = 98.2 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 42/263 (15%), Positives = 89/263 (33%), Gaps = 23/263 (8%) Query: 85 GSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFLT 138 + +V++ +ES + + G D + H R V K +S + ++ Sbjct: 20 KNFSVHTVREYESDLLDFLTFLQTEGIDDLASVEYIHARLYVTKLYDEKRARASISRKIS 79 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRL 194 S+R F++ RQ + S+ PK+++ + +E+++Q + + Sbjct: 80 SIRSFFRFLNRQYGLDDGAFRSLYHPKKESRLPNFFYEEELKQLFDANTGDDLKSLRNIA 139 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------ELPDGFMKLL 245 E L +G+R S+ V+ + + I+ G + + D + Sbjct: 140 ILELLYATGIRVSELTSIQVEDVDFHYSIIRVMGKGRKERIIPFGQFASLAMQDYIEQAR 199 Query: 246 AMT--PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAG 301 F+N ++ KA ++ H +R AT + G Sbjct: 200 PRLMKKTNHLQLFVNMRGGELTPRGVRHILNEMIDKASLHTKIYPHMLRHTFATHLLNNG 259 Query: 302 ATAHELMATYGWKTVDQAETYTK 324 A + G + + YT Sbjct: 260 ADLRTVQELLGHSHLSSTQVYTH 282 >gi|218754387|ref|ZP_03533183.1| integrase [Mycobacterium tuberculosis GM 1503] gi|289762820|ref|ZP_06522198.1| integrase [Mycobacterium tuberculosis GM 1503] gi|289710326|gb|EFD74342.1| integrase [Mycobacterium tuberculosis GM 1503] Length = 435 Score = 98.2 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 42/256 (16%), Positives = 87/256 (33%), Gaps = 10/256 (3%) Query: 44 IPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII 103 + A+++A S K P + + I +Y + + + ++ Sbjct: 46 VEAFLAA-AKSQNKPPGPPPSLHAPPSWRRDIDDYLLNLNAAGQRPATIRLRKTVLCAAA 104 Query: 104 RKSGDFDYRKITTKHIRSGVESRKH-TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE 162 G +T +H+ + ++H +P + +++R F WA + V S+ Sbjct: 105 HGLG-RPPADVTAEHLLDWLGKQQHLSPEGRKTYRSTLRGFFVWAYEMDRVRDYVADSLP 163 Query: 163 RPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222 + + + RP + Q + + L +GLR +++ +A L + Sbjct: 164 KVRCPKQPPRPAGDDVWQAALAKADR--RIELMIRLAGEAGLRRAEAAQAHTGDLMDGGL 221 Query: 223 SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282 + K G V + D L+ TP G F N + A Sbjct: 222 LLVHGKGGKRRIVPISDYLAALIRDTPHG--YLFPNGTGGHLTAEHVGKLVSRALPG--- 276 Query: 283 NKSAHGVRKFSATISA 298 + + H +R AT + Sbjct: 277 DATMHTLRHRYATRAY 292 >gi|197301291|ref|ZP_03166376.1| hypothetical protein RUMLAC_00022 [Ruminococcus lactaris ATCC 29176] gi|197299609|gb|EDY34124.1| hypothetical protein RUMLAC_00022 [Ruminococcus lactaris ATCC 29176] Length = 411 Score = 98.2 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 56/394 (14%), Positives = 111/394 (28%), Gaps = 74/394 (18%) Query: 19 GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEY 78 G+ +Y + GRR Y + + + + ++ T+ ++ Y Sbjct: 24 GRYVYTYTDPLGRR---KYVYTQDLVTLREKEAQLMKDQMDGLDIYVAGKATINFVFDRY 80 Query: 79 RKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFL 137 + +L ++ ++ +D+ I G + +I + I L Sbjct: 81 MSLKN--NLKPTTKSNYLYMYDRFIRDTFGKRNIAEIKYSDVVQFYNHLIEKQELKINTL 138 Query: 138 TSMRVL----FKWAVRQEYVAINPCLSV-----ERPKRKTEGIRPWTKEDMQQFKSF--- 185 ++ L F+ AVR + + NP V + KT T + F + Sbjct: 139 ETIHTLLHPTFQLAVRDDIIRKNPTDGVMAELKKNLGMKTGVRHALTIPQQRAFMEYIAT 198 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIF--------------------SI 224 F L +G R + + + I Sbjct: 199 HPIYFHWWPIFTIFLGTGCRIGEVLGLRWEDINYEKRIISINHNLTYYPVGEDRASENHI 258 Query: 225 KTQKTGTII-TVELPDGFMKLLAM------------TPIGKET--FFINNDKQKMNATQF 269 T KT + T+ + D M I T F N MNA Sbjct: 259 STPKTEAGMRTIPMLDTVKDAFEMIWEEQKENGWTDAEIDGMTGFVFCNRYGNIMNAQSV 318 Query: 270 SIWFKA--------KATKAGVNK---------SAHGVRKFSATISADAGATAHELMATYG 312 + K + +A SAH +R T + + + G Sbjct: 319 NRAIKRISSAYNATEEVEAKKEHREPVLLPDFSAHSLRHTFCTRLCERETNLKIIQSIMG 378 Query: 313 WKTVDQA-ETYTKGADRIRLGIKNSRRISSVVDS 345 K + + Y + + + + +++ +D Sbjct: 379 HKDIQTTMDIYAEATEEKK--QETFEHLAATMDV 410 >gi|197301719|ref|ZP_03166789.1| hypothetical protein RUMLAC_00445 [Ruminococcus lactaris ATCC 29176] gi|197299159|gb|EDY33689.1| hypothetical protein RUMLAC_00445 [Ruminococcus lactaris ATCC 29176] Length = 375 Score = 98.2 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 58/363 (15%), Positives = 117/363 (32%), Gaps = 61/363 (16%) Query: 34 RLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRI 93 ++ P S A S + R+ TL +Y ++ + + +RI Sbjct: 11 KISSPDSSEVFDASPSKTYHEQAYIDQTLRLREILKTLPAFTKDYFRAVE-PTTSARTRI 69 Query: 94 SFESYF---------------DQIIRKSGDFDYRKITTKHIRSGVESRK----------- 127 S+ + I + D ++ I E K Sbjct: 70 SYAYDIRVFFHFLMEVNPHYKNYTIDQFTVQDLERLDPVDIEEYQEYLKVYKNEEDRQIT 129 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 +T + ++++R + + +++ ++ NP L V+ PK + I +++ + Sbjct: 130 NTEKGLSRKMSALRSFYGYYFKRQIISKNPTLLVDMPKLHEKAIIRLDTDEIAMLLDYVE 189 Query: 188 EG----SQPRLAF------------EFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKT 229 G + RLA+ LL +G+R S+ VQ + NN + T+K Sbjct: 190 HGGENLTGQRLAYYEKTKNRDLAILTLLLGTGIRVSECVGLDVQDVDFKNNGIKV-TRKG 248 Query: 230 GTIITVELPDGFMKLLAM-----------TPIGKETFFINNDKQKMNATQFSIWFKAKAT 278 G + V + L + F++ +++M K A Sbjct: 249 GNEMVVYFGEEVEHALKTYLYTTRKSTVPLSGHENALFLSTQRKRMGVQAVENMVKKYAR 308 Query: 279 KAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK-GADRIRLGIK 334 + NK + H +R T + + G K V+ + Y +R R Sbjct: 309 EVTPNKKITPHKLRSTYGTALYKETGDIYLVADVLGHKDVNTTKKHYAAIDENRRRRAAG 368 Query: 335 NSR 337 + Sbjct: 369 AVK 371 >gi|158520305|ref|YP_001528175.1| integrase family protein [Desulfococcus oleovorans Hxd3] gi|158509131|gb|ABW66098.1| integrase family protein [Desulfococcus oleovorans Hxd3] Length = 403 Score = 98.2 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 48/328 (14%), Positives = 105/328 (32%), Gaps = 32/328 (9%) Query: 23 YYFRKGHGRRI--RLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP---TTLKWLISE 77 +YFRK H ++ R + + + + +++P K T + E Sbjct: 21 FYFRKKHNGKVFKRSLNTTDKRTARDLRNFYLRNLVEYGQLDAPEKVDYDVITFGEVAKE 80 Query: 78 YRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQF 136 + S H + ++ + S + I+ D +IT + K A Sbjct: 81 W-ASIHKKEVRYSTWPDYVSSMNGHILPNFKDMPIAEITYGDVLKFRSGLKVGAKRANNI 139 Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF 196 L M+ +F +A R+ + N ++R + I P++ +++ + QP L Sbjct: 140 LVPMKSVFDYADREGIIQDNVMRKIKRLSEEAPEIHPFSYDEVNRLLDAVHPWYQPYLI- 198 Query: 197 EFLLYSGLRCSDSCRAGVQHLQNN-----IFSIK----------TQKTGTIITVELPDGF 241 ++G+R + + I+ + + ++ Sbjct: 199 -VAFFTGMRAGEQNGLCWSDFLEDMQPEPRIFIRKTYVYKKDGIPKTKKSKRYIKCLPQV 257 Query: 242 MKLL---AMTPIGKETFFINNDKQKMNATQFSI-WFKAKATKAGVNKSA--HGVRKFSAT 295 ++ L + F+ D ++M + KAG+ R AT Sbjct: 258 LEALSEQRKLTGKNKHIFLTIDGRRMTPDHIRKEVWIPALEKAGIEYRPPIQT-RHTFAT 316 Query: 296 ISADAGATAHELMATYGWKTVDQA-ETY 322 + AG + G ++ + Y Sbjct: 317 MMLSAGEDIGWVQNMLGHSSLQMIFQRY 344 >gi|114797932|ref|YP_758814.1| tyrosine recombinase XerD [Hyphomonas neptunium ATCC 15444] gi|114738106|gb|ABI76231.1| tyrosine recombinase XerD [Hyphomonas neptunium ATCC 15444] Length = 309 Score = 98.2 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 38/269 (14%), Positives = 85/269 (31%), Gaps = 30/269 (11%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT---PSSAIQFLTSMR 141 + N+ ++ ++ + + + PS+ + L+++R Sbjct: 18 RGASPNTLDAYGRDLLDASE-FCHLRLVTASSSDLSAWLADLAARGMAPSTQARKLSAVR 76 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY 201 F++ ++ +P ++ P + E ++E++ + + + E L Sbjct: 77 RFFRFLFQEGDRKDDPTARLDGPSPEREVPDVLSREEVGRLIEACGNDKRLKCLVELLYG 136 Query: 202 SGLRCSDSCRAGVQHL----QNNIFS---IKTQKTGT--------IITVELPDGFMKLLA 246 +GLR ++ V +L S I K G + L + A Sbjct: 137 AGLRATELVTLRVGNLPRRKAGQWMSADIIIRGKGGKDRLCPLGRAALIALSEWLEVREA 196 Query: 247 MTP------IGKETFFINNDKQ--KMNATQFSIWFKAKATKAGVNKS---AHGVRKFSAT 295 P +E F + + + + + A +AG+ H +R AT Sbjct: 197 SLPDNPLMRSKQEGFVFPSRGKEGHLTRRRLGQMLEDLAGEAGLRSERVYPHALRHAYAT 256 Query: 296 ISADAGATAHELMATYGWKTVDQAETYTK 324 GA + G + + YT Sbjct: 257 HLLQGGADLRVVQTLLGHADIATTQIYTH 285 >gi|239906151|ref|YP_002952890.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1] gi|239796015|dbj|BAH75004.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1] Length = 347 Score = 98.2 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 60/350 (17%), Positives = 108/350 (30%), Gaps = 26/350 (7%) Query: 12 TKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALT-----GSTPKREYINSPRK 66 R +G +R G++ + A GS R + Sbjct: 3 VHMRKNNGTYYVAYRNAEGKQTTKTFGKGREGRRAAQKFDKQVKDHGSVQPRTPEAISEE 62 Query: 67 KPTT----LKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRS 121 T L L Y S ++ + +S+ +I +I I Sbjct: 63 VAVTGKLYLDQLAQMYINSRKVEGTSIRTLNEIKSFLKRHLIPVFAQRPVEEIKYDEIVK 122 Query: 122 GVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179 V +P + ++L+ ++ +FK+ V + + NP +P+ K + T +D+ Sbjct: 123 IVAKAYENRSPVTRGRYLSYLKTVFKFGVEHDLIEKNPLRQWHKPREKPRDTK-LTVDDL 181 Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLR--CSDSCRAGVQHLQ--NNIFSIKTQKTGTIITV 235 QQ K+ A E G+R S+ + ++ KT T TV Sbjct: 182 QQIKAAAEPHLA--WAIEVAWNLGVRTGPSELLALTWDDISWAEKTINVFATKTNTRRTV 239 Query: 236 ELPDG-FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKF 292 L D +L + + + Q S + +AG+ + VR Sbjct: 240 PLSDEFLARLQEKKATAQCERIVEYHGRP--VKQISRAMRTACRRAGITYPVVLYDVRHL 297 Query: 293 SATISADAGATAHELMATYGWKTVDQAE--TYTKGADRIRLGIKNSRRIS 340 AT + G + G ++ Y D R I R+ Sbjct: 298 FATTLLNEGGDLSAVSKLMGHSSIQMTANNYYHLLGDEKRRTIARLPRLE 347 >gi|218782611|ref|YP_002433929.1| integrase family protein [Desulfatibacillum alkenivorans AK-01] gi|218763995|gb|ACL06461.1| integrase family protein [Desulfatibacillum alkenivorans AK-01] Length = 409 Score = 98.2 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 59/355 (16%), Positives = 114/355 (32%), Gaps = 52/355 (14%) Query: 20 KIIYYFRKGHGRRI--RLPYPHESTFIPAYMSALTGST---------PKREYINSPRKKP 68 +I Y F + G++I + ++ PA + + +RE + + ++ Sbjct: 29 RIYYIFYRKDGKQIEEKAGRQYQDDMTPARAAGIRAQRIQGKEATNEERREEVRAAKEAE 88 Query: 69 T---TLKWLISEYRKSAHWGSLA--VNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123 TL + EY+ A L V + +ESY + + +++ +R + Sbjct: 89 AGRWTLDRIWEEYK--AQRPDLKGIVTDQNRYESYLQPVFGDKTPSEIQQLEVDRLRINM 146 Query: 124 ESRKH----------------------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV 161 ++ TP + L +R + + R+ + Sbjct: 147 LTKPRKPPRFRNGKRMEKPKNGKLPPLTPQTVKNTLEILRRIINFGERKGLCEG-LGFKI 205 Query: 162 ERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA--FEFLLYSGLRCSDSCRAGVQHLQ- 218 PK T + ++ E + +A + LYSG+R + + H+ Sbjct: 206 TFPKVDNTKTEDLTPDQLRDLLKAIDEATNTEVAAIMKMALYSGMRRGELLKLQWDHVDF 265 Query: 219 -NNIFSIKTQKTGTIITVELPDGFMKLLA-MTPIGKETFFINNDKQKMNATQFSIWFKAK 276 I K G V L D LL + F ++ + Sbjct: 266 ERGFIHIVDPKGGASQKVPLNDASRALLENRSRTDSPYVFPGKGGKQRVCIRHEAN--KI 323 Query: 277 ATKAGVNKSA---HGVRKFSATISADAGA-TAHELMATYGWKTVDQAETYTKGAD 327 KAG+ K HG+R A++ A +G + L K+ + Y D Sbjct: 324 KEKAGLPKDFRAMHGLRHTYASMLASSGKVDMYTLQKLLTHKSPQMTQRYAHLRD 378 >gi|317487260|ref|ZP_07946055.1| phage integrase [Bilophila wadsworthia 3_1_6] gi|316921450|gb|EFV42741.1| phage integrase [Bilophila wadsworthia 3_1_6] Length = 347 Score = 98.2 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 56/279 (20%), Positives = 101/279 (36%), Gaps = 29/279 (10%) Query: 65 RKKPTTLKWLISEYR---KSAHWGSLAVNSRISFESYFDQIIRKSGD-FDYRKITTKHIR 120 + T W + + KS +W A + +++ S F I G+ KIT I Sbjct: 64 KDPDDTSGWTLKQAYDRTKSLYWEDSAWSYKVA--SNFKSISTYFGETMPIGKITLDDID 121 Query: 121 SGVES---RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177 V + + ++ + + L + +F+ AV + + + P + K +R T+E Sbjct: 122 DYVNTLLTKGNSNGTINRKLAILSRIFRTAVERGKLEVVP--KIPLRKEAHHRVRFLTQE 179 Query: 178 DMQQF-KSFWSEGSQPRL-AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT--QKTGTII 233 + F K+F G F LLY+G R + R + + + +I K G Sbjct: 180 EENAFVKAFIQNGYNTHAEVFLILLYTGFRLGECWRIECRDINLELGTITAWKTKNGHPR 239 Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFK----AKATKAGVNKS---- 285 T+ + D +L F + K+ T + WF+ G+ K Sbjct: 240 TIPIVDKIRPILERK------IFEAGENGKLFPTADNRWFESAWNRIKRLLGLEKDVQLV 293 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R A+ A G + + G + YT Sbjct: 294 PHALRHTCASRLAQRGVSMMVIKEWMGHSNIKTTMRYTH 332 >gi|89892756|ref|YP_516243.1| hypothetical protein DSY0010 [Desulfitobacterium hafniense Y51] gi|89332204|dbj|BAE81799.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 395 Score = 98.2 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 58/301 (19%), Positives = 111/301 (36%), Gaps = 53/301 (17%) Query: 74 LISEYRKSAHWGSLAV-----NSRISFESYFD-QIIRKSGDFDYR--KITTKHIRSGVES 125 L ++Y + W + A + +++ D +I R + + ++T +HI+ +S Sbjct: 66 LFTDYLQ--KWLTQAKPTIAKTTFKGYQTMLDGRISRYFTELNITLGEVTPQHIQDFHQS 123 Query: 126 ---RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 HTP++ I + +R + AV++E + NP V+RPK+ + ++ E+M Sbjct: 124 IFDEGHTPNTVIHYHAVLRRALQNAVKKEIIDSNPADRVDRPKKNVYHAQFYSAEEMMAL 183 Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSIK--------------- 225 S+ + + Y GLR S+ +L+ SIK Sbjct: 184 FDEISDDPLE-ICVKLAAYYGLRRSEVLGLKWDAINLEQKTISIKHKVIEDTVDGKSIAV 242 Query: 226 ---TQKTGTI-ITVELPDGFMKLLAMTPIGKETF----------------FINNDKQKMN 265 KT + T+ L KLL +E + ++ + M Sbjct: 243 GEDVLKTKSSFRTLPLLPSVEKLLLAEKEKQEMYRKLFKRSYCRDYLDYICLDQAGKLMR 302 Query: 266 ATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYT 323 + F KA + K H +R A++ G + ++ G T A+ Y+ Sbjct: 303 PNYVTEHFSWALEKADLKKIRFHDLRHSCASLLLANGISMKQIQIWLGHSTFSTTADIYS 362 Query: 324 K 324 Sbjct: 363 H 363 >gi|300727313|ref|ZP_07060727.1| mobilizable transposon, int protein [Prevotella bryantii B14] gi|299775357|gb|EFI71953.1| mobilizable transposon, int protein [Prevotella bryantii B14] Length = 365 Score = 98.2 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 43/254 (16%), Positives = 93/254 (36%), Gaps = 28/254 (11%) Query: 96 ESYFDQIIRKSGDFDYRKITTKHIRSGVE-----------SRKHTPSSAIQFLTSMRVLF 144 +F++ + G +R I +K + +SA + + + Sbjct: 111 RLHFERFCK--GQCKFRDINASLCERFRLYLLRAKGLQHTKKKLSKNSASAYFNAFLSIV 168 Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGI-RPWTKEDMQQFKSF-WSEGSQPRLAFEFLLYS 202 +A R ++ + +E+ K + + +++Q S + + A F +Y+ Sbjct: 169 HFAYRDNILSEDYTTCIEKIKWNHDIPKEYLSSAEIKQLASTPYDDNPDVYRAGMFSIYT 228 Query: 203 GLRCSDSCRAGVQHLQNNI-----FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFI 257 GLR SD +++ ++ + +KT T+I + L +++L + F Sbjct: 229 GLRRSDILALRWENIHHDRGRKAYIRFRIKKTRTLIQLPLSLPAIRVLGDPKSEGKIF-- 286 Query: 258 NNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKT 315 + + +I +KA + K + H R A D G + + A G K Sbjct: 287 ----PMITESILTIHIPRWVSKARIRKHITFHCFRHTFAMQLLDKGVDIYTIAALLGHKQ 342 Query: 316 VDQAETYTKGADRI 329 V + Y K + + Sbjct: 343 VSSTQNYAKMSSKK 356 >gi|297588425|ref|ZP_06947068.1| tyrosine recombinase XerC [Finegoldia magna ATCC 53516] gi|297573798|gb|EFH92519.1| tyrosine recombinase XerC [Finegoldia magna ATCC 53516] Length = 326 Score = 98.2 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 33/203 (16%), Positives = 70/203 (34%), Gaps = 15/203 (7%) Query: 140 MRVLFKWAVRQEYVAI-NPCLSVERPKRKTEGIRPWTKED------MQQFKSFWSEGSQP 192 +R +K+ + + I NP ++ PK+ T ++ + + ++ Sbjct: 101 IRTFYKYLINIRKLDIINPAELLDSPKKNIRQPVYLTLDESLNLLKVILREKDEEIKARD 160 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI---ITVELPDGFMKLLAMTP 249 L G+R S+ + H++ N + + + D L + P Sbjct: 161 YCITVLFLNCGMRLSELSSINIDHIKTNTLRVIGKGNKERTVYLNDMCLDALDNYLKIRP 220 Query: 250 -IGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAG-ATA 304 I + FI+ + +M+ + G + S H +R +AT+ G Sbjct: 221 EIDNDALFISKKRNRMSNRAIQYRIEHYLKAGGFDTSIYSVHKLRHTAATLMYQYGNVDI 280 Query: 305 HELMATYGWKTVDQAETYTKGAD 327 L G ++V + YT + Sbjct: 281 KVLQEILGHESVSTTQIYTHVDN 303 >gi|320353544|ref|YP_004194883.1| integrase family protein [Desulfobulbus propionicus DSM 2032] gi|320122046|gb|ADW17592.1| integrase family protein [Desulfobulbus propionicus DSM 2032] Length = 311 Score = 97.8 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 46/269 (17%), Positives = 93/269 (34%), Gaps = 16/269 (5%) Query: 88 AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPSSAIQFLTSMRVLFK 145 N++ + ++IR + IT+K I + + R + PSS IQ L+ + +++ Sbjct: 44 KRNTQRLDQEIGGRLIRYFDGKSLQTITSKDIAAYRDYRLQQVGPSSVIQDLSFLSCMYR 103 Query: 146 WA-VRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA--FEFLLYS 202 A + +P + RP + T + + + +L LL++ Sbjct: 104 MARIEWGLDVNDPGAEIRRPSAPKNRLSLLTPKQIDTLLDYCCVSKSEKLYCYVLLLLHT 163 Query: 203 GLRCSDSCRAGVQH--LQNNIFSIKTQKTGTIITVELPDGFMKL---LAMTPIGKETFFI 257 +R S+ + + + KT V + K+ + + G+ F Sbjct: 164 AMRPSEGAGLRWDQVLIGQGMIDLTETKTD-PRRVPMTRTIRKMFERMRVAGEGENGFVF 222 Query: 258 NNDKQKM---NATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGW 313 + F F AG+ N + +G+R +A+ G + G Sbjct: 223 LPPGKGYRDQPHRYFRRSFDNACRYAGICNFTLYGLRHSAASYLIMNGVDIRTVAEIMGH 282 Query: 314 KTVDQAETYTKGADRIRL-GIKNSRRISS 341 + + Q YT D +L I + Sbjct: 283 RNISQTMKYTHFLDDHKLSAIGAIDNLGR 311 >gi|291282339|ref|YP_003499157.1| putative integrase [Escherichia coli O55:H7 str. CB9615] gi|312966817|ref|ZP_07781035.1| integrase [Escherichia coli 2362-75] gi|290762212|gb|ADD56173.1| putative integrase [Escherichia coli O55:H7 str. CB9615] gi|312288281|gb|EFR16183.1| integrase [Escherichia coli 2362-75] Length = 246 Score = 97.8 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 41/239 (17%), Positives = 79/239 (33%), Gaps = 21/239 (8%) Query: 108 DFDYRKITTKHIRSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK 165 D I+TK + + + + + SA +++ +F+ A+ + +VA NP + K Sbjct: 3 DKPLTDISTKEVAAMLNTYVAEGKAVSARVIRSTLVDVFRGAIAEGHVATNPVTTTRAAK 62 Query: 166 RKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK 225 + R E + + + RL+ + + +G R D CR + + I Sbjct: 63 SEVRRSRLTANEYVAIYHAAEHLPIWLRLSMDLAVVTGQRVGDLCRMKWSDINDGHLHIG 122 Query: 226 TQKTGTIITVELP-----------DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFK 274 KTG I + L D K ET + + ++ S + Sbjct: 123 QSKTGAKIAIPLALTIDALDISLVDTLQK--CREASSSETIIASTYHEPLSPATVSRYLT 180 Query: 275 AKATKAGV-----NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 +G+ + H +R + G K+ A Y +R Sbjct: 181 KARNASGISFDGDPPTFHELR-SLSARLYRNQIGYKFAQRLLGHKSDSMAAHYRDSRER 238 >gi|268609330|ref|ZP_06143057.1| site-specific tyrosine recombinase XerC [Ruminococcus flavefaciens FD-1] Length = 327 Score = 97.8 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 45/266 (16%), Positives = 93/266 (34%), Gaps = 21/266 (7%) Query: 103 IRKSGDFDYRKITTKHIRSGV----ESRKHTPSSAIQFLTSMRVLFKWAVRQEYV-AINP 157 I + D RKIT I + + + R + + + ++S+R FK+ + ++ +P Sbjct: 61 ISDFPEDDLRKITVSDIYNFIFYVSDERHNNDKARYRKISSLRSFFKYLEKAAHIIEKDP 120 Query: 158 CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQ 215 ++ P K + + + + R L G+R S+ + Sbjct: 121 TKDLDVPVPKKSLPKFLSLNESMRLLQASDNADSKRDYCIITLFLNCGIRLSELVGINIS 180 Query: 216 HLQNNIFSIKT-QKTGTIITVELPDGFMKLLAM---------TPIGKETFFINNDKQKMN 265 + ++ K + L + + L + FI+N ++++ Sbjct: 181 DIDFYENRMRVLGKGNKERMIYLNEACVDALNKYLIIRRDNQKAKAELALFISNQNKRIS 240 Query: 266 ATQFSIWFKAKATKAGVNK---SAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAET 321 + + T AG++ + H +R +AT+ G A L G +V E Sbjct: 241 KRRVQQIVENTLTAAGLDGKGITTHKLRHTAATLMYQYGDADVLTLKELLGHASVATTEI 300 Query: 322 YTKGADRIRLGIKNSRRISSVVDSDD 347 YT ++ S +S V D Sbjct: 301 YTHLSNENVRSAIESNPLSKVKSDDK 326 >gi|167041339|gb|ABZ06093.1| putative Phage integrase family protein [uncultured marine microorganism HF4000_005I08] Length = 422 Score = 97.8 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 56/360 (15%), Positives = 110/360 (30%), Gaps = 46/360 (12%) Query: 15 RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74 RHG + K R R+ + + ++ + KP T+ L Sbjct: 63 IGRHGSP-WTVEKARTRAKRIIGN------------IADGKDPAKDRDADKNKP-TVAEL 108 Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQI------IRKSGDFDYRKITT--KHIRSGVESR 126 Y + +S S + + + I + ++ G SR Sbjct: 109 CERYLEDYAKEHKKPSSLKSDQKNIENHVLPLLGREFVASVTFADIDRFKRAVKDGKSSR 168 Query: 127 KHTP------------SSAIQFLTSMRVLFKWAVRQEY--VAINPCLSVERPKRKTEGIR 172 + P A + L + +F A R + V NPC V+R + Sbjct: 169 ERKPEHQGGPNVTGGKGVANRCLALLSKMFNLAERWGWCSVGSNPCRHVDRYPENKRE-K 227 Query: 173 PWTKEDMQQFKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--FSIKT 226 + +++ SE A L+++G R + H+ + Sbjct: 228 FLSDKELAALAEVLNKSESENPYAVAAIRMLIFTGARLGEILHLEWAHVDMERAMLLLPD 287 Query: 227 QKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKS 285 KTG L + + I +K + + +AG+ + Sbjct: 288 PKTGQKAVFLSAPALDVLANLPHMKNNPHVICGEKDGSHLVNLQKPWGRIRKRAGLEDVR 347 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNS-RRISSVV 343 H +R A+++A G + + G Y AD ++ + +RI++V+ Sbjct: 348 LHDLRHSFASVAASGGLSLPMIGKLLGHTQAATTARYAHLAADPLKAANEAIGQRIAAVM 407 >gi|323495619|ref|ZP_08100692.1| hypothetical protein VISI1226_05828 [Vibrio sinaloensis DSM 21326] gi|323319351|gb|EGA72289.1| hypothetical protein VISI1226_05828 [Vibrio sinaloensis DSM 21326] Length = 442 Score = 97.8 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 54/334 (16%), Positives = 106/334 (31%), Gaps = 48/334 (14%) Query: 54 STPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK 113 E + ++ L+SE+ + + + S + Sbjct: 100 QPASMEPSSITSNVGRSVSVLLSEFVECKQLEGVKPKNIDLLSSRINNFFENQ-TVSPDS 158 Query: 114 ITTKHIRSGVES---RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK---RK 167 +T +H + ++S R + + +L + R + W + EY +NP +V K Sbjct: 159 VTPRHASAFLKSLYGRGLSAKTVRDYLAATRQFYSWMITMEYATVNPFENVRVKKDVRLP 218 Query: 168 TEGIRPWTKEDMQQFKSFWS----EGSQPRLAFE-----------FLLYSGLRCSDSCRA 212 +E R W++E++ + S + G+ LL++G R S+ C+ Sbjct: 219 SEQRRRWSREELVKLFSHDNFAGVIGTNDSTVNYQKKLEDYWIPYLLLFTGARVSEICQL 278 Query: 213 GVQHLQNNIFSI---------KTQKTGTII-TVELPDGFMKLL-------AMTPIGKETF 255 + +Q KT KT I + L + + + F Sbjct: 279 RTEDVQEREGVWCISVNEDEGKTVKTKASIRHIPLHKELLNMGFLSYVNHRYGARKDKLF 338 Query: 256 FINNDKQKMN-ATQFSIWFKAKATKAGVNK----SAHGVRKFSATISADAGATAHELMAT 310 I + M + QF F G + HG+R + G +E+ Sbjct: 339 DIRPYGKTMCWSEQFGKRFTKVLKAIGFTGAQRPTLHGLRHTFVDSAQAIGLPENEVCEI 398 Query: 311 YGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344 G Y + RL + + + +D Sbjct: 399 VGHAKQSMT--YGRYG--KRLSLMRLKSLIDEID 428 >gi|227888721|ref|ZP_04006526.1| bacteriophage integrase [Lactobacillus johnsonii ATCC 33200] gi|227850748|gb|EEJ60834.1| bacteriophage integrase [Lactobacillus johnsonii ATCC 33200] Length = 386 Score = 97.8 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 46/284 (16%), Positives = 95/284 (33%), Gaps = 42/284 (14%) Query: 100 DQIIRKSGDFDYRKITTKHIRSGVESR-KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPC 158 + I+ G+ KI+T + + P + + + +AV + + NP Sbjct: 103 NHILPVLGELYVEKISTFRCQKALNKWFSDLPKMYRKVYSLSSKVLDYAVNNDLIVKNPM 162 Query: 159 LSVERPKRKTEGIRP---WTKEDMQQFKSFWSEGSQPR--LAFEFLLYSGLRCSDSCRAG 213 V +PK + + ++KE++ ++ + PR L F L Y+G+R ++ Sbjct: 163 KRVIKPKMQKDKREFTNFYSKEELNKYLDACKQKKNPRVYLFFRLLAYTGMRKGEALALK 222 Query: 214 VQHLQNNIFSIKTQK-----TGTIITVELP---------------------------DGF 241 + +I+ K T + + P Sbjct: 223 WSDIDFENETIRINKTLSLGTHNSLVIGTPKTKASNRTIQVDEQTIYYLQEWRKRQRKEL 282 Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADA 300 K+ + F N + Q + W K A A + + HG R A++ +A Sbjct: 283 FKVGFNALTDDQLLFSNGNNQLIRPWLVQYWNKTIAKDARLKHITVHGFRHTHASLLFEA 342 Query: 301 GATAHELMATYGWKTVDQAE-TYTK--GADRIRLGIKNSRRISS 341 G ++ G + YT +++ + K +R + Sbjct: 343 GTPMQDVKERLGHSDITTTMNVYTHVTKSEKKKTAEKFARFMEG 386 >gi|283852866|ref|ZP_06370128.1| integrase family protein [Desulfovibrio sp. FW1012B] gi|283571776|gb|EFC19774.1| integrase family protein [Desulfovibrio sp. FW1012B] Length = 319 Score = 97.8 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 46/276 (16%), Positives = 89/276 (32%), Gaps = 30/276 (10%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDF--------DYRKITTKHIRSGVESRKHTPSSAIQF 136 + + ++ Q + + + R+ SS + Sbjct: 29 KGYSPATLAAYAEDLAQFEESLAGRGLTLAAPGAVTLEAARGFLAELHRRRVAKSSMGRK 88 Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-------- 188 L+++R LF + R++ V +P ++ PK + ++ + E Sbjct: 89 LSALRGLFTFLRRKKRVTGDPLAGLKNPKTDKRQPKALNVDEAVALVTPGPESPAADGSR 148 Query: 189 -GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG------ 240 + E L SGLR S++ V L + ++ K G L D Sbjct: 149 EACRDLALAELLYGSGLRVSEAMTLDVDDLDLSQGIVRVMGKGGKERLAPLSDAARVRLG 208 Query: 241 ---FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSAT 295 + + FF+ +++ Q + A A AG+ + H +R AT Sbjct: 209 EYARRRAEFAPAPREPAFFLGARGGRLDRRQAARIIDALARGAGLARHAHPHMLRHSFAT 268 Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 ++GA + G + + YT D RL Sbjct: 269 HLLESGADMRSVQELLGHARLSTTQRYTH-LDLARL 303 >gi|297569003|ref|YP_003690347.1| tyrosine recombinase XerC [Desulfurivibrio alkaliphilus AHT2] gi|296924918|gb|ADH85728.1| tyrosine recombinase XerC [Desulfurivibrio alkaliphilus AHT2] Length = 330 Score = 97.8 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 41/291 (14%), Positives = 92/291 (31%), Gaps = 51/291 (17%) Query: 85 GSLAVNSRISFESYFDQI----IRKSGDFDYRKITTKHIRSGVESR--KHTPSSAIQFLT 138 + ++ S+ D+ ++ + +R+ V S ++ SS + L+ Sbjct: 21 KGYSPHTVSSYRRDLDEFAALDRGAGPLERVDQLDARRVRAFVYSLHGRNRSSSVARKLS 80 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----GSQPRL 194 ++R F++ + +A +P +V PK + + +++ ++ R Sbjct: 81 ALRTFFRYLQKNGVIAHDPAAAVAAPKAEGYLPTVLSVDEVFSLLEMPGPADTYAARDRA 140 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVEL-----------PDGFM 242 E L +G+R ++ ++ L ++ + G V + Sbjct: 141 MLELLYSTGMRVAELAALNLEQLDLAEGMVRVRGKGNKERLVPIGTPACEAVQAYLPQRE 200 Query: 243 KLLAMTPIGKE---------------------------TFFINNDKQKMNATQFSIWFKA 275 LL +E +N ++ K Sbjct: 201 VLLRAAKREREEPQEEKPPAPAGGKRSRPARREAAQEQPLLLNARGGRLTTRSIERLVKL 260 Query: 276 KATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 A +AG+ S H +R AT + GA + G ++ + YT Sbjct: 261 YAERAGIAARVSPHALRHSFATHLLEMGADLRTVQELLGHASLSTTQRYTH 311 >gi|15827839|ref|NP_302102.1| site-specific tyrosine recombinase XerC [Mycobacterium leprae TN] gi|221230316|ref|YP_002503732.1| site-specific tyrosine recombinase XerC [Mycobacterium leprae Br4923] gi|18202762|sp|Q9CBU0|XERC_MYCLE RecName: Full=Tyrosine recombinase xerC gi|13093391|emb|CAC30551.1| integrase/recombinase [Mycobacterium leprae] gi|219933423|emb|CAR71695.1| integrase/recombinase [Mycobacterium leprae Br4923] Length = 297 Score = 97.8 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 37/273 (13%), Positives = 93/273 (34%), Gaps = 27/273 (9%) Query: 86 SLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGVESRKHTPSSA---IQFLTSM 140 + ++R ++ ++ +++ +RS + + ++ + ++++ Sbjct: 16 GRSEHTRRAYLGDLRSLLTHLEGRGSRLDQLSLPVLRSWLATAAGAGAARTTLARRISAV 75 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS--------QP 192 + WA + +A +P ++ P+ ++ Q + G+ + Sbjct: 76 KAFTAWAKWRGQLAADPAARLQVPRAYRTLPAVLRQDQALQIMAAAKSGAEQGDPLALRD 135 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT-----VELPDGFMKLLA- 246 RL E L +G+R S+ C + + ++ G V D L Sbjct: 136 RLIVEMLYATGIRVSELCGLDIDDVDTRHRLVRVLGKGNKQRTAPFGVPAADALRGWLDD 195 Query: 247 -----MTPIGKETFFINNDKQKMNATQFSIWFKA--KATKAGVNKSAHGVRKFSATISAD 299 +T + + ++++ Q + HG+R +AT + Sbjct: 196 GRPALVTVESGPALLLGSRGRRLDVRQARTVVHQTVAVVAGAPDMGPHGLRHSAATHLLE 255 Query: 300 AGATAHELMATYGWKTVDQAETYTKGA-DRIRL 331 GA + G ++ + YT A R+R+ Sbjct: 256 GGADLRVVQELLGHSSLATTQLYTHVAVSRLRV 288 >gi|298243765|ref|ZP_06967572.1| integrase family protein [Ktedonobacter racemifer DSM 44963] gi|297556819|gb|EFH90683.1| integrase family protein [Ktedonobacter racemifer DSM 44963] Length = 385 Score = 97.8 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 60/383 (15%), Positives = 112/383 (29%), Gaps = 68/383 (17%) Query: 19 GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW----L 74 G+ Y R G++ +AL K+ TL L Sbjct: 18 GRFAGYIRLEGGKKKYFYGSTRKEVQDKVRAALN------------EKERGTLATGPNPL 65 Query: 75 ISEYRKSAHWGS-------LAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR 126 + +Y W A ++ + + S II + G R +T +HI+ + Sbjct: 66 LKDYL--PEWLETVCKPPYRAPSTYLHYRSAMKKHIIPEIGHLKIRNLTPRHIQELYAKK 123 Query: 127 ---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 P + + A++ E V+ N V PK I P T+E + Sbjct: 124 IRDGAKPPTIKLMHEVLSGSLNSALQWEMVSKNVASQVTVPKGVQREIVPLTEEQARVLL 183 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-----------------NNIFSIKT 226 + G + + +GLR + + + Sbjct: 184 EI-ARGHRLEGMILLAVTTGLRRGEITALKWSDIDFDARLLFIKHTVSHVAFMGYVEKEP 242 Query: 227 QKTGTIITVELPDG----FMKLLAMTPIGKE-------------TFFINNDKQKMNATQF 269 + T+ LP+ + + E F++ + M++ Q Sbjct: 243 KTRAGKRTIHLPEAVIQTLQQHYSEQKAKAEEMGLSLSEWNPKGLVFLSKLRSYMHSPQT 302 Query: 270 SIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKG-- 325 F +AG+ K H +R +ATI G + G ++ Y+ Sbjct: 303 LKEFHQIVAQAGLPKMRFHDLRHSAATILLAKGVHPKVVQELLGHSSIAMTMNIYSHVMP 362 Query: 326 ADRIRLGIKNSRRISSVVDSDDP 348 + R + S + D+P Sbjct: 363 SMRKEVASIMDTIFSEEKEGDEP 385 >gi|295105592|emb|CBL03136.1| Site-specific recombinase XerD [Faecalibacterium prausnitzii SL3/3] Length = 398 Score = 97.8 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 38/239 (15%), Positives = 80/239 (33%), Gaps = 19/239 (7%) Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTKED----MQQ 181 + SS + L S+ + + V Q ++ +P ++ PK+ + T E ++ Sbjct: 101 GNKKSSTARRLASLHGFYDYLVNQVNRLSEDPTAAIRPPKQDKVLPKYLTAEQSISLLES 160 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG 240 ++ + L G+R ++ + + I+ K V L D Sbjct: 161 TQTQSDFPERDYCMVVLFLNCGMRLAELVGMDLGDIDLEQRQIRLFGKGHKERMVYLNDA 220 Query: 241 FMKLLAM-----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHG 288 ++ L + +P K F K++++ + AG+ S H Sbjct: 221 CVEALQLYLRKRNTMEGLSPKEKAVFITRMRKERISNRRVEQLISGAMKAAGLKGFSTHK 280 Query: 289 VRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSD 346 +R +AT+ G L G +V + YT + + V+ + Sbjct: 281 LRHTAATLMYQTGNVDILTLKQLLGHSSVGTTQIYTHLQEFQVRSAIEENPLGKVLPIN 339 >gi|289643920|ref|ZP_06476023.1| tyrosine recombinase XerD [Frankia symbiont of Datisca glomerata] gi|289506249|gb|EFD27245.1| tyrosine recombinase XerD [Frankia symbiont of Datisca glomerata] Length = 323 Score = 97.8 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 58/276 (21%), Positives = 93/276 (33%), Gaps = 35/276 (12%) Query: 90 NSRISFESYFDQII----RKSGDFDYRKITTKHIRSGVESRKHTPSSAI---QFLTSMRV 142 R Y + + R D D ++ + +H P +A + L S+R Sbjct: 29 AYRRDLRRYLEHLSLRGVRSLADVDESEVAEFAATLREGAGEHPPLAASSVARMLVSVRS 88 Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS------------EGS 190 L ++A R+ V + V P R T + + S EGS Sbjct: 89 LHRFAAREGEVTSDVSRPVRPPTPPRRLPRALTVDQVVAVLRAASTSAAGGPGGDPAEGS 148 Query: 191 QPRLA---FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLA 246 + A E L +G R S++ V L + S++ K G V L + LA Sbjct: 149 RQLRAVALLELLYGTGARISEAVGLDVDDLDLDAASVRLLGKGGRARVVPLGRYAGEALA 208 Query: 247 M----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSAT 295 + F++ +++ + A AGV S H +R AT Sbjct: 209 AYLVRARPVLASRRASPAVFLSRRGTRLSRQSAWTVLRTAAVAAGVEGVSPHVLRHSFAT 268 Query: 296 ISADAGATAHELMATYGWKTVDQAETYT-KGADRIR 330 D GA + G +V + YT DR+R Sbjct: 269 HLLDGGADVRVVQELLGHASVSTTQIYTLVTVDRLR 304 >gi|126654062|ref|ZP_01725888.1| site-specific tyrosine recombinase XerC [Bacillus sp. B14905] gi|126589442|gb|EAZ83589.1| site-specific tyrosine recombinase XerC [Bacillus sp. B14905] Length = 299 Score = 97.8 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 42/263 (15%), Positives = 87/263 (33%), Gaps = 23/263 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR---KHTPSSAIQFLT 138 + +V++ +ES + G D + H R V K +S + ++ Sbjct: 20 KNFSVHTVREYESDLLDFLAFLQGEGIHDLASVEYIHARLYVTKLYDEKRARASISRKIS 79 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRL 194 S+R F++ RQ S+ PK+++ + +E++ Q + + Sbjct: 80 SIRSFFRFLNRQYGFDDGAFRSLYHPKKESRLPNFFYEEELMQLFDANTGDDLKSLRNMA 139 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV---------ELPDGFMKLL 245 E L +G+R S+ V+ + + I+ G + + D + Sbjct: 140 ILELLYATGIRVSELTSIQVKDVDFHYSIIRVMGKGRKERIIPFGQFASLAMLDYIEQAR 199 Query: 246 AMT--PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAG 301 + F+N ++ KA ++ H +R AT + G Sbjct: 200 PRLMKKTNHQQLFVNMRGGELTPRGVRHVLNEMIDKASLHTKIYPHMLRHTFATHLLNNG 259 Query: 302 ATAHELMATYGWKTVDQAETYTK 324 A + G + + YT Sbjct: 260 ADLRTVQELLGHSHLSSTQVYTH 282 >gi|319744173|gb|EFV96543.1| phage integrase family integrase/recombinase [Streptococcus agalactiae ATCC 13813] Length = 328 Score = 97.8 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 34/279 (12%), Positives = 90/279 (32%), Gaps = 15/279 (5%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE----SRKHT 129 L+ + + + S ++ ++++ + D R+I+T +R+ + R+ + Sbjct: 53 LLHLFISAKRIEGCSEKSLKYYKMVIEKMVAEL-DKPIRQISTSDLRTYLANYQKERQSS 111 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 + F W ++Y+ +P + + K + E ++ + Sbjct: 112 KVTIDNMRRIFSSFFSWLEDEDYILKSPVRRIHKIKTDKVIKETLSDESLELLRDTCD-N 170 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG-----FMKL 244 + + L +G+R + R + + + G + D + Sbjct: 171 IRDLAMIDLLASTGMRVGELVRLNREDINFHERECLVFGKGNSERIVYFDARTKIHLINY 230 Query: 245 LAMTPIGKETFFINN--DKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAG 301 L F++ ++ + +A + K H R+ AT + D G Sbjct: 231 LDSRKDDSSALFVSLAYPYDRLMIGGVETRLREIGKRANLQKVHPHKFRRTLATRAIDKG 290 Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340 ++ G +D Y ++ + + + I Sbjct: 291 MPIEQVQHLLGHVKIDTTMHYA-MVNQANVKNSHRKYIG 328 >gi|237740506|ref|ZP_04570987.1| integrase/recombinase [Fusobacterium sp. 2_1_31] gi|229422523|gb|EEO37570.1| integrase/recombinase [Fusobacterium sp. 2_1_31] Length = 328 Score = 97.8 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 37/275 (13%), Positives = 87/275 (31%), Gaps = 42/275 (15%) Query: 88 AVNSRISFESYFDQIIRKS--GDFDY---------RKITTKHIRSGV----ESRKHTPSS 132 + + + + + G+ D+ + I + + + + E RK +S Sbjct: 33 SEKTVKDYMFHLKDFLHFVYEGENDFSISEVIPLMQDIEKEDVEAYIVHLFEDRKLKKTS 92 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW--TKEDMQQFKSFWSEGS 190 L++++ L+K NP ++ K + +D+++ + S Sbjct: 93 VNTILSALKSLYKELESNGL--KNPVKYIKLFKVNRNIENVLKVSIDDIRKIIGLYKIDS 150 Query: 191 QPR----LAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVELPDGFM 242 + + L Y+G+R + +H F + K+G + + + Sbjct: 151 EKKYRNITILYTLFYTGMRSKELLTLQFKHFLRREDEYFFKLVQTKSGKDVYKPIHKSLV 210 Query: 243 K-------------LLAMTPIGKETFFINN--DKQKMNATQFSIWFKAKATKAGVNKSAH 287 K L + + F + + ++ ++ + + S H Sbjct: 211 KKLEEYRSYLMNMYSLDSKDLDEHYIFATSVSNNSPLSYRSLNVIIQDMGKLIEKDISPH 270 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 +R AT + GA E+ G E Y Sbjct: 271 NIRHAIATELSLNGADILEIRDFLGHSDTKVTEVY 305 >gi|189460668|ref|ZP_03009453.1| hypothetical protein BACCOP_01310 [Bacteroides coprocola DSM 17136] gi|189432627|gb|EDV01612.1| hypothetical protein BACCOP_01310 [Bacteroides coprocola DSM 17136] Length = 296 Score = 97.8 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 46/267 (17%), Positives = 96/267 (35%), Gaps = 24/267 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD----FDYRKITTKHIRSG---VES 125 L + K + + + + +S+ ++ D+ + IR + Sbjct: 5 LKDSFLKYLQFEKNYSDKTIVSYGIDLEKFEEYFKTVDECLDFTVVDVDLIRGWVLSLME 64 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 +T +S + L+S+R +++ +RQ V+++P V PK+K + DM + Sbjct: 65 EGYTATSVNRKLSSLRSFYRYLLRQGVVSVDPLQKVVGPKKKKPLPVFVKEADMSRLLDE 124 Query: 186 WSEGS-----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPD 239 G+ + ++ E +G+R S+ + ++ IK T K + D Sbjct: 125 ADFGTSFEGVRDKVILEVFYETGVRLSELVGLTDADVDLSLKQIKVTGKRNKQRFIPFGD 184 Query: 240 GFMKLLAM--------TPIGKETFFINNDKQKMNATQFSIWFKA--KATKAGVNKSAHGV 289 L P G E FF+ + + + + K + KS H + Sbjct: 185 KLKSDLNAYLSVREERFPGGGEAFFLRGNGKPIYPGLVYLLVKRNLSKVVSLKKKSPHVL 244 Query: 290 RKFSATISADAGATAHELMATYGWKTV 316 R AT + A + G +++ Sbjct: 245 RHSFATSMLNNHAELGAVKELLGHESL 271 >gi|148379636|ref|YP_001254177.1| phage integrase [Clostridium botulinum A str. ATCC 3502] gi|237795099|ref|YP_002862651.1| site-specific recombinase, phage integrase family [Clostridium botulinum Ba4 str. 657] gi|148289120|emb|CAL83214.1| phage integrase [Clostridium botulinum A str. ATCC 3502] gi|229262802|gb|ACQ53835.1| site-specific recombinase, phage integrase family [Clostridium botulinum Ba4 str. 657] Length = 349 Score = 97.8 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 48/277 (17%), Positives = 98/277 (35%), Gaps = 25/277 (9%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSG---VESR 126 K L Y + + + V + E ++I+ D + IT +IR + S+ Sbjct: 58 FKELSDLYLEHSK-TRIRVTTFQVKEIIIKERILPYFKDMNVNNITPNNIRKWQNKLMSK 116 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV-ERPKRKTEGIRPWTKEDMQQFKSF 185 + + + +F +A++ + NP L K+ +EG++ WT E+ ++F Sbjct: 117 DYKQTYLKAVNKQLNAIFNFAIKYYNLNSNPALKAGPMGKKDSEGMQFWTLEEYKEFIK- 175 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT---------------- 229 + +LAFE L ++GLR + + I KT Sbjct: 176 CVDNPMCKLAFEILFWTGLRKGELEALTFSDIDTKNKIISITKTYTRINKKDIINPPKTP 235 Query: 230 GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHG 288 + V + D + + F N + + K+ V + H Sbjct: 236 KSKRKVSISDFLCEDIENYKKKLYNFDKNERIFPVGRHILKNSMRDACEKSSVKEIRIHD 295 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324 +R A++ + G + + G + + +TY+ Sbjct: 296 LRHSHASLLIELGFSPLLIKERLGHENIQTTLDTYSH 332 >gi|295134062|ref|YP_003584738.1| transposase [Zunongwangia profunda SM-A87] gi|294982077|gb|ADF52542.1| putative transposase [Zunongwangia profunda SM-A87] Length = 410 Score = 97.8 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 49/287 (17%), Positives = 102/287 (35%), Gaps = 28/287 (9%) Query: 77 EYRKSAHWGSLAVNSRISFE---SYFDQ-IIRKSGDFDYRKI------------TTKHIR 120 EY S++ ++ ++ Y + + K D+R I K + Sbjct: 115 EYHNEISRHSISAHTLRHYKVTQGYLQKFLRAKFNLEDFRLIYLNFSFIKDFEFFIKSYQ 174 Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 RK ++A++ L +R + A E++ +P + + K T+E++Q Sbjct: 175 PTDHQRKMGHNTAMKHLQRLRKMVTMAYHHEWIPKDPFVRFKSSYVKKR-REFLTREELQ 233 Query: 181 QFKSFWSEGSQ---PRLAFEFLLYSGLRCSDSCRAGVQHLQNN-----IFSIKTQKTGTI 232 + F S ++ + F F Y+GL D + + ++ + + QKT T Sbjct: 234 SIEDFQSSINRLNIVKDIFLFSCYTGLSYIDITKLTMDNIGMDFDGNQWIETERQKTKTA 293 Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290 + + L + +L +T + + + + + K A G+ K + H R Sbjct: 294 LKIPLLNQARDILKRYQDHPKTVHSKTLLPRYSNQKLNSYLKEIADFCGIKKHLTFHIAR 353 Query: 291 KFSAT-ISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336 AT I+ G + G + + Y + D+ Sbjct: 354 HTFATTITLTNGVPIETVSKLLGHTKLATTQIYARVVDKKVKDDMAM 400 >gi|238923573|ref|YP_002937089.1| putative phage integrase/recombinase [Eubacterium rectale ATCC 33656] gi|238925721|ref|YP_002939238.1| putative phage integrase/recombinase [Eubacterium rectale ATCC 33656] gi|238875248|gb|ACR74955.1| putative phage integrase/recombinase [Eubacterium rectale ATCC 33656] gi|238877397|gb|ACR77104.1| putative phage integrase/recombinase [Eubacterium rectale ATCC 33656] gi|291524021|emb|CBK89608.1| Site-specific recombinase XerD [Eubacterium rectale DSM 17629] Length = 282 Score = 97.8 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 42/274 (15%), Positives = 100/274 (36%), Gaps = 18/274 (6%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK---H 128 K + R A +L + + S +R G + +T + S + +++ Sbjct: 3 KDIFESIRNEAEKRNLRERTIQLYCSDVSYFLRWIG-KNVSDLTLEDAESFLTAKRLEGR 61 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 +P + + ++++ L+K ++ + +V KR+ +++++ Sbjct: 62 SPETHNHYRSAIKFLYKKVLKTVWDDD----TVPAMKRERNLPAVLSRDEINAIIDATP- 116 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL------PDGFM 242 + + + SGLR S+ + +I ++T I D Sbjct: 117 NLKHKAIIATMYSSGLRVSEVVHLHYDDISRTNMTIHVRETKGRIDRYTILSQKNLDLLT 176 Query: 243 KLLAMTPIGKETFFINND-KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299 + K+ F ++ ++ T + +FK A AG+ + S+H R A+ + Sbjct: 177 EYWYKCGRPKDILFPSSWTGGYLDITGVNQFFKKSAKLAGITRHVSSHACRHSFASHLFE 236 Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 +G + + G + Y +++ LGI Sbjct: 237 SGTDIKYIQSLLGHVDPRSTDVYLHVSNKTLLGI 270 >gi|227891999|ref|ZP_04009804.1| phage integrase [Lactobacillus salivarius ATCC 11741] gi|227866203|gb|EEJ73624.1| phage integrase [Lactobacillus salivarius ATCC 11741] Length = 370 Score = 97.8 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 55/351 (15%), Positives = 120/351 (34%), Gaps = 43/351 (12%) Query: 13 KERTRHGKIIYYFRK------GHGRRI-RLPYPHESTFIPAYM----SALTGSTPKREYI 61 + G +Y FR G + + R + ++ AY +A G + + Sbjct: 6 AYTNKKGDKLYKFRIYVGFVDGKSKYVNRAGFKTKTEVKKAYQEVKFAAYQGEYRQESNL 65 Query: 62 NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121 + + T L + + + + + + + + IT ++ Sbjct: 66 DVSLR---TFGDLYDFWFEQYKNTVRGSSYYVIKKGLDKNVYPYLKNKQLKNITLIDCQN 122 Query: 122 GVESR-KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT--EGIRPWTKED 178 K P + + + + ++AV + + NP +V +P+ K ++KE+ Sbjct: 123 LFNKLLKTNPGNYVILSIYTKKILQYAVTLKLIPENPMNNVIKPREKKTYGSNNYYSKEE 182 Query: 179 MQQFKSFWS-EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ----------------NNI 221 ++ F ++ E + F L YSG+R + V + ++ Sbjct: 183 LKTFLAYSKKEKFHVYVLFRLLAYSGMRIGELLALKVADIDFNTSQISITKTISSDADSR 242 Query: 222 FSIKTQKT--GTIITVELPDGFMKLLAMTPIGK--ETFFINNDK--QKMNATQFSIWFKA 275 F + KT G I + + + L++ K + F + + ++W Sbjct: 243 FELHKPKTTTGNRI-ISVDPDTINLVSTLIKDKKKDDFIFRFYGCSKPYSPRTVALWKNK 301 Query: 276 KATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324 KA + K S HG R ++ ++G ++ G V+ YT Sbjct: 302 IIKKANLRKISLHGFRHTYTSLLFESGVNIKKIQKQLGHSKVEMTLNVYTH 352 >gi|221640000|ref|YP_002526262.1| site-specific tyrosine recombinase XerC [Rhodobacter sphaeroides KD131] gi|221160781|gb|ACM01761.1| Phage integrase family protein [Rhodobacter sphaeroides KD131] Length = 306 Score = 97.8 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 45/249 (18%), Positives = 82/249 (32%), Gaps = 19/249 (7%) Query: 101 QIIRKSGDFDYRKITTKHIRSGVE---SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINP 157 + G + +R+ + +R S + L+++R W +E V Sbjct: 48 HLGEGYGLKRLASVPHADLRAWMAHERARGLGARSLARSLSAVRQFTGWLAEREGVDATA 107 Query: 158 CLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-------GSQPRLAFEFLLYSGLRCSDSC 210 LS PK + + RP ++ D + S +E ++ L GLR S++ Sbjct: 108 VLSARGPKFRRKLPRPLSEADAKALLSTVAEDAAEDWIRARDLAVVTLLYGCGLRISEAL 167 Query: 211 RA-GVQHLQNNIFSIKTQKTGTIITVELPDGFMKL-----LAMTPIGKETFFINNDKQKM 264 G H + I + + LP + L +G F + Sbjct: 168 GLPGTAHPLPEVLRITGKGDKERLVPSLPVARAAVARYAALCPFDLGSGVLFRGARGGPL 227 Query: 265 NATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 N + + G+ + H +R AT +AG + G ++ + Y Sbjct: 228 NPRLVARTMERARATLGLPPTATPHALRHSFATHLLNAGGDLRSIQELLGHASLSTTQVY 287 Query: 323 TKGADRIRL 331 T D RL Sbjct: 288 T-AVDGARL 295 >gi|322836802|ref|YP_004210716.1| integrase [Acidobacterium sp. MP5ACTX9] gi|321165889|gb|ADW71589.1| integrase family protein [Acidobacterium sp. MP5ACTX9] Length = 317 Score = 97.8 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 56/295 (18%), Positives = 106/295 (35%), Gaps = 28/295 (9%) Query: 80 KSAHWGSL-AVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKHTPSSAIQ 135 KS+ SL + S+ ++ + + I + + R +ESR+ P++ Sbjct: 25 KSSVLQSLGSAASKRTYGAAIEDFITWYCSEPRLAFGRTVVLRYRYELESRRLAPATINL 84 Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPK-RKTEGIRP---WTKEDMQQFKSFWSEGS- 190 L ++R L A + + + R K K G+R T + ++ + + S Sbjct: 85 GLAAVRRLAYEASDNGLLNPDLAAGIRRVKGVKRLGMRLGNWLTADQGKKLLAVPASNST 144 Query: 191 ---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT---QKTGTIITVELPDG---- 240 + LL GLR ++ + H Q + K G I TV +P Sbjct: 145 RDKRDYAVLALLLGCGLRRAELTSLTLGHQQRDGHWAIVNLFGKCGHIRTVPVPSWVKVA 204 Query: 241 FMKLLAMTPIGKETFFI------NNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFS 293 + + I + F +++ + +A AG+ K + H +R+ Sbjct: 205 LDRWVIAASISEGAIFRRVSRTGTVWGPRISEKLVWWIVRRRAETAGIEKLAPHDLRRTC 264 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348 A + AG ++ G ++ + E Y R RL + +I DS P Sbjct: 265 ARLCHAAGGELEQIQFLLGHRSAETTERYLGS--RQRLASAVNDKIGLEPDSGGP 317 >gi|294644652|ref|ZP_06722402.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CC 2a] gi|294809546|ref|ZP_06768241.1| site-specific recombinase, phage integrase family [Bacteroides xylanisolvens SD CC 1b] gi|292639986|gb|EFF58254.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CC 2a] gi|294443246|gb|EFG12018.1| site-specific recombinase, phage integrase family [Bacteroides xylanisolvens SD CC 1b] Length = 356 Score = 97.8 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 37/228 (16%), Positives = 80/228 (35%), Gaps = 10/228 (4%) Query: 110 DYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169 D + + G + + ++A + + ++ K A EY+ ++ V+ + Sbjct: 118 DIKMFLLRAPMGGNKKGTISQNTASTYFSILKAGLKQAFIDEYLTVDISAKVKGITNIEK 177 Query: 170 GIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSI- 224 T ++Q + + AF F + +GLR SD + + + ++ Sbjct: 178 PRVALTMNEVQMLVDTPCKDDVLKRAFLFSILTGLRHSDIQTLKWKQIQQTSKGTWQAVV 237 Query: 225 KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284 QKT + ++L + P E A+ S K +G+ K Sbjct: 238 IQQKTKRPDYKPVIQQALQLCGIRPDDDEALVFEGLTD---ASWISRPLKVWIEASGIKK 294 Query: 285 --SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 + H R A++ + G + + + G V + YT + + Sbjct: 295 HITFHCGRHSYASLLLENGVDIYTIKSLMGHTNVKTTQIYTHIVNEQK 342 >gi|226324982|ref|ZP_03800500.1| hypothetical protein COPCOM_02774 [Coprococcus comes ATCC 27758] gi|225206330|gb|EEG88684.1| hypothetical protein COPCOM_02774 [Coprococcus comes ATCC 27758] Length = 358 Score = 97.8 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 55/335 (16%), Positives = 116/335 (34%), Gaps = 46/335 (13%) Query: 41 STFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISE---YR----KSAHWGSLAVNSRI 93 F Y A+ +T + I+ ++LI E Y+ K L + Sbjct: 28 PDFARDYFRAIEPTTSPKTRISYAYDIRLFFQFLIEENPVYKHHSIKDFQVQDLEAIQPV 87 Query: 94 SFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYV 153 E Y + + +D + TK + S + ++++R + + +++ + Sbjct: 88 DIEEYLEYLK----VYDTTDVHTKETKQVTNSERGLFRK----MSALRSFYNYFFKRQII 139 Query: 154 AINPCLSVERPKRKTEGIRPWTKEDMQQFKSF--------------WSEGSQPR--LAFE 197 NP L V+ PK + I +++ + + + ++ R Sbjct: 140 QKNPTLFVDMPKLHDKAIIRLDTDEVAKLLDYVESCGSKLTGQALSYYNKTKERDIAIIT 199 Query: 198 FLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLLA---------M 247 LL +G+R S+ + + NN + T+K G+ + V + K L + Sbjct: 200 LLLGTGIRVSELVGLDLSDVDFNNNGVMVTRKGGSQMVVYFGEEVEKALRNYLETYRKAV 259 Query: 248 TPIGK--ETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATA 304 TP+ F++ K+++ K A++ + + H +R T Sbjct: 260 TPLAGYENALFLSTQKRRIGVQAVENMVKKYASQITNKRITPHKLRSTYGTALYKETGDI 319 Query: 305 HELMATYGWKTVDQA-ETYTK-GADRIRLGIKNSR 337 + + G K V+ + Y DR R + Sbjct: 320 YLVADVLGHKDVNTTKKHYAAIDEDRRRSAANVVK 354 >gi|194447018|ref|YP_002039152.1| shufflon-specific DNA recombinase [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194447281|ref|YP_002043943.1| shufflon-specific DNA recombinase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194358462|gb|ACF56906.1| shufflon-specific DNA recombinase [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194405585|gb|ACF65806.1| shufflon-specific DNA recombinase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] Length = 395 Score = 97.8 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 44/281 (15%), Positives = 91/281 (32%), Gaps = 25/281 (8%) Query: 61 INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI------IRKSGDFDYRKI 114 + SPR + +L + +Y K+ + + + + D Sbjct: 12 MPSPRIRKMSLSRALDKYLKTVSVHKKGHQQEFYRSNVIKRYPIALRNMDEITTVDIATY 71 Query: 115 TTKHIRSGVESRKHTPSSAIQF---LTSMRVLFKWA-VRQEYVAINPCLSVERPKRKTEG 170 + + + R P + L + LF A V NP V +PK + Sbjct: 72 RDVRL-AEINPRTGKPITGNTVRLELALLSSLFNIARVEWGTCRTNPVELVRKPKVSSGR 130 Query: 171 IRPWTKEDMQQFKSFWSE-GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQ 227 R T + ++ ++ E + F L + +R + +H+ + + Sbjct: 131 DRRLTSSEERRLSRYFREKNLMLYVIFHLALETAMRQGEILALRWEHIDLRHGVAHLPET 190 Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM--NATQFSIWFKAKATKAGV-NK 284 K G V L L M P +N A+ F ++ + + + Sbjct: 191 KNGHSRDVPLSRRARNFLQMMP-------VNLHGNVFDYTASGFKNAWRIATQRLRIEDL 243 Query: 285 SAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTK 324 H +R + + + G E+ A G ++++ + YT Sbjct: 244 HFHDLRHEAISRFFELGSLNVMEIAAISGHRSMNMLKRYTH 284 >gi|283853709|ref|ZP_06370938.1| integrase family protein [Desulfovibrio sp. FW1012B] gi|283570887|gb|EFC18918.1| integrase family protein [Desulfovibrio sp. FW1012B] Length = 339 Score = 97.8 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 49/319 (15%), Positives = 100/319 (31%), Gaps = 17/319 (5%) Query: 17 RHGKIIYYFR-KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75 + G + + R + G + + K +++++ + TL + Sbjct: 6 KRGNLQWEARIRKRGYPATCKTFDTKAEAEQWAKGVETEMSKGQFVSTKEAESYTLSECL 65 Query: 76 SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQ 135 Y++ + + R R I +K I +R+ SA Sbjct: 66 DRYKE--EYLPRLKDPRREISRANCLQSRAIAHRIMSTIRSKDIADYRRAREKEGISANT 123 Query: 136 F---LTSMRVLFKWAV-RQEYVA-INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 L + LF +A + NP +PK R + ++ + Sbjct: 124 IRLDLALLSRLFNFAKSDWGMESLTNPVQLAAKPKLPPGRERRLESGEEEKLFEAIGDDF 183 Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMT 248 + +F L + +R + + + + N ++ K GT TV L +++L Sbjct: 184 EFCAIIKFALETAMRRGEIVKLAWEDIDLRNKSVLLRDTKNGTCRTVPLSRKAIEVLQGL 243 Query: 249 PIG-KETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADA-GATAH 305 P F ++ S AG+ N H +R + + + Sbjct: 244 PRHISGRVFP----GHLHPDTLSSKMGKACQLAGLANLHFHDLRHEATSRFFEHTDLDVM 299 Query: 306 ELMATYGWKTVDQAETYTK 324 E+ A G K++ YT Sbjct: 300 EIKAITGHKSLQMLARYTH 318 >gi|317405722|gb|EFV86018.1| phage integrase family Site-specific recombinase [Achromobacter xylosoxidans C54] Length = 375 Score = 97.8 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 53/314 (16%), Positives = 108/314 (34%), Gaps = 32/314 (10%) Query: 60 YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119 YI + T++ ++ Y K + +++ IIR G + + + + Sbjct: 50 YIQRAPAERMTVEAALTRYLKEVT-PTKRASTQAGEHKKAQVIIRHLGKYSLAALNAEIV 108 Query: 120 RSGVESR---------KHTPSSAIQF---LTSMRVLFKWAVRQEY---VAINPCLSVERP 164 + R K P S L + LF A++ E+ + NP ++ RP Sbjct: 109 AQFRDMRLAGDPDKNGKLRPRSNNTVRLELALLGHLFTVAIK-EWGIGLPFNPVSNIRRP 167 Query: 165 KRKTEGIRPWTKEDMQQFKSFWSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQNNIF 222 + R T E+ + + S P + +G+R S+ ++ + Sbjct: 168 APGSGRNRRLTPEEQNRLLQAVDKHSNPMFGWIVRIAVQTGMRLSEIATLRIRQVDIERR 227 Query: 223 SIKTQ--KTGTIITVELPDGFMKLLAMT------PIGKETFFINNDKQK--MNATQFSIW 272 ++ + K + TV L ++ P E F + F Sbjct: 228 VVRLEHTKNSSPRTVPLTTEATRVFTEALANPLRPAETELVFFGEPGRDGIRRPYLFDKA 287 Query: 273 FKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 + AG+ + H +R + + +AG + E+ A G K++ + YT R Sbjct: 288 WTDAKRAAGLEDFRFHDLRHEAVSRFVEAGLSDQEVSAISGHKSMQMLKRYTHL--RAED 345 Query: 332 GIKNSRRISSVVDS 345 ++ R++ S Sbjct: 346 LVQKLDRLARRAPS 359 >gi|218263866|ref|ZP_03477835.1| hypothetical protein PRABACTJOHN_03525 [Parabacteroides johnsonii DSM 18315] gi|218222465|gb|EEC95115.1| hypothetical protein PRABACTJOHN_03525 [Parabacteroides johnsonii DSM 18315] Length = 354 Score = 97.8 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 45/290 (15%), Positives = 95/290 (32%), Gaps = 35/290 (12%) Query: 76 SEYRKSAHWGSLAVNSRISFESYFDQIIRK--------SGDFDYRKITTK---------- 117 +Y+ A + R + + G + +I Sbjct: 70 DKYKLKADFLEY---YRKQLRKHDQKWEFVYLHFSNFVHGKCTFEEIDIDLCNKFREYLL 126 Query: 118 HIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177 + + + T +SA + ++ R K R + N +E+ + + + E Sbjct: 127 SAKKLRRNGRITRNSASGYWSTFRGFLKILYRNGMIKTNVNDFLEKIETEDVMKEALSVE 186 Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL-----QNNIFSIKTQKTGTI 232 ++ + + + A F + LR SD + + I TQK Sbjct: 187 ELYKLAETPCKKPILKTASLFSCMTSLRISDILSLCWEDIVDYSAGGKCVHIITQKNKAE 246 Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290 + + + + L+ K F + + + I K AG+ K + H R Sbjct: 247 DIIPISEEALGLIGYNSEKKGFVF-----KGLMRSWTQIPMKEWIRSAGITKNITFHSYR 301 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340 + AT+ A AG + + K++ + Y K D + + S++I+ Sbjct: 302 RTFATLQAAAGTDIRTIQSIMAHKSITTTQRYIKVVDANKR--EASKKIT 349 >gi|330504101|ref|YP_004380970.1| phage integrase family protein [Pseudomonas mendocina NK-01] gi|328918387|gb|AEB59218.1| phage integrase family protein [Pseudomonas mendocina NK-01] Length = 339 Score = 97.8 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 42/317 (13%), Positives = 94/317 (29%), Gaps = 22/317 (6%) Query: 19 GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEY 78 G+ GRR R + + K L LI + Sbjct: 9 GRWKVDVEPIKGRRFR-KTFKTKGEAQRFEATCRAKVINAPEWAPKPKDRRKLSELIDRW 67 Query: 79 RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKI---TTKHIRSGVESRKHTPSSAIQ 135 + H +L+ + D + ++ G+ K+ R+ P + Sbjct: 68 -ATLHAHTLSDG--EARRRLLDTMAKELGNPVAIKMTGNEYAEYRTQAIKAGANPKTLNN 124 Query: 136 FLTSMRVLFKWAVRQEYVA-INPCLSVERPKRKTEGIRPWTKEDMQQFKS---FWSEGSQ 191 L +R +F + + NP V + + + + T ++ + + Sbjct: 125 RLGYLRSVFNVLHQLGEIDYANPLARVRPLRLQEKELAYLTDSQIETLFATIHRYCRTPH 184 Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIG 251 + L +G R ++ ++N + + K + ++ + + + Sbjct: 185 VAMVAAICLATGARWGEAQALTPDRVRNQLVTFVNTKGKRVRSIPIALELEQQIHRHFKQ 244 Query: 252 KETF--FINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMA 309 F +N+ + + ++ AG +S+H +R A+ G L Sbjct: 245 HGQFSNCLNSFDKALGESRLP-------VPAG--QSSHVLRHTFASHFVMNGGNILTLQK 295 Query: 310 TYGWKTVDQAETYTKGA 326 G T+ Y A Sbjct: 296 ILGHTTLAMTMRYAHLA 312 >gi|299136231|ref|ZP_07029415.1| integrase family protein [Acidobacterium sp. MP5ACTX8] gi|298602355|gb|EFI58509.1| integrase family protein [Acidobacterium sp. MP5ACTX8] Length = 396 Score = 97.8 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 53/317 (16%), Positives = 102/317 (32%), Gaps = 34/317 (10%) Query: 51 LTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD 110 L + + PR K + I +R L + +F+ +++ + Sbjct: 57 LEDESDPNKPEARPRAK---IVDAIQTFRDDEDSRRLTEGTLKKSRYFFETQLKEWAKNE 113 Query: 111 YRKITTKHIRSGVESRKHTPSSAIQFLTS----MRVLFKWAVRQEYVAINPCLSVERPKR 166 + + + + ++A Q + + + VR +++ NP + ++R K Sbjct: 114 GIVYLDQLTPAVLTKFRSGWTNAAQTMQRKHERLIAFLWFCVRMDWITKNPAILLKRVKA 173 Query: 167 KTEGIRPWTKEDMQQFKS-----------FWSEGSQPRLAFEFLL--YSGLRCSDSCRAG 213 + + K++ + E + RL L+ +SGL D+ Sbjct: 174 EPTPTDYFPKDEFKALVDGTYAYGDWRGGHDFEHRRDRLRALILMMRWSGLAIKDAVTLE 233 Query: 214 VQHL-QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFI-NNDKQKMNAT---- 267 L + + KTG + V LP LL P +F + + A Sbjct: 234 RTRLSDDGNLFLYRAKTGVPVYVPLPPEVHTLLRSLPNSNPHYFFWSGNGDPETAKRGWV 293 Query: 268 -QFSIWFKAKATK--AGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-T 321 ++ FK A K G +H R A AG ++ G +V E Sbjct: 294 RSLALLFKNVALKSPDGTLKRCHSHMFRDTFAVELLLAGVPIDQVSLLLGHSSVKVTEKH 353 Query: 322 YT--KGADRIRLGIKNS 336 Y A + +L Sbjct: 354 YAPFVKARQAQLAQSAR 370 >gi|227484989|ref|ZP_03915305.1| possible tyrosine recombinase XerC [Anaerococcus lactolyticus ATCC 51172] gi|227236986|gb|EEI87001.1| possible tyrosine recombinase XerC [Anaerococcus lactolyticus ATCC 51172] Length = 329 Score = 97.8 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 42/259 (16%), Positives = 91/259 (35%), Gaps = 27/259 (10%) Query: 92 RISFESYFDQ--IIRKSGDFDYRKITTKHIRSGV----ESRKHTPSSAIQFLTSMRVLFK 145 + +E+ FD I + + KIT + + + + + ++ + +++++ +K Sbjct: 52 KKDYENDFDYKKINFFVDNIFFEKITIQDFYAFLSYLDNDKNDSATTRSRKISAIKSFYK 111 Query: 146 WAV-RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG------SQPRLAFEF 198 + E + N + PK T + ++ S+ ++ Sbjct: 112 YMYSEIEVINTNIADKLTNPKISQRQPVYLTLSETERLIETISKEKNTFLKARDLAIVFT 171 Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKE----- 253 L +G+R S+ + + + F+I K TV L L+ + + Sbjct: 172 FLTTGMRLSELISIDLSDVNKDSFNII-GKGNKERTVYLTKNCQDLINNYIVIRSEYLKD 230 Query: 254 ----TFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAG-ATAH 305 FI+ K +++ + KAG + S H +R +AT+ G Sbjct: 231 DTVNALFISTRKNRISNRAVQSTIEKYLAKAGFDTSVYSTHKLRHTAATLMYKYGNVDIR 290 Query: 306 ELMATYGWKTVDQAETYTK 324 L G +V + YT Sbjct: 291 ALKDILGHASVSTTQIYTH 309 >gi|189402613|ref|ZP_03006783.1| shufflon-specific DNA recombinase [Escherichia coli O157:H7 str. EC4401] gi|189403473|ref|ZP_02795670.2| shufflon-specific DNA recombinase [Escherichia coli O157:H7 str. EC4486] gi|189354639|gb|EDU73058.1| shufflon-specific DNA recombinase [Escherichia coli O157:H7 str. EC4401] gi|189360455|gb|EDU78874.1| shufflon-specific DNA recombinase [Escherichia coli O157:H7 str. EC4486] Length = 396 Score = 97.8 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 44/281 (15%), Positives = 91/281 (32%), Gaps = 25/281 (8%) Query: 61 INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI------IRKSGDFDYRKI 114 + SPR + +L + +Y K+ + + + + D Sbjct: 13 MPSPRIRKMSLSRALDKYLKTVSVHKKGHQQEFYRSNVIKRYPIALRNMDEITTVDIATY 72 Query: 115 TTKHIRSGVESRKHTPSSAIQF---LTSMRVLFKWA-VRQEYVAINPCLSVERPKRKTEG 170 + + + R P + L + LF A V NP V +PK + Sbjct: 73 RDVRL-AEINPRTGKPITGNTVRLELALLSSLFNIARVEWGTCRTNPVELVRKPKVSSGR 131 Query: 171 IRPWTKEDMQQFKSFWSE-GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQ 227 R T + ++ ++ E + F L + +R + +H+ + + Sbjct: 132 DRRLTSSEERRLSRYFREKNLMLYVIFHLALETAMRQGEILALRWEHIDLRHGVAHLPET 191 Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM--NATQFSIWFKAKATKAGV-NK 284 K G V L L M P +N A+ F ++ + + + Sbjct: 192 KNGHSRDVPLSRRARNFLQMMP-------VNLHGNVFDYTASGFKNAWRIATQRLRIEDL 244 Query: 285 SAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTK 324 H +R + + + G E+ A G ++++ + YT Sbjct: 245 HFHDLRHEAISRFFELGSLNVMEIAAISGHRSMNMLKRYTH 285 >gi|325680339|ref|ZP_08159898.1| site-specific recombinase, phage integrase family [Ruminococcus albus 8] gi|324107968|gb|EGC02225.1| site-specific recombinase, phage integrase family [Ruminococcus albus 8] Length = 327 Score = 97.8 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 34/276 (12%), Positives = 89/276 (32%), Gaps = 14/276 (5%) Query: 60 YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119 ++ + + + ++ + S + S ++ ++ G + I T + Sbjct: 38 AVSCDKTEENSNDKIVGSFISSKRIEGCSEKSLKYYQKTITNMLVAVG-KQVKHIDTDDL 96 Query: 120 RSGV----ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175 R + E + + + F W + Y+ +P + + K + +T Sbjct: 97 RKYLTSYQEDNNSSRVTIDNIRRILSSFFSWLEEENYIMKSPVRRIHKIKTASTIKDTYT 156 Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235 E ++Q + ++ + + L +G+R + + G + Sbjct: 157 DEALEQMRDDCTD-LRDLALIDMLASTGMRVGELVLLNRSDIDFEERECVVLGKGNKERI 215 Query: 236 ELPDG-----FMKLLAMTPIGKETFFIN--NDKQKMNATQFSIWFKAKATKAGVNKS-AH 287 D + L E F++ +++ + + + + K+ H Sbjct: 216 VYFDARTKLHLKQYLDSRTDDNEALFVSLKAPHKRLKIGGVEVRIRKIGKRLNIQKAHPH 275 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 R+ AT++ D G +L G + +D Y Sbjct: 276 KFRRTLATMAIDKGMPIEQLQQLLGHRRIDTTLQYA 311 >gi|260889945|ref|ZP_05901208.1| DNA integration/recombination/invertion protein [Leptotrichia hofstadii F0254] gi|260860551|gb|EEX75051.1| DNA integration/recombination/invertion protein [Leptotrichia hofstadii F0254] Length = 342 Score = 97.8 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 45/266 (16%), Positives = 108/266 (40%), Gaps = 11/266 (4%) Query: 67 KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126 K TLK ++ + ++ G + +S+ S++ +++ + + + + I T +++ + S Sbjct: 66 KDITLKEVMDRFMRNKK-GLVEKSSQKSYKVWYNYL-KPLCNKRMKDIRTLELQNFISSL 123 Query: 127 KHTPSSAIQFLTS-MRVLFKWAVRQEYVAINPCLSVERPKRKTE-GIRPWTKEDMQQFKS 184 H + ++ + S +R+LFK A+ + + + ++ P+ K + + +T+E++ Sbjct: 124 NHLSTGTLKNIKSFIRMLFKDAMEMDIIVKDYSEFIKLPRHKPKIERKVFTEEEIALLWE 183 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-KT--GTIITVELPDG- 240 +E + L+Y+G+R ++ + ++ I KT G + + Sbjct: 184 NINELEYADVIL-ILIYTGMRINELLKLQKINVDLEQNIITGGSKTEAGKNRIIPIHPKI 242 Query: 241 FMKLLAMTPIGKETFFINNDKQKMN-ATQFSIW-FKAKATKAGVNKSAHGVRKFSATISA 298 ++ E N K F I F + G+ + H R AT+ + Sbjct: 243 LPLVIKRMENKTEYLIPNRRKSNYYEYNNFRIKEFMNIMKQLGMEHTIHDTRHTFATMIS 302 Query: 299 DAGATAHELMATYGWKTVDQAETYTK 324 D + G ++ + YT Sbjct: 303 DVSDNETAITGIIGHTNINMTKRYTH 328 >gi|254452011|ref|ZP_05065448.1| integrase [Octadecabacter antarcticus 238] gi|198266417|gb|EDY90687.1| integrase [Octadecabacter antarcticus 238] Length = 202 Score = 97.8 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 33/164 (20%), Positives = 56/164 (34%), Gaps = 17/164 (10%) Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN--IFSIKTQKTGTIITVE 236 +++ + + R+ G+R + R V + ++ I I K V Sbjct: 13 IKRILAMAPS-LKARVMLSLAYGCGMRAGEVVRLKVGDIDSDQEIIRIVQSKGRKDRIVM 71 Query: 237 LPDGFMKLLAMT------------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284 LP + LL P + F + ++A Q S FK A +AG+ K Sbjct: 72 LPVDILSLLRDWWKERPTGQDKDVPAPERVLFPGYRGKHLSARQISRLFKETAREAGITK 131 Query: 285 --SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 + H +R AT + G + A G + Y A Sbjct: 132 PVTLHTLRHSFATHLLERGVDIRVIQALLGHSKLTTTARYASVA 175 >gi|325272710|ref|ZP_08139063.1| Orf28 [Pseudomonas sp. TJI-51] gi|324102156|gb|EGB99649.1| Orf28 [Pseudomonas sp. TJI-51] Length = 315 Score = 97.8 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 44/268 (16%), Positives = 88/268 (32%), Gaps = 28/268 (10%) Query: 89 VNSRISFESYFDQIIRKSGDFD---YRKITTKHI---RSGVESRKHTPSSAIQFLTSMRV 142 +R ++ G +R++ H+ R+ +E R + ++ + L ++ Sbjct: 37 PQTRRAYSIDIGDFTAFVGIVHPDQFREVQRAHVLAWRADLERRVLSAATIRRKLAALTS 96 Query: 143 LFKWAVRQE-YVAINPCLSVERPKRKTEGIRP--WTKEDMQQFKSFWSE----GSQPRLA 195 LF + NP V+RP ++ + + + G + R Sbjct: 97 LFDHLLDSNAVAGGNPVHGVKRPPNESNEGKTPALGDDQAKALLDAPDLDSVKGLRDRAL 156 Query: 196 FEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTII-TVELPDGFMK-----LLAM 247 LLY GLR ++ V L + + +K G + + L + L A Sbjct: 157 LAVLLYHGLRREEAAMLDVDDLQERRGVRHLKVHGKGRKVRYLPLHPVAAERIHQYLEAD 216 Query: 248 TPIGKETFFINNDKQ----KMNATQFSIWFKAKATKAGV---NKSAHGVRKFSATISADA 300 F + + ++ A A AG+ HG+R +AT + + Sbjct: 217 GERTTGPLFRSVRGRTPGARLLANGIYSIIGFWAKTAGIAVAGLGVHGLRATAATNALEH 276 Query: 301 GATAHELMATYGWKTVDQAETYTKGADR 328 A ++ G + Y + R Sbjct: 277 EADIAKVQTWLGHSNISTTRLYDRRGQR 304 >gi|291521528|emb|CBK79821.1| Site-specific recombinase XerD [Coprococcus catus GD/7] Length = 583 Score = 97.8 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 51/341 (14%), Positives = 109/341 (31%), Gaps = 38/341 (11%) Query: 10 FVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69 F+ + TR I+Y + + R+ + + P+ + Sbjct: 233 FIETDETRWDATIWYLERFRIAKERINQSDSIE------------KISFQEVLQPKNRL- 279 Query: 70 TLKWLISEYRK-SAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH 128 L+ EY K G LA+++ +R+ + + K I +++ ++ Sbjct: 280 ----LLQEYMKYEIGIGELALSTVYERFRTIRNFLREISELEVTKCDASLIDVYLKNLQN 335 Query: 129 TPSSAIQF---LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED---MQQF 182 A F ++ ++ K+ + Y+ P + +++ + E+ M+ Sbjct: 336 GAMGAKTFNTNVSGIQFFMKFLEVKGYIKKVPFYASYYLEKQIPVHHDRSVEEDVYMEII 395 Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVELP 238 ++ R+ F L GLR S+ C + + K V +P Sbjct: 396 QNLSQFPEHLRMMFLHLWCVGLRISEVCTLKGDAYYIQNGDCWMKVYQVKMKNYKRVPIP 455 Query: 239 DGFMKLLAMT----PIGKETFFINND-KQKMNATQFSIWFKAKATKAGVNK-----SAHG 288 +L+ + P KE + N + + F K ++ G+ +H Sbjct: 456 VTLYRLMQVYLKKHPTEKEAYIFRNRKGGAFSKSTFMGQMKKYCSQIGIQNGEYIFKSHD 515 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 R AT + G + + G + Y R Sbjct: 516 YRHTVATNFYEHGVSIQSIRDYLGHTFEEMTMQYIDYMPRK 556 >gi|227539590|ref|ZP_03969639.1| tyrosine recombinase XerC [Sphingobacterium spiritivorum ATCC 33300] gi|227240503|gb|EEI90518.1| tyrosine recombinase XerC [Sphingobacterium spiritivorum ATCC 33300] Length = 293 Score = 97.8 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 39/271 (14%), Positives = 86/271 (31%), Gaps = 26/271 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH-----IRSGVESRKHTPSSAIQFLTS 139 + ++ ++ + D + H S + +S + +++ Sbjct: 14 KRYSNHTIEAYTHELNVFFTFLQDQGVPEEEADHRVIRLYLSHLMEEGRQATSVNRSISA 73 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----QQFKSFWSEGSQPR-- 193 +R +K+ R+ NP ++ K + K+ M Q + + R Sbjct: 74 LRTYYKFLQRESLTDQNPLTLIKALKTPKKLPSVMEKDKMVGLLDQMEGAVDSFTDERDY 133 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAM---- 247 L E L +G+R ++ + + + N I K V + ++ L + Sbjct: 134 LVLELLFGTGIRLTELLQIKITDIDFYNKNILI-LGKRNKERLVPVNHTLLEKLKIYIQQ 192 Query: 248 ---TPIGKET--FFINNDKQKMNATQFSIWFKAKA--TKAGVNKSAHGVRKFSATISADA 300 I +T + + ++ KS H +R AT D Sbjct: 193 LDNQKIDNKTAFLIVTKEGKQAYPKMIYRIVHRYLSLISTQRKKSPHVLRHTFATALLDN 252 Query: 301 GATAHELMATYGWKTVDQAETYTK-GADRIR 330 GA + + G + + YT +R++ Sbjct: 253 GADLNAIKELLGHAGLAATQVYTHNSVERLK 283 >gi|220904240|ref|YP_002479552.1| integrase family protein [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219868539|gb|ACL48874.1| integrase family protein [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 373 Score = 97.8 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 43/276 (15%), Positives = 95/276 (34%), Gaps = 36/276 (13%) Query: 85 GSLAVNSRISFESYFDQIIR-----KSGDFDYRKITTKHIRSGVE---SRKHTPSSAIQF 136 + +R ++ Q+ + + +T +H+++ + + SS + Sbjct: 78 KGASEATRKAYAVDLAQLAEFLRGQEIDLGQPQTVTRRHMQAFLAWLFRKGEAKSSMARK 137 Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG------- 189 L + R F++ +R VA N V P+++ R ++ + Sbjct: 138 LAAARSFFRFQMRGGKVAENVAAQVRNPRQEKRHPRALNVDETFALLDSATGPGGKRGPV 197 Query: 190 ----------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-ELP 238 + E L SGLR S++ V +Q + ++ G+ + L Sbjct: 198 AGSAEEERILCRDLALAELLYGSGLRISEALSLDVDDVQLSSRVLRVMGKGSRERLAPLS 257 Query: 239 D--------GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHG 288 D + + + F+ ++N + + + +AG+ S H Sbjct: 258 DTSFSCLKAWLEERPLLALPDEAALFVGARGARLNRREAARIVERLCRRAGLTFTVSPHS 317 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 +R AT +AGA + G + + + YT+ Sbjct: 318 LRHSFATHLLEAGADMRSVQELLGHQRLTTTQRYTQ 353 >gi|329667143|gb|AEB93091.1| putative prophage integrase [Lactobacillus johnsonii DPC 6026] Length = 391 Score = 97.8 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 58/382 (15%), Positives = 130/382 (34%), Gaps = 58/382 (15%) Query: 14 ERTRHGKIIYYF-----RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68 + + GK Y F + +G R+++ T+ A + + + N ++K Sbjct: 12 YKLKSGKKRYEFVISLGQNSNGDRVQVHRRGFKTYAEAET--VFNKLSQTKPDNFVKQKQ 69 Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRK 127 + L + ++ + ++ + FD +I G+ KIT ++ + + Sbjct: 70 IKVSKLRDLWFENYK-TQVKESTANKNKQVFDNHVIPDFGNQYVDKITVAELQKWADRKA 128 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR-----PWTKEDMQQF 182 + LF++ +R YV+ NP + PK+ + R +T++++ QF Sbjct: 129 KQIVKYRDAINEFNALFEYGIRLNYVSENPLKRIIIPKKTSRPRRDTEHNVYTRDELNQF 188 Query: 183 KSFWSE-GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT------------ 229 E G F+ L +GLR S++ Q + ++ KT Sbjct: 189 LEVAKEYGLVQYTYFKLLSATGLRKSEALALTWQDIDLKAGTLSVNKTLAYGLDNKTIIQ 248 Query: 230 -----GTIITVELPDGFMKLL----AMTPIGKETFFINNDKQKMNATQFSIWFK------ 274 + + + D ++L I F + ++ W K Sbjct: 249 PPKSPKSKRILPISDSLKEVLIDYKQKQKIISNKLFHTIKGTYLKMSKPDQWLKSIYAKD 308 Query: 275 -----AKATKAGVNK--------SAHGVRKFSATIS-ADAGATAHELMATYGWKTVDQA- 319 A + + + HG R AT+ A+ + G + + Sbjct: 309 HEEKVKYAKTHNLKEPQPDLRHITVHGFRHTFATLLIAETNVKPKTVQMLLGHENIQMTL 368 Query: 320 ETYTKGADRIRL-GIKNSRRIS 340 + YT ++ + + ++++ Sbjct: 369 DIYTHVNNKNKEDAVNALKQLN 390 >gi|298387319|ref|ZP_06996872.1| tyrosine type site-specific recombinase [Bacteroides sp. 1_1_14] gi|298259988|gb|EFI02859.1| tyrosine type site-specific recombinase [Bacteroides sp. 1_1_14] Length = 383 Score = 97.8 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 49/235 (20%), Positives = 91/235 (38%), Gaps = 14/235 (5%) Query: 111 YRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV---ERPKRK 167 + S +++ S+ + ++ + V A++ Y INP + E+ K+ Sbjct: 147 FIDYLKHDYVSYKGNKRLQNSTIVDYVRTFSVAINAAIKDGYKIINPFKLLSSDEKVKQP 206 Query: 168 TEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL---QNNIFSI 224 ++E++ + A+ F +SGLR SD +++ F++ Sbjct: 207 DSHREYLSQEELLKLMITPCRRDDIGKAYLFACFSGLRISDIRALRWKNIIAEDGQFFAM 266 Query: 225 K-TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283 QKTG + + LPD M+++ + ++ F N T K A AG+N Sbjct: 267 LFMQKTGKELKIPLPDKAMEIIPIRGNDEDEVF----SLPSNPTVEDN-LKKWAEAAGIN 321 Query: 284 K--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336 K + H R AT+ G + + G V + Y K DR ++ N Sbjct: 322 KHLTFHTARHTYATLLLTLGTDLYTVSKMLGHTNVATTQIYAKVVDRKKVDAVNL 376 >gi|78777157|ref|YP_393472.1| Phage integrase [Sulfurimonas denitrificans DSM 1251] gi|78497697|gb|ABB44237.1| Phage integrase [Sulfurimonas denitrificans DSM 1251] Length = 392 Score = 97.8 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 48/265 (18%), Positives = 89/265 (33%), Gaps = 33/265 (12%) Query: 93 ISFESYF----DQIIRKSGDFDYRKITTKHIRSGVESR--KHTPSSAIQFLTSMRVLFKW 146 +E + ++ G I I+ TPSSA ++ + + + Sbjct: 102 HVYERKMAAFKNYVVPYFGKTKISAIKPMDIQDWQNRLLTTLTPSSAQKYRSIFYNILQD 161 Query: 147 AVRQEYVAINPCLSVERPKRKTEGIR---------PWTKEDMQQFKSFWSEGSQPRLAFE 197 A E + NP V+ PK+K++ P+ +++ + ++ Sbjct: 162 AFINEIIVKNPMQLVKAPKQKSKQKTLFDEEEDVMPFNNAEIKLILEDTQLFEHNKNFYK 221 Query: 198 FLLYSGLRCSDSCRAGVQHL--QNNIFSIKT----QKTGTIITVE-------LPDGFMKL 244 +L++G+R ++ Q + I K GT T+ LP L Sbjct: 222 LMLFTGMRPGEAVALRWQDILFDKKQIKIMQTRVAGKDGTPKTMSSMRYVDILPQTLEVL 281 Query: 245 L--AMTPIGKETFFINNDKQK-MNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADA 300 L KE F ++ + + FK T+ + + + +R A+ Sbjct: 282 LSQQKLTGDKEYLFYTRSGKRYFSHDTLAASFKRLLTRNKIKERVLYNLRHTFASQMISQ 341 Query: 301 GATAHELMATYGWKTVDQA-ETYTK 324 G + T G K V TYTK Sbjct: 342 GVDIVWVSKTLGHKDVSITLSTYTK 366 >gi|257076713|ref|ZP_05571074.1| integrase/recombinase [Ferroplasma acidarmanus fer1] Length = 280 Score = 97.8 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 31/148 (20%), Positives = 50/148 (33%), Gaps = 11/148 (7%) Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLA-- 246 + LY+G+R S+ + + NI I K V +PD + + Sbjct: 119 RDIAVISVFLYTGIRVSELTNLQIGDVDFDENIIYIHAGKGDKDRIVVMPDICREHIKSY 178 Query: 247 -----MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299 FI+N K K + + K A AG+ K + H +R AT Sbjct: 179 MKERIRIKSSNNYLFISNKKTKFDTSTVERMVKRVAKNAGITKNVTPHVLRHTFATSILR 238 Query: 300 AGATAHELMATYGWKTVDQAETYTKGAD 327 G + G ++ + YT D Sbjct: 239 NGGDIRFIQQILGHSSLATTQIYTHIDD 266 >gi|254787261|ref|YP_003074690.1| site-specific recombinase, phage integrase family [Teredinibacter turnerae T7901] gi|237687132|gb|ACR14396.1| site-specific recombinase, phage integrase family [Teredinibacter turnerae T7901] Length = 317 Score = 97.8 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 48/298 (16%), Positives = 105/298 (35%), Gaps = 45/298 (15%) Query: 85 GSLAVNSRISFESYFDQIIRKSGD-FDYRKITTKHIRSGVES---RKHTPSSAIQFLTSM 140 L+ +S ++E + G KI K I V++ + ++ + L + Sbjct: 18 KKLSHHSIRAYERDLQTFLVVVGRRARLEKIDRKIITKFVDACFADGLSHATVKRRLACL 77 Query: 141 RVLFKWAVRQEYVAINPCLSVE-RPKRKTEGIRPWTKEDMQQFKSFW------SEGSQPR 193 + LFKW +E + +P E + + R + +++ + + S R Sbjct: 78 KALFKWLENEEILDDSPFRKFELKVRLPHRLPRNLSVQELNKLLRICRSRLGLPKNSDYR 137 Query: 194 L------------------AFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTII 233 + E L +G+R + +Q + Q I+ K Sbjct: 138 VGEFASVSRSNLNHLTTLVCVELLFTTGVRVGELTGIRLQDIYLQEKFIHIR-GKGQRER 196 Query: 234 TVELPD--------GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284 V + D +++L +T + +N+ + + IW K + A + + Sbjct: 197 RVFVTDKSIRNLIESYIQLRKITTPIDQNLLVNSRGRPATSQMVRIWLKNCSKAANLTRV 256 Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG--ADRIR-LGIKNSRR 338 + H R +AT + G + G +++ + Y +D +R + + N R+ Sbjct: 257 ATPHMYRHSTATELLNNGVDIIYVQKLLGHQSISTTQIYAHVSHSDVMRNVALANIRK 314 >gi|237713490|ref|ZP_04543971.1| tyrosine type site-specific recombinase [Bacteroides sp. D1] gi|262407276|ref|ZP_06083824.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|229446472|gb|EEO52263.1| tyrosine type site-specific recombinase [Bacteroides sp. D1] gi|262354084|gb|EEZ03176.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] Length = 419 Score = 97.8 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 37/237 (15%), Positives = 76/237 (32%), Gaps = 10/237 (4%) Query: 110 DYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169 D+R + G + + ++A + + K A Y + ++ K K Sbjct: 182 DFRLFLLDAPQGGNKKGTISQNTASTYFAIFKAGLKQAFVDGYFVSDIAAKIKGIKEKEA 241 Query: 170 GIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK---- 225 T E++ + + + + A F +GLR D + + L + Sbjct: 242 RREHLTLEELNRLVCTPCDNATIKRAALFSALTGLRHCDIMKMTWKELTKEGTHYRINFD 301 Query: 226 TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284 +KT + + + + L + F + + W +G+ K Sbjct: 302 QKKTKGVEYMPISEQAYDLCGEPGHPDQLVFEGLPAPSWISKPLARWI----EASGITKH 357 Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340 + H R AT+ G + G V + YTK D + ++ +I Sbjct: 358 ITFHCFRHTYATLQLSNGTDLFTVSKMLGHTNVRTTQRYTKVVDEKKENAADAIKID 414 >gi|317401433|gb|EFV82066.1| integrase/recombinase [Achromobacter xylosoxidans C54] Length = 324 Score = 97.8 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 41/280 (14%), Positives = 83/280 (29%), Gaps = 41/280 (14%) Query: 85 GSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIR---SGVESRKHTPSSAIQFLTS 139 + ++ + + + ++ HIR + + ++ P S + L + Sbjct: 25 RRYSPHTLDGYRRELGFLHALAERAKLPLERLGNGHIRQFVARLHAQGRGPRSLARTLAA 84 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-------SEGSQP 192 R ++W +A NP V PK + + E Q + Sbjct: 85 WRGFYQWWAPAIGLAGNPVAGVRAPKAPRSLPKALSVEQTQALLDRAPAKVATEPAALRD 144 Query: 193 RLAFEFLLYSGLRCSDSCRA-------------GVQHLQNNIFSIKTQKTGTIITVELPD 239 + FE L SGLR S+ G +L I K G +V + Sbjct: 145 QAMFELLYSSGLRLSELVGLDLRYARSADYESRGWLNLDEAEV-IVLGKGGKRRSVPVGQ 203 Query: 240 GFMKLLAMTPIGKE-------------TFFINNDKQKMNATQFSIWFKAKATKAGV--NK 284 + L + F+ ++++ + A AG+ + Sbjct: 204 AAVAALQRWIEARPQLAPPAASPSDAAALFLGARGRRISPRVVQLQLAHVAQAAGLPTHV 263 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R A+ + + G + + YT+ Sbjct: 264 HPHVLRHSFASHVLQSAQDLRAVQEMLGHANISTTQIYTR 303 >gi|308233786|ref|ZP_07664523.1| tyrosine recombinase XerD [Atopobium vaginae DSM 15829] gi|328943765|ref|ZP_08241230.1| tyrosine recombinase XerD [Atopobium vaginae DSM 15829] gi|327491734|gb|EGF23508.1| tyrosine recombinase XerD [Atopobium vaginae DSM 15829] Length = 319 Score = 97.8 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 41/297 (13%), Positives = 97/297 (32%), Gaps = 42/297 (14%) Query: 70 TLKWLISEYRKSA-HWGSLAVNSRISFESYFDQ---IIRKSGDFDYRKITTKHIRSGVES 125 T + EY +V++ S++ ++ D IT + + + + Sbjct: 3 TFDTIKEEYLNYVLIERGYSVHTLHSYDHDLTLYLSFLQSHDIDDPAYITREIVEAYIAH 62 Query: 126 RKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM--- 179 H + S+ + ++S++ K+ V ++ +P +++ PK+ T++ + Sbjct: 63 LFHEGMSSSTVQRAVSSIKGFHKFMVVEQICENHPTTNLKLPKKSFHLPDVLTQDQIIHL 122 Query: 180 -----------------QQFKSFWSEGS--QPRLAFEFLLYSGLRCSDSCRAGVQHLQNN 220 ++ S + + + E L GLR S+ C + + Sbjct: 123 LDDPFKPQLLPAPKLTARKALSLKPQACFYRDKAILEMLYGCGLRVSELCGLNQGDVLVS 182 Query: 221 IFSIKT-QKTGTIITVELPDGF-----------MKLLAMTPIGKETFFINNDKQKMNATQ 268 ++ K V LLA +P + F++ +++ Sbjct: 183 DELVRVFGKGSKERLVPCLGTALESYQNYCTKWRALLACSPKTTDAVFLSVRGTRISRQA 242 Query: 269 FSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 + + G+ H +R AT + G + G ++ + YT Sbjct: 243 VFSLVERYGSYVGIKGLHPHTLRHSYATHMLEGGMNLRIVQELLGHASISTTQLYTH 299 >gi|188589919|ref|YP_001921531.1| tyrosine recombinase XerD [Clostridium botulinum E3 str. Alaska E43] gi|251778368|ref|ZP_04821288.1| tyrosine recombinase XerD [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|188500200|gb|ACD53336.1| tyrosine recombinase XerD [Clostridium botulinum E3 str. Alaska E43] gi|243082683|gb|EES48573.1| tyrosine recombinase XerD [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 292 Score = 97.8 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 31/226 (13%), Positives = 75/226 (33%), Gaps = 15/226 (6%) Query: 112 RKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171 K+T + + S + + S+R + + Q + P + + K + Sbjct: 47 DKLTVMAYIQYLLESGKSERSINRIVISLRSFYSYLKSQSLINEVPKIEYKSSKNNRKLP 106 Query: 172 RPWTKEDMQQF----KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-T 226 + T +++ + + +G + E + +G++ S+ V + + ++ T Sbjct: 107 QILTVDEVDKIIRTVEKDCPKGIRDNALLELMYATGMKVSELISLNVDDINLELHFVRCT 166 Query: 227 QKTGTIITVELPDGFMKLL--------AMTPIGKETFFINNDKQKMNATQFSIWFKAKAT 278 + + K L + G F+N + K+ K + Sbjct: 167 DSRNFERLIPIGRSACKALNEYLSIRYKIAECGVPNLFVNLNGNKLTRQGIWRIVKEYSK 226 Query: 279 KAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 +A ++K + R A GA + G + + +TY Sbjct: 227 RAHIDKDVNLNTFRHSFAVHLLQNGANVRAVQKLLGNQVLTYMDTY 272 >gi|154487520|ref|ZP_02028927.1| hypothetical protein BIFADO_01375 [Bifidobacterium adolescentis L2-32] gi|154084038|gb|EDN83083.1| hypothetical protein BIFADO_01375 [Bifidobacterium adolescentis L2-32] Length = 389 Score = 97.8 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 51/344 (14%), Positives = 111/344 (32%), Gaps = 37/344 (10%) Query: 9 PFVTKERTRHGKIIY--YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66 + ++ T Y +RK G A+ +A + P+ Sbjct: 2 AYTIRQYTTKSGKRYEVRYRKPDGSSTGRRGFKRKMDADAWGAANVTAAKSVGAYIDPQA 61 Query: 67 KPTTLKWLISEYRKSAHWGSLAVNSRISFE-SYFDQIIRKSGDFDYRKITTKHIRSGVES 125 ++ + + + + S E ++ + + G + + IT ++ V Sbjct: 62 GRRLVEDFWEPWLAAKKTKA-KPSYIKSLEDAWRVHVEPQWGMREMQSITRDEVQRWVTD 120 Query: 126 RKHTPSSAIQFL--TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 S+++ +R L + A + NPC +E P+++ + +++ + Sbjct: 121 LAGRRSASVTIRAENLLRSLMERAKADRCIHDNPCDGIELPRKQVRKHVYLSADELSRVA 180 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI---------------KTQK 228 G + + L G+R + V+ + + K Sbjct: 181 MQC--GWREPIVLTLGL-CGMRWGELVALRVEDVDLQRCRLHIYRSITRLSSRLVETDPK 237 Query: 229 TGTIITVELPDGFMKLLAMTPIGKET--FFINNDKQK--------MNATQFSIWFKAKAT 278 T +V P LLA G+ + F + N T+ WF Sbjct: 238 THDGRSVMFPLVLRPLLARQCEGRRSSDFLFTAPGEPLDEPMGNGWNPTRSDGWFAVALR 297 Query: 279 KAGVNK---SAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319 +AGV++ + H +R +A++ +GA + G K+ Sbjct: 298 RAGVDRGHMTIHDLRHTAASLMVQSGANVKTVQRQLGHKSAAMT 341 >gi|296116508|ref|ZP_06835119.1| Integrase [Gluconacetobacter hansenii ATCC 23769] gi|295976974|gb|EFG83741.1| Integrase [Gluconacetobacter hansenii ATCC 23769] Length = 266 Score = 97.8 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 45/207 (21%), Positives = 79/207 (38%), Gaps = 8/207 (3%) Query: 67 KPTTLKWLISEYRKSAHWGS-LAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125 P ++ LI +Y S L ++R + Y D++ GD R IT + I + + Sbjct: 57 VPGSISALIVDYLADEEAQSRLRASTRRLYRGYLDRMRDDWGDIAARAITRQEIMAIKKR 116 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 TP A Q L+ +++L A Q V+ N R + + + W+ E F Sbjct: 117 MLGTPRKANQILSLLQILLARAKDQGIVSENVAERFGRLRIPSRV-QIWSYEMEDAFVER 175 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQKTGTIITVELPDGF 241 Q LA+ LLY+ R SD + +++ KTGT++ V + + Sbjct: 176 ARPTLQ--LAYMLLLYTVQRPSDVLSMDASLISERNGRLFIALRQSKTGTLLDVPIHERL 233 Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQ 268 + E +++ T Sbjct: 234 ASRIRERMRQIEQETAGRTGRRVTRTG 260 >gi|254426111|ref|ZP_05039828.1| Phage integrase, N-terminal SAM-like domain protein [Synechococcus sp. PCC 7335] gi|196188534|gb|EDX83499.1| Phage integrase, N-terminal SAM-like domain protein [Synechococcus sp. PCC 7335] Length = 352 Score = 97.8 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 46/277 (16%), Positives = 95/277 (34%), Gaps = 28/277 (10%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH---------TPSSAIQ 135 LA N+R +E Q ++++T + I + K +P++ Q Sbjct: 39 RELAENTRKVYERQLRQFYE-WAQKPWQQVTHRDIDRYKQHLKALPSKQGGSLSPATINQ 97 Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF---KSFWSEGSQP 192 + S++ FKW ++Y++ N L++E+ K + + + ++ ++ E Sbjct: 98 SINSLKSFFKWLTVKDYISRNSTLTIEQLKDAPKPPKDLDEAEVDALFDGLNYRGESEVR 157 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA------ 246 LA LL GLR + ++ + K G+ V L + L Sbjct: 158 DLAILQLLSHGLRAGEVSALNIEDYDGKRVHVLGAKWGSDGKVPLKPEAIMALDSYLGWL 217 Query: 247 ----MTPIGKETFFI----NNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATIS 297 M + + N+ +++ K A + + + H +R AT Sbjct: 218 VRQGMATTPESPLLVSLSRNSRGKRLGYRGIYDLVKELAAASELEDVHPHRLRHTCATSL 277 Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIK 334 G + K+ Y+ A I++ Sbjct: 278 VAQGMDSILAKRLVRIKSDRVFARYSDRALDIKMEEA 314 >gi|168186351|ref|ZP_02620986.1| putative integrase/recombinase [Clostridium botulinum C str. Eklund] gi|169295760|gb|EDS77893.1| putative integrase/recombinase [Clostridium botulinum C str. Eklund] Length = 274 Score = 97.8 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 41/221 (18%), Positives = 76/221 (34%), Gaps = 19/221 (8%) Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV--ERPKRKTEGIRPWTKEDMQ 180 + R + + L S+ FK+ N + + E+ + + + +D+Q Sbjct: 59 IYDRGLKIKTINRKLVSINQFFKF--------NNIAVDIRQEKVQMQNFLDDILSNKDVQ 110 Query: 181 QF--KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238 ++ + + R L Y+G+R S+ + + + +I K V +P Sbjct: 111 ALVNATYKKDDLRARTIIYTLYYTGMRVSEMLQLTIYDTKKQSITI-LGKGAKHREVFIP 169 Query: 239 DGFM---KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKF 292 + + I K T + +N K A AGV+KS AH R Sbjct: 170 NKLKDIWEAYMNVRIRKGTALFTGKRGPINRKTVDSLIKEYAALAGVSKSKAHAHNFRHL 229 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 AD G + G + ++ YT+ L I Sbjct: 230 YCKNLADKGIDISTIADIAGHQNINTTRIYTRKTKEELLDI 270 >gi|134298655|ref|YP_001112151.1| phage integrase family protein [Desulfotomaculum reducens MI-1] gi|134051355|gb|ABO49326.1| phage integrase family protein [Desulfotomaculum reducens MI-1] Length = 293 Score = 97.8 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 39/278 (14%), Positives = 87/278 (31%), Gaps = 22/278 (7%) Query: 68 PTTLKWLISEYRKSAHWGSLAVNSRISFESYF----DQIIRKSGDFD----YRKITTKHI 119 T ++S++ + + G A ++ +++ I +G I + Sbjct: 2 KNTSGNILSDFLEDIYSGGTARSTVEAYQKDVVYFSKWYIDTTGKEPHLWDITSIDLREY 61 Query: 120 RSGVES-RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 + + S + P++ + + +M +WA + Y++ + K + + + + Sbjct: 62 QEYMLSVQGLMPATINRRMAAMEKYIRWAHGKGYISRLLAF-PKIIKEQKTPPKALGRVE 120 Query: 179 MQQFKSFWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT---QKTGTII 233 + + R ++ GLR + + L K Sbjct: 121 QNRLLREAERHGKARDIALIRLMMSCGLRVGEVVSIRLSDLDIGERHGTVAVLGKGKKYR 180 Query: 234 TVELPDGFMKLLAMTPI-------GKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA 286 V +P K + + F N + + A K AG++ Sbjct: 181 KVPVPPEARKAIKEWLAERTQRYPDNDWLFPNRNVGNITARNVEQVIKNIGKFAGLDLHP 240 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R +AT GA + G ++ YTK Sbjct: 241 HVLRHTAATNMIRTGADIVTVAQILGHANLNTTAIYTK 278 >gi|331091853|ref|ZP_08340685.1| hypothetical protein HMPREF9477_01328 [Lachnospiraceae bacterium 2_1_46FAA] gi|330402752|gb|EGG82319.1| hypothetical protein HMPREF9477_01328 [Lachnospiraceae bacterium 2_1_46FAA] Length = 350 Score = 97.8 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 50/296 (16%), Positives = 97/296 (32%), Gaps = 30/296 (10%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSG---VESRKHTP 130 I Y + L NS + + + I+ G +IT I ++ + ++ Sbjct: 62 IQVYFEDKK-NELKENSIRNKQHMMNKHIVPYFGTRKMNEITPAEIIQWQNIIQEKGYSK 120 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER-PKRKTEGIRPWTKEDMQQFKSFWSEG 189 + + LF A + + NPC V++ K + WTK + +F + G Sbjct: 121 TYERMIQNQLNALFNHAQKIYNLKENPCKKVKKMGKSDANKLEFWTKAEYDRFIAGIEPG 180 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQ-------------KTGTII- 233 S+ L FE L ++G+R + + N+ I KT + Sbjct: 181 SEDYLIFEILFWTGIREGELLALSLSDFDMSGNLLHINKTYNRIKKRDVIDTPKTENSVR 240 Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKF 292 T+++P+ + + F + + A K GV H +R Sbjct: 241 TIDIPNFLKEEVQEYAKKHYGFPEDQRLFPIVARTLQKRLKKYEALTGVKPIRVHDIRHS 300 Query: 293 SATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSVVDSDD 347 G + G K + TY L ++++ ++D+ Sbjct: 301 HVAYLIYQGVEPLIIKERLGHKDIQMTLNTYGH------LYPSQQKKVAEMLDNKR 350 >gi|229029889|ref|ZP_04185958.1| Prophage LambdaBa04, site-specific recombinase, phage integrase [Bacillus cereus AH1271] gi|228731397|gb|EEL82310.1| Prophage LambdaBa04, site-specific recombinase, phage integrase [Bacillus cereus AH1271] Length = 378 Score = 97.8 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 43/307 (14%), Positives = 102/307 (33%), Gaps = 46/307 (14%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134 I+ Y K L + S++ + + + + ++ + + + Sbjct: 82 ITSYEKDMSLVKLYILPPFSYKKI----------KSIKPVMIQSYYAELKEKGLSNGTIS 131 Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-GSQPR 193 +R +FK AV E + N V++P+ + ++ W+ E+ +F + E + Sbjct: 132 NIHRCLRCIFKHAVEWEIIHDNIMNKVKKPREEQGEMKTWSSEECNRFLQYLKEKNIKYH 191 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKE 253 + F +Y+G+R + + + + I K+ L +K + Sbjct: 192 MFFLLAIYTGMRRGELLALTWKDIDFDNKRILVNKSLVKTEKGLFKAAIKTKSSNRSISI 251 Query: 254 TFFINNDKQKMNATQFSIWFK-------------------------------AKATKAGV 282 + F+ Q + + +F+ KAGV Sbjct: 252 SSFVIGKLQSYYSYKKKEFFRWGIHLNEEAYIFTGNTIHSPLHIDAPHRFLNDHYKKAGV 311 Query: 283 NK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRIS 340 + H +R AT+ AG + G ++ + Y+ + + + Sbjct: 312 PRIRIHDLRHTHATLMLQAGEHPKIVQDRLGHSSIQMTLDKYSHITQ--NMQQQAAENFE 369 Query: 341 SVVDSDD 347 S++ S++ Sbjct: 370 SIIKSNE 376 >gi|313114164|ref|ZP_07799716.1| site-specific tyrosine recombinase XerC family protein [Faecalibacterium cf. prausnitzii KLE1255] gi|310623573|gb|EFQ06976.1| site-specific tyrosine recombinase XerC family protein [Faecalibacterium cf. prausnitzii KLE1255] Length = 401 Score = 97.8 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 40/228 (17%), Positives = 78/228 (34%), Gaps = 20/228 (8%) Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTKED----MQQ 181 + SS + L S+ + + V Q + +P ++ PK+ + T E ++ Sbjct: 101 GNKKSSTARRLASLHGFYDYLVNQVNRLGADPTAAIHPPKQDKVLPKYLTAEQSMELLES 160 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG 240 ++ + L G+R ++ + + I+ K V L D Sbjct: 161 TQTQSDFPERDYCMVTLFLNCGMRLAELVGMNLDDIDLENRQIRLFGKGHKERMVYLNDA 220 Query: 241 FMKLLAM-----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHG 288 M+ L + P K F K++++ + AG+ S H Sbjct: 221 CMEALRLYLGKRNTMEGLLPQEKAVFITRRRKERISNRRVEQLVTGAMKAAGLKGFSTHK 280 Query: 289 VRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGAD-RIRLGIK 334 +R +AT+ G L G V + YT + ++R I+ Sbjct: 281 LRHTAATLMYQTGNVDILTLKQLLGHSNVSTTQIYTHLQEFQVRAAIE 328 >gi|298243705|ref|ZP_06967512.1| integrase family protein [Ktedonobacter racemifer DSM 44963] gi|297556759|gb|EFH90623.1| integrase family protein [Ktedonobacter racemifer DSM 44963] Length = 332 Score = 97.8 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 43/276 (15%), Positives = 89/276 (32%), Gaps = 37/276 (13%) Query: 88 AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQ------------ 135 ++ + + + G + KIT H+R + TPS I+ Sbjct: 23 SIAYQQALGYLVSLLSSVCGVNELEKITVLHLRECLRYMIETPSEVIRQRTFGKKSNLAD 82 Query: 136 -----FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-- 188 ++T+ +V F W ++E + +P ++ P+ + ++ +T E + + Sbjct: 83 STMKTYVTNWKVFFNWCYQEELIDSDPSARLKTPRPEKRVLKTFTSEHIYKMLDTLDLST 142 Query: 189 --GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL- 245 G + + LL +G+R S+ ++ + + ++ K V + KLL Sbjct: 143 DMGFRDYVILLLLLDTGIRLSEIGTLLLEDVHDTYIKVR-GKGRKEREVGIHPDLGKLLW 201 Query: 246 --------AMTPIGKETFF-INNDKQKM-----NATQFSIWFKAKATKAGVNKSAHGVRK 291 P + F + + V S H R Sbjct: 202 KYVHKYRHPGNPDEPKIFIDCTKQGKGKAISGPGVKGILYRLRLALGFKDVRLSPHTFRH 261 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 A + G +L G +V + Y + D Sbjct: 262 TFAKMYMAHGGDIFKLSREMGHSSVRITQRYLEDFD 297 >gi|295397658|ref|ZP_06807733.1| tyrosine recombinase XerC [Aerococcus viridans ATCC 11563] gi|294974121|gb|EFG49873.1| tyrosine recombinase XerC [Aerococcus viridans ATCC 11563] Length = 389 Score = 97.8 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 54/350 (15%), Positives = 121/350 (34%), Gaps = 57/350 (16%) Query: 41 STFIPAYMSALTGSTPKREYINSPRKKPT--TLKWLISEYRKSAHWGSLAVNS-RISFES 97 S F + + K+E++ + + + + ++ ++ ++ +I + Sbjct: 37 SGFAKKRDAEIAERKAKQEFLKAGTTNTDRLKFEEVAKIWLETYEMSNIKESTFQIQRDI 96 Query: 98 YFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVR-QEYVAIN 156 + I+ G KIT +S V ++ + + ++A + + + N Sbjct: 97 VLNHIVPNLGKHYVDKITPIMCQSLVNKFTREFTNYSNMIGLATRILEYARKTLKLIDDN 156 Query: 157 PCLSVERP----KRKTEGIRP--WTKEDMQQFKSFWSE--GSQPRLAFEFLLYSGLRCSD 208 P VERP K K+E +++E++ F + + + ++G+R + Sbjct: 157 PMKDVERPRKARKLKSERYEAPYFSREELVYFLECAKKMNDPKAYAIIHLMSFTGIREGE 216 Query: 209 SCRAGVQH--------------LQNNIFSIKTQKTGT---IITVELPDGFMKLLAMTPI- 250 +C + ++ F K T + T+ + D ++L Sbjct: 217 ACGLMWKDFDEVNNTITIERAIIRGKNFEKKVGTTKSSASERTISIDDETAQVLRNWKSK 276 Query: 251 -------------GKETFFINNDKQK-----MNATQFSIWFKAKATKAGVNKSAHGVRKF 292 GK F NDK + + K + +AHG+R Sbjct: 277 QKEIMFMLGYNTSGKNQFMFTNDKNEIYQPLYAYDRIQAVCKKFPEIGKM--TAHGLRHT 334 Query: 293 SATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISS 341 T+ +AG + E+ G + E Y+ + ++S+RI + Sbjct: 335 HVTLLLEAGMSIKEVQERLGHENTKMVLEVYSH------INKESSKRIGN 378 >gi|257439773|ref|ZP_05615528.1| tyrosine recombinase XerC [Faecalibacterium prausnitzii A2-165] gi|257197793|gb|EEU96077.1| tyrosine recombinase XerC [Faecalibacterium prausnitzii A2-165] Length = 395 Score = 97.8 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 43/239 (17%), Positives = 81/239 (33%), Gaps = 23/239 (9%) Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTKE------DM 179 + SS + L S+ + + V Q + NP S++ PK+ + T E + Sbjct: 101 GNKKSSTARRLASLHGFYDYLVNQVNKLTENPTASIKPPKQDKVLPKYLTAEQSMDLLES 160 Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELP 238 Q++S + E + L G+R S+ + + I+ K V L Sbjct: 161 TQYQSDFPE--RDYCMVVLFLNCGMRLSELVGMDLGDIDLEQRQIRLFGKGHKERMVYLN 218 Query: 239 DGFMKLLAM-----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SA 286 + ++ L + P K F K++++ + AG+ S Sbjct: 219 EACVEALQLYLAKRNTMEGLNPKEKAVFVTRRRKERISNRRVEQLVTGAMKAAGLKGFST 278 Query: 287 HGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344 H +R +AT+ G L G +V + YT + + +V Sbjct: 279 HKLRHTAATLMYQTGNVDILTLKQLLGHSSVGTTQIYTHLQEFQVRAAIEQNPLGTVTP 337 >gi|204931052|ref|ZP_03221878.1| integrase [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|204320096|gb|EDZ05301.1| integrase [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] Length = 359 Score = 97.8 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 48/287 (16%), Positives = 94/287 (32%), Gaps = 34/287 (11%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--- 126 T+ I Y SL+VN+ + + K G+ ++TT+HI +ES Sbjct: 75 TVSAWIDRYEVLLQRRSLSVNTYKIRSNQLATVREKMGEIILAEVTTRHIAKFLESWITE 134 Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 K+T + A++ + + +F+ A+ + ++ NP + P+ K R ++ + + Sbjct: 135 GKNTMAGAMR--SVLSDMFREAIVEGHIVKNPVETTRIPEIKVARERL----QLETYNAT 188 Query: 186 WSEGSQP----RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241 + LA + L +G R D + + + KTG I L Sbjct: 189 RTAAEHLPVWFSLAMDLALVTGQRREDIVNMKFSDIVDGRLHVTQIKTGMKIAFPLSLTL 248 Query: 242 MK--------LLAMTPIGKETFFI------NNDKQKMNATQFSIWFKAKATKAGVNKS-- 285 + + + F I N+ ++ + F +G S Sbjct: 249 EAPGLRLGTVIDRCRLVSRTDFMISAGIRKNSPTGNIHPDGLTKKFVKARKISGAKFSDN 308 Query: 286 ---AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 H +R A G + + + Y D Sbjct: 309 PPTFHEIR-SLAGRLYKDERGEEFAQKLLGHTSENTTKLYLDERDNK 354 >gi|109392319|ref|YP_655549.1| gp32 [Mycobacterium phage Halo] gi|189043119|ref|YP_001936060.1| integrase [Mycobacterium phage BPs] gi|239590043|ref|YP_002941890.1| gp32 [Mycobacterium phage Angel] gi|91980569|gb|ABE67289.1| integrase [Mycobacterium phage Halo] gi|171909234|gb|ACB58191.1| integrase [Mycobacterium phage BPs] gi|238890575|gb|ACR77564.1| gp32 [Mycobacterium phage Angel] gi|255927876|gb|ACU41496.1| gp32 [Mycobacterium phage Hope] Length = 398 Score = 97.8 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 44/287 (15%), Positives = 86/287 (29%), Gaps = 17/287 (5%) Query: 52 TGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDY 111 T + +P P ++ +Y S +R + ++ ++ R G Sbjct: 44 ATITGRNTPGPAPVPAPRDWMQILDDYLDSLAAAGYPSTTRATRAAHIRRLARGLGVSPE 103 Query: 112 RKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171 +R E + + + F WA R+ + +P + K Sbjct: 104 NVTGASLVRFFAEQEHWARETRRGYRNTCVSFFGWACREGRIPTDPSADLPSIKPAPPAP 163 Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ---NNIFSIKTQK 228 RP + + + ++ L GLR ++ + L + + K Sbjct: 164 RPAPDRVYRA--ALMAADARVMLMLRLAAELGLRRAEVAQVSTSDLTESFDGYVLVVHGK 221 Query: 229 TGTIITVELPDGFMKLLAMTPIGK-------ETFFINNDKQKMNATQFSIWFKAKATKAG 281 G T+ + D +L+A G F +D ++ W A Sbjct: 222 GGKNRTLPVSDELAELIARGAAGHTDGAPATGYLFPGDDAGHLSPR----WVGRLCGDAL 277 Query: 282 VNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 + + H +R AT + + G +V E YT D Sbjct: 278 PDGWTMHKLRHRFATRAYRGSRNLRAVQTMLGHASVATTEIYTAVED 324 >gi|200388241|ref|ZP_03214853.1| integrase [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|9944851|gb|AAG03003.1| integrase [Salmonella enterica subsp. enterica serovar Typhimurium] gi|199605339|gb|EDZ03884.1| integrase [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|239842528|gb|ACS32045.1| integrase [Salmonella enterica subsp. enterica] gi|260667576|gb|ACX47954.1| integrase [Salmonella enterica subsp. enterica serovar Kentucky] Length = 405 Score = 97.8 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 42/253 (16%), Positives = 83/253 (32%), Gaps = 19/253 (7%) Query: 93 ISFESYFDQIIRKSGDFDYRKITTKHIRSGV--ESRKHTPSSAIQFLTSMRVLFKWAVRQ 150 S+ + + + + K ++A + +R A R+ Sbjct: 125 RSYHGRAELTFEEIDKKFLEGFRKYLLEEPLTKSQSKLAKNTASSYFNKVRAALNEAFRE 184 Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSC 210 + NP V+ K + T ++++ + AF F +GLR SD Sbjct: 185 GIIRDNPVQRVKSVKAENTQRTYLTLDEVRAMTKAECRYDVLKRAFLFSCTTGLRWSDIQ 244 Query: 211 RAGVQHLQN-----NIFSIKTQK----TGTIITVELPDGFMKLLAMTPIGKETFFINNDK 261 + + ++ K K +++ ++LPD +KL+ E F Sbjct: 245 KLTWKEIEEFQDGHYRIIFKQAKLLNAGNSLVYLDLPDSAVKLMGERQDKAERVF----- 299 Query: 262 QKMNATQFSI-WFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318 + + + ++ A AGV K + H R A + G + L G + Sbjct: 300 KGLKYSSYTNVALLHWAMLAGVQKHVTFHVGRHTFAVAQLNRGVDIYSLSRLLGHSELRT 359 Query: 319 AETYTKGADRIRL 331 E Y + R+ Sbjct: 360 TEIYADILESRRV 372 >gi|148265120|ref|YP_001231826.1| phage integrase family protein [Geobacter uraniireducens Rf4] gi|146398620|gb|ABQ27253.1| phage integrase family protein [Geobacter uraniireducens Rf4] Length = 437 Score = 97.8 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 47/287 (16%), Positives = 101/287 (35%), Gaps = 26/287 (9%) Query: 62 NSPRKKPTTLKWL-ISEYRKSAHWGSLAVNSRISF--ESYFDQ-IIRKSGDFDYRKITTK 117 P + T++ L + Y W + + R + + + ++ GD I K Sbjct: 105 PPPPQVELTVRRLAVDLYL--DEWSKIHHSERWHYNNKKALEADVLPAWGDRLAADIRRK 162 Query: 118 HIRSGVES-RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER----PKRKT-EGI 171 +E K P A L + R ++ +AV +E + NP ++ PK + Sbjct: 163 DAVEILELVAKRAPGQARNVLKAARGMYTYAVDRELLEYNPFTDIKISRTIPKMQPMSRD 222 Query: 172 RPWTKEDMQQFKSFWSEG---SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ- 227 R ++++++ + EG + A + +L +G R + Q ++ ++I Q Sbjct: 223 RELSEKEIKHLWNAIDEGGGSDGTKRALKLILITGQRPGEVVGMHRQEIEGKWWTIPWQR 282 Query: 228 -KTGTIITVELPDGFMKLLAMTPIGKETFFIN--NDKQKMNATQFSIWFKAKATKA---- 280 KT + L + F + + + M S + Sbjct: 283 IKTRKRRQEDHRIYLSPLAMSLIGDGKGFIFSDPSGENSMTENALSHHVRKDIPDTVKKP 342 Query: 281 --GVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 G+ + + H +R+ +AT + GA+ + + Y + Sbjct: 343 YYGLPRWTPHDLRRTAATRLSRIGASDEIIDVILNHAKKGVSGIYNR 389 >gi|210612745|ref|ZP_03289460.1| hypothetical protein CLONEX_01662 [Clostridium nexile DSM 1787] gi|210151438|gb|EEA82446.1| hypothetical protein CLONEX_01662 [Clostridium nexile DSM 1787] Length = 356 Score = 97.8 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 46/332 (13%), Positives = 102/332 (30%), Gaps = 44/332 (13%) Query: 41 STFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVN--SRISFESY 98 +F Y A+ +T + I+ +LI + + + E Sbjct: 28 PSFTKDYFRAVEPTTSAKTRISYAYDIRVFFHFLIE---NNPIYHDYTTTQFTLQDLERV 84 Query: 99 FDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPC 158 +Y + + + + + +S+R +++ R + + NP Sbjct: 85 -----EPIDIEEYLEYLKVYKADDNQVITNGEKGLARKFSSLRSFYRYFYRHQMIEKNPT 139 Query: 159 LSVERPKRKTEGIRPWTKEDMQQFKS----------------FWSEGSQPRLAFEFLLYS 202 + V+ PK + I +++ + ++ LL + Sbjct: 140 IFVDMPKLHDKAIIRLDIDEVALLLDYVENCGKELTGQKKVYYEKTKTRDLAILTLLLGT 199 Query: 203 GLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLA-----------MTP 249 G+R S+ + + NN + T+K G+ + + + L P Sbjct: 200 GIRVSECVGLDINDIDFKNNGIKV-TRKGGSEMVIYFGEEVRNALENYLETTRASATPLP 258 Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHEL 307 + F++ +++M K A + NK + H +R T + + Sbjct: 259 DHENALFLSTQRKRMGVQAIENMVKKYAKQVTPNKKITPHKLRSTYGTSLYKETGDIYLV 318 Query: 308 MATYGWKTVDQA-ETYTKGAD-RIRLGIKNSR 337 G K V+ + Y D R R + Sbjct: 319 ADVLGHKDVNTTKKHYAAIDDMRRRQAASAVK 350 >gi|190573348|ref|YP_001971193.1| putative prophage integrase [Stenotrophomonas maltophilia K279a] gi|190011270|emb|CAQ44883.1| putative prophage integrase [Stenotrophomonas maltophilia K279a] Length = 413 Score = 97.8 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 57/306 (18%), Positives = 102/306 (33%), Gaps = 27/306 (8%) Query: 44 IPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-I 102 + A + +K T+ L ++ + ++ +++ D+ I Sbjct: 85 MAQDWLAEVRRGGDPGGAKAEARKAPTVAELCKKFMEDYSKKRNKPSTWRGYQAVIDRCI 144 Query: 103 IRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVA--INPCLS 160 I G + I +E + P+ A + +R +F A + NPC Sbjct: 145 IPMLGRKKVADVKRPDIAGYMEKLSYKPTEANKGFAILRKMFNLAEVWGFRPDGTNPCRH 204 Query: 161 VERPKRKTEGIRPWTKEDM----QQFKSFWSEGSQP-------RLAFEFLLYSGLRCSDS 209 V + R ++M +Q + +EG + RL FEF R S+ Sbjct: 205 VPM-YPPGKKTRLIVDDEMVLIFRQLEKLEAEGLENYVIPLSIRLQFEFA----GRRSEI 259 Query: 210 CRAGVQ--HLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFI----NNDKQK 263 C L N KTG + + LL+ P + ++ N+ + Sbjct: 260 CTLEWDWIDLDNRRVMWPDSKTGGMSK-PMSAEAHWLLSTAPRREGCPYVLPSPNDPTRH 318 Query: 264 MN-ATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 + + W + + HG+R SAT A++G M KTV Q Y Sbjct: 319 LTFGEHYGGWCRVLKAAGVPHVGTHGIRHRSATDIANSGVPIKVGMELTQHKTVAQFMHY 378 Query: 323 TKGADR 328 D+ Sbjct: 379 VHTEDK 384 >gi|167717571|ref|ZP_02400807.1| site-specific tyrosine recombinase XerC [Burkholderia pseudomallei DM98] Length = 244 Score = 97.8 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 35/221 (15%), Positives = 71/221 (32%), Gaps = 26/221 (11%) Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 + S L++ R ++W + + NP +V PKR + + +D + Sbjct: 2 SARSISHRLSAWRAFYRWFSQHVEMNANPVAAVRAPKRAKTLPKALSVDDTAALMDAPTA 61 Query: 189 GS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS------------IKTQKTGTI 232 G+ + E SGLR ++ ++++++ + K Sbjct: 62 GTAESLRDHAILELFYSSGLRLAELIGLDIEYVKDGAYRSAGWLDLAEAEVTVRGKGDKE 121 Query: 233 ITVEL----PDGFMKLLAM----TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284 V + D LA+ F++ +M+ K A AG+ Sbjct: 122 RKVPVGRKALDALHAWLAVRGEFVKHDPRPLFLSVRGNRMSPGVVRERVKRAALAAGIPA 181 Query: 285 --SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 H +R AT + + G ++ + YT Sbjct: 182 NVHPHVLRHSFATHVLQSSGDLRAVQELLGHASISATQVYT 222 >gi|75909304|ref|YP_323600.1| tyrosine recombinase XerD subunit [Anabaena variabilis ATCC 29413] gi|75703029|gb|ABA22705.1| tyrosine recombinase XerD subunit [Anabaena variabilis ATCC 29413] Length = 311 Score = 97.8 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 48/259 (18%), Positives = 90/259 (34%), Gaps = 23/259 (8%) Query: 86 SLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVL 143 L+ +R + Q K D T + + + ++ + L S+ Sbjct: 39 GLSRTTREQYSRDMRQFRAFVKLDDIRIISPMTFIAYAQHLEQTYAVATTRRKLASLSSF 98 Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGI-RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS 202 +AVR ++A NP +V +PK T + T++ + + + + R + L Sbjct: 99 CSFAVRLGFLAANPMAAVRKPKASTTLAGKSLTQQQVFRMLDRTDDH-RNRCLLKVLYSL 157 Query: 203 GLRCSDSCRAGVQHLQNNIFSIKT----QKTGTIITVELPD----GFMKLLAMTPIGK-- 252 GLR S++ + T K G T+ +P +L Sbjct: 158 GLRVSEAVGLRWSDFTEVNPTKTTVSVLGKGGKYRTLVVPQSVWLELTELRTNQQHNGQN 217 Query: 253 ETFFIN-------NDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGAT 303 + F + ++++ S KA A G+ +S AH +R A+ S GA+ Sbjct: 218 DYVFQSYSNRHRKQSGKQLDRCNASKIVKACAVAVGLPESVSAHFLRHACASHSLANGAS 277 Query: 304 AHELMATYGWKTVDQAETY 322 + T G + Y Sbjct: 278 IQLVKETLGHANISTTNWY 296 >gi|283458210|ref|YP_003362828.1| integrase [Rothia mucilaginosa DY-18] gi|283134243|dbj|BAI65008.1| integrase [Rothia mucilaginosa DY-18] Length = 422 Score = 97.8 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 72/371 (19%), Positives = 124/371 (33%), Gaps = 43/371 (11%) Query: 1 MTPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPA--YMSALTGSTPKR 58 MTP+ R P + R + + + LP + T P SAL S Sbjct: 56 MTPA-RQPENRAENRNENREEY----RDEAPSTTLPVTYTRTLAPEQVESSALPDSALPE 110 Query: 59 EYINSPRKKPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQII---RKSGDFDYRKI 114 + + + ++ + + + + + S+ S + + G I Sbjct: 111 SALGVSGEV---FRPVLDRFERFLRYEKHRSEETIRSYISDLEGFFGYMARRGVRHLDSI 167 Query: 115 TTKHIRSGVES---RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171 IR + S R+ S+ ++ +++R F WA +E V NP + PKR++ Sbjct: 168 DASLIREWLGSLHLRQAARSTVVRRGSTLRTFFTWAQEEELVHANPTRGMRTPKRESHLP 227 Query: 172 RPWTKEDMQQF-----KSFWSEGSQPRL-----AFEFLLYSGLRCSDSCRAGVQHLQNNI 221 ++E M Q + + RL E L SG+R S+ +Q + Sbjct: 228 PVLSREQMNQLLTTLQERRAQDPRDARLLRLEAVVEVLYASGMRISELTGLDLQSVDRAN 287 Query: 222 FSIKT-QKTGTIITVEL-PDGFMKLLAMTPIGKE-----------TFFINNDKQKMNATQ 268 +++ K V L L G+ FI + NA Q Sbjct: 288 KTVRVLGKGNKERVVPLGTPALKALNRWVSYGRPQWIPEGSQGVTALFIGPRGGRANARQ 347 Query: 269 FSI-WFKAKATKAGVNKS-AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 + T S AH +R +AT D GA + G ++ + YT Sbjct: 348 IREDLTRLLRTVENTQASGAHVLRHSAATHLVDGGADIRSVQELLGHSSLATTQIYTH-V 406 Query: 327 DRIRLGIKNSR 337 RL +R Sbjct: 407 SMKRLAETYAR 417 >gi|116050518|ref|YP_790663.1| putative integrase [Pseudomonas aeruginosa UCBPP-PA14] gi|115585739|gb|ABJ11754.1| putative integrase [Pseudomonas aeruginosa UCBPP-PA14] Length = 401 Score = 97.8 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 59/297 (19%), Positives = 106/297 (35%), Gaps = 19/297 (6%) Query: 48 MSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKS 106 A + +K T+K L + +++ ++ D +I Sbjct: 77 WLAEVRRGGDPGLDKADARKAPTVKELCGRFMDDHSKPHNKPSTQAGYQYQIDTFVIPAF 136 Query: 107 GDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAI--NPCLSVERP 164 G ++T I + ++ + +P+ A + L+ +R +F A Y NPC V + Sbjct: 137 GTKKVHEVTRNDITALMKRMEKSPTQANRVLSLVRKMFNLAELWGYRPDGSNPCRHVPKY 196 Query: 165 KRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS-------GLRCSDSCRAGVQHL 217 K R T + M + ++ + L LL + R S+ L Sbjct: 197 PEKG-STRLITDDQMVKLFAYLDKAEAENLEHPILLLAVRLQFEFAARMSEILLLQWDWL 255 Query: 218 Q--NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFF----INNDKQKMNATQFSI 271 N KTG + L + + L P ++ + I + +Q ++ + Sbjct: 256 DLPNGRVVWPDSKTGDMSK-PLSEEAKRRLTSAPRYGDSPYVCPAIIDHRQPLSPHTYYQ 314 Query: 272 WFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 ++ + AGV K HG+R SAT A++G MA KTV Y D Sbjct: 315 GWRRILSNAGVPKVGTHGIRHRSATDIANSGVPVKVGMALTAHKTVAMFMRYVHTED 371 >gi|225026538|ref|ZP_03715730.1| hypothetical protein EUBHAL_00787 [Eubacterium hallii DSM 3353] gi|224956152|gb|EEG37361.1| hypothetical protein EUBHAL_00787 [Eubacterium hallii DSM 3353] Length = 354 Score = 97.8 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 61/335 (18%), Positives = 104/335 (31%), Gaps = 36/335 (10%) Query: 11 VTKERTRHGKIIYYFR---KGHGRRIRLPYPH-ESTFIPAYMSALTGSTPKREYINSPRK 66 V K++ HG FR +R ++ Y + S + + Sbjct: 3 VYKDK-AHGTWYTSFRYIDWTGKKRQKMKRGFKTKREALNYENEFKNSVAVEPDMQMDK- 60 Query: 67 KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSG--- 122 + Y S L NS + + + II G+ +IT I Sbjct: 61 -------FVDIYF-SDKKNELKANSIRNKQHMINKHIIPYFGNKKLNEITPADIIQWQKI 112 Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER-PKRKTEGIRPWTKEDMQQ 181 ++ K + + + LF A R + NPC V+R K + + W KE+ + Sbjct: 113 IQENKFSKTYERMIQNQINALFNHAQRIYNLKENPCKKVKRMGKSDADKLDFWIKEEYDR 172 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ---------------NNIFSIKT 226 F S S+ L FE L ++G+R + + + I T Sbjct: 173 FISGVDRKSEDYLMFEILFWTGIREGELLSLTIADFDMTNNLLHINKTYHRIDGKDVIST 232 Query: 227 QKTGTII-TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-K 284 KT + T+ +P+ + + F N + A K K GV Sbjct: 233 PKTDNSVRTIIIPNFLKEEVQEYISYHYGFPENERLFPIVARTLQKRMKRYEKKTGVKPI 292 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319 H +R + G + G K + Sbjct: 293 RVHDLRHSHVAYLINQGVEPLIIKERLGHKNIQIT 327 >gi|161523675|ref|YP_001578687.1| integrase family protein [Burkholderia multivorans ATCC 17616] gi|189351556|ref|YP_001947184.1| tyrosine recombinase [Burkholderia multivorans ATCC 17616] gi|160341104|gb|ABX14190.1| integrase family protein [Burkholderia multivorans ATCC 17616] gi|189335578|dbj|BAG44648.1| tyrosine recombinase [Burkholderia multivorans ATCC 17616] Length = 328 Score = 97.8 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 41/322 (12%), Positives = 91/322 (28%), Gaps = 29/322 (9%) Query: 17 RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76 R+G+ + + + ++ + +++ T L+ Sbjct: 7 RNGRWQVKINRKGFP-TQYRSFATKAEGQVWARSVETAMDDGTWVDPAGTTDVTFGKLLE 65 Query: 77 EYRKSAHWGSLAVNSRISFE----SYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132 YR+S ++ S + K ++ R +T + + R ++ Sbjct: 66 RYRESIT------PTKRSRRSEEYRIGKMLRHKIAEYSMRNLTASLVADYRDQRLKVATN 119 Query: 133 --AIQFLTSMRVLFKWA-VRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS----- 184 + L ++ + A NP V++P+ R ++ + Sbjct: 120 SCVCRELATISAVITHAQREWGLSITNPAKLVKKPRLPPGRNRILKPAELDRLLHELHAE 179 Query: 185 FWSEGSQPRLAFE-FLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTIITVELPDGF 241 S+ L L + +R + +H+ + + K G V L Sbjct: 180 RHELRSRWLLPLAKLALETAMRQGELLSLEWRHVDFDQRTAYLPMTKNGKDRHVPLSSAA 239 Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADA 300 + +L E + + +A + N H +R + T A Sbjct: 240 IAILESLERIDERVI------PITQNVVLCAWPRACKRAAIENFHFHDLRHMATTNLAKK 293 Query: 301 GATAHELMATYGWKTVDQAETY 322 EL + G V Y Sbjct: 294 LPNVIELASVTGHSNVQMLSRY 315 >gi|323480978|gb|ADX80417.1| phage integrase family protein [Enterococcus faecalis 62] Length = 392 Score = 97.8 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 62/392 (15%), Positives = 123/392 (31%), Gaps = 72/392 (18%) Query: 1 MTPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY 60 M R +T GKI +YF+ R E+ AY+ K++ Sbjct: 1 MENMSRFKKHITAT----GKITWYFQAFRTTRRGFNSKREAQL--AYLEMEKQHRNKQKR 54 Query: 61 INS-PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119 + S + + KW EY +S + V + E + R G ++++ + Sbjct: 55 LASNDKFSVVSQKWF--EYYRSLN--EQKVATYDKREEQVKILNRWIGGKKLSSLSSEEL 110 Query: 120 RSGVESRKHT----------PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK-- 167 + + K +S + + ++F + ++ + NP V+ PK + Sbjct: 111 QKFLFILKEKEIDGVNVGYAKNSLQSLVQVLNMVFNYCKKKNLINENPMKFVKMPKYQLS 170 Query: 168 ---------TEGIRPWTKEDMQQFKSF--WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH 216 + + ++++ F ++ E + F L Y+G R S++ Q Sbjct: 171 LKDLKESVNSLEDKFLIVDELRAFLNYGIVYEELPMSVLFHVLFYTGCRVSEALALQPQD 230 Query: 217 LQNNI-----------------FSIKTQKT-GTIITVELPD-------GFMKLLAMTPIG 251 + F I+T KT + V + + +L T Sbjct: 231 IDFERNEILFYKQTAVKGKSKDFRIETTKTVSSARRVPVTPLVMEKLQELIDVLNKTKRN 290 Query: 252 -----KETFFI-----NNDKQKMNATQFSIWFKAKATKAGVNKSAHG--VRKFSATISAD 299 ET+ + K + G+NK H R A++ A+ Sbjct: 291 SNFVVDETYLFVYLDPGKRGVPYRREYVNDHVKRCVERCGINKDFHTHLARHTMASLVAE 350 Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRL 331 + L G ++ Y +L Sbjct: 351 Y-CSWDVLKDRLGHTDSTTSKIYRHLTSTEKL 381 >gi|218134658|ref|ZP_03463462.1| hypothetical protein BACPEC_02561 [Bacteroides pectinophilus ATCC 43243] gi|217990043|gb|EEC56054.1| hypothetical protein BACPEC_02561 [Bacteroides pectinophilus ATCC 43243] Length = 282 Score = 97.8 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 42/274 (15%), Positives = 100/274 (36%), Gaps = 18/274 (6%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK---H 128 K + R A +L + + S +R G + +T + S + +++ Sbjct: 3 KDIFESIRNEAEKRNLRERTIQLYCSDVSYFLRWIG-KNVSDLTLEDAESFLTAKRLEGR 61 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 +P + + ++++ L+K ++ + +V KR+ +++++ Sbjct: 62 SPETHNHYRSAIKFLYKKVLKIVWDDD----TVPAMKRERNLPAVLSRDEINAIIDATP- 116 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL------PDGFM 242 + + + SGLR S+ + +I ++T I D Sbjct: 117 NLKHKAIIATMYSSGLRVSEVVHLHYDDISRTNMTIHVRETKGRIDRYTILSQKNLDLLT 176 Query: 243 KLLAMTPIGKETFFINND-KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299 + K+ F ++ ++ + +FK A AG+N+ S+H R A+ + Sbjct: 177 EYWFKCGRPKDILFPSSWSGGYLDIASVNQFFKKSAKLAGINRHVSSHACRHSFASHLFE 236 Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 +G + + G + Y +++ LGI Sbjct: 237 SGTDIKYIQSLLGHVDPRSTDVYLHVSNKTLLGI 270 >gi|326381298|ref|ZP_08202992.1| phage integrase family protein [Gordonia neofelifaecis NRRL B-59395] gi|326199545|gb|EGD56725.1| phage integrase family protein [Gordonia neofelifaecis NRRL B-59395] Length = 385 Score = 97.8 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 70/365 (19%), Positives = 126/365 (34%), Gaps = 56/365 (15%) Query: 11 VTKERTRHGKIIYYFRK-------GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS 63 +T+ + ++G++ Y FR G R R YP + Y +T Y+ Sbjct: 14 ITRRKAKNGRVSYEFRADVGVKPDGSRDRRRFTYPTKKEAQAEYRR-ITTEVAAGRYVGR 72 Query: 64 PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI---- 119 R T+ + + + N+ ++ I+R G + +++T HI Sbjct: 73 SRV---TVAEHVEAWLAGKR--DVRPNTLRNYTDAAKPIVRDLGGLELQRLTKAHIDKFL 127 Query: 120 --RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT---EGIRPW 174 + + R ++ SA L +R + K A RQ ++ +P VE PK K E + W Sbjct: 128 GGLTRRDGRPYSTDSARLVLAVLRQVTKDAHRQGIISRDPSEFVEPPKAKRVAAENLDVW 187 Query: 175 TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT 234 T+E+ F+ +E L GLR S+ + + + +I + +T Sbjct: 188 TREEANLFRKHTAEDRMAACWLLTL--CGLRRSEVLGLRWRDVDLDAGTITVTQGRVEVT 245 Query: 235 V---------------------ELPDGFMKLLAMTPIGK----------ETFFINNDKQK 263 E+ D L + + + D Sbjct: 246 ATFIDTAEPKTARGRRALPISGEIIDALAALRRLQAAERAEMGCDYAETGLVAVEPDGTP 305 Query: 264 MNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 +S F+ A+ AGV + VR S ++ DAG + A +G Y Sbjct: 306 TLPRTYSDRFRRLASAAGVPPITLRNVRHTSVSVMLDAGVPPTVVAAWHGHDPRMTVSVY 365 Query: 323 TKGAD 327 + D Sbjct: 366 GRTYD 370 >gi|90420213|ref|ZP_01228121.1| tyrosine recombinase XerD [Aurantimonas manganoxydans SI85-9A1] gi|90335547|gb|EAS49297.1| tyrosine recombinase XerD [Aurantimonas manganoxydans SI85-9A1] Length = 328 Score = 97.8 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 34/273 (12%), Positives = 86/273 (31%), Gaps = 33/273 (12%) Query: 85 GSLAVNSRISFESYFDQ----IIRKSGDFDYRKITT-KHIRSGVESRKHTPSSAIQFLTS 139 A N+ ++ + + + G + + +R +S + L++ Sbjct: 34 RGAADNTVAAYRRDLEDAAGFMAGQGGSLMTATTEDIRAYVGRLAARGFAETSRSRRLSA 93 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----------- 188 +R +++ + +P +E +RK + +++++ + + Sbjct: 94 LRQYYRFLYVEGRRGDDPTGPIEGARRKRPLPKVMSEDEVDRLLDRAAAEAVDPERSPAG 153 Query: 189 ---GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN-NIFSIKTQKTGTIITVELPDGFMKL 244 ++ E L +G+R S+ L+ + K V + + Sbjct: 154 LVRAARMHALVELLYATGMRVSELVSLPRAVLRGRQRMIVVRGKGDKERMVPIGEAARDA 213 Query: 245 LAMTPIGKETFFINNDKQ----------KMNATQFSIWFKAKATKAGVNK---SAHGVRK 291 L + ++ + + + F+ KA A + G+ S H +R Sbjct: 214 LIRFAEAMKLAGVSEEGRWLFPAVSETGHLTRQAFARDLKALAAREGIPAERISPHVLRH 273 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTK 324 A+ GA + G + + YT Sbjct: 274 AFASHLLQNGADLRAVQELLGHADISTTQIYTH 306 >gi|15643727|ref|NP_228775.1| integrase-recombinase protein [Thermotoga maritima MSB8] gi|222100583|ref|YP_002535151.1| Integrase-recombinase protein [Thermotoga neapolitana DSM 4359] gi|4981505|gb|AAD36046.1|AE001759_10 integrase-recombinase protein [Thermotoga maritima MSB8] gi|221572973|gb|ACM23785.1| Integrase-recombinase protein [Thermotoga neapolitana DSM 4359] Length = 253 Score = 97.8 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 42/254 (16%), Positives = 83/254 (32%), Gaps = 32/254 (12%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES-RKHTPSSAIQFLTSMRVL 143 + + + S + R + IT + + + + K+ P++ L ++ Sbjct: 12 KKRSERTLYQYRSILREFTR------FEPITPETWKEYLNTISKNAPATQRNKLVVVKNY 65 Query: 144 FKWAVRQEYVAI-----NPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEF 198 W + + N P R T + +++++ R F+ Sbjct: 66 LNWRADRGLLNAEERFWNEAE----PPRHTVLPKAIELDEVRRIIEACDNPLY-RAIFKV 120 Query: 199 LLYSGLRCSDSCRAGVQHLQNN---IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF 255 L +G+R S+ V + N IK + I + + ++ L F Sbjct: 121 LANTGMRVSEIVNLSVHDISVNETARIRIKGKGNKERI-INVSKELVEELM-----NSGF 174 Query: 256 FINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGW 313 F +K + K A KAG+ K + H R A + G +++ A G Sbjct: 175 FE----KKPSVRSIQRAVKRYARKAGIKKKVTPHIFRHSFAVALIERGVPLNKIQALLGH 230 Query: 314 KTVDQAETYTKGAD 327 + Y K A Sbjct: 231 ANISTTSIYLKIAS 244 >gi|326791706|ref|YP_004309527.1| integrase family protein [Clostridium lentocellum DSM 5427] gi|326542470|gb|ADZ84329.1| integrase family protein [Clostridium lentocellum DSM 5427] Length = 384 Score = 97.8 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 57/370 (15%), Positives = 114/370 (30%), Gaps = 71/370 (19%) Query: 15 RTRHGKIIY-YFRKGHGRRIRLPYPHESTFIPAYM--SALTGSTPKREYINSPRKKPTTL 71 R +G Y YFR + ++ + AY AL G + + TL Sbjct: 29 RNANGTKKYKYFRAKTKKELKAK-------VDAYKMDVALNGKPLDKTTV--------TL 73 Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKS-GDFDYRKITTKHIRSGVESRKHT 129 + ++ +A + + + ++ I GD + IT I+ ++ Sbjct: 74 SEWVYQFLFVHVIHEVAPTTFHRYVNLYEVHIKDSYIGDIGLQCITHTQIQRYFNNKTDK 133 Query: 130 PSSAIQFLTSM-RVLFKWAVRQEYVAINPCLSVERPKRKTEG--IRPWTKEDMQQFKSFW 186 + +Q + ++ FK A+ ++ NP + PK E I+ T ++ ++ Sbjct: 134 AKATLQKIKNLLNKAFKSAIHNNFIRYNPMDGIIIPKTAKEAKEIKILTTQEQLRYIE-A 192 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ------------------- 227 S+ L LY+G+R + +++ +I + Sbjct: 193 SKAEPNGLFLRLALYTGMRLGEVLALKWENVDLEQGTITVKESMKRSRVYSDDGNFIVED 252 Query: 228 -----KTGTIIT-VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281 KT I + +PD ++ L F N + + T A Sbjct: 253 VIKEPKTKKGIRLIYIPDILIEELKQIEKEDGLVFDTN------ESTVNHMHDRICTAAK 306 Query: 282 VN---------------KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKG 325 +N H +R AT + + G K + Y+ Sbjct: 307 INPNKVYKGETATTVYGVGIHALRHTLATRLLENNVNIKYVSDILGHKNITTTYNIYSHV 366 Query: 326 ADRIRLGIKN 335 D + + Sbjct: 367 LDDSKREVAT 376 >gi|322832185|ref|YP_004212212.1| integrase family protein [Rahnella sp. Y9602] gi|321167386|gb|ADW73085.1| integrase family protein [Rahnella sp. Y9602] Length = 328 Score = 97.8 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 63/304 (20%), Positives = 101/304 (33%), Gaps = 20/304 (6%) Query: 29 HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP--RKKPTTLKWLISEYRKSAHWGS 86 GRRIR + Y + + +E++ P R+K T L L Y H Sbjct: 21 EGRRIR-RKFNTKGEAQIYERHVLVNYHNKEWLEKPADRRKLTDLLELWWLYHGKHHNRG 79 Query: 87 LAVNSRISFESYFDQIIRKSGDFDYRKITTK---HIRSGVESRKHTPSSAIQFLTSMRVL 143 L S + G +IT K R + + P+S + + Sbjct: 80 LIE---KGRLSAIMIKFAEIGVTRADQITKKAITDYRVKMMNEGLKPASVNRHQAIFSGM 136 Query: 144 FKWAVR-QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS 202 F + EY + +P V++ K + + E++ Q R A L + Sbjct: 137 FTKLIDANEYHSEHPFRGVKKLKEAEPEMAFLSTEEITQLLDMLE--GDNRNAVLLCLAT 194 Query: 203 GLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ 262 G R S+ +H+ N + + K G T+ L +G +K++ GK F Sbjct: 195 GGRWSEVADLKAEHIINCMLTFMKTKNGRRRTIPLSEGLVKMVKKRSTGK--LFT----- 247 Query: 263 KMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 N +A ++ H +R AT G L G TV Q Y Sbjct: 248 -PNYDTVRNTLRAMKPDLPAGQAVHVLRHTFATHFMMNGGNIITLQRILGHSTVQQTMVY 306 Query: 323 TKGA 326 A Sbjct: 307 AHFA 310 >gi|125624456|ref|YP_001032939.1| putative integrase/recombinase [Lactococcus lactis subsp. cremoris MG1363] gi|124493264|emb|CAL98231.1| putative integrase/recombinase [Lactococcus lactis subsp. cremoris MG1363] gi|300071244|gb|ADJ60644.1| putative integrase/recombinase [Lactococcus lactis subsp. cremoris NZ9000] Length = 324 Score = 97.8 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 43/303 (14%), Positives = 99/303 (32%), Gaps = 45/303 (14%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR---KSGDFDYRKITTKHIRSGVESR 126 +++ I E L+ N+ I E ++ + +I HI+ + R Sbjct: 4 SIQSAIQEMLFDNKARGLSKNTIIFREKILKIFSVFLCQNDILNINEIKPIHIKQYLVDR 63 Query: 127 ---KHTPSSAIQFLTSMRVLFKWAVRQEYV--AINPCLSVERPKRKTEGIRPWTKEDMQQ 181 ++ ++ L +R LF + + +EY+ P V+ K K + +T ++++ Sbjct: 64 LECGYSETTVNGHLRVIRALFSYCINEEYIRYEEAPIHRVKWIKEKKMIVNTFTDSEIKR 123 Query: 182 FKSFWSEGS---------------------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNN 220 + + + + L L +G+R +++ ++++ ++ Sbjct: 124 MLHYTRKRTFHTIKKTGKGRTGFCTKFVNERNYLLILILTDTGMRINEALSLKLENINDS 183 Query: 221 IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFI------------NNDKQKMNA-- 266 IK K V K KE +F+ +K + Sbjct: 184 QIIIKNGKGKKDRIVHCSPLVYKQYLKYNRAKENYFLSNGIVPIENIFVTKFGKKYDYRL 243 Query: 267 --TQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 + KA + + S H R + A + + G ++ E Y + Sbjct: 244 AEKEIYKIGKAVNIRDTIRISPHTFRHYFAQKLVRENVDIYMIQKLLGHASIKTTEIYLR 303 Query: 325 GAD 327 + Sbjct: 304 SLN 306 >gi|321271757|gb|ADW79844.1| IncI1 shufflon-specific DNA recombinase Rci [Escherichia coli] Length = 397 Score = 97.4 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 47/282 (16%), Positives = 94/282 (33%), Gaps = 27/282 (9%) Query: 61 INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120 + SPR + +L + +Y K+ + + + +ITT I Sbjct: 14 MPSPRIRKMSLSRALDKYLKTVSVHKKGHQQEFYRSNVIKRY--PIALRNMDEITTVDIA 71 Query: 121 SGVESR----------KHTPSSAIQFLTSMRVLFKWA-VRQEYVAINPCLSVERPKRKTE 169 + + R T ++ L + LF A V NP V +PK + Sbjct: 72 TYRDVRLAEINPRTGKAITGNTVRLELALLSSLFNIARVEWGTCRTNPVELVRKPKVSSG 131 Query: 170 GIRPWTKEDMQQFKSFWSE-GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKT 226 R T + ++ ++ E + F L + +R + +H+ + + Sbjct: 132 RDRRLTSSEERRLSRYFREKNLMLYVIFHLALETAMRQGEILALRWEHIDLRHGVAHLPE 191 Query: 227 QKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM--NATQFSIWFKAKATKAGV-N 283 K G V L L M P +N A+ F ++ + + + Sbjct: 192 TKNGHSRDVPLSRRARNFLQMMP-------VNLHGNVFDYTASGFKNAWRIATQRLRIED 244 Query: 284 KSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTK 324 H +R + + + G E+ A G ++++ + YT Sbjct: 245 LHFHDLRHEAISRFFELGSLNVMEIAAISGHRSMNMLKRYTH 286 >gi|296446709|ref|ZP_06888649.1| integrase family protein [Methylosinus trichosporium OB3b] gi|296255830|gb|EFH02917.1| integrase family protein [Methylosinus trichosporium OB3b] Length = 423 Score = 97.4 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 56/353 (15%), Positives = 107/353 (30%), Gaps = 45/353 (12%) Query: 26 RKGHGRRIRLPYPHESTFIPAYMSALT-----GSTPKREYINSPRKKPTTLKWLISEYRK 80 R G +++++ +T A AL + + T + + ++ Sbjct: 51 RNGRSQKVKIGVFGPTTAEQARAQALNLLGAIEAGADPVAERRAARAVRTFRQVAEDFMA 110 Query: 81 SAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139 + S+ D ++ + G +I + + TP A ++ Sbjct: 111 QHVLTKRKPRTAESYRCLLDKYVLPELGAKRIVEIGRADVARLHSNLGTTPRQANAAVSV 170 Query: 140 MRVLFKWAVRQEYVA--INPCLSVERP----------------------KRKTEGIRPWT 175 + ++ WA R+E NP +ER + +TEGI PW Sbjct: 171 ISAIWGWAARREETEFGKNPATRLERFPERRWERYLSSEEMGRLGKALQRAETEGI-PWM 229 Query: 176 KEDMQQFKSFWSEGSQ------PRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQ 227 E+ Q E + A L+ +G+R + H+ + Sbjct: 230 DEEPQSKHGVKPENRRSIFDPFAVAAIRLLILTGMRPREVLNLEWGHVDFERGALFLPDS 289 Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINND---KQKMNATQFSIWFKAKATKAGVNK 284 KTG + L + + K F I K + + + + + A GV Sbjct: 290 KTGRKTVILGGPALRVLSELPRVEKCPFVIAGRSLEKPRADLNRPWVAVRRYAKLEGV-- 347 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIKNS 336 + +R A++ A A + G Y AD +R Sbjct: 348 RLYDLRHSFASVGAGASLGLPIVGKLLGHSQPATTNRYAHLDADPLRHAANAI 400 >gi|256838718|ref|ZP_05544228.1| tyrosine type site-specific recombinase [Parabacteroides sp. D13] gi|256739637|gb|EEU52961.1| tyrosine type site-specific recombinase [Parabacteroides sp. D13] Length = 406 Score = 97.4 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 46/275 (16%), Positives = 99/275 (36%), Gaps = 26/275 (9%) Query: 90 NSRISFE---SYFDQIIRK---SGDFDYRKITTKHIRSGVESRKH----TPSSAIQFLTS 139 + +E Y ++ I+K D + I K +SAI L + Sbjct: 132 KTVQRYETTTRYLEEFIKKEYQLPDIALNNLEANFISKFDAFLKIEKGCAQNSAITRLKN 191 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQPRLAF 196 ++ + + A+ +++ +P + R K + T ++++ + Q R F Sbjct: 192 LKKIIRIALENDWIKKDP-FAYYRFKLEETDPEFLTMDEIKIILAKEFTIKRVEQVRDVF 250 Query: 197 EFLLYSGLRCSDSCRAGVQH-LQNN----IFSIKTQKTGTIITVELPDGFMKLLAMTPIG 251 F +++GL SD +H +++N QKT + + + +L Sbjct: 251 VFCIFTGLAFSDVKDLSPEHLVKDNKGELWIRKNRQKTKIMCNIPVLPVAASILDKYKDV 310 Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS-ADAGATAHELM 308 E ++ + + + K A G++K S H R AT G + + Sbjct: 311 AE--CTGKLLPVLSNQRMNSYLKEIADVCGIHKNLSTHTARHSYATSICLANGVSMENVA 368 Query: 309 ATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343 G + Y + D+ K+ ++++S + Sbjct: 369 KMLGHADTSVTKHYARVLDQN--IFKDMQKVNSCL 401 >gi|253569672|ref|ZP_04847081.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] gi|251840053|gb|EES68135.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] Length = 371 Score = 97.4 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 45/290 (15%), Positives = 95/290 (32%), Gaps = 35/290 (12%) Query: 76 SEYRKSAHWGSLAVNSRISFESYFDQIIRK--------SGDFDYRKITTK---------- 117 +Y+ A + R + + G + +I Sbjct: 87 DKYKLKADFLEY---YRKQLRKHDQKWEFVYLHFSNFVHGKCTFEEIDIDLCNKFREYLL 143 Query: 118 HIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177 + + + T +SA + ++ R K R + N +E+ + + + E Sbjct: 144 SAKKLRRNGRITRNSASGYWSTFRGFLKILYRNGMIKTNVNDFLEKIETEDVMKEALSVE 203 Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL-----QNNIFSIKTQKTGTI 232 ++ + + + A F + LR SD + + I TQK Sbjct: 204 ELYKLAETPCKKPILKTASLFSCMTSLRISDILSLCWKDIVDYSAGGKCVHIITQKNKAE 263 Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290 + + + + L+ K F + + + I K AG+ K + H R Sbjct: 264 DIIPISEEALGLIGYNSEKKGLVF-----KGLMRSWTQIPMKEWIRSAGITKNITFHSYR 318 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340 + AT+ A AG + + K++ + Y K D + + S++I+ Sbjct: 319 RTFATLQAAAGTDIRTIQSIMAHKSITTTQRYIKVVDANKR--EASKKIT 366 >gi|220935034|ref|YP_002513933.1| integrase family protein [Thioalkalivibrio sp. HL-EbGR7] gi|219996344|gb|ACL72946.1| integrase family protein [Thioalkalivibrio sp. HL-EbGR7] Length = 401 Score = 97.4 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 59/297 (19%), Positives = 106/297 (35%), Gaps = 19/297 (6%) Query: 48 MSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKS 106 A + +K T+K L + +++ ++ D +I Sbjct: 77 WLAEVRRGGDPGLDKADARKAPTVKELCGRFMDDHSKPHNKPSTQAGYQYQIDTFVIPAF 136 Query: 107 GDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAI--NPCLSVERP 164 G ++T I + ++ + +P+ A + L+ +R +F A Y NPC V + Sbjct: 137 GTKKVHEVTRNDITALMKRMEKSPTQANRVLSLVRKMFNLAELWGYRPDGSNPCRHVPKY 196 Query: 165 KRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS-------GLRCSDSCRAGVQHL 217 K R T + M + ++ + L LL + R S+ L Sbjct: 197 PEKG-STRLITDDQMVKLFAYLDKAEAENLEHPILLLAVRLQFEFAARMSEILLLQWDWL 255 Query: 218 Q--NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFF----INNDKQKMNATQFSI 271 N KTG + L + + L P ++ + I + +Q ++ + Sbjct: 256 DLPNGRVVWPDSKTGDMSK-PLSEEAKRRLTSAPRYGDSPYVCPAIIDHRQPLSPHTYYQ 314 Query: 272 WFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 ++ + AGV K HG+R SAT A++G MA KTV Y D Sbjct: 315 GWRRILSNAGVPKVGTHGIRHRSATDIANSGVPVKVGMALTAHKTVAMFMRYVHTED 371 >gi|301058430|ref|ZP_07199451.1| site-specific recombinase, phage integrase family [delta proteobacterium NaphS2] gi|300447486|gb|EFK11230.1| site-specific recombinase, phage integrase family [delta proteobacterium NaphS2] Length = 399 Score = 97.4 bits (241), Expect = 3e-18, Method: Composition-based stats. Identities = 60/330 (18%), Positives = 101/330 (30%), Gaps = 42/330 (12%) Query: 19 GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR--------KKPTT 70 GK Y F R R + + AL KR +N+P Sbjct: 63 GKWKYKFEFQKKRYKREGFKTQKE-------ALLAEAGKRTLVNAPSLGLMELEEPPSGY 115 Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130 L+ I Y K + N+ ++ GD I I + +E R + Sbjct: 116 LEETILNYLKYCKKRKMRSNTIRQKYFVLSNFVKSIGDKPVELIRKSDIEAYLELRIDSG 175 Query: 131 SSA-IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI--RPWTKEDMQQFKSFWS 187 S + L +R +F W +E + NP +E+ E P++ + + Sbjct: 176 KSTFNRDLRDIRAMFNWYYGREGIFHNPANDIEKIGEDVELRYVPPFSDIVAVKLMATRD 235 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN-----NIFSIKTQKTGTIITVE--LPDG 240 EG E + Y+GLR ++ R + I + +K GT+ + Sbjct: 236 EGD----FLETIFYAGLRRIEAIRLLWSRDVDFESRTLISWTRKRKNGTLTPKPKAITKT 291 Query: 241 FMKLL-----AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSA 294 L + F + + + K KAGV H +R A Sbjct: 292 LYTALKNRYERRNKLDDRVF-------QFSVEYLNDMMKRLCEKAGVQHFGLHALRHLGA 344 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTK 324 +I + G + + TY Sbjct: 345 SILLSENVPLPAVQEYLGHERITTTNTYAH 374 >gi|254796806|ref|YP_003081643.1| site-specific recombinase, phage integrase family [Neorickettsia risticii str. Illinois] gi|254590046|gb|ACT69408.1| site-specific recombinase, phage integrase family [Neorickettsia risticii str. Illinois] Length = 307 Score = 97.4 bits (241), Expect = 3e-18, Method: Composition-based stats. Identities = 49/278 (17%), Positives = 100/278 (35%), Gaps = 33/278 (11%) Query: 75 ISEYRKSAHWGSLAVNSRISFES----YFDQIIRKSGD----FDYRKITTKHIRSGVESR 126 + + S + N+ +++ + D + G+ I K +R+ + SR Sbjct: 16 WTRWLGSV--KCFSSNTLVAYSRDTIAFLDFLSTFRGESVNCASLEGIDDKDLRAWLASR 73 Query: 127 KH---TPSSAIQFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM--- 179 + + + + L+S++ F++ A + + L V + R T +++ Sbjct: 74 RKNSISFRTNARALSSVKSFFRYLAKHNGIINED-VLGVVLRFKPNTLPRSLTFKEIIEL 132 Query: 180 -QQF---KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235 ++F K+ W L + L SGLR S++ V L N I K + Sbjct: 133 IEKFSFLKTGWIVKRNIALCY-LLYGSGLRISEALSLTVADLANTEIKIM-GKGSRERMI 190 Query: 236 ELPD----GFMKLLAMTP---IGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSA 286 L +A P G F++ + K+ T + F + + + + + Sbjct: 191 RLLPIVRVALADYIASCPFQLDGGGFLFLDRNGNKLCRTAVAGAFLSIRRRFNLSNHITP 250 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R AT G ++ G ++ YTK Sbjct: 251 HALRHSFATHLLQEGVGVRKIQELLGHASLASTAVYTK 288 >gi|291545712|emb|CBL18820.1| Site-specific recombinase XerD [Ruminococcus sp. SR1/5] Length = 322 Score = 97.4 bits (241), Expect = 3e-18, Method: Composition-based stats. Identities = 38/248 (15%), Positives = 83/248 (33%), Gaps = 14/248 (5%) Query: 88 AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES----RKHTPSSAIQFLTSMRVL 143 + + ++ + ++ + RKITT+ IR+ + K + + ++ Sbjct: 61 SERTIQYYKVTVEHLLSHI-ETSVRKITTEEIRTYLAEYQKNNKCSNVTVDNIRRNISSF 119 Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSG 203 F W ++Y+ +P + + K KT T E +++ + E + + L +G Sbjct: 120 FSWLEEEDYILKSPMKRIHKIKTKTVVKSVITDEGIERLRDNCKE-IRDLAIIDLLYSTG 178 Query: 204 LRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDG----FMKLLAMTPIGKETFFIN 258 +R + V + I K V + +A F+ Sbjct: 179 IRVGELVNLNVDDIDLEGRECIVYGKGDKERRVYFDAKAKVHLKEYIAHRKDNNSALFVT 238 Query: 259 NDKQK--MNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKT 315 D + + I + + + + H R+ AT + D G ++ G Sbjct: 239 LDAPHDRLKISGVEIRLRELGKRIDLERIHPHKFRRTMATRAIDKGMPIEQVQKILGHSQ 298 Query: 316 VDQAETYT 323 +D Y Sbjct: 299 IDTTMQYA 306 >gi|253575298|ref|ZP_04852636.1| integrase [Paenibacillus sp. oral taxon 786 str. D14] gi|251845295|gb|EES73305.1| integrase [Paenibacillus sp. oral taxon 786 str. D14] Length = 344 Score = 97.4 bits (241), Expect = 3e-18, Method: Composition-based stats. Identities = 47/281 (16%), Positives = 93/281 (33%), Gaps = 42/281 (14%) Query: 86 SLAVNSRISFESYF----DQIIRKSGDFDY-----RKITTKHI------RSGVESRKHTP 130 L + + + ++ D + D +Y ++ HI R+ E K+ P Sbjct: 40 GLRERTLVDYAKHYGYFVDWLREAHADVEYVDEVTTQMVRDHISYLKYDRTRYEGHKYIP 99 Query: 131 S----------SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 + + L +++ +F R + + +NP V+ ++ + T ++++ Sbjct: 100 TKDQRVGLSDTTINIRLRTLKAIFNQLERDDLIEVNPLAKVKLLRQDVDLTNCLTDDEVK 159 Query: 181 QFKS----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQ--KTGTI 232 + G + + LL SGLR S+ + + + + K Sbjct: 160 AILAQPNRRDFVGFRDYVGIVTLLDSGLRISELLKLRAGDIDFQTRFIVLPGEMNKNRKP 219 Query: 233 ITVELPDGFMKLLAMTPIGKETFFINND------KQKMNATQFSIWFKAKATKAGV---N 283 V + KLL FF + + ++ F+ K KAGV Sbjct: 220 RMVPISAHTAKLLLQLIEENRQFFSTDRLFMSSFGEPISPNHFNKRLKYYGEKAGVAGKK 279 Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 +AH R A GA + GW + Y + Sbjct: 280 MTAHVYRHTWARAMVLNGADPFTIQKMGGWADMRTMRRYVQ 320 >gi|239907103|ref|YP_002953844.1| site-specific recombinase [Desulfovibrio magneticus RS-1] gi|239796969|dbj|BAH75958.1| site-specific recombinase [Desulfovibrio magneticus RS-1] Length = 409 Score = 97.4 bits (241), Expect = 3e-18, Method: Composition-based stats. Identities = 55/329 (16%), Positives = 90/329 (27%), Gaps = 39/329 (11%) Query: 26 RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWG 85 R R + + A G E P T L Y W Sbjct: 59 RILGEIRQNIRRGTGPQSLRDMARAARGEADAAE------AAPLTFGELARRYL---DWA 109 Query: 86 SLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKH----TPSSAIQFLTSM 140 +S E +++ +T ++ +P + L + Sbjct: 110 KRNKSSWKEDEYLLAKRVLPLFAHRPATSLTRTDTEQFRDALLDAGGLSPMTIKHHLVVI 169 Query: 141 RVLFKWA------VRQEYV---AINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191 R ++ WA ++ NP + P E IR T+E+ + E Sbjct: 170 RRVYNWAASTPVADDPGHMLFEGRNPVSGIRMPLVDNERIRFLTREEADRLLEAAGERLP 229 Query: 192 P-RLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSI----KTQKTGTIITVELPDGFMKL 244 L +G+R + Q + N I SI K ++ M Sbjct: 230 EMHDIILLALLTGMRRQEILGLMWQDVDLVNRIISIPARLTRAKRSRKAFLDEETAAMLQ 289 Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS---------AHGVRKFSAT 295 F + + + F A G+N H +R A+ Sbjct: 290 ARREHAQSPFVFPGAVDGRRDPDHVTRQFDALVNGIGLNNGVTDPKHKVVFHTLRHTFAS 349 Query: 296 ISADAGATAHELMATYGWKTVDQAETYTK 324 A AGA H LM G K++ + Y Sbjct: 350 WLAQAGADIHHLMELTGHKSISTMQRYAH 378 >gi|237743743|ref|ZP_04574224.1| DNA integration/recombination/invertion protein [Fusobacterium sp. 7_1] gi|229432774|gb|EEO42986.1| DNA integration/recombination/invertion protein [Fusobacterium sp. 7_1] Length = 343 Score = 97.4 bits (241), Expect = 3e-18, Method: Composition-based stats. Identities = 46/277 (16%), Positives = 103/277 (37%), Gaps = 14/277 (5%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129 T K + + + +++ + + + ++ D + + ++ + Sbjct: 66 TFKDVKDLWYSNYS-KTVSDVTLRNVGNQLKKL-EVFNDEKIKDLKLYTLQKFFDDLDSA 123 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE-GIRPWTKEDMQQFKSFWSE 188 S + +++ ++F++A++ E++ N +E K + + +T +++ Sbjct: 124 YGSKLALRSALNMIFEFALKNEFIETNRIKFIELGKNEKVVERKIFTTDEINILFDNLDS 183 Query: 189 GSQ----PRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIIT-VELPDGF 241 ++ A L+Y+GLR + + + NNI SI KT I V + + Sbjct: 184 DNRFIKKMSYATLILIYTGLRIGELMNLKTEDVDLKNNILSIVESKTIAGIRKVPISEKI 243 Query: 242 MKL-LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISAD 299 + L KE F N + N F F+ + + H R AT+ + Sbjct: 244 INLFKDNIDYSKEYFLYNKKGGQYNYVNFFQQFQTMLELLNLERHTIHDTRHTFATLLNN 303 Query: 300 AGATAHELMATYGWKTVDQAE-TYT-KGADRIRLGIK 334 A A + ++ G E YT K + +R + Sbjct: 304 ANANSTSIIKLIGHSDFSMTENVYTHKDIEELRKAVN 340 >gi|261337550|ref|ZP_05965434.1| tyrosine recombinase [Bifidobacterium gallicum DSM 20093] gi|270277960|gb|EFA23814.1| tyrosine recombinase [Bifidobacterium gallicum DSM 20093] Length = 329 Score = 97.4 bits (241), Expect = 3e-18, Method: Composition-based stats. Identities = 40/302 (13%), Positives = 91/302 (30%), Gaps = 48/302 (15%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESR 126 ++ EY + L+ N+ ++ + G + ++TT +R + Sbjct: 11 FAPMVEEYARYLRANMGLSENTVRAYAKDAVRCCTALHAMGISGFEQVTTDALRDWMAQE 70 Query: 127 KH--TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 + +S + ++R F W A +P ++ PK ++ Q Sbjct: 71 AQITSRTSLARRTVAVRRFFGWMAEHGKTATDPAAALHIPKAAHYLPDVLNEQQAQTLME 130 Query: 185 F------------------------------WSEGSQPRLAFEFLLYSGLRCSDSCRAGV 214 + + E L +G+R ++ + Sbjct: 131 QVDDEAGARGAVAQPQADGEQHDGKAQTPQQHALAQRDCAMVELLYATGIRVAELTGLNM 190 Query: 215 QHLQNNIFSIKTQKTGTIIT-----VELPDGFMKLLA------MTPIGKETFFINNDKQK 263 + + +I+ G + + + F+ + + Sbjct: 191 ADVHADNRTIRVTGKGNKQRVVPYGIPAQRALDAWMEHGRAVLAAVSSGDALFLGSRGGR 250 Query: 264 MNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 ++ +A +AGV + S H +R +AT D GA E+ G ++ + Y Sbjct: 251 IDQRIVREVVHREAQRAGVPDISPHALRHSAATHLLDGGADLREVQEMLGHSSLRTTQRY 310 Query: 323 TK 324 T Sbjct: 311 TH 312 >gi|187933384|ref|YP_001886557.1| tyrosine recombinase XerD [Clostridium botulinum B str. Eklund 17B] gi|187721537|gb|ACD22758.1| tyrosine recombinase XerD [Clostridium botulinum B str. Eklund 17B] Length = 292 Score = 97.4 bits (241), Expect = 3e-18, Method: Composition-based stats. Identities = 30/226 (13%), Positives = 75/226 (33%), Gaps = 15/226 (6%) Query: 112 RKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171 K+T + + S + + S+R + + Q + P + + K + Sbjct: 47 DKLTVMAYIQYLLESGKSERSINRIVISLRSFYSYLKSQSLINEVPKIEYKSSKNNRKLP 106 Query: 172 RPWTKEDMQQF----KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-T 226 + T +++ + + +G + E + +G++ S+ V + + ++ T Sbjct: 107 QILTVDEVDKIIRTVEKDCPKGIRDNALLELMYATGMKVSELISLNVDDINLELHFVRCT 166 Query: 227 QKTGTIITVELPDGFMKLL--------AMTPIGKETFFINNDKQKMNATQFSIWFKAKAT 278 + + + L + G F+N + K+ K + Sbjct: 167 DSRNFERLIPIGRSACRALNEYLSIRYKIAECGVPNLFVNLNGNKLTRQGIWRIVKEYSK 226 Query: 279 KAGVNKS--AHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 +A ++K + R A GA + G + + +TY Sbjct: 227 RAHIDKDVNLNTFRHSFAVHLLQNGANVRAVQKLLGNQVLTYMDTY 272 >gi|239906070|ref|YP_002952809.1| site-specific recombinase [Desulfovibrio magneticus RS-1] gi|239795934|dbj|BAH74923.1| site-specific recombinase [Desulfovibrio magneticus RS-1] Length = 398 Score = 97.4 bits (241), Expect = 3e-18, Method: Composition-based stats. Identities = 51/312 (16%), Positives = 100/312 (32%), Gaps = 30/312 (9%) Query: 58 REYINSPRKKPTTLKWLISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITT 116 +E T+ L Y ++ V R +E + ++ + Sbjct: 82 KEIARDRAMTDRTIAELADAYFEAKGDALKGVVTDRNRYEKHVRPLLGGFRASKLSPLDM 141 Query: 117 KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS--VERPKRKTEGIRPW 174 +R +E R ++ L +R + + + P L+ +E PK+ E + Sbjct: 142 ARLRKTMEGRAA--ATVWNVLELVRRIVNFGTKAGLC---PALTFTIEMPKKDNEVVEYL 196 Query: 175 TKEDMQQFKSF---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKT 229 E + K+ W R E ++SG+R + + ++ L + SI+ K Sbjct: 197 EPEQAARLKAVLDEWPSRDAAR-MLEVAMFSGMRRGEVFKLRIRDLDFRAGLISIRDPKG 255 Query: 230 GTIITVELPDGFMKLLA-------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282 G ++V + L F D + A + K AG+ Sbjct: 256 GKTVSVPMNPITRAALEDQLAWKEEAFPDSSYVFPGKDGAQRVACSAASRIKQA---AGI 312 Query: 283 NKSA---HGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGA--DRIRLGIKNS 336 HG+R A A++G T + K+ Y + + R K + Sbjct: 313 PARFRIFHGLRHHFAVTLANSGEFTLDMIGELLTHKSTAMTRRYGQFLPDAKKRASDKAA 372 Query: 337 RRISSVVDSDDP 348 +++ P Sbjct: 373 ELLTNHAGLGKP 384 >gi|154487218|ref|ZP_02028625.1| hypothetical protein BIFADO_01059 [Bifidobacterium adolescentis L2-32] gi|154085081|gb|EDN84126.1| hypothetical protein BIFADO_01059 [Bifidobacterium adolescentis L2-32] Length = 287 Score = 97.4 bits (241), Expect = 3e-18, Method: Composition-based stats. Identities = 56/292 (19%), Positives = 107/292 (36%), Gaps = 21/292 (7%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH- 128 T+ +I+ + L +R + S + +R D + K V + Sbjct: 3 TVSDMIAGFLA-----GLTPGTRAGYRSVVSRWLRWCADNGIDMLRAKRTHIEVFAAYDG 57 Query: 129 --TPSSAIQFLTSMRV---LFKWAVRQEYVAINPCLSVERPKRKTEGIRP-WTKEDMQQF 182 P++ ++ V L+++ + Y+ NP V RPK T+E + F Sbjct: 58 GMRPAAKNTVCRNLSVVCCLYRYLCEEGYIDCNPGEHVRRPKLYGHSDGTYLTREQARLF 117 Query: 183 KSFWS-EGSQPRLAFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSIK-TQKTGTIITVELP 238 + G++ LL +G R ++ V+ HL + ++ +K V +P Sbjct: 118 LTEARGMGARTDALCSLLLLTGARVGEALGLDVEDCHLNDGRPWVRFDRKGDWSQRVAIP 177 Query: 239 DGFMKLLAMTP--IGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSAT 295 + LA + F + ++ + A + GV + S H +R+ T Sbjct: 178 SDAAEALARLIGERRRGAVFREDSGARLRQQTAVGIVSSVALRVGVPDISPHSLRRTFCT 237 Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347 +S DAG ++MA GW + + Y R L K + + +D Sbjct: 238 LSRDAGVPDRDIMAAGGWNSPQMLDYY--DMSRRGLNGKAGDGLQDYLGEED 287 >gi|322384294|ref|ZP_08058003.1| phage integrase-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321150942|gb|EFX44368.1| phage integrase-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 413 Score = 97.4 bits (241), Expect = 3e-18, Method: Composition-based stats. Identities = 50/334 (14%), Positives = 108/334 (32%), Gaps = 58/334 (17%) Query: 65 RKKPTTLKWLIS-----EYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKH 118 + + TLK I +Y +L+ + ++ + + I+ G I T H Sbjct: 71 KPEKMTLKQFIENEWEPKYASKP--KNLSPLTYKTYMHHIENHIMPTFGHKFLGDIKTLH 128 Query: 119 IRSGVESRKH------------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166 I + ++ +P + ++ + A + + NP + V++PK Sbjct: 129 IVTFIDDLGKPGSRKDNKGDTLSPGTIQFIYRVLKNILTRATEWQLIKSNPTVGVKKPKV 188 Query: 167 -KTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFS 223 +T+ KE + K+ + E + RL + G R + + N S Sbjct: 189 EQTQLDFYDEKEAREVIKALYQEPRRWRLLILGAMLGGCRRGELVGLEWSDVDFENKTIS 248 Query: 224 IK---------------TQKTGTIITVELPDGFMKLLAMTPI----------------GK 252 I+ + +I T+++P +M L + Sbjct: 249 IRKSISLTVDSRAIEKEPKSKSSIRTIDMPQWYMVELKEYEREWKKEKLSVGDKWIGGDR 308 Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATY 311 F + + S W+ + + + H +R SAT+ +AGA+ + Sbjct: 309 RYVFHAGLGKPYFYSYPSEWWSKFIKRHDLKRVRFHDLRHSSATLLIEAGASMKAIQQRL 368 Query: 312 GWKT-VDQAETYTKGADRIRLGIKNSRRISSVVD 344 G A+ Y ++ + + + Sbjct: 369 GHSKHQTTADVYAHVT--KKVSRETAEKFDKFAP 400 >gi|227503375|ref|ZP_03933424.1| site-specific tyrosine recombinase XerC [Corynebacterium accolens ATCC 49725] gi|227075878|gb|EEI13841.1| site-specific tyrosine recombinase XerC [Corynebacterium accolens ATCC 49725] Length = 305 Score = 97.4 bits (241), Expect = 3e-18, Method: Composition-based stats. Identities = 41/266 (15%), Positives = 84/266 (31%), Gaps = 22/266 (8%) Query: 85 GSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMR 141 A + + + + I DF+ + + + + V K + A + S++ Sbjct: 32 KGRAEATVRGYRADLKNLAQDIDTFADFNLNNL-RQWLGNAVAEGKARATLARRT-ASVK 89 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM-----QQFKSFWSEGSQPRLAF 196 WA R+ Y+ + + PK + + + Sbjct: 90 AFSTWAEREGYLTRDVAARLVTPKVGQHLPTVMAPQQAGELVGNAVSVDEAHFQRDSAIL 149 Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-----ELPDGFMKLLAM---- 247 E L SG+R ++ R ++ + + + G V D + + Sbjct: 150 ELLYASGMRVAELVRLDIEDVDFKRSTARVTGKGNKQRVVPFGAAATDALQQWIDGGRKE 209 Query: 248 -TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAH 305 + F+ + +++ Q AT G + HGVR +AT + GA Sbjct: 210 MARGETQAIFVGSRGARIDQRQVRRIVDKAATVTGTSGLTPHGVRHLAATHLLEGGADLR 269 Query: 306 ELMATYGWKTVDQAETYTKGADRIRL 331 + G ++ + YT RL Sbjct: 270 VVQELLGHSSLSTTQIYTH-VSAKRL 294 >gi|134045801|ref|YP_001097287.1| phage integrase family protein [Methanococcus maripaludis C5] gi|132663426|gb|ABO35072.1| phage integrase family protein [Methanococcus maripaludis C5] Length = 287 Score = 97.4 bits (241), Expect = 3e-18, Method: Composition-based stats. Identities = 47/285 (16%), Positives = 107/285 (37%), Gaps = 22/285 (7%) Query: 74 LISEYRKSAHWG-SLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESRKHTP 130 L+ +Y + SL+ +S +++ + ++ D + +T + S + Sbjct: 8 LVKKYL---EFHTSLSKDSLKYYKAGLNAFMKYFPDENKSWENLTVEDAIFFYRSYNVSK 64 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLS-VERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 ++ I+ L + + WA++Q+Y+ NP + V + + + T++ + S + Sbjct: 65 NTKIRRLNDVNRFYNWAMKQKYLVENPIETFVTTLRPEKKERAYLTEKQFKILLSNVKDF 124 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLA- 246 + FLL +G+R S+ V+ + N I I K V + L Sbjct: 125 NY-YTYTLFLLKTGVRISEFVNLKVKQVDFENGIIFIHAGKGAKDRYVFMDVELASRLEY 183 Query: 247 ------MTPIGKETFFINNDKQKMNATQFSIW--FKAKATKAGV--NKSAHGVRKFSATI 296 +T + FF+N +K+ Q + + + + + + H +R AT Sbjct: 184 YLEMRILTNLSCNNFFVNKHGRKLAEDQITKYTDYLNEVMDGSISFRITPHILRHTFATA 243 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341 + G L G + + Y ++ L + + ++ Sbjct: 244 MLEKGMDLKSLSLILGHEDIKTTSQYLHK-NKEALQKEYLKAMAR 287 >gi|114706518|ref|ZP_01439419.1| tyrosine recombinase [Fulvimarina pelagi HTCC2506] gi|114537910|gb|EAU41033.1| tyrosine recombinase [Fulvimarina pelagi HTCC2506] Length = 319 Score = 97.4 bits (241), Expect = 3e-18, Method: Composition-based stats. Identities = 36/239 (15%), Positives = 69/239 (28%), Gaps = 19/239 (7%) Query: 109 FDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168 D + + + + S + L+ +R + ++ + ++ PK+ Sbjct: 62 ADLKPMDLRSFLAARRRDGAGARSLGRGLSGIRSFLRHLEKRGLASSAGAKAMRAPKQTK 121 Query: 169 EGIRPWT-------KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI 221 RP + E+ F + G++ L GLR S++ L + + Sbjct: 122 GLPRPLSVAGALDVTEEADAFSTEPWVGARDVAVLTLLYGCGLRISEALTLRGDALTDEM 181 Query: 222 FS--IKTQKTGTIITVELPDGFMKLLAMTPI-------GKETFFINNDKQKMNATQFSIW 272 K G V L + +A F + Sbjct: 182 ARSMTIRGKGGKTRLVPLIPAVHEAVATYRRLCPHDLDAGHPLFRGVRGGPLRPQIVQRN 241 Query: 273 FKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADR 328 G+ + H +R AT AG + G ++ + YT ADR Sbjct: 242 MARLRGAFGLPPSATPHALRHSFATHLLAAGGDLRTIQDLLGHASLSTTQAYTAVDADR 300 >gi|29830251|ref|NP_824885.1| phage integrase [Streptomyces avermitilis MA-4680] gi|29607362|dbj|BAC71420.1| putative tyrosine-family recombinase/integrase [Streptomyces avermitilis MA-4680] Length = 393 Score = 97.4 bits (241), Expect = 3e-18, Method: Composition-based stats. Identities = 66/372 (17%), Positives = 118/372 (31%), Gaps = 46/372 (12%) Query: 13 KERTRHGKIIYYFRKGHG--RRIRLPYPHES--------TFIPAYMSALTGSTPKREYIN 62 ++R +G + RK R+ +P P + T + + Sbjct: 4 RKRNPNGSGSIWQRKDGRYEARVYVPQPDGTRKRKTVYGTTWEECDTKRQELVLRDRQGI 63 Query: 63 SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRS 121 + L + + K +++ +E ++ G ++ +R Sbjct: 64 PTPTRSAKLSEWLPYWLKHYVEPRRKLSTYDKYEVQVRLYLVPLLGTRRLESLSVADVRR 123 Query: 122 GVES--RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179 + HT ++A + +R AVR+E + N VE P+ K IRPW+ E+ Sbjct: 124 FITRVQNAHTAATAKESHRVLRTALTAAVREELITRNVASLVEPPRVKQREIRPWSLEET 183 Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQ---------- 227 F + AF + GLR + + N + ++ Q Sbjct: 184 LSFLE-AARSDPLYAAFVLAIAMGLRRGELGGLRWSDVDLDNRVVHVRQQTQRRRGTLYD 242 Query: 228 ---KTGTIITVELPDGFMKLLA-MTPIGKETF-------------FINNDKQKMNATQFS 270 K+ I V +P + L +ETF F + + + Sbjct: 243 DDPKSRRIRVVPMPALCIAPLRWHRLRQRETFARTGVAWCEAGYVFATRNGRPVEPRNVY 302 Query: 271 IWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGA-D 327 F A AG+ H R AT+ AG +M G + + YT D Sbjct: 303 RSFTRVAADAGLRVVRLHDARHGCATLLTAAGVAPRVIMEILGHSQISITMDVYTHVVHD 362 Query: 328 RIRLGIKNSRRI 339 R I + R+ Sbjct: 363 TQREAISHMDRL 374 >gi|251779032|ref|ZP_04821952.1| phage integrase [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243083347|gb|EES49237.1| phage integrase [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 335 Score = 97.4 bits (241), Expect = 3e-18, Method: Composition-based stats. Identities = 41/263 (15%), Positives = 87/263 (33%), Gaps = 23/263 (8%) Query: 78 YRKSAHWGSLAVNSRISFES-------YFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130 Y L+ + +++ YF + G D R + + P Sbjct: 65 YLACKKLEGLSPKTLNNYKLFLIKLNMYFTKPCSTIGTMDLRMFL------ALLGKGKQP 118 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 S+ ++T ++ F W +EY+ NP +++ K + + E++++ + Sbjct: 119 STVNGYITCLKNFFGWLQNEEYIIKNPAFRLKQTKVPKVVRQGYKAENLEKLREACKT-E 177 Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-----ELPDGFMKLL 245 + + FE L + R S+ + + + SIK G+ + + Sbjct: 178 REKALFELLDSTACRISEIQNIKLPDINWHEKSIKVLGKGSKERIVYFSTRAKLALENYI 237 Query: 246 AMTPIGKETFFINNDKQKMN--ATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAG 301 + FI+ + K ++GV + AH R+ AT + G Sbjct: 238 KDRSDNNNSLFISKKFKNKTIGVRSLQNIIKKIYERSGVTERVYAHKFRRTQATRLLNQG 297 Query: 302 ATAHELMATYGWKTVDQAETYTK 324 + G T + Y + Sbjct: 298 MRIEGVQGILGHTTPTTTQIYAQ 320 >gi|295099411|emb|CBK88500.1| Site-specific recombinase XerD [Eubacterium cylindroides T2-87] Length = 583 Score = 97.4 bits (241), Expect = 3e-18, Method: Composition-based stats. Identities = 51/341 (14%), Positives = 110/341 (32%), Gaps = 38/341 (11%) Query: 10 FVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69 F+ + TR I+Y + + R+ + + P+ + Sbjct: 233 FIETDETRWDATIWYLERFRIAKERINQSDSIE------------KISFQEVLQPKNRL- 279 Query: 70 TLKWLISEYRK-SAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH 128 L+ EY K G LA+++ +++ + + K T I +++ ++ Sbjct: 280 ----LLQEYMKYEIGIGELALSTVYERFRTIRNFLQEISELEVTKCDTSLIDVYLKNLQN 335 Query: 129 TPSSAIQF---LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED---MQQF 182 A F ++ ++ K+ + Y+ P + +++ + E+ M+ Sbjct: 336 GAMGAKTFNTNVSGIQFFMKFLEVKGYIKKVPFYASYYLEKQIPVHHDRSVEEDVYMEII 395 Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVELP 238 ++ R+ F L GLR S+ C + + K V +P Sbjct: 396 QNLSQFPEHLRMMFLHLWCVGLRISEVCTLKGDAYYIQNGDCWMKVYQVKMKNYKRVPIP 455 Query: 239 DGFMKLLAMT----PIGKETFFINND-KQKMNATQFSIWFKAKATKAGVNK-----SAHG 288 +L+ + P KE + N + + F K ++ G+ +H Sbjct: 456 VTLYRLMQVYLKKHPTEKEAYIFRNRKGGAFSKSTFMGQMKKYCSQIGIQNGEYIFKSHD 515 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 R AT + G + + G + Y R Sbjct: 516 YRHTVATNFYEHGVSIQSIRDYLGHTFEEMTMQYIDYMPRK 556 >gi|205320825|gb|ACI02940.1| TnpF [uncultured bacterium HH1107] Length = 221 Score = 97.4 bits (241), Expect = 3e-18, Method: Composition-based stats. Identities = 31/172 (18%), Positives = 66/172 (38%), Gaps = 10/172 (5%) Query: 161 VERPKRKTEGIRPWTKED-MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN 219 +ERPK++ ++E+ ++ ++ E + + + +GLR S+ ++ + + Sbjct: 34 IERPKKEKTLPVVMSEEETIRVLRAI--ENVKHKAILMTIYSAGLRISECINLKIKDIDS 91 Query: 220 NIFSIK--TQKTGTIITVELPDGFMKLLAMTPIG---KETFFINNDKQKMNATQFSIWFK 274 I+ K L + + +L + K+ F ++ FK Sbjct: 92 KRMQIRIEQSKGKRDRYTILSEKTLIILRTYFMEYKPKDYLFEGQKGGAYSSRSIQNIFK 151 Query: 275 AKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 A KA + K + H +R AT + G + + + G + E YT Sbjct: 152 AAVLKAKIQKEVTVHTLRHSFATHLLENGTSLRYIQSLLGHSSSKTTEVYTH 203 >gi|304394166|ref|ZP_07376089.1| tyrosine recombinase XerD [Ahrensia sp. R2A130] gi|303293606|gb|EFL87983.1| tyrosine recombinase XerD [Ahrensia sp. R2A130] Length = 308 Score = 97.4 bits (241), Expect = 3e-18, Method: Composition-based stats. Identities = 44/271 (16%), Positives = 86/271 (31%), Gaps = 31/271 (11%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITT--KHIRSGVESRKHTPSSAI---QFLTS 139 A N+ + + + +H+R + + +A + L++ Sbjct: 18 RGAAANTLSGYGRDLADYSAHCRNTRTTVMDAGAEHVRGWMARLADSGCAASTQARKLSA 77 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ------PR 193 +R L+++ +P +V+RPK + ++ D+ + + ++ R Sbjct: 78 VRQLYRFLFSDGLREDDPTATVDRPKTGRPLPKVISEIDVDRLLGAAQDAARKGETSAAR 137 Query: 194 LA-------FEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLL 245 L E L SGLR S+ + F T K V + ++ + Sbjct: 138 LRAARTLALLELLYASGLRVSELVALRSATITPQTRFVNVTGKGAKERLVPISAAALEAV 197 Query: 246 AM---------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFS 293 F + + F+ KA AT AG+ S H +R Sbjct: 198 EAYRQAARDHKQAPSAWLFPSRSAAGHITRQHFARDLKALATSAGLPASKLSPHVLRHAF 257 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTK 324 A+ GA + G + + YT Sbjct: 258 ASHLLQNGADLRAVQQLLGHADIATTQIYTH 288 >gi|312195374|ref|YP_004015435.1| integrase family protein [Frankia sp. EuI1c] gi|311226710|gb|ADP79565.1| integrase family protein [Frankia sp. EuI1c] Length = 304 Score = 97.4 bits (241), Expect = 3e-18, Method: Composition-based stats. Identities = 47/271 (17%), Positives = 93/271 (34%), Gaps = 19/271 (7%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISF----ESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126 L L+ ++R+ + + + S+ ES+ + + I +H+ + + S Sbjct: 12 LTTLLPDWRRHLRALNRSPATIQSYLTVGESFVGYLTEQGMPRSAGAIAREHVEAYLVSL 71 Query: 127 KHTPSSA--IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 S+A + S++ LF+W V ++ P + P + + + +++ Sbjct: 72 SERVSAATVAKHYRSLQQLFRWLVEDGEISRTPFERMSAPAVPEQPVPILGDDVLRKLLD 131 Query: 185 FWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVEL-- 237 E + L +G+R + V L ++ + K V Sbjct: 132 ACKGNSFENRRDAAIIRLFLDTGVRIGELVGLSVDDLDFDHDVAHVMGKGRRGRAVPYGN 191 Query: 238 --PDGFMKLLAMTPI---GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRK 291 D + + K K M ++ S + +A AGV K AH R Sbjct: 192 RTADALRRYIRARARHGQAKSPALWLGKKGPMTSSGISQMLERRAADAGVPKLHAHQFRH 251 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETY 322 A AG +LM GW++ + Y Sbjct: 252 TFAHAWLAAGHQEQDLMRLAGWRSREMVGRY 282 >gi|330812148|ref|YP_004356610.1| putative phage integrase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327380256|gb|AEA71606.1| putative phage integrase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 377 Score = 97.4 bits (241), Expect = 3e-18, Method: Composition-based stats. Identities = 51/290 (17%), Positives = 107/290 (36%), Gaps = 27/290 (9%) Query: 60 YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119 YI + TL+ + +Y + + ++ + + Q+IR G + ++++ I Sbjct: 71 YIQRSGSERLTLEKALQQYLREVS-PTKKPTTQRAEATKAQQLIRHLGKYSLAALSSEVI 129 Query: 120 RSGVESR------KHTPSSAIQF---LTSMRVLFKWAVRQEY---VAINPCLSVERPKRK 167 + ++R + P+S L + LF A+ QE+ + NP L++ +P Sbjct: 130 ANYRDTRLGSLTNRGNPTSNNTVRLELALLSHLFTVAI-QEWGLGLTFNPVLNIRKPSPG 188 Query: 168 TEGIRPWTKEDMQQFKSFWSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK 225 R + E+ ++ + + S P L L +G+R S+ + ++ Sbjct: 189 EGRDRRLSPEEERRLLAAVNNHSNPMLGWIVRIALETGMRSSEITGLRRHQIDLKRRVVR 248 Query: 226 TQ--KTGTIITVELPDGFMKLLAMT------PIGKETFFINNDKQ--KMNATQFSIWFKA 275 K + TV L P + F + K F+ + Sbjct: 249 LSDTKNDSARTVPLSRLATVTFQAALENPTRPQDCDLVFFGEPGKDGKRRPYAFTKVWGV 308 Query: 276 KATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 K G+ + H +R + + + G + E+ A G K++ + YT Sbjct: 309 LKKKFGMPDLRFHDLRHEAVSRFVEGGLSDQEVSAISGHKSMQMLKRYTH 358 >gi|229497057|ref|ZP_04390761.1| site-specific recombinase, phage integrase family/ribosomal subunit interface protein [Porphyromonas endodontalis ATCC 35406] gi|229315982|gb|EEN81911.1| site-specific recombinase, phage integrase family/ribosomal subunit interface protein [Porphyromonas endodontalis ATCC 35406] Length = 398 Score = 97.4 bits (241), Expect = 3e-18, Method: Composition-based stats. Identities = 39/275 (14%), Positives = 94/275 (34%), Gaps = 25/275 (9%) Query: 75 ISEYRKSAHW-GSLAVNSRISFE----SYFDQIIRKSGDFDYRKITTKHIRSGVES---- 125 I + + + + ++ ++E Y + G+ + + G S Sbjct: 6 IERFLGYLRYERNQSEHTVAAYELDLQQYVRYVEEVLGEEFVPSDGDRDLIRGFLSSLIE 65 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM------ 179 + SS + L+S++ +++ V+ + +P V P+ ++ +++++ Sbjct: 66 QGRKRSSVHRKLSSLKSYYRYLVKIGLLEQSPARLVRGPRGESPLPAVLSEQEISNLLYA 125 Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELP 238 Q+ + +L E +G+R S+ + + ++ K + Sbjct: 126 QEVDKDDFVALRNQLILEMFYETGMRRSELVGLLEGGVDLSSRVLRVFGKGRKERIIPFG 185 Query: 239 DGFMK------LLAMTPIG-KETFFINNDKQKMNATQFSIWFKAKATKA-GVNKS-AHGV 289 D L +G + FF++ Q ++ + G+ + H + Sbjct: 186 DRLAARISEYLALKHQKVGLSQIFFVSLGNQPLSGEVVYQIVHERLQSIPGLARRGPHVL 245 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 R AT + GA + G K+V YT Sbjct: 246 RHTFATAMLNNGAQLMAVKELLGHKSVATTVLYTH 280 >gi|169825072|ref|YP_001692683.1| putative integrase [Finegoldia magna ATCC 29328] gi|167831877|dbj|BAG08793.1| putative integrase [Finegoldia magna ATCC 29328] Length = 327 Score = 97.4 bits (241), Expect = 3e-18, Method: Composition-based stats. Identities = 41/278 (14%), Positives = 92/278 (33%), Gaps = 14/278 (5%) Query: 58 REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK 117 +E + S + T + L+ + + + S + + + + K + R+I T Sbjct: 36 KEIVESYSVQEDTSEDLLENFLSAKRIEGCSEKSLVYYRNTIQAMRDKV-EKPVREIETN 94 Query: 118 HIRSGV----ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP 173 +R + + + + + F W ++Y+ +P + R K T Sbjct: 95 DLREYLTGYQKEKNSSKVTIDNIRRIFSSFFSWLEDEDYIIKSPVRRIHRVKSATTIKET 154 Query: 174 WTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII 233 ++ E+++ + SE + + L +G+R + + + G+ Sbjct: 155 YSDENLETMRDSCSE-LRDLALIDILASTGMRIGELVHLNRKDINFEERECVVFGKGSKE 213 Query: 234 TVELPDG-----FMKLLAMTPIGKETFFIN--NDKQKMNATQFSIWFKAKATKAGVNK-S 285 + D + L F++ +M + G+ K Sbjct: 214 RMVYFDARTKIHLQEYLNSRKDDNPALFVSLKAPYDRMKIGGIEARLRGIGRNLGIEKVH 273 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 H R+ AT++ D G +L G K +D Y Sbjct: 274 PHKFRRTLATMAIDKGMPIEQLQQLLGHKRIDTTLQYA 311 >gi|330468102|ref|YP_004405845.1| integrase family protein [Verrucosispora maris AB-18-032] gi|328811073|gb|AEB45245.1| integrase family protein [Verrucosispora maris AB-18-032] Length = 333 Score = 97.4 bits (241), Expect = 3e-18, Method: Composition-based stats. Identities = 48/308 (15%), Positives = 105/308 (34%), Gaps = 44/308 (14%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG----------- 122 LI + + + +++ ++ + + + + +R G Sbjct: 12 LIEGFLTARATRKPSPHTQAAYRRDLIGVATLAAELTTPPLPLADLRIGALSPGLLRTAF 71 Query: 123 -VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM-Q 180 + +S + ++ F + V ++ V NP +V RP+ +P ED + Sbjct: 72 ARFAADRAAASVGRAWSTWNSFFTFLVAEQVVPGNPMPAVGRPRMPLPQPKPLRGEDTPE 131 Query: 181 QFKSFWSEGS---------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ---K 228 Q + + G + L +GLR S+ V L + + K Sbjct: 132 QLLASAARGEGRQRDPWPERDVAVLALALCAGLRLSELLALRVGSLSGRPGERRVEVAGK 191 Query: 229 TGTIITVELPDGFMKLLAM------------TPIGKETFFINNDKQKMNATQFSIWFKAK 276 G + + G ++L+ T ++ + + ++ Sbjct: 192 GGRPRVLPVEPGLDEVLSAYLDSRVRRFGTRTVRPDSPLLVDRRGEPLRRGGLQYLVESC 251 Query: 277 ATKAGVN------KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRI 329 +AG+ H +R AT A+ GA A E+M G ++ ++TY + A + Sbjct: 252 YRRAGIGDRVPRGARLHALRHTFATRLAEDGAGAAEIMRLLGHASLASSQTYIEVTAVQQ 311 Query: 330 RLGIKNSR 337 R ++ +R Sbjct: 312 REAVRANR 319 >gi|167768052|ref|ZP_02440105.1| hypothetical protein CLOSS21_02596 [Clostridium sp. SS2/1] gi|167710381|gb|EDS20960.1| hypothetical protein CLOSS21_02596 [Clostridium sp. SS2/1] gi|291561050|emb|CBL39850.1| Site-specific recombinase XerD [butyrate-producing bacterium SSC/2] Length = 322 Score = 97.4 bits (241), Expect = 3e-18, Method: Composition-based stats. Identities = 36/265 (13%), Positives = 94/265 (35%), Gaps = 15/265 (5%) Query: 88 AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS----SAIQFLTSMRVL 143 + + ++ + ++ ++ + + RKITT +RS + + + + ++ Sbjct: 61 SERTIQYYKVTAEHMLSQT-EKEIRKITTDEMRSYLADYQKRNNCSNVTIDNIRRNISSF 119 Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSG 203 F W ++Y+ +P + + K KT T E ++Q + ++ + + L +G Sbjct: 120 FTWLEEEDYILKSPMRRIHKIKTKTVVKSVITDEGIEQLRDHCTQ-IRDLAMIDLLYSTG 178 Query: 204 LRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDG----FMKLLAMTPIGKETFFIN 258 +R + + + + K V M+ + F+ Sbjct: 179 IRVGELVNLNIGDINFEERECVVYGKGDKERRVYFDAKAKVHLMEYIESRKDKNPALFVT 238 Query: 259 --NDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKT 315 ++ + I + + G+ + H R+ AT + D G ++ G Sbjct: 239 LDAPYDRLKISGVEIRLRQLGRELGLERIHPHKFRRTMATRAIDKGMPIEQVQKILGHSQ 298 Query: 316 VDQAETYTKGADRIRLGIKNSRRIS 340 +D Y ++ + + + +S Sbjct: 299 IDTTMQYA-MVNQNNVKASHQKYMS 322 >gi|319648636|ref|ZP_08002848.1| integrase [Bacillus sp. BT1B_CT2] gi|317389284|gb|EFV70099.1| integrase [Bacillus sp. BT1B_CT2] Length = 405 Score = 97.4 bits (241), Expect = 3e-18, Method: Composition-based stats. Identities = 60/380 (15%), Positives = 116/380 (30%), Gaps = 74/380 (19%) Query: 23 YYFR-----KGHGRR-------IRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70 +Y+R G+R R E L G+ + + I Sbjct: 23 WYYRYDIVDPTTGKRKQKEVGGFRTKAEAEEEAKRIQYELLQGTYIEEKEITFEEFAK-- 80 Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130 +WLI + + + G + V++ + +++ + IT K + + K Sbjct: 81 -EWLI--WYE--NTGKVKVSTIRVRKHEISRLMDYFQYLKMKDITRKQYQEALNDLKARG 135 Query: 131 SSAIQFLTSMR---VLFKWAVRQEYVAINPC---------LSVERPKRKTEGIRPWTKED 178 + + R ++FK A+ E + +P +VE +R+ E + KE+ Sbjct: 136 YAENTIDGAHRTGRMIFKRAIELEVIKTDPTEYAIVPKVQKTVEELEREKELPKYLEKEE 195 Query: 179 MQQFKSFWSEGS---QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT------ 229 + F S + + F L Y+G+R + C + +I KT Sbjct: 196 LAHFLSIIPDHQMDIRDYPIFLTLAYTGMRAGELCALKWSDIDFEEQTISITKTYYNPRN 255 Query: 230 --------------GTIITVELPDGFMKLLAMTPIGKET-------------FFIN---- 258 + D ++L + KE F Sbjct: 256 AIKEYELLTPKTKKSKRVIDVTKDVLIELDKLRKAQKEVQMKHRKTYHNEGFVFAQLDEV 315 Query: 259 NDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTV 316 N I K A +N + H +R ++ A+AG + ++M G Sbjct: 316 NAGYPAYVKLIEIRMKRLLKIANLNPSLTPHSLRHTHTSLLAEAGVSLEQIMDRLGHTDD 375 Query: 317 DQAE-TYTKGADRIRLGIKN 335 D + Y + + Sbjct: 376 DTTKNIYLHITKPKKKEASH 395 >gi|317481288|ref|ZP_07940359.1| phage integrase [Bacteroides sp. 4_1_36] gi|316902621|gb|EFV24504.1| phage integrase [Bacteroides sp. 4_1_36] Length = 366 Score = 97.4 bits (241), Expect = 3e-18, Method: Composition-based stats. Identities = 35/297 (11%), Positives = 91/297 (30%), Gaps = 22/297 (7%) Query: 41 STFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD 100 F Y + + ++ TL Y + + ++ ++ +YF Sbjct: 60 PDFYDRYSPHAYIDYSRVYVRHPKPQREYTLP---EGYLELLEQKRYSPSTIKTYRAYFS 116 Query: 101 QIIRKSGDFDYRKITTKHIRSGV----ESRKHTPSSAIQFLTSMRVLFKWAV--RQEYVA 154 + + + I + +K + S + +++ ++ +++Y Sbjct: 117 DFMEYHKGRNIDHLKVADINKYILYLVNEKKISVSQQNMRINAIKFYYEQVKGGKRQYYG 176 Query: 155 INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGV 214 + R K ++ ++ + + S R + +GLR S+ Sbjct: 177 -----GITRAKEYKSLPEVLSRNEVARILACLSNRKH-RCMISLIYSAGLRRSELLNLTP 230 Query: 215 QHLQNNIFSIKTQKTGTI-----ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF 269 + + + ++ G ++ +L + K F ++ +A+ Sbjct: 231 KDIISERMLVRIMGKGRKCRYSLLSEKLLKELREYFKEYRPQKWLFEGETPGEQYSASAL 290 Query: 270 SIWFKAKATKAGVNKSAHG--VRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 K A++AG+ H +R AT + G + G + Y Sbjct: 291 VKILKEAASRAGIKHRVHVHMLRHSFATHLLEQGTDLRTIQELLGHNDIKTTSIYLH 347 >gi|323340466|ref|ZP_08080721.1| tyrosine recombinase XerC [Lactobacillus ruminis ATCC 25644] gi|323092010|gb|EFZ34627.1| tyrosine recombinase XerC [Lactobacillus ruminis ATCC 25644] Length = 372 Score = 97.4 bits (241), Expect = 3e-18, Method: Composition-based stats. Identities = 42/357 (11%), Positives = 105/357 (29%), Gaps = 36/357 (10%) Query: 23 YYFRK-----GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISE 77 + R RR + + A S S ++ ++ K + E Sbjct: 12 WRVRISWYDSTGTRRFKSKAGFST---KAEASRWARSMEIKKDDSTITDKSVSFAQYFDE 68 Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK--HTPSSAIQ 135 + ++ ++ + + ++ G +IT + + + H P S + Sbjct: 69 WFRTYKENKISYITAGKYRVIQSKLAEFYGSRKIDEITRRDYQRFINEYGACHAPESVKK 128 Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP--WTKEDMQQFKSFWSEGSQPR 193 + +R K A+ + + + +VE + ++ + ++ PR Sbjct: 129 TNSIIRSCVKSAILDDLITKDFTQNVELVWNSDREHKVDYLNVNEINKLAAYLESKLDPR 188 Query: 194 LAFEFLLYS----GLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT--------------V 235 +++Y+ G+R + + N +I K + + Sbjct: 189 YTSYYMIYTAIMTGMRLQEIAALTWDDINFNWKTIDINKAWDFVLKKYIPTKTESSTRII 248 Query: 236 ELPDGFMKLLAMTPIGKE-TFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRK 291 + + ++A F N + + + + G+NK H +R Sbjct: 249 RVNSKLLDIIAQLKSNHSGMVFCNASGTIPTSAGCNKTLRKSLRQLGINKPSYHFHALRH 308 Query: 292 FSATISADAGATAHELMATYGWKTV-DQAETYTKGADRIR-LGIKNSRRISSVVDSD 346 + G + + G + Y D +R + I + V + Sbjct: 309 SHVALLLYKGVDIYAISKRLGHSDLTTTTRRYAYLIDELRQKADDDIENILNNVGIE 365 >gi|118616367|ref|YP_904699.1| prophage integrase [Mycobacterium ulcerans Agy99] gi|118568477|gb|ABL03228.1| prophage integrase [Mycobacterium ulcerans Agy99] Length = 389 Score = 97.4 bits (241), Expect = 3e-18, Method: Composition-based stats. Identities = 60/354 (16%), Positives = 119/354 (33%), Gaps = 48/354 (13%) Query: 8 PPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFI-------------PAYMSALTGS 54 P + K G+ Y R + P + A+ S Sbjct: 6 PRGIRKRLNAAGEPRYQVR------YLIRDPDAPSGWVETSATFPTLREAKAFKSERDNE 59 Query: 55 TPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRK 113 PR T L + +++ S +++ + + +++ +I + G + Sbjct: 60 AALGARRFDPRLGRTPLSRIWTQFSDSKK-PAVSPKTWSGYNQHWELRIKPRFGHVPVDE 118 Query: 114 ITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR-KTEGIR 172 IT +R+ V+ P + + L +R + A + + NP L V + + E R Sbjct: 119 ITRADVRAFVDGLTVGPWAKVSTLRLLRSILDVAHQDGRIHRNPALGVSAGRIPERERHR 178 Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-------------- 218 T ++++ + + L Y+GLR S+ V+ + Sbjct: 179 YLTAQEVRMLATACGD---QGDVVTILAYTGLRWSEPVGLRVKDIDLTARRLYVRRAAPE 235 Query: 219 -NNIFSIKTQKTGTII-TVELPDGFMKLLAMTPIGK--ETFFINNDKQKMNAT----QFS 270 I KT I TV LP + + G+ + + + M + + + Sbjct: 236 VEGHIVIGPPKTRAGIRTVPLPQVVVDIFKGRITGQAPDQPAVTSTNGAMLRSNNWRRHT 295 Query: 271 IWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYT 323 W KA + + H +R A+++ +GA + T G T A Y+ Sbjct: 296 HWNKALKSTDLAPLTIHDLRHTYASLARKSGADLRYVQKTMGHSTPTVTANIYS 349 >gi|194449272|ref|YP_002045468.1| phage integrase family protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194407576|gb|ACF67795.1| phage integrase family protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] Length = 404 Score = 97.4 bits (241), Expect = 3e-18, Method: Composition-based stats. Identities = 42/255 (16%), Positives = 79/255 (30%), Gaps = 21/255 (8%) Query: 93 ISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQ 150 S+ + + + + K ++A + +R A R+ Sbjct: 125 RSYHGRAELTFEEIDKKFLEGFRKYLLEEPLTKSKSKLAKNTASSYFNKVRAALNEAYRE 184 Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSC 210 + NP V+ K + T ++++ + AF F +GLR SD Sbjct: 185 GIIRDNPVQRVKSVKAENTKRTYLTLDEVRAMTKAECRYDVLKRAFLFSCTTGLRWSDIN 244 Query: 211 RAGVQHLQN-----NIFSIKTQK----TGTIITVELPDGFMKLLAMT---PIGKETFFIN 258 + ++ QK +++ ++LPD + LL + F Sbjct: 245 KLTWSEIEEFEPGHYRIIFDQQKLKNGGNSLVYLDLPDSAVTLLNIQNKEGPDDRVFVGL 304 Query: 259 NDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTV 316 MN A +AG+ K + H R A + G + L G + Sbjct: 305 KYNSYMNVALLQ-----WAMRAGITKHVTFHAGRHTFAVAQLNRGVDIYSLSRLLGHSEL 359 Query: 317 DQAETYTKGADRIRL 331 E Y + R+ Sbjct: 360 RTTEIYADILESRRV 374 >gi|118443064|ref|YP_879283.1| phage integrase family site specific recombinase [Clostridium novyi NT] gi|118133520|gb|ABK60564.1| site-specific recombinase, phage integrase family, putative [Clostridium novyi NT] Length = 387 Score = 97.4 bits (241), Expect = 3e-18, Method: Composition-based stats. Identities = 56/386 (14%), Positives = 119/386 (30%), Gaps = 66/386 (17%) Query: 12 TKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT- 70 +++T + K Y++R H L P Y + K + I T Sbjct: 6 YRKKTVNNKEYYFYRLRHK---NLKKP-----KDIYAKTVKELDSKIKMIIKELDNNITN 57 Query: 71 ----LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK--SGDFDYRKITTKHIRSGVE 124 ++ + H + ++ ++S F I D +++ I++ Sbjct: 58 NKEYFGAFFKDWLYNTHMINKKPSTIERYDSIFRNYIEDSIIYDIKLKELNPSDIQNYYN 117 Query: 125 ---SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK-------RKTEGIRPW 174 +R + SS + ++A + + ++ PK +K+ ++P+ Sbjct: 118 VLVTRGKSISSIKNLHKLIAPSIRYAYDSNRIMKDFSRAIIIPKDKEDTKLKKSSDVKPF 177 Query: 175 TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK------ 228 T E+ +F L F L +GLR + + + I K Sbjct: 178 TLEEQLKFIEAIKGHELEML-FLTALDTGLRQGELFALTWNDIDLDTRHISVNKSFKSIR 236 Query: 229 ---TGT---------------IITVELP--DGFMKLLAMTPI----------GKETFFIN 258 TG ++ + + D + + F N Sbjct: 237 NISTGKYENIIQTPKTSNSIRLVPIPVHLIDKLKQHKLLQKTLKLKLANLYEDNTLIFCN 296 Query: 259 NDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVD 317 + +++ FK + ++ H +R AT + G A + G + Sbjct: 297 KFGKYLDSGNVLKKFKKILNDNNLNDRKFHDLRHTYATRLFELGEEAKTVQTLLGHSNIS 356 Query: 318 QA-ETYTKGADRIRLGIKNSRRISSV 342 +TYT D L K ++ ++ Sbjct: 357 ITLDTYTHVLDS--LKEKAVSKLDTL 380 >gi|330900242|gb|EGH31661.1| phage integrase family site specific recombinase [Pseudomonas syringae pv. japonica str. M301072PT] Length = 299 Score = 97.4 bits (241), Expect = 3e-18, Method: Composition-based stats. Identities = 45/261 (17%), Positives = 90/261 (34%), Gaps = 30/261 (11%) Query: 89 VNSRISFESYFDQIIR---KSGDFDYRKITTKHI---RSGVESRKHTPSSAIQFLTSMRV 142 +R ++++ +G ++R + H+ R+ +E R + ++ + L ++ Sbjct: 39 PRTRRAYQADLRDFCSFVGLAGAEEFRAVNRAHVLAWRAQLERRALSGATIRRKLAALAS 98 Query: 143 LFKWAVRQE-YVAINPCLSVERPKRKT-EGIRPWTKED-----MQQFKSFWSEGSQPRLA 195 LF + + NP V RPK +T EG P +D + + +G + R Sbjct: 99 LFDYLLNNNALAGGNPVHGVARPKVETNEGKTPALGDDQAKRLLDAPDAESLQGVRDRAI 158 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ---KTGTIITVELPDGFMKLLAMTPIGK 252 LLY GLR + LQ + K G I + L + + + + Sbjct: 159 LAVLLYQGLRREELSLLQTGDLQERRGVKHLRIHGKGGKIRYLPLHPVAAERIYVYLVRD 218 Query: 253 E-------TFFINNDKQ----KMNATQFSIWFKAKATKAGV---NKSAHGVRKFSATISA 298 F + + + A+ A + HG+R +AT + Sbjct: 219 GDRALTPGALFRSQRGKTSGTGITGKGVYGVVTKWASAAQIRVDGLGVHGLRATAATNAL 278 Query: 299 DAGATAHELMATYGWKTVDQA 319 + A ++ G + Sbjct: 279 EHDADIAKVQIWLGHANISTT 299 >gi|255021753|ref|ZP_05293790.1| Site-specific recombinase XerD [Acidithiobacillus caldus ATCC 51756] gi|254968809|gb|EET26334.1| Site-specific recombinase XerD [Acidithiobacillus caldus ATCC 51756] Length = 307 Score = 97.4 bits (241), Expect = 3e-18, Method: Composition-based stats. Identities = 39/270 (14%), Positives = 80/270 (29%), Gaps = 34/270 (12%) Query: 83 HWGSLAVNSRISF---ESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139 + A N++ + F +T H++ ++ R + SS + ++ + Sbjct: 22 EYPDHAENTQKQYITVARTFLHWCANR-SLHPDHVTAAHLQRFLDDRGLSRSSQLAYMQA 80 Query: 140 MRVLFKWAVRQEYVAINPC----------LSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 + L+ + NP P+ E+ +F + Sbjct: 81 LSALYGILQDRGLADDNPTSSWSVQYRKKKGKSGPRMAKRLPTVLDSEEETRFLATIPLD 140 Query: 190 S-------QPRLAFEFLLYSGLRCSDSCRAGVQHLQ---NNIFSIKTQKTGTIITVELPD 239 + R+ LL++GLR S++ + ++ + K V + Sbjct: 141 DLLPFSVYRKRVFLHLLLFTGLRVSEALSLSLAQVRLEADPPVVRVIGKGNKEREVPISP 200 Query: 240 GFMKLLAMTPIGKETF-------FINNDKQKMNATQFSIWFKAKATKAGVNKSAHG---V 289 +L ++ F F T AG+ K A+G + Sbjct: 201 TLQVVLEGYLERRQRFVRNGDWLFSTAVGAPFTRTWAYTTVSEVIRGAGIQKPAYGPHVL 260 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQA 319 R AT AG + A G + + Sbjct: 261 RHTFATRQLRAGIAPAIVKAWLGHEDLAIT 290 >gi|153852802|ref|ZP_01994239.1| hypothetical protein DORLON_00221 [Dorea longicatena DSM 13814] gi|149754444|gb|EDM64375.1| hypothetical protein DORLON_00221 [Dorea longicatena DSM 13814] Length = 583 Score = 97.4 bits (241), Expect = 3e-18, Method: Composition-based stats. Identities = 50/341 (14%), Positives = 109/341 (31%), Gaps = 38/341 (11%) Query: 10 FVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69 F+ + TR I+Y + + R+ + + P+ + Sbjct: 233 FIETDETRWDATIWYLERFRIAKERINQSDSIE------------KISFQEVLQPKNRL- 279 Query: 70 TLKWLISEYRK-SAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH 128 L+ EY K G LA+++ +++ + + K I +++ ++ Sbjct: 280 ----LLQEYMKYEIGIGELALSTVYERFRTIRNFLQEISELEVTKCDASLIDVYLKNLQN 335 Query: 129 TPSSAIQF---LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED---MQQF 182 A F ++ ++ K+ + Y+ P + +++ + E+ M+ Sbjct: 336 GAMGAKTFNTNVSGIQFFMKFLEVKGYIKKVPFYASYYLEKQIPVHHDRSVEEDVYMEII 395 Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVELP 238 ++ R+ F L GLR S+ C + + K V +P Sbjct: 396 QNLSQFPEHLRMMFLHLWCVGLRISEVCTLKGDAYYIQNGDCWMKVYQVKMKNYKRVPIP 455 Query: 239 DGFMKLLAMT----PIGKETFFINND-KQKMNATQFSIWFKAKATKAGVNK-----SAHG 288 +L+ + P KE + N + + F K ++ G+ +H Sbjct: 456 VTLYRLMQVYLKKHPTEKEAYIFRNRKGGAFSKSTFMGQMKKYCSQIGIQNGEYIFKSHD 515 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 R AT + G + + G + Y R Sbjct: 516 YRHTVATNFYEHGVSIQSIRDYLGHTFEEMTMQYIDYMPRK 556 >gi|294678724|ref|YP_003579339.1| tyrosine recombinase XerC [Rhodobacter capsulatus SB 1003] gi|294477544|gb|ADE86932.1| tyrosine recombinase XerC [Rhodobacter capsulatus SB 1003] Length = 307 Score = 97.4 bits (241), Expect = 3e-18, Method: Composition-based stats. Identities = 41/247 (16%), Positives = 79/247 (31%), Gaps = 20/247 (8%) Query: 104 RKSGDFDYRKITTKHIRSGVES---RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160 G + +R+ + R + S + L++++ +W +E LS Sbjct: 51 ESLGLAQLAGLGQSDMRAWMAHERNRGLSGRSLARALSAVKNFIRWLAAREGFDATHVLS 110 Query: 161 VERPKRKTEGIRPWTKED----MQQFKSFWSEG---SQPRLAFEFLLYSGLRCSDSCRAG 213 + PK + + RP + E ++Q + E ++ + GLR S++ Sbjct: 111 AKAPKYQRKLPRPLSVEAAAEVLEQVEVQAQEPWIAARDSAVMTLMYGCGLRVSEALALK 170 Query: 214 VQHLQNNIFSIKTQKTGTIITVELPDGFMKL------LAMTPIGK-ETFFINNDKQKMNA 266 K V + K L P+ + E F +N Sbjct: 171 GSDAPLPEVLRIRGKGDKERLVPVLPAARKAVADYLRLCPFPMSRYEPLFRGARGGPLNP 230 Query: 267 TQFSIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 + + G+ +A H +R AT G + G ++ + YT Sbjct: 231 RLVAKSMERARLGLGLPATATPHALRHSFATHLLAEGGDLRAIQELLGHASLATTQVYT- 289 Query: 325 GADRIRL 331 D+ RL Sbjct: 290 AVDQARL 296 >gi|283797946|ref|ZP_06347099.1| site-specific recombinase, phage integrase family [Clostridium sp. M62/1] gi|291074412|gb|EFE11776.1| site-specific recombinase, phage integrase family [Clostridium sp. M62/1] gi|295091862|emb|CBK77969.1| Site-specific recombinase XerD [Clostridium cf. saccharolyticum K10] Length = 350 Score = 97.4 bits (241), Expect = 3e-18, Method: Composition-based stats. Identities = 42/281 (14%), Positives = 90/281 (32%), Gaps = 32/281 (11%) Query: 93 ISFESYFDQIIRKSGDFDYRK---ITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVR 149 + ++ + G D + H E +T + ++S++ + + R Sbjct: 69 RDKRDFTVDVLDQIGVMDLEEYLEFLKCHSTENKEDLVNTERGLTRKMSSLKSFYNYFFR 128 Query: 150 QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS---------------QPRL 194 E + NP V+ PK + I +++ + +G + Sbjct: 129 NERIKTNPAALVKLPKLHEKEIIRLEIDEVARLLDLVEDGQELTERQKAYHEKTKIRDLA 188 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAM------ 247 LL +G+R S+ + + N+ I+ +K G + + D + L Sbjct: 189 LMTLLLGTGIRVSECIGLNLNDVDFNVDGIRIHRKGGKEVIIYFGDEVEQALRAYLEERK 248 Query: 248 ----TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAG 301 P +E F++ K++MN K + + H +R T Sbjct: 249 KMIPAPGNEEALFLSMQKKRMNVRSVENLVKKYSRIVTPLKKITPHKLRSTYGTNLYRET 308 Query: 302 ATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISS 341 + + G V+ + Y D R +N ++ Sbjct: 309 GDIYLVADVLGHADVNTTKKHYAALEDERRRSARNKVKLRE 349 >gi|160934965|ref|ZP_02082351.1| hypothetical protein CLOLEP_03840 [Clostridium leptum DSM 753] gi|156866418|gb|EDO59790.1| hypothetical protein CLOLEP_03840 [Clostridium leptum DSM 753] Length = 414 Score = 97.4 bits (241), Expect = 3e-18, Method: Composition-based stats. Identities = 44/283 (15%), Positives = 90/283 (31%), Gaps = 45/283 (15%) Query: 86 SLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKHT--PSSAIQFLTSM 140 + + S+ES Q I + + +HI+ + T P+S I + + Sbjct: 95 RVKPTTFGSYESMVKQTIEPYFRNKPITLKDLEARHIQQFYSEKLKTVKPNSVIHYHAVI 154 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL 200 K+A++ + VA N + V+RPK+ ++Q G++ L Sbjct: 155 HQALKYAMKTDLVAQNVAMKVDRPKKNDFQPVFLDAAELQHLFDVVK-GTKLELPVLVAA 213 Query: 201 YSGLRCSDSCRAGVQHLQNNIFSIKTQKT---------------------GTIITVELPD 239 + GLR + + ++ ++T ++ T+ L Sbjct: 214 FYGLRRGEVLGLKWDAIDFERGTLTIKRTVTSVNVGGKTQVIEQESAKTKSSMRTLPLVG 273 Query: 240 GFMKLLAMTPIGKET----------------FFINNDKQKMNATQFSIWFKAKATKAGVN 283 F + A +E F++ ++M + F A + G+ Sbjct: 274 RFREYFAEVKAAQELNKQVCGNCYNYEYDGFVFVDELGERMKTDYLTSQFPAFIQRHGMK 333 Query: 284 K-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTK 324 K H +R A++ G ++ G Y Sbjct: 334 KMRFHDLRHSCASLLLANGVPLKQIQDWLGHSDFSTTANIYAH 376 >gi|154500010|ref|ZP_02038048.1| hypothetical protein BACCAP_03668 [Bacteroides capillosus ATCC 29799] gi|150271608|gb|EDM98865.1| hypothetical protein BACCAP_03668 [Bacteroides capillosus ATCC 29799] Length = 503 Score = 97.4 bits (241), Expect = 3e-18, Method: Composition-based stats. Identities = 46/329 (13%), Positives = 98/329 (29%), Gaps = 47/329 (14%) Query: 42 TFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAH-------WGSLAVNSRIS 94 F A P + P I E+ + + S A + + S Sbjct: 148 AFQYAVELTWLKENPVAHINPCADEAPILFTDFILEWLEMMKNSVELTTYSSYANSIKGS 207 Query: 95 FESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVA 154 YF + D + + + T ++ I ++R ++A + + Sbjct: 208 IVPYFKDKMLTLQDLEKHPKHIQDYYQFELGKGLTANTVIHRHANIRKCLQYAFQIGLIK 267 Query: 155 INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGV 214 NP VERP++ + +++++ G L + GLR S+ Sbjct: 268 SNPADRVERPRKDKYLATIYNQQELEILFKTVK-GDPIELGVILAAFYGLRRSEVVGLKW 326 Query: 215 Q------------------HLQNNIFSIKTQKTGTI---ITVELPDGFMKLLAMTPIGK- 252 ++ +++ +T T T+ L F +LL + Sbjct: 327 DAIDFEKKTISIKHTVTQVNVDGKNITVQKDRTKTKSSYRTLPLVPPFEELLRRLKQEQL 386 Query: 253 ---------------ETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATI 296 + ++N + + + F+ G+ K H +R A++ Sbjct: 387 VNQKVCGAAYCKKYLDYIYVNAMGELVKPNFITQHFEIVLKNHGLKKIRFHDLRHSCASL 446 Query: 297 SADAGATAHELMATYGWKTVDQAE-TYTK 324 G + ++ G + YT Sbjct: 447 LYANGVSLRDIQEWLGHSDIGTTSNIYTH 475 >gi|301066065|ref|YP_003788088.1| site-specific recombinase, prophage lsa1 integrase [Lactobacillus casei str. Zhang] gi|300438472|gb|ADK18238.1| Site-specific recombinase, prophage lsa1 integrase [Lactobacillus casei str. Zhang] Length = 382 Score = 97.4 bits (241), Expect = 3e-18, Method: Composition-based stats. Identities = 56/314 (17%), Positives = 111/314 (35%), Gaps = 46/314 (14%) Query: 69 TTLKWLISE----YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124 T L ++ Y ++ GS A ++ F ++ I G I T I+S V Sbjct: 67 HTFSDLYNQWWPIYVQTVE-GSTAYKTKQLFNNHL---IPMFGSKTLTAIKTGSIQSAVS 122 Query: 125 SRKHTPSSAIQ-FLTSMRVLFKWAVRQEYVAINPCLSVERPK--RKTEGIRPWTKEDMQQ 181 + T + A + ++ + +AV+ +Y+ NP VE P+ R + W + + + Sbjct: 123 QWRETTTKAYKERFIYLKKILSFAVKMQYIEKNPADGVELPRGVRSGKSPVYWDNKQVAR 182 Query: 182 FKSFWSEGSQP--RLAFEFLLYSGLRCSDSCRAGVQHLQ----------------NNIFS 223 F + + P F ++ +G+R + C V + N S Sbjct: 183 FLTCIDPNNDPEKYTMFLLMVSTGIRREELCALNVSDVNFKTSTLSINKAYATGLNGKES 242 Query: 224 IKTQK-TGTIITVELPD----GFMKLLA-------MTPIGKETFFIN--NDKQKMNATQF 269 IK K T + T+ L K +A ++ F + + ++++ + Sbjct: 243 IKGTKSTAGMRTIPLTPKVTIQLKKWIALLDASKIISIRDDRPLFPSPQHFEKRLGINRP 302 Query: 270 SIWFKAKATK--AGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 + W K + HG+RK T +G + G T D G + Sbjct: 303 NKWLKDIIEANHLTPRITLHGLRKSFVTNMIRSGVDVSTVQRLAGHSTPDVTLRIYAGMN 362 Query: 328 RIRLGIKNSRRISS 341 + + +++ Sbjct: 363 QSD-AREGIDKLAE 375 >gi|148652162|ref|YP_001279255.1| phage integrase family protein [Psychrobacter sp. PRwf-1] gi|148571246|gb|ABQ93305.1| tyrosine recombinase XerC subunit [Psychrobacter sp. PRwf-1] Length = 341 Score = 97.4 bits (241), Expect = 3e-18, Method: Composition-based stats. Identities = 42/287 (14%), Positives = 91/287 (31%), Gaps = 31/287 (10%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQI--IRKSGDFDYRKITTKHIRSGVESRKHTPSS 132 + ++ ++ ++ ++ + Q+ ++ + + + + R T + Sbjct: 37 VEQWLSELSVRQMSAHTIDAYYAGLYQLACFLAQAQLNWTRCDKRQLAKYIAKRLDTDAL 96 Query: 133 AI----QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 AI Q L+++R + W + Q INP + + + + Q Sbjct: 97 AISSVQQELSAIRHFYSWLIEQGQARINPTTGYQLKRAPRPLPSIADGDLIAQLLEQPMP 156 Query: 189 GS--------QPRLAFEFLLYSGLRCSDSCRAGVQHLQ----NNIFSIKTQKTGTIIT-V 235 + + + FE L SGLR + V L+ ++ G V Sbjct: 157 DTPEQARLWIRDKAMFELLYSSGLRVGELVGLNVADLRIDAKGERGEVRVTGKGNKTRLV 216 Query: 236 ELPDGFMKLLAM--------TPIGKETFFIN-NDKQKMNATQFSIWFKAKATKAGVNKS- 285 + +K + G FI+ ++ K A +AG+ ++ Sbjct: 217 PVGRQALKAINRYLPHRNLWEERGDRALFISEKHGTRLTTRAVQQRLKVAAARAGIAQNM 276 Query: 286 -AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 H +R A+ + G + + YT D RL Sbjct: 277 YPHLLRHCFASHMLSGSGDLRAVQEMLGHSDISTTQIYTH-VDFDRL 322 >gi|330891180|gb|EGH23841.1| site-specific recombinase, phage integrase family protein [Pseudomonas syringae pv. mori str. 301020] Length = 357 Score = 97.4 bits (241), Expect = 3e-18, Method: Composition-based stats. Identities = 50/289 (17%), Positives = 105/289 (36%), Gaps = 26/289 (8%) Query: 60 YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119 YI + TL+ + Y S + ++ S ++I G + ++ + I Sbjct: 50 YIQRSGSERMTLEAALKRYL-SDITPTKKPTTQRGETSKAKKLIEHLGKYSLAALSAEII 108 Query: 120 RSGVESR-------KHTPSSAIQF-LTSMRVLFKWAVRQEY---VAINPCLSVERPKRKT 168 + R T ++ ++ L + LF A+ QE+ + NP L++ +P Sbjct: 109 AGYRDKRLNEKGRVGTTSNNTVRLELALLSHLFTVAI-QEWGLGLTFNPVLNIRKPSPGE 167 Query: 169 EGIRPWTKEDMQQFKSFWSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSI 224 R + ++ ++ + + S P L L +G+R ++ L+ I + Sbjct: 168 GRNRRLSADEERRLMAAVNRHSNPMLGWIVGIALETGMRSAEISTLRKPMVDLERRIVKL 227 Query: 225 KTQKTGTIITVELPDGFMKLLAMT------PIGKETFFINNDKQ--KMNATQFSIWFKAK 276 K TV L +L P + F + K F+ + + Sbjct: 228 VDTKNDGQRTVPLSKRATELFKAAMANPARPGDCQLVFFGEPGKDKKRRPYAFTKIWGSL 287 Query: 277 ATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 + G+ + H +R + + + G + E+ A G K++ + YT Sbjct: 288 VKELGLSDFRFHDLRHEAVSRLVEGGLSDQEVSAISGHKSMQMLKRYTH 336 >gi|308448796|ref|XP_003087755.1| hypothetical protein CRE_30625 [Caenorhabditis remanei] gi|308253057|gb|EFO97009.1| hypothetical protein CRE_30625 [Caenorhabditis remanei] Length = 543 Score = 97.4 bits (241), Expect = 3e-18, Method: Composition-based stats. Identities = 48/288 (16%), Positives = 96/288 (33%), Gaps = 28/288 (9%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF--DYRKITTKHIRSGV----ESR 126 L+S + K + +V++ ++ I D + +++ +R V E Sbjct: 241 QLLSMWIKDRKIQNQSVHTLDAYFRDVSNFIDFCYDKQIELKQVEAADLREYVAYRVEKD 300 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + + SS + LTS+R KWA + Y+ IN + ++ E + Q Sbjct: 301 QLSTSSLQRHLTSIRQFMKWAKQGGYLEINAADDFQIKRQARPLPGMIDIETVNQIMDQP 360 Query: 187 SEG--------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV--- 235 + + E L SGLR ++ ++ + ++ G + Sbjct: 361 EPEKPIEKQLWLRDKAILELLYSSGLRLAEVQSLAIRDIDFTRHLLRITGKGNKTRIVPF 420 Query: 236 --ELPDGFMKLLAM------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKS 285 + D ++ L + + FI ++ Q K +A +AGV + Sbjct: 421 GSKARDSLIEWLKIYRIWQGEFSPESLVFITQRGTSISPRQIENRVKYQALRAGVNVDLH 480 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 H +R A+ + G + + YT D L Sbjct: 481 PHLLRHCFASHMLSNSGDLRAVQEMLGHSNLTTTQIYTH-VDFDHLAQ 527 >gi|167465667|ref|ZP_02330756.1| DNA integration/recombination/invertion protein [Paenibacillus larvae subsp. larvae BRL-230010] Length = 412 Score = 97.4 bits (241), Expect = 3e-18, Method: Composition-based stats. Identities = 50/334 (14%), Positives = 108/334 (32%), Gaps = 58/334 (17%) Query: 65 RKKPTTLKWLIS-----EYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKH 118 + + TLK I +Y +L+ + ++ + + I+ G I T H Sbjct: 70 KPEKMTLKQFIENEWEPKYASKP--KNLSPLTYKTYMHHIENHIMPTFGHKFLGDIKTLH 127 Query: 119 IRSGVESRKH------------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166 I + ++ +P + ++ + A + + NP + V++PK Sbjct: 128 IVTFIDDLGKPGSRKDNKGDTLSPGTIQFIYRVLKNILTRATEWQLIKSNPTVGVKKPKV 187 Query: 167 -KTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFS 223 +T+ KE + K+ + E + RL + G R + + N S Sbjct: 188 EQTQLDFYDEKEAREVIKALYQEPRRWRLLILGAMLGGCRRGELVGLEWSDVDFENKTIS 247 Query: 224 IK---------------TQKTGTIITVELPDGFMKLLAMTPI----------------GK 252 I+ + +I T+++P +M L + Sbjct: 248 IRKSISLTVDSRAIEKEPKSKSSIRTIDMPQWYMVELKEYEREWKKEKLSVGDKWIGGDR 307 Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATY 311 F + + S W+ + + + H +R SAT+ +AGA+ + Sbjct: 308 RYVFHAGLGKPYFYSYPSEWWSKFIKRHDLKRVRFHDLRHSSATLLIEAGASMKAIQQRL 367 Query: 312 GWKT-VDQAETYTKGADRIRLGIKNSRRISSVVD 344 G A+ Y ++ + + + Sbjct: 368 GHSKHQTTADVYAHVT--KKVSRETAEKFDKFAP 399 >gi|149916304|ref|ZP_01904824.1| site-specific recombinase, phage integrase family protein [Roseobacter sp. AzwK-3b] gi|149809758|gb|EDM69610.1| site-specific recombinase, phage integrase family protein [Roseobacter sp. AzwK-3b] Length = 363 Score = 97.4 bits (241), Expect = 3e-18, Method: Composition-based stats. Identities = 49/283 (17%), Positives = 96/283 (33%), Gaps = 33/283 (11%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIR----KSGDFDYRKITTKHIRSGVESRKH-- 128 + ++ + H+ R + + + G I +R + + Sbjct: 71 LDQFYRD-HFLPWYQTYRRNSTNIVQLYRSTYHIRYGHRHLHTICQDDLRKLTKEMQDLG 129 Query: 129 -TPSSAIQFLTSMRVLFKWAVRQEY------VAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 P S + + +R + + A Y + P L + P+ + R ++E+ Q+ Sbjct: 130 YAPGSVNRTVVILRGMLRRADDWGYCKIHSSLQKPPNLLPDHPRHE----RFLSREEAQR 185 Query: 182 FKSFWSE--GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVEL 237 ++ + LA FLLY+G R S+ A H+ + I K G TV L Sbjct: 186 LQAVLQRRGATPVNLAILFLLYTGARRSEVLNADWAHVDFARQEWRIPISKNGRPRTVIL 245 Query: 238 PDGFMKLLAMT-----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA 286 D + +L T F N ++ + W + +A + Sbjct: 246 SDRAVDILEQARAYQQRHFVKQARSVSTVFANPQTRQPYHNIWETWKRVRAEADLTDVRL 305 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 H +R A+ +AG + +E+ G + + Y A Sbjct: 306 HDLRHSYASTLINAGVSIYEVQKLLGHTNITTTQRYAHLASER 348 >gi|89070669|ref|ZP_01157942.1| site-specific recombinase, phage integrase family protein [Oceanicola granulosus HTCC2516] gi|89043749|gb|EAR49952.1| site-specific recombinase, phage integrase family protein [Oceanicola granulosus HTCC2516] Length = 371 Score = 97.4 bits (241), Expect = 3e-18, Method: Composition-based stats. Identities = 52/294 (17%), Positives = 98/294 (33%), Gaps = 20/294 (6%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE-SRKH 128 TL +I +Y + + E+ + G +I + + Sbjct: 71 TLGDVIPDYIE--KHAKVHNRDWKRKEALLAKFTALHG-RRIDEIKRADVVKACDVIHSS 127 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF-KSFWS 187 P SA + L ++ L W V + + +P ++ ++ R T +++ + + Sbjct: 128 APVSANRALAHLKHLMGWCVERGMIDASPIAGMKPLSKERSRERVLTDDELGALWAASDA 187 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK----TQKTGTIITVELPDGFMK 243 EG + L+ SG R ++ L K G TV L D + Sbjct: 188 EGYPFGDCMKLLILSGQRRAEVAEMQWSELDLERRLWTLPSQRAKNGRQHTVPLTDAMLD 247 Query: 244 LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS----AHGVRKFSATISAD 299 LL P + F+ + + F K + + + H +R+ +T A Sbjct: 248 LLRGVPRFLGSDFVFTTTGRSAVSGFG-RLKDRLDRTLPEGTQPWIIHDLRRTMSTNMAM 306 Query: 300 AGATAHELMATYGWKTV---DQAETYT--KGADRIRLGIKN-SRRISSVVDSDD 347 G A KT A Y AD R + SR+++ +++ D Sbjct: 307 MGVPQPVTEALLNHKTGVVSGVAAIYNVYSYADEKRAALDAWSRKLTQQIEALD 360 >gi|160887392|ref|ZP_02068395.1| hypothetical protein BACOVA_05411 [Bacteroides ovatus ATCC 8483] gi|156107803|gb|EDO09548.1| hypothetical protein BACOVA_05411 [Bacteroides ovatus ATCC 8483] Length = 420 Score = 97.4 bits (241), Expect = 3e-18, Method: Composition-based stats. Identities = 37/228 (16%), Positives = 80/228 (35%), Gaps = 10/228 (4%) Query: 110 DYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169 D + + G + + ++A + + ++ K A EY+ ++ V+ + Sbjct: 182 DIKMFLLRAPMGGNKKGTISQNTASTYFSILKAGLKQAFIDEYLTVDISAKVKGITNIEK 241 Query: 170 GIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSI- 224 T ++Q + + AF F + +GLR SD + + + ++ Sbjct: 242 PRVALTMNEVQMLVDTPCKDDVLKRAFLFSILTGLRHSDIQTLKWKQIQQTSKGTWQAVV 301 Query: 225 KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284 QKT + ++L + P E A+ S K +G+ K Sbjct: 302 IQQKTKRPDYKPVIQQALQLCGIRPDDDEALVFEGLTD---ASWISRPLKVWIEASGIKK 358 Query: 285 --SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 + H R A++ + G + + + G V + YT + + Sbjct: 359 HITFHCGRHSYASLLLENGVDIYTIKSLMGHTNVKTTQIYTHIVNEQK 406 >gi|34540643|ref|NP_905122.1| mobilizable transposon, int protein [Porphyromonas gingivalis W83] gi|34396957|gb|AAQ66021.1| mobilizable transposon, int protein [Porphyromonas gingivalis W83] Length = 367 Score = 97.4 bits (241), Expect = 3e-18, Method: Composition-based stats. Identities = 48/256 (18%), Positives = 93/256 (36%), Gaps = 27/256 (10%) Query: 92 RISFESYFDQIIRKSGDFDYRKITTKHIRSGVE----------SRKHTPSSAIQFLTSMR 141 RI ++ +++ + G + IT + + E K + +SA + ++ R Sbjct: 112 RIVYQHFYNYV---QGHCTFGDITIELCQGFREYLLNAKQLKRKGKVSTNSASGYYSTFR 168 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY 201 L K A R +++ N +++ + K T ++++ E + A F Sbjct: 169 GLLKIAYRDKWLRENINDFLDKIEAKEVKKEYLTLDEVKILAQTPCEHDVLKRASLFSCL 228 Query: 202 SGLRCSDSCRAGVQHL-----QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFF 256 +GLR SD + Q I+TQKT T T+ + + L P + F Sbjct: 229 TGLRISDILNLRWEDFTLAPDQGYCIRIRTQKTSTEATLPISYEAYE-LCGEPSSGKVF- 286 Query: 257 INNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWK 314 + + + + K +AG+ K + H R A I G + + K Sbjct: 287 -----KGLQRSMINYPLKKWIKQAGIMKHITFHCFRHSYAVIQISLGTDIYTVSKMLTHK 341 Query: 315 TVDQAETYTKGADRIR 330 V + Y + + Sbjct: 342 NVSTTQIYADLVNSKK 357 >gi|254555639|ref|YP_003062056.1| prophage Lp4 protein 1, integrase [Lactobacillus plantarum JDM1] gi|254044566|gb|ACT61359.1| prophage Lp4 protein 1, integrase [Lactobacillus plantarum JDM1] Length = 385 Score = 97.4 bits (241), Expect = 3e-18, Method: Composition-based stats. Identities = 47/300 (15%), Positives = 91/300 (30%), Gaps = 42/300 (14%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESRKH 128 T + + K+ + ++ E F I G IT + + + Sbjct: 72 TFDEVYEVWLKTYK-LGVKESTLNRVEGIFKHHITPSFGGMRINTITWQKCQEEALKWRE 130 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK------RKTEGIRPWTKEDMQQF 182 + + ++F+ A + + NP V+ PK + WT E + F Sbjct: 131 SVKQFNKLAQYAALVFRTAQKMGVITTNPMKLVDVPKIAVDYSKDKAADNFWTAEQLATF 190 Query: 183 KSFWSE----GSQPR----LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI-- 232 + +QPR F L +G+R ++ + + KT + Sbjct: 191 LAVVDATDGHRTQPRYDRSALFYLLATTGMRKGEALALTWSDIDLKNGLVTINKTISRSI 250 Query: 233 ----------------------ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFS 270 T++ + K L + P K+ F N Q M+ + Sbjct: 251 DNHQIISTPKTRNAYRTLSLNSSTIDRLKKYRKSLVVIPRAKDLIFTNQKGQIMSVMTPN 310 Query: 271 IWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADR 328 W +A + + + HG+R A+I L G + Y + + Sbjct: 311 HWLEALIGETDLPTITVHGLRHTFASIQVANNINVKALQMQMGHSDIKITLNIYAHLSQQ 370 >gi|197285858|ref|YP_002151730.1| phage integrase [Proteus mirabilis HI4320] gi|194683345|emb|CAR44052.1| phage integrase [Proteus mirabilis HI4320] Length = 327 Score = 97.4 bits (241), Expect = 3e-18, Method: Composition-based stats. Identities = 51/319 (15%), Positives = 117/319 (36%), Gaps = 29/319 (9%) Query: 12 TKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71 + R+GK R+ ++ HE+ Y+ + + K +P L Sbjct: 15 IRPTGRNGK---RIRRKFNKK------HEAIAFERYV--MANHSKKEWGTKLKDIRP--L 61 Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH---IRSGVESRKH 128 L+ + +G + N + ++ + ++ + + ++T+K ++ ++ Sbjct: 62 DELVELWWNM--FGKHSENGKSNYNNAM-RVCKGMHSSNVSQVTSKSISFYQNERFAKGI 118 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAI-NPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 PS+ + L ++R +F ++ NP + ++ K + T ++ ++ + Sbjct: 119 KPSTINRELYAIRGIFSQLIKMGLYEAENPFIEAKKLKINASEMSYLTLDETRKLLANL- 177 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM 247 EG +A F L +G R ++ + +H+ N KT V + + Sbjct: 178 EGDYYNIAV-FCLSTGARWGEAMKLKREHIIENKVRFTYTKTRKARIVPISKELCDQICK 236 Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHEL 307 GK+ ++ ++ F K+ ++ H +R AT G + L Sbjct: 237 ---GKKDLLFSS----VSYQVFRKILKSVKPSLPDGQATHVLRHTFATHFMINGGSIITL 289 Query: 308 MATYGWKTVDQAETYTKGA 326 G ++ Q TY A Sbjct: 290 QRILGHASLKQTMTYAHFA 308 >gi|34763511|ref|ZP_00144452.1| DNA integration/recombination/invertion protein [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27886817|gb|EAA23949.1| DNA integration/recombination/invertion protein [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 328 Score = 97.4 bits (241), Expect = 3e-18, Method: Composition-based stats. Identities = 41/295 (13%), Positives = 97/295 (32%), Gaps = 44/295 (14%) Query: 88 AVNSRISFESYFDQIIR--KSGDFDY---------RKITTKHIRSGV----ESRKHTPSS 132 + + + + + G+ D+ + I + + + + E R+ +S Sbjct: 33 SEKTIKDYMFHLKDFLHFVYDGENDFSISEVIPLMQDIEKEDVEAYIVHLFEDRQLKKTS 92 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW--TKEDMQQFKSFWSEGS 190 L++++ L+K + NP ++ K + +D+++ + S Sbjct: 93 VNTILSALKSLYKELESKGL--KNPVKYIKLFKVNRNIENILKVSIDDIRKIIGLYKIDS 150 Query: 191 QPR----LAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVELPDGFM 242 + + L Y+G+R + +H F + K+G + + + Sbjct: 151 EKKYRNITILYTLFYTGMRSKELLTLQFKHYLKREDEYFFKLIETKSGKDVYKPIHKSLV 210 Query: 243 K-------------LLAMTPIGKETFFINN--DKQKMNATQFSIWFKAKATKAGVNKSAH 287 K L + + ++ F + D ++ + + G + S H Sbjct: 211 KKLEEYKKYLISMYSLDLKDLDEKYIFSTSILDNSPLSYRSLNAIIQDMGKLIGKDISPH 270 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342 +R AT + +GA E+ G E Y R L K ++ + Sbjct: 271 NIRHAIATELSLSGADILEIRDFLGHSDTKVTEVYINA--RSILEKKVLEKLPEI 323 >gi|291444654|ref|ZP_06584044.1| site-specific recombinase [Streptomyces roseosporus NRRL 15998] gi|291444673|ref|ZP_06584063.1| site-specific recombinase [Streptomyces roseosporus NRRL 15998] gi|291347601|gb|EFE74505.1| site-specific recombinase [Streptomyces roseosporus NRRL 15998] gi|291347620|gb|EFE74524.1| site-specific recombinase [Streptomyces roseosporus NRRL 15998] Length = 314 Score = 97.4 bits (241), Expect = 3e-18, Method: Composition-based stats. Identities = 45/249 (18%), Positives = 86/249 (34%), Gaps = 26/249 (10%) Query: 109 FDYRKITTKHIRSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166 D I +H+ + + + R+ + S+A S++ +F W V +E + +P +++ P Sbjct: 56 ADLDDIHREHVEAYITATMRRTSASNAHNHFRSLKTMFNWLVDEEELDRSPMRTMKPPTL 115 Query: 167 KTEGIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSC--RAGVQHLQNN 220 + D+ + + + LL +G+R S+ R G L Sbjct: 116 PEVEVPVIPDADLSKLFKACKGTTYADRRDTALLMLLLDTGVRLSELTDRRVGDLDLDLK 175 Query: 221 IFSIKTQKTGTIITVELPDGFMKLLAM----------TPIGKETFFI----NNDKQKMNA 266 + + K G V + L P+ + ++ N Q++ Sbjct: 176 VLHV-LGKGGKTRPVPFGNTCATALDRYLRAAAKHKGKPLDDDEMWLWWGHRNKGQRLTI 234 Query: 267 TQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 K + +AG+ H R A G +LM GWK+ Y Sbjct: 235 WGVGTMLKRRCAQAGIGELHPHQFRHTFAHQWKVNGGNEDDLMRITGWKSRQMLSRYAAS 294 Query: 326 A--DRIRLG 332 A +R R+ Sbjct: 295 AGTERARMA 303 >gi|324006765|gb|EGB75984.1| site-specific recombinase, phage integrase family [Escherichia coli MS 57-2] Length = 326 Score = 97.4 bits (241), Expect = 3e-18, Method: Composition-based stats. Identities = 50/305 (16%), Positives = 99/305 (32%), Gaps = 21/305 (6%) Query: 26 RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWG 85 R G R R E+ Y+ A R L Y ++ G Sbjct: 20 RNGKRIRRRFEKKQEAVLFERYVLANADKKEWLGASVDRRTLSELLDTWWLLYGQTQENG 79 Query: 86 SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI---RSGVESRKHTPSSAIQFLTSMRV 142 + + + ++ IR GD ++ + I RS + ++ + + + Sbjct: 80 EIE-------KRHLNKTIRALGDPAVNRLNKRMIAQHRSQRLEDGISAATINRDIYRLSG 132 Query: 143 LFKWAVR-QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY 201 +F ++ +E+ NPC +E K + K ++ + + G R+A L Sbjct: 133 MFSTLIKLEEFRKENPCKGLEPLKEAPPAMTYLAKSEISKLLDTLT-GDDRRVAL-LCLS 190 Query: 202 SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK 261 +G R + + + + + K G TV + + K + + G F Sbjct: 191 TGARWGEGSTLRGEQVNHGRVTFLKTKNGKKRTVPISEELEKEIKTSDTG--PLF----- 243 Query: 262 QKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321 K++ F + ++ H +R A+ G L G ++ Q Sbjct: 244 -KVDYENFCERLRQVKPDLPRGQATHVLRHTFASWFMMNGGNIIALQQILGHASIQQTMV 302 Query: 322 YTKGA 326 Y A Sbjct: 303 YAHLA 307 >gi|295087166|emb|CBK68689.1| Site-specific recombinase XerD [Bacteroides xylanisolvens XB1A] Length = 420 Score = 97.4 bits (241), Expect = 3e-18, Method: Composition-based stats. Identities = 37/228 (16%), Positives = 80/228 (35%), Gaps = 10/228 (4%) Query: 110 DYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169 D + + G + + ++A + + ++ K A EY+ ++ V+ + Sbjct: 182 DIKMFLLRAPMGGNKKGTISQNTASTYFSILKAGLKQAFIDEYLTVDISAKVKGITNIEK 241 Query: 170 GIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIK 225 T ++Q + + AF F + +GLR SD + + + ++ Sbjct: 242 PRVALTMNEVQMLVDTPCKDDVLKRAFLFSILTGLRHSDIQSLKWKQIQQTNKGTWQAVV 301 Query: 226 -TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284 QKT + ++L + P E A+ S K +G+ K Sbjct: 302 VQQKTKRPDYKPVIQQALQLCGIRPNDDEALVFEGLTD---ASWISRPLKVWIEASGIKK 358 Query: 285 --SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 + H R A++ + G + + + G V + YT + + Sbjct: 359 HITFHCGRHSYASLLLENGVDIYTIKSLMGHTNVKTTQIYTHLVNEQK 406 >gi|255016170|ref|ZP_05288296.1| integrase [Bacteroides sp. 2_1_7] Length = 420 Score = 97.4 bits (241), Expect = 3e-18, Method: Composition-based stats. Identities = 37/228 (16%), Positives = 80/228 (35%), Gaps = 10/228 (4%) Query: 110 DYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169 D + + G + + ++A + + ++ K A EY+ ++ V+ + Sbjct: 182 DIKMFLLRAPMGGNKKGTISQNTASTYFSILKAGLKQAFIDEYLTVDISAKVKGITNIEK 241 Query: 170 GIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSI- 224 T ++Q + + AF F + +GLR SD + + + ++ Sbjct: 242 PRVALTMNEVQMLVDTPCKDDVLKRAFLFSILTGLRHSDIQTLRWKQIQQTSKGTWQAVV 301 Query: 225 KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284 QKT + ++L + P E A+ S K +G+ K Sbjct: 302 IQQKTKRPDYKPVIQQALQLCGIRPDDDEALVFEGLTD---ASWISRPLKVWIEASGIKK 358 Query: 285 --SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 + H R A++ + G + + + G V + YT + + Sbjct: 359 HITFHCGRHSYASLLLENGVDIYTIKSLMGHTNVKTTQIYTHIVNEQK 406 >gi|119869100|ref|YP_939052.1| phage integrase family protein [Mycobacterium sp. KMS] gi|119695189|gb|ABL92262.1| phage integrase family protein [Mycobacterium sp. KMS] Length = 407 Score = 97.4 bits (241), Expect = 3e-18, Method: Composition-based stats. Identities = 52/285 (18%), Positives = 98/285 (34%), Gaps = 37/285 (12%) Query: 64 PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI-IRKSGDFDYRKITTKHIRSG 122 P+ T + + ++ + A + + S D + + + D R ++ + ++ Sbjct: 79 PKLSGVTFGVIAERWIQTKA--TRAPKTVAGYRSLLDVVVLPRWRDVPLRDVSFEDLQQW 136 Query: 123 -----------VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171 E R +PS IQ + + ++AV+ +++ NP +E P++ Sbjct: 137 VSGLSVNGSTRFEGRGLSPSRVIQAHQVVSQVLRYAVKAKHLPANPADGIELPRKPEVEQ 196 Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ------------- 218 R T E +Q+ + R L Y GLR ++ V + Sbjct: 197 RYLTHEQLQRLAV---ASGRFRTFVLVLGYCGLRFGEAAALRVGDVNLSSRRIRIRRSVT 253 Query: 219 ---NNIFSIKTQKTGTIITVELPDGFMKLLAM---TPIGKETFFINNDKQKMNATQFSIW 272 K + TV +P L+ + E F + + + Sbjct: 254 AVTGQGLVEGPTKNHSARTVPVPKFLAPLIETEVGGRVDDELLFPSRRGGYLTEGEVRWV 313 Query: 273 FKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTV 316 F A A GV + H +R A+++ AGA L G KT Sbjct: 314 FDAAAVAVGVTGLTPHELRHTCASLAIAAGANVKVLQTLLGHKTA 358 >gi|322517694|ref|ZP_08070557.1| phage integrase family site-specific recombinase [Streptococcus vestibularis ATCC 49124] gi|322123682|gb|EFX95274.1| phage integrase family site-specific recombinase [Streptococcus vestibularis ATCC 49124] Length = 384 Score = 97.4 bits (241), Expect = 3e-18, Method: Composition-based stats. Identities = 61/366 (16%), Positives = 116/366 (31%), Gaps = 57/366 (15%) Query: 11 VTKERTRHGKIIYYF-------RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS 63 + K +T+ G I+YY G +R Y + L Sbjct: 3 IHKYKTKKG-ILYYVSFYIGLDAYGKKKRHLKRGFKTKKEAKLYEARLEAGVVAPTVSTD 61 Query: 64 PRKKPTTLKWL----ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119 T K L + Y + + + ++ + + I GD +I+ Sbjct: 62 KPNPKVTYKELYQEWFNAYVGTVEETT-SSQTKNIYRIHILPI---FGDKFIDQISPLDC 117 Query: 120 RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK-RKTEGIRPWTKED 178 ++ + T + Q + +F +A+ Y+ NP +V PK +KT W+ E+ Sbjct: 118 QNFITQNSQTFKNIKQIKSYTSKIFDFAINMNYIDRNPMKNVIMPKIKKTRSDNFWSLEE 177 Query: 179 MQQFKSFWS--EGSQPRLAFEFLLYSGLRCSDSCRAGVQH----------------LQNN 220 + F E + F L +SGLR + + Sbjct: 178 LHHFLDIVKETEPFKHFALFRLLAFSGLRKGELYALKWADINFDSNLLNIDKSLGRIDGK 237 Query: 221 IFSIKTQKTGTIITVELPDGFMKLLA-----------MTPIGK--------ETFFINNDK 261 T+ ++ T+ L D + ++ P+ K ++ +NDK Sbjct: 238 AIEKSTKNESSVRTIYLDDETIDIIKQWRNFYLKEQSQLPLTKLNISNEYMFSYISSNDK 297 Query: 262 -QKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319 + ++A + K + S HG R AT+ ++ G G + Sbjct: 298 IEPLHADYINNVLNRIIKKHKLKPISPHGFRHTHATLMSEIGIDPSNTSKRLGHASSQMT 357 Query: 320 -ETYTK 324 + YT Sbjct: 358 LDVYTH 363 >gi|126733327|ref|ZP_01749074.1| tyrosine recombinase [Roseobacter sp. CCS2] gi|126716193|gb|EBA13057.1| tyrosine recombinase [Roseobacter sp. CCS2] Length = 304 Score = 97.4 bits (241), Expect = 3e-18, Method: Composition-based stats. Identities = 37/263 (14%), Positives = 83/263 (31%), Gaps = 27/263 (10%) Query: 88 AVNSRISFESYFDQII--------RKSGDFDYRKITTKHIRSGVES---RKHTPSSAIQF 136 A N+ ++++ + G ++T + +R+ + R S + Sbjct: 24 AENTLKAYQTDVMGFLAFMTQYNGESQGLAPIARVTVRDMRAWMAHERGRGIGARSLARS 83 Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT-------KEDMQQFKSFWSEG 189 L++++ ++W +E LS PK + + RP + ++ + Sbjct: 84 LSAVKSFYRWLAEREGFEPTAVLSTRAPKFQRKLPRPLEVNAASAMIDTVELQANEPWVA 143 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM-- 247 ++ L GLR S++ + K G V + + +A Sbjct: 144 ARDAAVVTLLYGCGLRISEALGLTSVDVPLPEVLRIVGKGGKERIVPVIAEAREAVATYV 203 Query: 248 -----TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADA 300 + F ++ + + G+ +A H +R AT A Sbjct: 204 RLCPYPVAQDQPIFRAVRGGILSPRAIQKVMEQARLQLGLPATATPHAMRHSFATHLLAA 263 Query: 301 GATAHELMATYGWKTVDQAETYT 323 G + G ++ + YT Sbjct: 264 GGDLRAIQELLGHASLSTTQAYT 286 >gi|258539251|ref|YP_003173750.1| phage-related integrase [Lactobacillus rhamnosus Lc 705] gi|257150927|emb|CAR89899.1| Phage-related integrase [Lactobacillus rhamnosus Lc 705] Length = 382 Score = 97.4 bits (241), Expect = 3e-18, Method: Composition-based stats. Identities = 57/313 (18%), Positives = 111/313 (35%), Gaps = 46/313 (14%) Query: 70 TLKWLISE----YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125 T L ++ Y ++ GS A ++ F ++ I G I T I+S V Sbjct: 68 TFSDLYNQWWPIYVQTVE-GSTAYKTKQLFHNHL---IPMFGSKTLTAIKTGSIQSAVSQ 123 Query: 126 RKHTPSSAIQ-FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP--WTKEDMQQF 182 + T + A + ++ + +AV+ +Y+ NP VE P+ G P W + + +F Sbjct: 124 WRETTTKAYKERFIYLKKILSFAVKMQYIEKNPADGVELPRGVGSGKSPVYWDNKQVARF 183 Query: 183 KSFWSEGSQP--RLAFEFLLYSGLRCSDSCRAGVQHLQ----------------NNIFSI 224 + + P F ++ +G+R + C V + N SI Sbjct: 184 LTCIDPNNDPEKYTMFLLMVSTGIRREELCALNVSDVNFKTSTLSINKAYATGLNGKESI 243 Query: 225 KTQK-TGTIITVELPD----GFMKLLA-------MTPIGKETFFIN--NDKQKMNATQFS 270 K K T + T+ L K +A ++ F + + ++++ + + Sbjct: 244 KGTKSTAGMRTIPLTPKVTIQLKKWIALLDASKIISIRDDRPLFPSPQHFEKRLGINRPN 303 Query: 271 IWFKAKATK--AGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 W K + HG+RK T +G + G T D G ++ Sbjct: 304 KWLKDIIEANHLSPRITLHGLRKSFVTNMIRSGVDVSTVQRLAGHSTPDVTLRIYAGMNQ 363 Query: 329 IRLGIKNSRRISS 341 + +++ Sbjct: 364 SD-AREGIDKLAE 375 >gi|239905577|ref|YP_002952316.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1] gi|239795441|dbj|BAH74430.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1] Length = 372 Score = 97.4 bits (241), Expect = 3e-18, Method: Composition-based stats. Identities = 45/272 (16%), Positives = 88/272 (32%), Gaps = 31/272 (11%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQI-IRKSGDFDYRKITTK--------HIRS 121 L L S+Y + E + I GD +T + H + Sbjct: 86 LSELGSKYLAHMKASGRTEKHIRNIEHLVHHVFIPVLGDKPVDSLTYQEDMIPFILHFQG 145 Query: 122 GVESRK--HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW----T 175 + + ++ + +F + + + ++NP + ++PK + PW T Sbjct: 146 VSSRTGKVRSQYTVNKYCDYLSFIFNFGIDNGFTSVNPLKNWKKPKVQ-----PWDMKLT 200 Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSD--SCRAGVQHLQNNIFSIK--TQKTGT 231 +D ++ + A E G R + + + +++ KT T Sbjct: 201 LDDAKKIMVNAEP--HLKWAMEVCFNLGTRPGESELLSLKWEDIDFKASTVRIYASKTKT 258 Query: 232 IITVELPDGFMKLLAMTPIGKETFFINND-KQKMNATQFSIWFKAKATKAGVNK--SAHG 288 TV + F+K L +T ++ +K+ FK +AG+ + Sbjct: 259 YRTVPINPEFLKRLEKEQAESQTGYVIEYMGRKLT--TIRKAFKNACKRAGITYQTRMYD 316 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAE 320 +R AT GA + G TV Sbjct: 317 LRHLFATTLLRKGADLAAVSKMMGHSTVKMTA 348 >gi|189463345|ref|ZP_03012130.1| hypothetical protein BACCOP_04062 [Bacteroides coprocola DSM 17136] gi|189429964|gb|EDU98948.1| hypothetical protein BACCOP_04062 [Bacteroides coprocola DSM 17136] Length = 418 Score = 97.4 bits (241), Expect = 3e-18, Method: Composition-based stats. Identities = 36/226 (15%), Positives = 73/226 (32%), Gaps = 11/226 (4%) Query: 111 YRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170 +R+ + G + + ++A + + + K A Y+ I+ V+ + + Sbjct: 183 FRQFIMNAPQGGTKRGTISQNTASTYFSIFKAGLKQAFIDGYLTIDIAAKVKGIQERESR 242 Query: 171 IRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ----NNIFSIKT 226 T E++ + + R A L +G+R D + ++ + Sbjct: 243 REYLTIEELNRLAQTPCDPLLKRAALFSAL-TGIRHCDIQKLKWSEVEQFNGGYRLNFTQ 301 Query: 227 QKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-- 284 QKT + + + + L G+ F K AG+ K Sbjct: 302 QKTKGVEYMPISEQAYNLCGEQKEGELLVFAGLPDPSWINRP----VKKWVEAAGITKHI 357 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 + H R AT+ G + + G V + Y K D + Sbjct: 358 TFHCFRHSYATLQLAGGTDIYTVSKMLGHTNVRTTQVYAKVVDEKK 403 >gi|239930698|ref|ZP_04687651.1| integrase [Streptomyces ghanaensis ATCC 14672] gi|291439062|ref|ZP_06578452.1| integrase [Streptomyces ghanaensis ATCC 14672] gi|166078058|gb|ABY81078.1| Int1 [Streptomyces ghanaensis] gi|291341957|gb|EFE68913.1| integrase [Streptomyces ghanaensis ATCC 14672] Length = 376 Score = 97.4 bits (241), Expect = 3e-18, Method: Composition-based stats. Identities = 55/343 (16%), Positives = 103/343 (30%), Gaps = 36/343 (10%) Query: 19 GKIIYYFRKGHGRRIR-LPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISE 77 G+ +R ++R + + S R + P + Sbjct: 20 GRWQVRYRDPETGQLRPAEKTYATKTDAQVALTHIESDIVRGQWSDPDAGAVNFGEYATA 79 Query: 78 YRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR---KHTPSSA 133 + + LA +R ES I+ G +TT +R + Sbjct: 80 WLRD---RKLADRTRERNESVMRLHILPTFGAGSVADVTTARVRGWRGKLLAAGVGEPTV 136 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193 ++ +R L AV E + NPC + T ++ F S + R Sbjct: 137 VKAYQLLRALMNTAVDDELIRRNPCRIKGADRYDVPERPVLTVAEV--FAVADSIAPRYR 194 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII-----------------TVE 236 L ++ LR + + + ++ ++ + +V Sbjct: 195 LLVLLAAFTTLRFGELAALRRRDIDQEGLTVTVRRAQAELQDGRLFDKAPKSAAGVRSVS 254 Query: 237 LPDGFMKLLA------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHG 288 P + +A P F+ ++ + F + AGV H Sbjct: 255 FPAELLDAVAHHLEHFAAPGRDGHVFVGPQGGQLRRSNFRDDWVKAREAAGVTAELHFHD 314 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIR 330 +R T+++ AGA+ ELM G + A Y +DR R Sbjct: 315 LRHTGNTLASTAGASTRELMTRMGHSSSRAALIYQHMTSDRDR 357 >gi|325473780|gb|EGC76968.1| tyrosine recombinase xerC [Treponema denticola F0402] Length = 305 Score = 97.4 bits (241), Expect = 3e-18, Method: Composition-based stats. Identities = 49/284 (17%), Positives = 98/284 (34%), Gaps = 36/284 (12%) Query: 76 SEYRK-SAHWGSLAVNSRISFES---YFDQIIRKSGDFDYRKITTKHIRSGVESRKHT-- 129 Y SA + S+++ F++ +++ D + ++ IR + Sbjct: 6 ESYLTYSAGVRQFTKATIDSYKNDLIIFEEWLKEL-DLNVFELKASDIRIFIAELADKKI 64 Query: 130 -PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 P+S + ++++R +K+A+R INP SV K + + Q+F S Sbjct: 65 APASINRMMSTLRGFYKYALRFNLTKINPISSVRNLKLAQKLPVFMFPKQAQEFCRLPSN 124 Query: 189 G-----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-FSIKTQKTGTIITVELPDGFM 242 ++ F L +G R S+ ++ L + ++I K V + Sbjct: 125 AGILWETRDAALFASLYSTGCRVSELAGLDIKDLDKTLSYAIVFGKGKKERKVFFAEFAK 184 Query: 243 KLLAMTPIGKETFF------INNDKQKMNATQFSIWFKAKATKA-GV------------- 282 + L + + + D + I KA+A + G+ Sbjct: 185 EYLKIYLQERTDLVEKFKGQVQKDGKGKIRDALFINQKAQALTSRGIRYIINRYVELSPE 244 Query: 283 --NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 + S H R A+ GA + G ++V + YT Sbjct: 245 LKHLSPHAFRHSFASTLITRGADIRVVQELLGHESVSTTQRYTH 288 >gi|240172534|ref|ZP_04751193.1| phage integrase family protein [Mycobacterium kansasii ATCC 12478] Length = 368 Score = 97.4 bits (241), Expect = 3e-18, Method: Composition-based stats. Identities = 52/309 (16%), Positives = 104/309 (33%), Gaps = 43/309 (13%) Query: 45 PAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI-I 103 AY+ LTG + Y++ PRK T + ++ + G + + S D + + Sbjct: 22 QAYLDGLTGDIQRGAYVD-PRKSAETFGSVAEQWFATK--GHRKPKTVAGYRSILDALAL 78 Query: 104 RKSGDFDYRKITTKHIRSGVE------SRKHTPSSAIQFLTS---MRVLFKWAVRQEYVA 154 K + ++I + + + S + T SA + + + + K+A R ++ Sbjct: 79 PKWAEVPLKQIDYQAYSTWLGGLAVDGSLRGTALSASRITQAHQLVGAVLKYAQRTGKIS 138 Query: 155 INPCLSVER----PKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL-YSGLRCSDS 209 N ++R P R ++ Q + +L Y GLR ++ Sbjct: 139 RNVAAEIKRSEDLPVPVERERRYLNHAELLQLAK----ATLRFETLTLVLGYCGLRFGEA 194 Query: 210 CRAGVQHLQNNIFSIK--------------TQKTGTIITVELP----DGFMKLLAMTPIG 251 +H+ + ++ T KT V +P D L P Sbjct: 195 AALRRKHVGDRELLVRSSATYVTGRGIVESTTKTNRARHVPIPGPVWDRLQPELPSDP-- 252 Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMAT 310 F ++ + ++ F G+ H +R +A+++ AGA + Sbjct: 253 NALVFPSHRGGHLPIEEYRRAFDKGCNAVGIAGLVPHALRHTTASLAISAGANVKVVQRL 312 Query: 311 YGWKTVDQA 319 G T Sbjct: 313 LGHATAAMT 321 >gi|254513132|ref|ZP_05125198.1| phage integrase family protein [Rhodobacteraceae bacterium KLH11] gi|221533131|gb|EEE36126.1| phage integrase family protein [Rhodobacteraceae bacterium KLH11] Length = 236 Score = 97.4 bits (241), Expect = 3e-18, Method: Composition-based stats. Identities = 33/170 (19%), Positives = 59/170 (34%), Gaps = 9/170 (5%) Query: 166 RKTEGIRPWTKEDMQQFKSFWS-EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--F 222 + + + E++ + + G + R A +GLR S+ C + ++ Sbjct: 40 QPRKLPAVLSAEEVSELLAVAPGPGLKYRAALSISYGAGLRASEVCNLTAGDIDSDRVLI 99 Query: 223 SIKTQKTGTIITVELPDGFMKLLA---MTPIGKETFFINNDK-QKMNATQFSIWFKAKAT 278 + K V L + LL + F K ++ Q + F + Sbjct: 100 HVVQGKGRKDRKVMLSPDLLDLLRDYWCEARPEGWLFPGKPKINPISPRQLNRAFTSAKR 159 Query: 279 KAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 AG+NK + H +R AT +AG + G + YTK A Sbjct: 160 MAGINKPATLHTLRHSFATHLLEAGTDVRVIQVLLGHAKLTTTAQYTKVA 209 >gi|188590222|ref|YP_001919587.1| phage integrase [Clostridium botulinum E3 str. Alaska E43] gi|188500503|gb|ACD53639.1| phage integrase [Clostridium botulinum E3 str. Alaska E43] Length = 389 Score = 97.0 bits (240), Expect = 3e-18, Method: Composition-based stats. Identities = 60/403 (14%), Positives = 135/403 (33%), Gaps = 81/403 (20%) Query: 7 LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR- 65 +P + ++R +G +++R H L P + L T K + Sbjct: 1 MPKSIYRKRVINGTEYFFYRLRHD---NLRKPKD----------LYARTEKELKAKIKKL 47 Query: 66 ---------KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR--KSGDFDYRKI 114 + SE+ + + +++I +E+ + I+ + D +++ Sbjct: 48 NYELDHNIQSNKNSFGVFFSEWLFDIKFMEIKPSTKIKYETVYRNHIKNSEISDIKIKEL 107 Query: 115 TTKHIRSGVES--RKHTPSSAIQFLTSMRVLF-KWAVRQEYVAIN-------PCLSVERP 164 T+K I+ + +K ++ ++ + + K+A +++ + P E+ Sbjct: 108 TSKDIQIYYNNLIKKGKSTTLVKTIHKLIAPCIKYAYNNDFIIKDFTGSLIIP-KETEKD 166 Query: 165 KRKTEGIR-PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS 223 K E P+T E+ ++F G++ F L SGLR + + Sbjct: 167 KLNKESSVIPFTLEEQKEFIKAIK-GNKFEALFITALNSGLREGELLALTWNDINLKEKY 225 Query: 224 I---------------------------KTQKTGTIITVE-----LPDGFMKL------- 244 I KT+K +++ + + K Sbjct: 226 INVNKNLGVVTEVSKDGRGVSKLEVQTPKTRKGKRQVSIPNFLITVLKEYKKQQSKNRLK 285 Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGAT 303 LA F + +N + + +K ++ + + H +R AT + G Sbjct: 286 LANKYTNNNLIFCDEYGNYLNRDKVTYQYKKLLKESKIKTRKFHDLRHTYATRLFELGEQ 345 Query: 304 AHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSVVDS 345 A + G V TYT D ++ K ++ ++ ++ Sbjct: 346 ARTVQELLGHSDVSVTLNTYTHVLDDMK--EKAVSKLDNLFNA 386 >gi|167762266|ref|ZP_02434393.1| hypothetical protein BACSTE_00619 [Bacteroides stercoris ATCC 43183] gi|167699909|gb|EDS16488.1| hypothetical protein BACSTE_00619 [Bacteroides stercoris ATCC 43183] Length = 373 Score = 97.0 bits (240), Expect = 3e-18, Method: Composition-based stats. Identities = 48/231 (20%), Positives = 89/231 (38%), Gaps = 13/231 (5%) Query: 110 DYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169 +R+ + ++RK +SA + ++ R R + NP +ER + Sbjct: 139 RFREYLLTAPQGLHKNRKLHINSAANYWSTFRASIHITYRDRKIKENPNGFLERIETIPT 198 Query: 170 GIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIK 225 +++++ + S + AF F + LR SD + + + + + + Sbjct: 199 DKEHLSQDEVIRLASTPCSAPALKRAFLFSCLTALRKSDIKKLTWEEIQPYGSDGVMYVT 258 Query: 226 T--QKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283 T QKT I+ + + ++L+ +P + F + K M W K AG+ Sbjct: 259 TRMQKTKDIVHNPISEEALELIGYSPDKRGKVFP-DFKDSMTQAPLKNWLKD----AGIT 313 Query: 284 K--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 K S H R A + DAG + + G K V E Y K +D + Sbjct: 314 KHISYHCSRHSFACLQLDAGTSIAVVQRYLGHKNVATTEVYAKISDAQKRA 364 >gi|323143711|ref|ZP_08078381.1| site-specific recombinase, phage integrase family [Succinatimonas hippei YIT 12066] gi|322416514|gb|EFY07178.1| site-specific recombinase, phage integrase family [Succinatimonas hippei YIT 12066] Length = 355 Score = 97.0 bits (240), Expect = 3e-18, Method: Composition-based stats. Identities = 48/287 (16%), Positives = 96/287 (33%), Gaps = 32/287 (11%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH 128 + L+ Y + L +N+ ++ +I+ D I+ IR Sbjct: 57 SFSSLVDAYFEDMA-HRLKLNTIMTKRQIVTTKILPYFKDKAVCDISAVDIRKWQAVMIS 115 Query: 129 TPSSAIQFLTS---MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR-PWTKEDMQQFKS 184 +S T + +F +AVR + +NPC K + WT E+ + F Sbjct: 116 KGNSETYLRTINNQLSTIFNYAVRFYDLKVNPCTKAGSIGSKNAVSKDFWTVEEFKTFAD 175 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK-----TGTII------ 233 + + F L ++G+R + V+ ++ K G + Sbjct: 176 GLYDNWDAYIGFNLLFWTGMRIGELLALNVKDFDLKAKTVSISKSYQRIKGKDVITKPKT 235 Query: 234 -----TVELPDGFMKLLAMTPIGKETFFINNDKQ--KMNATQFSIWFKAKATKAGVNK-S 285 V LP+ ++ L + +N+ + F+ + + GV K Sbjct: 236 LNSTRVVSLPNFLIEDLEDYFS--HIYEVNDRYRLFPYTKHYFNYEMQQVCKRTGVKKIR 293 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQ-----AETYTKGAD 327 H +R A++ + G A + G K ++ + Y + D Sbjct: 294 LHDLRHSHASLLVNMGLGAKVIADRLGHKRIETTLNTYSHLYKRTQD 340 >gi|315505932|ref|YP_004084819.1| integrase family protein [Micromonospora sp. L5] gi|315412551|gb|ADU10668.1| integrase family protein [Micromonospora sp. L5] Length = 353 Score = 97.0 bits (240), Expect = 3e-18, Method: Composition-based stats. Identities = 54/313 (17%), Positives = 110/313 (35%), Gaps = 44/313 (14%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFD---QIIRKSGD-----FDYRKITTKHIRS 121 T+ LI E+ + + ++ ++ +++ +GD ++ K +R+ Sbjct: 32 TVGALIEEFLTARATRKPSPHTLAAYRRDLTTVAELVAAAGDASPLRLPVSTLSPKVMRA 91 Query: 122 GVESRKHTPSSAI--QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW----T 175 ++A + ++ F + V + V NP +V RP+ +P T Sbjct: 92 AFARFAGPRAAASVHRAWSTWNSFFTFLVAEGVVPGNPMPAVGRPRTPLPRPKPLRGEDT 151 Query: 176 KEDMQQF------KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT--- 226 E++ + + L +GLR S+ V + + Sbjct: 152 PEELLAAVARAEGRQRDPWPERDLAVLALALCAGLRLSELLALRVSSVAGRDGERRVDVA 211 Query: 227 QKTGTIITVELPDGFMKLLA------------MTPIGKETFFINNDKQKMNATQFSIWFK 274 K G TV + DG ++LA + F ++ + + + Sbjct: 212 GKGGRPRTVPIEDGVDRVLAGYLDSRRLRFGSRSVRPDSPFLVDRQGEALRRGGLQYLVE 271 Query: 275 AKATKAGVN------KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY---TKG 325 + +AG+ H +R AT A+ GA+A E+M G ++ ++TY T G Sbjct: 272 SCYRRAGIGDRVPRGARLHALRHTFATRLAEDGASAAEIMRLLGHASLASSQTYIEVTAG 331 Query: 326 ADRIRLGIKNSRR 338 R + + R Sbjct: 332 QQRAAVAANRTNR 344 >gi|150017497|ref|YP_001309751.1| phage integrase family protein [Clostridium beijerinckii NCIMB 8052] gi|149903962|gb|ABR34795.1| phage integrase family protein [Clostridium beijerinckii NCIMB 8052] Length = 325 Score = 97.0 bits (240), Expect = 3e-18, Method: Composition-based stats. Identities = 43/323 (13%), Positives = 103/323 (31%), Gaps = 51/323 (15%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFE-SYFDQIIRKSGDFDYRKITTKHIRSGVESRKH 128 +LK ++ + + + + I + + +I G+ + H+ + + Sbjct: 2 SLKTYLNMWLEDYVKEERSERTYIIYRDTMLKHVIPCIGNIKLSDLKVVHVEKYLRELRK 61 Query: 129 TPSSAIQFLT----SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK- 183 ++ + +++ AV+ + + NPC VE PK+ T E+ Sbjct: 62 IKNNNGSTIQLNFRNLKTALNKAVKLQLLNDNPCRFVEMPKKNNFKGNYLTAEEFNLIYN 121 Query: 184 ---SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK---TGTIIT--- 234 + GS R+ + + +G R + C +++ + +I K G Sbjct: 122 SLNAATYLGSSFRVLLDLAVETGCRRGEMCGTEWRNIDFDNKTITFDKALIKGEHGWKIG 181 Query: 235 ----------VELPDGFMKLLAMTPIGK---------------------ETFFINNDKQK 263 + L D + L I + + I + + Sbjct: 182 RLKTETSYRALPLSDDLINQLKKLRIKQLENKLTFGSEYHLNSFDGIEYDLICIQRNGKF 241 Query: 264 MNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE- 320 M K + ++K H +R SAT+ + G + G ++ Sbjct: 242 MVPNDVRDRLKYLLKRNKIDKNIRWHDLRHTSATLLLENGVAMKTIQKRLGHASMSTTSD 301 Query: 321 TYTKGADRIRLGIKNSRRISSVV 343 Y+ + ++ + + +S + Sbjct: 302 IYSHVTE--KMDREATNILSRTI 322 >gi|148285154|ref|YP_001249244.1| site-specific tyrosine recombinase XerC [Orientia tsutsugamushi str. Boryong] gi|146740593|emb|CAM81243.1| tyrosine recombinase XerC [Orientia tsutsugamushi str. Boryong] Length = 312 Score = 97.0 bits (240), Expect = 3e-18, Method: Composition-based stats. Identities = 45/283 (15%), Positives = 98/283 (34%), Gaps = 30/283 (10%) Query: 71 LKWLISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGD-FDYRKITTKHIRSGVESRKH 128 L+ +I+E+ ++ + ++N+ S+ + Q + D + ++ T H+ S Sbjct: 7 LEKIITEWLNHLKNYKNYSINTCNSYNNDLQQFLNFIVDYCNLSELKTSHLCSVDIRLMR 66 Query: 129 TPSSAIQFLT-----------SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177 + S L S+R +K+ +Q + +V PK + E Sbjct: 67 SWLSQRYNLQYNSSSNSRALSSVRNFYKYLFKQHNLVNKIISAVRSPKLAKRLPKALDIE 126 Query: 178 -------DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230 ++ + G++ + L GLR S++ L++ IK K Sbjct: 127 DTVACTTEINNIANDKWIGARDKALLFLLYGQGLRISEALSVTKVSLKSESLIIK-GKGN 185 Query: 231 TIITVELPD-------GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283 I + D ++ L+ + F+ +K+ F + + Sbjct: 186 KIRLIPWLDITKQLVSDYVNLVPYSLTENSPLFVGKRGKKLQPAVFGRHLIKLRRQLNLP 245 Query: 284 --KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 + H R A+ + GA + G +++ + YTK Sbjct: 246 ESLTPHTFRHCFASHLLNNGADLRSIQELLGHQSLSSTQIYTK 288 >gi|262068300|ref|ZP_06027912.1| integrase/recombinase, phage integrase family [Fusobacterium periodonticum ATCC 33693] gi|291377988|gb|EFE85506.1| integrase/recombinase, phage integrase family [Fusobacterium periodonticum ATCC 33693] Length = 329 Score = 97.0 bits (240), Expect = 3e-18, Method: Composition-based stats. Identities = 37/277 (13%), Positives = 94/277 (33%), Gaps = 15/277 (5%) Query: 59 EYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH 118 + + R + +++L + + H + S +++ + + +K D + ITT Sbjct: 40 KKEGADRDEKQNIEYL-EAFLSAKHVEGCSRKSLKYYKATIENLFKKI-DKSIKHITTND 97 Query: 119 IRSGVESRKHTPSS----AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174 +R +++ + ++ F W ++Y+ +P + + K T + Sbjct: 98 LREYLDNYQKEGNASKITIDNIRRIFSSFFAWLEEEDYILKSPVRRIHKVKTGTVVKETY 157 Query: 175 TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTII 233 + E M+ + + + L +G+R + + ++ + + K Sbjct: 158 SDEAMEIMRDNCKS-LRDLAIIDILASTGMRVGELVKLNIEDIDFEGRECVVFGKGDKER 216 Query: 234 TVELPDG----FMKLLAMTPIGKETFFIN--NDKQKMNATQFSIWFKAKATKAGVNK-SA 286 V L F++ +++ + I + K + K Sbjct: 217 KVYFDARTKIHLHNYLKTRDDDNSALFVSLLKPHKRLQISGVEIMLRQLGRKLNITKVHP 276 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 H R+ AT + D G ++ G + +D Y Sbjct: 277 HKFRRTLATKAIDKGMPIEQVQQLLGHQKIDTTLQYA 313 >gi|229916806|ref|YP_002885452.1| integrase family protein [Exiguobacterium sp. AT1b] gi|229468235|gb|ACQ70007.1| integrase family protein [Exiguobacterium sp. AT1b] Length = 287 Score = 97.0 bits (240), Expect = 3e-18, Method: Composition-based stats. Identities = 39/226 (17%), Positives = 77/226 (34%), Gaps = 11/226 (4%) Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 + + S P + +L+++R L+ WA+ ++ V NP + + T D Sbjct: 58 YITALRSEGCQPVTINNYLSALRGLYDWAITEQLVTHNPFHHLRVKVTERPPSDVPTPSD 117 Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN--IFSIKTQKTGTIITVE 236 + + R L++G+R ++ + + + N + I KTG V Sbjct: 118 LHRVIDAIDVPLY-RTFLTLQLHTGMRINEVRQLTLDAIDLNARLLYIHESKTGKPRKVP 176 Query: 237 LPDGFMKLL------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATK-AGVNKSAHGV 289 L D ++ I F + + T + K A G + ++H + Sbjct: 177 LNDVTHAMMTTYLEEERRCIDSPYVFPSARGDLICKTTINRHLKRAAEDVLGTSVTSHTL 236 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIK 334 R + D G L G Y + D +R ++ Sbjct: 237 RHAFTSHLYDMGVKETTLSELLGHSEPKTTRRYIRVREDHLRDAVE 282 >gi|298375507|ref|ZP_06985464.1| integrase [Bacteroides sp. 3_1_19] gi|298268007|gb|EFI09663.1| integrase [Bacteroides sp. 3_1_19] Length = 330 Score = 97.0 bits (240), Expect = 3e-18, Method: Composition-based stats. Identities = 35/282 (12%), Positives = 95/282 (33%), Gaps = 21/282 (7%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHT 129 L++ + + + + + + ++++ ITT IR+ + E + + Sbjct: 55 LLNSFISAKKIEGCSEKTLTYYRNTIERLLVTL-SLAICHITTTDIRTYLSDYQEEHQSS 113 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 + F W ++Y+A +P + + K + + E ++Q + + Sbjct: 114 KVTIDNMRRIFSSFFAWLEDEDYIAKSPVRRIHKVKTDSLVKEVLSDEQLEQLRDSCTT- 172 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT----QKTGTIITVELPDG----F 241 + +FL +G+R + + + + F + K V Sbjct: 173 KRDLAIIDFLSSTGIRVGELVKLSREDID---FHERQCVVFGKGNKERVVYFNARTKLHL 229 Query: 242 MKLLAMTPIGKETFF--INNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISA 298 + L F +N+ ++ + + + + K H R+ AT++ Sbjct: 230 QQYLNERTDSNPALFVSLNSPHSRLTISGVEVRIRKMGQALSMPKVHPHKFRRTLATMAI 289 Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340 D G ++ G +D Y ++ + + + + + Sbjct: 290 DKGMPIEQVQRLLGHVRIDTTLHYA-IVNQNNVKLAHKKYLG 330 >gi|154504412|ref|ZP_02041150.1| hypothetical protein RUMGNA_01916 [Ruminococcus gnavus ATCC 29149] gi|153795341|gb|EDN77761.1| hypothetical protein RUMGNA_01916 [Ruminococcus gnavus ATCC 29149] Length = 237 Score = 97.0 bits (240), Expect = 3e-18, Method: Composition-based stats. Identities = 39/233 (16%), Positives = 80/233 (34%), Gaps = 34/233 (14%) Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG------- 189 ++++R + + + + + NP L V+ PK + I +++ F G Sbjct: 1 MSALRSFYGYYFKHQIIEKNPTLFVDMPKLHEKAIVRLDTDEVASLLDFVEHGGDELTGQ 60 Query: 190 ---------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELP 238 ++ LL +G+R S+ +Q + NN ++ +K G + + Sbjct: 61 KKVYYEKTKNRDLAIITLLLGTGIRVSECVGLDIQDVDFKNNGITV-VRKGGNEMVIYFG 119 Query: 239 DGFMKLLA-----------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--S 285 + L P + F++ +++M K A + NK + Sbjct: 120 EEVEHALKQYLYTTREAATPLPGHENALFLSTQRRRMGVQAVENMVKKYARQVTPNKKIT 179 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK-GADRIRLGIKNS 336 H +R T + + G K V+ + Y DR R+ K Sbjct: 180 PHKLRSTYGTTLYKETGDIYLVADVLGHKDVNTTKKHYAAIDEDRRRMAAKAV 232 >gi|153805908|ref|ZP_01958576.1| hypothetical protein BACCAC_00148 [Bacteroides caccae ATCC 43185] gi|149130585|gb|EDM21791.1| hypothetical protein BACCAC_00148 [Bacteroides caccae ATCC 43185] Length = 328 Score = 97.0 bits (240), Expect = 3e-18, Method: Composition-based stats. Identities = 40/262 (15%), Positives = 87/262 (33%), Gaps = 14/262 (5%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----KHT 129 L+ + + + NS + S + + K G + ITT +R + + + Sbjct: 53 LVENFISAKKVEGCSPNSIAYYRSTINNALIKLG-KEVIHITTDDLRHYLNTYQSESGAS 111 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 + + F W + Y+ +P + + K +T E ++ + S Sbjct: 112 KVTVDNIRRILSSFFSWLEEENYIVKSPVRRIHKVKVGKTVKETYTDESLELMRDHCS-N 170 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDG----FMKL 244 + + L +G+R + + + +N I T K V K Sbjct: 171 PRDLALIDLLASTGMRVGELVKLNRSDIDYHNRECIVTGKGDKQRKVYFDARTKIHLQKY 230 Query: 245 LAMTPIGKETFFIN--NDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAG 301 + E F++ ++ + I + + K H R+ AT++ D G Sbjct: 231 INSRTDNNEALFVSLLAPYDRLQISGVEIRLRQMGKDLNIPKVHPHKFRRTLATMAIDKG 290 Query: 302 ATAHELMATYGWKTVDQAETYT 323 ++ G +++D Y Sbjct: 291 MPIEQVQHLLGHQSLDTTLQYA 312 >gi|72537678|ref|YP_293708.1| prophage integrase [Burkholderia phage phi52237] gi|72398368|gb|AAZ72603.1| prophage integrase [Burkholderia phage phi52237] Length = 441 Score = 97.0 bits (240), Expect = 3e-18, Method: Composition-based stats. Identities = 43/320 (13%), Positives = 100/320 (31%), Gaps = 23/320 (7%) Query: 18 HGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISE 77 ++ G RIR ++A S R+ R T + Sbjct: 56 KNGPWWFDLSIDGSRIRQSSGTSDRRAAEELAAKVASDYWRQKKLGERPA-VTWDAAVVH 114 Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH--------T 129 + K + S + + + + + R I + I++ +E++ Sbjct: 115 WLK----QNQHQRSLETTKQRLRWLTDQLKGENVRNIDRERIQALIETKAAEKYRGSPVA 170 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 ++ + + ++ V+ + ++ P + + + + + T+ Q+ Sbjct: 171 GATVNRHMAALSVILHHCHAEGWIDAVP--PIRKLRENSARLTWLTRAQAQRLLEELP-- 226 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQKTGTIITVELPDGFMKLL 245 + R F L +GLR S+ + K G +I+V L + + +L Sbjct: 227 THLRQMARFALATGLRESNVRLLEWAQVDRERALAWIHADQAKAGKVISVPLNEDALGVL 286 Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATA 304 + + + ++ ++ +AG+ H +R A+ AG Sbjct: 287 REQQGQHKRYVFVYKGAPIGRI-YNHAWQKACVRAGLSGLRFHDLRHTWASWHVQAGTPL 345 Query: 305 HELMATYGWKTVDQAETYTK 324 L GW + Y Sbjct: 346 PILQQLGGWASYQMVLRYAH 365 >gi|167621189|ref|ZP_02389820.1| Fels-2 prophage protein [Burkholderia thailandensis Bt4] Length = 317 Score = 97.0 bits (240), Expect = 3e-18, Method: Composition-based stats. Identities = 39/294 (13%), Positives = 82/294 (27%), Gaps = 27/294 (9%) Query: 44 IPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII 103 Y+ A + + PR+ + L+ + + A+++ + Sbjct: 3 WERYIRA---KVQETPEWSPPRRDERFVVELVEIWYRH---HGAALSAGADTRRRLLAMC 56 Query: 104 RKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLT---SMRVLFKWAVRQE-YVAINPCL 159 G+ + R +A +R +F R + NP Sbjct: 57 EAMGNPRAESFSADLFAEYRTRRLEAGVTANNMNREHAYLRAMFNELGRLGHWTKENPLR 116 Query: 160 SVERPKRKTEGIRPWTKEDMQQFKSFWSEGS--QPRLAFEFLLYSGLRCSDSCRAGVQHL 217 V K + + + ++ + +EG L + L +G R ++ + Sbjct: 117 HVRAFKVQESELTYLVPQQIRGLLAALAEGRNVHVLLISKVCLATGARWGEAEGLRRTQI 176 Query: 218 QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF---SIWFK 274 + K+ +V + D + L N F S F+ Sbjct: 177 KGGQIQFVKTKSSKARSVPITDALERELIA--------HFGNYGDSDTGRLFEASSSAFR 228 Query: 275 AKATKAGV----NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 +AG+ + H +R A+ G L G ++ Y Sbjct: 229 EAVERAGLVLPDGQLTHVLRHTFASHFMMNGGNILALQRALGHHSLTMTMRYAH 282 >gi|312136007|ref|YP_004003345.1| integrase family protein [Caldicellulosiruptor owensensis OL] gi|311776058|gb|ADQ05545.1| integrase family protein [Caldicellulosiruptor owensensis OL] Length = 291 Score = 97.0 bits (240), Expect = 3e-18, Method: Composition-based stats. Identities = 41/286 (14%), Positives = 98/286 (34%), Gaps = 31/286 (10%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFD----QIIRKSGDFDYRKITTKHIRSGVESR- 126 WL ++ + + N+ S+ + + + +I + R Sbjct: 2 DWL-KKFEEDLKQTGKSQNTVASYCADINEFLQWFEETYANKFDGRILEQDAREYRNYLL 60 Query: 127 ---KHTPSSAIQFLTSMRVLFKWAVRQEY-VAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 K PSS + + S++ ++ ++ +N C + I+ +++++ + Sbjct: 61 NVVKQKPSSINRKMASLKNFNQFLIQVGTGTEVNIC-GISVADIHDREIKTISRKELNRL 119 Query: 183 -KSFWSEGSQPRLAF-EFLLYSGLRCSDSCRAGVQHLQNNI---------FSIKTQKTGT 231 ++ ++ G++ +A E L+ +G+R S+ VQ + +++ K Sbjct: 120 KRAVYASGNKRDIALIELLINTGVRVSELVSLTVQDIHLTERNGSQNYSYIAVRNGKGNK 179 Query: 232 IITVELP----DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SA 286 + L + L+ + FI+ + K AG+ + SA Sbjct: 180 YREIPLNSQVKRALEEYLSTRSSSSDKIFISQRG-PLRRESVDKIIKKYCRLAGIEEISA 238 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK--GADRI 329 H +R T + G +V + Y + AD+ Sbjct: 239 HVLRHTFCTRLVAENVPLPIISKLAGHLSVQTTMDFYVRVSRADKA 284 >gi|296284090|ref|ZP_06862088.1| phage integrase [Citromicrobium bathyomarinum JL354] Length = 299 Score = 97.0 bits (240), Expect = 3e-18, Method: Composition-based stats. Identities = 38/262 (14%), Positives = 81/262 (30%), Gaps = 22/262 (8%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP------SSAIQFLT 138 L+ ++ ++ ++++ ++ D++ + + SA + L+ Sbjct: 13 RRLSPHTVRAYIRAAERLLEETPATDWQGVARLGAPALRAQLARRRADGLSNRSAARELS 72 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-------GSQ 191 ++R +A + + P+ K RP T ++ E G + Sbjct: 73 ALRAFLAFARAEAGFDDAQAPRLRGPRIKRTLPRPVTPDEALHLAERIGEERREEWTGLR 132 Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIG 251 R L +G+R ++ +H Q T K G + +A Sbjct: 133 DRAVLLLLYGAGMRLGEALSLTGEHAQIGETIRVTGKGGKTRVAPILPAIRSAIAAYVAA 192 Query: 252 KET-------FFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGA 302 F ++ + G+ N + H +R AT AGA Sbjct: 193 CPHDLAPDKPLFRGQRGGPLSPGLVQKAMAQVRGEIGLPANATPHALRHSFATHLLGAGA 252 Query: 303 TAHELMATYGWKTVDQAETYTK 324 L G ++ + YT+ Sbjct: 253 DLRSLQELLGHASLGSTQIYTE 274 >gi|268316885|ref|YP_003290604.1| integrase family protein [Rhodothermus marinus DSM 4252] gi|262334419|gb|ACY48216.1| integrase family protein [Rhodothermus marinus DSM 4252] Length = 309 Score = 97.0 bits (240), Expect = 3e-18, Method: Composition-based stats. Identities = 47/270 (17%), Positives = 103/270 (38%), Gaps = 30/270 (11%) Query: 88 AVNSRISFESYFDQ---IIRKSGDFDYRKITT---KHIRSGVESRKHTPSSAI---QFLT 138 + N+R ++ + ++ + + G ++ H+ +E K + + + ++ Sbjct: 28 SENTRRAYRNDLEEFFGLFFEDGRLSLENVSKVTFAHVNLYIEHLKRSGCAENTLRRKIS 87 Query: 139 SMRVLFKWAVRQEYVAINPCLS--VERPKRKTEGI-RPWTKED----MQQFKSFWSEGSQ 191 S+ FKWA E V +P + V+ P+ E ++E+ ++ ++ G + Sbjct: 88 SVSSFFKWAEAVELVDRSPVVRLLVQLPRASKERHIVTLSREEARQMLEAARAHPRTGIR 147 Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQN----NIFSIKTQKTGTIITVELPDGFMKLLAM 247 LLY LR S++ +H++ + + K GT V++P M L Sbjct: 148 DEALVRVLLYCWLRRSEAAAMNFEHIRKIGAHYVLRLPRTKKGTEEIVKIPPHCMTSLER 207 Query: 248 TPIGK--------ETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATIS 297 +F N+ ++++A A + G+++ AH +R T++ Sbjct: 208 LAAFYGEARGPVWRSFSNNSRGRRLSAQSIYNIVARLAREIGLDRRIGAHTLRHTGITLA 267 Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGAD 327 GA H++ + Y D Sbjct: 268 VQGGAPLHKVRTQARHADIQTTMVYVHQQD 297 >gi|85372971|ref|YP_457033.1| site-specific recombinase, phage integrase family protein [Erythrobacter litoralis HTCC2594] gi|84786054|gb|ABC62236.1| site-specific recombinase, phage integrase family protein [Erythrobacter litoralis HTCC2594] Length = 389 Score = 97.0 bits (240), Expect = 3e-18, Method: Composition-based stats. Identities = 56/343 (16%), Positives = 111/343 (32%), Gaps = 26/343 (7%) Query: 9 PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIP-------AYMSALTGSTPKREYI 61 P + G+ Y ++ G + RL ++ + A L + Sbjct: 34 PGFGERIHPSGRKSYVLQRTMGGKQRLITIGDAAILTERIAKDVARRLILRIELGQNPAD 93 Query: 62 NSPRKKPT-TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHI 119 R K T T + Y + A + ++ + Y + +I+ Sbjct: 94 RKQRGKKTPTYAAFLRHYWEVAA-PAWKPSTLEIHDIYRRTHLEHAFAGKFIDEISHADA 152 Query: 120 RSG--VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVA--INPCLSVERPKRKTEGIRPWT 175 + +R P +A + + ++ +F A Y+ NP V+R K + R + Sbjct: 153 VRWHAMLTRTAGPGAANRAMEILKAMFGKAEAWGYLPEHSNPFRGVKRNK-GRKIERFLS 211 Query: 176 KEDMQQFKSFWSEGSQPR----LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231 + +M + S+ + L +G R + +Q + KTG Sbjct: 212 QAEMARLGEALSQHRADKPNEVAVISLLALTGCRRGEILNLTWGEVQGRKLKLTDTKTGP 271 Query: 232 IITVELPDGFMKLLAMTPI--GKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHG 288 + + L ++ P G E F + F + +AG+ + H Sbjct: 272 RV-IWLGKEARAVIDRLPRRRGHERVFQFDVLPVSAIDWFWRMLR---VEAGIEDLRLHD 327 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 +R A+++A + T + G + V Y DR L Sbjct: 328 LRHNYASLAARSAETLPMIGELLGHRDVGTTARYAHFDDRSSL 370 >gi|255690817|ref|ZP_05414492.1| tyrosine type site-specific recombinase [Bacteroides finegoldii DSM 17565] gi|260623621|gb|EEX46492.1| tyrosine type site-specific recombinase [Bacteroides finegoldii DSM 17565] Length = 385 Score = 97.0 bits (240), Expect = 3e-18, Method: Composition-based stats. Identities = 60/307 (19%), Positives = 114/307 (37%), Gaps = 47/307 (15%) Query: 71 LKWLISEY----RKSAHWGSLAVNSRISFESYFDQII-----RKSGDFDYRKITTKHIRS 121 +++Y R+S + + ++ ++ S + I R+ + KI K I Sbjct: 86 FADWLNDYIEGIRRSPSY---SQSTYHNYRSTVNIIKAYLQYRRRPRYLMSKIDKKFIAG 142 Query: 122 GVESRKHT------PSSAIQFLT--------SMRVLFKWAVRQEYVAINPCLSV---ERP 164 ++ ++T P + + + + AV + + NP ++ ER Sbjct: 143 LLDFMQNTYRNTKSPDNPKEMSQCTLHLHQAILVRMLNAAVNEGIMNSNPFYALGKHERI 202 Query: 165 KRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ----NN 220 ++ TK+++ + R AF F ++GLR SD C + ++ Sbjct: 203 AKQQAERDYLTKDELLALAEAPTTNETTRRAFLFCCFTGLRYSDVCTLAWRDIKQVDSGL 262 Query: 221 IFSIKT-QKTGTIITVELPDGFMKLLA---MTPIGKETFFINNDKQKMNATQFSIWFKAK 276 + SI+ +KTG +T+ L +K L G+ F + + + K Sbjct: 263 VVSIRAMRKTGKQVTIPLNQSALKWLPDRNGCKPGQRVFDMT------SLSACDRCLKKS 316 Query: 277 ATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIK 334 A AG+ K S H R AT+S AG + + G + + Y + I+ Sbjct: 317 AVAAGIEKNVSYHTSRHTFATLSLAAGGDLYTVGKLLGHTNILSTQVYADVVMETK--IE 374 Query: 335 NSRRISS 341 RIS Sbjct: 375 AVNRISE 381 >gi|260174266|ref|ZP_05760678.1| tyrosine type site-specific recombinase [Bacteroides sp. D2] gi|315922537|ref|ZP_07918777.1| tyrosine type site-specific recombinase [Bacteroides sp. D2] gi|313696412|gb|EFS33247.1| tyrosine type site-specific recombinase [Bacteroides sp. D2] Length = 406 Score = 97.0 bits (240), Expect = 4e-18, Method: Composition-based stats. Identities = 46/275 (16%), Positives = 99/275 (36%), Gaps = 26/275 (9%) Query: 90 NSRISFE---SYFDQIIRK---SGDFDYRKITTKHIRSGVESRKH----TPSSAIQFLTS 139 + +E Y ++ I+K D + I K +SAI L + Sbjct: 132 KTVQRYETTTRYLEEFIKKEYQLSDIALNNLEANFISKFDAFLKIEKGCAQNSAITRLKN 191 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQPRLAF 196 ++ + + A+ +++ +P + R K + T ++++ + Q R F Sbjct: 192 LKKIIRIALENDWIKKDP-FAYYRFKLEETDPEFLTMDEIKIILAKEFTIKRVEQVRDVF 250 Query: 197 EFLLYSGLRCSDSCRAGVQH-LQNN----IFSIKTQKTGTIITVELPDGFMKLLAMTPIG 251 F +++GL SD +H +++N QKT + + + +L Sbjct: 251 VFCIFTGLAFSDVKDLSPEHLVKDNKGELWIRKNRQKTKIMCNIPVLPVAASILEKYKNV 310 Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS-ADAGATAHELM 308 E ++ + + + K A G++K S H R AT G + + Sbjct: 311 AE--CTGKLLPVLSNQRMNSYLKEIADVCGIHKNLSTHTARHSYATSICLANGVSMENVA 368 Query: 309 ATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343 G + Y + D+ K+ ++++S + Sbjct: 369 KMLGHADTSITKHYARVLDQN--IFKDMQKVNSCL 401 >gi|218282511|ref|ZP_03488761.1| hypothetical protein EUBIFOR_01343 [Eubacterium biforme DSM 3989] gi|218216498|gb|EEC90036.1| hypothetical protein EUBIFOR_01343 [Eubacterium biforme DSM 3989] Length = 343 Score = 97.0 bits (240), Expect = 4e-18, Method: Composition-based stats. Identities = 36/279 (12%), Positives = 94/279 (33%), Gaps = 15/279 (5%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH----T 129 LI+++ + + + + + ++ + +TT +R + + + Sbjct: 68 LINKFIAAKEIEGCSERTTKYYYATLIKM-DSMITKNVTHLTTDDLRMYLTEYQKINNCS 126 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 +S ++ F W + Y+ +P + + K ++ E ++ + + Sbjct: 127 KASIDNIRRNLSSFFSWLEEENYILKSPMKRIHKIKTDKVIKETYSDETLELLRDNCN-N 185 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDG----FMKL 244 + + L +G+R + R + + N + K V Sbjct: 186 LRDLAIIDLLSSTGMRVGELVRLNINDIDFENRECVVFGKGNKERPVYFDARTKIHLRNY 245 Query: 245 LAMTPIGKETFFINNDKQK--MNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAG 301 + F++ D +N + I + K G+NK H R+ AT + D G Sbjct: 246 INSRNDDNVALFVSLDAPHDRLNISGVEIRLRQLGRKLGINKVHPHKFRRTVATKAIDKG 305 Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340 ++ + G +D Y ++ + + + ++ Sbjct: 306 MPIEQVQSLLGHSQIDTTMHYA-MVNQNNVKESHRKFVA 343 >gi|58580222|ref|YP_199238.1| phage integrase family site specific recombinase [Xanthomonas oryzae pv. oryzae KACC10331] gi|58424816|gb|AAW73853.1| site-specific recombinase, phage integrase family [Xanthomonas oryzae pv. oryzae KACC10331] Length = 400 Score = 97.0 bits (240), Expect = 4e-18, Method: Composition-based stats. Identities = 59/297 (19%), Positives = 105/297 (35%), Gaps = 34/297 (11%) Query: 60 YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119 YI + T++ + Y S + S S + +++ G + +T + I Sbjct: 86 YIQRAPSERMTIEDALKRYL-SEISPTKRPASADSDARHAKPLMQNLGKYSLAALTPELI 144 Query: 120 RSGVESR-------------KHTPSSAIQF---LTSMRVLFKWAVRQEY---VAINPCLS 160 + R P S L + LF A++ E+ + NP S Sbjct: 145 AKYRDDRLAGLDRKDAKGKPAPKPRSPNTVRLDLALLGHLFNVAIK-EWGIGLTYNPVQS 203 Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQ 218 + RP R T+E+ + + S P L L +G+R S+ + Sbjct: 204 IRRPAPSPGRDRRLTREEETRLMAAVDAHSNPMLGWIVRIALETGMRSSEITGLRRNQVD 263 Query: 219 NNIFSIKTQKTGTII--TVELPDGFMKLLAMT------PIGKETFFINNDKQ--KMNATQ 268 + ++ Q+T + TV L +L PI F + K A Q Sbjct: 264 LDRRVVRLQETKNTMSRTVPLTVEATRLFREALNNPVRPIDTNLIFFGEPGRDNKRRAYQ 323 Query: 269 FSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 F+ + AGV + H +R + + +AG + E+ A G K++ + YT Sbjct: 324 FNPIWTRIKKDAGVPDFRFHDLRHEAVSRFVEAGLSDQEVAAISGHKSMQMLKRYTH 380 >gi|317057341|ref|YP_004105808.1| integrase family protein [Ruminococcus albus 7] gi|315449610|gb|ADU23174.1| integrase family protein [Ruminococcus albus 7] Length = 372 Score = 97.0 bits (240), Expect = 4e-18, Method: Composition-based stats. Identities = 57/323 (17%), Positives = 105/323 (32%), Gaps = 55/323 (17%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130 + +I + + + D++I G KIT + I+ + S P Sbjct: 44 FQKVIEMWATEYAELNHRSTTLQREHLIADRVIPALGHLRIDKITARDIQKFINSLA-KP 102 Query: 131 SSAIQ------------FLTSMRVLFKWAVRQEYVAINPCLSVERPKR-------KTEGI 171 + + L+ + +F++A+R + V NPC V PK K Sbjct: 103 GANKRNGKPLSQKTMRHHLSFISSIFEYAIRLDMVNTNPCSKVMIPKIDASGKAYKKPEK 162 Query: 172 RPWTKEDMQQFKSFWSEGSQP-RLAFEFLLYSGLRCSDSCRAGVQHLQ------------ 218 +TKE ++F E ++ F +Y+G R + +++ Sbjct: 163 HIYTKEQAREFMKILREAPMKYKVFFTLAIYTGCRRGELLGIEWKNIDFERGTVKIDHTS 222 Query: 219 ----NNIFSIKTQKT-GTIITVELPDGFMKLLAMTPIGKETF--------------FINN 259 + KT + V+LP + LL ++++ F Sbjct: 223 NYTADKGIYSDATKTERSTRMVDLPPAVIGLLKAYKHDQDSYKANLGDEWQEHDRLFTKW 282 Query: 260 DKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKT-VD 317 D Q M+ W + + H R F A++ +AG + A G T V Sbjct: 283 DGQPMHPNTPYTWLMRECERRNFPFYGLHSFRHFFASVEIEAGVDPTTVAAMLGHSTPVT 342 Query: 318 QAETYTKG-ADRIRLGIKNSRRI 339 TY+ A+ R + Sbjct: 343 TMSTYSHYFAESKRRASNIMAEV 365 >gi|239941212|ref|ZP_04693149.1| phage integrase family site specific recombinase [Streptomyces roseosporus NRRL 15998] gi|239941232|ref|ZP_04693169.1| phage integrase family site specific recombinase [Streptomyces roseosporus NRRL 15998] gi|239987688|ref|ZP_04708352.1| phage integrase family site specific recombinase [Streptomyces roseosporus NRRL 11379] Length = 324 Score = 97.0 bits (240), Expect = 4e-18, Method: Composition-based stats. Identities = 45/249 (18%), Positives = 86/249 (34%), Gaps = 26/249 (10%) Query: 109 FDYRKITTKHIRSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166 D I +H+ + + + R+ + S+A S++ +F W V +E + +P +++ P Sbjct: 66 ADLDDIHREHVEAYITATMRRTSASNAHNHFRSLKTMFNWLVDEEELDRSPMRTMKPPTL 125 Query: 167 KTEGIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSC--RAGVQHLQNN 220 + D+ + + + LL +G+R S+ R G L Sbjct: 126 PEVEVPVIPDADLSKLFKACKGTTYADRRDTALLMLLLDTGVRLSELTDRRVGDLDLDLK 185 Query: 221 IFSIKTQKTGTIITVELPDGFMKLLAM----------TPIGKETFFI----NNDKQKMNA 266 + + K G V + L P+ + ++ N Q++ Sbjct: 186 VLHV-LGKGGKTRPVPFGNTCATALDRYLRAAAKHKGKPLDDDEMWLWWGHRNKGQRLTI 244 Query: 267 TQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 K + +AG+ H R A G +LM GWK+ Y Sbjct: 245 WGVGTMLKRRCAQAGIGELHPHQFRHTFAHQWKVNGGNEDDLMRITGWKSRQMLSRYAAS 304 Query: 326 A--DRIRLG 332 A +R R+ Sbjct: 305 AGTERARMA 313 >gi|217978007|ref|YP_002362154.1| integrase family protein [Methylocella silvestris BL2] gi|217503383|gb|ACK50792.1| integrase family protein [Methylocella silvestris BL2] Length = 314 Score = 97.0 bits (240), Expect = 4e-18, Method: Composition-based stats. Identities = 43/278 (15%), Positives = 86/278 (30%), Gaps = 37/278 (13%) Query: 92 RISFESYFDQIIRKSGDFDYRK--------ITTKHIRSGVESRKHTPSSAIQFLTSMRVL 143 + + E+Y + +G K + +E R P+S+ + L+++R L Sbjct: 26 KNTLEAYARDLADYAGRLKAAKKSPIEATGDDIGAYIASLEKRGLKPASSARKLSAIRQL 85 Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA-------- 195 ++ V + Y + +P +E P+R + + ++ + + EG Sbjct: 86 HRFLVAESYRSDDPAAIIEGPRRGRGLPKTLSIAEVDRLLAVSKEGLDAAARSPGEQLRA 145 Query: 196 ------FEFLLYSGLRCSDSCRAGVQ-----------HLQNNIFSIKTQKTGTIITVELP 238 E L +GLR S+ + + T + Sbjct: 146 LRTACLIELLYATGLRVSELVSLPKSIARGKDPLIPIRGKGGRDRLAPISTKAREAIAAY 205 Query: 239 DGFMKLLAMTPIGKETFF-INNDKQKMNATQFSIWFK---AKATKAGVNKSAHGVRKFSA 294 + LA F +++ + F+ K A A + S H +R A Sbjct: 206 RALLDRLAPGAASGPWLFPADSESGHLTRQAFARDLKTAAAAAGLSAARVSPHVLRHAFA 265 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 + GA + G + + YT D Sbjct: 266 SHLLQNGADLRVVQELLGHADISTTQIYTHVLDERMKA 303 >gi|126434804|ref|YP_001070495.1| phage integrase family protein [Mycobacterium sp. JLS] gi|126234604|gb|ABN98004.1| phage integrase family protein [Mycobacterium sp. JLS] Length = 388 Score = 97.0 bits (240), Expect = 4e-18, Method: Composition-based stats. Identities = 65/371 (17%), Positives = 112/371 (30%), Gaps = 51/371 (13%) Query: 19 GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT-----TLKW 73 G F GRR + P + +L + R+ P T T + Sbjct: 17 GHYRARFTGPDGRRYKAPTTFLTKGDARAWLSLQQADIIRKAWTPPEATRTVDRKLTFRD 76 Query: 74 L--ISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESR-KHT 129 + Y + +L + +R + + I G IT +R+ K T Sbjct: 77 YATVWLYNRRVKGEALKMRTREHYAWLLAEHIYPTFGAMPVGSITADDVRAWHNRMGKAT 136 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPC-LSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 P++ + + AV A++PC + R+ + IRP T +++ + Sbjct: 137 PTARSHAYGLLNAIMNTAVADGKAALSPCVIRGAGTSRRVKKIRPATLAELEALTNAMPA 196 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ------------------------------ 218 Q + LR + + ++ Sbjct: 197 PYQA--MILLASWCALRFGELTELRRKDVELSTSVERDDQGQEVTVHEGLIHVERAVVRA 254 Query: 219 NNIFSIKTQKTGTII-TVELPDGFMKLLAM------TPIGKETFFINNDKQKMNATQFSI 271 + + + T K+ V +P + ++ G F + Sbjct: 255 GDGYEVTTPKSDAGTRDVAIPPHLVPVIEAHLADHVGIWGDALLFPAKHGGHLAPATLYR 314 Query: 272 WFKAKATKAG-VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD-RI 329 F T AG + H +R A ++A GAT ELMA G T A Y A R Sbjct: 315 RFYTARTAAGRPDLRFHDLRHSGAVLAAQTGATLAELMARLGHSTPQAAMRYQHAAQGRD 374 Query: 330 RLGIKNSRRIS 340 R RI+ Sbjct: 375 RQIAAALSRIA 385 >gi|254773716|ref|ZP_05215232.1| prophage integrase [Mycobacterium avium subsp. avium ATCC 25291] Length = 384 Score = 97.0 bits (240), Expect = 4e-18, Method: Composition-based stats. Identities = 59/354 (16%), Positives = 117/354 (33%), Gaps = 48/354 (13%) Query: 8 PPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFI-------------PAYMSALTGS 54 P + K G+ Y R + P + A+ S Sbjct: 6 PRGIRKRLNAAGEPRYQVR------YLIRDPAAPSGWVETSATFPTLREAKAFKSERDNE 59 Query: 55 TPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRK 113 PR T L+ + ++ S +++ + + +++ +I + G + Sbjct: 60 AALGARRFDPRLGRTPLQRIWVQFSDSKK-PAVSPKTWSGYTQHWELRIKPRFGHVPVDE 118 Query: 114 ITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR-KTEGIR 172 I+ +++ V+ P + + L +R + A + + NP L V + + E R Sbjct: 119 ISRGDVQAFVDDLTVGPWAKVSTLRLLRSILDVAHQDGRIHRNPALGVSAGRIPERERHR 178 Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-------------- 218 T +++Q + + L Y+GLR S+ V+ + Sbjct: 179 YLTAQEVQTLATACGD---QGDVVTILAYTGLRWSELVGLRVKDIDLVARRLYVRRAAPE 235 Query: 219 -NNIFSIKTQKTGTII-TVELPDGFMKLLAMTPIGKET--FFINNDKQKMNAT----QFS 270 I KT I TV LP + + G+ + + M + + + Sbjct: 236 VEGRIVIGPPKTRAGIRTVPLPQVVVDIFKTRISGRAPDEPAVTSPNGAMLRSNNWRRHT 295 Query: 271 IWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYT 323 W KA + H +R A+++ +GA + T G T A Y+ Sbjct: 296 HWNKALKKTNLAPLTIHDLRHTYASLARKSGADLRYVQKTMGHSTPTVTANIYS 349 >gi|326335381|ref|ZP_08201569.1| mobilizable transposon [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325692446|gb|EGD34397.1| mobilizable transposon [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 410 Score = 97.0 bits (240), Expect = 4e-18, Method: Composition-based stats. Identities = 40/274 (14%), Positives = 89/274 (32%), Gaps = 22/274 (8%) Query: 85 GSLAVNSRISFESYFDQI-IRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQ-------- 135 + + RI+++ + + + G + +I K P + Sbjct: 140 KNSSDAIRINWKRVIELLKLFSGGRVKFAQIDMKFSEDFKNFLLSAPCGGNKKGTISVNT 199 Query: 136 ---FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192 + + + + K A Y + ++ + ++E++ + Sbjct: 200 SATYFSIFKAILKQAFIDGYFLSDLSGKIKGIADRESRREYLSEEELNILAKTPCDNDIL 259 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQKTGTIITVELPDGFMKLLAMT 248 R A F +GLR SD R + + + +KT + + ++L Sbjct: 260 RRASLFSALTGLRLSDIQRLKWKEIIEDNDKIELHFTQKKTKGVEYKPISKQALELCGER 319 Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHE 306 ++ F N + W TKAG++K + H R AT+ G + Sbjct: 320 RDLEDLVFENLPDPAWISRPLKKWI----TKAGIHKNITFHCFRHTFATLQLANGTDIYT 375 Query: 307 LMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340 + G V + Y K D+ ++ +++ Sbjct: 376 VSKMLGHTNVKTTQAYAKVIDKNKIKAAEVIKLN 409 >gi|307704159|ref|ZP_07641083.1| phage integrase family protein [Streptococcus mitis SK597] gi|307622265|gb|EFO01278.1| phage integrase family protein [Streptococcus mitis SK597] Length = 384 Score = 97.0 bits (240), Expect = 4e-18, Method: Composition-based stats. Identities = 61/366 (16%), Positives = 116/366 (31%), Gaps = 57/366 (15%) Query: 11 VTKERTRHGKIIYYF-------RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS 63 + K +T+ G I+YY G +R Y + L Sbjct: 3 IHKYKTKKG-ILYYVSFYIGLDAYGKKKRHLKRGFKTKKEAKLYEARLEAGVVAPTVSTD 61 Query: 64 PRKKPTTLKWL----ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119 T K L + Y + + + ++ + + I GD +I+ Sbjct: 62 KPNPKVTYKELYQEWFNAYVGTVEETT-SSQTKNIYRIHILPI---FGDKFIDQISPLDC 117 Query: 120 RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK-RKTEGIRPWTKED 178 ++ + + T + Q + +F +A+ Y+ NP +V PK +KT W+ E+ Sbjct: 118 QNFITQKSQTFKNIKQIKSYTSKIFDFAINMNYIDRNPMKNVIMPKIKKTRSDNFWSLEE 177 Query: 179 MQQFKSFWS--EGSQPRLAFEFLLYSGLRCSDSCRAGVQH----------------LQNN 220 + F E + F L +SGLR + + Sbjct: 178 LHHFLDIVKETEPFKHFALFRLLAFSGLRKGELYALKWADINFDSNLLNIDKSLGRIDGK 237 Query: 221 IFSIKTQKTGTIITVELPDGFMKLLAMT-----------PIGK--------ETFFINNDK 261 T+ ++ T+ L D + ++ P+ K + +NDK Sbjct: 238 AIEKSTKNESSVRTIYLDDETIDIIKQWRNFYLKEQSQFPLTKLNISNEYMFYYISSNDK 297 Query: 262 -QKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319 + ++A + K + S HG R AT+ ++ G G + Sbjct: 298 IEPLHADYINNVLNRIIKKHKLKPISPHGFRHTHATLMSEIGIDPSNTSKRLGHASSQMT 357 Query: 320 -ETYTK 324 + YT Sbjct: 358 LDVYTH 363 >gi|15838156|ref|NP_298844.1| hypothetical protein XF1555 [Xylella fastidiosa 9a5c] gi|9106598|gb|AAF84364.1|AE003985_5 phage-related protein [Xylella fastidiosa 9a5c] Length = 284 Score = 97.0 bits (240), Expect = 4e-18, Method: Composition-based stats. Identities = 41/225 (18%), Positives = 78/225 (34%), Gaps = 15/225 (6%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESRK 127 T + + YR + A N++ Y + +++ D + I +IR ++ R Sbjct: 2 TFRHVAERYRAEVI-PTKAHNTQRMHHIYLNYLLQFFDDPPAPFESIKPVNIRQYLDWRP 60 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVA-INPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 SA + + L+ WA + NPC + R K + + +D + Sbjct: 61 FKV-SANREVALFSHLWNWARSKGVTDLPNPCGGIRRNKERGRDVYI---DDTTYRAVYH 116 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246 + R A + +G R SD +H+ N I KTG + + + L+ Sbjct: 117 AADQTLRDAMDLAYLTGQRVSDVVSMDERHIVNGALEICQAKTGVKLAIAITGELAVLIK 176 Query: 247 MTPIGKE-------TFFINNDKQKMNATQFSIWFKAKATKAGVNK 284 K ++ +++ T F AG+ K Sbjct: 177 RIFDHKRGLKLRSTRLIVDAKGLELSRTGLRYRFDKARVAAGIAK 221 >gi|258653763|ref|YP_003202919.1| integrase [Nakamurella multipartita DSM 44233] gi|258556988|gb|ACV79930.1| integrase family protein [Nakamurella multipartita DSM 44233] Length = 638 Score = 97.0 bits (240), Expect = 4e-18, Method: Composition-based stats. Identities = 47/315 (14%), Positives = 98/315 (31%), Gaps = 52/315 (16%) Query: 64 PRKKPTTLKWLISEYRK---SAHW--GSLAVNSRISFESYFDQIIRKSGDF-DYRKITTK 117 P P ++ ++ Y + A + +R + + + + + R++ Sbjct: 259 PEPCPPAIRAVVERYLRLRLEAKFDRPQTVRLTREGLRRLVNWLAKVHPEITNLRQLDRS 318 Query: 118 HIRSGVE-------SRKHTPSSAIQFLTSMRVLFKWAVR---QEYVAINPCLSV----ER 163 I ++ + P + +++ + + + + P + + Sbjct: 319 LIEDYLQWLPGCLSQQTGQPLTPSTVASAISAVGAFCRDTAVWGWTDV-PGRPLVTTRDT 377 Query: 164 PKRKTEGIRPWTKEDMQQFKSFWSEGSQP--RLAFEFLLYSGLRCSDSCRAGVQHLQNN- 220 PK+ R +++ + + P R A L +SG R + R L ++ Sbjct: 378 PKQPKPLPRFLPADELAAIMTAIDALADPAQRAALLLLRWSGARRDEIRRLTWDCLDHDL 437 Query: 221 ----IFSIKTQKTGTIITVELPDGFMKLLAMTPIGK-----------------ETFFINN 259 I K+ T V L L F+ + Sbjct: 438 HGNPRLRIPVGKSYTERIVPLHPDAAAALRGAITAAKAQNAIARHDQHASRAVNYVFMRH 497 Query: 260 DKQKMNATQFSIWFKAKATKAGV-------NKSAHGVRKFSATISADAGATAHELMATYG 312 K T F F+ AG+ SAH R T A+ GA +MA G Sbjct: 498 GKLLSKTTLFDDAFRTVCGAAGLLDAHGVPKVSAHRFRHTLGTQLAEGGARIQTIMAILG 557 Query: 313 WKTVDQAETYTKGAD 327 ++ + + Y++ +D Sbjct: 558 HRSAEMSLVYSRISD 572 >gi|34762210|ref|ZP_00143217.1| DNA integration/recombination/invertion protein [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27888171|gb|EAA25230.1| DNA integration/recombination/invertion protein [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 348 Score = 97.0 bits (240), Expect = 4e-18, Method: Composition-based stats. Identities = 48/283 (16%), Positives = 102/283 (36%), Gaps = 32/283 (11%) Query: 67 KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG---- 122 T L ++ + +L+ S + +++ + + + K+TT IR Sbjct: 55 SDRTNAELWKKFFLTKKAENLSDKSLLYYKNSLE-LFSLFVKKSFLKVTTDDIRLYLAVE 113 Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 E + S + F + +EY++ NP +++ K + +T+ ++++ Sbjct: 114 REKNQQKAVSIDNIRRILNSFFSFLNEEEYISNNPVKRIKKVKGQKTEKTAFTQLELEKL 173 Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242 + E S + E L+ S +R ++ ++ + IK + G + FM Sbjct: 174 RMAC-ENSLEKAIMEVLISSAIRATELANIKIRDIDFEKNEIKIVRKGNKEGI----AFM 228 Query: 243 KLLAMTPIGK----------ETFFINND-----------KQKMNATQFSIWFKAKATKAG 281 +A I K ++ + K+ F K+ AT+A Sbjct: 229 STIAALAIKKYISERGNYNTPYLWVVDGLMYKCYKNQILGSKIETEGFRRVLKSIATRAK 288 Query: 282 V-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 V N H R+ AT++ G E+ G + ++ Y Sbjct: 289 VENVHPHRFRRTFATMALKKGMDVEEIQQVLGHQNINTTMIYV 331 >gi|325690779|gb|EGD32780.1| phage integrase family integrase/recombinase [Streptococcus sanguinis SK115] Length = 328 Score = 97.0 bits (240), Expect = 4e-18, Method: Composition-based stats. Identities = 37/279 (13%), Positives = 88/279 (31%), Gaps = 15/279 (5%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE----SRKHT 129 L+ + + + S + + + + R ITT +R+ + RK + Sbjct: 53 LLELFISAKRIEGCSEKSLKYYRMVIENMFTSL-NLTVRDITTSDLRTYLAHYQRERKSS 111 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 + F W ++++ +P + + K ++ E ++ + E Sbjct: 112 KVTIDNMRRIFSSFFSWLEDEDFILKSPVRRIRKIKTDKTIKETFSDEGLELLRDACDE- 170 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG-----FMKL 244 + + L +G+R + R + + G + D + Sbjct: 171 IRDLAMIDLLASTGMRVGELVRLNREDINFYERECLVFGKGNSERIVYFDARTKIHLINY 230 Query: 245 LAMTPIGKETFF--INNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAG 301 L F +++ ++ + KA +NK H R+ AT + D G Sbjct: 231 LDSRQDDNPALFVSLSSPHDRLLIGGVETRLRQLGEKADLNKVHPHKFRRTLATRAIDKG 290 Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340 ++ G +D Y ++ + + + I Sbjct: 291 MPIEQVQHLLGHVKIDTTMHYA-MVNQANVKNSHRKYIG 328 >gi|294777960|ref|ZP_06743395.1| site-specific recombinase, phage integrase family [Bacteroides vulgatus PC510] gi|294448169|gb|EFG16734.1| site-specific recombinase, phage integrase family [Bacteroides vulgatus PC510] Length = 354 Score = 97.0 bits (240), Expect = 4e-18, Method: Composition-based stats. Identities = 43/290 (14%), Positives = 93/290 (32%), Gaps = 35/290 (12%) Query: 76 SEYRKSAHWGSLAVNSRISFESYFDQIIRK--------SGDFDYRKITTK---------- 117 Y+ + R + + G + +I Sbjct: 70 DRYKLKGDFLEY---YRQQLRKHDQKWEFVYLHFKNFVHGKCTFEEIDIDLCNKFREYLL 126 Query: 118 HIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177 + + + T +SA + ++ R K R + N +E+ + + + E Sbjct: 127 SAKKLRRNGRITRNSASGYWSTFRGFLKILYRNGLIKTNVNDFLEKIETEDTMKEALSVE 186 Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL-----QNNIFSIKTQKTGTI 232 ++ Q + ++A F + LR SD + + I TQK Sbjct: 187 ELYQLAETPCKKPIVKIASLFSCMTSLRISDILALRWEDIVDYSAGGKCVHIITQKNKAE 246 Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290 + + + + L+ + K F + + + + K AG+ K + H R Sbjct: 247 DIIPISEEALGLIGYSSDKKGLVF-----KGLMRSWTQMPMKEWIRSAGITKNITFHSYR 301 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340 + AT+ AG + + K++ Y K D + + S++I+ Sbjct: 302 RTFATLQGAAGTDIRTIQSIMAHKSITTTMRYMKVVDSNKR--EASKKIT 349 >gi|292557929|gb|ADE30930.1| putative transposon integrase, Tn916 ORF3-like protein [Streptococcus suis GZ1] Length = 432 Score = 97.0 bits (240), Expect = 4e-18, Method: Composition-based stats. Identities = 59/392 (15%), Positives = 109/392 (27%), Gaps = 88/392 (22%) Query: 15 RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPA-------YMSALTGSTPKREYINSPRKK 67 R K R G +R + ++ A Y L K E I + Sbjct: 19 TKRKDKSRVVLRTGESQR--ADGTYHFSWTDANHKRRYVYAKTLDELRYKEEQIAKDKSD 76 Query: 68 PTTLKWLISEYRKSAH----WGSLAV----NSRISFESYFD-QIIRKSGDFDYRKITTKH 118 ++ Y W L N+ +++ ++ + + G + Sbjct: 77 GIKVEA---RYTTVNDIYELWKDLKRGLKNNTFENYKYMYETFVRHQIGSKTVSSLRKTD 133 Query: 119 IRSGV----ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV-ERPKR----KTE 169 I+ + R P++ T + + AV +Y+ NP +V + K+ +TE Sbjct: 134 IKRFYNYLADERHLKPATIDNIHTVLHQILDMAVDDDYIRNNPSNNVLKELKQSHCFQTE 193 Query: 170 GIRPWTKEDMQQFKSFWSEGSQPRLA---FEFLLYSGLRCSDSCRAGVQHLQNNI----- 221 R TK + + F + + F ++ +GLR + + Sbjct: 194 KRRALTKPEQELFLDYLKNSPTSKYWYPVFAVMIGTGLRVGEVTGLRWCDIDLEEGIIDV 253 Query: 222 -------------------FSIKTQKTGT-IITVELP-------------DGFMKLLAMT 248 F++ T KT V + + L Sbjct: 254 NHTLVYYDHRTEGSKRGCYFNVNTTKTPAGRRKVPMLGFVKEAFLMEKERQELLDLHCEA 313 Query: 249 PIGKET--FFINNDKQKMNATQFSIWFKAKATKAG--------------VNKSAHGVRKF 292 + T FIN Q + + + + S H +R Sbjct: 314 TVDGYTDFIFINRFGQPQHQATLNKAIRRIIRDCNDEQLLKDENAEVLLPHFSCHSLRHT 373 Query: 293 SATISADAGATAHELMATYGWKTVDQA-ETYT 323 T +AG + T G K + YT Sbjct: 374 FTTRMCEAGVNVKVIQDTLGHKDISTTLNIYT 405 >gi|260494457|ref|ZP_05814587.1| integrase/recombinase [Fusobacterium sp. 3_1_33] gi|260197619|gb|EEW95136.1| integrase/recombinase [Fusobacterium sp. 3_1_33] Length = 328 Score = 97.0 bits (240), Expect = 4e-18, Method: Composition-based stats. Identities = 42/295 (14%), Positives = 96/295 (32%), Gaps = 44/295 (14%) Query: 88 AVNSRISFESYFDQIIR--KSGDFDY---------RKITTKHIRSGV----ESRKHTPSS 132 + + + + + G+ D+ + I + + + + E RK +S Sbjct: 33 SEKTVKDYMFHLKDFLHFVYDGENDFSISEVIPLMQDIEKEDVEAYIVHLFEDRKLKKTS 92 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW--TKEDMQQFKSFWSEGS 190 L++++ L+K NP ++ K + +D+++ + S Sbjct: 93 VNTILSALKSLYKELETNGL--KNPVKYIKLFKVNRNIENILKVSIDDIRKIIGLYKIDS 150 Query: 191 QPR----LAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVELPDGFM 242 + + L Y+G+R + +H F + K+G + + + Sbjct: 151 EKKYRNITILYTLFYTGMRSKELLTLQFKHYLKRENEYFFKLIETKSGKDVYKPIHKSLV 210 Query: 243 K-------------LLAMTPIGKETFFINN--DKQKMNATQFSIWFKAKATKAGVNKSAH 287 K L + + ++ F + D ++ + + G + S H Sbjct: 211 KKLEEYKEYLMSMYSLDLKDLEEKYIFSTSVLDNSPLSYRSLNAIIQDMGKLIGKDISPH 270 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342 +R AT + +GA E+ G E Y R L K ++ + Sbjct: 271 NIRHAIATELSLSGADILEIRDFLGHSDTKVTEVYINA--RSILEKKVLEKLPEI 323 >gi|319406320|emb|CBI79957.1| integrase/recombinase XerC [Bartonella sp. AR 15-3] Length = 321 Score = 97.0 bits (240), Expect = 4e-18, Method: Composition-based stats. Identities = 36/261 (13%), Positives = 75/261 (28%), Gaps = 25/261 (9%) Query: 89 VNSRISFESYFDQIIRKSGDFD----YRKITTKHIRSGVESRK---HTPSSAIQFLTSMR 141 V + + + G + +R+ + R+ S + + S+R Sbjct: 44 VAYERDTRQFLFFLCKHLGYQPTLNDLADLRVADLRAYLAYRRTQNINARSLSRNMASLR 103 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE-------DMQQFKSFWSEGSQPRL 194 F + R++ V + V PK + T E + Q ++ ++ Sbjct: 104 SFFNYLSREQLVNVPAAKLVRTPKYPKSLPKSLTIESALRIVREDNQQETEPWIIARNTA 163 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSI--KTQKTGTIITVELPD----GFMKLLAMT 248 L G+R S++ + + T K G + L L Sbjct: 164 ILILLYGCGMRISEALALTPEKFSDPNIKSLPITGKGGKTRLIPLIPIAHTAIKNYLKCC 223 Query: 249 P---IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGAT 303 P + + F + + + G+ ++ H +R AT G Sbjct: 224 PYPLVNNQPIFRGVRGKPLQPAIIQRTVQNLRAHLGLPETTTPHALRHSFATHLLSRGGD 283 Query: 304 AHELMATYGWKTVDQAETYTK 324 + G + + YT Sbjct: 284 LRTIQELLGHACLSTTQIYTH 304 >gi|301057714|ref|ZP_07198787.1| site-specific recombinase, phage integrase family [delta proteobacterium NaphS2] gi|300448175|gb|EFK11867.1| site-specific recombinase, phage integrase family [delta proteobacterium NaphS2] Length = 345 Score = 97.0 bits (240), Expect = 4e-18, Method: Composition-based stats. Identities = 52/289 (17%), Positives = 100/289 (34%), Gaps = 37/289 (12%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVES--R 126 TLK E+ + H + + ++ + K GD +I + ++ + + Sbjct: 31 TLKRYAEEWFQLPH--KMNRFTLERYKGTMVRHVYPKLGDHQIDQIKRRDLKVFFDRLLK 88 Query: 127 KHTPSSAIQFLTS-MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 K S+ Q + S + +F+ A+ E + +NP + KR++ I+P+T++ F Sbjct: 89 KGMKESSFQLIKSPLSKIFQHAIDDELIQVNPLSGISHSKRRSIDIKPFTEDQAFLFLEA 148 Query: 186 WSEGSQP--RLAFEFLLYSGLRCSDSCRAGVQHLQ---------NNIFSIKTQ---KTGT 231 + + F LL +G+R + + + +IF K G Sbjct: 149 AKDYRKGVYYPHFLTLLRTGVRIGELLGLQWKDIDFKSRELVLKRHIFQTTVMDATKNGQ 208 Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNAT--QFSIWFK------------AKA 277 I TV++ + L K+ + + K Sbjct: 209 IRTVDMTPHLSETLRALKKEKQ-INALKFGRPFSEWCFSLGNKVKPMSMPPIRKAMFEIL 267 Query: 278 TKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324 KAG+ K H R ATI G ++ G ++ + YT Sbjct: 268 EKAGLPKMRLHDFRHSYATIRLLKGHDIGDVSYQMGHSSIKVTFDIYTH 316 >gi|198277427|ref|ZP_03209958.1| hypothetical protein BACPLE_03641 [Bacteroides plebeius DSM 17135] gi|198269925|gb|EDY94195.1| hypothetical protein BACPLE_03641 [Bacteroides plebeius DSM 17135] Length = 293 Score = 97.0 bits (240), Expect = 4e-18, Method: Composition-based stats. Identities = 45/255 (17%), Positives = 93/255 (36%), Gaps = 23/255 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKS----GDFDYRKITTKHIRSGVESRKHTPSS---AIQFL 137 + + + +S+ D+ +F++ + +R V S + + L Sbjct: 14 RNYSEKTILSYGIDLDEFEAYFKSVDEEFEFTSVDADVVRGWVLSLMDEGRAETTVNRKL 73 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS-----EGSQP 192 +S+R + + +RQ+ VA++P V PK+K E M Q + EG + Sbjct: 74 SSLRSFYHYLLRQKLVAVDPVAKVVGPKKKKPLPVFVRDEAMNQLLDGFEFPQTFEGVRD 133 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLLAMTPIG 251 + E +G+R ++ + + + IK T K + D ++L+ Sbjct: 134 KAMLEVFYSTGMRRAELITLRDEDVDFSALVIKVTGKRNKQRLIPFGDRLQEVLSAYLQE 193 Query: 252 K--------ETFFINNDKQKMNATQFSIWFKAK--ATKAGVNKSAHGVRKFSATISADAG 301 + E FFI +++ + + K KS H +R AT + Sbjct: 194 RARFYSGECEAFFIRKSGVRLSPSSVNYIVKRYLSKVVTLKKKSPHVLRHTFATSMLNHQ 253 Query: 302 ATAHELMATYGWKTV 316 A + G +++ Sbjct: 254 AELEAVKELLGHESL 268 >gi|254452044|ref|ZP_05065481.1| putative phage-related integrase [Octadecabacter antarcticus 238] gi|198266450|gb|EDY90720.1| putative phage-related integrase [Octadecabacter antarcticus 238] Length = 385 Score = 97.0 bits (240), Expect = 4e-18, Method: Composition-based stats. Identities = 56/322 (17%), Positives = 120/322 (37%), Gaps = 20/322 (6%) Query: 20 KIIYYFRKGHGRRIRLPYPHESTFI--PAYMSALTGSTPKREYINSPRKKPTTLKWLISE 77 K + R+ +GR +R + A + A + + ++K K ++ E Sbjct: 44 KSWFMMRRFNGRMLRTTFGRYPDLTLANARLKAPNVLADMSDGLTQGQRKTDLFKVVLDE 103 Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKHTPSSAIQ 135 + K + +V + + + G IT + + ++ +P +A + Sbjct: 104 WLKKDQAKNKSV--HQVRVAMYKHALPAFGPMPVASITKRDVNRLIDKIVDAGSPVAANR 161 Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-GSQPRL 194 L + F W ++ + ++P ++ P ++ R T E+++ F + + G Sbjct: 162 VLAFTKRFFSWCKERDILELSPAEAIRPPSKEKTRDRVLTLEEIKGFWAACDQMGYPWGP 221 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSI--KTQKTGTIITVELPDGFMKLLAMTPI 250 F+ LL +G R + +A + + ++ + K G ++L D + ++ P Sbjct: 222 IFQLLLLTGARLREVSQASWGEVSIADGTLNLPARRTKNGRAHQIQLSDQAINIIQALPK 281 Query: 251 --GKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADA-GATAHE 306 G++ F N ++ FS K +GV + H +R+ AT S + G + Sbjct: 282 VEGQDLIFTTNGTTAVS--GFSKVKKRLDIISGVADWRFHDLRRSFATHSTERLGISPVV 339 Query: 307 LMATYGWKTVD---QAETYTKG 325 T A Y G Sbjct: 340 ADKILNHVTGQVRGVAAIYQHG 361 >gi|121535734|ref|ZP_01667537.1| phage integrase family protein [Thermosinus carboxydivorans Nor1] gi|121305699|gb|EAX46638.1| phage integrase family protein [Thermosinus carboxydivorans Nor1] Length = 393 Score = 97.0 bits (240), Expect = 4e-18, Method: Composition-based stats. Identities = 42/305 (13%), Positives = 92/305 (30%), Gaps = 37/305 (12%) Query: 48 MSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKS 106 AL Y+++ + T+ ++++ ++A ++ +E +I Sbjct: 52 RDALAAQYEAAYYVDADKI---TVGDWLAKWLDVYARPAVAPSTYDWYERICRVHLIPAI 108 Query: 107 GDFDYRKITTKHIRSGVESRKHTPSSAIQFL---TSMRVLFKWAVRQEYVAINPCLSVER 163 G ++ ++ + S SA + + + + A + + P V Sbjct: 109 GHLRLSRLQQMAVQQLLNSLVDAGKSARTVQAVHSVLAMALRVARKHGLLRTLPTDDVAV 168 Query: 164 PKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS 223 P+ + + RP T ++ + A +GLR + + + Sbjct: 169 PQVRKQDKRPLTPDEWDALLTAAQTAPDIFAALVVEWATGLRRGELLGLMWDDIDFDRCL 228 Query: 224 IKTQKT----------------GTIITVELPDGFMKLLAMTPIGKE-------------- 253 I ++ T + +P M++L + Sbjct: 229 INVRRAVQIRRGGCVLADPKTEATKRVLPVPKEVMQVLRAHRARQMQCRLAAGPAWQDCG 288 Query: 254 TFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGW 313 F + + +S F A AG++ H +R + AGA E G Sbjct: 289 LVFPTSGGTLYDPRNWSKRFARIAKAAGLDIGVHHLRHDLTSRIVAAGAPVKEAQYRLGH 348 Query: 314 KTVDQ 318 TV Sbjct: 349 ATVKM 353 >gi|299141859|ref|ZP_07034994.1| mobilizable transposon protein, int protein [Prevotella oris C735] gi|298576710|gb|EFI48581.1| mobilizable transposon protein, int protein [Prevotella oris C735] Length = 418 Score = 97.0 bits (240), Expect = 4e-18, Method: Composition-based stats. Identities = 34/208 (16%), Positives = 70/208 (33%), Gaps = 10/208 (4%) Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 + ++A + + + K A Y+ I+ ++ + + T +++ + + E Sbjct: 199 SRNTASTYFSIFKAALKQAFIDGYLTIDLSAKIKGIQEQESRREYLTLDELNKLANTPCE 258 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI----FSIKTQKTGTIITVELPDGFMKL 244 + A F +GLR D + + +KT + + + + KL Sbjct: 259 RDVLKRAALFSALTGLRHCDIQKLKWNEIAIEGNQAKLLFTQKKTKGVEYMPISEQAFKL 318 Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302 ++ F + +A KAG+ K S H R AT+ G Sbjct: 319 CGEPRQPEQLVFEGLPNPSWISRSL----RAWIEKAGIQKHLSFHCFRHTFATLQLANGT 374 Query: 303 TAHELMATYGWKTVDQAETYTKGADRIR 330 + + G V + Y K D + Sbjct: 375 DIYTVSKMLGHTNVKTTQVYAKVVDEKK 402 >gi|120600872|ref|YP_965446.1| phage integrase family protein [Shewanella sp. W3-18-1] gi|120560965|gb|ABM26892.1| phage integrase family protein [Shewanella sp. W3-18-1] Length = 405 Score = 97.0 bits (240), Expect = 4e-18, Method: Composition-based stats. Identities = 42/253 (16%), Positives = 83/253 (32%), Gaps = 19/253 (7%) Query: 93 ISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQ 150 S+ + + + + K ++A + +R A R+ Sbjct: 125 RSYHGRAELTFEELDKKFLEGFRKYLLEEPLTKSKSKLAKNTASSYFNKVRAALNEAYRE 184 Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSC 210 + NP V+ K + T ++++ + AF F +GLR SD Sbjct: 185 GIIRDNPVQRVKSVKAENTQRTYLTLDEVRAMTRAECRYDVLKRAFLFSCTTGLRWSDIQ 244 Query: 211 RAGVQHLQN-----NIFSIKTQK----TGTIITVELPDGFMKLLAMTPIGKETFFINNDK 261 + + ++ K K +++ ++LPD +KL+ E F Sbjct: 245 KLTWKEIEEFQDGHYRIIFKQTKLLNAGNSLVYLDLPDSAVKLMGERQDKTERVF----- 299 Query: 262 QKMNATQFSI-WFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318 + + + ++ A AGV K + H R A + G + L G + Sbjct: 300 KGLKYSSYTNVALLHWAMLAGVQKHVTFHVGRHTFAVAQLNRGVDIYSLSRLLGHSELRT 359 Query: 319 AETYTKGADRIRL 331 E Y + R+ Sbjct: 360 TEIYADILESRRV 372 >gi|29350025|ref|NP_813528.1| integrase [Bacteroides thetaiotaomicron VPI-5482] gi|29341937|gb|AAO79722.1| integrase [Bacteroides thetaiotaomicron VPI-5482] Length = 420 Score = 97.0 bits (240), Expect = 4e-18, Method: Composition-based stats. Identities = 37/228 (16%), Positives = 80/228 (35%), Gaps = 10/228 (4%) Query: 110 DYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169 D + + G + + ++A + + ++ K A EY+ ++ V+ + Sbjct: 182 DIKMFLLRAPMGGNKKGTISQNTASTYFSILKAGLKQAFIDEYLTVDISAKVKGITNIEK 241 Query: 170 GIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSI- 224 T ++Q + + AF F + +GLR SD + + + ++ Sbjct: 242 PRVALTMNEVQMLVDTPCKDDVLKRAFLFSILTGLRHSDIQTLKWKQIQQTSKGTWQAVV 301 Query: 225 KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284 QKT + ++L + P E A+ S K +G+ K Sbjct: 302 IQQKTKRPDYKPVIQQALQLCGIRPDDDEALVFEGLTD---ASWISRPLKVWIEASGIKK 358 Query: 285 --SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 + H R A++ + G + + + G V + YT + + Sbjct: 359 HITFHCGRHSYASLLLENGVDIYTIKSLMGHTNVKTTQIYTHIVNEQK 406 >gi|108804749|ref|YP_644686.1| phage integrase [Rubrobacter xylanophilus DSM 9941] gi|108765992|gb|ABG04874.1| phage integrase [Rubrobacter xylanophilus DSM 9941] Length = 379 Score = 97.0 bits (240), Expect = 4e-18, Method: Composition-based stats. Identities = 42/295 (14%), Positives = 90/295 (30%), Gaps = 42/295 (14%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFE-SYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129 + + + + + G++ + +++ I G+ + +T H++ + Sbjct: 68 VGEYMDRWLRDSVEGNVGPRTLANYKLQVRRHIKPVLGEIQLKTLTPAHVQGLYRQKLDA 127 Query: 130 ---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 PSS + A+R V N +V+ PK +E + T E+ ++F Sbjct: 128 GLAPSSVRYIHAVLHRALTQALRWGLVPRNVSEAVDLPKLVSEEVDALTPEEARKFLD-A 186 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--------------------FSIKT 226 + G + + + +G+R + + Sbjct: 187 ARGDRFEALYVVAVMTGMRRGELLGLRWSDIDLGQNAPATLRVGRQLQRMRDGSGLKFVA 246 Query: 227 QKTGTIITVELPDGFMKLLAM--------------TPIGKETFFINNDKQKMNATQFSIW 272 K G T+ LP ++ L + F + + + Sbjct: 247 PKGGKGRTIRLPSRAVEALKAHRARQAEERLKAGPLYRDEGLVFASEVGTPLEPSNIDRR 306 Query: 273 -FKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTK 324 FK KAG+ + H +R AT+ G + G + TY+ Sbjct: 307 SFKPLLKKAGLPDIRFHDLRHTCATVLLSQGVNPKFVQELLGHADIKLTLGTYSH 361 >gi|153930697|ref|YP_001393320.1| shufflon-specific DNA recombinase [Yersinia pseudotuberculosis IP 31758] gi|152958238|gb|ABS45700.1| shufflon-specific DNA recombinase [Yersinia pseudotuberculosis IP 31758] Length = 375 Score = 97.0 bits (240), Expect = 4e-18, Method: Composition-based stats. Identities = 41/246 (16%), Positives = 86/246 (34%), Gaps = 16/246 (6%) Query: 88 AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQF-LTSMRVLFKW 146 VN+ + + D + + +++ + K S+ ++ L + LFK Sbjct: 34 RVNTIKKY-KLSTLLTNNITTVDIAEYRDERLKTVKPNGKTISSNTVRLELALLSHLFKV 92 Query: 147 AV-RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA--FEFLLYSG 203 + NP L V +PK R + ++ + E S A + + Sbjct: 93 GIVEWGIARENPVLLVRKPKASEGRNRRVQPAEHRRLIRYADEHSTGECASIINLAIETA 152 Query: 204 LRCSDSCRAGVQ--HLQNNIFSIKTQKTGTIITVELPDGFMKLLA-MTPIGKETFFINND 260 +R + + L+ + + K GT V L ++L +P + F Sbjct: 153 MRQGEILSLQWEYVDLRQGVAHLPETKNGTSRDVPLSAKAREILRKCSPKSSGSVF---- 208 Query: 261 KQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQ 318 + F ++ K+G+ + H +R + ++G E+ A G K++ Sbjct: 209 --SYTSNGFKSAWRCIIIKSGIKDLHFHDLRHEGVSRFVESGRLNIMEVAAISGHKSLSM 266 Query: 319 AETYTK 324 + YT Sbjct: 267 LKRYTH 272 >gi|307711353|ref|ZP_07647773.1| phage integrase family protein [Streptococcus mitis SK321] gi|307616869|gb|EFN96049.1| phage integrase family protein [Streptococcus mitis SK321] Length = 384 Score = 97.0 bits (240), Expect = 4e-18, Method: Composition-based stats. Identities = 61/366 (16%), Positives = 115/366 (31%), Gaps = 57/366 (15%) Query: 11 VTKERTRHGKIIYYF-------RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS 63 + K +T+ G I+YY G +R Y + L Sbjct: 3 IHKYKTKKG-ILYYVSFYIGLDAYGKKKRHLKRGFKTKKEAKLYEARLEAGVVAPTVNTD 61 Query: 64 PRKKPTTLKWL----ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119 T K L Y + + + ++ + + I GD +I+ Sbjct: 62 KPNPKVTYKELYQEWFKAYVGTVEETT-SSQTKNIYRIHILPI---FGDKFVDQISPLDC 117 Query: 120 RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK-RKTEGIRPWTKED 178 ++ + + T + Q + +F +A+ Y+ NP +V PK +KT W+ E+ Sbjct: 118 QNFITQKSQTFKNIKQIKSYTSKIFDFAINMNYIDRNPMKNVIMPKIKKTRSDNFWSLEE 177 Query: 179 MQQFKSFWS--EGSQPRLAFEFLLYSGLRCSDSCRAGVQH----------------LQNN 220 + F E + F L +SGLR + + Sbjct: 178 LHHFLDIVKETEPFKHFALFRLLAFSGLRKGELYALKWADINFDSNLLNIDKSLGRIDGK 237 Query: 221 IFSIKTQKTGTIITVELPDGFMKLLAMT-----------PIGK--------ETFFINNDK 261 T+ ++ T+ L D + ++ P+ K + +NDK Sbjct: 238 AIEKSTKNESSVRTIYLDDETIDIIKQWRNFYLKEQSQFPLTKLNISNEYMFYYISSNDK 297 Query: 262 -QKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319 + ++A + K + S HG R AT+ ++ G G + Sbjct: 298 IEPLHADYINNVLNRIIKKHKLKPISPHGFRHTHATLMSEIGIDPSNTSKRLGHASSQMT 357 Query: 320 -ETYTK 324 + YT Sbjct: 358 LDVYTH 363 >gi|238762306|ref|ZP_04623278.1| Phage integrase [Yersinia kristensenii ATCC 33638] gi|238699653|gb|EEP92398.1| Phage integrase [Yersinia kristensenii ATCC 33638] Length = 360 Score = 97.0 bits (240), Expect = 4e-18, Method: Composition-based stats. Identities = 48/278 (17%), Positives = 92/278 (33%), Gaps = 30/278 (10%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--K 127 T+ + Y LA N+ + + I K D KITT I +ES + Sbjct: 77 TMDNWLERYEIILQRRKLAANTYKVRAGHINTIRDKFADKVLSKITTLDIAEFLESWVEQ 136 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + A + + +F+ A+ + +NP PK R + +Q+ + + Sbjct: 137 GKAAMAGTLRSVLSDVFREAIVAGRIEVNPVTPTRAPKITVMRERL----EYEQYIAIRN 192 Query: 188 EGSQPRLAF----EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243 Q F + L +G R D + +++N I+ KTG +I + L Sbjct: 193 AAEQQPAWFALSMDLALVTGQRREDVVKMKFIDVRDNRLYIEQTKTGAMIAIPLTLTLKS 252 Query: 244 --------LLAMTPIGKETFFINNDKQKMN------ATQFSIWFKAKATKAGV-----NK 284 + + + F I++ +K + + F +G+ Sbjct: 253 VGLSLSNIIDRCRQVSRTDFLISSGIRKNSPDGSIHPDGLTKGFVKARRYSGLSFSHSPP 312 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 S H +R + + G K+ + Y Sbjct: 313 SFHEIR-SLSGRLYEKEYGKEFTRKLLGHKSEKMTDKY 349 >gi|323146135|gb|ADX32374.1| phage integrase [Cronobacter phage ESSI-2] Length = 338 Score = 97.0 bits (240), Expect = 4e-18, Method: Composition-based stats. Identities = 44/321 (13%), Positives = 88/321 (27%), Gaps = 44/321 (13%) Query: 29 HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLA 88 G+RIR + + + AY + + ++ + L LI+ W L Sbjct: 21 KGKRIRKKFVTKGEAL-AYEKFINAELEDKPWLGEKQDNRR-LSDLINL------WYDLY 72 Query: 89 VNSRISFESY---FDQIIRKSGDFDYRKITTKHIRSGVESR-------------KHTPSS 132 + I GD IT E R P + Sbjct: 73 GRTLSDSNRMMSKLKAICAGMGDPIASNITAADFSEYREGRLKGEIPDITGRCMPIQPQT 132 Query: 133 AIQFLTSMRVLFKWAVRQE-YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG-- 189 ++ +F + + NP + K + + +++ + +E Sbjct: 133 VNHEQRNLSAVFGTLKKLGHWQLPNPLAGIPTFKVDEKMVSFLYPAEIKTLLEYLNESNS 192 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTP 249 S L + L +G R S++ + + + K + +V + + + Sbjct: 193 SSVLLVAKICLATGARWSEAENLEGAQVTPYRITYRNTKNKKVRSVPISEKLYNEIPK-- 250 Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS----AHGVRKFSATISADAGATAH 305 + F+ KAG++ H +R A+ G Sbjct: 251 ---------KRGRLFTP--CRKTFERVIQKAGIDLPEGQCTHVLRHTFASHFMMNGGNIL 299 Query: 306 ELMATYGWKTVDQAETYTKGA 326 L G + Y A Sbjct: 300 VLKDILGHSDIKMTMIYAHFA 320 >gi|240047536|ref|YP_002960924.1| Tyrosine recombinase xerC [Mycoplasma conjunctivae HRC/581] gi|239985108|emb|CAT05101.1| Tyrosine recombinase xerC [Mycoplasma conjunctivae] Length = 326 Score = 97.0 bits (240), Expect = 4e-18, Method: Composition-based stats. Identities = 35/271 (12%), Positives = 94/271 (34%), Gaps = 16/271 (5%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS- 132 ++ + S + + + S D +++ + +I T +R+ + + ++ +S Sbjct: 51 IVELFIGSKTLEGCSDKTIKYYISTIDSMVKSI-NKQINEIETNDLRNYLSNYQYKNNSS 109 Query: 133 ---AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 + F W + Y+ +P +++ K ++ E+++ + + Sbjct: 110 KVTIDNIRRILSSFFSWLEDENYIVKSPVRRIKKVKAPITVKETYSDEELEIMRDNVN-N 168 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG-----FMKL 244 + + L +G+R + + ++ + N G + D K Sbjct: 169 YRDLALIDILASTGMRVGELVKLNIEDVDFNERECIVVGKGNKQRIVYFDARTKIHLKKY 228 Query: 245 LAMTPIGKETFFIN--NDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAG 301 L ++ F++ +++ + + K H R+ ATI+ D G Sbjct: 229 LDSRVDKNKSLFVSLKLPYGRISINGIESRLRKIGKDLNIKKVHPHKFRRTLATIAIDKG 288 Query: 302 ATAHELMATYGWKTVDQAETY--TKGADRIR 330 ++ G + VD Y K ++ + Sbjct: 289 MPIEQVQRLLGHEKVDTTLKYAMVKQSNVKK 319 >gi|9507525|ref|NP_052532.1| shufflon-specific recombinase [Plasmid ColIb-P9] gi|132191|sp|P16470|RCI2_ECOLX RecName: Full=Shufflon-specific DNA recombinase gi|216411|dbj|BAA14093.1| site-specific recombinase [Plasmid ColIb-P9] gi|4512522|dbj|BAA75171.1| shufflon-specific recombinase [Plasmid ColIb-P9] gi|70610245|gb|AAZ05392.1| shufflon-specific recombinase [Salmonella enterica] gi|321271455|gb|ADW79545.1| IncI1 shufflon-specific DNA recombinase Rci [Escherichia coli] gi|321271652|gb|ADW79740.1| IncI1 shufflon-specific DNA recombinase Rci [Salmonella enterica subsp. enterica serovar Kentucky] Length = 384 Score = 97.0 bits (240), Expect = 4e-18, Method: Composition-based stats. Identities = 44/281 (15%), Positives = 91/281 (32%), Gaps = 25/281 (8%) Query: 61 INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI------IRKSGDFDYRKI 114 + SPR + +L + +Y K+ + + + + D Sbjct: 1 MPSPRIRKMSLSRALDKYLKTVSVHKKGHQQEFYRSNVIKRYPIALRNMDEITTVDIATY 60 Query: 115 TTKHIRSGVESRKHTPSSAIQF---LTSMRVLFKWA-VRQEYVAINPCLSVERPKRKTEG 170 + + + R P + L + LF A V NP V +PK + Sbjct: 61 RDVRL-AEINPRTGKPITGNTVRLELALLSSLFNIARVEWGTCRTNPVELVRKPKVSSGR 119 Query: 171 IRPWTKEDMQQFKSFWSE-GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQ 227 R T + ++ ++ E + F L + +R + +H+ + + Sbjct: 120 DRRLTSSEERRLSRYFREKNLMLYVIFHLALETAMRQGEILALRWEHIDLRHGVAHLPET 179 Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM--NATQFSIWFKAKATKAGV-NK 284 K G V L L M P +N A+ F ++ + + + Sbjct: 180 KNGHSRDVPLSRRARNFLQMMP-------VNLHGNVFDYTASGFKNAWRIATQRLRIEDL 232 Query: 285 SAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTK 324 H +R + + + G E+ A G ++++ + YT Sbjct: 233 HFHDLRHEAISRFFELGSLNVMEIAAISGHRSMNMLKRYTH 273 >gi|298250834|ref|ZP_06974638.1| integrase family protein [Ktedonobacter racemifer DSM 44963] gi|297548838|gb|EFH82705.1| integrase family protein [Ktedonobacter racemifer DSM 44963] Length = 309 Score = 97.0 bits (240), Expect = 4e-18, Method: Composition-based stats. Identities = 46/270 (17%), Positives = 86/270 (31%), Gaps = 27/270 (10%) Query: 85 GSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESRKHT--PSSAIQFLTSM 140 G LA +SR ++ D + ++ + T S+A + Sbjct: 27 GQLAPSSRKTYTIDAKHFAHWLAGRDLSLTSLNRDNLVAYRTHLAETYAQSTAARMWAVA 86 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEG-IRPWTKED----MQQFKSFWSEGSQPRLA 195 R L AV++ + NP V K + +E+ + + G + Sbjct: 87 RRLLDEAVQRGLLLKNPAEGVRGFKTGDDESPHALKREEAKALLDAIDRRTALGKRDNAL 146 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFS----IKTQKTGTIITVELP--------DGFMK 243 LL +G+R +++ + L I+ K +LP D Sbjct: 147 LMLLLRTGIRRAEAVALTIGDLMMEQGYHIVIIRHGKGKKRGLAKLPVEVRQAIDDYLEA 206 Query: 244 LLAMTPIGKETFFINNDK------QKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATIS 297 + + FI+ K + ++ Q K +A G+ S HG+R T++ Sbjct: 207 VGRACAAPEAPLFISFRKGDHPQERPLHPNQVGRIVKQRAQVVGIVMSPHGMRASFITLA 266 Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGAD 327 + GA + K Y K + Sbjct: 267 FEGGADLALVQDGARHKDPRTTRRYQKRRN 296 >gi|315222639|ref|ZP_07864528.1| site-specific recombinase, phage integrase family [Streptococcus anginosus F0211] gi|315188325|gb|EFU22051.1| site-specific recombinase, phage integrase family [Streptococcus anginosus F0211] Length = 322 Score = 97.0 bits (240), Expect = 4e-18, Method: Composition-based stats. Identities = 43/280 (15%), Positives = 93/280 (33%), Gaps = 15/280 (5%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE----SRKH 128 LI + + + + +ES + K D D KITT +R ++ Sbjct: 46 DLIQLFLAAKRVEGCSNKTVHYYESTIRNAVEKI-DKDVVKITTDDLRMFLDGYQEENNI 104 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 + + + F W ++Y+ + + + K +T E ++ + Sbjct: 105 SKVTVDNIRRILSSFFAWLEDEDYIVKSSVRRIHKVKTCKTVKETYTDEALEIMRDECD- 163 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDG----FMK 243 G + + L +G+R + + + N + K V K Sbjct: 164 GLRDLAMIDLLASTGMRVGELVKLNCDDIDFENRECVVLGKGNKQRRVYFDARTKLHLQK 223 Query: 244 LLAMTPIGKETFFINNDKQ--KMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADA 300 L E F++ K ++ + I + K ++K H R+ AT + D Sbjct: 224 YLNSREDSNEALFVSLQKPYNRLLISGVEIRLRNLGEKLNLHKVHPHKFRRTLATTAIDK 283 Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340 G ++ G +++D Y ++ + + + I Sbjct: 284 GMPIEQVQQLLGHQSIDTTLQYA-MVNQNNVKQSHRKFIG 322 >gi|300786599|ref|YP_003766890.1| phage integrase family protein [Amycolatopsis mediterranei U32] gi|299796113|gb|ADJ46488.1| phage integrase family protein [Amycolatopsis mediterranei U32] Length = 326 Score = 97.0 bits (240), Expect = 4e-18, Method: Composition-based stats. Identities = 47/298 (15%), Positives = 100/298 (33%), Gaps = 41/298 (13%) Query: 88 AVNSRISFESYF--------DQIIRKSGDFDYRKITTKHIRSGVESRKHT--PSSAIQFL 137 + ++ ++ ++ R + D + +T +RS + SS ++ Sbjct: 26 SPHTTDAYRRDLAGITTLLVSELGRPAEDLEVADLTGPALRSAFGAFADGHAKSSVLRAW 85 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM-QQFKSFW---------S 187 ++ + V +A NP +V RP+ +P E+ +Q S Sbjct: 86 STWNQFLTFCVADGLLAGNPMGAVARPRTPALTPKPLRGEETPEQLLSAAAAGSRRARDP 145 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK---TQKTGTIITVELPDGFMKL 244 + L L +GLR ++ + L ++ K ++ + +L Sbjct: 146 WPERDVLVIALGLVAGLRAAEMRALSARSLVGRAGELRLHVKGKGSRDRSIPVQPVLAEL 205 Query: 245 LAM------------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN------KSA 286 + ++ + + K+ AG++ + Sbjct: 206 IERYRESCRVRFPNVRFSPGSPLLLDRAGEPIGRGALEYLVKSCYRGAGLHDRVPAGANL 265 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344 H +R AT A+ GATA E+MA G ++ ++ Y + R + S R +D Sbjct: 266 HALRHTFATRLAEDGATASEIMALLGHASLATSQNYIEATGREQRAAAASNRTYRALD 323 >gi|146329464|ref|YP_001208978.1| site-specific recombinase XerC [Dichelobacter nodosus VCS1703A] gi|146232934|gb|ABQ13912.1| site-specific recombinase XerC [Dichelobacter nodosus VCS1703A] Length = 302 Score = 97.0 bits (240), Expect = 4e-18, Method: Composition-based stats. Identities = 37/269 (13%), Positives = 89/269 (33%), Gaps = 19/269 (7%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRK-SGDFDYRKITTKHIRSGVESRKH-TP 130 +I + + + L+ + ++ +Q R G+ + +K + RK P Sbjct: 1 MIEAFLHALQYERGLSPQTCTTYRYSLNQAQRYFHGELEQQKANALQSYLNHQRRKRIAP 60 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK-RKTEGIRPWTKEDMQQFKS----F 185 + + ++R F W + NP ++++ PK RK + + +++ + Sbjct: 61 ITLNRHRAALRTYFSWLKQTRQRLDNPAMALQIPKIRKKTLPKTLSIDEITILLAPPNSE 120 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH---------LQNNIFSIKTQKTGTIITVE 236 + FE +GLR ++ + + + GT + Sbjct: 121 EPLTLRNHALFELAYSAGLRLAELIAINWRDCARLPDELIITGKGGYQRRIFIGTHAKMA 180 Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSA 294 L + ++ F++N ++++ A N+ + H +R A Sbjct: 181 LSKWLNVRAQIAAPEEKALFVSNQGRRIHPRSVEYILHRYAQSRLPNRHITPHMLRHSFA 240 Query: 295 TISADAGATAHELMATYGWKTVDQAETYT 323 A + G + + + YT Sbjct: 241 GHMLQACGDIRAVQDLLGHQRISTTQIYT 269 >gi|322435168|ref|YP_004217380.1| integrase family protein [Acidobacterium sp. MP5ACTX9] gi|321162895|gb|ADW68600.1| integrase family protein [Acidobacterium sp. MP5ACTX9] Length = 311 Score = 97.0 bits (240), Expect = 4e-18, Method: Composition-based stats. Identities = 41/271 (15%), Positives = 83/271 (30%), Gaps = 31/271 (11%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFD--YRKITTKHIRSGVESRKHTP---SSAIQFLTS 139 L NS ++ Q D T + + + + S + L+ Sbjct: 20 RGLRPNSCEAYGRDLLQFAEFLEKRDGLLVGATQQDVGEFLGQLRGHAVESRSVARKLSG 79 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----------QQFKSFWSEG 189 ++ +KW + + V +P L+V P + + ++ + Sbjct: 80 LKGFYKWLLMDKRVRHDPTLNVASPSVWKILPKSMAESEVVGMLERTGVAARAADADGIA 139 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPDGFMKLLAM- 247 + E L GLR + C V+ ++ + + G V L LA+ Sbjct: 140 LRDHAILELLYAGGLRVGEICALRVEDVRLEDQRAQVRGKGDKERIVPLGRQACDALAIY 199 Query: 248 TPIGKETF------------FINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSAT 295 G+ F++ + + + ++ G + S H +R AT Sbjct: 200 LDRGRPGLARGAGAGMRREMFLSVRGRALTRQWVWEMVRG-CSENG-DASPHKLRHSCAT 257 Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGA 326 + GA + G + + YT A Sbjct: 258 HMVEHGADLRSVQTFLGHADIATTQVYTHVA 288 >gi|152993870|ref|YP_001359591.1| phage integrase family site specific recombinase [Sulfurovum sp. NBC37-1] gi|151425731|dbj|BAF73234.1| site-specific recombinase, phage integrase family [Sulfurovum sp. NBC37-1] Length = 379 Score = 97.0 bits (240), Expect = 4e-18, Method: Composition-based stats. Identities = 50/353 (14%), Positives = 102/353 (28%), Gaps = 35/353 (9%) Query: 6 RLPPFVTKERTRHGKIIY--YFRKGHGRRIRLPYPHESTFI-----PAYMS-ALTGSTPK 57 R+ + K G+IIY FR G+ L +S + Y S + Sbjct: 9 RVATGIYKRIDAKGEIIYDINFRDEFGKNKFLKVGRKSDGVTVAYCKQYRSKIINMKYLG 68 Query: 58 REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK 117 + N +K T + +Y + + + Y D I G IT Sbjct: 69 EDVSNIRKKSSITFDDITEDYFEYVKYADFKEP-QSFANRYRDHIKDSLGHLPVESITKN 127 Query: 118 HIRSGVESRKHT---PSSAIQFLTSMRVLFKWAVRQEYVAINPCL----------SVERP 164 I + + K P++ + + F A+ +E NP + + Sbjct: 128 DINNLIMLLKDKNLAPATIDRIRQQVSATFNVAIGKEKCRNNPASVSRVDSSSLMRLNKK 187 Query: 165 KRKTEGIRPWTKEDMQQFKSFWSEGS-QPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNI 221 R +K++ S L +G R + + + + N Sbjct: 188 SINNARERYLSKDEANLLLSELKLRRFDVYFMALLALTTGARAGEILKIQYKDIDLENRY 247 Query: 222 FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA- 280 ++ K G+ +++ +L ++ + + + + Sbjct: 248 INLVETKNGSSRKIKITSKVYDILNEIEFESPNKYLFAGSKHDHLQAIPNIYSIIVGELF 307 Query: 281 --GVNKS-------AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 ++ H +R A+ A G + G K ++ Y K Sbjct: 308 NSELDSRDTKHRVCFHTLRHTFASWLAINGTPIFTIQKLMGHKDINMTLRYAK 360 >gi|134102479|ref|YP_001108140.1| integrase/recombinase [Saccharopolyspora erythraea NRRL 2338] gi|133915102|emb|CAM05215.1| integrase/recombinase [Saccharopolyspora erythraea NRRL 2338] Length = 325 Score = 97.0 bits (240), Expect = 4e-18, Method: Composition-based stats. Identities = 38/287 (13%), Positives = 87/287 (30%), Gaps = 30/287 (10%) Query: 68 PTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKS--GDFDYRKIT------TKH 118 P + + + + L+ ++ ++ ++ GD + + + + Sbjct: 22 PGPVGAAVDGFERHLKAERGLSAHTVRAYIGDVVSLLDHFCAGDEERKGLNGLGLTVLRE 81 Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 + + + S+ + S R WA R E + +P + P K + E Sbjct: 82 WLAAQHADGASRSTLARRAASARTFTAWAHRAELLPHDPGPRLAAPAPKRKLPTVLRAEQ 141 Query: 179 MQQF--------KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230 + + + E L +G+R S+ C + + + ++ G Sbjct: 142 AKSAMSASQAGAEQGDPIALRDHAVVELLYATGVRVSELCGLDLDDVDHERRVVRVIGKG 201 Query: 231 -----TIITVELPDGFMKLLAM------TPIGKETFFINNDKQKMNATQFSIWFKAK--A 277 V D + ++ T F+ +++ A Sbjct: 202 DKERAVPFGVPAEDAVSRWISAGRPELATDASGPALFLGARGGRLDPRAVRRVVHDAVGA 261 Query: 278 TKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 + HG+R +AT + GA + G T+ + YT Sbjct: 262 VSGATDVGPHGLRHSAATHLLEGGADLRSVQELLGHATLATTQLYTH 308 >gi|323973095|gb|EGB68288.1| phage integrase [Escherichia coli TA007] Length = 334 Score = 97.0 bits (240), Expect = 4e-18, Method: Composition-based stats. Identities = 55/311 (17%), Positives = 107/311 (34%), Gaps = 14/311 (4%) Query: 19 GKIIYYFRKGHGRRIRLPYPHESTFIP-AYMSALTGSTPKREYINSPRKKPTTLKWLISE 77 G+ + R + R+ + + A + + KREYI R + TL L+ Sbjct: 9 GRYLLDIRPNGRKGKRVRKVFDKKSVAVATERYIMANAEKREYIQGYRDR-RTLNDLLEL 67 Query: 78 Y-RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQF 136 + A R + +++ D K+ RS + PSSA ++ Sbjct: 68 WWMYHGQHRRKAEEDRKQLRNIINELGADMQAVDLDKLKIIAWRSQKIADGLKPSSANRY 127 Query: 137 LTSMRVLFKWAVRQE-YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA 195 + + +F + + A +P + + +++++ EG R+A Sbjct: 128 MNRLSGMFTVLKKIGLWDAEHPVRGISILYVSPREMAFLSQKEVALLLDTL-EGDYWRVA 186 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF 255 L +G R S++C+ + + +N + K G TV + + + G Sbjct: 187 L-LCLSTGARWSEACKLRGEQIVHNRVTFLETKNGRKRTVPISQAVCEAIKTKETGN--L 243 Query: 256 FINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKT 315 F ++ F + K ++AH +R A+ G L G T Sbjct: 244 FEVKYRE------FCLMLKRVKPDLPKGQAAHVLRHTFASHFVMNGGNIIALQKILGHAT 297 Query: 316 VDQAETYTKGA 326 + Q Y A Sbjct: 298 IQQTMAYAHFA 308 >gi|255505939|ref|ZP_05349026.3| integrase/recombinase, phage integrase family [Bryantella formatexigens DSM 14469] gi|255264981|gb|EET58186.1| integrase/recombinase, phage integrase family [Bryantella formatexigens DSM 14469] Length = 332 Score = 97.0 bits (240), Expect = 4e-18, Method: Composition-based stats. Identities = 38/265 (14%), Positives = 90/265 (33%), Gaps = 15/265 (5%) Query: 88 AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH----TPSSAIQFLTSMRVL 143 + + + S ++++R + RKI+T+ IR + + + + ++ Sbjct: 71 SARTIQYYSSTVERMLRNI-EQPIRKISTEEIRKYLVDYQKINNCSKVTVDNIRRNISSF 129 Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSG 203 F W ++Y+ +P + + K K + E ++ + S+ + L +G Sbjct: 130 FSWLEEEDYILKSPMKRIHKIKTKQPVKETISDEAIELLRDSCEC-SRDLAMIDLLYSTG 188 Query: 204 LRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDG----FMKLLAMTPIGKETFFIN 258 +R + + + I K V L F++ Sbjct: 189 IRVGELVNLNISDVDFEARECIVFGKGDKERKVYFDAKAKLHLQNYLKTRADDNPALFVS 248 Query: 259 NDKQK--MNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKT 315 D+ + + I ++ K + K H R+ AT + D G ++ G Sbjct: 249 LDEPHDRLKISGVEIRIRSLGRKLNMEKIHPHKFRRTMATRAIDKGMPIEQVQKILGHSQ 308 Query: 316 VDQAETYTKGADRIRLGIKNSRRIS 340 +D Y ++ + + + I+ Sbjct: 309 IDTTMQYA-IVNQTNVKTSHQKFIA 332 >gi|242278903|ref|YP_002991032.1| integrase family protein [Desulfovibrio salexigens DSM 2638] gi|242121797|gb|ACS79493.1| integrase family protein [Desulfovibrio salexigens DSM 2638] Length = 439 Score = 97.0 bits (240), Expect = 4e-18, Method: Composition-based stats. Identities = 45/292 (15%), Positives = 95/292 (32%), Gaps = 30/292 (10%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS-GDFDYRKITTKHIRSGVES--R 126 TLK +Y + G + S +F+ +I +IT + ++ + Sbjct: 152 TLKEFADQYVEYCT-GRINPRSVKEKRRHFNTLIAHFTESCFVEEITAFKMNKFLQEVLK 210 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVA-----INPCLSVERPKRKTEGIRPWTKEDMQQ 181 T + + ++ + WA +V +P ++++ + KED+ + Sbjct: 211 TKTGNMVNIIMKHLKAAWSWA--GGFVEGFPQNSDPFRNIQKFPEQRHPRYVPPKEDLDK 268 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSI----KTQKTGTIITV 235 Q R+ + Y+G R ++ + + +N + + + Sbjct: 269 VFDVAE--GQDRVMLKTFYYTGGRKNEIFSLKWEDVLFDSNQIRLWTNKRKHGNRESNLI 326 Query: 236 ELPDGFMKLL----AMTPIGKETFFINNDKQKMNATQF----SIWFKAKATKAGVNK-SA 286 + ++L P + FI K+ Q + + KAGV + Sbjct: 327 PMVKELKRILTEWKKACPCESDYVFIEVRKKAPTYGQRYVYRKGFMERHCDKAGVKRFGF 386 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK--GADRIRLGIKNS 336 HG+R AT + G + K + Y G DR ++ Sbjct: 387 HGIRHLFATTLYNNGQPLAVVQKMMRHKNPNTTVRYLHEMGLDRALEAVEGV 438 >gi|80159790|ref|YP_398534.1| XerC/D family recombinase [Clostridium phage c-st] gi|78675380|dbj|BAE47802.1| XerC/D family recombinase [Clostridium phage c-st] Length = 317 Score = 97.0 bits (240), Expect = 4e-18, Method: Composition-based stats. Identities = 49/285 (17%), Positives = 102/285 (35%), Gaps = 26/285 (9%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES---- 125 T+K+L ++Y+ L+ + ++E D + + T+ + Sbjct: 23 TMKYL-NKYKIDMSIRELSEKTIYNYEMDLYNWFTYILDKQFNQCITELNEDDIMEFLYF 81 Query: 126 ---RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR--PWTKEDMQ 180 + + + + S+ +K+ ++ + NP ++RP++ T+ + TK+ ++ Sbjct: 82 CKQQGNNSRRMKRRMASISAFYKFLRKKRIIKENPMEFIDRPRKDTDVVTQTFLTKDQVE 141 Query: 181 QFKSFWSEGSQPRLA--FEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVE 236 Q K E +L L + R + + + N I S +K G I+ + Sbjct: 142 QIKRKLKEHGDIQLETYVLLSLSTMARVNAISNIKWEQIDFENRIISDVLEKEGKIVDLY 201 Query: 237 LPDGFMKLLAMTP-------IGKETFFINNDKQKMN---ATQFSIWFKAKATKAGVN-KS 285 +LL I E FI+ + + + S W K GV Sbjct: 202 FNKEVKELLLQLQSIRKENNIDSEYVFISKYNKGYSNVNTSTLSKWTKKVGEMIGVPTLH 261 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAET-YTKGADRI 329 H R AT+ +AG + + + +D + Y K + Sbjct: 262 CHDWRHSGATLLKNAGMPIERVSSLLHHEGLDVTKKFYIKEDTQK 306 >gi|297160045|gb|ADI09757.1| putative integrase [Streptomyces bingchenggensis BCW-1] Length = 428 Score = 97.0 bits (240), Expect = 4e-18, Method: Composition-based stats. Identities = 54/334 (16%), Positives = 110/334 (32%), Gaps = 61/334 (18%) Query: 57 KREYINSPRKKPT---TLKWLISEYRKSAHWGSLAVNSRISFE-SYFDQIIRKSGDFDYR 112 +++ KKP T+K ++ + ++ ++ N+ + + + +I G Sbjct: 61 EKQRDAKTVKKPGKAWTVKAWLTHWVENVAPLAVNDNTMVGYGVAVRKHLIPGLGAHRLD 120 Query: 113 KITTKHIRSGVES---RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169 ++ +HI + P++A Q + R AVR+ ++ NP + PK Sbjct: 121 RLKPEHIEAFYAKTQANGSKPATAHQVHRTFRTALNEAVRRGHLGKNPVQLAKAPKTGEY 180 Query: 170 GIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQ 227 + P++ +++Q+ + + + L GLR + + + ++ Sbjct: 181 EVEPYSVQEVQRLLKAADQH-RNSARWAVALALGLRQGEVLGLKWEDVDLEGGFLVVRRS 239 Query: 228 K------------------------------------TGTIITVELPDGFMKLLAM---- 247 + V LPD + LL Sbjct: 240 RHRPQYAHGCVEPCGRKAAGYCPQRRRTNPELSTTKSRAGRRAVGLPDQLVDLLRAHLKA 299 Query: 248 -----TPIGK-----ETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATI 296 T GK + F + + + + +KA +A V + H R +AT+ Sbjct: 300 QEVERTEAGKCWEDNDLVFPDEHGRSPSHRRDWTEWKALLAEAKVRDGRLHDARHTAATV 359 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 G +M GW T A Y D +R Sbjct: 360 LLILGVPERAVMGLMGWSTTAMAARYQHMVDAVR 393 >gi|265763640|ref|ZP_06092208.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_16] gi|263256248|gb|EEZ27594.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_16] Length = 165 Score = 96.6 bits (239), Expect = 4e-18, Method: Composition-based stats. Identities = 29/144 (20%), Positives = 53/144 (36%), Gaps = 15/144 (10%) Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT----QKTGTIITVELPDGFMKLL--AMT 248 A+ F + GLR SD + + + + QKT I + L + +K + Sbjct: 17 AYLFSCFCGLRISDIIGLQWKDVFIDNGQYRLAVAMQKTKEPIYLPLSNEALKWMPERGD 76 Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHE 306 + F + + K A AG++K + H R AT+ GA + Sbjct: 77 KTADDHVF-------DLPSGINQLIKPWAKAAGISKRFTFHTARHTFATMMLTLGADLYT 129 Query: 307 LMATYGWKTVDQAETYTKGADRIR 330 + G +V + Y K ++ + Sbjct: 130 VSKLLGHTSVKMTQVYAKIVNKKK 153 >gi|153853140|ref|ZP_01994549.1| hypothetical protein DORLON_00534 [Dorea longicatena DSM 13814] gi|149753926|gb|EDM63857.1| hypothetical protein DORLON_00534 [Dorea longicatena DSM 13814] Length = 366 Score = 96.6 bits (239), Expect = 4e-18, Method: Composition-based stats. Identities = 61/370 (16%), Positives = 116/370 (31%), Gaps = 84/370 (22%) Query: 7 LPPFVTKERTRHGKIIYYFR---KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS 63 LPPFV YFR R R+ Y ++ I + L + P + Sbjct: 38 LPPFVKD----------YFRAMEPKSSARTRINYAYD---IRVFFHFLMENNPVYKNYTI 84 Query: 64 PRKKPTTLKWL----ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119 R P L+ L I EY + ++ D + +G+ Sbjct: 85 DRFTPQDLENLEPVDIEEYLE----------YLKVYKRDEDGELITNGEKGLA------- 127 Query: 120 RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179 + ++++R + + + + NP L V+ PK + I +++ Sbjct: 128 ---------------RKMSALRSFYGYYFKHRIIQKNPTLLVDMPKLHDKAIIRLDTDEV 172 Query: 180 QQFKSFWSEG--------------SQPR--LAFEFLLYSGLRCSDSCRAGVQHLQ-NNIF 222 F ++ R LL +G+R S+ ++ + N Sbjct: 173 ALLLDFVESAGEHLTGQALNYYKKTRDRDIAILTLLLGTGIRVSECVGLDIKDVDFKNNG 232 Query: 223 SIKTQKTGTIITVELPDGFMKLLA-----------MTPIGKETFFINNDKQKMNATQFSI 271 + T+K G + V D + L P ++ F++ +++M Sbjct: 233 IMVTRKGGNQMVVYFGDEVAEALKNYMAGDREAATPLPGHEQALFLSTQRKRMGVQAVEN 292 Query: 272 WFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK-GAD 327 K A + NK + H +R T + + G K V+ + Y + Sbjct: 293 MVKKYARQVTPNKKITPHKLRSTYGTSLYKETGDIYLVADVLGHKDVNTTKKHYAAIDDN 352 Query: 328 RIRLGIKNSR 337 R R + Sbjct: 353 RRRKAASAVK 362 >gi|313895830|ref|ZP_07829384.1| site-specific recombinase, phage integrase family [Selenomonas sp. oral taxon 137 str. F0430] gi|312975255|gb|EFR40716.1| site-specific recombinase, phage integrase family [Selenomonas sp. oral taxon 137 str. F0430] Length = 363 Score = 96.6 bits (239), Expect = 4e-18, Method: Composition-based stats. Identities = 62/314 (19%), Positives = 113/314 (35%), Gaps = 45/314 (14%) Query: 57 KREYINSPRKKPT-TLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKI 114 ++E++ + P+ TL+ L Y + + + + ES F ++I+ G + KI Sbjct: 43 EQEFLRQKTESPSMTLESLYHLYMEDLR-HRIRPTTYSTKESIFSNRILPHLGQYPCDKI 101 Query: 115 TTKHIRSGVE---SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP-KRKTEG 170 T K IR + +++P+ + LF +AV+ + +NP SV+ K E Sbjct: 102 TPKIIRQWQNLLVADEYSPTYLKMINGQLVSLFNFAVKYYGLYVNPMKSVDTIGKSSAEA 161 Query: 171 IRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT- 229 ++ WT ++ +F S + F L ++G+R + ++ QK+ Sbjct: 162 MQFWTVDEFNRFILTQSSPLH-KTIFMLLFWTGMRVGELLALTYADFDLEKKIVRVQKSY 220 Query: 230 ---------------GTIITVELPDGFM-------KLLAMTPIGKETFFINNDKQKMNAT 267 G+ V LP + + L F + + T Sbjct: 221 IRLKGKDLIGPPKTPGSNRVVSLPSFLVDNLMSFFESLKPLDPNARLFIVTRASIRRLHT 280 Query: 268 QFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQ-----AET 321 A KAGV H +R A+ G E+ G ++ A Sbjct: 281 G--------AKKAGVKLIRIHDLRHSHASYLIHIGVPIMEVSKRLGHDKIETTLRTYAHL 332 Query: 322 YTKGADRIRLGIKN 335 Y K D + I+N Sbjct: 333 YPKEHDVVLEAIEN 346 >gi|255011874|ref|ZP_05284000.1| integrase [Bacteroides fragilis 3_1_12] gi|313149708|ref|ZP_07811901.1| integrase [Bacteroides fragilis 3_1_12] gi|313138475|gb|EFR55835.1| integrase [Bacteroides fragilis 3_1_12] Length = 363 Score = 96.6 bits (239), Expect = 4e-18, Method: Composition-based stats. Identities = 33/251 (13%), Positives = 84/251 (33%), Gaps = 24/251 (9%) Query: 96 ESYFDQIIRK---SGDFDYRKITTKHIRSGVES-----RKHTPSSAIQFLTSMRVLFKWA 147 +F++ + D + +K + ++A + + + A Sbjct: 111 RLHFEEFCERKCSFRDLSVSLCEKYRAYILRDKHLTSSKKISHNTASAYFNVFLKMVRLA 170 Query: 148 VRQEYVAINPCLSVERPKRKTE-GIRPWTKEDMQQFKS--FWSEGSQPRLAFEFLLYSGL 204 + ++ + ++ + + +++ + + P+ F +++GL Sbjct: 171 YEDKIISHDYTEIIKPIVWNHDTLKEYLSNDEVNILRQTPYSPYPELPKACL-FSIFTGL 229 Query: 205 RCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINND 260 R SD +++ N I+ KTG +I + L + +L F Sbjct: 230 RRSDILALRWENIVKRSHNTFIEIQCSKTGVLIRLPLSKPALNVLGKRKEEGIVF----- 284 Query: 261 KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318 Q + + ++ + AG+ K + H R A + + G + + K V Sbjct: 285 -QSLTISILNLHVQKWLASAGITKHITFHCFRHTFAMLLQEKGVEIYTISKLLAHKQVSS 343 Query: 319 AETYTKGADRI 329 + Y K ++ Sbjct: 344 TQIYAKVTNQQ 354 >gi|228986847|ref|ZP_04146975.1| Prophage LambdaBa04, site-specific recombinase, phage integrase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228772929|gb|EEM21367.1| Prophage LambdaBa04, site-specific recombinase, phage integrase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 357 Score = 96.6 bits (239), Expect = 4e-18, Method: Composition-based stats. Identities = 49/306 (16%), Positives = 96/306 (31%), Gaps = 48/306 (15%) Query: 84 WGSLAVNSRI-----SFESYFD----QIIRKSGDFDYRKITTKHIRSGVESRKHTP---S 131 W L + S+E I+ G + I I+ K Sbjct: 47 WEKLKPIRKAELKITSYEKDMSLVRLYILPTFGYKKIKSIKPVMIQCYYAELKEKGLSNG 106 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191 + R +FK AV E + N V++P+ + ++ W+ E+ +F + E ++ Sbjct: 107 TISNIHRCFRCIFKHAVEWEIIHNNIMNKVKKPREEQGEMKTWSSEECNRFLHYLKEKNK 166 Query: 192 PRLAFEFL-LYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPI 250 F L +Y+G+R + + + + I K+ L + K + Sbjct: 167 KYYMFFLLAIYTGMRRGELLALTWKDIDFDNRRILVNKSIVKTEEGLFNAATKTKSSNRS 226 Query: 251 GKETFFINNDKQKMN---ATQFSIW----------------------------FKAKATK 279 + F+ + Q +F W K K Sbjct: 227 ISISSFVVTELQSYYVYKKKEFFRWGIHLNEEAFIFAGNTIHSPLHIDAPHRFLKDHYKK 286 Query: 280 AGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSR 337 AGV + H +R AT+ AG + G ++ + Y+ + + + Sbjct: 287 AGVPRIRIHDLRHTHATLMLQAGEHPKIVQDRLGHSSIQMTLDKYSHITQ--NMQQQAAE 344 Query: 338 RISSVV 343 +V+ Sbjct: 345 NFENVI 350 >gi|55980943|ref|YP_144240.1| integrase/recombinase [Thermus thermophilus HB8] gi|55772356|dbj|BAD70797.1| integrase/recombinase [Thermus thermophilus HB8] Length = 313 Score = 96.6 bits (239), Expect = 4e-18, Method: Composition-based stats. Identities = 47/243 (19%), Positives = 90/243 (37%), Gaps = 20/243 (8%) Query: 113 KITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVR-QEYVAINPCLSVERPKRKTEGI 171 + + +R+ + + P FL ++R +++ + A +P + RPK Sbjct: 69 SPSPEAVRALLLRERWAPRRVQGFLAALRSYYRYLREVKGEAASDPTEGIGRPKAGRRLP 128 Query: 172 -RPWTKE---DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS---- 223 P +E ++ F+ LA FL +GLR S++ +++ S Sbjct: 129 LHPGPEELKRFLEAFREEKEAALLEALAR-FLYGTGLRISEALSLKGRNVVLEGGSPVAV 187 Query: 224 IKTQKTGTIITVELPDGFMKLLAMT--PIGKETFFINNDKQKMNATQFSIW----FKAKA 277 K V L ++L P G F + ++ + W F+ A Sbjct: 188 RVVGKGNKERLVPLSKTAREVLEALGRPQGNVNIFTFSQGRRKGHVPSARWVEAKFREAA 247 Query: 278 TKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIK 334 +AG++ + H +R AT+ + G + G +++ + Y A R RL Sbjct: 248 LRAGLDPRRFTPHKLRHAYATLLVERGVELDAVKDLLGHESIATTQIYLH-ASRERLREA 306 Query: 335 NSR 337 SR Sbjct: 307 ASR 309 >gi|32470244|ref|NP_863468.1| shufflon-specific DNA reconbinase [Salmonella enterica subsp. enterica serovar Typhimurium] gi|195940258|ref|ZP_03085640.1| shufflon-specific DNA recombinase [Escherichia coli O157:H7 str. EC4024] gi|299836175|ref|YP_003717744.1| shufflon-specific DNA recombinase [Escherichia coli ETEC 1392/75] gi|132190|sp|P10487|RCI1_ECOLX RecName: Full=Shufflon-specific DNA recombinase gi|4903104|dbj|BAA77989.1| shufflon-specific DNA recombinase [Plasmid R64] gi|20521612|dbj|BAB91676.1| shufflon-specific DNA reconbinase [Salmonella enterica subsp. enterica serovar Typhimurium] gi|297374524|emb|CBL93603.1| shufflon-specific DNA recombinase [Escherichia coli ETEC 1392/75] gi|323133131|gb|ADX20559.1| shufflon-specific DNA reconbinase [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323959213|gb|EGB54879.1| phage integrase [Escherichia coli H489] Length = 384 Score = 96.6 bits (239), Expect = 4e-18, Method: Composition-based stats. Identities = 44/281 (15%), Positives = 91/281 (32%), Gaps = 25/281 (8%) Query: 61 INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI------IRKSGDFDYRKI 114 + SPR + +L + +Y K+ + + + + D Sbjct: 1 MPSPRIRKMSLSRALDKYLKTVSVHKKGHQQEFYRSNVIKRYPIALRNMDEITTVDIATY 60 Query: 115 TTKHIRSGVESRKHTPSSAIQF---LTSMRVLFKWA-VRQEYVAINPCLSVERPKRKTEG 170 + + + R P + L + LF A V NP V +PK + Sbjct: 61 RDVRL-AEINPRTGKPITGNTVRLELALLSSLFNIARVEWGTCRTNPVELVRKPKVSSGR 119 Query: 171 IRPWTKEDMQQFKSFWSE-GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQ 227 R T + ++ ++ E + F L + +R + +H+ + + Sbjct: 120 DRRLTSSEERRLSRYFREKNLMLYVIFHLALETAMRQGEILALRWEHIDLRHGVAHLPET 179 Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM--NATQFSIWFKAKATKAGV-NK 284 K G V L L M P +N A+ F ++ + + + Sbjct: 180 KNGHSRDVPLSRRARNFLQMMP-------VNLHGNVFDYTASGFKNAWRIATQRLRIEDL 232 Query: 285 SAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTK 324 H +R + + + G E+ A G ++++ + YT Sbjct: 233 HFHDLRHEAISRFFELGSLNVMEIAAISGHRSMNMLKRYTH 273 >gi|148256274|ref|YP_001240859.1| putative phage-like integrase [Bradyrhizobium sp. BTAi1] gi|146408447|gb|ABQ36953.1| putative phage-like integrase [Bradyrhizobium sp. BTAi1] Length = 434 Score = 96.6 bits (239), Expect = 4e-18, Method: Composition-based stats. Identities = 48/246 (19%), Positives = 93/246 (37%), Gaps = 13/246 (5%) Query: 102 IIRKSGDFDYRKIT--TKHIRSGVESRKHTPSSAI--QFLTSMRVLFKWAVRQEYVAINP 157 ++ GD Y I +H G+ R PS A ++ LFKW R+ + +NP Sbjct: 178 VLDFDGDEIYALIAEARRHGVPGMARRSAAPSDARGRHMAAALSALFKWLHRERRIKVNP 237 Query: 158 CLSVERPKRKTEGIRPWTKEDMQQFKSFW-SEGSQPRLAFEFLLYSGLRCSDSCRAGVQH 216 L + +P R + ++++F + + GS + LL +G R ++ R Sbjct: 238 VLGLSKPPNSPSRRRFLSDAEIKKFWAACTTLGSPFGPMLKLLLLTGQRLNEIARLHDTE 297 Query: 217 LQNNIFSIKTQKTGTII--TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFK 274 L + + +T + V L ++LA + ++ + + + FS Sbjct: 298 LTDEAIRLPGSRTKNALPHDVPLSSLAKEVLAEVQRVPNSKYVFSTNGRAPVSGFSKAKS 357 Query: 275 AKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKT---VDQAETYTKG--ADR 328 + H +R+ +AT A+ G H + A + A Y + A+ Sbjct: 358 RIDDLLNIEPWVFHDLRRSAATGMAEIGIQPHVIEAILNHISGHKASVAGIYNRAAYANE 417 Query: 329 IRLGIK 334 R ++ Sbjct: 418 KREALE 423 >gi|163745808|ref|ZP_02153167.1| site-specific tyrosine recombinase XerC [Oceanibulbus indolifex HEL-45] gi|161380553|gb|EDQ04963.1| site-specific tyrosine recombinase XerC [Oceanibulbus indolifex HEL-45] Length = 314 Score = 96.6 bits (239), Expect = 4e-18, Method: Composition-based stats. Identities = 46/305 (15%), Positives = 88/305 (28%), Gaps = 32/305 (10%) Query: 54 STPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQII--------RK 105 S + SP + WL + + A N+ ++ + + Sbjct: 2 SAEANPLLISPAARDALQTWLTHQ----SALKGAAENTVTAYRGDVTEFLAFMTLHKGDT 57 Query: 106 SGDFDYRKITTKHIRSGVESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE 162 G KIT +R+ + + S + L++++ ++W +E L Sbjct: 58 QGLGALAKITISDMRAWMARMRSGGVGSRSVARKLSAVKAFYRWLAEREGFEPTAVLLTR 117 Query: 163 RPKRKTEGIRPWTKEDMQQFKSFWS-------EGSQPRLAFEFLLYSGLRCSDSCRAGVQ 215 PK + + RP ++ + ++ L GLR S++ Sbjct: 118 SPKFQKKLPRPLAEDAARALIDCVETQARAPWVAARDVAVLTMLWGCGLRISEALALKGG 177 Query: 216 HLQNNIFSIKTQKTGTIITVELPDGFMKLL-------AMTPIGKETFFINNDKQKMNATQ 268 K G V + + F + A Sbjct: 178 DAPLPSSLRILGKGGKERVVPVLPAARAAVEDYLAVCPHPQEPHAPLFRAIRGGALGARA 237 Query: 269 FSIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 + + G+ +A H +R AT DAG + G ++ + YT Sbjct: 238 VAQVMADARMQLGLPATATPHAMRHSFATHLLDAGGDLRAIQELLGHASLSTTQAYT-AV 296 Query: 327 DRIRL 331 D RL Sbjct: 297 DTARL 301 >gi|148724460|ref|YP_001285426.1| integrase [Cyanophage Syn5] gi|145588105|gb|ABP87924.1| integrase [Synechococcus phage Syn5] Length = 262 Score = 96.6 bits (239), Expect = 4e-18, Method: Composition-based stats. Identities = 46/260 (17%), Positives = 87/260 (33%), Gaps = 16/260 (6%) Query: 70 TLKWLISEYRKSAHWGSL-AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH 128 T Y HW L + + + + R + T+ + S ++ + Sbjct: 3 TFAD-CYRYTFQHHWKRLASAGTTQINYKHITGVSRPIAELSRGAWWTE-LVSHLQDQGL 60 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 PS+ + L + + + RPK K + +T+E+++Q + Sbjct: 61 APSTIHKVLAVATHAVNFTRKAGLHDVTI-PEFSRPKLKAKRRPHFTREEVEQLLGHCAP 119 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT 248 A Y+GLR + +H+Q+N + K G V L + ++ Sbjct: 120 NLAE--AVLTAAYTGLRQDELLSLRAEHVQDNGLHVVDSK-GDDRFVPLHPKLITIINRR 176 Query: 249 PIGKETFFINNDKQKM-NATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAH 305 F N Q FK + AG+ K H +R T A+ A+ Sbjct: 177 LTNDRLF-----GDDWLNKDQLYGAFKKARSAAGLSDKKVWHSLRHSFGTFLAETQ-PAN 230 Query: 306 ELMATYGWKTVDQAETYTKG 325 + G K++ ++ Y Sbjct: 231 VIKDLMGHKSIVTSQIYIHS 250 >gi|293602012|ref|ZP_06684467.1| phage integrase family site-specific recombinase [Achromobacter piechaudii ATCC 43553] gi|292819542|gb|EFF78568.1| phage integrase family site-specific recombinase [Achromobacter piechaudii ATCC 43553] Length = 372 Score = 96.6 bits (239), Expect = 4e-18, Method: Composition-based stats. Identities = 50/293 (17%), Positives = 101/293 (34%), Gaps = 30/293 (10%) Query: 60 YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119 YI + T++ ++ Y K + +++ IIR G + + + + Sbjct: 50 YIQRAPAERMTVEAALTRYLKEVT-PTKRESTQAGEHKKAQVIIRHLGKYSLAALNAEIV 108 Query: 120 RSGVESR---------KHTPSSAIQF---LTSMRVLFKWAVRQEY---VAINPCLSVERP 164 + R K P S L + LF A++ E+ + NP ++ RP Sbjct: 109 AQFRDMRLAGDPDKKGKLRPRSNNTVRLELALLGHLFTVAIK-EWGIGLPFNPVSNIRRP 167 Query: 165 KRKTEGIRPWTKEDMQQFKSFWSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQNNIF 222 + R T E+ + + S P + +G+R S+ ++ + Sbjct: 168 APGSGRNRRLTSEEQTRLLQAVDKHSNPMFGWIVRIAVQTGMRLSEIATLRIRQVDIERR 227 Query: 223 SIKTQ--KTGTIITVELPDGFMKLLAMT------PIGKETFFINNDKQK--MNATQFSIW 272 ++ + K + TV L ++ P E F + F Sbjct: 228 VVRLEHTKNSSPRTVPLTAEATRVFTEALANPLRPAETELVFFGEPGRDGIRRPYLFDKA 287 Query: 273 FKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 + AG+ + H +R + + +AG + E+ A G K++ + YT Sbjct: 288 WTDAKRAAGLEDFRFHDLRHEAVSRFVEAGLSDQEVSAISGHKSMQMLKRYTH 340 >gi|302343317|ref|YP_003807846.1| integrase family protein [Desulfarculus baarsii DSM 2075] gi|301639930|gb|ADK85252.1| integrase family protein [Desulfarculus baarsii DSM 2075] Length = 325 Score = 96.6 bits (239), Expect = 4e-18, Method: Composition-based stats. Identities = 42/281 (14%), Positives = 85/281 (30%), Gaps = 34/281 (12%) Query: 76 SEYRKSAHWGSLAVNSRISFESYFDQIIR----KSGDFDYRKITTKHIRSGVESRKHTPS 131 Y + +R ++ Q+ K G + ++ +R+ + R T + Sbjct: 18 DRYLAEGA--GVMPRTRQAYARDARQLAEFIAVKRGGKPWGQVDADDVRAWLAERLRTSA 75 Query: 132 SAI--QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF------- 182 A + L + R F++ R V NP + PK + + + ++ Sbjct: 76 RATVGRKLAAARAWFEFLRRAGLVESNPARLAQPPKLEKKLPARLSVDEAFHLVDGPNRP 135 Query: 183 -------KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF--SIKTQKTGTII 233 + + E L SGLR + L+ ++ ++ K G Sbjct: 136 RPGRRDDAKATARRLRDAAVLELLYSSGLRVGELVALDRPDLRLDLGVARVRQGKGGKER 195 Query: 234 TVEL----PDGFMKLLAMTPIGKETFFI----NNDKQKMNATQFSIWFKAKATKAGVNKS 285 V + + LA P NN +++ A + + Sbjct: 196 VVPVGAKAAQALERYLAARPALLAGEAAALFLNNAGGRLSVRGVQKIVAANQDGLAIGRR 255 Query: 286 --AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R AT + GA + G ++ + Y Sbjct: 256 IGPHALRHAMATHLLEGGADLRSVQEMLGHASLSTTQKYLH 296 >gi|189426739|ref|YP_001953915.1| integrase domain protein SAM domain protein [Geobacter lovleyi SZ] gi|189422998|gb|ACD97395.1| integrase domain protein SAM domain protein [Geobacter lovleyi SZ] Length = 337 Score = 96.6 bits (239), Expect = 4e-18, Method: Composition-based stats. Identities = 50/294 (17%), Positives = 106/294 (36%), Gaps = 36/294 (12%) Query: 73 WLISE----YRKSAHWGSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGVESR 126 LI + + G ++ ++ S+ + + + + D TT H+++ + Sbjct: 33 DLIDQAAEWFALDVANGDARPDTIATYISHLNHWLNWCRVNNIDPGHATTTHLKAFRQEL 92 Query: 127 KHTPSSAIQF---LTSMRVLFKWAVRQEYVAINPCLSVERPKRKT---EGIRPWTKEDMQ 180 + ++ LT++R + AV + + NP V+ P+++T E I+ T + + Sbjct: 93 VQSGAAHATISLKLTTVRRFYDGAVSRGLLEANPVNGVKAPRKRTADAEIIKCLTAGETE 152 Query: 181 QFKSFWSEG-----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTII 233 +F + R + GLR + CRA ++ ++ ++ I G Sbjct: 153 RFFEAIPHDHKLKSLRDRAMAALMTLEGLRRIEICRANLEDIEETDSGVRILVHGKGKDG 212 Query: 234 TV-ELPDGFMK----LLAMTPI----GKETFFINNDKQ-----KMNATQFSIWFKAKATK 279 + D L+ P+ E F++ K ++ S W K Sbjct: 213 YIYPREDTVACIQNYLIQRGPVQSDKDGEPIFVSLSKGDKVRGRITRIGLSKWIDTMLAK 272 Query: 280 AGVNKSA---HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 AG+ K H +R + A + T ++ A Y+ +R + Sbjct: 273 AGITKKGRGCHALRHTCGALLYQATRDVKVVQETLRHASIAMAAKYSHVQERGK 326 >gi|69247698|ref|ZP_00604457.1| Phage integrase [Enterococcus faecium DO] gi|257883247|ref|ZP_05662900.1| phage integrase [Enterococcus faecium 1,231,502] gi|257891822|ref|ZP_05671475.1| phage integrase [Enterococcus faecium 1,231,410] gi|258616941|ref|ZP_05714711.1| phage integrase family site specific recombinase [Enterococcus faecium DO] gi|260559279|ref|ZP_05831461.1| phage integrase [Enterococcus faecium C68] gi|261207244|ref|ZP_05921932.1| phage integrase [Enterococcus faecium TC 6] gi|289567468|ref|ZP_06447824.1| phage integrase [Enterococcus faecium D344SRF] gi|293562793|ref|ZP_06677267.1| site-specific recombinase, phage integrase family [Enterococcus faecium E1162] gi|294618145|ref|ZP_06697737.1| site-specific recombinase, phage integrase family [Enterococcus faecium E1679] gi|314940445|ref|ZP_07847597.1| site-specific recombinase, phage integrase family [Enterococcus faecium TX0133a04] gi|314942379|ref|ZP_07849225.1| site-specific recombinase, phage integrase family [Enterococcus faecium TX0133C] gi|314953889|ref|ZP_07856751.1| site-specific recombinase, phage integrase family [Enterococcus faecium TX0133A] gi|314994453|ref|ZP_07859735.1| site-specific recombinase, phage integrase family [Enterococcus faecium TX0133B] gi|314996983|ref|ZP_07861979.1| site-specific recombinase, phage integrase family [Enterococcus faecium TX0133a01] gi|68194722|gb|EAN09203.1| Phage integrase [Enterococcus faecium DO] gi|257818905|gb|EEV46233.1| phage integrase [Enterococcus faecium 1,231,502] gi|257828182|gb|EEV54808.1| phage integrase [Enterococcus faecium 1,231,410] gi|260074639|gb|EEW62959.1| phage integrase [Enterococcus faecium C68] gi|260078459|gb|EEW66162.1| phage integrase [Enterococcus faecium TC 6] gi|289160740|gb|EFD08684.1| phage integrase [Enterococcus faecium D344SRF] gi|291595575|gb|EFF26876.1| site-specific recombinase, phage integrase family [Enterococcus faecium E1679] gi|291605230|gb|EFF34690.1| site-specific recombinase, phage integrase family [Enterococcus faecium E1162] gi|313588906|gb|EFR67751.1| site-specific recombinase, phage integrase family [Enterococcus faecium TX0133a01] gi|313591154|gb|EFR69999.1| site-specific recombinase, phage integrase family [Enterococcus faecium TX0133B] gi|313594138|gb|EFR72983.1| site-specific recombinase, phage integrase family [Enterococcus faecium TX0133A] gi|313598847|gb|EFR77692.1| site-specific recombinase, phage integrase family [Enterococcus faecium TX0133C] gi|313640352|gb|EFS04933.1| site-specific recombinase, phage integrase family [Enterococcus faecium TX0133a04] Length = 392 Score = 96.6 bits (239), Expect = 4e-18, Method: Composition-based stats. Identities = 56/372 (15%), Positives = 121/372 (32%), Gaps = 66/372 (17%) Query: 13 KERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72 K+ + G+I +YF+ R + + ++ I + K + + Sbjct: 9 KQISSTGRITWYFQAYRTTR---RGFNSKREAQLAYLEMEKQQRLKKKIVASNDKFSVVG 65 Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH---- 128 +Y +S + + E I+R GD +T + ++ + + K Sbjct: 66 EQWFQYYRSLN--EQKEITYDKREEQLKIIVRWIGDKKLSDLTPECLQELLFTLKECGVN 123 Query: 129 ------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK-----------TEGI 171 +S + + ++FK+ R+ ++ NP SV PK + Sbjct: 124 GTNVGYAKNSLQSLIQVLNMIFKYCQRKNLISENPMKSVRMPKYQLTVTDLKEAINNIED 183 Query: 172 RPWTKEDMQQFKSFWSEG--SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI-------- 221 + T ++++ F ++ + F L Y+G R S++ + Sbjct: 184 KFLTVDELRTFLNYGIVHEELPMSVLFHVLFYTGCRVSEALALQPGDIDFKRNEILFYKQ 243 Query: 222 ---------FSIKTQKT-----GTIITVELPDGFMKLLAMT--------PIGKETFFI-- 257 F I+T KT ++T + + +L+ I +ET+ Sbjct: 244 TAVKGKSKDFRIETTKTVSSARRVLVTPLVMEKLQQLIKALGEMRQHYRFIIEETYLFVY 303 Query: 258 ---NNDKQKMNATQFSIWFKAKATKAGVNKSAHG--VRKFSATISADAGATAHELMATYG 312 + + K ++G+NK H R A++ A+ + L G Sbjct: 304 LDSSKRGVPYRREYVNDHVKRCVNRSGINKPFHTHLARHTMASLVAEH-CSWEVLKDRLG 362 Query: 313 WKTVDQAETYTK 324 ++ Y Sbjct: 363 HTDQTTSKIYRH 374 >gi|293374058|ref|ZP_06620397.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] gi|292631019|gb|EFF49658.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] Length = 418 Score = 96.6 bits (239), Expect = 4e-18, Method: Composition-based stats. Identities = 36/226 (15%), Positives = 74/226 (32%), Gaps = 11/226 (4%) Query: 111 YRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170 +R+ + G + + ++A + + + K A Y+ I+ V+ + + Sbjct: 183 FRQFIMNAPQGGTKRGTISQNTASTYFSIFKAGLKQAFIDGYLTIDIAAKVKGIQERESR 242 Query: 171 IRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ----NNIFSIKT 226 T E++ + + R A L +G+R D + ++ + Sbjct: 243 REYLTIEELNRLAQTPCDPLLKRAALFSAL-TGIRHCDIQKLKWSEVEQFNGGYRLNFTQ 301 Query: 227 QKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-- 284 QKT + + + + L G+ F K AG++K Sbjct: 302 QKTKGVEYMPISEQAYNLCGEQKEGELLVFAGLPDPSWINRP----VKKWVEAAGISKHI 357 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 + H R AT+ G + + G V + Y K D + Sbjct: 358 TFHCFRHSYATLQLAGGTDIYTVSKMLGHTNVRTTQVYAKVVDEKK 403 >gi|297527277|ref|YP_003669301.1| integrase family protein [Staphylothermus hellenicus DSM 12710] gi|297256193|gb|ADI32402.1| integrase family protein [Staphylothermus hellenicus DSM 12710] Length = 333 Score = 96.6 bits (239), Expect = 4e-18, Method: Composition-based stats. Identities = 39/269 (14%), Positives = 92/269 (34%), Gaps = 24/269 (8%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----- 126 K ++ E+ + + ++ ++ S + G+ R ++ + I R Sbjct: 20 KDILEEFIFALEAAGASEDTVRAYRSAIKDFLEFLGEKPLRNVSLRDIILWRNHRLKNGF 79 Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 K ++ T++ + R ++ +N + + R ++ I +++++ Sbjct: 80 SKAKTRDKKKWQTTLHYYSMFLNRFFNWLGLN--IRIPRIRKPPRKIHVLNDDEIRKLLK 137 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFM 242 + +L LL +GLR + V + N ++ + K V + + Sbjct: 138 SIRDPL-DKLILFILLDTGLRSKELLGIRVSDIDFENRTITVTSTKYDKERKVLVTSRTI 196 Query: 243 KLLAMTP----IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKFSAT 295 +L+ +GKE I + + K +AG+ H +R AT Sbjct: 197 ELIRSWIELKNLGKEDRLI-----PLTYSGLYKRIKRLGKRAGIPVWKIRPHILRHTFAT 251 Query: 296 ISADAGATAHELMATYGWKTVDQAETYTK 324 + G + L G + + Y Sbjct: 252 QALKKGLSLPYLQRLLGHSDIKTTQVYLH 280 >gi|300769888|ref|ZP_07079768.1| integrase [Sphingobacterium spiritivorum ATCC 33861] gi|300763339|gb|EFK60155.1| integrase [Sphingobacterium spiritivorum ATCC 33861] Length = 414 Score = 96.6 bits (239), Expect = 4e-18, Method: Composition-based stats. Identities = 54/294 (18%), Positives = 101/294 (34%), Gaps = 38/294 (12%) Query: 68 PTTLKWLISEYR------KSAHWGSLAVNSRISFESYFDQI------IRKSGDFDYRKIT 115 T + L+S ++ +S A + +++ D D RKI Sbjct: 103 AGTARMLVSIFQDHNNKIQSLIGQEYAPGTLERYKTSLKHTVDFLQTRHTIQDIDIRKID 162 Query: 116 TKHIRSG----VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171 I +RK ++A++++ + R + + ++ +P ++ + R+ E Sbjct: 163 HAFIMDYEFYLRNTRKCNNNTAVKYIKNFRKIINICIANGWLDRDPFVNYKSKIREVERS 222 Query: 172 RPWTKEDMQQFKSFWSEGSQ---PRLAFEFLLYSGLRCSDSCRAGVQHLQ-----NNIFS 223 T+E++ S + R F F ++GL D H+ Sbjct: 223 Y-LTQEEVHIIYSRTFATDRLNIVRDIFVFSCFTGLAYIDVRNLTPFHINIGIDGGKWIF 281 Query: 224 IKTQKTGTIITVELPDGFMKLLAMTP-----IGKETFFINNDKQKMNATQFSIWFKAKAT 278 QKT T + L ++++ + T QKMNA + K A Sbjct: 282 THRQKTETPSRIPLLPIALEIIRKYEDHPQCSNEGTLLPILSNQKMNA-----YLKEIAD 336 Query: 279 KAGVNK--SAHGVRKFSAT-ISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 G+ K + H R AT I+ G + G K + + Y K D+ Sbjct: 337 ICGIRKELTFHIARHTFATTITLSNGVPIESVSKMLGHKNLRTTQHYAKILDQK 390 >gi|163795284|ref|ZP_02189251.1| probable site-specific integrase/recombinase [alpha proteobacterium BAL199] gi|159179270|gb|EDP63801.1| probable site-specific integrase/recombinase [alpha proteobacterium BAL199] Length = 335 Score = 96.6 bits (239), Expect = 4e-18, Method: Composition-based stats. Identities = 49/303 (16%), Positives = 105/303 (34%), Gaps = 24/303 (7%) Query: 36 PYPHESTFIPAYMSALTGSTPKRE------YINSPRKKPTTLKWLISEYRKSAHWGSLAV 89 P TF + L +RE N +LK L++ Y S Sbjct: 20 HAPISRTFANRADAQLWARGIEREMDLGTFRTNDGVPADISLKELLARYV-SEVTPRKKG 78 Query: 90 NSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR-KHTPSSAIQFLTSMRVLFKWAV 148 + + ++ ++ + + ++ H+ + R K +A L ++ + A+ Sbjct: 79 HVQEAYR-ISRLMLSDLAARNLKDLSPAHLARFRDERLKSGTEAARYDLVLIQGVINTAM 137 Query: 149 RQEY---VAINPCLSVERPKRKTEGIRPWTKEDMQQF--KSFWSEGSQPRLAFEFLLYSG 203 +E+ + NP V +PK R T ++ ++ G + +G Sbjct: 138 -REWGLDLQQNPVTRVTKPKPVRARERRLTDSELTSIVERAHGRCGGVLLPTILLAIETG 196 Query: 204 LRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK 261 +R S+ ++ ++ K G +V L + +++L P + Sbjct: 197 MRRSELLSMTWANVALSAGAVTLPDSKNGKPRSVPLTNEAIQILGDLPREADAVL----- 251 Query: 262 QKMNATQFSI-WFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320 ++A ++ W + T A + H +R + + + G E+ G +T Q Sbjct: 252 -PISANALALGWKRLMRTCAIADLRFHDLRHEAISRFFEMGLNVPEVALISGHRTPSQLF 310 Query: 321 TYT 323 YT Sbjct: 311 RYT 313 >gi|260593520|ref|ZP_05858978.1| putative integrase [Prevotella veroralis F0319] gi|260534508|gb|EEX17125.1| putative integrase [Prevotella veroralis F0319] Length = 385 Score = 96.6 bits (239), Expect = 5e-18, Method: Composition-based stats. Identities = 56/322 (17%), Positives = 123/322 (38%), Gaps = 32/322 (9%) Query: 51 LTGSTPKREYINSPRKKPTTLKWL---ISEYRKSAHWGSLAVNS----RISFES--YFDQ 101 +T K Y+ R P TL L + EY++ +L+ + + S++S +F Q Sbjct: 36 ITAEYLKERYMQQSRPMP-TLTELYQSVCEYKEELQGRTLSKATVRAFKDSYKSFVHFLQ 94 Query: 102 IIRKSGDFDYRKITTKHIRS----GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINP 157 + ++ D ++ + + ++ SS L + + + A+++ YV +P Sbjct: 95 VRDRA-DCMPTEVDKTLLEDYRLFMLRDLENKESSVGNRLRHLHQVIRKALQERYVREDP 153 Query: 158 CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP---RLAFEFLLYSGLRCSDSCRAGV 214 ++ + T T +D+Q+ ++ S RL F ++GL SD + + Sbjct: 154 FELID-IETPTYERNSLTVDDLQKLLAYRPHRSTDNHCRLIFLLGCFTGLAFSDLKKLRM 212 Query: 215 QHL-----QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF 269 + S+ KT V L ++L + G++ + ++ + F Sbjct: 213 DDVYTFGDGRRYISLCRTKTQNRSIVPLLPIAEEILTIVSDGRKEGLL--FREFPTNSHF 270 Query: 270 SIWFKAKATKAGVN----KSAHGVRKFSATIS-ADAGATAHELMATYGWKTVDQAETYTK 324 + + KAG+ ++H R AT + G + G + + E Y K Sbjct: 271 NRKIRDIIIKAGLPPHTEANSHTARHTFATTICLENGLPIETVSKMLGHRFISTTELYAK 330 Query: 325 GADRIRLGIKNSRRISSVVDSD 346 + ++ + + S + + Sbjct: 331 -VSKGKIAREMQPLMGSNITME 351 >gi|257884210|ref|ZP_05663863.1| integrase [Enterococcus faecium 1,231,501] gi|257820048|gb|EEV47196.1| integrase [Enterococcus faecium 1,231,501] Length = 380 Score = 96.6 bits (239), Expect = 5e-18, Method: Composition-based stats. Identities = 53/309 (17%), Positives = 112/309 (36%), Gaps = 40/309 (12%) Query: 50 ALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGD 108 AL + E ++KP T + + + ++ ++ + E F + ++ + GD Sbjct: 48 ALARLQSEYENNLLKKEKPKTYRDVYDLWMTEYK-RTVRGSTLLKTERIFKNHVLEELGD 106 Query: 109 FDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168 +IT I+ ++ + +A + + ++FK+AVR + NP ++ +PKR+ Sbjct: 107 IYISEITPIKIQKLMDKWANKYDTAPKMMNYTGLVFKYAVRFGIIESNPTDAIRKPKRRK 166 Query: 169 EGIRPWTKEDMQQFKSFWSE-----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ----- 218 + D +Q K F E + + F L +G+R ++ + + Sbjct: 167 KATVEEPFYDKKQLKLFLDELYNQPNLKIQAFFRLLAMTGMRKQEAGALEWRDIDFKAKT 226 Query: 219 ----------NNIFSIKTQKT-GTIITVEL----PDGFMKLLAMTPIGKETFFINNDKQK 263 N I T KT G+ + + D ++ + + I Sbjct: 227 VNIYKAVTRTANGLEIDTTKTVGSSRIISIDQGTLDKLLEWKEAVLPPSDEWLIFGHSSA 286 Query: 264 ------MNATQFSIWF------KAKATKAGVNK-SAHGVRKFSATISADAGATAHELMAT 310 M+ W K K + + + HG R A++ + GA+ E+ Sbjct: 287 KNPHDIMSLDTSRKWLLNIQDQMDKKQKKKLPRITVHGFRHTQASLLIEMGASLKEVQFR 346 Query: 311 YGWKTVDQA 319 G + + Sbjct: 347 LGHEDIQTT 355 >gi|315023286|gb|EFT36296.1| hypothetical protein RAYM_08905 [Riemerella anatipestifer RA-YM] gi|325335153|gb|ADZ11427.1| integrase/recombinase [Riemerella anatipestifer RA-GD] gi|329025335|gb|AEB71699.1| DNA breaking-rejoining enzyme [Riemerella phage RAP44] Length = 414 Score = 96.6 bits (239), Expect = 5e-18, Method: Composition-based stats. Identities = 61/350 (17%), Positives = 117/350 (33%), Gaps = 44/350 (12%) Query: 19 GKIIY-YFRKGHGRRIRLPYPHE--STFIPAYMSALTGSTPKREYINS---PRKKPTTLK 72 GK Y +FR G IR+ F A + RE + S P+ +K Sbjct: 47 GKDWYVWFRFNGGNPIRVKQGLNQIPEFEERLQEAYAMADVIRERLESGWVPQSAKVRVK 106 Query: 73 --WLISE--YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--- 125 LI + +L+ NS +F S + I + Y ++ Sbjct: 107 RINLIDAVIFGFEEKKKTLSKNSIDNFRSSVNFFIEAVKELKYHRMQVSSFERIQAKEVL 166 Query: 126 ------RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK-RKTEGIRPWTKED 178 + + + + L +R +F + +Y+ NP ++ K K E P T E+ Sbjct: 167 EHLKNEKGWSNKTYNKHLGFLRSVFHEILDADYIKSNPFRDIKNLKVLKKEANVPPTNEE 226 Query: 179 MQQFKSFWSEGSQPRLAF-EFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQ--KTGTII 233 M+ + + F + Y G+R ++ + V L N + ++ + KT Sbjct: 227 MKAISNALQDYCFGFYVFCSTIYYCGIRPAELVQMKVSMLDLGNELINLPAEITKTDADR 286 Query: 234 TVELPDGFMKLLAMTPIGKET-----FFINNDKQKMNATQF--------------SIWFK 274 V + + L + + + N + ++ +W K Sbjct: 287 VVPISENLKSLFSKFDLSNPHNYLFGTCVPNGGRHGIKNRYFEPNEFKVKEDTANKLWRK 346 Query: 275 AKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 G++K+ + ++ A AG + A +G T E Y + Sbjct: 347 LIKDGLGIDKNMYSLKHKGADDKILAGMPIETIQAIFGHSTQKMTERYAR 396 >gi|313207391|ref|YP_004046568.1| integrase family protein [Riemerella anatipestifer DSM 15868] gi|312446707|gb|ADQ83062.1| integrase family protein [Riemerella anatipestifer DSM 15868] Length = 385 Score = 96.6 bits (239), Expect = 5e-18, Method: Composition-based stats. Identities = 61/350 (17%), Positives = 117/350 (33%), Gaps = 44/350 (12%) Query: 19 GKIIY-YFRKGHGRRIRLPYPHE--STFIPAYMSALTGSTPKREYINS---PRKKPTTLK 72 GK Y +FR G IR+ F A + RE + S P+ +K Sbjct: 18 GKDWYVWFRFNGGNPIRVKQGLNQIPEFEERLQEAYAMADVIRERLESGWVPQSAKVRVK 77 Query: 73 --WLISE--YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--- 125 LI + +L+ NS +F S + I + Y ++ Sbjct: 78 RINLIDAVIFGFEEKKKTLSKNSIDNFRSSVNFFIEAVKELKYHRMQVSSFERIQAKEVL 137 Query: 126 ------RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK-RKTEGIRPWTKED 178 + + + + L +R +F + +Y+ NP ++ K K E P T E+ Sbjct: 138 EHLKNEKGWSNKTYNKHLGFLRSVFHEILDADYIKSNPFRDIKNLKVLKKEANVPPTNEE 197 Query: 179 MQQFKSFWSEGSQPRLAF-EFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQ--KTGTII 233 M+ + + F + Y G+R ++ + V L N + ++ + KT Sbjct: 198 MKAISNALQDYCFGFYVFCSTIYYCGIRPAELVQMKVSMLDLGNELINLPAEITKTDADR 257 Query: 234 TVELPDGFMKLLAMTPIGKET-----FFINNDKQKMNATQF--------------SIWFK 274 V + + L + + + N + ++ +W K Sbjct: 258 VVPISENLKSLFSKFDLSNPHNYLFGTCVPNGGRHGIKNRYFEPNEFKVKEDTANKLWRK 317 Query: 275 AKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 G++K+ + ++ A AG + A +G T E Y + Sbjct: 318 LIKDGLGIDKNMYSLKHKGADDKILAGMPIETIQAIFGHSTQKMTERYAR 367 >gi|150402206|ref|YP_001329500.1| phage integrase family protein [Methanococcus maripaludis C7] gi|150033236|gb|ABR65349.1| phage integrase family protein [Methanococcus maripaludis C7] Length = 282 Score = 96.6 bits (239), Expect = 5e-18, Method: Composition-based stats. Identities = 35/255 (13%), Positives = 82/255 (32%), Gaps = 17/255 (6%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLF 144 L+ ++ S++ +K + +R + + + K T +S + L ++ + Sbjct: 14 TGLSKSTINSYKYGLRTF-QKYANKRWRDVMVNDVILFYTNHKATKNSKMSVLGTVSRFY 72 Query: 145 KWAVRQEYVAINPCLS-VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSG 203 W + ++Y+ NP ++ +R+ + T S + F+L +G Sbjct: 73 DWGIEEKYLLDNPVKKFLKTLRREKKERNYLTTSQANYLLSNIKRYDY-YVITMFILKTG 131 Query: 204 LRCSDSCRAGVQHLQ-NNIFSIKTQKTGTI-ITVELPDGFMKLLAMTPIGKET------- 254 +R S+ VQ + ++ + G V L + Sbjct: 132 VRISELVNLKVQDVDLDSKIAFIGSGKGKKDRYVFFDRDLAFHLREYIKERSYRDPKCDN 191 Query: 255 FFINNDKQKMNATQFSIWFKAKATKAG----VNKSAHGVRKFSATISADAGATAHELMAT 310 F+ + + + +K + + + H +R AT + G L Sbjct: 192 LFLGVYRGHFSQRSLT-LYKEYINEVAPNIHIRITPHILRHTFATSMLERGIDLKSLSLI 250 Query: 311 YGWKTVDQAETYTKG 325 G + + Y Sbjct: 251 LGHEDLSTTSIYLHK 265 >gi|121997992|ref|YP_001002779.1| tyrosine recombinase XerC [Halorhodospira halophila SL1] gi|121589397|gb|ABM61977.1| tyrosine recombinase XerC subunit [Halorhodospira halophila SL1] Length = 304 Score = 96.6 bits (239), Expect = 5e-18, Method: Composition-based stats. Identities = 39/262 (14%), Positives = 86/262 (32%), Gaps = 22/262 (8%) Query: 85 GSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSGVESRKHTP---SSAIQFLT 138 LA +R + D G + +T +R+ V ++ + + L Sbjct: 17 RRLAEPTRRRYRQDLDAFAAFCTDRGLASWAAVTHDVVRAWVAHQRRRGLAGRTLGRQLA 76 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG----SQPRL 194 ++R +++ +R+ VA +P V P+ + +++ G ++ Sbjct: 77 ALRSFYRFLIREGAVAADPAAEVRPPQTRRRLPGTLDPDEVAGLLDGADPGDPLQARDAA 136 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGK 252 +E + SGLR S+ + L + + + K V + ++ L + Sbjct: 137 LYELIYSSGLRLSEVIGLNMMDLDRRDGLVRVLRGKGAKDRVVPVGRQALRALDAWLRHR 196 Query: 253 ET--------FFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGA 302 F+ ++ A + A GV + H +R AT ++ Sbjct: 197 PAWASAEETAIFVGRHGGRLGARTVQRRLQRLAHLRGVQRRVHPHMLRHSFATHMLESSG 256 Query: 303 TAHELMATYGWKTVDQAETYTK 324 + G + + YT Sbjct: 257 DLRAIQELLGHADISTTQVYTH 278 >gi|149199670|ref|ZP_01876702.1| Integron integrase; Phage integrase; Phage integrase N-terminal SAM-like domain [Lentisphaera araneosa HTCC2155] gi|149137187|gb|EDM25608.1| Integron integrase; Phage integrase; Phage integrase N-terminal SAM-like domain [Lentisphaera araneosa HTCC2155] Length = 424 Score = 96.6 bits (239), Expect = 5e-18, Method: Composition-based stats. Identities = 59/410 (14%), Positives = 119/410 (29%), Gaps = 100/410 (24%) Query: 7 LPPFVTKERTRHGKII-YYFRK----GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYI 61 F+ K++ + K + YY R R P+E + + YM +L G + Sbjct: 7 FKAFLLKQKGVYVKTVDYYLRWVVQYADFSRKLGRSPYEKSCLDQYMRSLFGRVEDWQIK 66 Query: 62 NSPRKKPTTLKW--------------------------------LISEYRKSAHWGSLAV 89 + W L+ E+ K+ + Sbjct: 67 QAEEAVKYYWYWRGGEESNNSDWKSEEDIKSDRLESRFNEEFDGLLVEFEKAMRLQQKSY 126 Query: 90 NSRISF----ESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFK 145 + S+ E Y + DY + H+ T + A L ++ + FK Sbjct: 127 RTIQSYVTWVERYLAHAKTHYKESDYVRDFLSHLVMRYNVAASTQNQA---LCALVLFFK 183 Query: 146 WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLR 205 + ++ + + R K+ T +++++ S + + +L + + GLR Sbjct: 184 YILKCDLGDV---SGSLRSKKDVRLPVVLTVDEVREILS--ASTGKEQLMMKLIYGGGLR 238 Query: 206 CSDSCRAGVQHLQ--NNIFSIKTQKTGTIIT----------------------------- 234 S+ R ++ L +I+ K Sbjct: 239 KSECLRLRIKDLDFSRGSLNIRDGKGNKDRQTLLSRDLKEQIDCHLNEVRKLFEIDRESE 298 Query: 235 ---VELPDGFMKLLAMTPIGKETFFI---------------NNDKQKMNATQFSIWFKAK 276 V LP+ +K F++ + + S + KA Sbjct: 299 VAGVFLPNALIKKYPNAGRKWAWFWLFPSEKLSIDPMTSQKTIRRHHNSGQMLSRFLKAT 358 Query: 277 ATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 G+ K + H +R AT + G + G + + + YT Sbjct: 359 CEDLGIKKQCTVHTLRHSFATHLLERGTDLRTIQELLGHEDISTTQIYTH 408 >gi|78357906|ref|YP_389355.1| site-specific recombinase XerD-like [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78220311|gb|ABB39660.1| Site-specific recombinase XerD-like protein [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 417 Score = 96.6 bits (239), Expect = 5e-18, Method: Composition-based stats. Identities = 53/384 (13%), Positives = 111/384 (28%), Gaps = 69/384 (17%) Query: 10 FVTKERTRHG--KIIYY---FRKGHGRRIRLPYPHESTFI----------PAYMSALTGS 54 + + +HG K YY +++ G+R+ S +A TG Sbjct: 15 YREHDTRKHGIKKDRYYTIRYQR-SGQRVEEGLGWASEGWTLDKAVATLAKLREAATTGE 73 Query: 55 TPKREYINSPRKKPT---------TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK 105 R + T +++ Y ++ + ++ Sbjct: 74 GETRLQEKRKAAEAQKALKEKKNITFATILAGYLEAGTEKKNTRVLAVQKGYGDKWLLPD 133 Query: 106 SGDFDYRKITTKH---IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVA-INPCLSV 161 G R++T H I+ + + + +A + R + WA ++E + NP + Sbjct: 134 LGPLPIRQVTAGHLEQIQKQILAAGRSKQTAAHAIDLFRAAWNWAYKRELIEGRNPVTQM 193 Query: 162 ERPKRKTEGIRPWTKEDMQQFKS-FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-- 218 ER + R ++ ++Q + ++G R + + Sbjct: 194 ERIRPDGSRERFFSAAELQSLLGWLHRKDIHTYRITLCAAHTGARLGELAHLTWDRVNLP 253 Query: 219 NNIFSIKTQKTGTIITVELPDGFMKL-------------------LAMTPIG--KETFFI 257 + + K+G +V + + TP G + F+ Sbjct: 254 DRQINFIHTKSGVPRSVPMTPELHDMFSDLLMTMSSAKTSGIPLGTNYTPAGLAGKIVFL 313 Query: 258 NNDKQKM-----------NATQFSIWFKAKA-----TKAGVNKSAHGVRKFSATISADAG 301 ++ T F A A + H +R +AT+ G Sbjct: 314 TKARKPFFKEIEGRLRTDTPTAFRSALSALKLNEGHATAKTKLTFHCLRHTAATLLLSNG 373 Query: 302 ATAHELMATYGWKTVDQAETYTKG 325 + GW T+ E Y+ Sbjct: 374 VDPVTVQNIMGWSTLKMLERYSHA 397 >gi|325981039|ref|YP_004293441.1| integrase family protein [Nitrosomonas sp. AL212] gi|325530558|gb|ADZ25279.1| integrase family protein [Nitrosomonas sp. AL212] Length = 337 Score = 96.6 bits (239), Expect = 5e-18, Method: Composition-based stats. Identities = 45/324 (13%), Positives = 102/324 (31%), Gaps = 29/324 (8%) Query: 17 RHGKIIY-YFRKGHGRRIR-LPYPHESTFIPAYMSALTGSTPKREYINSPRKKP---TTL 71 + GK + F G R+R + T + L + + + K+ Sbjct: 5 KRGKTWWISFTTPSGERVRCSAATEDKTQAQEFHDKLKAESWRVVKLGDKPKRTWDEAAY 64 Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT-- 129 KWL+ + + + + + + ++T + + +G+ K Sbjct: 65 KWLME---------TQDKKTHHDDVAKINWLQQFFRGKYLDELT-RDVIAGIGELKRKET 114 Query: 130 -PSSAIQFLTSMRVLFKWA-VRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 ++A + L +R + + A + E++ P ++ + +R + Sbjct: 115 SSATANRLLALIRSILRRAALDWEWIDKPPV--IKLYREARRRVRYLSATQATMLIQELP 172 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQKTGTIITVELPDGFMK 243 + F L +GLR S+ + + K G I V L + Sbjct: 173 QHLAD--MVTFSLATGLRRSNVTKLEWSQVDMQRNVAWIHGDQAKAGKPIHVTLNATAIA 230 Query: 244 LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGA 302 +L + + + W+K +AG+ + H +R A+ G Sbjct: 231 VLTRQIGKHPRSVFSYKGKPITQVNTKAWYK-ALKRAGIEDFRWHDLRHTWASWLTQNGV 289 Query: 303 TAHELMATYGWKTVDQAETYTKGA 326 + + W++ + Y A Sbjct: 290 PLNVIQEMGAWESAEMVRRYAHLA 313 >gi|253563451|ref|ZP_04840908.1| integrase [Bacteroides sp. 3_2_5] gi|251947227|gb|EES87509.1| integrase [Bacteroides sp. 3_2_5] Length = 420 Score = 96.6 bits (239), Expect = 5e-18, Method: Composition-based stats. Identities = 37/228 (16%), Positives = 80/228 (35%), Gaps = 10/228 (4%) Query: 110 DYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169 D + + G + + ++A + + ++ K A EY+ ++ V+ + Sbjct: 182 DIKMFLLRAPMGGNKKGTISQNTASTYFSILKAGLKQAFIDEYLTVDISAKVKGITNIEK 241 Query: 170 GIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSI- 224 T ++Q + + AF F + +GLR SD + + + ++ Sbjct: 242 PRVALTMNEVQMLVGTPCKDDVLKRAFLFSILTGLRHSDIQTLKWKQIQQTSKGTWQAVV 301 Query: 225 KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284 QKT + ++L + P E A+ S K +G+ K Sbjct: 302 IQQKTKRPDYKPVIQQALQLCGIRPDDDEALVFEGLTD---ASWISRPLKVWIEASGIKK 358 Query: 285 --SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 + H R A++ + G + + + G V + YT + + Sbjct: 359 HITFHCGRHSYASLLLENGVDIYTIKSLMGHTNVKTTQIYTHIVNEQK 406 >gi|194433928|ref|ZP_03066200.1| integrase [Shigella dysenteriae 1012] gi|194417800|gb|EDX33897.1| integrase [Shigella dysenteriae 1012] Length = 336 Score = 96.6 bits (239), Expect = 5e-18, Method: Composition-based stats. Identities = 43/276 (15%), Positives = 88/276 (31%), Gaps = 26/276 (9%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--K 127 T+ I Y+ + N+ + + + I K G +ITT+HI ++ Sbjct: 53 TMADWIERYKTILIRRKASRNTYKTRVNQLETIKEKLGGVLLTEITTRHIAEFLDLWIEG 112 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK--RKTEGIRPWTKEDMQQFKSF 185 + A + + +F+ A+ + ++ NP PK E ++ T +++ Sbjct: 113 GKNTMAGSMRSVLSDMFREAIVEGRISQNPVTPTRAPKIVVTRERLKLKTYNCIREAADQ 172 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245 LA + L +G R D + ++ I+ KTG +I + L Sbjct: 173 LPAWFP--LAMDLALVTGQRREDITNMRFSDIYDDRLHIRQIKTGMMIAIPLSLSLPVAG 230 Query: 246 AMTP--------IGKETFFINNDKQKMN------ATQFSIWFKAKATKAGV-----NKSA 286 + + + I+ +K + + F A G+ + Sbjct: 231 LRLGAVVKQCRMVSRGDYLISAGIRKNSPDGSIHPDGLTKKFVAARKLTGILFSENPPTF 290 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 H +R A G + + Y Sbjct: 291 HEIR-SLAGRLYKEICGEEFAQRLLGHTSEKTTKMY 325 >gi|238916936|ref|YP_002930453.1| integrase/recombinase XerC [Eubacterium eligens ATCC 27750] gi|238872296|gb|ACR72006.1| integrase/recombinase XerC [Eubacterium eligens ATCC 27750] Length = 354 Score = 96.6 bits (239), Expect = 5e-18, Method: Composition-based stats. Identities = 52/323 (16%), Positives = 113/323 (34%), Gaps = 55/323 (17%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISF----ESYFDQIIRKSGDF-----------DYRKIT 115 L ++Y S + ++I++ + +F+ +I F D KI Sbjct: 30 LPDFCTQYFDSLEFNKQ-PRTKIAYAMDIKGFFEFLIECIPKFSSYAMKDFKPSDLEKID 88 Query: 116 TKHIRSGVESRK----------HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK 165 I + K ++ S+A + L ++R +++ R E +++NP + V+ PK Sbjct: 89 GTDITRYLRHVKLYKKNGRDITNSESAAKRKLCALRRFYEYYCRYEIISLNPTIKVDMPK 148 Query: 166 RKTEGIRPWTKEDMQQFKSFWSEG---------------SQPRLAFEFLLYSGLRCSDSC 210 + I ++ +F G ++ +L +G+R S+ Sbjct: 149 IHEKAIIRMEPNEVAEFLDNVESGNKLTKTQLQSHEKLKTRDLALLTLMLGTGIRVSECV 208 Query: 211 RAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLL--------AMTPIGKE--TFFINN 259 + + + I+ +K G+ V D + L +TP FI+ Sbjct: 209 GLDINDVDFDNDRIRVIRKGGSESFVYFGDEVREALLNYLEERKNLTPDEGHENALFISA 268 Query: 260 DKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVD 317 K+++ + K A K + H +R T + + G K V+ Sbjct: 269 KKKRLCVRSVELLVKKYAQTVTTVKHITPHKLRSTYGTNLYQESQDIYLVADVLGHKDVN 328 Query: 318 QA-ETYTKGADRIRLGIKNSRRI 339 + Y + + + +N ++ Sbjct: 329 TTRKHYAEIVEENKRSARNIVKL 351 >gi|169633091|ref|YP_001706827.1| putative phage integrase [Acinetobacter baumannii SDF] gi|169151883|emb|CAP00727.1| conserved hypothetical protein; putative phage integrase [Acinetobacter baumannii] Length = 402 Score = 96.6 bits (239), Expect = 5e-18, Method: Composition-based stats. Identities = 56/330 (16%), Positives = 110/330 (33%), Gaps = 33/330 (10%) Query: 49 SALTGSTPKREYINS---PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI-IR 104 A+T K+ + P T EY + ++ + S +++ + Sbjct: 69 KAVTAKPIKKADASQKTLPASNAPTFAHYAQEYL--YNLSDHKQGTKKKYLSILERLWMP 126 Query: 105 KSGDFDYRKITTKHIRSGVESRK-HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER 163 D IT++ +R+ V R+ + + L +R +F+ A E + NPC ++ Sbjct: 127 LFEDMPINTITSQMLRTAVNGREWSSAKTRNDALIPLRGVFELACDDEVIDKNPCDRLKN 186 Query: 164 PKRKTEGIRPWTKEDMQQF-----KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ 218 K + + P+ + + + + + S+ F ++G R S+ Q + Sbjct: 187 QKTQEDEPDPFNEMEKEIILNWLKEKYISDYPTVYWYFVVAFWTGCRPSEIIALTWQDVD 246 Query: 219 --NNIFSIK----------TQKTGTIITVELPDGFMKL-----LAMTPIGKETFFINNDK 261 N I T KT V+L D + L + F + Sbjct: 247 FLNKQIYINKGRVNGVQQETTKTNKARFVDLNDFAFEAFQQLRLLTYLKYEHVFICDETG 306 Query: 262 QKMNA-TQFSIWFKAKATKAGVNKS-AHGVRKFSATISADAGATAHELMATYGWKTVDQA 319 ++ S F A G+ A+ R AT+ G + + G V Sbjct: 307 KEFTTQKSLSEKFVASLKANGIRYRPAYNTRHTYATVCLMNGLNPVYVASQLGHSLVMLM 366 Query: 320 ETYTK--GADRIRLGIKNSRRISSVVDSDD 347 Y K +D+ + I + +V + Sbjct: 367 MRYAKWINSDKNKEEIAKISNSAKIVPNKK 396 >gi|227496708|ref|ZP_03926983.1| integrase [Actinomyces urogenitalis DSM 15434] gi|226833805|gb|EEH66188.1| integrase [Actinomyces urogenitalis DSM 15434] Length = 415 Score = 96.6 bits (239), Expect = 5e-18, Method: Composition-based stats. Identities = 55/329 (16%), Positives = 114/329 (34%), Gaps = 34/329 (10%) Query: 40 ESTFIPAY-MSALTGSTPKREYINSPRKKPTTLKWL-ISEYRKSAHWGSLAVNSRISFES 97 TF+P Y A + E + + + + +WL + ++ + + + + S+ S Sbjct: 84 SRTFVPPYQRRAEARKKAEEERLQAVTVEQWSQQWLKRLQSGQTRNGKARSSGTITSYRS 143 Query: 98 YFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEY--VA 154 + ++ G +T K + + + + L ++R +F A+R E V Sbjct: 144 TLNAHVLPALGHVRLADVTRKDVDGLLATVADQSGAWNNVLRTVRAMFGEAIRAEVGGVE 203 Query: 155 INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGV 214 +NP + E+P R +E R E + +G L + LR + Sbjct: 204 VNPVRAPEKPVRLSEEGRTLEPEQVAALARAMPDGL--GLTVLLAAWCALRQGEVLGLQR 261 Query: 215 QHLQN------NIFSIKTQ-------------KTGTIITVELPDGFMKLLA------MTP 249 + ++ + ++ Q K + V +P + LLA Sbjct: 262 RDVKGLGKDGEAVLQVRRQWNSKTHPPTYTLPKEEKVRDVAIPPTLVPLLAEHLKGMRDK 321 Query: 250 IGKETFFINND--KQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHEL 307 G+ F + KQ ++ + + + H +R + +++GAT E Sbjct: 322 DGQAPLFRSPRWPKQPLSHQALTRAWDEARRQVVPGFRFHDLRGVGLSYFSESGATVEET 381 Query: 308 MATYGWKTVDQAETYTKGADRIRLGIKNS 336 M G V A Y R + + + Sbjct: 382 MTRGGHSDVKAAMRYQHARMRRQQALAAA 410 >gi|168698235|ref|ZP_02730512.1| phage integrase family protein [Gemmata obscuriglobus UQM 2246] Length = 374 Score = 96.6 bits (239), Expect = 5e-18, Method: Composition-based stats. Identities = 53/346 (15%), Positives = 110/346 (31%), Gaps = 27/346 (7%) Query: 17 RHGKIIYYFRKG------HGRRIRL-PYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69 R K+ Y G G + RL P++ A R+ + + Sbjct: 3 RPAKVWYRSDIGWWMITLGGEKTRLVQGPNDDHHR---HLAEEKYIELRKLRRTAPEAVG 59 Query: 70 TL-KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH 128 + +I + + A ++ + Y G+ R++ HI ++ + Sbjct: 60 SRTADVIEAFLHHSRVH-FAADTHRLNKYYCQLFAEACGEVLARELKPYHIDRWIDPKVE 118 Query: 129 ----TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 ++ + +F WA ++ + NP ++ PK + R T + + Sbjct: 119 AEEWGETTVYNARKAAGRVFSWAAERKLLPENPIDGMKNPKPRPRQ-RAITDVEFWKM-- 175 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT----GTIITVELPDG 240 + G + L +G R + +Q + + + KT G + L Sbjct: 176 HENAGGPLKDLLLALYLTGARPKEVRELTWDQVQEDRWVLIEHKTGKKSGKPRVIYLTGP 235 Query: 241 FMKLL-AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATIS 297 ++ + G F+N + + K + K A+ R T + Sbjct: 236 LKEITGRLRGNGHTHVFLNTEGLPWTMNALRLQVWRIKRKLELPKDVCAYLCRHGFGTRA 295 Query: 298 ADAGATAHELMATYGWKTVDQ-AETYTKGADRIRLGIKNSRRISSV 342 AG L G + + ++ Y AD+ + RI+ V Sbjct: 296 ILAGVDGQTLAELMGHTSQEMISKVYVHLADQHQHLKDAVNRINGV 341 >gi|152990189|ref|YP_001355911.1| phage integrase family site specific recombinase [Nitratiruptor sp. SB155-2] gi|151422050|dbj|BAF69554.1| site-specific recombinase, phage integrase family [Nitratiruptor sp. SB155-2] Length = 378 Score = 96.6 bits (239), Expect = 5e-18, Method: Composition-based stats. Identities = 47/287 (16%), Positives = 98/287 (34%), Gaps = 26/287 (9%) Query: 57 KREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITT 116 + E ++ P ++ +Y + + D++I D D IT Sbjct: 67 ELEAELKAKETPKAFRYYAEKYLLLKE----QLKTYDELSKQVDKLIEVF-DKDIDAITR 121 Query: 117 KHIRSG--VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174 I+ R TP + ++L + +F A+ + NP ++ P + P+ Sbjct: 122 GEIKEWSAFALRDKTPKTVRKYLNLLGSIFDTAIEYGVIKDNPARKIKLPVHIEKHKEPF 181 Query: 175 TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK------ 228 + ++++ S S + LA F ++G+R + + +I K Sbjct: 182 SSDEVELLLSTASGWFRNYLAIAF--FTGMRPGEIIALTKDDVNLKRRTINVSKARRYGK 239 Query: 229 --TGTIIT----VELPDGFMKLLAMTPIGKETFFINNDK--QKMNATQFSIWFKAKATKA 280 T + V + D + L + N K Q +A + ++K ++ Sbjct: 240 TTTPKTVYSIREVPILDALVPYLMDQIENSSYYLFTNSKGDQFWDAKKLHPYWKEVIEQS 299 Query: 281 GVNKS-AHGVRKFSATISADAG-ATAHELMATYGWK-TVDQAETYTK 324 G+ + R T +G + EL G K + + Y + Sbjct: 300 GLMYREMYATRHTFITAMLKSGYVSVMELAQIVGHKNSTEIMNNYAR 346 >gi|146301334|ref|YP_001195925.1| phage integrase family protein [Flavobacterium johnsoniae UW101] gi|146155752|gb|ABQ06606.1| Bacteroides conjugative transposon integrase-like protein [Flavobacterium johnsoniae UW101] Length = 419 Score = 96.6 bits (239), Expect = 5e-18, Method: Composition-based stats. Identities = 48/296 (16%), Positives = 102/296 (34%), Gaps = 27/296 (9%) Query: 41 STFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD 100 FI Y++A+ + + S + + L +E+ KS GSL + S + Sbjct: 128 EDFIK-YVAAVAA----KRHNRSSKSIRINWERL-AEFLKSFSNGSLNFSQIDSRMA--- 178 Query: 101 QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160 D++ + G + + ++A + + K A Y+ ++ Sbjct: 179 --------EDFKLFLLGAPQGGGKKGTISRNTAGTYFAIFKAAVKQAFIDGYLTVDLSSK 230 Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--Q 218 ++ + T E++ S E + A F +GLR SD + + + + Sbjct: 231 IKGIPEEESRREYLTIEELNALASTDCEKDVLKRAALFSALTGLRHSDIQKLRWKEIAVE 290 Query: 219 NNI--FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAK 276 + + +KT + + + ++L + + F + + W Sbjct: 291 DGMAKLHFTQKKTKGVEYMPISQQALQLCGEPRLPGQLVFEDLPDPSWISRPLKKWV--- 347 Query: 277 ATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 AG+ K + H R AT+ +G + + G V + Y K D + Sbjct: 348 -LSAGIKKNITFHCFRHTFATLQLSSGTDIYTVSKMLGHTNVKTTQIYAKVVDEKK 402 >gi|313157598|gb|EFR57014.1| site-specific recombinase, phage integrase family [Alistipes sp. HGB5] Length = 405 Score = 96.6 bits (239), Expect = 5e-18, Method: Composition-based stats. Identities = 49/288 (17%), Positives = 97/288 (33%), Gaps = 33/288 (11%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS-- 132 ++Y + + + ++ + D + + G+ + T Sbjct: 134 CNKYHRLLRY--MTEYTKQQYRK---------DDLPL-DMVSYEYIDGLNTFMQTAHQCR 181 Query: 133 ---AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 A+ L ++ +A+R E++ NP + KT P TKE++ S Sbjct: 182 NNGAVNLLCCLKNFILFAIRNEWIEKNPFQYYKMKIDKTNVKVPLTKEELDILISKEMPN 241 Query: 190 SQ---PRLAFEFLLYSGLRCSDSCRAGVQHLQNN-----IFSIKTQKTGTIITVELPDGF 241 + R F F +GL +D+ +H+ + +KT I V L Sbjct: 242 ERLECIRDVFCFCALTGLAFTDADNLQKRHITTDDSGTTWIHKPREKTSVISRVPLLPYP 301 Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISAD 299 +K+L E + + + + K T ++K + H R AT++ + Sbjct: 302 LKILQKYEHNPELQLKGKLLPIPSNQKMNSYLKEIGTICNIHKNLTTHCARHTFATLAIE 361 Query: 300 AGATAHELMATYGWKTVDQAETYTK--GADRIRLGIKNSRRISSVVDS 345 G + G + Y K A+ R +RI V+ + Sbjct: 362 YGMPIDIIAKILGHTNTNMTRHYAKISEANISR----EMQRIGKVLTA 405 >gi|319788866|ref|YP_004090181.1| integrase family protein [Ruminococcus albus 7] gi|315450733|gb|ADU24295.1| integrase family protein [Ruminococcus albus 7] Length = 361 Score = 96.6 bits (239), Expect = 5e-18, Method: Composition-based stats. Identities = 43/268 (16%), Positives = 95/268 (35%), Gaps = 31/268 (11%) Query: 88 AVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQ---FLTSMRVL 143 ++ ++ ++ I+ + G I T+ I ++ + SA +T M+ + Sbjct: 79 KDSTASNYRMKIERHILPEFGAKVCASIKTRMISEFIQKKLSQGLSARYVGDIITVMKAM 138 Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR-LAFEFLLYS 202 +++A EY N V PK+ I T E+ ++ + + LA L++ Sbjct: 139 YRYAA-NEYNITNVIEGVVMPKKAKPEINIMTAEEKRKLVYYINTNHNETTLAVALSLFT 197 Query: 203 GLRCSDSCRAGVQHLQNN--IFSIK-----------TQKTGTIIT----------VELPD 239 G+R + C Q + + ++ KT IIT + +P+ Sbjct: 198 GMRIGEVCALSWQDIDIEKRVLYVRHTIQRIQNYDGKSKTKIIITEPKSQSSKREIPIPE 257 Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISA 298 + +L +++ + + FK+ + G+ + H +R A+ + Sbjct: 258 CLVPMLTELKRKPDSYVLTGTGTPIEPRTLQYRFKSILNRLGLGSFTYHSLRHKMASEAI 317 Query: 299 DAGATAHELMATYGWKTVDQA-ETYTKG 325 + G L G + + Y Sbjct: 318 EIGFDVKTLSEILGHSSSQITLDRYVHS 345 >gi|327537427|gb|EGF24153.1| Integrase, integron-type [Rhodopirellula baltica WH47] Length = 408 Score = 96.6 bits (239), Expect = 5e-18, Method: Composition-based stats. Identities = 46/311 (14%), Positives = 92/311 (29%), Gaps = 62/311 (19%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH---- 128 I E+R+S LA+ + S+ + G H Sbjct: 77 DAIQEFRRSMRRAGLAIATERSYVKKLKAFMADRGLNCLADFDRIHASDVEAHLTDLAVD 136 Query: 129 ---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 +PS+ Q S+ F+ +++E + R + + + E++ Q Sbjct: 137 GNVSPSTQNQAFHSLLKFFELVLKREMGK----IEAIRANKNSMAPTVMSPEEVGQVFEG 192 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMK 243 + + L G+R S++ R V+ + N I+ K V +PD ++ Sbjct: 193 LE--GVYLVIAKLLYGCGMRISEAHRLRVKDIDFANKQIEIRQSKGNKSRLVPMPDDLIE 250 Query: 244 LLAMTPIGKETFFINN-------------------------------------------- 259 L +E ++ Sbjct: 251 PLRRFVKTREALHEHDLANGTASVYLPYALDRKYPSAHRELKWQYLFASHRLSRDPRTGR 310 Query: 260 -DKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTV 316 + ++A+ F + +AG+ + ++H R AT G ++ G V Sbjct: 311 IHRHHLHASTFPTHLRRAVEQAGILKHVTSHTFRHCFATHLLWQGTDIRQIQQLLGHSDV 370 Query: 317 DQAETYTKGAD 327 E YT + Sbjct: 371 KTTEIYTHVRN 381 >gi|326789971|ref|YP_004307792.1| integrase family protein [Clostridium lentocellum DSM 5427] gi|326540735|gb|ADZ82594.1| integrase family protein [Clostridium lentocellum DSM 5427] Length = 407 Score = 96.6 bits (239), Expect = 5e-18, Method: Composition-based stats. Identities = 54/308 (17%), Positives = 90/308 (29%), Gaps = 54/308 (17%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGVESRK 127 TL + L S +E + I+ G I T HI+S + Sbjct: 82 TLNQWFYTWLFEFRINELKDTSFERYEGIYRNYIKGSALGKRKLVDIRTAHIQSYYNALA 141 Query: 128 HTPSSAIQFL---TSMRVLFKWAVRQEYVAINPCLSVERPK-------RKTEGIRPWTKE 177 + +++ AV+Q Y+ N C V PK K I +T E Sbjct: 142 EQGKTTNTIKVLNKTLKTCLNDAVKQGYIVRNYCSLVTMPKCEGAAGTDKDNDITFFTPE 201 Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSI--------KTQ 227 + + F + + R+ F L SGLR + ++ NN S+ K Sbjct: 202 EQKTFIGSLEKN-KNRMLFILALGSGLRLGELMALKWDNVDMVNNTLSVTHAISRLSKVG 260 Query: 228 KTGTIIT---------------VELP----DGFMKLLAMTPI----------GKETFFIN 258 K G+ + LP K A F Sbjct: 261 KDGSRTWSVLEHDPKTKSSTRIIPLPTKIIKELKKHKAEQDKLILKYGDLYQKNNLVFCT 320 Query: 259 NDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVD 317 + ++ + + AG+ +K H +R AT + + + G + Sbjct: 321 DLGGYLDTRNLTRSYARALANAGIEHKKFHSMRHTYATRLFENDVPIKTVQSLMGHNDIT 380 Query: 318 QAE-TYTK 324 YT Sbjct: 381 TTMNIYTH 388 >gi|94272229|ref|ZP_01292090.1| Phage integrase [delta proteobacterium MLMS-1] gi|93450194|gb|EAT01495.1| Phage integrase [delta proteobacterium MLMS-1] Length = 398 Score = 96.6 bits (239), Expect = 5e-18, Method: Composition-based stats. Identities = 45/285 (15%), Positives = 96/285 (33%), Gaps = 24/285 (8%) Query: 70 TLKWLISE-YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES-RK 127 T L++E + + ++R E + G+ I + I ++ + Sbjct: 91 TFAQLLAEIWERELRHKKSGKDTRRLLEKDC---LPTWGNLPVETIRRREIVLLLDEIEQ 147 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF-KSFW 186 P + ++ LF +A + + +PC + + K R T ++++ ++ Sbjct: 148 RAPIVRNRVHGALTRLFNFAAERGIIDDSPCTRIRKLAEKGRK-RVLTDDEIKTLWEALD 206 Query: 187 SEGSQP-------RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVEL 237 E QP +LA +L +G R + + + ++I K G V L Sbjct: 207 PEQVQPMDSYRLTKLALRLILLTGQRPGEVAGMTWDEIDGDTWNIPASRMKNGDPNDVPL 266 Query: 238 PD-GFMKLLAMTPIGKETFFI---NNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRK 291 + + ++ F+ + M+A S G + + H +R+ Sbjct: 267 TGLALETIEQARQLSGDSPFVFRSTHRDGAMSAHALSRAIATHWQAIGFKERFTPHDLRR 326 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTK--GADRIRLGIK 334 T A+ G G + Y + A RL ++ Sbjct: 327 TMRTRLAELGVDDVVAERCLGHRLQGVLAVYNRHDYAMEKRLALE 371 >gi|116049139|ref|YP_792059.1| putative bacteriophage integrase [Pseudomonas aeruginosa UCBPP-PA14] gi|37596415|gb|AAQ94690.1| PA0728 [Pseudomonas phage Pf1] gi|115584360|gb|ABJ10375.1| putative bacteriophage integrase [Pseudomonas aeruginosa UCBPP-PA14] Length = 338 Score = 96.6 bits (239), Expect = 5e-18, Method: Composition-based stats. Identities = 46/313 (14%), Positives = 100/313 (31%), Gaps = 18/313 (5%) Query: 19 GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEY 78 G+ + G+R R + + + + ++ N ++ L LI + Sbjct: 9 GRWLADVEPIKGKRFRKRF-KTKGEAQRFEAMVRTKHARQREWNPVQQDKRLLSELIERW 67 Query: 79 RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQ 135 ++ S ++ I + GD ++ TT + + + P S Sbjct: 68 Y---ELHGHSITSGRRRKNLLLLIASRLGDPVGQRFTTADLVAFRKRELEEGALPRSINV 124 Query: 136 FLTSMRVLFKWAVRQEYVA-INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ-PR 193 + ++ +F R + NP ++ K + + +K+ + S + S P Sbjct: 125 RYSYLKTVFTELRRLGDIDYPNPLDRLKPLKPQQSVVSFLSKDQVAVLVSALRDYSTFPH 184 Query: 194 LAF--EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIG 251 LA E L +G R S++ + +++ K+ + +V + L G Sbjct: 185 LALISEVCLATGARWSEAQGLTLPMVRDGSVVFSNTKSKRVRSVPISTDLQARLEKYFAG 244 Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATY 311 + F F+ K + H +R A+ G L Sbjct: 245 RNRF-------PSCREAFARMVKRCGIVLPRGQCTHVLRHTFASHFMMNGGNILALKEIL 297 Query: 312 GWKTVDQAETYTK 324 G +++ Y Sbjct: 298 GHSSLNMTMRYAH 310 >gi|119356400|ref|YP_911044.1| tyrosine recombinase XerC subunit [Chlorobium phaeobacteroides DSM 266] gi|119353749|gb|ABL64620.1| tyrosine recombinase XerC subunit [Chlorobium phaeobacteroides DSM 266] Length = 328 Score = 96.6 bits (239), Expect = 5e-18, Method: Composition-based stats. Identities = 42/287 (14%), Positives = 88/287 (30%), Gaps = 42/287 (14%) Query: 78 YRKSAHWGSLAVNSRISFESYFDQI---------IRKSGDFDYRKITTKHIRSGVES--- 125 Y K++ +++ ++ ++ + DQ ++ FD ++T +R + Sbjct: 27 YLKTS--KNVSRHTITAYRNDLDQFFSFMQRHLELQHMSLFDPEQVTVASVRLFMGDLLQ 84 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 R P S + L S++ +++ + + V P+ T++ ++ Sbjct: 85 RGLQPKSIARKLASVKSFYRYLQETGVIKSSVLSLVSTPRYPRHVPGFLTEQQTEKIFEQ 144 Query: 186 WSEGS----------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIIT 234 G + E L GLR S+ + +K T K Sbjct: 145 EDSGLFGSDDTFEFHRDISVLEMLYGCGLRISELIDLCPDDINFLQGYVKITGKGQKQRI 204 Query: 235 VELPDGFMKLLAMTPIGKE---------------TFFINNDKQKMNATQFSIWFKAK--A 277 V L + + + F+ +K+ K + Sbjct: 205 VPLGTQAAEAVRKYFEVRRNFFRINKLMDEKELNHVFVTKRGKKLYPMLVQRITKKYLMS 264 Query: 278 TKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 K+ H +R AT + GA + G ++ E YT Sbjct: 265 VTEQKEKNPHLLRHTFATHLLNNGADLKSVSEMLGHSSLATTEIYTH 311 >gi|317484015|ref|ZP_07942950.1| phage integrase [Bilophila wadsworthia 3_1_6] gi|316924742|gb|EFV45893.1| phage integrase [Bilophila wadsworthia 3_1_6] Length = 311 Score = 96.6 bits (239), Expect = 5e-18, Method: Composition-based stats. Identities = 39/239 (16%), Positives = 76/239 (31%), Gaps = 23/239 (9%) Query: 111 YRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170 + + ++ PSS ++R F+ V +NP ++R + +G Sbjct: 62 LKAWDIDAYLRHLTNKGLKPSSRNTAAATLRSFFRHLVDSGVCTVNPAAFLKRKRNDGKG 121 Query: 171 I------RPWTKEDMQQ-FKSFWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHL---Q 218 ++++++ F G+ R + F L +GLR ++ ++ Q Sbjct: 122 SLPGHLSHSLGRDELERLFAGMEEVGAPFRDIVLFRVLFMTGLRAEEAVSLKWMNVINWQ 181 Query: 219 NNIFSIKTQKTGTIITVELPDGFMKLL-----AMTPIGKETFF--INNDKQKMNATQFSI 271 + K V LP L +P + F + + + ++ Sbjct: 182 GRWYLDVLGKGSKARRVYLPQKAQAALEELRRHTSPRPEYPIFENLRHRGRPISRHGLYA 241 Query: 272 WFKAK---ATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 K G + S H R T A GA + A G + Y + A Sbjct: 242 LVKKWSSLVISRG-DVSPHWFRHSCFTQLASRGARLESIQALAGHANIQTTMHYNEAAQ 299 >gi|282848850|ref|ZP_06258240.1| site-specific recombinase, phage integrase family [Veillonella parvula ATCC 17745] gi|282581355|gb|EFB86748.1| site-specific recombinase, phage integrase family [Veillonella parvula ATCC 17745] Length = 350 Score = 96.6 bits (239), Expect = 5e-18, Method: Composition-based stats. Identities = 45/291 (15%), Positives = 95/291 (32%), Gaps = 30/291 (10%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129 T L Y + ++ N+++ ++ + R I+ + I + + Sbjct: 67 TFIELCELYMREK--IGISENTKLVYQYIIKNLS-VLHQKRVRDISHQMIFKTLSDIEFA 123 Query: 130 PSSAIQFLTSMRVLFKWAVR-QEYVAINPCLSVERPKRKT-EGIRPWTKEDMQQFKSFWS 187 + +T ++ +F +A++ + NP ++R KT + + +T ++M + Sbjct: 124 NRTKNMHITFLKSVFNFAIKPYRIIRSNPVADIKRFTTKTYKSLTTFTIDEMDLLLKTYI 183 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ----------------NNIFSIKTQKTGT 231 + + Y+G R + + NN F +K KT Sbjct: 184 DNKKLYTLLCIARYTGARYGEILALTWLDIDLAYNTIRINKQWSRTSNNTFGVKEPKTRN 243 Query: 232 II-TVELPDGFMKLLAMTPIGKET-FFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGV 289 I T+ +P +L T N + ++I NK+ H Sbjct: 244 SIRTLPIPPILSNILLEYKSISNTERLFNINTSSTGNVNYAIRTIV------PNKTIHAF 297 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL-GIKNSRRI 339 R AT G + + G Y +D +R ++ +I Sbjct: 298 RHTYATTLLANGVDIKTVASLLGDNINTVMNVYVHYSDEMRKNAAQDVSKI 348 >gi|237744359|ref|ZP_04574840.1| phage integrase [Fusobacterium sp. 7_1] gi|229431588|gb|EEO41800.1| phage integrase [Fusobacterium sp. 7_1] Length = 353 Score = 96.6 bits (239), Expect = 5e-18, Method: Composition-based stats. Identities = 46/295 (15%), Positives = 100/295 (33%), Gaps = 29/295 (9%) Query: 71 LKWLISEYRKSAHWGSL--AVNSRISFESYFDQI--IRKSGDFDYRKITTKHIRSGVESR 126 K +++Y + L + ++ + + I D I + ++ + + Sbjct: 62 FKVAVNQYL---EFKKLRIKELTYMNMSNILNSITYFDNLLISDITAIQVSNFQNDLL-K 117 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI-RPWTKEDMQQFKSF 185 K+ SS +++LF W VR + +A NP V+R K +T+ T ++ Q Sbjct: 118 KYKGSSIRTINAYVKMLFTWCVRYKNLASNPFDMVDRLKLETKKRMDIITVDEFNQIIKQ 177 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ----------------NNIFSIKTQKT 229 + +L F+ L ++GLR ++ + + + Sbjct: 178 VN-NPDMKLMFKLLFWTGLRIGEARALKIDDIDFNNKTISVTKSYTHLSGKSIITTPKTK 236 Query: 230 GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK-AGVNKSAHG 288 G+I +++ D + + +N + N + FK K G + H Sbjct: 237 GSIRVIKIDDVLLSEIKDYIDKASYILEDNFIFRFNKASYRYNFKNATIKVLGRDLRVHD 296 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK-GADRIRLGIKNSRRISS 341 +R A+ + G + Y+ D+ IK ++ + Sbjct: 297 LRHSHASFLINNGVDILLISKRLEHSNTAMTLNVYSHLYPDKESEAIKLINKLKA 351 >gi|256826758|ref|YP_003150717.1| site-specific recombinase XerC [Cryptobacterium curtum DSM 15641] gi|256582901|gb|ACU94035.1| site-specific recombinase XerC [Cryptobacterium curtum DSM 15641] Length = 381 Score = 96.6 bits (239), Expect = 5e-18, Method: Composition-based stats. Identities = 50/285 (17%), Positives = 97/285 (34%), Gaps = 23/285 (8%) Query: 58 REYINSPRKKPTTLK-WLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKIT 115 E + TL+ + + EY S ++ + + ++ GD + Sbjct: 54 AEAGKADVTCDATLREYALEEYLPSKE-AECKQSTIDGYRCRLENHVLPYLGDIALEDLR 112 Query: 116 TKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175 T IR ++ + S + + + K A+ ++ + NPC + PK K T Sbjct: 113 TATIRRWLDRLDKSQSVKREAYKILDQVCKHAMYRDMMQSNPCDRIRVPKVKRYEPVVLT 172 Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK---------- 225 E + + EGS +A L GLR + V + ++ Sbjct: 173 AEQAIAYLDHF-EGSSIEIAVLLALGCGLRRGEIAALNVSDINWETGAVIVDDSYVTTSK 231 Query: 226 -----TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA 280 T K G TV +P+ + L + D ++ + ++ K Sbjct: 232 GTIRSTTKNGRARTVHMPESLLARLHKIAPKSGA-LLQWDGRRYRPHSITEAYERKIQSL 290 Query: 281 --GVNKSA-HGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 G+ + +R S T++ D+GA ++ G + E Y Sbjct: 291 PEGLPRIPLKNLRHTSLTLAYDSGARITDVRDRAGHSSEAVTERY 335 >gi|330470281|ref|YP_004408024.1| integrase family protein [Verrucosispora maris AB-18-032] gi|328813252|gb|AEB47424.1| integrase family protein [Verrucosispora maris AB-18-032] Length = 412 Score = 96.6 bits (239), Expect = 5e-18, Method: Composition-based stats. Identities = 69/380 (18%), Positives = 109/380 (28%), Gaps = 67/380 (17%) Query: 28 GHGRRIRLPYPHEST-----------FIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76 G R+R P A+++ + K Y++ P TT K Sbjct: 30 GMRYRVRYIAPDGKEKSQSFPDRKKREAQAFLANVQADILKGTYVD-PDAGRTTFKQYAD 88 Query: 77 EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQF 136 E+ A + RI +E + G I IR + + S Sbjct: 89 EWLA-AATTDILTRDRIEYELRL-HVYPVLGHKPMASIQPATIREWARRIQESGLSVGYR 146 Query: 137 LTS---MRVLFKWAVRQEYVAINP--CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191 + ++F AV + NP S+ RPK + PW+ + + F+ + Sbjct: 147 RVLFTDVSMIFNAAVDDRKIVSNPFSAKSIRRPKPAPTRVVPWSVDRLAAFRENLPL--R 204 Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQ---------------NNIFSIKTQKTGTIITVE 236 R+A + GLR + + + K G V Sbjct: 205 YRVAVDLGAGCGLRQGEIFAVSPGDIDPTRPVLHVTRQIKLVRGVLIFAPPKGGKSREVP 264 Query: 237 LPDGFMKLLA-------------------MTPIGKETFFINNDKQKMNATQF-SIWFKAK 276 LP L P E + N + + F S +K Sbjct: 265 LPSSVAGRLRKHAQDCQPVAVTLPWGSLTGEPRTVELYLTNPAGTALTRSMFNSGVWKPA 324 Query: 277 ATKAGVNKS----AHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTK----GAD 327 G+ H +R A++ DAG + L A G TYT D Sbjct: 325 VRATGIPDDRHNGMHVLRHTYASVLLDAGESIKALSAYLGHADPGFTLRTYTHLLPASED 384 Query: 328 RIRLGIKNSRRISSVVDSDD 347 R R I R + +D Sbjct: 385 RTRRAID--RALGEDQADND 402 >gi|315644600|ref|ZP_07897732.1| integrase family protein [Paenibacillus vortex V453] gi|315280107|gb|EFU43404.1| integrase family protein [Paenibacillus vortex V453] Length = 268 Score = 96.6 bits (239), Expect = 5e-18, Method: Composition-based stats. Identities = 39/253 (15%), Positives = 92/253 (36%), Gaps = 35/253 (13%) Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 ++ + +P++ + +R + ++Q++V N +VE PK++ + +TKE + + Sbjct: 11 MDKKGLSPNTVHKHHACIRKALDFGLKQQWVYRNVADAVELPKKERFEGKSYTKEQLNEL 70 Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-----NNIFSIKTQ---------- 227 G++ + Y GLR + R +++ NI ++T Sbjct: 71 LQKVK-GTKLEVPVYLASYLGLRREEISRLKWKYVNLEQRNINIVEVRTSAGRNVIIKGP 129 Query: 228 KTG-TIITVELPDGFMKLLAMTPIGKETF--------------FINNDKQKMNATQFSIW 272 KT + T+ + D +++L +E + ++ + + Sbjct: 130 KTKESRRTLYITDELLEVLLRHRAKQEHLKNILKNEYEDSDYVYTRDNGKPYRVNSVTEQ 189 Query: 273 FKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGAD--R 328 F + K H +R A+I G + G + + YT D Sbjct: 190 FNKFLEDNKLPKIRLHDLRHSFASILYAEGVDLKAISEILGHSDLSTTNKIYTHRFDIVH 249 Query: 329 IRLGIKNSRRISS 341 + + S+ +++ Sbjct: 250 EKTAMAMSKALNA 262 >gi|255326004|ref|ZP_05367092.1| tyrosine recombinase XerC [Rothia mucilaginosa ATCC 25296] gi|255296895|gb|EET76224.1| tyrosine recombinase XerC [Rothia mucilaginosa ATCC 25296] Length = 358 Score = 96.6 bits (239), Expect = 5e-18, Method: Composition-based stats. Identities = 58/299 (19%), Positives = 100/299 (33%), Gaps = 33/299 (11%) Query: 71 LKWLISEYRKSAHW-GSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIRSGVES- 125 + ++ + + + + + S+ S + + G I IR + S Sbjct: 56 FRPVLDRFERFLRYEKHRSEETIRSYISDLEGFFGYMARRGVRHLDSIDASPIREWLGSL 115 Query: 126 --RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF- 182 R+ S+ + +++R F WA +E V NP + PKR+ ++E M Q Sbjct: 116 HLRQAARSTVARRGSTLRTFFTWAQEEELVHANPTRGMRTPKRENHLPPVLSREQMNQLL 175 Query: 183 ----KSFWSEGSQPRL-----AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTI 232 + + RL E L SG+R S+ +Q + +++ K Sbjct: 176 TTLQERRAQDPRDARLLRLEAVVEVLYASGMRISELTGLDLQSVDRANKTVRVLGKGNKE 235 Query: 233 ITVEL-PDGFMKL-----------LAMTPIGKETFFINNDKQKMNATQFSI-WFKAKATK 279 V L L + G FI + NA Q + T Sbjct: 236 RVVPLGTPALKALNRWVSYGRPQWIPEGAQGVTALFIGPRGGRANARQIREDLTRLLRTV 295 Query: 280 AGVNKS-AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSR 337 S AH +R +AT D GA + G ++ + YT RL +R Sbjct: 296 ENTQASGAHVLRHSAATHLVDGGADIRSVQELLGHSSLATTQIYTH-VSMKRLAETYAR 353 >gi|303236540|ref|ZP_07323125.1| site-specific recombinase, phage integrase family [Prevotella disiens FB035-09AN] gi|302483288|gb|EFL46298.1| site-specific recombinase, phage integrase family [Prevotella disiens FB035-09AN] Length = 418 Score = 96.6 bits (239), Expect = 5e-18, Method: Composition-based stats. Identities = 35/208 (16%), Positives = 70/208 (33%), Gaps = 10/208 (4%) Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 + ++A + + + K A Y+ I+ ++ + + T +++ + + E Sbjct: 199 SRNTASTYFSIFKAALKQAFVDGYLTIDLSAKIKGIQEQESRREYLTLDELNKLANTPCE 258 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI----FSIKTQKTGTIITVELPDGFMKL 244 + A F +GLR D + + +KT + + + + KL Sbjct: 259 RDVLKRAALFSALTGLRHCDIQKLKWDEIAIEGNQAKLLFTQKKTKGVEYMPISEQAFKL 318 Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302 K+ F + +A KAG+ K S H R AT+ G Sbjct: 319 CGEPRQPKQLVFEGLPNPSWISRPL----RAWIEKAGIQKHLSFHCFRHTFATLQLANGT 374 Query: 303 TAHELMATYGWKTVDQAETYTKGADRIR 330 + + G V + Y K D + Sbjct: 375 DIYTVSKMLGHTNVKTTQVYAKVVDEKK 402 >gi|291531147|emb|CBK96732.1| Site-specific recombinase XerD [Eubacterium siraeum 70/3] Length = 305 Score = 96.6 bits (239), Expect = 5e-18, Method: Composition-based stats. Identities = 37/271 (13%), Positives = 82/271 (30%), Gaps = 24/271 (8%) Query: 84 WGSLAVNSRISFESYFDQIIRKSGD-FDYRKITT----------KHIRSGVESRKHTPSS 132 + + + + I + G+ + +T +H + SS Sbjct: 21 FRNNSKRTLIWYNENLSAFFNWLGENKNVDSLTVENYKSYCTFLQHDYVKRNGQPLKSSS 80 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEG 189 + +++ + + + ++ + ++ K + P +++ S + + Sbjct: 81 VNSRVRAIKAFYNYCIEEDLLPDF-SKKLKATKIRKTEKLPLDDDEIHTLVSAFGDSALE 139 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPD----GFMKL 244 + R + SGLR + + ++ F I T K V L + Sbjct: 140 ERNRCWVILMCDSGLRRGEIINLQIGNVHLARGFMIVTGKGDKQRFVPLGELSKISLATY 199 Query: 245 LAM---TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADA 300 + E F+N +K F+ + G+ AH +R AT Sbjct: 200 IRKYRNEAKESEPVFVNRFGEKCTINTVKQVFQKLKKQTGILRLHAHLLRHTFATNYLVD 259 Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRL 331 G L G + Y A+ +L Sbjct: 260 GGDLETLRLLMGHSDLQVTMMYLHLAENKKL 290 >gi|312193458|ref|YP_003991124.1| integrase [Geobacillus sp. Y4.1MC1] gi|311217910|gb|ADP76513.1| integrase family protein [Geobacillus sp. Y4.1MC1] Length = 304 Score = 96.6 bits (239), Expect = 5e-18, Method: Composition-based stats. Identities = 44/290 (15%), Positives = 90/290 (31%), Gaps = 39/290 (13%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----KHT 129 ++ EY + N+ IS+ + +Q ++ +T+ IR ++ + Sbjct: 1 MLHEYETYLQEKGFSPNTVISYLNDVNQFLKDLHLRPGDYVTSADIRKWIQQMLNPVEGK 60 Query: 130 P---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP---WTKEDMQQFK 183 P S+ + L S+R + WAV + Y+ NP ++ K E T+E+ + Sbjct: 61 PLAISTINRRLNSLRSFYAWAVERHYIEQNPMKDIQDLKTADEDHEKIMWLTEEEFEDLL 120 Query: 184 SF-------------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230 + + R L Y+GLR + + L + I+ G Sbjct: 121 HRMRKKPVQSRGVDPEEKYRRDRAVVYLLTYAGLRVEELSNLKLTDLDLEMKRIRIVGKG 180 Query: 231 TII-TVELPDGF-----------MKLLAMTP--IGKETFFINNDKQKMNATQFSIWFKAK 276 + TV + + ++ P F + K + ++ Sbjct: 181 MKVRTVPISNILLAELEDWLKFRAEMAKKKPHVAASPYVFYSQRSPKFSVRGIQRMIESY 240 Query: 277 ATKAGVNKSAHGVRKFSATISADA-GATAHELMATYGWKTVDQAETYTKG 325 + + H R A ++ G + Y K Sbjct: 241 SLP-NKKLTPHMFRHTFCKWMLKATNNDIEKVRRLAGHSNIATTSRYLKD 289 >gi|254885282|ref|ZP_05257992.1| phage integrase [Bacteroides sp. 4_3_47FAA] gi|254838075|gb|EET18384.1| phage integrase [Bacteroides sp. 4_3_47FAA] Length = 343 Score = 96.6 bits (239), Expect = 5e-18, Method: Composition-based stats. Identities = 40/292 (13%), Positives = 96/292 (32%), Gaps = 45/292 (15%) Query: 85 GSLAVNSRISFESYFDQIIR--------KSGDFDYRKITTKHIRSGVESRKHTPSSA--- 133 +++ N+++S+ F ++ + I+ + + ++ +A Sbjct: 28 RNMSHNTQMSYRDTFRMLVTFVSGKTNIAIDKLNISDISKEMVLLFLDEFVEKMRNASVS 87 Query: 134 --IQFLTSMRVLFKW--AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---- 185 Q LT+++ K+ +Y+ + C + + K R T D ++ ++ Sbjct: 88 SRNQRLTAIKSFAKFIAWKCPDYI--DWCHQIRQIPSKKITQRQITYMDREEMEALTEAP 145 Query: 186 -----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGT----- 231 G + + + +G R S+ V + + + ++ G Sbjct: 146 LSNRNHKYGKRDHIIILLMYNTGARVSEVISIHVGDIVMPKKRGMGTVTLHGKGRHERTC 205 Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK------- 284 + E D L+ + F+N + M K A + Sbjct: 206 PLWPEFWDLLKPLIEGRKPDEF-LFLNRFNKPMTRYCIYTLIKKYADYISRDYPNLRNKR 264 Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGIK 334 S H +R +AT ++G + + G ++D Y + D+ +K Sbjct: 265 PSPHTIRHTTATHLLNSGTDINTVRNWLGHASIDTTNIYAEISIDQKIKALK 316 >gi|126661716|ref|ZP_01732715.1| tyrosine type site-specific recombinase [Flavobacteria bacterium BAL38] gi|126625095|gb|EAZ95784.1| tyrosine type site-specific recombinase [Flavobacteria bacterium BAL38] Length = 408 Score = 96.6 bits (239), Expect = 5e-18, Method: Composition-based stats. Identities = 43/209 (20%), Positives = 86/209 (41%), Gaps = 17/209 (8%) Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---S 187 +S +++ +++ + +A+R E + NP ++ K K E T+E+++ ++ Sbjct: 189 NSVVKYFKNLKTICNYAIRMELIDKNP-FNIYNGKIKVEEATFLTQEELESIENKTFKID 247 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-----IFSIKTQKTGTIITVELPDGFM 242 + + F F Y+G D+ + +++ + QKT T V + + Sbjct: 248 RLERVKDIFLFSCYTGYAPVDAIKLTRKNIIQDTEKTLWIKANRQKTNTKANVPILPPVL 307 Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSAT-ISAD 299 K++ +T QKMNA + K A G+ K + + R AT ++ Sbjct: 308 KIINKYQFYGDTLLPKISNQKMNA-----YLKEIADIIGLEKKLTWYVARHTFATTVTLG 362 Query: 300 AGATAHELMATYGWKTVDQAETYTKGADR 328 G + A G T+ Q + Y K D+ Sbjct: 363 NGIRIENVSAMLGHTTIKQTQHYAKILDQ 391 >gi|53711947|ref|YP_097939.1| tyrosine type site-specific recombinase [Bacteroides fragilis YCH46] gi|52214812|dbj|BAD47405.1| tyrosine type site-specific recombinase [Bacteroides fragilis YCH46] Length = 406 Score = 96.6 bits (239), Expect = 5e-18, Method: Composition-based stats. Identities = 46/275 (16%), Positives = 100/275 (36%), Gaps = 26/275 (9%) Query: 90 NSRISFE---SYFDQIIRK---SGDFDYRKITTKHIRSGVESRKH----TPSSAIQFLTS 139 + +E Y ++ I+K D + I K +SAI L + Sbjct: 132 KTVQRYETTTRYLEEFIKKEYQLSDIALNNLEANFISKFDAFLKIEKGCAQNSAITRLKN 191 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQPRLAF 196 ++ + + A+ +++ +P + R K + T ++++ + Q R F Sbjct: 192 LKKIIRIALENDWIKKDP-FAYYRFKLEETDPEFLTMDEIKIILAKEFTIKRVEQVRDVF 250 Query: 197 EFLLYSGLRCSDSCRAGVQH-LQNN----IFSIKTQKTGTIITVELPDGFMKLLAMTPIG 251 F +++GL SD +H +++N QKT + + + + +L Sbjct: 251 IFCVFTGLAFSDVKDLSPEHLVKDNKGELWIRKNRQKTKIMCNIPVLPVAVSILEKYKNV 310 Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS-ADAGATAHELM 308 E ++ + + + K A G++K S H R AT G + + Sbjct: 311 AE--CTGKLLPVLSNQRMNSYLKEIADVCGIHKNLSTHTARHSYATSICLANGVSMENVA 368 Query: 309 ATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343 G + Y + D+ K+ ++++S + Sbjct: 369 KMLGHADTSITKHYARVLDQN--IFKDMQKVNSCL 401 >gi|293373143|ref|ZP_06619507.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] gi|292631914|gb|EFF50528.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CMC 3f] Length = 171 Score = 96.6 bits (239), Expect = 5e-18, Method: Composition-based stats. Identities = 35/145 (24%), Positives = 57/145 (39%), Gaps = 11/145 (7%) Query: 195 AFEFLLYSGLRCSDSCRAGVQHL------QNNIFSIKTQKTGTIITVELPDGFMKLLAMT 248 AF F ++GLR SD + + KT +T+ L D K + Sbjct: 13 AFLFSCFTGLRYSDMKALNWSEIHKAADGKTEYIDHIQVKTKDRVTIPLSDETKKWMPKR 72 Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHE 306 G + F N + +T + K AG+ K + H R +AT+ GA+ + Sbjct: 73 EEGIDNIFHNLT---ITSTTVEVVLKEWMEAAGITKHITYHCSRHTAATMLLTLGASIYV 129 Query: 307 LMATYGWKTVDQAETYTKGADRIRL 331 + G K++ E Y K D+ +L Sbjct: 130 VSKILGHKSIKMTEIYAKIVDKKKL 154 >gi|251791810|ref|YP_003006531.1| integrase family protein [Dickeya zeae Ech1591] gi|247540431|gb|ACT09052.1| integrase family protein [Dickeya zeae Ech1591] Length = 379 Score = 96.6 bits (239), Expect = 5e-18, Method: Composition-based stats. Identities = 40/234 (17%), Positives = 82/234 (35%), Gaps = 17/234 (7%) Query: 110 DYRKITTKHIRSGVESRKHT-------PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE 162 + ++ + R + + T ++ + +R A ++ + NP V+ Sbjct: 138 EVDQLFLEGFRHYLMHKARTKSGTPLSRNTQSAYFNKLRAALNQAEQERLLPDNPVRRVK 197 Query: 163 RPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL----Q 218 + + T+++++ + + AF F +GLR SD + L Sbjct: 198 AIQGEKNKRVYLTEDEVRALAQAECRYNVLKRAFLFSCCTGLRWSDIHKLTWAELEPFYD 257 Query: 219 NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKAT 278 + +KT + ++L D M+L+ E F + + + W A Sbjct: 258 HYRIVFTQKKTSGLQYLDLNDMAMQLMGRPGKATERIFKGLKYSAWHNMELTRW----AL 313 Query: 279 KAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 +AG+ K + H R A I + G + L G + E Y + R Sbjct: 314 QAGITKKVTFHSARHTFAVIQLNRGVDIYALSRLLGHSELRTTEIYADILESRR 367 >gi|218780651|ref|YP_002431969.1| integrase family protein [Desulfatibacillum alkenivorans AK-01] gi|218762035|gb|ACL04501.1| integrase family protein [Desulfatibacillum alkenivorans AK-01] Length = 408 Score = 96.6 bits (239), Expect = 5e-18, Method: Composition-based stats. Identities = 60/375 (16%), Positives = 103/375 (27%), Gaps = 53/375 (14%) Query: 16 TRHGKIIYY--FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYI-NSPRKKPTTLK 72 R ++ Y+ +R G++ R A + + ++ T + Sbjct: 31 KRSKRVRYWITYRLPGGKQRREAVGFSIEDARAAEGKRKAEKKENPRVLKKSPEETMTFE 90 Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT----------------T 116 L Y L R E + G + IT Sbjct: 91 DLAKWYLALPKVKGLKSFWR--IEMNLNTFNETFGKTKIKNITALDLEKFQVDGLAQGFK 148 Query: 117 KHIRSGVESRKHTPSS-------AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169 K R E +K +S Q LT R + A + V+ R K Sbjct: 149 KRTRGSKEEKKEGGASQPASQAYIDQILTVARTMINRAFDSDIVSGETVKVFRRVKNLQG 208 Query: 170 GI-----RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224 G R T ++ ++ + R Y+G+R + + I Sbjct: 209 GNANARDRVLTHDEFERIMANLPA--HARPVIATAYYTGMRSGEIFPLTWDKVDLKERVI 266 Query: 225 KTQ----KTGTIITVELPDGFMKLLAMTPIGKET--FFINNDKQKMNATQFSIWFKAKAT 278 + + K V + + ++L+ P T F+ K+ + A Sbjct: 267 RLEAADTKDKEPRVVPICNELFEVLSGLPRPIHTNNVFL---KKGEPIKKLRNSLSTAAK 323 Query: 279 KAGVNK--------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY-TKGADRI 329 KA + + H R T AG +M G T + Y T AD Sbjct: 324 KANIPFGRKVKNGFTFHDFRHTFNTNMRRAGVPESVIMKITGHSTRAMFDRYNTVDADDA 383 Query: 330 RLGIKNSRRISSVVD 344 + + VD Sbjct: 384 KNAVNIMSSFLQPVD 398 >gi|293372407|ref|ZP_06618791.1| phage integrase, N-terminal SAM domain protein [Bacteroides ovatus SD CMC 3f] gi|292632590|gb|EFF51184.1| phage integrase, N-terminal SAM domain protein [Bacteroides ovatus SD CMC 3f] Length = 330 Score = 96.3 bits (238), Expect = 5e-18, Method: Composition-based stats. Identities = 34/282 (12%), Positives = 92/282 (32%), Gaps = 21/282 (7%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHT 129 L+S + + + + + + ++++ ITT IR+ + E + + Sbjct: 55 LLSSFISAKKIEGCSEKTLAYYRNTIERLLLTL-SVAICHITTSDIRAYLSDYQEEHQSS 113 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 + F W ++Y+A +P + + K + + E ++Q + + Sbjct: 114 KVTIDNMRRIFSSFFAWLEDEDYIAKSPVRRIHKVKTDSLVKEVLSDEQLEQLRDSCT-N 172 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT----QKTGTIITVELPDG----F 241 + + L +G+R + + + + F + K V Sbjct: 173 KRDLALIDILSSTGIRVGELVKLNREDID---FHERQCVVFGKGNKERVVYFNARTKLHL 229 Query: 242 MKLLAMTPIGKETFFINNDKQK--MNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISA 298 + L F++ + + + + + K H R+ AT++ Sbjct: 230 QQYLDERTDDNPALFVSLHSPHTRLTISGVEVRIRKLGKSLSMPKVHPHKFRRTLATMAI 289 Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340 D G ++ G +D Y ++ + + + + + Sbjct: 290 DKGMPIEQVQRLLGHVRIDTTLHYA-IVNQNNVKLAHKKYLG 330 >gi|257062249|ref|YP_003142307.1| integrase family protein [Cyanothece sp. PCC 8802] gi|256592509|gb|ACV03359.1| integrase family protein [Cyanothece sp. PCC 8802] Length = 316 Score = 96.3 bits (238), Expect = 5e-18, Method: Composition-based stats. Identities = 41/251 (16%), Positives = 87/251 (34%), Gaps = 25/251 (9%) Query: 109 FDYRKITTKHIRSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAI-NPCLSVERPK 165 D+ K+ H + K ++ + L ++R + + A+R + + + +V+ P Sbjct: 62 LDWAKLRYHHTATIRRELKQRYSATTTNKMLCALRRVLEEALRLDLMEAADYAKAVDLPS 121 Query: 166 RKTEGI---RPWTKEDMQQFKSFWS-----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHL 217 K + R T +++ S G + L +GLR ++ V+ Sbjct: 122 VKGKKRLRGRALTALEIEGLMSVCLKDSSVLGVRDLALMGILRGTGLRRAELVALEVKDF 181 Query: 218 --QNNIFSIKTQKTGTIITVELPDGF----MKLLAMTPIGKETFFI------NNDKQKMN 265 + ++ K TV LP+ L + +++ +N Sbjct: 182 TSDGGVLEVRGGKGDKDRTVYLPESVIGLVEDWLEVRGAFSGALLCPIRKGGRVEQRHLN 241 Query: 266 ATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY-T 323 K +A +AG+ S H R+ + DAG + G + + Y Sbjct: 242 PDAVLKIVKKRALEAGIESFSPHDFRRTFCSDLLDAGVDLVTVQKLAGHASPETTAKYDR 301 Query: 324 KGADRIRLGIK 334 +G + R ++ Sbjct: 302 RGEETKRRAVQ 312 >gi|301309845|ref|ZP_07215784.1| site-specific recombinase, phage integrase family [Bacteroides sp. 20_3] gi|300831419|gb|EFK62050.1| site-specific recombinase, phage integrase family [Bacteroides sp. 20_3] Length = 311 Score = 96.3 bits (238), Expect = 6e-18, Method: Composition-based stats. Identities = 47/284 (16%), Positives = 102/284 (35%), Gaps = 36/284 (12%) Query: 90 NSRISFESYFDQIIRKSG--DFDYRKITTKH---IRSGVESRKHTPSSAIQFLTSMRVLF 144 ++ S++ + G Y I +S + + + ++ ++ +R ++ Sbjct: 25 STAKSYQDALNSFKCFCGMEAIPYAYINRNRLLCYQSWLLDKGRSLNTVSTYMRRIRHIY 84 Query: 145 KWAVRQEYVAINP------CLSVERPKRKTEGIRPWTKEDMQQ-FKSFWSEGSQPRLAFE 197 AV P VE ++K +E +++ F + + S R+ Sbjct: 85 NLAVEANEAPFVPNLFKDVFTGVESKRKK-----ALPREMLERMFNAELEDQSLRRVQLT 139 Query: 198 FLL---YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG----FMKLLAMTPI 250 L +SG+ D +++++ I QK+G++I +E+P G +L A T Sbjct: 140 VRLMFAFSGIAFVDLAHLKWENIRDGILQYHRQKSGSLIQLEIPSGALRLLEELSACTAK 199 Query: 251 GKETFFINNDKQK----------MNATQFSIWFKAKATKAG--VNKSAHGVRKFSATISA 298 F ++ ++F+ K A G + +++ +R A+ Sbjct: 200 ESLYLFPFLSGRRTGEAAYKEYNRTLSRFNREMKLLARSTGVTLPVTSYTIRHSFASFLK 259 Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342 + + + G K++ + Y K RL N SV Sbjct: 260 EQDVSIEVISELLGHKSIKTTQIYLKSFSLERLSTVNRNCFESV 303 >gi|291544270|emb|CBL17379.1| Site-specific recombinase XerD [Ruminococcus sp. 18P13] Length = 397 Score = 96.3 bits (238), Expect = 6e-18, Method: Composition-based stats. Identities = 46/299 (15%), Positives = 97/299 (32%), Gaps = 49/299 (16%) Query: 71 LKWL--ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG----VE 124 L WL I + + +G+ ++ + R+I KHI+ + Sbjct: 83 LDWLEMIKKNVEETTYGAYSMGIK---SKIIPYFEEHHPGLLLREIKPKHIQDYYTYELT 139 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 R + ++ I ++R + A + + NP +ERPK++ + ++++ + Sbjct: 140 VRGVSANTVIHRHANIRKALQHAFKLGLIDTNPADRIERPKKEKFVGSAYEEDELNRLFE 199 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-----------------NNIFSI--- 224 G L + GLR S++ + + I Sbjct: 200 VVK-GDPIELGVILGAFYGLRRSEAVGLKWDAIDFKKKTITIRHTVTQATIDGKSKIIQK 258 Query: 225 -KTQKTGTIITVELPDGFMKLLAMTPIGKE----------------TFFINNDKQKMNAT 267 +T+ + ++ L F +LL +E ++N + + Sbjct: 259 DRTKTKASYRSLPLVPPFEELLYRLKAEQELNRKLCGRSYCRQYTDYIYVNEIGELVKPG 318 Query: 268 QFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTK 324 + F K G+ K H +R A++ G + E+ G + YT Sbjct: 319 YITQHFPLVLEKNGMRKIRFHDLRHSCASLLYANGVSLKEIQEWLGHSDISTTSNIYTH 377 >gi|300773739|ref|ZP_07083608.1| tyrosine recombinase XerC [Sphingobacterium spiritivorum ATCC 33861] gi|300759910|gb|EFK56737.1| tyrosine recombinase XerC [Sphingobacterium spiritivorum ATCC 33861] Length = 293 Score = 96.3 bits (238), Expect = 6e-18, Method: Composition-based stats. Identities = 39/271 (14%), Positives = 85/271 (31%), Gaps = 26/271 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH-----IRSGVESRKHTPSSAIQFLTS 139 + ++ ++ D + H S + +S + +++ Sbjct: 14 KRYSNHTIEAYTHELTIFFTFLQDQGIPEEEADHRVIRFYLSHLMEEGRQATSVNRSISA 73 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM----QQFKSFWSEGSQPR-- 193 +R +K+ R+ NP ++ K + K+ M Q + + R Sbjct: 74 LRTYYKFLQRESLTDQNPLTLIKALKTPKKLPSVMEKDKMVGLLDQMEGAVDSFTDERDY 133 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAM---- 247 L E L +G+R ++ + + + N I K V + ++ L + Sbjct: 134 LVLELLFGTGIRLTELLQIKITDIDFYNKNILI-LGKRNKERLVPVNHTLLEKLKIYIQQ 192 Query: 248 ---TPIGKET--FFINNDKQKMNATQFSIWFKAKA--TKAGVNKSAHGVRKFSATISADA 300 I +T + + ++ KS H +R AT D Sbjct: 193 LDNQKIDNKTAFLIVTKEGKQAYPKMIYRIVHRYLSLISTQRKKSPHVLRHTFATALLDN 252 Query: 301 GATAHELMATYGWKTVDQAETYTK-GADRIR 330 GA + + G + + YT +R++ Sbjct: 253 GADLNAIKELLGHAGLAATQVYTHNSVERLK 283 >gi|237744578|ref|ZP_04575059.1| integrase/recombinase [Fusobacterium sp. 7_1] gi|229431807|gb|EEO42019.1| integrase/recombinase [Fusobacterium sp. 7_1] Length = 328 Score = 96.3 bits (238), Expect = 6e-18, Method: Composition-based stats. Identities = 41/295 (13%), Positives = 96/295 (32%), Gaps = 44/295 (14%) Query: 88 AVNSRISFESYFDQIIR--KSGDFDY---------RKITTKHIRSGV----ESRKHTPSS 132 + + + + + G+ ++ + I + + + + E RK +S Sbjct: 33 SEKTVKDYMFHLKDFLHFVYDGENNFSISEVIPLMQDIEKEDVEAYIVHLFEDRKLKKTS 92 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW--TKEDMQQFKSFWSEGS 190 L++++ L+K NP ++ K + +D+++ + S Sbjct: 93 VNTILSALKSLYKELESNGL--KNPVKYIKLFKVNRNIENILKVSIDDIRKIIGLYKIDS 150 Query: 191 QPR----LAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVELPDGFM 242 + + L Y+G+R + +H F + K+G + + + Sbjct: 151 EKKYRNITILYTLFYTGMRSKELLTLKFKHYLKRENEYFFKLIETKSGKDVYKPIHKSLV 210 Query: 243 K-------------LLAMTPIGKETFFINN--DKQKMNATQFSIWFKAKATKAGVNKSAH 287 K L + + ++ F + D ++ + + G + S H Sbjct: 211 KKLEEYKEYLMSMYSLDLKDLEEKYIFSTSVLDNSPLSYRSLNAIIQDMGKLIGKDISPH 270 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342 +R AT + +GA E+ G E Y R L K ++ + Sbjct: 271 NIRHAIATELSLSGADILEIRDFLGHSDTKVTEVYINA--RSILEKKVLEKLPEI 323 >gi|77464133|ref|YP_353637.1| site-specific tyrosine recombinase XerC [Rhodobacter sphaeroides 2.4.1] gi|126462976|ref|YP_001044090.1| site-specific tyrosine recombinase XerC [Rhodobacter sphaeroides ATCC 17029] gi|77388551|gb|ABA79736.1| putative site-specific recombinase [Rhodobacter sphaeroides 2.4.1] gi|126104640|gb|ABN77318.1| phage integrase family protein [Rhodobacter sphaeroides ATCC 17029] Length = 306 Score = 96.3 bits (238), Expect = 6e-18, Method: Composition-based stats. Identities = 44/249 (17%), Positives = 81/249 (32%), Gaps = 19/249 (7%) Query: 101 QIIRKSGDFDYRKITTKHIRSGVE---SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINP 157 + G + +R+ + +R S + L+++R W +E V Sbjct: 48 HLGEGYGLKRLASVPHADLRAWMAHERARGLGARSLARSLSAVRQFTGWLAEREGVDATA 107 Query: 158 CLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-------GSQPRLAFEFLLYSGLRCSDSC 210 LS PK + + RP ++ D + S +E ++ L GLR S++ Sbjct: 108 VLSARGPKFRRKLPRPLSEADAKALLSTVAEDAAEDWIRARDLAVVTLLYGCGLRISEAL 167 Query: 211 RA-GVQHLQNNIFSIKTQKTGTIITVELPDGFMKL-----LAMTPIGKETFFINNDKQKM 264 G H + I + + LP + L + F + Sbjct: 168 GLPGTAHPLPEVLRITGKGDKERLVPSLPVARAAVARYAALCPFDLASGVLFRGARGGPL 227 Query: 265 NATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 N + + G+ + H +R AT +AG + G ++ + Y Sbjct: 228 NPRLVARTMERARATLGLPPTATPHALRHSFATHLLNAGGDLRSIQELLGHASLSTTQVY 287 Query: 323 TKGADRIRL 331 T D RL Sbjct: 288 T-AVDGARL 295 >gi|301299429|ref|ZP_07205708.1| putative toxin-antitoxin system, toxin component, PIN family [Lactobacillus salivarius ACS-116-V-Col5a] gi|300852965|gb|EFK80570.1| putative toxin-antitoxin system, toxin component, PIN family [Lactobacillus salivarius ACS-116-V-Col5a] Length = 384 Score = 96.3 bits (238), Expect = 6e-18, Method: Composition-based stats. Identities = 56/332 (16%), Positives = 107/332 (32%), Gaps = 57/332 (17%) Query: 61 INSPRKKPTTL----KWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKIT 115 + + ++K T K +Y+ + + ++ + + + QI+ G KI Sbjct: 61 LPTSKRKIMTFDEAYKMWFEQYKTT-----VKESTAYTQNNIINVQILPYFGSLRVDKID 115 Query: 116 TKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP-- 173 T + V + + R + +A + + NP V PK++ Sbjct: 116 TAFCQKQVNRIFKNLKNYNNVINITRQILDYAKIMKQIKTNPMNDVIVPKKRKTLDDTDN 175 Query: 174 ----WTKEDMQQFKSFWSEGS--QPRLAFEFLLYSGLRCSDSCRAGVQHLQ--------- 218 +TKE ++ F + + Q + F L ++G+R + + Sbjct: 176 QVNFYTKEQLKVFLGALKKHTTYQMYVVFRVLAFTGMRKGELAALKWSDIDFNNETITID 235 Query: 219 -------NNIFSIKTQKTGTIITV----------------ELPDGFMKLLAMTPIGKETF 255 N I+ KT I EL K G Sbjct: 236 KTVAIDSNGGLHIQAPKTRKSIRTISVDDTTLNALRTWKNELRKELFKQGKNIDKGDGFI 295 Query: 256 FINNDKQKMNA--TQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGW 313 F N+ +N QF F K + HG R A++ ++GA+ E+ G Sbjct: 296 FHRNNGNFINKYIDQFLPSFLRKYNLPQIK--PHGFRHTHASLLFESGASIKEVQDRLGH 353 Query: 314 KTVDQA-ETYTKGADRIRLGIKNSRRISSVVD 344 + + + YT R K + + + +D Sbjct: 354 ENIKTTMDIYTHVTKSAR--EKTAEKFAKYID 383 >gi|307309696|ref|ZP_07589348.1| integrase family protein [Sinorhizobium meliloti BL225C] gi|306899908|gb|EFN30531.1| integrase family protein [Sinorhizobium meliloti BL225C] Length = 355 Score = 96.3 bits (238), Expect = 6e-18, Method: Composition-based stats. Identities = 44/267 (16%), Positives = 88/267 (32%), Gaps = 14/267 (5%) Query: 67 KPTTLKWLISEYRKSAHWGSLAVNSR-ISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125 K TTL L+ Y W +F D+I+ + + + + + Sbjct: 82 KETTLAELLQRY-ADILWDEGRHKYNVKAFIGELDEILLGARFSAFSQELLDGLIGALRK 140 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 R ++ ++ + + ++ L + A + + P +R K K +R ++ + Sbjct: 141 RGNSNATINRKMAALGKLLRKAYKMGDIHNLP--EFKRQKEKAGRLRFLEADEEEVLFRE 198 Query: 186 WSEGSQPRLAFEFLLY-SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244 + S+ L L +G R ++ + + K+G TV L Sbjct: 199 IASRSELYLYLSIFLVDTGARLGEAIALKWNDIHEGRATFWVTKSGRSRTVPLTVRAKDA 258 Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV----NKSAHGVRKFSATISADA 300 L F D+QK + + A AG+ + H +R A+ Sbjct: 259 LKRVADRSPGPFSRIDQQK-----YRAVWNAAKVDAGLGNEDDLVPHILRHTCASRLVRG 313 Query: 301 GATAHELMATYGWKTVDQAETYTKGAD 327 G + G +T++ Y A Sbjct: 314 GIDLRRVQMWLGHQTLEMTMRYAHLAS 340 >gi|294647358|ref|ZP_06724951.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CC 2a] gi|294809021|ref|ZP_06767743.1| site-specific recombinase, phage integrase family [Bacteroides xylanisolvens SD CC 1b] gi|292637317|gb|EFF55742.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CC 2a] gi|294443746|gb|EFG12491.1| site-specific recombinase, phage integrase family [Bacteroides xylanisolvens SD CC 1b] Length = 330 Score = 96.3 bits (238), Expect = 6e-18, Method: Composition-based stats. Identities = 34/282 (12%), Positives = 90/282 (31%), Gaps = 21/282 (7%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR----SGVESRKHT 129 L++ + + + + + + ++++ ITT IR E + + Sbjct: 55 LLNSFISAKKIEGCSDKTLTYYRNTIERLLVTL-SLAICHITTTDIRTYLSDYQEEHQSS 113 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 + F W ++Y+A +P + + K + + E ++Q + + Sbjct: 114 KVTIDNMRRIFSSFFAWLEDEDYIAKSPVRRIHKVKTDSLVKEVLSDEQLEQLRDSCT-N 172 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT----QKTGTIITVELPDG----F 241 + + L +G+R + + + + F + K V Sbjct: 173 KRDLAIIDILASTGIRVGELVKLNREDID---FHERQCVVFGKGNKERIVYFNARTKLHL 229 Query: 242 MKLLAMTPIGKETFFINNDKQK--MNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISA 298 + L F++ + + I + + K H R+ AT++ Sbjct: 230 QQYLNERTDDNPALFVSLHSPHTRLTISGVEIRIRKLGQSLSMPKVHPHKFRRTLATMAI 289 Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340 D G ++ G +D Y ++ + + + + + Sbjct: 290 DKGMPIEQVQRLLGHVRIDTTLHYA-IVNQNNVKLAHKKYLG 330 >gi|289165155|ref|YP_003455293.1| phage integrase [Legionella longbeachae NSW150] gi|288858328|emb|CBJ12196.1| putative phage integrase [Legionella longbeachae NSW150] Length = 333 Score = 96.3 bits (238), Expect = 6e-18, Method: Composition-based stats. Identities = 41/261 (15%), Positives = 88/261 (33%), Gaps = 12/261 (4%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129 + + + + K ++ I + D +R + + + + E T Sbjct: 57 SWQDAVVRWLKENE-HKRSLKDDIMHLRWLDPYLRGFQLHEITRDILEEVAIKKEDTGVT 115 Query: 130 PSSAIQFLTSMRVLFKWA-VRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 P++ + L +R + + A + E++ P V + + IR T + + + Sbjct: 116 PTTINRMLEVVRAILRKAQMEWEWLDKVPV--VRMRHVEKQRIRWLTIGEANRLLNELPS 173 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN----NIFSIKTQKTGTIITVELPDGFMKL 244 + +F L +GLR S+ + K I V L + + Sbjct: 174 HLKD--MADFSLSTGLRASNVTGLRWSDVDLIKRHAWIHPDQAKANKAIPVPLNAHALAI 231 Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGAT 303 L G T ++ + K + ++ +AG++ H +R A+ G + Sbjct: 232 LKRR-RGIHTDYVFTYQDKQIRQCNTKAWRKALDRAGIDNFRWHDLRHTWASWHVQNGTS 290 Query: 304 AHELMATYGWKTVDQAETYTK 324 EL GW + + Y Sbjct: 291 LQELQQLGGWSSFEMVLRYAH 311 >gi|296169729|ref|ZP_06851346.1| phage integrase [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295895626|gb|EFG75323.1| phage integrase [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 325 Score = 96.3 bits (238), Expect = 6e-18, Method: Composition-based stats. Identities = 46/272 (16%), Positives = 80/272 (29%), Gaps = 8/272 (2%) Query: 68 PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK 127 P + IS + + + I R+S +IT + RK Sbjct: 9 PQLWEAAISGWMIWLRIAGKREGTIELRRDHLRSIARRSRTSGPAEITLSTLVLLCSERK 68 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + TS+ + WA+ + V++NP + R K RP + ++ + Sbjct: 69 WSNDHRKSVRTSLISFYDWAIDADLVSMNPAAKLPRVKPDLPAPRPAPDDVWEELLAAAQ 128 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN---NIFSIKTQKTGTIITVELPDGFMKL 244 + RL +GLR ++ L I K G L DG Sbjct: 129 P--RERLMARLAGEAGLRRAEVALVHSDDLIRDLHGWSLIVHGKGGKQRVAPLNDGLTAE 186 Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATA 304 L F ++A S H +R AT+ Sbjct: 187 LRAFCTSHGYLFPGQVDGHISAEWVGTVISRLMP---PGWSMHKLRHRFATLGYSGTGNL 243 Query: 305 HELMATYGWKTVDQAETYTKGADRIRLGIKNS 336 + G +V + YT + R + ++ Sbjct: 244 RAVQEALGHASVATTQRYTAVSTREVRSVADA 275 >gi|194015373|ref|ZP_03053989.1| site-specific recombinase, phage integrase family protein [Bacillus pumilus ATCC 7061] gi|194012777|gb|EDW22343.1| site-specific recombinase, phage integrase family protein [Bacillus pumilus ATCC 7061] Length = 353 Score = 96.3 bits (238), Expect = 6e-18, Method: Composition-based stats. Identities = 42/211 (19%), Positives = 79/211 (37%), Gaps = 15/211 (7%) Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS- 187 +P S ++ ++R LF++A + +NP + E + + +++++ S Sbjct: 110 SPKSVNDYIKTLRTLFRFAQHEGSALLNPFDDTKLVSDPEEMVNILSPDELRRLLSAPDQ 169 Query: 188 ---EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ----NNIFSIKTQKTGTIITVELPDG 240 G + + FL+ S R + +++ FS KT V L Sbjct: 170 RTFVGFRDYVIMTFLVDSMARIGEILSLTKENVDYASSTVYFSAWDVKTRQGRFVPLERK 229 Query: 241 FMKLLAMTPIGKETF-----FINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFS 293 M L+ I E F F++N +++ F A + G+ K H R Sbjct: 230 TMNLIKELLIENEDFESPFVFLSNYGEQLETNHFRKQLNRYAEQVGITKKVHPHLFRHTG 289 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTK 324 AT+ + G L A G + + + YT Sbjct: 290 ATMYLENGGDIRHLQAMLGHRDMRMVKRYTH 320 >gi|194017070|ref|ZP_03055682.1| DNA integration/recombination [Bacillus pumilus ATCC 7061] gi|194010938|gb|EDW20508.1| DNA integration/recombination [Bacillus pumilus ATCC 7061] Length = 363 Score = 96.3 bits (238), Expect = 6e-18, Method: Composition-based stats. Identities = 67/351 (19%), Positives = 117/351 (33%), Gaps = 56/351 (15%) Query: 20 KIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYR 79 +I YY RR + + A +A+ + +++ + T+ I + Sbjct: 14 RIPYYDPVTQKRREKSKKGFRTKKEAATEAAIVQAEINGDFVR--KDDNITISSYIDLWF 71 Query: 80 KSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139 + + ++S I + G + +T K + K P A LT+ Sbjct: 72 EKYKLTVKKSSWDSRYDSII-VIKKNLGSCRVKDVTEKTYEGFLN--KIAPEYAKNTLTN 128 Query: 140 MRVLFK----WAVRQEYVAINPCLSVERPKRKT-----------EGIRPWTKEDMQQFKS 184 + +F AVR Y NP +V PK+ + ++ W KE+++ F Sbjct: 129 IHQVFNMMIREAVRDSYFKDNPIHAVNLPKKAKEKKVEELDEDLKDMKFWEKEEIKLFLQ 188 Query: 185 FWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ--------------- 227 S +PR F L+YSGLR ++ + IK + Sbjct: 189 VVSRKGRPRDLAMFLLLIYSGLRIGEAVALTWDKVDFKKSEIKVRYTLFREKDLKSNYEL 248 Query: 228 ---KTGTIIT-VELPDGFMKLLAMTPI--------------GKETFFINNDKQKMNATQF 269 KT + I V +P + L + ++ F +N A F Sbjct: 249 LSPKTESSIRNVPVPPQVIMQLRILKNVQEQVKNDVGELYKDEDFVFADNSGMPEPARNF 308 Query: 270 SIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319 + KAGV K + H +R A++ AG E G + Sbjct: 309 NYRMATYIKKAGVTKITPHNLRHTYASLLFAAGIDLKEAQRRLGHSSSKTT 359 >gi|86131808|ref|ZP_01050405.1| phage integrase family protein [Dokdonia donghaensis MED134] gi|85817630|gb|EAQ38804.1| phage integrase family protein [Dokdonia donghaensis MED134] Length = 296 Score = 96.3 bits (238), Expect = 6e-18, Method: Composition-based stats. Identities = 41/265 (15%), Positives = 95/265 (35%), Gaps = 26/265 (9%) Query: 85 GSLAVNSRISFES----YFDQIIRKSGDFDYRKITTKHIRSGVESRKH---TPSSAIQFL 137 + + ++ +++E +F + G+ D K+ IR+ + S + S + + Sbjct: 14 KNYSKHTVLAYEKDVTSFFVFLENNYGERDPVKVAYAQIRAWIISLVDAGLSSQSVNRKV 73 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS-----QP 192 +S++ +K+ ++ + ++P + + K P++++++ E + Sbjct: 74 SSLKSYYKFLLKTGDILVSPLVKHKSLKVSKRVQIPFSEKEVAIVLEELRESQDFTSLRD 133 Query: 193 RLAFEFLLYSGLRCSDSC--RAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA---- 246 L E L +G+R ++ G I +K K + L G + L Sbjct: 134 LLIVELLYGTGMRRAELIDLTMGSVDFSQKILKVK-GKRDKERFIPLLPGVITTLERYVV 192 Query: 247 -----MTPIGKETFFINNDKQKMNATQFSIWFKAKATKA--GVNKSAHGVRKFSATISAD 299 E + K+ +T ++A S H +R AT + Sbjct: 193 ERAQVAQSGNSEPLLVTLKGLKVYSTLVYRIINRYFSEASDKFKTSPHILRHSFATHLLN 252 Query: 300 AGATAHELMATYGWKTVDQAETYTK 324 GA + + G ++ + YT Sbjct: 253 QGADLNVVKELLGHASLASTQVYTH 277 >gi|306836381|ref|ZP_07469359.1| tyrosine recombinase XerD [Corynebacterium accolens ATCC 49726] gi|304567741|gb|EFM43328.1| tyrosine recombinase XerD [Corynebacterium accolens ATCC 49726] Length = 305 Score = 96.3 bits (238), Expect = 6e-18, Method: Composition-based stats. Identities = 40/266 (15%), Positives = 84/266 (31%), Gaps = 22/266 (8%) Query: 85 GSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMR 141 A + + + + I DF+ + + + + V K + A + S++ Sbjct: 32 KGRAEATVRGYRADLKNLAQEIDTFADFNLNNL-RQWLGNAVAEGKARATLARRT-ASVK 89 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM-----QQFKSFWSEGSQPRLAF 196 WA R+ Y+ + + PK + + + Sbjct: 90 AFSTWAERERYLTRDVAARLVTPKVGQHLPTVMAPQQAGELVGNAVSVDEAHFQRDSAIL 149 Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-----ELPDGFMKLLAM---- 247 E L +G+R ++ R ++ + + + G V D + + Sbjct: 150 ELLYATGMRVAELVRLDLEDVDFKRSTARVTGKGNKQRVVPFGAAATDALQQWIDGGRKE 209 Query: 248 -TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAH 305 + F+ + +++ Q AT G + HGVR +AT + GA Sbjct: 210 MARGETQAIFVGSRGARIDQRQVRRIVDKAATVTGTSGLTPHGVRHLAATHLLEGGADLR 269 Query: 306 ELMATYGWKTVDQAETYTKGADRIRL 331 + G ++ + YT RL Sbjct: 270 VVQELLGHSSLSTTQIYTH-VSAKRL 294 >gi|256840177|ref|ZP_05545685.1| LOW QUALITY PROTEIN: tyrosine type site-specific recombinase [Parabacteroides sp. D13] gi|256737449|gb|EEU50775.1| LOW QUALITY PROTEIN: tyrosine type site-specific recombinase [Parabacteroides sp. D13] Length = 267 Score = 96.3 bits (238), Expect = 6e-18, Method: Composition-based stats. Identities = 44/213 (20%), Positives = 76/213 (35%), Gaps = 18/213 (8%) Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVE---RPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191 + + A++ + +AINP ++ +PK + T E++++ + E Sbjct: 54 NLYKKFAWVIRKAMQADIMAINPLDKIDNTDKPKPEDGQREFLTIEEIKRLMNTPCEDDM 113 Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNN-----IFSIKTQKTGTIITVELPDGFMKLLA 246 + AF F GLR SD + L + I I+ KT + +K L Sbjct: 114 LKCAFIFCCLVGLRYSDVKKLVWNDLYEDNEGAIILRIRVTKTKRCEDFPISKEALKWLP 173 Query: 247 -MTPIGKETFFINNDKQKMNATQFSIW-FKAKATKAGVNK--SAHGVRKFSATISADAGA 302 G E F K+ S K T AG+ K + H R +AT++ G Sbjct: 174 ERIGSGDEKIF------KLPKNDNSNRKLKHWCTLAGITKNVTFHVARHTAATLNLSLGV 227 Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335 + G + + Y K D + + Sbjct: 228 PIETVSKLLGHTKISTTQIYAKVIDANKKAAVH 260 >gi|257784351|ref|YP_003179568.1| integrase family protein [Atopobium parvulum DSM 20469] gi|257472858|gb|ACV50977.1| integrase family protein [Atopobium parvulum DSM 20469] Length = 403 Score = 96.3 bits (238), Expect = 6e-18, Method: Composition-based stats. Identities = 45/293 (15%), Positives = 91/293 (31%), Gaps = 44/293 (15%) Query: 74 LISEYRKS-AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132 Y KS + + S+++ I G+ ++IT + V + + Sbjct: 77 YCLNYFKSLVATQQIERRTYTSYKNNVRYIDLFFGEKRLQEITVTDVELYVSWLYDSGYA 136 Query: 133 AIQFLTSM---RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS-- 187 A + R + AV + +PC +++ PK P + ++ + S Sbjct: 137 ANTVKKAFNSFRACTRHAVAIRDLQYDPCAAIKAPKGYLAPPNPLNEPSRKKLQVMLSAL 196 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHL-----------------QNNIFSIKTQKTG 230 E S LA Y+G+R + C + + IK K G Sbjct: 197 ELSPMVLATYLAYYTGMRREECCGLQWKDVKFKAEDVTAHLCRAISYDGGKTYIKGLKNG 256 Query: 231 TIITVELPDGFMKLLA--------------MTPIGKETFFINNDKQKMNATQFSIWFKAK 276 TV +P + +L + + + + + + + W+K+ Sbjct: 257 KDRTVPIPAPLVDILKQWRSKYIEDCMLMGIAFSEEMYVLGDFSGEYLRPERATAWWKSH 316 Query: 277 ATKAGVNKS------AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 + + G+ + H +R AT A G ++ Y Sbjct: 317 SEEWGLLGTQGRRPVFHDLRHTYAT-IAVRTMDIKSAQDILGHSDINMTMRYA 368 >gi|7263003|gb|AAF44051.1|AF206717_5 ResU [Shuttle vector pI3] Length = 321 Score = 96.3 bits (238), Expect = 6e-18, Method: Composition-based stats. Identities = 41/281 (14%), Positives = 85/281 (30%), Gaps = 36/281 (12%) Query: 85 GSLAVNSRISFESYFDQIIR--KSGDFD-------YRKITTKHIRSGVESRKHTPSSAIQ 135 + + + + + D + +++ +R+ + + +P + Sbjct: 18 QGRSPATVREYLKDVRLLRSWLDAEDKPQHLRGRDWGELSAADLRAFLAAADPSPRRFHR 77 Query: 136 FLTSMRVLFKWAVRQEYVA--INPCLSVERPKRKTEGIRPWTKEDMQQFKSF------WS 187 + S R +++ VR + + + + PK T ED+ + Sbjct: 78 LVNSWRSFWRFLVRVQKLPGVQDITADLTTPKIPKRAPVKLTLEDVSKLLEVVYRDKSPQ 137 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHL---QNNIFSIKT-QKTGTIITVELPD---- 239 G + FL +GLR S+ + + +++ K V L Sbjct: 138 RGLKNWCIVAFLYGTGLRISEMLAMKFADIEYQDGSPVAVRVIGKGDKERRVPLSPTAQG 197 Query: 240 GFMKLLAMTPIGKETFFI--------NNDKQKMNATQFSIWFKAKATKAGVN---KSAHG 288 M+ L Q+M A A +AG++ S H Sbjct: 198 ALMRWLRERKTHGNPVTPWVWSPLSGKRYGQQMQARTIGKMLDTAAERAGLDPATVSPHK 257 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 +R AT + G T E+ G + + Y + R Sbjct: 258 LRHTFATTLLNNGRTLDEIKELLGHENIQTTMIYAQTDTRR 298 >gi|229181765|ref|ZP_04309077.1| Integrase [Bacillus cereus 172560W] gi|228601703|gb|EEK59212.1| Integrase [Bacillus cereus 172560W] Length = 267 Score = 96.3 bits (238), Expect = 6e-18, Method: Composition-based stats. Identities = 39/265 (14%), Positives = 91/265 (34%), Gaps = 36/265 (13%) Query: 117 KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176 + + ++ + + + +R +FK AV E + N V++P+ + ++ W+ Sbjct: 3 QSYYAELKEKGLSNGTISNIHRCLRCIFKHAVEWEIIHENIMNKVKKPREEQGEMKTWSS 62 Query: 177 EDMQQFKSFWSE-GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235 E+ +F + E + + F +Y+G+R + + + + I K+ Sbjct: 63 EECNRFLQYLKEKNIKYHIFFLLAIYTGMRRGELLALTWKDIDFDNKRILVNKSLVKTEK 122 Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFK--------------------- 274 L K + + F+ Q + + +F+ Sbjct: 123 GLFKAATKTKSSNRSISISSFVIRKLQSYYSYKKKEFFRWGIHLDEEAYIFTGNTIHSPL 182 Query: 275 ----------AKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETY 322 TKAGV + H +R AT+ AG + G ++ + Y Sbjct: 183 HIDAPHRFLNDHYTKAGVPRIRIHDLRHTHATLMLQAGEHPKIVQDRLGHSSIQMTLDKY 242 Query: 323 TKGADRIRLGIKNSRRISSVVDSDD 347 + + + + S++ S++ Sbjct: 243 SHITQ--NMQQQAAENFESIIKSNE 265 >gi|16519719|ref|NP_443839.1| putative integrase/recombinase of undefined transposable element [Sinorhizobium fredii NGR234] gi|2497416|sp|P55429|Y4EF_RHISN RecName: Full=Putative integrase/recombinase y4eF gi|2182375|gb|AAB91651.1| putative integrase/recombinase of undefined transposable element [Sinorhizobium fredii NGR234] Length = 251 Score = 96.3 bits (238), Expect = 6e-18, Method: Composition-based stats. Identities = 28/220 (12%), Positives = 73/220 (33%), Gaps = 12/220 (5%) Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 +K P S L+++R F + +++ P + PK+ + + +++Q F Sbjct: 16 NEKKLAPGSIHIALSALRFFFNVTLERDWA---PEEVLPLPKKPQKLPIILSPDEVQHFL 72 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ--KTGTIITVELPDGF 241 ++ + +GLR S++ + + + ++ + K V L Sbjct: 73 GCVAD-VKHHAILTTCYAAGLRISEAVQLKPTDIDSQRMVVRVEHGKGQKDRYVMLSPKL 131 Query: 242 MKLLA---MTPIGKETFFINND-KQKMNATQFSIWFKAK--ATKAGVNKSAHGVRKFSAT 295 +++L + F + + ++ + H +R Sbjct: 132 LEILRDYWRMWRPEAWLFPGDRAGHPITRYAVGQACVKPHDLSRLSKPVTPHSLRHAFVV 191 Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335 +AGA + G +++ Y + A ++ Sbjct: 192 HLLEAGADVRTIQPLLGHRSLATTAHYLRIATNKVCATES 231 >gi|303327829|ref|ZP_07358269.1| prophage DLP12 integrase [Desulfovibrio sp. 3_1_syn3] gi|302862190|gb|EFL85124.1| prophage DLP12 integrase [Desulfovibrio sp. 3_1_syn3] Length = 320 Score = 96.3 bits (238), Expect = 6e-18, Method: Composition-based stats. Identities = 42/300 (14%), Positives = 99/300 (33%), Gaps = 13/300 (4%) Query: 48 MSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG 107 SA + + + R L ++ H + R+ ++ G Sbjct: 8 HSATSRPSGNSRRRDGARAAILRLDAFVAAVYL-PHVRLRKRSWRVDERIARQRLSPAFG 66 Query: 108 DFDYRKITTKHIRSGVESRKHT---PSSAIQFLTSMRVLFKWAVRQEYVA--INPCLSVE 162 +I + + P++ + L + + A+ + +PC V Sbjct: 67 ARRLDRIRRGEVEDWLRDLAEEGLCPATCNRILAVFKSVCSLAMLHGVLPAGQSPCADVP 126 Query: 163 RPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA-FEFLLYSGLRCSDSCRAGVQHLQNNI 221 K + R ++ Q+ ++P A LL +G R S+ +A ++++ ++ Sbjct: 127 PFKIHLQRERYLAPDEAQRLMRELERSARPEAAAIRLLLLTGARKSEILKARWENVRLDL 186 Query: 222 --FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFI---NNDKQKMNATQFSIWFKAK 276 ++ K+G + L D + ++ P G ++ + + ++ + W + Sbjct: 187 RLLTVPLSKSGKPRHLPLSDAAVAVIRALPRGPGCPWLFPGHAPGKPLS-DVYLFWDGLR 245 Query: 277 ATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336 + H +R A+ +AG + +E+ G Y L S Sbjct: 246 RGLGLADVRIHDLRHTFASFLVNAGHSLYEVQKLLGHSDPRTTMRYAHLGQASLLAAAQS 305 >gi|83310003|ref|YP_420267.1| integrase [Magnetospirillum magneticum AMB-1] gi|82944844|dbj|BAE49708.1| Integrase [Magnetospirillum magneticum AMB-1] Length = 359 Score = 96.3 bits (238), Expect = 6e-18, Method: Composition-based stats. Identities = 51/335 (15%), Positives = 106/335 (31%), Gaps = 31/335 (9%) Query: 12 TKERTRHGKIIY--YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69 K +GKI + R+ + + + + + + + T Sbjct: 15 IKRVGTNGKISWQARVRRKGFPDMF-KTFRTKVEAQKWAAVTESEMARHVFTDRSLAERT 73 Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129 TL + YR +++ + K + + ++ V +K T Sbjct: 74 TLGDALEVYRDEVTVEKAGHQEGYVIKAWLKHPLSK---RTLSSLKVRDFQAWVTEKKAT 130 Query: 130 --PSSAIQFLTSMRVLFKWAVRQEYVAI--NPCLSVERPKRKTEGIRPWT---------K 176 P + + + L+ + NP L + P R + Sbjct: 131 VGPKTIRLHIGVISNLYNRLENLLEIEALPNPVLKLILPPLPEGRDRRLNVIEHDDGTVR 190 Query: 177 EDMQQFKSFWSEGSQP--RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT----QKTG 230 + + ++ P R A EF L +R ++ + +H+ N ++ KTG Sbjct: 191 NEAEALIGACADAVNPWIRPAVEFALDGAMRRNEIVQMRWEHVDLNAGMVRLPAAITKTG 250 Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGV 289 V L +++L P I+ + A F +AG++ H + Sbjct: 251 VSRDVALSPAGVQVLRTLPRS-----IDGRVFPLTADALYRAFVRARKRAGLDDLHFHDL 305 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 R +A+ + G E+ + G KT+ + Y Sbjct: 306 RHEAASRLREEGLDLMEIASITGHKTLQMLKRYVH 340 >gi|291544906|emb|CBL18015.1| Site-specific recombinase XerD [Ruminococcus sp. 18P13] Length = 331 Score = 96.3 bits (238), Expect = 6e-18, Method: Composition-based stats. Identities = 41/299 (13%), Positives = 93/299 (31%), Gaps = 39/299 (13%) Query: 85 GSLAVNSRISFESYFDQIIRKS------------GDFDYRKITTKHIRS----------- 121 + + + ++ D D R + +R Sbjct: 24 KGRSPRTVAEYNLDLRLFLKYIKFMKTEHNQPAVEDMDIRDVDITLLRQVTLQDIYQFEY 83 Query: 122 -GVESRKHTPSSAIQFLTSMRVLFKWA-VRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179 + R++ + + ++++ F + + NP +E P K + + E+ Sbjct: 84 YLQDDRQNRDRARSRKTSAVKGFFSYLTYNMTLLEKNPAEHLELPGVKHSLPKFLSLEES 143 Query: 180 QQFKS--FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVE 236 + S + L G+R S+ VQ + ++ K + Sbjct: 144 LRMLSSVESDHPQRDYCILVLFLNCGIRLSELVGINVQDVDMYERRLRILGKGNKERMIY 203 Query: 237 LPD-------GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFK---AKATKAGVNKSA 286 L D +++ P F++ + ++++ + + A G S Sbjct: 204 LNDACLSAITEYLQTRKNPPTEPNALFLSRNNRRISRRRVQQIVESVLKNADLGGKGLST 263 Query: 287 HGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344 H +R +AT+ G L G K++ E YT +D R +++V + Sbjct: 264 HKLRHTAATLMYQHGNVDTLTLKEILGHKSIVTTEIYTHLSDEQRQDAIEHNPLANVKN 322 >gi|229590798|ref|YP_002872917.1| integrase (pseudogene) [Pseudomonas fluorescens SBW25] gi|229362664|emb|CAY49573.1| integrase (pseudogene) [Pseudomonas fluorescens SBW25] Length = 323 Score = 96.3 bits (238), Expect = 6e-18, Method: Composition-based stats. Identities = 56/331 (16%), Positives = 95/331 (28%), Gaps = 45/331 (13%) Query: 22 IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKS 81 Y R G+R +P + + L TP + ++ Y K Sbjct: 1 YYDGRTTDGKRKEIPLGTDLDQAKVEWARLERKTPPKPTHLMS--------YVFDRYEKE 52 Query: 82 AHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMR 141 ++ ++ Q+ R IT + + ++R A + + + Sbjct: 53 II-PGKSIRTQSDNRKELKQLRRAFESAPIESITPQVVAQYRDARTAKVR-ANREIALLS 110 Query: 142 VLFKWAVRQEYVAI-NPCLSVERPKRKTE----GIRPWTKEDMQQFKSFWSEGSQPRLAF 196 F A NPC V R K K G W + + A Sbjct: 111 HAFTIAREWGLTDKANPCFGVRRNKEKPRDYYAGATVWNAVYAEAVQELKD-------AM 163 Query: 197 EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP------------DGFMKL 244 + +G R +D + L N I KT + + L D + Sbjct: 164 DLAYLTGQRPADVLKIAATDLNNGFLLIGQGKTEKRLRLRLEDDGIQSGLSSFIDDLQER 223 Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHG-------VRKFSATIS 297 A+ I T N +M+ + KA + SA G +R+F Sbjct: 224 RAVNGIRTSTLITNASGLRMSQQMLRNRWDDAREKAAIKASADGDPALATSIRQFQFKDI 283 Query: 298 ADAGATAHEL---MATYGWKTVDQAET-YTK 324 A+ EL G T + + Y + Sbjct: 284 RPKAASEIELTHASRLLGHSTEEMTKKVYRR 314 >gi|223983261|ref|ZP_03633454.1| hypothetical protein HOLDEFILI_00734 [Holdemania filiformis DSM 12042] gi|223964754|gb|EEF69073.1| hypothetical protein HOLDEFILI_00734 [Holdemania filiformis DSM 12042] Length = 343 Score = 96.3 bits (238), Expect = 6e-18, Method: Composition-based stats. Identities = 40/279 (14%), Positives = 97/279 (34%), Gaps = 15/279 (5%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH----T 129 LIS++ + + + +ES ++ K + +TT +R+ + + + Sbjct: 68 LISKFISAKEIEGCSKRTTKYYESTLIKMNEKI-NMSITYMTTDDLRTYLTDYQKMNNCS 126 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 +S ++ F W + Y+ +P + + K ++ E ++ + + Sbjct: 127 KASVDNIRRNLSSFFSWLEEENYILKSPMKRIHKIKTDKVIKETYSDETLELLRDSCTS- 185 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDG----FMKL 244 + + L +G+R + + + + N + K V Sbjct: 186 LRDLAIIDLLSSTGMRVGELVKLNINDIDFENRECVVFGKGNKERPVYFDARTKIHLKNY 245 Query: 245 LAMTPIGKETFFINND--KQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAG 301 L F++ D ++ + I + + G++K H R+ AT + D G Sbjct: 246 LNTRNDDNPALFVSLDLPHDRLKISGVEIRLRQLGRRLGISKVHPHKFRRTVATKAIDKG 305 Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340 ++ + G +D Y ++ + + R IS Sbjct: 306 MPIEQVQSLLGHSQIDTTMHYA-MVNQNNVKESHRRYIS 343 >gi|212693440|ref|ZP_03301568.1| hypothetical protein BACDOR_02956 [Bacteroides dorei DSM 17855] gi|212663953|gb|EEB24527.1| hypothetical protein BACDOR_02956 [Bacteroides dorei DSM 17855] Length = 297 Score = 96.3 bits (238), Expect = 6e-18, Method: Composition-based stats. Identities = 48/283 (16%), Positives = 99/283 (34%), Gaps = 37/283 (13%) Query: 78 YRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT---TKHIRSGVESRKHTPSSA 133 + KSA +++ + + + D++ +T + ++ + + ++ Sbjct: 2 FAKSAIDNSDKKQSTKDNLHTTLAVLHDFRSGLDFKDLTYTFLRDFEQYLKEKGNAVNTI 61 Query: 134 IQFLTSMRVLFKWAVRQEYVAIN--PCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191 + + +R L A+ Q Y+ N P + K++ +++++ ++ E Sbjct: 62 AKHMRQLRTLVNEAINQGYMHANAYPFRKYK-IKQEKGRHEFLIPDELKKLETVEVEEES 120 Query: 192 PR---LAFEFLLYSGLRCSDSCRAGVQHLQN----NIFSIKTQKTGTIITVELP----DG 240 R AF F Y+GLR SD C+ ++ K+ KTG I + L Sbjct: 121 MRHVLDAFLFCCYTGLRYSDFCQLTPENFIRINGKRWLYFKSVKTGVEIRLPLHLLFESR 180 Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISA 298 + +L P + ++ + + A G+ K H R AT+ Sbjct: 181 ALGILDRYPDSGSLAAL------PCNSEVNRQLRKLAGLCGIKKRITYHVSRHTCATLLI 234 Query: 299 DAGATAHELMATYGWKTVDQAETYT-----------KGADRIR 330 G + G +V + Y+ K A R R Sbjct: 235 HQGVAITTVQKLLGHTSVKTTQIYSEILSSTIVRDLKNAQRKR 277 >gi|169343418|ref|ZP_02864422.1| phage integrase [Clostridium perfringens C str. JGS1495] gi|169298504|gb|EDS80590.1| phage integrase [Clostridium perfringens C str. JGS1495] Length = 386 Score = 96.3 bits (238), Expect = 6e-18, Method: Composition-based stats. Identities = 45/322 (13%), Positives = 94/322 (29%), Gaps = 58/322 (18%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQII--RKSGDFDYRKIT---TKHIRSGVES 125 + L + + H ++ +E + I G + + + + + Sbjct: 67 FQGLFKSWLFNTHLLDKKPSTIERYEGLYRNYILNSSLGKSKIKNLNSLVIQEYYNNLYK 126 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAIN---------PCLSVERPKRKTEGIRPWTK 176 + S+ ++ + Y + P + E ++ T Sbjct: 127 GGRSVSTLKMLHKVIKPFLLFLYNNGYTKKDFGSKGLIKIPTEKI----NNEEELQVLTL 182 Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII--- 233 E+ + F + EG++ +L F L +GLR + ++ +++K KT + Sbjct: 183 EEQKIFLNSL-EGNKDKLIFMTALMTGLRLGELLNLKWSNVDLKEYTLKVDKTIKRVKNI 241 Query: 234 -------------------TVELPDGFMKLLAMTPIG--------------KETFFINND 260 V +P +K L + F + Sbjct: 242 ETGKTELIEQEPKTKKSKRVVPIPLSLVKDLKELKKEQNKTKLLIGELYKNNDLVFATDF 301 Query: 261 KQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVD-Q 318 +++ + FK KA + K H +R AT + + G + Sbjct: 302 GNYLDSNNINKRFKKALIKANLEPKKFHSLRHTYATRLFENDVPLKTVSELLGHSNIQIT 361 Query: 319 AETY-TKGADRIRLGIKNSRRI 339 A TY T D + I I Sbjct: 362 ANTYITVLEDEKKKVINQLDNI 383 >gi|237745754|ref|ZP_04576234.1| phage integrase [Oxalobacter formigenes HOxBLS] gi|229377105|gb|EEO27196.1| phage integrase [Oxalobacter formigenes HOxBLS] Length = 354 Score = 96.3 bits (238), Expect = 6e-18, Method: Composition-based stats. Identities = 41/241 (17%), Positives = 85/241 (35%), Gaps = 22/241 (9%) Query: 95 FESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVR-QEYV 153 Y D+I R ++ + TP+ A ++L+ +R +F AV+ E++ Sbjct: 91 RSRYLDEITRPM----------IARIGEIKKAESTPARANRYLSLLRAIFNRAVKIWEWL 140 Query: 154 AINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAG 213 P + + +R T E++++ + +P F F + +GLR S+ Sbjct: 141 PKAPT--ITLYREPKLRVRYLTPEEIRRVFDELPDHQKP--IFTFSIMTGLRRSNVLNLR 196 Query: 214 VQHLQ----NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF 269 + I S K G V + ++L + +++ Sbjct: 197 WDQVDFMQDAIIISGNEMKAGKTHVVPMSATVKQILMDQVGKHPQYVFTYRGRRIG--DI 254 Query: 270 SIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 F+ + G+ + H R A+I G +EL W + + + Y + + Sbjct: 255 KTAFRKALKRTGITDYRWHDNRHTWASILIQNGVPLNELQEMGAWNSAEMVKRYAHLSPQ 314 Query: 329 I 329 Sbjct: 315 K 315 >gi|75761152|ref|ZP_00741143.1| DNA integration/recombination/inversion protein [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228904570|ref|ZP_04068646.1| DNA integration/recombination/inversion protein [Bacillus thuringiensis IBL 4222] gi|74491351|gb|EAO54576.1| DNA integration/recombination/inversion protein [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228855051|gb|EEM99634.1| DNA integration/recombination/inversion protein [Bacillus thuringiensis IBL 4222] Length = 392 Score = 96.3 bits (238), Expect = 6e-18, Method: Composition-based stats. Identities = 53/324 (16%), Positives = 105/324 (32%), Gaps = 55/324 (16%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130 K + E+ S ++S + ++++ + + IT K ++ + Sbjct: 68 FKDFVQEWLNIYS-KSTKISSLRVRQKQSNKLVDFFANIKMKDITKKMYQTALNDLHDK- 125 Query: 131 SSAIQFLTSM----RVLFKWAVRQEYVAINPCLSVERPKR---------KTEGIRPWTKE 177 A L + R++FK A+ + + NP +V+ P++ + I+ KE Sbjct: 126 GYAFNTLDGIHTAGRMIFKKAIELQIIKSNPTDNVKLPRKVETVEDIENDKKAIKYLEKE 185 Query: 178 DMQQFKSFWSEG--SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT------ 229 ++ F E + F L YSGLR + + +IK KT Sbjct: 186 ELAHFLQVAKEKGLDNDYVFFSILAYSGLRAGELLALKWTDVDFENNTIKITKTLYNPDN 245 Query: 230 -------------GTIITVELPDGFMKLLAMTP--------------IGKETFFINNDKQ 262 G+I T+++ G MKLL + + Sbjct: 246 NSQHYHLLTPKTKGSIRTIKMDQGIMKLLKSHKAKQNELKLYTRPQYVDQGFVITKASGY 305 Query: 263 KMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQA- 319 K + + K + H R ++ +AG E+ G ++ Sbjct: 306 PEVMKMIQNRLKRLIKLSNITKNITPHSFRHTHTSLLIEAGVGIKEIQQRLGHTDIETTM 365 Query: 320 ETYTKGADRIRLGIKNSRRISSVV 343 Y + K S++ S ++ Sbjct: 366 NIYAHMT--KNMEEKASQKFSELM 387 >gi|291288556|ref|YP_003505372.1| integrase family protein [Denitrovibrio acetiphilus DSM 12809] gi|290885716|gb|ADD69416.1| integrase family protein [Denitrovibrio acetiphilus DSM 12809] Length = 386 Score = 96.3 bits (238), Expect = 6e-18, Method: Composition-based stats. Identities = 52/292 (17%), Positives = 107/292 (36%), Gaps = 23/292 (7%) Query: 55 TPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFES-YFDQIIRKSGDFDYRK 113 +E + R T L E+ +A N+R + S + + I G Sbjct: 72 QKPKEELEVDRFLTATFDVLYLEWIDHK--THIAKNTRRTMLSFHRNHISPYIGHKLLGD 129 Query: 114 ITTKHIRSGVESRKHTPSSA--IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171 IT K IR + + + L S+R F V + ++ +P V+ + + I Sbjct: 130 ITEKDIRMMMTVMSKVNRNVVVNRKLRSVRSFFNEVVEEGHLKESPFKKVKYLRNEKVDI 189 Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAF-EFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQ- 227 +P+ +E++ + ++E +F FL +SG R ++ +N I+ Sbjct: 190 KPFNQEELARLLVGFAEKYPAYESFVAFLAFSGCRPNEVVGLKWDKIDWENRKILIREGF 249 Query: 228 --------KTGTII-TVELPDGFMKLLAM---TPIGKETFFINNDKQKMNATQFSIWFKA 275 KT + + +++ + LL I E F+N +++ F + Sbjct: 250 VLGEETLLKTDSSVRDIDMTEPLEVLLLQQLDKGIDSEYVFVNEFNRRICWENFRQKYHR 309 Query: 276 KATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKG 325 + ++ A+ +R A+++ G + G + TYT+ Sbjct: 310 VLKLKNIVSRPAYQLRHTFASMAIKNGEDILWVSRMLGHSNLKTTLTTYTRY 361 >gi|262201386|ref|YP_003272594.1| integrase family protein [Gordonia bronchialis DSM 43247] gi|262084733|gb|ACY20701.1| integrase family protein [Gordonia bronchialis DSM 43247] Length = 390 Score = 96.3 bits (238), Expect = 6e-18, Method: Composition-based stats. Identities = 58/328 (17%), Positives = 106/328 (32%), Gaps = 37/328 (11%) Query: 22 IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKS 81 + R R + + AY+S LT + +++ R T+ L E+ + Sbjct: 29 RWLVRWVDESREHSKSFDKKSDATAYLSELTTARNTGRFVH-ERAGRVTVAALWGEW--T 85 Query: 82 AHWGSLAVNSRISFE-SYFDQIIRKSGDFDYRKITTKHIRSGVESRKH---TPSSAIQFL 137 A G L+ + S E +Y ++ + I +R+ V + + + Sbjct: 86 AQAGHLSQKTIASRETAYCCHVMPRWAGVTVGDIRVTAVRAWVADMAQAGVGVPTIERAV 145 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFE 197 +R L + AV ++ NPC++V+ P+R + +Q + + E Sbjct: 146 GVLRGLCELAVDDRRISANPCVNVKLPRRSHPDRAYLSVPHVQALAEAITFRPE---VVE 202 Query: 198 FLLYSGLRCSDSCRAGVQHLQ---------------NNIFSIKTQKTGTIITVELPDGFM 242 L Y+GLR + V T KT +V P Sbjct: 203 LLAYTGLRWGEMAALRVSDFDMLRRRVDVSRSVTEVRGHLVWGTPKTHERRSVPFPAVLA 262 Query: 243 KLLAMTPIGK---ETFFINNDKQK-----MNATQFSIWFKAKATKAG---VNKSAHGVRK 291 + +A GK + F F K +A + S H +R Sbjct: 263 ETIAPLMAGKGRDDLVFTAESGGVLRNSIWRPRVFDKAVKG-CQRADDTFPSLSPHDLRH 321 Query: 292 FSATISADAGATAHELMATYGWKTVDQA 319 +A+++ AGA + G Sbjct: 322 TAASLAISAGANVKAVQRMLGHAKASMT 349 >gi|254303662|ref|ZP_04971020.1| possible bacteriophage integrase/recombinase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148323854|gb|EDK89104.1| possible bacteriophage integrase/recombinase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 329 Score = 96.3 bits (238), Expect = 6e-18, Method: Composition-based stats. Identities = 34/262 (12%), Positives = 87/262 (33%), Gaps = 14/262 (5%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS- 132 + + + H + S +++ + + +K D + ITT +R +++ + ++ Sbjct: 54 YLEAFLSAKHVEGCSRKSLKYYKATIENLFKKI-DKSIKHITTNDLREYLDNYQKEGNAS 112 Query: 133 ---AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 F W ++++ +P + + K T ++ E M+ + Sbjct: 113 KITIDNIRRIFSSFFAWLEEEDHILKSPVRRIHKVKTGTVVKETYSDEAMEIMRDNCKS- 171 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDG----FMKL 244 + + L +G+R + + ++ + + K V Sbjct: 172 LRDLAIIDMLASTGMRVGELVKLNIEDIDFEGRECVVFGKGDKERKVYFDARTKIHLHNY 231 Query: 245 LAMTPIGKETFFIN--NDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAG 301 L F++ +++ + I + K + K H R+ AT + D G Sbjct: 232 LKTRDDDNSALFVSLLKPHKRLQISGVEIMLRQLGRKLNITKVHPHKFRRTLATKAIDKG 291 Query: 302 ATAHELMATYGWKTVDQAETYT 323 ++ G + +D Y Sbjct: 292 MPIEQVQQLLGHQKIDTTLQYA 313 >gi|331647433|ref|ZP_08348525.1| putative phage integrase protein [Escherichia coli M605] gi|331043157|gb|EGI15295.1| putative phage integrase protein [Escherichia coli M605] Length = 358 Score = 96.3 bits (238), Expect = 6e-18, Method: Composition-based stats. Identities = 43/276 (15%), Positives = 87/276 (31%), Gaps = 26/276 (9%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--K 127 T+ I Y+ ++ N+ + + I K G +ITT+HI ++ Sbjct: 75 TMADWIERYKTILIRRKVSRNTYKIRVNQLETIKEKLGGILLTEITTRHIAEFLDLWIEG 134 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK--RKTEGIRPWTKEDMQQFKSF 185 + A + + +F+ A+ + ++ NP PK E ++ T +++ Sbjct: 135 GKNTMAGSMRSVLSDMFREAIVEGRISQNPVTPTRAPKIVVTRERLKLKTYNCIREAADQ 194 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245 LA + L +G R D + ++ I+ KTG +I + L Sbjct: 195 LPAWFP--LAMDLALVTGQRREDITNMRFSDIYDDRLHIRQIKTGMMIAIPLSLSLPVAG 252 Query: 246 AMTPI--------GKETFFINNDKQKMN------ATQFSIWFKAKATKAGV-----NKSA 286 + + I+ +K + + F A G+ + Sbjct: 253 LRLGTVVEQCRLVSRGDYLISAGIRKNSPDGSIHPDGLTKKFVAARKLTGIQFSENPPTF 312 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 H +R A G + + Y Sbjct: 313 HEIR-SLAGRLYKETCGEEFAQRLLGHTSEKTTKMY 347 >gi|300727390|ref|ZP_07060803.1| phage integrase family protein [Prevotella bryantii B14] gi|299775330|gb|EFI71927.1| phage integrase family protein [Prevotella bryantii B14] Length = 328 Score = 96.3 bits (238), Expect = 6e-18, Method: Composition-based stats. Identities = 41/262 (15%), Positives = 88/262 (33%), Gaps = 14/262 (5%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHT 129 LI + + + S ++S + + K + ITT +R + E + Sbjct: 53 LIDNFIAAKKVEGCSDKSISYYKSTINNALVKI-KKEVVHITTDDLRGYLNQYQEESGAS 111 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 + + F W + Y+ +P + + K +T E ++Q + S Sbjct: 112 KVTVDNIRRILSSFFSWLEEENYIVKSPVRRIHKVKVGKTVKETYTDEALEQMRDHCS-N 170 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDG----FMKL 244 + + L +G+R + R + N I T K V K Sbjct: 171 IRDLALIDLLASTGMRVGELVRLNKNDIDYQNRECIVTGKGDKQRKVYFDARTKIHLQKY 230 Query: 245 LAMTPIGKETFFIN--NDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAG 301 + + F++ + ++ + I + + + K H R+ AT++ D G Sbjct: 231 VNSRTDTNDALFVSLLSPNNRLEISGVEIRLRRLGRELNIPKVHPHKFRRTLATMAIDKG 290 Query: 302 ATAHELMATYGWKTVDQAETYT 323 ++ G +++D Y Sbjct: 291 MPIEQVQHLLGHQSLDTTLQYA 312 >gi|298243894|ref|ZP_06967701.1| integrase family protein [Ktedonobacter racemifer DSM 44963] gi|297556948|gb|EFH90812.1| integrase family protein [Ktedonobacter racemifer DSM 44963] Length = 385 Score = 96.3 bits (238), Expect = 6e-18, Method: Composition-based stats. Identities = 65/383 (16%), Positives = 124/383 (32%), Gaps = 68/383 (17%) Query: 19 GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW----L 74 G+ Y R G++ +AL K+ TL L Sbjct: 18 GRFAGYIRLEGGKKKYFYGNTRKEVQDKVRAALN------------EKERGTLATGPNPL 65 Query: 75 ISEYRKSAHWGS-------LAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESR 126 + +Y W A + IS+ S +I + G R +T +HI++ + Sbjct: 66 LKDYL--PEWLETVCKPPYRAPQTYISYRSVISKHLIPEIGHLKIRNLTARHIQNLYTKK 123 Query: 127 ---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 P++ Q + A++ E V+ N + K + I P T+E+ + Sbjct: 124 IREGAKPATIEQMQKVLSGSLNSALQWEMVSTNVASKITTLKGEQREILPLTEEEAKVLL 183 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT--------- 234 + G + + GLR + +++ + ++ + T + + Sbjct: 184 ET-ARGHRLEGMILLGVTLGLRLGEITALKWKNIDLDAHTLTVKLTVSHVPSMSHVEKDP 242 Query: 235 --------VELPDGFMKLLA---------MTPIG--------KETFFINNDKQKMNATQF 269 ++LP+ ++ L +G K F+N + M A Q Sbjct: 243 KTRASRRKIDLPNAVVQTLRQHYDEQKAEAEKMGLSLSEWNPKGLVFLNKRRGYMYAGQT 302 Query: 270 SIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKG-- 325 F A +AG+ K H +R +ATI G + G ++ Y+ Sbjct: 303 RKEFYAILAQAGLPKMHFHDLRHSAATILLVKGVHPKMVQELLGHSSIVMTMNIYSHVMP 362 Query: 326 ADRIRLGIKNSRRISSVVDSDDP 348 + R + S + D P Sbjct: 363 SMRKEVAGIMDTIFSEKKEEDKP 385 >gi|238922801|ref|YP_002936314.1| phage integrase family protein [Eubacterium rectale ATCC 33656] gi|238874473|gb|ACR74180.1| phage integrase family protein [Eubacterium rectale ATCC 33656] Length = 363 Score = 96.3 bits (238), Expect = 6e-18, Method: Composition-based stats. Identities = 48/300 (16%), Positives = 95/300 (31%), Gaps = 30/300 (10%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHT 129 L + Y + G L + + + + ++ + +IT I + Sbjct: 64 LGAFVDVYFQDKA-GELKERTIKNKQYMIEAHVLPYFANKRMNEITPSDIIQWQNEMRAK 122 Query: 130 PSSAIQFLTS---MRVLFKWAVRQEYVAINPCLSVER-PKRKTEGIRPWTKEDMQQFKSF 185 S + LF A + NPC V++ K + + WTK + F Sbjct: 123 GYSQTYLRMVQNQITALFTHACNIYNLGNNPCKKVKKMGKADADKLNFWTKAEYDSFIRG 182 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQ-------------KTG 230 + S+ + FE L ++G R + + NN SI KT Sbjct: 183 IDKESRYFVIFEILFWTGCREGEMLALTKSDIDFENNQISITKTYYRTERRDIITTPKTE 242 Query: 231 TIIT-VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHG 288 I +++P+ K + N + A K + K+GV + H Sbjct: 243 QSIRVIDIPEFLKKEIEAYVNRCYGLPDNERLFPIVAEAVQHKLKRECAKSGVKQIRVHD 302 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSVVDSDD 347 +R + G + G + + TY L ++++ ++++ Sbjct: 303 LRHSHVAYLINQGVQPLIIKERLGHRDIKITLNTYGH------LYPNQQKKVADMLNATR 356 >gi|159039223|ref|YP_001538476.1| integrase family protein [Salinispora arenicola CNS-205] gi|157918058|gb|ABV99485.1| integrase family protein [Salinispora arenicola CNS-205] Length = 296 Score = 96.3 bits (238), Expect = 6e-18, Method: Composition-based stats. Identities = 47/285 (16%), Positives = 102/285 (35%), Gaps = 20/285 (7%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG-VESRKHTPSSA 133 I+ Y + + + S+ + Q+ D ++T + +++++ SSA Sbjct: 8 IASYERYHRARRTSPETVDSYVTTLRQLAGFCSGRDLAEVTRVDVEEFLIDAQEIGNSSA 67 Query: 134 I--QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW--SEG 189 + ++R ++W +E V NP + P ++ I + M Sbjct: 68 TVHKKFRNLRAFYRWCEVEEIVDSNPMARIAEPAVTSKPIPIVPADHMALLLKACGGKGF 127 Query: 190 SQPRLAFEFLLYSGL---RCSDSCRAGVQHLQNNIFSIKTQKTGTIIT-VE--------L 237 ++ R L+ R S+ + L + G I V + Sbjct: 128 TERRDTAMIRLWCEAGSPRVSEMVGITLDALDMRHDLVTLHGKGDKIRSVPFGAKTGQAI 187 Query: 238 PDGFMKLLAMTPIGK-ETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSAT 295 G+ E ++ + ++ + + +A + K + H +R +A Sbjct: 188 DRYLRVRSKHRDAGRLEALWLAERGGALTSSGAYQMLERRCEEAKIPKINPHKLRHLAAH 247 Query: 296 ISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340 + ADAG + + MA +GW + + Y + A R + +RR+S Sbjct: 248 LWADAGGSEGDAMALFGWSSAEMPRRYGRSAQVER-AQRAARRVS 291 >gi|238791773|ref|ZP_04635410.1| Phage integrase [Yersinia intermedia ATCC 29909] gi|238728877|gb|EEQ20394.1| Phage integrase [Yersinia intermedia ATCC 29909] Length = 263 Score = 96.3 bits (238), Expect = 7e-18, Method: Composition-based stats. Identities = 44/252 (17%), Positives = 82/252 (32%), Gaps = 35/252 (13%) Query: 99 FDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS--AIQFLTSMRVLFKWAVRQEYVAIN 156 I ++ D + +TTKHI + + + S A+ + + +F+ A+ ++ N Sbjct: 8 IGYINQEFEDKPLKAVTTKHIADFINTYVDSGKSSMAVNLRSVLSDVFREAIADGLISSN 67 Query: 157 PCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR----LAFEFLLYSGLRCSDSCRA 212 P + P K + R D F + Q R L+ L +G R D + Sbjct: 68 PVEATRTPSPKVKRERL----DYAAFCKIYEAAGQQRNWVQLSLALALITGQRRDDVRQL 123 Query: 213 GVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIG-----------KETFFINNDK 261 + + I KT I + L + T +G E ++ + Sbjct: 124 KRSDVHDGKLWIVQSKTKMQIAISL--SLRLEIMKTTVGEIIEKCLNNSKSEYLICSSSR 181 Query: 262 Q------KMNATQFSIWFKAKATKAGV-----NKSAHGVRKFSATISADAGATAHELMAT 310 + +NA + F + S H +R A+ +A Sbjct: 182 KSGRELGALNADSLTKAFVKALKATDLVYDISPPSFHEIR-SLASRLYEAEYGKEFAQKL 240 Query: 311 YGWKTVDQAETY 322 G K++ Y Sbjct: 241 LGHKSMKMTNVY 252 >gi|325922226|ref|ZP_08184012.1| tyrosine recombinase XerC subunit [Xanthomonas gardneri ATCC 19865] gi|325547296|gb|EGD18364.1| tyrosine recombinase XerC subunit [Xanthomonas gardneri ATCC 19865] Length = 305 Score = 96.3 bits (238), Expect = 7e-18, Method: Composition-based stats. Identities = 38/259 (14%), Positives = 78/259 (30%), Gaps = 23/259 (8%) Query: 89 VNSRISFESYFDQIIRKSGD------------FDYRKITTKHIRSGVESRKHTPSSAIQF 136 R + + G+ + + R +P S + Sbjct: 23 DAYRRDLAALVSWAAEQKGEDGAPLDAALLDSAQLTSAQLRQFVAAEHRRGLSPKSLQRR 82 Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---WSEGSQPR 193 L++ R + W ++ +A +P ++ PK + + ++ + G + R Sbjct: 83 LSACRSYYAWLLKHGRIAASPAAAMRAPKAPRKLPQVLDADEAVRLVEVPTDAPLGLRDR 142 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVELPD----GFMKLLAMT 248 E SGLR S+ C + L + G V + + L + Sbjct: 143 ALLELFYSSGLRLSELCALRWRDLDLESGLVMVLGKGEKQRLVPVGPHAITALREWLRDS 202 Query: 249 PIGKET-FFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAH 305 ET F ++ I K A + G+ + H +R A+ ++ Sbjct: 203 GGRAETHVFPGRAGGAISQRAVQIRIKQLAVRQGMFKDVHPHMLRHSFASHILESSGDLR 262 Query: 306 ELMATYGWKTVDQAETYTK 324 + G + + YT Sbjct: 263 GVQELLGHSDIATTQIYTH 281 >gi|291559720|emb|CBL38520.1| Site-specific recombinase XerD [butyrate-producing bacterium SSC/2] Length = 363 Score = 96.3 bits (238), Expect = 7e-18, Method: Composition-based stats. Identities = 49/338 (14%), Positives = 104/338 (30%), Gaps = 38/338 (11%) Query: 41 STFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD 100 F + A+ +T R I +LI E + + + +V S D Sbjct: 26 PPFAKEFFRAIDSTTQVRTRIAYAYDLRVFFHFLIDE---NPAYRNYSVLDFKV--SDLD 80 Query: 101 QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160 +I + + + ++T + ++++R + + +++ + NP L Sbjct: 81 KIESVDLEEYMEYLKVYISEEQHKHMQNTEQGVFRKMSALRSFYGYFYKRQLIEKNPTLL 140 Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSEG----------------SQPRLAFEFLLYSGL 204 V+ PK + + I +++ F G + LL +G+ Sbjct: 141 VDMPKIREKEIIRLEADEVASLLDFVEHGGDHLTGQKLAYYEKTKERDLAIITLLLGTGI 200 Query: 205 RCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGK---------- 252 R S+ V + NN + +K +TV + L G Sbjct: 201 RVSELVGLNVDDVDFRNNGLHLI-RKGRKEMTVYFGNEVADALEQYIEGSRKLIIPKEGH 259 Query: 253 -ETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMA 309 + F + ++++ K A + + H +R T + + Sbjct: 260 EDALFYSMQRRRIGVQAVQNLVKKYAKEVTPLKKITPHKLRSTYGTALYQETDDIYLVAE 319 Query: 310 TYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSVVDSD 346 G V+ + Y +D R + V D Sbjct: 320 VLGHSDVNTTRKHYAAMSDTRRRQAAGKVVLRESVSHD 357 >gi|218892832|ref|YP_002441701.1| putative bacteriophage integrase [Pseudomonas aeruginosa LESB58] gi|218773060|emb|CAW28872.1| putative bacteriophage integrase [Pseudomonas aeruginosa LESB58] Length = 338 Score = 96.3 bits (238), Expect = 7e-18, Method: Composition-based stats. Identities = 46/313 (14%), Positives = 100/313 (31%), Gaps = 18/313 (5%) Query: 19 GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEY 78 G+ + G+R R + + + + ++ N ++ L LI + Sbjct: 9 GRWLADVEPIKGKRFRKRF-KTKGEAQRFEAMVRTKHARQREWNPVQQDKRLLSELIERW 67 Query: 79 RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQ 135 ++ S ++ I + GD ++ TT + + + P S Sbjct: 68 Y---ELHGHSITSGRRRKNLLLLIASRLGDPVGQRFTTADLVAFRKRELEEGALPRSINV 124 Query: 136 FLTSMRVLFKWAVRQEYVA-INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ-PR 193 + ++ +F R + NP ++ K + + +K+ + S + S P Sbjct: 125 RYSYLKTVFTELRRLGDIDYPNPLDRLKPLKPQQSVVSFLSKDQVAVLVSALRDYSTFPH 184 Query: 194 LAF--EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIG 251 LA E L +G R S++ + +++ K+ + +V + L G Sbjct: 185 LALISEVCLATGARWSEAQGLTLPMVRDGSVVFSNTKSKRVRSVPISTDLQARLEKYFAG 244 Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATY 311 + F F+ K + H +R A+ G L Sbjct: 245 RNRF-------PSCREAFARMVKRCGIVLPRGQCTHVLRHTFASHFMMNGGNILALKEIL 297 Query: 312 GWKTVDQAETYTK 324 G +++ Y Sbjct: 298 GHSSLNMTMRYAH 310 >gi|323152607|gb|EFZ38884.1| integrase [Escherichia coli EPECa14] Length = 371 Score = 96.3 bits (238), Expect = 7e-18, Method: Composition-based stats. Identities = 42/278 (15%), Positives = 87/278 (31%), Gaps = 30/278 (10%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--K 127 T+ I Y+ ++ N+ + + I K G +ITT+HI ++ Sbjct: 75 TMADWIERYKTILIRRKVSRNTYKIRVNQLETIKEKLGGVLLTEITTRHIAEFLDLWIEG 134 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF----K 183 + A + + +F+ A+ + ++ NP PK R ++ + + Sbjct: 135 GKNTMAGSMRSVLSDMFREAIVEGRISQNPVTPTRAPKIVVTRERL----KLKTYNCIRE 190 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243 + + LA + L +G R D + ++ I+ KTG +I + L Sbjct: 191 AADQLPTWFPLAMDLALVTGQRREDITNMRFSEIYDDRLHIRQIKTGMMIAIPLSLSLPV 250 Query: 244 LLAMTPI--------GKETFFINNDKQKMN------ATQFSIWFKAKATKAGV-----NK 284 + + I+ +K + + F A G+ Sbjct: 251 AGLRLGTVVEQCRMVSRGDYLISAGIRKNSPDGSIHPDGLTKKFVAARKLTGIQFSENPP 310 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 + H +R A G + + Y Sbjct: 311 TFHEIR-SLAGRLYKETCGEEFAQRLLGHTSEKTTKMY 347 >gi|255264826|ref|ZP_05344168.1| site-specific tyrosine recombinase XerC [Thalassiobium sp. R2A62] gi|255107161|gb|EET49835.1| site-specific tyrosine recombinase XerC [Thalassiobium sp. R2A62] Length = 304 Score = 96.3 bits (238), Expect = 7e-18, Method: Composition-based stats. Identities = 45/289 (15%), Positives = 93/289 (32%), Gaps = 29/289 (10%) Query: 71 LKWLISEYRKS-AHWGSLAVNSRISFESYFDQIIR--------KSGDFDYRKITTKHIRS 121 L+ + + S A + N+ ++++ + G +I +R+ Sbjct: 6 LRDALEGWLASTAALNGTSENTTKAYQADVAGFLAFMTVHHGGAQGLGPISQICVSDMRA 65 Query: 122 GVESRKHTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 + S + +A + L++++ + W +E LS PK + + RP ++ Sbjct: 66 WMASERGRGVAARSLARSLSAVKTFYCWFAEREGFEPTAVLSTRAPKFQKKLPRPLAEDA 125 Query: 179 -------MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231 ++ + ++ L GLR S++ + + K G Sbjct: 126 ARAMIDTVELQAAEPWVAARDMAVMTLLYGCGLRISEALGLCGRDVPLPQTLRILGKGGK 185 Query: 232 IITVELPDGFMKLLAMTPIG-------KETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284 V + +A F +N +A + G+ Sbjct: 186 ERVVPVIPQACDAVAAYLRQCPYPVEPDAPLFRGVRGGALNPRAIQKVTEAARLQLGLPA 245 Query: 285 SA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 +A H +R AT AG + G ++ +TYT D RL Sbjct: 246 TATPHAMRHSFATHLLSAGGDLRAIQELLGHASLSTTQTYT-AVDTARL 293 >gi|158522964|ref|YP_001530834.1| integrase family protein [Desulfococcus oleovorans Hxd3] gi|158511790|gb|ABW68757.1| integrase family protein [Desulfococcus oleovorans Hxd3] Length = 409 Score = 96.3 bits (238), Expect = 7e-18, Method: Composition-based stats. Identities = 44/255 (17%), Positives = 84/255 (32%), Gaps = 18/255 (7%) Query: 101 QIIRKSGDFDYRKITTKHIRS---GVESRKHTPSSAIQFLTSMRVLFKWAVRQE-YVAIN 156 + G+ + KI H+ + +K + L R +F A ++ Y N Sbjct: 137 HLAETIGNLPFGKIAAFHVERVKKAMADKKKAGRTIQYALQVTRQVFNMARKRGVYTGEN 196 Query: 157 PCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP-RLAFEFLLYSGLRCSDSCRAGVQ 215 P +V+ PK +R + ++ ++ + S L+SGLR + + Sbjct: 197 PTSAVKWPKLDNMKMRYLSIDEAEKLFDALAAKSHNLHDMALLSLHSGLRFGEIAKLTWS 256 Query: 216 --HLQNNIFSIKTQKTGTIITVELPDGFMKLL-AMTPIGKETFFINNDKQKMNATQFSIW 272 + + +I KTG+ L E F + + S Sbjct: 257 CVNWKAGTLAILDAKTGSRTAYLTTRAKAMLKNREEGAPNELIFQKRSGLDGSIARASKT 316 Query: 273 FKAKATKAGVNK---------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 F + G+N+ + H +R AT ++ + + G T + Y Sbjct: 317 FSRVVKELGLNQGITDRKQKVTFHTLRHSYATHLYESTHDLYLTQKSLGHTTSTMTQRYA 376 Query: 324 K-GADRIRLGIKNSR 337 K +R+R G Sbjct: 377 KMTENRLREGSAALE 391 >gi|160881628|ref|YP_001560596.1| integrase family protein [Clostridium phytofermentans ISDg] gi|160430294|gb|ABX43857.1| integrase family protein [Clostridium phytofermentans ISDg] Length = 443 Score = 96.3 bits (238), Expect = 7e-18, Method: Composition-based stats. Identities = 54/403 (13%), Positives = 125/403 (31%), Gaps = 75/403 (18%) Query: 4 SLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS 63 SL LP +T+ + Y + G R L L + + ++ Sbjct: 53 SLNLPKGITRCSDGRYQARYTY---EGHRYCLYGRDVKELEER----LNNAKYEIQHGIY 105 Query: 64 PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFES-YFDQIIRKSGDFDYRKITTKHIRS- 121 +++ +L + ++ + S+E Y + + G + I +HI+ Sbjct: 106 AKEERISLNAWYETWINEYKSMTVKQGTVESYECMYLYYVKPELGKRLIKDIRGEHIQKL 165 Query: 122 --GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK-TEGIRPWTKED 178 + ++ S+ + +FK A++ E + NP P+ + + R T ++ Sbjct: 166 YNDLSRNGYSKSTISLIHVLLGAMFKQALKNELIKKNPVDFTTLPRAERKKERRVLTLKE 225 Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT--------- 229 + + G + L +GLR + + N + + T Sbjct: 226 QEILLKEIT-GHELEPVVRLSLATGLRVGEVTGLEWCDVDFNKKEVTVRGTLKCTRKGME 284 Query: 230 ---------GTIITVELPDGFMKLLAM----------------TPIGK--ETFFINNDKQ 262 + ++ L D +L PI + F+ D + Sbjct: 285 YYKDTPKTDKSTRSIPLLDNMELMLKRYRIIQKEHKLSMGIDWKPIEGLEDLVFLREDGK 344 Query: 263 KMNATQFSIWFKAKATKAGVNK---------------------SAHGVRKFSATISADAG 301 + I + G+N+ + H +R AT + + G Sbjct: 345 PFS--GQHIRQQLVHIVDGINEKYYSKKSIRQEKLLEEKFDYFTPHALRHTFATRALENG 402 Query: 302 ATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSVV 343 + G ++ + YT + + + +++ S++ Sbjct: 403 IPPKVVQEILGHSSITMTLDLYTHVLPQTK--AQEMKKLESLI 443 >gi|320161781|ref|YP_004175006.1| putative site-specific recombinase [Anaerolinea thermophila UNI-1] gi|319995635|dbj|BAJ64406.1| putative site-specific recombinase [Anaerolinea thermophila UNI-1] Length = 288 Score = 96.3 bits (238), Expect = 7e-18, Method: Composition-based stats. Identities = 48/270 (17%), Positives = 93/270 (34%), Gaps = 30/270 (11%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK-- 127 T+K L+ + +S G ++ ++ + Y ++ GD + ITT + + + Sbjct: 8 TVKELVDVFLESQK-GFISDSTLRWYVFYLRPLVAHLGDRETNSITTSDLINLFHLMRTD 66 Query: 128 -HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 P + F+ + LF+WAV + Y+A+NP + RP + ED+ + Sbjct: 67 DREPYTLFNFIRGWKRLFRWAVDEGYIAMNPAKKLRRPPLPQKSPAGIQAEDLSKMLDAA 126 Query: 187 SEGSQPRLAFEFLLY---SGLRCSDSCRAGVQHLQNN---IFSIKTQKTG---------T 231 S+ P +L+ +G+R V L N ++ + G + Sbjct: 127 SKTGTPERDLALVLFVADTGVRLGGVAGLTVDRLDINKRRAIVLEKGRGGQKERVVFFSS 186 Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGV 289 + L + K + F+ + FK A K+ + + H Sbjct: 187 RTAIALENWLEK---RGETEDQRVFL------LKPNGIYQLFKRLARKSEITGKWNPHSF 237 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQA 319 R A G + + G V Sbjct: 238 RHAYARKLLAEGVSIGIVSHLMGHSNVQVT 267 >gi|256841231|ref|ZP_05546738.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|256737074|gb|EEU50401.1| conserved hypothetical protein [Parabacteroides sp. D13] Length = 354 Score = 96.3 bits (238), Expect = 7e-18, Method: Composition-based stats. Identities = 43/290 (14%), Positives = 97/290 (33%), Gaps = 35/290 (12%) Query: 76 SEYRKSAHWGSLAVNSRISFESYFDQIIRK--------SGDFDYRKITTK---------- 117 +Y+ A + + R + + G + +I Sbjct: 70 DKYKLKADFL---EHYRKQLRKHDQKWEFVYLHFNNFVHGKCTFEEIDIDLCNKFREYLL 126 Query: 118 HIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177 + + T +SA + ++ R K R + N +++ + + + + Sbjct: 127 TAKKLRRKGRITRNSASGYWSTFRGFLKILYRNGMIKTNVNDFLDKIETEDVVKEYLSVD 186 Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL-----QNNIFSIKTQKTGTI 232 ++ + + ++A F + LR SD + + I TQK Sbjct: 187 ELYKLAETPCKKPILKIASLFSCMTSLRISDILALCWEDIVDYSAGGKCVHIITQKNKAE 246 Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290 + + + + L+ + K F + + + I K AG+ K + H R Sbjct: 247 DIIPISEEALGLIGYSSEKKGLVF-----KGLMRSWTQIPMKEWIRSAGITKNITFHSYR 301 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340 + AT+ A AG + + K++ + Y K D + + S++I+ Sbjct: 302 RTFATLQAAAGTDIRTIQSIMAHKSITTTQRYIKVVDANKR--EASKKIT 349 >gi|257055038|ref|YP_003132870.1| tyrosine recombinase XerC subunit [Saccharomonospora viridis DSM 43017] gi|256584910|gb|ACU96043.1| tyrosine recombinase XerC subunit [Saccharomonospora viridis DSM 43017] Length = 329 Score = 96.3 bits (238), Expect = 7e-18, Method: Composition-based stats. Identities = 30/229 (13%), Positives = 67/229 (29%), Gaps = 21/229 (9%) Query: 117 KHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK 176 + + + ++ + + S R WA R+ + +P + + P+ Sbjct: 83 RAWLARQHEAGCSRATVARRVASARTFTAWAYRRGLLPSDPGIRLASPRPHRRLPGVLRM 142 Query: 177 EDMQQFKSF--------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228 ++ + + E L +G+R S+ C + + + ++ Sbjct: 143 DEATELMRVSEAGTATGHPVALRDHALIELLYATGVRISELCGLDIDDVDFDRRVVRVLG 202 Query: 229 TGTIITV-----ELPDGFMKLLA------MTPIGKETFFINNDKQKMNATQFSIWFKAK- 276 G + L T F+ ++++ Sbjct: 203 KGRKQRMVPFGLPSERALRLWLRQGRPEVATADSGAALFLGARGKRVDPRTVRRVVHDAV 262 Query: 277 -ATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 A + HG+R +AT D GA + G T+ + YT Sbjct: 263 AAVPGAADIGPHGLRHSAATHMLDGGADLRSVQELLGHATLATTQLYTH 311 >gi|189467538|ref|ZP_03016323.1| hypothetical protein BACINT_03928 [Bacteroides intestinalis DSM 17393] gi|189435802|gb|EDV04787.1| hypothetical protein BACINT_03928 [Bacteroides intestinalis DSM 17393] Length = 333 Score = 96.3 bits (238), Expect = 7e-18, Method: Composition-based stats. Identities = 48/244 (19%), Positives = 90/244 (36%), Gaps = 20/244 (8%) Query: 105 KSGDFDY---RKITTKHIRSGVESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPC 158 GD + +K + + + P +SA + ++ R L K A R ++ N Sbjct: 92 TFGDVNVDLCKKFREYLLNAKQLKHSNRPISLNSASGYYSTFRGLLKIAYRDKWFRENIN 151 Query: 159 LSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL- 217 +++ + + T ++++Q + + + A F +GLR SD + Sbjct: 152 DYLDKIEPQDVKKEYLTLDEVKQLAATPCDIPVLKAASLFACLTGLRISDILNLQWEDFT 211 Query: 218 ----QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWF 273 Q I+TQKT T T+ + + L TP + F + + + + Sbjct: 212 IAPDQGYCLRIRTQKTQTEATLPISYEAYE-LCGTPGTGKVF------KDLKRSMINYPL 264 Query: 274 KAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 K+ KAG+ K + HG R A I G + + K V + Y + + Sbjct: 265 KSWLKKAGITKPITFHGFRHSYAVIQISLGTDIYTVSKMLTHKNVSTTQIYADLVNSKKR 324 Query: 332 GIKN 335 N Sbjct: 325 ETAN 328 >gi|293393584|ref|ZP_06637894.1| phage integrase family site-specific recombinase [Serratia odorifera DSM 4582] gi|291423919|gb|EFE97138.1| phage integrase family site-specific recombinase [Serratia odorifera DSM 4582] Length = 335 Score = 96.3 bits (238), Expect = 7e-18, Method: Composition-based stats. Identities = 50/305 (16%), Positives = 98/305 (32%), Gaps = 21/305 (6%) Query: 26 RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWG 85 R G R R E+ Y+ A R L Y ++ G Sbjct: 29 RNGKRIRRRFEKKQEAVLFERYVLANADKKEWLGASVDRRTLSELLDTWWLLYGQTQENG 88 Query: 86 SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI---RSGVESRKHTPSSAIQFLTSMRV 142 + + + ++ IR GD +++ + I R + ++ + + Sbjct: 89 EIE-------KRHLNKTIRALGDPAVNRLSKRTIAQHRGQRLEDGISAATINRDVYRFSG 141 Query: 143 LFKWAVR-QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY 201 +F ++ E+ NPC +E K + K ++ + + + G R+A L Sbjct: 142 MFSTLIKLDEFRKENPCKGLEPLKETPPAMTYLAKSEISRLLNTLT-GDDRRVAL-LCLS 199 Query: 202 SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK 261 +G R +S + + + + K G TV + + + + G F Sbjct: 200 TGARWGESSTLRGEQVNHGRVTFLKTKNGKKRTVPISEELEGEIKTSDTG--PLF----- 252 Query: 262 QKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321 K++ F K ++ H +R A+ G L G ++ Q Sbjct: 253 -KVDYENFCERLKQVKPDLPRGQATHVLRHTFASWFMMNGGNIIALQQILGHASIQQTMV 311 Query: 322 YTKGA 326 Y A Sbjct: 312 YAHLA 316 >gi|261344170|ref|ZP_05971814.1| site-specific recombinase, phage integrase family [Providencia rustigianii DSM 4541] gi|282567765|gb|EFB73300.1| site-specific recombinase, phage integrase family [Providencia rustigianii DSM 4541] Length = 338 Score = 96.3 bits (238), Expect = 7e-18, Method: Composition-based stats. Identities = 45/316 (14%), Positives = 98/316 (31%), Gaps = 35/316 (11%) Query: 28 GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSL 87 +G+R+R A+ L + ++ ++ ++ L L+ + ++ + Sbjct: 20 RNGKRVR-KLFTTKGEAIAFERYLLEESQEKPWLG-EKQDKRKLTELVETWFRA---HGI 74 Query: 88 AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH------------TPSSAIQ 135 + +S GD + K E R TP + Sbjct: 75 TLGDGKKRKSSMLFACEAMGDPLAIEFNAKIFSIYREKRLSGEIVRTDRLKTVTPRTVNL 134 Query: 136 FLTSMRVLFKWAVR-QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194 L R +F +R E+ +P V K + + + ++++ S + + L Sbjct: 135 ELAYFRAMFNELIRLDEWTKEHPLAKVRSYKTDEQEMGFLSDDEIRLLLSECEKSTSKDL 194 Query: 195 A--FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGK 252 + L +G R S++ ++NN + K ++ + D L Sbjct: 195 IHVVKICLATGARWSEAENLTATQIRNNTITYVRTKGKRNRSIPISDELANELPKGQGNN 254 Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGVNK----SAHGVRKFSATISADAGATAHELM 308 F F++ + G+ S+H +R A+ +G L Sbjct: 255 RLF-----------KSCYSAFRSALERTGIELPKQQSSHVLRHTFASHFMMSGGNILVLQ 303 Query: 309 ATYGWKTVDQAETYTK 324 G + Y+ Sbjct: 304 RILGHTDIKMTMRYSH 319 >gi|9910723|sp|P76168|INTQ_ECOLI RecName: Full=Putative lambdoid prophage Qin defective integrase Length = 385 Score = 96.3 bits (238), Expect = 7e-18, Method: Composition-based stats. Identities = 45/317 (14%), Positives = 97/317 (30%), Gaps = 64/317 (20%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK-ITTKHIRSGVESR-- 126 T+K L ++ +A S ++ + I+ G+ + I + + + Sbjct: 39 TIKELAEKFLALKE-TEVAKTSLNTYRAVIKNILSIIGEKNLASSINKEKLLEVRKELLT 97 Query: 127 --------------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172 + + ++T++ +F++ V Y+A NP + K Sbjct: 98 GYQIPKSNYIVTQPGRSAVTVNNYMTNLNAVFQFGVDNGYLADNPFKGISPLKESRTIPD 157 Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIK----- 225 P ++E+ + Q + + +Y+G+R + C G + + N I+ Sbjct: 158 PLSREEFIRLIDAC-RNQQAKNLWCVSVYTGVRPGELCALGWEDIDLKNGTMMIRRNLAK 216 Query: 226 --------TQKTGTIITV--ELPDGFMKLLAMTPIGKETFF------------------- 256 T +I + D + +T + KE Sbjct: 217 DRFTVPKTQAGTNRVIHLIKPAIDALRSQMTLTRLSKEHIIDVHFREYGRTEKQKCTFVF 276 Query: 257 -------INNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELM 308 + N + A +AG+ ++ ++ R A S AGA + Sbjct: 277 QPEVSARVKNYGDHFTVDSIRQMWDAAIKRAGLRHRKSYQSRHTYACWSLTAGANPAFIA 336 Query: 309 ATYGWKTVDQA-ETYTK 324 G + Y K Sbjct: 337 NQMGHADAQMVFQVYGK 353 >gi|325263946|ref|ZP_08130679.1| site-specific recombinase, phage integrase family [Clostridium sp. D5] gi|324030984|gb|EGB92266.1| site-specific recombinase, phage integrase family [Clostridium sp. D5] Length = 355 Score = 96.3 bits (238), Expect = 7e-18, Method: Composition-based stats. Identities = 43/281 (15%), Positives = 90/281 (32%), Gaps = 43/281 (15%) Query: 100 DQIIRKSGDFDYRKITTKHIRSGVESRK-----------HTPSSAIQFLTSMRVLFKWAV 148 + + + D +I I E K +T + ++++R + + Sbjct: 71 NYTVDQFTVKDLERIEPVDIEEYQEYLKVYKGSEDKQITNTEKGLARKMSALRSFYAYFF 130 Query: 149 RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG----------------SQP 192 + + + NP L V+ PK + I +++ + G ++ Sbjct: 131 KHQVIEKNPTLLVDMPKLHDKAIIRLDTDEVASLLEYVEHGGDDLTGQRKVYFEKTKNRD 190 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLL------ 245 LL +G+R S+ +Q + N T+K G + V + L Sbjct: 191 LAILTLLLGTGIRVSECVGLDIQDVDFKNNGVKVTRKGGNEMVVYFGEEVENALKMYLYT 250 Query: 246 -----AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISA 298 A P + F++ ++++ K A + NK + H +R T Sbjct: 251 TRKSTAPLPGHENALFLSTQRKRIGVQAVENMVKKYARQITPNKKITPHKLRSTYGTALY 310 Query: 299 DAGATAHELMATYGWKTVDQA-ETYTK-GADRIRLGIKNSR 337 + + G K V+ + Y +R R + Sbjct: 311 KETGDIYLVADVLGHKDVNTTKKHYAAIDENRRRQAAGAVK 351 >gi|53712520|ref|YP_098512.1| tyrosine type site-specific recombinase [Bacteroides fragilis YCH46] gi|52215385|dbj|BAD47978.1| tyrosine type site-specific recombinase [Bacteroides fragilis YCH46] Length = 419 Score = 96.3 bits (238), Expect = 7e-18, Method: Composition-based stats. Identities = 35/254 (13%), Positives = 81/254 (31%), Gaps = 22/254 (8%) Query: 95 FESYFDQIIRKSGD-FDYRKITTKHIRSGVESRKHTP-----------SSAIQFLTSMRV 142 + + + +G+ + KI + P ++A + + + Sbjct: 153 WRRTHELLKIFAGEYLPFSKIDNRLAEDFRMFMLSAPCGGKKSGTVSQNTAATYFSIFKA 212 Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS 202 K A +Y+ ++ ++ + + T E++ S E + + F + Sbjct: 213 ALKQAFIDDYLTVDLSAKIKGIQEQESRREYLTVEELNMLASTPCERDVLKRSALFSALT 272 Query: 203 GLRCSDSCRAGVQHLQNN----IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFIN 258 GLR D + + + + QKT + + + + ++L ++ F + Sbjct: 273 GLRHCDIQKLRWKEISMDGNQARLHFTQQKTKGVEYMPISEQALQLCGERRKPEQLVFED 332 Query: 259 NDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTV 316 + W AG+ K H R AT+ + + + G V Sbjct: 333 LPDPAWISKPLKKWV----ESAGIKKKITYHCFRHTFATLQLSSSTDIYTVSKMLGHTNV 388 Query: 317 DQAETYTKGADRIR 330 + Y K D + Sbjct: 389 KTTQIYAKVVDEKK 402 >gi|293572845|ref|ZP_06683798.1| DNA integration/recombination/invertion protein [Enterococcus faecium E980] gi|291607092|gb|EFF36461.1| DNA integration/recombination/invertion protein [Enterococcus faecium E980] Length = 380 Score = 96.3 bits (238), Expect = 7e-18, Method: Composition-based stats. Identities = 55/309 (17%), Positives = 114/309 (36%), Gaps = 40/309 (12%) Query: 50 ALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGD 108 AL + E ++KP T K + + ++ ++ + E F + ++ + GD Sbjct: 48 ALARLQSEYENNLLKKEKPKTYKDVYDLWMTEYK-RTVRGSTLLKTERIFKNHVLEELGD 106 Query: 109 FDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168 +IT I+ ++ + +A + + ++FK+AVR + NP ++ +PKR+ Sbjct: 107 IYISEITPIKIQKLMDKWANKYDTAPKMMNYTGLVFKYAVRFGIIESNPTDAIRKPKRRK 166 Query: 169 EGIRPWTKEDMQQFKSFWSE-----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ----- 218 + D +Q K F + + F L +G+R ++ + + Sbjct: 167 KTTTEEPFYDKKQLKLFLDVLYEQPNIKVQAFFRLLAMTGMRKQEAGALEWRDIDFKAKT 226 Query: 219 ----------NNIFSIKTQKT-GTIITVEL----PDGFMKLLAMTPIGKETFFI---NND 260 N I T KT G+ + + D ++ + + + I N Sbjct: 227 VNIYKAVTRTANGLEIDTTKTVGSSRIISIDQGTLDKLLEWKEVALPPSDDWLIFGQTNA 286 Query: 261 KQK---MNATQFSIWF------KAKATKAGVNK-SAHGVRKFSATISADAGATAHELMAT 310 K M+ W K K + + + HG R A++ + GA+ E+ Sbjct: 287 KNPHDIMSLDTSRKWLLNIQDQMDKKQKKKLPRITVHGFRHTQASLLIEMGASLKEVQFR 346 Query: 311 YGWKTVDQA 319 G + + Sbjct: 347 LGHEDIQTT 355 >gi|190571372|ref|YP_001975730.1| site-specific recombinase, phage integrase family [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|213018771|ref|ZP_03334579.1| site-specific recombinase, phage integrase family [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|190357644|emb|CAQ55088.1| site-specific recombinase, phage integrase family [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|212995722|gb|EEB56362.1| site-specific recombinase, phage integrase family [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 328 Score = 96.3 bits (238), Expect = 7e-18, Method: Composition-based stats. Identities = 51/310 (16%), Positives = 105/310 (33%), Gaps = 53/310 (17%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIRSGVE---- 124 + L+SE S N+ S+ S Q+ + G + +I+ V Sbjct: 19 IDALVSE-------KSSTQNTLESYRSDLHQLEKFLLEGGTTLVGASKANIKDYVNFLRT 71 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPC----LSVERPKRKTEGIRPWTKEDM- 179 +K+ SS + +++++ +K + NP + PK + + +++ Sbjct: 72 QKKYKTSSISRKISAIKNFYKCLFNDGIIDFNPAPANDNELRNPKVSRPLPKYLSVQEIF 131 Query: 180 ---QQFKSFW----SEGSQPRLA--FEFLLYSGLRCSDSCRAGVQHL--------QNNIF 222 + K E S RL + L SG+R S+ + + + Sbjct: 132 LLMETVKKSASGSNKEISSKRLCAILDILYSSGMRVSELINMKLCEVLHLVNGNGKEGYI 191 Query: 223 SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK-----------QKMNATQFSI 271 IK K+ + + ++ L ++ NN K + + + Sbjct: 192 IIK-GKSSRERQILFNEQALQSLKNYLSIRDNLLPNNKKSDWLFPGDKPNKPITRQRVGQ 250 Query: 272 WFKAKATKAGVNK---SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 K A K +++ S H +R AT ++GA + G + + YT A+ Sbjct: 251 LIKELARKCDIDENKISPHVIRHSLATHLLNSGANIVLIQKILGHTNLSTTQIYTHIANE 310 Query: 329 I---RLGIKN 335 +L + Sbjct: 311 KLKDKLADSH 320 >gi|160894953|ref|ZP_02075727.1| hypothetical protein CLOL250_02503 [Clostridium sp. L2-50] gi|156863384|gb|EDO56815.1| hypothetical protein CLOL250_02503 [Clostridium sp. L2-50] Length = 583 Score = 96.3 bits (238), Expect = 7e-18, Method: Composition-based stats. Identities = 50/341 (14%), Positives = 109/341 (31%), Gaps = 38/341 (11%) Query: 10 FVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69 F+ + TR I+Y + + R+ + + P+ + Sbjct: 233 FIETDETRWDATIWYLERFRIAKERINQSDSIE------------KISFQEVLQPKNRL- 279 Query: 70 TLKWLISEYRK-SAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH 128 L+ EY K G LA+++ +++ + + K I +++ ++ Sbjct: 280 ----LLQEYMKYEIGIGELALSTVYERFRTIRNFLQEISELEVTKCDASLIDVYLKNLQN 335 Query: 129 TPSSAIQF---LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED---MQQF 182 A F ++ ++ K+ + Y+ P + +++ + E+ M+ Sbjct: 336 GAMGAKTFNTNVSGIQFFMKFLEVKGYIKKVPFYASYYLEKQIPVHHDRSVEEDVYMEII 395 Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVELP 238 ++ R+ F L GLR S+ C + + K V +P Sbjct: 396 QNLSQFPEHLRMMFLHLWCVGLRISEVCTLKGDAYYIQNGDCWMKVYQVKMKNYKRVPIP 455 Query: 239 DGFMKLLAMT----PIGKETFFINND-KQKMNATQFSIWFKAKATKAGVNK-----SAHG 288 +L+ + P KE + N + + F K ++ G+ +H Sbjct: 456 VTLYRLMQVYLKKHPTEKEAYIFRNRKGGAFSKSTFMGQMKKYCSQIGIQNGEYIFKSHD 515 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 R AT + G + + G + Y R Sbjct: 516 YRHTVATNFYEHGVSIQSIRDYLGHMFEEMTMQYIDYMPRK 556 >gi|314955500|gb|EFS99903.1| site-specific recombinase, phage integrase family [Propionibacterium acnes HL027PA1] Length = 420 Score = 96.3 bits (238), Expect = 7e-18, Method: Composition-based stats. Identities = 58/373 (15%), Positives = 116/373 (31%), Gaps = 51/373 (13%) Query: 23 YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSA 82 +Y + G +R+R + L PR TL ++ + + Sbjct: 27 FYDKNGTKQRVRGRGATRAEATKRLNKNLRQRIDGTRTATGPRGGL-TLNQWVNIWLATK 85 Query: 83 HWGS-LAVNSRISFE-SYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA-IQFLTS 139 + + + Y I K G +++T + I+ + + + + + Sbjct: 86 QASEQMKPQTAQQHKIRYKQWIAPKLGSRPVKRLTAEEIQEVIAAGAQQGHAIPVNIFKT 145 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEG-------IRPWTK--EDMQQFKSFWSEGS 190 M AV+ V +NP + P++++ I W++ + M ++ + Sbjct: 146 MNAALNSAVKAGEVDLNPMKQLTPPRQRSAAGEKDTAHIEYWSRIMDKMCKWLAQPECEL 205 Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQ---------------KTGTII 233 R + GLR ++ N +IK Q KTG Sbjct: 206 HDRYTLTIAMLLGLRRAELLGLTWDCFDECMNKLTIKQQLMRQNDGSYIIQNSTKTGKNR 265 Query: 234 TVELPDGFMK---------LLAMTPIGKETFFINNDKQKMNATQFSIWFKA----KATKA 280 T+ LP+ + + L A P F+ + + ++ ++ K Sbjct: 266 TLMLPERWKEAFLLQRQKSLTAAAPEWNNLVFLTPAGGPITYSMYNKLWRNTIVTYMAKE 325 Query: 281 GVNKSA--H-----GVRKFSATISADAGATAHELMATYGWKTVDQAETYT-KGADRIRLG 332 G H RK A+ A G M+ G + YT AD+ R Sbjct: 326 GQEWKEEQHYWRPPTCRKMCASWLAWGGVDIQTAMSILGHSSEAMTLYYTIINADQQRKA 385 Query: 333 IKNSRRISSVVDS 345 ++ + + Sbjct: 386 LEGLSNVYEHHNV 398 >gi|298249757|ref|ZP_06973561.1| integrase family protein [Ktedonobacter racemifer DSM 44963] gi|297547761|gb|EFH81628.1| integrase family protein [Ktedonobacter racemifer DSM 44963] Length = 297 Score = 96.3 bits (238), Expect = 7e-18, Method: Composition-based stats. Identities = 41/275 (14%), Positives = 96/275 (34%), Gaps = 29/275 (10%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131 LI+ + A ++ ++ + + + G ++ I ++ S + Sbjct: 17 ANLINTWL-----HDKAQTTQRAYRRFAYEYLTALG-KPFQMIAPLELKQYAMSLEGDAG 70 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK-RKTEGIRPWTKEDMQQFKSFWSEGS 190 + + +++ L+ +A + Y+ +N +E PK R+ R +++M + + Sbjct: 71 TVAYRVNALKSLYSYATKLGYIQVNLGELLEAPKVRQKLAERILEEDEMLRLVAG-ETNP 129 Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQ----NNIFSIKTQKTGTIITVELPDGFMKLLA 246 + + ++GLR S+ +++ K V + ++ L Sbjct: 130 RNHATLRLMYHAGLRVSEIVSLKWENIHKTKSGGATLDVWGKGEEQRYVPISPSMLEELE 189 Query: 247 MTP----------IGKETFFINNDKQKMNATQFSIW-----FKAKATKAGV--NKSAHGV 289 P +G + + K K + + A + G+ N S H Sbjct: 190 ALPGRLPLLTRSTVGNDRYVFQGRKSKGGSIPLDTRHVHRIVQEAAKRVGIEDNVSPHWF 249 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 R +A+ S D GA + + G K++ Y Sbjct: 250 RHANASHSLDNGAPISVVQQSLGHKSLATTMKYLH 284 >gi|229051739|ref|ZP_04195198.1| Phage integrase [Bacillus cereus AH676] gi|228721643|gb|EEL73128.1| Phage integrase [Bacillus cereus AH676] Length = 387 Score = 96.3 bits (238), Expect = 7e-18, Method: Composition-based stats. Identities = 50/354 (14%), Positives = 105/354 (29%), Gaps = 48/354 (13%) Query: 13 KERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLK 72 R R K Y R + + A K + + T Sbjct: 3 SFRKRKDKWEYRIRYKEMGKYKETSKGGFKTKKEAQLAAAKVEEKLATGGNLKDSKITFN 62 Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131 + E+ + G++A + + +E I+ G+ + +T + + S Sbjct: 63 EYLYEWLNTYKKGNVAPRTYMVYEKNIRLHILPAFGELRLKDLTRIKYQKFINGLMEKYS 122 Query: 132 SAIQFLTSMRVLFKWAVR-----QEYVAINPCLSVE----RPKRKTEGIRPWTKEDMQQF 182 + + ++ V A+ + NP ++ R K + I+ + +++QQF Sbjct: 123 K--KTVETINVTMHHALDIAVNELGILEKNPTSKIKLRTTRVTSKDDEIKCYDIDELQQF 180 Query: 183 KSF---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI----------KTQK- 228 ++ G + F FL +GLR + + + + +++K Sbjct: 181 LNYVLKEKGGFKYFSLFMFLSRTGLRIGECLALQWEDVDFEEQKLFINKTLINTKRSEKI 240 Query: 229 -------TGTIITVELPDGFMKLLAMTPIGKET--------------FFINNDKQKMNAT 267 + T+ L + L I + F + D M Sbjct: 241 LFGPPKNKSSKRTISLDPSTISHLKKMKIEQNKQVLKNGKYYKDYNFVFTHEDNSCMLHP 300 Query: 268 QFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320 + + K + HG R A +GA + G ++D Sbjct: 301 SSLKFLLEASKKGNFKYITLHGFRHTHAVHLLQSGANIKYVSERLGHSSIDMTA 354 >gi|169824446|ref|YP_001692057.1| site-specific tyrosine recombinase XerC [Finegoldia magna ATCC 29328] gi|302380744|ref|ZP_07269209.1| site-specific tyrosine recombinase XerC [Finegoldia magna ACS-171-V-Col3] gi|167831251|dbj|BAG08167.1| integrase [Finegoldia magna ATCC 29328] gi|302311687|gb|EFK93703.1| site-specific tyrosine recombinase XerC [Finegoldia magna ACS-171-V-Col3] Length = 326 Score = 96.3 bits (238), Expect = 7e-18, Method: Composition-based stats. Identities = 36/204 (17%), Positives = 71/204 (34%), Gaps = 17/204 (8%) Query: 140 MRVLFKWAVRQEYVAI-NPCLSVERPKRKTEGIRPWTKED------MQQFKSFWSEGSQP 192 +R +K+ + + I NP ++ PK+ T ++ + + S+ Sbjct: 101 IRTFYKYLINIRKLDIINPAELLDSPKKNIRQPVYLTLDESLDLLKVILREKDEEIKSRD 160 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA-----M 247 L G+R S+ + H++ N + K TV L D + + Sbjct: 161 YCITVLFLNCGMRLSELSSINIDHIKTNTLRVI-GKGNKERTVYLNDMCLDAIDNYLKIR 219 Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAG-AT 303 I + FI+ + +M+ + G + S H +R +AT+ G Sbjct: 220 PEIDNDALFISKKRNRMSNRAIQYRIEHYLKIGGFDTSIYSVHKLRHTAATLMYQYGNVD 279 Query: 304 AHELMATYGWKTVDQAETYTKGAD 327 L G ++V + YT + Sbjct: 280 IKVLQEILGHESVSTTQIYTHVDN 303 >gi|320668198|gb|EFX35057.1| Site-specific recombinase, phage integrase family protein [Escherichia coli O157:H7 str. LSU-61] Length = 203 Score = 96.3 bits (238), Expect = 7e-18, Method: Composition-based stats. Identities = 44/209 (21%), Positives = 75/209 (35%), Gaps = 18/209 (8%) Query: 6 RLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65 +LPP V + Y K R ES + A L K E + R Sbjct: 12 KLPPKVYPNK------YSYVWKPTSR--------ESVTLTAIEDGLAALWKKYEETVNHR 57 Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125 + T L ++ SA++ L+ ++ + + +++ G + +HIR ++ Sbjct: 58 DRAMTFGRLWEKFLASAYYSELSPRTQKDYLQHQKKLLAVFGKVLADSVKPEHIRRYMDK 117 Query: 126 RKH-TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 R + + A +SM ++ W + YV NPC V + K K T ++ Q S Sbjct: 118 RGEQSKTQANHEKSSMSRVYSWGYERGYVKANPCAGVSKFKAKNRERYV-TDKEYQAVLS 176 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAG 213 +A E R SD Sbjct: 177 VAPL--PVFIAMEIAYLCAARVSDVLSLK 203 >gi|310816481|ref|YP_003964445.1| integrase [Ketogulonicigenium vulgare Y25] gi|308755216|gb|ADO43145.1| integrase [Ketogulonicigenium vulgare Y25] Length = 333 Score = 96.3 bits (238), Expect = 7e-18, Method: Composition-based stats. Identities = 58/337 (17%), Positives = 102/337 (30%), Gaps = 33/337 (9%) Query: 15 RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74 R R G + + GRR T A ++ + T+ + Sbjct: 8 RLRGGYCVTWTDPDGGRRRYKLDATTPTEAEAEARSIFHQAAAARAL--------TVSDI 59 Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQ---IIRKSGDFDYRKITTKHIRSGVESRKHTPS 131 S YRK R D I+ G + +ITT+ R VE R+ Sbjct: 60 WSAYRK-------DKAGRRIDHHMIDTGKTILPVFGALEPHQITTQDCRDYVEKRRAIGR 112 Query: 132 ---SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 + L +R WA + + P +ERP + R ++ ++ + S + Sbjct: 113 KDGTIRTELGHLRTSLSWAEKHRMIEHAP--HIERPAMPSPKERYLSRAEIDRLLSVDGD 170 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTG---TIITVELPDGFMK 243 RLA +L + R + +++ + G V + + Sbjct: 171 P-HIRLAILLMLTTAGRVGAILELTWDRVDMIRGQINLRLEGEGPRKGRAVVPINNTLRA 229 Query: 244 LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGA 302 L + F+ F+ KAG+ + H +R +A +AG Sbjct: 230 ALVAAKAHAMSEFVVEYAGGQIG-SIKTGFRNACAKAGLKGVTPHVLRHTAAVHMVEAGV 288 Query: 303 TAHELMATYGWKTVDQA-ETYTK-GADRIRLGIKNSR 337 E+ G TY + D +R Sbjct: 289 PILEVAQYLGHSNPSVTFSTYGRFSPDHLRKAADALE 325 >gi|207724061|ref|YP_002254459.1| integrase/recombinase protein [Ralstonia solanacearum MolK2] gi|206589270|emb|CAQ36232.1| integrase/recombinase protein [Ralstonia solanacearum MolK2] Length = 310 Score = 96.3 bits (238), Expect = 7e-18, Method: Composition-based stats. Identities = 39/300 (13%), Positives = 88/300 (29%), Gaps = 25/300 (8%) Query: 51 LTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD 110 + + + T+ L++ Y H A + R ++ + I +F+ Sbjct: 1 MLERLAEEKRKIEVDATERTMSRLVAIYMA-KHAKDYAESYRDEWKRRGETIRTAFRNFE 59 Query: 111 YRKITTKHIRSGV-ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169 ++ + E+ P++ + F WAVR++++ +NP V+ K+ Sbjct: 60 IEQVDAAACEDFLTENWHDKPTTQKAMKAWLSGFFSWAVRRKHLQVNPVREVK-IKKPPR 118 Query: 170 GIRPWTKEDMQQFK---------SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-- 218 T + G ++ + + R ++ + Sbjct: 119 RTVYITSAHFVAIRDALAMAADGKKTPTGPMMQVFVDLCYLTCQRSTEIRNLRWADIDWS 178 Query: 219 NNIFSIKTQKT----GTIITVELPDGFMKLLAMT----PIGKETFFINNDKQKMNATQFS 270 + KT G + + +L PIG + + + Sbjct: 179 ARLIRFVPTKTEDSSGEAVDWPITPEIEAVLHRAKKLEPIGGDYVVRDKHGKPKTTAACR 238 Query: 271 IWFKAKATKAGV---NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 + +AG+ + +R + T + AG L E Y K + Sbjct: 239 DAWNDAKMRAGLRDTKYTVKDIRAQALTDAKKAGYDIEALQVAGAHSDRATTEGYIKQRE 298 >gi|169628813|ref|YP_001702462.1| putative phage integrase [Mycobacterium abscessus ATCC 19977] gi|169240780|emb|CAM61808.1| Putative phage integrase [Mycobacterium abscessus] Length = 416 Score = 96.3 bits (238), Expect = 7e-18, Method: Composition-based stats. Identities = 48/317 (15%), Positives = 105/317 (33%), Gaps = 44/317 (13%) Query: 50 ALTGSTPKREYINSPRKKPTT---LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS 106 AL R I S + ++ L+ ++ + ++ + + +E+ I Sbjct: 84 ALDKLRDLRSAIRSGKSPTSSKVHLEQWLNHWLETIQKPRVRPTTYKYYETTVRLYILPF 143 Query: 107 --GDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP 164 G K+T +R + K+ +A + ++ A+ + + N V++P Sbjct: 144 IDGRTQLGKLTPAQVRKMIA--KNGTRNAQKAHQTLVKALGDAMDEGMLDKNVAAVVDKP 201 Query: 165 KRKTEGIRPWTKEDMQQFKSFWSEGSQP-RLAFEFLLYSGLRCSDSCRAGVQ--HLQNNI 221 K +P+T ++ +Q + + + P + + ++G R + L+ + Sbjct: 202 KHVAIERQPFTFDEARQIIATAIKRNDPWATMWAAMFFTGARQGEIIGMEWDRCDLEKGL 261 Query: 222 FSIKTQ--------------------------KTGTIITV-ELPDGFMKLLAM------T 248 F Q KT V + ++ Sbjct: 262 FDFSWQLQQLPPELPRGFKHRPCHLSLAWTKPKTKAGARVAPMTKPLQAIMEAYAKTDTG 321 Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHEL 307 P + + D ++ T S ++A A V +S H R +AT+ +AG + Sbjct: 322 PNPHGLVWRHPDGHPISPTDASDAWRALVKAADVPYRSMHSARHTTATLLNNAGVSQETR 381 Query: 308 MATYGWKTVDQAETYTK 324 M G + + Y Sbjct: 382 MKVVGHSSAVAQQIYVH 398 >gi|116254087|ref|YP_769925.1| site-specific tyrosine recombinase XerD [Rhizobium leguminosarum bv. viciae 3841] gi|115258735|emb|CAK09841.1| putative tyrosine recombinase [Rhizobium leguminosarum bv. viciae 3841] Length = 317 Score = 96.3 bits (238), Expect = 7e-18, Method: Composition-based stats. Identities = 50/274 (18%), Positives = 85/274 (31%), Gaps = 34/274 (12%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTK-----HIRSGVESRKHTPSSAIQFLTS 139 A N+ S+E D + + R S + + PSS + L + Sbjct: 20 RGAAANTLQSYERDLDDVRSFLTERSIRLTEAASTDLAAYLSSLARKGFKPSSQARRLAA 79 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-------GSQP 192 MR +K+ + A +P ++ PK+ + E++ + S G Sbjct: 80 MRQFYKFLYAEGLRADDPTGILDAPKKGRPLPKTMGVEEVGRLLSRAEAEAEDPAPGQLQ 139 Query: 193 RLAFEFL----LYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLLA- 246 RL L +G+R S+ + L F + K V L + L Sbjct: 140 RLRMLALLELLYATGMRVSELVSLPARVLDQEGRFLMIRGKGNKERLVPLSQSAISALKS 199 Query: 247 ------------MTPIGKETFFINNDKQKM-NATQFSIWFKAKATKAGVN---KSAHGVR 290 P F + K+ F+ K A +AG+ S H +R Sbjct: 200 YGRLLAVENAAVKEPQESPWLFPSASKEGYLPRQVFARDLKNLAIRAGLTPSLISPHVMR 259 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK 324 A+ GA + G + + YT Sbjct: 260 HAFASHLLANGADLRVVQELLGHSDISTTQIYTH 293 >gi|32471281|ref|NP_864274.1| integrase [Rhodopirellula baltica SH 1] gi|32396983|emb|CAD71953.1| integrase [Rhodopirellula baltica SH 1] Length = 348 Score = 96.3 bits (238), Expect = 7e-18, Method: Composition-based stats. Identities = 48/314 (15%), Positives = 94/314 (29%), Gaps = 50/314 (15%) Query: 52 TGSTPKREY------INSPRKKPTTL--KWLISEYRKSAHWGSLAVNSRISFESYFDQII 103 + + P++E SP+ P + L + H A + + Q+ Sbjct: 25 SATPPEKETNMSNSSSKSPQNAPGAHFPESLRLRLSEDLHLTGKAKRTHDGYIRAVRQLS 84 Query: 104 RKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS----MRVLFKWAVRQEYVAINPCL 159 +G ++T +H+R K+ + A L ++ F ++++ Sbjct: 85 DFAG-CSPDQVTEQHVRQFFLHLKNDRNFAYGSLRVAFSGIKFFFTHTCKRDW------E 137 Query: 160 SVERPKRK--TEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS----GLRCSDSCRAG 213 ++ K + T T ++Q + R ++ GLR +++ Sbjct: 138 IIKMLKLQNITTLPEVLT---IEQVHELIGSATTQR--MFVYFWTVYSLGLRLNEALHLQ 192 Query: 214 VQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAM--TPIGKETFFINNDKQ------- 262 V + + K V LP ++LL +F D + Sbjct: 193 VSDIDAERGWVHVHRGKGAKDRYVPLPTTTVRLLRNYWASHRHPSFLFPADGRKHDLAKD 252 Query: 263 -------KMNATQFSIWFKAKATKA--GVNKSAHGVRKFSATISADAGATAHELMATYGW 313 M+ T K G S H +R AT +AG + G Sbjct: 253 GVSEATTPMSETAVQGAMKQITKNLRFGKKVSIHTLRHSYATHLLEAGVGLKVIQKYLGH 312 Query: 314 KTVDQAETYTKGAD 327 ++ Y D Sbjct: 313 SSLQTTMVYLHLTD 326 >gi|298531269|ref|ZP_07018669.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1] gi|298508879|gb|EFI32785.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1] Length = 394 Score = 96.3 bits (238), Expect = 7e-18, Method: Composition-based stats. Identities = 37/237 (15%), Positives = 82/237 (34%), Gaps = 20/237 (8%) Query: 108 DFDYRKITTKHIRSGVESR--KHTPSSAIQFLTSMRVLFKWA-VRQEYVAINPCLSVERP 164 D + + H+ + + R K+ P + I + +R ++ + ++ + + ++ P Sbjct: 143 DMGLKDLDVLHMDAFLAERNRKYAPETRIHERSGLRGFLRYLYLERQILKKDLSALIQGP 202 Query: 165 --KRKTEGIRPWTKEDMQQFK----SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL- 217 ++ R T E ++ G + GLR + CR + + Sbjct: 203 PVYAQSRPPRFLTLEQIKTLFQSIDKDRPGGLRSYAMIHLAYSLGLRPGEICRVTLDDIL 262 Query: 218 -QNNIFSIKTQKTGTIITVELPDGFMKLL-------AMTPIGKETFFINNDK--QKMNAT 267 ++ + + +K + + LP G ++ L G N + Sbjct: 263 FRDKLIYLPDRKNSSPAKLPLPQGALRALAAYLAWNRPMDPGHRFLLCNTRTPYGPLTPL 322 Query: 268 QFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 S A +AG+ SA+ +R A A A+ E+ G + ++ Y Sbjct: 323 TVSQNISACFRRAGIKGSAYWLRHTYAQNLLQAEASIFEIKEMLGHDIIKTSKRYLH 379 >gi|291438313|ref|ZP_06577703.1| phage integrase [Streptomyces ghanaensis ATCC 14672] gi|291341208|gb|EFE68164.1| phage integrase [Streptomyces ghanaensis ATCC 14672] Length = 389 Score = 96.3 bits (238), Expect = 7e-18, Method: Composition-based stats. Identities = 57/348 (16%), Positives = 104/348 (29%), Gaps = 39/348 (11%) Query: 19 GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEY 78 G+ + G P+ E+T A + +R P + ++ Sbjct: 20 GRYQARYPGPDGVMRPAPFTFETTADADDWLAEKQTEIRRGEWRDPEAGAVGFRAYADKW 79 Query: 79 RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR------KHTPSS 132 + LA +R + D+ + D D +IT +R R K + Sbjct: 80 VEE---RELAPLTRDLYRYLLDKHLTAFADLDLDEITAPRVREWRAERLRITGAKTITAK 136 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192 A + L ++ AV E + NPC K K R T + + G + Sbjct: 137 AYRLLKAIMET---AVDDELIQRNPCRIKGAGKEKAAERRIATVAQVDALAD--AVGMRW 191 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--------------TQKTGTII---TV 235 RL Y +R + + + + ++ T + TV Sbjct: 192 RLMVYLGAYGPMRPEELAGLRRRDVDVDNLRVRIRLAEPERMNGRRVQGDTKSEAGTRTV 251 Query: 236 ELPDGFMKLLA------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAH 287 LP + L P F+ + F ++ G+ K + Sbjct: 252 ILPAFLRRELRWHLESYAEPGPDGLVFVGEKGAPFRRSTFGRKWRRAREVVGMPKGFRFY 311 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335 +R T+S +GAT + M G + A Y + + + Sbjct: 312 DLRHTGHTLSTRSGATLKDTMVRAGQSSEKAALIYQHSDEERQEEVAA 359 >gi|238760428|ref|ZP_04621566.1| Int [Yersinia aldovae ATCC 35236] gi|238701323|gb|EEP93902.1| Int [Yersinia aldovae ATCC 35236] Length = 284 Score = 96.3 bits (238), Expect = 7e-18, Method: Composition-based stats. Identities = 40/258 (15%), Positives = 85/258 (32%), Gaps = 17/258 (6%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI---RSGVESRK 127 L L+ + H +L + + + + + GD ++T + + RS + Sbjct: 19 LSDLVETWWL-YHGQNLKNGTIE--KRHLMKTLTALGDKVVSQLTKRELMEHRSQRLADG 75 Query: 128 HTPSSAIQFLTSMRVLFKWAVR-QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + ++ + L + +F ++ +E+ NP + K G+ E++ + + Sbjct: 76 ISAATINRDLYRLSGMFSALIKIEEFSGQNPQHGLPPLAEKNPGMTFLDTEEINRLLAVL 135 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246 S RL L +G R + + NN + K G T+ + + + Sbjct: 136 S--GDERLIALLCLSTGGRWGEVSTLTAAQVVNNRVTFLETKNGKKRTIPISAELQEEVK 193 Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHE 306 GK F + + F + ++ H +R A+ G Sbjct: 194 TNASGK--LFKVDYGK------FCETLRMVKPDLPRGQATHVLRHTFASHFMMNGGNIIA 245 Query: 307 LMATYGWKTVDQAETYTK 324 L G + Q Y Sbjct: 246 LQQILGHANIQQTMAYAH 263 >gi|260062369|ref|YP_003195449.1| tyrosine type site-specific recombinase [Robiginitalea biformata HTCC2501] gi|88783932|gb|EAR15103.1| tyrosine type site-specific recombinase [Robiginitalea biformata HTCC2501] Length = 386 Score = 96.3 bits (238), Expect = 7e-18, Method: Composition-based stats. Identities = 52/321 (16%), Positives = 109/321 (33%), Gaps = 30/321 (9%) Query: 34 RLPYPHESTFI------PAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSL 87 LP P+ + + Y+ + G K + PT L+ YR+ Sbjct: 48 HLPDPNHAKGLIRHLREAGYIVSGQGEVEKFRERLAREANPT----LLDTYRQFLRGRRY 103 Query: 88 AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE----SRKHTPSSAIQFLTSMRVL 143 + ++ S+ + Q + G+ K + ++ RK + S+ Q +++++ L Sbjct: 104 SESTIASYGTMAAQFLEFLGEKPPEKADQTDAEAFLQWLVLERKVSVSTHRQAISALKQL 163 Query: 144 FKW--AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY 201 + A E + P++ + K ++ + + + R L Sbjct: 164 EAFLPACHLE------AKGLVSPRKDRKLPGVLGKAEVMRLLQQ-TRNLKHRTLTALLYG 216 Query: 202 SGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLL---AMTPIGKETFF 256 GLR + + + ++ K V LP+ + LL Sbjct: 217 CGLRVGELINLQLAEVDIPRRQLLVRAGKGRKDRRVVLPERLLPLLGDYLTAYAPSRYLA 276 Query: 257 INNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWK 314 Q+ +AT + KA + +AG+ + H +R AT + G + G Sbjct: 277 EGRPGQQYSATSIRAFLKANSRRAGILKKVTPHMLRHSYATHLLEQGVDIRYIQELLGHA 336 Query: 315 TVDQAETYTKGADRIRLGIKN 335 + YT + + L I++ Sbjct: 337 RPETTMVYTHVSRQDLLDIQS 357 >gi|291615497|ref|YP_003522605.1| integrase family protein [Nitrosococcus halophilus Nc4] gi|291582559|gb|ADE17015.1| integrase family protein [Nitrosococcus halophilus Nc4] Length = 310 Score = 96.3 bits (238), Expect = 7e-18, Method: Composition-based stats. Identities = 43/247 (17%), Positives = 86/247 (34%), Gaps = 30/247 (12%) Query: 115 TTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW 174 T + + + R + + + +KWA++ V +P ++PKR Sbjct: 59 TEQFVAWQMRERGTKAHIVARRSSCLGSFYKWAMKNALVESDPIYLADKPKRPYRIPIWL 118 Query: 175 TKEDMQQFKSF-----------------WSEGSQPRLAFE--FLLYSGLRCSDSCRAGVQ 215 KE+ F+ + + R F +L SGLR S++ ++ Sbjct: 119 EKEEQLAFQEAVRRVDDLPENIFGRPREHIKAIRRRYDFLFGLILNSGLRISEALAVKIR 178 Query: 216 HLQ---NNIFSIKTQKTGTI-ITVELPDGFMKLLAM---TPIGKETFFINNDK-QKMNAT 267 ++ S++ G V LP+ F ++ G + F + Sbjct: 179 DVRIVNGVAKSVRVIGKGNRERLVPLPEAFGQVFGAWLQGRGGDDFVFAKAPGEKPPGPH 238 Query: 268 QFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 + + +AG++K + H +R AT +AGA ++ G + + YT Sbjct: 239 AVRTYLRRLIERAGIDKPVTPHKLRHTYATRLLEAGAELVDIQVLLGHVDLSTTQIYTH- 297 Query: 326 ADRIRLG 332 R+ Sbjct: 298 VSEERMA 304 >gi|222150480|ref|YP_002559633.1| integrase [Macrococcus caseolyticus JCSC5402] gi|222119602|dbj|BAH16937.1| integrase [Macrococcus caseolyticus JCSC5402] Length = 388 Score = 96.3 bits (238), Expect = 7e-18, Method: Composition-based stats. Identities = 51/297 (17%), Positives = 108/297 (36%), Gaps = 55/297 (18%) Query: 91 SRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVR 149 + S ES F +I+ K G ++I+ + ++ V + ++ R++F +A++ Sbjct: 87 TLASKESKFKSRILPKFGRIPIKEISRVYCQTVVNEWSKEMKAFNDYVIQARLVFNYAMK 146 Query: 150 QEYVAINPCLSVERPKRKTEG------IRPWTKEDMQQFKSFWSEG--SQPRLAFEFLLY 201 E + NP + P R + + TKE+++QF + E +Q F L + Sbjct: 147 LELIDKNPMEYITLPSRLEDKVFVEQSRKFLTKEELKQFMIYLEEENKTQNTCLFRLLAF 206 Query: 202 SGLRCSDSCRAGVQHLQ---------------NNIFSIKTQKTG-TIITVELPD------ 239 +G+R + + NN ++ KT + +++ + Sbjct: 207 TGMRKGEVLALHWSDINFVNKDLYVKKTLAKVNNKHVLQPPKTRESQRWIDIDNQTISKL 266 Query: 240 ---------GFMKLLAMTPIGKETFFINNDKQKMNA----------TQFSIWFKAKATKA 280 + + KE + ++N + +FK + Sbjct: 267 LQWKEEQKLQYEEYGFSVASDKEQPIFSTYHTRLNEMKYMRVSTPNDKLEAFFKRHSDLH 326 Query: 281 GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK--GADRIRLGIK 334 ++ HG R A++ ++GAT E+ G + + YT + R +L K Sbjct: 327 KIH--VHGFRHTHASLLFESGATLKEVQTRLGHSDIKTTMDIYTHITQSSREKLADK 381 >gi|154492472|ref|ZP_02032098.1| hypothetical protein PARMER_02106 [Parabacteroides merdae ATCC 43184] gi|154087697|gb|EDN86742.1| hypothetical protein PARMER_02106 [Parabacteroides merdae ATCC 43184] Length = 406 Score = 96.3 bits (238), Expect = 7e-18, Method: Composition-based stats. Identities = 52/265 (19%), Positives = 96/265 (36%), Gaps = 26/265 (9%) Query: 84 WGSLAVNSRISFESYFDQIIR-KSGDFDYRKITTKHIRSGVE-----------SRKHTPS 131 + LA I ++ + R +G + ++ R +E ++K + Sbjct: 134 FKELADRKNIKWQHVYKHFERFVNGKCTFEEVDVDLCRKFMEYLLNAPQSIHTNQKLHIN 193 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191 SA + ++ R + A R + + NP ++R + ++E++ + E Sbjct: 194 SAAGYWSAFRAVLHTAYRDKKIKENPNGFLDRIECIPTMREHLSQEELIRLAETPCEEDV 253 Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQ---NNIFSIKT--QKTGTIITVELPDGFMKLLA 246 + AF F +GLR SD + Q +Q N + T QKT I+ + D LL Sbjct: 254 LKRAFLFACLTGLRKSDIRQLTWQQIQPYTNGKMFVTTRMQKTKQIVHNPISDEAYGLLG 313 Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATA 304 G F + K AG+ K + H R ++ + G Sbjct: 314 ERHEG--LIF-----EGFKDKMLQGPLKRWLLAAGITKKITFHCTRHSFGSLHVEMGTDM 366 Query: 305 HELMATYGWKTVDQAETYTKGADRI 329 + A G K + + Y+K A + Sbjct: 367 AVIQAYMGHKNITTTQIYSKMAAQQ 391 >gi|118463716|ref|YP_881470.1| phage-related integrase [Mycobacterium avium 104] gi|118165003|gb|ABK65900.1| phage-related integrase [Mycobacterium avium 104] Length = 402 Score = 96.3 bits (238), Expect = 7e-18, Method: Composition-based stats. Identities = 40/283 (14%), Positives = 93/283 (32%), Gaps = 27/283 (9%) Query: 63 SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG 122 +PR T++ + + + + ++ QI+ + GD ++ +++ Sbjct: 80 APRDAKLTVQQWCDTWIE--GYKVHREGTVREARTHIRQIVTEFGDTPLTQVRPSQVKAW 137 Query: 123 VESRKHTPSSAIQFL---TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179 + A + + + AV + NPC P + T E + Sbjct: 138 TARLRADGMKASYIYALHSRLSQIMADAVHDGVLGRNPCSRRTAPPMGKAKVYVATTEQV 197 Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQ------KT-G 230 + ++A ++GLR ++ V + + K Q KT G Sbjct: 198 WAL--HDAVPDHLKVAVLLGAFAGLRVAEVSGLRVSDVDFIRGVVHPKQQWSDKPLKTEG 255 Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA---GVNK--- 284 + + +P LL+ + + + + + W +A + G++ Sbjct: 256 SSAPIPIPQDLALLLSASVQKYPAEMMVTNG--LGTDRCGPWIIERAIRDVRRGIDGLPE 313 Query: 285 --SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324 S H +R + A++ G + A + +TY+ Sbjct: 314 GFSFHDLRHYLASLLIARGCDVKTVQARLRHSSAKTTLDTYSH 356 >gi|15808369|gb|AAL08410.1|AF252852_3 unknown [Prevotella loescheii] Length = 418 Score = 96.3 bits (238), Expect = 7e-18, Method: Composition-based stats. Identities = 34/208 (16%), Positives = 71/208 (34%), Gaps = 10/208 (4%) Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 + ++A + + + K A Y+ I+ ++ + + T +++ + + E Sbjct: 199 SRNTASTYFSIFKAALKQAFIDGYLTIDLSAKIKGIQEQESRREYLTLDELNKLANTPCE 258 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI----FSIKTQKTGTIITVELPDGFMKL 244 + A F +GLR D + + + +KT + + + + KL Sbjct: 259 RDVLKRAALFSALTGLRHCDIQKLRWKEIAIEGNQAKLLFTQKKTKGVEYMPISEQAFKL 318 Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302 ++ F + +A KAG+ K S H R AT+ G Sbjct: 319 CGEPRQPEQLVFEGLPNPSWISRPL----RAWIEKAGIQKHLSFHCFRHTFATLQLANGT 374 Query: 303 TAHELMATYGWKTVDQAETYTKGADRIR 330 + + G V + Y K D + Sbjct: 375 DIYTVSKMLGHTNVKTTQVYAKVVDEKK 402 >gi|294789961|ref|ZP_06755178.1| xylulose-5-phosphate/fructose-6-phosphate phosphoketolase [Simonsiella muelleri ATCC 29453] gi|294482099|gb|EFG29809.1| xylulose-5-phosphate/fructose-6-phosphate phosphoketolase [Simonsiella muelleri ATCC 29453] Length = 315 Score = 95.9 bits (237), Expect = 7e-18, Method: Composition-based stats. Identities = 44/248 (17%), Positives = 89/248 (35%), Gaps = 14/248 (5%) Query: 92 RISFESYFDQIIRKSGDFDYR-----KITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKW 146 + +S D I R R + K I V + S+ ++L +R + Sbjct: 32 KQDKKSIEDDICRIRQLTALRGRYLQDLDRKTIMKVVSELPCSNSTKNRYLALIRSILNK 91 Query: 147 AV-RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLR 205 V ++++ P + K + IR ++ Q+ + + F L +GLR Sbjct: 92 CVNEWDWLSKAP--KLTLYKEPKKRIRWLKPQEAQKLVHAFENLPYMQHMIIFSLVTGLR 149 Query: 206 CSDSCRAGVQHLQNN----IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK 261 ++ + + K + V L +++LA+ F N+ Sbjct: 150 QNNVLNLKWEQIDLKRRIAWIYPDETKNSQALGVPLNQVALQVLAVRQKTTPFVFNNSKG 209 Query: 262 QKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320 Q + A IW + +AG+ N H +R A+ +G L GW++++ + Sbjct: 210 QPVKAVSHRIW-RKGLKEAGISNFKWHDLRHTWASWLVQSGVPLLALKEMGGWESLEMVQ 268 Query: 321 TYTKGADR 328 Y + + Sbjct: 269 KYAHLSSQ 276 >gi|317056716|ref|YP_004105183.1| integrase family protein [Ruminococcus albus 7] gi|315448985|gb|ADU22549.1| integrase family protein [Ruminococcus albus 7] Length = 335 Score = 95.9 bits (237), Expect = 7e-18, Method: Composition-based stats. Identities = 34/251 (13%), Positives = 87/251 (34%), Gaps = 16/251 (6%) Query: 111 YRKITTKHIRSGV-ESRKHTPSSAIQFLTSMRVLFKWA-VRQEYVAINPCLSVERPKRKT 168 R I + + R ++ + + ++++ + + +++ + +P +E PK Sbjct: 75 LRLIDAYDYLKWLADERSNSVKTRARKTSALKQFYSYLYLKKNSIPSDPLTQLELPKLPK 134 Query: 169 EGIRPWTKEDMQQFKSFW--SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226 + + ED Q+ S + L G+R S+ C + +I+ Sbjct: 135 TLPKYLSLEDAQRLLSSIESDHFERDYCMITLFLNCGMRLSELCGLDIGDFSFESGTIRL 194 Query: 227 QKTGTIIT--------VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKAT 278 G + ++ + ++ F++N +++ + + Sbjct: 195 FGKGQKERVVYINQACIAALKAYLPIRLSVQTQEKALFLSNRNTRISRRRTQEIVEESLK 254 Query: 279 KAGVN---KSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGADRIRLGIK 334 KAG+ + H +R +AT+ G L G +++ E YT ++ Sbjct: 255 KAGLGNLGITTHKLRHTAATLMYQYGNVDTLVLKDILGHESLATTEIYTHLSNENLKQAA 314 Query: 335 NSRRISSVVDS 345 + +S + Sbjct: 315 EANPLSGQKAN 325 >gi|298388102|ref|ZP_06997647.1| integrase [Bacteroides sp. 1_1_14] gi|298259132|gb|EFI02011.1| integrase [Bacteroides sp. 1_1_14] Length = 382 Score = 95.9 bits (237), Expect = 7e-18, Method: Composition-based stats. Identities = 46/275 (16%), Positives = 99/275 (36%), Gaps = 26/275 (9%) Query: 90 NSRISFE---SYFDQIIRK---SGDFDYRKITTKHIRSGVESRKH----TPSSAIQFLTS 139 + +E Y ++ I+K D + I K +SAI L + Sbjct: 108 KTVQRYETTTRYLEEFIKKEYQLSDIALNNLEANFISKFDAFLKIEKGCAQNSAITRLKN 167 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQPRLAF 196 ++ + + A+ +++ +P + R K + T ++++ + Q R F Sbjct: 168 LKKIIRIALENDWIKKDP-FAYYRFKLEETDPEFLTMDEIKIILAKEFTIKRVEQVRDVF 226 Query: 197 EFLLYSGLRCSDSCRAGVQH-LQNN----IFSIKTQKTGTIITVELPDGFMKLLAMTPIG 251 F +++GL SD +H +++N QKT + + + +L Sbjct: 227 VFCIFTGLAFSDVKDLSPEHLVKDNKGELWIRKNRQKTKIMCNIPVLPVAASILDKYKDV 286 Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS-ADAGATAHELM 308 E + + + + K A G++K S H R AT G + + Sbjct: 287 AE--CTGKLLPVLCNQRMNSYLKEIADVCGIHKNLSTHTARHSYATSICLANGVSMENVA 344 Query: 309 ATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343 G + + Y + D+ K+ ++++S + Sbjct: 345 KMLGHADTNVTKHYARVLDQN--IFKDMQKVNSCL 377 >gi|190893726|ref|YP_001980268.1| tyrosine site-specific integrase/recombinase protein [Rhizobium etli CIAT 652] gi|190699005|gb|ACE93090.1| tyrosine site-specific integrase/recombinase protein [Rhizobium etli CIAT 652] Length = 311 Score = 95.9 bits (237), Expect = 7e-18, Method: Composition-based stats. Identities = 45/278 (16%), Positives = 85/278 (30%), Gaps = 29/278 (10%) Query: 82 AHWGSLAVNSRISFESYFDQIIRKS-GDF-------DYRKITTKHIRSGVESRKHTPSSA 133 A L+ ++ ++E Q + G D R++ R+ + +R+ S A Sbjct: 24 ARERRLSEHTLDAYERDTRQFLTFLTGHLAGPVTLSDIRELRPADFRAFLAARRKQGSGA 83 Query: 134 IQF---LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM-------QQFK 183 L +R L + ++ V ++ PK+ +P + Q Sbjct: 84 RSLGRNLAGLRSLLRHLEKKGLVNAAGAAAIRSPKQPKSLPKPLSDTQAITVVSNEAQLH 143 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFM 242 ++ L GLR S++ L +++ T K V L Sbjct: 144 DEPWIAARDAAVMTLLYGCGLRISEALDLVPADLPKGATTLRITGKGNKTRLVPLLPVVF 203 Query: 243 KLLAMTPI-------GKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFS 293 + + F K+ A + + G+ + H +R Sbjct: 204 EAVEKYRALCPYHLENDAPLFRGARGGKLQAAIIQRAMQKLRSAFGLPETATPHALRHSF 263 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 AT G + G ++ + YT G D RL Sbjct: 264 ATHLLAGGGDLRTIQELLGHASLSTTQVYT-GVDASRL 300 >gi|160945174|ref|ZP_02092400.1| hypothetical protein FAEPRAM212_02693 [Faecalibacterium prausnitzii M21/2] gi|158442905|gb|EDP19910.1| hypothetical protein FAEPRAM212_02693 [Faecalibacterium prausnitzii M21/2] Length = 402 Score = 95.9 bits (237), Expect = 7e-18, Method: Composition-based stats. Identities = 37/239 (15%), Positives = 80/239 (33%), Gaps = 19/239 (7%) Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTKED----MQQ 181 + SS + L S+ + + V Q ++ +P ++ PK+ + T E ++ Sbjct: 101 GNKKSSTARRLASLHGFYDYLVNQVNRLSEDPTAAIRPPKQDKVLPKYLTAEQSISLLES 160 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG 240 ++ + L G+R ++ + + I+ K V L + Sbjct: 161 TQTQSDFPERDYCMVVLFLNCGMRLAELVGMDLGDIDLEQRQIRLFGKGHKERMVYLNNA 220 Query: 241 FMKLLAM-----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHG 288 ++ L + +P K F K++++ + AG+ S H Sbjct: 221 CVEALQLYLRKRNTMEGLSPKEKAVFITRMRKERISNRRVEQLISGAMKAAGLKGFSTHK 280 Query: 289 VRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSD 346 +R +AT+ G L G +V + YT + + V+ + Sbjct: 281 LRHTAATLMYQTGNVDILTLKQLLGHSSVGTTQIYTHLQEFQVRSAIEENPLGKVLPIN 339 >gi|320534120|ref|ZP_08034661.1| putative site-specific tyrosine recombinase XerD [Actinomyces sp. oral taxon 171 str. F0337] gi|320133699|gb|EFW26106.1| putative site-specific tyrosine recombinase XerD [Actinomyces sp. oral taxon 171 str. F0337] Length = 222 Score = 95.9 bits (237), Expect = 7e-18, Method: Composition-based stats. Identities = 33/201 (16%), Positives = 65/201 (32%), Gaps = 26/201 (12%) Query: 150 QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-----SEGSQPRLAFEFLLYSGL 204 + + +P +V P+ + ++++ + R E L +G Sbjct: 3 EGTTSEDPSATVRPPQPGRRLPKALGIDEVRLLLEAAGVDDSPVSLRDRALLEVLYATGA 62 Query: 205 RCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVEL-------PDGF----MKLLAMTPIGK 252 R S++ + L + ++ K V + D + +LA G Sbjct: 63 RISEAVGLVIDDLDTDSRLLRLFGKGRKERVVPMGTYAWEALDAYLVRGRPVLAEKGRGV 122 Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGV---------NKSAHGVRKFSATISADAGAT 303 F+N + ++ + A +AG+ S H +R AT GA Sbjct: 123 PQVFLNTLGRPLSRQSAWAVLQQAAERAGLIGVDSADRRRISPHTLRHSFATHLLAGGAD 182 Query: 304 AHELMATYGWKTVDQAETYTK 324 + G +V + YTK Sbjct: 183 VRVVQEMLGHASVTTTQIYTK 203 >gi|256367608|ref|YP_003108167.1| shufflon-specific DNA recombinase [Escherichia coli] gi|331660225|ref|ZP_08361160.1| shufflon-specific DNA recombinase [Escherichia coli TA206] gi|228480863|gb|ACQ42189.1| shufflon-specific DNA recombinase [Escherichia coli] gi|321271555|gb|ADW79644.1| IncI1 shufflon-specific DNA recombinase Rci [Escherichia coli] gi|331052492|gb|EGI24528.1| shufflon-specific DNA recombinase [Escherichia coli TA206] Length = 384 Score = 95.9 bits (237), Expect = 7e-18, Method: Composition-based stats. Identities = 47/282 (16%), Positives = 94/282 (33%), Gaps = 27/282 (9%) Query: 61 INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120 + SPR + +L + +Y K+ + + + +ITT I Sbjct: 1 MPSPRIRKMSLSRALDKYLKTVSVHKKGHQQEFYRSNVIKRY--PIALRNMDEITTVDIA 58 Query: 121 SGVESR----------KHTPSSAIQFLTSMRVLFKWA-VRQEYVAINPCLSVERPKRKTE 169 + + R T ++ L + LF A V NP V +PK + Sbjct: 59 TYRDVRLAEINPRTGKAITGNTVRLELALLSSLFNIARVEWGTCRTNPVELVRKPKVSSG 118 Query: 170 GIRPWTKEDMQQFKSFWSE-GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKT 226 R T + ++ ++ E + F L + +R + +H+ + + Sbjct: 119 RDRRLTSSEERRLSRYFREKNLMLYVIFHLALETAMRQGEILALRWEHIDLRHGVAHLPE 178 Query: 227 QKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM--NATQFSIWFKAKATKAGV-N 283 K G V L L M P +N A+ F ++ + + + Sbjct: 179 TKNGHSRDVPLSRRARNFLQMMP-------VNLHGNVFDYTASGFKNAWRIATQRLRIED 231 Query: 284 KSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTK 324 H +R + + + G E+ A G ++++ + YT Sbjct: 232 LHFHDLRHEAISRFFELGSLNVMEIAAISGHRSMNMLKRYTH 273 >gi|255530752|ref|YP_003091124.1| integrase family protein [Pedobacter heparinus DSM 2366] gi|255343736|gb|ACU03062.1| integrase family protein [Pedobacter heparinus DSM 2366] Length = 294 Score = 95.9 bits (237), Expect = 7e-18, Method: Composition-based stats. Identities = 38/272 (13%), Positives = 94/272 (34%), Gaps = 27/272 (9%) Query: 85 GSLAVNSRISFESYF---DQIIRKSGDFDYRKITTKHIRS---GVESRKHTPSSAIQFLT 138 + ++ S+++ ++++ + ++ HIR+ + + + +S + L+ Sbjct: 14 KRYSSHTIQSYQTDLLQFTDFMQQTFELPLTEVKYVHIRNFIVALMEDEISENSVGRKLS 73 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE-------DMQQFKSFWSEGSQ 191 ++R +K+ +R+ ++ NP V+ PK + E D ++F + Sbjct: 74 ALRSFYKYLLRENVLSSNPMALVKAPKVPKRLP-VFVDEGKLDLLLDSEEFFDGSFPSLR 132 Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMK------- 243 + E L +G+R ++ + +I+ K V + + Sbjct: 133 DKTVIETLFGTGIRLAELLSLKETDINFYESTIRVMGKRSKERIVPIGKTLREQFRVYME 192 Query: 244 --LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKA--TKAGVNKSAHGVRKFSATISAD 299 L F+ + + KS H +R AT + Sbjct: 193 LKTLQNFDNKTTMLFVTDKGAAAYPKLIYRTVQRYLTYVSTQDKKSPHVLRHSYATSLLN 252 Query: 300 AGATAHELMATYGWKTVDQAETYTK-GADRIR 330 GA + + G ++ + YT +R++ Sbjct: 253 RGADLNAIKELLGHASLAATQVYTHNSVERLK 284 >gi|327252692|gb|EGE64346.1| phage integrase family protein [Escherichia coli STEC_7v] Length = 426 Score = 95.9 bits (237), Expect = 8e-18, Method: Composition-based stats. Identities = 45/317 (14%), Positives = 97/317 (30%), Gaps = 64/317 (20%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK-ITTKHIRSGVESR-- 126 T+K L ++ +A S ++ + I+ G+ + I + + + Sbjct: 80 TIKELAEKFLALKE-TEVAKASLNTYRAVIKNILSIIGEKNLASSINKEKLLEVRKELLT 138 Query: 127 --------------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172 + + ++T++ +F++ V Y+A NP + K Sbjct: 139 GYQIPKSNYIVTQPGRSAVTVNNYMTNLNAVFQFGVDNGYLADNPFKGISPLKESRTIPD 198 Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIK----- 225 P ++E+ + Q + + +Y+G+R + C G + + N I+ Sbjct: 199 PLSREEFIRLIDAC-RNQQAKNLWCVSVYTGIRPGELCALGWEDIDLKNGTMMIRRNLAK 257 Query: 226 --------TQKTGTIITV--ELPDGFMKLLAMTPIGKETFF------------------- 256 T +I + D + +T + KE Sbjct: 258 DRFTVPKTQAGTNRVIHLIKPAIDALRSQMTLTRLSKEHIIDVHLREFGRTEKQKCTFVF 317 Query: 257 -------INNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELM 308 + N + A +AG+ ++ ++ R A S AGA + Sbjct: 318 QPEVSARVKNYGDHFTVDSIRQMWDAAIKRAGLRHRKSYQSRHTYACWSLTAGANPAFIA 377 Query: 309 ATYGWKTVDQA-ETYTK 324 G + Y K Sbjct: 378 NQMGHADAQMVFQVYGK 394 >gi|302343665|ref|YP_003808194.1| integrase family protein [Desulfarculus baarsii DSM 2075] gi|301640278|gb|ADK85600.1| integrase family protein [Desulfarculus baarsii DSM 2075] Length = 397 Score = 95.9 bits (237), Expect = 8e-18, Method: Composition-based stats. Identities = 53/370 (14%), Positives = 119/370 (32%), Gaps = 44/370 (11%) Query: 12 TKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL 71 +E+ + + F G+R + + + + ++I P T Sbjct: 5 VREKVKGSGAWWVFVNHDGKR-KSKLVGDKKAAKEAARKIEAALASGKFIVEDEAMP-TF 62 Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130 L E+ + ++ ++ + I+R+ G +IT I+ + + + Sbjct: 63 GELAKEWIALTVPATCKASTLKDYQRLLANHILRRFGSKPVDQITRLMIKDFLLQKGKSG 122 Query: 131 ---SSAIQFLTSMRVLFKWAVRQEYVAINPC----LSVERPKRKTEGIRPWTKEDMQQFK 183 S+ L + + AV Y+A NP V R K + I P T +++ Sbjct: 123 LAGSTVRHMLNVISGVMTRAVEAGYIAHNPGQRMGRGVIRIKDRKADIEPLTTQELDHLL 182 Query: 184 SFWSEGSQPRLAFEFLLY-SGLRCSDSCRAGVQHLQ--NNIFSIKTQ---------KTGT 231 + L +G+R ++ + I+ K+G Sbjct: 183 EVVRDRFPNAFPMILTLARTGMRLGEARGLEWGDIDFRGGFIMIRRGVSRERMETPKSGK 242 Query: 232 IITVELPDGFMKLLAMTPIGK-------------ETFFINNDKQKMNATQFSIWFKAKAT 278 V++ +L + + F++ + + ++ F KA Sbjct: 243 GRRVDMSRQLAAVLLDLRARRKREALAKGWGKVPDRVFLSAEGKPVHDYHFRNRIWYKAL 302 Query: 279 K-AGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGADRIRLGIKN 335 + AG+ + H +R A++ G + + G ++ +TY L Sbjct: 303 EYAGLRRVRIHDLRHTFASLLIQNGESLAYVRDQLGHCSISLTVDTYGH------LAPDG 356 Query: 336 SRRISSVVDS 345 +R +D+ Sbjct: 357 NRNAVDKLDN 366 >gi|225574819|ref|ZP_03783429.1| hypothetical protein RUMHYD_02896 [Blautia hydrogenotrophica DSM 10507] gi|225038019|gb|EEG48265.1| hypothetical protein RUMHYD_02896 [Blautia hydrogenotrophica DSM 10507] Length = 279 Score = 95.9 bits (237), Expect = 8e-18, Method: Composition-based stats. Identities = 33/280 (11%), Positives = 94/280 (33%), Gaps = 26/280 (9%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134 + Y ++ + ++ + + K + + + +++ P+S Sbjct: 10 LDSYLDYLKRQERSLATIKQYQRDIQSFLMYIKKHGFCKESVIQYKEKL-RKEYLPASVN 68 Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS---- 190 L ++ ++ E V++ + + + ++++ + + + Sbjct: 69 VKLAAINGFLNYSGATEL-------KVKQLRIQKKTYCA-KEKELSKNEYLCMVNTARSL 120 Query: 191 -QPRLAFEF--LLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE--LPDGFMKLL 245 Q +LA + +G+R S+ + + N I + + + L + + Sbjct: 121 GQEKLALLLQTICGTGIRVSELSFITAEAVCNGEALIHMKGKTRTVLIPGKLRKVLKRYM 180 Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISADAGA 302 I F+ + ++ + K KAGV H +R A A Sbjct: 181 GSQKISSGAVFVTRTGRPLDRSNIWKMMKRLCGKAGVETKKVFPHNLRHLFARCFYAADK 240 Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342 +L G +++ Y K + G+++ +R+ ++ Sbjct: 241 DIAKLADVLGHSSINTTRIYIKSS-----GVEHRQRMDAL 275 >gi|170744751|ref|YP_001773406.1| integrase family protein [Methylobacterium sp. 4-46] gi|168199025|gb|ACA20972.1| integrase family protein [Methylobacterium sp. 4-46] Length = 413 Score = 95.9 bits (237), Expect = 8e-18, Method: Composition-based stats. Identities = 42/277 (15%), Positives = 101/277 (36%), Gaps = 30/277 (10%) Query: 100 DQIIRKSGDFDYRKITTKHIRSGVESRKHTP--SSAIQFLTSMRVLFKWAVRQEYVAINP 157 + ++ G I + + V+ + A + + R LF +A+ ++ + P Sbjct: 131 NHVLPHWGHRRIGDIGRADVIALVDGLTDRGMTTGANRVFATTRALFNFALGRDLITSTP 190 Query: 158 CLSVERPKRKTEGIRPWTKEDMQ-QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH 216 L ++ P R + +++ + G + LL +G R +++ Sbjct: 191 FLGLKPPLPNPSRDRVLSDAEVRWAWLCAERIGFPFGPMVQLLLLTGTRRNETGEMVWSE 250 Query: 217 LQNNIFSIKTQKTGTII--TVELPDGFMKLLAMTPI--GKETFFINNDK----------- 261 L +++I +T + V LP +++LA P G+ + + Sbjct: 251 LDGTVWTIPGARTKNSLEHVVPLPPAAIEILAAVPRIAGRPGYVFTRNGSTPASDLSAGK 310 Query: 262 QKMNATQFSIWFKAKATKAGVNK-------SAHGVRKFSATISADAGATAHELMATYGWK 314 +++ A ++ A + K + H +R+ +A+ A G H + A + Sbjct: 311 RRLEAAMLTVAQSEAARRGEDPKAVTIPRWTLHDLRRTAASGMARLGTDPHVVEAVLNHR 370 Query: 315 TVDQ---AETYTKGA--DRIRLGIKNSRRISSVVDSD 346 + A Y + A + R ++ + + + +D Sbjct: 371 SGTISGVAAVYNRYAYLNEKRAALETWGKHVTSLAND 407 >gi|297617958|ref|YP_003703117.1| integrase family protein [Syntrophothermus lipocalidus DSM 12680] gi|297145795|gb|ADI02552.1| integrase family protein [Syntrophothermus lipocalidus DSM 12680] Length = 280 Score = 95.9 bits (237), Expect = 8e-18, Method: Composition-based stats. Identities = 41/261 (15%), Positives = 88/261 (33%), Gaps = 24/261 (9%) Query: 86 SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS---------GVESRKHTPSSAIQF 136 L + ++ R + + + + S + +R P++ + Sbjct: 9 ELNRGTARAYREDLLDFSRWFAETNGESLEPHLVTSIDLKEYQSHMILNRGLKPATVNRR 68 Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF-KSFWSEGSQPRLA 195 + ++R +W Q + P +R + + +K + ++F ++ EG++ +A Sbjct: 69 MAAIRAWMRWCQEQGLIENLP-RWPKRAAQVQHAPKALSKREQERFLRAVEKEGNRRDVA 127 Query: 196 FE-FLLYSGLRCSDSCRAGVQHL---QNNIFSIKTQKTGTIITVELPDGFMKLLA----- 246 +L++GLR ++ R V + T K V L ++ Sbjct: 128 LIGLMLFAGLRVGEAARVRVSDVSISDRKGKVSITGKGMKHREVPLGFDARNMVRDWLNH 187 Query: 247 -MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSATISADAGA 302 +E F + ++A K A +A + + H +R AT G Sbjct: 188 QAQHAQQEWLFPGQNGGHISARAVQHMIKKYAWQARIEPQKITPHVLRHTFATNLLRDGV 247 Query: 303 TAHELMATYGWKTVDQAETYT 323 + A G +D YT Sbjct: 248 DLVTVAALLGHSRLDTTARYT 268 >gi|256026508|ref|ZP_05440342.1| putative integrase [Fusobacterium sp. D11] gi|289764520|ref|ZP_06523898.1| conserved hypothetical protein [Fusobacterium sp. D11] gi|289716075|gb|EFD80087.1| conserved hypothetical protein [Fusobacterium sp. D11] Length = 329 Score = 95.9 bits (237), Expect = 8e-18, Method: Composition-based stats. Identities = 35/262 (13%), Positives = 87/262 (33%), Gaps = 14/262 (5%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS- 132 + + + H + S +++ + + +K D + ITT +R +++ + ++ Sbjct: 54 YLEAFLSAKHVEGCSRKSLKYYKATIENLFKKI-DKSIKHITTNDLREYLDNYQKEGNAS 112 Query: 133 ---AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 F W ++Y+ +P + + K T ++ E M+ + Sbjct: 113 KITIDNIRRIFSSFFAWLEEEDYILKSPVRRIHKVKTGTLVKETYSDEAMEIMRDNCRS- 171 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDG----FMKL 244 + + L +G+R + + ++ + + K V Sbjct: 172 LRDLAIIDILASTGMRVGELVKLNIEDIDFEGRECVVFGKGDKERKVYFDARTKIHLHNY 231 Query: 245 LAMTPIGKETFFIN--NDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAG 301 L F++ +++ + I + K + K H R+ AT + D G Sbjct: 232 LKTRDDDNSALFVSLLKPYKRLQISGVEIMLRQLGRKLNITKVHPHKFRRTLATKAIDKG 291 Query: 302 ATAHELMATYGWKTVDQAETYT 323 ++ G + +D Y Sbjct: 292 MPIEQVQQLLGHQKIDTTLQYA 313 >gi|251778173|ref|ZP_04821093.1| phage integrase [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243082488|gb|EES48378.1| phage integrase [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 388 Score = 95.9 bits (237), Expect = 8e-18, Method: Composition-based stats. Identities = 63/387 (16%), Positives = 121/387 (31%), Gaps = 63/387 (16%) Query: 11 VTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT 70 + K++ ++GK Y++R H + + T I + ++ T Sbjct: 5 IYKKKIKNGKDYYFYRLRHENLDKPADLYGRTVKELEDRIKQRKYELEHDIVNNKECFET 64 Query: 71 L--KWLISEYRKSAHWGSLAVNSRISFESYFDQIIR-----KSGDFDYRKITTKHIRSGV 123 WL H+ L +++ ++E + ++ K + + I + + + Sbjct: 65 FFTDWLFD-----IHFSHLKPSTKENYEGVYRMYVKNSSLSKIKVKNLKLIDIQKFYNSL 119 Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK-------RKTEGIRPWTK 176 S T +R ++ + + S+ PK K I P+T+ Sbjct: 120 VSNGCTIIRIKNIHKIIRPFIRYLYANNIIIKDFSSSIILPKEDEKTKLAKENKIIPFTR 179 Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ------------------ 218 E+ + F S G + F LYSGLR + + Sbjct: 180 EEEKTFLSAIK-GQHLEMLFVTALYSGLRQGELFALTWNDINFEKAYIDVNKTYRYIADV 238 Query: 219 ------NNIFSIKTQKTGTII-TVELPDGFMKLLAMTPIG--------------KETFFI 257 SI+T KT I TV +P +K+L F Sbjct: 239 TRTGRTGGYSSIQTPKTPKSIRTVPIPQFLIKMLLQYRNDQRLLKIKYADVYEDHNLVFC 298 Query: 258 NNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTV 316 N + + +K T + + H +R AT + G + G TV Sbjct: 299 NKLGAYLVDSTVGRQYKIILTNNNIPLRKFHDMRHTFATRLFELGEEPKTVQELLGHSTV 358 Query: 317 DQA-ETYTKGADRIRLGIKNSRRISSV 342 TYT + ++ + ++ + Sbjct: 359 SITLNTYTHVLESVK--QQAISKLDEL 383 >gi|292669749|ref|ZP_06603175.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541] gi|292648546|gb|EFF66518.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541] Length = 344 Score = 95.9 bits (237), Expect = 8e-18, Method: Composition-based stats. Identities = 44/248 (17%), Positives = 78/248 (31%), Gaps = 31/248 (12%) Query: 101 QIIRKSGDFDYRKITTKHIRSGVESRKHTPSS---AIQFLTSMRVLFKWAVRQEYVAINP 157 Q++ G+ IT ++ V + P S + + A + + +NP Sbjct: 69 QLLPAFGEQPLAAITRSQVQGFVNAMADHPYSMETIKATKCLLSSIMALAASDQLIPVNP 128 Query: 158 CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL 217 C +V+ PK + R + E+ ++ SEG + +A L +GLR + + + Sbjct: 129 CKAVKLPKVEPNKKRAPSMEEFKRLMK-ASEGHRLWIAIPLLFLAGLRLGEMLALTWEDI 187 Query: 218 QNNIFSIKTQKTGT-------------------IITVELPDGFMKLLAMTPI----GKET 254 I KT + ++ + D +L GK Sbjct: 188 DMKERLIHVSKTWSVENGSGKAYLKDSPKTKAGRRSIPIGDDLYTMLKRYRTNEGKGKNV 247 Query: 255 FFINNDKQKMNATQ--FSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMAT 310 D + Q FK A + K + H R + A AG L Sbjct: 248 VIPKRDADEYTHPQVFRGKVFKYWCYDADLPKDITPHSGRHYFAYHLYAAGVNPETLRHI 307 Query: 311 YGWKTVDQ 318 G + Sbjct: 308 TGHSDITT 315 >gi|158340210|ref|YP_001521380.1| phage integrase [Acaryochloris marina MBIC11017] gi|158310451|gb|ABW32066.1| phage integrase [Acaryochloris marina MBIC11017] Length = 551 Score = 95.9 bits (237), Expect = 8e-18, Method: Composition-based stats. Identities = 57/315 (18%), Positives = 103/315 (32%), Gaps = 43/315 (13%) Query: 50 ALTGSTPKREYINSPRK--KPTTLKW-LISEYRKSAHWGSLAVNSRISFESYFDQIIRKS 106 A +PK P + P ++W ++ E+ +++ +L+ NS+ +E + + Sbjct: 22 ADQAPSPKSIRRGRPTQIPTPMDIRWPMVQEFLRNS---NLSPNSQKLYERELKRFLG-W 77 Query: 107 GDFDYRKITTKHI---------RSGVESRKHTPSSAIQFLTSMRVLFKWAVR--QEYVAI 155 F + +T +H+ E + + +S LT+++ FKW + E Sbjct: 78 THFRWSDLTLRHLGQYKVYLMELKVAEGKTLSKNSLNSALTALKSFFKWLTQFHPELCPT 137 Query: 156 NPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR------LAFEFLLYSGLRCSDS 209 NP V+ K + T E+M + W +Q LA LL LR + Sbjct: 138 NPTKGVKFEKVPLPPAQNLTPEEMTR---VWDAITQREQTQLRDLALVQLLSHNLRAGEV 194 Query: 210 CRAGVQHLQNNIFSIKTQKTGTIITVEL-----------PDGFMKLLAMTPIGKETFFIN 258 A V + SI K V L D + ++ Sbjct: 195 VTANVGSFDGRLISITKTKNNQPRLVPLSTEGQQVVQEYLDWRKDQQGEALSAESPLILS 254 Query: 259 ND----KQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGW 313 + Q+++ + A + + H R SAT G G Sbjct: 255 HHQGWEGQRLSYHGVYFAVEDIGRLAELPDLHPHQFRHTSATEYLRMGLDPAHARRLTGH 314 Query: 314 KTVDQAETYTKGADR 328 YT A++ Sbjct: 315 TDERSFRRYTVAAEQ 329 >gi|320161568|ref|YP_004174792.1| putative site-specific recombinase [Anaerolinea thermophila UNI-1] gi|319995421|dbj|BAJ64192.1| putative site-specific recombinase [Anaerolinea thermophila UNI-1] Length = 292 Score = 95.9 bits (237), Expect = 8e-18, Method: Composition-based stats. Identities = 42/280 (15%), Positives = 90/280 (32%), Gaps = 38/280 (13%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITT--------KHIRSGVES- 125 + + + + + + Q R + R + + R+ +++ Sbjct: 4 LQAFEAWLREQDRSDVTVRGYLADMSQFERWFEQTNGRGLRVEDVTPADVREYRAWLQTV 63 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 +K + ++ + L ++R +W + + NP ++ P+ + + + + Sbjct: 64 QKASAATIRRRLMALRAYCRWGMAAGKIERNPTARLKMPREEKLSPGWLERSEQWRLVRE 123 Query: 186 WSEG-----SQPRLAFE--------FLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQK 228 G + R FLL++GLR S++C V +Q +++ K Sbjct: 124 AERGIQAADTPARRRLAVRDWALVVFLLHTGLRVSEACAVEVSDVQMGERSGWVQVRSGK 183 Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQK-----MNATQFSIWFKAKATKAGVN 283 V L + L + Q M + +AGV Sbjct: 184 GAKARKVPLNAEARRALKA-------WLEERGGQPGRMFEMTVSGVQRRLAEMGRRAGVE 236 Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 H +R A DAG E+ A G +++ Y Sbjct: 237 VHPHTLRHTLAKNLVDAGVGLQEVAALLGHSSLNATRVYV 276 >gi|291531296|emb|CBK96881.1| Site-specific recombinase XerD [Eubacterium siraeum 70/3] Length = 391 Score = 95.9 bits (237), Expect = 8e-18, Method: Composition-based stats. Identities = 51/294 (17%), Positives = 94/294 (31%), Gaps = 40/294 (13%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKH 128 TL + + ++ ++ S+++ +QI GD +TT+ ++ + K Sbjct: 70 TLGEWLDRWINEYMIFTIRESTLDSYKAMIKNQIKPYLGDRPLSALTTQELQKFYNTVKK 129 Query: 129 TPSS----------AIQFLTSMRVLFKWA----VRQEYVAINPCLSVERPKRKTEGIRPW 174 A + + ++ A VR + NP + PK + Sbjct: 130 KGRVKPDKLHGTELADSMVRGIHMMLHEALDMAVRLRLIVKNPTVGTTIPKNNYPPKQIL 189 Query: 175 TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK------ 228 E +++F + + F L +GLR + C + +K ++ Sbjct: 190 NDEQLERFMKRIRQDKRWYDFFYTELTTGLRRGEICGLKWEDFDAENGKLKVRRSVAKRK 249 Query: 229 ------------TGTIITVELPDGFMKLLAMTPIGKET--FFIN--NDKQKMNATQFSIW 272 TGT T+ LP +LL + F N + M+ Sbjct: 250 GGGLNIGETKTETGTR-TIVLPPSTAELLRKRKETAVSEWIFPNIYEPENPMHPDYAYHR 308 Query: 273 FKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTK 324 K +A + H +R AT + G A L G +TYT Sbjct: 309 LKTLLKQAELPLIRFHDLRHTFATHALAGGVDAKTLSGILGHTNASFTLDTYTH 362 >gi|295107192|emb|CBL04735.1| Site-specific recombinase XerC [Gordonibacter pamelaeae 7-10-1-b] Length = 427 Score = 95.9 bits (237), Expect = 8e-18, Method: Composition-based stats. Identities = 51/375 (13%), Positives = 107/375 (28%), Gaps = 80/375 (21%) Query: 25 FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHW 84 +RK R + + + Y + + ++ R T+ + + Sbjct: 46 YRKSPSRTVHGTKSEATKALMEYRAEIMDASAVRP-------SDITIGEYAVRFHEEREH 98 Query: 85 GSLAVNS--RISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS--- 139 + + R ++E +I G + +++ T +RS + ++ + Sbjct: 99 EFRSPLAWNREAYE--IKRIAEAFGAYRLQELDTLTLRSAYSRMRKEGATESRLHRVHQK 156 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW--SEGSQPRLAFE 197 + + AV VA NPC + P+ K + T ++ Q+ S S P A Sbjct: 157 LSQIMNQAVDDGLVAKNPCSPISIPRPKPKERHSLTVDEAQRLNSIILGLPASAPHCAVL 216 Query: 198 FLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQ-----------KTGTIITVELPDGFMKL 244 L++G+R + +H+ + Q + + L + Sbjct: 217 LALHTGMRRGEVLGLTWEHVHFDKRRLYVAQQYACDKVPRDPKSKKSKRWISLDSEIVAY 276 Query: 245 L--------------------------AMTPIGKETFFINNDKQKMNATQFSIWFKAKAT 278 L A+ K N + F WF+ Sbjct: 277 LEEWKRTQRIELENRKRRLDREDTDAIAILQTEKSPVVTNVYGGYYDPNIFGRWFREFCV 336 Query: 279 KAG------------------VNKS------AHGVRKFSATISADAGATAHELMATYGWK 314 + G + ++ H +R AT+ GA + G Sbjct: 337 ENGFGEQGRAIRYVDSRGIPRIKRTGYEGLKFHELRHTQATLLISNGADIKTVQNRLGHS 396 Query: 315 TVD-QAETYTKGADR 328 T + Y ++ Sbjct: 397 TAALTMDIYAHAIEQ 411 >gi|153006817|ref|YP_001381142.1| phage integrase family protein [Anaeromyxobacter sp. Fw109-5] gi|152030390|gb|ABS28158.1| phage integrase family protein [Anaeromyxobacter sp. Fw109-5] Length = 365 Score = 95.9 bits (237), Expect = 8e-18, Method: Composition-based stats. Identities = 41/262 (15%), Positives = 84/262 (32%), Gaps = 27/262 (10%) Query: 84 WGSLAVNSRISFESY------FDQIIRKSGDFDYRKITTKHIRSGVESR---------KH 128 W + +R +S+ ++ G K+T K + E R Sbjct: 72 WKAWEPITRRDNDSWRSDVDRARHLVEHLGSRRAAKLTRKDVEEYREKRFEETTRRGGPP 131 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 P + + + ++ +A+ + NP +V +++ Sbjct: 132 APGTIDREIALLKRCINFAIECGTLVRNPIAAVPLLNEPNTRDMVLKPVMLERILKAAPP 191 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ----KTGTIITVELPDGFMKL 244 P EF +GLR ++ + + + I+ KT V L +++ Sbjct: 192 TFAP--VIEFDYETGLRKTELRFLRWEQVDLGLGCIRLSAKETKTNEARVVYLTSRALEI 249 Query: 245 LAMTPIG--KETFFIN-NDKQKMNATQFSIWFKAKATKAGVNKSA-HGVRKFSATISADA 300 L TP F+N + + + + + +AG H +R+ T + + Sbjct: 250 LRATPRQLHSPYVFVNPDTGRPWSE--HNKMLRRACERAGYAGIWFHDLRRSFVTNARRS 307 Query: 301 GATAHELMATYGWKTVDQAETY 322 G +M G KT + Y Sbjct: 308 GVPESVVMKLSGHKTRSVFDRY 329 >gi|319744124|gb|EFV96497.1| phage integrase family site-specific recombinase [Streptococcus agalactiae ATCC 13813] Length = 384 Score = 95.9 bits (237), Expect = 8e-18, Method: Composition-based stats. Identities = 56/349 (16%), Positives = 108/349 (30%), Gaps = 54/349 (15%) Query: 19 GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEY 78 GK YY ++G R A+ +A+ +++ + T + L + Sbjct: 26 GKKKYYTKRGFKTRKAAK---------AHETAVNHQLNSGTFVHITAQTTYTYQELYQRW 76 Query: 79 RKSAHWGSLAVNSRISFESYFDQ--IIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQF 136 + + + + + I+ G+ KI+ ++ + + T + Q Sbjct: 77 YE--AYKDTVEATTAVKTADLYRLHILPVFGEKKISKISPLDCQTFITDKAKTFKNMKQI 134 Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR-PWTKEDMQQFKSFWSEGS--QPR 193 + +F++A+ Y+ NP V PK K WT +++ F + E + Sbjct: 135 KSYTSKIFEFAINMNYIERNPMSKVIMPKLKKTVSENYWTVDELHHFLTIILENEPYKHY 194 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT----------------VEL 237 F L YSGLR + + + + K+ I + L Sbjct: 195 ALFRLLAYSGLRKGELYALKWEDFDSENQLLTVSKSLGRIDGHAIEKGTKNIFSVRSIYL 254 Query: 238 PDGFMKLLAMTPIGKET---------------FFINNDKQ-----KMNATQFSIWFKAKA 277 D +L F + ++A + K Sbjct: 255 DDETCSILNKWKQETSREKWQLSVQPLSLDKEFMFTYYNRDGEVEPLHADYINNILKRII 314 Query: 278 TKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324 K + K S HG R AT+ + G G + +TY+ Sbjct: 315 RKHNLKKISPHGFRHTHATLMIEMGIDPVNTAKRLGHASSQMTLDTYSH 363 >gi|218442469|ref|YP_002380790.1| integrase [Cyanothece sp. PCC 7424] gi|218175240|gb|ACK73971.1| integrase family protein [Cyanothece sp. PCC 7424] Length = 304 Score = 95.9 bits (237), Expect = 8e-18, Method: Composition-based stats. Identities = 48/308 (15%), Positives = 104/308 (33%), Gaps = 37/308 (12%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH- 128 TL L++++ + L+ N+ S+ES ++++ G +T + + + H Sbjct: 4 TLASLVTQFLERPQ---LSQNTIRSYESTLMPLLQQLGSVKVDLLTRQQLIEYLSGLTHL 60 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT--------EGIRPWTKEDMQ 180 + ++ + ++ L +AV Q ++ NP ++ K E IR E + Sbjct: 61 SYTTYNRHQAILQSLLNFAVEQGFLTSNPLSGLKSRKPDREKGEHSSDEPIRYLNPEQIA 120 Query: 181 QFKSFWSEGS------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTII 233 E S + + L +G R ++ ++ + + K Sbjct: 121 VLYRLLKENSYKPQIYRLQTLVTLLHRTGARIAEILALDLEEIDLKNRRFQVIGKGNKQR 180 Query: 234 TVELPDGFMKLLAMTP-----IGKETFFINND--KQKMNATQFSIWFKAKATKAGVNKSA 286 D K+L + F ++++ + ++ + + KS Sbjct: 181 WCFYSDDVAKILEIYLKHYRYTEHSALFTAQQPLSKEVSRLSYRTAYRDWSNL--IAKSP 238 Query: 287 -------HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRI 339 H +R AT EL A G + + Y K R + + Sbjct: 239 VLKGFRLHDLRHTFATE-RVGLMGIEELRALMGHENIQTTLRYQK-VTSSRAEEVAQKAL 296 Query: 340 SSVVDSDD 347 S +V+S+ Sbjct: 297 SILVNSEK 304 >gi|282600876|ref|ZP_05979981.2| putative tyrosine recombinase XerD [Subdoligranulum variabile DSM 15176] gi|282571222|gb|EFB76757.1| putative tyrosine recombinase XerD [Subdoligranulum variabile DSM 15176] Length = 322 Score = 95.9 bits (237), Expect = 8e-18, Method: Composition-based stats. Identities = 43/290 (14%), Positives = 97/290 (33%), Gaps = 20/290 (6%) Query: 50 ALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD- 108 A+ + +P ++ TL + + H+ + +++ S+++ + + G Sbjct: 19 AVRELDAVNARLIAPDRQMYTLADVYDRWSV-LHFPKITKSAQQSYKNAYRKAEPLQGRR 77 Query: 109 -FDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167 D + + I + + + K + S + L ++A+RQ+ + N + P Sbjct: 78 MMDLKTEDYQEIITDMAAHKASRSLCEKQRQLFSQLCQYAMRQDIINTNYAQGLVLPSAS 137 Query: 168 TEGIRPWTKEDMQQFKSFWS---EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224 R ++ +++ S G R+A L+Y+G+R ++ A ++ + Sbjct: 138 APQTRVLSEAEVEAIWSMADDKRLGETARIAL-VLIYTGMRLNELLTARRTNVHLEAGYL 196 Query: 225 KTQKT---GTIITVELPDGFMKLLAMTPIGKET--FFINNDKQKM----NATQFSIWFKA 275 + G + L + G +T + F K Sbjct: 197 VGGEKTEAGRDRVIPLHTDVQPFIREWLNGNDTDFLIPSKYGIPRDHNNVRKSFGSLMKK 256 Query: 276 KATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324 + GV H R +AT +G + G + YT Sbjct: 257 LEIQ-GVK--PHTCRHTAATKMMASGLAPEVVKQILGHADITTTLNIYTH 303 >gi|149184521|ref|ZP_01862839.1| phage integrase [Erythrobacter sp. SD-21] gi|148831841|gb|EDL50274.1| phage integrase [Erythrobacter sp. SD-21] Length = 299 Score = 95.9 bits (237), Expect = 8e-18, Method: Composition-based stats. Identities = 41/261 (15%), Positives = 84/261 (32%), Gaps = 22/261 (8%) Query: 86 SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP------SSAIQFLTS 139 + ++ ++ ++++ + ++ +I +SA + L++ Sbjct: 19 RRSPHTVRAYHKAAERLLSRLHLHEFDQIAELSAGKLRTHLASRRSDGLSNASAARELSA 78 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED-------MQQFKSFWSEGSQP 192 ++ +A Q + P+ K RP T +D +++ G++ Sbjct: 79 LKSFIGFARAQAGHEQTDAPRMRGPRLKKGLPRPVTPDDAIGLAETIEELAVDGWVGARD 138 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM----- 247 R L +G+R S++ L T K V L +A Sbjct: 139 RAVLLLLYGAGMRISEALSLKGGDLPLGETLTVTGKGNKQRVVPLLPLVRDSVATYVKQC 198 Query: 248 -TPIG-KETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGAT 303 P+G K+ F ++ G+ + H +R AT AGA Sbjct: 199 PWPLGPKDPLFRGVKGGVLSQGVVQKATARARRALGLPDTATPHALRHSFATHLLGAGAD 258 Query: 304 AHELMATYGWKTVDQAETYTK 324 L G ++ + YTK Sbjct: 259 LRSLQELLGHASLGSTQIYTK 279 >gi|34451618|gb|AAQ72365.1| putative integrase [Thermus sp. R] Length = 391 Score = 95.9 bits (237), Expect = 8e-18, Method: Composition-based stats. Identities = 49/254 (19%), Positives = 90/254 (35%), Gaps = 33/254 (12%) Query: 86 SLAVNSRISF----ESYFDQIIRKSGDFD-YRKITTKHIRSGVESRKHTPSSAIQFLTSM 140 + + + + + G + ++ ++HIR+ + SR+ +P A + L S+ Sbjct: 97 GRSPRTAKEYLMDAGLFARWFRERHGRPPRWEEVGSQHIRAFLASREVSPYRAGRVLASL 156 Query: 141 RVLFKWAVRQEYVA--INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA--- 195 R LF++ E + +P V+RPK T ++ + + PR+A Sbjct: 157 RKLFRYLAEVEGLPLLKDPTEGVKRPKLPRRLPVYLTPPEVARLLQAAYQNRSPRVALRD 216 Query: 196 ---FEFLLYSGLRCSDSCRAGVQHL--QNNIFS--IKTQKTGTIITVELPDGFMKLLAM- 247 FL +GLR S++ L Q+ I K G V L + L Sbjct: 217 WALLAFLYGTGLRLSEALALTYADLTYQDGIPHAIRVQGKGGKERVVVLSPTAQRALHQW 276 Query: 248 -------TPIGKETFFIN----NDKQKMNATQFSIWFKAKATKAGVN----KSAHGVRKF 292 + + N + +A K A +AG+ + H +R Sbjct: 277 LKHRNLEGHPTSPYIWSHTSGPNRGKPFSARAVEAMVKRVAKRAGLKDWRRITPHKLRHS 336 Query: 293 SATISADAGATAHE 306 A+ +AG E Sbjct: 337 YASALVEAGRGIDE 350 >gi|148989772|ref|ZP_01821081.1| hypothetical protein CGSSp6BS73_01057 [Streptococcus pneumoniae SP6-BS73] gi|147924888|gb|EDK75971.1| hypothetical protein CGSSp6BS73_01057 [Streptococcus pneumoniae SP6-BS73] Length = 277 Score = 95.9 bits (237), Expect = 8e-18, Method: Composition-based stats. Identities = 38/260 (14%), Positives = 87/260 (33%), Gaps = 37/260 (14%) Query: 102 IIRKSGDFDYRKI--TTKHIRSGVESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAIN 156 ++ G Y I +H+R V P ++ + + ++ +F +R+ Y + N Sbjct: 1 MVDNVGKLTYEDIYQFREHLRQKVAKNSDKPLSTNTINKIMILLKKIFDVGLRKGYYSSN 60 Query: 157 PCLSVERPKRKTEGIRPWTKEDMQQFKSFW-SEGSQPRLAFEFLLYSGLRCSDSCRAGVQ 215 P +++ + ++ WT ++ Q+F + + E +L F L ++GLR ++ Q Sbjct: 61 PAKLIKKLPIEKTKMQFWTVKEFQKFLTLFEPEEYNIKLLFTVLFFTGLRLGEALALTWQ 120 Query: 216 HLQ---------------NNIFSIKTQKTGTII-TVELPDGFMKLLAMTPIGKETFFINN 259 + + I T KT + + + L ++ Sbjct: 121 DIDFSSNTIHITKSVYVNKGVTHISTTKTKAGTRRIVINKKLSQELQDWEKRQKHLLEQF 180 Query: 260 DKQKMNATQFSI------------WFKAKATKAGV--NKSAHGVRKFSATISADAGATAH 305 + F +K + + H R A++ + G Sbjct: 181 TNNSLTLQVFQNSPITITKNAIEKQYKKIIERDSILKKIRIHDFRHSHASLLINQGEDYL 240 Query: 306 ELMATYGWKTVDQA-ETYTK 324 + G ++ +TY+ Sbjct: 241 VVKERLGHASITTTIDTYSH 260 >gi|260855381|ref|YP_003229272.1| putative integrase [Escherichia coli O26:H11 str. 11368] gi|257754030|dbj|BAI25532.1| putative integrase [Escherichia coli O26:H11 str. 11368] Length = 426 Score = 95.9 bits (237), Expect = 8e-18, Method: Composition-based stats. Identities = 46/317 (14%), Positives = 99/317 (31%), Gaps = 64/317 (20%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK-ITTKHIRSGVESR-- 126 T+K L ++ +A S ++ + I+ G+ + I + + + + Sbjct: 80 TIKELAEKFLALKE-TEVAKTSLNTYRAVIKNILSIIGEKNLASSINKEKLLAVRKELLT 138 Query: 127 --------------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172 + + ++T++ +F++ V Y+A NP + K Sbjct: 139 GYQIPKSNYIVTQPGRSAVTVNNYMTNLYAVFQFGVDNGYLADNPFKGISPLKESRTIPD 198 Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIK----- 225 P ++E+ + Q + + +Y+G+R + C G + + N I+ Sbjct: 199 PLSREEFIRLIDAC-RNQQAKNLWCVSVYTGIRPGELCALGWEDIDLKNGTMIIRRNLAK 257 Query: 226 --------TQKTGTIITV--ELPDGFMKLLAMTPIGKETFF------------------- 256 T +I + D +A+T + KE Sbjct: 258 DRFTVPKTQAGTNRVIHLIKPAIDALRSQMALTRLSKEHIIDVHLREFGRTEKQKCTFVF 317 Query: 257 -------INNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELM 308 + N + A +AG+ ++ ++ R A S AGA + Sbjct: 318 QPEVSAKVKNYGDHFTVDSIRQMWDAAVKRAGIRHRKSYQSRHTYACWSLTAGANPAFIA 377 Query: 309 ATYGWKTVDQA-ETYTK 324 G + Y K Sbjct: 378 NQMGHADAQMVFQVYGK 394 >gi|188492966|ref|ZP_03000236.1| integrase [Escherichia coli 53638] gi|188488165|gb|EDU63268.1| integrase [Escherichia coli 53638] Length = 358 Score = 95.9 bits (237), Expect = 8e-18, Method: Composition-based stats. Identities = 42/276 (15%), Positives = 89/276 (32%), Gaps = 26/276 (9%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--K 127 T+ I Y+ ++ N+ + + I K G+ +ITT+HI ++ Sbjct: 75 TMADWIERYKTILIRRKVSRNTYKIRANQLETIKEKLGEILLTEITTRHIAEFLDLWIEG 134 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK--RKTEGIRPWTKEDMQQFKSF 185 + A + + +F+ A+ + ++ NP PK E ++ T +++ Sbjct: 135 GKNTMAGSMRSVLSDMFREAIVEGRISQNPVTPTRAPKIVVTRERLKLKTYNCIREAADQ 194 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL- 244 LA + L +G R D + ++ ++ KTG +I + L Sbjct: 195 LPAWFP--LAMDLALVTGQRREDITNMRFSDIYDDRLHVRQIKTGMMIAIPLSLSLPVAG 252 Query: 245 -------LAMTPIGKETFFINNDKQKMN------ATQFSIWFKAKATKAGV-----NKSA 286 + + + I+ +K + + F A G+ + Sbjct: 253 LRLGTVVERCRLVSRGDYLISAGIRKNSPDGSIHPDGLTKKFVAARKFTGIQFSENPPTF 312 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 H +R A G + + Y Sbjct: 313 HEIR-SLAGRLYKETCGEEFAQRLLGHTSEKTTKMY 347 >gi|268610904|ref|ZP_06144631.1| integrase family protein [Ruminococcus flavefaciens FD-1] Length = 391 Score = 95.9 bits (237), Expect = 8e-18, Method: Composition-based stats. Identities = 49/308 (15%), Positives = 101/308 (32%), Gaps = 61/308 (19%) Query: 73 WLI---SEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKH 128 WL +Y K + + + +++++Y I G + + T ++S + Sbjct: 72 WLCTWLDQYCK----IEVKLTTYVNYDTYVHRHIKNTIGGYKLCDLNTSIMQSFFNEKAE 127 Query: 129 ----------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 +P + M AV + + NP V PKR+ +R T ++ Sbjct: 128 NGKLHSSGGLSPKTIKNMHDMMHRALDKAVHLDMIIKNPTDFVTLPKRRKSEMRFLTIDE 187 Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL-----QNNIFSIKT------- 226 ++ + G + + LY+G+R + +++ + Sbjct: 188 QKKLQEALK-GDRLEMPVLLALYTGMRQGEIFGLKWKYVHIESTDRAWLRVVQAVNRFSN 246 Query: 227 ------QKT----------GTIITVELPDGFMKLLAMTPIG------------KETFFIN 258 +KT +I T+ L + L E F Sbjct: 247 RTDDGKRKTFLSLSEPKTPHSIRTIPLMPYIAERLTEYKCEQEQHFKDNGLPMSEMVFTT 306 Query: 259 NDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVD 317 + ++ F FK + G+++ + HG+R AT + ++G L G +V Sbjct: 307 KNGNLVDPRNFQRDFKLLLKRNGLHEINVHGLRHTFATRALESGMNVKTLSKILGHSSVA 366 Query: 318 -QAETYTK 324 +TY Sbjct: 367 FTLDTYAH 374 >gi|311744114|ref|ZP_07717920.1| integrase/recombinase XerD [Aeromicrobium marinum DSM 15272] gi|311313244|gb|EFQ83155.1| integrase/recombinase XerD [Aeromicrobium marinum DSM 15272] Length = 306 Score = 95.9 bits (237), Expect = 8e-18, Method: Composition-based stats. Identities = 40/291 (13%), Positives = 93/291 (31%), Gaps = 28/291 (9%) Query: 71 LKWLISEYRKSA-HWGSLAVNSRISFESYFDQIIRK---SGDFDYRKITTKHIRSGVESR 126 ++++Y L+ ++ S+ + G D +T + +RS + + Sbjct: 8 WAQILADYEHHLTRERDLSPHTVRSYLVDVRGLAEHATRLGIHDPAAMTIRTLRSHLATL 67 Query: 127 K---HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 K ++ + T++RV W R ++ + P + + DM++ Sbjct: 68 KSLGRARATLSRRATALRVFTAWLQRSGRADLDVGALLASPAARRTLPATLSAADMREVL 127 Query: 184 SFWSE--------GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG----- 230 + G++ E L +G+R + + + + ++ G Sbjct: 128 DAATAMIDGDPVTGTRDLAILELLYATGVRVGELVGLDLDDVDRSRRVVRVLGKGRKERT 187 Query: 231 TIITVELPDGFMKLLA------MTPIGKETFFINNDKQKMNATQFSIWFKAK--ATKAGV 282 + D LA TPI + +++ + A Sbjct: 188 VPFGLPAQDALDAWLAVGRPAVATPISGHAVLLGVRGGRIDPRTVRQVVHDRLGAVDGVA 247 Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 + HG+R +AT + GA + G ++ + YT ++ Sbjct: 248 DLGPHGLRHTAATHLLEGGADLRSVQEVLGHASLGTTQIYTHVSNERLRAA 298 >gi|291526261|emb|CBK91848.1| Site-specific recombinase XerD [Eubacterium rectale DSM 17629] Length = 376 Score = 95.9 bits (237), Expect = 8e-18, Method: Composition-based stats. Identities = 51/347 (14%), Positives = 99/347 (28%), Gaps = 76/347 (21%) Query: 47 YMSALTGSTPKREYINSPR-------KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF 99 Y L K + I + + TT+ L + L N+ +++ + Sbjct: 7 YARTLDDLREKEKRIQKDKCDGIKTEARYTTIDELFDLWANMKR--GLKNNTFENYKYMY 64 Query: 100 DQIIRK-SGDFDYRKITTKHIRSG----VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVA 154 + +R G + I+ V+ R PS+ T + + + AV +++ Sbjct: 65 NTFVRPVIGSKRISTLKKSDIKKYYNYLVDERNLKPSTIDNIHTVLHQVLQIAVDDDFIR 124 Query: 155 INPCLSVER-PKR----KTEGIRPWTKEDMQQFKSF---WSEGSQPRLAFEFLLYSGLRC 206 NP +V R K+ ++E R TK + + F +F F ++ +GLR Sbjct: 125 NNPSDNVLRELKKAHCFQSEKRRALTKPEQELFLNFLKTHPAYEHWYPVFAVMIGTGLRV 184 Query: 207 SDSCRAGVQHLQNN------------------------IFSIKTQKTGTIIT-VELPDGF 241 + + F++ T KT + V + Sbjct: 185 GEVTGLRWCDIDMESGMIDVNHTLVYYDHRTEGSKSGCYFNVNTTKTPASMRQVPMLGFV 244 Query: 242 MKLLAMTPIGKET---------------FFINNDKQKMNATQFSIWFKAKATKAG----- 281 + +E FIN Q + + + Sbjct: 245 REAFEQEKQKQEDLGLHCEVTIDGYTDFIFINRFGQAQHQATLNKAIRRIIRDCNDEQFL 304 Query: 282 ---------VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319 + S H +R T +AG + G + Sbjct: 305 HSDEPDVLLPHFSCHSLRHTFTTRMCEAGVNIKVIQDALGHSDISTT 351 >gi|269928745|ref|YP_003321066.1| integrase family protein [Sphaerobacter thermophilus DSM 20745] gi|269788102|gb|ACZ40244.1| integrase family protein [Sphaerobacter thermophilus DSM 20745] Length = 376 Score = 95.9 bits (237), Expect = 8e-18, Method: Composition-based stats. Identities = 50/330 (15%), Positives = 105/330 (31%), Gaps = 38/330 (11%) Query: 51 LTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDF 109 L + +++Y + T+K + + + SL + S+ + G Sbjct: 49 LARALVEQQYGLPVVSERETVKDYLERWLEDVARPSLRPRTYESYRGIITRHLTPALGRT 108 Query: 110 DYRKITTKHIRSGVESRKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166 +++ ++ + ++ +P + +R A+R V+ N PK+ Sbjct: 109 RLARLSPDQVQRYINQKQAAGLSPRTVTYHRAVLRKALNDAMRWGLVSRNAAALAAPPKQ 168 Query: 167 KTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226 R T E+ + F G + F L GLR ++ + ++ Sbjct: 169 DRPPARFLTPEEARHFLDTV-AGHRLEALFTVALAVGLRQGEALGLRWDDVDLEAGTLTV 227 Query: 227 Q---------------KTG-TIITVELPDGFMKLLA-----------MTP--IGKETFFI 257 + KT + TV LP ++ L P + F Sbjct: 228 RYALQRSGGALVLVEPKTQRSRRTVALPAVALRALREHRTRQLEERIAAPYWDDQGFVFT 287 Query: 258 NNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTV 316 + ++A + F +AG+ H +R A++ G +M G + Sbjct: 288 STIGTAIDARNLTREFHRLRAEAGLPWLRFHDLRHGCASLLMAQGVNPRVVMEILGHSQI 347 Query: 317 D-QAETYTKGADRIRLGIKNSRRISSVVDS 345 TY+ A L + +I ++ Sbjct: 348 TLTLGTYSHVA--PTLARDAADKIDGILGV 375 >gi|253681402|ref|ZP_04862199.1| putative integrase/recombinase [Clostridium botulinum D str. 1873] gi|253561114|gb|EES90566.1| putative integrase/recombinase [Clostridium botulinum D str. 1873] Length = 274 Score = 95.9 bits (237), Expect = 8e-18, Method: Composition-based stats. Identities = 45/262 (17%), Positives = 88/262 (33%), Gaps = 25/262 (9%) Query: 88 AVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSG----VESRKHTPSSAIQFLTSMR 141 + + S+ Q K+ KI I + ++ + + L S++ Sbjct: 18 SEKTIDSYIRDISQFNDYLKTNKKKLAKIKISDIDEFKNFLIYHKELKIKTINRKLVSIK 77 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGI--RPWTKEDMQQFKS--FWSEGSQPRLAFE 197 K+ N + +++ K + + + +D++ + + + R Sbjct: 78 QYLKF--------NNISVDIKQEKVQMQNFLDDMLSNQDIENIIKATYAKDDLRARTIIY 129 Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL---LAMTPIGKET 254 L Y+G+R S+ + + + + SI K V +P+ + I K T Sbjct: 130 TLYYTGMRVSEMLQLTIYDTKKSSISII-GKGSKHREVFVPNKLKTIWDNYLQVRIKKST 188 Query: 255 FFINNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISADAGATAHELMATY 311 + +N K A AGV+KS AH R AD G + Sbjct: 189 ALFTGKRGPINRKTVDSIIKTYAEAAGVDKSKAHAHNFRHLYCKNLADRGIDISTIADIA 248 Query: 312 GWKTVDQAETYTKGADRIRLGI 333 G + ++ YT+ L I Sbjct: 249 GHQNINTTRIYTRKTKEELLNI 270 >gi|27375557|ref|NP_767086.1| site-specific tyrosine recombinase XerC [Bradyrhizobium japonicum USDA 110] gi|34222842|sp|Q89X68|XERC_BRAJA RecName: Full=Tyrosine recombinase xerC gi|27348694|dbj|BAC45711.1| xerC [Bradyrhizobium japonicum USDA 110] Length = 321 Score = 95.9 bits (237), Expect = 8e-18, Method: Composition-based stats. Identities = 38/280 (13%), Positives = 83/280 (29%), Gaps = 35/280 (12%) Query: 85 GSLAVNSRISFESYF----DQIIRKSGD----FDYRKITTKHIRSGVESRKH---TPSSA 133 L+ + ++ D + G+ + + +R+ + R+ S Sbjct: 33 RRLSPKTLEAYGRDLRQCLDFLCNHWGERVTLKRFAALEATDVRAFMAMRRADDIAGRSL 92 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193 ++ L +R ++ R+ + ++ PK +P ++ + R Sbjct: 93 MRALAGLRSFGRFLEREGKGKVGALSAIRAPKVAKSLPKPLPMASAKRLADADERAGEER 152 Query: 194 ---------LAFEFLLYSGLRCSDSCRAGVQHL---QNNIFSIKTQKTGTIITVELPDGF 241 L SGLR S++ + + + T K V + Sbjct: 153 ETWILARDAAVMALLYGSGLRISEALGLKRREVPKPGEGDVLVVTGKGNKTRMVPVLQNV 212 Query: 242 MKLLA--------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRK 291 + L+ P F+ ++ + + G+ + H +R Sbjct: 213 LALVQEYVSMCPYPLPAEGP-IFVGARGGPLSPRIIQLAMERLRGALGLPDSATPHALRH 271 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 AT G + G ++ + YT G D RL Sbjct: 272 SFATHLLSRGGDLRAIQELLGHSSLSTTQIYT-GIDSERL 310 >gi|108799889|ref|YP_640086.1| phage integrase [Mycobacterium sp. MCS] gi|119868999|ref|YP_938951.1| phage integrase family protein [Mycobacterium sp. KMS] gi|108770308|gb|ABG09030.1| phage integrase [Mycobacterium sp. MCS] gi|119695088|gb|ABL92161.1| phage integrase family protein [Mycobacterium sp. KMS] Length = 379 Score = 95.9 bits (237), Expect = 9e-18, Method: Composition-based stats. Identities = 45/330 (13%), Positives = 94/330 (28%), Gaps = 44/330 (13%) Query: 48 MSALTGSTPKREYINSPRKKPTTLKWLISEYRKSA-HWGSLAVNSRISF----ESYFDQI 102 L + E + P T+ + ++R S+ ++ + + + Sbjct: 47 RKELKKVRDRIEGGAPAKDAPNTVSSWLKQWRASSLAASDRKETTKSLYATLSRKHLEG- 105 Query: 103 IRKSGDFDYRKITTKHIRSGVESRKHT---PSSAIQFLTSMRVLFKWAVRQEYVAINPCL 159 + GD ++ + + + S+ Q T +R AVR +A NP Sbjct: 106 -ARIGDKRLDRLKPSDVELLIVQLRGKNLSDSTVRQVYTVLRQALDVAVRDGLLAANPAS 164 Query: 160 SVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ- 218 V+RP + + D+ + G + L + +GLR + + Sbjct: 165 KVKRPGVARKEAKYLPAADVARLLDAAK-GLRYYLGVVLMATTGLRRGEVAGLLWSDVDL 223 Query: 219 --------------NNIFSIKTQKTG-TIITVELP------------DGFMKLLAMTP-- 249 + + KT + V L + LA Sbjct: 224 EKGELTVRHTLSRVDGKLVLTEPKTDRSRRRVPLHAGVVAQLKMHRTQQLQERLAAGDQW 283 Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELM 308 ++ + A K G+ + AH +R +A ++G Sbjct: 284 RDTGAVLATEFGTLLDPRNLLRTVEIAAAKVGIEDVGAHTMRHSAAVAWLESGVHIKAAA 343 Query: 309 ATYGWKTVDQA-ETYTKGADR-IRLGIKNS 336 G ++ + Y +D R + Sbjct: 344 DLLGHSSIAITGDLYGHTSDETARAAVDGL 373 >gi|302345845|ref|YP_003814198.1| site-specific recombinase, phage integrase family [Prevotella melaninogenica ATCC 25845] gi|302149964|gb|ADK96226.1| site-specific recombinase, phage integrase family [Prevotella melaninogenica ATCC 25845] Length = 418 Score = 95.9 bits (237), Expect = 9e-18, Method: Composition-based stats. Identities = 34/208 (16%), Positives = 70/208 (33%), Gaps = 10/208 (4%) Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 + ++A + + + K A Y+ I+ ++ + + T +++ + + E Sbjct: 199 SRNTASTYFSIFKAALKQAFIDGYLTIDLSAKIKGIQEQESRREYLTLDELNKLANTPCE 258 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI----FSIKTQKTGTIITVELPDGFMKL 244 + A F +GLR D + + +KT + + + + KL Sbjct: 259 RDVLKRAALFSALTGLRHCDIQKLKWDEIAIEGNQAKLLFTQKKTKGVEYMPISEQAFKL 318 Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302 ++ F + +A KAG+ K S H R AT+ G Sbjct: 319 CGEPRQPEQLVFEGLPNPSWISRPL----RAWIEKAGIQKHLSFHCFRHTFATLQLANGT 374 Query: 303 TAHELMATYGWKTVDQAETYTKGADRIR 330 + + G V + Y K D + Sbjct: 375 DIYTVSKMLGHTNVKTTQVYAKVVDEKK 402 >gi|145594863|ref|YP_001159160.1| phage integrase family protein [Salinispora tropica CNB-440] gi|145304200|gb|ABP54782.1| phage integrase family protein [Salinispora tropica CNB-440] Length = 322 Score = 95.9 bits (237), Expect = 9e-18, Method: Composition-based stats. Identities = 49/308 (15%), Positives = 99/308 (32%), Gaps = 44/308 (14%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD----------FDYRKITTKHIRSGV 123 LI ++ + ++ ++ + + D + ++ +RS Sbjct: 4 LIEDFLTDRATRKPSPHTVEAYRRDLRTVASIAADALTSPLPLDALPLAALHSRTLRSAF 63 Query: 124 ESRKHTPSSAI--QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM-Q 180 T S+A + ++ F + V VA NP +V RP+ +P D + Sbjct: 64 AHFAATRSAASVHRAWSTWNSFFVFLVADGVVAGNPMPAVGRPRAPLPRPKPLRGADTPE 123 Query: 181 QF---------KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK---TQK 228 Q + + L GLR ++ V L + + K Sbjct: 124 QLLTAVARVDGRQRDPWPQRDLAVLALALCGGLRLAEMLALRVASLAGRVGERRLDVAGK 183 Query: 229 TGTIITVELPDGFMKLLA------------MTPIGKETFFINNDKQKMNATQFSIWFKAK 276 G V + ++LA T ++ + + Sbjct: 184 GGRPRVVPVEPELDQVLADYLESCRRRFGSATVRPDAPLLMDRRGGPLRRGGLQYLVDSC 243 Query: 277 ATKAGVN------KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRI 329 +AG+ H +R AT A+ GA+A E+M G ++ ++ Y + A + Sbjct: 244 FRRAGIGDRVPQGARLHALRHTFATRLAEDGASAAEIMRLLGHVSLASSQAYIEVTAGQQ 303 Query: 330 RLGIKNSR 337 R ++ +R Sbjct: 304 RAAVRANR 311 >gi|94267190|ref|ZP_01290806.1| Phage integrase [delta proteobacterium MLMS-1] gi|93452099|gb|EAT02779.1| Phage integrase [delta proteobacterium MLMS-1] Length = 406 Score = 95.9 bits (237), Expect = 9e-18, Method: Composition-based stats. Identities = 47/341 (13%), Positives = 120/341 (35%), Gaps = 30/341 (8%) Query: 11 VTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT- 69 + R ++ Y +G RRI L + + + A ++ + ++ ++ K+ Sbjct: 29 LVLPSGRRSWLLRYQFEGKPRRITLGEYPDMSLLQARNASEATRSIIKQGLDPALKRTEE 88 Query: 70 --------TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121 T+ L++EY + + + ++ G +IT + Sbjct: 89 KTAHKTSPTVSDLLTEYW-DMELKE-SPSGKERRRLVEKDVLPPWGKRKVAEITRRDAAL 146 Query: 122 GVES-RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 +++ R P + + + +F +A + + +P + + + K + R ++++ Sbjct: 147 LLDTVRARAPVTGNRLQGVLVRMFNFAAERGVLEHSPLMGLRKKKEQPRS-RVLADKEIK 205 Query: 181 QFKSFWSEGSQP-------RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ--KTGT 231 + + +LA + +L +G R + C + + ++I + K+ Sbjct: 206 LLWDALALDNTAMDIYRVSKLALKMILLTGQRPGEVCGMTWDEIDGDTWNIPAERMKSKE 265 Query: 232 IITVELPDGFMKLL----AMTPIGKETFFINNDKQ--KMNATQFSIWFKAKATKAGVNK- 284 V L ++++ +P G F ++ + + S + GV + Sbjct: 266 PHNVPLGSMALEIIEQARRYSPRGSTFVFKSSHFKEGPITPHSLSKAILRHWQEMGVTER 325 Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 + H +R+ T A+ G G K Y + Sbjct: 326 FTPHDLRRTLRTRLAEIGVDDVVGERVLGHKLQGIMAVYNR 366 >gi|320353450|ref|YP_004194789.1| integrase family protein [Desulfobulbus propionicus DSM 2032] gi|320121952|gb|ADW17498.1| integrase family protein [Desulfobulbus propionicus DSM 2032] Length = 357 Score = 95.9 bits (237), Expect = 9e-18, Method: Composition-based stats. Identities = 52/316 (16%), Positives = 103/316 (32%), Gaps = 26/316 (8%) Query: 49 SALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG- 107 AL + + L +EY + A + + F Q+ G Sbjct: 35 DALLWEAERPTEPAEQKTLTVCLLDWATEYLRHAE-QNFTGKTFDEKRIAFRQLFACPGI 93 Query: 108 --DFDYRKITTKHIRSGVESRK--HTPSSAIQFLTSMRVLFKWAVR-QEYVAINPCLSVE 162 ++T ++ ++ + + ++A + ++ + W V+ + NP VE Sbjct: 94 NPKESANRLTALQVQKALQRQSVSRSGNAANKDRKNLSAAWSWGVKFLDLPIDNPFSKVE 153 Query: 163 RPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NN 220 + + T +D + + Q +L L +G R + R + Sbjct: 154 KFASERVERYVPTLDDFWKIFHIIED-DQDKLMLYCYLQTGARRDELFRLTWADVDFFRK 212 Query: 221 IFSIKTQKTGT----IITVELPDGFMKLLAMTPIG----KETFFINNDKQKMNATQFSIW 272 + +K + + D ++ L KE FI QK++ W Sbjct: 213 RIRLSWRKNKVGEWRSQWLSVKDDLVEWLLRHRKKSCDIKEHVFIRE--QKLSYQYRQHW 270 Query: 273 FKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 K KAGV HG+R A+I A E+ ++ + Y RL Sbjct: 271 LKRLCKKAGVKPFGFHGIRHLFASILAAQNVPLVEIQYMLRHTSLATTQRYIH-----RL 325 Query: 332 GIKNSRRISSVVDSDD 347 +N ++++ D Sbjct: 326 KKENREVLAALPGLKD 341 >gi|310826020|ref|YP_003958377.1| hypothetical protein ELI_0397 [Eubacterium limosum KIST612] gi|308737754|gb|ADO35414.1| hypothetical protein ELI_0397 [Eubacterium limosum KIST612] Length = 359 Score = 95.9 bits (237), Expect = 9e-18, Method: Composition-based stats. Identities = 48/294 (16%), Positives = 99/294 (33%), Gaps = 44/294 (14%) Query: 91 SRISFESYFD-QIIRKSGDFDYRKITTKHIRSGV----ESRKHTPSSAIQFLTSMRVLFK 145 + ++ +I G+++ + ITT+ ++ V E P++ + + K Sbjct: 44 TLENYRRQVRVHLIPMLGEYEVQDITTEVLQDFVFYLEEENGLNPTTVKNIFGRIATVLK 103 Query: 146 WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW--SEGSQPRLAFEFLLYSG 203 A + NPC SV PK + + + + + EGS+ L+ L+SG Sbjct: 104 KAHEDGIIFENPCNSVVLPKANARTGKALNRLEQDKLEKVLSNDEGSKT-LSVYIALHSG 162 Query: 204 LRCSDSCRAGVQHLQ--NNIFSIK-------------TQKT----------GTIITVELP 238 LR S+ + + N ++ T K+ ++ ++ + Sbjct: 163 LRISEVTALKWKDIDMENEFIYVRHSFQRISQQMTDGTHKSSLLLGKPKSLKSVRSIPMN 222 Query: 239 DGFM-------KLLAMTPIGKETFFINN-DKQKMNATQFSIWFKAKATKAGVNKS-AHGV 289 D K L E F I+ + + +F A ++ H + Sbjct: 223 DLLAMKIKEYYKGLEKWQRKGEMFVISKGNGSFYDVRTIQRYFNDVCKVACIDHHHFHDL 282 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRL-GIKNSRRISS 341 R AT + G + G + + Y +D + I+ R++ Sbjct: 283 RHTFATNAKACGIDIQLISEMLGHAQIKTTMDIYVHPSDTDKQNAIQLMNRLNK 336 >gi|295087104|emb|CBK68627.1| Site-specific recombinase XerD [Bacteroides xylanisolvens XB1A] Length = 470 Score = 95.9 bits (237), Expect = 9e-18, Method: Composition-based stats. Identities = 33/268 (12%), Positives = 88/268 (32%), Gaps = 21/268 (7%) Query: 88 AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHTPSSAIQFLTSMRVL 143 + + + + ++++ ITT IR+ + E + + + Sbjct: 209 SDKTLAYYRNTIERLLVTL-SMAICHITTSDIRTYLSDYQEEHQSSKVTIDNMRRIFSSF 267 Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSG 203 F W ++Y+A +P + + K + + E ++Q + + + +FL +G Sbjct: 268 FAWLEDEDYIAKSPVRRIHKVKTDSLVKEVLSDEQLEQLRDSCT-NKRDLAIIDFLSSTG 326 Query: 204 LRCSDSCRAGVQHLQNNIFSIKT----QKTGTIITVELPDG----FMKLLAMTPIGKETF 255 +R + + + + F + K V + L Sbjct: 327 IRVGELVKLNREDID---FHERQCVVFGKGNKERVVYFNARTKLHLQQYLNGRTDDNPAL 383 Query: 256 FINNDKQK--MNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYG 312 F++ + + + + + K H R+ AT++ D G ++ G Sbjct: 384 FVSLHSPHTRLTISGVEVRIRKLGHTLSMPKVHPHKFRRTLATMAIDKGMPIEQVQRLLG 443 Query: 313 WKTVDQAETYTKGADRIRLGIKNSRRIS 340 +D Y ++ + + + + + Sbjct: 444 HVRIDTTLHYA-IVNQNNVKLAHKKYLG 470 >gi|163792312|ref|ZP_02186289.1| Integrase [alpha proteobacterium BAL199] gi|159182017|gb|EDP66526.1| Integrase [alpha proteobacterium BAL199] Length = 323 Score = 95.9 bits (237), Expect = 9e-18, Method: Composition-based stats. Identities = 42/285 (14%), Positives = 90/285 (31%), Gaps = 32/285 (11%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYF----DQIIRKSGDF----DYRKITTKHIRSGVESR 126 E+ KS ++ ++ ++ + + GD + R+ + R Sbjct: 29 WREWLKSE--KRVSPHTLAAYGRDLGGFVNFLAGHLGDTVNLSALGTLQPADFRAWLARR 86 Query: 127 KHT---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER-PKRKTEGIRPWTKED---- 178 SS + L+++R F++ R+ + N + V R P+ + T ++ Sbjct: 87 AGGGLEKSSTARALSTIRGFFRFLERRGLAS-NAAVGVVRGPRVPRSIPKALTVDEARDA 145 Query: 179 ---MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235 + + ++ L GLR ++ + + + T K G V Sbjct: 146 LESVGELTDEPWIAARDSAVLTLLYGCGLRVGEALDLNRRVVPLSDTLTITGKGGKARMV 205 Query: 236 ELPD----GFMKLLAMTPIG---KETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSA 286 + L P + F+ ++ A + + G+ + Sbjct: 206 PVLPVVRRAVADYLERCPYRLGPDDPLFVGVRGGRLGARRVQQSIQTLRCWLGLPETATP 265 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 H +R AT G + G ++ + YT D RL Sbjct: 266 HALRHSFATHLLAGGGDLRAIQELLGHASLSTTQRYT-EVDAARL 309 >gi|198277079|ref|ZP_03209610.1| hypothetical protein BACPLE_03287 [Bacteroides plebeius DSM 17135] gi|198269577|gb|EDY93847.1| hypothetical protein BACPLE_03287 [Bacteroides plebeius DSM 17135] Length = 418 Score = 95.9 bits (237), Expect = 9e-18, Method: Composition-based stats. Identities = 36/226 (15%), Positives = 73/226 (32%), Gaps = 11/226 (4%) Query: 111 YRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170 +R+ + G + + ++A + + + K A Y+ I+ V+ + + Sbjct: 183 FRQFIMNAPQGGTKRGTISQNTAATYFSIFKAGLKQAFIDGYLTIDISAKVKGIQERESR 242 Query: 171 IRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ----NNIFSIKT 226 T E++ + + R A L +G+R D + ++ + Sbjct: 243 REYLTVEELNRLAQTPCDPLLKRAALFSAL-TGIRHCDIQKLKWSEVEMFNGGYRLNFTQ 301 Query: 227 QKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-- 284 QKT + + + + L G+ F K AG+ K Sbjct: 302 QKTKGVEYMPISEQAYNLCGEPKEGELLVFAGLPDPSWINRP----VKKWIEAAGITKHI 357 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 + H R AT+ G + + G V + Y K D + Sbjct: 358 TFHCFRHSYATLQLAGGTDIYTVSKMLGHTNVRTTQVYAKVVDEKK 403 >gi|154499119|ref|ZP_02037497.1| hypothetical protein BACCAP_03111 [Bacteroides capillosus ATCC 29799] gi|150271959|gb|EDM99185.1| hypothetical protein BACCAP_03111 [Bacteroides capillosus ATCC 29799] Length = 417 Score = 95.9 bits (237), Expect = 9e-18, Method: Composition-based stats. Identities = 58/362 (16%), Positives = 112/362 (30%), Gaps = 61/362 (16%) Query: 22 IYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKS 81 YY R +G+R L + Y L K+ K TL +++ K Sbjct: 25 RYYDR--NGQRKYLYNSSLAVLKKEYKDVL-----KQVSTRPVVKTEYTLDEWYAQWIKV 77 Query: 82 AHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKHT---PSSAIQFL 137 + + ++R+ + + + G + +ITT ++ + K + Sbjct: 78 YKY-EVRDSTRLQYSHVYTKHVSPALGHYLLTQITTLEVKRFLNDMKKRGFSFEMRNKAR 136 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFE 197 + LF A+ ++ NP ++ + + R +KE+ F G+ F Sbjct: 137 IVLLDLFDKAIMDDFAFKNPARGIKVVRDERVEPRVLSKEEQVDFFDTCK-GTFYEELFT 195 Query: 198 FLLYSGLRCSDSCRAGVQHLQ---------------------NNIFSIKTQKTGTIITVE 236 + +GLR + + F I KT T + Sbjct: 196 VAVLTGLRPGELFALRWSDVNLKEKYLDVTRTLLYQKLEGDTGKAFHIHPPKTATSLRRV 255 Query: 237 LPDGFMKLLAMTPIGK-----------------ETFFINNDKQKMNATQFSIWFKAKATK 279 D KL M+ K + F+ +N++ +S + Sbjct: 256 YFDERCKLALMSQFRKKSNISLRETSSPLEGLEDLLFVTKYNTPLNSSLYSSAIQRIVDL 315 Query: 280 AGVNKSA---------HGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRI 329 ++SA H R AT + +A + G T+ + YT + Sbjct: 316 INESRSAVDQFETFSGHCFRHTYATRAFEADVDPKVVQKQLGHATLKMTMDLYTHLFEDK 375 Query: 330 RL 331 +L Sbjct: 376 KL 377 >gi|71901496|ref|ZP_00683583.1| Phage integrase [Xylella fastidiosa Ann-1] gi|71728752|gb|EAO30896.1| Phage integrase [Xylella fastidiosa Ann-1] Length = 353 Score = 95.9 bits (237), Expect = 9e-18, Method: Composition-based stats. Identities = 46/292 (15%), Positives = 96/292 (32%), Gaps = 30/292 (10%) Query: 7 LPPFVTKER--TRHGKII--YYF--RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY 60 LPP + + + GK+ +Y+ R GRRI +P + +AL E Sbjct: 10 LPPRMLRRIRLMKSGKVWESFYYNGRTPEGRRIEIPLGRDLNEAKRKWAALECKEAPAE- 68 Query: 61 INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120 L+++ Y + A ++ + + + + +T +HI Sbjct: 69 -------TGLLRFIFERYEREIIPLK-APVTQRVNRGFLTTLRKVFDVVNIDNVTPQHIA 120 Query: 121 SGVESRK-HTPSSAIQFLTSMRVLFKWAVRQEYVAI-NPCLSVERPKRKTEGIRPWTKED 178 + R+ TP A + ++ ++ A Y NP V + K +D Sbjct: 121 QYRDKRRLRTPVQANREISLFSHIWNMAREWGYTEKENPVKGVRKNKETPRDFYA---DD 177 Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238 + + R A + +G R +D + +++ ++ KTG + + L Sbjct: 178 AVWMAVYAKASEELRDAMDLSYLTGQRPADILKMRFTDIKDGALEVQQNKTGKKLRILLE 237 Query: 239 D-----GFMKLLAMTPIGKETFF-----INNDKQKMNATQFSIWFKAKATKA 280 K++ + F + +N F + +A Sbjct: 238 RSGIRTELGKVIDRIKARERKVFSVFLVATPNGTPLNKQTLPSRFNSARARA 289 >gi|302339270|ref|YP_003804476.1| integrase family protein [Spirochaeta smaragdinae DSM 11293] gi|301636455|gb|ADK81882.1| integrase family protein [Spirochaeta smaragdinae DSM 11293] Length = 416 Score = 95.9 bits (237), Expect = 9e-18, Method: Composition-based stats. Identities = 42/265 (15%), Positives = 85/265 (32%), Gaps = 43/265 (16%) Query: 103 IRKSGDFDYRKITTKHIRSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160 + + K+ + P + + L+ ++ + + A+ QE + +P + Sbjct: 126 CKDFVNKPIAKMRRSDVLEFRSFMLDRVGPRTVNKALSIVKAVIREAIFQEVIDRDPTIG 185 Query: 161 VERPKR-KTEGIRPWTKEDMQQFKSFWSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQ 215 V + K + + +TKE++ G F +G+R S+ + Sbjct: 186 VSKVKLTEKKEPGVFTKEELLLMFPEKGIGPWKSITDHTVFLTAASTGMRRSEILALRWE 245 Query: 216 HLQNN--------------IFSIKTQKTGTIITVELPD----GFMKLLAMTPIGKET--F 255 ++ + I K V +P L +P K++ Sbjct: 246 NVNLEKQFINVVEAFKDYRMIEIGKPKWERSRVVPIPKKLVTRLKDLRDQSPYAKDSDYV 305 Query: 256 FINNDKQKMNATQFSIWFKAKATKAGV----------------NKSAHGVRKFSATISAD 299 F D + T +S F++ GV N + H R T+ Sbjct: 306 FCYKDGTHLGGTWWSKHFRSACIAIGVIKAKKKVKENEDPNPRNLTPHSFRHTLNTLLLS 365 Query: 300 AGATAHELMATYGWKTVDQAETYTK 324 G + ++ AT GW + + YT Sbjct: 366 NGYDSGKIRATLGWTSEKIQDNYTH 390 >gi|239627043|ref|ZP_04670074.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239517189|gb|EEQ57055.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 298 Score = 95.9 bits (237), Expect = 9e-18, Method: Composition-based stats. Identities = 53/279 (18%), Positives = 97/279 (34%), Gaps = 24/279 (8%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134 I EY + + + + Y Q +GD K ++ + R TP + Sbjct: 14 IEEYGQWLESCERSRETVKKYRHYLKQFKEFTGDGPVTKEVVLLWKADLRER-LTPVTIN 72 Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP----WTKEDMQQFKSFWSEGS 190 + ++ FK+ + + C S + K P TK++ + Sbjct: 73 CVIAALNGFFKYC---GW---DGCES-KFLKISKSSFYPERKELTKDEYGRLVKTAFANG 125 Query: 191 QPRLAF--EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT 248 RLA E + SG+R S+ V+ ++ I+ G I TV L +L Sbjct: 126 NERLALVLETICVSGIRVSELSFITVEAIRRGQAEIEC--KGRIRTVLLTRQLCTILQSY 183 Query: 249 PIGKE----TFFINNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISADAG 301 K F+ + ++ + KA +AGV H +R A + Sbjct: 184 ASKKNISTGMIFVTKSGKALDRSNIWREMKALGMEAGVKNEKIFPHNLRHLFARTYYEIE 243 Query: 302 ATAHELMATYGWKTVDQAETYTKGA-DRIRLGIKNSRRI 339 +L G + ++ YTK + + RL ++ R + Sbjct: 244 KNLSKLADILGHRDINTTRIYTKESGSQHRLQLEKMRLL 282 >gi|118511775|emb|CAD20932.2| IntI1 integrase [Salmonella enterica subsp. enterica serovar Infantis] Length = 337 Score = 95.9 bits (237), Expect = 9e-18, Method: Composition-based stats. Identities = 42/306 (13%), Positives = 94/306 (30%), Gaps = 62/306 (20%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHT 129 ++ + R+ + ++ + ++ ++ IR G + + + + + RK + Sbjct: 16 VLDQLRERIRYLHYSLRTEQAYVNWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75 Query: 130 PSSAIQFLTSMRVLFK--WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 S+ Q L ++ + ++ + RP+ T +++ + F Sbjct: 76 VSTHRQALAALLFFYGKVLCTDLPWLQ-----EIGRPRPSRRLPVVLTPDEVVRILGFL- 129 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQKTGTIITVELPDGFMKLL 245 EG RL + L +G+R S+ + V+ + ++ K + LP+ L Sbjct: 130 EGEH-RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSL 188 Query: 246 AMTPIGKETFFINN---------------------------------------------D 260 +++ + Sbjct: 189 REQLSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVR 248 Query: 261 KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318 + M F FK +AG+ K + H +R AT +G + G V Sbjct: 249 RHHMYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVST 308 Query: 319 AETYTK 324 YT Sbjct: 309 TMIYTH 314 >gi|325293997|ref|YP_004279861.1| site-specific tyrosine recombinase XerC [Agrobacterium sp. H13-3] gi|325061850|gb|ADY65541.1| site-specific tyrosine recombinase XerC [Agrobacterium sp. H13-3] Length = 311 Score = 95.9 bits (237), Expect = 9e-18, Method: Composition-based stats. Identities = 44/275 (16%), Positives = 84/275 (30%), Gaps = 29/275 (10%) Query: 85 GSLAVNSRISFESYFD--------QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI-- 134 LA N+ ++E I + + D + +R+ + SR+ + A Sbjct: 27 RRLADNTVEAYERDTRQFLTFLTGYIGKPASIADIADLRPVDLRAFLASRRKEGAGARSL 86 Query: 135 -QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM-------QQFKSFW 186 + L +R + ++ V ++ PK+ +P T Q Sbjct: 87 GRHLAGLRSFLHYLQKKRLVNAAGATAMRSPKQPKSLPKPLTDRQALKITTTEAQLNEEP 146 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELPDGFMKLL 245 ++ L GLR S++ + S++ T K V L + + Sbjct: 147 WIAARNAAVLSLLYGCGLRISEALGLAPADFTPDARSLRITGKGNKTRMVPLLAVVTEAV 206 Query: 246 AMTP-------IGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATI 296 + F+ K+ + G+ N + H +R AT Sbjct: 207 EAYKKLCPYHLAADQPLFLGARGGKLQPAIIQREMQKLRGAFGLPENATPHALRHSFATH 266 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 G + G ++ + YT G D RL Sbjct: 267 LLAGGGDLRTIQELLGHASLSTTQIYT-GVDTARL 300 >gi|255012810|ref|ZP_05284936.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_7] Length = 406 Score = 95.9 bits (237), Expect = 9e-18, Method: Composition-based stats. Identities = 46/276 (16%), Positives = 99/276 (35%), Gaps = 28/276 (10%) Query: 90 NSRISFE---SYFDQIIRK---SGDFDYRKITTKHIRSGVESRKH----TPSSAIQFLTS 139 + +E Y ++ I+K D + I K +SAI L + Sbjct: 132 KTVQRYETTTRYLEEFIKKEYQLSDIALNNLEANFISKFDAFLKIEKGCAQNSAITRLKN 191 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQPRLAF 196 ++ + + A+ +++ +P + R K + T ++++ + Q R F Sbjct: 192 LKKIIRIALENDWIKKDP-FAYYRFKLEETDPEFLTMDEIKIILAKEFTIKRVEQVRDVF 250 Query: 197 EFLLYSGLRCSDSCRAGVQH-LQNN----IFSIKTQKTGTIITVELPDGFMKLLAMTPIG 251 F +++GL SD +H +++N QKT + + + +L Sbjct: 251 VFCIFTGLAFSDVKDLSPEHLVKDNKGELWIRKNRQKTKIMCNIPVLPVAASILDKY--- 307 Query: 252 KETFFINNDKQK-MNATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS-ADAGATAHEL 307 K+ + + + + K A G++K S H R AT G + + Sbjct: 308 KDVVECTGKLLPVLCNQRMNSYLKEIADVCGIHKNLSTHTARHSYATSICLANGVSMENV 367 Query: 308 MATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343 G + Y + D+ K+ ++++S + Sbjct: 368 AKMLGHADTSVTKHYARVLDQN--IFKDMQKVNSCL 401 >gi|71733392|ref|YP_273045.1| phage integrase family site specific recombinase [Pseudomonas syringae pv. phaseolicola 1448A] gi|71553945|gb|AAZ33156.1| site-specific recombinase, phage integrase family [Pseudomonas syringae pv. phaseolicola 1448A] Length = 318 Score = 95.9 bits (237), Expect = 9e-18, Method: Composition-based stats. Identities = 45/270 (16%), Positives = 91/270 (33%), Gaps = 30/270 (11%) Query: 89 VNSRISFESYFDQII---RKSGDFDYRKITTKHI---RSGVESRKHTPSSAIQFLTSMRV 142 +R ++++ + +G ++R + H+ R+ +E R + ++ + L ++ Sbjct: 38 PRTRRAYQADLREFCSFVDLAGAEEFRVVNRAHVLAWRAQLERRALSGATIRRKLATLAS 97 Query: 143 LFKWAVRQE-YVAINPCLSVERPKRKT-EGIRPW-----TKEDMQQFKSFWSEGSQPRLA 195 F + + N V RP +T EG P TK + +G + R Sbjct: 98 PFDYLLDNNALAGGNQVHGVARPPVETNEGKTPALGGDQTKRLLDAPDDESLQGVRDRAI 157 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ---KTGTIITVELPDGFMKLLAMTPIGK 252 LLY GLR + LQ + K G I + L + + + + Sbjct: 158 LAVLLYQGLRREELSLLQTGDLQERRGVKHLRIHGKGGKIRYLPLHPVAAERIYVYLVRD 217 Query: 253 E-------TFFINNDKQ----KMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISA 298 F + + + A+ A ++ HG+R +AT + Sbjct: 218 GDRAQTPGALFRSLRGKTSGTGITGKGVYGVVSKWASAAQIHVDGLGVHGLRATAATNAL 277 Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADR 328 + A ++ G + Y + R Sbjct: 278 EHDADIAKVQIWLGHANISTTRLYDRRGHR 307 >gi|302864521|ref|YP_003833158.1| integrase family protein [Micromonospora aurantiaca ATCC 27029] gi|302567380|gb|ADL43582.1| integrase family protein [Micromonospora aurantiaca ATCC 27029] Length = 383 Score = 95.9 bits (237), Expect = 9e-18, Method: Composition-based stats. Identities = 52/311 (16%), Positives = 102/311 (32%), Gaps = 38/311 (12%) Query: 66 KKPTTLKWLISEYRKSAHWGS-LAVNSRISFE-SYFDQIIRKSGDFDYRKITTKHIRSGV 123 +P T++ ++E+ + ++ + + ++ G ++T + ++ + Sbjct: 67 AQPRTVEAWLTEWLRDVKAHDGTRPSTLARYRLAVTKHLVPGLGRVKLDRLTPREVQRFL 126 Query: 124 --ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 K P+S I+ +RV A R + VA N + + P R T E+ +Q Sbjct: 127 TGLRGKLAPASIIKVHAVLRVALADAERMDLVARNVAKAAKPPALGRVERRALTPEEAKQ 186 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ---------------NNIFSIKT 226 S + G + F L +GLR ++ + + Sbjct: 187 LLSVLT-GDRLESLFVLALATGLRRAELLGLRWSDVDLPGKALFVRQTVQRTDRGLEFVP 245 Query: 227 QKTG-TIITVELPDGFMKLLAMTPIGK--------------ETFFINNDKQKMNATQFSI 271 KT + + L ++ L + + F + M + Sbjct: 246 PKTHRSSRPLPLSALAVRALEAQRVRQARERLAAGELWSDLGLVFASTIGTAMEPRNVNR 305 Query: 272 WFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQ-AETYTKGA-DR 328 F+ AG++ H +R AT D G +M G T+ A+TY R Sbjct: 306 RFEQLRAAAGLDWLHLHDLRHAFATFLLDQGEELRTVMELLGHSTIRMTADTYGHVLPAR 365 Query: 329 IRLGIKNSRRI 339 R R+ Sbjct: 366 ARQAASAIDRV 376 >gi|301162166|emb|CBW21711.1| putative bacteriophage integrase [Bacteroides fragilis 638R] Length = 371 Score = 95.9 bits (237), Expect = 9e-18, Method: Composition-based stats. Identities = 47/290 (16%), Positives = 96/290 (33%), Gaps = 35/290 (12%) Query: 76 SEYRKSAHWGSLAVNSRISFESYFDQIIRK--------SGDFDYRKITTK---HIRSGVE 124 Y+ A + R + + G + +I R + Sbjct: 87 DRYKLKADFLEY---YRKQLRKHDQKWEFVYLHFRNFVHGKCTFEEIDIDLCNKFREYLL 143 Query: 125 SRKH-------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177 S K T +SA + ++ R K R + N +++ + + + E Sbjct: 144 SAKKLRRNGPITRNSASGYWSTFRGFLKILYRNGMIKTNVNDFLDKIETEDVVKEYLSVE 203 Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL-----QNNIFSIKTQKTGTI 232 ++ + + + A F + LR SD + + I TQK Sbjct: 204 ELYKLAETPCKKPILKTASLFSCMTSLRISDILSLCWEDIVDYSAGGKCVHIITQKNKAE 263 Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290 + + + + L+ + K F + + + I K AG+ K + H R Sbjct: 264 DIIPISEEALGLIGYSSEKKGLVF-----KGLMRSWTQIPMKEWIRSAGITKNITFHSYR 318 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340 + AT+ A AG + + K++ + Y K D + + S++I+ Sbjct: 319 RTFATLQAAAGTDIRTIQSIMAHKSITTTQRYIKVVDANKR--EASKKIT 366 >gi|190893664|ref|YP_001980206.1| tyrosine site-specific integrase/recombinase protein [Rhizobium etli CIAT 652] gi|190698943|gb|ACE93028.1| tyrosine site-specific integrase/recombinase protein [Rhizobium etli CIAT 652] Length = 383 Score = 95.9 bits (237), Expect = 9e-18, Method: Composition-based stats. Identities = 49/274 (17%), Positives = 87/274 (31%), Gaps = 34/274 (12%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTK-----HIRSGVESRKHTPSSAIQFLTS 139 A N+ S+E D I R + + + PSS + L + Sbjct: 86 RGAAANTLQSYERDLDDIRSFLNGRSIRLTEAASADLSAYLASLARQGFKPSSQARRLAA 145 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-------SEGSQP 192 MR +K+ + +P ++ PK+ + E++ + S + G Sbjct: 146 MRQFYKFLYAEGIRTDDPTGVLDAPKKGRPLPKTMGVEEVSRLLSQAQAEADDPAPGQLQ 205 Query: 193 RLAFEFL----LYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLL-- 245 RL L +G+R S+ + L F + K V L +K L Sbjct: 206 RLRMLALLELLYATGMRVSELVSLPARVLDQEGRFLMIRGKGNKERLVPLSQSAIKALKS 265 Query: 246 ----------AMTPIGKETFFINNDKQK--MNATQFSIWFKAKATKAGVN---KSAHGVR 290 A + F + ++ + F+ K A +AG+ S H +R Sbjct: 266 YGRLLAAENAAAKEPQESPFLFSAASKEGYLPRQVFARDLKNLAIRAGLTPSLISPHVMR 325 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK 324 A+ GA + G + + YT Sbjct: 326 HAFASHLLANGADLRVVQELLGHSDISTTQIYTH 359 >gi|270296259|ref|ZP_06202459.1| conserved hypothetical protein [Bacteroides sp. D20] gi|270273663|gb|EFA19525.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 418 Score = 95.9 bits (237), Expect = 9e-18, Method: Composition-based stats. Identities = 36/226 (15%), Positives = 73/226 (32%), Gaps = 11/226 (4%) Query: 111 YRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170 +R+ + G + + ++A + + + K A Y+ I+ V+ + + Sbjct: 183 FRQFIMNAPQGGTKRGTISQNTAATYFSIFKAGLKQAFIDGYLTIDISAKVKGIQERESR 242 Query: 171 IRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ----NNIFSIKT 226 T E++ + + R A L +G+R D + ++ + Sbjct: 243 REYLTVEELNRLAQTPCDPLLKRAALFSAL-TGIRHCDIQKLKWSEVEMFNGGYRLNFTQ 301 Query: 227 QKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-- 284 QKT + + + + L G+ F K AG+ K Sbjct: 302 QKTKGVEYMPISEQAYNLCGEPKEGELLVFAGLPDPSWINRP----VKKWIEAAGITKHI 357 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 + H R AT+ G + + G V + Y K D + Sbjct: 358 TFHCFRHSYATLQLAGGTDIYTVSKMLGHTNVRTTQVYAKVVDEKK 403 >gi|326331572|ref|ZP_08197862.1| integrase [Nocardioidaceae bacterium Broad-1] gi|325950828|gb|EGD42878.1| integrase [Nocardioidaceae bacterium Broad-1] Length = 417 Score = 95.5 bits (236), Expect = 9e-18, Method: Composition-based stats. Identities = 63/395 (15%), Positives = 112/395 (28%), Gaps = 69/395 (17%) Query: 19 GKIIYYFRKGHGRRIRLPYPHESTFIPAYMSAL---------TGSTPKREYINSPRKKPT 69 G+I + GRR P E + TG TP + + + Sbjct: 21 GRIQARYTGPDGRRHPAPMTFEDSDAATAWLLRERRLLEEDPTGWTPPKARAAKKKSQAV 80 Query: 70 TLKWLISEYRKSAHWGS--LAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESR 126 T + + LA +R ++ D+ I+ + + IT + + ++ Sbjct: 81 TFGAFAERWLLTRKVKGRPLAGRTRDHYQDLLDRFILPTFEETVVKHITPEMVDDWYDAT 140 Query: 127 K-HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI--RPWTKEDMQQFK 183 TP+ +R + K AV + + NP V + T ++ Sbjct: 141 ALDTPTYRAHAYGLLRTILKTAVERNVIPANPAH-VRGAGSVSAAHDVETATLNEVATIV 199 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ---------------- 227 + + RL + R + + + I+ + Sbjct: 200 AMMPA--KQRLMILLGAWCSNRYGEIAELRRRDIDLKRMVIRVRREVVWVKDADGRYVAT 257 Query: 228 ----KTGT-IITVELPDGFMKLL------AMTPIGKETFFINNDKQKMNATQFSI----- 271 KT +P + + F N ++ + F Sbjct: 258 VKAPKTDAGSRDAPIPPHLVPDIKDHLKHHAADGLDGLLFPNAQGGQIRHSTFYGQAPVI 317 Query: 272 -------------WFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318 W+ A+ + H +R + T +A AGAT ELMA G T Sbjct: 318 DKKTKKIRRKGHGWYAARHAAGRPDLHFHDLRHTALTNAAIAGATIAELMALAGHSTPAA 377 Query: 319 AETYTKGA-DR-----IRLGIKNSRRISSVVDSDD 347 A Y A DR RL + + S Sbjct: 378 AMRYQHAARDRMQDLAKRLSEMAVGELGANEGSSR 412 >gi|315506755|ref|YP_004085642.1| tyrosine recombinase xerd [Micromonospora sp. L5] gi|315413374|gb|ADU11491.1| tyrosine recombinase XerD [Micromonospora sp. L5] Length = 323 Score = 95.5 bits (236), Expect = 9e-18, Method: Composition-based stats. Identities = 50/278 (17%), Positives = 87/278 (31%), Gaps = 39/278 (14%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTK-------HIRSGVESRKHTP----SSA 133 L+ N+ S+ D+ + + H+ P SSA Sbjct: 27 RGLSANTLASYRRDLDRYLATLAAAGVDDLAAAGPAQVEAHLARLRAGDDDHPPLAVSSA 86 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW------- 186 + +++R L ++A+R+ +P V P R + + + Sbjct: 87 ARAASAVRGLHRFALREGLAGADPSRDVRPPAPPRRLPRALPVDAVLRLLEAAGTPGASG 146 Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVEL----P 238 + + R EFL +G R S++ A V L + ++ K G V + Sbjct: 147 DAAARALRDRALLEFLYGTGARISEAVGAAVDDLDLDAGTVLLRGKGGRTRLVPVGGYAA 206 Query: 239 DGFMKLL-------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK------S 285 D L G F+N + + A +AG+ S Sbjct: 207 DALRAWLVRGRPALLAAGRGTHAVFVNARGGPLTRQGAWAVLRTAAARAGLPVDGPDAVS 266 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 H +R AT D GA + G +V + YT Sbjct: 267 PHTLRHSYATHLLDGGADVRVVQELLGHASVTTTQVYT 304 >gi|307610879|emb|CBX00496.1| prophage dlp12 integrase [Legionella pneumophila 130b] Length = 324 Score = 95.5 bits (236), Expect = 9e-18, Method: Composition-based stats. Identities = 41/246 (16%), Positives = 81/246 (32%), Gaps = 11/246 (4%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLF 144 ++ + ++ D +R D + + I E+ + ++ + L +R + Sbjct: 71 HKRSLETDKYHLAWLDSFLRAKKLSDIDRDLIEFIAKKKEAEHVSLTTVNRVLELVRAIL 130 Query: 145 KWA-VRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSG 203 A ++ P + K + + IR TKE+ + +F +G Sbjct: 131 NRAHKEWGWLDKTPI--IRMRKIENKRIRWLTKEEANLLLKELPPHLEAMASFTLA--TG 186 Query: 204 LRCSDSCRAGVQHLQNN----IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINN 259 LR S+ + + + + K+ I V L + +L T+ Sbjct: 187 LRESNVTQLKWSEINLDKKHALIHADESKSKRPIPVPLNKQAISILKAQQGRNSTYVFTY 246 Query: 260 DKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318 + + W K +AG+N H +R A+ G HEL GW + Sbjct: 247 NGNPVTRCNNHAWQK-ALIRAGINDFRWHDLRHTWASWHVQNGTPLHELQQLGGWSNYEM 305 Query: 319 AETYTK 324 Y Sbjct: 306 VLRYAH 311 >gi|218688736|ref|YP_002396948.1| Integrase [Escherichia coli ED1a] gi|218426300|emb|CAR07125.1| Integrase [Escherichia coli ED1a] Length = 335 Score = 95.5 bits (236), Expect = 9e-18, Method: Composition-based stats. Identities = 42/239 (17%), Positives = 81/239 (33%), Gaps = 22/239 (9%) Query: 94 SFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFLTSMRVLFKWAVRQ 150 ++ ++I R+ D ++T K + + PSS + L ++ +F + Sbjct: 86 TYRVRLEKINREMRDPCASEMTRKFMLGYRSDKLQAGLMPSSVNRDLCALSAMFTSLIDA 145 Query: 151 E-YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDS 209 E + NP + + K + + + +++ + EG R+A L +G R ++ Sbjct: 146 EVFHNENPVRGIRKLKVRNTEMAFLSDDEIDRLLERL-EGDARRVAV-LCLSTGARWGEA 203 Query: 210 CRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF 269 +H+ N K G V + D + I K + Sbjct: 204 AGLRGEHIVGNRVMFFNTKNGKSRAVPVSDTVLS------------LIKTRKTGLLYQAD 251 Query: 270 SIWFKAKATKAGVNK----SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 I F+ + + + H +R AT G L G T+ Q TY Sbjct: 252 YIRFRDILQEVKPDLPKGQATHVMRHTFATHFMMNGGNIVTLQRILGHTTIQQTMTYAH 310 >gi|89108420|ref|AP_002200.1| predicted defective integrase [Escherichia coli str. K-12 substr. W3110] gi|85675030|dbj|BAE76475.1| predicted defective integrase [Escherichia coli str. K12 substr. W3110] gi|260449299|gb|ACX39721.1| integrase family protein [Escherichia coli DH1] gi|315136218|dbj|BAJ43377.1| predicted defective integrase [Escherichia coli DH1] Length = 398 Score = 95.5 bits (236), Expect = 9e-18, Method: Composition-based stats. Identities = 45/317 (14%), Positives = 97/317 (30%), Gaps = 64/317 (20%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK-ITTKHIRSGVESR-- 126 T+K L ++ +A S ++ + I+ G+ + I + + + Sbjct: 52 TIKELAEKFLALKE-TEVAKTSLNTYRAVIKNILSIIGEKNLASSINKEKLLEVRKELLT 110 Query: 127 --------------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172 + + ++T++ +F++ V Y+A NP + K Sbjct: 111 GYQIPKSNYIVTQPGRSAVTVNNYMTNLNAVFQFGVDNGYLADNPFKGISPLKESRTIPD 170 Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIK----- 225 P ++E+ + Q + + +Y+G+R + C G + + N I+ Sbjct: 171 PLSREEFIRLIDAC-RNQQAKNLWCVSVYTGVRPGELCALGWEDIDLKNGTMMIRRNLAK 229 Query: 226 --------TQKTGTIITV--ELPDGFMKLLAMTPIGKETFF------------------- 256 T +I + D + +T + KE Sbjct: 230 DRFTVPKTQAGTNRVIHLIKPAIDALRSQMTLTRLSKEHIIDVHLREYGRTEKQKCTFVF 289 Query: 257 -------INNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELM 308 + N + A +AG+ ++ ++ R A S AGA + Sbjct: 290 QPEVSARVKNYGDHFTVDSIRQMWDAAIKRAGLRHRKSYQSRHTYACWSLTAGANPAFIA 349 Query: 309 ATYGWKTVDQA-ETYTK 324 G + Y K Sbjct: 350 NQMGHADAQMVFQVYGK 366 >gi|325579064|ref|ZP_08149020.1| xylulose-5-phosphate/fructose-6-phosphate phosphoketolase [Haemophilus parainfluenzae ATCC 33392] gi|325159299|gb|EGC71433.1| xylulose-5-phosphate/fructose-6-phosphate phosphoketolase [Haemophilus parainfluenzae ATCC 33392] Length = 399 Score = 95.5 bits (236), Expect = 9e-18, Method: Composition-based stats. Identities = 63/346 (18%), Positives = 126/346 (36%), Gaps = 28/346 (8%) Query: 17 RHGKIIYYFR-----KGHGRRIRLPYP-HESTFIPAYMSALTGSTPKREYINSPRKKPTT 70 R GK Y GRRIR + L + K E +N ++ T Sbjct: 39 RSGKNKYGVWQIDFTTPSGRRIRSSSGRTDKRLAQELHDKLKAESYKVERLN--KQPERT 96 Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT- 129 ++ + + + A + + + G + +T+ I + + + K T Sbjct: 97 VEDALICFLEDAE----HQKDLETKIHHAQYWRDRIGHKNLSSLTSDDIYNNLPTHKRTG 152 Query: 130 ----PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW-TKEDMQQFKS 184 PS+ ++ TS+ A + +V P L+ + + W T+++ +F Sbjct: 153 ERLSPSTQNRYRTSIMRALNLAKQAGWVDAIPYLA---KNNEPKKRVRWITQDEANRFLD 209 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ----NNIFSIKTQKTGTIITVELPDG 240 + R F L +G R S+ + I + K+G ++ LP Sbjct: 210 SLNL-EWMREVCSFALLTGGRMSEILTLTWDKIDFPRSIAIVTSDVAKSGHARSLPLPRN 268 Query: 241 FMKLLAMTPIGKETFFINNDKQ-KMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISA 298 + L + + ++ + + KM + FK +AG+ + S H +R A+ Sbjct: 269 AVNFLRQKETRRISQYVFHRGKGKMISDIDREDFKRALQRAGISDFSFHDLRHTWASWHI 328 Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344 +G L GW+T++ + Y +R L N +++S + Sbjct: 329 QSGTPLMVLKELGGWETIEMVQKYAHLNERHLLQYANHVKVTSKLT 374 >gi|51597440|ref|YP_071631.1| phage integrase/recombinase [Yersinia pseudotuberculosis IP 32953] gi|51590722|emb|CAH22367.1| Possible phage integrase/recombinase [Yersinia pseudotuberculosis IP 32953] Length = 327 Score = 95.5 bits (236), Expect = 9e-18, Method: Composition-based stats. Identities = 48/307 (15%), Positives = 96/307 (31%), Gaps = 24/307 (7%) Query: 26 RKGHGRRIRLPYPHESTFIP-AYMSALTGSTPKREYINSP--RKKPTTLKWLISEYRKSA 82 R R+ A+ + + ++E+++ P ++ + L L Y Sbjct: 16 RPAGRNGKRIRRTFSKKHEAVAFEKYVVVNYHEKEWLSKPTDKRSLSELSTLWWSY--HG 73 Query: 83 HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRV 142 ++ +I+ F K R+ + SS + L + Sbjct: 74 QNMDYGQKYKVQLAKVI-RIMSDLCAFQIDKNVIARYRAIRLAGGVKASSVNRDLAVLSG 132 Query: 143 LFKWAVRQE-YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY 201 +F + Y + +P + + K K ++ ++++ + G R+A L Sbjct: 133 MFTALINAGVYHSEHPLAGISKLKPKQTARAFLSQSEIKKLLNCLD-GDNRRVAI-LCLS 190 Query: 202 SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIG----KETFFI 257 +G R ++ + +H+ +N + K G TV + L G + I Sbjct: 191 TGARWGEAIKLRTEHIIDNRITFVATKNGKQRTVPISSDVFNDLTAMKSGLLFNDAAYLI 250 Query: 258 NNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVD 317 K K T ++ H +R AT G L G T+ Sbjct: 251 FRQKLKSVKTDLPQ-----------GQATHVLRHTFATHFMINGGNIITLQRILGHSTIQ 299 Query: 318 QAETYTK 324 Q Y Sbjct: 300 QTMLYAH 306 >gi|288801874|ref|ZP_06407316.1| integrase [Prevotella melaninogenica D18] gi|288335916|gb|EFC74349.1| integrase [Prevotella melaninogenica D18] Length = 328 Score = 95.5 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 51/291 (17%), Positives = 110/291 (37%), Gaps = 30/291 (10%) Query: 75 ISEYRKSAHWGSLAVNS----RISFES--YFDQIIRKSGDFDYRKITTKHIRS----GVE 124 + EY++ +L+ + + S++S +F Q+ ++ D ++ + + Sbjct: 17 VCEYKEELQGRTLSKATVRAFKDSYKSFVHFLQVRDRA-DCMPTEVDKTLLEDYRLFMLR 75 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 + SS L + + + A+++ YV +P ++ + T T +D+Q+ + Sbjct: 76 DLGNKESSVGNRLRHLHQVIRKALQERYVREDPFELID-IETPTYERNALTADDLQKLLA 134 Query: 185 FWSEGSQP---RLAFEFLLYSGLRCSDSCRAGVQHL-----QNNIFSIKTQKTGTIITVE 236 + S RL F ++GL SD + + + S+ KT V Sbjct: 135 YRPHRSTDNHCRLIFLLGCFTGLAFSDLKKLRMDDVYTFGDGRRYISLCRTKTQNRSIVP 194 Query: 237 LPDGFMKLLAMTPIG-KETFFINNDKQKMNATQFSIWFKAKATKAGV----NKSAHGVRK 291 L K+LA+ G +E F + + F+ + KAG+ ++H R Sbjct: 195 LLPVAEKILAIVSHGRREGLFFREF---PSNSNFNRTIQEICIKAGLLPHTQATSHTARH 251 Query: 292 FSATIS-ADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341 AT + G + G + + E Y + + ++ + + S Sbjct: 252 TFATTICLENGLPIETVSKMLGHRFISTTEIYAR-VTKSKIAKEMQPLMGS 301 >gi|163745902|ref|ZP_02153261.1| Phage integrase [Oceanibulbus indolifex HEL-45] gi|161380647|gb|EDQ05057.1| Phage integrase [Oceanibulbus indolifex HEL-45] Length = 497 Score = 95.5 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 46/272 (16%), Positives = 94/272 (34%), Gaps = 28/272 (10%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS--AIQFLTSMRV 142 GSL + + Q + GD + H + E+ ++ ++ +RV Sbjct: 211 GSLKRKTAKQRIRHLKQFVEMIGDHALEDLEPIHAYAYAEALAEELANKTINARISDVRV 270 Query: 143 LFKWAVRQEYVAINPCLSV--ERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL 200 AV++ + +NP L++ + T+ P + E ++ + R + L Sbjct: 271 ALHLAVKKGLLKVNPFLNLSLKHYGTGTKNYDPLSDEQIEALVGQPKLPDRIRTIWLILA 330 Query: 201 YSGLRCSDSCRAGVQHLQ--NNIFSI-----KTQKTGTIITVELPDGFMKLLAMT---PI 250 +G+R + ++ + I+ + + ++ V + D L+ Sbjct: 331 CTGMRVDEVATLRCDQVKHLDGIWYFDLRHAQVKNKSSMRRVPICDALFPLVHQLLKDRK 390 Query: 251 GKETFF---INNDKQKMNATQFSIWFKAKATKAGVNKS--------AHGVRKFSATISAD 299 G+E F +N D + +TQ + WFK + N S H +R D Sbjct: 391 GQERLFDYELNADGKTRASTQMNYWFKKAGVE---NLSEISNGHFVTHSLRGTFKDKLRD 447 Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRL 331 A + +G + Y G +L Sbjct: 448 ADVLTEINKSIHGHGLGGMEDIYGHGFSLRKL 479 >gi|262381530|ref|ZP_06074668.1| transposase [Bacteroides sp. 2_1_33B] gi|262296707|gb|EEY84637.1| transposase [Bacteroides sp. 2_1_33B] Length = 403 Score = 95.5 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 54/287 (18%), Positives = 98/287 (34%), Gaps = 37/287 (12%) Query: 88 AVNSRISFESY-------FDQIIRKS--GDFDYRKITTKHIRSG----VESRKHTPSSAI 134 ++ ++ Y + I K D +R+I I E+ T ++A+ Sbjct: 126 KTATQKTYTRYELTKNRLAEYIHDKYNVEDITFREINVVFIEGFYLFIRENYPCTHNTAM 185 Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQ 191 +F+ R + +A + NP + K + + ++ + Q Sbjct: 186 KFIQRFRTVVLFAHNLGLITFNP-FGAYKLKFEYVERDFLEQAELDRIYQKTFASKRLEQ 244 Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQ-----NNIFSIKTQKTGTIITVELPDG----FM 242 R F F Y+GL D C ++++ N K KT + L D Sbjct: 245 VRDIFIFSCYTGLSYVDVCELTPENIKLSFDGNLWIIKKRHKTSVTSNIRLLDIPKSILQ 304 Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300 K P GK I+N K + + K AT G+NK + H R AT+S Sbjct: 305 KYDGKLPNGKLLPVISNQK-------MNDYLKEIATVCGINKRITFHVARHSFATLSISY 357 Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347 G + G + + Y K D ++ ++ +++ Sbjct: 358 GVPIESVSKMLGHTNIRTTQIYAKIIDTKL--SEDMDIFANKLNNRK 402 >gi|47097559|ref|ZP_00235093.1| site-specific recombinase, phage integrase family, putative [Listeria monocytogenes str. 1/2a F6854] gi|254900896|ref|ZP_05260820.1| DNA integration/recombination/invertion protein [Listeria monocytogenes J0161] gi|47014070|gb|EAL05069.1| site-specific recombinase, phage integrase family, putative [Listeria monocytogenes str. 1/2a F6854] Length = 387 Score = 95.5 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 42/296 (14%), Positives = 84/296 (28%), Gaps = 47/296 (15%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVE---SR 126 + ++R + L N+ + + + II KITT + + Sbjct: 65 FIDFVEKWRLNYAKRELKGNTIDKYNLFLENWIIPYFERKKISKITTMQLLDYFHEVQKK 124 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 PS+ +R LFK+A + LSV++P K + + +++ Sbjct: 125 GVGPSALEGHHRVIRSLFKYATLWGITETDVSLSVKKPTYKVPEKNIYNRREIEVLIDRI 184 Query: 187 SEGSQ-PRLAFEFLLYSGLRCSDSCRAGVQHLQ----------------NNIFSIKTQKT 229 + ++ + LY GLR + + + + + K Sbjct: 185 KILQKYQQVMIKLALYCGLRRGEVIGLTTKDMNYNKNTINVYRAVIKSASEGIKLDETKN 244 Query: 230 GTIITVELPDGFMKLLAMTPIGKE----------------------TFFINNDKQKMNAT 267 V P G M+ + K+ F ++D Sbjct: 245 KRKRIVPAPAGLMQEIKELAKEKQKNKDKLGLLWKGTKDLDGKTVVLIFSHDDGTPFTPA 304 Query: 268 QFSIWFKAKATKAG----VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319 + F K S H +R +A+ + G + G + Sbjct: 305 SVTRMFNRFLEKEENNDLTKISFHDLRHSAASFLLEQGINVKVIQNILGHSDIKVT 360 >gi|302189251|ref|ZP_07265924.1| phage integrase, putative [Pseudomonas syringae pv. syringae 642] Length = 335 Score = 95.5 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 33/284 (11%), Positives = 88/284 (30%), Gaps = 29/284 (10%) Query: 11 VTKERTRHGKIIY---YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKK 67 V ++R R ++ Y+R +G+ + L + + + L + Sbjct: 2 VRRKRPRKNGTVWVGYYYRDANGKELPLGGDLDKARLK--WAELEAKAKPDDLKI----- 54 Query: 68 PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK 127 +K + Y + A ++ ++ + + IT + ++R Sbjct: 55 ---MKGIFDRYERDII-PKKAARTQKDNKAELKHLRKGFESAPIDAITPSMVAQYRDART 110 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAI-NPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + A + + + ++ A + NPC V + K K Sbjct: 111 AK-TRANREIALLSHVYNMAREWGFTDRENPCAGVRKNKEKVRDYYA-NDMVWAAVYGQA 168 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL-----PDGF 241 + + A + +G R +D ++ + +++ KTG + +++ P+ Sbjct: 169 PQELKD--AMDLAYLTGQRPADVIAMNRGDIEGDYLNVQQGKTGKRLRIQMQNSGVPNSL 226 Query: 242 -----MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA 280 +L F ++ +++ + A Sbjct: 227 GLLIGAIMLRNAKHASHHFILSRTGMRVSQQMLRNRWDEAREAA 270 >gi|218554145|ref|YP_002387058.1| putative defective integrase; Qin prophage [Escherichia coli IAI1] gi|218360913|emb|CAQ98485.1| putative defective integrase; Qin prophage [Escherichia coli IAI1] Length = 431 Score = 95.5 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 45/317 (14%), Positives = 97/317 (30%), Gaps = 64/317 (20%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK-ITTKHIRSGVESR-- 126 T+K L ++ +A S ++ + I+ G+ + I + + + Sbjct: 85 TIKELAEKFLALKE-TEVAKTSLNTYRAVIKNILSIIGEKNLASSINKEKLLEVRKELLT 143 Query: 127 --------------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172 + + ++T++ +F++ V Y+A NP + K Sbjct: 144 GYQIPKSNYIVTQPGRSAVTVNNYMTNLNAVFQFGVDNGYLADNPFKGISPLKESRTIPE 203 Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIK----- 225 P ++E+ + Q + + +Y+G+R + C G + + N I+ Sbjct: 204 PLSREEFIRLIDAC-RNQQAKNLWCVSVYTGVRPGELCALGWEDIDLKNGTMMIRRNLAK 262 Query: 226 --------TQKTGTIITV--ELPDGFMKLLAMTPIGKETFF------------------- 256 T +I + D + +T + KE Sbjct: 263 DRFTVPKTQAGTNRVIHLIKPAIDALRSQMTLTRLSKEHIIDVHLREYGRTEKQKCTFVF 322 Query: 257 -------INNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELM 308 + N + A +AG+ ++ ++ R A S AGA + Sbjct: 323 QPEVSARVKNYGDHFTVDSIRQMWDAAIKRAGLRHRKSYQSRHTYACWSLTAGANPAFIA 382 Query: 309 ATYGWKTVDQA-ETYTK 324 G + Y K Sbjct: 383 NQMGHADAQMVFQVYGK 399 >gi|42525368|gb|AAS18383.1| Int1 DNA integrase [Salmonella enterica subsp. enterica serovar Typhimurium] Length = 372 Score = 95.5 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 42/306 (13%), Positives = 93/306 (30%), Gaps = 62/306 (20%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHT 129 ++ + R+ + ++ + ++ + IR G + + + + + RK + Sbjct: 16 VLDQLRERIRYLHYSLRTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75 Query: 130 PSSAIQFLTSMRVLFK--WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 S+ Q L ++ + ++ + RP+ T +++ + F Sbjct: 76 VSTHRQALAALLFFYGKVLCTDLPWLQ-----EIGRPRPSRRLPVVLTPDEVVRILGFL- 129 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQKTGTIITVELPDGFMKLL 245 EG RL + L +G+R S+ + V+ + ++ K + LP+ L Sbjct: 130 EGEH-RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSL 188 Query: 246 AMTPIGKETFFINN---------------------------------------------D 260 +++ + Sbjct: 189 REQLSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVR 248 Query: 261 KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318 + M F FK +AG+ K + H +R AT +G + G V Sbjct: 249 RHHMYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVST 308 Query: 319 AETYTK 324 YT Sbjct: 309 TMIYTH 314 >gi|225572883|ref|ZP_03781638.1| hypothetical protein RUMHYD_01074 [Blautia hydrogenotrophica DSM 10507] gi|225039748|gb|EEG49994.1| hypothetical protein RUMHYD_01074 [Blautia hydrogenotrophica DSM 10507] Length = 397 Score = 95.5 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 62/378 (16%), Positives = 107/378 (28%), Gaps = 61/378 (16%) Query: 9 PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68 ++ K G Y + P P P+ E K Sbjct: 24 KYLYKYVDAFGNTKYVYAWRLTP--TDPTPKGKREKPSLRELEQQIRRDIEDGIDSTGKK 81 Query: 69 TTLKWLISEY-RKSAHWGSLAVNSRISFESYFDQI-IRKSGDFDYRKITTKHIRSGVESR 126 T L Y +++A ++ +++ E + K G I + Sbjct: 82 MT---LCQLYAKQNAQRANVKKSTQKQREQLMRLLKEDKLGARSIDTIKPSDAKEWALRM 138 Query: 127 KHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPC--LSVERPKRKTEGIRPWTKEDMQQ 181 K ++ S++ F A++ +YV NP E + T+ T+E Q Sbjct: 139 KDKGFSYNTINNHKRSLKASFYIAIQDDYVRKNPFDFKLSEVLENDTKEKVALTEEQEQA 198 Query: 182 FKSFWSEGSQPRLAFE---FLLYSGLRCSDSCRAGVQHLQ------------------NN 220 SF + F+ LL +GLR S+ C + + Sbjct: 199 LLSFIKTDNVYHKYFDDVLILLKTGLRISELCGLTIMDVDFNHEVVIIDHQLLKSKEQGY 258 Query: 221 IFSIKTQKTGTIITVELPDG----FMKLLAMTPIG--------KETFFINNDKQKMNATQ 268 K+GT V L + F +L+ P F+N + A Sbjct: 259 YIETPKTKSGTR-QVPLSEETIKAFQRLMKKRPKAEPFVIDGRGNFLFVNQKGKPKVAID 317 Query: 269 FSIWFKAKATKAGVNK--------SAHGVRKFSATISADAGATAHELMATYGWKTVD--- 317 ++ F K + + H +R T A +L G + Sbjct: 318 YNALFVRMVKKYNKHHKDNPLPHITPHTLRHTFCTRLASKNMNPKDLQYIMGHSNISITM 377 Query: 318 ----QAETYTKGADRIRL 331 A T ++ RL Sbjct: 378 NWYAHASIDTAKSEVQRL 395 >gi|311107246|ref|YP_003980099.1| integrase [Achromobacter xylosoxidans A8] gi|310761935|gb|ADP17384.1| phage integrase family protein 5 [Achromobacter xylosoxidans A8] Length = 248 Score = 95.5 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 43/228 (18%), Positives = 84/228 (36%), Gaps = 19/228 (8%) Query: 108 DFDYRKITTKHIRSGVESRKHT--PSSAIQFLTSMRVLFKWA-VRQEYVAINPCLSVERP 164 D K+T +HI + + R T PSS ++ L+ + +F+ A + E+V +NP + +P Sbjct: 14 DLAMSKVTAQHIGAFRDDRAKTIGPSSVLRELSLLASVFESARLEWEWVELNPVRGIRKP 73 Query: 165 KRKTEGIRPWTKEDMQQ------FKSFWSEGSQPRL---AFEFLLYSGLRCSDSCRAGVQ 215 + R + ++++ ++ GS L +G+R + C Sbjct: 74 AKGKHRDRIISMPEVRRMLREMGYQRSGRIGSTAEAVANCMMLALRTGMRAGELCGLTWA 133 Query: 216 HLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKA 275 ++ + + K+ V L +L ET F+ Sbjct: 134 NVHDLHAHLPDTKSDRPRDVPLSTRARAILRRMKGWDETLVFGIR-----PASLDALFRK 188 Query: 276 KATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 +A ++ + H R +AT+ A +L +GW A Y Sbjct: 189 YRERAELSGFTFHDTRHTAATMIAKK-IDVLDLCKMFGWTDPKMAMVY 235 >gi|302866903|ref|YP_003835540.1| tyrosine recombinase XerD [Micromonospora aurantiaca ATCC 27029] gi|302569762|gb|ADL45964.1| tyrosine recombinase XerD [Micromonospora aurantiaca ATCC 27029] Length = 323 Score = 95.5 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 50/278 (17%), Positives = 87/278 (31%), Gaps = 39/278 (14%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTK-------HIRSGVESRKHTP----SSA 133 L+ N+ S+ D+ + + H+ P SSA Sbjct: 27 RGLSANTLASYRRDLDRYLATLAAAGVDDLAAAGPAQVEAHLARLRAGDDDHPPLAVSSA 86 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW------- 186 + +++R L ++A+R+ +P V P R + + + Sbjct: 87 ARAASAVRGLHRFALREGLAGADPSRDVRPPAPPRRLPRALPVDAVLRLLEAAGTPGATG 146 Query: 187 ---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVEL----P 238 + + R EFL +G R S++ A V L + ++ K G V + Sbjct: 147 DAAARALRDRALLEFLYGTGARISEAVGAAVDDLDLDAGTVLLRGKGGRTRLVPVGGYAA 206 Query: 239 DGFMKLL-------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK------S 285 D L G F+N + + A +AG+ S Sbjct: 207 DALRAWLVRGRPALLAAGRGTHAVFVNARGGPLTRQGAWAVLRTAAARAGLPVDGPDAVS 266 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 H +R AT D GA + G +V + YT Sbjct: 267 PHTLRHSYATHLLDGGADVRVVQELLGHASVTTTQVYT 304 >gi|168703458|ref|ZP_02735735.1| Phage integrase [Gemmata obscuriglobus UQM 2246] Length = 363 Score = 95.5 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 52/293 (17%), Positives = 90/293 (30%), Gaps = 22/293 (7%) Query: 52 TGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFD 110 G K E + P TLK + + KS L ++ ++ D + G Sbjct: 52 AGLVKKLEEVAPPSSG-ITLKAWLERWLKSLEGTELRQRTKDVRKTATDLYFVPTLGHIR 110 Query: 111 YRKITTKHIRSGVESRKHTPSSAIQF---LTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167 +T I V+ T SA L ++ A + + NP L V+RP + Sbjct: 111 LTDLTHLQITEAVKKWTATLKSASTRRTYLAALSTALNAAKYEGLITDNPILKVKRPPQP 170 Query: 168 TEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIK 225 P+T D+ + + + +G R ++ V +I Sbjct: 171 KAVFDPFTVADLNRIIADAVQRPATYPC-ALYAATGCRMGEALALDVTSFDPAAGTIAIT 229 Query: 226 T----------QKTGTIIT-VELPDGFMKLL--AMTPIGKETFFINNDKQKMNATQFSIW 272 KT I +E+P L A+ F ++ + + Sbjct: 230 QTQDARRERGPAKTSNSIRVIEVPADARPALVSAIGTRTDGPLFTTPAGRRQSKSNVRKA 289 Query: 273 FKAKATKAGVNKSA-HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 + + G+ A H R AT AG ++ A G Y + Sbjct: 290 WIRLLNRLGLKYRAPHKCRHTVATRMLAAGYGIPDVAAYLGDTAETVLRIYAR 342 >gi|145708124|ref|YP_001165299.1| site-specific recombinase [Ralstonia phage phiRSA1] gi|139003913|dbj|BAF52427.1| site-specific recombinase [Ralstonia phage phiRSA1] Length = 360 Score = 95.5 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 50/335 (14%), Positives = 105/335 (31%), Gaps = 31/335 (9%) Query: 16 TRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR---KKPTTLK 72 R +Y+ K + R P + + K + N + + T Sbjct: 5 KRKDSNNWYY-KLYAPGNRTPVQGSTGTSDRERAQEYHDRLKVDLWNQAKLGHQPRYTWN 63 Query: 73 WLISEYRKSAHWGSLAVNSR---ISFESYFDQIIRKSGDFDYRKITTK---------HIR 120 + Y + +R + + D ++ D D + R Sbjct: 64 DAVVRYVEDRAELRSLETTRTHLRWLDKHLDGVVLADIDRDRVDALARLKRAEHRIVRTR 123 Query: 121 SGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 G++ T PS+ + + + + AV ++ P +R K + IR + + Sbjct: 124 EGIKQLPGTVSPSTVRRVIGVLTAVLNAAVEWGWLTSAPKR--KRVKTAGKRIRWLSPAE 181 Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN----NIFSIKTQKTGTIIT 234 ++ + + F L +GLR ++ + K IT Sbjct: 182 AERLLAELPDHLAEMARF--SLETGLRRANVTGLQWSQVDLVRRVAWIHADQAKAHKAIT 239 Query: 235 VELPDGFMKLLA---MTPIGKETF-FINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGV 289 V L D +++L P + ++ + + +K +AG+ + H + Sbjct: 240 VPLSDTAVEVLRRQLAKPRKPQYVSWVFVYRGCSIYKTTTAAWKKAQKRAGIRDFRWHDL 299 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 R A+ G L GW+T++ + Y Sbjct: 300 RHTWASWHVQRGTPLQVLKELGGWETMEMVQRYAH 334 >gi|258538870|ref|YP_003173369.1| phage-related integrase [Lactobacillus rhamnosus Lc 705] gi|257150546|emb|CAR89518.1| Phage-related integrase [Lactobacillus rhamnosus Lc 705] Length = 383 Score = 95.5 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 63/341 (18%), Positives = 117/341 (34%), Gaps = 49/341 (14%) Query: 28 GHGRRIRLPYPHESTFIPAYMSALTGS--TPKREYINSPRKKPTTLKWLISEYRKSAHWG 85 G RRI F +AL S T + + + T K + E+ + Sbjct: 29 GKKRRIHKRG-----FRDKKEAALAASRFTLDADAGSLSTNRSMTFKAVYLEWDAAYKNT 83 Query: 86 SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR-KHTPSSAIQFLTSMRVLF 144 ++ ++ G+ KITT ++ V K + ++LT+ + Sbjct: 84 VRESTYERTYIQIKKHVLPLFGNKPINKITTAQLQQAVNQWSKQVTRNYRRWLTTASRIL 143 Query: 145 KWAVRQEYVAINPCLSVERPKRKTE----GIRPWTKEDMQQFKSFWSEGSQPR--LAFEF 198 ++A+R+ Y+ NP V PK K + W K+++ +F S+ +P+ F Sbjct: 144 RFALRRGYINKNPADLVIIPKEKEQIGDVAANFWDKQELTRFFSYIDAKQEPQKTALFRI 203 Query: 199 LLYSGLRCSDSCRAGVQHL----------------QNNIFSIKTQKT-GTIITVEL---- 237 L + GLR + + + N ++ KT + T+ + Sbjct: 204 LAFGGLRRGECLALTWKDISFTDSTITVNKTLSQGMNGRQLVQPPKTRKSRRTITMDSKT 263 Query: 238 --------PDGFMKLLAMTPIG---KETFFINNDKQKMNATQFSIWFKAKATKAGVNK-- 284 K +A+ + F N+ + + + + W K+ + Sbjct: 264 MSALKHWRLVQLQKYMALGFNANKPDQLVFSNSKNKHLLLHKPADWLKSIEDTHKIEHRI 323 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324 + HG R A+ AGAT E+ G V YT Sbjct: 324 TIHGFRHSHASALFSAGATVKEVQERLGHSDVKTTLNIYTH 364 >gi|157362896|ref|YP_001469663.1| phage integrase family protein [Thermotoga lettingae TMO] gi|157313500|gb|ABV32599.1| phage integrase family protein [Thermotoga lettingae TMO] Length = 276 Score = 95.5 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 38/262 (14%), Positives = 87/262 (33%), Gaps = 16/262 (6%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132 L+ + L+ + ++ S + + + + +I + + PS+ Sbjct: 6 DLLKRFEAVLRSQKLSSMTVRAYMSAVRKFTQSIEELNVEEILKW---AETTAEGRKPST 62 Query: 133 AIQFLTSMRVLFKWAVRQEYVA-INPCLSVERPKRKTEGIRPWTKED----MQQFKSFWS 187 + ++R + + + N ++ R + + ++ + + + Sbjct: 63 VNLYYCAIRRFLEEVSPEILLDLRN---KLKVKGRSSTIPKALSEREFLKLWNKAVKIFD 119 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-ELPDGFMKLL- 245 E + L Y+GLR S+ V H+ I G + + +P + Sbjct: 120 EDYRQLLIVGLAGYAGLRVSEIRSLKVGHINLREDHILVNGKGRKMRIVPIPSKLKPYIF 179 Query: 246 AMTPI--GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGA 302 + P +E N + + + S K A K G+ S H +R +AT G Sbjct: 180 KIVPKLKEEEPLLKNLSGKPITSHGISYLLKNLAKKTGIKHISPHVLRHTAATNLLKKGV 239 Query: 303 TAHELMATYGWKTVDQAETYTK 324 + G ++ E Y + Sbjct: 240 NLKIVQEFLGHSSLATTERYLR 261 >gi|78776442|ref|YP_392757.1| Phage integrase [Sulfurimonas denitrificans DSM 1251] gi|78496982|gb|ABB43522.1| Phage integrase [Sulfurimonas denitrificans DSM 1251] Length = 377 Score = 95.5 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 66/369 (17%), Positives = 123/369 (33%), Gaps = 46/369 (12%) Query: 10 FVTKERTRHGKIIYYFRKGHG----RRIRLPYPHESTFIPAY--------MSALTGSTPK 57 V G YY R +R+++ + T Y ++A Sbjct: 12 GVQYYIKADGTKSYYVRYKDEENRLKRVKIGDETDGT-TEVYCKNKRIEILNAQNKGEQP 70 Query: 58 REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK 117 + + + RKK TL + +Y + + ++ Y I G IT Sbjct: 71 PKIVKNHRKKVLTLNEVADKYFTT---KDSSRSTFDRISKYKKHIAPVLGHRGVTGITKN 127 Query: 118 HIRSGVES----RKHTPSSAIQFLTSMRVLFKWAVRQEYVA-INPCLSVERPKRKTEGIR 172 + S +S + +P +A + +F + ++E +NP L V++ K + R Sbjct: 128 DLISIQDSIIKEQNLSPQTANMVIELFGTIFIYGFKEEMYEAVNPTLKVQKFKVRNTRER 187 Query: 173 PWTKEDMQ-------QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFS 223 K +++ Q+ + G L + L +G R + N+I Sbjct: 188 FLNKLEIEELFDAAKQYDEKNANGGVLELFTKLALTTGARMESVLNIKKCDIDLQNDIIR 247 Query: 224 IKTQKTGTIITV-ELPDGFMKLL-AMTPIGKET-FFI--NNDKQKMNATQFSIWFKAKAT 278 + K G + + D +LL + K T + I NN+ +K+ A Q K Sbjct: 248 LVDLKNGGEVYSGYITDTTRELLYQKSKAIKFTDYLISFNNNGKKIGARQLQTRLKPLLD 307 Query: 279 KA---GVNKS-------AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GAD 327 G++ H +R A+ A A ++ + Q Y K D Sbjct: 308 DLFNQGLDVKDRKNRIVIHSLRHTCASQLAMANVPILQIQELLNHADISQTVRYAKLQGD 367 Query: 328 RIRLGIKNS 336 + I+ Sbjct: 368 ANKKAIQGV 376 >gi|262195487|ref|YP_003266696.1| integrase family protein [Haliangium ochraceum DSM 14365] gi|262078834|gb|ACY14803.1| integrase family protein [Haliangium ochraceum DSM 14365] Length = 395 Score = 95.5 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 46/331 (13%), Positives = 92/331 (27%), Gaps = 81/331 (24%) Query: 72 KWL--ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD--------YRKITTKHIRS 121 +WL +Y ++ + ++R ++ + R + + + + Sbjct: 15 RWLARFDDYLRTER--GGSAHTRAAYGRDLAEFGRVYEERSGAPPVPAQVAVLDIRAHLA 72 Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 G+ R + A + L+++R F + V++ + NP V PKR+ R +D + Sbjct: 73 GLYERNDAATMARK-LSALRSFFAFLVQRGALDNNPARGVRSPKRRKALPRALDVDDAFR 131 Query: 182 FKS-------------------------------------------------FWSEGSQP 192 + Sbjct: 132 LIEAPTRAPASGADAAAASPARNVGRSGGRSANRAGATGTASAGKNKRAKTSREPLKLRD 191 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIF-----SIKTQKTGTIITVELPDGFMKLLAM 247 R E L SGLR + C + + ++ K G V L + L Sbjct: 192 RAIAEVLYGSGLRVGECCALDLDDIDRARLSSALVRVRRGKGGKERIVPLGRQAVAALDA 251 Query: 248 -------------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFS 293 F++ ++ A + G + H +R Sbjct: 252 YLNVRPLLRDPKTGARDPAALFLSYRGTRLTTRSVQRMIGRNAQEVGAYEATPHALRHSF 311 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTK 324 AT D+G + G ++ + YTK Sbjct: 312 ATHLLDSGVDLRAIQELLGHASLASTQIYTK 342 >gi|255015356|ref|ZP_05287482.1| putative bacteriophage integrase [Bacteroides sp. 2_1_7] Length = 389 Score = 95.5 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 44/213 (20%), Positives = 76/213 (35%), Gaps = 18/213 (8%) Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVE---RPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191 + + A++ + +AINP ++ +PK + T E++++ + E Sbjct: 176 NLYKKFAWVIRKAMQADIMAINPLDKIDNTDKPKPEDGQREFLTIEEIKRLMNTPCEDDM 235 Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNN-----IFSIKTQKTGTIITVELPDGFMKLLA 246 + AF F GLR SD + L + I I+ KT + +K L Sbjct: 236 LKCAFIFCCLVGLRYSDVKKLVWNDLYEDNEGAIILRIRVTKTKRCEDFPISKEALKWLP 295 Query: 247 -MTPIGKETFFINNDKQKMNATQFSIW-FKAKATKAGVNK--SAHGVRKFSATISADAGA 302 G E F K+ S K T AG+ K + H R +AT++ G Sbjct: 296 ERIGSGDEKIF------KLPKNDNSNRKLKHWCTLAGITKNVTFHVARHTAATLNLSLGV 349 Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335 + G + + Y K D + + Sbjct: 350 PIETVSKLLGHTKISTTQIYAKVIDANKKAAVH 382 >gi|254501567|ref|ZP_05113718.1| site-specific recombinase, phage integrase family protein [Labrenzia alexandrii DFL-11] gi|222437638|gb|EEE44317.1| site-specific recombinase, phage integrase family protein [Labrenzia alexandrii DFL-11] Length = 397 Score = 95.5 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 51/277 (18%), Positives = 89/277 (32%), Gaps = 24/277 (8%) Query: 90 NSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESRKHTPS--SAIQFLTSMRVLFKW 146 S D +I G+ +T I S V+ + +A + L ++R W Sbjct: 122 RSARETTRLLDHDVIPVIGNKSIHDVTKHDIISIVDRVSGRGAHTTANRTLAAVRKFLNW 181 Query: 147 AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK-SFWSEGSQPRLAFEFLLYSGLR 205 V + + +P +V PK++ R ++ + G + L + R Sbjct: 182 CVGRGVIETSPAANVAAPKKEVSRDRALDTAELAAILNATDKMGFPFGYYVKLLFLTAQR 241 Query: 206 CSDSCRAGVQHLQNNIFSIK----TQKTGTIITVELPDGFMKLLAMTP-------IGKET 254 + + + + K G V L + +L P + Sbjct: 242 RGEVSGMRWSEINLDSATWTIPAERAKNGKAHVVHLSQASLDVLQSIPKFANANGTESDL 301 Query: 255 FFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGW 313 F N K + + FS K +GV + H +R+ T A G H A Sbjct: 302 VFTTNGKT--SISGFSKAKKQLDELSGVTDWRIHDIRRTVVTQMAAMGVWHHVADAILNH 359 Query: 314 KTVDQ---AETYTKGA---DRIRLGIKNSRRISSVVD 344 KT A Y + DR R ++R+ + D Sbjct: 360 KTGAISGVAAVYQRHEFLDDRKRALDDWAKRLREISD 396 >gi|172040496|ref|YP_001800210.1| integrase/recombinase [Corynebacterium urealyticum DSM 7109] gi|171851800|emb|CAQ04776.1| integrase/recombinase [Corynebacterium urealyticum DSM 7109] Length = 352 Score = 95.5 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 44/311 (14%), Positives = 93/311 (29%), Gaps = 53/311 (17%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132 L+ +Y + + N+ +++ + G D T H R + +S Sbjct: 35 LLEDYVDYLRYNLGRSENTIRAYQRDLTDSLE--GLRDIESFTLDHARDVLGYAADDGAS 92 Query: 133 AIQFL---TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS----- 184 + +SM+ K+ ++E + NP ++ PK + R + + Sbjct: 93 RSRLSRLASSMKGFGKFLAQREVLPANPVSALRLPKGEKTLPRVLRSDQARTLLDGLKRD 152 Query: 185 --------------------------FWSEGSQPRLAF--EFLLYSGLRCSDSCRAGVQH 216 + + R F E L +G+R ++ V+ Sbjct: 153 ALEPPAPHEGSEDAPATAQPTGNKNQRHATARRVRDWFIAELLFGTGIRVGEAEAIDVED 212 Query: 217 LQNNIFSIKTQKTGTIITV---------ELPDGFMKLLAMTPIGKETFFINNDKQKMN-- 265 + ++ G V L + + ++N Sbjct: 213 FDRANWLLRVTGKGNKTRVVPYGGVIDEALTHWLSHRGELAQPANPALLVGVRGGRLNQR 272 Query: 266 --ATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 + A + S HG R +AT + GA + G +++ + YT Sbjct: 273 EIRRVIDQAIRRHPELAVGHMSPHGFRHSAATAVLEGGADLRVVQELLGHASMNTTQIYT 332 Query: 324 K-GADRIRLGI 333 GA+R++ Sbjct: 333 HVGAERLKAAY 343 >gi|160936910|ref|ZP_02084274.1| hypothetical protein CLOBOL_01799 [Clostridium bolteae ATCC BAA-613] gi|158440100|gb|EDP17847.1| hypothetical protein CLOBOL_01799 [Clostridium bolteae ATCC BAA-613] Length = 290 Score = 95.5 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 46/265 (17%), Positives = 89/265 (33%), Gaps = 23/265 (8%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131 +I +Y H ++ + + Y + + + K + + + +P Sbjct: 8 DNMIKDYCGEMHQNEMSSGTIKKYFYYLNLFRKYADGKPVSKELVIVWKDTLREQ-FSPV 66 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI----RPWTKEDMQQFKSFWS 187 +A L ++ FKW + +V K K R ++E+ + + Sbjct: 67 TANSALAALNGFFKW---FGWED----CTVRLIKVKHRMFCSGQRELSREEYIRLVNVAR 119 Query: 188 EGSQPRLAFEF--LLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245 RL+ + +G+R S+ V + + + G I TV L +G +LL Sbjct: 120 GEGNERLSLLLQTVCSTGIRISELSFITVNAVDKQVAEVDC--KGKIRTVFLTNGLCRLL 177 Query: 246 AMTPIGKE----TFFINNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISA 298 + F+ + M+ + K + KAGVN H +R A + Sbjct: 178 KAYARKRNIISGMIFVTRSGKPMDRSNIWREMKQISHKAGVNPDKVFPHNLRHLFARVYY 237 Query: 299 DAGATAHELMATYGWKTVDQAETYT 323 L G +V+ YT Sbjct: 238 SQEKDLVRLADILGHSSVNTTRIYT 262 >gi|41408246|ref|NP_961082.1| hypothetical protein MAP2148 [Mycobacterium avium subsp. paratuberculosis K-10] gi|41396601|gb|AAS04465.1| hypothetical protein MAP_2148 [Mycobacterium avium subsp. paratuberculosis K-10] Length = 227 Score = 95.5 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 35/200 (17%), Positives = 73/200 (36%), Gaps = 15/200 (7%) Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRL 194 +++ KW V + ++ +P L ++ PK + + T++ +++ + S + Sbjct: 8 ALKRYAKWLVDEGELSSDPLLGLKPPKGDQKVVNALTEDQLKRLIAACQGKSLMDRRDET 67 Query: 195 AFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVE--------LPDGFMKL 244 + +GLR +++ + + I +I K G + Sbjct: 68 IVRLMAETGLRANETLSLQITDVNLDAGIVTIVRGKGGKGRVSPFSVQTATAIDRYLRAR 127 Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGAT 303 A ++ + + S K +AT AG+ H +R +AT AG + Sbjct: 128 RAHRLSNTGALWLGGGGKSLGYYGLSKALKQRATAAGIETFHLHMLRHTAATRWLRAGGS 187 Query: 304 AHELMATYGWKTVDQAETYT 323 LM+ GWK + Y Sbjct: 188 ESGLMSVAGWKNRSMIDRYV 207 >gi|325479493|gb|EGC82589.1| phage integrase, N-terminal SAM domain protein [Anaerococcus prevotii ACS-065-V-Col13] Length = 329 Score = 95.5 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 49/305 (16%), Positives = 100/305 (32%), Gaps = 52/305 (17%) Query: 74 LISEYRKS-AHWGSLAVNSRISFESYFDQIIR-----------------KSGDFD----- 110 LI++Y L+ N+ + + +IR + D + Sbjct: 9 LITDYLNYLKSIRGLSSNTIKEYSYDLNLLIRFMIVRKIYYGNIVKFNKEFNDDEINSII 68 Query: 111 ----YRKITTKHIRSGV----ESRKHTPSSAIQFLTSMRVLFKWAV-RQEYVAINPCLSV 161 + +T + S + + T S+ + +++++ +K+ E + N + Sbjct: 69 NPSFFETLTLQDFYSYLSYLDNEKNDTASTRSRKISAIKSFYKYLYSEIEVINSNVSEKL 128 Query: 162 ERPKRKTEGIRPWTKEDMQQF------KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQ 215 PK T + ++ + S+ L +G+R S+ + Sbjct: 129 TNPKISQRQPVYLTLTETERLLDTINNEKNDFLRSRDLAIVFTFLTTGMRLSELVSIDIT 188 Query: 216 HLQNNIFSIKTQKTGTIITVELPDG---------FMKLLAMTPIGKETFFINNDKQKMNA 266 + N+ F+I K TV L D ++ + + FI+ K++++ Sbjct: 189 DIVNDHFNII-GKGNKERTVYLTDNCLQLIYSYILVRAKYIGDKDIDALFISTRKKRISN 247 Query: 267 TQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETY 322 KAG + S H +R +AT+ G L G V + Y Sbjct: 248 RAVQSTIDKYLKKAGFDTSIYSTHKLRHTAATLMYKYGNVDIRALKDILGHSNVSTTQIY 307 Query: 323 TKGAD 327 T D Sbjct: 308 THLDD 312 >gi|296447748|ref|ZP_06889663.1| tyrosine recombinase XerD [Methylosinus trichosporium OB3b] gi|296254725|gb|EFH01837.1| tyrosine recombinase XerD [Methylosinus trichosporium OB3b] Length = 314 Score = 95.5 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 43/274 (15%), Positives = 87/274 (31%), Gaps = 30/274 (10%) Query: 89 VNSRISFESYFDQIIRK-SGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWA 147 R E Y + R + + + ++SR T +++ + L+++R K+ Sbjct: 29 DAYRRDLEDYVAHLERTGAEPLGVTTDGLRAYLATLQSRGMTAATSARRLSALRQFHKFL 88 Query: 148 VRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG--------------SQPR 193 Y A +P +E P+R+ +++++ EG ++ Sbjct: 89 YVDRYRADDPSTPLEGPRRQHSAPDILAMDEVERLLETAREGLEDESRAAGERLRAARLY 148 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-ELPDGFMKLL------- 245 E L +GLR S+ ++ + G+ + + L Sbjct: 149 ALLETLYATGLRVSELVSLPASAARSRDSFFTVRGKGSKERLAPMTPRAKAALTVFRALL 208 Query: 246 --AMTPIGKETFFINNDK--QKMNATQFSIWFKAKATKAGV---NKSAHGVRKFSATISA 298 + F +D + F+ K A AG+ + S H +R A+ Sbjct: 209 AKHAPGLADSHFLFPSDAAEGHLTRQAFARDLKTAAAAAGLSARDISPHALRHAFASHLL 268 Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRIRLG 332 GA + G + + YT D Sbjct: 269 QNGADLRVVQELLGHADISTTQIYTHVLDERIRA 302 >gi|294085081|ref|YP_003551841.1| putative site-specific integrase/recombinase [Candidatus Puniceispirillum marinum IMCC1322] gi|292664656|gb|ADE39757.1| probable site-specific integrase/recombinase [Candidatus Puniceispirillum marinum IMCC1322] Length = 326 Score = 95.5 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 54/277 (19%), Positives = 99/277 (35%), Gaps = 17/277 (6%) Query: 57 KREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITT 116 K + S TTL+ L+ Y K L + +++ + +T Sbjct: 45 KNTSLPSVDVGDTTLRELLQTYAKEVS-SHLKGSEIETYKLNL-YSKHPIAENKLVNLTQ 102 Query: 117 KHIRSGVESR--KHTPSSAIQFLTSMRVLFKWAV-RQEY-VAINPCLSVERPKRKTEGIR 172 +H + R + + L R +FK A+ + Y + NP ++ P R Sbjct: 103 RHFEHLRDERLKQVKSGTVHADLMMFRRVFKTAIHKWGYGLPKNPVEYLQLPSPHKSRKR 162 Query: 173 PWTKEDMQQFKSFWSEGSQPRLA--FEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQK 228 + + + S +A EF + +G+R S+ + + N S+ K Sbjct: 163 RLMPSEKEHLLTAASLQRNIYIASIVEFAIETGMRRSEILKLRWCDVDLENGFASLYDTK 222 Query: 229 TGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAH 287 G V L +++L P E F ++AT + + KAG+ + H Sbjct: 223 NGEDRRVPLTRRCIEVLQTVPHTNEQVF------PISATCLRLAWNRARKKAGITDLRFH 276 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 +R + + + G + E+ G K V Q YT Sbjct: 277 DLRHEAVSRFFEMGMSVPEVALISGHKDVRQLFRYTH 313 >gi|227523354|ref|ZP_03953403.1| bacteriophage integrase [Lactobacillus hilgardii ATCC 8290] gi|227089460|gb|EEI24772.1| bacteriophage integrase [Lactobacillus hilgardii ATCC 8290] Length = 383 Score = 95.5 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 51/287 (17%), Positives = 99/287 (34%), Gaps = 44/287 (15%) Query: 100 DQIIRKSGDFDYRKITTKHIRSGVESR-KHTPSSAIQFLTSMRVLFKWAVRQEYVA-INP 157 + I+ + G+ R IT ++ V K + ++ +F +A++ Y+ NP Sbjct: 98 NHILPELGNKRIRTITIAQVQRAVNKWFKQATYNYKRWYEYTMAIFDYALKHGYMHGDNP 157 Query: 158 CLSVERPKRKT----EGIRPWTKEDMQQFKSFWS--EGSQPRLAFEFLLYSGLRCSDSCR 211 + PKRK + W K+ + QF S+ E + F L ++G+R + Sbjct: 158 AKMITIPKRKETWGEKPENFWDKQQLAQFFSYIDPKEELEKYTLFRVLAFAGVRRGECLA 217 Query: 212 AGVQHL----------------QNNIFSIKTQKTGTIITVELPD---------------- 239 + I+ KT V D Sbjct: 218 LTWNDVNFSKSTLSINKTLTQGMRGKQIIQPPKTKKGQRVIALDKITLNYLKQWRARQRR 277 Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISA 298 ++ L T + F N++ + + W + K + HG R SA++ Sbjct: 278 EYLMLGFNTIQRGQLIFANSNNGFKSLNTPAKWLNKIIKAHNLKKITVHGFRHTSASMLF 337 Query: 299 DAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSVVD 344 +AGAT E+ G + YT + + + ++++ +D Sbjct: 338 EAGATIKEVQTRLGHEDAQTTLNIYTHVT--KKQDNQAAEKLANYLD 382 >gi|294647344|ref|ZP_06724937.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CC 2a] gi|294809035|ref|ZP_06767757.1| site-specific recombinase, phage integrase family [Bacteroides xylanisolvens SD CC 1b] gi|292637303|gb|EFF55728.1| site-specific recombinase, phage integrase family [Bacteroides ovatus SD CC 2a] gi|294443760|gb|EFG12505.1| site-specific recombinase, phage integrase family [Bacteroides xylanisolvens SD CC 1b] Length = 368 Score = 95.5 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 48/234 (20%), Positives = 86/234 (36%), Gaps = 14/234 (5%) Query: 109 FDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168 +R+ + +R + +SA + ++ R L K A R ++ N +++ + + Sbjct: 137 KKFREYLLNVKQLKHSNRSISLNSASGYYSTFRGLLKIAYRDKWFRENINDYLDKIEPQD 196 Query: 169 EGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL-----QNNIFS 223 T ++++Q + + + A F +GLR SD + Q Sbjct: 197 VKKEYLTLDEVKQLAATPCDIPVLKAASLFACLTGLRISDILNLQWEDFTIAPDQGYCLR 256 Query: 224 IKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283 I+TQKT T T+ + + L TP + F + K+ M W K AG+ Sbjct: 257 IRTQKTQTEATLPISYEAYE-LCGTPGTGKVF--KDLKRSMINYPLKNWLKK----AGIT 309 Query: 284 KSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335 KS H R A I G + + K V + Y + + N Sbjct: 310 KSITFHCFRHSYAVIQISLGTDIYTVSKMLTHKNVSTTQIYADLVNSKKRETAN 363 >gi|196229377|ref|ZP_03128242.1| integrase family protein [Chthoniobacter flavus Ellin428] gi|196226609|gb|EDY21114.1| integrase family protein [Chthoniobacter flavus Ellin428] Length = 354 Score = 95.5 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 55/329 (16%), Positives = 107/329 (32%), Gaps = 22/329 (6%) Query: 14 ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73 R +HG + K G++IR + + + A + + + + T Sbjct: 15 YRNKHG-TYFALLKVRGKQIRRSLKTDDSALARRRLA---EFRTKAHGLTGDARTMTFNQ 70 Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH--TPS 131 L + L +S + + R I I R + Sbjct: 71 LAKRWLAFIK-PDLRPSSHRRLSGIVETVKPFFAGLPVRSIGQPQIEKWKIKRGGAVSAR 129 Query: 132 SAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 S +R LF++A + NP L +++ K + TKE ++ Sbjct: 130 SFNYEREVLRRLFEYARGNLRIILDNPALDIKKRKVGKAELVIPTKEQFRKLVETLRAEP 189 Query: 191 QPRLA---FEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQ-----KTGTIITVELPDGF 241 + ++A EFL YSGLR +++ + + + ++ + T K + T+ L Sbjct: 190 RVKIAADFVEFLGYSGLRLTEATQVRWRDVNFDSELLLVTGGEQGTKNHEVRTIPLFPPL 249 Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADA 300 +LL + + + K G+ H +R F + + +A Sbjct: 250 RRLLERLAESQPK--RTDSHRLFPLDSAKTAIGTACKKVGLPHFGHHAMRHFFCSNAIEA 307 Query: 301 GATAHELMATYGWKTVD--QAETYTKGAD 327 G + G K A+TY + Sbjct: 308 GCDFKVIAGWLGHKDGGVLVAQTYGHLRN 336 >gi|46562173|ref|YP_009122.1| phage integrase family site specific recombinase [Desulfovibrio vulgaris str. Hildenborough] gi|46447710|gb|AAS94376.1| site-specific recombinase, phage integrase family [Desulfovibrio vulgaris str. Hildenborough] gi|311235464|gb|ADP88317.1| integrase family protein [Desulfovibrio vulgaris RCH1] Length = 343 Score = 95.5 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 42/263 (15%), Positives = 80/263 (30%), Gaps = 29/263 (11%) Query: 88 AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFLTSMRVLF 144 + + + R + I HI + S + P++ L ++ F Sbjct: 59 SPGTVRVYLPTLLAFFR-FAETPVTHIRVWHIEDWLNSLEQAAYKPATIATKLACIKSFF 117 Query: 145 KWAVRQEYVAINPCLSVERPKR--KTEGIRPWTKEDMQQFKSFWSEGSQPR--LAFEFLL 200 + + + +NP V+ PK G R E++Q+ + R L L Sbjct: 118 GYLWKCGLLPLNPAAPVKGPKHIEGHHGDRVLLAEEVQELLEHTRRHAPARDHLMCRLLF 177 Query: 201 YSGLRCSDSCRAGV----QHLQNNIFSIKTQKTGTIITVELPDGFMKLL----------- 245 +G R +++ + ++ ++ K + +P L Sbjct: 178 AAGARAAEAVSLRWGDLRRDVRGRWYATVMGKGRKTRHLHIPKDLAADLLVWKGALYSIE 237 Query: 246 ---AMTPIGKETFFINND--KQKMNATQFSIWFKAKATKA-GVNKSAHGVRKFSATISAD 299 + F N Q + A G S H +R AT S Sbjct: 238 PYQPAPGLDAVPLFPNRRVLTQPITVKTAYRIVTRWGEAALGRKISPHWLRHTFATHSRL 297 Query: 300 AGATAHELMATYGWKTVDQAETY 322 AGAT ++ G +++ Y Sbjct: 298 AGATLEQIRVALGHESIQTTIRY 320 >gi|303233777|ref|ZP_07320431.1| site-specific tyrosine recombinase XerC [Finegoldia magna BVS033A4] gi|302495211|gb|EFL54963.1| site-specific tyrosine recombinase XerC [Finegoldia magna BVS033A4] Length = 326 Score = 95.5 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 35/204 (17%), Positives = 71/204 (34%), Gaps = 17/204 (8%) Query: 140 MRVLFKWAVRQEYVAI-NPCLSVERPKRKTEGIRPWTKED------MQQFKSFWSEGSQP 192 +R +K+ + + I NP ++ PK+ T ++ + + ++ Sbjct: 101 IRTFYKYLINIRKLDIINPAELLDSPKKNIRQPVYLTLDESLDLLKVILREKDEEIKARD 160 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA-----M 247 L G+R S+ + H++ N + K TV L D + + Sbjct: 161 YCITVLFLNCGMRLSELSSINIDHIKTNTLRVI-GKGNKERTVYLNDMCLDAIDNYLKIR 219 Query: 248 TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAG-AT 303 I + FI+ + +M+ + G + S H +R +AT+ G Sbjct: 220 PEIDNDALFISKKRNRMSNRAIQYRIEHYLKIGGFDTSIYSVHKLRHTAATLMYQYGNVD 279 Query: 304 AHELMATYGWKTVDQAETYTKGAD 327 L G ++V + YT + Sbjct: 280 IKVLQEILGHESVSTTQIYTHVDN 303 >gi|218709877|ref|YP_002417498.1| Site-specific recombinase IntIA [Vibrio splendidus LGP32] gi|218322896|emb|CAV19073.1| Site-specific recombinase IntIA [Vibrio splendidus LGP32] Length = 324 Score = 95.5 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 50/312 (16%), Positives = 102/312 (32%), Gaps = 62/312 (19%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130 I EY H+ A+ + ++ + Q I R +T++H+ + Sbjct: 6 FLAYIQEYMLGRHY---ALRTTQAYIYWIHQYILYHNKKHPRNLTSRHVEDFLTHLVVDR 62 Query: 131 SSAIQF----LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 SA + L ++ L+K + QE + ++ + R + + T E++ +F + Sbjct: 63 KSAQKTQSLALNAIVFLYKE-IIQEPIELD--MQFRRSDKSRKLPTVMTPEEISRFFNHC 119 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKL 244 S + L ++ + SGLR + R +Q + + S++ K G V + Sbjct: 120 SPNFK--LPYQLMYGSGLRLMECLRLRMQDIDYDYKSVRVWQGKGGKNRIVTIAPELFPS 177 Query: 245 LAMTPIGKETFFINN--------------------------------------------- 259 + + ++ + Sbjct: 178 IKLQQQKSAEYYQQDIHDKAFSGVYLPDSLAKKYPSAERSLNWQFLFPSARLAPDLRTGE 237 Query: 260 -DKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTV 316 + ++ T K + KA + K S H +R AT +GA + G + Sbjct: 238 LRRHHIHPTALQKHIKVASQKADIEKNISCHTLRHSFATHLLQSGADIRTVQEQLGHTDL 297 Query: 317 DQAETYTKGADR 328 + YT DR Sbjct: 298 KTTQIYTHIIDR 309 >gi|289444200|ref|ZP_06433944.1| probable phirv2 prophage integrase [Mycobacterium tuberculosis T46] gi|289417119|gb|EFD14359.1| probable phirv2 prophage integrase [Mycobacterium tuberculosis T46] Length = 291 Score = 95.5 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 51/286 (17%), Positives = 98/286 (34%), Gaps = 31/286 (10%) Query: 85 GSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRK-HTPSSAIQFLTSMRV 142 + +R + D I+ D D R IT +R + TP+ + +R Sbjct: 4 RGIKDRTRAHYRKLLDNHILATFADTDLRDITPAAVRRWYATTAVGTPTMRAHSYSLLRA 63 Query: 143 LFKWAVRQEYVAINPCL-SVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY 201 + + A+ + + NPC S R+ IRP T ++++ + Q + + Sbjct: 64 IMQTALADDLIDSNPCRISGASTARRVHKIRPATLDELETITKAMPDPYQAFV--LMAAW 121 Query: 202 SGLRCSDSCRAGVQHLQ---------------NNIFSIKTQKTGTII-TVELPDGFMKLL 245 +R + + + F + T K+ + + +P + + Sbjct: 122 LAMRYGELTELRRKDIDLHGEVARVRRAVVRVGEGFKVTTPKSDAGVRDISIPPHLIPAI 181 Query: 246 ------AMTPIGKETFF--INNDKQKMNATQFSIWFKAKATKAG-VNKSAHGVRKFSATI 296 + P + F +N+ + + + F AG + H +R A + Sbjct: 182 EDHLHKHVNPGRESLLFPSVNDPNRHLAPSALYRMFYKARKAAGRPDLRVHDLRHSGAVL 241 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGAD-RIRLGIKNSRRISS 341 +A GAT ELM G T A Y A R R +++ Sbjct: 242 AASTGATLAELMQRLGHSTAGAALRYQHAAKGRDREIAALLSKLAE 287 >gi|221218583|ref|YP_002527541.1| class 1 integron integrase protein IntI1 [Escherichia coli] gi|261888715|ref|YP_003264403.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar Typhimurium] gi|215252911|gb|ACJ63570.1| class 1 integron integrase protein IntI1 [Escherichia coli] gi|261857302|emb|CBA11369.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar Typhimurium] gi|312949085|gb|ADR29911.1| class 1 integron integrase protein IntI1 [Escherichia coli O83:H1 str. NRG 857C] Length = 372 Score = 95.5 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 42/306 (13%), Positives = 93/306 (30%), Gaps = 62/306 (20%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHT 129 ++ + R+ + ++ + ++ + IR G + + + + + RK + Sbjct: 16 VLDQLRERIRYLHYSLRTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75 Query: 130 PSSAIQFLTSMRVLFK--WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 S+ Q L ++ + ++ + RP+ T +++ + F Sbjct: 76 VSTHRQALAALLFFYGKVLCTDLPWLQ-----EIGRPRPSRRLPVVLTPDEVVRILGFL- 129 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQKTGTIITVELPDGFMKLL 245 EG RL + L +G+R S+ + V+ + ++ K + LP+ L Sbjct: 130 EGEH-RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSL 188 Query: 246 AMTPIGKETFFINN---------------------------------------------D 260 +++ + Sbjct: 189 REQLSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVR 248 Query: 261 KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318 + M F FK +AG+ K + H +R AT +G + G V Sbjct: 249 RHHMYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVST 308 Query: 319 AETYTK 324 YT Sbjct: 309 TMIYTH 314 >gi|254437562|ref|ZP_05051056.1| site-specific recombinase, phage integrase family protein [Octadecabacter antarcticus 307] gi|198253008|gb|EDY77322.1| site-specific recombinase, phage integrase family protein [Octadecabacter antarcticus 307] Length = 309 Score = 95.5 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 42/258 (16%), Positives = 82/258 (31%), Gaps = 15/258 (5%) Query: 82 AHWGS--LAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139 WG+ + + E +++ G K+T + +++ K TP A + Sbjct: 24 PDWGNRLVTEITPYDVEKLLNKVAA--GRARPSKVTPNNRARKLQAAKPTPVRANRTGEV 81 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA--FE 197 +R +F +AV + NP S R R E++ + R A Sbjct: 82 LRKMFTYAVGWGWRDDNPASSFRRRIENPRE-RFLCHEEIHKLAEALETAEDRRAADIIR 140 Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKT----QKTGTIITVELPDGFMKLLA----MTP 249 + +G R + +A +H S K I + + D ++ + P Sbjct: 141 MCMLTGARVGEVRQAQFEHFNLEHLSWSKPASMTKQRKIHRLPISDEAAAIVRQRQLLVP 200 Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMA 309 G F + + W + + H +R A++ GA+ + Sbjct: 201 RGCVLLFPGDVPGQPVREIRRFWAHIQKQVGIPDVRIHDLRHTFASLLVSGGASLEMIGK 260 Query: 310 TYGWKTVDQAETYTKGAD 327 G + + Y D Sbjct: 261 LLGHSQMQTTQRYAHLMD 278 >gi|296161182|ref|ZP_06843991.1| integrase family protein [Burkholderia sp. Ch1-1] gi|295888523|gb|EFG68332.1| integrase family protein [Burkholderia sp. Ch1-1] Length = 316 Score = 95.5 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 43/274 (15%), Positives = 93/274 (33%), Gaps = 29/274 (10%) Query: 84 WGSLA-VNSRISFE---SYFDQIIRKSGDFDYRKITTKHI---RSGVESRKHTPSSAIQF 136 + +L +R ++ F + D+R + H+ R +E R + ++ + Sbjct: 32 FANLDNPRTRRAYRIDLRDFMSFTAITRPEDFRIVARAHVLAWRKVLEDRALSGATIRRK 91 Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP--WTKEDMQQFKSFWSEGS---- 190 L ++ LF++ + V NP +RPK ++ + + + Sbjct: 92 LAALSSLFEYLCEKNAVDFNPVKGAKRPKVESNEGKTPALGDHQARALLDAPDPATLKGK 151 Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTII-TVELPDGFMKLLAM 247 + R LLY GLR + C+ V+ + + + ++ G + + L G + + Sbjct: 152 RDRALLSVLLYHGLRREELCQLKVRDIHARRGVLHLRIHGKGNKLRYLPLHAGSAERIHA 211 Query: 248 -------TPIGKETFFINNDKQ---KMNATQFSIWFKAKATKAGVNKS---AHGVRKFSA 294 F ++ + A A A A + H +R +A Sbjct: 212 YLEVAGHGETPHAPLFQPARRKTHAALTADGVYKIVLAYAAGAQIEVQGFGVHSLRATAA 271 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADR 328 T + + A ++ G + Y + R Sbjct: 272 TNALEHEADIAKVQEWLGHANIATTRIYDRRKSR 305 >gi|260201791|ref|ZP_05769282.1| integrase [Mycobacterium tuberculosis T46] Length = 296 Score = 95.5 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 51/286 (17%), Positives = 98/286 (34%), Gaps = 31/286 (10%) Query: 85 GSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRK-HTPSSAIQFLTSMRV 142 + +R + D I+ D D R IT +R + TP+ + +R Sbjct: 9 RGIKDRTRAHYRKLLDNHILATFADTDLRDITPAAVRRWYATTAVGTPTMRAHSYSLLRA 68 Query: 143 LFKWAVRQEYVAINPCL-SVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY 201 + + A+ + + NPC S R+ IRP T ++++ + Q + + Sbjct: 69 IMQTALADDLIDSNPCRISGASTARRVHKIRPATLDELETITKAMPDPYQAFV--LMAAW 126 Query: 202 SGLRCSDSCRAGVQHLQ---------------NNIFSIKTQKTGTII-TVELPDGFMKLL 245 +R + + + F + T K+ + + +P + + Sbjct: 127 LAMRYGELTELRRKDIDLHGEVARVRRAVVRVGEGFKVTTPKSDAGVRDISIPPHLIPAI 186 Query: 246 ------AMTPIGKETFF--INNDKQKMNATQFSIWFKAKATKAG-VNKSAHGVRKFSATI 296 + P + F +N+ + + + F AG + H +R A + Sbjct: 187 EDHLHKHVNPGRESLLFPSVNDPNRHLAPSALYRMFYKARKAAGRPDLRVHDLRHSGAVL 246 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGAD-RIRLGIKNSRRISS 341 +A GAT ELM G T A Y A R R +++ Sbjct: 247 AASTGATLAELMQRLGHSTAGAALRYQHAAKGRDREIAALLSKLAE 292 >gi|237811210|ref|YP_002895661.1| phage integrase family protein [Burkholderia pseudomallei MSHR346] gi|237503525|gb|ACQ95843.1| phage integrase family protein [Burkholderia pseudomallei MSHR346] Length = 443 Score = 95.5 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 51/300 (17%), Positives = 108/300 (36%), Gaps = 20/300 (6%) Query: 45 PAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-II 103 +++ + + + R+ P T+K L +++ + ++ +++ D+ I+ Sbjct: 75 QDWLADVRKGSDPSAAKQAARQAP-TVKELCTQFIEEYSKTRNKPSTVETYQDQIDRYIV 133 Query: 104 RKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAI--NPCLSV 161 K G ++T + + + ++A + L +R + A Y NPC V Sbjct: 134 PKLGRIKVPELTRMDVTAMMRDMVKISATANRVLACLRKMLNMAEVWGYRPDGSNPCRHV 193 Query: 162 ERPKRKTEGIRPWTKEDMQQFKSFWS-------EGSQPRLAFEFLLYSGLRCSDSCRAGV 214 + R++ R T E++ + ++ E LA R S+ Sbjct: 194 PK-YRESGETRYITDEELARLYAYLDRADIEGLEHPTLTLAIRLQFEFSARMSEIRMLQW 252 Query: 215 Q--HLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPI--GKETFFINNDKQ--KMNATQ 268 + + KTG I+ + + +LL+ G + + ++ Sbjct: 253 AWIDFDSRRVAWPDSKTGG-ISKPMSEAAHQLLSNAHRIEGSPYVCPSIYDKEIPLSEGT 311 Query: 269 FSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 + ++ +A V HG+R +AT A++G MA KTV Y D Sbjct: 312 YYNSWRRILQRAKVPHVGTHGIRHRAATDIANSGVPVKVGMALTAHKTVSMFMRYVHTED 371 >gi|168233685|ref|ZP_02658743.1| phage integrase [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|194471329|ref|ZP_03077313.1| phage integrase [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194457693|gb|EDX46532.1| phage integrase [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|205332273|gb|EDZ19037.1| phage integrase [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] Length = 359 Score = 95.5 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 51/302 (16%), Positives = 94/302 (31%), Gaps = 34/302 (11%) Query: 55 TPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKI 114 TP R T+ I Y LA N+ + + K G+ ++ Sbjct: 60 TPAALIEKLKRSDTFTVSMWIDRYNVLLKRRDLAANTYKIRGNQLATVREKMGEMILAEV 119 Query: 115 TTKHIRSGVESR----KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170 TT+HI +ES K+T + A++ + + +F+ A+ + + NP P+ K Sbjct: 120 TTRHIAEFLESWIAEGKNTMAGAMR--SVLSDMFREAIVEGRITTNPVEPTRAPEIKVAR 177 Query: 171 IRPWTKEDMQQFKSFWSEGSQPR----LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226 R ++ + + + LA + L +G R D + + + Sbjct: 178 ERL----QLETYNATRTAAEHLPVWFPLAMDLALVTGQRREDIVNMKFSDIVDGRLHVTQ 233 Query: 227 QKTGTIITVELPDGFMK--------LLAMTPIGKETFFI------NNDKQKMNATQFSIW 272 KTG I L + + + F I N+ ++ + Sbjct: 234 IKTGMKIAFPLSLTLEAPGLRLGTVIDRCRLVSRTDFMISAGIRKNSPTGNIHPDGLTKK 293 Query: 273 FKAKATKAGVNKS-----AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 F +GV S H +R A G + + + Y D Sbjct: 294 FVKARKISGVKFSDNPPTFHEIR-SLAGRLYKDERGEEFAQKLLGHTSENTTKLYLDERD 352 Query: 328 RI 329 Sbjct: 353 NK 354 >gi|153807728|ref|ZP_01960396.1| hypothetical protein BACCAC_02010 [Bacteroides caccae ATCC 43185] gi|160886150|ref|ZP_02067153.1| hypothetical protein BACOVA_04157 [Bacteroides ovatus ATCC 8483] gi|160889087|ref|ZP_02070090.1| hypothetical protein BACUNI_01508 [Bacteroides uniformis ATCC 8492] gi|149129337|gb|EDM20551.1| hypothetical protein BACCAC_02010 [Bacteroides caccae ATCC 43185] gi|156108035|gb|EDO09780.1| hypothetical protein BACOVA_04157 [Bacteroides ovatus ATCC 8483] gi|156861554|gb|EDO54985.1| hypothetical protein BACUNI_01508 [Bacteroides uniformis ATCC 8492] Length = 354 Score = 95.5 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 43/290 (14%), Positives = 96/290 (33%), Gaps = 35/290 (12%) Query: 76 SEYRKSAHWGSLAVNSRISFESYFDQIIRK--------SGDFDYRKITTK---------- 117 +Y+ A + + R + + G + +I Sbjct: 70 DKYKLKADFL---EHYRKQLRKHDQKWEFVYLHFNNFVHGKCTFEEIDIDLCNKFREYLL 126 Query: 118 HIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177 + + T +SA + ++ R K R + N +++ + + + + Sbjct: 127 TAKKLRRKGRITRNSASGYWSTFRGFLKILYRNGMIKTNVNDFLDKIETEDVVKEYLSVD 186 Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL-----QNNIFSIKTQKTGTI 232 ++ + + ++A F + LR SD + + I TQK Sbjct: 187 ELYKLAETPCKKPILKIASLFSCMTSLRISDILALCWEDIVDYSAGGKCVHIITQKNKAE 246 Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290 + + + + L+ K F + + + I K AG+ K + H R Sbjct: 247 DIIPISEEALGLIGYNSEKKGLVF-----KGLMRSWTQIPMKEWIRSAGITKNITFHSYR 301 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340 + AT+ A AG + + K++ + Y K D + + S++I+ Sbjct: 302 RTFATLQAAAGTDIRTIQSIMAHKSITTTQRYIKVVDANKR--EASKKIT 349 >gi|323702859|ref|ZP_08114517.1| integrase family protein [Desulfotomaculum nigrificans DSM 574] gi|323532117|gb|EGB21998.1| integrase family protein [Desulfotomaculum nigrificans DSM 574] Length = 320 Score = 95.5 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 44/294 (14%), Positives = 93/294 (31%), Gaps = 50/294 (17%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131 LI +Y S FDQ +G+ + + V+ + S Sbjct: 9 ASLIEQYIDFKRNLGYKFKDAESVYYLFDQFTILNGETEIGITKELANKWAVKRPNESDS 68 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP--WTKEDMQQFKSFWSEG 189 + + + + + Y P + PK P +++E+M+ Sbjct: 69 TCYKRVMYLIQFSSFLNDSGY----PSYILRLPKAYKSTFTPYIFSREEMKAIFE----- 119 Query: 190 SQPRL---------------AFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTI 232 + RL L +G+R ++ V+ + I+ K G Sbjct: 120 ASDRLKIDNSMDSAVNVIPAILRMLYGTGIRIGEAVSLKVKDVNLTEKYIIIRQSKNGME 179 Query: 233 ITVELPDGFMKL-------LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284 + D + L + ++ FF+ + ++ N WF+ +AG++ Sbjct: 180 RMIPFSDSLADVCRQYRNSLQVLQDPEDYFFVKRNGRRCNPKGIYEWFRKVLWEAGISHG 239 Query: 285 ------SAHGVRKFSA----TISADAGATAH----ELMATYGWKTVDQAETYTK 324 H +R + T A++G + L G ++++ E Y + Sbjct: 240 GKRQGPRLHDLRHAFSVHSLTAMAESGLDLYYSLPILSEYLGHQSLEATEKYVR 293 >gi|291004130|ref|ZP_06562103.1| integrase/recombinase [Saccharopolyspora erythraea NRRL 2338] Length = 301 Score = 95.5 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 37/269 (13%), Positives = 82/269 (30%), Gaps = 29/269 (10%) Query: 85 GSLAVNSRISFESYFDQIIRKS--GDFDYRKIT------TKHIRSGVESRKHTPSSAIQF 136 L+ ++ ++ ++ GD + + + + + + + S+ + Sbjct: 16 RGLSAHTVRAYIGDVVSLLDHFCAGDEERKGLNGLGLTVLREWLAAQHADGASRSTLARR 75 Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF--------KSFWSE 188 S R WA R E + +P + P K + E + + Sbjct: 76 AASARTFTAWAHRAELLPHDPGPRLAAPAPKRKLPTVLRAEQAKSAMSASQAGAEQGDPI 135 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-----TIITVELPDGFMK 243 + E L +G+R S+ C + + + ++ G V D + Sbjct: 136 ALRDHAVVELLYATGVRVSELCGLDLDDVDHERRVVRVIGKGDKERAVPFGVPAEDAVSR 195 Query: 244 LLAM------TPIGKETFFINNDKQKMNATQFSIWFKAK--ATKAGVNKSAHGVRKFSAT 295 ++ T F+ +++ A + HG+R +AT Sbjct: 196 WISAGRPELATDASGPALFLGARGGRLDPRAVRRVVHDAVGAVSGATDVGPHGLRHSAAT 255 Query: 296 ISADAGATAHELMATYGWKTVDQAETYTK 324 + GA + G T+ + YT Sbjct: 256 HLLEGGADLRSVQELLGHATLATTQLYTH 284 >gi|227499531|ref|ZP_03929638.1| possible tyrosine recombinase XerC [Anaerococcus tetradius ATCC 35098] gi|227218410|gb|EEI83661.1| possible tyrosine recombinase XerC [Anaerococcus tetradius ATCC 35098] Length = 329 Score = 95.5 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 49/300 (16%), Positives = 98/300 (32%), Gaps = 53/300 (17%) Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIR-------KSGDFD-------------------Y 111 Y KS L+ N+ + + +IR GDF+ + Sbjct: 16 YLKSIR--GLSSNTIREYNYDLNLMIRFMLVRKIYYGDFERFDEQFDPESINKIVDPKFF 73 Query: 112 RKITTKHIRSGV----ESRKHTPSSAIQFLTSMRVLFKWA-VRQEYVAINPCLSVERPKR 166 ++ + S + + S+ + ++++R +K+ E + N + PK Sbjct: 74 ETLSLQDFYSYLSYLDNDKSDLASTRSRKISAIRSFYKYLFSEIEVIDTNISDKLTNPKI 133 Query: 167 KTEGIRPWTKEDMQQFKSFWS------EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN 220 T ++ ++ + L +G+R S+ ++ + N+ Sbjct: 134 SQRQPVYLTLQETEKLLETVKGEQNEFLKCRDLAIIFTFLTTGMRLSELVSVNLRDISND 193 Query: 221 IFSIKTQKTGTIITVELPDGFMKLLAMTP---------IGKETFFINNDKQKMNATQFSI 271 F+I K T+ L + L+ I + FI+ K++++ Sbjct: 194 HFNII-GKGNKERTIYLTSNCIDLIEKYIEVRGKYVKNIDIDALFISTRKKRISNRAVQS 252 Query: 272 WFKAKATKAGVN---KSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGAD 327 KAG + S H +R +AT+ G L G V + YT D Sbjct: 253 TIDKYLKKAGFDVSVYSTHKLRHTAATLMYKYGNVDIRALKDILGHANVSTTQIYTHLDD 312 >gi|237666570|ref|ZP_04526555.1| site-specific recombinase, phage integrase family [Clostridium butyricum E4 str. BoNT E BL5262] gi|237657769|gb|EEP55324.1| site-specific recombinase, phage integrase family [Clostridium butyricum E4 str. BoNT E BL5262] Length = 361 Score = 95.5 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 37/270 (13%), Positives = 91/270 (33%), Gaps = 44/270 (16%) Query: 88 AVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH---TPSSAIQFLTSMRVL 143 +N++ + D II D+ +++ ++ + +K + SS F + Sbjct: 81 KLNTQTYYRRILDNHIIPYFKDYKLKQLKADALQKFLNYKKRNGLSKSSITNFYGVLSGA 140 Query: 144 FKWAV-RQEYVAINPCLSVERPK-----RKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFE 197 K+AV Y+ NP V PK ++ + ++ T E+ + + + G + + Sbjct: 141 LKYAVYPCNYIKENPMYYVNIPKYDEAQKEAKDLKIITIEEFTRIINRFPMGENLYIPLQ 200 Query: 198 FLLYSGLRCSDSCRAGVQHLQ--NNIFSIK------------------TQKTGTIITVEL 237 +G+R + ++ N I +K + + ++ + Sbjct: 201 IGFNTGMRGGEIVALTWDNVDLENGIIHVKHTLIETGTKGMKKFILGTPKTKSSYRSIHI 260 Query: 238 PDGFMKLLAMTPI-------------GKETFFINN-DKQKMNATQFSIWFKAKATKAGVN 283 D + +L F + + + + + + + +N Sbjct: 261 GDTLINILKHHKEWQLMNKEKYGEWYEHSNFVCTKENGKPLTTSIYKYLSRVVNNELCIN 320 Query: 284 KSAHGVRKFSATISADAGATAHELMATYGW 313 + H +R AT+ + GA ++ G Sbjct: 321 FTMHSLRHTHATLLLENGANMKDMQKRLGH 350 >gi|159046242|ref|YP_001541914.1| integrase family protein [Dinoroseobacter shibae DFL 12] gi|157914001|gb|ABV95433.1| phage integrase [Dinoroseobacter shibae DFL 12] Length = 295 Score = 95.5 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 45/284 (15%), Positives = 92/284 (32%), Gaps = 18/284 (6%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT---P 130 L + + ++ S G T + +R+ T P Sbjct: 9 LRQRMIEDMRIRGMGDKAQKSHIRAIKDFAAFLGRSPDTA-TPEDLRAYQLHMTDTGITP 67 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM-QQFKSFWSEG 189 S+ + ++R F +E + ++ + ++ E++ + G Sbjct: 68 STFNTRIVALRFFFGMTCGREEMKR----YMQFRTEPRKLPVVFSVEEVSDILMAAPGPG 123 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTIITVELPDGFMKLLAM 247 + R A +GLR ++ C + + ++ ++ K V L G ++LL Sbjct: 124 LKYRAALSISYGAGLRAAEVCNLKIGDIDSDRMLIHVEQGKGQKDRKVMLSPGLLELLRA 183 Query: 248 TPIGKET---FFINNDK-QKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAG 301 F K ++ Q + F + AGV K + H +R AT +A Sbjct: 184 WWRETRPEGWLFPGKPKINPISPRQLNRAFTSAKHMAGVKKPATLHTLRHSFATHLLEAN 243 Query: 302 ATAHELMATYGWKTVDQAETYTKGADR-IRLGIKNSRRISSVVD 344 + G + YT A + IR + ++ + D Sbjct: 244 TDVRVIQVLLGHAKLTTTARYTHVATKTIRDTVSPYEMLARLQD 287 >gi|325107529|ref|YP_004268597.1| integrase family protein [Planctomyces brasiliensis DSM 5305] gi|324967797|gb|ADY58575.1| integrase family protein [Planctomyces brasiliensis DSM 5305] Length = 310 Score = 95.5 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 51/278 (18%), Positives = 102/278 (36%), Gaps = 18/278 (6%) Query: 59 EYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH 118 E I ++ T LI + N++ ++ + + R + Sbjct: 28 EVIGPVVQQADTDDQLIELWL-----HGRPKNTQTAYGREIVRFMDWV-KKPLRTVKLGD 81 Query: 119 IRSGVESRKH--TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE-GIRPWT 175 +++ + SS + LT+++ LF + R Y++ + +++ P + E R Sbjct: 82 VQAFADELSDSLKESSLHRALTAVKSLFAFGFRLGYLSFDVGRAMKLPTFRDELADRILG 141 Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKT-QKTGTI 232 + D+ + S + + R L G R S+ C HL +++ I K G Sbjct: 142 ETDVLRIISLEPQP-RNRALLLTLYAGGFRVSELCSLKWCHLQERDSAGQITVFGKGGKT 200 Query: 233 ITVELPD---GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAH 287 TV +P + L + + F + ++ + K A +AG++K S H Sbjct: 201 RTVLMPQSVWEAVMKLRDSDSSEAPVFRSRKNGHLDESAVWRIVKKAAERAGIDKNVSCH 260 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 R A+ + D H + AT G ++ Y Sbjct: 261 WFRHAHASHALDRNCPIHLVQATLGHASISTTGRYLHA 298 >gi|237710114|ref|ZP_04540595.1| transposase [Bacteroides sp. 9_1_42FAA] gi|229455576|gb|EEO61297.1| transposase [Bacteroides sp. 9_1_42FAA] Length = 320 Score = 95.5 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 44/267 (16%), Positives = 90/267 (33%), Gaps = 27/267 (10%) Query: 85 GSLAVNSRISFESYFDQIIR------KSGDFDYRKITTKHIRSGVESRKHTP----SSAI 134 +A + +E+ D +I+ + I K ++A Sbjct: 41 TDMAPATVQRYETSLKHTRDFVWETYHKKDVLLDEISRQFIEDYEFWLKTEKKCCHNTAT 100 Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQ 191 ++L + + + + A+ + ++ +P L + R ++Q+ S SQ Sbjct: 101 KYLKNFKKIIRIALAKGWMKNDPFLEI-RFSLDKVEPDFLEDSEIQKLISKEIDIPRLSQ 159 Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNN-----IFSIKTQKTGTIITVELPDGFMKLLA 246 R F F ++GL SD +H+ + QKT + + L + +K+L Sbjct: 160 VRDIFVFCCFTGLAFSDIHGLRKEHIVEDSNGVRWIRKGRQKTKIMCNIPLMEIPLKILE 219 Query: 247 MTPIGKETFFINNDK---QKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADAG 301 + + + + + + K A G+ K+ H R AT + G Sbjct: 220 KYSTNE---YCKKHGVLFPVLCNQKMNAYLKELADICGIKKTLTTHVGRHTFATFALANG 276 Query: 302 ATAHELMATYGWKTVDQAETYTKGADR 328 + + G V Y + DR Sbjct: 277 VSIESVAKMLGHTNVQMTRHYARVLDR 303 >gi|167552499|ref|ZP_02346252.1| phage integrase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205322867|gb|EDZ10706.1| phage integrase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] Length = 359 Score = 95.5 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 47/287 (16%), Positives = 89/287 (31%), Gaps = 34/287 (11%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--- 126 T+ I Y LA N+ + + K G+ +TT+HI +ES Sbjct: 75 TVSMWIDRYDVLLKRRDLAANTYKIRGNQLATVREKMGEMILADVTTRHIAEFLESWIAE 134 Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 K+T + A++ + + +F+ A+ + + NP P+ K R ++ + + Sbjct: 135 GKNTMAGAMR--SVLSDMFREAIVEGRITTNPVEPTRAPEIKVARERL----QLETYNAT 188 Query: 186 WSEGSQPRLAF----EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241 + F + L +G R D + + + KTG I L Sbjct: 189 RAAAEHMPAWFPLAMDLALVTGQRREDIVNMKFSDIVDGRLHVTQIKTGMKIAFPLSLNL 248 Query: 242 MK--------LLAMTPIGKETFFI------NNDKQKMNATQFSIWFKAKATKAGVNKS-- 285 + + + F I N+ ++ + F +GV S Sbjct: 249 EAPGLRLGTVIDRCRLVSRTDFMISAGIRKNSPTGNIHPDGLTKKFVKARKISGVKFSDN 308 Query: 286 ---AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 H +R A G + + + Y D Sbjct: 309 PPTFHEIR-SLAGRLYKDERGEEFAQKLLGHTSENTTKLYLDERDNK 354 >gi|319899442|ref|YP_004159539.1| integrase/recombinase XerC [Bartonella clarridgeiae 73] gi|319403410|emb|CBI76978.1| integrase/recombinase XerC [Bartonella clarridgeiae 73] Length = 322 Score = 95.5 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 36/262 (13%), Positives = 76/262 (29%), Gaps = 25/262 (9%) Query: 88 AVNSRISFESYFDQIIRKSGDFD----YRKITTKHIRSGVESRK---HTPSSAIQFLTSM 140 A+ + + + G + R+ + R+ S + + S+ Sbjct: 44 AIAYERDTRQFLFFLCQHLGYQPTLNDLANLRVADFRAYLAYRRTQNINARSLSRNMASL 103 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE-------DMQQFKSFWSEGSQPR 193 R F + R++ V + V PK + T E + Q ++ ++ Sbjct: 104 RSFFNYLSREKEVNVPAAKLVRTPKYPKSLPKALTIESALRIVKEENQQENEPWIIARNT 163 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI--KTQKTGTIITVEL----PDGFMKLLAM 247 L G+R S++ + + T K G V + + L Sbjct: 164 AILILLYGCGMRISEALALTPEQFADPSIKSLSVTGKGGKTRLVPMIPIVHEAVENYLKC 223 Query: 248 TP---IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGA 302 P + + F + + + G+ ++ H +R AT G Sbjct: 224 CPYPLLNNQPIFRGVRGKPLQPAIIQRTVQNLRAHLGLPETTTPHALRHSFATHLLSRGG 283 Query: 303 TAHELMATYGWKTVDQAETYTK 324 + G + + YT Sbjct: 284 DLRTIQELLGHACLSTTQVYTH 305 >gi|262202039|ref|YP_003273247.1| integrase family protein [Gordonia bronchialis DSM 43247] gi|262085386|gb|ACY21354.1| integrase family protein [Gordonia bronchialis DSM 43247] Length = 304 Score = 95.5 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 36/272 (13%), Positives = 80/272 (29%), Gaps = 26/272 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKSG-----DFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139 + ++ ++ +I +G D + + R ++ + ++S Sbjct: 23 MGRSPHTVRAYVGDVRGLIAFAGARGVATADIDLTLLRAWLAEHTRRGAARTTIARQVSS 82 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW--------SEGSQ 191 ++ WAVR+ ++ +P + PK + + + Sbjct: 83 VKTFCAWAVREGLMSDDPSHRLRAPKAHRTLPAVLAPAQVPDVIAAAAAERPQGDPIALR 142 Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQ---------NNIFSIKTQKTGTIITVELPDGFM 242 + E L G+R + C V + +T G V L Sbjct: 143 DTVIVEVLYAGGIRVGELCGLDVDDVDRDRRVLRVIGKGDKERTVPYGAPAAVALDAWLR 202 Query: 243 KLLAMTPIGKE--TFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISAD 299 + + +++ +AG HG+R +AT + Sbjct: 203 HGRPALATERSGAALLLGARGGRLDQRMARTVVTRAVEQAGGPAMGPHGLRHSAATHLLE 262 Query: 300 AGATAHELMATYGWKTVDQAETYTK-GADRIR 330 GA + G ++ + YT +R+R Sbjct: 263 GGADLRVVQELLGHSSLATTQIYTHVSVERLR 294 >gi|41023639|emb|CAF18331.1| integrase/recombinase IntI1 [Morganella morganii subsp. morganii] Length = 320 Score = 95.5 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 42/306 (13%), Positives = 93/306 (30%), Gaps = 62/306 (20%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHT 129 ++ + R+ + + + ++ ++ IR G + + + + + RK + Sbjct: 16 VLDQLRERIRYLHYSSRTEQAYVNWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75 Query: 130 PSSAIQFLTSMRVLFK--WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 S+ Q L ++ + ++ + RP+ T +++ + F Sbjct: 76 VSTHRQALAALLFFYGKVLCTDLPWLQ-----EIGRPRPSRRLPVVLTPDEVVRILGFL- 129 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQKTGTIITVELPDGFMKLL 245 EG RL + L +G+R S+ + V+ + ++ K + LP+ L Sbjct: 130 EGEH-RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSL 188 Query: 246 AMTPIGKETFFINN---------------------------------------------D 260 +++ + Sbjct: 189 REQLSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVR 248 Query: 261 KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318 + M F FK +AG+ K + H +R AT +G + G V Sbjct: 249 RHHMYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVST 308 Query: 319 AETYTK 324 YT Sbjct: 309 TMIYTH 314 >gi|260855764|ref|YP_003229655.1| putative integrase [Escherichia coli O26:H11 str. 11368] gi|257754413|dbj|BAI25915.1| putative integrase [Escherichia coli O26:H11 str. 11368] Length = 371 Score = 95.5 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 41/278 (14%), Positives = 86/278 (30%), Gaps = 30/278 (10%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--K 127 T+ I Y+ ++ N+ + + I K G +ITT+HI ++ Sbjct: 75 TMADWIERYKTILIRRKVSRNTYKIRVNQLETIKEKLGGVLLTEITTRHIAEFLDLWIEG 134 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF----K 183 + A + + +F+ A+ + ++ NP PK R ++ + + Sbjct: 135 GKNTMAGSMRSVLSDMFREAIVEGRISQNPVTPTRAPKIVVTRERL----KLKTYNCIRE 190 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243 + + LA + L +G R D + ++ I+ K G +I + L Sbjct: 191 AADQLPTWFPLAMDLALVTGQRREDITNMRFSEIYDDRLHIRQIKKGMMIAIPLSLSLPV 250 Query: 244 LLAMTPI--------GKETFFINNDKQKMN------ATQFSIWFKAKATKAGV-----NK 284 + + I+ +K + + F A G+ Sbjct: 251 AGLRLGTVVEQCRMVSRGDYLISAGIRKNSPDGSIHPDGLTKKFVAARKLTGIQFSENPP 310 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 + H +R A G + + Y Sbjct: 311 TFHEIR-SLAGRLYKETCGEEFAQRLLGHTSEKTTKMY 347 >gi|68262570|emb|CAJ13499.1| integrase/recombinase [Klebsiella pneumoniae] Length = 320 Score = 95.5 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 42/306 (13%), Positives = 94/306 (30%), Gaps = 62/306 (20%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHT 129 ++ + R+ + ++ + ++ ++ IR G + + + + + RK + Sbjct: 16 VLDQLRERIRYLHYSLRTEQAYVNWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75 Query: 130 PSSAIQFLTSMRVLFK--WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 S+ Q L ++ + ++ + RP+ T +++ + F Sbjct: 76 VSTHRQALAALLFFYGKVLCTDLPWLQ-----EIGRPRPSRRLPVVLTPDEVVRILGFL- 129 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQKTGTIITVELPDGFMKLL 245 EG RL + L +G+R S+ + V+ + ++ K + LP+ L Sbjct: 130 EGEH-RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSL 188 Query: 246 AMTPIGKETFFINN---------------------------------------------D 260 +++ + Sbjct: 189 REQLSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVR 248 Query: 261 KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318 + M F FK +AG+ K + H +R AT +G + G V Sbjct: 249 RHHMYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVST 308 Query: 319 AETYTK 324 YT Sbjct: 309 TMIYTH 314 >gi|323126847|gb|ADX24144.1| putative transposon integrase [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 414 Score = 95.5 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 48/327 (14%), Positives = 97/327 (29%), Gaps = 67/327 (20%) Query: 85 GSLAVNSRISFESYFDQIIRK-SGDFDYRKITTKHIRSGV----ESRKHTPSSAIQFLTS 139 L N+ +++ ++ + G+ + + IRS E R ++ T Sbjct: 83 QGLKDNTFKNYQYLYEYFVDDNLGNVLIKNLKKSDIRSFYNYLAEERNVKVNTIDNIHTV 142 Query: 140 MRVLFKWAVRQEYVAINPCLS-VERPKR----KTEGIRPWTKEDMQQFKSFWSEGSQPRL 194 + + AV +Y+ NP + ++ K+ + + T + F+ F ++ + Sbjct: 143 LHQVLDLAVDDDYILKNPSDNALKELKQSRTNGKKSRKALTLAEQNLFEDFLRTNNKYKG 202 Query: 195 A---FEFLLYSGLRCSDSCRAGVQHLQNNI---------------------FSIKTQKTG 230 F +L++GLR + + N F++ T KT Sbjct: 203 WYPIFITMLWTGLRVGEVTGLRWDDIDFNNNTISVNHTLVYYQTRTERGCDFTVNTPKTK 262 Query: 231 T-IITVELPDGFMKLLAMTP-------------IGKET--FFINNDKQKMNATQFSIWFK 274 TV L + L M I T F+N + + K Sbjct: 263 AGERTVPLLPKVKEALKMEKQRQTELEISCRVVINGFTNFIFLNRFGDLYHQGTLNKALK 322 Query: 275 AKATKAGV--------------NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320 N S H +R T +AG + G + Sbjct: 323 RIIRDCNFSVLDGKINSEVTLPNFSNHSLRHTFTTRMVEAGTNLKAMQDILGHSDISTTM 382 Query: 321 -TYTKGADRIRLGIKNSRRISSVVDSD 346 Y + + L + ++++ Sbjct: 383 NIYAEAS--KDLKEIEMENFGNKIENN 407 >gi|319743915|gb|EFV96301.1| integrase [Streptococcus agalactiae ATCC 13813] Length = 362 Score = 95.5 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 48/339 (14%), Positives = 115/339 (33%), Gaps = 34/339 (10%) Query: 11 VTKERTRHGKIIYYFRK----GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66 + + ++G Y FR G++ + S F A ++ I +P+ Sbjct: 3 IESYKKKNGTTAYRFRVYIGVIDGKKKYIKR---SGFTSK-KLAKQALINLQQEIENPKD 58 Query: 67 KPTT-LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125 K T K L + + + + + I+ G + + +T I+ + Sbjct: 59 KSTLLFKDLTKIWLDNYEKTVQGSTYLKTKRNIENHILPSLGSYQIKDLTPLIIQKYADE 118 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP---WTKEDMQQF 182 + + + +R + AV+ +Y+ NP V PK + + + K+++++F Sbjct: 119 WSTKLKYSSKIVGIVRNILNHAVKFQYITSNPSAPVSAPKIQRTINKKKDYYNKDELKEF 178 Query: 183 KSFWSEGSQPRLA--FEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--------------T 226 + F L ++GLR + + +N + T Sbjct: 179 VQLVYNTDDINIIATFRLLAFTGLRKGEMLALTWKDYRNGTLDVNKAITRDIAGEHIGPT 238 Query: 227 QKTGTIITVELPDGFMKLLAMTPI--GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284 + + + L M +L K + + + + + + + + ++K Sbjct: 239 KNKSSDRLISLDPETMNVLDNLHKTYPKTKYILESASGRWISPTQPRRWLVQILRDSISK 298 Query: 285 ----SAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319 HG R A++ ++G T ++ G + + Sbjct: 299 LEPIRIHGFRHTHASLLFESGLTLKQVQHRLGHEDLKTT 337 >gi|255690122|ref|ZP_05413797.1| mobilizable transposon, int protein [Bacteroides finegoldii DSM 17565] gi|260624404|gb|EEX47275.1| mobilizable transposon, int protein [Bacteroides finegoldii DSM 17565] Length = 337 Score = 95.5 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 46/290 (15%), Positives = 96/290 (33%), Gaps = 35/290 (12%) Query: 76 SEYRKSAHWGSLAVNSRISFESYFDQIIRK--------SGDFDYRKITTK---HIRSGVE 124 Y+ A + R + + G + +I R + Sbjct: 53 DRYKLKADFLEY---YRKQLRKHDQKWEFVYLHFRNFVHGKCTFEEIDIDLCNKFREYLL 109 Query: 125 SRKH-------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177 S K T +SA + ++ R K R + N +++ + + + E Sbjct: 110 SAKKLRRNGPITRNSASGYWSTFRGFLKILYRNGMIKTNVNDFLDKIETEDVVKEYLSVE 169 Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL-----QNNIFSIKTQKTGTI 232 ++ + + ++A F + LR SD + + I TQK Sbjct: 170 ELYKLAETPCKKPILKIASLFSCMTSLRISDILALCWEDIVDYSAGGKCVHIITQKNKAE 229 Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290 + + + + L+ + K F + + + K AG+ K + H R Sbjct: 230 DIIPISEEALGLIGYSSEKKGLVF-----KGLMRSWTQAPMKEWIRSAGITKNITFHSYR 284 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340 + AT+ A AG + + K++ + Y K D + + S++I+ Sbjct: 285 RTFATLQAAAGTDIRTIQSIMAHKSITTTQRYIKVVDANKR--EASKKIT 332 >gi|254451033|ref|ZP_05064470.1| site-specific recombinase, phage integrase family protein [Octadecabacter antarcticus 238] gi|198265439|gb|EDY89709.1| site-specific recombinase, phage integrase family protein [Octadecabacter antarcticus 238] Length = 368 Score = 95.5 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 47/322 (14%), Positives = 110/322 (34%), Gaps = 20/322 (6%) Query: 9 PFVTKERTRHGKIIYYFRK---GHGRRIRL-PYPHESTFIPAYMSALTGSTPKREYINSP 64 + + K +YF+K G +RI + +P S + R + Sbjct: 38 KGLVLFVGKRSKT-WYFQKDVGGQTKRILIGRFPIISAQAARQTALGFALEMGRGAGKAA 96 Query: 65 RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124 + TL+ + Y + +++ + ++ +I+ Sbjct: 97 QIGAPTLEAAMEVYLARPKLR--SETNKVGMRAQLTLHLKDWMRLPLDEISKAMTVRRHH 154 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 +PS+A L S R ++ A R + P +++E + K +G + ++ Sbjct: 155 DMAGSPSAANHVLRSFRAIYNHARRTCDLPECPTMAIEWFEDKPDGRIIENLKHWRKTID 214 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244 R+ +E LL++GLR ++ + + + + K G + + ++ Sbjct: 215 DLPNPIH-RVFYELLLFTGLRKTEVFTLKWEQVLEDRIHLPMTKNGRSFDLPISQLHHEI 273 Query: 245 LAMT-PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGAT 303 LA P+ + F ++ + + + H R+ AT++ +AG Sbjct: 274 LAPLRPLSSDWVF------PSPKSETGHITRPVR----LKYNPHMHRRTFATVAMEAGVL 323 Query: 304 AHELMATYGWKTVDQA-ETYTK 324 + + + YT+ Sbjct: 324 EEIVGRLLNHTPLSITGQRYTR 345 >gi|158317270|ref|YP_001509778.1| integrase family protein [Frankia sp. EAN1pec] gi|158112675|gb|ABW14872.1| integrase family protein [Frankia sp. EAN1pec] Length = 477 Score = 95.5 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 48/295 (16%), Positives = 95/295 (32%), Gaps = 37/295 (12%) Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVE 124 + T+ + E+ ++ ++ + I+ G K+T +R V Sbjct: 147 AERRTVAVWLGEWLDIKEGDGTRASTLRAYRWLINMHIVPVIGRVQLDKLTPLDVRRLVA 206 Query: 125 SRKHTPSSA---IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 S K + SA + +R A R + VA N +V+ P +R E+ ++ Sbjct: 207 SAKKSGLSAGSVRHVHSLIRNALAEAERLDLVARNVAKAVKAPPTPHREVRALRPEEARR 266 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT------- 234 G + F L GLR + + + ++ ++T + Sbjct: 267 LVEVL-RGERLEAVFACGLMLGLRRGEILGLRWSDVDLDGATLHVRQTLQRVDGSLMFVP 325 Query: 235 ---------VELPDGFMKLLA---MTPIGKET-----------FFINNDKQKMNATQFSI 271 + +P + +L T + T F ++ + + Sbjct: 326 AKTERSHRRLPIPPKLVTILRRHRATQTAERTGLGDAWTETGLVFTSSIGTPLEPRNVNR 385 Query: 272 WFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTK 324 F +AG+ H +R A++ G A +M G T+ TYT Sbjct: 386 RFDVLRRQAGLPWLRLHDLRHAFASMLFAEGVPARTVMELLGHSTIQLTMNTYTH 440 >gi|171913488|ref|ZP_02928958.1| integrase family protein [Verrucomicrobium spinosum DSM 4136] Length = 358 Score = 95.5 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 43/240 (17%), Positives = 100/240 (41%), Gaps = 12/240 (5%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES-RKHTPSSAIQFLTSMRVL 143 L ++ ++ + +++ + R+IT + + + V++ +K P +AI +L+ + Sbjct: 73 RELTESTLKFRKAAINHLVKFTQATTPRQITPRQVSAWVDALKKQNPETAINYLSVAQSW 132 Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIR-PWTKEDMQQFKSFWSEGSQPRLAFEFLLYS 202 F W + + NP V+ PK+ T+G + E+ ++ + + A L++ Sbjct: 133 FSWLQQGFKINSNPASQVKPPKKPTKGRKQFLRPEEARKLITAATGDRDLTFALYCALHA 192 Query: 203 GLRCSDSCRAGVQHLQNNIFSIKTQKTGTII-------TVELPDGFMKLLAMTPIGKETF 255 GLR + A + + Q T T + T+ L F + L +E F Sbjct: 193 GLRRKEVIEARPSWFDLDAGLLHVQATPTFVPKDKDNRTIPLTKEFREWLRKNYTMQEPF 252 Query: 256 FIN---NDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYG 312 ++ + F ++ +AG++ + H +R+ A++ G + +++ G Sbjct: 253 MLSPERTHGKSPYRYNFGRIYERLLERAGLSANFHDLRRTFASLHVSKGTSVYKVAQWLG 312 >gi|167766929|ref|ZP_02438982.1| hypothetical protein CLOSS21_01446 [Clostridium sp. SS2/1] gi|317499598|ref|ZP_07957861.1| phage integrase [Lachnospiraceae bacterium 5_1_63FAA] gi|167710904|gb|EDS21483.1| hypothetical protein CLOSS21_01446 [Clostridium sp. SS2/1] gi|316893147|gb|EFV15366.1| phage integrase [Lachnospiraceae bacterium 5_1_63FAA] Length = 363 Score = 95.5 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 48/338 (14%), Positives = 104/338 (30%), Gaps = 38/338 (11%) Query: 41 STFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD 100 F + A+ +T R I +LI E + + + +V S D Sbjct: 26 PPFAKEFFRAIDSTTQVRTRIAYAYDLRVFFHFLIDE---NPAYRNYSVLDFKV--SDLD 80 Query: 101 QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160 +I + + + ++T + ++++R + + +++ + NP L Sbjct: 81 KIESVDLEEYMEYLKVYISEEQHKHMQNTEQGVFRKMSALRSFYGYFYKRQLIEKNPTLL 140 Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSEG----------------SQPRLAFEFLLYSGL 204 V+ PK + + I +++ F G + LL +G+ Sbjct: 141 VDMPKIREKEIIRLEADEVASLLDFVEHGGDHLTGQKRAYYEKTKERDLAIITLLLGTGI 200 Query: 205 RCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGK---------- 252 R S+ + + NN + +K +TV + L G Sbjct: 201 RVSELVGLNIDDVDFRNNGLHLI-RKGRKEMTVYFGNEVADALEQYIEGSRKLIIPKEGH 259 Query: 253 -ETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMA 309 + F + ++++ K A + + H +R T + + Sbjct: 260 EDALFYSMQRRRIGVQAVQNLVKKYAKEVTPLKKITPHKLRSTYGTALYQETDDIYLVAE 319 Query: 310 TYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSVVDSD 346 G V+ + Y +D R + V D Sbjct: 320 VLGHSDVNTTRKHYAAMSDTRRRQAAGKVVLRESVSHD 357 >gi|315607470|ref|ZP_07882465.1| mobilizable transposon [Prevotella buccae ATCC 33574] gi|315250653|gb|EFU30647.1| mobilizable transposon [Prevotella buccae ATCC 33574] Length = 418 Score = 95.5 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 34/208 (16%), Positives = 70/208 (33%), Gaps = 10/208 (4%) Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 + ++A + + + K A Y+ I+ ++ + + T +++ + + E Sbjct: 199 SRNTASTYFSIFKAALKQAFIDGYLTIDLSAKIKGIQEQESRREYLTLDELNKLANTPCE 258 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI----FSIKTQKTGTIITVELPDGFMKL 244 + A F +GLR D + + +KT + + + + KL Sbjct: 259 RDVLKRAALFSALTGLRHCDIQKLKWNEIAIEGNQAKLLFTQKKTKGVEYMPISEQAFKL 318 Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302 ++ F + +A KAG+ K S H R AT+ G Sbjct: 319 CGEPRQPEQLVFEGLPNPSWISRPL----RAWIEKAGIQKHLSFHCFRHTFATLQLANGT 374 Query: 303 TAHELMATYGWKTVDQAETYTKGADRIR 330 + + G V + Y K D + Sbjct: 375 DIYTVSKMLGHTNVKTTQVYAKVVDEKK 402 >gi|309810355|ref|ZP_07704190.1| tyrosine recombinase XerD [Dermacoccus sp. Ellin185] gi|308435668|gb|EFP59465.1| tyrosine recombinase XerD [Dermacoccus sp. Ellin185] Length = 311 Score = 95.5 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 46/269 (17%), Positives = 88/269 (32%), Gaps = 31/269 (11%) Query: 85 GSLAVNSRISFESYFDQII---RKSGDFDYRKITTKHIRSGVESRKHT--------PSSA 133 L+ ++ ++ + + SG + + + + S + SSA Sbjct: 25 RGLSPHTLAAYRRDVTRYLGYLAASGVTSLDGVEESRVEAFLRSLREGGQGHPPLAASSA 84 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG---- 189 + L ++R L + V E A + V P+ + + D+++ + +G Sbjct: 85 ARALVAVRRLHAF-VSLETDAPDAATDVAPPRLPRKLPKAIPLADVERLLAAAGDGEDAG 143 Query: 190 -SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLL-- 245 + R E L G R S+ V + S++ K V L L Sbjct: 144 SLRDRALLEVLYGVGARVSEVVGLDVDDVDLMSRSLRLFGKGSKERIVPLGRYAADALGS 203 Query: 246 ---------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSA 294 A F+N +++ + A AG++ S H +R A Sbjct: 204 YLTRERPALAAKGKAGAAVFLNQRGGRLSRQSVFGLVRRAAEVAGLDGEISPHTLRHSYA 263 Query: 295 TISADAGATAHELMATYGWKTVDQAETYT 323 T + GA + G +V + YT Sbjct: 264 THLLEGGADVRVVQELLGHASVTTTQIYT 292 >gi|298529884|ref|ZP_07017286.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1] gi|298531276|ref|ZP_07018676.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1] gi|298508886|gb|EFI32792.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1] gi|298509258|gb|EFI33162.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1] Length = 394 Score = 95.5 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 35/236 (14%), Positives = 81/236 (34%), Gaps = 20/236 (8%) Query: 109 FDYRKITTKHIRSGVESR--KHTPSSAIQFLTSMRVLFKWA-VRQEYVAINPCLSVERP- 164 + + + H+ + + R K+ P + I + +R ++ + ++ + + ++ P Sbjct: 144 MELKDLDVLHMDAFLAERNRKYAPETRIHERSGLRGFLRYLYLERQILKKDLSALIQGPP 203 Query: 165 -KRKTEGIRPWTKEDMQQFK----SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL-- 217 ++ R T E ++ G + GLR + CR + + Sbjct: 204 VYAQSRPPRFLTLEQIKTLFQSIDKDRPGGLRSYAMIHLAYSLGLRPGEICRVTLDDILF 263 Query: 218 QNNIFSIKTQKTGTIITVELPDGFMK-------LLAMTPIGKETFFINNDK--QKMNATQ 268 ++ + + +K + + LP G ++ G N + Sbjct: 264 RDKLIYLPDRKNSSPAKLPLPQGALRALAAYLAWDRPMDPGHRFLLCNTRTPYGPLTPLT 323 Query: 269 FSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 S A +AG+ SA+ +R A A A+ E+ G + ++ Y Sbjct: 324 VSQNISACFRRAGIKGSAYWLRHTYAQNLLQAEASIFEIKEMLGHDIIKTSKRYLH 379 >gi|330970858|gb|EGH70924.1| site-specific recombinase, phage integrase family protein [Pseudomonas syringae pv. aceris str. M302273PT] Length = 351 Score = 95.5 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 48/289 (16%), Positives = 101/289 (34%), Gaps = 26/289 (8%) Query: 60 YINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119 YI + TL+ ++ Y S + + ++ S ++I G + ++ + I Sbjct: 50 YIQRNGSERMTLEVALARYL-SDITPTKKLATQRGEISKDKKLIEHLGKYSLAALSAEII 108 Query: 120 RSGVESRKHTPSSAIQF--------LTSMRVLFKWAVRQEY---VAINPCLSVERPKRKT 168 + + R + P L + L+ A+ QE+ + NP L++ +P Sbjct: 109 ANYRDKRLNEPGRDGNINNNTVRLELALLSHLYTVAI-QEWGLGMTFNPMLNIRKPSPGG 167 Query: 169 EGIRPWTKEDMQQFKSFWSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQN--NIFSI 224 R + E+ + + + S P L L +G+R S+ + + + Sbjct: 168 GRDRRLSPEEERDLLAAVNRHSNPMLGWIVRIALETGMRSSEISSLRRPQVDLAKRVIRL 227 Query: 225 KTQKTGTIITVELPDGFMKLLAMT------PIGKETFFINNDKQ--KMNATQFSIWFKAK 276 K + TV L + PI F + K F+ + Sbjct: 228 SDTKNDSSRTVPLSKRATEAFQAAMNNPVRPIDCNLVFFGESGKDGKRRPYTFTKIWGQL 287 Query: 277 ATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 K + + H +R + + + G + E+ A G +++ + YT Sbjct: 288 KKKLDLPDFKFHDLRHEAVSRLVEGGLSDQEVSAISGHRSMQMLKRYTH 336 >gi|323153903|gb|EFZ40133.1| phage integrase family protein [Escherichia coli EPECa14] Length = 431 Score = 95.5 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 46/317 (14%), Positives = 99/317 (31%), Gaps = 64/317 (20%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK-ITTKHIRSGVESR-- 126 T+K L ++ +A S ++ + I+ G+ + I + + + + Sbjct: 85 TIKELAEKFLALKE-TEVAKTSLNTYRAVIKNILSIIGEKNLASSINKEKLLAVRKELLT 143 Query: 127 --------------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172 + + ++T++ +F++ V Y+A NP + K Sbjct: 144 GYQIPKSNYIVTQPGRSAVTVNNYMTNLYAVFQFGVDNGYLADNPFKGISPLKESRTIPD 203 Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIK----- 225 P ++E+ + Q + + +Y+G+R + C G + + N I+ Sbjct: 204 PLSREEFIRLIDAC-RNQQAKNLWCVSVYTGIRPGELCALGWEDIDLKNGTMIIRRNLAK 262 Query: 226 --------TQKTGTIITV--ELPDGFMKLLAMTPIGKETFF------------------- 256 T +I + D +A+T + KE Sbjct: 263 DRFTVPKTQAGTNRVIHLIKPAIDALRSQMALTRLSKEHIIDVHLREFGRTEKQKCTFVF 322 Query: 257 -------INNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELM 308 + N + A +AG+ ++ ++ R A S AGA + Sbjct: 323 QPEVSAKVKNYGDHFTVDSIRQMWDAAVKRAGIRHRKSYQSRHTYACWSLTAGANPAFIA 382 Query: 309 ATYGWKTVDQA-ETYTK 324 G + Y K Sbjct: 383 NQMGHADAQMVFQVYGK 399 >gi|317473155|ref|ZP_07932453.1| phage integrase [Anaerostipes sp. 3_2_56FAA] gi|316899379|gb|EFV21395.1| phage integrase [Anaerostipes sp. 3_2_56FAA] Length = 297 Score = 95.5 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 47/277 (16%), Positives = 87/277 (31%), Gaps = 31/277 (11%) Query: 78 YRKSAHWGSL-----AVNSRISFESYFDQIIRKSGDFDYRKITT---KHIRSGVESRKHT 129 Y S W SL A ++ S+ I +I + + S+ Sbjct: 5 YDVSMKWFSLHELEIAESTAYSYSKNLRFINEYFHGKSIYEIDKNDIQDYVKFLYSKGCK 64 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAI--NPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + + + + F +AV E + NPC + PK + + I P+++ +M++ Sbjct: 65 TDTITNYFKLINMTFNYAVDYEILPKGANPCYKIVIPKTEKQEINPFSETEMEKILKVKC 124 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-----------------G 230 F +G+R + + + N IK QKT Sbjct: 125 LPWLYAGEF-IAYRTGMRKGEIYALRKKDIDFNGGFIKVQKTQSLTKNAKVILKEPKSKS 183 Query: 231 TIITVELPDGFMKLLAMTPIGKETFFIN-NDKQKMNATQFSIWFKAKATKAGVNK-SAHG 288 + + M L E+ F+ N+ S F A V + + H Sbjct: 184 SRRRIACDKILMNFLWNLSNRSESVFLFPNNDTFFVPWNISSAFTDVCEMAKVPRRTFHE 243 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324 +R AT+ + G ++ TY+ Sbjct: 244 LRHTHATVLLSHNVHPKVVQERLGHASIQTTLNTYSH 280 >gi|298245891|ref|ZP_06969697.1| integrase family protein [Ktedonobacter racemifer DSM 44963] gi|297553372|gb|EFH87237.1| integrase family protein [Ktedonobacter racemifer DSM 44963] Length = 384 Score = 95.5 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 45/315 (14%), Positives = 96/315 (30%), Gaps = 39/315 (12%) Query: 48 MSALTGSTPKREYINSPRKKPTT---LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR 104 A+ + T L + ++ ++ H G L V + ++++ +I Sbjct: 43 QEAIKKKNEALRELEMGILATGTRRRLGEYLEDWLENVHKGRLRVGTYVNYKKLIKYVIA 102 Query: 105 KSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV 161 GD +K+T +H+++ + + + V + AVR N C V Sbjct: 103 DLGDIWLQKLTPQHVQTFYSKKLNEGLSSKLINNIHGVLHVALENAVRWGLAPKNVCDLV 162 Query: 162 ERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI 221 P+ + + P + E + F + L + +G+R + + Sbjct: 163 TPPRIVSREVVPLSVEQARWFVDRVKKHRLEVL-LVTAVVTGMRRGELLALRWPDIDFER 221 Query: 222 FSIK----------------TQKT-GTIITVELPDGFMKLLAMTPI-------------G 251 + KT + LP + +L Sbjct: 222 SRLLVLHSVDFIAGHGYVEGQPKTVAGRRVISLPSFLVDMLKQHRTLQQDARKSAKDWQD 281 Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMAT 310 ++ F N ++ F+ +AG+ H +R +A+I G + Sbjct: 282 RDLVFPNLKGGYLHPAHMGEKFRKILAEAGLPPIHFHDLRHSAASILLCMGVNIKVIQEL 341 Query: 311 YGWKTVDQA-ETYTK 324 G + TY+ Sbjct: 342 LGHSDISITLRTYSH 356 >gi|218680623|ref|ZP_03528520.1| site-specific tyrosine recombinase XerD [Rhizobium etli CIAT 894] Length = 311 Score = 95.5 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 46/274 (16%), Positives = 83/274 (30%), Gaps = 34/274 (12%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTK-----HIRSGVESRKHTPSSAIQFLTS 139 A N+ S+E D + + R + + + PSS + L + Sbjct: 20 RGAAANTLQSYERDLDDVSAFLKERGIRLTEAASADLAAYLASLARKGFKPSSQARRLAA 79 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEF- 198 MR +K+ + +P ++ PK+ + E++ + S +Q + Sbjct: 80 MRQFYKFLYAEGLRTDDPTGILDAPKKGRPLPKTMGVEEVGKLLSQAETEAQDAAPGQLQ 139 Query: 199 ----------LLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLLA- 246 L +G+R S+ + L F + K V L + L Sbjct: 140 RLRMLALLELLYATGMRVSELVSLPARVLDQEGRFLMIRGKGNKERLVPLSQSAISALKS 199 Query: 247 ------------MTPIGKETFFINNDKQKM-NATQFSIWFKAKATKAGVN---KSAHGVR 290 P F K+ F+ K A +AG+ S H +R Sbjct: 200 YGRLLAAENAAVKDPQESPWLFPAASKEGYLPRQVFARDLKNLAIRAGLTPSMISPHVMR 259 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTK 324 A+ GA + G + + YT Sbjct: 260 HAFASHLLANGADLRVVQELLGHSDISTTQIYTH 293 >gi|218689499|ref|YP_002397711.1| putative defective integrase; Qin prophage [Escherichia coli ED1a] gi|218427063|emb|CAR07940.2| putative defective integrase; Qin prophage [Escherichia coli ED1a] Length = 431 Score = 95.5 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 46/317 (14%), Positives = 99/317 (31%), Gaps = 64/317 (20%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK-ITTKHIRSGVESR-- 126 T+K L ++ +A S ++ + I+ G+ + I + + + + Sbjct: 85 TIKELAEKFLALKE-TEVAKTSLNTYRAVIKNILSIIGEKNLASSINKEKLLAVRKELLT 143 Query: 127 --------------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172 + + ++T++ +F++ V Y+A NP + K Sbjct: 144 GYQIPKSNYIVTQPGRSAVTVNNYMTNLYAVFQFGVDNGYLADNPFKGISPLKESRTIPD 203 Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIK----- 225 P ++E+ + Q + + +Y+G+R + C G + + N I+ Sbjct: 204 PLSREEFIRLIDAC-RNQQAKNLWCVSVYTGIRPGELCALGWEDIDLKNGTMIIRRNLAK 262 Query: 226 --------TQKTGTIITV--ELPDGFMKLLAMTPIGKETFF------------------- 256 T +I + D +A+T + KE Sbjct: 263 DRFTVPKTQAGTNRVIHLIKPAIDALRSQMALTRLSKEHIIDVHLREFGRTEKQKCTFVF 322 Query: 257 -------INNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELM 308 + N + A +AG+ ++ ++ R A S AGA + Sbjct: 323 QPEVSAKVKNYGDHFTVDSIRQMWDAAVKRAGIRHRKSYQSRHTYACWSLTAGANPAFIA 382 Query: 309 ATYGWKTVDQA-ETYTK 324 G + Y K Sbjct: 383 NQMGHADAQMVFQVYGK 399 >gi|186471842|ref|YP_001863160.1| integrase family protein [Burkholderia phymatum STM815] gi|184198151|gb|ACC76114.1| integrase family protein [Burkholderia phymatum STM815] Length = 347 Score = 95.5 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 50/302 (16%), Positives = 99/302 (32%), Gaps = 25/302 (8%) Query: 42 TFIPAYMSALTGSTPKREYINSPRKKP-TTLKWLISEYRKSAHWGSL-------AVNSRI 93 + A+ I P TT++ LI+ Y + + + + Sbjct: 35 EEADQWAIAIETRIAGGAAIEGGDITPRTTVRDLIARYMREVSTTKKGSYAERNRLGTLL 94 Query: 94 SFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYV 153 S FD+ I + D + +R + + + I+ L + +F+ A+++ Sbjct: 95 DRYSVFDKTIVEFSSTDIEAVRDARMRGSKDHAPVSALTVIRDLGCLSGVFRHAIKKWKA 154 Query: 154 --AINPCLSVERPKRKTEGIRPWTKEDMQQFK--SFWSEGSQPRLAFEFLLY-------S 202 +NPC V+RP+ +DM++ S + G+ P A +++ + + Sbjct: 155 PFTVNPCKEVDRPRAPRGRSVRVRDDDMRKLLDWSGYVPGADPANARQWMAWSVLFALET 214 Query: 203 GLRCSDSCRAGVQHLQNNI--FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINND 260 +R + R + + K V L + LL GK + Sbjct: 215 AMRRGEFMRMRWTDINRGERGVHLPDTKNDEARDVPLTKKALALLDSLTEGKP----EDR 270 Query: 261 KQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320 + F F G+N H R + T A L + G + + + Sbjct: 271 VIGITYHTFGNAFYKCQKATGINVRIHDCRHEATTNLAKRVKDPLWLASITGHRDLRSLK 330 Query: 321 TY 322 Y Sbjct: 331 IY 332 >gi|323344390|ref|ZP_08084615.1| mobilizable transposon [Prevotella oralis ATCC 33269] gi|323094517|gb|EFZ37093.1| mobilizable transposon [Prevotella oralis ATCC 33269] Length = 418 Score = 95.5 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 34/208 (16%), Positives = 70/208 (33%), Gaps = 10/208 (4%) Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 + ++A + + + K A Y+ I+ ++ + + T +++ + + E Sbjct: 199 SRNTASTYFSIFKAALKQAFIDGYLTIDLSAKIKGIQEQESRREYLTLDELNKLANTPCE 258 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI----FSIKTQKTGTIITVELPDGFMKL 244 + A F +GLR D + + +KT + + + + KL Sbjct: 259 RDVLKRAALFSALTGLRHCDIQKLKWNEIAIEGNQAKLLFTQKKTKGVEYMPISEQAFKL 318 Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302 ++ F + +A KAG+ K S H R AT+ G Sbjct: 319 CGEPRQPEQLVFEGLPNPSWISRPL----RAWIEKAGIQKHLSFHCFRHTFATLQLANGT 374 Query: 303 TAHELMATYGWKTVDQAETYTKGADRIR 330 + + G V + Y K D + Sbjct: 375 DIYTVSKMLGHTNVKTTQVYAKVVDEKK 402 >gi|254431901|ref|ZP_05045604.1| integron integrase [Cyanobium sp. PCC 7001] gi|197626354|gb|EDY38913.1| integron integrase [Cyanobium sp. PCC 7001] Length = 325 Score = 95.5 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 53/315 (16%), Positives = 99/315 (31%), Gaps = 59/315 (18%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK---- 127 LI YR+ A + ++E + + +R R++ + + S + Sbjct: 10 AGLIQRYREELQTRHYARRTVKTYELWLRRFLRFHNLRHPREMGSAEVNSFLTHLAVDLQ 69 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 +PS+ Q L ++ L++ + ++ V R + + ++ +++ + Sbjct: 70 VSPSTQNQALAALLFLYRELLDRDLELD----GVVRARNRRRLPVVLSEAEVRAVRDHLE 125 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLL 245 P L L SGLR ++ R V+ L S++ K G LP + L Sbjct: 126 --GDPALVVGLLYGSGLRLMEALRLRVKDLDFERRELSVRDGKGGKDRLTLLPQSLVADL 183 Query: 246 AMTPIGKETFFI---------------------------------------------NND 260 +G Sbjct: 184 KHHLLGVRRLHRLDLAAGWGQVLMPHALARKYPNAAREWAWQWVFPQEHRWHDRTSGTQG 243 Query: 261 KQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQ 318 + ++ + K T AGV+K+A H R AT + G + G K V Sbjct: 244 RHHLDPSLVQKAVKRAVTAAGVSKAASCHTFRHSFATHLLERGQDIRTIQELLGHKDVST 303 Query: 319 AETYTKGADRIRLGI 333 YT +R LG+ Sbjct: 304 TMIYTHVLNRGPLGV 318 >gi|126698818|ref|YP_001087715.1| putative tyrosine recombinase [Clostridium difficile 630] gi|254974757|ref|ZP_05271229.1| putative tyrosine recombinase [Clostridium difficile QCD-66c26] gi|255092146|ref|ZP_05321624.1| putative tyrosine recombinase [Clostridium difficile CIP 107932] gi|255306126|ref|ZP_05350298.1| putative tyrosine recombinase [Clostridium difficile ATCC 43255] gi|255313883|ref|ZP_05355466.1| putative tyrosine recombinase [Clostridium difficile QCD-76w55] gi|255516564|ref|ZP_05384240.1| putative tyrosine recombinase [Clostridium difficile QCD-97b34] gi|255649664|ref|ZP_05396566.1| putative tyrosine recombinase [Clostridium difficile QCD-37x79] gi|260682828|ref|YP_003214113.1| putative tyrosine recombinase [Clostridium difficile CD196] gi|260686426|ref|YP_003217559.1| putative tyrosine recombinase [Clostridium difficile R20291] gi|115250255|emb|CAJ68076.1| putative phage integrase site-specific recombinase XerD-like [Clostridium difficile] gi|260208991|emb|CBA62057.1| putative tyrosine recombinase [Clostridium difficile CD196] gi|260212442|emb|CBE03323.1| putative tyrosine recombinase [Clostridium difficile R20291] Length = 304 Score = 95.5 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 43/265 (16%), Positives = 100/265 (37%), Gaps = 21/265 (7%) Query: 85 GSLAVNSRISF----ESYFDQIIRKSGDF-DYRKITTKHIRSGVESRKHTPSSAIQFLTS 139 L+ N+ S+ + Y + I +KS D + +E + ++ + ++S Sbjct: 15 KKLSENTVASYFMDIKKYMEYINQKSIKLVDIVENDIISYLIKLEKDNVSIATIARMISS 74 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLA 195 ++ + NP +++PK K E I T+E++++ +F + + + Sbjct: 75 IKSFHDYLFLNHICTNNPAKDIKKPKIKKENINILTEEEIERLLNFPKLTTPKLIRDKAI 134 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ---KTGTIIT------VELPDGFMKLLA 246 FE L +G++ S+ ++ + +I I K +I + L + Sbjct: 135 FEVLYGTGIKVSELVEMNIEDIDLDIDYIYCNSCCKNQRVIPLCDITKLYLEKYLKEARP 194 Query: 247 MTPIGKE-TFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHG--VRKFSATISADAGAT 303 + E + F+++ Q+ K + A ++K+ + +R A + GA Sbjct: 195 KMAVEGEKSLFVSSLGQRFTRQGLWKVIKKYSNLANIDKNINPTMLRHSFAIHLLNEGAN 254 Query: 304 AHELMATYGWKTVDQAETYTKGADR 328 + G + + Y D+ Sbjct: 255 IAVVSKILGNVNLSSLQVYLNHIDK 279 >gi|114769433|ref|ZP_01447059.1| tyrosine recombinase [alpha proteobacterium HTCC2255] gi|114550350|gb|EAU53231.1| tyrosine recombinase [alpha proteobacterium HTCC2255] Length = 305 Score = 95.5 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 47/289 (16%), Positives = 90/289 (31%), Gaps = 29/289 (10%) Query: 73 WLISEYRKS-AHWGSLAVNSRISFESYFDQII----RKSGDFD----YRKITTKHIRSGV 123 L+ + S + G A + ++ I + +G K++ K +RS + Sbjct: 9 DLMENWLSSLSAVGGRAEKTIDAYRHDVSHFIHFLSQHNGKMPSKAILSKVSVKDMRSWI 68 Query: 124 ESRKHT---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 + + P S + L++++ ++W + V+ LS PK + RP K D + Sbjct: 69 SHARRSGLSPRSLARALSAIKSFYRWMGQTYGVSTTAVLSTRTPKFEKPLPRPVKKSDAK 128 Query: 181 QFKSFWS-------EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII 233 ++ L GLR S++ K Sbjct: 129 DLIKQIDLQSEHEWINARNVAVITLLYGCGLRISEALSITFDKTPLPEVLKIIGKGNKER 188 Query: 234 TVELPDGFMKL----LAMTPIG---KETFFINNDKQKMNATQFSIWFKAKATKAGVN--K 284 V + L P + F +N + + G+ Sbjct: 189 IVPILPVAKAAVKNYLKCCPYSFLPNDRLFKGARGGPLNQRLIRKVMEQTRIQLGLPSTA 248 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 + H +R AT +AG + G ++ + YT D+ RL Sbjct: 249 TPHSMRHSFATHLLEAGGDLRVIQELLGHASLSSTQAYT-AVDQTRLMD 296 >gi|281426208|ref|ZP_06257121.1| mobilizable transposon, int protein [Prevotella oris F0302] gi|281399784|gb|EFB30615.1| mobilizable transposon, int protein [Prevotella oris F0302] Length = 418 Score = 95.1 bits (235), Expect = 1e-17, Method: Composition-based stats. Identities = 34/208 (16%), Positives = 70/208 (33%), Gaps = 10/208 (4%) Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 + ++A + + + K A Y+ I+ ++ + + T +++ + + E Sbjct: 199 SRNTASTYFSIFKAALKQAFIDGYLTIDLSAKIKGIQEQESRREYLTLDELNKLANTPCE 258 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI----FSIKTQKTGTIITVELPDGFMKL 244 + A F +GLR D + + +KT + + + + KL Sbjct: 259 RDVLKRAALFSALTGLRHCDIQKLKWNEIAIEGNQAKLLFTQKKTKGVEYMPISEQAFKL 318 Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302 ++ F + +A KAG+ K S H R AT+ G Sbjct: 319 CGEPRQPEQLVFEGLPNPSWISRPL----RAWIEKAGIQKHLSFHCFRHTFATLQLANGT 374 Query: 303 TAHELMATYGWKTVDQAETYTKGADRIR 330 + + G V + Y K D + Sbjct: 375 DIYTVSKMLGHTNVKTTQVYAKVVDEKK 402 >gi|265763422|ref|ZP_06091990.1| integrase [Bacteroides sp. 2_1_16] gi|263256030|gb|EEZ27376.1| integrase [Bacteroides sp. 2_1_16] Length = 372 Score = 95.1 bits (235), Expect = 1e-17, Method: Composition-based stats. Identities = 41/232 (17%), Positives = 83/232 (35%), Gaps = 12/232 (5%) Query: 111 YRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170 +R+ + R + +SA+ + ++ R K R + + N +E+ + + Sbjct: 138 FREYLLNAKQLRRPERPISRNSAVGYWSTFRGFLKILYRNKLIHSNVNDFLEKIEPEDVV 197 Query: 171 IRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL-----QNNIFSIK 225 + +++ + + + A F + LR SD + + Sbjct: 198 KDYLSVDELYRLAETPCKIPVLKTASLFSCLTSLRISDILTLRWEEIVDFAAGGKCVHTV 257 Query: 226 TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284 TQKT T + + D ++L+ +P F K+ K AG+ K Sbjct: 258 TQKTKTEDIIPISDEALQLIGYSPEKTGLVF-KGLKRCWTQYP----MKEWIRAAGITKN 312 Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335 + H R+ AT+ A AG + + K++ + Y K D + N Sbjct: 313 ITFHSYRRTFATLQAAAGTDIRTIQSIMAHKSITTTQRYMKVVDSNKRKASN 364 >gi|45766|emb|CAA33849.1| unnamed protein product [Plasmid R1033] gi|530804|gb|AAB59999.1| IntI1 integrase [Pseudomonas aeruginosa] Length = 337 Score = 95.1 bits (235), Expect = 1e-17, Method: Composition-based stats. Identities = 42/306 (13%), Positives = 94/306 (30%), Gaps = 62/306 (20%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHT 129 ++ + R+ + ++ + ++ ++ IR G + + + + + RK + Sbjct: 16 VLDQLRERIRYLHYSLRTEQAYVNWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75 Query: 130 PSSAIQFLTSMRVLFK--WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 S+ Q L ++ + ++ + RP+ T +++ + F Sbjct: 76 VSTHRQALAALLFFYGKVLCTDLPWLQ-----EIGRPRPSRRLPVVLTPDEVVRILGFL- 129 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQKTGTIITVELPDGFMKLL 245 EG RL + L +G+R S+ + V+ + ++ K + LP+ L Sbjct: 130 EGEH-RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPTL 188 Query: 246 AMTPIGKETFFINN---------------------------------------------D 260 +++ + Sbjct: 189 REQLSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVR 248 Query: 261 KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318 + M F FK +AG+ K + H +R AT +G + G V Sbjct: 249 RHHMYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVST 308 Query: 319 AETYTK 324 YT Sbjct: 309 TMIYTH 314 >gi|302345835|ref|YP_003814188.1| site-specific recombinase, phage integrase family [Prevotella melaninogenica ATCC 25845] gi|302149177|gb|ADK95439.1| site-specific recombinase, phage integrase family [Prevotella melaninogenica ATCC 25845] Length = 330 Score = 95.1 bits (235), Expect = 1e-17, Method: Composition-based stats. Identities = 39/262 (14%), Positives = 91/262 (34%), Gaps = 15/262 (5%) Query: 91 SRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE----SRKHTPSSAIQFLTSMRVLFKW 146 + + S +Q+ +K TT+ IR+ + K + + F W Sbjct: 72 TIKYYGSTINQLFKKMPKK-VTNYTTEDIRAYLAVFQRKHKSSKVTIDNIRRIFSSFFSW 130 Query: 147 AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRC 206 ++Y+ +P + + K T+ T E+++Q + + + + L +G+R Sbjct: 131 LEDEDYIIKSPVRRIHKVKTGTQIKEVLTDENLEQLRDNCTR-VRDLAMIDLLASTGMRV 189 Query: 207 SDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDG----FMKLLAMTPIGKETFFINNDK 261 + + + + N I K V + LA + F++ K Sbjct: 190 GELVKLNREDINFNERECIVFGKGNKERIVYFNARAKIHLQQYLAERKDRNKALFVSLAK 249 Query: 262 QK--MNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318 + + + + + + H R+ AT++ D G ++ G +D Sbjct: 250 PHNRLQISGVETRLRKIGRLSKIVRVHPHKFRRTLATMAIDKGMPVEQVQKLLGHVKIDT 309 Query: 319 AETYTKGADRIRLGIKNSRRIS 340 Y ++ + + + + IS Sbjct: 310 TMHYA-MVNQTNVKLSHRKFIS 330 >gi|302387141|ref|YP_003822963.1| integrase family protein [Clostridium saccharolyticum WM1] gi|302197769|gb|ADL05340.1| integrase family protein [Clostridium saccharolyticum WM1] Length = 339 Score = 95.1 bits (235), Expect = 1e-17, Method: Composition-based stats. Identities = 57/323 (17%), Positives = 104/323 (32%), Gaps = 45/323 (13%) Query: 67 KPTTLKWLISEYRKS--AHWGSLAVNSRISF---ESYFDQIIRKSGDFDYRKITTKHIRS 121 KPT L++EY S +++ N+ S+ + R + KI+ K I + Sbjct: 2 KPTDFSKLLTEYLTSYLPSLKNVSKNTISSYCDTFRLLLKYCRDVHNLSIEKISMKDIDA 61 Query: 122 GV---------ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINP-----CLSVERPKRK 167 + E R S+ Q L ++R F++ Q N L++ K+ Sbjct: 62 DLVSQFMLWLEEERHCGISTRNQRLMAIRSFFRYV--QGEQPQNLLNCQKVLNIPPKKKS 119 Query: 168 TEGIRPWTKEDMQQFKSF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS 223 + T E+M+ + EG + L +G R + V++++ + Sbjct: 120 LPVVTYLTVEEMKLLLAQPNTSTPEGRRDLALLCILYDTGGRVQEIADLTVRNIRLENPA 179 Query: 224 IK--TQKTGTIITVELPDGFMKLLA---------MTPIGKETFFINNDKQKMNATQFSIW 272 T K V L ++LL F N K+ + S Sbjct: 180 KVHLTGKGRKSREVPLLPRTVQLLERYMIEHRLLAPEKQDHPLFCNRHNSKLTRSGISYI 239 Query: 273 FKAKATKAG-------VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 A A + S H +R A AG + G +VD + Y Sbjct: 240 LNKYAELASSQSLTFPESISPHVLRHTKAMHLLQAGVNIIYIRDILGHASVDTTQIYASA 299 Query: 326 ADRIRLGIKNSRRISSVVDSDDP 348 +++ ++ + P Sbjct: 300 NTQMKRA--ALEKLGDSPAPEFP 320 >gi|294636124|ref|ZP_06714548.1| site-specific recombinase, phage integrase family [Edwardsiella tarda ATCC 23685] gi|291090569|gb|EFE23130.1| site-specific recombinase, phage integrase family [Edwardsiella tarda ATCC 23685] Length = 238 Score = 95.1 bits (235), Expect = 1e-17, Method: Composition-based stats. Identities = 49/228 (21%), Positives = 83/228 (36%), Gaps = 17/228 (7%) Query: 109 FDYRKITTKHIRSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166 ITTK+I + K ++A + + +FK A+ Y+ +NP + PK Sbjct: 1 MPLTAITTKNIADILNEYVNKQKSATAKMIRSELNDIFKEAIAAGYLTLNPVTNTRTPKC 60 Query: 167 KTEGIRPWTKEDMQQFKSFWSEGSQP--RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI 224 K R + D + + E + L +G R D C + + Sbjct: 61 KVHRSR-LSIGDYMKILAKADEITPTWFSAMLRVALITGQRQGDLCTVSWEDVTKTHIRF 119 Query: 225 KTQKTGTIITVELPD---GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281 +KTG I + L G A+ P GK + F+++ K + F+ A Sbjct: 120 TQEKTGAKIAIPLSLTMVGMQLADALPPHGKGSIFVSSTKSAPSPRTVRYQFQRARDAAN 179 Query: 282 VNK------SAHGVRKFSATISA-DAGATAHELMATYGWKTVDQAETY 322 + S H +R SA + A + GA G K++ + Y Sbjct: 180 IEWGDKTPPSFHEIRSLSARLYAKERGADFA--KRLLGHKSMSTTDKY 225 >gi|86130954|ref|ZP_01049553.1| phage integrase family protein [Dokdonia donghaensis MED134] gi|85818365|gb|EAQ39525.1| phage integrase family protein [Dokdonia donghaensis MED134] Length = 357 Score = 95.1 bits (235), Expect = 1e-17, Method: Composition-based stats. Identities = 41/267 (15%), Positives = 91/267 (34%), Gaps = 22/267 (8%) Query: 83 HWGSLAVNSRISF--------ESYFDQIIRKSGDFDYR--KITTKHIRSGVESRKHTPS- 131 ++ + + + ++ +G+ + IT ++ + H Sbjct: 83 NFFDFSEIYLKEYLKKDGRMIYAAVEKFREFTGNDKLKIIDITPDLMQRFYDFLIHKAGL 142 Query: 132 ---SAIQFLTSMRVLFKWAVRQEYVAINPCLSVE---RPKRKTEGIRPWTKEDMQQFKSF 185 + ++T + L K A + + P + K T ++++ + Sbjct: 143 SGETPHNYITRFKKLLKSAKNKGIIKEVPTADIRFSNPNKGDTLSKEVLDIDEIKVLYNT 202 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245 + + AF F Y+GL ++ + H++ N I+ KT + I EL + LL Sbjct: 203 YCGNDVVKRAFIFCCYTGLGLAEIRKLKWGHIKKNRLVIQRSKTDSKIDNELSKQTLSLL 262 Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGAT 303 + F D + ++ T + K +A + K + + R A + GA Sbjct: 263 GKRKLNDNLVF---DLKGISDTAVNKNLKNWLRRADIEKKITFYCARHSFAVLLLLNGAN 319 Query: 304 AHELMATYGWKTVDQAETYTKGADRIR 330 + G + Y DR++ Sbjct: 320 LKSVADAMGHSSTKTTLKYLNHVDRLK 346 >gi|238924762|ref|YP_002938278.1| site-specific recombinase, phage integrase family [Eubacterium rectale ATCC 33656] gi|238876437|gb|ACR76144.1| site-specific recombinase, phage integrase family [Eubacterium rectale ATCC 33656] Length = 336 Score = 95.1 bits (235), Expect = 1e-17, Method: Composition-based stats. Identities = 38/264 (14%), Positives = 86/264 (32%), Gaps = 21/264 (7%) Query: 88 AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS----SAIQFLTSMRVL 143 + + + ++ ++ + RKITT+ IR + + + + ++ Sbjct: 75 SERTIKYYRETVQHLLSQT-ETSVRKITTEEIREYLSDYQKLNNCSNVTIDNVRRNISSF 133 Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSG 203 F W ++Y+ +P + + K KT + E +++ + +E + + L +G Sbjct: 134 FSWLEEEDYILKSPMRRIHKIKTKTVVKSVISDEGIEKLRDNCNE-KRDLAIIDLLYSTG 192 Query: 204 LRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDG----FMKLLAMTPIGKETFFIN 258 +R + + + I K V + + F+ Sbjct: 193 IRVGELVNLNIDDIDLEGRECIVYGKGDKERRVYFDAKAKVHLKDYIDTRTDKNKALFVT 252 Query: 259 NDKQK--MNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKT 315 D + + I + K + + H R+ AT + D G ++ G Sbjct: 253 LDAPHDRLKISGVEIRLRKLGRKLSLERVHPHKFRRSMATRAIDKGMPIEQVQKILGHSQ 312 Query: 316 VDQAETY-------TKGADRIRLG 332 +D Y K A + L Sbjct: 313 IDTTMQYAMVNQNNVKTAHQKYLA 336 >gi|257063564|ref|YP_003143236.1| site-specific recombinase XerD [Slackia heliotrinireducens DSM 20476] gi|256791217|gb|ACV21887.1| site-specific recombinase XerD [Slackia heliotrinireducens DSM 20476] Length = 460 Score = 95.1 bits (235), Expect = 1e-17, Method: Composition-based stats. Identities = 46/429 (10%), Positives = 115/429 (26%), Gaps = 103/429 (24%) Query: 14 ERTRHGKIIYYF----------------RKGHGRRIRLPYPHESTFIPAYMSALTGSTPK 57 ++ R G++++ R+ + R+ Y + L Sbjct: 26 KKNRKGQLVWRVCLSFGYETVIDGNGNKRRKRNKVQRMCY-GSLGDARKFCKQLQAEYEN 84 Query: 58 REYINSPRKKPTTLKWLISEYRKSAHWGS-LAVNSRISFESYFDQIIRKSGDFDYRKITT 116 + + + +W ++ + + ++ + GD ++ Sbjct: 85 IDQ----QAAQGSFRWACDKWLSWMRAKGGASQAVLRQYTTWLGYMSDVLGDKKLVEVKK 140 Query: 117 KHIRSGVESRKHTP----SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP-KRKTEGI 171 + + + + K + ++ + + LF++ V +++ NPC ++E P K + Sbjct: 141 SDVEAAMVAVKTSRDLSNTTMNKMFAVTKRLFEYCVDSDWITRNPCRNIEAPAKDRVTSR 200 Query: 172 RPWTKEDMQQFKSFWSEGSQPR--------------------------------LAFEFL 199 T E+ + +A + Sbjct: 201 HSLTDEESAVLRKRLDLAEADAISGYLEKENRQSDHNNLFGRSCVRGLSHISGIIAIRIM 260 Query: 200 LYSGLRCSDSCRAGVQ--HLQNNIFSIKTQKTGTI-------------ITVE-------- 236 L +G+R + C N+ ++ T ++ + VE Sbjct: 261 LATGMRRGEVCGLTWGAVDFDNSQIYVRQSLTASVEVKDPKTYSGRRSLFVEQNTMRHLK 320 Query: 237 ---------LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWF--------KAKATK 279 L A+T + ++ ++ T S W+ + Sbjct: 321 EWKTFQAKALHMVMPDGTALTQTDETPVCCSDVGGWLDPTNLSRWWGGNKNKGREGFRDS 380 Query: 280 AGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKG--ADRIRLGIKN 335 G + H +R AT+ G + G + Y A+ Sbjct: 381 LGFPELNMHELRHTQATMLLGNGIDVKSVQTRLGHSRASVTLDQYAHAIPANDKAAADLM 440 Query: 336 SRRISSVVD 344 ++ V Sbjct: 441 GEIMNKSVP 449 >gi|120586881|ref|YP_961226.1| phage integrase family protein [Desulfovibrio vulgaris subsp. vulgaris DP4] gi|120564295|gb|ABM30038.1| phage integrase family protein [Desulfovibrio vulgaris DP4] Length = 343 Score = 95.1 bits (235), Expect = 1e-17, Method: Composition-based stats. Identities = 41/263 (15%), Positives = 80/263 (30%), Gaps = 29/263 (11%) Query: 88 AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFLTSMRVLF 144 + + + R + I HI + S + P++ L ++ F Sbjct: 59 SPGTVRVYLPTLLAFFR-FAETPVTHIRVWHIEDWLNSLEQAAYKPATIATKLACIKSFF 117 Query: 145 KWAVRQEYVAINPCLSVERPKR--KTEGIRPWTKEDMQQFKSFWSEGSQPR--LAFEFLL 200 + + + +NP V+ PK G R E++Q+ + R L L Sbjct: 118 GYLWKCGLLPLNPAAPVKGPKHIEGHHGDRVLLAEEVQELLEHTRRHAPARDHLMCRLLF 177 Query: 201 YSGLRCSDSCRAGV----QHLQNNIFSIKTQKTGTIITVELPDGFMKLL----------- 245 +G R +++ + ++ ++ K + +P L Sbjct: 178 AAGARAAEAVSLRWGDLRRDVRGRWYATVMGKGRKTRHLHIPKDLAADLLVWKGALYSIE 237 Query: 246 ---AMTPIGKETFFINND--KQKMNATQFSIWFKAKATKA-GVNKSAHGVRKFSATISAD 299 + F N + + A G S H +R AT S Sbjct: 238 PYQPAPGLDAVPLFPNRRVLTRPITVKTAYRIVTRWGEAALGRKISPHWLRHTFATHSRL 297 Query: 300 AGATAHELMATYGWKTVDQAETY 322 AGAT ++ G +++ Y Sbjct: 298 AGATLEQIRVALGHESIQTTIRY 320 >gi|330950377|gb|EGH50637.1| phage integrase, putative [Pseudomonas syringae Cit 7] Length = 335 Score = 95.1 bits (235), Expect = 1e-17, Method: Composition-based stats. Identities = 33/284 (11%), Positives = 88/284 (30%), Gaps = 29/284 (10%) Query: 11 VTKERTRHGKIIY---YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKK 67 V ++R R ++ Y+R +G+ + L + + + L + Sbjct: 2 VRRKRPRKNGTVWVGYYYRDANGKELPLGGDLDKARLK--WAELEAKAKPDDLKI----- 54 Query: 68 PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK 127 +K + Y + A ++ ++ + + IT + ++R Sbjct: 55 ---MKGIFDRYERDII-PKKAARTQKDNKAELKHLRKGFETAPIDAITPSMVAQYRDART 110 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAI-NPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + A + + + ++ A + NPC V + K K Sbjct: 111 AK-TRANREIALLSHVYNMAREWGFTDRENPCAGVRKNKEKVRDYYA-NDMVWAAVYGQA 168 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL-----PDGF 241 + + A + +G R +D ++ + +++ KTG + +++ P+ Sbjct: 169 PQELKD--AMDLAYLTGQRPADVIAMNRSDIEGDYLNVQQGKTGKRLRIQMQNSGVPNSL 226 Query: 242 -----MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA 280 +L F ++ +++ + A Sbjct: 227 GLLIGAIMLRNAKHVSHHFILSRTGMRVSQQMLRNRWDEAREAA 270 >gi|213692647|ref|YP_002323233.1| phage integrase family protein [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213524108|gb|ACJ52855.1| phage integrase family protein [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320458797|dbj|BAJ69418.1| phage integrase [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 396 Score = 95.1 bits (235), Expect = 1e-17, Method: Composition-based stats. Identities = 52/356 (14%), Positives = 109/356 (30%), Gaps = 50/356 (14%) Query: 11 VTKERTRHGKIIYY--FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68 VT+ +T G+ Y +RK G + + + + P+ Sbjct: 4 VTRYKTSKGETRYRVRYRKPDGTQTDKRGFKRKIDAENWAAKRVTTAKAEGTYIDPQAGK 63 Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----- 123 T+ L + + + R ++ + + G+ +T + + V Sbjct: 64 ATVGELGPAWLAKKKLSTKPSHYRTLEGAWEKWVKPEWGNTPVSAVTRETTQQWVTGISQ 123 Query: 124 -----ESRK-----HTPSSAIQFLTS---MRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170 + R P SA L + + + A + + NP +E P+++ + Sbjct: 124 GKTVKDERGNEIVLAKPRSASVVLRAHGVLAGILDDAKKDRRIPDNPARGIELPRKRRKK 183 Query: 171 IRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY-SGLRCSDSCRAGVQHLQ----------- 218 T E + + + R +L G+R + V + Sbjct: 184 HVYLTAEQLDRLAGSV---TPWRRDLVLVLGLCGMRWGELIPLRVMDVDLEKHRIYIGVS 240 Query: 219 ----NNIF---SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI 271 + KT K I+ + D M+ L + F ++ M ++ Sbjct: 241 APMVGGVIIPDDTKTYKARAIMYPVVLDPIMRRLCADRKPGDLLFEQPGREGMMIREWGN 300 Query: 272 ------WFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319 W +AG+ + H +R +A++ AGA + G K+ Sbjct: 301 ASRDDGWLSVGLRRAGIPGHLTIHDLRHTAASLMVRAGANVKAVQRQLGHKSAAMT 356 >gi|75674624|ref|YP_317045.1| site-specific tyrosine recombinase XerC [Nitrobacter winogradskyi Nb-255] gi|123773314|sp|Q3SVJ8|XERC_NITWN RecName: Full=Tyrosine recombinase xerC gi|74419494|gb|ABA03693.1| tyrosine recombinase XerC subunit [Nitrobacter winogradskyi Nb-255] Length = 321 Score = 95.1 bits (235), Expect = 1e-17, Method: Composition-based stats. Identities = 43/311 (13%), Positives = 89/311 (28%), Gaps = 36/311 (11%) Query: 55 TPKREYINSPRKKPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFD--------QIIRK 105 + E + P + + I + L+ + ++ + Sbjct: 2 AKRAEPLPDPACAASDIGQQIVRWLTHLRAERRLSPKTLEAYARDVRQCLMFLGQHWSEQ 61 Query: 106 SGDFDYRKITTKHIRSGVESRKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE 162 + + IRS + +R+ S ++ L +R ++ R+ + ++ Sbjct: 62 VTLEGFVALEPADIRSFMAARRADDIGGRSLMRSLAGLRSFARFLEREGLGKVGALGAIR 121 Query: 163 RPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR---------LAFEFLLYSGLRCSDSCRAG 213 PK +P ++F + R L SGLR S++ Sbjct: 122 APKVGKSVPKPIHMSAAKRFADASERAGEDREPWIWARDAAVMALLYGSGLRISEALGLK 181 Query: 214 VQHL---QNNIFSIKTQKTGTIITVELPDGFMKLLA--------MTPIGKETFFINNDKQ 262 + + + T K V + + L+ P F+ Sbjct: 182 RRDVPPPGAGDVLVVTGKGNKTRMVPVLQNVLALIHEYVAMCPHSLPPEGP-IFVGARGG 240 Query: 263 KMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE 320 + A + G+ + H +R AT G + G ++ + Sbjct: 241 PLRARIIQLVMARMRGALGLPDSATPHALRHSFATHLLSRGGDLRAIQELLGHASLSTTQ 300 Query: 321 TYTKGADRIRL 331 YT G D RL Sbjct: 301 IYT-GIDSERL 310 >gi|32472343|ref|NP_865337.1| integrase/recombinase Y4QK [Rhodopirellula baltica SH 1] gi|32443579|emb|CAD73021.1| putative integrase/recombinase Y4QK [Rhodopirellula baltica SH 1] Length = 348 Score = 95.1 bits (235), Expect = 1e-17, Method: Composition-based stats. Identities = 43/296 (14%), Positives = 86/296 (29%), Gaps = 44/296 (14%) Query: 64 PRKKPTTL--KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121 + P + + L + H A + + Q+ +G ++ +H+R Sbjct: 43 SQDAPGSHFPESLRLRLSEDLHLTGKAKRTHDGYIRAVRQLSDFAG-CSPDQVNEQHVRQ 101 Query: 122 GVESRKHTPSSAIQFLTS----MRVLFKWAVRQEYVAINPCLSVERPKRK--TEGIRPWT 175 K+ + A L ++ F ++++ ++ K + T T Sbjct: 102 FFLHLKNDRNFAYGSLRVAFSGIKFFFTHTCKRDW------EIIKMLKLQNITTLPEVLT 155 Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLYS----GLRCSDSCRAGVQHLQ--NNIFSIKTQKT 229 ++Q + R ++ GLR +++ V + + K Sbjct: 156 ---IEQVHELIGSATTQR--MFVYFWTVYSLGLRLNEALHLQVSDIDAERGWVHVHRGKG 210 Query: 230 GTIITVELPDGFMKLLAM--TPIGKETFFINNDKQ--------------KMNATQFSIWF 273 V LP ++LL +F D + M+ T Sbjct: 211 AKDRYVPLPTTTVRLLRNYWASHRHPSFLFPADGRKHDLAKDGVSEATTPMSETAVQGAM 270 Query: 274 KAKATKA--GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 K G S H +R AT +AG + G ++ Y D Sbjct: 271 KQITKNLRFGKKVSIHTLRHSYATHLLEAGVGLKVIQKYLGHSSLQTTMVYLHLTD 326 >gi|320663643|gb|EFX30917.1| putative defective integrase; Qin prophage [Escherichia coli O157:H7 str. LSU-61] Length = 431 Score = 95.1 bits (235), Expect = 1e-17, Method: Composition-based stats. Identities = 46/317 (14%), Positives = 99/317 (31%), Gaps = 64/317 (20%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK-ITTKHIRSGVESR-- 126 T+K L ++ +A S ++ + I+ G+ + I + + + + Sbjct: 85 TIKELAEKFLALKE-TEVAKTSLNTYRAVIKNILSIIGEKNLASSINKEKLLAVRKELLT 143 Query: 127 --------------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172 + + ++T++ +F++ V Y+A NP + K Sbjct: 144 GYQIPKSNYIVTQPGRSAVTVNNYMTNLYAVFQFGVDNGYLADNPFKGISPLKESRTIPD 203 Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIK----- 225 P ++E+ + Q + + +Y+G+R + C G + + N I+ Sbjct: 204 PLSREEFIRLIDAC-RNQQAKNLWCVSVYTGIRPGELCALGWEDIDLKNGTMIIRRNLAK 262 Query: 226 --------TQKTGTIITV--ELPDGFMKLLAMTPIGKETFF------------------- 256 T +I + D +A+T + KE Sbjct: 263 DRFTVPKTQAGTNRVIHLIKPAIDALRSQMALTRLSKEHIIDVHLREFGRTEKQKCTFVF 322 Query: 257 -------INNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELM 308 + N + A +AG+ ++ ++ R A S AGA + Sbjct: 323 QPEVSAKVKNYGDHFTVDSIRQMWDAAVKRAGIRHRKSYQSRHTYACWSLTAGANPAFIA 382 Query: 309 ATYGWKTVDQA-ETYTK 324 G + Y K Sbjct: 383 NQMGHADAQMVFQVYGK 399 >gi|308174806|ref|YP_003921511.1| Tyrosine recombinase xerD [Bacillus amyloliquefaciens DSM 7] gi|307607670|emb|CBI44041.1| Tyrosine recombinase xerD [Bacillus amyloliquefaciens DSM 7] gi|328554760|gb|AEB25252.1| Tyrosine recombinase xerD [Bacillus amyloliquefaciens TA208] Length = 383 Score = 95.1 bits (235), Expect = 1e-17, Method: Composition-based stats. Identities = 61/386 (15%), Positives = 116/386 (30%), Gaps = 65/386 (16%) Query: 11 VTKERTRHGKIIYYF----------RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY 60 + +T GK Y+ R +R FI SA+ K Y Sbjct: 4 IHPYKTSKGKQKYFVAYDVYDENGERHQKKKRGFDKKKDAKEFIAEVESAIN----KGMY 59 Query: 61 INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHI 119 I +P+ T+ + + + ++ + +++ + I GD + T+HI Sbjct: 60 IQTPKI---TVNDYLERWLEVKS-INIGSQTVTLYKNSLKNYIYPYIGDILLANLKTEHI 115 Query: 120 RSGV------ESRKHTPSSAIQFLT----SMRVLFKWAVRQEYVAINPCLSVERPKR-KT 168 + + + K A + + + + V + + N PK K Sbjct: 116 NNFIHALYTKDRGKGKIGYAYKTIKRSHEIVSAALDYGVDNKLIKTNVAKKAILPKEPKR 175 Query: 169 EGIRPWTKEDMQQFKSFWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSI 224 + I W E QF E Q R LA+ + G+R + + + +N+ + Sbjct: 176 KRIDVWDLEQANQFLETSKEDEQNRYHLAYAIAIICGMRQGEILGLTWKDVDLEDNLLYV 235 Query: 225 KT-------------QKTGTIITVELPDGFMKLLAMTPI--------------GKETFFI 257 + + + T+E + ++ Sbjct: 236 EQTLSHDGKEILDDTKTKKSRRTIEFSESLADQFRQQKKIIESEKEKFGDDYQDQDLVIC 295 Query: 258 NNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTV 316 +NA KAGV K + H +R A++ G E+ G Sbjct: 296 TELGNPINARNVLRKQAKLMKKAGVPKITFHDLRHVHASLMLYFGHDIKEISERLGHAKS 355 Query: 317 D-QAETYTKGAD--RIRLGIKNSRRI 339 +TY + +L R I Sbjct: 356 SFTYDTYVHIMSKTKKKLIDNLQRSI 381 >gi|257867216|ref|ZP_05646869.1| phage integrase [Enterococcus casseliflavus EC30] gi|257873551|ref|ZP_05653204.1| phage integrase [Enterococcus casseliflavus EC10] gi|257801272|gb|EEV30202.1| phage integrase [Enterococcus casseliflavus EC30] gi|257807715|gb|EEV36537.1| phage integrase [Enterococcus casseliflavus EC10] Length = 410 Score = 95.1 bits (235), Expect = 1e-17, Method: Composition-based stats. Identities = 43/317 (13%), Positives = 102/317 (32%), Gaps = 51/317 (16%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHT 129 L+W +Y+ + + ++ + + I+ G+ KI+ + + V Sbjct: 72 LEWF-EQYKNT-----VKESTYVVQRVALNKHILPLFGERRISKISIPYCQKQVNHWYSY 125 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR------PWTKEDMQQFK 183 + +F++A + NP V RPKR+ + +TK ++ F Sbjct: 126 YKKYSNLIGMTNSIFQYAKSLRLIRRNPMEGVIRPKRQKQIDEEKYTAPFYTKAEVLYFL 185 Query: 184 SFWSEGSQP-RLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQ------------- 227 + P F L ++GLR + + + S+K Sbjct: 186 QIAKKYPDPLYPMFHILTFTGLRKGELLALRWKDIDFKRGTLSVKQTLTTVEDWKLAFQT 245 Query: 228 -KT-GTIITVELPDG----------------FMKLLAMTPIGKETFFINNDKQKMNATQF 269 KT ++ T+ + + G + F + + Sbjct: 246 PKTEKSLRTISIDNQTLSIFRQCILKQKAFFLKTGRKPVENGAQLLFTTEENKPYYLDFL 305 Query: 270 SIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGAD 327 + + + + HG R ++ ++GA+ E+ G V + Y ++ Sbjct: 306 NHNLTKILKENKLKHMTVHGFRHTHCSLLFESGASIKEVQVRLGHTDVRTTMDIYAHVSE 365 Query: 328 RIRLGIKNSRRISSVVD 344 + + + + R + ++ Sbjct: 366 QKK--EETADRFADYMN 380 >gi|255655227|ref|ZP_05400636.1| putative tyrosine recombinase [Clostridium difficile QCD-23m63] gi|296451212|ref|ZP_06892953.1| tyrosine recombinase XerD [Clostridium difficile NAP08] gi|296880435|ref|ZP_06904398.1| tyrosine recombinase XerD [Clostridium difficile NAP07] gi|296260033|gb|EFH06887.1| tyrosine recombinase XerD [Clostridium difficile NAP08] gi|296428676|gb|EFH14560.1| tyrosine recombinase XerD [Clostridium difficile NAP07] Length = 304 Score = 95.1 bits (235), Expect = 1e-17, Method: Composition-based stats. Identities = 42/265 (15%), Positives = 99/265 (37%), Gaps = 21/265 (7%) Query: 85 GSLAVNSRISF----ESYFDQIIRKSGDF-DYRKITTKHIRSGVESRKHTPSSAIQFLTS 139 L+ N+ S+ + Y + I +KS D + +E + ++ + ++S Sbjct: 15 KKLSENTVASYFMDIKKYMEYINQKSIKLIDIVENDIISYLIKLEKDNVSIATIARMISS 74 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLA 195 ++ + NP +++PK K E I T+E++++ +F + + + Sbjct: 75 IKSFHDYLFLNHICTNNPAKDIKKPKIKKENINILTEEEIERLLNFPKLTTPKLIRDKAI 134 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSI---------KTQKTGTIITVELPDGFMKLLA 246 FE L +G++ S+ ++ + +I I + I + L + Sbjct: 135 FEVLYGTGIKVSELVEMNIEDIDLDIDYIYCNSCCKSQRVIPLCDITKLYLEKYLKEARP 194 Query: 247 MTPIGKE-TFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHG--VRKFSATISADAGAT 303 + E + F+++ Q+ K + A ++K+ + +R A + GA Sbjct: 195 KMAVEGEKSLFVSSLGQRFTRQGLWKVIKKYSNLANIDKNINPTMLRHSFAIHLLNEGAN 254 Query: 304 AHELMATYGWKTVDQAETYTKGADR 328 + G + + Y D+ Sbjct: 255 IAVVSKILGNVNLSSLQVYLNHIDK 279 >gi|229126350|ref|ZP_04255367.1| DNA integration/recombination/invertion protein [Bacillus cereus BDRD-Cer4] gi|228657121|gb|EEL12942.1| DNA integration/recombination/invertion protein [Bacillus cereus BDRD-Cer4] Length = 347 Score = 95.1 bits (235), Expect = 1e-17, Method: Composition-based stats. Identities = 39/267 (14%), Positives = 84/267 (31%), Gaps = 36/267 (13%) Query: 93 ISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH---TPSSAIQFLTSMRVLFKWAV 148 + Y + +II G+ K+T+ H+++ V S + + + + +R + A+ Sbjct: 65 KVLKGYLNSRIIPSLGNIKLAKLTSLHMQNYVNSLRDEGLKRGTIEKIIKLIRNSLENAI 124 Query: 149 RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSD 208 E + N ++ K E + W ++++Q F + S+ + F L +G+R + Sbjct: 125 DLELITKNVAAKIKLSKADKEELTVWNEQEVQLFLKAAQD-SRYYIVFHMALVTGMRQGE 183 Query: 209 SCRAGVQHLQNNIFSIK--------------TQKTGTIITVELPDG-------------F 241 + + + KT + + L Sbjct: 184 LLGLRWKDVDLEKGHLTISQTLSHDGKTFLVGGKTKSSLRKILLPASTVAKLKKHGVVVL 243 Query: 242 MKLLAMTP--IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISA 298 + L+ + +N A A V K H + AT+ Sbjct: 244 KEKLSQGEEYHDNDLVMCTPSGTSINPANVRRSLNALIQNAAVPKIRFHDLHHTHATLLM 303 Query: 299 DAGATAHELMATYGWKTVDQA-ETYTK 324 G + G + +TY+ Sbjct: 304 AKGVDVKVISERLGHSNIKITLDTYSH 330 >gi|254512300|ref|ZP_05124367.1| tyrosine recombinase XerC [Rhodobacteraceae bacterium KLH11] gi|221536011|gb|EEE38999.1| tyrosine recombinase XerC [Rhodobacteraceae bacterium KLH11] Length = 306 Score = 95.1 bits (235), Expect = 1e-17, Method: Composition-based stats. Identities = 41/274 (14%), Positives = 89/274 (32%), Gaps = 28/274 (10%) Query: 85 GSLAVNSRISFESYFDQI--------IRKSGDFDYRKITTKHIRSGVESRKHT---PSSA 133 + N++ ++ + + G +IT +R+ + ++++ S Sbjct: 23 AGRSENTQNAYRGDVTEFLSFMTLHHSERQGLAALERITVSDMRAWMADQRNSDVSARSL 82 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE----- 188 + L++++ ++W +E LS PK + RP ++ + Sbjct: 83 ARKLSAVKSFYRWLAEREGFEPTAVLSTRAPKFTKKLPRPLAEDAARAMIETVELQSASD 142 Query: 189 --GSQPRLAFEFLLYSGLRCSDSCRA-GVQHLQNNIFSIKTQKTGTIITVELP------D 239 ++ L GLR S++ G + I + + +P D Sbjct: 143 WVAARDVAVVTLLYGCGLRISEALSLTGADAPLPDTLRILGKGEKERVVPVIPAARSAVD 202 Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATIS 297 +++L F +N + + G+ +A H +R AT Sbjct: 203 RYLRLCPHPQSPDAALFRGVRGGALNPSAIQGVMAKARMQLGLPATATPHAMRHSFATHL 262 Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 AG + G ++ + YT D RL Sbjct: 263 LSAGGDLRAIQELLGHASLSTTQAYT-AVDTARL 295 >gi|91069971|gb|ABE10899.1| putative site-specific integrase/recombinase [uncultured Prochlorococcus marinus clone ASNC2259] Length = 321 Score = 95.1 bits (235), Expect = 1e-17, Method: Composition-based stats. Identities = 53/312 (16%), Positives = 96/312 (30%), Gaps = 25/312 (8%) Query: 31 RRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHW-GSLAV 89 RR P TF+ ++ + + + P TL I++Y A Sbjct: 16 RRKNYVGPRSRTFLSRDLAQSWADAVEEKTKKVFKDIPFTLGEAINDYINGPLLLHRSAE 75 Query: 90 NSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPSSAIQFLTSMRVLFKWA 147 N + + GD + KH + R K P++ ++ L +RVL WA Sbjct: 76 NEKYPLRVTAESW---LGDIPLSDLQIKHFAVWRDERLLKVKPNTVMRELRILRVLIDWA 132 Query: 148 VRQE--YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS-QPRLAFE-FLLYSG 203 + + NP + +T +D Q+ S+ S + L L +G Sbjct: 133 RDERGAEIKDNPARHLRVRGTGDARAPFFTDQDEQRLLFELSQMSNKNHLRLTKLALATG 192 Query: 204 LRCSDSCRAGVQHLQ-NNIFSIKTQKT-------GTIITVELPDGFMKLLAMTPIGKETF 255 R S+ +++ N +K + LP K+L Sbjct: 193 FRRSELLSLTWRNIDLNKKLLYIHRKNCAATDNYSAPRLIPLPGKAKKILEELSERHGKI 252 Query: 256 FINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWK 314 + F +A + H +R + +G A E+ A G + Sbjct: 253 IELTKGAARHG------FDKARKRADLETLRFHDLRHIGISRMWSSGMNALEISACSGHR 306 Query: 315 TVDQAETYTKGA 326 + Y+ Sbjct: 307 DIKMLMRYSHYQ 318 >gi|1403511|emb|CAA67039.1| integrase [Pseudomonas aeruginosa] Length = 336 Score = 95.1 bits (235), Expect = 1e-17, Method: Composition-based stats. Identities = 42/306 (13%), Positives = 93/306 (30%), Gaps = 62/306 (20%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHT 129 ++ + R+ + ++ + ++ + IR G + + + + + RK + Sbjct: 16 VLDQLRERIRYLHYSLRTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75 Query: 130 PSSAIQFLTSMRVLFK--WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 S+ Q L ++ + ++ + RP+ T +++ + F Sbjct: 76 VSTHRQALAALLFFYGKVLCTDLPWLQ-----EIGRPRPSRRLPVVLTPDEVVRILGFL- 129 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQKTGTIITVELPDGFMKLL 245 EG RL + L +G+R S+ + V+ + ++ K + LP+ L Sbjct: 130 EGEH-RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPTL 188 Query: 246 AMTPIGKETFFINN---------------------------------------------D 260 +++ + Sbjct: 189 REQLSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVR 248 Query: 261 KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318 + M F FK +AG+ K + H +R AT +G + G V Sbjct: 249 RHHMYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVST 308 Query: 319 AETYTK 324 YT Sbjct: 309 TMIYTH 314 >gi|296160164|ref|ZP_06842983.1| integrase family protein [Burkholderia sp. Ch1-1] gi|295889638|gb|EFG69437.1| integrase family protein [Burkholderia sp. Ch1-1] Length = 345 Score = 95.1 bits (235), Expect = 1e-17, Method: Composition-based stats. Identities = 53/327 (16%), Positives = 95/327 (29%), Gaps = 23/327 (7%) Query: 15 RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT-TLKW 73 R R G +++ RL + + + ++P + Sbjct: 4 RKRKGSDVWHIDIRTPGGGRLRQTTGTADKKEAQELHDKLKHEAWRVAKMGERPRYVFEQ 63 Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV--------ES 125 + Y + ++ + D IT I + + Sbjct: 64 AAARYLTEQSNKADYD----DRAAHIRHFLTHFAGRDLGSITRPEIMAAIPTESPKKHRK 119 Query: 126 RKHTPSSAIQFLTSMRVLF-KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 P++ ++L ++R L A E++ P L T +R T+++ ++ Sbjct: 120 TPLKPATRNRYLATIRALLLDAAKDWEWIDRAPSL--PEFPEPTIRVRWITRDEAKRLLR 177 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ----NNIFSIKTQKTGTIITVELPDG 240 E + R F +GLR + + K I V L D Sbjct: 178 ALDE-TCMRDITAFCFATGLRQRNILELEWSQVDLVSRRAWIHPDQAKARKPIGVPLNDE 236 Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISAD 299 + LL ETF D + + W ++ A + N H VR A+ Sbjct: 237 AIALLRKQIGQHETFVFVRDGKPLKKWDDWKW-RSACRLANISNFRFHDVRHTWASWHVQ 295 Query: 300 AGATAHELMATYGWKTVDQAETYTKGA 326 G L GW T + Y A Sbjct: 296 NGTPLQVLKELGGWATFEMVLRYAHLA 322 >gi|228969782|ref|ZP_04130546.1| Integrase/recombinase [Bacillus thuringiensis serovar sotto str. T04001] gi|228789934|gb|EEM37752.1| Integrase/recombinase [Bacillus thuringiensis serovar sotto str. T04001] Length = 304 Score = 95.1 bits (235), Expect = 1e-17, Method: Composition-based stats. Identities = 40/290 (13%), Positives = 90/290 (31%), Gaps = 39/290 (13%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD----YRKITTKHIRSGVESRKHT 129 ++ +YR + N+ IS+ + ++ G K R + +K Sbjct: 1 MLHKYRNYLIDKGKSRNTVISYINDLQVFFQEMGVNPDSYVISNDIKKWTRDMLNPKKGK 60 Query: 130 P---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP---WTKEDMQQFK 183 S+ + L ++R F WA R+ Y+ +NP ++ K E T+++ ++ Sbjct: 61 ALSVSTINRRLNTLRSYFSWAERENYIRVNPMTDIKDLKMVDEEHEKIMWLTEKEFEELL 120 Query: 184 SF-------------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230 + + R+ L Y+GLR + + + ++ I+ G Sbjct: 121 ERMRKYPIKTRGVNAEEKYRRDRVIIYILTYAGLRVEELSNLKITDIDLDVKKIRVVGKG 180 Query: 231 TII-TVELPDGFMKLL------------AMTPIGKETFFI-NNDKQKMNATQFSIWFKAK 276 + T+ + + + + F + + K + + Sbjct: 181 NKVRTIPMSNFLYNEILEWLQFRSKVSNEKEIVSHSPFLLYSQRSGKFSIRGIQNMIENY 240 Query: 277 ATKAGVNKSAHGVRKFSATISADA-GATAHELMATYGWKTVDQAETYTKG 325 +T + H R A ++ G + Y K Sbjct: 241 STPDK-KLTPHMFRHTFCKWMLKATNNDIEKVRRLAGHSHISTTTRYLKS 289 >gi|86139634|ref|ZP_01058202.1| integrase/recombinase [Roseobacter sp. MED193] gi|85823817|gb|EAQ44024.1| integrase/recombinase [Roseobacter sp. MED193] Length = 306 Score = 95.1 bits (235), Expect = 1e-17, Method: Composition-based stats. Identities = 46/273 (16%), Positives = 90/273 (32%), Gaps = 18/273 (6%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH---TPSSAIQFLTSMR 141 + ++ S G T + +R+ TPS+ + ++R Sbjct: 31 RGMGEKAQKSHIRAIKDFAAFLGRPPDTA-TPEDLRAYQLHMTDSGVTPSTFNVRIVALR 89 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM-QQFKSFWSEGSQPRLAFEFLL 200 F +E + ++ + ++ E++ + G + R A Sbjct: 90 FFFSMTCGREEMKR----YMQFRTEPRKLPVVFSVEEVSDILMAAPGPGLKYRAALSISY 145 Query: 201 YSGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTIITVELPDGFMKLLAMTPIGKET---F 255 +GLR S+ C + + ++ ++ K V L G ++LL Sbjct: 146 GAGLRASEVCNLKISDIDSDRMLIHVELGKGQKDRKVMLSPGLLELLRAWWREARPEGWL 205 Query: 256 FINNDK-QKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYG 312 F K ++ Q S F + AGV K + H +R AT +A + G Sbjct: 206 FPGKPKINPISPRQLSRAFTSAKHMAGVKKPATLHTLRHSFATHLLEANTDVRVIQVLLG 265 Query: 313 WKTVDQAETYTKGADR-IRLGIKNSRRISSVVD 344 + YT A + IR + ++ + D Sbjct: 266 HAKLTTTARYTHVATKTIRDTVSPYEMLAKLQD 298 >gi|237717514|ref|ZP_04547995.1| phage integrase [Bacteroides sp. 2_2_4] gi|229453183|gb|EEO58974.1| phage integrase [Bacteroides sp. 2_2_4] Length = 407 Score = 95.1 bits (235), Expect = 1e-17, Method: Composition-based stats. Identities = 45/293 (15%), Positives = 91/293 (31%), Gaps = 26/293 (8%) Query: 58 REYINSPRKKPTTLKWL-ISEYRKSAHWGSLAVNSRISFESYFDQ----IIRKSGDFDYR 112 +E P ++ + I+EY + + I +++ + Sbjct: 91 KELHMLPESGSPSISDIRINEYLNHLAYRRYSHAYIKGRRYILTYFYKIIEKENQEHPLT 150 Query: 113 KITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172 + ++ ++L +RV ++AV + + + ++ PK +E Sbjct: 151 LEDIDKYIEYYTINQVQRNTLKEYLCCIRVYLRYAVEKGWCIADLDKALITPKVYSEENL 210 Query: 173 P--WTKEDMQQFKSFWSE-----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFS 223 P + +Q+ E S+ F L GLRCS+ + + Sbjct: 211 PSFLPWDKVQKLLQTVKEQTGKSASRDYAIFMLLAMYGLRCSEVANLKLSDIDWRKEQIY 270 Query: 224 IKTQKTGTIITVELP--------DGFMKLLAMTPIGKETFFIN-NDKQKMNATQFSIWFK 274 IK K + L D FF + ++ + Sbjct: 271 IKRAKNCRPQILPLLHNVGEAIIDYLKNGRPNEVDSDSLFFCAPAPIRPISCNAIASVVY 330 Query: 275 AKATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 +G+N K H +R AT + G T ++ G K+++ Y K Sbjct: 331 RYLKYSGINIKHKGPHSLRHSHATFLINEGQTLKDVGDLLGHKSMEATRVYAK 383 >gi|291295791|ref|YP_003507189.1| integrase family protein [Meiothermus ruber DSM 1279] gi|290470750|gb|ADD28169.1| integrase family protein [Meiothermus ruber DSM 1279] Length = 374 Score = 95.1 bits (235), Expect = 1e-17, Method: Composition-based stats. Identities = 47/274 (17%), Positives = 94/274 (34%), Gaps = 30/274 (10%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSSAIQFLTSMRVL 143 L ++ ++ +Y Q+++ +++ IR+ +PS+ +R Sbjct: 84 KGLRPSTVQNYRNY-QQLLKPLAATPLTRLSPLAIRARFAELAELSPSTRRHLYQFLRAA 142 Query: 144 FKWAVRQEYVAINPCLSVERPKRKT-EGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS 202 + AVR + NP +V+ P T R W +E + F + ++G + F +L + Sbjct: 143 LRDAVRVGLLEANPMDAVDPPTGGTVRPPRAWNREQVSAFLA-AAQGHRLYPMFYVMLTT 201 Query: 203 GLRCSDSCRAGVQHLQNNIFSIK----------TQKT-GTIITVEL----------PDGF 241 GLR ++ Q Q I+ KT G+ + L Sbjct: 202 GLRIGEAMALRWQDWQGEKLWIRHTLTKQRTLGPTKTLGSSAPIYLDLATQTILSEHRTR 261 Query: 242 MKLLAMTPI---GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATIS 297 T + F + ++ F+A +A V + HG+R +++ Sbjct: 262 QAEERATAKRWLDHDLIFPSEVGTPLSYRNVMRTFQALTEQAKVPRIGLHGLRHTYTSMA 321 Query: 298 ADAGATAHELMATYGWKTVD-QAETYTKGADRIR 330 AG + ++ K Y + R Sbjct: 322 LQAGLSPKQVADRLRHKDPALTLRIYQHLQEEDR 355 >gi|298206637|ref|YP_003714816.1| putative tyrosine recombinase [Croceibacter atlanticus HTCC2559] gi|83849267|gb|EAP87135.1| putative tyrosine recombinase [Croceibacter atlanticus HTCC2559] Length = 265 Score = 95.1 bits (235), Expect = 1e-17, Method: Composition-based stats. Identities = 35/256 (13%), Positives = 81/256 (31%), Gaps = 18/256 (7%) Query: 85 GSLAVNSRISF----ESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSM 140 LA N+ + + + K D + + + Q + + Sbjct: 4 KRLAQNTIDIYTEVTRIFLRYLSLKQADEITNIWVQRFNYDYIIGNGFGVAYQNQCINGI 63 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL 200 + + + + + RPK+ + +KE++ Q + + + + L Sbjct: 64 KKFVSFLGKPLVLDT-----LVRPKKPQKLPVVLSKEEISQLFNVIN-NLKHKALLALLY 117 Query: 201 YSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLLA---MTPIGKETF 255 +GLR ++ + + + + I+ K L + F+ LL K Sbjct: 118 SAGLRIGEALQLTPEAIDSKRMLIRIEQAKGNKDRYTLLSESFLTLLRMYYKKYKPKTYL 177 Query: 256 FINNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRKFSATISADAGATAHELMATYG 312 F + ++ K AG+ + + H +R AT ++G + G Sbjct: 178 FEGQNGGAYTSSSAQKVLKRALRDAGITRIGVTLHTLRHSFATHLLESGTDLRYIQELLG 237 Query: 313 WKTVDQAETYTKGADR 328 + YT + + Sbjct: 238 HNSPKTTMIYTHVSSK 253 >gi|295110839|emb|CBL24792.1| Site-specific recombinase XerD [Ruminococcus obeum A2-162] Length = 411 Score = 95.1 bits (235), Expect = 1e-17, Method: Composition-based stats. Identities = 52/349 (14%), Positives = 97/349 (27%), Gaps = 75/349 (21%) Query: 66 KKPTTLKWLISEY--RKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSG 122 T+ ++ Y KS +L ++ ++ +D+ I G + +I + Sbjct: 68 AGKATVNFVFDRYMSLKS----NLKPTTKSNYLYMYDRFIRDTFGKRNIAEIKYSDVVQF 123 Query: 123 VESRKHTPSSAIQFLTSMRVL----FKWAVRQEYVAINPCLSV-----ERPKRKTEGIRP 173 I L ++ L F+ AVR + + NP V + KT Sbjct: 124 YNHLIEKQELQINTLETVHTLLHPTFQLAVRDDIIRKNPTDGVMAELKKNLGMKTGVRHA 183 Query: 174 WTKEDMQQFKSF---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIF------- 222 T + F + F L +G R + + + Sbjct: 184 LTIPQQRAFMEYIATHPIYYHWWPIFTVFLGTGCRIGEVLGLRWEDINYEKRIISINHNL 243 Query: 223 -------------SIKTQKTGTII-TVELPDGFMKLLAM------------TPIGKET-- 254 I T KT + T+ + D M I T Sbjct: 244 TYYPVGEDRASENHIATPKTEAGMRTIPMLDTVKDAFEMIWEEQKENGWTDAEIDGMTGF 303 Query: 255 FFINNDKQKMNATQFSIWFKA--------KATKAGVNK---------SAHGVRKFSATIS 297 F N MNA + K + +A SAH +R T Sbjct: 304 VFCNRYGNVMNAQSVNRAIKRISSAYNATEEIEAKKEHREPVLLPNFSAHSLRHTFCTRL 363 Query: 298 ADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSVVDS 345 + + + G K + + Y + + + + +++ +D Sbjct: 364 CERETNLKVIQSIMGHKDIQTTMDIYAEATEEKK--QETFEHLAATMDV 410 >gi|237803677|ref|ZP_04591262.1| phage integrase family site specific recombinase [Pseudomonas syringae pv. oryzae str. 1_6] gi|331025659|gb|EGI05715.1| phage integrase family site specific recombinase [Pseudomonas syringae pv. oryzae str. 1_6] Length = 367 Score = 95.1 bits (235), Expect = 1e-17, Method: Composition-based stats. Identities = 55/349 (15%), Positives = 108/349 (30%), Gaps = 39/349 (11%) Query: 7 LPPFVTKERT-RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR 65 LPP + ++ R+G Y +R R+ + +A + + + Sbjct: 13 LPPNLYRKTDKRNGHTYYTYRDPVTGRMF-GLGKDKAAAIMEAAAANHADVLKPTLAQRI 71 Query: 66 KKP-----TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120 +P T + EY L+ ++ S +S I G+ R I T I Sbjct: 72 AEPVAVDDRTFADWLGEYDLIYTERGLSAHTTRSIKSRLKVINNAFGEKYMRSIRTMDIA 131 Query: 121 SGVES--RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED 178 + + + + + + +R +F A+ + +NP + + + K + R + E Sbjct: 132 TFLATFTKAGKAPMSKALRSLLRDVFTEAIAAGWCDLNPVDATKAARSKVKRGR-LSLEL 190 Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238 + + R A E L +G R D + + + KTG + + Sbjct: 191 WKAAHAATDRPWLKR-AMELALLTGQRRDDIGSMLFKDEHDGFLHVIQSKTGARLRISTS 249 Query: 239 DGFMK----------------LLAMTPIGKETFFINNDKQKMNATQFSIWFKAK----AT 278 L T + + ++ F A Sbjct: 250 LRLEAIDLDLSNVIKMCRDRVLSKHLVHHARTVAVAKAGSPVKLNTLTLAFAEARDKGAA 309 Query: 279 KAGVNK-----SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 G++ S H +R +A + A G +L G + E Y Sbjct: 310 ALGIDLGTSPPSFHEMRSLAARLHALEGRDPQKL---LGHRNAAMTEMY 355 >gi|32472034|ref|NP_865028.1| integrase [Rhodopirellula baltica SH 1] gi|32397406|emb|CAD72712.1| integrase [Rhodopirellula baltica SH 1] Length = 348 Score = 95.1 bits (235), Expect = 1e-17, Method: Composition-based stats. Identities = 43/296 (14%), Positives = 86/296 (29%), Gaps = 44/296 (14%) Query: 64 PRKKPTTL--KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121 + P + + L + H A + + Q+ +G ++ +H+R Sbjct: 43 SQDAPGSHFPESLRLRLSEDLHLTGKAKRTHDGYIRAVRQLSDFAG-CSPDQVNEQHVRQ 101 Query: 122 GVESRKHTPSSAIQFLTS----MRVLFKWAVRQEYVAINPCLSVERPKRK--TEGIRPWT 175 K+ + A L ++ F ++++ ++ K + T T Sbjct: 102 FFLHLKNDRNFAYGSLRVAFSGIKFFFTHTCKRDW------EIIKMLKLQNITTLPEVLT 155 Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLYS----GLRCSDSCRAGVQHLQ--NNIFSIKTQKT 229 ++Q + R ++ GLR +++ V + + K Sbjct: 156 ---IEQVHELIGSATTQR--MFVYFWTVYSLGLRLNEALHLQVSDIDAERGWVHVHRGKG 210 Query: 230 GTIITVELPDGFMKLLAM--TPIGKETFFINNDKQ--------------KMNATQFSIWF 273 V LP ++LL +F D + M+ T Sbjct: 211 AKDRYVPLPTTTVRLLRNYWASHRHPSFLFPADGRKHDLAKDGVSEATTPMSETAVQGAM 270 Query: 274 KAKATKA--GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 K G S H +R AT +AG + G ++ Y D Sbjct: 271 KQITKNLRFGKKVSIHTLRHSYATHLLEAGVGLKVIQKYLGHSSLQTTMVYLHLTD 326 >gi|10955228|ref|NP_044257.1| hypothetical protein R751p48 [Enterobacter aerogenes] gi|32470064|ref|NP_863006.1| hypothetical protein p165897_094 [Escherichia coli] gi|53793938|ref|YP_112391.1| DNA integrase [uncultured bacterium] gi|60115543|ref|YP_209334.1| hypothetical protein SC029 [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|134047152|ref|YP_001102016.1| integrase IntI1 for transposon Tn21 [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|152973776|ref|YP_001338815.1| integrase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|157412100|ref|YP_001481441.1| IntI1 integrase [Escherichia coli APEC O1] gi|161867947|ref|YP_001598128.1| hypothetical protein pOU7519_85 [Salmonella enterica subsp. enterica serovar Choleraesuis] gi|168239505|ref|ZP_02664563.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|169797532|ref|YP_001715325.1| integrase/recombinase (E2 protein) [Acinetobacter baumannii AYE] gi|184156542|ref|YP_001844881.1| integrase [Acinetobacter baumannii ACICU] gi|237640301|ref|YP_002891156.1| IntI1 [Escherichia coli] gi|237810044|ref|YP_002894484.1| IntI1 [Escherichia coli] gi|294843384|ref|ZP_06788067.1| IntI1 [Acinetobacter sp. 6014059] gi|302141607|ref|YP_003813066.1| integrase type 1 [Klebsiella pneumoniae] gi|313116705|ref|YP_004032855.1| integrase [Edwardsiella tarda] gi|13344938|gb|AAK19119.1|AF263520_1 integrase INTI1 [Pseudomonas aeruginosa] gi|149117|gb|AAA92744.1| IntI1 integrase [Escherichia coli] gi|288634|emb|CAA51182.1| integrase [Klebsiella aerogenes] gi|1572565|gb|AAC64460.1| Int [Enterobacter aerogenes] gi|13508544|emb|CAC35169.1| DNA integrase IntI1 [Achromobacter denitrificans] gi|15375396|gb|AAK95981.1| IntI1 integrase [Escherichia coli] gi|17046108|dbj|BAB72152.1| DNA integrase [Escherichia coli] gi|17157973|gb|AAL36429.1| IntI1 integrase [Pseudomonas aeruginosa] gi|24527229|gb|AAM89398.1| IntI1 integrase [Klebsiella pneumoniae] gi|28629321|gb|AAO49601.1| IntI1 [Escherichia coli] gi|30524990|emb|CAD56838.1| Integrase INTI1 [Pseudomonas aeruginosa] gi|33358378|gb|AAQ16665.1| IntI1 [Escherichia coli] gi|45758101|gb|AAS76313.1| Int [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|53136974|emb|CAG30882.1| DNA integrase [uncultured bacterium] gi|56786620|gb|AAA92752.2| IntI1 integrase [Escherichia coli] gi|70905581|gb|AAZ14844.1| IntI1 [Acinetobacter baumannii] gi|72536052|gb|AAZ73121.1| IntI1 [Klebsiella pneumoniae] gi|78057541|gb|ABB17271.1| site-specific recombinase [Vibrio cholerae] gi|78709991|gb|ABB48427.1| IntI1 integrase [Salmonella enterica subsp. enterica serovar Kentucky] gi|84180556|gb|ABC54721.1| IntI1 [Vibrio cholerae] gi|86212237|tpd|FAA00063.1| TPA: IntI1 integrase [Escherichia coli] gi|90265400|emb|CAJ77082.1| Integrase [Acinetobacter baumannii] gi|99867125|gb|ABF67770.1| IntI1 integrase [Escherichia coli APEC O1] gi|108945866|gb|ABG23475.1| integrase [Morganella morganii] gi|110346525|emb|CAJ58443.1| class 1 DNA integrase [Pseudomonas aeruginosa] gi|126635814|gb|ABO21789.1| IntI1 [Pseudomonas aeruginosa] gi|133905071|gb|ABO41086.1| integrase IntI1 for transposon Tn21 [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|134034958|gb|ABO46012.1| integrase [Enterobacter cloacae] gi|148455749|gb|ABQ65123.1| IntI1 [Pseudomonas aeruginosa] gi|149850111|emb|CAG29002.1| IntI1 [Klebsiella pneumoniae] gi|150958558|gb|ABR80585.1| integrase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|161087326|gb|ABX56796.1| IntI1 [Salmonella enterica subsp. enterica serovar Choleraesuis] gi|169150459|emb|CAM88359.1| Integrase/recombinase (E2 protein) [Acinetobacter baumannii AYE] gi|183208136|gb|ACC55534.1| integrase [Acinetobacter baumannii ACICU] gi|191174836|emb|CAQ43032.1| DNA integrase [Pseudomonas aeruginosa] gi|197287812|gb|EDY27202.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|207999196|emb|CAQ52799.1| class 1 integrase [Pseudomonas aeruginosa] gi|222353664|emb|CAU08341.1| integrase [Pseudomonas aeruginosa] gi|223868914|gb|ACN22478.1| integrase 1 [Klebsiella oxytoca] gi|224983001|gb|ACN73419.1| IntI1 [Acinetobacter sp. NFM2] gi|225121196|gb|ACN81019.1| IntI1 integrase [Acinetobacter baumannii] gi|226876274|gb|ACO89459.1| IntI1 integrase [Cloning vector pPSX] gi|229561520|gb|ACQ77723.1| IntI1 [Escherichia coli] gi|229561900|gb|ACQ78101.1| IntI1 [Escherichia coli] gi|254595917|gb|ACT75274.1| integrase [Acinetobacter baumannii] gi|283148037|gb|ADB13428.1| class 1 integrase [Escherichia coli] gi|283484045|gb|ADB23335.1| IntI1 integrase [Salmonella enterica subsp. enterica serovar Typhimurium] gi|289065298|gb|ADC80800.1| IntI1 [Escherichia coli] gi|289065323|gb|ADC80824.1| IntI1 [Escherichia coli] gi|294884937|gb|ADF47470.1| integrase [Pseudomonas aeruginosa] gi|296033872|gb|ADG84835.1| integrase type 1 [Klebsiella pneumoniae] gi|299757085|emb|CAB92435.2| class 1 integrase [Acinetobacter baumannii] gi|307639753|gb|ADN80878.1| IntI1 integrase [Salmonella enterica subsp. enterica serovar Typhimurium] gi|311629588|gb|ACI29751.2| IntI1 [Pseudomonas aeruginosa] gi|312192342|gb|ADQ43828.1| integrase [Edwardsiella tarda] gi|316994927|gb|ADU79012.1| IntI1 [Aeromonas veronii] gi|317109966|gb|ADU90903.1| IntI1, DNA integrase [uncultured bacterium] gi|324007543|gb|EGB76762.1| integron integrase [Escherichia coli MS 57-2] Length = 337 Score = 95.1 bits (235), Expect = 1e-17, Method: Composition-based stats. Identities = 42/306 (13%), Positives = 94/306 (30%), Gaps = 62/306 (20%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHT 129 ++ + R+ + ++ + ++ ++ IR G + + + + + RK + Sbjct: 16 VLDQLRERIRYLHYSLRTEQAYVNWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75 Query: 130 PSSAIQFLTSMRVLFK--WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 S+ Q L ++ + ++ + RP+ T +++ + F Sbjct: 76 VSTHRQALAALLFFYGKVLCTDLPWLQ-----EIGRPRPSRRLPVVLTPDEVVRILGFL- 129 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQKTGTIITVELPDGFMKLL 245 EG RL + L +G+R S+ + V+ + ++ K + LP+ L Sbjct: 130 EGEH-RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSL 188 Query: 246 AMTPIGKETFFINN---------------------------------------------D 260 +++ + Sbjct: 189 REQLSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVR 248 Query: 261 KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318 + M F FK +AG+ K + H +R AT +G + G V Sbjct: 249 RHHMYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVST 308 Query: 319 AETYTK 324 YT Sbjct: 309 TMIYTH 314 >gi|283796718|ref|ZP_06345871.1| integrase/recombinase, phage integrase family [Clostridium sp. M62/1] gi|291075602|gb|EFE12966.1| integrase/recombinase, phage integrase family [Clostridium sp. M62/1] Length = 331 Score = 95.1 bits (235), Expect = 1e-17, Method: Composition-based stats. Identities = 34/248 (13%), Positives = 83/248 (33%), Gaps = 14/248 (5%) Query: 88 AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHTPSSAIQFLTSMRVL 143 + S + S ++ K G +ITT +R+ + +K + + + Sbjct: 70 SEKSLKYYASTIRTMLDKIG-KQVLEITTDDLRAYLTDYQAEKKSSKVTIDNIRRILSSF 128 Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSG 203 F W ++Y+ +P + + K ++ E +++ + + + L +G Sbjct: 129 FTWLEDEDYILKSPIRRIHKVKSAATIKETYSDESLEKMRDKCDS-LRDLAMIDMLSSTG 187 Query: 204 LRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDG----FMKLLAMTPIGKETFFIN 258 +R + R ++ + + K V L + F++ Sbjct: 188 MRVGEMVRLNRDDIRFDERECVVFGKGDKERIVYFDARTKIHLQNYLQSRTDSEPALFVS 247 Query: 259 NDK--QKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKT 315 +++ + + + + K H R+ AT++ D G +L G + Sbjct: 248 LRSPHRRLTIGGIELRLRELGKRLDIPKVHPHKFRRTLATMAIDKGMPIEQLQHLLGHQR 307 Query: 316 VDQAETYT 323 +D Y Sbjct: 308 IDTTMHYA 315 >gi|312902286|ref|ZP_07761494.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus faecalis TX0635] gi|86652132|gb|ABD14561.1| Int [Enterococcus faecium] gi|283466092|emb|CBG92867.1| Int6000 protein [Enterococcus casseliflavus] gi|310634345|gb|EFQ17628.1| toxin-antitoxin system, toxin component, PIN family [Enterococcus faecalis TX0635] Length = 410 Score = 95.1 bits (235), Expect = 1e-17, Method: Composition-based stats. Identities = 43/317 (13%), Positives = 102/317 (32%), Gaps = 51/317 (16%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHT 129 L+W +Y+ + + ++ + + I+ G+ KI+ + + V Sbjct: 72 LEWF-EQYKNT-----VKESTYVVQRVALNKHILPLFGERRISKISIPYCQKQVNHWFSY 125 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR------PWTKEDMQQFK 183 + +F++A + NP V RPKR+ + +TK ++ F Sbjct: 126 YKKYSNLIGMTNSIFQYAKSLRLIRRNPMEGVIRPKRQKQIDEEKYTAPFYTKAEVLYFL 185 Query: 184 SFWSEGSQP-RLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQ------------- 227 + P F L ++GLR + + + S+K Sbjct: 186 QIAKKYPDPLYPMFHILTFTGLRKGELLALRWKDIDFKRGTLSVKQTLTTVEDWKLAFQT 245 Query: 228 -KT-GTIITVELPDG----------------FMKLLAMTPIGKETFFINNDKQKMNATQF 269 KT ++ T+ + + G + F + + Sbjct: 246 PKTEKSLRTISIDNQTLSIFRQCILKQKAFFLKTGRKPVENGAQLLFTTEENKPYYLDFL 305 Query: 270 SIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGAD 327 + + + + HG R ++ ++GA+ E+ G V + Y ++ Sbjct: 306 NHNLTKILKENKLKHMTVHGFRHTHCSLLFESGASIKEVQVRLGHTDVRTTMDIYAHVSE 365 Query: 328 RIRLGIKNSRRISSVVD 344 + + + + R + ++ Sbjct: 366 QKK--EETADRFADYMN 380 >gi|54294005|ref|YP_126420.1| hypothetical protein lpl1066 [Legionella pneumophila str. Lens] gi|53753837|emb|CAH15303.1| hypothetical protein lpl1066 [Legionella pneumophila str. Lens] gi|307609834|emb|CBW99352.1| hypothetical protein LPW_11301 [Legionella pneumophila 130b] Length = 414 Score = 95.1 bits (235), Expect = 1e-17, Method: Composition-based stats. Identities = 49/293 (16%), Positives = 107/293 (36%), Gaps = 20/293 (6%) Query: 51 LTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD 110 +G PK+ KK T+ LI+ + + + + II G + Sbjct: 77 RSGQAPKKIIQIQNEKKNNTMDQLINSWYQGYVIKNRK-KPLQIKQQIEADIIPLLGHLE 135 Query: 111 YRKITTKHIRSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER---PK 165 KI I + +++ ++ P A + L+S++ +F +A+ + + NP +++ Sbjct: 136 LEKIKPIDITNALDAIVKRGAPIHANRVLSSLKQVFNYAISRGSLETNPAANIKARNIGG 195 Query: 166 RKTEGIRPWTKEDMQQFKSFW-----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-N 219 + R ++++ F Q + A + +L +G+R ++ A H Sbjct: 196 IEKPSERFLALDEIKTLWQFLNSDQSKMSLQTKSAIKIILLTGVRTAEIRLAQWSHFDFA 255 Query: 220 NIFSIKTQ---KTGTIITVELPDGFMKLLAMTPIGKETFFINND---KQKMNATQFSIWF 273 N K G + + L + ++ G ++ F+ + + ++ Sbjct: 256 NSLWTIPSELTKGGITVKIHLSELTKSVIFKLNEGSDSPFVLSGLVPNKPLDENALPRAI 315 Query: 274 KAKATKAGVN-KSAHGVRKFSATISADAGA-TAHELMATYGWKTVDQAETYTK 324 + + G+ SAH +R+ AT + + G K TY K Sbjct: 316 RRIQKRVGIPEWSAHDLRRTFATQLGETLHIDPVVIEKCLGHKMPRIMATYNK 368 >gi|294776786|ref|ZP_06742249.1| site-specific recombinase, phage integrase family [Bacteroides vulgatus PC510] gi|294449262|gb|EFG17799.1| site-specific recombinase, phage integrase family [Bacteroides vulgatus PC510] Length = 404 Score = 95.1 bits (235), Expect = 1e-17, Method: Composition-based stats. Identities = 44/287 (15%), Positives = 97/287 (33%), Gaps = 37/287 (12%) Query: 72 KWLISEYRKSAH-WGSL-----AVNSRISFESYFDQIIR------KSGDFDYRKITTKHI 119 K L+ +R+ + +L + + +E + KS D +R I + + Sbjct: 108 KMLLERFREHNEKYRALIGKDVVEATVLRYERTVRYLEEFLKKEYKSSDIPFRNIDRQFV 167 Query: 120 RSG----VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175 + ++ +++L ++ + A+ +++ NP ++ + +T T Sbjct: 168 EKFEYFIKTEKNCAQNATVKYLKILKKIVTLALTNKWMTENPFTGIKFKQTQTN-RDFLT 226 Query: 176 KEDMQQFKSF---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-----IFSIKTQ 227 ++++ R F F SGL +D +H+ + + Sbjct: 227 EDELHAIMEKKFDIPRLEAVRDIFVFCCLSGLAFTDVQHLKPEHITKDINGEWWIRKARE 286 Query: 228 KTGTIITVELPDGFMKLL---AMTPI--GKETFFINNDKQKMNATQFSIWFKAKATKAGV 282 KT + + L D ++ P+ K Q+MN+ + K A G+ Sbjct: 287 KTNNMCHIPLLDIPAMIIEKYRKNPVCLQKNVVLPVPSNQRMNS-----YLKEIADVCGI 341 Query: 283 NK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 K + H R A + + + G + + Y K D Sbjct: 342 TKKLTTHCARHSFACFALANKVSMETIAKMLGHSDIRTTKIYAKVLD 388 >gi|307544706|ref|YP_003897185.1| phage-related integrase [Halomonas elongata DSM 2581] gi|307216730|emb|CBV42000.1| phage-related integrase [Halomonas elongata DSM 2581] Length = 336 Score = 95.1 bits (235), Expect = 1e-17, Method: Composition-based stats. Identities = 59/335 (17%), Positives = 118/335 (35%), Gaps = 33/335 (9%) Query: 17 RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76 +HG YY+R R +Y AL + + + L+ LI Sbjct: 11 KHG--AYYYRPRQHERAAFDNKSWFRLGESYTEALRAFADRMDIQTGDK-----LEELID 63 Query: 77 EYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES--RKHTPSSAI 134 Y +L+ +++ ++ ++ G I + + ++ R+ + A Sbjct: 64 RYTVEV-LPTLSYSAQNNYRQSLRRLRPTMGSNPVAVIVPRLVYQYMDEVQRRKSMHLAN 122 Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ--QFKSFWSEGSQP 192 Q L + + +AVR + +P + + K +G+R ++ + ++ + ++ Sbjct: 123 QDLKVLNRVLDFAVRWGVIDRHPIKGLVKAYGKRDGLRKGRDRYVEDWELAAWQTVATRQ 182 Query: 193 RLAFE-FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLA----M 247 + AF +L +G+R SD R H+ N +++ KTG I L D +A Sbjct: 183 QRAFAAIILLTGIRKSDCLRLMENHVGENTLTVQVAKTGNSIDFVLTDALRAAIAEARSC 242 Query: 248 TPIGKETFFINNDKQKM--------NATQFSIWFKAKATKA-GVNK--SAHGVRKFSATI 296 P N + KA +A + + H +R + Sbjct: 243 KPKLSLYLLPNRRGRCYVNEDGLTQTWDGRWRATMDKALEATDLEHAFTQHDLRAKVGSD 302 Query: 297 SADAGATAHELMATYGWKTVD-QAETYTKGADRIR 330 A+ A A EL +V + Y + I+ Sbjct: 303 -AENDARAQEL---LDHTSVAVTRQHYRRKRQAIK 333 >gi|255280908|ref|ZP_05345463.1| putative tyrosine recombinase XerC [Bryantella formatexigens DSM 14469] gi|255268356|gb|EET61561.1| putative tyrosine recombinase XerC [Bryantella formatexigens DSM 14469] Length = 352 Score = 95.1 bits (235), Expect = 1e-17, Method: Composition-based stats. Identities = 52/327 (15%), Positives = 109/327 (33%), Gaps = 39/327 (11%) Query: 41 STFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD 100 F Y A+ +T R I+ ++L+ E S + + D Sbjct: 28 PGFARDYFRAIEPTTSTRTRISYAYDIRVFFQFLLEE-NPSLRGKEMTDITLD----ILD 82 Query: 101 QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160 +I + + G+++ + + + ++R + + ++E + NP L Sbjct: 83 KIKPVDIEEYLEYLKVYQSEDGLKTNGE--RALKRKMVALRGFYAYYFKREMIKTNPTLL 140 Query: 161 VERPKRKTEGIRPWTKEDMQQFKS---------------FWSEGSQPRLAF-EFLLYSGL 204 V+ PK + I ++ +W + + LA LL +G+ Sbjct: 141 VDMPKIHDKAIVRLDTDETASLLDYIEHAGDSLSGQKKVYWEKTKRRDLALVTLLLGTGI 200 Query: 205 RCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLA--------MTPIGKE- 253 R S+ + + NN + +K G + V D K L +TP+ Sbjct: 201 RVSECVGLDIGDVDFKNNGIKV-VRKGGNEMVVYFGDEVEKALRDYLEERCGITPVAGSE 259 Query: 254 -TFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMAT 310 F++ ++++ K A + K + H +R T + + Sbjct: 260 NALFLSTQRKRIGVQAVENLVKKYARQITTTKKITPHKLRSTYGTSLYQETNDIYLVADV 319 Query: 311 YGWKTVDQA-ETYTKGADRIRLGIKNS 336 G K V+ + Y D+ R ++ Sbjct: 320 LGHKDVNTTKKHYAAMDDQRRRSAASA 346 >gi|298482697|ref|ZP_07000881.1| tyrosine type site-specific recombinase [Bacteroides sp. D22] gi|298271160|gb|EFI12737.1| tyrosine type site-specific recombinase [Bacteroides sp. D22] Length = 416 Score = 95.1 bits (235), Expect = 1e-17, Method: Composition-based stats. Identities = 36/226 (15%), Positives = 74/226 (32%), Gaps = 11/226 (4%) Query: 111 YRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170 +R+ + G + + ++A + + + K A Y+ I+ V+ + + Sbjct: 183 FRQFIMNAPQGGTKRGTISQNTAATYFSIFKAGLKQAFIDGYLTIDISAKVKGIQERESR 242 Query: 171 IRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ----NNIFSIKT 226 T E++ + + R A L +G+R D + ++ + Sbjct: 243 REYLTVEELNRLAQTPCDPLLKRAALFSAL-TGIRHCDIQKLKWSEVEMFNGGYRLNFTQ 301 Query: 227 QKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-- 284 QKT + + + + L G+ F K AG++K Sbjct: 302 QKTKGVEYMPISEQAYSLCGEQQEGELLVFAGLPDPSWINRP----VKRWVEAAGISKHI 357 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 + H R AT+ G + + G V + Y K D + Sbjct: 358 TFHCFRHSYATLQLAGGTDIYTVSKMLGHTNVKTTQVYAKVVDEKK 403 >gi|291009716|ref|ZP_06567689.1| phage integrase family site specific recombinase [Saccharopolyspora erythraea NRRL 2338] Length = 319 Score = 95.1 bits (235), Expect = 1e-17, Method: Composition-based stats. Identities = 48/298 (16%), Positives = 93/298 (31%), Gaps = 29/298 (9%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD-----------FDYRKITTKH 118 T + ++ +S G+ +R ++ Q+ R + D ++ H Sbjct: 16 TWAGYLRDWDRSLRSGNRPETTRYNYVLAAAQLARYLAEHAPDPEADAAAEDPAEVAKAH 75 Query: 119 IRSGVESRKHTPSSAIQFLT--SMRVLFKWA-VRQEYVAINPCLSVERPKRKTEGIRPWT 175 I + T S+A +++ LFKW + +E + +P V PK T+ + Sbjct: 76 IEAFQAWMIETRSAATAVNKHKALQQLFKWLMLDEEEIDRSPMERVRLPKAPTKLVPVLE 135 Query: 176 KEDMQQFKSFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ---------NNIF 222 +E + + + +G R ++ ++ + Sbjct: 136 EEATTRLLEVCKGKDFLSLRDQAIIRLFCNTGARLAEVAHLRLEDVDLKTESVTLYGKGG 195 Query: 223 SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK-QKMNATQFSIWFKAKATKAG 281 ++ + G L ++ + Q +NA I K +AG Sbjct: 196 KVRRVRMGARTARALSRYLRARAKRKGADLPNLWLADRGGQALNANGIKIRLKRLGQRAG 255 Query: 282 VNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRR 338 ++ AH R A AG +LM GW + Y A R R Sbjct: 256 LDHVHAHRWRHTYAHQWKRAGGDTGDLMLLLGWSSDAMPRHYGASAAAERAQESQVRM 313 >gi|167761886|ref|ZP_02434013.1| hypothetical protein BACSTE_00229 [Bacteroides stercoris ATCC 43183] gi|167700256|gb|EDS16835.1| hypothetical protein BACSTE_00229 [Bacteroides stercoris ATCC 43183] Length = 330 Score = 95.1 bits (235), Expect = 1e-17, Method: Composition-based stats. Identities = 35/282 (12%), Positives = 91/282 (32%), Gaps = 21/282 (7%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR----SGVESRKHT 129 L++ + + + + + + ++++ ITT IR E + + Sbjct: 55 LLNSFISAKKIEGCSDKTLAYYRNTIERLLVTL-SLAICHITTTDIRTYLSDYQEEHQSS 113 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 + F W ++Y+A +P + + K + + E ++Q + + Sbjct: 114 KVTIDNMRRIFSSFFAWLEDEDYIAKSPVRRIHKVKTDSLVKEVLSDEQLEQLRDSCTT- 172 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT----QKTGTIITVELPDG----F 241 + +FL +G+R + + + + F + K V Sbjct: 173 KRDLAIIDFLSSTGIRVGELVKLNREDID---FHERQCVVFGKGNKERIVYFNARTKLHL 229 Query: 242 MKLLAMTPIGKETFFINNDKQK--MNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISA 298 + L F++ + + I + + K H R+ AT++ Sbjct: 230 QQYLNGRTDDNPALFVSLHSPHTRLTISGVEIRIRKLGQSLSMPKVHPHKFRRTLATMAI 289 Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340 D G ++ G +D Y ++ + + + + + Sbjct: 290 DKGMPIEQVQRLLGHVRIDTTLHYA-IVNQNNVKLAHKKYLG 330 >gi|298292615|ref|YP_003694554.1| integrase family protein [Starkeya novella DSM 506] gi|296929126|gb|ADH89935.1| integrase family protein [Starkeya novella DSM 506] Length = 458 Score = 95.1 bits (235), Expect = 1e-17, Method: Composition-based stats. Identities = 53/306 (17%), Positives = 89/306 (29%), Gaps = 36/306 (11%) Query: 56 PKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT 115 K S T+ ++ Y ++ + + I K G ++T Sbjct: 93 AKSIKAGSDASPALTVDAILDRYFEARAAEGMKSIYDAKSRAGL-HIRPKLGKLRISELT 151 Query: 116 TKHIRSGVESRKHTPS-----------------------------SAIQFLTSMRVLFKW 146 IR ++ P +A + LT+++ W Sbjct: 152 VDKIRRWRDAMAAAPRKVRTGKHAAKPNLRPVDPNDPEATRRRRDTANRTLTTLKAALNW 211 Query: 147 AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRC 206 A Q V + + +P R T R D +Q + + R L +G R Sbjct: 212 ARDQRLVDDDTAWRLVKPYRGTTAARVRFLSDGEQQQLLDNAEGDVRNLIAAALLTGARF 271 Query: 207 SDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKL--LAMTPIGKETFFINNDKQ 262 + R V+ N I K+G V L G L L + + + Sbjct: 272 GELARLLVRDFDAANGSIFIAESKSGKARHVPLTTGGRALFSLLAGGRSGSAPMLTRNDE 331 Query: 263 KMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE- 320 + F A AG+ + + H +R A+ AGA + G E Sbjct: 332 AWRPATYQRAFHAALEAAGLSDITLHELRHSYASTMVRAGAPLMVVARALGHADTRMVEK 391 Query: 321 TYTKGA 326 Y A Sbjct: 392 HYAHLA 397 >gi|150007997|ref|YP_001302740.1| integrase [Parabacteroides distasonis ATCC 8503] gi|298378107|ref|ZP_06988045.1| site-specific recombinase, phage integrase family [Bacteroides sp. 3_1_19] gi|149936421|gb|ABR43118.1| integrase [Parabacteroides distasonis ATCC 8503] gi|298264989|gb|EFI06664.1| site-specific recombinase, phage integrase family [Bacteroides sp. 3_1_19] Length = 311 Score = 95.1 bits (235), Expect = 1e-17, Method: Composition-based stats. Identities = 48/284 (16%), Positives = 104/284 (36%), Gaps = 36/284 (12%) Query: 90 NSRISFESYFDQIIRKSG--DFDYRKITTKH---IRSGVESRKHTPSSAIQFLTSMRVLF 144 ++ S++ + G Y I +S + + + ++ ++ +R ++ Sbjct: 25 STAKSYQDALNSFKCFCGMEAIPYAYINRNRLLCYQSWLLDKGRSLNTVSTYMRRIRHIY 84 Query: 145 KWAVRQEYVAINP------CLSVERPKRKTEGIRPWTKEDMQQ-FKSFWSEGSQPRLAFE 197 AV P VE ++K +E +++ F + + S R+ Sbjct: 85 NLAVEANEAPFVPNLFKDVFTGVESKRKK-----ALPREMLERMFNAPLEDPSLRRVQLT 139 Query: 198 FLL---YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL----AMTPI 250 L +SG+ D +++++ I QK+G++I +E+P G ++LL A T Sbjct: 140 VRLMFAFSGIAFVDLTHLKWENIRDGILQYHRQKSGSLIQLEIPSGALRLLDELSACTAK 199 Query: 251 GKETFFINNDKQK----------MNATQFSIWFKAKATKAG--VNKSAHGVRKFSATISA 298 F ++ ++F+ K A G + +++ +R A+ Sbjct: 200 ESLYLFPFLSGRRTGEAAYKEYNRTLSRFNRDLKLLARSTGVTLPVTSYTIRHSFASFLK 259 Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342 + + + G K++ + Y K RL N SV Sbjct: 260 EQDVSIEVISELLGHKSIKTTQIYLKSFSLERLSTVNRNCFESV 303 >gi|89068699|ref|ZP_01156085.1| tyrosine recombinase [Oceanicola granulosus HTCC2516] gi|89045662|gb|EAR51724.1| tyrosine recombinase [Oceanicola granulosus HTCC2516] Length = 307 Score = 95.1 bits (235), Expect = 1e-17, Method: Composition-based stats. Identities = 38/246 (15%), Positives = 73/246 (29%), Gaps = 20/246 (8%) Query: 105 KSGDFDYRKITTKHIRSGVES---RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV 161 + G ++ +R+ + R + S + L++++ ++W +E LS Sbjct: 52 QQGLAPLARVGVSDMRAWMAHERGRGVSARSLARALSAVKGFYRWIAEREGFEPTAVLST 111 Query: 162 ERPKRKTEGIRPWTKEDMQQFKSFWSE-------GSQPRLAFEFLLYSGLRCSDSCRAGV 214 PK + + RP + Q ++ L GLR S++ Sbjct: 112 RSPKFQKKLPRPLAVDAAQAMIDRVELQAREGWVAARDVAVVTLLYGCGLRISEALGLTG 171 Query: 215 QHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPI-------GKETFFINNDKQKMNAT 267 + K G V + + F +N Sbjct: 172 AAVPLPEVVRIVGKGGKERVVPVIAPARDAVDAYARLCPHPLEPHLPLFRGVRGGALNPR 231 Query: 268 QFSIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 + + G+ +A H +R AT AG + G ++ + YT Sbjct: 232 AIQKVMEQARLQLGLPATATPHALRHSFATHLLGAGGDLRSIQELLGHASLSTTQAYT-A 290 Query: 326 ADRIRL 331 D RL Sbjct: 291 VDTARL 296 >gi|228920886|ref|ZP_04084225.1| Prophage LambdaBa04, site-specific recombinase, phage integrase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228838817|gb|EEM84119.1| Prophage LambdaBa04, site-specific recombinase, phage integrase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 378 Score = 95.1 bits (235), Expect = 1e-17, Method: Composition-based stats. Identities = 46/310 (14%), Positives = 97/310 (31%), Gaps = 48/310 (15%) Query: 84 WGSLAVNSRI-----SFESYFD----QIIRKSGDFDYRKITTKHIRSGVESRKHTP---S 131 W L + S+E I+ + I I+S K Sbjct: 69 WEKLKPLRKAELKITSYEKDMSLVRLYILPPFSYKKIKSIKPVMIQSYYAELKGKGLSNG 128 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-GS 190 + +R +FK AV E + N V++P+ + ++ W+ E+ +F + E Sbjct: 129 TISNIHRCLRCIFKHAVEWEIIHDNIMNKVKKPREEQGEMKTWSSEECNRFLQYLKEKNI 188 Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPI 250 + + F +Y+G+R + + + + I K+ L K + Sbjct: 189 KYHMFFLLAIYTGMRRGELLALTWKDIDFDNKRILVNKSLVKTEKGLFKAATKTKSSNRS 248 Query: 251 GKETFFINNDKQKMNATQFSIWFK-------------------------------AKATK 279 + F+ Q + + +F+ K Sbjct: 249 ISISSFVIEKLQSYYSYKKKEFFRWGIHLNEEAFIFTGNTIHSPLHIDAPHRFLNDHYKK 308 Query: 280 AGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSR 337 A V + H +R AT+ AG + G ++ + Y+ + + + Sbjct: 309 ADVPRIRIHDLRHTHATLMLQAGEHPKIVQDRLGHSSIQMTLDKYSHITQ--NMQQQAAE 366 Query: 338 RISSVVDSDD 347 S++ S++ Sbjct: 367 NFESIIKSNE 376 >gi|303245432|ref|ZP_07331716.1| integrase family protein [Desulfovibrio fructosovorans JJ] gi|302493281|gb|EFL53143.1| integrase family protein [Desulfovibrio fructosovorans JJ] Length = 339 Score = 95.1 bits (235), Expect = 1e-17, Method: Composition-based stats. Identities = 46/319 (14%), Positives = 97/319 (30%), Gaps = 17/319 (5%) Query: 17 RHGKIIYYFR-KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75 + G + + R + G + + K +++++ + TL + Sbjct: 6 KRGNLQWEARIRKRGYPTTCKTFDTKAEAEQWAKGVETEMSKGQFVSTKEAEGYTLGECL 65 Query: 76 SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQ 135 Y++ + N + R G I +K I R+ SA Sbjct: 66 DRYKE--EYLPRLKNPQSEIYRADRLKKRALGLRIMATIRSKDIADYRREREKEGVSANT 123 Query: 136 F---LTSMRVLFKWAV-RQEYVA-INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 L + LF +A + NP +PK R + + ++ Sbjct: 124 IRLELALLSRLFNFAKSDWGMESLTNPVQLAAKPKLPPGRERRLEQGEEEKLFEAIGNDF 183 Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMT 248 + + L + +R + + + + N ++ K GT TV L +++ Sbjct: 184 EFSAIIKIALETAMRRGEILKLTWKDVDLRNKAVFLQDTKNGTCRTVPLSKKAIEVFQGL 243 Query: 249 PIG-KETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADA-GATAH 305 F + S +AG+ + H +R + + + Sbjct: 244 HRHISGKVFPSCT----VPQSLSKKMAKACQRAGLADLRFHDLRHEATSRFFEHTDLDVM 299 Query: 306 ELMATYGWKTVDQAETYTK 324 E+ A G K++ YT Sbjct: 300 EIKAITGHKSLQMLARYTH 318 >gi|189463323|ref|ZP_03012108.1| hypothetical protein BACCOP_04040 [Bacteroides coprocola DSM 17136] gi|189429942|gb|EDU98926.1| hypothetical protein BACCOP_04040 [Bacteroides coprocola DSM 17136] Length = 420 Score = 95.1 bits (235), Expect = 1e-17, Method: Composition-based stats. Identities = 41/241 (17%), Positives = 84/241 (34%), Gaps = 10/241 (4%) Query: 110 DYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169 D + + G + + ++A + + ++ K A EY+ ++ V+ Sbjct: 182 DIKMFLLRAPMGGNKKGTISQNTASTYFSILKAGLKQAFVDEYLTVDISAKVKGITNIET 241 Query: 170 GIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSI- 224 T ++Q + + AF F + +GLR SD + + + +I Sbjct: 242 PRVALTMNEVQMLVDTPCKDDVLKRAFLFSILTGLRHSDIQALKWKQIQQTSKGTWQAIV 301 Query: 225 KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284 QKT + ++L P E A+ S KA +G+ K Sbjct: 302 IQQKTKRPDYKPVIQQALQLCGERPSNDEALVFEGLTD---ASWISRPLKAWIEASGIKK 358 Query: 285 --SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342 + H R A++ + G + + + G V + YT + + N+ I ++ Sbjct: 359 HITFHCGRHSYASLLLENGVDIYTIKSLMGHTNVKTTQIYTHIVNEQKEKAANTLHIENL 418 Query: 343 V 343 Sbjct: 419 A 419 >gi|170701053|ref|ZP_02892031.1| integrase family protein [Burkholderia ambifaria IOP40-10] gi|170134033|gb|EDT02383.1| integrase family protein [Burkholderia ambifaria IOP40-10] Length = 332 Score = 95.1 bits (235), Expect = 1e-17, Method: Composition-based stats. Identities = 44/291 (15%), Positives = 98/291 (33%), Gaps = 19/291 (6%) Query: 45 PAYMSALTGSTPKREYINSPRKKPTTLKWLISEY--RKSAHWGSLAVNSRISFESYFDQI 102 + A+ + ++++ + TTL L+ +Y R S +S Sbjct: 39 EDWARAVETEMRRGTFVDTAAARETTLGDLLQKYAERVSPT-KKSGAGEAKRIQSMLKWF 97 Query: 103 IRKSGDFDYRKITTKHIRSGVESR--KHTPSSAIQFLTSMRVLFKWA-VRQE-YVAINPC 158 + K IT + + R + S+ + L + +F A + + ++ +NP Sbjct: 98 LCKY---AVVNITPAVLAEWRDERLQSVSGSTVNRELNLLSHVFSTAMIEWDIHLPVNPV 154 Query: 159 LSVERPKRKTEGIRPWT--KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH 216 + RPK R +E + ++ + A + +G+R S+ + Sbjct: 155 SRIRRPKHNKPRNRRTEGGEESLLLYECRKARNKHLYPAVLLAIETGMRRSEVVGIEWPN 214 Query: 217 LQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFK 274 + + + K G V L + LA + + ++ Sbjct: 215 IDLKRRVLWLPDSKNGEGRAVALSTRAAQALAAIATDRNGPVF----PGLTVDAIKCAYR 270 Query: 275 AKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 +A ++ H +R + + + G E+ + G KT+ + YT Sbjct: 271 RARKRAKIDGLRFHDLRHEATSRLFEKGLNPMEVASITGHKTLSMLQRYTH 321 >gi|319938811|ref|ZP_08013175.1| phage integrase family Site-specific recombinase [Streptococcus anginosus 1_2_62CV] gi|319811861|gb|EFW08127.1| phage integrase family Site-specific recombinase [Streptococcus anginosus 1_2_62CV] Length = 385 Score = 95.1 bits (235), Expect = 1e-17, Method: Composition-based stats. Identities = 54/350 (15%), Positives = 108/350 (30%), Gaps = 47/350 (13%) Query: 20 KIIYYFRKGHGRRIRLPYPHESTFIPA--YMSALTGSTPKREYINSPRKKPTTLKWLISE 77 K+ Y R G+R + A Y + + + R + E Sbjct: 18 KVRIY-RVIDGKRQDFFKSGFKSLREARQYEAMIYHKKASGDLSGLLRASERRFDEVFEE 76 Query: 78 YRKSAHWGSLAVNSRISFESYF--DQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQ 135 + K+ + + + I+ G+ KIT H + + + T + Q Sbjct: 77 WFKT--YQNTVERTTSVRTDDLFRIHILPVLGNMKISKITPWHCQDFITEKGQTFRNIKQ 134 Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRK-TEGIRPWTKEDMQQFKS--FWSEGSQP 192 + +F +A++ + + NP PKR+ + ++ E++ +F + E + Sbjct: 135 VKSYTSQVFDFALKMKLITDNPMKQTILPKRERKKSDNFFSVEELHEFLAIIKAEEPYKN 194 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK-----TGTII-----------TVE 236 F L YSGLR + + + + K G + + Sbjct: 195 YALFRLLAYSGLRKGELYSLRWSDIDFDNQLLSISKNLGRIKGKAVEKSTKNRFSIRQIP 254 Query: 237 LPDG----FMKLLAMTPIGKETF-------------FINNDKQ--KMNATQFSIWFKAKA 277 L + + K F++ D + + + K Sbjct: 255 LDTETVSILKEWKQKSRREKGQLSVTPLIGSDYMFTFVDRDGKIEPLYQDYINSVLKRII 314 Query: 278 TKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKG 325 K G+ K + HG R AT+ + G G + +TY+ Sbjct: 315 RKHGLKKITPHGFRHTHATLMIEVGVDPVNAAKRLGHASSQMTLDTYSHS 364 >gi|221369889|ref|YP_002520985.1| Phage integrase [Rhodobacter sphaeroides KD131] gi|221162941|gb|ACM03912.1| Phage integrase [Rhodobacter sphaeroides KD131] Length = 434 Score = 95.1 bits (235), Expect = 1e-17, Method: Composition-based stats. Identities = 49/298 (16%), Positives = 93/298 (31%), Gaps = 39/298 (13%) Query: 62 NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS-GDFDYRKITTKHIR 120 S R++ + LI Y K H LA S +S +++ G +IT + Sbjct: 101 RSRRREAPRFQDLIDRYLKE-HVPRLAPVSAADQKSMLAKLVAPYWGRKLVTEITKPDVE 159 Query: 121 SGVESR----------------------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPC 158 + K TP A + +R +F A+ + NP Sbjct: 160 KLLAQIAEGRARPSKAKPNNRARKLQGPKPTPVRANRVGEVLRKMFNLAIEWGWRTDNPA 219 Query: 159 LSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA--FEFLLYSGLRCSDSCRAGVQH 216 R R +K+++ + R A + +G R + ++ + Sbjct: 220 NGFFRRIENPRE-RFLSKDEIDRLAKALDAAEDQRAAGIIRICMLTGARVGEVRQSRFEQ 278 Query: 217 LQNNIFSI----KTQKTGTIITVELPDGFMKLLA----MTPIGKETFFINN-DKQKMNA- 266 T K + V + + ++ + P G F + Q + Sbjct: 279 FDLEHCLWSKPAATTKQRRVHRVPISEDVSAIVRQRRLLVPKGSPWLFPGDVPGQPVKEI 338 Query: 267 TQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 +F I + +A GV H +R A++ GA+ + G + + Y Sbjct: 339 RRFWIRIQKEAQIEGV--RIHDLRHTFASLLVSGGASLEMIGKLLGHTQMQTTQRYAH 394 >gi|268611842|ref|ZP_06145569.1| integrase family protein [Ruminococcus flavefaciens FD-1] Length = 404 Score = 95.1 bits (235), Expect = 1e-17, Method: Composition-based stats. Identities = 50/309 (16%), Positives = 106/309 (34%), Gaps = 52/309 (16%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYF---DQIIRKSGDFDYRKITTK----HIRSGV 123 L LI+ Y ++ +++ S S++S +Q+ G +T + + + + Sbjct: 89 LDNLINTYIETV--KKVSIRS-TSYDSVLVSANQVNEHLGYLSISNLTPEIIQTDLINKM 145 Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR---KTEGIRPWTKEDMQ 180 + + + + +AV ++Y+ NPC+ V+ P + + + R +++Q Sbjct: 146 IELDYAYGTIHKAYVILNECLNYAVFKDYITKNPCMGVKLPSKDNFEKKERRFLNDDEIQ 205 Query: 181 QFKSFWSEGSQPRLA--------FEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIK----- 225 FK+ +LY+GLR + + + + I S+ Sbjct: 206 TFKAQACVSQSNFNIPKYVYGNIICLILYTGLRVGELSALKWKDIDFQHKILSVNKAVVV 265 Query: 226 -----------------TQKTGTIITVELPDGFMKLLAMTPI----GKETFFINNDKQKM 264 T K+G + L +++L + F +N KQ Sbjct: 266 VYDYSAKPKKRTLTVQDTTKSGKPRVIPLNQKAIQILETQRSLFGGDDDCFIVNGTKQIP 325 Query: 265 NATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAET 321 + T + + A A + H +R A+ + G + G +V T Sbjct: 326 DKTVVANSYSKIARAAKIPDPSGIHTLRHTFASSAIRKGVDIKVVSEILGHASVTFTYNT 385 Query: 322 YTKGADRIR 330 Y D + Sbjct: 386 YVHIIDEQK 394 >gi|256393898|ref|YP_003115462.1| integrase family protein [Catenulispora acidiphila DSM 44928] gi|256360124|gb|ACU73621.1| integrase family protein [Catenulispora acidiphila DSM 44928] Length = 354 Score = 95.1 bits (235), Expect = 1e-17, Method: Composition-based stats. Identities = 43/222 (19%), Positives = 81/222 (36%), Gaps = 23/222 (10%) Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINP------CLSVERPKRKTEGIRPWTKE 177 + + P++ + ++++R + +AV Y + +P L + R RK++ + P +E Sbjct: 111 DEGRARPATLARKISAVRNFYAYAVDSGYTSSSPVPIKDKALHLPRVSRKSQTLGPDREE 170 Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL---QNNIFSIKTQKTGTIIT 234 ++ G + LLY GLR S+ C V+ L + + +K G Sbjct: 171 SAAMLEAAAQRGVRDEAVVAVLLYQGLRVSELCGINVEDLSSQRGHRVVRLRRKGGEEQD 230 Query: 235 VELPDGFMKLLAMTPIGK------------ETFFINNDKQKMNATQFSIWFKAKATKAGV 282 + L + F+ + ++ Q ++ A AGV Sbjct: 231 QAIAPPAAGCLDAWLAERARDSAFGAVPASGPVFVGPEGARLTRYQVEWIVESCARAAGV 290 Query: 283 NK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 K S H +R T+ DAG ++ G E Y Sbjct: 291 EKKISPHSLRHACTTMLLDAGVPLRDIQVYMGHANSATTERY 332 >gi|228471614|ref|ZP_04056388.1| tyrosine recombinase XerC [Capnocytophaga gingivalis ATCC 33624] gi|228277033|gb|EEK15719.1| tyrosine recombinase XerC [Capnocytophaga gingivalis ATCC 33624] Length = 296 Score = 95.1 bits (235), Expect = 1e-17, Method: Composition-based stats. Identities = 36/218 (16%), Positives = 76/218 (34%), Gaps = 15/218 (6%) Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 + R T S + L S++ + + VR + +P + K + P++ ++ Sbjct: 58 LVERGITNRSINRKLASLKAYYAFLVRTLAIKASPFVPHIPLKAPKKISIPFSSREIDSV 117 Query: 183 KS---FWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE 236 S +Q R E +G+R ++ + + + ++K K + Sbjct: 118 LSQPIVEDSYTQMRNKTIIELFYATGMRRAELIDLKISDIDFSQKTVKVLGKRNKERIIP 177 Query: 237 L-------PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKA--GVNKSAH 287 L + ++ L + F+ + +KM + + A + KS H Sbjct: 178 LIHTVVETLEKYLTLRKGVETNEVFLFLTDKGKKMYPKLVYNIINSYFSTATTKLKKSPH 237 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 +R AT D GA + + G + + YT Sbjct: 238 VLRHSFATHLLDNGADLNAVKELLGHAGLAATQVYTHS 275 >gi|224825788|ref|ZP_03698892.1| integrase family protein [Lutiella nitroferrum 2002] gi|224602012|gb|EEG08191.1| integrase family protein [Lutiella nitroferrum 2002] Length = 342 Score = 95.1 bits (235), Expect = 1e-17, Method: Composition-based stats. Identities = 44/289 (15%), Positives = 84/289 (29%), Gaps = 45/289 (15%) Query: 86 SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG-----VESRKHTPSSAIQFLTSM 140 LA S ++ + D ++ + + + K P S ++ + Sbjct: 17 GLADRSVRAYRDILVRYEAWLDGRDPLEVNGDQLLAFCGPYLHKQLKLAPVSRTPYVACI 76 Query: 141 RVLFKWAVR-QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRLA 195 L+++ + +P +V P++ + R T + ++ EG + Sbjct: 77 HELYRYLSAVRGLTGRDPSQAVPYPRKPGKLPRVATLDTAERLMWAPDFNTFEGVRDAAM 136 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNN------IFSIKT-QKTGTIITVELP---------- 238 LL GLR S +L ++K +K G + +P Sbjct: 137 LALLLGCGLRVSGLAALNEGNLTTQVVDGEPRLALKPIEKGGKERLIPVPREADLLLRVY 196 Query: 239 ---DGFMKLLAMTPIGKETFFINND------------KQKMNATQFSIWFKAKATKAGVN 283 + TP G FI +++ + + AG+ Sbjct: 197 MEHPDLEGIDRSTPSGDRVLFITTRNRRCPAHEYYGERRRFSTRGVFAMIQRHGKAAGIP 256 Query: 284 ---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 + H +R T A+ E G K YT A R Sbjct: 257 EEQLNPHALRHLFGTELAEGDIDLLERQNLMGHKDPKSTAIYTHLAFRK 305 >gi|302349105|ref|YP_003816743.1| Tyrosine recombinase XerC/XerD [Acidilobus saccharovorans 345-15] gi|302329517|gb|ADL19712.1| Tyrosine recombinase XerC/XerD [Acidilobus saccharovorans 345-15] Length = 324 Score = 95.1 bits (235), Expect = 2e-17, Method: Composition-based stats. Identities = 42/288 (14%), Positives = 89/288 (30%), Gaps = 28/288 (9%) Query: 55 TPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD-FDYRK 113 +R P ++ + + + + + S+ + G + Sbjct: 2 PARRIQQPQPEVLSKSVADAVESFLSALEASGASKLTLKSYRAALQSFASHVGPSRPVSQ 61 Query: 114 ITTKHIRSGVESRKHT---------PSSAIQFLTS-MRVLFKWAVRQEYVAINPCLSVER 163 ++ S + + SS + + T +R +W P Sbjct: 62 LSQADYLSWLSEMRSKGPVGPRGGRWSSTVHYYTIFVRRFLQWLGISGL----PAE---- 113 Query: 164 PKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS 223 P+R++E + ++++ S + L + SGLR + + Sbjct: 114 PQRRSEFSGALSWKEVEAMMSKARD-LYDLLILSLMAESGLRAREVVNLTWGDIDLAKGE 172 Query: 224 IKTQKT-GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282 + + G V L +L++ P G N K++ K+ A +AG+ Sbjct: 173 ARVRGKYGKERLVVLGQVARSVLSVLPPGGP----NERVVKLSYQAIYDRVKSLARRAGI 228 Query: 283 NKS---AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 + S H +R AT + G + L G + + Y D Sbjct: 229 DVSKVRPHVLRHTFATEALRRGMSLPVLQRLLGHSDIRITQVYLHLLD 276 >gi|284989441|ref|YP_003407995.1| integrase family protein [Geodermatophilus obscurus DSM 43160] gi|284062686|gb|ADB73624.1| integrase family protein [Geodermatophilus obscurus DSM 43160] Length = 370 Score = 95.1 bits (235), Expect = 2e-17, Method: Composition-based stats. Identities = 54/331 (16%), Positives = 107/331 (32%), Gaps = 37/331 (11%) Query: 16 TRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75 R K + ++R G++ H + + +++ R K T +W Sbjct: 4 KRGDKWVGFYRDVAGKQHTNGNFHRKRDADLWEQEQKAAIRNDTWVDPSRSKMTVGQW-- 61 Query: 76 SEYRKSAHWGS----LAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKH-- 128 S W + L + S+ S +++ +I + + V + + Sbjct: 62 -----SETWIAGRVHLKPKTLSSYRSLLATRVLPTWNTVPLTRIRHSDVVAWVAAMRAEL 116 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 + S Q + + AVR +A NP V P+ R T + + Sbjct: 117 SASRTRQAYHLLSSMLDDAVRDNRLARNPATGVGLPRLPKSDRRYLTHQQLADLADGCGP 176 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ---------------NNIFSIKTQKTGTII 233 RL Y+GLR + + ++ + T KT Sbjct: 177 H---RLMVLVAGYTGLRWGELTGLRARRVESLRGRIDVVEAVTEVDGGMVFGTPKTHQHR 233 Query: 234 TVELPDGFMKLLAMTPIGK---ETFFINNDKQKMNATQFSI-WFKAKATKAGV-NKSAHG 288 +V +P + L GK + F + + F WF A G+ + H Sbjct: 234 SVVVPRFIREDLGRQLAGKAPADLVFASRAGTPLRVQNFRRDWFDRAAHAVGLSGLTPHE 293 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQA 319 +R +A+++ +GA+ + + G + Sbjct: 294 LRHTAASLAIASGASVKGVQSMLGHASAQMT 324 >gi|157149671|ref|YP_001449679.1| phage integrase family site specific recombinase [Streptococcus gordonii str. Challis substr. CH1] gi|157074465|gb|ABV09148.1| site-specific recombinase, phage integrase family [Streptococcus gordonii str. Challis substr. CH1] gi|327460667|gb|EGF07002.1| phage integrase family site-specific recombinase [Streptococcus sanguinis SK1] Length = 384 Score = 95.1 bits (235), Expect = 2e-17, Method: Composition-based stats. Identities = 62/366 (16%), Positives = 117/366 (31%), Gaps = 57/366 (15%) Query: 11 VTKERTRHGKIIYYF-------RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS 63 + K +T+ G I+YY G +R Y + L Sbjct: 3 IHKYKTKKG-ILYYVSFYIGLDAYGKKKRHLKRGFKTKKEAKLYEARLEAGVVAPTVSTD 61 Query: 64 PRKKPTTLKWL----ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119 T K L + Y + + + ++ + + I GD +I+ Sbjct: 62 KPNPKVTYKELYQEWFNAYVGTVEETT-SSQTKNIYRIHILPI---FGDKFIDQISPLDC 117 Query: 120 RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK-RKTEGIRPWTKED 178 ++ + + T + Q + +F +A+ Y+ NP +V PK +KT W+ E+ Sbjct: 118 QNFITQKSQTFKNIKQIKSYTSKIFDFAINMNYIDRNPMKNVIMPKIKKTRSDNFWSLEE 177 Query: 179 MQQFKSFWS--EGSQPRLAFEFLLYSGLRCSDSCRAGVQH----------------LQNN 220 + F E + F L +SGLR + + Sbjct: 178 LHHFLDIVKETEPFKHFALFRLLAFSGLRKGELYALKWADINFDSNLLNIDKSLGRIDGK 237 Query: 221 IFSIKTQKTGTIITVELPDGFMKLLA-----------MTPIGK--------ETFFINNDK 261 T+ ++ T+ L D + L+ P+ K ++ +NDK Sbjct: 238 AIEKSTKNESSVRTIYLDDETIDLIKQWRNFYLKEQSQLPLTKLNISDEYMFSYISSNDK 297 Query: 262 -QKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319 + ++A + K + S HG R AT+ ++ G G + Sbjct: 298 IEPLHADYINNVLNRIIKKHKLKPISPHGFRHTHATLMSEIGIDPSNTSKRLGHASSQVT 357 Query: 320 -ETYTK 324 + YT Sbjct: 358 LDVYTH 363 >gi|291526089|emb|CBK91676.1| Site-specific recombinase XerD [Eubacterium rectale DSM 17629] gi|291527174|emb|CBK92760.1| Site-specific recombinase XerD [Eubacterium rectale M104/1] Length = 336 Score = 95.1 bits (235), Expect = 2e-17, Method: Composition-based stats. Identities = 38/264 (14%), Positives = 86/264 (32%), Gaps = 21/264 (7%) Query: 88 AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS----SAIQFLTSMRVL 143 + + + ++ ++ + RKITT+ IR + + + + ++ Sbjct: 75 SERTIKYYRETVQHLLSQT-ETSVRKITTEEIREYLSDYQKLNNCSNVTIDNVRRNISSF 133 Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSG 203 F W ++Y+ +P + + K KT + E +++ + +E + + L +G Sbjct: 134 FSWLEEEDYILKSPMRRIHKIKTKTVVKSVISDEGIEKLRDNCNE-KRDLAIIDLLYSTG 192 Query: 204 LRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDG----FMKLLAMTPIGKETFFIN 258 +R + + + I K V + + F+ Sbjct: 193 IRVGELVNLNIDDIDLEGRECIVYGKGDKERRVYFDAKAKVHLKDYINTRTDKNKALFVT 252 Query: 259 NDKQK--MNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKT 315 D + + I + K + + H R+ AT + D G ++ G Sbjct: 253 LDAPHDRLKISGVEIRLRKLGRKLSLERIHPHKFRRSMATRAIDKGMPIEQVQKILGHSQ 312 Query: 316 VDQAETY-------TKGADRIRLG 332 +D Y K A + L Sbjct: 313 IDTTMQYAMVNQNNVKTAHQKYLA 336 >gi|260577378|ref|ZP_05845348.1| integrase family protein [Rhodobacter sp. SW2] gi|259020414|gb|EEW23740.1| integrase family protein [Rhodobacter sp. SW2] Length = 423 Score = 95.1 bits (235), Expect = 2e-17, Method: Composition-based stats. Identities = 41/258 (15%), Positives = 80/258 (31%), Gaps = 15/258 (5%) Query: 82 AHWGS--LAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139 WG+ + ++ + D + G K + ++ K TP A + Sbjct: 134 PAWGNKLVTEITKSDVAKFLDFVAE--GRPRPSKEKPNNRARKLQGHKPTPIRANRTGEV 191 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA--FE 197 +R +F AV E+ A NP R + R +++ + + R A Sbjct: 192 LRKMFTLAVEWEWRADNPAQGFHRRIEEARE-RFLGPDELARIAAVLDSAEDQRAASIIR 250 Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIK----TQKTGTIITVELPDGFMKLLA----MTP 249 + +G R + A + + T K I V + + ++ + P Sbjct: 251 ICMLTGARVGEVRTARFEQFNLDYVVWSKPASTTKQRKIHRVPISQEVVAIVRQRQLVVP 310 Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMA 309 G F + W K + + H +R A++ GA+ + Sbjct: 311 KGNPWLFPGETVGQPVREIRRFWAKVQKDADLPDLHIHDLRHTFASLLVSGGASLEMIGK 370 Query: 310 TYGWKTVDQAETYTKGAD 327 G + + Y D Sbjct: 371 LLGHSQMQTTQRYAHLMD 388 >gi|310287230|ref|YP_003938488.1| Integrase/recombinase (XerD/RipX family) [Bifidobacterium bifidum S17] gi|309251166|gb|ADO52914.1| Integrase/recombinase (XerD/RipX family) [Bifidobacterium bifidum S17] Length = 377 Score = 95.1 bits (235), Expect = 2e-17, Method: Composition-based stats. Identities = 53/354 (14%), Positives = 106/354 (29%), Gaps = 65/354 (18%) Query: 56 PKREYINSPRKKPTT---LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR-KSGDFDY 111 K EY S R T LK + + L ++ ++ S + +I+ G Sbjct: 17 KKLEYERSGRMPSQTTPYLKDWLDRWLDEIVKPRLRPSTLATYRSVVEALIKPAIGGVRL 76 Query: 112 RKITTKHIRSGVE------------SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCL 159 ++ KH R E R + ++A ++ AVR+ + NPC Sbjct: 77 GRLEPKHFRMMEEYITKGDDTCDPPRRPRSSATAGSAWRTLHKALDDAVREGIIESNPCD 136 Query: 160 SVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSC--------- 210 E P+ + T Q + ++ L + +G+R + Sbjct: 137 RAESPRVVYTERKILTPAQAGQLINAEND-VMWHLMWRLAYETGMRQGERLGLTNSEIQL 195 Query: 211 ---------------------------RAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243 G +H+ + + + + LP+ Sbjct: 196 IDNVICIVVEWQLKVYNNVKDARDIPSSLGARHVMGKAYLVPPKTNAGRRVIPLPESLAA 255 Query: 244 LLAMTPIG------KETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSAT 295 L + G + F+ D +N + +K + G+ H R +AT Sbjct: 256 ELGLYIKGTGRVKPDDLVFVQEDGAPLNRMIETRAWKKALQRVGLPGDFVPHSARHTAAT 315 Query: 296 ISADAGATAHELMATYGWKTVDQAET-YTK--GADRIRLGIKNSRRISSVVDSD 346 A G + + G + YT AD + + + ++ ++ Sbjct: 316 AMAQLGMSDKVRESIMGHSDISVTNRVYTHVGTADASK-AVNGVETLLALEPAN 368 >gi|298528848|ref|ZP_07016251.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1] gi|298529857|ref|ZP_07017259.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1] gi|298509231|gb|EFI33135.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1] gi|298510284|gb|EFI34187.1| integrase family protein [Desulfonatronospira thiodismutans ASO3-1] Length = 394 Score = 95.1 bits (235), Expect = 2e-17, Method: Composition-based stats. Identities = 36/236 (15%), Positives = 82/236 (34%), Gaps = 20/236 (8%) Query: 109 FDYRKITTKHIRSGVESR--KHTPSSAIQFLTSMRVLFKWA-VRQEYVAINPCLSVERP- 164 + + + H+ + + R K+ P + I + +R ++ + ++ + + ++ P Sbjct: 144 MELKDLDVLHMDAFLAERNRKYAPETRIHERSGLRGFLRYLYLERQILKKDLSALIQGPP 203 Query: 165 -KRKTEGIRPWTKEDMQQFK----SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL-- 217 ++ R T E ++ G + GLR + CR + + Sbjct: 204 VYAQSRPPRFLTLEQIKTLFQSIDKDRPGGLRSYAMIHLAYSLGLRPGEICRVTLDDILF 263 Query: 218 QNNIFSIKTQKTGTIITVELPDGFMKLL-------AMTPIGKETFFINNDK--QKMNATQ 268 ++ + + +K + + LP G ++ L G N + Sbjct: 264 RDKLIYLPDRKNSSPAKLPLPQGALRALAAYLAWNRPMDPGHRFLLCNTRTPYGPLTPLT 323 Query: 269 FSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 S A +AG+ SA+ +R A A A+ E+ G + ++ Y Sbjct: 324 VSQNISACFRRAGIKGSAYWLRHTYAQNLLQAEASIFEIKEMLGHDIIKTSKRYLH 379 >gi|227327444|ref|ZP_03831468.1| phage integrase family protein [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 337 Score = 95.1 bits (235), Expect = 2e-17, Method: Composition-based stats. Identities = 52/315 (16%), Positives = 95/315 (30%), Gaps = 37/315 (11%) Query: 29 HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLA 88 G+RIR F + + + TLK L+ + SAH +L Sbjct: 21 KGKRIR------KKFATKGEAIAFEQYAAQNPWQEEKGDRRTLKELVDAWY-SAHGITLK 73 Query: 89 VNSRIS------FESYFDQIIRKSGDFDYRKITTKHIRSGVES----RKHTPSSAIQFLT 138 + +E + + R + + K ++ G ++ TP + L Sbjct: 74 DGLKRQSAMHHAYECMGEPLARDFEAQMFSRYREKRLKGGYARSNRVKEVTPRTLNLELA 133 Query: 139 SMRVLFKWAVRQE-YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL--A 195 R +F R + NP ++ + + + T++ + F S P L Sbjct: 134 YFRAMFNELTRLGEWKGENPLKNMRPFRTEEAEMAYLTQDQIALFLSECQRHEHPHLQAV 193 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF 255 + L +G R S++ L + K V + + L P K Sbjct: 194 VKICLSTGARWSEAENLRRSQLSPYKITFTYTKGRRNRAVPISKALYESL---PENKGRL 250 Query: 256 FINNDKQKMNATQFSIWFKAKATKAGVNKSA----HGVRKFSATISADAGATAHELMATY 311 F + F++ + G+ A H +R A+ G L Sbjct: 251 FTDCYG----------AFRSALERTGIELPAGQLTHVLRHTFASHFMMKGGNILVLQRVL 300 Query: 312 GWKTVDQAETYTKGA 326 G + Y A Sbjct: 301 GHTDIKMTMRYAHFA 315 >gi|121611464|ref|YP_999271.1| phage integrase family protein [Verminephrobacter eiseniae EF01-2] gi|121556104|gb|ABM60253.1| phage integrase family protein [Verminephrobacter eiseniae EF01-2] Length = 378 Score = 95.1 bits (235), Expect = 2e-17, Method: Composition-based stats. Identities = 44/295 (14%), Positives = 81/295 (27%), Gaps = 46/295 (15%) Query: 75 ISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESR---KH 128 + Y + LA S + +++ R + ++T HIR V Sbjct: 23 VQRYLEHLRVEKRLAARSLTLYRLDLEKLARFAAGLSLPLLQLTDAHIRRFVAQMHSAGR 82 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 + L+ R F WA RQ + NP L + PK + + + F Sbjct: 83 SGRGIALILSGWRGFFIWAGRQGLIGRNPVLGIRAPKSPKPLPKALGVDQAMRLADFDGA 142 Query: 189 GS-----------QPRLAFEFLLYSGLRCSDSCRA-------------GVQHLQNNIFSI 224 + E L SGLR + G LQ + Sbjct: 143 AGAATEADIWLQIRDAAMAELLYGSGLRAGELAGLDAVPNADTERQGRGWVDLQAGEVHV 202 Query: 225 KTQKTGTIITVELPDGFMKLLAM-------------TPIGKETFFINNDKQKMNATQFSI 271 K +V + L F+ ++ Sbjct: 203 -LGKGSKRRSVPMGRAASAALRAWLALRAKPFGAAGAARLDAALFVGRRGARLTTLSIWR 261 Query: 272 WFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 + ++ +AG+ H +R A+ + + G ++ + YT+ Sbjct: 262 RLRQRSQRAGLPSPVHPHMLRHSFASHLLQSSGDLRAVQELLGHASITSTQVYTR 316 >gi|297539373|ref|YP_003675142.1| integrase family protein [Methylotenera sp. 301] gi|297258720|gb|ADI30565.1| integrase family protein [Methylotenera sp. 301] Length = 339 Score = 95.1 bits (235), Expect = 2e-17, Method: Composition-based stats. Identities = 47/320 (14%), Positives = 99/320 (30%), Gaps = 22/320 (6%) Query: 16 TRHGKIIYYFRKGH-GRRIR-LPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73 R ++ R H G+R++ ++ Y + L S ++E + K+ Sbjct: 5 KRKDSTCWWVRFTHKGKRVQESTGTNDRQKAQEYEAKLVNSLWEQERLGIKPKRQ--WND 62 Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP--- 130 + Y + S++S + + + + + I + +++++ Sbjct: 63 AVVRYVDE----TQHKASQVSDLYHLRWLDKYLNGVELQVINRDFLEKILKAKQAEGVAN 118 Query: 131 SSAIQFLTSMRVLFKWAV-RQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 S+ + L +R L + A E++ P V + +R T+ + + Sbjct: 119 STVNRVLEVVRGLLRKACNEWEWIDRVPA--VRMLPEPKKRVRWITRNEADRLVEALPSH 176 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ----NNIFSIKTQKTGTIITVELPDGFMKLL 245 F L +GLR S+ + K I V L + L Sbjct: 177 LAD--IVRFSLETGLRRSNVTGLQWSQVDLVRRMAWIHPDQAKARKAIPVPLSTVAVLTL 234 Query: 246 AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATA 304 +T + W + + G+ H +R A+ G Sbjct: 235 RKQIGKHQTHVFTYKGNTITQVNTKTW-RKVLKEVGIESFRWHDLRHTWASWHIQEGTPQ 293 Query: 305 HELMATYGWKTVDQAETYTK 324 H L GW + + + Y Sbjct: 294 HILQELGGWSSPEMVQKYAH 313 >gi|254281766|ref|ZP_04956734.1| site-specific recombinase, phage integrase family [gamma proteobacterium NOR51-B] gi|219677969|gb|EED34318.1| site-specific recombinase, phage integrase family [gamma proteobacterium NOR51-B] Length = 296 Score = 95.1 bits (235), Expect = 2e-17, Method: Composition-based stats. Identities = 42/269 (15%), Positives = 91/269 (33%), Gaps = 31/269 (11%) Query: 99 FDQIIRKSGDFDYRKITTKHI------RSGVESRKHTPSSA---------------IQFL 137 + + GD IT + + K SA +F+ Sbjct: 25 IQFWVEEFGDQPIDAITEDAVDQALVRLAKRGKLKAGRGSARRAVPTGKPLAGSTINRFI 84 Query: 138 TSMRVLFKWAVRQEYVAIN---PCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ--P 192 +++ +FK+A R + + P +E+ + + + E++ + + Q Sbjct: 85 STLSGIFKYARRVRALPRSHTPPTRGIEKAPEPVDPEKYFRPEEVDKLMAVARVVDQKWR 144 Query: 193 RLAFEFLLY--SGLRCSDSCRAGVQHLQNNI--FSIKTQKTGTIITVELPDGFMKLLAMT 248 +L +L +GLR + + + + S+ T K G L D + L Sbjct: 145 KLPALIILGFHTGLRVGNLLDLKWEDVDLDERTLSVATTKNGRPHIAALTDRCITELQKL 204 Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHEL 307 P G + + + + ++ +AG ++ H +R + A AG + ++ Sbjct: 205 PAGSPSDLVFRSYRTDKPFNYRDLWQKVCDEAGFEGRTFHWLRHGCGSALASAGVSQAQI 264 Query: 308 MATYGWKTVDQAETYTKGADRIRLGIKNS 336 M G +T+ + Y R + Sbjct: 265 MQVMGHRTLVASARYMHSNVEDRRAVVGR 293 >gi|210615472|ref|ZP_03290599.1| hypothetical protein CLONEX_02815 [Clostridium nexile DSM 1787] gi|210150321|gb|EEA81330.1| hypothetical protein CLONEX_02815 [Clostridium nexile DSM 1787] Length = 387 Score = 95.1 bits (235), Expect = 2e-17, Method: Composition-based stats. Identities = 40/273 (14%), Positives = 83/273 (30%), Gaps = 45/273 (16%) Query: 90 NSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVR 149 +++ S+ +++ +I + G + ++ K T ++ + + AV Sbjct: 93 STKGSYITHYKRIQEELGWRKLTSLNLIVMQEAFNKLK-TDNARKNSKKILVDMLNRAVD 151 Query: 150 QEYVAINPCLSVERP--KRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCS 207 + + N + K + + R T + + F G+ F L +GLR Sbjct: 152 TDLLVKNVAKQINTVIAKEEKKERRVLTIRETELFLEQAK-GTFYENLFILALETGLRVG 210 Query: 208 DSCRAGVQHLQ--NNIFSIKT-----QKTGTII-------------TVELPDGFMKLLAM 247 + + + + +K K G + T+ L + L Sbjct: 211 ELSALQWEDIDFKKKVIHVKHTLCYFSKNGKYVFEMHDTKTNNGKRTIPLTAKAINSLKC 270 Query: 248 TPIGKETFFI------------------NNDKQKMNATQFSIWFKAKATKAGVNKSA--- 286 + K+ + N Q+ Q KAG++ S Sbjct: 271 QKLQKQEIILKGKTAKEEFQNLVFVTKNNQPTQQFLINQCMQLVIQNMNKAGIDFSPFTL 330 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQA 319 H +R AT + + G L G T+ Sbjct: 331 HTLRHTFATRAIECGMNPKTLQKLLGHGTLQMT 363 >gi|171741671|ref|ZP_02917478.1| hypothetical protein BIFDEN_00757 [Bifidobacterium dentium ATCC 27678] gi|283455017|ref|YP_003359581.1| phage integrase [Bifidobacterium dentium Bd1] gi|171277285|gb|EDT44946.1| hypothetical protein BIFDEN_00757 [Bifidobacterium dentium ATCC 27678] gi|283101651|gb|ADB08757.1| phage integrase [Bifidobacterium dentium Bd1] Length = 367 Score = 95.1 bits (235), Expect = 2e-17, Method: Composition-based stats. Identities = 51/339 (15%), Positives = 107/339 (31%), Gaps = 39/339 (11%) Query: 11 VTKERTRHGKIIYY--FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68 + T+ G Y +R + Y++ +T +YI+ P Sbjct: 3 IYSYNTKSGDKRYRVTYRDPDHSQRTKRGFRRRKDAQDYLARMTTYIADNDYID-----P 57 Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFD-----QIIRKSGDFDYRKITTKHIRSGV 123 K L+ ++ + + + + + G+ + I I++ V Sbjct: 58 NAGKTLVCQF-ADTWLKGKKNVVKPKYYADLECSWRVHVCNAWGNREIASIRHSEIQTWV 116 Query: 124 ESRKHTPSSAIQFLT--SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 S+ I ++ + AVR + NP + P+++ + T + Sbjct: 117 SELAKKRSATITIRAHGVLKGVLDLAVRDGSIRRNPADGCQLPRKQRKERTYLTPAQV-- 174 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-------------- 227 + G+ L + GLR ++ V+H+ ++ + Sbjct: 175 IDLAHAAGTYQALILTLG-FCGLRWGEAAALRVKHVDTQNNRLRVRLSWVRSGKKHFEGA 233 Query: 228 -KTGTIITVELPDGFMKLLAMTPIGK---ETFFINNDKQKMNATQFSI--WFKAKATKAG 281 KT + V +PD M + GK + F + W+ +G Sbjct: 234 PKTWEVRDVPVPDQVMSAIKEQCEGKGPEDLVFTAPSGGHLREQSAKNHGWYARALRDSG 293 Query: 282 VN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319 V + H +R +A+I+ +GA + G K Sbjct: 294 VPTLTCHDLRHTAASIAISSGANVKAVQRMLGHKNAAMT 332 >gi|323170034|gb|EFZ55690.1| integrase [Escherichia coli LT-68] Length = 285 Score = 95.1 bits (235), Expect = 2e-17, Method: Composition-based stats. Identities = 40/255 (15%), Positives = 81/255 (31%), Gaps = 10/255 (3%) Query: 74 LISEYRK-SAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132 LI + K N+R+ + + + T+ +R + PS+ Sbjct: 23 LIDLWWKYHGQLMKSGHNTRLKLLRLSEAMDDPCVHKLNTTMLTE-LRVSRIEQGIQPST 81 Query: 133 AIQFLTSMRVLFKWAVRQEY-VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191 + + ++ +F + + + NP ++ K + +K + Q +E Sbjct: 82 INREIGALSAMFTALISSGHFLNDNPVQGLKGMKVNEREMGYLSKSECVQLLDALAENPD 141 Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIG 251 RLA E LL +G R + + + + + K TV + + + + G Sbjct: 142 ERLAVEILLSTGARWGEVAALEQRRVLHCRITFSKTKNSKNRTVPISESLFE--KIKKRG 199 Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATY 311 + F D + K A ++ H +R A+ G L Sbjct: 200 GKLVFPTLD-----YSLVRDVIKTVAPDVPDGQAVHALRHTFASHFMMNGGNILTLQKIL 254 Query: 312 GWKTVDQAETYTKGA 326 G + Y A Sbjct: 255 GHAKIQTTMIYAHLA 269 >gi|157960209|ref|YP_001500243.1| tyrosine recombinase XerC [Shewanella pealeana ATCC 700345] gi|157845209|gb|ABV85708.1| tyrosine recombinase XerC [Shewanella pealeana ATCC 700345] Length = 304 Score = 95.1 bits (235), Expect = 2e-17, Method: Composition-based stats. Identities = 34/272 (12%), Positives = 94/272 (34%), Gaps = 21/272 (7%) Query: 71 LKWL--ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD----YRKITTKHIRSGVE 124 ++WL Y ++ ++ + ++ ++ + + D + + + + + + Sbjct: 10 VRWLTDFERYLRTER--QVSAYTVRNYLFELKRVEKLFSETDSWLSLQHESLQAMLAKLH 67 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR---PWTKEDMQQ 181 + +P S L+S++ +++ +R++ + +NP +S+ PK+ + + + Sbjct: 68 RKGLSPRSLSLTLSSLKQFYEFLLREQQIKVNPAISLTAPKQGKPLPKNMDVDSVSHLLD 127 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG 240 + + E SGLR ++ V +Q + +K K V + Sbjct: 128 LDGDDPLSLRDKAIMELFYSSGLRLAELAALNVGDIQFSQAQVKVLGKGSKERIVPIGKL 187 Query: 241 FMKLL-------AMTPIGKETFFINNDKQKMNATQFSIWFKAK--ATKAGVNKSAHGVRK 291 + + + F+ +++ G+ H +R Sbjct: 188 ALTAINQWLDIKRDIACEDDALFVTAKGKRLAHRSIQARLAKWGQEQAIGIKVHPHKLRH 247 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYT 323 AT ++ A + G + + YT Sbjct: 248 SFATHMLESSADLRAVQELLGHANLSTTQVYT 279 >gi|221200783|ref|ZP_03573824.1| phage integrase [Burkholderia multivorans CGD2M] gi|221206979|ref|ZP_03579990.1| phage integrase [Burkholderia multivorans CGD2] gi|221173053|gb|EEE05489.1| phage integrase [Burkholderia multivorans CGD2] gi|221179355|gb|EEE11761.1| phage integrase [Burkholderia multivorans CGD2M] Length = 403 Score = 95.1 bits (235), Expect = 2e-17, Method: Composition-based stats. Identities = 51/305 (16%), Positives = 98/305 (32%), Gaps = 25/305 (8%) Query: 44 IPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-I 102 + A + +K T+ L ++ + +++ +++ ++ + Sbjct: 73 MAQDWLAEVRRGGDPGGDRAEARKAPTIAELCKKFMEDYSRKRNKPSTQDGYQAVINRNV 132 Query: 103 IRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVA--INPCLS 160 I G ++ I +E + P+ A + +R +F + Y NPC Sbjct: 133 IPLLGRKKVHEVKRPDIAGLMEKLSYKPTEANKTFGVLRKMFNLSEVWGYRPDGTNPCRH 192 Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP----------RLAFEFLLYSGLRCSDSC 210 V E E ++ F+ ++ RL FEF R S+ C Sbjct: 193 VPMYPPGKETRLIVDDELVRVFRQLEKIEAEELENYVIPLSIRLQFEFA----GRRSEIC 248 Query: 211 RAGVQHLQNN--IFSIKTQKTGTIITVELPDGFMKLLAMTPI-GKETFFINNDKQKMNAT 267 + + KTG + + + +LL+ P + + K Sbjct: 249 KLEWDWVDLEHRRVVWPDSKTGGMSK-PMSEEAYRLLSTAPRLEGCRYVLPKPKDPTKHL 307 Query: 268 QFSI----WFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 + W + + HG+R SAT A++G M KTV Q Y Sbjct: 308 TYGQHYCGWCRVLKAADVPHVGTHGIRHRSATDIANSGVPIKVGMELTQHKTVAQFMHYV 367 Query: 324 KGADR 328 D+ Sbjct: 368 HTEDK 372 >gi|163839844|ref|YP_001624249.1| XerC/XerD family integrase [Renibacterium salmoninarum ATCC 33209] gi|162953320|gb|ABY22835.1| integrase, XerC/XerD family [Renibacterium salmoninarum ATCC 33209] Length = 308 Score = 95.1 bits (235), Expect = 2e-17, Method: Composition-based stats. Identities = 44/274 (16%), Positives = 90/274 (32%), Gaps = 28/274 (10%) Query: 85 GSLAVNSRISFESY---FDQIIRKSGDFDYRKITTKHIRSGVESRKH---TPSSAIQFLT 138 + + ++ ++ + +G +I IR + + S+ + Sbjct: 25 RARSEHTIRAYSADVESLMYYAIAAGVRSIDEIDLATIREWLGEQSSDGLARSTLARRAA 84 Query: 139 SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS--------FWSEGS 190 S R L WA+R+E ++++P L ++ PKR+ + M + + + Sbjct: 85 STRTLMSWALREELISVDPTLRLKAPKRQKTLPGVLQQNQMARMLADLASAAEEGSAAAL 144 Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLLAM-T 248 + E L +GLR + + L + K +V + L Sbjct: 145 RDLAIVELLYAAGLRVGELAGLDLDDLDFERRTVVVLGKGNKERSVPFGQPAARALQAWL 204 Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-----------KSAHGVRKFSATIS 297 G+ F+ + + ++ V S H +R +AT Sbjct: 205 QTGRPAFYREGSGAALFLGTRGGRIDQRQIRSVVGSRFVALGDTSATSPHALRHTAATHL 264 Query: 298 ADAGATAHELMATYGWKTVDQAETYTK-GADRIR 330 D GA + G ++ + YT DR+R Sbjct: 265 LDGGADLRAVQEILGHSSLATTQIYTHVSVDRLR 298 >gi|62550837|emb|CAH64760.1| site-specific recombinase [uncultured bacterium] gi|194337964|emb|CAQ51376.1| InH class 1 integrase [Salmonella enterica subsp. enterica serovar Typhimurium] Length = 337 Score = 95.1 bits (235), Expect = 2e-17, Method: Composition-based stats. Identities = 40/301 (13%), Positives = 90/301 (29%), Gaps = 52/301 (17%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS-S 132 ++ + R+ + ++ + ++ + IR G + + + + + + S Sbjct: 16 VLDQLRERIRYLHYSLRTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192 ++ L + V+ + + RP+ T +++ + F EG Sbjct: 76 VSTHRQALAALLFFYVKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILGFL-EGEH- 133 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPI 250 RL + L +G+R S+ + V+ + ++ K + LP+ L Sbjct: 134 RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLS 193 Query: 251 GKETFFINN---------------------------------------------DKQKMN 265 +++ + + M Sbjct: 194 RARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMY 253 Query: 266 ATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 F FK +AG+ K + H +R AT +G + G V YT Sbjct: 254 DQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYT 313 Query: 324 K 324 Sbjct: 314 H 314 >gi|46198918|ref|YP_004585.1| DNA integration/recombination/invertion protein [Thermus thermophilus HB27] gi|46196542|gb|AAS80958.1| DNA integration/recombination/invertion protein [Thermus thermophilus HB27] Length = 313 Score = 95.1 bits (235), Expect = 2e-17, Method: Composition-based stats. Identities = 46/242 (19%), Positives = 89/242 (36%), Gaps = 20/242 (8%) Query: 114 ITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVR-QEYVAINPCLSVERPKRKTEGI- 171 + + +R+ + + P FL ++R +++ + A +P + RPK Sbjct: 70 PSPEAVRALLLRERWAPRRVQGFLAALRSYYRYLREVKGEAASDPTEGIGRPKAGRRLPL 129 Query: 172 RPWTKE---DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS----I 224 P +E ++ F+ LA FL +GLR S++ +++ S Sbjct: 130 HPGPEELKRFLEAFREEKEAALLEALAR-FLYGTGLRISEALSLKGRNVVLEGGSPVAVR 188 Query: 225 KTQKTGTIITVELPDGFMKLLAMTPI--GKETFFINNDKQKMNATQFSIW----FKAKAT 278 K V L ++L G F + ++ + W F+ A Sbjct: 189 VVGKGNKERLVPLSKTAREVLEALGRLQGNVNIFTFSQGRRKGHVPSARWVEAKFREAAL 248 Query: 279 KAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335 +AG++ + H +R AT+ + G + G +++ + Y A R RL Sbjct: 249 RAGLDPRRFTPHKLRHAYATLLVERGVELDAVKDLLGHESIATTQIYLH-ASRERLREAA 307 Query: 336 SR 337 SR Sbjct: 308 SR 309 >gi|296444774|ref|ZP_06886737.1| integrase family protein [Methylosinus trichosporium OB3b] gi|296257722|gb|EFH04786.1| integrase family protein [Methylosinus trichosporium OB3b] Length = 424 Score = 94.7 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 56/374 (14%), Positives = 120/374 (32%), Gaps = 51/374 (13%) Query: 19 GKIIYY--FRKGHGRRIRLPYPHE-----STFIPAYMSALTGSTPKREYI--NSPRKKPT 69 GK Y+ +R G R R+ M+AL G + + S R+ Sbjct: 37 GKRTYFADYRNADGSRKRMTLGRHSVITCEEARKLAMAALGGVVKGADPLTERSSRRAAL 96 Query: 70 TLKWLISEYRKSAH-------WGSLAVNSR--ISFESYFDQIIRKSGDFDYRKITTKHIR 120 T+ L Y ++A + S + I+ G ++T ++ Sbjct: 97 TVSDLCDLYLEAADKGLVTTRFHKPKRASTLAVDRGRIGRHIVPLIGSKKADRLTRADVQ 156 Query: 121 SGVESRKHT-------------------PSSAIQFLTSMRVLFKWAVRQEYV-AINPCLS 160 + +A + + ++ WA R+ +V +P Sbjct: 157 RMTDDIAAGKTAGTFKTKLRGKAVVTGGAGTARRVVELFGGIWTWAERRGHVVGRSPTHG 216 Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR----LAFEFLLYSGLRCSDSCRAGVQH 216 VE K + R + ++ + + E + A +L +G R + Sbjct: 217 VETQKGDPK-DRILSPAELARLGAVLKEKEEALPFAVAAVRLILLTGARREEIVGLRWSE 275 Query: 217 LQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFK 274 + ++ KTG + + + +L+ P + F N K A Sbjct: 276 FDAAGSCLRLEQTKTGRSMR-PIGSPVVAILSALPRDENEFVFPNRSGKRPAD-LKKRIA 333 Query: 275 AKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGADRIRLG 332 AGV + +H R+ +T + + G + + G + A Y + D Sbjct: 334 ELFDAAGVDDARSHDCRRTFSTTADELGYSEATAGSIIGHASRGVTARHYIRRPDAAL-- 391 Query: 333 IKNSRRISSVVDSD 346 ++ + +++ +++ Sbjct: 392 VEAADKVAKLIERR 405 >gi|15889883|ref|NP_355564.1| site-specific tyrosine recombinase XerC [Agrobacterium tumefaciens str. C58] gi|34222928|sp|Q8UC70|XERC_AGRT5 RecName: Full=Tyrosine recombinase xerC gi|15157830|gb|AAK88349.1| site-specific recombinase [Agrobacterium tumefaciens str. C58] Length = 315 Score = 94.7 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 49/275 (17%), Positives = 85/275 (30%), Gaps = 29/275 (10%) Query: 85 GSLAVNSRISFESYFD--------QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI-- 134 LA N+ ++E I R + D + +R+ + +R+ + A Sbjct: 31 RRLADNTVEAYERDTRQFLRFLTGYIGRPAAIRDIADLRPVDLRAFLANRRKEGAGARSL 90 Query: 135 -QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM-------QQFKSFW 186 + L +R L ++ V ++ PK+ +P T Q Sbjct: 91 GRHLAGLRSLLHHLQKKGLVNAAGATAMRAPKQPKSLPKPLTDRQALKITTAEAQLNEEP 150 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTIITVELP------- 238 ++ L GLR S++ S++ T K V L Sbjct: 151 WIAARNAAVLSLLYGCGLRISEALGLTPADFPPGTRSLRITGKGNKTRIVPLLAVVTEAV 210 Query: 239 DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATI 296 D + KL E F+ K+ + G+ N + H +R AT Sbjct: 211 DTYRKLCPYALAADEPMFLGARGGKLQPAIIQREMQKLRGAFGLPENATPHALRHSFATH 270 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 G + G ++ + YT G D RL Sbjct: 271 LLAGGGDLRTIQELLGHASLSTTQVYT-GVDTARL 304 >gi|254777686|ref|ZP_05219202.1| phage integrase family protein [Mycobacterium avium subsp. avium ATCC 25291] Length = 361 Score = 94.7 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 65/360 (18%), Positives = 109/360 (30%), Gaps = 41/360 (11%) Query: 25 FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL-ISEYRKS-A 82 + GRR P + +L + R+ P + L Y K+ Sbjct: 2 YHGPDGRRYTAPKTFLTEKDARGWLSLRQAEIIRKAWVPPEADEQPVPKLTFETYSKTWM 61 Query: 83 HWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESR-KHTPSSAIQFLTSM 140 L +R + D I+ G IT +R+ +TP+ + Sbjct: 62 AQRDLKDRTRQHYAKLLGDHIVPTFGGLPIASITADDVRAWHAKLGANTPTLRAHCYGLL 121 Query: 141 RVLFKWAVRQEYVAINPC--LSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEF 198 R + A+ + +NPC +R + IRP T +++ E + R Sbjct: 122 RTIMGTALSDGKIKVNPCVIRGAGSARRVHK-IRPATLDEIATIAEEMPE--RYRAMVLL 178 Query: 199 LLYSGLRCSDSCRAGVQHL-----------------------QNNIFSIKTQKTGT-IIT 234 + LR + + + F I T K+ Sbjct: 179 AAWCALRFGELTELRRRDIIIVDADDPDDTYGVVRVERAVVRVEQGFQITTPKSDAGRRD 238 Query: 235 VELPDGFMKLLA------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAH 287 VE+P + + + P F + F + A + H Sbjct: 239 VEIPPHLLPAIRDHLDRFVEPDKDALLFPAVHGGHLAPASLYRQFYRARSVAKRDDLRWH 298 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD-RIRLGIKNSRRISSVVDSD 346 +R A ++A GAT ELMA G T A Y A R R + ++ +V S Sbjct: 299 DLRHSGAVLAAATGATLAELMARLGHSTPQAAMRYQHAAQGRDRQIARLLSKLVAVEPSP 358 >gi|115334655|ref|YP_764501.1| DNA integration/recombination protein [Geobacillus phage GBSV1] gi|155042957|ref|YP_001425624.1| DNA integration/recombination /inversion [Bacillus virus 1] gi|297528601|ref|YP_003669876.1| integrase [Geobacillus sp. C56-T3] gi|84688605|gb|ABC61301.1| DNA integration/recombination protein [Geobacillus phage GBSV1] gi|115529861|gb|ABJ09640.1| DNA integration/recombination /inversion [Bacillus virus 1] gi|297251853|gb|ADI25299.1| integrase family protein [Geobacillus sp. C56-T3] Length = 394 Score = 94.7 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 48/309 (15%), Positives = 103/309 (33%), Gaps = 54/309 (17%) Query: 88 AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSM----RVL 143 +++ + + ++R G+ + +T K + + K A L + R++ Sbjct: 84 KISTIRARKHELGHLMRYFGNLKLKDVTRKMYQDMLLDLKKK-GYADNTLDGIHTTGRMI 142 Query: 144 FKWAVRQEYVAINPCLSVERPKRKT---------EGIRPWTKEDMQQFKSFWSEG--SQP 192 FK A+ E + NP + PK+K + ++ K ++ F E + Sbjct: 143 FKKAMELELINSNPTEYAKVPKQKKTVEDIESGNKDMKFLEKHELALFLKTAQEHGLAMD 202 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-------------------GTII 233 + F L Y+G+R + + + +I KT G+I Sbjct: 203 YVVFSTLAYTGMRLGELLALQWKDINFKEHTIAITKTLYSPRNNERYYQLLPPKTQGSIR 262 Query: 234 TVELPDGFMKLLAMTPIGKETF--------------FINNDKQKMNATQFSIWFKAKATK 279 T+++ + LL + F + I K Sbjct: 263 TIKVDPNIISLLKKHKAEQNEIKLRMGELYHDLGFVFARPSGFPEVPKKIEIRMKRLLRI 322 Query: 280 AGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIRLGIKNS 336 A ++K + H +R ++ +AG E+ G ++ Y L + S Sbjct: 323 ANIHKHVTPHSLRHTHTSLLIEAGVGIKEIQQRLGHADIETTMNIYAHLT--KDLEERAS 380 Query: 337 RRISSVVDS 345 ++ S ++ + Sbjct: 381 QKFSELMSN 389 >gi|260868071|ref|YP_003234473.1| putative integrase [Escherichia coli O111:H- str. 11128] gi|257764427|dbj|BAI35922.1| putative integrase [Escherichia coli O111:H- str. 11128] Length = 426 Score = 94.7 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 45/317 (14%), Positives = 97/317 (30%), Gaps = 64/317 (20%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK-ITTKHIRSGVESR-- 126 T+K L ++ +A S ++ + I+ G+ + I + + + Sbjct: 80 TIKELAEKFLALKE-NEVAKTSLNTYRAVIKNILSIIGEKNLASSINKEKLLEVRKELLT 138 Query: 127 --------------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172 + + ++T++ +F++ V Y+A NP + K Sbjct: 139 GYQIPKSNYIVTQPGRSAVTVNNYMTNLNAVFQFGVDNGYLADNPFKGISPLKESRTIPD 198 Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIK----- 225 P ++E+ + Q + + +Y+G+R + C G + + N I+ Sbjct: 199 PLSREEFIRLIDAC-RNQQAKNLWCVSVYTGVRPGELCALGWEDIDLKNGTMMIRRNLAK 257 Query: 226 --------TQKTGTIITV--ELPDGFMKLLAMTPIGKETFF------------------- 256 T +I + D + +T + KE Sbjct: 258 DRFTVPKTQAGTNRVIHLIKPAIDALRSQMTLTRLSKEHIIDVHLKEYGRTEKQKCTFVF 317 Query: 257 -------INNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELM 308 + N + A +AG+ ++ ++ R A S AGA + Sbjct: 318 QPEVSARVKNYGDHFTVDSIRQMWDAAIKRAGLRHRKSYQSRHTYACWSLTAGANPAFIA 377 Query: 309 ATYGWKTVDQA-ETYTK 324 G + Y K Sbjct: 378 NQMGHADAQMVFQVYGK 394 >gi|256377530|ref|YP_003101190.1| integrase family protein [Actinosynnema mirum DSM 43827] gi|255921833|gb|ACU37344.1| integrase family protein [Actinosynnema mirum DSM 43827] Length = 324 Score = 94.7 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 49/309 (15%), Positives = 103/309 (33%), Gaps = 42/309 (13%) Query: 76 SEYRKSAHWGSLAVNSRISFESYF--------DQIIRKSGDFDYRKITTKHIRSGVESRK 127 + ++ + ++ ++ + + R+ G+ +T H+RS Sbjct: 8 EAFFQARRPRKDSPHTTAAYRRDLAGVNALLGEVVGREVGELRVEDLTGAHLRSAFGVFA 67 Query: 128 HT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED------- 178 + SS ++ ++ + V ++ V NP +V RPK +P ED Sbjct: 68 DSHAKSSVLRAWSTWNQFLTFLVAEDLVPGNPMGAVARPKTPPLVPKPLRGEDTPERLLA 127 Query: 179 ---MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT---QKTGTI 232 K+ + L L +GLR + + + + K Sbjct: 128 AAAEGARKARDPWPERDVLVLALGLVAGLRSVEMRTLTLASVVGRSGERRLHVLGKGNRD 187 Query: 233 ITVELPDG--------FMKLLAMTPIGK----ETFFINNDKQKMNATQFSIWFKAKATKA 280 +V + P G+ + + + ++ A Sbjct: 188 RSVPIEPAMERVVDEYLASCRKRFPQGRFDRGSALLRDRHGEPIGRGGLEYLVRSCFRWA 247 Query: 281 GVN------KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG-ADRIRLGI 333 G++ + H +R AT A+ GATA E+MA G ++ ++ Y + A R + Sbjct: 248 GLHDRVPSGANLHALRHTFATRLAEDGATASEIMALLGHASLATSQNYIEATAREQRSAV 307 Query: 334 KNSRRISSV 342 +R +S+ Sbjct: 308 AGNRTYASL 316 >gi|229545565|ref|ZP_04434290.1| bacteriophage integrase [Enterococcus faecalis TX1322] gi|256853373|ref|ZP_05558743.1| site-specific recombinase [Enterococcus faecalis T8] gi|307291735|ref|ZP_07571607.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX0411] gi|229309305|gb|EEN75292.1| bacteriophage integrase [Enterococcus faecalis TX1322] gi|256711832|gb|EEU26870.1| site-specific recombinase [Enterococcus faecalis T8] gi|306497187|gb|EFM66732.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX0411] Length = 392 Score = 94.7 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 62/392 (15%), Positives = 123/392 (31%), Gaps = 72/392 (18%) Query: 1 MTPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY 60 M R +T GKI +YF+ R E+ AY+ K++ Sbjct: 1 MENMSRFKKHITAT----GKITWYFQAFRTTRRGFNSKREAQL--AYLEMEKQHRNKQKR 54 Query: 61 INS-PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119 + S + + KW EY +S + V + E + R G ++++ + Sbjct: 55 LASNDKFSVVSQKWF--EYYRSLN--EQKVATYDKREEQVKILNRWIGGKKLSSLSSEEL 110 Query: 120 RSGVESRKHT----------PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK-- 167 + + K +S + + ++F + ++ + NP V+ PK + Sbjct: 111 QKFLFILKEKGIDGVNVGYAKNSLQSLVQVLNMVFNYCKKKNLINENPMKFVKMPKYQLS 170 Query: 168 ---------TEGIRPWTKEDMQQFKSF--WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH 216 + + T ++++ F ++ E + F L Y+G S++ Q Sbjct: 171 LKDLKESVNSLEDKFLTVDELRAFLNYGIVYEELPMSVLFHVLFYTGCCVSEALALQPQD 230 Query: 217 LQNNI-----------------FSIKTQKT-GTIITVELPD-------GFMKLLAMTPIG 251 + F I+T KT + V + + +L T Sbjct: 231 IDFERNEILFYKQTAVKGKSKDFRIETTKTVSSARRVPVTPLVMEKLQELIDVLNKTKRN 290 Query: 252 -----KETFFI-----NNDKQKMNATQFSIWFKAKATKAGVNKSAHG--VRKFSATISAD 299 ET+ + K + G+NK H R A++ A+ Sbjct: 291 SNFVVDETYLFVYLDPGKRGVPYRREYVNDHVKRCVERCGINKDFHTHLARHTMASLVAE 350 Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRL 331 + L G ++ Y +L Sbjct: 351 Y-CSWDVLKDRLGHTDSTTSKIYRHLTSTEKL 381 >gi|237719564|ref|ZP_04550045.1| integrase [Bacteroides sp. 2_2_4] gi|253565904|ref|ZP_04843358.1| integrase [Bacteroides sp. 3_2_5] gi|254882935|ref|ZP_05255645.1| integrase [Bacteroides sp. 4_3_47FAA] gi|282859997|ref|ZP_06269081.1| site-specific recombinase, phage integrase family [Prevotella bivia JCVIHMP010] gi|282877475|ref|ZP_06286295.1| site-specific recombinase, phage integrase family [Prevotella buccalis ATCC 35310] gi|282880866|ref|ZP_06289559.1| site-specific recombinase, phage integrase family [Prevotella timonensis CRIS 5C-B1] gi|294777530|ref|ZP_06742981.1| site-specific recombinase, phage integrase family [Bacteroides vulgatus PC510] gi|301312112|ref|ZP_07218033.1| mobilizable transposon, int protein [Bacteroides sp. 20_3] gi|304382591|ref|ZP_07365085.1| integrase [Prevotella marshii DSM 16973] gi|317478196|ref|ZP_07937364.1| phage integrase [Bacteroides sp. 4_1_36] gi|317504497|ref|ZP_07962474.1| mobilizable transposon integrase [Prevotella salivae DSM 15606] gi|5453489|gb|AAB53787.2| integrase [Bacteroides fragilis] gi|229451424|gb|EEO57215.1| integrase [Bacteroides sp. 2_2_4] gi|251945008|gb|EES85446.1| integrase [Bacteroides sp. 3_2_5] gi|254835728|gb|EET16037.1| integrase [Bacteroides sp. 4_3_47FAA] gi|281300399|gb|EFA92748.1| site-specific recombinase, phage integrase family [Prevotella buccalis ATCC 35310] gi|281305248|gb|EFA97315.1| site-specific recombinase, phage integrase family [Prevotella timonensis CRIS 5C-B1] gi|282587203|gb|EFB92424.1| site-specific recombinase, phage integrase family [Prevotella bivia JCVIHMP010] gi|294448598|gb|EFG17147.1| site-specific recombinase, phage integrase family [Bacteroides vulgatus PC510] gi|300829900|gb|EFK60549.1| mobilizable transposon, int protein [Bacteroides sp. 20_3] gi|304336216|gb|EFM02458.1| integrase [Prevotella marshii DSM 16973] gi|315664395|gb|EFV04085.1| mobilizable transposon integrase [Prevotella salivae DSM 15606] gi|316905648|gb|EFV27434.1| phage integrase [Bacteroides sp. 4_1_36] Length = 372 Score = 94.7 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 54/265 (20%), Positives = 95/265 (35%), Gaps = 26/265 (9%) Query: 84 WGSLAVNSRISFESYFDQI-IRKSGDFDYRKITTKHIRSGVESRKHTP-----------S 131 + LA I ++ + +G + ++ R +E P + Sbjct: 100 FKGLADRKNIKWQHVYKHFQRFVNGKCTFEEVDVDLCRKFMEYLLDAPQSIHTNQKLHIN 159 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191 SA + ++ R + A R + NP ++R + ++E++ + E Sbjct: 160 SAAGYWSTFRAVLHTAYRDRKIKENPNGFLDRIECIPTIREHLSQEELIRLAETPCEEEV 219 Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQ---NNIFSIKT--QKTGTIITVELPDGFMKLLA 246 + AF F +GLR SD + Q +Q N + T QKT I+ + D LL Sbjct: 220 LKKAFLFACLTGLRKSDIRQLTWQQIQPYTNGRMFVTTRMQKTKEIVHNPISDEAYGLLG 279 Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATA 304 E + K KM W T AG+ K + H R ++ + G Sbjct: 280 E---RGEGLIFEDFKDKMLQGPLQRWL----TAAGITKKITFHCTRHSFGSLHVEMGTDM 332 Query: 305 HELMATYGWKTVDQAETYTKGADRI 329 + A G K + + Y+K A + Sbjct: 333 AVIQAYLGHKNITTTQIYSKIAAQQ 357 >gi|331673161|ref|ZP_08373929.1| putative lambdoid prophage Qin defective integrase [Escherichia coli TA280] gi|331069359|gb|EGI40746.1| putative lambdoid prophage Qin defective integrase [Escherichia coli TA280] Length = 431 Score = 94.7 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 44/317 (13%), Positives = 96/317 (30%), Gaps = 64/317 (20%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK-ITTKHIRSGVESR-- 126 T+K L ++ +A S ++ + I+ G+ + I + + + Sbjct: 85 TIKELAEKFLALKE-TEVAKTSLNTYRAVIKNILSIIGEKNLASSINKEKLLEVRKELLT 143 Query: 127 --------------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172 + + ++T++ +F++ V Y+ NP + K Sbjct: 144 GYQIPKSNYIVTQPGRSAVTVNNYMTNLNAVFQFGVDNGYLPDNPFKGISPLKESRTIPD 203 Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIK----- 225 P ++E+ + Q + + +Y+G+R + C G + + N I+ Sbjct: 204 PLSREEFIRLIDAC-RNQQAKNLWCVSVYTGVRPGELCALGWEDIDLKNGTMMIRRNLAK 262 Query: 226 --------TQKTGTIITV--ELPDGFMKLLAMTPIGKETFF------------------- 256 T +I + D + +T + KE Sbjct: 263 DRFTVPKTQAGTNRVIHLIKPAIDALRSQMTLTRLSKEHIIDVHLREYGRTEKQKCTFVF 322 Query: 257 -------INNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELM 308 + N + A +AG+ ++ ++ R A S AGA + Sbjct: 323 QPEVSARVKNYGDHFTVDSIRQMWDAAIKRAGLRHRKSYQSRHTYACWSLTAGANPAFIA 382 Query: 309 ATYGWKTVDQA-ETYTK 324 G + Y K Sbjct: 383 NQMGHADAQMVFQVYGK 399 >gi|295110203|emb|CBL24156.1| Site-specific recombinase XerD [Ruminococcus obeum A2-162] Length = 322 Score = 94.7 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 36/248 (14%), Positives = 83/248 (33%), Gaps = 14/248 (5%) Query: 88 AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS----SAIQFLTSMRVL 143 + + ++ + ++ + RKITT+ IR+ + + + ++ Sbjct: 61 SDRTLQYYKVTVEHLLSQI-KTSVRKITTEEIRAYLADYQKNSKCSNVTIDNIRRNISSF 119 Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSG 203 F W ++Y+ +P + + + KT T E +++ + E + + L +G Sbjct: 120 FSWLEEEDYILKSPMRRIHKIRTKTVVKSVITDEGIEKLRDNCME-IRDLAIIDLLYSTG 178 Query: 204 LRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDG----FMKLLAMTPIGKETFFIN 258 +R + + + + K V M+ +A F+ Sbjct: 179 IRVGELVNLNIDDIDLEGRECVVYGKGDKERRVYFDAKSKVHLMRYIAERKDANPALFVT 238 Query: 259 NDKQK--MNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKT 315 D + + I + K + + H R+ AT + D G ++ G Sbjct: 239 LDAPHDRLKISGVEIRLRQLGRKLELERIHPHKFRRTMATRAIDKGMPIEQVQKILGHSQ 298 Query: 316 VDQAETYT 323 +D Y Sbjct: 299 IDTTMQYA 306 >gi|239621773|ref|ZP_04664804.1| conserved hypothetical protein [Bifidobacterium longum subsp. infantis CCUG 52486] gi|239514964|gb|EEQ54831.1| conserved hypothetical protein [Bifidobacterium longum subsp. infantis CCUG 52486] Length = 396 Score = 94.7 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 52/356 (14%), Positives = 108/356 (30%), Gaps = 50/356 (14%) Query: 11 VTKERTRHGKIIYY--FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68 VT+ +T G+ Y +RK G + + + P+ Sbjct: 4 VTRYKTSKGETRYRVRYRKPDGTQTDKRGFKRKVDAENWAAKRVTVAKAEGTYIDPQAGK 63 Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----- 123 T+ L + + + R ++ + + G+ +T + + V Sbjct: 64 ATVGELAPAWLAKKKLSTKPSHYRTLEGAWEKWVKPEWGNTPVSAVTRETTQQWVTGISQ 123 Query: 124 -----ESRK-----HTPSSAIQFLTS---MRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170 + R P SA L + + + A + + NP +E P+++ + Sbjct: 124 GKTVKDERGNEIVLAKPRSASVVLRAHGVLAGILDDAKKDRRIPDNPARGIELPRKRRKK 183 Query: 171 IRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY-SGLRCSDSCRAGVQHLQ----------- 218 T E + + + R +L G+R + V + Sbjct: 184 HVYLTAEQLDRLAGSV---TPWRRDLVLVLGLCGMRWGELIPLRVMDVDLEKHRIYIGVS 240 Query: 219 ----NNIF---SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI 271 + KT K I+ + D M+ L + F ++ M ++ Sbjct: 241 APMVGGVIIPDDTKTYKARAIMYPVVLDPIMRRLCADRKPGDLLFEQPGREGMMIREWGN 300 Query: 272 ------WFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319 W +AG+ + H +R +A++ AGA + G K+ Sbjct: 301 ASRDDGWLSVGLRRAGIPGHLTIHDLRHTAASLMVRAGANVKAVQRQLGHKSAAMT 356 >gi|320658751|gb|EFX26425.1| putative defective integrase; Qin prophage [Escherichia coli O55:H7 str. USDA 5905] Length = 427 Score = 94.7 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 45/317 (14%), Positives = 97/317 (30%), Gaps = 64/317 (20%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK-ITTKHIRSGVESR-- 126 T+K L ++ +A S ++ + I+ G+ + I + + + Sbjct: 80 TIKELAEKFLALKE-TEVAKTSLNTYRAVIKNILSIIGEKNLASSINKEKLLEVRKELLT 138 Query: 127 --------------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172 + + ++T++ +F++ V Y+A NP + K Sbjct: 139 GYQIPKSNYIVTQPGRSAVTVNNYMTNLNAVFQFGVDNGYLADNPFKGISPLKESRTIPD 198 Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIK----- 225 P ++E+ + Q + + +Y+G+R + C G + + N I+ Sbjct: 199 PLSREEFIRLIDAC-RNQQAKNLWCVSVYTGVRPGELCALGWEDIDLKNGTMMIRRNLAK 257 Query: 226 --------TQKTGTIITV--ELPDGFMKLLAMTPIGKETFF------------------- 256 T +I + D + +T + KE Sbjct: 258 DRFTVPKTQAGTNRVIHLIKPAIDALRSQMTLTRLSKEHIIDVHLREYGRTEKQKCTFVF 317 Query: 257 -------INNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELM 308 + N + A +AG+ ++ ++ R A S AGA + Sbjct: 318 QPEVSARVKNYGDHFTVDSIRQMWDAAIKRAGLRHRKSYQSRHTYACWSLTAGANPAFIA 377 Query: 309 ATYGWKTVDQA-ETYTK 324 G + Y K Sbjct: 378 NQMGHADAQMVFQVYGK 394 >gi|303326016|ref|ZP_07356459.1| site-specific recombinase, phage integrase family [Desulfovibrio sp. 3_1_syn3] gi|302863932|gb|EFL86863.1| site-specific recombinase, phage integrase family [Desulfovibrio sp. 3_1_syn3] Length = 337 Score = 94.7 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 53/340 (15%), Positives = 111/340 (32%), Gaps = 23/340 (6%) Query: 17 RHGKIIYYFR-KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75 + G + R + G + + A+ +I+ + T+L+ Sbjct: 6 KRGDFQWEVRVRRKGHPTQCKTFEIKADAERWARAVEKEMDGGAFISQKEAERTSLEEAF 65 Query: 76 SEYRKSAHWGSLAVNSRISFESY--FDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133 + +LA ++ K R + E++ +P + Sbjct: 66 KRFIPEYIEKNLAHPKNEIVRAHGIMKYPFAKKSLVAIRGNDIAKLIQEREAQGRSPHTI 125 Query: 134 IQFLTSMRVLF-----KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 + + + L+ W + + NP +V +PK R + ++ S+ Sbjct: 126 ARDIALISRLYEVARANWGME-GLM--NPTKNVIKPKLPQGRTRRLMPGEEKKLLEASSK 182 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN--IFSIKTQKTGTIITVELPDGFMKLLA 246 Q F L S +R + Q + I + K G TV L + +L Sbjct: 183 AFQ--RILRFALESSMRREEIASLTWQQVDLERCILFLPKTKNGEARTVPLSPAALAILK 240 Query: 247 MTPIGKETFFINNDKQKMNAT--QFSIWFKAKATKAGV-NKSAHGVRKFSATISADA-GA 302 P + +D++ + T + + KAG+ + H +R + + + Sbjct: 241 EIPRPEG---ERHDQRVFSYTISSITGAMRENCAKAGIKDLRFHDLRHEAISRLFENTDL 297 Query: 303 TAHELMATYGWKTVDQAETYTK-GADRIRLGIKNSRRISS 341 E+ G KT+ YT A+R+ + ++R S Sbjct: 298 DVMEIRMITGHKTLQMLARYTHLRAERLVERLAGAKRSGS 337 >gi|303236616|ref|ZP_07323197.1| site-specific recombinase, phage integrase family [Prevotella disiens FB035-09AN] gi|302483120|gb|EFL46134.1| site-specific recombinase, phage integrase family [Prevotella disiens FB035-09AN] Length = 337 Score = 94.7 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 54/265 (20%), Positives = 95/265 (35%), Gaps = 26/265 (9%) Query: 84 WGSLAVNSRISFESYFDQI-IRKSGDFDYRKITTKHIRSGVESRKHTP-----------S 131 + LA I ++ + +G + ++ R +E P + Sbjct: 65 FKGLADRKNIKWQHVYKHFQRFVNGKCTFEEVDVDLCRKFMEYLLDAPQSIHTNQKLHIN 124 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191 SA + ++ R + A R + NP ++R + ++E++ + E Sbjct: 125 SAAGYWSTFRAVLHTAYRDRKIKENPNGFLDRIECIPTIREHLSQEELIRLAETPCEEEV 184 Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQ---NNIFSIKT--QKTGTIITVELPDGFMKLLA 246 + AF F +GLR SD + Q +Q N + T QKT I+ + D LL Sbjct: 185 LKKAFLFACLTGLRKSDIRQLTWQQIQPYTNGRMFVTTRMQKTKEIVHNPISDEAYGLLG 244 Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATA 304 E + K KM W T AG+ K + H R ++ + G Sbjct: 245 E---RGEGLIFEDFKDKMLQGPLQRWL----TAAGITKKITFHCTRHSFGSLHVEMGTDM 297 Query: 305 HELMATYGWKTVDQAETYTKGADRI 329 + A G K + + Y+K A + Sbjct: 298 AVIQAYLGHKNITTTQIYSKIAAQQ 322 >gi|255014895|ref|ZP_05287021.1| integrase [Bacteroides sp. 2_1_7] Length = 311 Score = 94.7 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 47/284 (16%), Positives = 105/284 (36%), Gaps = 36/284 (12%) Query: 90 NSRISFESYFDQIIRKSG--DFDYRKITTKH---IRSGVESRKHTPSSAIQFLTSMRVLF 144 ++ S++ + G Y I +S + + + ++ ++ +R ++ Sbjct: 25 STAKSYQDALNSFKCFCGMEAIPYAYINRNRLLCYQSWLLDKGRSLNTVSTYMRRIRHIY 84 Query: 145 KWAVRQEYVAINP------CLSVERPKRKTEGIRPWTKEDMQQ-FKSFWSEGSQPRLAFE 197 AV P VE ++K +E +++ F + + S R+ Sbjct: 85 NLAVEANEAPFVPNLFKDVFTGVESKRKK-----ALPQEMLERMFNAELEDQSLRRVQLT 139 Query: 198 FLL---YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL----AMTPI 250 L +SG+ D +++++ I QK+G++I +E+P G ++LL A T Sbjct: 140 VRLMFAFSGIAFVDLAHLKWENIRDGILQYHRQKSGSLIQLEIPSGALRLLDELSACTAK 199 Query: 251 GKETFFINNDKQK----------MNATQFSIWFKAKATKAG--VNKSAHGVRKFSATISA 298 F ++ ++F+ ++ A G + +++ +R A+ Sbjct: 200 ESLYLFPFLSGRRTGEAAYKEYNRTLSRFNRDLRSLARSTGVTLPVTSYTIRHSFASFLK 259 Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342 + + + G K++ + Y K RL N SV Sbjct: 260 EQDVSIEVISELLGHKSIKTTQIYLKSFSLERLSKVNRNCFESV 303 >gi|158321643|ref|YP_001514150.1| integrase family protein [Alkaliphilus oremlandii OhILAs] gi|158141842|gb|ABW20154.1| integrase family protein [Alkaliphilus oremlandii OhILAs] Length = 286 Score = 94.7 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 37/280 (13%), Positives = 94/280 (33%), Gaps = 27/280 (9%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYF----DQIIRKSG-DFDYRKITTKHIRSGVESR 126 ++ + + + + ++ + +K G + + +I++ + + Sbjct: 4 SNVVENFLRYLESIDRSKETIKGYKKELGYFGRFLEKKYGFEKEMEQISSVDLEDYMYYL 63 Query: 127 KHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED----M 179 K + ++ + + R L+K++ ++E N + +E K K ++E+ + Sbjct: 64 KKSGKKSATRSRVVYIFRSLYKYSYKRELCTKNLAIFLESVKVKQTERDYLSEEEFILLI 123 Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVEL 237 Q+ S S + A + + Y+GLR S++ ++++ I + K + + Sbjct: 124 QKINS-----SIVKAAVQTIFYTGLRVSEALNLTMENVKLDEKIIYTISGKGDKDRIIPI 178 Query: 238 PDGFMKLLA------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGV 289 + +L + FF ++ + K SAH + Sbjct: 179 SNKLYYILDDYVKNIRPDVESNKFFCTKKTGSLSPQYINRMLHIAKDSLNWEKNISAHIL 238 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 R A+ A + G + Y R Sbjct: 239 RHSFASNLILQNAPLPAVQKLLGHSDLRVTSRYIHQDLRQ 278 >gi|254518744|ref|ZP_05130800.1| phage integrase [Clostridium sp. 7_2_43FAA] gi|226912493|gb|EEH97694.1| phage integrase [Clostridium sp. 7_2_43FAA] Length = 292 Score = 94.7 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 32/220 (14%), Positives = 76/220 (34%), Gaps = 15/220 (6%) Query: 118 HIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177 + S+ + S + + S+R + + Q+ V+ P + + + T + Sbjct: 53 GYIQYLLSQGKSERSINRIVISLRSFYNYLKDQKVVSEIPKIYYKNTTTTKKLPEILTID 112 Query: 178 DMQQFKSF----WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT-I 232 ++ + ++G + E + +G++ S+ V + + +K Sbjct: 113 EVDRIIKIVDKDCNKGIRDNALLELMYATGMKVSEIIGLNVYDINLELNFVKCHDNKNYE 172 Query: 233 ITVEL----PDGFMKLLAM----TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK 284 + + + + L + G ET F+N + + K + KAG+ K Sbjct: 173 RLIPIGRSATEALKEYLKIRDQVASAGVETLFVNLNGNHLTRQGVWRIVKEYSHKAGIKK 232 Query: 285 --SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 + + R A GA + G + + +TY Sbjct: 233 EVNLNTFRHSFAVHLLQNGANVRAVQKLLGNQVLTYMDTY 272 >gi|218691167|ref|YP_002399379.1| Shufflon-specific DNA recombinase [Escherichia coli ED1a] gi|218428731|emb|CAR09669.2| Shufflon-specific DNA recombinase [Escherichia coli ED1a] Length = 374 Score = 94.7 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 46/274 (16%), Positives = 95/274 (34%), Gaps = 19/274 (6%) Query: 65 RKKPTTLKWLISEYRKSAHWGS---LAVNSRIS---FESYFDQIIRKSGDFDYRKITTKH 118 + + TL + +Y K+ L R++ ++ + + D + Sbjct: 6 KIRKMTLNRALDKYLKTVSIHKKGHLQEFYRVNVIKRHPMAERYMDEITTVDIATYRDQR 65 Query: 119 IRSG--VESRKHTPSSAIQFLTSMRVLFKWA-VRQEYVAINPCLSVERPKRKTEGIRPWT 175 + R+ T ++ L + LF A V +NP V +PK + R T Sbjct: 66 LAQINPRTGRQITGNTVRLELALLSSLFNIASVEWGTCRMNPVELVRKPKISSGRDRRLT 125 Query: 176 KEDMQQF-KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQKTGTI 232 + ++ + F + Q + F L + +R + +HL + + K G Sbjct: 126 SGEERRLSRYFRDKNQQLYVIFHLALETAMRQGEILTLRWEHLDLQHGVAHLPETKNGLP 185 Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRK 291 V L L + P IN + ++ F ++ + N H +R Sbjct: 186 RDVPLSRKARNYLQILPQQ-----INGNVFSYTSSGFKSAWRTALLDLKIENLHFHDLRH 240 Query: 292 FSATISADAG-ATAHELMATYGWKTVDQAETYTK 324 + + + G E+ A G ++++ + YT Sbjct: 241 EAISRFFELGTLNVMEVAAISGHRSLNMLKRYTH 274 >gi|92112109|gb|ABE73743.1| class 1 integron integrase [Azoarcus communis] Length = 337 Score = 94.7 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 42/306 (13%), Positives = 93/306 (30%), Gaps = 62/306 (20%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHT 129 ++ + R+ + ++ + ++ + IR G + + + + + RK + Sbjct: 16 VLDQLRERIRYLHYSLRTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75 Query: 130 PSSAIQFLTSMRVLFK--WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 S+ Q L ++ + ++ + RP+ T +++ + F Sbjct: 76 VSTHRQALAALLFFYGKVLCTDLTWLQ-----EIGRPRPSRRLPVVLTPDEVVRILGFL- 129 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQKTGTIITVELPDGFMKLL 245 EG RL + L +G+R S+ + V+ + ++ K + LP+ L Sbjct: 130 EGEH-RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSL 188 Query: 246 AMTPIGKETFFINN---------------------------------------------D 260 +++ + Sbjct: 189 REQLSRARDWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFLVFAQHTHSTDPRSGVVR 248 Query: 261 KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318 + M F FK +AG+ K + H +R AT +G + G V Sbjct: 249 RHHMYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVST 308 Query: 319 AETYTK 324 YT Sbjct: 309 TMIYTH 314 >gi|307310851|ref|ZP_07590497.1| integrase family protein [Escherichia coli W] gi|306909029|gb|EFN39525.1| integrase family protein [Escherichia coli W] gi|323378547|gb|ADX50815.1| integrase family protein [Escherichia coli KO11] Length = 426 Score = 94.7 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 45/317 (14%), Positives = 97/317 (30%), Gaps = 64/317 (20%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK-ITTKHIRSGVESR-- 126 T+K L ++ +A S ++ + I+ G+ + I + + + Sbjct: 80 TIKELAEKFLALKE-TEVAKTSLNTYRAVIKNILSIIGEKNLASSINKEKLLEVRKELLT 138 Query: 127 --------------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172 + + ++T++ +F++ V Y+A NP + K Sbjct: 139 GYQIPKSNYIVTQLGRSAVTVNNYMTNLNAVFQFGVDNGYLADNPFKGISPLKESRTIPD 198 Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIK----- 225 P ++E+ + Q + + +Y+G+R + C G + + N I+ Sbjct: 199 PLSREEFIRLIDAC-RNQQAKNLWCVSVYTGVRPGELCALGWEDIDLKNGTMMIRRNLAK 257 Query: 226 --------TQKTGTIITV--ELPDGFMKLLAMTPIGKETFF------------------- 256 T +I + D + +T + KE Sbjct: 258 DRFTVPKTQAGTNRVIHLIKPAIDALRSQMTLTRLSKEHIIDVHLREYGRTEKQKCTFVF 317 Query: 257 -------INNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELM 308 + N + A +AG+ ++ ++ R A S AGA + Sbjct: 318 QPEVSARVKNYGDHFTVDSIRQMWDAAIKRAGLRHRKSYQSRHTYACWSLTAGANPAFIA 377 Query: 309 ATYGWKTVDQA-ETYTK 324 G + Y K Sbjct: 378 NQMGHADAQMVFQVYGK 394 >gi|260843883|ref|YP_003221661.1| putative integrase [Escherichia coli O103:H2 str. 12009] gi|257759030|dbj|BAI30527.1| putative integrase [Escherichia coli O103:H2 str. 12009] Length = 431 Score = 94.7 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 46/317 (14%), Positives = 99/317 (31%), Gaps = 64/317 (20%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK-ITTKHIRSGVESR-- 126 T+K L ++ +A S ++ + I+ G+ + I + + + + Sbjct: 85 TIKELAEKFLALKE-TEVAKTSLNTYRAVIKNILSIIGEKNLASSINKEKLLAVRKELLT 143 Query: 127 --------------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172 + + ++T++ +F++ V Y+A NP + K Sbjct: 144 GYQIPKSNYIVTQPGRSAVTVNNYMTNLYAVFQFGVDNGYLANNPFKGISPLKESRTIPD 203 Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIK----- 225 P ++E+ + Q + + +Y+G+R + C G + + N I+ Sbjct: 204 PLSREEFIRLIDAC-RNQQAKNLWCVSVYTGIRPGELCALGWEDIDLKNGTMIIRRNLAK 262 Query: 226 --------TQKTGTIITV--ELPDGFMKLLAMTPIGKETFF------------------- 256 T +I + D +A+T + KE Sbjct: 263 DRFTVPKTQAGTNRVIHLINPAIDALRSQMALTRLSKEHIIDVHLREFGRTEKQKCTFVF 322 Query: 257 -------INNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELM 308 + N + A +AG+ ++ ++ R A S AGA + Sbjct: 323 QPEVSAKVKNYGDHFTVDSIRQMWDAAVKRAGIRHRKSYQSRHTYACWSLTAGANPAFIA 382 Query: 309 ATYGWKTVDQA-ETYTK 324 G + Y K Sbjct: 383 NQMGHADAQMVFQVYGK 399 >gi|325286409|ref|YP_004262199.1| integrase family protein [Cellulophaga lytica DSM 7489] gi|324321863|gb|ADY29328.1| integrase family protein [Cellulophaga lytica DSM 7489] Length = 297 Score = 94.7 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 43/248 (17%), Positives = 91/248 (36%), Gaps = 10/248 (4%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS-SAIQFLTSMRVL 143 + + N+ ++ F Q + +++T HI + + SA S+ + Sbjct: 34 KNYSKNTTKTYMHMFKQFLTYMYPMPLHQVSTAHIMYYHKELVTKQNVSASYQNQSINAI 93 Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSG 203 K+ + + RP++ + + + +++ + + + + + + G Sbjct: 94 -KFYIEKVLNLPKVQYDFCRPRKAKKLPKVLSLQEVADIITV-TNNIKHKTILKMIYGCG 151 Query: 204 LRCSDSCRAGVQHLQNN--IFSIKTQK-TGTIITVELPDGFMKLLAMTPIGKET--FFIN 258 LR S+ V+ + +N ++ K IT+ P +L A + K F Sbjct: 152 LRISECVNLKVEDIDSNNMRVWVRNAKGNKDRITLLSPTMLAQLRAYYIVYKPKKWLFEG 211 Query: 259 NDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTV 316 D ++ +A+ F KA V+ + H +R AT DAG + G + Sbjct: 212 ADGKQYSASSIRQVFNRSKKKARVHMPATVHTLRHSFATHLLDAGTNLRYIQKLLGHNSS 271 Query: 317 DQAETYTK 324 E YT Sbjct: 272 KTTEIYTH 279 >gi|307708146|ref|ZP_07644613.1| site-specific recombinase, phage integrase family [Streptococcus mitis NCTC 12261] gi|307615592|gb|EFN94798.1| site-specific recombinase, phage integrase family [Streptococcus mitis NCTC 12261] Length = 384 Score = 94.7 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 61/366 (16%), Positives = 117/366 (31%), Gaps = 57/366 (15%) Query: 11 VTKERTRHGKIIYYF-------RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS 63 + K +T+ G I+YY G +R Y + L Sbjct: 3 IHKYKTKKG-ILYYVSFYIGLDAYGKKKRHLKRGFKTKKEAKLYEARLEAGVVAPTVSTD 61 Query: 64 PRKKPTTLKWL----ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119 T K L + Y + + + ++ + + I GD +I+ Sbjct: 62 KTNPKVTYKELYQEWFNAYVGTVEETT-SSQTKNIYRIHILPI---FGDKFIDQISPLDC 117 Query: 120 RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK-RKTEGIRPWTKED 178 ++ + + T + Q + +F +A+ Y+ NP +V PK +KT W+ E+ Sbjct: 118 QNFITQKSQTFKNIKQIKSYTSKIFDFAINMNYIDRNPMKNVIMPKIKKTRSDNFWSLEE 177 Query: 179 MQQFKSFWS--EGSQPRLAFEFLLYSGLRCSDSCRAGVQH----------------LQNN 220 + F E + F L +SGLR + + Sbjct: 178 LHHFLDIVKETEPFKHFALFRLLAFSGLRKGELYALKWADINFDSNLLNIDKSLGRIDGK 237 Query: 221 IFSIKTQKTGTIITVELPDGFMKLLA-----------MTPIGK--------ETFFINNDK 261 T+ ++ T+ L D + ++ P+ K ++ +NDK Sbjct: 238 AIEKSTKNESSVRTIYLDDETIDIIKQWRNFYLKEQSQLPLTKLNISDEYMFSYISSNDK 297 Query: 262 -QKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319 + ++A + K + S HG R AT+ ++ G G + Sbjct: 298 IEPLHADYINNVLNRIIKKHKLKPISPHGFRHTHATLMSEIGIDPSNTSKRLGHASSQVT 357 Query: 320 -ETYTK 324 + YT Sbjct: 358 LDVYTH 363 >gi|254494929|ref|ZP_01052592.2| phage integrase family protein [Polaribacter sp. MED152] gi|213690511|gb|EAQ42020.2| phage integrase family protein [Polaribacter sp. MED152] Length = 315 Score = 94.7 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 45/273 (16%), Positives = 103/273 (37%), Gaps = 22/273 (8%) Query: 74 LISEYRKS-AHWGSLAVNSRISFESYFDQ----IIRKSGDFDYRKITTKHIRSGVESR-- 126 LI + +H + + ++ I+++ + I D ++ IRS + S Sbjct: 22 LIKAFLDYLSHEKNYSKHTVIAYQKDLNSFKSFIRINFDQEDLLEVNYSQIRSWIVSLVE 81 Query: 127 -KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + + + + ++S++ +K+ + E + NP + K + P++++++ Sbjct: 82 EEISNRTINRKISSLKSFYKFLQKTEQIKSNPLQKHKALKVAKKVQVPFSQKEVATVLES 141 Query: 186 WSEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG 240 +E S + +L E +G+R ++ ++ + + +K K V + + Sbjct: 142 NTENSFVSIRNKLMVEIFYSTGIRRAELINIQLKDINSGSNVLKVLGKRNKERLVPILNS 201 Query: 241 FMKLL-------AMTPIGKETFFINNDKQKMNATQFSIWFKAK--ATKAGVNKSAHGVRK 291 +K L E FI K+ T + + V KS H +R Sbjct: 202 VLKTLNLYLGHRKNISNNSEYLFITEKGNKIYETLVYRVINSYFSKVSSKVKKSPHMLRH 261 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTK 324 AT + GA + + G ++ + YT Sbjct: 262 SFATHLLNEGADLNSVKELLGHSSLASTQVYTH 294 >gi|154505934|ref|ZP_02042672.1| hypothetical protein RUMGNA_03476 [Ruminococcus gnavus ATCC 29149] gi|153793952|gb|EDN76372.1| hypothetical protein RUMGNA_03476 [Ruminococcus gnavus ATCC 29149] Length = 376 Score = 94.7 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 41/278 (14%), Positives = 80/278 (28%), Gaps = 38/278 (13%) Query: 90 NSRISF-ESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFK--- 145 N+ ++ E Y I G+ + H + + L+ Sbjct: 86 NTVRNYTERYIKNIKPVIGEMPLSDVKPLHCQKIFYDMADQEYRTSTIYQARIALYNMFE 145 Query: 146 WAVRQEYVAINPCLS-VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGL 204 +A E + NPC V+ K + D+Q+ ++EG + F+L +GL Sbjct: 146 YAKENEVLCSNPCKKSVKSDMGKPSEKKVALTRDIQKTFLQYAEGQSYENQYRFILQTGL 205 Query: 205 RCSDSCRAGVQHLQNN-------------------IFSIKTQKTGTIITVELPDGFMKLL 245 R + + + K+G T+ L + + +L Sbjct: 206 RTGELVGLKWKDVDLKSKTIQIRRSMEYRYSAKKWRIGEPKSKSGYR-TIPLTEEAVAIL 264 Query: 246 AMTPIGKETF-----------FINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFS 293 + F+ + + + KA + + S H +R Sbjct: 265 KKQKEKNKRISEISTEWEEFVFLCRKGTPVKNSTYDTALFKICDKAKIPRFSMHILRHTF 324 Query: 294 ATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIR 330 AT +AG L G + Y + + Sbjct: 325 ATRCIEAGMKPKTLQMLLGHSNIGITMNLYVHTTEEEK 362 >gi|54297046|ref|YP_123415.1| hypothetical protein lpp1088 [Legionella pneumophila str. Paris] gi|53750831|emb|CAH12239.1| hypothetical protein lpp1088 [Legionella pneumophila str. Paris] Length = 414 Score = 94.7 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 49/293 (16%), Positives = 108/293 (36%), Gaps = 20/293 (6%) Query: 51 LTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD 110 +G PK+ KK T++ LI+ + + + + II G + Sbjct: 77 RSGQAPKKIIQIQNEKKNNTMEQLINSWYQGYVIKNRK-KPLQIKQQIEADIIPLLGHLE 135 Query: 111 YRKITTKHIRSGVES--RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER---PK 165 KI I + +++ ++ P A + L+S++ +F +A+ + + NP +++ Sbjct: 136 LEKIKPIDITNALDTIVKRGAPIHANRVLSSLKQVFNYAISRGNLETNPAANIKARNIGG 195 Query: 166 RKTEGIRPWTKEDMQQFKSFW-----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-N 219 + R ++++ F Q + A + +L +G+R ++ A H Sbjct: 196 IEKPSERFLALDEIKTLWQFLNSDQSKMSLQTKSAIKIILLTGVRTAEIRLAQWSHFDFA 255 Query: 220 NIFSIKTQ---KTGTIITVELPDGFMKLLAMTPIGKETFFINND---KQKMNATQFSIWF 273 N K G + + L + ++ G ++ F+ + + ++ Sbjct: 256 NSLWTIPSELTKGGITVKIHLSELTKSVILKLNEGSDSSFVLSGLVPNKPLDENALPRAI 315 Query: 274 KAKATKAGVN-KSAHGVRKFSATISADAGA-TAHELMATYGWKTVDQAETYTK 324 + + G+ SAH +R+ AT + + G K TY K Sbjct: 316 RRIQKRVGIPEWSAHDLRRTFATQLGETLHIDPVVIEKCLGHKMPRIMATYNK 368 >gi|301054003|ref|YP_003792214.1| DNA integration/recombination/invertion protein [Bacillus anthracis CI] gi|300376172|gb|ADK05076.1| DNA integration/recombination/invertion protein [Bacillus cereus biovar anthracis str. CI] Length = 317 Score = 94.7 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 45/295 (15%), Positives = 94/295 (31%), Gaps = 52/295 (17%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQII-------------RKSGDFDYRKITTKHIRS 121 I EY + +L+ + S+E+ ++ I ++HI+ Sbjct: 7 IKEYIEDRSLENLSHRTLESYENTLNEFRLWLNGCNGNEEEASSRAVTHVEDIKSQHIKD 66 Query: 122 GVE----SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAI--NPCLSVERPKRKTEGIRPWT 175 + R ++ ++ LT+++V F + ++ + NP L V+ P++ T T Sbjct: 67 YMRYCYKERSNSHTTVAGKLTNLKVYFNYLAQEGLIEERNNPTLRVKNPRKDTNV-ETLT 125 Query: 176 KED-------------MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222 +E + F + + FLL +G R + + + Sbjct: 126 EEQIRLILRHLRRRRRVDDFYHY-----RDYTLVVFLLGTGARLGEIMDLRWEDIDLKAG 180 Query: 223 SIKTQKTGTIIT----------VELPDGFMKLLAMTPIGKETFFINND-KQKMNATQFSI 271 + TG T + + + L G + +KM+ + Sbjct: 181 QVVFPDTGKARTQQGQPLGAKLISELKDYKQYLENDTYGLPAYLFTTRTGRKMSREAIKL 240 Query: 272 WFKAKATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 F A + SAH +R F + AG + + ++ Y Sbjct: 241 VFVRLAQELNFKSGRVSAHSLRHFYCSSLIKAGVSPFVVQKLMRHSKIETTMKYV 295 >gi|260664108|ref|ZP_05864961.1| Lj965 prophage integrase [Lactobacillus jensenii SJ-7A-US] gi|260561994|gb|EEX27963.1| Lj965 prophage integrase [Lactobacillus jensenii SJ-7A-US] Length = 375 Score = 94.7 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 46/295 (15%), Positives = 105/295 (35%), Gaps = 36/295 (12%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133 + YR + S A + I++ + G+ KI+ + ++ + Sbjct: 79 WFARYRTTVK-ESTANKTAINYRVHIKPF---FGNAYMDKISVRDVQLWADKLATKLVKF 134 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR-----PWTKEDMQQFKSFWSE 188 + +R +++A+R YV+INP S+ P + + R +++++++ F E Sbjct: 135 NDPIFILRSFYEYAIRMNYVSINPVGSIIMPIKTSRPRRNVEDNVYSRKELELFFQVAKE 194 Query: 189 -GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ----------------NNIFSIKTQKTGT 231 + F+ L +GLR S++ + +N ++ K+ + Sbjct: 195 YNLRAYTYFKLLASTGLRKSEALALTWDDIDFINGVIDVNKTLAVGLDNKVQVQPPKSKS 254 Query: 232 IIT-VELPDGFMKLLAMTPIG----KETFFINNDKQKMNATQFSIWFKAKATKA--GVNK 284 I V + +L F + ++ ++ W +A KA + Sbjct: 255 SIRQVPISANLANVLNEYKNSEKILSAKVFHTYTGKYLSLSKPMKWLEAIYNKAPKDLKH 314 Query: 285 -SAHGVRKFSATIS-ADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNS 336 + HG R AT+ ++ + G + + YT ++ + N Sbjct: 315 ITVHGFRHTFATLLISETDVKPKTVQMLLGHSNIQMTLDIYTHINNKNKKEAVNM 369 >gi|260425160|ref|ZP_05779169.1| site-specific recombinase, phage integrase family [Dialister invisus DSM 15470] gi|260404344|gb|EEW97891.1| site-specific recombinase, phage integrase family [Dialister invisus DSM 15470] Length = 274 Score = 94.7 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 47/253 (18%), Positives = 89/253 (35%), Gaps = 43/253 (16%) Query: 109 FDYRKITTKHIRSGVES------------RKHTPSSAIQFLTSMRVLFKWAVRQEYVAIN 156 KIT IR+ RK++P+ + +F +AV + N Sbjct: 1 MPINKITPADIRAWQNQILQATYITKGLQRKYSPTYVKVLHVQLSAIFNYAVTYYRLPSN 60 Query: 157 PCLSVERP-KRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQ 215 P K + ++ WT E +F S + S L F L Y+G+R + + Sbjct: 61 PAKLAGSIGKTRAHTMKFWTIEQFTRFISSFPADSTEYLIFNLLFYTGMRSGELLALTLA 120 Query: 216 HLQNNIFSIKTQKTGTIIT----------------VELP----DGFMKLLAMTPIGKETF 255 SI+ KT + + + LP D + +P Sbjct: 121 DFYEREKSIRINKTYSRLHKKDIITSPKTEKGNRVILLPQFIVDMLTDYINRSP------ 174 Query: 256 FINNDKQKMNATQFSIW--FKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYG 312 +I +++ T+F ++ K +GV + H +R A++ + G + + G Sbjct: 175 YIKQNERIFPCTKFWLFRHMKLGCKLSGVEQIRIHDLRHSHASLLIEMGFSPLLIKERLG 234 Query: 313 WKTVDQA-ETYTK 324 + + +TY+ Sbjct: 235 HEDIKTTLQTYSH 247 >gi|213155654|ref|YP_002317699.1| IntI1 integrase [Acinetobacter baumannii AB0057] gi|301347157|ref|ZP_07227898.1| IntI1 integrase [Acinetobacter baumannii AB056] gi|213054814|gb|ACJ39716.1| IntI1 integrase [Acinetobacter baumannii AB0057] Length = 344 Score = 94.7 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 42/306 (13%), Positives = 94/306 (30%), Gaps = 62/306 (20%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHT 129 ++ + R+ + ++ + ++ ++ IR G + + + + + RK + Sbjct: 16 VLDQLRERIRYLHYSLRTEQAYVNWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75 Query: 130 PSSAIQFLTSMRVLFK--WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 S+ Q L ++ + ++ + RP+ T +++ + F Sbjct: 76 VSTHRQALAALLFFYGKVLCTDLPWLQ-----EIGRPRPSRRLPVVLTPDEVVRILGFL- 129 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQKTGTIITVELPDGFMKLL 245 EG RL + L +G+R S+ + V+ + ++ K + LP+ L Sbjct: 130 EGEH-RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSL 188 Query: 246 AMTPIGKETFFINN---------------------------------------------D 260 +++ + Sbjct: 189 REQLSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVR 248 Query: 261 KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318 + M F FK +AG+ K + H +R AT +G + G V Sbjct: 249 RHHMYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVST 308 Query: 319 AETYTK 324 YT Sbjct: 309 TMIYTH 314 >gi|296104775|ref|YP_003614921.1| phage integrase family site-specific recombinase [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295059234|gb|ADF63972.1| phage integrase family site-specific recombinase [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 361 Score = 94.7 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 52/318 (16%), Positives = 97/318 (30%), Gaps = 35/318 (11%) Query: 28 GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSL 87 GRRIR AY + + + ++ + ++ L++ + AH +L Sbjct: 20 RDGRRIR-RQFATKGEALAYERHIKEQSQDKPWLG-EKADKRRVRDLVTAWYN-AHGVTL 76 Query: 88 AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH------------TPSSAIQ 135 A + + + GD + K + E R TP + Sbjct: 77 ADGEKR--KGAMEFACYAMGDPLATEFNAKIFSTYREQRLSGKITRSDRVKTVTPRTVNL 134 Query: 136 FLTSMRVLFKWAVR-QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL 194 L R +F R ++ A NP +V K + T E+ + + L Sbjct: 135 ELAYFRAMFNELKRLDDWTAPNPLENVREFKIAEVELAWLTVEEATRLLEECEKSKADDL 194 Query: 195 --AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGK 252 + L +G R ++ + + + K V + + +LL + K Sbjct: 195 TAIVKICLATGARWGEAESLTGKQISPGKITFIKTKGKKNRAVPISEELYELLPKSRTSK 254 Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGVNKS----AHGVRKFSATISADAGATAHELM 308 F T F++ +AG+ +H +R A+ G L Sbjct: 255 PLF-----------TGCYSAFRSAIKRAGIELPDGQLSHVLRHTFASHFMMGGGNILVLQ 303 Query: 309 ATYGWKTVDQAETYTKGA 326 G + Y A Sbjct: 304 RILGHTDIKVTMRYAHFA 321 >gi|254466182|ref|ZP_05079593.1| tyrosine recombinase XerC [Rhodobacterales bacterium Y4I] gi|206687090|gb|EDZ47572.1| tyrosine recombinase XerC [Rhodobacterales bacterium Y4I] Length = 306 Score = 94.7 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 39/265 (14%), Positives = 80/265 (30%), Gaps = 27/265 (10%) Query: 86 SLAVNSRISFESYFDQIIR--------KSGDFDYRKITTKHIRSGVESRKHTPSSAI--- 134 + N+ ++ + G +ITT +R+ + S +++ + A Sbjct: 24 DASANTLAAYRGDVTAFLAFMTQHFGGPQGLGALARITTADMRAWMASERNSGTGARSLA 83 Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE------ 188 + L++++ ++W ++E L PK + + RP E + Sbjct: 84 RKLSAVKTFYRWLAKREGFEPAAVLLARAPKFQKKLPRPLAPEAAKAVLEAVELQSETDW 143 Query: 189 -GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM 247 ++ L GLR S++ K V + + Sbjct: 144 VAARDVAVVTLLYGCGLRISEALGLKGADAPLPQVLRILGKGRKERVVPVLPAARAAVDR 203 Query: 248 -------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISA 298 F +N Q + G+ +A H +R AT Sbjct: 204 YLELCPHPQERAAPLFRGVRGGALNPRQIQGVMAKTRAQLGLPATATPHALRHSFATHLL 263 Query: 299 DAGATAHELMATYGWKTVDQAETYT 323 +AG + G ++ +TYT Sbjct: 264 EAGGDLRAIQELLGHASLSTTQTYT 288 >gi|258612347|ref|ZP_05270117.2| DNA integration/recombination/invertion protein [Listeria monocytogenes F6900] gi|293596731|ref|ZP_05263903.2| DNA integration/recombination/invertion protein [Listeria monocytogenes J2818] gi|258611034|gb|EEW23642.1| DNA integration/recombination/invertion protein [Listeria monocytogenes F6900] gi|293591908|gb|EFG00243.1| DNA integration/recombination/invertion protein [Listeria monocytogenes J2818] Length = 393 Score = 94.7 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 42/296 (14%), Positives = 84/296 (28%), Gaps = 47/296 (15%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVE---SR 126 + ++R + L N+ + + + II KITT + + Sbjct: 71 FIDFVEKWRLNYAKRELKGNTIDKYNLFLENWIIPYFERKKISKITTMQLLDYFHEVQKK 130 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 PS+ +R LFK+A + LSV++P K + + +++ Sbjct: 131 GVGPSALEGHHRVIRSLFKYATLWGITETDVSLSVKKPTYKVPEKNIYNRREIEVLIDRI 190 Query: 187 SEGSQ-PRLAFEFLLYSGLRCSDSCRAGVQHLQ----------------NNIFSIKTQKT 229 + ++ + LY GLR + + + + + K Sbjct: 191 KILQKYQQVMIKLALYCGLRRGEVIGLTTKDMNYNKNTINVYRAVIKSASEGIKLDETKN 250 Query: 230 GTIITVELPDGFMKLLAMTPIGKE----------------------TFFINNDKQKMNAT 267 V P G M+ + K+ F ++D Sbjct: 251 KRKRIVPAPAGLMQEIKELAKEKQKNKDKLGLLWKGTKDLDGKTVVLIFSHDDGTPFTPA 310 Query: 268 QFSIWFKAKATKAG----VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319 + F K S H +R +A+ + G + G + Sbjct: 311 SVTRMFNRFLEKEENNDLTKISFHDLRHSAASFLLEQGINVKVIQNILGHSDIKVT 366 >gi|222033338|emb|CAP76078.1| lambdoid prophage Qin defective integrase [Escherichia coli LF82] Length = 426 Score = 94.7 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 44/317 (13%), Positives = 96/317 (30%), Gaps = 64/317 (20%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK-ITTKHIRSGVESR-- 126 T+K L ++ +A S ++ + I+ G+ + I + + + Sbjct: 80 TIKELAEKFLALKE-TEVAKTSLNTYRAVIKNILSIIGEKNLASSINKEKLLEVRKELLT 138 Query: 127 --------------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172 + + ++T++ +F++ V Y+ NP + K Sbjct: 139 GYQIPKSNYIVTQPGRSAVTVNNYMTNLNAVFQFGVDNGYLPDNPFKGISPLKESRTIPD 198 Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIK----- 225 P ++E+ + Q + + +Y+G+R + C G + + N I+ Sbjct: 199 PLSREEFIRLIDAC-RNQQAKNLWCVSVYTGVRPGELCALGWEDIDLKNGTMMIRRNLAK 257 Query: 226 --------TQKTGTIITV--ELPDGFMKLLAMTPIGKETFF------------------- 256 T +I + D + +T + KE Sbjct: 258 DRFTVPKTQAGTNRVIHLIKPAIDALRSQMTLTRLSKEHIIDVHLREYGRTEKQKCTFVF 317 Query: 257 -------INNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELM 308 + N + A +AG+ ++ ++ R A S AGA + Sbjct: 318 QPEVSARVKNYGDHFTVDSIRHMWDAAIKRAGLRHRKSYQSRHTYACWSLTAGANPAFIA 377 Query: 309 ATYGWKTVDQA-ETYTK 324 G + Y K Sbjct: 378 NQMGHADAQMVFQVYGK 394 >gi|169633390|ref|YP_001707126.1| putative phage integrase/recombinase [Acinetobacter baumannii SDF] gi|169152182|emb|CAP01086.1| putative phage integrase/recombinase [Acinetobacter baumannii] Length = 319 Score = 94.7 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 38/236 (16%), Positives = 84/236 (35%), Gaps = 14/236 (5%) Query: 93 ISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPSSAIQFLTSMRVLFKWAVR- 149 + D ++ + E R ++ + + F W + Sbjct: 77 KERRKINFLLKAMYVDQPLIQVNKDFLTEWREQRLLNVKGATIRREFILLSAFFTWCIEV 136 Query: 150 QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDS 209 + ++++NP ++ P R + E+++ F S ++ R F L +G+R S+ Sbjct: 137 KRWLSVNPLRDIKFPSESPHRERVISDEEIEILLPFLS--TEMRYIFLIALQTGMRLSEI 194 Query: 210 CRAGVQHLQN--NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNAT 267 C + ++ N + K G V L +++ K+ + + + + Sbjct: 195 CNLKWEKIRLSKNYLILDLTKNGRAREVPLSSKAVEIFKSIGPKKQGYVFS-----ITSD 249 Query: 268 QFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 + F+ +AG+ + H R +AT A +L +GW +A Y Sbjct: 250 DATDEFRDAKLEAGLEGFTFHDSRHTAATKIALR-IPLLDLCKMFGWSNPRRAMIY 304 >gi|307710454|ref|ZP_07646891.1| phage integrase family protein [Streptococcus mitis SK564] gi|307618717|gb|EFN97856.1| phage integrase family protein [Streptococcus mitis SK564] Length = 384 Score = 94.7 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 61/366 (16%), Positives = 117/366 (31%), Gaps = 57/366 (15%) Query: 11 VTKERTRHGKIIYYF-------RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINS 63 + K +T+ G I+YY G +R Y + L Sbjct: 3 IHKYKTKKG-ILYYVSFYIGLDAYGKKKRHLKRGFKTKKEAKLYEARLEAGVVAPTVSTD 61 Query: 64 PRKKPTTLKWL----ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119 T K L + Y + + + ++ + + I GD +I+ Sbjct: 62 KPNPKVTYKELYQEWFNAYVGTVEETT-SSQTKNIYRIHILPI---FGDKFIDQISPLDC 117 Query: 120 RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK-RKTEGIRPWTKED 178 ++ + + T + Q + +F +A+ Y+ NP +V PK +KT W+ E+ Sbjct: 118 QNFITQKSQTFKNIKQIKSYTSKIFDFAINMNYIDRNPMKNVIMPKIKKTRSDNFWSLEE 177 Query: 179 MQQFKSFWS--EGSQPRLAFEFLLYSGLRCSDSCRAGVQH----------------LQNN 220 + F E + F L +SGLR + + Sbjct: 178 LHHFLDIVKETEPFKHFALFRLLAFSGLRKGELYALKWADINFDSNLLNIDKSLGRIDGK 237 Query: 221 IFSIKTQKTGTIITVELPDGFMKLLA-----------MTPIGK--------ETFFINNDK 261 T+ ++ T+ L D + ++ P+ K ++ +NDK Sbjct: 238 AIEKSTKNESSVRTIYLDDETIDIIKQWRNFYLKEQSQLPLTKLNISNEYMFSYISSNDK 297 Query: 262 -QKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319 + ++A + K + S HG R AT+ ++ G G + Sbjct: 298 IEPLHADYINNVLNRIIKKHKLKPISPHGFRHTHATLMSEIGIDPSNTSKRLGHASSQVT 357 Query: 320 -ETYTK 324 + YT Sbjct: 358 LDVYTH 363 >gi|15842199|ref|NP_337236.1| integrase [Mycobacterium tuberculosis CDC1551] gi|13882487|gb|AAK47050.1| integrase [Mycobacterium tuberculosis CDC1551] Length = 386 Score = 94.7 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 51/286 (17%), Positives = 98/286 (34%), Gaps = 31/286 (10%) Query: 85 GSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRK-HTPSSAIQFLTSMRV 142 + +R + D I+ D D R IT +R + TP+ + +R Sbjct: 99 RGIKDRTRAHYRKLLDNHILATFADTDLRDITPAAVRRWYATTAVGTPTMRAHSYSLLRA 158 Query: 143 LFKWAVRQEYVAINPCL-SVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY 201 + + A+ + + NPC S R+ IRP T ++++ + Q + + Sbjct: 159 IMQTALADDLIDSNPCRISGASTARRVHKIRPATLDELETITKAMPDPYQAFV--LMAAW 216 Query: 202 SGLRCSDSCRAGVQHLQ---------------NNIFSIKTQKTGTII-TVELPDGFMKLL 245 +R + + + F + T K+ + + +P + + Sbjct: 217 LAMRYGELTELRRKDIDLHGEVARVRRAVVRVGEGFKVTTPKSDAGVRDISIPPHLIPAI 276 Query: 246 ------AMTPIGKETFF--INNDKQKMNATQFSIWFKAKATKAG-VNKSAHGVRKFSATI 296 + P + F +N+ + + + F AG + H +R A + Sbjct: 277 EDHLHKHVNPGRESLLFPSVNDPNRHLAPSALYRMFYKARKAAGRPDLRVHDLRHSGAVL 336 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGAD-RIRLGIKNSRRISS 341 +A GAT ELM G T A Y A R R +++ Sbjct: 337 AASTGATLAELMQRLGHSTAGAALRYQHAAKGRDREIAALLSKLAE 382 >gi|312946178|gb|ADR27005.1| putative defective integrase; Qin prophage [Escherichia coli O83:H1 str. NRG 857C] Length = 426 Score = 94.7 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 44/317 (13%), Positives = 96/317 (30%), Gaps = 64/317 (20%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK-ITTKHIRSGVESR-- 126 T+K L ++ +A S ++ + I+ G+ + I + + + Sbjct: 80 TIKELAEKFLALKE-TEVAKTSLNTYRAVIKNILSIIGEKNLASSINKEKLLEVRKELLT 138 Query: 127 --------------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172 + + ++T++ +F++ V Y+ NP + K Sbjct: 139 GYQIPKSNYIVTQPGRSAVTVNNYMTNLNAVFQFGVDNGYLPDNPFKGISPLKESRTIPD 198 Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIK----- 225 P ++E+ + Q + + +Y+G+R + C G + + N I+ Sbjct: 199 PLSREEFIRLIDAC-RNQQAKNLWCVSVYTGVRPGELCALGWEDIDLKNGTMMIRRNLAK 257 Query: 226 --------TQKTGTIITV--ELPDGFMKLLAMTPIGKETFF------------------- 256 T +I + D + +T + KE Sbjct: 258 DRFTVPKTQAGTNRVIHLIKPAIDALRSQMTLTRLSKEHIIDVHLREYGRTEKQKCTFVF 317 Query: 257 -------INNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELM 308 + N + A +AG+ ++ ++ R A S AGA + Sbjct: 318 QPEVSARVKNYGDHFTVDSIRQMWDAAIKRAGLRHRKSYQSRHTYACWSLTAGANPAFIA 377 Query: 309 ATYGWKTVDQA-ETYTK 324 G + Y K Sbjct: 378 NQMGHADAQMVFQVYGK 394 >gi|239625431|ref|ZP_04668462.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239519661|gb|EEQ59527.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 278 Score = 94.7 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 41/265 (15%), Positives = 80/265 (30%), Gaps = 19/265 (7%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134 +SEY + N+ + G+ K + + + P+S Sbjct: 6 LSEYETYLRSEERSANTIAKYIRDLRAFFSFMGNEPLCKEAVVSFKGYLTE-SYAPASVN 64 Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK----TEGIRPWTKEDMQQFKSFWSEGS 190 L ++ +W + V+ K + T + T+E+ + E Sbjct: 65 SMLAAVNGFLEW---SGMAQ----MKVKPLKIQKCLFTRPEKELTQEEYWRLIKAAEEKG 117 Query: 191 QPRLAFEF--LLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE--LPDGFMKLLA 246 RL+ + +G+R S+ V+ ++ + + ++ + L + Sbjct: 118 NDRLSMLLQTICATGIRVSEVRHITVEAVRAGQAKVDCKGKNRVVFLPKVLCRALQRYCR 177 Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISADAGAT 303 I F + +N T KA +AGV H +R A Sbjct: 178 RYGIDIGPVFKTASGKPLNRTNIWRDMKALCKRAGVEPGKVFPHNLRHLFARTYYKLEKD 237 Query: 304 AHELMATYGWKTVDQAETYTKGADR 328 L G +V YT + R Sbjct: 238 LSRLADLLGHSSVTTTRIYTMESGR 262 >gi|4210823|emb|CAA11470.1| intI1 [Pseudomonas aeruginosa] Length = 337 Score = 94.7 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 42/306 (13%), Positives = 93/306 (30%), Gaps = 62/306 (20%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHT 129 ++ + R+ + ++ + ++ + IR G + + + + + RK + Sbjct: 16 VLDQLRERIRYLHYSLRTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75 Query: 130 PSSAIQFLTSMRVLFK--WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 S+ Q L ++ + ++ + RP+ T +++ + F Sbjct: 76 VSTHRQALAALLFFYGKVLCTDLPWLQ-----EIGRPRPSRRLPVVLTPDEVVRILGFL- 129 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQKTGTIITVELPDGFMKLL 245 EG RL + L +G+R S+ + V+ + ++ K + LP+ L Sbjct: 130 EGEH-RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPTL 188 Query: 246 AMTPIGKETFFINN---------------------------------------------D 260 +++ + Sbjct: 189 REQLSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVR 248 Query: 261 KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318 + M F FK +AG+ K + H +R AT +G + G V Sbjct: 249 RHHMYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVST 308 Query: 319 AETYTK 324 YT Sbjct: 309 TMIYTH 314 >gi|86143473|ref|ZP_01061858.1| tyrosine type site-specific recombinase [Leeuwenhoekiella blandensis MED217] gi|85829920|gb|EAQ48381.1| tyrosine type site-specific recombinase [Leeuwenhoekiella blandensis MED217] Length = 414 Score = 94.7 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 46/263 (17%), Positives = 96/263 (36%), Gaps = 28/263 (10%) Query: 107 GDFDYRKITTKHIRSGVESRKHTPS----SAIQFLTSMRVLFKWAVRQEYVAINPCLSVE 162 D+ R I I K + SA++++ + + + + A+ ++++ +P ++ + Sbjct: 154 EDYRLRDIDHNFIIKFEHFLKTKRNCNHNSALKYVNNFKKIVRIALANKWISHDPFINYK 213 Query: 163 RPKRKTEGIRPWTKEDMQQFKSFWSEGSQ---PRLAFEFLLYSGLRCSDSCRAGVQHLQN 219 K + T+E++ + R F F Y+GL SD + + Sbjct: 214 -VKFEPVEREFLTQEEIDALWEKELHFERLILVRDMFVFSCYTGLAYSDVEKLSKSDITI 272 Query: 220 N-----IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWF- 273 I KTG+ ++ L ++LA + + + Q S F Sbjct: 273 GIDGSKWIRIHRTKTGSRSSIPLLPVAEQILARY-ENHPQVEESERVIPVLSNQKSNAFL 331 Query: 274 KAKATKAGVNK--SAHGVRKFSAT-ISADAGATAHELMATYGWKTVDQAETYTKGADRI- 329 K A ++K + H R AT ++ G + G +++ + Y K DR Sbjct: 332 KEIAIMCDISKPLTTHLARHTFATTVTLTNGVPIETVSRMLGHQSLRTTQHYAKIVDRKI 391 Query: 330 ---------RLGIKNSRRISSVV 343 +L + S++ S+ Sbjct: 392 SDDMNILKEKLAAQKSKKESNTQ 414 >gi|194429446|ref|ZP_03061969.1| integrase [Escherichia coli B171] gi|194432824|ref|ZP_03065108.1| integrase [Shigella dysenteriae 1012] gi|194412507|gb|EDX28806.1| integrase [Escherichia coli B171] gi|194418812|gb|EDX34897.1| integrase [Shigella dysenteriae 1012] gi|195183060|dbj|BAG66620.1| putative integrase [Escherichia coli O111:H-] gi|332090165|gb|EGI95264.1| integrase [Shigella dysenteriae 155-74] Length = 334 Score = 94.7 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 55/311 (17%), Positives = 107/311 (34%), Gaps = 14/311 (4%) Query: 19 GKIIYYFRKGHGRRIRLPYPHESTFIP-AYMSALTGSTPKREYINSPRKKPTTLKWLISE 77 G+ + R + R+ + + A + + KREYI R + TL L+ Sbjct: 9 GRYLLDIRPNGRKGKRVRKVFDKKSVAVATERYIMANAEKREYIQGYRDR-RTLNDLLEL 67 Query: 78 Y-RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQF 136 + A R + +++ D K+ RS + PSSA ++ Sbjct: 68 WWMYHGQHRRKAEEDRKQLRNIINELGADMQAVDLDKLKIIAWRSQKIAEGLKPSSANRY 127 Query: 137 LTSMRVLFKWAVRQE-YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA 195 + + +F + + A +P + + +++++ EG R+A Sbjct: 128 MNRLSGMFTVLKKIGLWDAEHPVRGISILYVSPREMAFLSQKEVALLLDTL-EGDYWRVA 186 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF 255 L +G R S++C+ + + +N + K G TV + + + G Sbjct: 187 L-LCLSTGARWSEACKLRGEQIVHNRVTFLETKNGRKRTVPISQAVCEAIKTRETGG--L 243 Query: 256 FINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKT 315 F ++ F + K ++AH +R A+ G L G T Sbjct: 244 FEVKYRE------FCLALKRVKPDLPKGQAAHVLRHTFASHFVMNGGNIIALQKILGHAT 297 Query: 316 VDQAETYTKGA 326 + Q Y A Sbjct: 298 IQQTMAYAHFA 308 >gi|187476668|ref|YP_784691.1| site-specific tyrosine recombinase XerC [Bordetella avium 197N] gi|115421254|emb|CAJ47759.1| tyrosine recombinase [Bordetella avium 197N] Length = 325 Score = 94.7 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 41/281 (14%), Positives = 84/281 (29%), Gaps = 42/281 (14%) Query: 85 GSLAVNSRISFESYFDQIIRKS--GDFDYRKITTKHIR---SGVESRKHTPSSAIQFLTS 139 + ++ ++ + + + + ++ HIR + + ++ P S + L + Sbjct: 19 RRYSSHTLAAYRHDLESLAALATQAGLALQDLSVSHIRQQIARLHAQGLGPRSLARRLAA 78 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-------GSQP 192 R ++W +A NP V PK + + + Q + Sbjct: 79 WRGFYQWWAPHIGLARNPVAGVRAPKAPRALPKALSVDQAQAMLDHAPAQLSTDPVSLRD 138 Query: 193 RLAFEFLLYSGLRCSDSCRA--------------GVQHLQNNIFSIKTQKTGTIITVELP 238 E L SGLR S+ G + + + K G V + Sbjct: 139 HAISELLYSSGLRLSELVSLDTHYHRHTGSEEPAGWLN-RAEAEVVVLGKGGKRRIVPVG 197 Query: 239 DGFMKLL------------AMTPIGKE-TFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284 + L A TP F+ +++ + A +AGV Sbjct: 198 SAALAALDKWLQARPTLLSAATPAADSYALFLGARGARISPRVVQLQLARLAQQAGVPAH 257 Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R A+ + + G + + YT+ Sbjct: 258 VHPHVLRHSFASHVLQSAQDLRAVQELLGHANIATTQVYTR 298 >gi|323180893|gb|EFZ66431.1| phage integrase family protein [Escherichia coli 1180] Length = 431 Score = 94.7 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 45/317 (14%), Positives = 97/317 (30%), Gaps = 64/317 (20%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK-ITTKHIRSGVESR-- 126 T+K L ++ +A S ++ + I+ G+ + I + + + Sbjct: 85 TIKELAEKFLALKE-NEVAKTSLNTYRAVIKNILSIIGEKNLASSINKEKLLEVRKELLT 143 Query: 127 --------------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172 + + ++T++ +F++ V Y+A NP + K Sbjct: 144 GYQIPKSNYIVTQPGRSAVTVNNYMTNLNAVFQFGVDNGYLADNPFKGISPLKESRTIPD 203 Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIK----- 225 P ++E+ + Q + + +Y+G+R + C G + + N I+ Sbjct: 204 PLSREEFIRLIDAC-RNQQAKNLWCVSVYTGVRPGELCALGWEDIDLKNGTMMIRRNLAK 262 Query: 226 --------TQKTGTIITV--ELPDGFMKLLAMTPIGKETFF------------------- 256 T +I + D + +T + KE Sbjct: 263 DRFTVPKTQAGTNRVIHLIKPAIDALRSQMTLTRLSKEHIIDVHLKEYGRTEKQKCTFVF 322 Query: 257 -------INNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELM 308 + N + A +AG+ ++ ++ R A S AGA + Sbjct: 323 QPEVSARVKNYGDHFTVDSIRQMWDAAIKRAGLRHRKSYQSRHTYACWSLTAGANPAFIA 382 Query: 309 ATYGWKTVDQA-ETYTK 324 G + Y K Sbjct: 383 NQMGHADAQMVFQVYGK 399 >gi|284038161|ref|YP_003388091.1| integrase family protein [Spirosoma linguale DSM 74] gi|283817454|gb|ADB39292.1| integrase family protein [Spirosoma linguale DSM 74] Length = 372 Score = 94.7 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 39/269 (14%), Positives = 83/269 (30%), Gaps = 25/269 (9%) Query: 92 RISFESYFDQIIR-KSGDFDYRKITTKHIRSGVE-------SRKHTPSSAIQFLT---SM 140 + +ES + G +T K R R P + ++ Sbjct: 108 KDGWESALHYLRDFTGGQLKLSNLTPKKCRDFRAYMMDAKSQRNEEPLAVNSTVSYFNKF 167 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF-KSFWSEGSQPRLAFEFL 199 + K A + ++ +E K + T ++Q ++ + A F Sbjct: 168 KAALKQAYIDGLINVDLNAKIESIKPEETRREYLTLAELQTLVQTDLPALPILKQAALFS 227 Query: 200 LYSGLRCSDSCRAGVQHLQ-----NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET 254 +GLR SD + ++ QKT + + + + + LL + Sbjct: 228 ALTGLRYSDIEALTWEQIRHDASSGYFIHFTQQKTRGVEVLPISELAVALLGTRLGDSQP 287 Query: 255 FFINNDKQKMNATQFSIWF-KAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATY 311 + + K AG+ K + H R AT+ G + + Sbjct: 288 VL-----PGLIYSAHWNKILKQWVKDAGITKPITFHSFRHTYATLQLSLGTDIYTVSKML 342 Query: 312 GWKTVDQAETYTKGADRIRLGIKNSRRIS 340 G + + + Y K D+ + + +++ Sbjct: 343 GHRELKTTQIYAKIVDQSKRDAADKIKLT 371 >gi|191168738|ref|ZP_03030516.1| Int [Escherichia coli B7A] gi|331658405|ref|ZP_08359367.1| integrase [Escherichia coli TA206] gi|190901228|gb|EDV60999.1| Int [Escherichia coli B7A] gi|323172004|gb|EFZ57648.1| integrase [Escherichia coli LT-68] gi|331056653|gb|EGI28662.1| integrase [Escherichia coli TA206] Length = 334 Score = 94.7 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 55/311 (17%), Positives = 107/311 (34%), Gaps = 14/311 (4%) Query: 19 GKIIYYFRKGHGRRIRLPYPHESTFIP-AYMSALTGSTPKREYINSPRKKPTTLKWLISE 77 G+ + R + R+ + + A + + KREYI R + TL L+ Sbjct: 9 GRYLLDIRPNGRKGKRVRKVFDKKSVAVATERYIMANAEKREYIQGYRDR-RTLNDLLEL 67 Query: 78 Y-RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQF 136 + A R + +++ D K+ RS + PSSA ++ Sbjct: 68 WWMYHGQHRRKAEEDRKQLRNIINELGADMQAVDLDKLKIIAWRSQKIADGLKPSSANRY 127 Query: 137 LTSMRVLFKWAVRQE-YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA 195 + + +F + + A +P + + +++++ EG R+A Sbjct: 128 MNRLSGMFTVLKKIGLWDAEHPVRGISILYVSPREMAFLSQKEVALLLDTL-EGDYWRVA 186 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF 255 L +G R S++C+ + + +N + K G TV + + + G Sbjct: 187 L-LCLSTGARWSEACKLRGEQIVHNRVTFLETKNGRKRTVPISQAVCEAIKTRETGG--L 243 Query: 256 FINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKT 315 F ++ F + K ++AH +R A+ G L G T Sbjct: 244 FEVKYRE------FCLALKRVKPDLPKGQAAHVLRHTFASHFVMNGGNIIALQKILGHAT 297 Query: 316 VDQAETYTKGA 326 + Q Y A Sbjct: 298 IQQTMAYAHFA 308 >gi|300765731|ref|ZP_07075708.1| integrase [Listeria monocytogenes FSL N1-017] gi|300513604|gb|EFK40674.1| integrase [Listeria monocytogenes FSL N1-017] Length = 400 Score = 94.7 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 55/362 (15%), Positives = 103/362 (28%), Gaps = 60/362 (16%) Query: 23 YYFRKG-----HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS- 76 + R G IR + L + E T K + Sbjct: 22 WRMRVTVGYDYKGTPIRAGRTTRTKNEREREKELRNFITELEQNGYTAPARMTFKAFVEN 81 Query: 77 EYRKSAHWGSLAVNSRISF-ESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH------- 128 EY +L V + + +S + G KITT HI + V + Sbjct: 82 EYMPKHAQNNLEVKTWTEYYKSIVARAYPAFGGVQMDKITTLHIVNLVAKLQKPGARLDV 141 Query: 129 -------------TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175 +P S ++ +F+ AV + + INP V PK +T Sbjct: 142 KPTDSDEKKNKPLSPRSIRNIYFAINSVFETAVEWKVIPINPAEGVRLPKTTKRPPTIYT 201 Query: 176 KEDMQQFKSFW-SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKT------ 226 +++ + E + ++ L SG R ++ V+H+ + + + Sbjct: 202 PAEIELLNAALVKEPLRLQVMIYIALISGCREAELAALEVKHVNLIEDEITFEQTLVAKA 261 Query: 227 ---------QKTGTIITVELPDGFMKLLAMTP-------------IGKETFFINNDKQKM 264 K V +P L+ + F N + + + Sbjct: 262 GEGLLLKESTKNDVAGIVSIPAWLTNLIETYISNEVLDLKTEGKWANHKFLFANMEGKPI 321 Query: 265 NATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGW-KTVDQAETY 322 +K + + H +R SAT+ + G + +V + Y Sbjct: 322 RPDSIYQRWKRFLERHNLPVIRFHDLRHTSATLLLNKGRDIKIIQERLRHKSSVTTSNIY 381 Query: 323 TK 324 Sbjct: 382 AH 383 >gi|326789825|ref|YP_004307646.1| integrase family protein [Clostridium lentocellum DSM 5427] gi|326540589|gb|ADZ82448.1| integrase family protein [Clostridium lentocellum DSM 5427] Length = 376 Score = 94.7 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 63/354 (17%), Positives = 119/354 (33%), Gaps = 62/354 (17%) Query: 18 HGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTT-----LK 72 HG + + FR ++ P+ F A + ++ R T Sbjct: 6 HGNV-WRFRI-----MKDGIPYTKLFEGTEKKAKEAHEAFK--VDVKRGNVGTNENMKFN 57 Query: 73 WLI----SEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRK 127 L +Y K + ++ +++ ++ ++ GD I HI+ V Sbjct: 58 ELCQLVTDQYVK----VNCKYSTVEFYKNTYNTHLLPFFGDKKLSSIKPLHIQQFVTHLS 113 Query: 128 H---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP---KRKTEGIRPWTKEDMQQ 181 PS+ L+ ++ F+ AV+ E + NPC+ V+RP K + G + T ++M++ Sbjct: 114 ELDLAPSTVSNNLSCLKKTFEMAVKWELIIKNPCMYVDRPQKRKYQNRG-QLMTVDEMKK 172 Query: 182 FKSFWS----EGSQPR-LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK-------T 229 + + S AF L GLR S+ + + I+ K Sbjct: 173 LLEIYENLSTKPSHMHKCAFYIALGCGLRNSEIRALTLDDIDFENNIIRVNKQFGKYTEK 232 Query: 230 GTII-------------TVELPDGFMKL-------LAMTPIGKETFFINNDKQKMNATQF 269 G ++ + PD + L P+ K+ F+ + + Sbjct: 233 GKVVEGYITTKSESSIRDIYAPDFVIAAIKNYISTLDCIPLSKQLFWSARTNKPVGRQCL 292 Query: 270 SIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 S +F + H +R AT+ A G L G ++ Y Sbjct: 293 STFFTNILKNNNLPVIDFHDLRHLHATLLASKGVNMKSLSNRMGHSKLETTNIY 346 >gi|268609386|ref|ZP_06143113.1| putative integrase [Ruminococcus flavefaciens FD-1] Length = 328 Score = 94.7 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 39/262 (14%), Positives = 86/262 (32%), Gaps = 14/262 (5%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHT 129 ++SE+ + + S + + G + ITT +R+ + +K + Sbjct: 53 ILSEFLSAKRIEGCSEKSLNYYSKTITAALDSIGKG-IKHITTDDLRAYLTDYQAEKKSS 111 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 + + F W ++Y+ +P + K +T E+++ + E Sbjct: 112 KVTMDNIRRILSSFFSWLEDEDYIIKSPVRRIHNVKTSKTIKETYTDENLELMRDNCVE- 170 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDG----FMKL 244 + + L +G+R + + N + K V Sbjct: 171 LRDLAMIDMLASTGMRVGEMVLLNRSDIDFNERECVVVGKGDKERMVYFDARTKLHLQSY 230 Query: 245 LAMTPIGKETFFINNDK--QKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAG 301 LA F++ +++ + + K G++K H R+ AT++ D G Sbjct: 231 LASRTDSDSALFVSLRSPHKRLTIGAIELRLREMGRKLGISKVHPHKFRRTLATMAIDKG 290 Query: 302 ATAHELMATYGWKTVDQAETYT 323 +L G + +D Y Sbjct: 291 MPIEQLQRLLGHQRIDTTLQYA 312 >gi|312984164|ref|ZP_07791510.1| phage integrase [Lactobacillus crispatus CTV-05] gi|310894383|gb|EFQ43459.1| phage integrase [Lactobacillus crispatus CTV-05] Length = 371 Score = 94.7 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 39/283 (13%), Positives = 87/283 (30%), Gaps = 30/283 (10%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK-HT 129 ++ K S+ +++++ F I + G + I + + Sbjct: 70 FADYCDKWIKIYKLPSVRPATKLTYNKRFKYIKQFFGTTKIKDIDRTMYQKFINWYGEDH 129 Query: 130 PSSAIQFLTSMRVLFKWA-VRQEYVAINPCLSVERPKR--KTEGIRPWTKEDMQQFKSFW 186 +S+ + + +A + ++ N + KT+ I + +++ S Sbjct: 130 ATSSTHKMNILVKSCVFAAIDDGLISRNFTNQITIHGNDDKTKKIEYLNEHEIKALVSEL 189 Query: 187 SEGSQPR-----LAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQ-----------K 228 QPR L LY+G R + + + SI K Sbjct: 190 KTNLQPRYTSNYLILA-GLYTGARLGELSALHWSDIDFKHKTISITKSWNQDRKEMGKPK 248 Query: 229 TGTIIT-VELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI--WFKAKATKAGVNKS 285 T + + + D + +++ F + KM T ++ K +KAG+ K Sbjct: 249 TKNSVRKIPVNDEILNIISQLKANHFDFVFATSRTKMPPTACAVNDALKRNLSKAGITKQ 308 Query: 286 ---AHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324 H +R + + G + + Y + Sbjct: 309 GYHFHSLRHTHVAYLISHHVDIYSISRRLGHAKISTTLDIYAQ 351 >gi|291542827|emb|CBL15937.1| Site-specific recombinase XerD [Ruminococcus bromii L2-63] Length = 397 Score = 94.7 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 48/331 (14%), Positives = 100/331 (30%), Gaps = 59/331 (17%) Query: 48 MSALTGSTPKREYINSPRKKP-TTLKWLISEYRKSAHWGSLA-----VNSRISFE----- 96 +A R S K P T+ L + + W + + ++ Sbjct: 52 RAAKEAELEARAIERSTGKAPAGTI--LFTAFLL--DWLDMTKKNVEETTYGAYSMTIKS 107 Query: 97 SYFDQIIRKSGDFDYRKITTKHIRSG----VESRKHTPSSAIQFLTSMRVLFKWAVRQEY 152 ++T KHI+ + R + ++ I ++R + A + Sbjct: 108 KIIPYFEEHHPGLALCEVTPKHIQDYYTYELTVRGVSANTVIHRHANIRKALQHAFKLGL 167 Query: 153 VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRA 212 + NP +ERPK++ + + ++ + G L + GLR S++ Sbjct: 168 IDTNPADRIERPKKEKFVGSVYEEYELNRLFEIVK-GDPIELGVILGAFYGLRRSEAVGL 226 Query: 213 GVQHLQ-----------------NNIFSI----KTQKTGTIITVELPDGFMKLLAMTPIG 251 + + I +T+ + ++ L F +LL Sbjct: 227 KWDAIDFKKKTITIRHTVTQATIDGKSKIIQKDRTKTKSSYRSLPLVPPFEELLHRLKAQ 286 Query: 252 KE----------------TFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSA 294 +E ++N + + + F K G+ K H +R A Sbjct: 287 QELNQKLCGRSYCKKYTGYIYVNEIGELVKPGYLTQHFPLILQKNGMRKIRFHDLRHSCA 346 Query: 295 TISADAGATAHELMATYGWKTVDQAE-TYTK 324 ++ G + E+ G + YT Sbjct: 347 SLLYANGVSLKEIQEWLGHSDISTTSNIYTH 377 >gi|241992592|gb|ACS73649.1| IntI1 [uncultured bacterium] Length = 337 Score = 94.7 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 42/306 (13%), Positives = 93/306 (30%), Gaps = 62/306 (20%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHT 129 ++ + R+ + ++ + ++ + IR G + + + + + RK + Sbjct: 16 VLDQLRERIRYLHYSLRTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75 Query: 130 PSSAIQFLTSMRVLFK--WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 S+ Q L ++ + ++ + RP+ T +++ + F Sbjct: 76 VSTHRQALAALLFFYGKVLCTDLPWLQ-----EIGRPRPSRRLPVVLTPDEVVRILGFL- 129 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQKTGTIITVELPDGFMKLL 245 EG RL + L +G+R S+ + V+ + ++ K + LP+ L Sbjct: 130 EGEH-RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSL 188 Query: 246 AMTPIGKETFFINN---------------------------------------------D 260 +++ + Sbjct: 189 REQLSRARAWWLKDQAEGRSGVALPDALEREYPRAGHSWPWFWVFAQHTHSTDPRSGVVR 248 Query: 261 KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318 + M F FK +AG+ K + H +R AT +G + G V Sbjct: 249 RHHMYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVST 308 Query: 319 AETYTK 324 YT Sbjct: 309 TMIYTH 314 >gi|284991405|ref|YP_003409959.1| integrase family protein [Geodermatophilus obscurus DSM 43160] gi|284064650|gb|ADB75588.1| integrase family protein [Geodermatophilus obscurus DSM 43160] Length = 377 Score = 94.7 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 45/346 (13%), Positives = 108/346 (31%), Gaps = 44/346 (12%) Query: 22 IYY----FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISE 77 +Y +R G R + + L + E + T+ + + Sbjct: 18 RWYSALTYRDDFGEVKRREVSGRTQ--AEVRAKLRELRERVEAGAPVKDASITMAAWLED 75 Query: 78 YR-KSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKH---TPSS 132 + K+ + + + ++ K G ++ ++ + V +++ + SS Sbjct: 76 WTTKALPASDRKQATIDLYATIARSHLVPKLGSLPLDRLRPSNVEALVLAKRRAGLSASS 135 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP 192 +R AVR + NP V+RP + + + + + G + Sbjct: 136 VRTIYAVLRAALDVAVRDGLIQRNPAALVKRPAVERKDAGYLSAQQAEALLEAV-RGDRL 194 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK------------------TQKTGTIIT 234 + +L +GLR ++ + + + ++ T+K+ + Sbjct: 195 EALYRVMLATGLRRGEALALHWRDVDLDAAVVRVRWTLSRTSAGLELGEPKTEKSRRTVP 254 Query: 235 VELP--DGFMKLLAMTPIGKET----------FFINNDKQKMNATQFSIWFKAKATKAGV 282 + +P + + F + + F+A A +AG+ Sbjct: 255 LPVPAVETLRAHRKRQAAEQLAAGSLWQASGLVFTSEIGTPLEPRNVLRRFEALAERAGL 314 Query: 283 NK-SAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGA 326 H +R +A+ AG + G + A+ Y+ A Sbjct: 315 RGVHLHTLRHSAASFLLAAGTHTKVVQEHLGHSSYAITADIYSHVA 360 >gi|134101615|ref|YP_001107276.1| phage integrase family site specific recombinase [Saccharopolyspora erythraea NRRL 2338] gi|133914238|emb|CAM04351.1| site-specific recombinase, phage integrase family [Saccharopolyspora erythraea NRRL 2338] Length = 316 Score = 94.7 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 48/298 (16%), Positives = 93/298 (31%), Gaps = 29/298 (9%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD-----------FDYRKITTKH 118 T + ++ +S G+ +R ++ Q+ R + D ++ H Sbjct: 13 TWAGYLRDWDRSLRSGNRPETTRYNYVLAAAQLARYLAEHAPDPEADAAAEDPAEVAKAH 72 Query: 119 IRSGVESRKHTPSSAIQFLT--SMRVLFKWA-VRQEYVAINPCLSVERPKRKTEGIRPWT 175 I + T S+A +++ LFKW + +E + +P V PK T+ + Sbjct: 73 IEAFQAWMIETRSAATAVNKHKALQQLFKWLMLDEEEIDRSPMERVRLPKAPTKLVPVLE 132 Query: 176 KEDMQQFKSFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ---------NNIF 222 +E + + + +G R ++ ++ + Sbjct: 133 EEATTRLLEVCKGKDFLSLRDQAIIRLFCNTGARLAEVAHLRLEDVDLKTESVTLYGKGG 192 Query: 223 SIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK-QKMNATQFSIWFKAKATKAG 281 ++ + G L ++ + Q +NA I K +AG Sbjct: 193 KVRRVRMGARTARALSRYLRARAKRKGADLPNLWLADRGGQALNANGIKIRLKRLGQRAG 252 Query: 282 VNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRR 338 ++ AH R A AG +LM GW + Y A R R Sbjct: 253 LDHVHAHRWRHTYAHQWKRAGGDTGDLMLLLGWSSDAMPRHYGASAAAERAQESQVRM 310 >gi|28868299|ref|NP_790918.1| integrase/recombinase XerD [Pseudomonas syringae pv. tomato str. DC3000] gi|28851536|gb|AAO54613.1| integrase/recombinase XerD, putative [Pseudomonas syringae pv. tomato str. DC3000] Length = 296 Score = 94.7 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 52/283 (18%), Positives = 90/283 (31%), Gaps = 30/283 (10%) Query: 89 VNSRISFESY---FDQIIRKSGDFDYRKITTKHIRSGVESRKHT--PSSAIQFLTSMRVL 143 N+R ++ F + G +++ H+ + +E + T S Q L ++R L Sbjct: 14 PNTRRAYARATQEFLTWCQVVGVPSLTEVSPLHVATWIELQMQTLAAPSVKQRLAAIRHL 73 Query: 144 FKWAVRQEYVAINPCLSVERPKR-----KTEGIRPWTKEDM-QQFKSFWSEGSQPRLAFE 197 F W V + V NP SV P KT + P + G + R Sbjct: 74 FDWLVVGQVVPHNPAASVRGPSHTSRTGKTPVLEPLEARQLLDSIDICTPAGLRDRALIA 133 Query: 198 FLLYSGLRCSDSCRAGVQH--LQNNIFSIK-TQKTGTIITVELPDGFMKLLAM------- 247 +++S R + V+ +QN ++ +K G + L Sbjct: 134 LMVFSFARIGAALAMKVEDVYIQNQRLWVRLKEKGGKQHVMPCQHSLEAYLHAYLVETGI 193 Query: 248 --TPIGKETFFINNDKQKMNATQFSI-----WFKAKATKAGVNKSA--HGVRKFSATISA 298 P G I ++++ + +A AG+ S H R T Sbjct: 194 DNDPKGPLFRTIGRGTEQLSVNALPQANAHAMVRRRALAAGIKTSIGNHTFRATGITAYL 253 Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341 G T A + + Y + D I L R+ Sbjct: 254 KNGGTLENAAAMANHASTRTTQLYDRRRDEISLDEVERIRLDR 296 >gi|327490261|gb|EGF22049.1| phage integrase family integrase/recombinase [Streptococcus sanguinis SK1058] Length = 328 Score = 94.7 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 36/279 (12%), Positives = 89/279 (31%), Gaps = 15/279 (5%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES----RKHT 129 L+ + + + S ++ + ++ R +TT +R+ + RK + Sbjct: 53 LLELFISAKRIEGCSEKSLKYYKIVIENMLTSL-KTSIRDLTTSDLRTYLARYQQERKSS 111 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 + F W ++Y+ +P + + K ++ E ++ + + Sbjct: 112 KVTIDNMRRIFSSFFGWLEDEDYILKSPVRRIHKIKTDKTIKETFSDEGLELLRDACDK- 170 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG-----FMKL 244 + + L +G+R + R + + G + D + Sbjct: 171 IRDLAMIDLLASTGMRVGELVRLNREDINFYERECVVFGKGNSERIVYFDARTKIHLINY 230 Query: 245 LAMTPIGKETFF--INNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAG 301 L F +++ ++ + KA +NK H R+ AT + D G Sbjct: 231 LDSRQDDNPALFVSLSSPHDRLLIGGVETRLRQLGQKADLNKVHPHKFRRTLATRAIDKG 290 Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340 ++ G +D Y ++ + + + I Sbjct: 291 MPIEQVQHLLGHVKIDTTMHYA-MVNQANVKNSHRKYIG 328 >gi|317476899|ref|ZP_07936142.1| phage integrase [Bacteroides eggerthii 1_2_48FAA] gi|316907074|gb|EFV28785.1| phage integrase [Bacteroides eggerthii 1_2_48FAA] Length = 368 Score = 94.7 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 38/214 (17%), Positives = 82/214 (38%), Gaps = 14/214 (6%) Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 + +SA + ++ R L K A +++ + N +++ + K + T ++++ + + Sbjct: 157 SRNSAAGYFSTFRALLKIAYQEKMLRENLNDFIDKIEWKEVKKQYLTLAEVKKLAATPCK 216 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-----IFSIKTQKTGTIITVELPDGFMK 243 + A F +GLR SD + +++ I T+KT T T+ + + ++ Sbjct: 217 IPVLKQASLFSCMTGLRISDILQLTWDNIEVGPDNGYYIRICTEKTETEATLPISNEALE 276 Query: 244 LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAG 301 L P F + + + K ++AG+ K + H R A I G Sbjct: 277 -LCGIPDSGRVF------KGLTRAMTNQPLKQWISEAGIKKHITFHCFRHSYAVIQISLG 329 Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335 + + K V + Y + + N Sbjct: 330 TDIYTVSKMLTHKNVSTTQIYADLVNSKKRETAN 363 >gi|302387143|ref|YP_003822965.1| integrase family protein [Clostridium saccharolyticum WM1] gi|302197771|gb|ADL05342.1| integrase family protein [Clostridium saccharolyticum WM1] Length = 407 Score = 94.7 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 46/278 (16%), Positives = 88/278 (31%), Gaps = 24/278 (8%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRK 127 + I + + A + + G IT +HI S V Sbjct: 110 FRQAILSFTDHCKKRNNADQTIQRRIRVIHKFFEHLTGSGVDACNDITPQHISSFVTGLA 169 Query: 128 -HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP--WTKEDMQQFKS 184 ++ ++ Q+L S+RV FK + SV + P W+ D++Q S Sbjct: 170 GYSKKTSDQYLESLRVFFKSLYFSGQRKDDLSKSVPTLYYPKQDRIPSVWSANDIEQLLS 229 Query: 185 FW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELP 238 +G + + GLR SD ++++ + QKTG + + + Sbjct: 230 VIDRGNPKGKRDYALIFLVTQLGLRTSDVLNLKLENINWSESRIEFVQQKTGISVNLPIV 289 Query: 239 DGFMKLL-----AMTPIGKETFFINNDKQKMNATQFSI-WFKAKATKAGV------NKSA 286 + + P E + Q + + KAG+ + Sbjct: 290 EDLGMAIIDYLKYGRPKSNEPYLFLKHIQPFDRMKNGHYLITQYLVKAGIPLKTAKHHGL 349 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R A+ + + + G TV+ + Y Sbjct: 350 HSLRHTLASRLLEQDVPLEIISSILGHTTVESTKPYLH 387 >gi|300821556|ref|ZP_07101703.1| site-specific recombinase, phage integrase family [Escherichia coli MS 119-7] gi|300526059|gb|EFK47128.1| site-specific recombinase, phage integrase family [Escherichia coli MS 119-7] Length = 431 Score = 94.7 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 45/317 (14%), Positives = 97/317 (30%), Gaps = 64/317 (20%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK-ITTKHIRSGVESR-- 126 T+K L ++ +A S ++ + I+ G+ + I + + + Sbjct: 85 TIKELAEKFLALKE-TEVAKTSLNTYRAVIKNILSIIGEKNLASSINKEKLLEVRKELLT 143 Query: 127 --------------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172 + + ++T++ +F++ V Y+A NP + K Sbjct: 144 GYQIPKSNYIVTQPGRSAVTVNNYMTNLNAVFQFGVDNGYLADNPFKGISPLKESRTIPD 203 Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIK----- 225 P ++E+ + Q + + +Y+G+R + C G + + N I+ Sbjct: 204 PLSREEFIRLIDAC-RNQQAKNLWCVSVYTGVRPGELCALGWEDIDLKNGTMMIRRNLAK 262 Query: 226 --------TQKTGTIITV--ELPDGFMKLLAMTPIGKETFF------------------- 256 T +I + D + +T + KE Sbjct: 263 DRFTVPKTQAGTNRVIHLIKPAIDALRSQMTLTRLSKEHIIDVHLREYGRTEKQKCTFVF 322 Query: 257 -------INNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELM 308 + N + A +AG+ ++ ++ R A S AGA + Sbjct: 323 QPEVSARVKNYGDHFTVDSIRQMWDAAIKRAGLRHRKSYQSRHTYACWSLTAGANPAFIA 382 Query: 309 ATYGWKTVDQA-ETYTK 324 G + Y K Sbjct: 383 NQMGHADAQMVFQVYGK 399 >gi|257068693|ref|YP_003154948.1| tyrosine recombinase XerD subunit [Brachybacterium faecium DSM 4810] gi|256559511|gb|ACU85358.1| tyrosine recombinase XerD subunit [Brachybacterium faecium DSM 4810] Length = 332 Score = 94.7 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 42/290 (14%), Positives = 89/290 (30%), Gaps = 39/290 (13%) Query: 74 LISEYRKSAH-WGSLAVNSRISFESYFDQIIRKSG--DFDYRKITTKHIRSGVESRKHTP 130 ++ +Y L+ N+ ++ + + + D D + + + ++S + Sbjct: 22 ILEQYLSHLRIERGLSANTLAAYRRDLRRYLAELARRDIDATAVDPQQLGRWLQSLRTGA 81 Query: 131 --------SSAIQFLTSMRVLFKWAVRQEYVAI-NPCLSVERPKRKTEGIRPWTKEDMQQ 181 SSA + L ++R L + + + +P V P P ++ Sbjct: 82 DGGSVLSASSAARSLAAVRGLHSFLDAERVSSSGDPARLVPSPALPRRLPHPLAIAQVEA 141 Query: 182 F----------KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN-NIFSIKTQKTG 230 + + + R E L G R S++ V + ++ K Sbjct: 142 LIEAAGRPSTGRDATARALRDRALLEVLYGLGARISEATGLDVDDIDAQERAAVLRGKGD 201 Query: 231 TIITVELPDGFMKLL-----------AMTPIGKETFFINNDKQKMNATQFSIWFKAKATK 279 V + ++ L A G F+ + ++ + A Sbjct: 202 KHRVVPVGRFALEALEAYLTRGRPVLAARGTGTPAIFLGSRGTRLTRQAAWQVVQRAADA 261 Query: 280 AGV-----NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 A + S H +R AT GA + G +V + YT+ Sbjct: 262 AELSDLPEPISPHTLRHSYATHLLHGGADVRAVQELLGHASVTTTQLYTQ 311 >gi|74311839|ref|YP_310258.1| putative phage integrase protein [Shigella sonnei Ss046] gi|73855316|gb|AAZ88023.1| putative phage integrase protein [Shigella sonnei Ss046] Length = 358 Score = 94.7 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 43/280 (15%), Positives = 91/280 (32%), Gaps = 34/280 (12%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--K 127 T+ I Y+ ++ N+ + + I K G+ +ITT+HI ++ Sbjct: 75 TMADWIERYKTILIRRKVSRNTYKIRANQLETIKEKLGEILLTEITTRHIAEFLDLWIEG 134 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ-QFKSFW 186 + A + + +F+ A+ + ++ NP PK T+E ++ + + Sbjct: 135 GKNTMAGSMRSVLSDMFREAIVEGRISQNPVTPTRAPKIVV------TRERLKLKIYNCI 188 Query: 187 SEGSQPR-----LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGF 241 E + LA + L +G R D + ++ ++ KTG +I + L Sbjct: 189 REAADQLPAWFPLAMDLALVTGQRREDITNMRFSDIYDDRLHVRQIKTGMMIAIPLSLSL 248 Query: 242 MKL--------LAMTPIGKETFFINNDKQKMN------ATQFSIWFKAKATKAGV----- 282 + + + I+ +K + + F A G+ Sbjct: 249 PVAGLRLGTVVERCRLVSRGDYLISAGIRKNSPDGSIHPDGLTKKFVAARKFTGIQFSEN 308 Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 + H +R A G + + Y Sbjct: 309 PPTFHEIR-SLAGRLYKETCGEEFAQRLLGHTSEKTTKMY 347 >gi|241992572|gb|ACS73635.1| IntI1 [uncultured bacterium] Length = 315 Score = 94.7 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 42/306 (13%), Positives = 93/306 (30%), Gaps = 62/306 (20%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHT 129 ++ + R+ + ++ + ++ + IR G + + + + + RK + Sbjct: 16 VLDQLRERIRYLHYSLRTEQAYVHWVRAFIRSHGVRHPATLGSSEVEAFLSWLANERKVS 75 Query: 130 PSSAIQFLTSMRVLFK--WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 S+ Q L ++ + ++ + RP+ T +++ + F Sbjct: 76 VSTHRQALAALLFFYGKVLCTDLPWLQ-----EIGRPRPSRRLPVVLTPDEVVRILGFL- 129 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQKTGTIITVELPDGFMKLL 245 EG RL + L +G+R S+ + V+ + ++ K + LP+ L Sbjct: 130 EGEH-RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSL 188 Query: 246 AMTPIGKETFFINN---------------------------------------------D 260 +++ + Sbjct: 189 REQLSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVR 248 Query: 261 KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318 + M F FK +AG+ K + H +R AT +G + G V Sbjct: 249 RHHMYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVST 308 Query: 319 AETYTK 324 YT Sbjct: 309 TMIYTH 314 >gi|41179288|ref|NP_958506.1| putative integrase [Lactobacillus prophage Lj928] gi|42519337|ref|NP_965267.1| Lj928 prophage integrase [Lactobacillus johnsonii NCC 533] gi|38731417|gb|AAR27347.1| putative integrase [Lactobacillus prophage Lj928] gi|41583625|gb|AAS09233.1| Lj928 prophage integrase [Lactobacillus prophage Lj928] Length = 391 Score = 94.7 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 52/309 (16%), Positives = 106/309 (34%), Gaps = 50/309 (16%) Query: 65 RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGV 123 ++K + L + ++ + ++ + FD +I G+ KIT ++ Sbjct: 66 KQKQIKVAELRELWFENYK-TQVKESTANKNKQVFDNHVIPAFGNQYIDKITVAELQKWA 124 Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR-----PWTKED 178 + + + LF++ +R YV+ NP + PK+ + R +T+++ Sbjct: 125 DRKAKQIVKYRDAINEFNALFEYGIRLNYVSENPLKRIIIPKKTSRPRRDTEHNVYTQDE 184 Query: 179 MQQFKSFWSE-GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-------- 229 + QF + G P F+ L +GLR S++ + ++ KT Sbjct: 185 LNQFLEVAKDYGLVPYTYFKLLSATGLRKSEALALTWSDINLTAGTLSVNKTLAYGLNGK 244 Query: 230 ---------GTIITVELPDGFMKLL----AMTPIGKETFFINNDKQKMNATQFSIWFK-- 274 + + + DG ++L I + F N + ++ W K Sbjct: 245 TIIQPPKSPKSKRILPISDGLKEVLIDYKRKQKIISKELFHTNKGTYLRISKPDQWLKSI 304 Query: 275 ------AKATKAG-----------VNKSAHGVRKFSATIS-ADAGATAHELMATYGWKTV 316 KA A + + HG R AT+ A+ + G + + Sbjct: 305 YAKDHEEKAEYAKKYNLKEPQPDLRHITVHGFRHTFATLLIAETNVKPKTVQMLLGHENI 364 Query: 317 DQA-ETYTK 324 + YT Sbjct: 365 QMTLDIYTH 373 >gi|307138229|ref|ZP_07497585.1| putative defective integrase; Qin prophage [Escherichia coli H736] gi|331668249|ref|ZP_08369097.1| putative lambdoid prophage Qin defective integrase [Escherichia coli TA271] gi|284921484|emb|CBG34555.1| integrase [Escherichia coli 042] gi|323940346|gb|EGB36538.1| phage integrase [Escherichia coli E482] gi|331063443|gb|EGI35354.1| putative lambdoid prophage Qin defective integrase [Escherichia coli TA271] Length = 426 Score = 94.7 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 45/317 (14%), Positives = 97/317 (30%), Gaps = 64/317 (20%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK-ITTKHIRSGVESR-- 126 T+K L ++ +A S ++ + I+ G+ + I + + + Sbjct: 80 TIKELAEKFLALKE-TEVAKTSLNTYRAVIKNILSIIGEKNLASSINKEKLLEVRKELLT 138 Query: 127 --------------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172 + + ++T++ +F++ V Y+A NP + K Sbjct: 139 GYQIPKSNYIVTQPGRSAVTVNNYMTNLNAVFQFGVDNGYLADNPFKGISPLKESRTIPD 198 Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIK----- 225 P ++E+ + Q + + +Y+G+R + C G + + N I+ Sbjct: 199 PLSREEFIRLIDAC-RNQQAKNLWCVSVYTGVRPGELCALGWEDIDLKNGTMMIRRNLAK 257 Query: 226 --------TQKTGTIITV--ELPDGFMKLLAMTPIGKETFF------------------- 256 T +I + D + +T + KE Sbjct: 258 DRFTVPKTQAGTNRVIHLIKPAIDALRSQMTLTRLSKEHIIDVHLREYGRTEKQKCTFVF 317 Query: 257 -------INNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELM 308 + N + A +AG+ ++ ++ R A S AGA + Sbjct: 318 QPEVSARVKNYGDHFTVDSIRQMWDAAIKRAGLRHRKSYQSRHTYACWSLTAGANPAFIA 377 Query: 309 ATYGWKTVDQA-ETYTK 324 G + Y K Sbjct: 378 NQMGHADAQMVFQVYGK 394 >gi|241992610|gb|ACS73661.1| IntI1 [uncultured bacterium] Length = 315 Score = 94.7 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 43/306 (14%), Positives = 94/306 (30%), Gaps = 62/306 (20%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHT 129 ++ + R+ + ++ + ++ + IR G + + + + + RK + Sbjct: 16 VLDQLRERIRYLHYSLRTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75 Query: 130 PSSAIQFLTSMRVLFK--WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 S+ Q LT++ + ++ + RP+ T +++ + F Sbjct: 76 VSTHRQALTALLFFYGKVLCTDLPWLQ-----EIGRPRPSRRLPVVLTPDEVVRILGFL- 129 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQKTGTIITVELPDGFMKLL 245 EG RL + L +G+R S+ + V+ + ++ K + LP+ L Sbjct: 130 EGEH-RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSL 188 Query: 246 AMTPIGKETFFINN---------------------------------------------D 260 +++ + Sbjct: 189 REQLSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVR 248 Query: 261 KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318 + M F FK +AG+ K + H +R AT +G + G V Sbjct: 249 RHHMYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVST 308 Query: 319 AETYTK 324 YT Sbjct: 309 TMIYTH 314 >gi|329849596|ref|ZP_08264442.1| phage integrase family protein [Asticcacaulis biprosthecum C19] gi|328841507|gb|EGF91077.1| phage integrase family protein [Asticcacaulis biprosthecum C19] Length = 430 Score = 94.7 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 42/327 (12%), Positives = 99/327 (30%), Gaps = 46/327 (14%) Query: 58 REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK 117 + + ++K T+ L Y + A + I G ++ + Sbjct: 92 PQDAKAQKRKEMTVAELCDFYLEEGTTTKKASTLKSDGYRINRHIKPLLGKLKISEVNSS 151 Query: 118 HIRSGVESRKH------TPS--------------------------SAIQFLTSMRVLFK 145 HI + PS +A + + ++ +F Sbjct: 152 HIERFLRDVAAGKHGGRKPSKVEAKRTGLTAETRGRTDSNVRGGKGTATRTVITLSGIFT 211 Query: 146 WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE---GSQPRLAFEFLLYS 202 +AV+++ + +PC VE K + E++++ + L+ + Sbjct: 212 FAVKRKLRSDHPCRGVETYKAGKSERH-LSLEELKRLGQVMDLSHWNATAVAIIRCLILT 270 Query: 203 GLRCSDSCRAGVQ--HLQNNIFSIKTQKTG---TIITVELPDGFMKLLAMTPIGKETF-- 255 G R + N+ + KTG + + + + + + F Sbjct: 271 GCRKGEIEHLRRDAVDFSNHFLKLSDSKTGPKVVPVGLPALELLRPYVNASVKSEFVFPS 330 Query: 256 FINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKT 315 ++ +K + + K A + H +R A+++ + G T + G Sbjct: 331 AVDANKPFIGTPKIWTQIKLAADL--PKTTLHDLRHTFASLAIEDGKTLPIIGKILGHSD 388 Query: 316 VDQAETYTKGAD-RIRLGIKNSRRISS 341 + E Y D R + +++ Sbjct: 389 IKTTERYAHLTDTSARRAANDISVLAA 415 >gi|324012822|gb|EGB82041.1| site-specific recombinase, phage integrase family [Escherichia coli MS 60-1] Length = 358 Score = 94.7 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 43/276 (15%), Positives = 88/276 (31%), Gaps = 26/276 (9%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--K 127 T+ I Y+ ++ N+ + + I K G +ITT+HI ++ Sbjct: 75 TMADWIERYKTILIRRKVSRNTYKIRVNQLETIKEKLGGILLTEITTRHIAEFLDLWIEG 134 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK--RKTEGIRPWTKEDMQQFKSF 185 + A + + +F+ A+ + ++ NP PK E ++ T +++ Sbjct: 135 GKNTMAGSMRSVLSDMFREAIVEGRISQNPVTPTRAPKIVVTRERLKLKTYNCIREAADQ 194 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245 LA + L +G R D + ++ I+ KTG +I + L Sbjct: 195 LPAWFP--LAMDLALVTGQRREDITNMRFSEIYDDRLHIRQIKTGMMIAIPLSLSLPVAG 252 Query: 246 AMTP--------IGKETFFINNDKQKMN------ATQFSIWFKAKATKAGV-----NKSA 286 + + + I+ +K + + F A G+ + Sbjct: 253 LRLGAVVEQCRMVSRGDYLISAGIRKNSPDGSIHPDGLTKKFVAARKLTGIQFSENPPTF 312 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 H +R A G + + Y Sbjct: 313 HEIR-SLAGRLYKETCGEEFAQRLLGHTSEKTTKMY 347 >gi|294776304|ref|ZP_06741787.1| integron integrase [Bacteroides vulgatus PC510] gi|294449844|gb|EFG18361.1| integron integrase [Bacteroides vulgatus PC510] Length = 366 Score = 94.7 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 37/297 (12%), Positives = 90/297 (30%), Gaps = 22/297 (7%) Query: 41 STFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD 100 F Y + + K+ TL Y + + ++ ++ +YF Sbjct: 60 PDFYDRYSPHAYIDYSRVYVRHPKPKREYTLP---EGYLELLEQKRYSPSTIKTYRAYFS 116 Query: 101 QIIRKSGDFDYRKITTKHIRSGV----ESRKHTPSSAIQFLTSMRVLFKWAV--RQEYVA 154 + + ++ I + +K + S + +++ ++ +++Y Sbjct: 117 DFMEYHKGRNIDRLKVADINKYILYLVNEKKISVSQQNMRINAIKFYYEQVKGGKRQYYG 176 Query: 155 INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGV 214 + R K ++ ++ + S S R + +GLR S+ Sbjct: 177 -----GITRAKEYKSLPEVLSRNEVCRILSCLSNRKH-RCMISLIYSAGLRRSELLNLTP 230 Query: 215 QHLQNNIFSIKTQKTGTI-----ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF 269 + + + + G ++ +L + K F + +A+ Sbjct: 231 KDIISERMLVCIMGKGRKCRYSLLSEKLLKELREYFKEYRPQKWLFEGETPGEPYSASAL 290 Query: 270 SIWFKAKATKAGVNKSAHG--VRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 K A++AG+ H +R AT + G + G + Y Sbjct: 291 VKVLKEAASRAGIKHRVHVHMLRHSFATHLLEQGTDLRTIQELLGHNDIKTTSIYLH 347 >gi|29349957|ref|NP_813460.1| integrase [Bacteroides thetaiotaomicron VPI-5482] gi|29341868|gb|AAO79654.1| integrase [Bacteroides thetaiotaomicron VPI-5482] Length = 372 Score = 94.7 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 40/232 (17%), Positives = 83/232 (35%), Gaps = 12/232 (5%) Query: 111 YRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170 +R+ + R + +SA+ + ++ R K R + + N +++ + + Sbjct: 138 FREYLLNAKQLRRPERPISRNSAVGYWSTFRGFLKILYRNKLIHSNVNDFLDKIEPEDVV 197 Query: 171 IRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL-----QNNIFSIK 225 + +++ + + + A F + LR SD + + Sbjct: 198 KDYLSVDELYRLAETPCKIPVLKTASLFSCLTSLRISDILTLRWEEIVDFAAGGKCVHTV 257 Query: 226 TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284 TQKT T + + D ++L+ +P F K+ K AG+ K Sbjct: 258 TQKTKTEDIIPISDEALQLIGYSPEKTGLVF-KGLKRCWTQYP----MKEWIRAAGITKN 312 Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335 + H R+ AT+ A AG + + K++ + Y K D + N Sbjct: 313 ITFHSYRRTFATLQAAAGTDIRTIQSIMAHKSITTTQRYMKVVDSNKRKASN 364 >gi|56476174|ref|YP_157763.1| hypothetical protein ebA1360 [Aromatoleum aromaticum EbN1] gi|56312217|emb|CAI06862.1| similar to phage-related integrase [Aromatoleum aromaticum EbN1] Length = 411 Score = 94.7 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 47/292 (16%), Positives = 92/292 (31%), Gaps = 20/292 (6%) Query: 49 SALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD 108 + + + + +P TL +EY LA + + D + + G+ Sbjct: 85 AEIESGANPAATKRAFKAEP-TLTEFFAEYGTRHGEKKLAW--PADVQRFRDYLQKPMGN 141 Query: 109 FDYRKITTKHIRSGV---ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK 165 +I I + E + ++ +F AV + NP V+ Sbjct: 142 KRLSEIDRAMIAKALSDAEKAGKSVATVRNIRALASGVFGKAVEWGRLDFNPAQGVKVAG 201 Query: 166 RKTEGIRPWTKEDMQQ-FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQ--HLQNNIF 222 +K R +++ + F + E R L +G R ++ C L ++ Sbjct: 202 KKVSRDRFLQADELPRFFAAVAEEDDTMRDFILLALLTGARRANVCAMHWHELDLAAGVW 261 Query: 223 SIKTQKTGTIITVELPDGFMKLLAMT--PIGKETFFINNDKQKMNATQFSIWFKAKATKA 280 I K G TV L + +L G F + + A +A Sbjct: 262 RIPRTKNGEPQTVTLCPEAVMILEARKDATGGGFVFPGTGRTGHVVEPKKAVERVMA-RA 320 Query: 281 GVNK--------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 G+ + H +R+ + A GA+ + + K+ Y + Sbjct: 321 GIPYGRDVPNGATLHDLRRTLGSWQARTGASLAIIGKSLNHKSQQATAIYAR 372 >gi|323185883|gb|EFZ71240.1| phage integrase family protein [Escherichia coli 1357] Length = 426 Score = 94.7 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 45/317 (14%), Positives = 97/317 (30%), Gaps = 64/317 (20%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK-ITTKHIRSGVESR-- 126 T+K L ++ +A S ++ + I+ G+ + I + + + Sbjct: 80 TIKELAEKFLALKE-TEVAKTSLNTYRAVIKNILSIIGEKNLASSINKEKLLEVRKELLT 138 Query: 127 --------------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172 + + ++T++ +F++ V Y+A NP + K Sbjct: 139 GYQIPKSNYIVTQPGRSAVTVNNYMTNLNAVFQFGVDNGYLADNPFKGISPLKESRTIPD 198 Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIK----- 225 P ++E+ + Q + + +Y+G+R + C G + + N I+ Sbjct: 199 PLSREEFIRLIDAC-RNQQAKNLWCVSVYTGVRPGELCALGWEDVDLKNGTMMIRRNLAK 257 Query: 226 --------TQKTGTIITV--ELPDGFMKLLAMTPIGKETFF------------------- 256 T +I + D + +T + KE Sbjct: 258 DRFTVPKTQAGTNRVIHLIKPAIDALRSQMTLTRLSKEHIIDVHLREYGRTEKQKCTFVF 317 Query: 257 -------INNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELM 308 + N + A +AG+ ++ ++ R A S AGA + Sbjct: 318 QPEVSARVKNYGDHFTVDSIRQMWDAAIKRAGLRHRKSYQSRHTYACWSLTAGANPAFIA 377 Query: 309 ATYGWKTVDQA-ETYTK 324 G + Y K Sbjct: 378 NQMGHADAQMVFQVYGK 394 >gi|255100237|ref|ZP_05329214.1| putative tyrosine recombinase [Clostridium difficile QCD-63q42] Length = 304 Score = 94.7 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 44/265 (16%), Positives = 101/265 (38%), Gaps = 21/265 (7%) Query: 85 GSLAVNSRISF----ESYFDQIIRKSGDF-DYRKITTKHIRSGVESRKHTPSSAIQFLTS 139 L+ N+ S+ + Y + I +KS D + +E + ++ + ++S Sbjct: 15 KKLSENTVASYFMDIKKYMEYINQKSIKLVDIVENDIISYLIKLEKDNVSIATIARMISS 74 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS----QPRLA 195 ++ + A NP +++PK K E I T+E++++ +F + + + Sbjct: 75 IKSFHDYLFLNHICANNPAKDIKKPKIKKENINILTEEEIERLLNFPKLTTPKLIRDKAI 134 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ---KTGTIIT------VELPDGFMKLLA 246 FE L +G++ S+ ++ + +I I K +I + L + Sbjct: 135 FEVLYGTGIKVSELVEMNIEDIDLDIDYIYCNSCCKNQRVIPLCDITKLYLEKYLKEARP 194 Query: 247 MTPIGKE-TFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHG--VRKFSATISADAGAT 303 + E + F+++ Q+ K + A ++K+ + +R A + GA Sbjct: 195 KMAVEGEKSLFVSSLGQRFTRQGLWKVIKKYSNLANIDKNINPTMLRHSFAIHLLNEGAN 254 Query: 304 AHELMATYGWKTVDQAETYTKGADR 328 + G + + Y D+ Sbjct: 255 IAVVSKILGNVNLSSLQVYLNHIDK 279 >gi|320335754|ref|YP_004172465.1| integrase family protein [Deinococcus maricopensis DSM 21211] gi|319757043|gb|ADV68800.1| integrase family protein [Deinococcus maricopensis DSM 21211] Length = 291 Score = 94.7 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 36/257 (14%), Positives = 83/257 (32%), Gaps = 13/257 (5%) Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFL 137 + + L+ + + +++ + SG+ T HTPSS Sbjct: 10 FIGDREYQGLSPETLRYYRQCWERFKQYSGEEPTVDRMTLQQYLISLQATHTPSSIATRW 69 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFE 197 +++ KW +EY +P ++ P+ + +P ++ ++ + + + + Sbjct: 70 RGLKIFLKWCYVEEYSEFDPSR-LKNPRAPFKKKQPLSEIEVLKLLNAC-RNFRDKAIVA 127 Query: 198 FLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGK--- 252 L +G+R + C V + N ++ K G V ++ L + Sbjct: 128 LLFDTGIRSKELCNLTVGDVDLVNRCVYVRNGKGGRDRIVPFSPSALRDLRKWAQQRNVE 187 Query: 253 ----ETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHE 306 +N + +AG+ + H +R A + Sbjct: 188 SPWFFHVVKGEVGGALNRRWLHGLLMSAGKRAGLGEIVGPHKLRHSYARSYIASNGNPMA 247 Query: 307 LMATYGWKTVDQAETYT 323 L T G ++ + Y Sbjct: 248 LQETLGHSSIIVTQRYV 264 >gi|262383667|ref|ZP_06076803.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_33B] gi|262294565|gb|EEY82497.1| tyrosine type site-specific recombinase [Bacteroides sp. 2_1_33B] Length = 407 Score = 94.7 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 49/289 (16%), Positives = 101/289 (34%), Gaps = 39/289 (13%) Query: 86 SLAVNSRISFESYFDQIIR------KSGDFDYRKITTKHIRSG----VESRKHTPSSAIQ 135 + ++ +E + +IR D + K+ I + K ++ + Sbjct: 127 NREKSTAEQYEISLNHLIRFLRKKYNVSDVPFTKLDLSFIEAYDFYLRVELKLKSNTILG 186 Query: 136 FLTSMRVLFKWAVRQEYVAINPCLS--VERPKRKTEGIRPWTKEDMQQFKSF---WSEGS 190 + +R + K A+ + + +P ERPK + + T+E++ + Sbjct: 187 IVRHVRKMIKLAIAEGIIYRDPFDGYAPERPKAEQK---YLTREELDRLMKTRLDHPSRY 243 Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHL---QNNIFSIKT--QKTGTIITVELP----DGF 241 R F F +++GL D C +H+ + + I+T QKTGT + L Sbjct: 244 LTRDMFLFSVFTGLAYRDVCNLTPKHIVRADDGVLWIRTTRQKTGTPCDIPLLGLPKQII 303 Query: 242 MKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATIS-A 298 K + GK ++ + + K AT +++ H R AT Sbjct: 304 EKYKGVAKDGKLLPMLSCGR-------LNKNLKVIATICKIDRKLIYHAGRHTYATEICL 356 Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347 G + G + + + Y K + ++ +R S ++ Sbjct: 357 SQGVPIESVSRMLGHRDLRSTQIYAKITEHK--IAEDMQRAESRIEDKF 403 >gi|237727000|ref|ZP_04557481.1| integrase [Bacteroides sp. D4] gi|229433856|gb|EEO43933.1| integrase [Bacteroides dorei 5_1_36/D4] Length = 406 Score = 94.7 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 48/284 (16%), Positives = 96/284 (33%), Gaps = 39/284 (13%) Query: 78 YRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT---TKHIRSGVESRKHTPSSA 133 + KSA +++ + + + D++ +T + + + + ++ Sbjct: 111 FAKSAIDNSDKKQSTKDNLHTTLAVLHDFRSGLDFKDLTYTFLRDFEQYLREKGNAVNTI 170 Query: 134 IQFLTSMRVLFKWAVRQEYVAIN--PCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191 + + +R L A+ Q Y+ + P + K++ +++++ ++ E Sbjct: 171 AKHMRQLRTLVNEAINQGYMHADAYPFRKYK-IKQEKGRHEFLIPDELKKLETVEVEEES 229 Query: 192 PR---LAFEFLLYSGLRCSDSCRAGVQHLQN----NIFSIKTQKTGTIITVELP-----D 239 R AF F Y+GLR SD C+ ++ K+ KTG I + L Sbjct: 230 MRHVLDAFLFCCYTGLRYSDFCQLTPENFIRINGKRWLYFKSVKTGVEIRLPLHLLFESR 289 Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATIS 297 L IG ++ + + A G+ K H R AT+ Sbjct: 290 ALGSLDRYPDIGSLAALP-------CNSEVNRQLRKLAGLCGIKKRITYHVSRHTCATLL 342 Query: 298 ADAGATAHELMATYGWKTVDQAETYT-----------KGADRIR 330 G + G +V + Y+ K A R R Sbjct: 343 IHQGVAITTVQKLLGHTSVKTTQIYSEILSSTIVRDLKNAQRKR 386 >gi|212692014|ref|ZP_03300142.1| hypothetical protein BACDOR_01509 [Bacteroides dorei DSM 17855] gi|212665406|gb|EEB25978.1| hypothetical protein BACDOR_01509 [Bacteroides dorei DSM 17855] Length = 387 Score = 94.7 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 43/285 (15%), Positives = 89/285 (31%), Gaps = 33/285 (11%) Query: 76 SEYRKSAHWGSLAVNSRISFESYFDQIIRK--------SGDFDYRKITTK---------- 117 +Y+ A + R + + G + +I Sbjct: 103 DKYKLKADFLEY---YRKQLRKHDQKWEFVYLHFSNFVHGKCTFEEIDIDLCNKFREYLL 159 Query: 118 HIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177 + + + T +SA + ++ R K R + N +E+ + + + E Sbjct: 160 SAKKLRRNGRITRNSASGYWSTFRGFLKILYRNGMIKTNVNDFLEKIETEDTMKEALSVE 219 Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL-----QNNIFSIKTQKTGTI 232 ++ Q + ++A F + LR SD + + I TQK T Sbjct: 220 ELYQLAETPCKKPIVKIASLFSCMTSLRISDILALCWEDIVDYSAGGKCVHIITQKNKTE 279 Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVR 290 + + + + L+ + K F + + + K AG+ K + H R Sbjct: 280 DIIPISEEALGLIGYSSEKKGLVF-----KGLMRSWTQAPMKEWIRSAGITKNITFHSYR 334 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335 + T+ AG + + K++ Y K D + N Sbjct: 335 RTFTTLQGAAGTDVRTIQSIMAHKSITTTMRYMKVVDSNKREASN 379 >gi|186896553|ref|YP_001873665.1| integrase family protein [Yersinia pseudotuberculosis PB1/+] gi|186699579|gb|ACC90208.1| integrase family protein [Yersinia pseudotuberculosis PB1/+] Length = 327 Score = 94.7 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 48/307 (15%), Positives = 96/307 (31%), Gaps = 24/307 (7%) Query: 26 RKGHGRRIRLPYPHESTFIP-AYMSALTGSTPKREYINSP--RKKPTTLKWLISEYRKSA 82 R R+ A+ + + ++E+++ P ++ + L L Y Sbjct: 16 RPAGRNGKRIRRTFSKKHEAVAFEKYVVVNYHEKEWLSKPTDKRSLSELSTLWWSY--HG 73 Query: 83 HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRV 142 ++ +I+ F K R+ + SS + L + Sbjct: 74 QNMDYGQKYKVQLAKVI-RIMSDLCAFQIDKNVIARYRAIRLAGGVKASSVNRDLAVLSG 132 Query: 143 LFKWAVRQE-YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY 201 +F + Y + +P + + K K ++ ++++ + G R+A L Sbjct: 133 MFTALINAGVYHSEHPLAGISKLKPKQTARAFLSQSEIKELLNCLD-GDNRRVAI-LCLS 190 Query: 202 SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIG----KETFFI 257 +G R ++ + +H+ +N + K G TV + L G + I Sbjct: 191 TGARWGEAIKLRTEHIIDNRITFVATKNGKQRTVPISRDVFNDLTAMKSGLLFNDAAYLI 250 Query: 258 NNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVD 317 K K T ++ H +R AT G L G T+ Sbjct: 251 FRQKLKSVKTDLPQ-----------GQATHVLRHTFATHFMINGGNIITLQRILGHSTIQ 299 Query: 318 QAETYTK 324 Q Y Sbjct: 300 QTMLYAH 306 >gi|150008058|ref|YP_001302801.1| integrase [Parabacteroides distasonis ATCC 8503] gi|149936482|gb|ABR43179.1| integrase [Parabacteroides distasonis ATCC 8503] Length = 311 Score = 94.7 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 48/284 (16%), Positives = 104/284 (36%), Gaps = 36/284 (12%) Query: 90 NSRISFESYFDQIIRKSG--DFDYRKITTKH---IRSGVESRKHTPSSAIQFLTSMRVLF 144 ++ S++ + G Y I +S + + + ++ ++ +R ++ Sbjct: 25 STAKSYQDALNSFKCFCGMEAIPYAYINRNRLLCYQSWLLDKGRSLNTVSTYMRRIRHIY 84 Query: 145 KWAVRQEYVAINP------CLSVERPKRKTEGIRPWTKEDMQQ-FKSFWSEGSQPRLAFE 197 AV P VE ++K +E +++ F + + S R+ Sbjct: 85 NLAVEANEAPFVPNLFKDVFTGVESKRKK-----ALPREMLERMFNAPLGDPSLRRVQLT 139 Query: 198 FLL---YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL----AMTPI 250 L +SG+ D +++++ I QK+G++I +E+P G ++LL A T Sbjct: 140 VRLMFAFSGIAFVDLTHLKWENIRDGILQYHRQKSGSLIQLEIPSGALRLLDELSACTAK 199 Query: 251 GKETFFINNDKQK----------MNATQFSIWFKAKATKAG--VNKSAHGVRKFSATISA 298 F ++ ++F+ K A G + +++ +R A+ Sbjct: 200 ESFYLFPFLSGRRTGEAAYKEYNRTLSRFNRDLKLLARSTGVTLPVTSYTIRHSFASFLK 259 Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342 + + + G K++ + Y K RL N SV Sbjct: 260 EQDVSIEVISELLGHKSIKTTQIYLKSFSLERLSTVNRNCFESV 303 >gi|218707888|ref|YP_002415407.1| Integrase/recombinase (E2 protein) [Escherichia coli UMN026] gi|293404547|ref|ZP_06648540.1| integron integrase IntI1 [Escherichia coli FVEC1412] gi|218434985|emb|CAR15926.1| Integrase/recombinase (E2 protein) [Escherichia coli UMN026] gi|291428259|gb|EFF01285.1| integron integrase IntI1 [Escherichia coli FVEC1412] Length = 337 Score = 94.7 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 42/306 (13%), Positives = 93/306 (30%), Gaps = 62/306 (20%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHT 129 ++ + R+ + ++ + ++ + IR G + + + + + RK + Sbjct: 16 VLDQLRERIRYLHYSLRTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75 Query: 130 PSSAIQFLTSMRVLFK--WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 S+ Q L ++ + ++ + RP+ T +++ + F Sbjct: 76 VSTHRQALAALLFFYGKVLCTDLPWLQ-----EIGRPRPSRRLPVVLTPDEVVRILGFL- 129 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQKTGTIITVELPDGFMKLL 245 EG RL + L +G+R S+ + V+ + ++ K + LP+ L Sbjct: 130 EGEH-RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSL 188 Query: 246 AMTPIGKETFFINN---------------------------------------------D 260 +++ + Sbjct: 189 REQLSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWLWFWVFAQHTHSTDPRSGVVR 248 Query: 261 KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318 + M F FK +AG+ K + H +R AT +G + G V Sbjct: 249 RHHMYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVST 308 Query: 319 AETYTK 324 YT Sbjct: 309 TMIYTH 314 >gi|26990625|ref|NP_746050.1| phage integrase, putative [Pseudomonas putida KT2440] gi|24985610|gb|AAN69514.1|AE016585_6 phage integrase, putative [Pseudomonas putida KT2440] Length = 349 Score = 94.7 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 51/294 (17%), Positives = 93/294 (31%), Gaps = 30/294 (10%) Query: 2 TPSLRLPPFVTKER--TRHGKII--YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPK 57 T + LPP + + + +GK+ Y+R G+ I L + + L + Sbjct: 6 TENRDLPPGMYRRKRQKANGKVWEALYYRDRSGKDIFLGNDLVKAKLK--WAELEAKSVP 63 Query: 58 REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK 117 +E TT+K + EY AV ++ Q+ IT Sbjct: 64 KEL--------TTMKGIFDEYLL-KIVPGKAVRTQKDNIYELKQLRNVFDSAPIDAITPA 114 Query: 118 HIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAI-NPCLSVERPKRKTEGIRPWTK 176 I +SR + A + + + +F A NPCL V + K K + Sbjct: 115 MIAQYRDSRSAK-TRANREIALLSHVFNTAREWGLTTRDNPCLGVRKNKEKPRDFYA-NE 172 Query: 177 EDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236 Q + A + +G R SD ++ + KTG + + Sbjct: 173 TVWQAVYEEAPPELKD--AMDLAYLTGQRPSDVLSMRKDDMEGIYLLVSQGKTGKRLRIV 230 Query: 237 L--------PDGFMKLLAMTPIGKET--FFINNDKQKMNATQFSIWFKAKATKA 280 L ++ + G + F +N ++M+ + A Sbjct: 231 LEVDGVKNSLGLLLERIMHRTSGHLSPFFIVNEHGKRMSWPMLRNRWADAREDA 284 >gi|145220218|ref|YP_001130927.1| phage integrase family protein [Prosthecochloris vibrioformis DSM 265] gi|145206382|gb|ABP37425.1| phage integrase family protein [Chlorobium phaeovibrioides DSM 265] Length = 325 Score = 94.7 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 43/286 (15%), Positives = 88/286 (30%), Gaps = 41/286 (14%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFD----YRKITTKHIRSGVESRKHTPSSAIQFLTSM 140 G+L+ ++ +++ + Q D + + + R P S + L S+ Sbjct: 31 GNLSEHTVLAYRTDIRQFFSILSPPDDLQLLTAADIRFFMAELIRRGLQPRSIARKLASV 90 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKED-MQQFKSFWSEG---------- 189 R F + + + + ++ P+ + + + + F++ Sbjct: 91 RSFFHYLQERGLLGHSVLQTLSMPRYQRSVPAFLSVSETRELFETVVPAARYRKGEAGLL 150 Query: 190 -----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244 + A E L GLR S+ L+ +K G + +P G + Sbjct: 151 DSFVLHRDAAALELLYGCGLRISELTALQDNDLELAGGFVKLTGKGRKQRI-VPLGLAAV 209 Query: 245 LAMTP-----------------IGKETFFINNDKQKMNATQFSIWFKAK--ATKAGVNKS 285 A+ +G F+ N +K+ + K+ Sbjct: 210 SALKKYFEVRRNFFRMKRGTELVGNGYVFLTNKGKKIYPMLVQRMTRKYLLPVTEQKKKN 269 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 H +R AT ++GA + G + E YT RL Sbjct: 270 PHILRHSFATHLLNSGADLQSVSEMLGHSNLSTTEIYTH-VSFERL 314 >gi|327399861|ref|YP_004346892.1| site-specific recombinase, phage integrase family protein [Lactobacillus amylovorus GRL 1112] gi|327399877|ref|YP_004346908.1| site-specific recombinase, phage integrase family protein [Lactobacillus amylovorus GRL 1112] gi|327182531|gb|AEA32966.1| site-specific recombinase, phage integrase family protein [Lactobacillus amylovorus GRL 1112] gi|327182547|gb|AEA32982.1| site-specific recombinase, phage integrase family protein [Lactobacillus amylovorus GRL 1112] Length = 284 Score = 94.7 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 45/269 (16%), Positives = 92/269 (34%), Gaps = 22/269 (8%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGVESRKH--- 128 LI E+ + A + + +E + + ++ + +E + Sbjct: 9 LIDEFIEDLRLQGRAEGTLLEYEMRLKEFAEFFQLKALALDQVKKSDLTEFMEQKLSNCL 68 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK-RKTEGIRPWTKEDMQQFKSFWS 187 S+ L++ RV WAV + Y++ + PK + IR + E++ FK + Sbjct: 69 KVSTIRGKLSTFRVFCLWAVNKNYLSEVIISPQDYPKNTNVKRIRRLSDENLTIFKHYID 128 Query: 188 -EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI----FSIKTQKTGTIITVELPDGFM 242 R AF L+ SG R +++ + + I+ K G+ + + D Sbjct: 129 TLQPNARAAFYLLIGSGCRVAEAANLRAEDVTLRGNSVYIDIRNAKWGSDRNIPIVDADA 188 Query: 243 -----KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATIS 297 K + F +++ + A G+N H +R A + Sbjct: 189 AKIVWKYRTEVEVDNRPLF------RLSKRTLQNYATNFAKSTGINFYCHLLRHTFAGLL 242 Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGA 326 + G + G K++ Y + A Sbjct: 243 TEKGVPLTTVQYLLGHKSLGMTAHYAQSA 271 >gi|294491667|gb|ADE90423.1| integrase/recombinase, phage integrase family [Escherichia coli IHE3034] gi|323161587|gb|EFZ47473.1| integrase [Escherichia coli E128010] Length = 334 Score = 94.7 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 55/311 (17%), Positives = 108/311 (34%), Gaps = 14/311 (4%) Query: 19 GKIIYYFRKGHGRRIRLPYPHESTFIP-AYMSALTGSTPKREYINSPRKKPTTLKWLISE 77 G+ + R + R+ + + A + + KREYI R + TL L+ Sbjct: 9 GRYLLDIRPNGRKGKRVRKVFDKKSVAVATERYIMANAEKREYIQGYRDR-RTLNDLLEL 67 Query: 78 Y-RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQF 136 + A R + +++ D K+ RS + PSSA ++ Sbjct: 68 WWMYHGQHRRKAEEDRKQLRNIINELGADMQAVDLDKLKIIAWRSQKIAEGLKPSSANRY 127 Query: 137 LTSMRVLFKWAVRQE-YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA 195 + + +F + + A +P + + +++++ EG R+A Sbjct: 128 MNRLSGMFTVLKKIGLWDAEHPVRGISILYVSPREMAFLSQKEVALLLDTL-EGDYWRVA 186 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETF 255 L +G R S++C+ + + +N + K G TV + + + G + Sbjct: 187 L-LCLSTGARWSEACKLRGEQIVHNRVTFLETKNGRKRTVPISQAVCEAIKTRETG--SL 243 Query: 256 FINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKT 315 F ++ F + K ++AH +R A+ G L G T Sbjct: 244 FEVKYRE------FCLALKRVKPDLPKGQAAHVLRHTFASHFVMNGGNIIALQKILGHAT 297 Query: 316 VDQAETYTKGA 326 + Q Y A Sbjct: 298 IQQTMAYAHFA 308 >gi|301026700|ref|ZP_07190109.1| site-specific recombinase, phage integrase family [Escherichia coli MS 69-1] gi|300395347|gb|EFJ78885.1| site-specific recombinase, phage integrase family [Escherichia coli MS 69-1] Length = 431 Score = 94.7 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 45/317 (14%), Positives = 97/317 (30%), Gaps = 64/317 (20%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK-ITTKHIRSGVESR-- 126 T+K L ++ +A S ++ + I+ G+ + I + + + Sbjct: 85 TIKELAEKFLALKE-TEVAKTSLNTYRAVIKNILSIIGEKNLASSINKEKLLEVRKELLT 143 Query: 127 --------------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172 + + ++T++ +F++ V Y+A NP + K Sbjct: 144 GYQIPKSNYIVTQPGRSAVTVNNYMTNLNAVFQFGVDNGYLADNPFKGISPLKESRTIPD 203 Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIK----- 225 P ++E+ + Q + + +Y+G+R + C G + + N I+ Sbjct: 204 PLSREEFIRLIDAC-RNQQAKNLWCVSVYTGVRPGELCALGWEDIDLKNGTMMIRRNLAK 262 Query: 226 --------TQKTGTIITV--ELPDGFMKLLAMTPIGKETFF------------------- 256 T +I + D + +T + KE Sbjct: 263 DRFTVPKTQAGTNRVIHLIKPAIDALRSQMTLTRLSKEHIIDVHLREYGRTEKQKCTFVF 322 Query: 257 -------INNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELM 308 + N + A +AG+ ++ ++ R A S AGA + Sbjct: 323 QPEVSARVKNYGDHFTVDSIRQMWDAAIKRAGLRHRKSYQSRHTYACWSLTAGANPAFIA 382 Query: 309 ATYGWKTVDQA-ETYTK 324 G + Y K Sbjct: 383 NQMGHADAQMVFQVYGK 399 >gi|254526258|ref|ZP_05138310.1| site-specific recombinase, phage integrase family [Prochlorococcus marinus str. MIT 9202] gi|221537682|gb|EEE40135.1| site-specific recombinase, phage integrase family [Prochlorococcus marinus str. MIT 9202] Length = 321 Score = 94.7 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 52/310 (16%), Positives = 95/310 (30%), Gaps = 25/310 (8%) Query: 31 RRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLA-V 89 RR P TF+ ++ + + P TL I+EY + Sbjct: 16 RRKNYVGPRSKTFLSRDLAQSWADAVEERSKKVFKDIPITLGEAINEYINGPLLMHRSAE 75 Query: 90 NSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPSSAIQFLTSMRVLFKWA 147 N + + GD + + +H + R K P++ ++ L +RVL W Sbjct: 76 NEKYPLRVTAESW---LGDIPLKDLQIRHFAVWRDERLLKVKPNTVMRELRILRVLIDWV 132 Query: 148 VRQE--YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS-QPRLAFE-FLLYSG 203 + + NP + +T +D Q+ S+ S + L L +G Sbjct: 133 RDERGAEIKDNPARQLRVRGTGDARAPFFTDQDEQRLLFELSQMSNKNHLRLTKLALTTG 192 Query: 204 LRCSDSCRAGVQHLQNN-IFSIKTQKT-------GTIITVELPDGFMKLLAMTPIGKETF 255 R S+ +++ +K V L K+L Sbjct: 193 FRRSELLSLTWRNIDLKKRIIYIHRKNCAATDNSSAPRLVPLQGKAKKILEELSERHGKI 252 Query: 256 FINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWK 314 + F KAG+ H +R + + +G A E+ A G + Sbjct: 253 IDLTKGAARHG------FDKARQKAGLKTLRFHDLRHIAISRMWSSGMNALEISACSGHR 306 Query: 315 TVDQAETYTK 324 + Y+ Sbjct: 307 DIKMLMRYSH 316 >gi|115525989|ref|YP_782900.1| phage integrase family protein [Rhodopseudomonas palustris BisA53] gi|115519936|gb|ABJ07920.1| phage integrase family protein [Rhodopseudomonas palustris BisA53] Length = 409 Score = 94.7 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 58/338 (17%), Positives = 105/338 (31%), Gaps = 41/338 (12%) Query: 15 RTRHGKIIY--YFRKGHGRRIRLPYPHESTFIPAYMS---------ALTGSTPKREYINS 63 R + G +Y +R +R PH S + P G P + + Sbjct: 32 RRQRGAPVYVVKYRAFGRQRFFTIGPHGSPWTPERARKEAKRLLGLVADGKDPADQRTQA 91 Query: 64 PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123 + TL+ + +Y K A + E Y + I +H+ + V Sbjct: 92 ALEAADTLRKITDQYLKHAK-QKQRPKTYSEVERYLITSWKPLHPVSVFLIRRRHVATRV 150 Query: 124 ESRK--HTPSSAIQFLTSMRVLFKWAVRQEY-VAINPCLSVERPKRKTEGIRPWTKEDMQ 180 H +A + ++ +F WA+R+ + NP + RP R T ++ Sbjct: 151 AEMASDHGAVTAARARAALSAMFNWAIREGLDIPSNPVIGTNRPTEPKSRERVLTDIELG 210 Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI----KTQKTGTIITVE 236 Q + + R + L+ + R + L ++ K V Sbjct: 211 QIWAALGDDDYGR-IVKLLILTAQRREEVGGMRWTELDHDTNVWTLPSTRTKNHREHRVP 269 Query: 237 LPDGFMKLLAMTPIGKETFF-INNDKQKMNATQFSIWFKAKATKAG-------------- 281 L + + L+ +E F ++ FS W K+K Sbjct: 270 LTEAAIALIPTPQTSREHVFGAGPRRKGDCHRGFSGWSKSKCVLDAHLFAARRETVEGST 329 Query: 282 -----VNKSAHGVRKFSATISADA-GATAHELMATYGW 313 + H +R+ +AT AD G H + A Sbjct: 330 ETKPIPDWRLHDLRRTAATTMADRLGVLPHIIEAVLNH 367 >gi|323484510|ref|ZP_08089875.1| phage integrase family Site-specific recombinase [Clostridium symbiosum WAL-14163] gi|323402088|gb|EGA94421.1| phage integrase family Site-specific recombinase [Clostridium symbiosum WAL-14163] Length = 280 Score = 94.7 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 38/281 (13%), Positives = 94/281 (33%), Gaps = 29/281 (10%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133 L EY + + N+ + + + + K + + + +S Sbjct: 13 LFGEYLEQDE---KSKNTIEKYRRDLRKFVEYIDGEEVTKELVIGFKEYLVEH-YAVNSV 68 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193 + S+ ++A + V++ K++ + P ++++ + + F + R Sbjct: 69 NSIIASLNRFMQFA---GWQEF----RVKQLKKQRQVYCP-EEKELTKQEYFELIRTAKR 120 Query: 194 -------LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE--LPDGFMKL 244 L + + +G+R S+ VQ ++N + + + + + L M Sbjct: 121 EGKEKIGLIIQTIGSTGIRISELPSITVQAVKNGVAQVDCKGKNRQVLLPRKLLVKLMHY 180 Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISADAG 301 + I FI ++ + K AGVN+ H +R A Sbjct: 181 IRKEHIQCGPIFITKQGNPLDRSNIWKEMKKICRLAGVNEKKVFPHNLRHLFAYSFYQME 240 Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342 +L G ++ Y + G+++ ++I + Sbjct: 241 KDIAKLADLLGHSNINTTRIYIVSS-----GVEHRKQIEKM 276 >gi|323169866|gb|EFZ55522.1| phage integrase family protein [Escherichia coli LT-68] Length = 431 Score = 94.7 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 45/317 (14%), Positives = 97/317 (30%), Gaps = 64/317 (20%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK-ITTKHIRSGVESR-- 126 T+K L ++ +A S ++ + I+ G+ + I + + + Sbjct: 85 TIKELAEKFLALKE-TEVAKTSLNTYRAVIKNILSIIGEKNLASSINKEKLLEVRKELLT 143 Query: 127 --------------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172 + + ++T++ +F++ V Y+A NP + K Sbjct: 144 GYQIPKSNYIVTQPGRSAVTVNNYMTNLNAVFQFGVDNGYLADNPFKGISPLKESRTIPD 203 Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIK----- 225 P ++E+ + Q + + +Y+G+R + C G + + N I+ Sbjct: 204 PLSREEFIRLIDAC-RNQQAKNLWCVSVYTGVRPGELCALGWEDIDLKNGTMMIRRNLAK 262 Query: 226 --------TQKTGTIITV--ELPDGFMKLLAMTPIGKETFF------------------- 256 T +I + D + +T + KE Sbjct: 263 DRFTVPKTQAGTNRVIHLIKPAIDALRSQMTLTRLSKEHIIDVHLREYGRTEKQKCTFVF 322 Query: 257 -------INNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELM 308 + N + A +AG+ ++ ++ R A S AGA + Sbjct: 323 QPEVSARVKNYGDHFTVDSIRQMWDAAIKRAGLRHRKSYQSRHTYACWSLTAGANPAFIA 382 Query: 309 ATYGWKTVDQA-ETYTK 324 G + Y K Sbjct: 383 NQMGHADAQMVFQVYGK 399 >gi|218295372|ref|ZP_03496185.1| integrase family protein [Thermus aquaticus Y51MC23] gi|218244004|gb|EED10530.1| integrase family protein [Thermus aquaticus Y51MC23] Length = 313 Score = 94.7 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 45/270 (16%), Positives = 86/270 (31%), Gaps = 19/270 (7%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLF 144 + + R + +R+ + + P FL ++R + Sbjct: 42 RGYSPRGVRRYLQDLALWFRFLEARAL-PPGPEAVRAILLEERWAPRRVQGFLAALRSYY 100 Query: 145 KW-AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEF---LL 200 ++ A + +P + RPK E++ +F ++ + RL L Sbjct: 101 RYLAQVRGEAVADPTEGIGRPKAGRRLPLHPAPEELLRFLEALAQEKEARLLTALARFLY 160 Query: 201 YSGLRCSDSCRAGVQHLQNNIFS----IKTQKTGTIITVELPDGFMKLLAMT--PIGKET 254 +GLR S++ +++ K V L L P G Sbjct: 161 GTGLRISEALSLKGKNIVQEGGRPVAVRVVGKGNKERLVPLSRTAQSALLELGPPQGNVN 220 Query: 255 FFINN----DKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHEL 307 F + +A F+ A +AG++ + H +R AT + G + Sbjct: 221 VFTFAQGRYRGRVPSARYVEAKFREAALRAGLDPRRFTPHKLRHAYATFLVERGVQLDAV 280 Query: 308 MATYGWKTVDQAETYTKGADRIRLGIKNSR 337 G +++ + Y A R RL SR Sbjct: 281 KDLLGHESIATTQIYLH-ASRERLKEAASR 309 >gi|120435029|ref|YP_860715.1| phage integrase family protein [Gramella forsetii KT0803] gi|117577179|emb|CAL65648.1| phage integrase family protein [Gramella forsetii KT0803] Length = 412 Score = 94.7 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 49/271 (18%), Positives = 92/271 (33%), Gaps = 32/271 (11%) Query: 85 GSLAVNSRISFE---SYFDQIIRKS---GDFDYRKITTKHIRSGVESRKHTP----SSAI 134 A + + + +++ D + + K I K T +SAI Sbjct: 135 KDFATGTAERYRTCKKHVAAFVKQKYNKNDIPVQDVDHKFITGLEYYLKTTRKCAHNSAI 194 Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQ 191 +++T+ + + + A +++ +P L + K K T+E++Q+ Q Sbjct: 195 KYITNFKKIIRIAHANDWIDKDPFLHWK-GKLKIVEREFLTEEEIQKIIDLHLKMERLDQ 253 Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHL-----QNNIFSIKTQKTGTIITVELPDGFMKLLA 246 R F F ++GL +D + + K KT T + + ++ Sbjct: 254 VRDIFIFCCFTGLAYADVKKLNRGDISVGADGEEWVKTKRSKTDTRSNIPILPIAKTIIE 313 Query: 247 MTPI-----GKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSAT-ISA 298 K+ QKMNA + K A AG+ N + H R AT ++ Sbjct: 314 KYKDNELLKEKDLVLPVLSNQKMNA-----YIKEIANLAGISKNLTFHLARHTFATTVTL 368 Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRI 329 G + G + + Y K D Sbjct: 369 TNGVPIESVSKMLGHTNLKTTQHYAKILDMK 399 >gi|218711152|ref|YP_002418772.1| putative Shufflon-specific DNA recombinase [Escherichia coli ED1a] gi|218349935|emb|CAQ87344.1| putative Shufflon-specific DNA recombinase [Escherichia coli ED1a] Length = 397 Score = 94.7 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 47/282 (16%), Positives = 96/282 (34%), Gaps = 19/282 (6%) Query: 57 KREYINSPRKKPTTLKWLISEYRKSAHWGS---LAVNSRIS---FESYFDQIIRKSGDFD 110 K + + + +L + +Y K+ L R++ D+ + + D Sbjct: 21 KADMFQKNKTRKMSLSRALDKYLKTVSVHKKGHLQEFYRVNVIKRHPMADRYMDEITTID 80 Query: 111 YRKITTKHIRSG--VESRKHTPSSAIQFLTSMRVLFKWA-VRQEYVAINPCLSVERPKRK 167 + + R+ T ++ L + LF A V +NP V +PK Sbjct: 81 IAGYRDQRLAQINPRTGRQITGNTVRLELALLSSLFNIARVEWGTCRMNPVELVRKPKIS 140 Query: 168 TEGIRPWTKEDMQQF-KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSI 224 R T + ++ + F + Q + F L + +R + +HL + + Sbjct: 141 NGRDRRLTSGEERRISRYFRDKNQQLYVIFHLALETAMRQGEILTLRWEHLDLQHGVAHL 200 Query: 225 KTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-N 283 K G V L L + P IN + ++ F ++ + N Sbjct: 201 PETKNGLPRDVPLSRKARNYLQILPQQ-----INGNVFSYTSSGFKSAWRTALLDLKIEN 255 Query: 284 KSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTK 324 H +R + + + G E+ A G ++++ + YT Sbjct: 256 LHFHDLRHEAISRFFELGTLNVIEVAAISGHRSLNMLKRYTH 297 >gi|229491429|ref|ZP_04385253.1| site-specific tyrosine recombinase XerC [Rhodococcus erythropolis SK121] gi|229321714|gb|EEN87511.1| site-specific tyrosine recombinase XerC [Rhodococcus erythropolis SK121] Length = 308 Score = 94.7 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 39/293 (13%), Positives = 94/293 (32%), Gaps = 30/293 (10%) Query: 68 PTTLKWLISEYRKSAHW-GSLAVNSRISF----ESYFDQIIRKSGDFDYRKITTKHIRSG 122 P +L + Y + + ++ ++ + S + D ++ +RS Sbjct: 6 PASLSVHLDAYAEHLRLSRGRSEHTIRAYVGDARALLTHFSAGSENADLDRLDLSVMRSW 65 Query: 123 VESRKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK--- 176 + ++ ++ + +S R W + ++++P + P + + Sbjct: 66 LAAQNAVGTARTTVARRASSARGFTAWLAQTGRISVDPGTRLAAPPARRTLPTVLRQSQA 125 Query: 177 -EDMQQFKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTG 230 + M +S + RL E L +G+R + C V+ + + ++ K Sbjct: 126 LDAMDAAESGAQQQEPLALRDRLIVELLYSTGIRVGELCGLDVESVDADRRLLRVLGKGN 185 Query: 231 TIITVELPDGFMKLLA----------MTPIGKETFFINNDKQKMNATQFSIWFKA--KAT 278 +V L + + +++ Q A Sbjct: 186 KERSVPYGLPAESALNGWLEHGRPALCSDRSGRALLLGVRGGRLDQRQARSVVHETMAAI 245 Query: 279 KAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIR 330 + HG+R +AT + GA + G ++ + YT +R+R Sbjct: 246 PGAPDMGPHGLRHSAATHLLEGGADLRVVQELLGHASLATTQLYTHVSVERLR 298 >gi|260587709|ref|ZP_05853622.1| integrase/recombinase, phage integrase family [Blautia hansenii DSM 20583] gi|331084000|ref|ZP_08333107.1| hypothetical protein HMPREF0992_02031 [Lachnospiraceae bacterium 6_1_63FAA] gi|260541974|gb|EEX22543.1| integrase/recombinase, phage integrase family [Blautia hansenii DSM 20583] gi|330402362|gb|EGG81932.1| hypothetical protein HMPREF0992_02031 [Lachnospiraceae bacterium 6_1_63FAA] Length = 355 Score = 94.7 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 43/318 (13%), Positives = 100/318 (31%), Gaps = 59/318 (18%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF---------------DYRKITTKH 118 + +Y ++ + + +R+S+ R + D + Sbjct: 29 YVKDYFRAKE-PTTSDKTRLSYAYDLRVFFRFLQETNPSLKEKSLSEISIQDLSLLEPVD 87 Query: 119 IRSGVESRKHTPSSAIQF-----------LTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167 E K S+ + ++ +R + + +++ + NP V+ PK K Sbjct: 88 FEEFQEYLKAYQSADNKLETNSRTGIARKMSCLRSFYDYLCKRQLLTSNPVRLVDMPKIK 147 Query: 168 TEGIRPWTKEDMQ----------------QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCR 211 + I +++ + + + + LL +G+R S+ Sbjct: 148 EKAIIQLDPDEVANLLDYIENYGKQLSGVKLYHYNKQKYRDIAIVTLLLGTGVRVSELVG 207 Query: 212 AGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLA---------MTPIGK--ETFFIN 258 + + NN I +K G + V + L +TP+ + F++ Sbjct: 208 LNIGDIDFKNNGIRI-LRKGGNEMIVYFGAEVEQALKDYLEISRNSITPLSGHEDALFLS 266 Query: 259 NDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVD 317 +++++ K A+ V + H +R T + + G V+ Sbjct: 267 GQRKRISVDAVEKMVKKYASAVSVKTITPHKLRSTYGTALYRETGDIYLVADVLGHSDVN 326 Query: 318 QA-ETYTKGADRIRLGIK 334 + Y K +D R Sbjct: 327 TTKKHYAKLSDERRRSAS 344 >gi|150395893|ref|YP_001326360.1| phage integrase family protein [Sinorhizobium medicae WSM419] gi|150027408|gb|ABR59525.1| phage integrase family protein [Sinorhizobium medicae WSM419] Length = 343 Score = 94.7 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 46/267 (17%), Positives = 87/267 (32%), Gaps = 14/267 (5%) Query: 67 KPTTLKWLISEYRKSAHWGSLAVNSR-ISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125 K TTL L+ Y W +F D+I+ + + I + Sbjct: 70 KETTLAELLQRY-ADILWDEGKHKYNVKAFIGELDEILLGKRFSTFSQEMLDGIVGALRK 128 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 R ++ ++ + + ++ L + A + + P +R K K +R ++ + Sbjct: 129 RGNSNATINRKMAALGKLLRKAYKMGDIHNLP--EFKRQKEKAGRLRFLEADEEEVLFRE 186 Query: 186 WSEGSQPRLAFEFLLY-SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244 + S+ L L +G R ++ + + K+G TV L Sbjct: 187 IASRSELYLYLSIFLVDTGARLGEAIDLKWNDIHEGRATFWVTKSGRSRTVPLTLRAKDA 246 Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV----NKSAHGVRKFSATISADA 300 L F D+QK F + A AG+ + H +R A+ Sbjct: 247 LKKVADRSPGPFSRIDQQK-----FRAIWNAAKVDAGLGDEEDIVPHILRHTCASRLVRG 301 Query: 301 GATAHELMATYGWKTVDQAETYTKGAD 327 G + G +T++ Y A Sbjct: 302 GIDLRRVQMWLGHQTLEMTMRYAHLAS 328 >gi|329955504|ref|ZP_08296412.1| site-specific recombinase, phage integrase family [Bacteroides clarus YIT 12056] gi|328525907|gb|EGF52931.1| site-specific recombinase, phage integrase family [Bacteroides clarus YIT 12056] Length = 333 Score = 94.7 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 38/214 (17%), Positives = 82/214 (38%), Gaps = 14/214 (6%) Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 + +SA + ++ R L K A +++ + N +++ + K + T ++++ + + Sbjct: 122 SRNSAAGYFSTFRALLKIAYQEKMLRENLNDFIDKIEWKEVKKQYLTLAEVKKLAATPCK 181 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-----IFSIKTQKTGTIITVELPDGFMK 243 + A F +GLR SD + +++ I T+KT T T+ + + ++ Sbjct: 182 IPVLKQASLFSCMTGLRISDILQLTWDNIEVGPDNGYYIRICTEKTETEATLPISNEALE 241 Query: 244 LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAG 301 L P F + + + K ++AG+ K + H R A I G Sbjct: 242 -LCGIPGSGRVF------KGLTRAMTNQPLKQWISEAGIKKHITFHCFRHSYAVIQISLG 294 Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335 + + K V + Y + + N Sbjct: 295 TDIYTVSKMLTHKNVSTTQIYADLVNSKKRETAN 328 >gi|227461184|gb|ACP39539.1| putative integron integrase [uncultured microorganism] Length = 317 Score = 94.7 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 42/306 (13%), Positives = 93/306 (30%), Gaps = 62/306 (20%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHT 129 ++ + R+ + ++ + ++ + IR G + + + + + RK + Sbjct: 16 VLDQLRERIRYLHYSLRTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75 Query: 130 PSSAIQFLTSMRVLFK--WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 S+ Q L ++ + ++ + RP+ T +++ + F Sbjct: 76 VSTHRQALAALLFFYGKVLCTDLPWLQ-----EIGRPRPSRRLPVVLTPDEVVRILGFL- 129 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQKTGTIITVELPDGFMKLL 245 EG RL + L +G+R S+ + V+ + ++ K + LP+ L Sbjct: 130 EGEH-RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSL 188 Query: 246 AMTPIGKETFFINN---------------------------------------------D 260 +++ + Sbjct: 189 REQLSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVR 248 Query: 261 KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318 + M F FK +AG+ K + H +R AT +G + G V Sbjct: 249 RHHMYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVST 308 Query: 319 AETYTK 324 YT Sbjct: 309 TMIYTH 314 >gi|218699855|ref|YP_002407484.1| putative defective integrase; Qin prophage [Escherichia coli IAI39] gi|256022761|ref|ZP_05436626.1| putative defective integrase; Qin prophage [Escherichia sp. 4_1_40B] gi|300939773|ref|ZP_07154414.1| site-specific recombinase, phage integrase family [Escherichia coli MS 21-1] gi|301647740|ref|ZP_07247532.1| site-specific recombinase, phage integrase family [Escherichia coli MS 146-1] gi|331642162|ref|ZP_08343297.1| putative lambdoid prophage Qin defective integrase [Escherichia coli H736] gi|218369841|emb|CAR17612.1| putative defective integrase; Qin prophage [Escherichia coli IAI39] gi|300455386|gb|EFK18879.1| site-specific recombinase, phage integrase family [Escherichia coli MS 21-1] gi|301074110|gb|EFK88916.1| site-specific recombinase, phage integrase family [Escherichia coli MS 146-1] gi|315619033|gb|EFU99615.1| phage integrase family protein [Escherichia coli 3431] gi|331038960|gb|EGI11180.1| putative lambdoid prophage Qin defective integrase [Escherichia coli H736] Length = 431 Score = 94.7 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 45/317 (14%), Positives = 97/317 (30%), Gaps = 64/317 (20%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK-ITTKHIRSGVESR-- 126 T+K L ++ +A S ++ + I+ G+ + I + + + Sbjct: 85 TIKELAEKFLALKE-TEVAKTSLNTYRAVIKNILSIIGEKNLASSINKEKLLEVRKELLT 143 Query: 127 --------------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172 + + ++T++ +F++ V Y+A NP + K Sbjct: 144 GYQIPKSNYIVTQPGRSAVTVNNYMTNLNAVFQFGVDNGYLADNPFKGISPLKESRTIPD 203 Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIK----- 225 P ++E+ + Q + + +Y+G+R + C G + + N I+ Sbjct: 204 PLSREEFIRLIDAC-RNQQAKNLWCVSVYTGVRPGELCALGWEDIDLKNGTMMIRRNLAK 262 Query: 226 --------TQKTGTIITV--ELPDGFMKLLAMTPIGKETFF------------------- 256 T +I + D + +T + KE Sbjct: 263 DRFTVPKTQAGTNRVIHLIKPAIDALRSQMTLTRLSKEHIIDVHLREYGRTEKQKCTFVF 322 Query: 257 -------INNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELM 308 + N + A +AG+ ++ ++ R A S AGA + Sbjct: 323 QPEVSARVKNYGDHFTVDSIRQMWDAAIKRAGLRHRKSYQSRHTYACWSLTAGANPAFIA 382 Query: 309 ATYGWKTVDQA-ETYTK 324 G + Y K Sbjct: 383 NQMGHADAQMVFQVYGK 399 >gi|171315564|ref|ZP_02904800.1| integrase family protein [Burkholderia ambifaria MEX-5] gi|171099401|gb|EDT44139.1| integrase family protein [Burkholderia ambifaria MEX-5] Length = 343 Score = 94.7 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 46/305 (15%), Positives = 93/305 (30%), Gaps = 17/305 (5%) Query: 28 GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYR-KSAHWGS 86 G+RIR AY + L + + R+ +L+ L+ + + S Sbjct: 19 RGGKRIR-KSFRTHAEAKAYENWLRVKAAENPDWSPVRRDSRSLRELVQLWYDRHGRELS 77 Query: 87 LAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKW 146 +R + ++ + D + R+ + S+ + ++R +F Sbjct: 78 SGAGTRDRLFAACVEMGEPTVD-SFSADVFASYRARRLEAGISASNMNREHATLRAVFNE 136 Query: 147 AVRQEYVAI-NPCLSVERPKRKTEGIRPWTKEDMQQFKS--FWSEGSQPRLAFEFLLYSG 203 R NP + + K + + E +++ S L L +G Sbjct: 137 LSRLGLWERENPLGKLRQFKVQERELSFLDDESIRELLRELRASRNPGAELIAVVCLSTG 196 Query: 204 LRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQK 263 R S++ ++N K+ V + D + + Sbjct: 197 ARWSEAETLTRSQVRNGQIQFARTKSRRNRAVPIDDRLQHRVLAHADEHG------RGVR 250 Query: 264 MNATQFSIWFKAKATKAGVNKSA----HGVRKFSATISADAGATAHELMATYGWKTVDQA 319 + +T FS F+ +AG+ A H +R A+ G L G + Sbjct: 251 IFSTAFSA-FREAVERAGLELPAGQLTHVLRHTFASHFMMNGGNILTLQRILGHANLTMT 309 Query: 320 ETYTK 324 Y Sbjct: 310 MRYAH 314 >gi|160894098|ref|ZP_02074876.1| hypothetical protein CLOL250_01652 [Clostridium sp. L2-50] gi|156864131|gb|EDO57562.1| hypothetical protein CLOL250_01652 [Clostridium sp. L2-50] Length = 405 Score = 94.7 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 51/272 (18%), Positives = 86/272 (31%), Gaps = 23/272 (8%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESRKH 128 T+ + Y + SL S + + ++ D IT I + Sbjct: 57 TMGEFVEVYFRDKS-QSLKDRSIKNKRDTMNAQLLPYFKDRPMNSITPAEIIQWQNTIIE 115 Query: 129 TPSSAIQFLTS---MRVLFKWAVRQEYVAINPCLSVER-PKRKTEGIRPWTKEDMQQFKS 184 S T M LF A +A NPC V+R K + ++ WT E+ +QF + Sbjct: 116 KGYSDDYLKTIQNQMTALFNHAKNIYNLADNPCDKVKRMGKTSKKKMKFWTIEEYRQFMT 175 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-----GTII------ 233 GS+ + FE L ++G R ++ + + KT G + Sbjct: 176 GIEPGSKYYVLFELLFWTGAREGEALSITPADIDFERNLLHINKTYYRMHGEDVITSPKT 235 Query: 234 -----TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAH 287 T+ +P+ K + + M K K GV K H Sbjct: 236 EESNRTISIPEFLKKEIQDYISRLYELPEDERIFPMVHEAVQHKLKQVVQKTGVKKIRVH 295 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQA 319 +R A + G + +G + Sbjct: 296 DIRHSHAAFLINKGVPPLMIKERFGHTDIRIT 327 >gi|42563728|gb|AAS20532.1| Int1 [Pseudomonas aeruginosa] Length = 337 Score = 94.7 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 42/306 (13%), Positives = 93/306 (30%), Gaps = 62/306 (20%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHT 129 ++ + R+ + ++ + ++ + IR G + + + + + RK + Sbjct: 16 VLDQLRERIRYLHYSLRTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75 Query: 130 PSSAIQFLTSMRVLFK--WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 S+ Q L ++ + ++ + RP+ T +++ + F Sbjct: 76 VSTHRQALAALLFFYGKVLCTDLPWLQ-----EIGRPRPSRRLPVVLTPDEVVRILGFL- 129 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQKTGTIITVELPDGFMKLL 245 EG RL + L +G+R S+ + V+ + ++ K + LP+ L Sbjct: 130 EGEH-RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSL 188 Query: 246 AMTPIGKETFFINN---------------------------------------------D 260 +++ + Sbjct: 189 REQLSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVR 248 Query: 261 KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318 + M F FK +AG+ K + H +R AT +G + G V Sbjct: 249 RHHMYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVST 308 Query: 319 AETYTK 324 YT Sbjct: 309 TMIYTH 314 >gi|9507567|ref|NP_052898.1| integrase [Plasmid R100] gi|17530624|ref|NP_511222.1| integrase [IncN plasmid R46] gi|18466564|ref|NP_569372.1| putative integrase [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|31795140|ref|NP_857998.1| DNA integrase [uncultured bacterium] gi|51492558|ref|YP_067855.1| integrase/recombinase [Aeromonas punctata] gi|55275332|ref|YP_133854.1| DNA integrase [uncultured bacterium] gi|58000325|ref|YP_190211.1| integrase [Escherichia coli] gi|60115569|ref|YP_209361.1| integrase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|66968565|ref|YP_245442.1| IntI1 DNA integrase [Pseudomonas aeruginosa] gi|77993248|ref|YP_358838.1| integrase [IncP-1beta multiresistance plasmid pB8] gi|111038080|ref|YP_709167.1| IntI1 integrase [IncP-1 plasmid pKJK5] gi|133756458|ref|YP_001096414.1| Tn21 integrase [Escherichia coli] gi|134044876|ref|YP_001102252.1| integrase IntI1 for transposon Tn21 [Yersinia pestis biovar Orientalis str. IP275] gi|145301311|ref|YP_001144151.1| integrase/recombinase [Aeromonas salmonicida subsp. salmonicida A449] gi|156144910|ref|YP_001427371.1| integrase [Pseudomonas aeruginosa] gi|160431700|ref|YP_001552088.1| integrase [Salmonella enterica subsp. enterica serovar Dublin] gi|165938049|ref|ZP_02226609.1| integrase/recombinase (E2 protein) [Yersinia pestis biovar Orientalis str. IP275] gi|170650836|ref|YP_001740003.1| integrase/recombinase [Escherichia coli SMS-3-5] gi|187736864|ref|YP_001816602.1| IntI1 [Escherichia coli 1520] gi|190410293|ref|YP_001965796.1| intI1 [Klebsiella pneumoniae] gi|190570443|ref|YP_001966865.1| integrase [Aeromonas hydrophila] gi|190576895|ref|YP_001966227.1| IntI1 integrase [Klebsiella pneumoniae] gi|194430536|ref|ZP_03063005.1| integrase/recombinase [Escherichia coli B171] gi|194439843|ref|ZP_03071908.1| integrase/recombinase [Escherichia coli 101-1] gi|194733854|ref|YP_002112947.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|209901149|ref|YP_002286930.1| integrase/recombinase [Klebsiella pneumoniae] gi|215528097|ref|YP_002332850.1| integrase [Klebsiella pneumoniae] gi|226807711|ref|YP_002791406.1| IntI1 [Enterobacter cloacae] gi|226807858|ref|YP_002791507.1| IntI1 integrase [Enterobacter cloacae] gi|226810024|ref|YP_002791719.1| IntI1 [Enterobacter cloacae] gi|226810139|ref|YP_002791835.1| IntI1 integrase [Enterobacter cloacae] gi|256367791|ref|YP_003108348.1| integrase/recombinase [Escherichia coli] gi|284000137|ref|YP_003377824.1| integrase IntL [Escherichia coli O26:H-] gi|297622240|ref|YP_003675796.1| IntI1 [Klebsiella oxytoca KOX105] gi|300819973|ref|ZP_07100154.1| integron integrase [Escherichia coli MS 107-1] gi|300906153|ref|ZP_07123870.1| integron integrase [Escherichia coli MS 84-1] gi|300955292|ref|ZP_07167681.1| integron integrase [Escherichia coli MS 175-1] gi|301302513|ref|ZP_07208643.1| integron integrase [Escherichia coli MS 124-1] gi|301329501|ref|ZP_07222300.1| integron integrase [Escherichia coli MS 78-1] gi|305696852|ref|YP_003864166.1| integrase [Salmonella enterica subsp. enterica serovar Typhimurium] gi|310286416|ref|YP_003937677.1| integrase/recombinase [Escherichia coli] gi|313107841|ref|ZP_07794014.1| integrase/recombinase (E2 protein) [Pseudomonas aeruginosa 39016] gi|330011345|ref|ZP_08307041.1| integron integrase [Klebsiella sp. MS 92-3] gi|331680833|ref|ZP_08381473.1| integrase/recombinase (E2 protein) [Escherichia coli H299] gi|50402171|sp|P62590|INT2_ECOLX RecName: Full=Integrase/recombinase; AltName: Full=E2 protein gi|50402172|sp|P62591|INT2_PSEAE RecName: Full=Integrase/recombinase; AltName: Full=E2 protein gi|50402173|sp|P62592|INT2_SALTI RecName: Full=Integrase/recombinase; AltName: Full=E2 protein gi|2120150|pir||I39499 integrase - Acinetobacter baumannii gi|6752460|gb|AAF27722.1|AF156486_1 integrase INTI1 [Klebsiella pneumoniae] gi|7381448|gb|AAF61482.1|AF191564_1 integrase [Pseudomonas aeruginosa] gi|13940487|gb|AAK50385.1|AF313472_1 IntI1 integrase [Pseudomonas aeruginosa] gi|15384483|gb|AAK96393.1|AF313471_1 IntI1 integrase [Pseudomonas aeruginosa] gi|18958400|gb|AAL82587.1|AF355189_1 integrase IntI1 [Pseudomonas aeruginosa] gi|48206|emb|CAA31361.1| unnamed protein product [Escherichia coli] gi|151300|gb|AAA25857.1| integrase [Pseudomonas aeruginosa] gi|151817|gb|AAB59081.1| IntI1 integrase [Plasmid R46] gi|530814|gb|AAC44315.1| DNA integrase [Pseudomonas aeruginosa] gi|596251|gb|AAA56784.1| integrase [Acinetobacter baumannii] gi|3088617|gb|AAC14727.1| DNA integrase [Plasmid NR79] gi|3513661|gb|AAC33911.1| IntI1 DNA integrase [Escherichia coli] gi|5103166|dbj|BAA78802.1| integrase for In2 [Plasmid R100] gi|16357506|gb|AAK60185.2| integrase IntI1 [Escherichia coli] gi|16505880|emb|CAD09758.1| putative integrase [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|17342661|gb|AAL13418.1| integrase [IncN plasmid R46] gi|21898667|gb|AAM77079.1| integrase [uncultured bacterium] gi|29329827|emb|CAD57181.1| integrase [Aeromonas salmonicida] gi|30349168|gb|AAP20904.1| integrase [Escherichia coli] gi|30349183|gb|AAP20918.1| integrase [Escherichia coli] gi|30350250|gb|AAP22972.1| IntI1 [Escherichia coli] gi|31746384|emb|CAD97509.1| DNA integrase [uncultured bacterium] gi|33086394|emb|CAD80250.1| integrase class1 [Pseudomonas aeruginosa] gi|34556020|emb|CAD57194.1| integrase [Aeromonas salmonicida] gi|40645553|dbj|BAD06398.1| DNA integrase [Klebsiella pneumoniae] gi|42391698|dbj|BAD08688.1| DNA integrase [Klebsiella pneumoniae] gi|42543943|dbj|BAD11025.1| DNA integrase [Klebsiella pneumoniae] gi|45502089|emb|CAF31510.1| IntI1 DNA integrase [Salmonella enterica] gi|45758127|gb|AAS76339.1| integrase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|45925935|gb|AAS79108.1| integrase [Shigella flexneri 2a] gi|45934117|gb|AAS79142.1| integrase [Pseudomonas aeruginosa] gi|46559086|emb|CAE52510.2| DNA integrase [Pseudomonas aeruginosa] gi|47716827|gb|AAT37602.1| integrase [Escherichia coli] gi|48526060|gb|AAT45232.1| integrase [Salmonella enterica subsp. enterica serovar Choleraesuis] gi|51470601|emb|CAG15092.1| integrase/recombinase [Aeromonas caviae] gi|54300645|gb|AAV32837.1| integrase [Pseudomonas aeruginosa] gi|54887450|emb|CAG34228.1| IntI1 integrase [Salmonella enterica subsp. enterica serovar Typhimurium] gi|54887458|emb|CAG34236.1| IntI1 integrase [Salmonella enterica subsp. enterica serovar Typhimurium] gi|54969638|emb|CAG27804.1| DNA integrase [uncultured bacterium] gi|66259843|gb|AAY43107.1| integrase [Enterobacter cloacae] gi|66862647|emb|CAI46945.1| IntI1 DNA integrase [Pseudomonas aeruginosa] gi|71361872|gb|AAZ30042.1| Integrase [Enterobacter cloacae] gi|72416446|emb|CAF31402.2| type I integrase [Pseudomonas aeruginosa] gi|77734001|emb|CAI10765.1| integrase [IncP-1beta multiresistance plasmid pB8] gi|81072647|gb|ABB55351.1| IntI1 integrase [Enterobacter cloacae] gi|87295510|gb|ABD37051.1| IntI1 [Escherichia coli] gi|88702681|gb|ABD49194.1| integrase [Achromobacter xylosoxidans] gi|88911246|gb|ABD58919.1| IntI1 [Pseudomonas aeruginosa] gi|89033269|gb|ABD59947.1| Tn21 integrase [Escherichia coli] gi|89211896|gb|ABD63310.1| IntI1 [Bordetella bronchiseptica] gi|89243390|gb|ABD64875.1| integrase [Aeromonas hydrophila] gi|89330180|emb|CAJ84004.1| integrase [Salmonella enterica subsp. enterica serovar Keurmassar] gi|92112119|gb|ABE73722.1| integrase [Acidovorax sp. MUL2G8] gi|92112131|gb|ABE73754.1| integrase [Burkholderiales bacterium MUL2G11] gi|110264479|gb|ABG56842.1| IntI1 integrase [Klebsiella pneumoniae] gi|110781085|emb|CAK02669.1| IntI1 integrase [IncP-1 plasmid pKJK5] gi|112553509|gb|ABI20478.1| integrase [uncultured bacterium] gi|114147178|gb|ABI50465.1| integrase [Klebsiella pneumoniae] gi|114147192|gb|ABI50478.1| IntI1 [Klebsiella pneumoniae] gi|116294895|gb|ABJ98410.1| IntI1 [Shigella flexneri 5] gi|118402696|emb|CAI94353.1| type I integrase [Pseudomonas aeruginosa] gi|118402704|emb|CAI94360.1| type I integrase [Pseudomonas aeruginosa] gi|118402713|emb|CAI94368.1| type I integrase [Pseudomonas aeruginosa] gi|118402722|emb|CAI94376.1| type I integrase [Pseudomonas aeruginosa] gi|119116290|emb|CAH10848.2| integrase-recombinase [Pseudomonas aeruginosa] gi|133905410|gb|ABO42172.1| integrase IntI1 for transposon Tn21 [Yersinia pestis biovar Orientalis str. IP275] gi|142856088|gb|ABO92403.1| integrase/recombinase [Aeromonas salmonicida subsp. salmonicida A449] gi|145848971|emb|CAM91521.1| integrase intiI [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|146151087|gb|ABQ02853.1| intI1 [Klebsiella pneumoniae] gi|148455768|gb|ABQ65126.1| IntI1 [Pseudomonas aeruginosa] gi|156104633|emb|CAO91764.1| integrase [Pseudomonas aeruginosa] gi|159885569|dbj|BAF93171.1| integrase [Salmonella enterica subsp. enterica serovar Dublin] gi|165914072|gb|EDR32689.1| integrase/recombinase (E2 protein) [Yersinia pestis biovar Orientalis str. IP275] gi|165928622|gb|ABY74390.1| integrase [Klebsiella pneumoniae] gi|170293866|gb|ACB13001.1| IntI1 [Hydrogenophaga sp. PL2G6] gi|170522112|gb|ACB20289.1| integrase/recombinase [Escherichia coli SMS-3-5] gi|170785722|gb|ACB37786.1| IntI1 [Klebsiella pneumoniae] gi|172051446|emb|CAP07788.1| IntI1 [Escherichia coli] gi|182382566|gb|ACB87555.1| DNA integrase [Pseudomonas aeruginosa] gi|190683007|gb|ACE81789.1| IntI1 [Enterobacter cloacae] gi|192822646|gb|ACF06155.1| class 1 integrase [Klebsiella pneumoniae] gi|193409924|gb|ACF17979.1| IntI1 [Escherichia coli] gi|194326135|emb|CAQ64786.1| intergrase [Cloning vector pRG930cm] gi|194359398|gb|AAK59383.2| DNA integrase [Pseudomonas aeruginosa] gi|194411419|gb|EDX27772.1| integrase/recombinase [Escherichia coli B171] gi|194421233|gb|EDX37255.1| integrase/recombinase [Escherichia coli 101-1] gi|194709356|gb|ACF88579.1| integrase/recombinase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197359178|gb|ACH69795.1| class I integrase [Pseudomonas aeruginosa] gi|207581351|gb|ACI24747.1| integrase [Salmonella enterica subsp. enterica serovar Newport] gi|208436691|gb|ACI28900.1| IntI1 [Pseudomonas aeruginosa] gi|209574100|gb|ACI62988.1| integrase/recombinase [Klebsiella pneumoniae] gi|225730198|gb|ACO24910.1| integrase [Enterobacter aerogenes] gi|225730210|gb|ACO24921.1| integrase [Escherichia coli] gi|226425937|gb|ACO54030.1| IntI1 [Enterobacter cloacae] gi|226426085|gb|ACO54178.1| IntI1 integrase [Enterobacter cloacae] gi|226426251|gb|ACO54343.1| IntI1 [Enterobacter cloacae] gi|226426366|gb|ACO54458.1| IntI1 integrase [Enterobacter cloacae] gi|227809552|gb|ACP40994.1| DNA integrase intI1 [Shigella flexneri] gi|228480728|gb|ACQ42055.1| integrase/recombinase [Escherichia coli] gi|238773820|dbj|BAH66385.1| integrase [Pseudomonas aeruginosa] gi|247712942|gb|ACT09123.1| IntI1 [Pseudomonas aeruginosa] gi|253559511|gb|ACT32445.1| class I integrase [Xanthomonas oryzae pv. oryzae] gi|253559513|gb|ACT32446.1| class I integrase [Xanthomonas oryzae pv. oryzae] gi|254914163|gb|ACT83767.1| integrase IntI1 [Escherichia coli] gi|257043820|gb|ACV33237.1| DNA integrase [Enterobacter cloacae] gi|257043842|gb|ACV33257.1| DNA integrase [Pseudomonas aeruginosa] gi|257043850|gb|ACV33264.1| DNA integrase [Pseudomonas aeruginosa] gi|257123763|gb|ACV41753.1| IntI1 [Pseudomonas aeruginosa] gi|260677486|gb|ACX47970.1| integrase [Pseudomonas aeruginosa] gi|267850619|gb|ACY82390.1| integrase [Salmonella enterica subsp. enterica serovar Typhimurium] gi|281323234|gb|ADA60225.1| integrase/recombinase [Klebsiella oxytoca] gi|281600419|gb|ADA73403.1| Integrase/recombinase [Shigella flexneri 2002017] gi|283445077|gb|ADB20421.1| integrase IntI1 [Escherichia coli O26:H-] gi|284923819|emb|CBG36917.1| integrase [Escherichia coli 042] gi|289064109|gb|ADC80448.1| class 1 integron integrase IntI1 [Pseudomonas alcaligenes] gi|289064116|gb|ADC80454.1| class 1 integron integrase IntI1 [Pseudomonas oryzihabitans] gi|289064135|gb|ADC80472.1| class 1 integron integrase IntI1 [Comamonas testosteroni] gi|289065278|gb|ADC80781.1| IntI1 [Escherichia coli] gi|289065352|gb|ADC80852.1| IntI1 [Escherichia coli] gi|289551904|gb|ADD10607.1| IntI1 [Pseudomonas putida] gi|290964843|emb|CBH41111.1| class 1 integrase [Kluyvera georgiana] gi|295981465|emb|CBL87884.1| IntI1 integrase [Pseudomonas sp. Tik3] gi|296492059|gb|ADH29561.1| DNA integrase IntI1 [Klebsiella oxytoca KOX105] gi|299483209|gb|ADJ19347.1| IntI1 [Enterobacter cloacae] gi|300317797|gb|EFJ67581.1| integron integrase [Escherichia coli MS 175-1] gi|300402043|gb|EFJ85581.1| integron integrase [Escherichia coli MS 84-1] gi|300527473|gb|EFK48535.1| integron integrase [Escherichia coli MS 107-1] gi|300842038|gb|EFK69798.1| integron integrase [Escherichia coli MS 124-1] gi|300844364|gb|EFK72124.1| integron integrase [Escherichia coli MS 78-1] gi|302127772|emb|CBO78185.1| class 1 integrase [Salmonella enterica subsp. enterica serovar Enteritidis] gi|304376153|dbj|BAJ15315.1| integrase [Salmonella enterica subsp. enterica serovar Typhimurium] gi|308826745|emb|CBX36000.1| Integrase/recombinase [Escherichia coli] gi|310880516|gb|EFQ39110.1| integrase/recombinase (E2 protein) [Pseudomonas aeruginosa 39016] gi|312261322|gb|ADQ54342.1| integrase [Klebsiella pneumoniae] gi|315252947|gb|EFU32915.1| integron integrase [Escherichia coli MS 85-1] gi|315667013|gb|ADU55733.1| intI1 [Pseudomonas sp. 11BF10] gi|317109804|gb|ADU90743.1| Integrase/recombinase [uncultured bacterium] gi|321271381|gb|ADW79471.1| class 1 integron integrase IntI1 [Escherichia coli] gi|323903319|gb|ADY11083.1| IntI1 DNA integrase [Escherichia coli] gi|323959138|gb|EGB54804.1| integron integrase [Escherichia coli H489] gi|324020458|gb|EGB89677.1| integron integrase [Escherichia coli MS 117-3] gi|324110986|gb|EGC04975.1| integron integrase [Escherichia fergusonii B253] gi|325491815|gb|ADZ16819.1| class 1 integrase [Pseudomonas fluorescens] gi|325495829|gb|EGC93689.1| integrase [Escherichia fergusonii ECD227] gi|327536588|gb|AEA95421.1| integron integrase IntI1 [Salmonella enterica subsp. enterica serovar Dublin] gi|327536704|gb|AEA95536.1| integron integrase IntI1 [Salmonella enterica subsp. enterica serovar Dublin] gi|328534216|gb|EGF60841.1| integron integrase [Klebsiella sp. MS 92-3] gi|331081821|gb|EGI52979.1| integrase/recombinase (E2 protein) [Escherichia coli H299] Length = 337 Score = 94.7 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 42/306 (13%), Positives = 93/306 (30%), Gaps = 62/306 (20%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHT 129 ++ + R+ + ++ + ++ + IR G + + + + + RK + Sbjct: 16 VLDQLRERIRYLHYSLRTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75 Query: 130 PSSAIQFLTSMRVLFK--WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 S+ Q L ++ + ++ + RP+ T +++ + F Sbjct: 76 VSTHRQALAALLFFYGKVLCTDLPWLQ-----EIGRPRPSRRLPVVLTPDEVVRILGFL- 129 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQKTGTIITVELPDGFMKLL 245 EG RL + L +G+R S+ + V+ + ++ K + LP+ L Sbjct: 130 EGEH-RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSL 188 Query: 246 AMTPIGKETFFINN---------------------------------------------D 260 +++ + Sbjct: 189 REQLSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVR 248 Query: 261 KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318 + M F FK +AG+ K + H +R AT +G + G V Sbjct: 249 RHHMYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVST 308 Query: 319 AETYTK 324 YT Sbjct: 309 TMIYTH 314 >gi|327470621|gb|EGF16077.1| phage integrase family integrase/recombinase [Streptococcus sanguinis SK330] Length = 328 Score = 94.3 bits (233), Expect = 2e-17, Method: Composition-based stats. Identities = 36/279 (12%), Positives = 87/279 (31%), Gaps = 15/279 (5%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES----RKHT 129 L+ + + + S ++ + + R +TT +R+ + RK + Sbjct: 53 LLELFISAKRIEGCSEKSLKYYKMVIENMFVSL-KTSIRDLTTSDLRTYLARYQQERKSS 111 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 + F W ++Y+ +P + + K + E ++ + + Sbjct: 112 KVTIDNMRRIFSSFFGWLEDEDYILKSPVRRIHKIKTDKTIKETLSDEGLELLRDACDK- 170 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG-----FMKL 244 + + L +G+R + R + + G + D + Sbjct: 171 IRDLAMIDLLTSTGMRVGELVRLNREDINFYERECVVFGKGNSERIVYFDARTKIHLINY 230 Query: 245 LAMTPIGKETFF--INNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAG 301 L F +++ ++ + KA +NK H R+ AT + D G Sbjct: 231 LDSRQDDNPALFVSLSSPHDRLLIGGVETRLRQLGQKADLNKVHPHKFRRTLATRAIDKG 290 Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340 ++ G +D Y ++ + + + I Sbjct: 291 MPIEQVQHLLGHVKIDTTMHYA-MVNQANVKNSHRKYIG 328 >gi|291515473|emb|CBK64683.1| Site-specific recombinase XerD [Alistipes shahii WAL 8301] Length = 355 Score = 94.3 bits (233), Expect = 2e-17, Method: Composition-based stats. Identities = 42/232 (18%), Positives = 83/232 (35%), Gaps = 12/232 (5%) Query: 111 YRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG 170 +R+ + R + +SA+ + ++ R K R + + N +E+ + + Sbjct: 121 FREYLLNAKQLRRPERPISRNSAVGYWSTFRGFLKILYRNKLIHSNVNDFLEKIEPEDVV 180 Query: 171 IRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL-----QNNIFSIK 225 + E++ + + + A F + LR SD + + Sbjct: 181 KDYLSVEELYRLAEMPCKIPILKTASLFSCLTSLRISDILTLRWEEIVDFAAGGKCVYTV 240 Query: 226 TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284 TQKT T + + D ++L+ +P F K+ K AG+ K Sbjct: 241 TQKTKTEDIIPISDEALQLIGYSPEKTGLVF-KGLKRCWTQYP----MKEWIRTAGITKN 295 Query: 285 -SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKN 335 + H R+ AT+ A AG + + K++ + Y K D + N Sbjct: 296 ITFHSYRRTFATLQAAAGTDIRTIQSIMAHKSITTTQRYMKVVDSNKRKASN 347 >gi|191165897|ref|ZP_03027734.1| site-specific recombinase, phage integrase family [Escherichia coli B7A] gi|190904028|gb|EDV63740.1| site-specific recombinase, phage integrase family [Escherichia coli B7A] Length = 426 Score = 94.3 bits (233), Expect = 2e-17, Method: Composition-based stats. Identities = 45/317 (14%), Positives = 97/317 (30%), Gaps = 64/317 (20%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK-ITTKHIRSGVESR-- 126 T+K L ++ +A S ++ + I+ G+ + I + + + Sbjct: 80 TIKELAEKFLALKE-TEVAKTSLNTYRAVIKNILSIIGEKNLASSINKEKLLEVRKELLT 138 Query: 127 --------------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172 + + ++T++ +F++ V Y+A NP + K Sbjct: 139 GYQIPKSNYIVTQPGRSAVTVNNYMTNLNAVFQFGVDNGYLADNPFKGISPLKESRTIPD 198 Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIK----- 225 P ++E+ + Q + + +Y+G+R + C G + + N I+ Sbjct: 199 PLSREEFIRLIDAC-RNQQAKNLWCVSVYTGVRPGELCALGWEDIDLKNGTMMIRRNLAK 257 Query: 226 --------TQKTGTIITV--ELPDGFMKLLAMTPIGKETFF------------------- 256 T +I + D + +T + KE Sbjct: 258 DRFTVPKTQAGTNRVIHLIKPAIDALRSQMTLTRLSKEHIIDVHLREYGRTEKHKCTFVF 317 Query: 257 -------INNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELM 308 + N + A +AG+ ++ ++ R A S AGA + Sbjct: 318 QPEVSARVKNYGDHFTVDSIRQMWDAAIKRAGLRHRKSYQSRHTYACWSLTAGANPAFIA 377 Query: 309 ATYGWKTVDQA-ETYTK 324 G + Y K Sbjct: 378 NQMGHADAQMVFQVYGK 394 >gi|8118290|gb|AAF72980.1|AF255921_1 recombinase [Shigella flexneri] gi|152063|gb|AAA91585.1| recombinase [Plasmid RGN238] Length = 337 Score = 94.3 bits (233), Expect = 2e-17, Method: Composition-based stats. Identities = 42/306 (13%), Positives = 93/306 (30%), Gaps = 62/306 (20%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHT 129 ++ + R+ + ++ + ++ + IR G + + + + + RK + Sbjct: 16 VLDQLRERIRYLHYSLRTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75 Query: 130 PSSAIQFLTSMRVLFK--WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 S+ Q L ++ + ++ + RP+ T +++ + F Sbjct: 76 VSTHRQALAALLFFYGKVLCTDLPWLQ-----EIGRPRPSRRLPVVLTPDEVVRILGFL- 129 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQKTGTIITVELPDGFMKLL 245 EG RL + L +G+R S+ + V+ + ++ K + LP+ L Sbjct: 130 EGEH-RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSL 188 Query: 246 AMTPIGKETFFINN---------------------------------------------D 260 +++ + Sbjct: 189 REQLSRARAWWLKDQAQGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVR 248 Query: 261 KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318 + M F FK +AG+ K + H +R AT +G + G V Sbjct: 249 RHHMYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVST 308 Query: 319 AETYTK 324 YT Sbjct: 309 TMIYTH 314 >gi|260844019|ref|YP_003221797.1| putative integrase [Escherichia coli O103:H2 str. 12009] gi|257759166|dbj|BAI30663.1| putative integrase [Escherichia coli O103:H2 str. 12009] Length = 312 Score = 94.3 bits (233), Expect = 2e-17, Method: Composition-based stats. Identities = 49/301 (16%), Positives = 98/301 (32%), Gaps = 12/301 (3%) Query: 28 GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRK-SAHWGS 86 G+RIR + +S + L NS ++P ++ LI + K Sbjct: 6 RKGKRIRKKFKTKSDAVLYERWVLAQQHNNEWKGNSIDRRPLSV--LIDLWWKYHGQLMK 63 Query: 87 LAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKW 146 N+R+ + + + T+ +R + PS+ + + ++ +F Sbjct: 64 SGHNTRLKLLRLSEAMDDPCVHKLNTTMLTE-LRVSRIEQGIQPSTINREIGALSAMFTA 122 Query: 147 AVRQEY-VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLR 205 + + + NP ++ K + +K + Q +E RLA E LL +G R Sbjct: 123 LISSGHFLNDNPVQGLKGMKVNEREMGYLSKSECVQLLDALAENPDERLAVEILLSTGAR 182 Query: 206 CSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMN 265 + + + + + K TV + + + + G + F D Sbjct: 183 WGEVAALEQRRVLHCRITFSKTKNSKNRTVPITESLFE--KIKKRGGKLVFPTLD----- 235 Query: 266 ATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 + K A ++ H +R A+ G L G + Y Sbjct: 236 YSLVRDVIKTVAPDVPDGQAVHALRHTFASHFMMNGGNILTLQKILGHAKIQTTMIYAHL 295 Query: 326 A 326 A Sbjct: 296 A 296 >gi|229020983|ref|ZP_04177670.1| Prophage LambdaBa04, site-specific recombinase, phage integrase [Bacillus cereus AH1273] gi|229023655|ref|ZP_04180148.1| Prophage LambdaBa04, site-specific recombinase, phage integrase [Bacillus cereus AH1272] gi|228737691|gb|EEL88194.1| Prophage LambdaBa04, site-specific recombinase, phage integrase [Bacillus cereus AH1272] gi|228740336|gb|EEL90647.1| Prophage LambdaBa04, site-specific recombinase, phage integrase [Bacillus cereus AH1273] Length = 379 Score = 94.3 bits (233), Expect = 2e-17, Method: Composition-based stats. Identities = 49/306 (16%), Positives = 96/306 (31%), Gaps = 48/306 (15%) Query: 84 WGSLAVNSRI-----SFESYFD----QIIRKSGDFDYRKITTKHIRSGVESRKHTP---S 131 WG L + S+E I+ G + I I+S K Sbjct: 69 WGKLKPIRKAELKITSYEKDMSLVKLYILPTFGYKKIKSIKPVIIQSYYAELKEKGLSNG 128 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-GS 190 + R +FK AV E + N V++P+ + ++ W+ ++ +F + E Sbjct: 129 TISNIHRCFRCIFKHAVEWEILHDNIMNKVKKPREEQGEMKTWSSKECNRFLHYLKEKNK 188 Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPI 250 + + F +Y+G+R + + + + I K+ L K + Sbjct: 189 KYYIFFLLAIYTGMRRGELLALTWKDIDFDNKRILVNKSLVKTEEGLFKAATKTKSSNRS 248 Query: 251 GKETFFINNDKQKMN---ATQFSIW----------------------------FKAKATK 279 + F+ + Q +F W K K Sbjct: 249 ISISSFVVTELQSYYAYKKKEFFRWGIHLNEEAYIFAGNTIHSPLHIDAPHRFLKDHYKK 308 Query: 280 AGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSR 337 AGV + H +R AT+ AG + G ++ + Y+ + + + Sbjct: 309 AGVPRIRIHDLRHTHATLMLQAGEHPKIVQDRLGHSSIQMTLDKYSHITQ--NMQQQAAE 366 Query: 338 RISSVV 343 +V+ Sbjct: 367 NFENVI 372 >gi|262202504|ref|YP_003273712.1| integrase family protein [Gordonia bronchialis DSM 43247] gi|262202581|ref|YP_003273789.1| integrase family protein [Gordonia bronchialis DSM 43247] gi|262204533|ref|YP_003275741.1| integrase family protein [Gordonia bronchialis DSM 43247] gi|262085851|gb|ACY21819.1| integrase family protein [Gordonia bronchialis DSM 43247] gi|262085928|gb|ACY21896.1| integrase family protein [Gordonia bronchialis DSM 43247] gi|262087880|gb|ACY23848.1| integrase family protein [Gordonia bronchialis DSM 43247] Length = 324 Score = 94.3 bits (233), Expect = 2e-17, Method: Composition-based stats. Identities = 37/255 (14%), Positives = 76/255 (29%), Gaps = 29/255 (11%) Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPC-------------LSVERPK 165 +R + + + + L+S+ L+++ + V NP V + Sbjct: 68 VRIEDGEQGLSARTIKRRLSSIAGLYEYLRIRGVVTANPVPRGLATRSPGRAVRGVPLIR 127 Query: 166 RKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFS 223 R F + + R +L GLR + G+ L Sbjct: 128 APRTLPRVLDPAQADAFVASLRT-DRDRAMVAAMLLGGLRRCEVLGLGLNDLNPGERRVF 186 Query: 224 IKTQKTGTIITVEL--------PDGFMKLLAMTPIGKETFFINN---DKQKMNATQFSIW 272 I K G V + D + F + Q ++A Sbjct: 187 IAEGKGGHQRIVPISTRFFTAVTDYLNRERPQDTATDRLFVVLKGPRRGQPLSAAGLDEI 246 Query: 273 FKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 +AG+ + H +R T +AG + + G ++++ Y A+ L Sbjct: 247 IAGARRRAGIEQLTCHQLRHTCFTRLREAGMALEAIQSQAGHRSIESTRIYLHLANDW-L 305 Query: 332 GIKNSRRISSVVDSD 346 + R + ++ + Sbjct: 306 ASEYRRAMEAIDAQN 320 >gi|299144869|ref|ZP_07037937.1| integrase/recombinase, phage integrase family [Bacteroides sp. 3_1_23] gi|298515360|gb|EFI39241.1| integrase/recombinase, phage integrase family [Bacteroides sp. 3_1_23] Length = 330 Score = 94.3 bits (233), Expect = 2e-17, Method: Composition-based stats. Identities = 34/282 (12%), Positives = 93/282 (32%), Gaps = 21/282 (7%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHT 129 L+S + + + + + + ++++ ITT IR+ + E + + Sbjct: 55 LLSSFISAKKIEGCSEKTLAYYRNTIERLLLTL-SIAICHITTSDIRAYLSDYQEEHQSS 113 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 + F W ++Y+A +P + + K + + E ++Q + + Sbjct: 114 KVTMDNMRRIFSSFFAWLEDEDYIAKSPVRRIHKVKTDSLVKEVLSDEQLEQLRDSCT-N 172 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT----QKTGTIITVELPDG----F 241 + + L +G+R + + + + F + K V Sbjct: 173 KRDLALIDILSSTGIRVGELVKLNREDID---FHERQCVVFGKGNKERIVYFNARTKLHL 229 Query: 242 MKLLAMTPIGKETFFINND--KQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISA 298 + L F++ ++ + + + + K H R+ AT++ Sbjct: 230 QQYLDERTDDNPALFVSLHLPHTRLTISGVEVRIRDLGKSLSMPKVHPHKFRRTLATMAI 289 Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340 D G ++ G +D Y ++ + + + + + Sbjct: 290 DKGMPIEQVQRLLGHVRIDTTLHYA-IVNQNNVKLAHKKYLG 330 >gi|226363393|ref|YP_002781175.1| integrase [Rhodococcus opacus B4] gi|226241882|dbj|BAH52230.1| putative integrase [Rhodococcus opacus B4] Length = 368 Score = 94.3 bits (233), Expect = 2e-17, Method: Composition-based stats. Identities = 57/320 (17%), Positives = 105/320 (32%), Gaps = 29/320 (9%) Query: 24 YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAH 83 +R + R + +A R P+ T+ + + + Sbjct: 18 RYRTPERKSTRRRGFTSKRQAQDF-AATVEVEKMRGEYVPPKLGHITMGEVGPAWLERKE 76 Query: 84 WGSLAVNSRISFE-SYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI--QFLTSM 140 L ++ S E S+ + + G + + + T + + + + Sbjct: 77 -SDLKPSAYRSLETSWRVHVKPRWGTVRLSDVDLDAVERWIADLNRTKGATVVIRAYGVL 135 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP-WTKEDMQQFKSFWSEGSQPRLAFEFL 199 + AV+ + +A NP VE RK R T +++ E R L Sbjct: 136 AGILDSAVKGKRLARNPARGVENLPRKQRKPRVYLTHDEVAALADSAGE---KRALVLVL 192 Query: 200 LYSGLRCSDSCRAGVQHLQ---------------NNIFSIKTQKTGTIITVELPDGFMKL 244 Y GLR ++ V+HL N + T K+ +V +P ++ Sbjct: 193 AYCGLRWGEAIGLRVRHLDLLRKRATVVENAVQVNMEMHVGTPKSHKSRSVPIPGFVVEE 252 Query: 245 LAMT---PIGKETFFINNDKQKMNAT-QFSIWFKAKATKAGVNK-SAHGVRKFSATISAD 299 LA + F D + + F+ WF K+GV + + H +R A++S Sbjct: 253 LARQCEGKGRDDLVFPGRDGDYLKRSVSFTGWFTKAVEKSGVPRLTPHDLRHTCASLSIA 312 Query: 300 AGATAHELMATYGWKTVDQA 319 AGA L G + Sbjct: 313 AGANVKSLQRMLGHASAAMT 332 >gi|304320755|ref|YP_003854398.1| Phage integrase [Parvularcula bermudensis HTCC2503] gi|303299657|gb|ADM09256.1| Phage integrase [Parvularcula bermudensis HTCC2503] Length = 440 Score = 94.3 bits (233), Expect = 2e-17, Method: Composition-based stats. Identities = 53/351 (15%), Positives = 99/351 (28%), Gaps = 46/351 (13%) Query: 21 IIYYFRKGHGRR--IRLPYPHESTFIPAYMSALTGSTPK---REYINSPRKKPTTLKWLI 75 +I Y +G RR I L G + ++ T++ L Sbjct: 42 LIQYRARGRSRRYSIGLHGVWTPETARREAKIRLGDVAQGDDPAAEREEERRAVTVRELC 101 Query: 76 SEYRKSAHWG---------SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR 126 +Y G A II G + IT + + ++ Sbjct: 102 EQYIADMEAGLVLGKGGRPKKATTVATDVGRIRRHIIPLLGTRRIKDITKPDMNNLMKDI 161 Query: 127 --------------------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR 166 + +AI+ + + +F +A+ + NP +++P+ Sbjct: 162 IAGKTRVVMKTEKLRGKAIVRGGRGTAIRTMGLLGGIFSYAIEAGIIDQNPTHGLKKPRY 221 Query: 167 KTEGIRPWTKEDMQQFKSFWSE-------GSQPRLAFEFLLYSGLRCSDSCRAGVQ--HL 217 + R ++ + + E G + L +G R + + Sbjct: 222 RVRDRR-LSEAEYRTLGHILKEVQDDSHYGIHAEILRLIAL-TGCRRGEIIGLRWSEVDI 279 Query: 218 QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQF-SIWFKAK 276 + + +K K G + L A TF + F W K Sbjct: 280 EGSCLRLKDSKEGASVRPVGLPVIDYLEAARSKRNGTFVFPGQGEDNAVGNFPQSWKKLF 339 Query: 277 ATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 A + + H +R A+I+ D G T + A G Y D Sbjct: 340 ADTPLWDVTPHVLRHSFASIANDLGFTEITIAALIGHAKGSVTSKYVHTLD 390 >gi|323970469|gb|EGB65730.1| phage integrase [Escherichia coli TA007] Length = 374 Score = 94.3 bits (233), Expect = 2e-17, Method: Composition-based stats. Identities = 47/274 (17%), Positives = 94/274 (34%), Gaps = 19/274 (6%) Query: 65 RKKPTTLKWLISEYRKSAHWGS---LAVNSRIS---FESYFDQIIRKSGDFDYRKITTKH 118 + + TL + +Y K+ L R++ D+ + + D + Sbjct: 6 KIRKMTLNRALDKYLKTVSVHKKGHLQEVYRVNVIKRHPVADRYMDEITTVDIASYRDQR 65 Query: 119 IRSG--VESRKHTPSSAIQFLTSMRVLFKWA-VRQEYVAINPCLSVERPKRKTEGIRPWT 175 + R+ T ++ L + LF A V +NP V +PK R T Sbjct: 66 LAQINPRTGRQITGNTVRLELALLSSLFNIARVEWGTCRMNPVELVRKPKISNGRERRLT 125 Query: 176 KEDMQQF-KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQKTGTI 232 + ++ + F + Q + F L + +R + +HL + + K G Sbjct: 126 SGEERRLSRYFRDKNQQLYVIFHLALETAMRQGEILTLRWEHLDLQHGVAHLPETKNGLP 185 Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRK 291 V L L + P IN + ++ F ++ + N H +R Sbjct: 186 RDVPLSRKARNYLQILPQQ-----INGNVFSYTSSGFKSAWRTALLDLKIENLHFHDLRH 240 Query: 292 FSATISADAG-ATAHELMATYGWKTVDQAETYTK 324 + + + G E+ A G ++++ + YT Sbjct: 241 EAISRFFELGTLNVIEVAAISGHRSLNMLKRYTH 274 >gi|194445766|ref|YP_002041997.1| phage integrase [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194404429|gb|ACF64651.1| phage integrase [Salmonella enterica subsp. enterica serovar Newport str. SL254] Length = 336 Score = 94.3 bits (233), Expect = 2e-17, Method: Composition-based stats. Identities = 46/321 (14%), Positives = 94/321 (29%), Gaps = 44/321 (13%) Query: 29 HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLA 88 G+RIR + + + AY + ++ ++ + L LI + W L Sbjct: 21 KGKRIRKKFATKGEAL-AYEKYIASEMEEKPWLGEKQDNRR-LSELIEQ------WHDLY 72 Query: 89 VNSRISFESYFDQ---IIRKSGDFDYRKITTKHIRSGVESR-------------KHTPSS 132 + + + I GD +IT+ E R P + Sbjct: 73 GRTLSDADRMMSKLKGICAGMGDPIAAQITSADFSQYREGRLKGEIPDVNGRLMPIQPQT 132 Query: 133 AIQFLTSMRVLFKWAVRQE-YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191 ++ +F + + NP + K + + E+++ + SE S Sbjct: 133 VNHEQRNLSAVFGTLKKLGHWSLPNPLAGIPTFKVDEKMVSFLYPEEIKSLLQYLSESSS 192 Query: 192 P--RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTP 249 + + L +G R S++ + + K K G + ++ + + Sbjct: 193 DSVLIITKICLATGARWSEAENLEGAQVTPYRITYKNTKNGRVRSIPISKELYDEIPK-- 250 Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGV----NKSAHGVRKFSATISADAGATAH 305 + F+ KAG+ + H +R A+ G Sbjct: 251 ---------KRGRLFTP--CRKTFERVVAKAGIELPDGQCTHVLRHTFASHFMMNGGNIL 299 Query: 306 ELMATYGWKTVDQAETYTKGA 326 L G + Y A Sbjct: 300 VLKEILGHSDIKMTMIYAHFA 320 >gi|126642664|ref|YP_001085648.1| site-specific tyrosine recombinase [Acinetobacter baumannii ATCC 17978] Length = 233 Score = 94.3 bits (233), Expect = 2e-17, Method: Composition-based stats. Identities = 39/211 (18%), Positives = 73/211 (34%), Gaps = 21/211 (9%) Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG----- 189 + LTS+R KWA + +Y+ INP + ++ E + Q Sbjct: 3 RHLTSIRQFMKWAEQGKYLEINPTDDFKLKRQPRPLPGMIDIEMVNQILDQPMPEKPVDQ 62 Query: 190 ---SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-----ELPDGF 241 + + E L SGLR ++ ++ + N ++ G + + + Sbjct: 63 QLWLRDKAMLELLYSSGLRLAELQGLTIKDIDFNRQLVRITGKGNKTRIVPFGKKAKESL 122 Query: 242 MKLLAMTPIGKETF------FINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFS 293 + L + I K F FI+ + Q K +A +AGV + H +R Sbjct: 123 LNWLKIYNIWKGHFDQNASVFISQRGGALTPRQIEKRVKLQAQRAGVNVDLHPHLLRHCF 182 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTK 324 A+ + + G + + YT Sbjct: 183 ASHMLSSSGDLRSVQEMLGHSNLSTTQIYTH 213 >gi|254821280|ref|ZP_05226281.1| phage integrase family protein [Mycobacterium intracellulare ATCC 13950] Length = 378 Score = 94.3 bits (233), Expect = 2e-17, Method: Composition-based stats. Identities = 54/341 (15%), Positives = 109/341 (31%), Gaps = 33/341 (9%) Query: 15 RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT-TLKW 73 R R G+ + + P + + A + + TL+ Sbjct: 24 RERSGRYSAAYIGPDAKLHHAPRTYAAESDAEGWLANERRKIDLGTWGAVERSDGITLRA 83 Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQII-RKSGDFDYRKITTKHIRSGVESR-KHTPS 131 ++ L +R +ES ++I G +T +R P+ Sbjct: 84 YADKWIGQ---RQLRPRTRQHYESMLGRLILPDLGAAKIVTLTPAKVRVWHAELGAEHPT 140 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCL-SVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 + + AV+ E + NPC + + T D+ + Sbjct: 141 RNAHAYALLHAICATAVQDEVLDANPCRIRAAMQTTRKRDVDVLTPADVDRLAGKMPP-- 198 Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ---------------KTGTII-T 234 + R + + GLR ++ + + + +++ + KT + Sbjct: 199 RLRASVILAAWCGLRWGETSELRRKDVSGDCATLRVRRAVTYRKGEFIVGQPKTAAGVRD 258 Query: 235 VELPDGFMKLLA-------MTPIGKETFFINNDKQKMNATQF-SIWFKAKATKAGVNKSA 286 V +P ++ + F ++ + M+ + + W KA+A+ N Sbjct: 259 VAVPPHIRPIIKEHLKNHVNRDLESLLFPVDAEGSHMHGDNYRTHWEKARASIGKPNLRV 318 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 H +R A ++A +GAT ELM G T A Y A+ Sbjct: 319 HDLRHVGAVLAAQSGATTAELMHRLGHTTPQMALRYQHVAE 359 >gi|239904755|ref|YP_002951493.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1] gi|239794618|dbj|BAH73607.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1] Length = 411 Score = 94.3 bits (233), Expect = 2e-17, Method: Composition-based stats. Identities = 50/296 (16%), Positives = 98/296 (33%), Gaps = 31/296 (10%) Query: 63 SPRKKPT---TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS--GDFDYRKITT- 116 SP P+ T L Y S E+ ++ D +T Sbjct: 113 SPAAAPSKGLTFGQLSMMYLDHLRVSGRTEKHIASLENLLKRMFFDILGKDTPVAGMTYL 172 Query: 117 ------KHIRSGVESRKHTPSS---AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK 167 GV + P S ++ + +F + + E ++ +P ++ K + Sbjct: 173 KDIVPFIRQMQGVSQQTGKPRSQASVNRYCDYVDAIFNFGMEMELISKSPMKGRKKAKEQ 232 Query: 168 TEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCS--DSCRAGVQHLQNNIFSIK 225 ++ +D+++ S R A E G R + +H+ + +++ Sbjct: 233 PRDVQI-GIDDLKRIMDHAE--SHIRWAMEVCFNLGTRPGPSELFALRWEHVDFDAGTVR 289 Query: 226 --TQKTGTIITVELPDG-FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV 282 KT T TV + + ++L M + F + + + + + S F KAG+ Sbjct: 290 IYATKTKTFRTVPVTESFLIRLREMRDQSQSGFIVEYEGKPLTTIRRS--FNTACEKAGI 347 Query: 283 --NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE----TYTKGADRIRLG 332 + + +R AT GA + G TV Y +G +G Sbjct: 348 TVDVRMYDLRHLFATTMLANGADLAAVSKLMGHSTVKMTADVYYHYLEGEKEKAVG 403 >gi|297565613|ref|YP_003684585.1| integrase family protein [Meiothermus silvanus DSM 9946] gi|296850062|gb|ADH63077.1| integrase family protein [Meiothermus silvanus DSM 9946] Length = 387 Score = 94.3 bits (233), Expect = 2e-17, Method: Composition-based stats. Identities = 47/332 (14%), Positives = 100/332 (30%), Gaps = 51/332 (15%) Query: 64 PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITT---KHI 119 P TLK + S + + ++ + I GD +++ H+ Sbjct: 56 PDPDRITLKEFCERWLTSVE-HRVKPTTHYGYKVALEKHAIPILGDIAVQRLQPLHLTHL 114 Query: 120 RSGVESRKHTPSSAIQFL-----------TSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168 + + ++ P+ + ++ + AVR + NP V+ P+ Sbjct: 115 YADLLKKRIHPNDPKRLKTLSPTTVRLVHRTLHAALEDAVRWGLLPWNPADRVKPPQAPR 174 Query: 169 EGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKT 226 WT E++ +F + ++ S+ F L +G+R + + ++ Sbjct: 175 YTGEVWTPEEVWRFLAE-AQHSRLYALFFLALMTGMRRGELLGLKWADIDWQEGAIWVRQ 233 Query: 227 --QKTGTIITVELPDGFMKLLAMTPIGKET--------------------------FFIN 258 K G+ V+ P + + F Sbjct: 234 NLTKAGSKRVVQSPKTYRSSRPVDVSSDVLEVLQQHREQQEKDRLGIGDAWTDEGWVFTT 293 Query: 259 NDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVD 317 + + + F A +A V + H +R ++ A AG + G +V Sbjct: 294 SVGTPIEPSNLRREFLAIIKRAKVKEIRFHDLRDTHVSLLALAGVDPKVVSERVGHASVA 353 Query: 318 -QAETYTK--GADRIRLGIKNSRRISSVVDSD 346 +TY A R + + + D Sbjct: 354 FTQQTYQHLFRAQRKKAALAVGELLGPREDRP 385 >gi|320197761|gb|EFW72369.1| putative integrase [Escherichia coli EC4100B] Length = 426 Score = 94.3 bits (233), Expect = 2e-17, Method: Composition-based stats. Identities = 45/317 (14%), Positives = 97/317 (30%), Gaps = 64/317 (20%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK-ITTKHIRSGVESR-- 126 T+K L ++ +A S ++ + I+ G+ + I + + + Sbjct: 80 TIKELAEKFLALKE-TEVAKTSLNTYRAVIKNILSIIGEKNLASSINKEKLLEVRKELLT 138 Query: 127 --------------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172 + + ++T++ +F++ V Y+A NP + K Sbjct: 139 GYQIPKSNYIVTQPGRSAVTVNNYMTNLNAVFQFGVDNGYLADNPFKGISPLKESRTIPD 198 Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIK----- 225 P ++E+ + Q + + +Y+G+R + C G + + N I+ Sbjct: 199 PLSREEFIRLIDAC-RNQQAKNLWCVSVYTGVRPGELCALGWEDIDLKNGTMMIRRNLAK 257 Query: 226 --------TQKTGTIITV--ELPDGFMKLLAMTPIGKETFF------------------- 256 T +I + D + +T + KE Sbjct: 258 DRFTVPKTQAGTNRVIHLIKPAIDALRSQMTLTRLSKEHIIDVHLREYGRTEKQKCTFVF 317 Query: 257 -------INNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELM 308 + N + A +AG+ ++ ++ R A S AGA + Sbjct: 318 QPEVSARVKNYGDHFTVDSIRQMWDAAIKRAGLRHRKSYQSRHTYACWSLTAGANPAFIA 377 Query: 309 ATYGWKTVDQA-ETYTK 324 G + Y K Sbjct: 378 NQMGHADAQMVFQVYGK 394 >gi|309793340|ref|ZP_07687767.1| site-specific recombinase, phage integrase family [Escherichia coli MS 145-7] gi|308122927|gb|EFO60189.1| site-specific recombinase, phage integrase family [Escherichia coli MS 145-7] Length = 431 Score = 94.3 bits (233), Expect = 2e-17, Method: Composition-based stats. Identities = 45/317 (14%), Positives = 97/317 (30%), Gaps = 64/317 (20%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK-ITTKHIRSGVESR-- 126 T+K L ++ +A S ++ + I+ G+ + I + + + Sbjct: 85 TIKELAEKFLALKE-TEVAKTSLNTYRAVIKNILSIIGEKNLASSINKEKLLEVRKELLT 143 Query: 127 --------------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172 + + ++T++ +F++ V Y+A NP + K Sbjct: 144 GYQIPKSNYIVTQPGRSAVTVNNYMTNLNAVFQFGVDNGYLADNPFKGISPLKESRSIPD 203 Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIK----- 225 P ++E+ + Q + + +Y+G+R + C G + + N I+ Sbjct: 204 PLSREEFIRLIDAC-RNQQAKNLWCVSVYTGVRPGELCALGWEDIDLKNGTMMIRRNLAK 262 Query: 226 --------TQKTGTIITV--ELPDGFMKLLAMTPIGKETFF------------------- 256 T +I + D + +T + KE Sbjct: 263 DRFTVPKTQAGTNRVIHLIKPAIDALRSQMTLTRLSKEHIIDVHLREYGRTEKQKCTFVF 322 Query: 257 -------INNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELM 308 + N + A +AG+ ++ ++ R A S AGA + Sbjct: 323 QPEVSARVKNYGDHFTVDSIRQMWDAAIKRAGLRHRKSYQSRHTYACWSLTAGANPAFIA 382 Query: 309 ATYGWKTVDQA-ETYTK 324 G + Y K Sbjct: 383 NQMGHADAQMVFQVYGK 399 >gi|300819734|ref|ZP_07099923.1| site-specific recombinase, phage integrase family [Escherichia coli MS 107-1] gi|300527685|gb|EFK48747.1| site-specific recombinase, phage integrase family [Escherichia coli MS 107-1] Length = 431 Score = 94.3 bits (233), Expect = 2e-17, Method: Composition-based stats. Identities = 45/317 (14%), Positives = 98/317 (30%), Gaps = 64/317 (20%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK-ITTKHIRSGVESR-- 126 T+K L ++ +A+ S ++ + I+ G+ + I + + + Sbjct: 85 TIKELAEKFLALKE-TEVAITSLNTYRAVIKNILSIIGEKNLASSINKEKLLEVRKELLT 143 Query: 127 --------------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172 + + ++T++ +F++ V Y+A NP + K Sbjct: 144 GYQIPKSNYIVTQPGRSAVTVNNYMTNLNAVFQFGVDNGYLADNPFKGISPLKESRTIPD 203 Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIK----- 225 P ++E+ + Q + + +Y+G+R + C G + + N I+ Sbjct: 204 PLSREEFIRLIDAC-RNQQAKNLWCVSVYTGVRPGELCALGWEDIDLKNGTMMIRRNLAK 262 Query: 226 --------TQKTGTIITV--ELPDGFMKLLAMTPIGKETFF------------------- 256 T +I + D + +T + KE Sbjct: 263 DRFTVPKTQAGTNRVIHLIKPAIDALRSQMTLTRLSKEHIIDVHLREYGRTEKQKCTFVF 322 Query: 257 -------INNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELM 308 + N + A +AG+ ++ ++ R A S AGA + Sbjct: 323 QPEVSARVKNYGDHFTVDSIRQMWDAAIKRAGLRHRKSYQSRHTYACWSLTAGANPAFIA 382 Query: 309 ATYGWKTVDQA-ETYTK 324 G + Y K Sbjct: 383 NQMGHADAQMVFQVYGK 399 >gi|253682989|ref|ZP_04863775.1| XerC/D family recombinase [Clostridium phage D-1873] gi|253560818|gb|EES90281.1| XerC/D family recombinase [Clostridium phage D-1873] Length = 317 Score = 94.3 bits (233), Expect = 2e-17, Method: Composition-based stats. Identities = 47/285 (16%), Positives = 101/285 (35%), Gaps = 26/285 (9%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES---- 125 T+K+L ++Y+ L+ + ++E D + + T+ + Sbjct: 23 TMKYL-NKYKIDMSIRELSEKTIYNYEMDLYNWFTYILDKQFNQCITELNEDDIMEFLYF 81 Query: 126 ---RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR--PWTKEDMQ 180 + + + + S+ +K+ ++ + NP ++RP++ T+ + TK+ ++ Sbjct: 82 CKQQGNNSRRMKRRMASISAFYKFLRKKRIIKENPMEFIDRPRKDTDVVTQTFLTKDQVE 141 Query: 181 QFKSFWSEGSQPRLA--FEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVE 236 Q K + +L L + R + + + N I +K G I+ + Sbjct: 142 QIKRKLKDHGDIQLETYVLLSLSTMARVNAISNIKWEQIDFENRIIGDVLEKEGKIVDLY 201 Query: 237 LPDGFMKLLAMTP-------IGKETFFINNDKQKMN---ATQFSIWFKAKATKAGVN-KS 285 +LL I E FI+ + + + S W K GV Sbjct: 202 FNKEVKELLLQLQSIRKENNIESEYVFISKYNKGYSNVNTSTLSKWTKKVGEMIGVPTLH 261 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAET-YTKGADRI 329 H R AT+ +AG + + + +D + Y K + Sbjct: 262 CHDWRHSGATLLKNAGMPIERVSSLLHHEGLDVTKKFYIKEDTQK 306 >gi|16760822|ref|NP_456439.1| integrase [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|25301774|pir||AC0740 probable integrase STY2077 [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16503119|emb|CAD05622.1| putative integrase [Salmonella enterica subsp. enterica serovar Typhi] Length = 358 Score = 94.3 bits (233), Expect = 2e-17, Method: Composition-based stats. Identities = 42/278 (15%), Positives = 87/278 (31%), Gaps = 30/278 (10%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--K 127 T+ I Y+ ++ N+ + + I K G +ITT+HI ++ Sbjct: 75 TMADWIERYKTILIRRKVSRNTYKIRVNQLETIKEKLGGVLLTEITTRHIAEFLDLWIEG 134 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF----K 183 + A + + +F+ A+ + ++ NP PK R ++ + + Sbjct: 135 GKNTMAGSMRSVLSDMFREAIVEGRISQNPVTPTRAPKIVVTRERL----KLKTYNCIRE 190 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243 + + LA + L +G R D + ++ I+ KTG +I + L Sbjct: 191 AADQLPTWFPLAMDLALVTGQRREDITNMRFSEIYDDRLHIRQIKTGMMIAIPLSLSLPV 250 Query: 244 LLAMTPI--------GKETFFINNDKQKMN------ATQFSIWFKAKATKAGV-----NK 284 + + I+ +K + + F A G+ Sbjct: 251 AGLRLGTVVEQCRLVSRGDYLISAGIRKNSPDGSIHPDGLTKKFVAARKLTGIQFSENPP 310 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 + H +R A G + + Y Sbjct: 311 TFHEIR-SLAGRLYKETCGEEFAQRLLGHTSEKTTKMY 347 >gi|325955709|ref|YP_004293183.1| integrase/recombinase [Lactobacillus acidophilus 30SC] gi|325334689|gb|ADZ08242.1| integrase/recombinase [Lactobacillus acidophilus 30SC] Length = 284 Score = 94.3 bits (233), Expect = 2e-17, Method: Composition-based stats. Identities = 45/269 (16%), Positives = 92/269 (34%), Gaps = 22/269 (8%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGVESRKH--- 128 LI E+ + A + + +E + + ++ + +E + Sbjct: 9 LIDEFIEDLRLQGRAEGTLLEYEMRLKEFAEFFQLKALALDQVKKSDLTEFMEQKLSNCL 68 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK-RKTEGIRPWTKEDMQQFKSFWS 187 S+ L++ RV WAV + Y++ + PK + IR + E++ FK + Sbjct: 69 KVSTIRGKLSTFRVFCLWAVNKNYLSEVIISPQDYPKNTNVKRIRRLSDENLTIFKHYID 128 Query: 188 -EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI----FSIKTQKTGTIITVELPDGFM 242 R AF L+ SG R +++ + + I+ K G+ + + D Sbjct: 129 TLQPNARAAFYLLIGSGCRVAEAANLKAEDVTLRGKSVYIDIRNAKWGSDRNIPIVDADA 188 Query: 243 -----KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATIS 297 K + F +++ + A G+N H +R A + Sbjct: 189 AKIVWKYRTEVEVDNRPLF------RLSKRTLQNYATNFAKSTGINFYCHLLRHTFAGLL 242 Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGA 326 + G + G K++ Y + A Sbjct: 243 TEKGVPLTTVQYLLGHKSLGMTAHYAQSA 271 >gi|56410450|ref|YP_145824.1| integrase/recombinase [Geobacillus kaustophilus HTA426] gi|56378347|dbj|BAD74256.1| integrase/recombinase [Geobacillus kaustophilus HTA426] Length = 304 Score = 94.3 bits (233), Expect = 2e-17, Method: Composition-based stats. Identities = 43/290 (14%), Positives = 86/290 (29%), Gaps = 39/290 (13%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR----KHT 129 +++EY + N+ IS+ + + +T IR ++ + Sbjct: 1 MLNEYVAYLQEKGASRNTIISYTNDLNIFFHDLHIRPDDYVTPADIRKWIQHMLNPEEGK 60 Query: 130 P---SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP---WTKEDMQQFK 183 P S+ + L S+R + WAV Y+ NP ++ K E T+E+ + Sbjct: 61 PLAISTINRRLNSLRSFYAWAVEHHYIEQNPMKDIQDLKTADEDHEKIMWLTEEEFEDLL 120 Query: 184 SF-------------WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230 + + R L Y+GLR + + L + I+ G Sbjct: 121 QRMRKKPVQSRGVDPEEKYRRDRAVVYLLTYAGLRVEELSNLKLTDLDLEMKRIRIVGKG 180 Query: 231 TII-TVEL-----------PDGFMKLLAMTP--IGKETFFINNDKQKMNATQFSIWFKAK 276 + TV + + ++ P F + K + ++ Sbjct: 181 MKVRTVPISNILLAELEDWLEFRAEMAKKKPHVAASPYVFYSQRSPKFSVRGIQRMIESY 240 Query: 277 ATKAGVNKSAHGVRKFSATISADA-GATAHELMATYGWKTVDQAETYTKG 325 + + H R A ++ G + Y K Sbjct: 241 SLP-NKKLTPHMFRHTFCKWMLKATNNDIEKVRRLAGHSNIATTSRYLKD 289 >gi|159901727|ref|YP_001547973.1| integrase family protein [Herpetosiphon aurantiacus ATCC 23779] gi|159894766|gb|ABX07845.1| integrase family protein [Herpetosiphon aurantiacus ATCC 23779] Length = 326 Score = 94.3 bits (233), Expect = 2e-17, Method: Composition-based stats. Identities = 48/304 (15%), Positives = 95/304 (31%), Gaps = 46/304 (15%) Query: 64 PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD-----YRKITTKH 118 P+ + ++ LI + + L +R + S ++ R + + Sbjct: 2 PQPESEPIESLIDRWWTNPG-DDLTAATRTRYRSALRRLCRWFAAAERRSLLLADLHPIS 60 Query: 119 IRSGVESRKHT--PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE-GIRPWT 175 + E+ K T S+ L+++R W V Q Y+A NP ++ KR T + + Sbjct: 61 LAGYREALKQTDAASTVNTHLSAIRTWCVWLVDQGYLATNPAQRLKLVKRTTPSAPKALS 120 Query: 176 KEDMQQFKSFWSE---GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFS----IKTQK 228 + + + L+ +G+R S+ +Q S I+ K Sbjct: 121 PAHVNALLRQAQFTRYPLRNTAILQVLIQTGMRISECAALCWHDIQYGERSGHALIRAGK 180 Query: 229 TGTIITVELP------------------DGFMKLLAMTPIGKE-----TFFINNDKQKMN 265 T+ TV L K+ P +E + + + ++ Sbjct: 181 GNTVRTVPLNESARCALASYVAPLLGVQPSLHKVARAWPQRQEGDPRCPLWTSERQHALS 240 Query: 266 ATQFSIWFKAKATKAGVNK------SAHGVRKFSATI-SADAGATAHELMATYGWKTVDQ 318 + S K + H +R AT A L G +++ Sbjct: 241 LREMSHMIHQLVRDTSARKLLPASTTPHSLRHTFATRYLARHPHDLVGLARLLGHRSITT 300 Query: 319 AETY 322 + Y Sbjct: 301 TQIY 304 >gi|332169104|gb|AEE18359.1| integrase family protein [Krokinobacter diaphorus 4H-3-7-5] Length = 295 Score = 94.3 bits (233), Expect = 2e-17, Method: Composition-based stats. Identities = 39/263 (14%), Positives = 89/263 (33%), Gaps = 23/263 (8%) Query: 85 GSLAVNSRISFESYFDQIIR----KSGDFDYRKITTKHIRSGVESRKH---TPSSAIQFL 137 + + ++ I++E + + + + I IRS + S + + + + Sbjct: 14 KNYSKHTVIAYEKDVLEFLAFVKITFDESNLVDIHYAQIRSWIVSLVDNDVSNRTVNRKI 73 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS-----QP 192 +S++ +K+ ++ V +P K P+++ ++ E + Sbjct: 74 SSLKAYYKFLLKIGEVEASPLAKHTSLKTPKRLQIPFSEVEVGAVFDRLKEADDFATLRD 133 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAM---- 247 L E L +G+R ++ V + +IK K V + + Sbjct: 134 LLIVELLYATGMRRAELVDLTVGSIDVVQKTIKIIGKRNKERIVPMLSSVVVTYDRYIAV 193 Query: 248 ----TPIGKETFFINNDKQKMNATQFSIWFKAK--ATKAGVNKSAHGVRKFSATISADAG 301 G++ + N K+ +T T + S H +R AT + G Sbjct: 194 RSSVASSGEDALLVTNKGAKIYSTLVYRIINRYFSETSDKLKTSPHILRHSFATHLLNQG 253 Query: 302 ATAHELMATYGWKTVDQAETYTK 324 A + + G ++ + YT Sbjct: 254 ADLNIVKELLGHASLASTQVYTH 276 >gi|330826868|ref|YP_004390171.1| integrase family protein [Alicycliphilus denitrificans K601] gi|329312240|gb|AEB86655.1| integrase family protein [Alicycliphilus denitrificans K601] Length = 331 Score = 94.3 bits (233), Expect = 2e-17, Method: Composition-based stats. Identities = 40/308 (12%), Positives = 90/308 (29%), Gaps = 34/308 (11%) Query: 49 SALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD 108 AL + + P T+ +R + + + F+QI Sbjct: 8 QALLQGFFTDRMMRQRQASPHTISSYRDSFRLLLRFAQRRIGVQPQ-RLTFEQI------ 60 Query: 109 FDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWA-----VRQEYVAINPCLSVER 163 + + +R + +S LT++R F++A + + +R Sbjct: 61 --DASLVAAFLEDLQSARGISAASRNLRLTAIRSFFRYAAFELPTHAAQIQRVLAIPSKR 118 Query: 164 PKRKTEGIRPWTKEDMQQFKSFWS----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN 219 R G +E++ G + + +GLR S+ + Sbjct: 119 CTRAQIGF--LAREEIDALLHAPDLQTRAGRRDHALMLLAVQTGLRLSELTALRRDDTEL 176 Query: 220 NIF-SIKTQKTGTIITV-ELPDG----FMKLLAMTPIGKETFFINNDKQKMNATQFSIWF 273 + ++ G V L LL ++ F + +++A Sbjct: 177 GVGAHVRVIGKGRKERVTPLTKATAQALRALLREIDAEQDLVFCSARGTRLSADAVQHLV 236 Query: 274 KAKATKAGVNK--------SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 +A + + H +R +A AG + G ++++ + Y Sbjct: 237 SKHVARAAQSCPSLACKHVTPHVLRHSAAMELLQAGVDRTVIAMWLGHESIETTQIYLDA 296 Query: 326 ADRIRLGI 333 +I+ Sbjct: 297 NLQIKQAA 304 >gi|281491988|ref|YP_003353968.1| phage integrase [Lactococcus lactis subsp. lactis KF147] gi|281375697|gb|ADA65201.1| Phage protein, integrase [Lactococcus lactis subsp. lactis KF147] Length = 359 Score = 94.3 bits (233), Expect = 2e-17, Method: Composition-based stats. Identities = 41/338 (12%), Positives = 108/338 (31%), Gaps = 28/338 (8%) Query: 13 KERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR-KKPTTL 71 + ++G Y F+ G++ E + A +E I++P K T Sbjct: 5 AYKKKNGTTAYKFKAYIGKKNGKSQYAEKSGFKTKADARAALHNIQEEIDNPTPKSAMTF 64 Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131 K L E+ + ++ ++ G T +++ Sbjct: 65 KELYDEWLLVYEKEVQNSTYYKTTRAFEKHVLPVIGSTKLSDFTPMELQNFRNDLSEKLK 124 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCL-----SVERPKRKTEGIRPWTKEDMQQFKSFW 186 A + +R +F A Y+ NP L +++ + + ++++ F + Sbjct: 125 FARKLFGMVRKVFNHAALLSYIQANPALPVTSQGIKKKVEEKKDFY--DTDELRDFMALV 182 Query: 187 SEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244 + + + F L ++G+R + + + + I + + + E+ Sbjct: 183 EKTNDIKKIALFRILAFTGIRKGELLALEWKDYRKSTLDINKAISHSPVGYEILPPKANS 242 Query: 245 LAMTPIGKET----------------FFINNDKQKMNATQFSIWFKAKATKAGV-NKSAH 287 + + ++T F + + ++ ++ W + + H Sbjct: 243 NRLLSLDEKTCKILDELHQTYPESTRIFESENGGMLSPSKPRKWLLEITKEKEIEPIRIH 302 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTK 324 R A++ ++G + ++ G + YT Sbjct: 303 AFRHTHASLLFESGMSLKQVQYRLGHADLKTTMNIYTH 340 >gi|239907872|ref|YP_002954613.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1] gi|239797738|dbj|BAH76727.1| putative site-specific recombinase [Desulfovibrio magneticus RS-1] Length = 374 Score = 94.3 bits (233), Expect = 2e-17, Method: Composition-based stats. Identities = 52/356 (14%), Positives = 103/356 (28%), Gaps = 54/356 (15%) Query: 16 TRHGKIIYYFRKGHGRRIRLPYPHEST---FIPAYMSALTGST--------PKREYINSP 64 R G+ + ++ G+R + A+ A++ + P + I+SP Sbjct: 5 DRDGRWMVFYHDETGKRRDKSFGRGEEAYAQAEAFNKAVSDAKKLCTALPLPPTDLISSP 64 Query: 65 RKKP-------------------TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK 105 P T + L +Y N+ D Sbjct: 65 APAPVKMIEEITLPEKTIQSGQGMTFRELAGKYLAHLKVSGRTENNTKKLAKMIDNQFNP 124 Query: 106 S-GDFDYRKITTKH-------IRSGVESRKHTPSS---AIQFLTSMRVLFKWAVRQEYVA 154 GD +T +++ P S ++ + +F + V Sbjct: 125 IIGDRVVNSMTYIDDMVPFIQFFQETNGKQNRPRSQPTVNRYGDYVNAIFNFGVTTGLTT 184 Query: 155 INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSD--SCRA 212 +NP ++ + K ++ T +D+++ R A E G R + Sbjct: 185 VNPMKGRKKSREKPRDVQ-LTVDDVKRIMDHAEP--HVRWAMEVCFSLGTRPGESELLAL 241 Query: 213 GVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET-FFINNDKQKMNATQF 269 H+ I I KT T V + + + ++ + I Q + + Sbjct: 242 KWDHIDFDKGIAKIYASKTRTYRVVPISPTLLGKMKEVKTESQSGYVIEWRGQPIGMIRK 301 Query: 270 SIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETY 322 F+ +AG+ + +R AT GA + G + Y Sbjct: 302 G--FRRACERAGITYPVRMYDLRHLFATTMLSKGADLAAVSKLLGHSMISTTTSHY 355 >gi|229492422|ref|ZP_04386226.1| site-specific recombinase, phage integrase family protein [Rhodococcus erythropolis SK121] gi|229320651|gb|EEN86468.1| site-specific recombinase, phage integrase family protein [Rhodococcus erythropolis SK121] Length = 611 Score = 94.3 bits (233), Expect = 2e-17, Method: Composition-based stats. Identities = 51/331 (15%), Positives = 104/331 (31%), Gaps = 38/331 (11%) Query: 25 FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP---TTLKWLISEYRKS 81 F +G G R P+P +A + P+ + + P T++ + + S Sbjct: 180 FHRGQGPR---PHP------RKRWAARS--VPEIGWDRAEECAPVMVATMRRYLDQIGIS 228 Query: 82 AHWGSLA--VNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139 S+ + F + D + + ++ + +R + T+ Sbjct: 229 LRVSSVDCIETTLRQFAGHLATTSDVVCVADIDRTHIEAYKTWLAARPGYRKNTNLSKTT 288 Query: 140 MRVLFKW--AVRQEYVAIN----PCLSV----ERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 + + A Q + + P + +RP + R +F + Sbjct: 289 IGMRMGHLSAFYQRIIEWDYPDIPARAPVYSSDRPIKDKPLPRFLDDGAAAKFLTAARNL 348 Query: 190 SQP--RLAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVELPDGFMK 243 RLA E L +G+R + + + I K V L Sbjct: 349 PDEFGRLAIEMLSRTGMRKGELLDLTIDSVVQIGSAYWLRIPVGKLHNDRYVPLHPQLKT 408 Query: 244 LL-----AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATIS 297 ++ + + + T+ ++ A AG+ H +R AT + Sbjct: 409 MIDTWLEHRPDWQDSPLLFTDRGRPIPGTRIDKAVQSAAAAAGIGHVHPHQLRHTLATQA 468 Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADR 328 + G + + A G KT++ Y + ADR Sbjct: 469 INRGMSLEAIAALLGHKTMEMTMVYARIADR 499 >gi|85813740|emb|CAJ65897.1| shufflon-specific recombinase [Salmonella enterica subsp. enterica serovar Typhimurium] Length = 308 Score = 94.3 bits (233), Expect = 2e-17, Method: Composition-based stats. Identities = 44/281 (15%), Positives = 91/281 (32%), Gaps = 25/281 (8%) Query: 61 INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQI------IRKSGDFDYRKI 114 + SPR + +L + +Y K+ + + + + D Sbjct: 1 MPSPRIRKMSLSRALDKYLKTVSVHKKGHQQEFYRSNVIKRYPIALRNMDEITTVDIATY 60 Query: 115 TTKHIRSGVESRKHTPSSAIQF---LTSMRVLFKWA-VRQEYVAINPCLSVERPKRKTEG 170 + + + R P + L + LF A V NP V +PK + Sbjct: 61 RDVRL-AEINPRTGKPITGNTVRLELALLSSLFNIARVEWGTCRTNPVELVRKPKVSSGR 119 Query: 171 IRPWTKEDMQQFKSFWSE-GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQ 227 R T + ++ ++ E + F L + +R + +H+ + + Sbjct: 120 DRRLTSSEERRLSRYFREKNLMLYVIFHLALETAMRQGEILALRWEHIDLRHGVAHLPET 179 Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKM--NATQFSIWFKAKATKAGV-NK 284 K G V L L M P +N A+ F ++ + + + Sbjct: 180 KNGHSRDVPLSRRARNFLQMMP-------VNLHGNVFDYTASGFKNAWRIATQRLRIEDL 232 Query: 285 SAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTK 324 H +R + + + G E+ A G ++++ + YT Sbjct: 233 HFHDLRHEAISRFFELGSLNVMEIAAISGHRSMNMLKRYTH 273 >gi|328542282|ref|YP_004302391.1| Integrase family protein [Polymorphum gilvum SL003B-26A1] gi|326412031|gb|ADZ69094.1| Integrase family protein [Polymorphum gilvum SL003B-26A1] Length = 376 Score = 94.3 bits (233), Expect = 2e-17, Method: Composition-based stats. Identities = 51/314 (16%), Positives = 102/314 (32%), Gaps = 42/314 (13%) Query: 52 TGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDY 111 +G TL+ +I +RK + A +++ + S+ + G + Sbjct: 46 SGIRKGEVKNVVRTAATKTLQDVIDRFRKEV-FIHRAESTKRAEGSFLAYWEKALGSYAL 104 Query: 112 RKITTKHIRSGV---------------ESRKHTPSSA---------IQFLTSMRVLFKWA 147 IT + + ++ P +A + ++ VLFK+A Sbjct: 105 AYITADMVSEKMAELAAAGDGRRKADEDAEADKPKAAPKPKSRKTLKHYRDTLAVLFKYA 164 Query: 148 VRQEYVAINPCLSVERP-KRKTEGIRPWTKEDMQQFKSFWSEGSQPRL--AFEFLLYSGL 204 ++ + A +P V R K + E R + E+ ++ L F L +G Sbjct: 165 IQWGWTASSPLDGVNRITKIRNERTRYLSDEERKRLLDACKASDNEHLYPVVVFALSTGA 224 Query: 205 RCSDSCRAGVQHLQNNIFS--IKTQKTGTIITVELPDGFMKLL-----------AMTPIG 251 R S+ + L + ++ K G V + LL Sbjct: 225 RKSEILGLTLDDLDLTRDTAILRDTKNGDTRAVPVVHHLRDLLEDQVETVNRFYDELEPP 284 Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMAT 310 +T ++ + ++ A +N H +R +A+ A GA+ E+ Sbjct: 285 ADTRWLFPRRDGQEPIDIRKAWENARDAAKINDFRFHDLRHSTASYLAMNGASLVEIAEI 344 Query: 311 YGWKTVDQAETYTK 324 G +T+ Y Sbjct: 345 LGHRTLQMVRRYAH 358 >gi|323181030|gb|EFZ66568.1| integrase domain protein [Escherichia coli 1180] Length = 233 Score = 94.3 bits (233), Expect = 2e-17, Method: Composition-based stats. Identities = 34/209 (16%), Positives = 68/209 (32%), Gaps = 8/209 (3%) Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEY-VAINPCLSVERPKRKTEGIRPWTKE 177 +R + PS+ + + ++ +F + + + NP ++ K + +K Sbjct: 17 LRVSRIEQGIQPSTINREIGALSAMFTALISSGHFLNDNPVQGLKGMKVNEREMGYLSKS 76 Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL 237 + Q +E RLA E LL +G R + + + + + K TV + Sbjct: 77 ECVQLLDALAENPDERLAVEILLSTGARWGEVAALEQRRVLHCRITFSKTKNSKNRTVPI 136 Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATIS 297 + + + G + F D + K A ++ H +R A+ Sbjct: 137 SESLFE--KIKKRGGKLVFPTLD-----YSLVRDVIKTVAPDVPDGQAVHALRHTFASHF 189 Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGA 326 G L G + Y A Sbjct: 190 MMNGGNILTLQKILGHAKIQTTMIYAHLA 218 >gi|152990726|ref|YP_001356448.1| phage integrase family site specific recombinase [Nitratiruptor sp. SB155-2] gi|151422587|dbj|BAF70091.1| site-specific recombinase, phage integrase family [Nitratiruptor sp. SB155-2] Length = 353 Score = 94.3 bits (233), Expect = 2e-17, Method: Composition-based stats. Identities = 37/285 (12%), Positives = 92/285 (32%), Gaps = 64/285 (22%) Query: 74 LISEYRKSAHWGSLAVNSRISFE----SYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129 +I ++ S+ L+ ++ ++ ++F I + + D +I Sbjct: 102 MIIDFLTSST-AGLSDATKKNYRIAMINFFRYIDKNNEDKHLYEIE-------------- 146 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS----- 184 L + L + K + +++++ +F Sbjct: 147 -------LKNWGGL-------------------KGKAGQKLPVFLSEDEITKFLHAIDTY 180 Query: 185 --FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITV--- 235 ++ R + +LY+G+R S++ ++++ + I + + + Sbjct: 181 PFRPDVAARNRAIIKMILYTGIRVSEAMNLEMKNIILQKDVYLLKITGKGNKARVVMIKA 240 Query: 236 -ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK---SAHGVRK 291 ++ + L K F N + S + G+ K AH +R Sbjct: 241 QKIRKDLEEWLTKRNCEKGLLFCNKKGSPLTQAYISRMVEKILLSCGIRKEKNGAHMLRH 300 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNS 336 AT+ + + + G ++D + YT D+ +L S Sbjct: 301 TFATLLYNKSKDLVLVQESLGHASLDTSRIYTH-FDKEKLSKAAS 344 >gi|219848551|ref|YP_002462984.1| integrase domain-containing protein SAM domain-containing protein [Chloroflexus aggregans DSM 9485] gi|219542810|gb|ACL24548.1| integrase domain protein SAM domain protein [Chloroflexus aggregans DSM 9485] Length = 317 Score = 94.3 bits (233), Expect = 2e-17, Method: Composition-based stats. Identities = 42/280 (15%), Positives = 88/280 (31%), Gaps = 38/280 (13%) Query: 86 SLAVNSRISFESYFD----QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMR 141 L+ N+ S+ + ++ IT I+ + RK P + + + S+ Sbjct: 31 RLSENTITSYRCDLRTAGLALCQE-----LSTITAHDIQQFLAGRKEQPGTTNRRIASLN 85 Query: 142 VLFKWAVRQEYVAINPCLSV-ERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP-RLAFEFL 199 F+WA + YV NP + R + + +++ + QP RL F L Sbjct: 86 RFFRWAKERGYVTHNPVEQIGGRLPTEHRPQPIANEHELRALDQAIAAAPQPYRLIFTLL 145 Query: 200 LYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVELPDGFM-----------KL 244 G+R + + + + ++ K+G+ + L M + Sbjct: 146 REIGIRTDEVLNLNLGDVILEPGREMLLVRDSKSGSKRMIALTPDAMPRSLRGLRHWVRE 205 Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV----------NKSAHGVRKFSA 294 + P F ++ + + + A A + + H +R +A Sbjct: 206 MDHLPPDTP-LFRSSRGTRASYDTLHRRWVAVCRAARLIDVVDGREQPRYTLHHLRHTAA 264 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIK 334 T A + G + YT+ + Sbjct: 265 TKLV-AFYPEQVVRRILGHRDPRSTRRYTELVRNRHHAAE 303 >gi|325848894|ref|ZP_08170404.1| site-specific recombinase, phage integrase family [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325480538|gb|EGC83600.1| site-specific recombinase, phage integrase family [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 353 Score = 94.3 bits (233), Expect = 2e-17, Method: Composition-based stats. Identities = 42/247 (17%), Positives = 82/247 (33%), Gaps = 24/247 (9%) Query: 101 QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160 I+ G ++IT + + S K F + R++ +A++ Y NP + Sbjct: 87 HILPVFGQTKIQEITVQDCQKFALSLKDYVKGKEYFGYAKRII-DFAIKMNYTKKNPFNN 145 Query: 161 VERP--KRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ 218 V P K+ + I T ++ ++ F + Y+GLR + + Sbjct: 146 VILPEFKKGKKQINFLTIVEVNTLLDYYKNNQYWYTLFRLMCYTGLRRGEILALTWDDID 205 Query: 219 NNIFSIKTQKT-----------------GTIITVELPDGFMKLLAMTPIGKET--FFINN 259 ++ KT +I T++L D + L I + F N Sbjct: 206 FKNKTLTVNKTLSIGEYKKIVLSSPKTESSIRTIDLDDKTILELQKLKIQSKYKLIFPNK 265 Query: 260 DKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318 + + + + + K H +R A++ +GA+ + G V Sbjct: 266 KGKYSRLSNIADKLNKAIKETNIKKIRVHDLRHTHASLLFASGASIKYVQTRLGHADVKT 325 Query: 319 A-ETYTK 324 YT Sbjct: 326 TLNIYTH 332 >gi|215486887|ref|YP_002329318.1| predicted integrase [Escherichia coli O127:H6 str. E2348/69] gi|291282843|ref|YP_003499661.1| integrase [Escherichia coli O55:H7 str. CB9615] gi|215264959|emb|CAS09345.1| predicted integrase [Escherichia coli O127:H6 str. E2348/69] gi|290762716|gb|ADD56677.1| integrase [Escherichia coli O55:H7 str. CB9615] Length = 324 Score = 94.3 bits (233), Expect = 2e-17, Method: Composition-based stats. Identities = 49/301 (16%), Positives = 98/301 (32%), Gaps = 12/301 (3%) Query: 28 GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRK-SAHWGS 86 G+RIR + +S + L NS ++P ++ LI + K Sbjct: 19 RKGKRIRKKFKTKSDAVLYERWVLAQQHNNEWKGNSIDRRPLSV--LIDLWWKYHGQLMK 76 Query: 87 LAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKW 146 N+R+ + + + T+ +R + PS+ + + ++ +F Sbjct: 77 SGHNTRLKLLRLSEAMDDPCVHKLNTTMLTE-LRVSRIEQGIQPSTINREIGALSAMFTA 135 Query: 147 AVRQEY-VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLR 205 + + + NP ++ K + +K + Q +E RLA E LL +G R Sbjct: 136 LISSGHFLNDNPVQGLKGMKVNEREMGYLSKSECVQLLDALAENPDERLAVEILLSTGAR 195 Query: 206 CSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMN 265 + + + + + K TV + + + + G + F D + Sbjct: 196 WGEVAALEQRRVLHCRITFSKTKNSKNRTVPISESLFE--KIKKRGGKLVFPTLD-YPLV 252 Query: 266 ATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 K A ++ H +R A+ G L G + Y Sbjct: 253 RD----VIKTVAPDVPDGQAVHALRHTFASHFMMNGGNILTLQKILGHAKIQTTMIYAHL 308 Query: 326 A 326 A Sbjct: 309 A 309 >gi|312115313|ref|YP_004012909.1| integrase family protein [Rhodomicrobium vannielii ATCC 17100] gi|311220442|gb|ADP71810.1| integrase family protein [Rhodomicrobium vannielii ATCC 17100] Length = 334 Score = 94.3 bits (233), Expect = 2e-17, Method: Composition-based stats. Identities = 44/319 (13%), Positives = 91/319 (28%), Gaps = 46/319 (14%) Query: 61 INSPRKKPTTLKW--LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGDF--DYRKIT 115 + P P + LI Y + N+ ++ + ++ R + + Sbjct: 1 MGRPPSAPASAADEPLIDAYLAMMRAERGASANTVAAYAADLREMSRFLAERGETFAACA 60 Query: 116 TKHIRSGVESRKHT---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172 + + R +SA + L+ ++ + V ++ +P ++ K + Sbjct: 61 RADLEAFFSDRAEAGLLANSAARKLSCLKRFMLFLVAEKMRDDDPARLIDGVKARRVLPM 120 Query: 173 PWTKEDMQQFKSFW--------SEGSQPRLAFEFL------LYSGLRCSDSCRAGVQHLQ 218 T ++ + S R A +GLR S+ Sbjct: 121 TLTIAEVDLLLDAAHQAAAFGDPQTSSGRRALRLACLLELLYATGLRVSELVGLPRAAFL 180 Query: 219 NNIFSIKT-QKTGTIITVELPDGFMKLLAM-----------------TPIGKETFFINND 260 + + K G + L +L + + Sbjct: 181 GDRKMLTVKGKGGRERIIPLNAKARTVLDCWLDALEAAARADGKAGGAGASASKWLFPSW 240 Query: 261 K--QKMNATQFSIWFKAKATKAGVNK---SAHGVRKFSATISADAGATAHELMATYGWKT 315 + +F+ KA + G++ S H +R AT D G L G Sbjct: 241 GEDGHLTRQKFAQDLKALGARLGIDAERLSPHVLRHAFATHLLDRGVDLRVLQTLLGHAD 300 Query: 316 VDQAETYTKG-ADRIRLGI 333 + + YT DR+R + Sbjct: 301 ISTTQIYTHVMEDRLRQTV 319 >gi|331683085|ref|ZP_08383686.1| putative lambdoid prophage Qin defective integrase [Escherichia coli H299] gi|331079300|gb|EGI50497.1| putative lambdoid prophage Qin defective integrase [Escherichia coli H299] Length = 426 Score = 94.3 bits (233), Expect = 2e-17, Method: Composition-based stats. Identities = 45/317 (14%), Positives = 97/317 (30%), Gaps = 64/317 (20%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK-ITTKHIRSGVESR-- 126 T+K L ++ +A S ++ + I+ G+ + I + + + Sbjct: 80 TIKELAEKFLALKE-TEVAKTSLNTYRAVIKNILSIIGEKNLASSINKEKLLEVRKELLT 138 Query: 127 --------------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172 + + ++T++ +F++ V Y+A NP + K Sbjct: 139 GYQIPKSNYIVTQPGRSAVTVNNYMTNLNAVFQFGVDNGYLADNPFKGISPLKESRTIPD 198 Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIK----- 225 P ++E+ + Q + + +Y+G+R + C G + + N I+ Sbjct: 199 PLSREEFIRLIDAC-RNQQAKNLWCVSVYTGVRPGELCALGWEDIDLKNGTMMIRRNLAK 257 Query: 226 --------TQKTGTIITV--ELPDGFMKLLAMTPIGKETFF------------------- 256 T +I + D + +T + KE Sbjct: 258 DRFTVPKTQAGTNRVIHLIKPAIDALRSQMTLTRLSKEHIIDVYLREYGRTEKHKCTFVF 317 Query: 257 -------INNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELM 308 + N + A +AG+ ++ ++ R A S AGA + Sbjct: 318 QPEVSARVKNYGDHFTVDSIRQMWDAAIKRAGLRHRKSYQSRHTYACWSLTAGANPAFIA 377 Query: 309 ATYGWKTVDQA-ETYTK 324 G + Y K Sbjct: 378 NQMGHADAQMVFQVYGK 394 >gi|291551251|emb|CBL27513.1| Site-specific recombinase XerD [Ruminococcus torques L2-14] Length = 409 Score = 94.3 bits (233), Expect = 2e-17, Method: Composition-based stats. Identities = 51/347 (14%), Positives = 99/347 (28%), Gaps = 76/347 (21%) Query: 47 YMSALTGSTPKREYINSPR-------KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF 99 Y L K + I + + TT+ L + L N+ +++ + Sbjct: 40 YARTLDDLREKEKRIQKDKCDGIKTEARYTTIDELFDLWANMKR--GLKNNTFENYKYMY 97 Query: 100 DQIIRK-SGDFDYRKITTKHIRSG----VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVA 154 + +R G + I+ V+ R PS+ T + + + AV +++ Sbjct: 98 NTFVRPVIGSKRISTLKKSDIKKYYNYLVDERNLKPSTIDNIHTVLHQVLQIAVDDDFIR 157 Query: 155 INPCLSV--ERPKR---KTEGIRPWTKEDMQQFKSF---WSEGSQPRLAFEFLLYSGLRC 206 NP +V E K ++E R TK + + F +F F ++ +GLR Sbjct: 158 NNPSDNVLRELKKAHCFQSEKRRALTKHEQELFLNFMKTHPVYEHWYPVFAVMIGTGLRV 217 Query: 207 SDSCRAGVQHLQNN------------------------IFSIKTQKT-GTIITVELPDGF 241 + + F++ T KT ++ V + Sbjct: 218 GEVTGLRWCDIDMESGMIDVNHTLVYYDHRTEGSKSGCYFNVNTTKTLASMRQVPMLGFV 277 Query: 242 MKLLAMTPIGKET---------------FFINNDKQKMNATQFSIWFKAKATKAG----- 281 + +E FIN Q + + + Sbjct: 278 REAFEQEKQKQEDLGLHCEVTIDGYTDFIFINRFGQAQHQATLNKAIRRIIRDCNDEQFL 337 Query: 282 ---------VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319 + S H +R T +AG + G + Sbjct: 338 HSDEPDVLLPHFSCHSLRHTFTTRMCEAGVNIKVIQDALGHSDISTT 384 >gi|145593868|ref|YP_001158165.1| phage integrase family protein [Salinispora tropica CNB-440] gi|145303205|gb|ABP53787.1| phage integrase family protein [Salinispora tropica CNB-440] Length = 325 Score = 94.3 bits (233), Expect = 2e-17, Method: Composition-based stats. Identities = 44/289 (15%), Positives = 93/289 (32%), Gaps = 37/289 (12%) Query: 82 AHWGSLAVNSRISFESYFDQIIRKS---GDFDYRKITTKHIRSGVESRKHT---PSSAIQ 135 A + + ++ ++ + ++ + G +T IRS + ++ T S+ + Sbjct: 30 AQVQNRSTHTVRAYVADVISLLDHAVRAGARTPADLTLAQIRSWLARQRTTGAARSTLAR 89 Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK------------ 183 + R WA R + ++ + P+ E + Sbjct: 90 RSAAARTFSAWAHRDGRLPVDVAAGLASPRAHRELPAVLPVDQAAALLETAHAAPRGQPT 149 Query: 184 ------SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVE 236 + + +L E L +G+R S++C V + ++ K G +V Sbjct: 150 DDVPPGAADPVRLRDQLLLELLYATGVRVSEACGLNVADVDPGRRVLRVFGKGGRERSVP 209 Query: 237 LPDGFMKLLAM----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-S 285 + L + ++N T T AG+ + S Sbjct: 210 YGVPAQRTLDAWLRHGRPRLVGAQSANALLLGARGGRLNPTTARGIVGRYTTAAGLPRTS 269 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIRLGI 333 HG+R +AT + GA + G ++ + YT +R+R Sbjct: 270 PHGLRHTAATHLLEGGADLRTVQELLGHSSLASTQIYTHVSVERLRSAY 318 >gi|57233840|ref|YP_182174.1| phage integrase family site specific recombinase [Dehalococcoides ethenogenes 195] gi|57224288|gb|AAW39345.1| site-specific recombinase, phage integrase family [Dehalococcoides ethenogenes 195] Length = 386 Score = 94.3 bits (233), Expect = 2e-17, Method: Composition-based stats. Identities = 42/305 (13%), Positives = 97/305 (31%), Gaps = 45/305 (14%) Query: 65 RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGV 123 + +T+ + + +L+ + + II G+ ++ +H++ Sbjct: 59 KPGKSTMYEYMQSWLNDYCKPNLSPRTVELYSYISTKHIIPTLGNIPIVELKPQHLQHLY 118 Query: 124 ESRKHTPSSAIQFLTSMRVLF----KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179 K + + + + + V+ K AV+ ++ N +V+ PK + ++ + DM Sbjct: 119 AD-KQSFGLSNRTVQIIHVVLHKALKNAVKTGLLSRNIAEAVDAPKIQRHEMQVMNESDM 177 Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--------------------N 219 Q E + F L++G+R ++ + Sbjct: 178 QVLLEKAKE-TPYYALFYTSLFTGMRRAECLALRWSDIDLILCQVYVLRSMQYVQDADLG 236 Query: 220 NIFSIKTQKT-GTIITVELPD--------------GFMKLLAMTP-IGKETFFINNDKQK 263 + K KT + + L K L + + F + D Sbjct: 237 KRITFKEPKTSKSRRQIALSPSNVIILREHYQDQSELRKTLNLPGLTDSDLVFSHYDGSP 296 Query: 264 MNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ET 321 + + + A + G+N H R A++ G + G ++ +T Sbjct: 297 LLPNSVTHAWIKLARRCGLNGIRLHDARHTHASLLLKQGVHPKIVQERLGHGSIQITLDT 356 Query: 322 YTKGA 326 Y+ A Sbjct: 357 YSHVA 361 >gi|149928222|ref|ZP_01916466.1| Tyrosine recombinase XerC [Limnobacter sp. MED105] gi|149823028|gb|EDM82269.1| Tyrosine recombinase XerC [Limnobacter sp. MED105] Length = 298 Score = 94.3 bits (233), Expect = 2e-17, Method: Composition-based stats. Identities = 43/272 (15%), Positives = 83/272 (30%), Gaps = 27/272 (9%) Query: 74 LISEYRKSAHWGSLAVNSR----ISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129 LI Y + L + + I G + K I + + Sbjct: 13 LIQRYL---DFLRLERRYSDHSVKAAQRDLSLIDTPPGQVTTTAL--KSILAQRHAAGAA 67 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE- 188 P+S + +S R FK+ + V ++P L ++ PK + + + + Sbjct: 68 PASLARLASSWRGFFKYLLNNGIVEVDPTLGLKTPKLTRSLPKAVGVDPLAALLAKPLPQ 127 Query: 189 ---GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK-- 243 +Q + E L +GLR S++ + L + K V + D Sbjct: 128 EFRFAQAHVLIELLYCTGLRISEALTLQAEALNGSTELRVVGKGNKARIVPVVDALQARL 187 Query: 244 ----------LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRK 291 LL + + F++ + A Q A K G+ + H +R Sbjct: 188 REFVEPRQIHLLKLGKGQGASLFVSAKGLALTARQAQRDIADHAAKCGLGQHLHPHMLRH 247 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYT 323 + + G ++ + YT Sbjct: 248 SFGSHLLQGTQNLRAVQELLGHASIASTQVYT 279 >gi|329890948|ref|ZP_08269291.1| phage integrase family protein [Brevundimonas diminuta ATCC 11568] gi|328846249|gb|EGF95813.1| phage integrase family protein [Brevundimonas diminuta ATCC 11568] Length = 304 Score = 94.3 bits (233), Expect = 2e-17, Method: Composition-based stats. Identities = 52/294 (17%), Positives = 94/294 (31%), Gaps = 34/294 (11%) Query: 70 TLKWLISEYRKS-AHWGSLAVNSRISF----ESYFDQIIRKSG----DFDYRKITTKHIR 120 T + ++ + + AH L+ + ++ Y + R G D +T R Sbjct: 2 TSQDALAAWLEHLAHERRLSPRTLEAYGHIGRLYLAFLERHRGGPQSAADLGSVTAAEAR 61 Query: 121 SGVESRK--HTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLS-VERPKRKTEGIRPW 174 + + R+ P +A Q L ++R + + + P L+ V PK K RP Sbjct: 62 AHLAERRSGDRPLNARSLSQTLAAIRGFHAF-LDRRLGVATPQLALVRGPKVKPSLPRPV 120 Query: 175 TKEDMQQFKSFWS--------EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT 226 +++ + E ++ R L GLR S++ T Sbjct: 121 SEDQAKGLLHEPEADPDMEPWEAARDRAVLTLLYGCGLRISEALSLKRSDAPLPESLRIT 180 Query: 227 QKTGTIITVELPDGFMKLLAM-------TPIGKETFFINNDKQKMNATQFSIWFKAKATK 279 K V + + + F ++A + + Sbjct: 181 GKGDKTRMVPVLPEVREATQAYLALQPFVIDADQALFRARRGGPLSARHVQATVQRLRGR 240 Query: 280 AGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 G+ SA H +R AT AGA + G ++ + YT D RL Sbjct: 241 LGLPASATPHALRHSFATHLLGAGADLRSIQELLGHASLSTTQKYT-QVDAARL 293 >gi|294677399|ref|YP_003578014.1| tyrosine recombinase XerD [Rhodobacter capsulatus SB 1003] gi|294476219|gb|ADE85607.1| tyrosine recombinase XerD [Rhodobacter capsulatus SB 1003] Length = 318 Score = 94.3 bits (233), Expect = 2e-17, Method: Composition-based stats. Identities = 35/196 (17%), Positives = 60/196 (30%), Gaps = 28/196 (14%) Query: 157 PCLSVERPKRKTEGIRPWTKEDMQQFKSF-------WSEGSQPRLAFEFLLYSGLRCSDS 209 P L + P + + + E+++ +E + R E L +G+R S+ Sbjct: 99 PTLQISGPGKAQRLPKTLSIEEVEALLEAGRDQGRSPAEQIRNRCLMELLYATGMRVSEL 158 Query: 210 CRAGVQHLQNN-IFSIKTQKTGTIITVELPDGFMKLLAM-----------------TPIG 251 V + N + K V L + LA P Sbjct: 159 VGLPVAAARGNPAMLMVRGKGDKERMVPLSAPAREALAAWLATRDAAEEAARIARRLPPS 218 Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATISADAGATAHELM 308 + F + + + F K A AG++ + H +R AT GA + Sbjct: 219 RFLFPSSGKEGHLTRQGFHALLKDIALAAGLDPARVTPHVLRHAFATHLLQGGADLRVIQ 278 Query: 309 ATYGWKTVDQAETYTK 324 G + E YT Sbjct: 279 TLLGHADLSTTEIYTH 294 >gi|256828693|ref|YP_003157421.1| integrase family protein [Desulfomicrobium baculatum DSM 4028] gi|256577869|gb|ACU89005.1| integrase family protein [Desulfomicrobium baculatum DSM 4028] Length = 687 Score = 94.3 bits (233), Expect = 2e-17, Method: Composition-based stats. Identities = 50/359 (13%), Positives = 99/359 (27%), Gaps = 89/359 (24%) Query: 54 STPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK 113 +E P + L + Y K A ++ +FE + I GD + Sbjct: 304 QAQTQEASMIPSEDNPCLSTIWESYLKE---RKPAPSTIKNFEGAVRRFIELVGDLPVKA 360 Query: 114 ITTKHIRSGVESRKHTP-----------------------------------SSAIQFLT 138 +T H R ++ P + ++L Sbjct: 361 VTKSHFRQYKDALLKFPVRLPHSVRKKSIQQVVAFVEKERQKGTAFELLNSKTINNKYLG 420 Query: 139 SMRVLFKWAVRQEYVAINPCLSV------ERPKRKTEGIRPWTKEDMQ------------ 180 +++ + AV ++ NP + ++ P+T+E++ Sbjct: 421 ALKAILAHAVDNGFIDDNPANQIRVTHDADKHGDNEPATLPYTEEELNVLFSSSFFVPGQ 480 Query: 181 --QFKSFWS-EGSQPRLAF-EFLLYSGLRCSDSCRAGVQHLQ------------NNIFSI 224 +FK + L++G R + + V + + Sbjct: 481 ECKFKKRMKRDAVLDYRWLPIVALFTGARLEEIGQLDVADVMEEDGVKFLFIHADQSTER 540 Query: 225 KTQKTGTIITVELPDGFMKL------LAMTPIGKETFFIN------NDKQKMNATQFSIW 272 + + + V + ++L + G F K K FS W Sbjct: 541 RLKNKSSRRKVPIHPRLVELGFLEFVKLRSKQGAIKLFSTLKEMGGARKDKRT-DAFSKW 599 Query: 273 FKAKATKAGVN----KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 ++ GV K+ H R S +AG A +G + Y + D Sbjct: 600 WRRYTEAIGVKTGKQKTFHSFRHTSKRALRNAGVDPSLTDAIHGHTNKSISAHYGRDKD 658 >gi|328545835|ref|YP_004305944.1| Site-specific recombinase, phage integrase family protein [Polymorphum gilvum SL003B-26A1] gi|326415575|gb|ADZ72638.1| Site-specific recombinase, phage integrase family protein [Polymorphum gilvum SL003B-26A1] Length = 316 Score = 94.3 bits (233), Expect = 2e-17, Method: Composition-based stats. Identities = 39/279 (13%), Positives = 87/279 (31%), Gaps = 30/279 (10%) Query: 82 AHWGSLAVNSRISFESYFDQIIRKS--------GDFDYRKITTKHIRSGVESRKHTPS-- 131 L+ + +++E Q +R G + R + R+ + R+ + Sbjct: 28 GDERRLSDKTLVAYERDVRQFLRFLTDHLGGTPGMAELRDLRPADFRAFLARRRRAGAQS 87 Query: 132 -SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF-------K 183 S + L +R + R+ V ++ P++ +P + D + + Sbjct: 88 RSLARGLAGIRSFLGFLERRGEVNAAAAGAIRPPRQPRSLPKPVSAADARAIVSGELAME 147 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRA-GVQHLQNNIFSIK-TQKTGTIITVELPDGF 241 + ++ L GLR +++ G + ++ K G V + Sbjct: 148 AEPWIEARNAAVLTLLYGCGLRLAEALSLTGRTAPRRGTKTLTIRGKGGKERIVPVLPVV 207 Query: 242 MKLLAM-------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKF 292 + + TP F+ +N + + + + + H +R Sbjct: 208 CEAVDAYLKLCPYTPEPDGPLFLGARGGPLNPRLVQLAMQKLRSALALPDSATPHALRHS 267 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 AT G + G ++ + YT D RL Sbjct: 268 FATHLLAGGGDLRTIQELLGHASLSTTQIYT-EVDTARL 305 >gi|325696149|gb|EGD38040.1| phage integrase family integrase/recombinase [Streptococcus sanguinis SK160] gi|328946727|gb|EGG40865.1| phage integrase family integrase/recombinase [Streptococcus sanguinis SK1087] Length = 328 Score = 94.3 bits (233), Expect = 2e-17, Method: Composition-based stats. Identities = 37/279 (13%), Positives = 88/279 (31%), Gaps = 15/279 (5%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE----SRKHT 129 L+ + + + S ++ + ++ R +TT +R+ + RK + Sbjct: 53 LLELFISAKRIEGCSEKSLKYYKIVIENMLTSL-KTAIRDLTTGDLRTYLAHYQQERKSS 111 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 + F W ++Y+ +P + + K ++ E ++ + E Sbjct: 112 KVTIDNMRRIFSSFFGWLEDEDYILKSPVRRIHKIKTDKTIKETFSDEGLELLRDACDE- 170 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG-----FMKL 244 + + L +G+R + R + + G + D + Sbjct: 171 IRDLAMIDLLASTGMRVGELVRLNREDINFYERECLVFGKGNSERIVYFDARTKIHLINY 230 Query: 245 LAMTPIGKETFFINND--KQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAG 301 L F++ ++ + KA +NK H R+ AT + D G Sbjct: 231 LDNRQDDNPALFVSLSFPYNRLLIGGVETRLRQIGEKADLNKVHPHKFRRTLATRAIDKG 290 Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340 ++ G +D Y ++ + + + I Sbjct: 291 MPIEQVQHLLGHVKIDTTMHYA-MVNQANVKNSHRKYIG 328 >gi|229092729|ref|ZP_04223874.1| Phage integrase [Bacillus cereus Rock3-42] gi|228690655|gb|EEL44433.1| Phage integrase [Bacillus cereus Rock3-42] Length = 387 Score = 94.3 bits (233), Expect = 2e-17, Method: Composition-based stats. Identities = 46/306 (15%), Positives = 106/306 (34%), Gaps = 43/306 (14%) Query: 67 KPTTLKWLISEYRKSAHWGSLAVNS----RISFESYFDQIIRKSGDFDYRKITTKHIRSG 122 PT+LK+ + ++ K ++ N+ + + E + + D + + ++ + Sbjct: 65 VPTSLKYFLEDWLKVYKENTVRKNTFILHKRNIEKHIIPYFKNINLKDLKPMMYQNFINH 124 Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSV---ERPKRKTEGIRPWTKEDM 179 + + ++ + +M AV + + NPC V + ++K EG++ ED+ Sbjct: 125 LTDQGYSKGTVKIIHRTMNNAMCKAVSLKKIGTNPCDDVVISNKNQKKEEGLKYMRTEDI 184 Query: 180 QQFKSFWSEGSQPRLAF-EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT--------- 229 +F + + F + L+ +G+R ++ + +I KT Sbjct: 185 PRFLKASYQYNYIYYIFFKTLINTGMRKGEAAALQWSDIDFKEQTINITKTLDFTAKDDE 244 Query: 230 ---------GTIITVELPDGFMKLL---------------AMTPIGKETFFINNDKQKMN 265 + T+ +P K L + F D + Sbjct: 245 ELFGDTKTFSSRRTIMIPAPLAKDLLNHKKWQNENKLVLQESYKHDLDLVFTKTDGNFLP 304 Query: 266 ATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYT 323 + F K + H +R A + ++GA + G K+++ Y+ Sbjct: 305 KSTLFNAFSRILKKVNIPSLDIHSLRHTHAVLLLESGANLKYIQERLGHKSIEMTSNVYS 364 Query: 324 KGADRI 329 +D+I Sbjct: 365 HISDKI 370 >gi|307693102|ref|ZP_07635339.1| integrase family protein [Ruminococcaceae bacterium D16] Length = 377 Score = 94.3 bits (233), Expect = 2e-17, Method: Composition-based stats. Identities = 60/357 (16%), Positives = 120/357 (33%), Gaps = 54/357 (15%) Query: 17 RHGKIIYYF-----RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT-- 69 RH +YY R +G+RI+ P +A G P+ P Sbjct: 16 RH---LYYVSMDLGRDENGKRIKQYRTF-----PTLAAARNGLKEFHATREQPQFVPAQE 67 Query: 70 -TLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRK 127 TL + + S + A + +++ D I GD K++ K ++ + + Sbjct: 68 MTLSQWLEYWMDSIVRPNRAETTVYAYQKIIDNHIDPALGDTPLTKLSAKQVQEYYTTTQ 127 Query: 128 HTPSSAIQFLT----SMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 + + + + + AVRQE + ++P VE P+ + + + +++Q Sbjct: 128 REANLSSNTMRRHHDLLSSALRSAVRQEMIPVSPMNRVEPPRPRPKETSFYDNLELKQLY 187 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI---------------FSIKTQK 228 +G L + G+R + C ++ K K Sbjct: 188 QLI-QGKPLELPVKLAGSLGMRREEICGLKWDNVDLQRRLVIIREARTAYGANIVQKETK 246 Query: 229 TGTII-TVELPDGF----------MKLLAMTPIGKE----TFFINNDKQKMNATQFSIWF 273 + T+ L D + L +++ ++ + S+ F Sbjct: 247 NRASVRTLYLADELCLLLEQEQSRQEALRCQDPDNFNPEGYVVLDHKQRPYSPNALSLAF 306 Query: 274 KAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADR 328 + + + + HG+R ATI++ GA+ ++ G T YT DR Sbjct: 307 TRFVRRNNLPRLTFHGLRHTFATIASCQGASLFDIGKALGHSTPSTTGRIYTHLVDR 363 >gi|77454861|ref|YP_345729.1| putative transposase [Rhodococcus erythropolis PR4] gi|77019861|dbj|BAE46237.1| putative transposase [Rhodococcus erythropolis PR4] Length = 611 Score = 94.3 bits (233), Expect = 2e-17, Method: Composition-based stats. Identities = 51/331 (15%), Positives = 104/331 (31%), Gaps = 38/331 (11%) Query: 25 FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP---TTLKWLISEYRKS 81 F +G G R P+P +A + P+ + + P T++ + + S Sbjct: 180 FHRGQGPR---PHP------RKRWAARS--VPEIGWDRAEECAPVMVATMRRYLDQIGIS 228 Query: 82 AHWGSLA--VNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTS 139 S+ + F + D + + ++ + +R + T+ Sbjct: 229 LRVSSVDCIETTLRQFAGHLATTSDVVCVADIDRTHIEAYKTWLAARPGYRKNTNLSKTT 288 Query: 140 MRVLFKW--AVRQEYVAIN----PCLSV----ERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 + + A Q + + P + +RP + R +F + Sbjct: 289 IGMRMGHLSAFYQRIIEWDYPDIPARAPVYSSDRPIKDKPLPRFLDDGAAAKFLTAARNL 348 Query: 190 SQP--RLAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVELPDGFMK 243 RLA E L +G+R + + + I K V L Sbjct: 349 PDEFGRLAIEMLSRTGMRKGELLDLTIDSVVQIGSAYWLRIPVGKLHNDRYVPLHPQLKT 408 Query: 244 LL-----AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATIS 297 ++ + + + T+ ++ A AG+ H +R AT + Sbjct: 409 MIDTWLEHRPDWQDSPLLFTDRGRPIPGTRIDKAVQSAAAAAGIGHVHPHQLRHTLATQA 468 Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGADR 328 + G + + A G KT++ Y + ADR Sbjct: 469 INRGMSLEAIAALLGHKTMEMTMVYARIADR 499 >gi|327441062|dbj|BAK17427.1| site-specific recombinase XerD [Solibacillus silvestris StLB046] Length = 299 Score = 94.3 bits (233), Expect = 2e-17, Method: Composition-based stats. Identities = 34/264 (12%), Positives = 89/264 (33%), Gaps = 25/264 (9%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV-------ESRKHTPSSAIQFL 137 + ++++ + S ++ +KI + +K +S + + Sbjct: 20 KNFSLHTVREYTSDLEEFFAFLHAEGIQKIAEVEYIHARLYVTKLYDEQKAR-TSISRKI 78 Query: 138 TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF----KSFWSEGSQPR 193 +S+R F++ R++ + P S+ PK++ + +E++++ + + Sbjct: 79 SSIRSFFRFLNREQNIDDAPFRSLYHPKKEERLPSFFYEEELKELFEKNEGDDPIQIRNM 138 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG-TIITVEL----PDGFMKLLA-- 246 E L +G+R S+ + + + ++ G + D ++ + Sbjct: 139 ALLELLYATGMRVSECVSLELTDIDFHYNIVRVMGKGRKERIIPFGQYAHDALIRYIKQV 198 Query: 247 ----MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADA 300 M + F+N ++ A ++ H +R AT + Sbjct: 199 RPTLMKKENHQKVFVNMRGGELTTRGVRYILSEMIDNASMHTKIYPHMLRHTFATHLLNN 258 Query: 301 GATAHELMATYGWKTVDQAETYTK 324 GA + G + + YT Sbjct: 259 GADMRTVQELLGHANLSSTQIYTH 282 >gi|298245229|ref|ZP_06969035.1| integrase family protein [Ktedonobacter racemifer DSM 44963] gi|297552710|gb|EFH86575.1| integrase family protein [Ktedonobacter racemifer DSM 44963] Length = 368 Score = 94.3 bits (233), Expect = 2e-17, Method: Composition-based stats. Identities = 56/367 (15%), Positives = 108/367 (29%), Gaps = 83/367 (22%) Query: 58 REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFES---YFDQIIRKSG------- 107 R + P ++ + ++ S + LA ++I + F G Sbjct: 5 RAIKRRDERAPISVSDAVKDFLASPNVKRLAHTTQIGYTLELVVFANWCDTHGLAQNPTS 64 Query: 108 ----------DFDYRKITTKHIRSGVESRK--HTPSSAIQ----------FLTSMRVLFK 145 +I + + ++ K H PS A + ++ Sbjct: 65 KEWHVVSGKGQISLDQINDRVMMLYLDDFKQTHRPSRADREEISTYTLSRVSRVIKTFLN 124 Query: 146 WAVRQE----YVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS------QPRLA 195 W V E YV +++PK + I +T E ++ + + R Sbjct: 125 WCVLDEQYSQYVLSISIQRIKKPKVEEVIIETFTIEQIEALFAACDREESEHLQVRDRAI 184 Query: 196 FEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTI--------------------- 232 LL SG+R + C + ++ + I+ G Sbjct: 185 LACLLDSGIRAHELCTLTIGNVCLDSKDAHIRVFGKGGKWGEVGLGEQARRAIQKYVRMF 244 Query: 233 ----ITVELPDGFMKL-------LAMTPIGKETFFINNDKQKMNATQFSIWFKA---KAT 278 I E+ + +L + +GK F+N + + + A Sbjct: 245 REPTIEYEIREQLQRLPARQAQQIKRQALGKALVFVNRSGKALTISGLYRMVDRLGSWAG 304 Query: 279 KAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRR 338 GV S H R A + G ++L +V E Y K + + + Sbjct: 305 IEGVRCSPHTFRHTMAAMFIRNGGNIYQLSKLLRHASVSTTEEYLKSLRQS----EARKG 360 Query: 339 ISSVVDS 345 SV+D+ Sbjct: 361 AKSVLDN 367 >gi|325679665|ref|ZP_08159240.1| site-specific recombinase, phage integrase family [Ruminococcus albus 8] gi|324108695|gb|EGC02936.1| site-specific recombinase, phage integrase family [Ruminococcus albus 8] Length = 362 Score = 94.3 bits (233), Expect = 2e-17, Method: Composition-based stats. Identities = 50/332 (15%), Positives = 106/332 (31%), Gaps = 40/332 (12%) Query: 22 IYYFRKG-----HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLIS 76 + R GRRI + +S Y + + E+ + T + L++ Sbjct: 13 RWECRISMGKDESGRRIFRSFYGKSREEAEYKAMIAQGQADEEFAVT----EMTFRELVT 68 Query: 77 EYRKSAHWGSLAVNSRISF-ESYFDQIIRKSGDFDYRKITTKHIRSGVESR---KHTPSS 132 E+ + ++ ++ +I G+ + K I + +E + + Sbjct: 69 EWL-HVTASRIKESTAANYAMKAEKHLIPAFGEIKCCLLKAKDIYAFIERKLKEGLSVRY 127 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-GSQ 191 + + +F++A +EY N + PK+ I KE + + + + S Sbjct: 128 LSDIMVLFKSVFRYA-SREYRIRNVLDGIVLPKKNKPEIAVMNKEQQLRLEKYLDKRPSV 186 Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII------------------ 233 + +Y GLR + C + + ++ KT + Sbjct: 187 TSMGISISMYMGLRIGEVCALQWKDIDLEKRTLTVSKTIQRVQCRTGARHTKLIITEPKS 246 Query: 234 -----TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAH 287 T+ +PD + +L E + ++ K+ + F A + H Sbjct: 247 ESSKRTIPIPDCLLPMLRQFKDNGEVYVVSGRKKPVEPRTMQYRFAKILHNANLPSFHYH 306 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQA 319 R AT + G L G +V+ Sbjct: 307 STRHLFATRCVELGFDVKTLSEILGHSSVEVT 338 >gi|323527812|ref|YP_004229965.1| integrase family protein [Burkholderia sp. CCGE1001] gi|323384814|gb|ADX56905.1| integrase family protein [Burkholderia sp. CCGE1001] Length = 358 Score = 94.3 bits (233), Expect = 2e-17, Method: Composition-based stats. Identities = 53/343 (15%), Positives = 102/343 (29%), Gaps = 45/343 (13%) Query: 14 ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPA---YMSALTGSTPKREYINSPRKKPTT 70 +R+R Y G + S A Y + PR T Sbjct: 5 KRSRSPNWYYRLTPPGGGSVVQGSTGTSNKEQAQELYDRLKVELWNQARLGVKPRY---T 61 Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS-GVESRKHT 129 + Y ++S + +++ + R I + + + RK T Sbjct: 62 WNDAVIRYVTDRE----GLSSLETSKTHLRWLDRHLSGVALAGIDRDRVDAIALAKRKET 117 Query: 130 P-----------------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172 + + + +R + AV ++ P +R K + +R Sbjct: 118 RVVRTKRGIVDTGQTVSLGTVRRVIGVLRAVLNAAVEWGWLDRAPVA--KRSKVVPKRVR 175 Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ----NNIFSIKTQK 228 T + ++ F L +GLR S+ + K Sbjct: 176 WLTPAEAERLLPELPGHLAEMARF--SLETGLRRSNVTGLQWSQVDLVRRIAWIHPDQAK 233 Query: 229 TGTIITVELPDGFMKLLAMTPIGK------ETFFINNDKQKMNATQFSIWFKAKATKAGV 282 ITV L + + +L K ++ F+ K + + ++ +AG+ Sbjct: 234 AKRAITVPLSETAVAVLRRQIAKKRAPEYVDSVFV--YKGRPVYQTVTAAWRKALKRAGI 291 Query: 283 -NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 N H +R A+ G H L GW+T++ + Y Sbjct: 292 CNFRWHDLRHTWASWHVQRGTPLHVLKELGGWETLEMVQRYAH 334 >gi|262378264|ref|ZP_06071421.1| conserved hypothetical protein [Acinetobacter radioresistens SH164] gi|262299549|gb|EEY87461.1| conserved hypothetical protein [Acinetobacter radioresistens SH164] Length = 339 Score = 94.3 bits (233), Expect = 2e-17, Method: Composition-based stats. Identities = 47/282 (16%), Positives = 89/282 (31%), Gaps = 20/282 (7%) Query: 51 LTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD 110 L+ ++ I K + L ++Y + + + D+I D Sbjct: 42 LSELRSGKKAIEQGEKPKYLFRDLCAKYYQEHGRHMRSARTINFKIKNLDRIAPNLADKS 101 Query: 111 YRKITTKHIRSGVESRKH--TPSSAIQFLTSMRVLFKWAVRQE-YVAINPCLSVERPKRK 167 I +RK ++ +F +A+++ + N SV P ++ Sbjct: 102 IYDFKPADIAEWRNNRKKEVKVATLRNEHAIYSAVFTYAMKELFLIESNVWHSVTMPGKE 161 Query: 168 TEGIRPWTKEDMQQFKSF--WSEGSQPRL-------AFEFLLYSGLRCSDSCRAGVQHLQ 218 + T+ED W + P + AF F L + +R + Q ++ Sbjct: 162 KSRSQRITEEDQALMLKSLSWDGTTTPEISRHYVAWAFLFALETAMRQGEILAMKRQDIK 221 Query: 219 NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKAT 278 + K G V L +LLA+ P N ++ +F + Sbjct: 222 EGFVHLPVTKNGDSRNVPLSKEAKRLLALLPK------TNKQLVPLDKDRFCATWMRAKK 275 Query: 279 KAGVNK-SAHGVRKFSATISADAGA-TAHELMATYGWKTVDQ 318 +AG+ + H R + T L G KT+ Sbjct: 276 RAGLPHINFHDSRHEAITRMVKVRKLPVEVLAKITGHKTISM 317 >gi|241992512|gb|ACS73592.1| IntI1 [uncultured bacterium] gi|241992515|gb|ACS73594.1| IntI1 [uncultured bacterium] gi|241992526|gb|ACS73602.1| IntI1 [uncultured bacterium] gi|241992530|gb|ACS73605.1| IntI1 [uncultured bacterium] gi|241992537|gb|ACS73610.1| IntI1 [uncultured bacterium] gi|241992541|gb|ACS73613.1| IntI1 [uncultured bacterium] gi|241992546|gb|ACS73616.1| IntI1 [uncultured bacterium] gi|241992555|gb|ACS73622.1| IntI1 [uncultured bacterium] gi|241992568|gb|ACS73632.1| IntI1 [uncultured bacterium] gi|241992575|gb|ACS73637.1| IntI1 [uncultured bacterium] gi|241992618|gb|ACS73667.1| IntI1 [uncultured bacterium] gi|241992621|gb|ACS73669.1| IntI1 [uncultured bacterium] gi|241992633|gb|ACS73677.1| IntI1 [uncultured bacterium] gi|241992638|gb|ACS73681.1| IntI1 [uncultured bacterium] gi|241992641|gb|ACS73683.1| IntI1 [uncultured bacterium] gi|241992644|gb|ACS73685.1| IntI1 [uncultured bacterium] Length = 315 Score = 94.3 bits (233), Expect = 2e-17, Method: Composition-based stats. Identities = 42/306 (13%), Positives = 93/306 (30%), Gaps = 62/306 (20%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHT 129 ++ + R+ + ++ + ++ + IR G + + + + + RK + Sbjct: 16 VLDQLRERIRYLHYSLRTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75 Query: 130 PSSAIQFLTSMRVLFK--WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 S+ Q L ++ + ++ + RP+ T +++ + F Sbjct: 76 VSTHRQALAALLFFYGKVLCTDLPWLQ-----EIGRPRPSRRLPVVLTPDEVVRILGFL- 129 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQKTGTIITVELPDGFMKLL 245 EG RL + L +G+R S+ + V+ + ++ K + LP+ L Sbjct: 130 EGEH-RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSL 188 Query: 246 AMTPIGKETFFINN---------------------------------------------D 260 +++ + Sbjct: 189 REQLSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVR 248 Query: 261 KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318 + M F FK +AG+ K + H +R AT +G + G V Sbjct: 249 RHHMYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVST 308 Query: 319 AETYTK 324 YT Sbjct: 309 TMIYTH 314 >gi|218695140|ref|YP_002402807.1| putative defective integrase; Qin prophage [Escherichia coli 55989] gi|218351872|emb|CAU97595.1| putative defective integrase; Qin prophage [Escherichia coli 55989] Length = 431 Score = 94.3 bits (233), Expect = 2e-17, Method: Composition-based stats. Identities = 45/317 (14%), Positives = 97/317 (30%), Gaps = 64/317 (20%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK-ITTKHIRSGVESR-- 126 T+K L ++ +A S ++ + I+ G+ + I + + + Sbjct: 85 TIKELAEKFLALKE-TEVAKTSLNTYRAVIKNILSIIGEKNLASSINKEKLLEVRKELLT 143 Query: 127 --------------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172 + + ++T++ +F++ V Y+A NP + K Sbjct: 144 GYQIPKSNYIVTQPGRSAVTVNNYMTNLNAVFQFGVDNGYLADNPFKGISPLKESRTIPD 203 Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIK----- 225 P ++E+ + Q + + +Y+G+R + C G + + N I+ Sbjct: 204 PLSREEFIRLIDAC-RNQQAKNLWCVSVYTGVRPGELCALGWEDIDLKNGTMMIRRNLAK 262 Query: 226 --------TQKTGTIITV--ELPDGFMKLLAMTPIGKETFF------------------- 256 T +I + D + +T + KE Sbjct: 263 DRFTVPKTQAGTNRVIHLIKPAIDALRSQMTLTRLSKEHIIDVHLREYGRTEKQKCTFVF 322 Query: 257 -------INNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELM 308 + N + A +AG+ ++ ++ R A S AGA + Sbjct: 323 QPEVSARVKNYGDHFTVDSIRQMWDAAIKRAGLRHRKSYQSRHTYACWSLTAGANPAFIA 382 Query: 309 ATYGWKTVDQA-ETYTK 324 G + Y K Sbjct: 383 NQMGHADAQMVFQVYGK 399 >gi|168698263|ref|ZP_02730540.1| Phage integrase [Gemmata obscuriglobus UQM 2246] Length = 349 Score = 94.3 bits (233), Expect = 2e-17, Method: Composition-based stats. Identities = 49/310 (15%), Positives = 104/310 (33%), Gaps = 40/310 (12%) Query: 59 EYINSPRKKPTTLKWLISEYRKS-AHWGSLAVN--SRISFESYFDQIIRKSGDF-----D 110 +N+P ++ ++ L S+ ++ + W + + + +R + +Q + +G + Sbjct: 29 PTLNTPDQRLPSVNDLRSQLAEAVSAWLTRSPSVETRSGYARDLNQFMAHAGIAVRAWDE 88 Query: 111 YRKITTKHIRSGVESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS--VERPK 165 + HI + + T ++ + L+ +R LF + Y NP + V P Sbjct: 89 LPHVRPGHIAAWRDQLLAAGLTNAAISRKLSVVRSLFGYLRAYGYEGPNPADTAFVAAPP 148 Query: 166 RKTEG-IRPWTKEDMQQFK----SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-- 218 +G T ED ++ + EG + R L ++G R + CR V + Sbjct: 149 VPRDGKTVALTPEDCRRLLDATSAQTPEGVRDRALLAVLAFTGCRVGELCRLRVGDYKTS 208 Query: 219 -NNIFSIKTQKTGTIITVELPDGFMKLLAM-----------TPIGKETFFINNDKQ---- 262 + K G V L + L P+ + + Sbjct: 209 GGHKVLEIRGKGGKERRVPLHPEAFERLDAWLETAGLQGATGPLFRPVRTARGGGREGFR 268 Query: 263 --KMNATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318 ++ + + ++ + H R + T + + GA +L G Sbjct: 269 AAPLSRRAVQVLVARYVRRLQLDPHVTVHSFRVTALTTARERGADIVDLQDFAGHADPRT 328 Query: 319 AETYTKGADR 328 Y + DR Sbjct: 329 TLGYIRNRDR 338 >gi|170020069|ref|YP_001725023.1| integrase family protein [Escherichia coli ATCC 8739] gi|169754997|gb|ACA77696.1| integrase family protein [Escherichia coli ATCC 8739] Length = 431 Score = 94.3 bits (233), Expect = 2e-17, Method: Composition-based stats. Identities = 45/317 (14%), Positives = 97/317 (30%), Gaps = 64/317 (20%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK-ITTKHIRSGVESR-- 126 T+K L ++ +A S ++ + I+ G+ + I + + + Sbjct: 85 TIKELAEKFLALKE-TEVAKTSLNTYRAVIKNILSIIGEKNLASSINKEKLLEVRKELLT 143 Query: 127 --------------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172 + + ++T++ +F++ V Y+A NP + K Sbjct: 144 GYQIPKSNYIVTQPGRSAVTVNNYMTNLNAVFQFGVDNGYLADNPFKGISPLKESRTIPD 203 Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIK----- 225 P ++E+ + Q + + +Y+G+R + C G + + N I+ Sbjct: 204 PLSREEFIRLIDAC-RNQQAKNLWCVSVYTGVRPGELCALGWEDIDLKNGTMMIRRNLAK 262 Query: 226 --------TQKTGTIITV--ELPDGFMKLLAMTPIGKETFF------------------- 256 T +I + D + +T + KE Sbjct: 263 DRFTVPKTQAGTNRVIHLIKPAIDALRSQMTLTRLSKEHIIDVHLREYGRTEKQKCTFVF 322 Query: 257 -------INNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELM 308 + N + A +AG+ ++ ++ R A S AGA + Sbjct: 323 QPEVSARVKNYGDHFTVDSIRQMWDAAIKRAGLRHRKSYQSRHTYACWSLTAGANPAFIA 382 Query: 309 ATYGWKTVDQA-ETYTK 324 G + Y K Sbjct: 383 NQMGHADAQMVFQVYGK 399 >gi|22536401|ref|NP_687252.1| phage integrase family site specific recombinase [Streptococcus agalactiae 2603V/R] gi|22533228|gb|AAM99124.1|AE014201_22 site-specific recombinase, phage integrase family [Streptococcus agalactiae 2603V/R] Length = 384 Score = 94.3 bits (233), Expect = 2e-17, Method: Composition-based stats. Identities = 59/361 (16%), Positives = 112/361 (31%), Gaps = 62/361 (17%) Query: 10 FVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMS--ALTGSTPKREYINSPRKK 67 ++ K+ R I FR + Y + ++ K E P K Sbjct: 22 YMVKDSQRADHIKRGFRTRKEAK-------------DYEARLIYLKASGKLEEFIKPTHK 68 Query: 68 PTTLKWLISEYRKSAHWGSLAVNSRISFESYF--DQIIRKSGDFDYRKITTKHIRSGVES 125 T + ++ + + + + S I+ GD KI+ ++ + Sbjct: 69 --TYNEIFEKWYQ--AYQDMVEPTTASRTLDMFRLHILPVMGDLPISKISPLDCQNFITD 124 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR-PWTKEDMQQFKS 184 + T + Q + +F +A++ + + NP + PKRK I WT +++Q+F + Sbjct: 125 KAKTFKNIKQIKSYTGKVFDFAIKMKLLKHNPMAEIIMPKRKKTRIENYWTVQELQEFLA 184 Query: 185 --FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ---------------NNIFSIKTQ 227 E + F L YSGLR + + + K Sbjct: 185 IVLQEEPYKHYALFRLLAYSGLRKGELYALKWADIDFQTETLSVDKSLGRLDGQAIEKGT 244 Query: 228 KTGTIIT-----------------VELPDGFMKLLAMTPIGKETFF--INNDKQ--KMNA 266 K + + + +A I ++ F ++A Sbjct: 245 KNDFSVRKIKLDSETISILQEWKSISQKEKAQLAVAPLSIEQDFLFTYCTRSGSIEPLHA 304 Query: 267 TQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324 + K G+ K S HG R AT+ + G G + +TY+ Sbjct: 305 DYINNVLSRIIRKHGLKKISPHGFRHTHATLMIEIGVDPVNTAKRLGHASSQMTLDTYSH 364 Query: 325 G 325 Sbjct: 365 S 365 >gi|295087392|emb|CBK68915.1| Site-specific recombinase XerD [Bacteroides xylanisolvens XB1A] Length = 382 Score = 94.3 bits (233), Expect = 2e-17, Method: Composition-based stats. Identities = 43/267 (16%), Positives = 90/267 (33%), Gaps = 27/267 (10%) Query: 85 GSLAVNSRISFESYFDQIIR------KSGDFDYRKITTKHIRSGVESRKHTP----SSAI 134 +A + +E+ D +++ + I K ++A Sbjct: 103 TDMAPATVQRYETSLKHTRDFVWETYHKKDVLLDEVSRQFIEDYEFWLKTEKKCCHNTAT 162 Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQ 191 ++L + + + + A+ + ++ +P L + R ++Q+ S SQ Sbjct: 163 KYLKNFKKIIRIALAKGWMKNDPFLEI-RFSLDKVEPDFLEDSEIQKLISKEIDIPRLSQ 221 Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNN-----IFSIKTQKTGTIITVELPDGFMKLLA 246 R F F ++GL SD +H+ + QKT + + L + +K+L Sbjct: 222 VRDIFVFCCFTGLAFSDIHGLRKEHIVEDSNGVRWIRKGRQKTKIMCNIPLMEIPLKILE 281 Query: 247 MTPIGKETFFINNDK---QKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADAG 301 + + + + + + K A G+ K+ H R AT + G Sbjct: 282 KYSTNE---YCKKHGVLFPVLCNQKMNAYLKELADICGIKKTLTTHVGRHTFATFALANG 338 Query: 302 ATAHELMATYGWKTVDQAETYTKGADR 328 + + G V Y + DR Sbjct: 339 VSIESVAKMLGHTNVQMTRHYARVLDR 365 >gi|257870041|ref|ZP_05649694.1| phage integrase [Enterococcus gallinarum EG2] gi|257804205|gb|EEV33027.1| phage integrase [Enterococcus gallinarum EG2] Length = 383 Score = 94.3 bits (233), Expect = 2e-17, Method: Composition-based stats. Identities = 46/315 (14%), Positives = 100/315 (31%), Gaps = 49/315 (15%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132 WL +Y+ + +L + + + II G KIT + ++ V Sbjct: 76 WL-EQYKNTVKASTLT-AQKFVLKKH---IIPHFGKIPINKITIPYCQAKVNHWFSYYKK 130 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE------GIRPWTKEDMQQFKSFW 186 + +F++A+ + NP V RPKR+ + ++++ + F Sbjct: 131 FNNLIMITSQIFQYAISVRLLTNNPMNGVIRPKRQMDIDQEDYAAPYYSQKQLITFLDKA 190 Query: 187 S--EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ---------------NNI-FSIKTQK 228 L F L ++GLR + + + + +T K Sbjct: 191 KKQLPFSEFLMFRILAFTGLRKGELHALRWKDISFGRGTLSVKQTVATADGWKLIFQTPK 250 Query: 229 TGTIIT-VELPDGFMKLLAMTPIGK---------------ETFFINNDKQKMNATQFSIW 272 T + + L D +KLL + + + F + + + + + Sbjct: 251 TRKSVRELSLDDETLKLLKRWKLQQKELFFKLGIKHDNEEQLLFTSEENKVLYLDFLNHR 310 Query: 273 FKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIR 330 + + HG R ++ ++G E+ G + Y D+ R Sbjct: 311 LTKILKDNNLEYMTVHGFRHTHCSLLLESGVPIKEVQERMGHTDIKTTMNVYAHVTDKKR 370 Query: 331 LGIKNSRRISSVVDS 345 + R + + + Sbjct: 371 --EETGNRFAQFMTN 383 >gi|325568652|ref|ZP_08144945.1| bacteriophage integrase [Enterococcus casseliflavus ATCC 12755] gi|325157690|gb|EGC69846.1| bacteriophage integrase [Enterococcus casseliflavus ATCC 12755] Length = 399 Score = 94.3 bits (233), Expect = 2e-17, Method: Composition-based stats. Identities = 46/323 (14%), Positives = 100/323 (30%), Gaps = 42/323 (13%) Query: 50 ALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF 109 AL + + + + T + + + + + A I + I+ G Sbjct: 46 ALARLQLESKEPDFITETTKTFEEVCNMWLEQYRNTVKASTYTIQKVAIDKHILPLFGHI 105 Query: 110 DYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169 KIT + + V + +F +A+ + NP V RPK++ + Sbjct: 106 RMSKITIQFCQKQVNHWFSYYKKYSNLIGITTSVFNYAINIRLLNNNPMDGVIRPKKQQK 165 Query: 170 GIR-----PWTK-EDMQQFKSFWSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQNNI 221 P+ E + F S E +L F L Y+GLR + + + + Sbjct: 166 VDEEDYIAPFYDREQLLTFLSVVKENYSEQLFVMFRILGYTGLRKGELHALRWKDIDFDK 225 Query: 222 FSIKTQKTGTIIT----VELPDGFMKLLAMTPIGKET----------------------- 254 ++ ++T + V P K + + ET Sbjct: 226 KTLTVKQTLATVQNWELVFQPPKTRKSIRTISLDNETLGLIKKWKLHQQKFLFQFGINSL 285 Query: 255 -----FFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELM 308 F + + + + + + + K + HG R ++ +AG + ++ Sbjct: 286 SQEQLLFPSTENKPLYLDYLNHNLSKILKENRLPKMTVHGFRHTHCSLLFEAGVSIKDVQ 345 Query: 309 ATYGWKTVDQAE-TYTKGADRIR 330 G + Y ++ + Sbjct: 346 ERMGHTDIKTTMNIYAHVTEQRK 368 >gi|325280655|ref|YP_004253197.1| integrase family protein [Odoribacter splanchnicus DSM 20712] gi|324312464|gb|ADY33017.1| integrase family protein [Odoribacter splanchnicus DSM 20712] Length = 405 Score = 94.3 bits (233), Expect = 2e-17, Method: Composition-based stats. Identities = 59/329 (17%), Positives = 116/329 (35%), Gaps = 52/329 (15%) Query: 43 FIPAYMS-ALTGST-PKREYINSPRKKPTTLKWLISEYRKSAHW------GSLAVNSRIS 94 F Y L G R +N + K T K L + +++ A + Sbjct: 77 FYQIYQDLELEGKIISARAIVNRYQGKDETFKTLYNVFKEHNDNCRKLIGTDYADITVRR 136 Query: 95 FESYFDQIIR------KSGDFDYRKITTKHIRSGVESRKH----TPSSAIQFLTSMRVLF 144 +++ ++ K D R++ + +R K ++ I+++ + + Sbjct: 137 YDNCLKYLMELVKRDYKIDDILLREVNGELVRKFDLYLKTEKHCAQNTVIRYMKCFKKVI 196 Query: 145 KWAVRQEYVAINPCLSVERPKR--------KTEGIRPWTKE-DMQQFKSFWSEGSQPRLA 195 A+ E++ NP ++ + ++E R W KE +++ + R Sbjct: 197 NLAIANEWLTKNPFAGIKFHEVEVNKQFLSQSEINRIWQKEFKIERLE-------LVRDV 249 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNN-----IFSIKTQKTGTIITVEL---PDGFMKLLAM 247 F F +Y+GL D +H+ + +KT + + L P ++ Sbjct: 250 FIFCVYTGLAFIDVYNLHPEHISEDGNGNLWIVKPREKTNNLCNIPLLSIPKQILEKYKD 309 Query: 248 TP--IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAG-A 302 P + K T QKMN+ + K A G+ K + H R A++ A A Sbjct: 310 NPYCMDKGTLLPVPCNQKMNS-----YLKEIADLCGIKKNLTTHTARHSFASVIALANNV 364 Query: 303 TAHELMATYGWKTVDQAETYTKGADRIRL 331 + + G + + Y K D+ L Sbjct: 365 SLPNVAKMLGHSSTRMTQHYAKVLDQTIL 393 >gi|254452140|ref|ZP_05065577.1| site-specific recombinase, phage integrase family protein [Octadecabacter antarcticus 238] gi|198266546|gb|EDY90816.1| site-specific recombinase, phage integrase family protein [Octadecabacter antarcticus 238] Length = 368 Score = 94.3 bits (233), Expect = 2e-17, Method: Composition-based stats. Identities = 47/322 (14%), Positives = 110/322 (34%), Gaps = 20/322 (6%) Query: 9 PFVTKERTRHGKIIYYFRK---GHGRRIRL-PYPHESTFIPAYMSALTGSTPKREYINSP 64 + + K +YF+K G +RI + +P S + R + Sbjct: 38 KGLVLFVGKRSKT-WYFQKDVGGQTKRILIGRFPIISAQAARQTALGFALEMGRGAGKAA 96 Query: 65 RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124 + TL+ + Y + +++ + ++ +I+ Sbjct: 97 QIGAPTLEATMEVYLARPKLR--SETNKVGMRAQLTLHLKDWMRLPLDEISKAMTVRRHH 154 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 +PS+A L S R ++ A R + P +++E + K +G + ++ Sbjct: 155 DMAGSPSAANHVLRSFRAIYNHARRTCDLPECPTMAIEWFEDKPDGRIIENLKHWRKTID 214 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244 R+ +E LL++GLR ++ + + + + K G + + ++ Sbjct: 215 DLPNPIH-RVFYELLLFTGLRKTEVFTLKWEQILEDRIHLPMTKNGRSFDLPISQLHHEI 273 Query: 245 LAMT-PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGAT 303 LA P+ + F ++ + + + H R+ AT++ +AG Sbjct: 274 LAPLRPLSSDWVF------PSPKSETGHITRPVR----LKYNPHMHRRTFATVAMEAGVL 323 Query: 304 AHELMATYGWKTVDQA-ETYTK 324 + + + YT+ Sbjct: 324 EEIVGRLLNHTPLSITGQRYTR 345 >gi|323947987|gb|EGB43981.1| phage integrase [Escherichia coli H120] Length = 426 Score = 94.3 bits (233), Expect = 2e-17, Method: Composition-based stats. Identities = 45/317 (14%), Positives = 97/317 (30%), Gaps = 64/317 (20%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK-ITTKHIRSGVESR-- 126 T+K L ++ +A S ++ + I+ G+ + I + + + Sbjct: 80 TIKELAEKFLALKE-TEVAKTSLNTYRAVIKNILSIIGEKNLASSINKEKLLEVRKELLT 138 Query: 127 --------------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172 + + ++T++ +F++ V Y+A NP + K Sbjct: 139 GYQIPKSNYIVTQPGRSAVTVNNYMTNLNAVFQFGVDNGYLADNPFKGISPLKESRTIPD 198 Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIK----- 225 P ++E+ + Q + + +Y+G+R + C G + + N I+ Sbjct: 199 PLSREEFIRLIDAC-RNQQAKNLWCVSVYTGVRPGELCALGWEDIDLKNGTMMIRRNLAK 257 Query: 226 --------TQKTGTIITV--ELPDGFMKLLAMTPIGKETFF------------------- 256 T +I + D + +T + KE Sbjct: 258 DRFTVPKTQAGTNRVIHLIKPAIDALRSQMTLTRLSKEHIIDVHLREYGRTEKHKCTFVF 317 Query: 257 -------INNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELM 308 + N + A +AG+ ++ ++ R A S AGA + Sbjct: 318 QPEVSARVKNYGDHFTVDSIRQMWDAAIKRAGLRHRKSYQSRHTYACWSLTAGANPAFIA 377 Query: 309 ATYGWKTVDQA-ETYTK 324 G + Y K Sbjct: 378 NQMGHADAQMVFQVYGK 394 >gi|309378134|emb|CBX23224.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 164 Score = 94.3 bits (233), Expect = 2e-17, Method: Composition-based stats. Identities = 24/151 (15%), Positives = 52/151 (34%), Gaps = 12/151 (7%) Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDG--------- 240 + + E + +GLR S++ ++ + I K V + Sbjct: 2 RDKALLELMYATGLRVSEAVGLNFGNVDLDRGCITALGKGDKQRMVPMGQESAYWVGRYY 61 Query: 241 -FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISA 298 + + + + F++ K ++ + K A++AG+ S H +R AT Sbjct: 62 TEARPVLLKGRSCDALFVSQKKTGISRQLAWMIVKEYASQAGIGHISPHSLRHAFATHLV 121 Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRI 329 G + G ++ + YT A+ Sbjct: 122 QHGLDLRVVQDMLGHADLNTTQIYTHIANVR 152 >gi|301326452|ref|ZP_07219804.1| site-specific recombinase, phage integrase family [Escherichia coli MS 78-1] gi|300846868|gb|EFK74628.1| site-specific recombinase, phage integrase family [Escherichia coli MS 78-1] gi|324019448|gb|EGB88667.1| site-specific recombinase, phage integrase family [Escherichia coli MS 117-3] Length = 431 Score = 94.3 bits (233), Expect = 2e-17, Method: Composition-based stats. Identities = 45/317 (14%), Positives = 97/317 (30%), Gaps = 64/317 (20%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK-ITTKHIRSGVESR-- 126 T+K L ++ +A S ++ + I+ G+ + I + + + Sbjct: 85 TIKELAEKFLALKE-TEVAKTSLNTYRAVIKNILSIIGEKNLASSINKEKLLEVRKELLT 143 Query: 127 --------------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172 + + ++T++ +F++ V Y+A NP + K Sbjct: 144 GYQIPKSNYIVTQPGRSAVTVNNYMTNLNAVFQFGVDNGYLADNPFKGISPLKESRTIPD 203 Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIK----- 225 P ++E+ + Q + + +Y+G+R + C G + + N I+ Sbjct: 204 PLSREEFIRLIDAC-RNQQAKNLWCVSVYTGVRPGELCALGWEDIDLKNGTMMIRRNLAK 262 Query: 226 --------TQKTGTIITV--ELPDGFMKLLAMTPIGKETFF------------------- 256 T +I + D + +T + KE Sbjct: 263 DRFTVPKTQAGTNRVIHLIKPAIDALRSQMTLTRLSKEHIIDVHLREYGRTEKHKCTFVF 322 Query: 257 -------INNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELM 308 + N + A +AG+ ++ ++ R A S AGA + Sbjct: 323 QPEVSARVKNYGDHFTVDSIRQMWDAAIKRAGLRHRKSYQSRHTYACWSLTAGANPAFIA 382 Query: 309 ATYGWKTVDQA-ETYTK 324 G + Y K Sbjct: 383 NQMGHADAQMVFQVYGK 399 >gi|301309916|ref|ZP_07215855.1| site-specific recombinase, phage integrase family [Bacteroides sp. 20_3] gi|300831490|gb|EFK62121.1| site-specific recombinase, phage integrase family [Bacteroides sp. 20_3] Length = 311 Score = 94.3 bits (233), Expect = 2e-17, Method: Composition-based stats. Identities = 48/284 (16%), Positives = 103/284 (36%), Gaps = 36/284 (12%) Query: 90 NSRISFESYFDQIIRKSG--DFDYRKITTKH---IRSGVESRKHTPSSAIQFLTSMRVLF 144 ++ S++ + G Y I +S + + + ++ ++ +R ++ Sbjct: 25 STAKSYQDALNSFKCFCGMEAIPYAYINRNRLLCYQSWLLDKGRSLNTVSTYMRRIRHIY 84 Query: 145 KWAVRQEYVAINP------CLSVERPKRKTEGIRPWTKEDMQQ-FKSFWSEGSQPRLAFE 197 AV P VE ++K +E +++ F + + S R+ Sbjct: 85 NLAVEANEAPFVPNLFKDVFTGVESKRKK-----ALPREMLERMFNAELEDPSLRRVQLT 139 Query: 198 FLL---YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL----AMTPI 250 L +SG+ D +++++ I QK+G++I +E+P G ++LL A T Sbjct: 140 VRLMFAFSGIAFVDLAHLKWENIRDGILQYHRQKSGSLIQLEIPSGALRLLDELSACTAK 199 Query: 251 GKETFFINNDKQKMNA----------TQFSIWFKAKATKAG--VNKSAHGVRKFSATISA 298 F + ++F+ K A G + +++ +R A+ Sbjct: 200 ESLYLFPFLSGTRTGEAAYKEYNRILSRFNHDLKLLARSTGVTLPVTSYTIRHSFASFLK 259 Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342 + + + G K++ + Y K RL N SV Sbjct: 260 EQDVSIEVISELLGHKSIKTTQIYLKSFSLERLSTVNRNCFESV 303 >gi|320182626|gb|EFW57515.1| Phage integrase [Shigella boydii ATCC 9905] Length = 358 Score = 94.3 bits (233), Expect = 3e-17, Method: Composition-based stats. Identities = 43/276 (15%), Positives = 88/276 (31%), Gaps = 26/276 (9%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--K 127 T+ I Y+ + N+ + + + I K G +ITT+HI ++ Sbjct: 75 TMADWIERYKTILIRRKASRNTYKTRVNQLETIKEKLGGVLLTEITTRHIAEFLDLWIEG 134 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK--RKTEGIRPWTKEDMQQFKSF 185 + A + + +F+ A+ + ++ NP PK E ++ T +++ Sbjct: 135 GKNTMAGSMRSVLSDMFREAIVEGRISQNPVTPTRAPKIVVTRERLKLKTYNCIREAADQ 194 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245 LA + L +G R D + ++ I+ KTG +I + L Sbjct: 195 LPAWFP--LAMDLALVTGQRREDITNMRFSDIYDDRLHIRQIKTGMMIAIPLSLSLPVAG 252 Query: 246 AMTP--------IGKETFFINNDKQKMN------ATQFSIWFKAKATKAGV-----NKSA 286 + + + I+ +K + + F A G+ + Sbjct: 253 LRLGAVVKQCRMVSRGDYLISAGIRKNSPDGSIHPDGLTKKFVAARKLTGILFSENPPTF 312 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 H +R A G + + Y Sbjct: 313 HEIR-SLAGRLYKEICGEEFAQRLLGHTSEKTTKMY 347 >gi|226306026|ref|YP_002765986.1| tyrosine recombinase XerC [Rhodococcus erythropolis PR4] gi|226185143|dbj|BAH33247.1| tyrosine recombinase XerC [Rhodococcus erythropolis PR4] Length = 310 Score = 94.3 bits (233), Expect = 3e-17, Method: Composition-based stats. Identities = 39/293 (13%), Positives = 94/293 (32%), Gaps = 30/293 (10%) Query: 68 PTTLKWLISEYRKSAHW-GSLAVNSRISF----ESYFDQIIRKSGDFDYRKITTKHIRSG 122 P +L + Y + + ++ ++ + S + D ++ +RS Sbjct: 8 PASLSVHLDAYAEHLRLSRGRSEHTIRAYVGDARALLTHFSAGSENADLDRLDLSVMRSW 67 Query: 123 VESRKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTK--- 176 + ++ ++ + +S R W + ++++P + P + + Sbjct: 68 LAAQNAVGTARTTVARRASSARGFTAWLAQTGRISVDPGTRLAAPPARRTLPTVLRQSQA 127 Query: 177 -EDMQQFKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTG 230 + M +S + RL E L +G+R + C V+ + + ++ K Sbjct: 128 LDAMDAAESGAQQQEPLALRDRLIVELLYSTGIRVGELCGLDVESVDADRRLLRVLGKGN 187 Query: 231 TIITVELPDGFMKLLAM----------TPIGKETFFINNDKQKMNATQFSIWFKA--KAT 278 +V L + + +++ Q A Sbjct: 188 KERSVPYGLPAESALNGWLEHGRPALSSDRSGRALLLGVRGGRLDQRQARSVVHETMAAI 247 Query: 279 KAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK-GADRIR 330 + HG+R +AT + GA + G ++ + YT +R+R Sbjct: 248 PGAPDMGPHGLRHSAATHLLEGGADLRVVQELLGHASLATTQLYTHVSVERLR 300 >gi|209919029|ref|YP_002293113.1| phage integrase [Escherichia coli SE11] gi|209912288|dbj|BAG77362.1| phage integrase [Escherichia coli SE11] Length = 325 Score = 94.3 bits (233), Expect = 3e-17, Method: Composition-based stats. Identities = 49/301 (16%), Positives = 98/301 (32%), Gaps = 12/301 (3%) Query: 28 GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRK-SAHWGS 86 G+RIR + +S + L NS ++P ++ LI + K Sbjct: 19 RKGKRIRKKFKTKSDAVLYERWVLAQQHNNEWKGNSIDRRPLSV--LIDLWWKYHGQLMK 76 Query: 87 LAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKW 146 N+R+ + + + T+ +R + PS+ + + ++ +F Sbjct: 77 SGHNTRLKLLRLSEAMDDPCVHKLNTTMLTE-LRVSRIEQGIQPSTINREIGALSAMFTA 135 Query: 147 AVRQEY-VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLR 205 + + + NP ++ K + +K + Q +E RLA E LL +G R Sbjct: 136 LISSGHFLNDNPVQGLKGMKVNEREMGYLSKSECVQLLDALAENPDERLAVEILLSTGAR 195 Query: 206 CSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMN 265 + + + + + K TV + + + + G + F D Sbjct: 196 WGEVAALEQRRVLHCRITFSKTKNSKNRTVPISESLFE--KIKKRGGKLVFPTLD----- 248 Query: 266 ATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 + K A ++ H +R A+ G L G + Y Sbjct: 249 YSLVRDVIKTVAPDVPDGQAVHALRHTFASHFMMNGGNILTLQKILGHAKIQTTMIYAHL 308 Query: 326 A 326 A Sbjct: 309 A 309 >gi|312887736|ref|ZP_07747325.1| integrase family protein [Mucilaginibacter paludis DSM 18603] gi|311299831|gb|EFQ76911.1| integrase family protein [Mucilaginibacter paludis DSM 18603] Length = 412 Score = 94.3 bits (233), Expect = 3e-17, Method: Composition-based stats. Identities = 58/310 (18%), Positives = 111/310 (35%), Gaps = 33/310 (10%) Query: 46 AYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISF---ESYFDQI 102 + L + + + ++ TTL WL++ Y + L + ++ E Y + Sbjct: 85 RFNKELVNAEAIKAKVEGIDEEQTTLLWLMN-YHNTEIKKLLEDGTMKNYFTTERYVKEF 143 Query: 103 I---RKSGDFDYRKITTKHI-------RSGVESRKHTPSSAIQFLT---SMRVLFKWAVR 149 + +K D ++ K + R + P + + +R + AV+ Sbjct: 144 LLKKKKRHDIYLSQLDYKFVVDFEIYLRQREPDKNQRPCANNTVMKHIERLRKMINIAVK 203 Query: 150 QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK--SFWSEGSQ-PRLAFEFLLYSGLRC 206 E++ +P L ER K + E+++ K +G + R F F Y+GL Sbjct: 204 NEWLIKDPFLRFER-KIVNKDREALELEEIENIKGVKLDKDGQRIVRDVFIFSCYTGLSF 262 Query: 207 SDSCRAGVQHL-----QNNIFSIKTQKT----GTIITVELPDGFMKLLAMTPIGKETFFI 257 +D C HL + KT G V L ++L+ + Sbjct: 263 ADMCLLNNNHLVTDIEGEKWIEMIRHKTANFSGKKFFVLLLPEAIELINRYRNHPMAGYT 322 Query: 258 NNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSAT-ISADAGATAHELMATYGWK 314 + + + KA A +A V+K + H R AT I+ + G + G Sbjct: 323 KTIFPVFSNQATNRYLKAIAKEAKVDKKLTFHIARHTFATTITLENGVPMETVSGMLGHA 382 Query: 315 TVDQAETYTK 324 ++ + Y+K Sbjct: 383 SLRTTQIYSK 392 >gi|302520688|ref|ZP_07273030.1| integrase [Streptomyces sp. SPB78] gi|302429583|gb|EFL01399.1| integrase [Streptomyces sp. SPB78] Length = 555 Score = 94.3 bits (233), Expect = 3e-17, Method: Composition-based stats. Identities = 45/313 (14%), Positives = 102/313 (32%), Gaps = 57/313 (18%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESRKH 128 TL+ ++ + ++ +++ N+ + + +I G K+ +H+ + + Sbjct: 44 TLETWLTHWVENIAAPNVSENTIDGYRVAVNHHLIPGLGAHRLEKLEPEHLERFYKKMQE 103 Query: 129 T---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 T +A Q ++R AVR+ ++ NP + P+ + + + P++ E++Q+ + Sbjct: 104 TGSAAGTAHQTHRTIRTCLNEAVRRGHLTRNPATIAKAPRLEEDEVEPYSVEEVQRLLAE 163 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI------------------------ 221 + L GLR + + + Sbjct: 164 AGKHRNAARWV-IALALGLRQGEVLGMQWTDVDFELGVIRVRRGRLRPRYEHGCGNRCGR 222 Query: 222 --------FSIKTQKTGT-----IITVELPDGFMKLLAMTP--------------IGKET 254 +++ + + +PD M LL KE Sbjct: 223 KPGFCPQKINVRRETKNVKSRAGQRPIGVPDELMTLLRRHKEEQGRERALARDLWTEKEY 282 Query: 255 FFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGW 313 F + + +N +K AGV + H R +AT+ G + + + GW Sbjct: 283 VFTSPVGEPLNPNTDFHRWKDLLKAAGVRDGRLHDARHTAATVLLILGISDAVVDSIMGW 342 Query: 314 KTVDQAETYTKGA 326 + A + Sbjct: 343 EPGKSARMRRRYQ 355 >gi|289423952|ref|ZP_06425745.1| phage integrase [Peptostreptococcus anaerobius 653-L] gi|289155729|gb|EFD04401.1| phage integrase [Peptostreptococcus anaerobius 653-L] Length = 343 Score = 94.3 bits (233), Expect = 3e-17, Method: Composition-based stats. Identities = 53/302 (17%), Positives = 100/302 (33%), Gaps = 36/302 (11%) Query: 67 KPTTLKWLISEY--RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124 K TLK EY S V ++ + + I + I+ K I + Sbjct: 52 KDITLKQAKEEYFDYISTRLRESTVRNKRWYAKNLEYI----EHINLLNISPKTILDWQK 107 Query: 125 SRKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 + + + Q + +FK + NP ++E+ + + + WT ++ Sbjct: 108 HMQDIGKSNKTINQSTEVLYGIFKHNCKMYSNTHNPVKAIEKLPTEKKEMDYWTLDEFNT 167 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ-----------KTG 230 F F + + LAF+ L Y G+R + + + + I K Sbjct: 168 FLGFVEDPEKS-LAFKILFYGGIRYGELLGLQIGDIYDTYIDINKSYDYRSKKFCPTKNK 226 Query: 231 TIIT-VELPDGFMKLLAM------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN 283 + V +PD M + P K+ F K T S K K ++ Sbjct: 227 QSVRQVVMPDKIMDDIRAYISTLYKPGKKDRLF-----SKTTNTWLSRQLKVTCEKYNLH 281 Query: 284 K-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK-GADRIRLGIKNSRRIS 340 K H +R AT+ + G + G TY+ +R + +++ Sbjct: 282 KIRVHDLRHSHATLLINNGIDVLIISHRLGHSNPTTTLNTYSHLYKNRSTEAVDLLNKLA 341 Query: 341 SV 342 ++ Sbjct: 342 NL 343 >gi|257093399|ref|YP_003167040.1| integrase family protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257045923|gb|ACV35111.1| integrase family protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 305 Score = 94.3 bits (233), Expect = 3e-17, Method: Composition-based stats. Identities = 52/284 (18%), Positives = 91/284 (32%), Gaps = 26/284 (9%) Query: 79 RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT--PSSAIQF 136 K L + ++ ++ D ++ + + T SS Sbjct: 20 LKHLKLKGLQPKTIEAYSRAIRRVGDYF-DHQIGDLSEADLVDYFTDLRETHSWSSVKLD 78 Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF 196 L ++ ++ +++ +V S+ +P R T E+ ++ S R+ F Sbjct: 79 LYGLKFHYEHVLKKPWV----APSLIKPPRSQRLPDIVTVEETERIFLATQVLSY-RVFF 133 Query: 197 EFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQKTGTIITVELPDGFMKLLAM---TPIG 251 L GLR + R V + I+ K V LP +LL Sbjct: 134 FTLYSLGLRLGEGLRLTVGDIDGACERVHIRDAKGNKDRLVPLPTATHQLLRRFWQRHRN 193 Query: 252 KETFFINNDKQ---------KMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADA 300 F N ++ +A GV K S H +R AT +A Sbjct: 194 PVLLFPNRHGGLAGARAARTPLDRGGVQKALRAVVESCGVKKHISPHSLRHAYATHLVEA 253 Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVD 344 G E+ G ++ YT DR R RI++++D Sbjct: 254 GVELTEVQDILGHHSILTTVRYTHLTDRSR--HHAIDRINALMD 295 >gi|241992627|gb|ACS73673.1| IntI1 [uncultured bacterium] Length = 315 Score = 94.3 bits (233), Expect = 3e-17, Method: Composition-based stats. Identities = 42/306 (13%), Positives = 93/306 (30%), Gaps = 62/306 (20%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHT 129 ++ + R+ + ++ + ++ + IR G + + + + + RK + Sbjct: 16 VLDQLRERIRYLHYSLRTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75 Query: 130 PSSAIQFLTSMRVLFK--WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 S+ Q L ++ + ++ + RP+ T +++ + F Sbjct: 76 VSTHRQALAALLFFYGKVLCADLPWLQ-----EIGRPRPSRRLPVVLTPDEVVRILGFL- 129 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQH--LQNNIFSIKTQKTGTIITVELPDGFMKLL 245 EG RL + L +G+R S+ + V+ + ++ K + LP+ L Sbjct: 130 EGEH-RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSL 188 Query: 246 AMTPIGKETFFINN---------------------------------------------D 260 +++ + Sbjct: 189 REQLSRARAWWLKDQAEGRSGVALPDTLERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVR 248 Query: 261 KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318 + M F FK +AG+ K + H +R AT +G + G V Sbjct: 249 RHHMYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVST 308 Query: 319 AETYTK 324 YT Sbjct: 309 TMIYTH 314 >gi|213968068|ref|ZP_03396213.1| site-specific recombinase, phage integrase family [Pseudomonas syringae pv. tomato T1] gi|301385270|ref|ZP_07233688.1| phage integrase family site specific recombinase [Pseudomonas syringae pv. tomato Max13] gi|213927048|gb|EEB60598.1| site-specific recombinase, phage integrase family [Pseudomonas syringae pv. tomato T1] Length = 367 Score = 94.3 bits (233), Expect = 3e-17, Method: Composition-based stats. Identities = 53/348 (15%), Positives = 109/348 (31%), Gaps = 37/348 (10%) Query: 7 LPPFVTKERT-RHGKIIYYFRKGHGRRI----RLPYPHESTFIPAYMSALTGSTPKREYI 61 LPP + ++ R+G Y +R R+ + + A + + T + Sbjct: 13 LPPNLYRKTDKRNGHTYYTYRDPVTGRMFGLGKDKAAAIMEAVAANHADVLKPTLRERLA 72 Query: 62 NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121 ++ T + EY L+ ++ S +S + G R I T I + Sbjct: 73 EPIAEQDRTFADWLVEYDLIYPERGLSSHTTRSIKSRLKALKDAFGSRYLRSIRTMDIAT 132 Query: 122 GVES--RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179 + + + + + +R +F A+ + +NP + + + K + R + E Sbjct: 133 FLATFTKAGKAPMSKALRSLLRDVFTEAIAAGWCDLNPVDATKAARSKVKRSR-LSLELW 191 Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPD 239 + + R A E L +G R D + + + KTG + + Sbjct: 192 KAAHAATDRPWLKR-AMELALLTGQRRDDIASMLFKDEYDGFLHVVQSKTGARLRISTAL 250 Query: 240 GFMKLLAMTPI----------------GKETFFINNDKQKMNATQFSIWFKAK----ATK 279 + T + + T ++ F A Sbjct: 251 RLEAIDLDLSSVVRMCRDRVLSKHLVHHTRTVAVAKAGSPIKLTTLTLAFAQARDKGAAA 310 Query: 280 AGVNK-----SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 G++ S H +R +A + + G +L G + E Y Sbjct: 311 LGIDLGENPPSFHEMRSLAARLHSAEGRDPQKL---LGHRNAAMTEMY 355 >gi|150390297|ref|YP_001320346.1| phage integrase family protein [Alkaliphilus metalliredigens QYMF] gi|149950159|gb|ABR48687.1| phage integrase family protein [Alkaliphilus metalliredigens QYMF] Length = 372 Score = 94.3 bits (233), Expect = 3e-17, Method: Composition-based stats. Identities = 41/287 (14%), Positives = 86/287 (29%), Gaps = 46/287 (16%) Query: 91 SRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQ 150 + Y + I + +E+ + + +S+ VLFK+ R Sbjct: 95 TAKDINRYLGDFCSRY------SIEKEESIKIMENHN---RALARKKSSLAVLFKFLYRD 145 Query: 151 EYVAINPCLS---VERPKRKTEGIRPWTKEDMQQFKSFWSEG---------------SQP 192 + N + PK + + I+ +++ + G + Sbjct: 146 GLIKQNISDGLNPIRLPKPQPDAIKRLEIDEVARMIDCVDLGEAFTEKEKTYWQKTKLRD 205 Query: 193 RLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELP------------D 239 + L GLR S+ + + N K +K G + + + Sbjct: 206 KAILMLFLTYGLRLSELEQLNISSFNFNRGEFKIYRKRGKETAMPINRTCETVIKEYMAN 265 Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATK-----AGVNKSAHGVRKFSA 294 + A+ K+ F++ +++M K A S H +R +A Sbjct: 266 ERPQSSALDEEHKDALFLSLQRKRMTTRAIRNMVKKYTALVLDTTAKNGYSPHKLRATAA 325 Query: 295 TISADAGATAHELMATYGWKTVDQAETY-TKGADRIRLGIKNSRRIS 340 T G + +++ V + Y D R +KN + Sbjct: 326 TSLIQQGFSIYDVQNLLDHDDVTTTQLYAAHKKDVKRQIVKNFEWLD 372 >gi|298384323|ref|ZP_06993883.1| mobilizable transposon, int protein [Bacteroides sp. 1_1_14] gi|298262602|gb|EFI05466.1| mobilizable transposon, int protein [Bacteroides sp. 1_1_14] Length = 347 Score = 94.3 bits (233), Expect = 3e-17, Method: Composition-based stats. Identities = 48/244 (19%), Positives = 89/244 (36%), Gaps = 20/244 (8%) Query: 105 KSGDFDY---RKITTKHIRSGVESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPC 158 GD + +K + + + P +SA + ++ R L K A R ++ N Sbjct: 106 TFGDVNVDLCKKFREYLLNAKQLKHSNRPISLNSASGYYSTFRGLLKIAYRDKWFRENIN 165 Query: 159 LSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL- 217 +++ + + T +++Q + + + A F +GLR SD + Sbjct: 166 DYLDKIEPQDVKKEYLTLNEVKQLAATPCDIPVLKAASLFACLTGLRISDILNLQWEDFT 225 Query: 218 ----QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWF 273 Q I+TQKT T T+ + + L TP + F + + + + Sbjct: 226 IAPDQGYCLRIRTQKTQTEATLPISYEAYE-LCGTPGTGKVF------KDLKRSMINYPL 278 Query: 274 KAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 K+ KAG+ K + HG R A I G + + K V + Y + + Sbjct: 279 KSWLKKAGITKPITFHGFRHSYAVIQISLGTDIYTVSKMLTHKNVSTTQIYADLVNSKKR 338 Query: 332 GIKN 335 N Sbjct: 339 ETAN 342 >gi|253563508|ref|ZP_04840965.1| mobilizable transposon [Bacteroides sp. 3_2_5] gi|251947284|gb|EES87566.1| mobilizable transposon [Bacteroides sp. 3_2_5] Length = 347 Score = 94.3 bits (233), Expect = 3e-17, Method: Composition-based stats. Identities = 48/244 (19%), Positives = 89/244 (36%), Gaps = 20/244 (8%) Query: 105 KSGDFDY---RKITTKHIRSGVESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPC 158 GD + +K + + + P +SA + ++ R L K A R ++ N Sbjct: 106 TFGDVNVDLCKKFREYLLNAKQLKHSNRPMSLNSASGYYSTFRGLLKIAYRDKWFRENIN 165 Query: 159 LSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL- 217 +++ + + T +++Q + + + A F +GLR SD + Sbjct: 166 DYLDKIEPQDVKKEYLTLNEVKQLAATPCDIPVLKAASLFACLTGLRISDILNLQWEDFT 225 Query: 218 ----QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWF 273 Q I+TQKT T T+ + + L TP + F + + + + Sbjct: 226 IAPDQGYCLRIRTQKTQTEATLPISYEAYE-LCGTPGTGKVF------KDLKRSMINYPL 278 Query: 274 KAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 K+ KAG+ K + HG R A I G + + K V + Y + + Sbjct: 279 KSWLKKAGITKPITFHGFRHSYAVIQISLGTDIYTVSKMLTHKNVSTTQIYADLVNSKKR 338 Query: 332 GIKN 335 N Sbjct: 339 ETAN 342 >gi|268589662|ref|ZP_06123883.1| site-specific recombinase, phage integrase family [Providencia rettgeri DSM 1131] gi|291314972|gb|EFE55425.1| site-specific recombinase, phage integrase family [Providencia rettgeri DSM 1131] Length = 328 Score = 94.3 bits (233), Expect = 3e-17, Method: Composition-based stats. Identities = 58/305 (19%), Positives = 105/305 (34%), Gaps = 20/305 (6%) Query: 26 RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWG 85 R+G R R HE+ Y AL+ K S +P L+ LI + + +G Sbjct: 20 RQGKRVRRRFDTKHEAVLFERY--ALSNKMHKDWLDKSNDIRP--LQDLIDLWWNT--FG 73 Query: 86 SLAVNSRISFESYFDQIIRKSGDFDYRKITTKH---IRSGVESRKHTPSSAIQFLTSMRV 142 + ++ + +I + +T K R + PS+ + +++ Sbjct: 74 KSSEYAQDTLLRA-TRIATALDNPPMCLLTDKQLALYRELRLAAGIKPSTINRDFSAISG 132 Query: 143 LFKWAVRQEY-VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY 201 +F R + + +P + R K+K + T E++ + G ++A L Sbjct: 133 IFTALKRTDLFMGKHPIRGLSRLKQKATEMSYLTHEEIGLLLNILK-GDNKKVAI-LCLS 190 Query: 202 SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDK 261 +G R ++ + +H+ N KTG V + + G F N Sbjct: 191 TGARWGEAVKLKREHVIQNKIRFTFTKTGKARIVPISQEVADKVCTRKSG--LLFPNT-- 246 Query: 262 QKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321 + F K ++ H +R AT G + L G T+ Q T Sbjct: 247 ---SYDMFRKHIKTIKPDMPQGQATHALRHTFATHFMMNGGSIITLQRILGHSTLQQTLT 303 Query: 322 YTKGA 326 Y A Sbjct: 304 YAHFA 308 >gi|85059065|ref|YP_454767.1| putative phage integrase [Sodalis glossinidius str. 'morsitans'] gi|84779585|dbj|BAE74362.1| putative phage integrase [Sodalis glossinidius str. 'morsitans'] Length = 256 Score = 94.3 bits (233), Expect = 3e-17, Method: Composition-based stats. Identities = 43/230 (18%), Positives = 83/230 (36%), Gaps = 10/230 (4%) Query: 7 LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMS--ALTGSTPKREYINS- 63 LPP + R+G I Y G+ L A + A+ GS+ + ++S Sbjct: 12 LPPNLQ---PRNGGYICYRDPRTGKEYGLGCNRREAITQAIAANMAIYGSSKQSPLVDSI 68 Query: 64 PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV 123 + TT+ + Y + L + + Y + G F +K+ TK I + Sbjct: 69 SGTQATTVNEWTTRYLEILESRKLKPKTMSEYNKYLKAVNAYLGKFAIQKVETKDIADFL 128 Query: 124 E--SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 ++ + A +R LF+ A+ + + NP + + + R T + + Sbjct: 129 YQWAKAGKVTMANCIRALLRDLFREAIAEGLLKSNPAEATRNQRIDIQRERI-TLDAWKL 187 Query: 182 FKSFWS-EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG 230 + + + L +G R D + +++ IK KTG Sbjct: 188 IRKAADTLPAWVGPCLDLALVTGQRLGDIQALRWEDIKDGRLYIKQAKTG 237 >gi|315291911|gb|EFU51263.1| site-specific recombinase, phage integrase family [Escherichia coli MS 153-1] Length = 431 Score = 94.3 bits (233), Expect = 3e-17, Method: Composition-based stats. Identities = 45/317 (14%), Positives = 97/317 (30%), Gaps = 64/317 (20%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK-ITTKHIRSGVESR-- 126 T+K L ++ +A S ++ + I+ G+ + I + + + Sbjct: 85 TIKELAEKFLALKE-TEVAKTSLNTYRAVIKNILSIIGEKNLASSINKEKLLEVRKELLT 143 Query: 127 --------------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172 + + ++T++ +F++ V Y+A NP + K Sbjct: 144 GYQIPKSNYIVTQPGRSAVTVNNYMTNLNAVFQFGVDNGYLADNPFKGISPLKESRTIPD 203 Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIK----- 225 P ++E+ + Q + + +Y+G+R + C G + + N I+ Sbjct: 204 PLSREEFIRLIDAC-RNQQAKNLWCVSVYTGVRPGELCALGWEDIDLKNGTMMIRRNLAK 262 Query: 226 --------TQKTGTIITV--ELPDGFMKLLAMTPIGKETFF------------------- 256 T +I + D + +T + KE Sbjct: 263 DRFTVPKTQAGTNRVIHLIKPAIDALRSQMTLTRLSKEHIIDVHLREYGRTEKHKCTFVF 322 Query: 257 -------INNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELM 308 + N + A +AG+ ++ ++ R A S AGA + Sbjct: 323 QPEVSARVKNYGDHFTVDSIRQMWDAAIKRAGLRHRKSYQSRHTYACWSLTAGANPAFIA 382 Query: 309 ATYGWKTVDQA-ETYTK 324 G + Y K Sbjct: 383 NQMGHADAQMVFQVYGK 399 >gi|301309511|ref|ZP_07215453.1| tyrosine type site-specific recombinase [Bacteroides sp. 20_3] gi|300832600|gb|EFK63228.1| tyrosine type site-specific recombinase [Bacteroides sp. 20_3] Length = 418 Score = 94.3 bits (233), Expect = 3e-17, Method: Composition-based stats. Identities = 33/208 (15%), Positives = 71/208 (34%), Gaps = 11/208 (5%) Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 + ++A + + + K A Y+ ++ V+ + + T +++ + + Sbjct: 201 SQNTASTYFSIFKAALKQAFIDGYLTVDIGAKVKGIQGQESRREYLTIDELNRLAQTPCD 260 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ----NNIFSIKTQKTGTIITVELPDGFMKL 244 R A L +GLR D + ++ + + QKT + + + + +L Sbjct: 261 PLLKRAALFSAL-TGLRHCDIQKLKWSEIEVFNGSYRLNFTQQKTKGVEYMPISEQAFQL 319 Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302 G++ F K +AG+ K + H R AT+ G Sbjct: 320 CGERKDGEQLVFAGLPDPSWINRP----IKKWVVEAGITKHITYHCFRHSYATLQLAGGT 375 Query: 303 TAHELMATYGWKTVDQAETYTKGADRIR 330 + + G V + Y K D + Sbjct: 376 DIYTVSKMLGHTNVRTTQVYAKVVDAKK 403 >gi|241992647|gb|ACS73687.1| IntI1 [uncultured bacterium] Length = 315 Score = 94.3 bits (233), Expect = 3e-17, Method: Composition-based stats. Identities = 42/306 (13%), Positives = 93/306 (30%), Gaps = 62/306 (20%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHT 129 ++ + R+ + ++ + ++ + IR G + + + + + RK + Sbjct: 16 VLDQLRERIRYLHYSLRTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75 Query: 130 PSSAIQFLTSMRVLFK--WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 S+ Q L ++ + ++ + RP+ T +++ + F Sbjct: 76 VSTHRQALAALLFFYGKVLCTDLPWLQ-----EIGRPRPSRRLPVVLTPDEVVRILGFL- 129 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQKTGTIITVELPDGFMKLL 245 EG RL + L +G+R S+ + V+ + ++ K + LP+ L Sbjct: 130 EGEH-RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSL 188 Query: 246 AMTPIGKETFFINN---------------------------------------------D 260 +++ + Sbjct: 189 REQLPRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVR 248 Query: 261 KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318 + M F FK +AG+ K + H +R AT +G + G V Sbjct: 249 RHHMYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVST 308 Query: 319 AETYTK 324 YT Sbjct: 309 TMIYTH 314 >gi|218705077|ref|YP_002412596.1| putative defective integrase; Qin prophage [Escherichia coli UMN026] gi|293405080|ref|ZP_06649072.1| int protein [Escherichia coli FVEC1412] gi|298380726|ref|ZP_06990325.1| lambdoid prophage Qin defective integrase [Escherichia coli FVEC1302] gi|300901630|ref|ZP_07119692.1| site-specific recombinase, phage integrase family [Escherichia coli MS 198-1] gi|218432174|emb|CAR13062.1| putative defective integrase; Qin prophage [Escherichia coli UMN026] gi|291427288|gb|EFF00315.1| int protein [Escherichia coli FVEC1412] gi|298278168|gb|EFI19682.1| lambdoid prophage Qin defective integrase [Escherichia coli FVEC1302] gi|300354991|gb|EFJ70861.1| site-specific recombinase, phage integrase family [Escherichia coli MS 198-1] Length = 431 Score = 94.3 bits (233), Expect = 3e-17, Method: Composition-based stats. Identities = 44/317 (13%), Positives = 96/317 (30%), Gaps = 64/317 (20%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK-ITTKHIRSGVESR-- 126 T+K L ++ +A S ++ + I+ G+ + I + + + Sbjct: 85 TIKELAEKFLALKE-TEVAKTSLNTYRAVIKNILSIIGEKNLASSINKEKLLEVRKELLT 143 Query: 127 --------------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172 + + ++T++ +F++ V Y+ NP + K Sbjct: 144 GYQIPKSNYIVTQPGRSAVTVNNYMTNLNAVFQFGVDNGYLVDNPFKGISPLKESRTIPD 203 Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIK----- 225 P ++E+ + Q + + +Y+G+R + C G + + N I+ Sbjct: 204 PLSREEFIRLIDAC-RNQQAKNLWCVSVYTGVRPGELCALGWEDIDLKNGTMMIRRNLAK 262 Query: 226 --------TQKTGTIITV--ELPDGFMKLLAMTPIGKETFF------------------- 256 T +I + D + +T + KE Sbjct: 263 DRFTVPKTQAGTNRVIHLIKPAIDALRSQMTLTRLSKEHIIDVHLREYGRTEKQKCTFVF 322 Query: 257 -------INNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELM 308 + N + A +AG+ ++ ++ R A S AGA + Sbjct: 323 QPEVSARVKNYGDHFTVDSIRQMWDAAIKRAGLRHRKSYQSRHTYACWSLTAGANPAFIA 382 Query: 309 ATYGWKTVDQA-ETYTK 324 G + Y K Sbjct: 383 NQMGHADAQMVFQVYGK 399 >gi|84390124|ref|ZP_00991386.1| Phage integrase [Vibrio splendidus 12B01] gi|84376778|gb|EAP93653.1| Phage integrase [Vibrio splendidus 12B01] Length = 444 Score = 94.3 bits (233), Expect = 3e-17, Method: Composition-based stats. Identities = 53/309 (17%), Positives = 103/309 (33%), Gaps = 41/309 (13%) Query: 54 STPKREYINSPRKKPTTLKWLISEYRKSAHWGSL------------AVNSRISFESYFDQ 101 +R+ + + R TLK +I Y ++ L A + + + Sbjct: 100 EQERRKLLKTERVNSITLKDVIDHYLENYIQDRLTSSGGVISGARKAKGQKEVRRTLYVD 159 Query: 102 IIRKSGDFDYRKITTKHI---RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVA---I 155 I+ GD ++ I G+ R P A L + +++A+ +Y+ + Sbjct: 160 IVALLGDRSVMEVGKSDITYLIQGIIDRGA-PVQAGSVLRELSSAYEYAIGMDYLPENFV 218 Query: 156 NPCL-SVERPKRKT------EGIRPWTKEDMQQFKSFWSEGS---QPRLAFEFLLYSGLR 205 NP L ++ + K+ +G R ++ +F + S R L++G R Sbjct: 219 NPALLAINKFKKSKVKLTNNKGKRVLDHSELSRFIKWLPNSSFSKNIRGILRMTLWTGCR 278 Query: 206 CSDSCRAGVQ--HLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKET------FFI 257 + C Q N + K G V+LP ++ L K F Sbjct: 279 TGEVCDLEWQQIDFDKNTIYLTETKNGNSRYVQLPSQAVQWLRKWKEVKSYPQSIYVFST 338 Query: 258 NNDKQKMNATQFSIW-FKAKATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGW 313 + + Q + + ++ + ++ + H +R+ T A G A G Sbjct: 339 SKGGSHVVQKQLTQYTWRMRRDGLMIDMPLWTPHDLRRTVRTELARMGCPTGVAEAVLGH 398 Query: 314 KTVDQAETY 322 TY Sbjct: 399 SVKGIEGTY 407 >gi|330898871|gb|EGH30290.1| Phage integrase [Pseudomonas syringae pv. japonica str. M301072PT] Length = 215 Score = 94.3 bits (233), Expect = 3e-17, Method: Composition-based stats. Identities = 43/197 (21%), Positives = 73/197 (37%), Gaps = 24/197 (12%) Query: 156 NPCLSVERPKRKT-EGIRPWTKED-----MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDS 209 NP V+RPK ++ EG P + + +G + R LLY GLR ++ Sbjct: 8 NPVHGVKRPKIESNEGKTPALGDHQAKALLDAPDESTLKGLRDRAMLAVLLYHGLRREEA 67 Query: 210 CRAGVQHL--QNNIFSIKT-QKTGTIITVELPDG--------FMKLLAMTPIGKETFFIN 258 + V + + I +K K G + + L + K FI Sbjct: 68 AQLQVSDIQERRGIQHLKIHGKGGKVRYLPLHPVAAGRIHLYLERSGHHLDDKKVPLFIP 127 Query: 259 NDKQK----MNATQFSIWFKAKATKAGV---NKSAHGVRKFSATISADAGATAHELMATY 311 + ++A +A A KAG+ HG+R +AT + D A ++ A Sbjct: 128 LRGKPTDAGVSANGIYTVVEAYAKKAGIEVAGLGVHGLRATAATNALDHEADIAKVQAWL 187 Query: 312 GWKTVDQAETYTKGADR 328 G + + Y + +R Sbjct: 188 GHANISTTKIYDRRGNR 204 >gi|317057150|ref|YP_004105617.1| integrase family protein [Ruminococcus albus 7] gi|315449419|gb|ADU22983.1| integrase family protein [Ruminococcus albus 7] Length = 378 Score = 94.3 bits (233), Expect = 3e-17, Method: Composition-based stats. Identities = 44/297 (14%), Positives = 100/297 (33%), Gaps = 40/297 (13%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISF-ESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT 129 L Y + L ++ ++ Y + I G+ + I + ++S Sbjct: 70 FSELADWYFTNYAPQELKESTVYTYWGQYKNHIEPVLGNIKVKDINAPRLTQIMQSYDLN 129 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKR-KTEGIRPWTKEDMQQFKSFWSE 188 P++ + ++ +F+ Q ++ PC +V PKR K+ + ++ +++F ++ Sbjct: 130 PATVKKLYVIVQSIFRRGAEQGFIRDTPCRNVVLPKRKKSRKNKALEEDKLKRFMAYLES 189 Query: 189 GSQP---RLAFEFLLYSGLRCSDSCRAGVQHLQ---------------NNIFSIKTQKTG 230 + + LLY+G+R + + + + KT Sbjct: 190 KPWDEDFKRIIKVLLYTGMRSGECLGLAWEDIDFENNTISINHTLTDIGGKHELTDPKTE 249 Query: 231 TIITVE-LPDGFMKLLAMTP--------------IGKETFFINNDKQKMNATQFSIWFKA 275 + I + + K+L E F++ + K Sbjct: 250 SSIRIIGMGQELKKVLLAQKDYIEKLKLALGDDFAHPEMVFVSARGNYRDRNSVYQSLKR 309 Query: 276 KATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGADRIR 330 + + H +R +AT+ ++G + G V+ A+ Y AD +R Sbjct: 310 FTKGTEFEDMTLHQLRHCNATMLLNSGIDLKVVSEHLGHCDVNVTADIY---ADVLR 363 >gi|296393822|ref|YP_003658706.1| integrase family protein [Segniliparus rotundus DSM 44985] gi|296180969|gb|ADG97875.1| integrase family protein [Segniliparus rotundus DSM 44985] Length = 444 Score = 94.3 bits (233), Expect = 3e-17, Method: Composition-based stats. Identities = 52/351 (14%), Positives = 110/351 (31%), Gaps = 56/351 (15%) Query: 48 MSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG 107 + L + + + T+K +++ S H ++ +R +E +I + G Sbjct: 56 RAFLANTQAEVSQGLYVHQNELTVKHACADWLSSRH--NIKPKTRSGYEQALMPVISQLG 113 Query: 108 DFDYRKITTKHIRSGVESRK--------------HTPSSA---IQFLTSMRVLFKWAVRQ 150 + +K+ +HI + V + + H P SA L ++ ++ + Q Sbjct: 114 HLEVQKLAKRHIDTLVSALREGKVKRGEEGGAKFHKPWSARSVNYMLLTIGMVLEDLKEQ 173 Query: 151 EYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSC 210 ++ N V R K++ +T + QQ + + + R A+ L SGLR ++ Sbjct: 174 GVLSRNVASLVTRIKQQRTVFTTFTAAETQQVLASIEQ-DRLRHAWHLAL-SGLRRAEIA 231 Query: 211 RAGVQHLQNNIFSI-------------------KTQKTGT--IITVELPDGFMKLLAMTP 249 + ++ KT+K+G +T L A Sbjct: 232 GLRWDDVDLRAKTLTIKHTIVSVGGKAVEQDDGKTEKSGRTLPLTAPLLAELKAAKARQS 291 Query: 250 I----------GKETFFINNDKQKMNATQFSIWFKAKATK--AGVNKSAHGVRKFSATIS 297 G + + + + + + H R T+ Sbjct: 292 TEKLAFGPAYQGGDHVVCDEAGRLYHPDTLTSKWAQAVKAVPDVPKIRLHDARHTCGTLM 351 Query: 298 ADAGATAHELMATYGWKTVD-QAETYTKGA-DRIRLGIKNSRRISSVVDSD 346 G + A G TY + +R R+ ++ D + Sbjct: 352 HLQGVPIAVISAWLGHADASFTMRTYVHSQPNALRDAALTLGRVVTICDKN 402 >gi|294785103|ref|ZP_06750391.1| hypothetical protein HMPREF0405_00446 [Fusobacterium sp. 3_1_27] gi|294486817|gb|EFG34179.1| hypothetical protein HMPREF0405_00446 [Fusobacterium sp. 3_1_27] Length = 351 Score = 94.3 bits (233), Expect = 3e-17, Method: Composition-based stats. Identities = 39/263 (14%), Positives = 90/263 (34%), Gaps = 18/263 (6%) Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFL 137 Y+ + ++ ++ + F++ I+ +++ + T S Sbjct: 80 YKLWLENKDVKKSTMKNYVTNFNR-SSILHKMQMNTISGLFLQNIINKANLTKGSLRNLK 138 Query: 138 TSMRVLFKWAVRQEYV-AIN-------PCLSVERPKRKTEGIRPWTKEDMQQF-KSFWSE 188 + ++ +A+ + N P +ER + + R +T E+++ + + + Sbjct: 139 SFWANIWDFALLNDLCSKKNYPKLLKLPS--IERGNKTSIRERIFTDEELEILWNNLYKD 196 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTII-TVELPDGFMKLL 245 + L Y+GLR + ++ + +I KT I T+ + D + L+ Sbjct: 197 KRKIVDIVLILCYTGLRIGELLNIKIKDIDLKEKTINITNSKTVNGIRTIPIHDKLLPLI 256 Query: 246 A-MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGAT 303 + G E F D + F F+ + + H R AT+ +A Sbjct: 257 SNRMYKGNEYLFTTLDNKHYKYDSFDNHFRILCKNLKLKYHTLHDTRHTFATLLVNAKVN 316 Query: 304 AHELMATYGWKTVDQA-ETYTKG 325 ++ G K + Y Sbjct: 317 KEVIIKMIGHKRYKTTLDIYVHK 339 >gi|295396788|ref|ZP_06806923.1| tyrosine recombinase XerD [Brevibacterium mcbrellneri ATCC 49030] gi|294970372|gb|EFG46312.1| tyrosine recombinase XerD [Brevibacterium mcbrellneri ATCC 49030] Length = 312 Score = 94.3 bits (233), Expect = 3e-17, Method: Composition-based stats. Identities = 42/269 (15%), Positives = 83/269 (30%), Gaps = 24/269 (8%) Query: 89 VNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT---PSSAIQFLTSMRVLFK 145 Y + G D +T++H+ +E H +S + ++R L Sbjct: 41 DAYARDLAKYVTYLADT-GVNDLGSVTSEHVAGFIEHIAHQNFAVTSRARITVAVRRLHH 99 Query: 146 W-AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-------SEGSQPRLAFE 197 + A +P V+ P + + + + + + E Sbjct: 100 FTAGETG--GTSPADDVQPPTDTMRLPKALSVDQVSRIIHAAGDPQSADPAQLRAVALIE 157 Query: 198 FLLYSGLRCSDSCR---------AGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMT 248 FL +G R S++ AG+ + + G+ L + Sbjct: 158 FLYATGARISEAVGVDRDDVDVDAGIARVYGKGNKERLVPLGSHAIEALGAWLTRGRPAW 217 Query: 249 PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHEL 307 F+N +++ K A A V + +AH +R AT + GA + Sbjct: 218 AASSPAVFLNARGGRLSRQSAWAIVKKAAEIADVPRVTAHSLRHSCATHLVEGGADIRIV 277 Query: 308 MATYGWKTVDQAETYTKGADRIRLGIKNS 336 G +V + YT+ + + S Sbjct: 278 QELLGHSSVTTTQIYTQVTSQALKEVYAS 306 >gi|212709694|ref|ZP_03317822.1| hypothetical protein PROVALCAL_00742 [Providencia alcalifaciens DSM 30120] gi|212687505|gb|EEB47033.1| hypothetical protein PROVALCAL_00742 [Providencia alcalifaciens DSM 30120] Length = 377 Score = 94.3 bits (233), Expect = 3e-17, Method: Composition-based stats. Identities = 54/356 (15%), Positives = 114/356 (32%), Gaps = 46/356 (12%) Query: 9 PFVTKERT-RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSA--LTGSTPKREYIN--- 62 P + ++ R+GK+ + ++ R A + ++ ++ Sbjct: 13 PNLYRKLDKRNGKVYWQYKHPLTGRFHSLGTDAEEAEQVAAQANVVIAEQQTKQILSIND 72 Query: 63 -----SPRKKPTTLKWLISEYRKS----AHWGSLAVNSRISFESYFDQIIRKSGDFDYRK 113 +K ++ I +Y + G L +NS + + G + Sbjct: 73 RLSNIKNKKIGISVSNWIDKYLEIQQERMDQGELKLNSYKQKIKPLNLFKQHCGMMSLKD 132 Query: 114 ITTKHIRSGVESRKHTPSS--AIQFLTSMRVLFKWAVRQEYVAI--NPCLSVERPKRKTE 169 IT + + K + A + + +FK A +V NP L+ ++P+ K + Sbjct: 133 ITALEVVKITDEVKALGHNRMAQVVRSVIVDVFKEAQHVGHVPPGYNPALATKKPRSKVK 192 Query: 170 GIRPWTKEDMQQFKSFWSEGSQPRLA-FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228 R + ++ + + L +G R D + + + + I+ +K Sbjct: 193 RER-LSLDEWKAIYQQAAMHPHYLQHGMLLALITGQRLGDITKMKFSDVWDGMLHIEQEK 251 Query: 229 TGTIITVELP-------------DGFMKLLAMTP---IGKETFFINNDKQKMNATQFSIW 272 TGT I + L + L ++P + + ++ T + Sbjct: 252 TGTKIAIPLTLKCDAIEMTLGDVISMCRDLVVSPYLLHHRHSIARGKKGGAISNTSLTTA 311 Query: 273 FKAKATKAGVNKS------AHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 FK K G+ S H R S I + G G ++ + Y Sbjct: 312 FKNARNKCGITWSKGAEPTFHEQRSLSERIYREQGLDT---QRLLGHRSKVMTDNY 364 >gi|167751365|ref|ZP_02423492.1| hypothetical protein EUBSIR_02351 [Eubacterium siraeum DSM 15702] gi|167655611|gb|EDR99740.1| hypothetical protein EUBSIR_02351 [Eubacterium siraeum DSM 15702] Length = 391 Score = 94.3 bits (233), Expect = 3e-17, Method: Composition-based stats. Identities = 50/293 (17%), Positives = 94/293 (32%), Gaps = 40/293 (13%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESRKHT 129 L + + ++ ++ S+++ +QI GD +TT+ ++ + K Sbjct: 71 LGEWLDRWINEYMIFTIRESTLDSYKAMIKNQIKPYLGDRPLSALTTQELQKFYNTVKKK 130 Query: 130 PSS----------AIQFLTSMRVLFKWA----VRQEYVAINPCLSVERPKRKTEGIRPWT 175 A + + ++ A VR + NP + PK + Sbjct: 131 GRVKADKLHGTELADSMVRGIHMMLHEALDMAVRLRLIVKNPTVGTTIPKNNYPPKQILN 190 Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK------- 228 E +++F + + F L +GLR + C + +K ++ Sbjct: 191 DEQLERFMQRIRQDERWYDFFYTELTTGLRRGEICGLKWEDFDAENGKLKVRRSVAKRKG 250 Query: 229 -----------TGTIITVELPDGFMKLLAMTPIGKET--FFIN--NDKQKMNATQFSIWF 273 TGT T+ LP +LL + F N ++ M+ Sbjct: 251 GGLNIGETKTETGTR-TIVLPPSTAELLRKRKETAVSEWIFPNIYEPEKPMHPDYAYHRL 309 Query: 274 KAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTK 324 K +A + H +R AT + G A L G +TYT Sbjct: 310 KTLLKQAELPLIRFHDLRHTFATHALAGGVDAKTLSGILGHTNASFTLDTYTH 362 >gi|327183903|gb|AEA32350.1| phage integrase family protein [Lactobacillus amylovorus GRL 1118] Length = 322 Score = 94.3 bits (233), Expect = 3e-17, Method: Composition-based stats. Identities = 41/292 (14%), Positives = 106/292 (36%), Gaps = 17/292 (5%) Query: 62 NSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRS 121 + P KK + + ++++ ++ + + ++ +Q++RK D RK+TT+ +R Sbjct: 35 DEPEKKKISNQEYLTKFLEAKKIEGCSERTIKYYKVTVEQLLRKVLD-PIRKVTTEQMRE 93 Query: 122 GVESRKH----TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177 + + ++ ++ F W ++Y+ +P + + + + T E Sbjct: 94 YLVDYQKINNCGKTTIDNVRRNISSFFSWLEEEDYILKSPMRRIHKIRAEKLVKNVITDE 153 Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVE 236 D+++ + + + L +G+R + R + + + K V Sbjct: 154 DIERLRDGCDC-LRDVAMIDLLYSTGIRVGELVRLNRSDINFSERECVVFGKGDKERRVY 212 Query: 237 LPDG----FMKLLAMTPIGKETFFINNDKQKMNA---TQFSIWFKAKATKAGVNK-SAHG 288 + L F++ D + + + I + K +++ H Sbjct: 213 FDAKSKIHLINYLKSRTDANPALFVSLD-RPYSRLKISGVEIRLRQLGRKLNLDRVHPHK 271 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340 R+ AT + D G ++ G +D Y ++ + + + IS Sbjct: 272 FRRSMATRAIDKGMPIEQVQKILGHSQIDTTMQYA-IVNQNNVKAAHRKYIS 322 >gi|241992607|gb|ACS73659.1| IntI1 [uncultured bacterium] Length = 315 Score = 94.3 bits (233), Expect = 3e-17, Method: Composition-based stats. Identities = 42/306 (13%), Positives = 93/306 (30%), Gaps = 62/306 (20%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHT 129 ++ + R+ + ++ + ++ + IR G + + + + + RK + Sbjct: 16 VLDQLRERIRYLHYSLRTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75 Query: 130 PSSAIQFLTSMRVLFK--WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 S+ Q L ++ + ++ + RP+ T +++ + F Sbjct: 76 VSTHRQALAALLFFYGKVLCTDLPWLQ-----EIGRPRPSRRLPVVLTPDEVVRILGFL- 129 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQKTGTIITVELPDGFMKLL 245 EG RL + L +G+R S+ + V+ + ++ K + LP+ L Sbjct: 130 EGEH-RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSL 188 Query: 246 AMTPIGKETFFINN---------------------------------------------D 260 +++ + Sbjct: 189 REQLSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWLWVFAQHTHSTDPRSGVVR 248 Query: 261 KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318 + M F FK +AG+ K + H +R AT +G + G V Sbjct: 249 RHHMYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVST 308 Query: 319 AETYTK 324 YT Sbjct: 309 TMIYTH 314 >gi|262202503|ref|YP_003273711.1| integrase family protein [Gordonia bronchialis DSM 43247] gi|262202582|ref|YP_003273790.1| integrase family protein [Gordonia bronchialis DSM 43247] gi|262085850|gb|ACY21818.1| integrase family protein [Gordonia bronchialis DSM 43247] gi|262085929|gb|ACY21897.1| integrase family protein [Gordonia bronchialis DSM 43247] Length = 608 Score = 94.3 bits (233), Expect = 3e-17, Method: Composition-based stats. Identities = 48/274 (17%), Positives = 88/274 (32%), Gaps = 31/274 (11%) Query: 86 SLAVNSRISFESYFDQIIRKSGDFDYR-----KITTKHIRSGVESRKHTPS--------- 131 SL N+ E + D + ++ HI + TP+ Sbjct: 225 SLRPNTVTGIEHDLRRFGSWLTDTHPQIANCAELQRVHIEEFKKWLSTTPTPRTGKPLNR 284 Query: 132 -SAIQFLTSMRVLFKWAVRQEY--VAINPCLSV-ERPKRKTEGIRPWTKEDMQQFKSFWS 187 S L ++ F +Y + P + + + P R + Sbjct: 285 VSIKNALINLHCFFDRITDWDYPNAPVRPLVFIGDLPIIDKPLPRFLDDGAATKLLRAAR 344 Query: 188 EGSQP--RLAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVELPDGF 241 + P RL E L +G+R S+ + I K + L Sbjct: 345 ADTDPLSRLIVELLARTGIRISELLGLTTDAVVQIGTAFWLRIPLGKMHNDRYIPLHPQL 404 Query: 242 MKLLA-----MTPIG-KETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSA 294 +LL P G + + + + + + + + + A AG+ +AH +R A Sbjct: 405 KELLDDWIDNHRPTGIRTSRLLVENHRPITSHRVTAALDRHAEAAGIGHVTAHQLRHTLA 464 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADR 328 T + + G + + A G KT+ Y + ADR Sbjct: 465 TQAINRGMSLDAIAALLGHKTLAMTMVYARIADR 498 >gi|220683968|gb|ACL80790.1| IntIA [Vibrio tasmaniensis] Length = 324 Score = 94.3 bits (233), Expect = 3e-17, Method: Composition-based stats. Identities = 48/312 (15%), Positives = 102/312 (32%), Gaps = 62/312 (19%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE----SR 126 I EY + H+ A+ + ++ + Q I + +T++H+ + + Sbjct: 6 FLAYIQEYMLARHY---ALRTTKAYIYWIHQYILYHDKKHPKSLTSRHVEDFLTHLVIDK 62 Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 K + L ++ L+K + QE + ++ + R + + T E++ +F + Sbjct: 63 KLAQKTQSLALNALVFLYKE-IIQEPIELD--MQFRRSDKSRKLPTVMTPEEIGRFFNHC 119 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKL 244 S + L ++ + SGLR + R +Q + + S++ K G V + Sbjct: 120 SPNFK--LPYQLMYGSGLRLMECLRLRMQDIDYDYKSVRVWQGKGGKNRIVTIAPELFPA 177 Query: 245 LAMT-------------------------------------------PIGKETFFINN-- 259 + + P + + Sbjct: 178 IKLQQQKSAEYHQQDIHDEAFSGVYLPDSLAKKYPSAERSLNWQFLFPSARLAPDLRTGV 237 Query: 260 -DKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTV 316 + ++ T K + KA + K H +R AT +GA + G + Sbjct: 238 LRRHHIHPTALQKHIKVASQKADIEKDISCHTLRHSFATHLLQSGADIRTVQEQLGHADL 297 Query: 317 DQAETYTKGADR 328 + YT DR Sbjct: 298 KTTQIYTHIIDR 309 >gi|148455782|gb|ABQ65129.1| IntI1 [Pseudomonas aeruginosa] Length = 337 Score = 94.3 bits (233), Expect = 3e-17, Method: Composition-based stats. Identities = 42/306 (13%), Positives = 93/306 (30%), Gaps = 62/306 (20%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHT 129 ++ + R+ + ++ + ++ + IR G + + + + + RK + Sbjct: 16 VLDQLRERIRYLHYSLRTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75 Query: 130 PSSAIQFLTSMRVLFK--WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 S+ Q L ++ + ++ + RP+ T +++ + F Sbjct: 76 VSTHRQALAALLFFYGKVLCTDLPWLQ-----EIGRPRPSRRLPVVLTPDEVVRILGFL- 129 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQKTGTIITVELPDGFMKLL 245 EG RL + L +G+R S+ + V+ + ++ K + LP+ L Sbjct: 130 EGEH-RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSL 188 Query: 246 AMTPIGKETFFINN---------------------------------------------D 260 +++ + Sbjct: 189 REQLSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVR 248 Query: 261 KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318 + M F FK +AG+ K + H +R AT +G + G V Sbjct: 249 RHHMYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVST 308 Query: 319 AETYTK 324 YT Sbjct: 309 TMIYTH 314 >gi|253565833|ref|ZP_04843287.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] gi|251944937|gb|EES85375.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] Length = 408 Score = 94.3 bits (233), Expect = 3e-17, Method: Composition-based stats. Identities = 53/323 (16%), Positives = 112/323 (34%), Gaps = 40/323 (12%) Query: 43 FIPAYMS-ALTGST-PKREYINSPRKKPTTLKWLISEYRKSAHW------GSLAVNSRIS 94 F Y L G R +N + K T K L + +++ A + Sbjct: 80 FYQIYQDLELEGKIISARAIVNRYQGKDETFKTLYNVFKEHNDNCRKLIGTDYADITVRR 139 Query: 95 FESYFDQIIR------KSGDFDYRKITTKHIRSGVESRKH----TPSSAIQFLTSMRVLF 144 +++ ++ K D R++ + +R K ++ I+++ + + Sbjct: 140 YDNCLKYLMELVKRDYKVDDMLLREVNGELVRKFDLYLKTEKHCAQNTVIRYMKCFKKVI 199 Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF---KSFWSEGSQPRLAFEFLLY 201 A+ E++ NP ++ + + + ++ ++ + + R F F +Y Sbjct: 200 NLAIANEWLTKNPFAGIKFHEVEVNK-QFLSQAEINRIWQKEFRIERLELVRDVFIFCVY 258 Query: 202 SGLRCSDSCRAGVQHLQNN-----IFSIKTQKTGTIITVELPDGFMKLLAMTP-----IG 251 +GL D +H+ + +KT + + L ++L + Sbjct: 259 TGLAFIDVYNLRPEHISEDSNGNLWIVKPREKTNNLCNIPLLSISKQILEKYKDNPYCMD 318 Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAG-ATAHELM 308 K T QKMN+ + K A G+ K + H R A++ A A + + Sbjct: 319 KGTLLPVPCNQKMNS-----YLKEIADLCGIKKNLTTHTARHSFASVIALANNVSLPNVA 373 Query: 309 ATYGWKTVDQAETYTKGADRIRL 331 G + + Y K D+ L Sbjct: 374 KMLGHSSTRMTQHYAKVLDQTIL 396 >gi|220683973|gb|ACL80794.1| IntIA [Vibrio splendidus] Length = 324 Score = 94.3 bits (233), Expect = 3e-17, Method: Composition-based stats. Identities = 47/311 (15%), Positives = 98/311 (31%), Gaps = 60/311 (19%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130 I EY H+ A+ + ++ + Q I R +T++H+ + Sbjct: 6 FLAYIQEYMLGRHY---ALRTTQAYIYWIHQYILYHDKKHPRSLTSRHVEDFLTHLVVDR 62 Query: 131 SSAIQFLTSMRVLFKWAVR---QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 SA + + + + QE + ++ + R + + T E++ +F + S Sbjct: 63 KSAQKTQSLALNAIVFLCKEIVQEPIELD--MQFRRSDKSRKSPTVMTPEEIGRFFNHCS 120 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLL 245 + L ++ + SGLR + R +Q + + S++ K G V + + Sbjct: 121 PNFK--LPYQLMYGSGLRLMECLRLRMQDIDYDYKSVRVWQGKGGKNRIVTIAPELFPAI 178 Query: 246 AMTPIGKETFFINN---------------------------------------------- 259 + ++ + Sbjct: 179 KLQQQKSAEYYQQDIHDKAFSGVYLPDSLAKKYPSAERSLNWQFLFPSARLAPDLRTGEL 238 Query: 260 DKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVD 317 + ++ T K + KA + K S H +R AT +GA + G + Sbjct: 239 RRHHIHPTALQKHIKVASQKADIEKNISCHTLRHSFATHLLQSGADIRTVQEQLGHTDLK 298 Query: 318 QAETYTKGADR 328 + YT DR Sbjct: 299 TTQIYTHIIDR 309 >gi|182420352|ref|ZP_02951578.1| integrase/recombinase, phage integrase family [Clostridium butyricum 5521] gi|237668584|ref|ZP_04528568.1| integrase/recombinase, phage integrase family [Clostridium butyricum E4 str. BoNT E BL5262] gi|182375796|gb|EDT73391.1| integrase/recombinase, phage integrase family [Clostridium butyricum 5521] gi|237656932|gb|EEP54488.1| integrase/recombinase, phage integrase family [Clostridium butyricum E4 str. BoNT E BL5262] Length = 333 Score = 94.3 bits (233), Expect = 3e-17, Method: Composition-based stats. Identities = 42/256 (16%), Positives = 92/256 (35%), Gaps = 11/256 (4%) Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE--SRKHTPSSAIQ 135 Y L+ + +++ + ++ I+T +R + + S+ Sbjct: 65 YLACKKLEGLSSKTLYNYKLFLIKLNMYF-TKPVSTISTMDLRMFLAVLGKGKQASTTNG 123 Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA 195 ++T ++ F W +EY+ NP +++ K ++ + E++++ + + + Sbjct: 124 YITYLKNFFGWLQNEEYILKNPAAKLKQTKVPKVILQGYKAENLEKLREAC-VTEKQKCL 182 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKE- 253 FE L + R S+ ++ + I T K V L G+E Sbjct: 183 FELLDSTACRISEIDEIKIEDINWQEQSIIVTGKGNKQRVVYFSTKAKLHLKAYITGREE 242 Query: 254 -TFFIN--NDKQKMNATQFSIWFKAKATKAGVNKSAHG--VRKFSATISADAGATAHELM 308 F++ Q + + KAGV + H R+ AT ++G T + Sbjct: 243 GHVFVSDKAPHQHIGVRALQLIVAKIKEKAGVTEKVHCHKFRRTQATYLLNSGMTIQGVQ 302 Query: 309 ATYGWKTVDQAETYTK 324 G + D + Y + Sbjct: 303 KILGHTSPDVTQRYAQ 318 >gi|317501739|ref|ZP_07959926.1| phage integrase [Lachnospiraceae bacterium 8_1_57FAA] gi|316896861|gb|EFV18945.1| phage integrase [Lachnospiraceae bacterium 8_1_57FAA] Length = 350 Score = 94.3 bits (233), Expect = 3e-17, Method: Composition-based stats. Identities = 50/296 (16%), Positives = 93/296 (31%), Gaps = 30/296 (10%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133 I Y + L NS + + + I+ G +IT I + + S Sbjct: 62 IQVYFEDKK-NELKENSIRNKQHMMNKHIVPYFGTRKMNEITPAEIIQWQNTIQEKGYSK 120 Query: 134 IQ---FLTSMRVLFKWAVRQEYVAINPCLSVER-PKRKTEGIRPWTKEDMQQFKSFWSEG 189 + LF A + + NPC V++ K + WTK + +F + G Sbjct: 121 TYERMIQNQLNALFNHAQKIYNLKENPCKKVKKMGKSDANKLEFWTKAEYDRFIAGIEPG 180 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQ-------------KTGTII- 233 S+ L FE L ++G+R + + N+ I KT + Sbjct: 181 SEDYLIFEILFWTGIREGELLALSLLDFDMSGNLLHINKTYNRIRKRDVIDTPKTENSVR 240 Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKF 292 T+++P+ + + F + + A K V H +R Sbjct: 241 TIDIPNFLKEEVQEYAKKHYGFPEDQRLFPIVARTLQKRLKKYEALTSVKPIRVHDIRHS 300 Query: 293 SATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSVVDSDD 347 G + G K + TY L ++++ ++D+ Sbjct: 301 HVAYLIYQGVEPLIIKERLGHKDIQMTLNTYGH------LYPSQQKKVAEMLDNKR 350 >gi|319945012|ref|ZP_08019274.1| phage integrase family site-specific recombinase [Lautropia mirabilis ATCC 51599] gi|319741582|gb|EFV94007.1| phage integrase family site-specific recombinase [Lautropia mirabilis ATCC 51599] Length = 396 Score = 94.3 bits (233), Expect = 3e-17, Method: Composition-based stats. Identities = 55/358 (15%), Positives = 121/358 (33%), Gaps = 34/358 (9%) Query: 10 FVTKERTRHGKIIYYFR-KGHGRRIRLPYPHEST---------FIPAYMSALTGSTP--K 57 + E G I++ +R + G+R +L + A G +P K Sbjct: 25 GLYVEVLPSGSIVWRYRYRLDGKREKLTLGKYPALTLKNARLKWDEAAHQVAMGESPAKK 84 Query: 58 REYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITT 116 ++ + TT+ + K + Y ++ I+ G R IT Sbjct: 85 KQQEKVSGAENTTVVDFAERFFKDIQSRDRKDVTMP--RRYLEKDILPHIGSKPVRDITA 142 Query: 117 KHIRSGVESRKHTP--SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER--PKRKTEGIR 172 + +R+ + +K ++A Q ++ +F +A+ + NP +++ R R Sbjct: 143 EDVRNVIWRKKEQGFDAAAGQVRGLLKRMFDYALTCGLIQANPVMALPMRHVYRAAARDR 202 Query: 173 PWTKEDMQQFKSFWSEGSQPR---LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK---- 225 T ++++ F + R +AF+ +L + +R S+ A + + N Sbjct: 203 ALTPDEIKLFLRAMQTSNIRRQFKIAFQLILMTLVRKSELMLAQWKDVHVNEGEWHIPVE 262 Query: 226 TQKTGTIITVELP---DGFMKLLAMTPIGKETFFINNDK--QKMNATQFSIWFKAKATKA 280 KTG + V L K L + + + K Sbjct: 263 NSKTGKLHIVYLSTQAQTLFKELKPLASSSDWVLPGRGTLAKPFANNALNQALKVSLQGQ 322 Query: 281 GVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG--ADRIRLGIKN 335 + + H +R+ ++T+ + G + + Y + A++ R ++ Sbjct: 323 EIPAFTIHDLRRTASTLLHEQGWPSDVVEKALNHTIGGVRGVYNRAEYAEQRREMLQA 380 >gi|295691144|ref|YP_003594837.1| integrase family protein [Caulobacter segnis ATCC 21756] gi|295433047|gb|ADG12219.1| integrase family protein [Caulobacter segnis ATCC 21756] Length = 309 Score = 94.3 bits (233), Expect = 3e-17, Method: Composition-based stats. Identities = 44/271 (16%), Positives = 90/271 (33%), Gaps = 32/271 (11%) Query: 85 GSLAVNSRISFE----SYFDQIIRKSGDF----DYRKITTKHIRSGVESRKHT-----PS 131 + + ++ +Y + + G+ +I+ +R + R+ P Sbjct: 23 RRASPRTVRAYGDNVLAYLNFLENHRGEALSVAALGEISAADLRGYLAFRRQGENALAPR 82 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLS-VERPKRKTEGIRPWTKEDMQ--QFKSFWS- 187 S Q L+S+R ++ V Q + N + V P+ K RP +++ + F++ Sbjct: 83 SISQALSSIRAFHRY-VDQRHGVANAAIGLVRGPRLKIGLPRPVSEDQARDLIFEASGDT 141 Query: 188 -----EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242 E ++ L GLR S++ + T K G + D Sbjct: 142 EREPWETARDEAVLTLLWGCGLRISEALSLTWSDVPLGAALRITGKGGKTRIAPVLDAVR 201 Query: 243 KLLAMTPIG-------KETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFS 293 + +A+ E F ++ + + G+ + H R Sbjct: 202 EAVAVYADELPFVLGPDEPLFRAKRGGPLSPRHVQALVQTLRGRLGLSDRVTPHAFRHAF 261 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTK 324 AT AGA + G ++ + YT+ Sbjct: 262 ATHLLGAGADLRTIQELLGHASLSTTQRYTQ 292 >gi|238020439|ref|ZP_04600865.1| hypothetical protein GCWU000324_00320 [Kingella oralis ATCC 51147] gi|237867419|gb|EEP68425.1| hypothetical protein GCWU000324_00320 [Kingella oralis ATCC 51147] Length = 336 Score = 94.3 bits (233), Expect = 3e-17, Method: Composition-based stats. Identities = 42/243 (17%), Positives = 84/243 (34%), Gaps = 14/243 (5%) Query: 92 RISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP---SSAIQFLTSMRVLFKWA- 147 + S S ++ G + + + R+ +++ P S+ ++L +R + A Sbjct: 36 KKSIRSDIGRLRA-LGALRGKDLASLDRRTIMQTVIALPCGNSTKNRYLALIRAILNKAA 94 Query: 148 VRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS-EGSQPRLAFEFLLYSGLRC 206 E++ P + + + IR + Q+ + + F L +GLR Sbjct: 95 REWEWLDHAP--RLTLYQEPKKRIRWLKPAEAQKLLDVLAQRHTLLHDLAAFSLATGLRQ 152 Query: 207 SDSCRAGVQHLQNN----IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ 262 + + + + K G I V L + +L F N+ + Sbjct: 153 RNVLELKWEQIDIQRRTAWINADQTKGGQAIGVPLNQTALHILQQQKRCAVYVFTQNNGK 212 Query: 263 KMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAET 321 K+++ IW K +AG+ + H +R A+ G L GW+ E Sbjct: 213 KLHSISSRIW-KDCLKEAGIHDFRWHDLRHTWASWLIQRGVPIAVLKEMGGWENAKMVER 271 Query: 322 YTK 324 Y Sbjct: 272 YAH 274 >gi|169795355|ref|YP_001713148.1| putative integrase/recombinase protein [Acinetobacter baumannii AYE] gi|169148282|emb|CAM86147.1| putative integrase/recombinase protein [Acinetobacter baumannii AYE] Length = 339 Score = 94.3 bits (233), Expect = 3e-17, Method: Composition-based stats. Identities = 45/288 (15%), Positives = 96/288 (33%), Gaps = 28/288 (9%) Query: 48 MSALTGSTPKREYINSPR--KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRK 105 +A+ K + + K P K L +Y + + S+ + D + R Sbjct: 37 WAAMKLLELKSGKVQEEKGIKTPYPFKMLCEKYYAE---KGIKLRSKHVIRNKLDNLERI 93 Query: 106 SGDFDYRKI---TTKHIRSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQE-YVAINPCL 159 G+ + I I R + + + + +F +A ++ + N Sbjct: 94 VGELASKSIYDFKPSDIARWRNKRVLEVKNGTVLYEFSIFSSIFTYAQKELFLIESNVWQ 153 Query: 160 SVERPKRKTEGIRPWTKEDMQQFK--SFWSEGSQPRL-------AFEFLLYSGLRCSDSC 210 +V +P++ + T +D ++ + W + + PR A F L + +R + Sbjct: 154 NVIKPEKGKSRSQRITFDDQEKILQQAKWDKNNPPRFVKHYVCWAMLFALETAMRQGEIL 213 Query: 211 RAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFS 270 + +++ + K G V L +LL++ P + + A F Sbjct: 214 GMRREDIKDGFVHLPMTKNGESRNVPLSKEAKRLLSLLPSNTDILL------PVKAETFK 267 Query: 271 IWFKAKATKAGVNK-SAHGVRKFSATIS-ADAGATAHELMATYGWKTV 316 + A + + H R + T + L G KT+ Sbjct: 268 RTWIKIRDAADLKHINFHDTRHEAITRMVRERKLPVEVLAKITGHKTI 315 >gi|124010561|ref|ZP_01695187.1| tyrosine recombinase XerD [Microscilla marina ATCC 23134] gi|123982265|gb|EAY23838.1| tyrosine recombinase XerD [Microscilla marina ATCC 23134] Length = 299 Score = 94.3 bits (233), Expect = 3e-17, Method: Composition-based stats. Identities = 40/279 (14%), Positives = 86/279 (30%), Gaps = 41/279 (14%) Query: 83 HWGSLAVNSRISFESYFD---QIIRKSGDFDYRKITTKHIRSGVESRKHTPS-------S 132 A ++ + + ++G D + + + PS S Sbjct: 21 RTLGYAPDTCRKYPRQLREFLHFLEETGIVDLSSVDGAVVECFFTYLQSRPSIKTGKSLS 80 Query: 133 AIQFL---TSMRVLFKWAVRQEYVAINPCLSVERPKRKT---EGIRPWTKEDMQQFKSFW 186 L ++R ++ P ++ R + + + + +++ ++ + Sbjct: 81 TTHLLSMQKTLRQFTRYLDALGL----PGFALPRLRLQGLAAQSLEVFSQAEIDGLYAAC 136 Query: 187 SE---GSQPRLAFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQKTGTIITVELPDGF 241 G + + GLR ++ + V H + +K K +V +P Sbjct: 137 GTDFYGLRDQALLALGYGCGLRRAEVSQLEVSDLHFKKGWLEVKAGKGAKARSVPMPTKV 196 Query: 242 MKLL--------AMTPIGKET--FFINNDKQKMNATQFSIWFKAKATKAGV------NKS 285 L A P T ++ +++ SI F+ KA + S Sbjct: 197 AAYLYRYVYQARAQLPQSGTTPALLLSWRATRLSKQMVSIRFRELVIKAELLSSEDKRTS 256 Query: 286 AHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R AT AG + + G ++D YT Sbjct: 257 FHCLRHSIATHLHAAGVSLANIALFLGHSSLDSTRIYTH 295 >gi|325001053|ref|ZP_08122165.1| integrase family protein [Pseudonocardia sp. P1] Length = 297 Score = 93.9 bits (232), Expect = 3e-17, Method: Composition-based stats. Identities = 48/276 (17%), Positives = 102/276 (36%), Gaps = 28/276 (10%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQI---IRKSGDFDYRKITTKHIRSGVES---- 125 L++ + S + N+R ++ + G D ++ HI + + Sbjct: 3 QLVAAFLLSCR----SANTRRAYTRDIRDFHTWCAQHG-LDLLEVRRVHIDGYIAALATP 57 Query: 126 -----RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP--WTKED 178 R P++ + L+++ L+ +A + Y+ +P VERP+ + E Sbjct: 58 QPRTGRPAAPATVARKLSALAGLYDYAAAEGYLPGSPLTRVERPRVGDDSQTTGLDRDEL 117 Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK---TQKTGTIITV 235 + + ++G++ L ++GLR +++ V+HL +K G TV Sbjct: 118 RRLLAAAAADGTRSHALMLLLAHNGLRINEALSRDVEHLDTERGHQVLRLRRKGGRGATV 177 Query: 236 ELPDGFMKLLAMTPIGKET--FFINNDKQKMNATQFSIWFKAKATKAGVNKS----AHGV 289 L +A G+ T FI ++++ + A A + ++ H + Sbjct: 178 PLSAPVAHAIATYLDGRPTGPIFITRTGRRLDEPAAWRLIRRLARYAELPQADRINPHTL 237 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 R T + DAG + ++ G Y + Sbjct: 238 RHAFVTAALDAGVSLRDVQDGAGHSDPRTTRRYDRA 273 >gi|262382327|ref|ZP_06075464.1| integrase [Bacteroides sp. 2_1_33B] gi|262295205|gb|EEY83136.1| integrase [Bacteroides sp. 2_1_33B] Length = 310 Score = 93.9 bits (232), Expect = 3e-17, Method: Composition-based stats. Identities = 48/303 (15%), Positives = 103/303 (33%), Gaps = 41/303 (13%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTK---HIRSGVESRKH 128 I+ R+ + +S S++ + +R G Y +I + + + R+ Sbjct: 13 YIARLREQGRY-----SSAKSYQDALNSFLRFCGQEVIPYTRIDREMLLRYQDYLRDREC 67 Query: 129 TPSSAIQFLTSMRVLFKWAVRQE------YVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 + ++ ++ +R ++ A+ Y+ + V+ ++K E ++ Sbjct: 68 SWNTVSTYMRRIRRVYGLAMENGEAPFSRYLFKGIFMGVKSKQKK-----ALPTESLRLL 122 Query: 183 KS--FWSEGSQ--PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238 + G + R L+ G+ D ++N + QKTGT + VE+ Sbjct: 123 MTAPLDDSGLRKTQRALCLMFLFCGMAFVDFAHLKKSDIRNGVLRYNRQKTGTPMLVEIQ 182 Query: 239 DGFMKLLAM----TPIGKETFFINNDKQKMNATQFS----------IWFKAKATKAGVNK 284 +LLA T F K F K A GV + Sbjct: 183 PVAKELLAALMTGTLRDSPYLFTFLSGTKTGEEAFREYTSALADFNSSLKELANACGVTE 242 Query: 285 --SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342 +++ +R AT + G + G +++ + Y K ++ N S+ Sbjct: 243 MVTSYSIRHSFATTLKEQGVPIEMISELLGHQSIKTTQIYLKSFSLDKMSAVNKACFESI 302 Query: 343 VDS 345 ++ Sbjct: 303 YNN 305 >gi|153821974|ref|ZP_01974641.1| integrase [Vibrio cholerae B33] gi|229508872|ref|ZP_04398363.1| integrase [Vibrio cholerae B33] gi|126520513|gb|EAZ77736.1| integrase [Vibrio cholerae B33] gi|229354147|gb|EEO19079.1| integrase [Vibrio cholerae B33] Length = 385 Score = 93.9 bits (232), Expect = 3e-17, Method: Composition-based stats. Identities = 53/328 (16%), Positives = 99/328 (30%), Gaps = 31/328 (9%) Query: 29 HGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLA 88 R H + + + + E + T L +Y S S A Sbjct: 48 DKPRSPAEREHNKEALRIAEAVRSKRLLESETSKHKLEDRTKLSASFFDYYDSVT-DSKA 106 Query: 89 VNSRISFESYFD---QIIRKSG--DFDYRKITTKHIRSGV----------ESRKHTPSSA 133 S+ ++ + + R G + + I + + + ++ Sbjct: 107 SGSKSNYSIWVSAGHHLRRYHGRAELTFEDIDRAFLEGFKTYLLKSATTKSDQLLSRNTV 166 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193 + +R A ++ + NP +V+ K +T T E+++ + Sbjct: 167 SSYFNKIRAALNQAYQEGIIRDNPVRTVKSVKPETNQRVYLTLEEIKAMAKAECRYDVLK 226 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQN-----NIFSIKTQK----TGTIITVELPDGFMKL 244 AF F +GLR SD + ++ K +K + ++LPD ++L Sbjct: 227 RAFLFSCTTGLRWSDIQKLVWSEVEEFEQGHFRIIFKQKKIQNRGTALQYLDLPDSAVRL 286 Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGA 302 + E F W A AG+ K + H R A G Sbjct: 287 MGERKDNDERVFKALRYSSYTNVALLHW----AMLAGITKHVTFHAGRHSFAVNQLARGL 342 Query: 303 TAHELMATYGWKTVDQAETYTKGADRIR 330 + L G + E Y D+ R Sbjct: 343 DIYSLSRLLGHSELKTTEIYADILDQRR 370 >gi|152976339|ref|YP_001375856.1| phage integrase family protein [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152025091|gb|ABS22861.1| phage integrase family protein [Bacillus cytotoxicus NVH 391-98] Length = 376 Score = 93.9 bits (232), Expect = 3e-17, Method: Composition-based stats. Identities = 43/304 (14%), Positives = 98/304 (32%), Gaps = 30/304 (9%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHT 129 L+ + + ++ ++ +++ + GD I + + + Sbjct: 63 FSQLVEIWMQEKETTC-RPSTLYQYKRILRSRVMPEFGDKKLSNIKPLTVHNFHQKMIKE 121 Query: 130 PSSAIQFLTS---MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + + ++ + V E ++ NP +RPK K + WT E F Sbjct: 122 GLTTKYISSVDVMLKQILDKGVELEMISSNPAKKAKRPKVKKKAQASWTIEQAMTFIDCA 181 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT------------ 234 +AF L++G+R + + +I Q+T T++ Sbjct: 182 KLKGSYYIAFVLALHTGMRIGEVLALQWGDIDFEKKTIHVQRTLTLVDGKYVLGETKTEA 241 Query: 235 ----VELPDGFMKLLAMTPIGK-----ETFFINNDKQKMNATQFSIWFKAKATKAGVNK- 284 + + + + L K + +K+ ++ KA V Sbjct: 242 SNRVIPMTEELVDELVEYQKYKKENPLDLLICTRNKKIVHPYTIRYQMKALCEAIDVPYI 301 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSVV 343 H +R+ TI D+ A + G V + YT + + I+ + ++ + + Sbjct: 302 RFHDIRRTFTTILIDSNVNAKVVAKLLGHTNVSTSLNIYTDVYEERQ--IEAAEKLQNAL 359 Query: 344 DSDD 347 S Sbjct: 360 KSGR 363 >gi|326333337|ref|ZP_08199584.1| phage-related integrase [Nocardioidaceae bacterium Broad-1] gi|325948981|gb|EGD41074.1| phage-related integrase [Nocardioidaceae bacterium Broad-1] Length = 421 Score = 93.9 bits (232), Expect = 3e-17, Method: Composition-based stats. Identities = 43/290 (14%), Positives = 91/290 (31%), Gaps = 41/290 (14%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESR-KH 128 L+ + LA ++ + I+ F ++TT + + + ++ Sbjct: 75 FTTLVERWDADLETKELADGTKDHYRDQVRLYIMPAFEHFTLAELTTGRVEALLNAQEAD 134 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-- 186 +PS A + T + +LF +A+R + + NP R + + T E + + + Sbjct: 135 SPSRARKTRTVLNLLFGYALRHDAINRNPVQGTSRLRAVKNKPKALTLEQVSKIREAAAN 194 Query: 187 ----------SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN--------IFSIKTQK 228 Q R E LL + +R + + + ++ +K Sbjct: 195 WRTQPGLPGPKPDGQVRDIIEILLGTAMRPGEVLALRPCDITDGPAGMIAAVTGTVVQRK 254 Query: 229 TG------------TIITVELPDGFMKLLAMTPIG---KETFFINNDKQKMNATQFSIWF 273 + V +P+ ++ G + T F + F Sbjct: 255 KKGTFRQERPKTDSSNRLVPVPEFAAAVIRRRLRGVPTERTIFAGRTGGPLVPPNVRRTF 314 Query: 274 KAKATKAGVNKSAHGV---RKFSATISADAGATAHELMATYGWKTVDQAE 320 + AG+ S + R+ AT+ A G + G + E Sbjct: 315 REFLVDAGLGDSGISLRWYRRTGATVIA-RGMDSDAAATFLGHTSSAITE 363 >gi|21716073|ref|NP_663635.1| putative integrase [Lactococcus phage ul36] gi|21700236|gb|AAM75749.1| putative integrase [Lactococcus phage ul36] gi|89212524|gb|ABD63636.1| putative integrase [Lactococcus phage ul36.k1] gi|89212585|gb|ABD63696.1| putative integrase [Lactococcus phage ul36.k1t1] gi|89212637|gb|ABD63747.1| putative integrase [Lactococcus phage ul36.t1] gi|89212690|gb|ABD63799.1| putative integrase [Lactococcus phage ul36.t1k1] Length = 359 Score = 93.9 bits (232), Expect = 3e-17, Method: Composition-based stats. Identities = 40/338 (11%), Positives = 107/338 (31%), Gaps = 28/338 (8%) Query: 13 KERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR-KKPTTL 71 + ++G Y F+ G++ E + A +E I++P K T Sbjct: 5 AYKKKNGTTAYKFKAYIGKKNGKSQYAEKSGFKTKADARAALHNIQEEIDNPTPKSAMTF 64 Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131 K L E+ + ++ ++ G T +++ Sbjct: 65 KELYDEWLLVYEKEVQNSTYYKTTRAFEKHVLPVIGSTKLSDFTPMELQNFRNDLSEKLK 124 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPC-----LSVERPKRKTEGIRPWTKEDMQQFKSFW 186 A + +R +F A Y+ NP +++ + + ++++ F + Sbjct: 125 FARKLFGMVRKVFNHAALLSYIQANPAAPVTSQGIKKKVEEKKDFY--DTDELRDFMALV 182 Query: 187 SEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244 + + + F L ++G+R + + + + I + + + E+ Sbjct: 183 EKTNDIKKIALFRILAFTGIRKGELLALEWKDYRKSTLDINKAISHSPVGYEILPPKANS 242 Query: 245 LAMTPIGKET----------------FFINNDKQKMNATQFSIWFKAKATKAGV-NKSAH 287 + + ++T F + + ++ ++ W + + H Sbjct: 243 NRLLSLDEKTCKILDELHQTYPESTRIFESENGGMLSPSKPRKWLLEITKEKEIEPIRIH 302 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTK 324 R A++ ++G + ++ G + YT Sbjct: 303 AFRHTHASLLFESGMSLKQVQYRLGHADLKTTMNIYTH 340 >gi|301162189|emb|CBW21734.1| putative bacteriophage integrase [Bacteroides fragilis 638R] Length = 368 Score = 93.9 bits (232), Expect = 3e-17, Method: Composition-based stats. Identities = 48/244 (19%), Positives = 89/244 (36%), Gaps = 20/244 (8%) Query: 105 KSGDFDY---RKITTKHIRSGVESRKHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPC 158 GD + +K + + + P +SA + ++ R L K A R ++ N Sbjct: 127 TFGDVNVDLCKKFREYLLNAKQLKHSNRPMSLNSASGYYSTFRGLLKIAYRDKWFRENIN 186 Query: 159 LSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL- 217 +++ + + T +++Q + + + A F +GLR SD + Sbjct: 187 DYLDKIEPQDVKKEYLTLNEVKQLAATPCDIPVLKAASLFACLTGLRISDILNLQWEDFT 246 Query: 218 ----QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWF 273 Q I+TQKT T T+ + + L TP + F + + + + Sbjct: 247 IAPDQGYCLRIRTQKTQTEATLPISYEAYE-LCGTPGTGKVF------KDLKRSMINYPL 299 Query: 274 KAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 K+ KAG+ K + HG R A I G + + K V + Y + + Sbjct: 300 KSWLKKAGITKPITFHGFRHSYAVIQISLGTDIYTVSKMLTHKNVSTTQIYADLVNSKKR 359 Query: 332 GIKN 335 N Sbjct: 360 ETAN 363 >gi|298374771|ref|ZP_06984729.1| integrase [Bacteroides sp. 3_1_19] gi|301308464|ref|ZP_07214418.1| integrase [Bacteroides sp. 20_3] gi|298269139|gb|EFI10794.1| integrase [Bacteroides sp. 3_1_19] gi|300833934|gb|EFK64550.1| integrase [Bacteroides sp. 20_3] Length = 310 Score = 93.9 bits (232), Expect = 3e-17, Method: Composition-based stats. Identities = 48/303 (15%), Positives = 103/303 (33%), Gaps = 41/303 (13%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTK---HIRSGVESRKH 128 I+ R+ + +S S++ + +R G Y +I + + + R+ Sbjct: 13 YIARLREQGRY-----SSAKSYQDALNSFLRFCGQEVIPYTRIDREMLLRYQDYLRDREC 67 Query: 129 TPSSAIQFLTSMRVLFKWAVRQE------YVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 + ++ ++ +R ++ A+ Y+ + V+ ++K E ++ Sbjct: 68 SWNTVSTYMRRIRRVYGLAMENGEAPFSRYLFKGIFMGVKSKQKK-----ALPTESLRLL 122 Query: 183 KS--FWSEGSQ--PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238 + G + R L+ G+ D ++N + QKTGT + VE+ Sbjct: 123 MTAPLDDSGLRKTQRALCLMFLFCGMAFVDFAHLKKSDIRNGVLRYNRQKTGTPMLVEIQ 182 Query: 239 DGFMKLLAM----TPIGKETFFINNDKQKMNATQFS----------IWFKAKATKAGVNK 284 +LLA T F K F K A GV + Sbjct: 183 PVAKELLAALMTDTLRDSPYLFTFLSGTKTGEEAFREYTSALADFNSSLKELANACGVTE 242 Query: 285 --SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342 +++ +R AT + G + G +++ + Y K ++ N S+ Sbjct: 243 MVTSYSIRHSFATTLKEQGVPIEMISELLGHQSIKTTQIYLKSFSLDKMSAVNKACFESI 302 Query: 343 VDS 345 ++ Sbjct: 303 YNN 305 >gi|228927542|ref|ZP_04090595.1| Phage integrase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228832150|gb|EEM77734.1| Phage integrase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 317 Score = 93.9 bits (232), Expect = 3e-17, Method: Composition-based stats. Identities = 45/295 (15%), Positives = 94/295 (31%), Gaps = 52/295 (17%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQII-------------RKSGDFDYRKITTKHIRS 121 I EY + +L+ + S+E+ ++ I ++HI+ Sbjct: 7 IREYIEDRSLENLSHRTLESYENTLNEFRLWLNGCNGNEEEASSRAVTHVEDIKSQHIKD 66 Query: 122 GVE----SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAI--NPCLSVERPKRKTEGIRPWT 175 + R ++ ++ LT+++V F + ++ + NP L V+ P++ T T Sbjct: 67 YMRYCYKERSNSHTTVAGKLTNLKVYFNYLAQEGLIEERNNPTLRVKNPRKDTNV-ETLT 125 Query: 176 KED-------------MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222 +E + F + + FLL +G R + + + Sbjct: 126 EEQIRLILRHLRRRRRVDDFYHY-----RDYTLVVFLLGTGARLGEIMDLRWEDIDLKAG 180 Query: 223 SIKTQKTGTIIT----------VELPDGFMKLLAMTPIGKETFFINND-KQKMNATQFSI 271 + TG T + + + L G + +KM+ + Sbjct: 181 QVVFPDTGKARTQQGQPLGAKLISELKDYKQYLENDTYGLPAYLFTTRTGRKMSREAIKL 240 Query: 272 WFKAKATKAGVN---KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 F A + SAH +R F + AG + + ++ Y Sbjct: 241 VFVRLAQELNFKSGRVSAHSLRHFYCSSLIKAGVSPFVVQKLMRHSKIETTMKYV 295 >gi|291282710|ref|YP_003499528.1| Integrase family protein [Escherichia coli O55:H7 str. CB9615] gi|290762583|gb|ADD56544.1| Integrase family protein [Escherichia coli O55:H7 str. CB9615] Length = 431 Score = 93.9 bits (232), Expect = 3e-17, Method: Composition-based stats. Identities = 44/317 (13%), Positives = 97/317 (30%), Gaps = 64/317 (20%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK-ITTKHIRSGVESR-- 126 T+K L ++ +A S ++ + I+ G+ + I + + + + Sbjct: 85 TIKELAEKFLALKE-TEVAKTSLNTYRAVIKNILSIIGEKNLASSINKEKLLAVRKELLT 143 Query: 127 --------------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172 + + ++T++ +F++ V Y+ NP + K Sbjct: 144 GYQIPKSNYIVTQPGRSAVTVNNYMTNLYAVFQFGVDNGYLTDNPFKGISPLKESRTIPD 203 Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIK----- 225 P ++E+ + Q + + +Y+G+R + C G + + N I+ Sbjct: 204 PLSREEFIRLIDAC-RNQQAKNLWCVSVYTGIRPGELCALGWEDIDLKNGTMMIRRNLAK 262 Query: 226 --------TQKTGTIITV--ELPDGFMKLLAMTPIGKETFF------------------- 256 T +I + D + +T + KE Sbjct: 263 DRFTVPKTQAGTNRVIHLIKPAIDALRSQMTLTRLSKEHIIDVHLREFGRTEKQKCTFVF 322 Query: 257 -------INNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELM 308 + N + A +AG+ ++ ++ R A S AGA + Sbjct: 323 QPEVSARVKNYGDHFTVDSIRQMWDAAIKRAGLRHRKSYQSRHTYACWSLTAGANPAFIA 382 Query: 309 ATYGWKTVDQA-ETYTK 324 G + Y K Sbjct: 383 NQMGHADAQMVFQVYGK 399 >gi|255520384|ref|ZP_05387621.1| integrase [Listeria monocytogenes FSL J1-175] Length = 381 Score = 93.9 bits (232), Expect = 3e-17, Method: Composition-based stats. Identities = 45/294 (15%), Positives = 96/294 (32%), Gaps = 49/294 (16%) Query: 84 WGSLAVNSRISFESYFDQ--------IIRKSGDFDYRKITTKHIRSGVESR-KHTPSSAI 134 + L + ++ ES ++ I+ D KI + + + K P+S Sbjct: 77 FTWLELYTQTVKESTLERTKIFFNHHILPVFSDKFIDKIDIHFCQQVINTWSKSNPASYK 136 Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSV-----ERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 + +FK+A+ + +P V E +++ + I + K +++ F + Sbjct: 137 RLKNLTSRVFKYAISLHLIENDPFAFVVVPRGEMIEKEEKDITFYDKYELRSFLDTVKDD 196 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----------------IFSIKTQKTGT-I 232 + F L ++GLR S++ + N + T KT Sbjct: 197 TFKYTFFYLLAFTGLRKSEALALTWNDVDLNNKRLYVNKTLSRGEHARILVNTTKTKAGK 256 Query: 233 ITVELP----DGFMKLL-------AMTPIGKETFFINNDK----QKMNATQFSIWFKAKA 277 + + D K + + K +N+ + FK Sbjct: 257 RDISIDASTVDVLKKWKSYQRGNHHILRLDKVQIIFDNEGNYYNPSSTYSWLDNIFKHHT 316 Query: 278 TKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIR 330 + ++HG R A++ +AGA+ ++ G + YT + Sbjct: 317 ELKKI--TSHGFRHTHASLLFEAGASLKDVQERLGHADIQTTSNIYTHVTQEKK 368 >gi|237744716|ref|ZP_04575197.1| conserved hypothetical protein [Fusobacterium sp. 7_1] gi|229431945|gb|EEO42157.1| conserved hypothetical protein [Fusobacterium sp. 7_1] Length = 329 Score = 93.9 bits (232), Expect = 3e-17, Method: Composition-based stats. Identities = 34/262 (12%), Positives = 87/262 (33%), Gaps = 14/262 (5%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS- 132 + + + H + S +++ + + +K + + ITT +R +++ + ++ Sbjct: 54 YLEAFLSAKHVEGCSRKSLKYYKATIENLFKKI-EKSIKHITTNDLREYLDNYQKEGNAS 112 Query: 133 ---AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 F W ++Y+ +P + + K T ++ E M+ + Sbjct: 113 KITIDNIRRIFSSFFAWLEEEDYILKSPVRRIHKVKTGTVVKETYSDEAMEIMRDNCRS- 171 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDG----FMKL 244 + + L +G+R + + ++ + + K V Sbjct: 172 LRDLAIIDILASTGMRVGELVKLNIEDIDFEGRECVVFGKGDKERKVYFDARTKIHLHNY 231 Query: 245 LAMTPIGKETFFIN--NDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAG 301 L F++ +++ + I + K + K H R+ AT + D G Sbjct: 232 LKTRDDDNSALFVSLLKPHKRLQISGVEIMLRQLGRKLNITKVHPHKFRRTLATKAIDKG 291 Query: 302 ATAHELMATYGWKTVDQAETYT 323 ++ G + +D Y Sbjct: 292 MPIEQVQQLLGHQKIDTTLQYA 313 >gi|13095744|ref|NP_076635.1| integrase [Lactococcus phage bIL286] gi|15673415|ref|NP_267589.1| integrase [Lactococcus lactis subsp. lactis Il1403] gi|12724422|gb|AAK05531.1|AE006373_10 prophage pi3 protein 60, integrase [Lactococcus lactis subsp. lactis Il1403] gi|12830933|gb|AAK08288.1|AF323669_1 integrase [Lactococcus phage bIL286] Length = 359 Score = 93.9 bits (232), Expect = 3e-17, Method: Composition-based stats. Identities = 41/338 (12%), Positives = 108/338 (31%), Gaps = 28/338 (8%) Query: 13 KERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR-KKPTTL 71 + ++G Y F+ G++ E + A +E I++P K T Sbjct: 5 AYKKKNGTTAYKFKAYIGKKNGKSQYAEKSGFKTKADARAALHNIQEEIDNPTPKSSMTF 64 Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131 K L E+ + ++ ++ G T +++ Sbjct: 65 KELYDEWLLVYEKEVQNSTYYKTTRAFEKHVLPVIGSTKLSDFTPMELQNFRNDLSEKLK 124 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCL-----SVERPKRKTEGIRPWTKEDMQQFKSFW 186 A + +R +F A Y+ NP L +++ + + ++++ F + Sbjct: 125 FARKLFGMVRKVFNHAALLSYIQANPALPVTSQGIKKKVEEKKDFY--DTDELRDFMALV 182 Query: 187 SEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244 + + + F L ++G+R + + + + I + + + E+ Sbjct: 183 EKTNDIKKIALFRILAFTGIRKGELLALEWKDYRKSTLDINKAISHSPVGYEILPPKANS 242 Query: 245 LAMTPIGKET----------------FFINNDKQKMNATQFSIWFKAKATKAGV-NKSAH 287 + + ++T F + + ++ ++ W + + H Sbjct: 243 NRLLSLDEKTCKILDELHQTYPESTRIFESENGGMLSPSKPRKWLLEITKEKEIEPIRIH 302 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTK 324 R A++ ++G + ++ G + YT Sbjct: 303 AFRHTHASLLFESGMSLKQVQYRLGHADLKTTMNIYTH 340 >gi|323486907|ref|ZP_08092223.1| hypothetical protein HMPREF9474_03974 [Clostridium symbiosum WAL-14163] gi|323691955|ref|ZP_08106204.1| integrase [Clostridium symbiosum WAL-14673] gi|323399770|gb|EGA92152.1| hypothetical protein HMPREF9474_03974 [Clostridium symbiosum WAL-14163] gi|323503964|gb|EGB19777.1| integrase [Clostridium symbiosum WAL-14673] Length = 350 Score = 93.9 bits (232), Expect = 3e-17, Method: Composition-based stats. Identities = 42/255 (16%), Positives = 85/255 (33%), Gaps = 29/255 (11%) Query: 110 DYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE 169 +Y + H E +T ++ + S++ + + R E + NP V+ PK + Sbjct: 89 EYMEFLKCHSTEKREDLVNTERGIMRKIASLKSFYNYFYRHERIKNNPAALVQLPKLHEK 148 Query: 170 GIRPWTKEDMQQFKSFWSEGS---------------QPRLAFEFLLYSGLRCSDSCRAGV 214 I +++ G+ + LL +G+R S+ + Sbjct: 149 EIIRLEVDEVASLLDQVEAGAQLTEKQKAFHAKTKIRDLALMTLLLGTGIRVSECVGLNI 208 Query: 215 QHLQNNIFSIKT-QKTGTIITV----ELPDGFMKLLA------MTPIGKETFFINNDKQK 263 + N I+ +K G + V E+ D +A P ++ F++ K++ Sbjct: 209 NDVDFNTGGIRIHRKGGKEVIVYFGAEVEDALADYMAERKHITPEPGHEDALFLSLQKKR 268 Query: 264 MNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-E 320 +N K A + H +R T + + G + V+ + Sbjct: 269 LNVRSVENLVKKYAKIVTPLKKITPHKLRSTYGTNLYRETGDIYLVADVLGHEDVNTTKK 328 Query: 321 TYTKGADRIRLGIKN 335 Y D R +N Sbjct: 329 HYAALEDERRRSARN 343 >gi|317486732|ref|ZP_07945549.1| phage integrase [Bilophila wadsworthia 3_1_6] gi|316922115|gb|EFV43384.1| phage integrase [Bilophila wadsworthia 3_1_6] Length = 363 Score = 93.9 bits (232), Expect = 3e-17, Method: Composition-based stats. Identities = 66/343 (19%), Positives = 118/343 (34%), Gaps = 33/343 (9%) Query: 9 PFVTKER--TRHGKIIYYFR---KGHGRRIRLPYPHESTFIPA-YMSALTGSTPKREY-- 60 P V + R+GK F + R+I +S + A Y S + G K Sbjct: 10 PGVYERVLIDRNGKADVAFDIAYRHDSRKIWETVGRKSEGVNASYASRIRGERLKHIEDN 69 Query: 61 -INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119 +P P T K + G + + + + II GD KI HI Sbjct: 70 NFVAPGNVP-TFKQAAHRFLTVHMAGKASAKNMTGYLEH--HIIPIFGDARMDKIRPMHI 126 Query: 120 R---SGVESRKHTPSSAIQFLTSMRVLFKWAVRQE-YVAINPCLSVERPKRKTEGIRPWT 175 ++++ +P + + +R +++ A YV P V+ P + +R T Sbjct: 127 EELKKAIQNKGLSPQTEKHVIGFVRQVYRKAKLWGVYVGSIPTEGVQLPAVDSARLRFLT 186 Query: 176 KEDMQQFKSFWSEGSQP-RLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTI 232 +++ + + S LY+G+R + V H+ I ++ K GT Sbjct: 187 EKEARILLDELKKRSPQWHDIAYVSLYTGMRLREVLSLKVGHVNIAARIINVMDAKAGTR 246 Query: 233 ITVELPDGFMKLLAMTPIGKET---FFINNDKQKMNATQFSIWFKAKA--------TKAG 281 + + ++ GK+T F + S FK A T A Sbjct: 247 AA-YMNEEVQRIFLRRCDGKDTEGFVFEQKGGGHIRY--ISSAFKRTADMLFNEGITDAR 303 Query: 282 VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R + A G + + G T++ + Y+K Sbjct: 304 YKVVFHTLRHTFGSWLAQKGVPLYTIAELMGHSTLEMTKRYSK 346 >gi|262204532|ref|YP_003275740.1| integrase family protein [Gordonia bronchialis DSM 43247] gi|262087879|gb|ACY23847.1| integrase family protein [Gordonia bronchialis DSM 43247] Length = 608 Score = 93.9 bits (232), Expect = 3e-17, Method: Composition-based stats. Identities = 48/274 (17%), Positives = 88/274 (32%), Gaps = 31/274 (11%) Query: 86 SLAVNSRISFESYFDQIIRKSGDFDYR-----KITTKHIRSGVESRKHTPS--------- 131 SL N+ E + D + ++ HI + TP+ Sbjct: 225 SLRPNTVTGIEHDLRRFGSWLTDTHPQIANCAELQRVHIEEFKKWLSTTPTPRTGKPLNR 284 Query: 132 -SAIQFLTSMRVLFKWAVRQEY--VAINPCLSV-ERPKRKTEGIRPWTKEDMQQFKSFWS 187 S L ++ F +Y + P + + + P R + Sbjct: 285 GSIKNALINLHCFFDRITDWDYPNAPVRPLVFIGDLPIIDKPLPRFLDDGAATKLLRAAR 344 Query: 188 EGSQP--RLAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVELPDGF 241 + P RL E L +G+R S+ + I K + L Sbjct: 345 ADTDPLSRLIVELLARTGIRISELLGLTTDAVVQIGTAFWLRIPLGKMHNDRYIPLHPQL 404 Query: 242 MKLLA-----MTPIG-KETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSA 294 +LL P G + + + + + + + + + A AG+ +AH +R A Sbjct: 405 KELLDDWIDNHRPTGIRTSRLLVENHRPITSHRVTAALDRHAEAAGIGHVTAHQLRHTLA 464 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADR 328 T + + G + + A G KT+ Y + ADR Sbjct: 465 TQAINRGMSLDAIAALLGHKTLAMTMVYARIADR 498 >gi|319641868|ref|ZP_07996545.1| transposase [Bacteroides sp. 3_1_40A] gi|317386541|gb|EFV67443.1| transposase [Bacteroides sp. 3_1_40A] Length = 407 Score = 93.9 bits (232), Expect = 3e-17, Method: Composition-based stats. Identities = 42/267 (15%), Positives = 93/267 (34%), Gaps = 27/267 (10%) Query: 85 GSLAVNSRISFESYF----DQIIRKSGDFD--YRKITTKHIRSGVESRKHTP----SSAI 134 +A + +E+ D + D +++ + + K + ++A Sbjct: 128 TDMAPATVQRYETSLKHTQDFVWETYHKKDILLDEVSRQFVEDYEFWLKTSKKCCHNTAT 187 Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQ 191 ++L + + + + A+ + ++ +P L + R ++++ S Q Sbjct: 188 KYLKNFKKIIRIALAKGWMKNDPFLEI-RFSLDKVEPDFLEDSEIRKLISKEIDIPRLGQ 246 Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNN-----IFSIKTQKTGTIITVELPDGFMKLLA 246 R F F ++GL SD G +H+ + QKT + + L + +K+L Sbjct: 247 VRDIFVFCCFTGLAFSDIHGLGKEHIVEDSNGVRWIRKGRQKTKIMCNIPLMEVPLKILE 306 Query: 247 MTPIGKETFFINNDK---QKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADAG 301 + + + + + + K A G+ K+ H R AT + G Sbjct: 307 KYSTNE---YCRKHGVLFPVLCNQKMNAYLKELADICGIKKTLTTHVARHTFATFALANG 363 Query: 302 ATAHELMATYGWKTVDQAETYTKGADR 328 + + G V Y + DR Sbjct: 364 VSIESVAKMLGHTNVQMTRHYARVLDR 390 >gi|293414529|ref|ZP_06657178.1| integrase for prophage CP-933O [Escherichia coli B185] gi|291434587|gb|EFF07560.1| integrase for prophage CP-933O [Escherichia coli B185] Length = 376 Score = 93.9 bits (232), Expect = 3e-17, Method: Composition-based stats. Identities = 61/369 (16%), Positives = 117/369 (31%), Gaps = 48/369 (13%) Query: 7 LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKR-------- 58 L P+ K R+ K+ + +R + + + ++ Sbjct: 14 LSPYFDK---RNNKVYWRYRHPITGKNHGLGSIDQKLAETIAAEANSRLARQQMEQMLSL 70 Query: 59 -EYINSPRKKPTTLKWLISEYRKS----AHWGSLAVNSRISFESYFDQIIRKSGDFDYRK 113 E I S +T+ ++ YRK G + +++ + + G Sbjct: 71 QEKIISDTGGASTVSIFLNNYRKIQQERYENGEIKLSTLKQKAAPLRVFDERFGARPLDA 130 Query: 114 ITTKHIRSGVESRKHTPSSAIQ--FLTSMRVLFKWAVRQEYVA--INPCLSVERPKRKTE 169 IT K + S +E K + + F + +F+ A + V NP S ++P+ + Sbjct: 131 ITVKDVVSVLEEYKAKGHNRMGQIFRKVLIDVFREAQQTGDVPPGFNPAESAKKPQVRIS 190 Query: 170 GIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229 R E M + + +G + L +G R SD C+ +++ ++ QKT Sbjct: 191 RQRLTFDEWMMIYNAAEKDGYFLQRGMLLALMTGQRLSDICKMQFSDIRDGYLHVEQQKT 250 Query: 230 GTIITVELP---DGFMKLLAMTPIGKETFFIN-------------NDKQKMNATQFSIWF 273 G I + L D L + ++ + ++ F Sbjct: 251 GARIAIPLALRCDKLNLTLGDVVSSCRDYILSPWLLHHHHAKGMGKRGGMVKPATLTVAF 310 Query: 274 KAKA-------TKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY--TK 324 K G S H R S + + G L G + Y + Sbjct: 311 KKARDSVDYNWRANGTPPSFHEQRSLSERLFREQGIDTKIL---LGHSNQKMTDIYNDAR 367 Query: 325 GADRIRLGI 333 G + +L I Sbjct: 368 GKEWKKLVI 376 >gi|289643686|ref|ZP_06475798.1| integrase family protein [Frankia symbiont of Datisca glomerata] gi|289506519|gb|EFD27506.1| integrase family protein [Frankia symbiont of Datisca glomerata] Length = 413 Score = 93.9 bits (232), Expect = 3e-17, Method: Composition-based stats. Identities = 52/365 (14%), Positives = 119/365 (32%), Gaps = 61/365 (16%) Query: 10 FVTKERTRHGKIIYYFR-KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68 ++ + HG++ R G R + E+ + +P Sbjct: 19 YLGADGVWHGRVTVGVRDNGKPDRRHVRAKTETEVTRKVRKL---EQERDAGTVRKPGRP 75 Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRK 127 T++ ++ + ++ S++ N+ + ++ G ++ +HI S + + Sbjct: 76 WTVERWLTHWVENISAPSVSENTSDGYRVAVRVHLVPGLGAHRLERLEPEHIESLMRRMQ 135 Query: 128 HT---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 + P++A Q L ++R AVR+ +V N + P+ + + P++ ++QQ + Sbjct: 136 ASGSAPATAHQALRTLRTALGEAVRRGHVGRNAAALAKPPRVVEQEVEPYSVAEVQQLLT 195 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTI------------ 232 ++ + + L GLR ++ + + I+ ++ Sbjct: 196 EAAK-RRNSARWVLALALGLRQGEALGLRWADVDLDAGVIRVRRGRLRPKYRHGCVEPCG 254 Query: 233 -------------------------ITVELPDGFMKLLAMTP--------------IGKE 253 + LPD +++L + Sbjct: 255 RKPGFCPNKVQIRPDTKETKSRAGTRPIGLPDELVEILRRHKERQDKERAEAGDLWVDGG 314 Query: 254 TFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYG 312 F + +N +KA AG+ + H R +AT+ G +M G Sbjct: 315 WLFATETGRPLNPGTDYHAWKALVVAAGLRDARLHDARHTAATVLLLLGVPDRTVMGIMG 374 Query: 313 WKTVD 317 W T Sbjct: 375 WSTDQ 379 >gi|144898165|emb|CAM75029.1| Phage integrase [Magnetospirillum gryphiswaldense MSR-1] Length = 387 Score = 93.9 bits (232), Expect = 3e-17, Method: Composition-based stats. Identities = 62/311 (19%), Positives = 120/311 (38%), Gaps = 26/311 (8%) Query: 50 ALTGSTPKREYINSPRKKPTTLKWLI-SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD 108 AL+G + + R P T K + +Y A + + + S ++I G Sbjct: 84 ALSGDPAGDK--DKHRAVP-TFKAFVTEQYLPFAKDRLRSYSDQESMCRL--RLIPTWGA 138 Query: 109 FDYRKITTKHIRSGVESRKH---TPSSAIQFLTSMRVLFKWAVRQE-YVAINPCLSVERP 164 +I T I + +PS+ + + + +F A+R + Y NPC VE Sbjct: 139 KRLDEIRTTDIVELQRRLRDENLSPSTVNRHVALAKRVFNLALRWQAYEGRNPCQHVE-F 197 Query: 165 KRKTEGIRPWTKEDMQQ-FKSFWSEGSQ-PRLAFEFLLYSGLRCSDSCRAGVQHLQNNIF 222 R+ + R T ++M++ F++ E S+ L +G R S++ A + Sbjct: 198 AREHQRERFLTPDEMRRLFQALDDEPSRSAANCIALLALTGARKSEALNARFDDIDLPNR 257 Query: 223 SIKT----QKTGTIITVELPDGFMKLLAMTPIGKETFFIN----NDKQKMNATQFSIWFK 274 K+G + + L + +KLL P + ++ +D N + K Sbjct: 258 VWTVPASRSKSGKVRRIPLSEAAVKLLVGLPPEPDCPWLFPNAASDGPIENIRRCWNRLK 317 Query: 275 AKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR----IR 330 A AT + H +R A++ +G + + + G + + Y+ ++ Sbjct: 318 AAATLPS-DTRPHDLRHSFASLLVGSGQSLYSVQTILGHASPNMTARYSHLSNTSLVDRV 376 Query: 331 LGIKNSRRISS 341 LGI+ S R + Sbjct: 377 LGIQASDRAGA 387 >gi|323486023|ref|ZP_08091354.1| phage integrase [Clostridium symbiosum WAL-14163] gi|323400590|gb|EGA92957.1| phage integrase [Clostridium symbiosum WAL-14163] Length = 359 Score = 93.9 bits (232), Expect = 3e-17, Method: Composition-based stats. Identities = 53/355 (14%), Positives = 113/355 (31%), Gaps = 52/355 (14%) Query: 7 LPPFVTKERTRHGKIIYYF------RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY 60 +P + K + GK ++Y G + I Y + Sbjct: 1 MPAY--KYTLKSGKTLWYANFYYTDWTGEKKHICKRGFKTQREAKDYERSFLDQQSSSSD 58 Query: 61 INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHI 119 I L++ Y + L + + D +++ G I T + Sbjct: 59 ILFSS--------LVANYLEDME-HRLKPTTMENKRFIIDTKLLPYFGKQKICDIDTIKV 109 Query: 120 RSGVESR------KHTPSSAIQFLTS---MRVLFKWAVRQEYVAINPCLSVE-RPKRKTE 169 R P S T + + +AV + +NPC + K K + Sbjct: 110 RKWQNELISYRDDDGKPFSQTYLKTVNNQLSAIMNYAVSHYRLPVNPCRAAGSMGKSKAD 169 Query: 170 GIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL------------ 217 + WT+++ ++F + S+ S +LAF+ L Y+G+R + + Sbjct: 170 EMNIWTQKEYERFSNAISK-SSMKLAFDILFYTGMRSGELLALTPADILSSKRIDINKNY 228 Query: 218 ---QNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQK---MNATQFSI 271 + ++ + + +PD + + + + T Sbjct: 229 AKIKGEELFLEPKTPKAKRCISIPDFLYDDIQEYISK---LYGIGNGDRIFYFQKTALEK 285 Query: 272 WFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324 K + + G+ H +R A++ + G T E+ G +++ +TY+ Sbjct: 286 EMKRVSERIGLKPIRVHDLRHSHASMLIELGFTPLEIAERLGHESIKTTLDTYSH 340 >gi|167757961|ref|ZP_02430088.1| hypothetical protein CLOSCI_00297 [Clostridium scindens ATCC 35704] gi|167664393|gb|EDS08523.1| hypothetical protein CLOSCI_00297 [Clostridium scindens ATCC 35704] Length = 349 Score = 93.9 bits (232), Expect = 3e-17, Method: Composition-based stats. Identities = 46/269 (17%), Positives = 89/269 (33%), Gaps = 22/269 (8%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESR---- 126 +LI YR LA + + ++I + D +I + E+R Sbjct: 66 YLIDLYRLKK--SRLAKETMDQYIGAITRLITQVDKPLTDIDEIDIDYYLRYYENRNVKN 123 Query: 127 ---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 K+ S+ + F W ++++V NP VE + + + I + M++ + Sbjct: 124 NRGKNQASTCNNERRYLSAFFTWLRKEKFVTYNPVECVEPKRERRKPIDYFRPGQMEELR 183 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDG- 240 + R E L +G R + + +I +K G + L + Sbjct: 184 EGC-ITLRDRALVEALRSTGARVGEIVPINRDDIDWNTGDVTILGEKGGRYRVIYLDEVA 242 Query: 241 ---FMKLLAMTPIGKETFFI--NNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFS 293 K L E F+ + +++ T K A +AG+ H +RK Sbjct: 243 RYHLRKYLESRKDENEALFVWERSPHNRLDKTGIRASLKTIAGRAGLKCRVYPHKMRKTL 302 Query: 294 ATISADAGATAHELMATYGWKTVDQAETY 322 + G ++ G + Y Sbjct: 303 GMQLKNQGVDIGDIQEILGHSNPNVTSRY 331 >gi|293433570|ref|ZP_06661998.1| phage integrase family site specific recombinase [Escherichia coli B088] gi|291324389|gb|EFE63811.1| phage integrase family site specific recombinase [Escherichia coli B088] Length = 376 Score = 93.9 bits (232), Expect = 3e-17, Method: Composition-based stats. Identities = 61/377 (16%), Positives = 116/377 (30%), Gaps = 64/377 (16%) Query: 7 LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKR-------- 58 L P+ K R+ K+ + +R + + + ++ Sbjct: 14 LSPYFDK---RNNKVYWRYRHPITGKNHGLGSIDQKLAETIAAEANSRLARQQMEQMLSL 70 Query: 59 -EYINSPRKKPTTLKWLISEYRKS----AHWGSLAVNSRISFESYFDQIIRKSGDFDYRK 113 E I + +T+ ++ YRK G + +N+ + + G Sbjct: 71 QEKIINDTGGSSTVSIFLNNYRKIQQERYENGEIKLNTLKQKAAPLRVFDERFGTRPLNA 130 Query: 114 ITTKHIRSGVESRKHTPSSAIQ--FLTSMRVLFKWAVRQEYVA--INPCLSVERPKRKTE 169 IT K + S +E K + + F + +F+ A + V NP S ++P+ Sbjct: 131 ITVKDVVSVLEEYKSRGHNRMGQIFRKVLIDVFREAQQTGDVPPGFNPAESAKKPQV-RI 189 Query: 170 GIRPWTKEDMQQ-FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228 + T ++ + + +G + L +G R SD C+ +++ ++ QK Sbjct: 190 SRQRLTFDEWTMIYNAAEKDGYFLQRGMLLALMTGQRLSDICKMQFSDIRDGYLHVEQQK 249 Query: 229 TGTIITVE-----------------------LPDGFMKLLAMTPIGKETFFINNDKQKMN 265 TGT I + L + GK + Sbjct: 250 TGTRIAIPLALRCDKLNLTLDDVVSSCRDCVLSPWLLHHHHAKGTGK-------RGGMVK 302 Query: 266 ATQFSIWFKAKA-------TKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318 +I FK G S H R S + + G L G Sbjct: 303 PATLTIAFKKARDSVDYNWRANGTPPSFHEQRSLSERLFREQGIDTKIL---LGHSNQKM 359 Query: 319 AETY--TKGADRIRLGI 333 + Y +G + +L I Sbjct: 360 TDIYNDARGKEWKKLVI 376 >gi|227823634|ref|YP_002827607.1| site-specific tyrosine recombinase XerC [Sinorhizobium fredii NGR234] gi|227342636|gb|ACP26854.1| tyrosine recombinase XerC [Sinorhizobium fredii NGR234] Length = 310 Score = 93.9 bits (232), Expect = 3e-17, Method: Composition-based stats. Identities = 47/284 (16%), Positives = 80/284 (28%), Gaps = 29/284 (10%) Query: 76 SEYRKS-AHWGSLAVNSRISFESYFDQIIRKS-GDF-------DYRKITTKHIRSGVESR 126 + S A L+ + ++E Q + G D R + +R + R Sbjct: 17 HRWLASLAEERRLSEKTIEAYERDTRQFLTFLTGHLAGPPRLADIRTLRPADLRGFLAQR 76 Query: 127 KHTPSSAIQF---LTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM---- 179 + + A L +R ++ + +V PK+ +P T D Sbjct: 77 RKAGAGARTLGRGLAGLRSFLRYLEKHGLANAAGAGAVRSPKQPKSLPKPLTDRDALEVV 136 Query: 180 ---QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236 Q ++ L GLR S++ T K G V Sbjct: 137 TADAQLAEEPWIAARNAAVLTLLYGCGLRISEALDLTPDDFSGAASLRITGKGGKTRIVP 196 Query: 237 LPDGFMKLLAMT-------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAH 287 L +A E F K+ + + G+ + H Sbjct: 197 LIAAATGAVATYRKLCPYHIGPGEPIFRGARGAKLQPAIIQREMQKLRSALGLPDSATPH 256 Query: 288 GVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 +R AT G + G ++ + YT G D RL Sbjct: 257 ALRHSFATHLLAGGGDLRTIQELLGHASLSTTQVYT-GVDSARL 299 >gi|209918891|ref|YP_002292975.1| putative phage integrase [Escherichia coli SE11] gi|209912150|dbj|BAG77224.1| putative phage integrase [Escherichia coli SE11] Length = 431 Score = 93.9 bits (232), Expect = 3e-17, Method: Composition-based stats. Identities = 45/317 (14%), Positives = 98/317 (30%), Gaps = 64/317 (20%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK-ITTKHIRSGVESR-- 126 T+K L ++ +A S ++ + I+ G+ + I + + + + Sbjct: 85 TIKELAEKFLALKE-TEVAKTSLNTYRAVIKNILSIIGEKNLASSINKEKLLAVRKELLT 143 Query: 127 --------------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172 + + ++T++ +F++ V Y+A NP + K Sbjct: 144 GYQIPKSNYIVTQPGRSAVTVNNYMTNLYAVFQFGVDNGYLADNPFKGISPLKESRTIPD 203 Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIK----- 225 P ++E+ + Q + + +Y+G+R + C G + + N I+ Sbjct: 204 PLSREEFIRLIDAC-RNQQAKNLWCVSVYTGIRPGELCALGWEDIDLKNGTMMIRRNLAK 262 Query: 226 --------TQKTGTIITV--ELPDGFMKLLAMTPIGKETFF------------------- 256 T +I + D + +T + KE Sbjct: 263 DRFTVPKTQAGTNRVIYLIKPAIDALRSQMTLTRLSKEHIIDVHLREFGRTEKQKCTFVF 322 Query: 257 -------INNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELM 308 + N + A +AG+ ++ ++ R A S AGA + Sbjct: 323 QPEVSARVKNYGDHFTVDSIRQMWDAAIKRAGLRHRKSYQSRHTYACWSLTAGANPAFIA 382 Query: 309 ATYGWKTVDQA-ETYTK 324 G + Y K Sbjct: 383 NQMGHADAQMVFQVYGK 399 >gi|331085647|ref|ZP_08334730.1| hypothetical protein HMPREF0987_01033 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330406570|gb|EGG86075.1| hypothetical protein HMPREF0987_01033 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 322 Score = 93.9 bits (232), Expect = 3e-17, Method: Composition-based stats. Identities = 35/265 (13%), Positives = 87/265 (32%), Gaps = 15/265 (5%) Query: 88 AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH----TPSSAIQFLTSMRVL 143 + + + D++++K RKI+T+ IR + + + + ++ Sbjct: 61 SERTIQYYSVTVDKMLQKI-QTPVRKISTEEIRKYLVDYQKINDCSKVTVDNVRRNISSF 119 Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSG 203 F W ++Y+ +P + + K K + E ++ + + + L +G Sbjct: 120 FSWLEEEDYILKSPMRRIHKIKTKQPVKEIISDEAIEMLRDHCQCP-RDLAMIDLLYSTG 178 Query: 204 LRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDG----FMKLLAMTPIGKETFFIN 258 +R + + + + K V + L+ F+ Sbjct: 179 IRVGELVNLNISDVDFEARECVVFGKGDKERRVYFDAKAKLHLLNYLSERKDNNPALFVT 238 Query: 259 --NDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKT 315 ++ + I + K + K H R+ AT + D G ++ G Sbjct: 239 LDAPYDRLKISGVEIRIRTLGRKLNMEKIHPHKFRRTMATRAIDKGMPIEQVQKLLGHSQ 298 Query: 316 VDQAETYTKGADRIRLGIKNSRRIS 340 +D Y ++ + + + I+ Sbjct: 299 IDTTMQYA-IVNQTNVKTSHQKFIA 322 >gi|206602617|gb|EDZ39098.1| Putative phage integrase [Leptospirillum sp. Group II '5-way CG'] Length = 346 Score = 93.9 bits (232), Expect = 3e-17, Method: Composition-based stats. Identities = 50/335 (14%), Positives = 113/335 (33%), Gaps = 33/335 (9%) Query: 17 RHGKIIYYFR-KGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75 + G + + + + G ++ + + + + +++ + TTL + Sbjct: 6 KRGDLQWRVKIRRRGFPLQTRTFNTKAEAETWARLIETEMDRGSFVDRSEAENTTLSDAL 65 Query: 76 SEYRKSAHWGSLAVNSRISFE---SYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSS 132 Y + ++ + + S++ + G +I I + R ++ Sbjct: 66 DRYAR-----EISPHKKGSYQELCRIENLKTHPLGKRFIAQIRGSDIALYRDERLKKVAA 120 Query: 133 AIQFLT--SMRVLFKWAVRQEYVA---INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 A L + LF+ A R+E+ NP V PK+ R + ++ Sbjct: 121 ATVRLELAIISHLFEIA-RKEWGMESLSNPVRIVNLPKKSESRDRRLLYGEEEKLLESCD 179 Query: 188 EGSQPRLAFE-FLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQKTGTIITVELPDGFMKL 244 A L +G+R + +H+ N I K G +V L +++ Sbjct: 180 IYGGDLPAIVRIALETGMRRGEIVGMTWEHVDLKKNTVLIPKTKNGEKRSVPLSKKAVEI 239 Query: 245 LAMTPI--GKETFFINNDKQKMNATQFSIW-----FKAKATKAGV--------NKSAHGV 289 L G + I + A + +I ++ + + G+ + + H + Sbjct: 240 LKGLSRRIGGRVWEITEEHSVTTAFRRAISRARATYEKECQEKGIKQDPSFLVDLTFHDL 299 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 R + + + G ++ A G KT+ YT Sbjct: 300 RHEATSRFFEKGLNPMQVAAITGHKTLQMLRRYTH 334 >gi|316932246|ref|YP_004107228.1| integrase family protein [Rhodopseudomonas palustris DX-1] gi|315599960|gb|ADU42495.1| integrase family protein [Rhodopseudomonas palustris DX-1] Length = 440 Score = 93.9 bits (232), Expect = 3e-17, Method: Composition-based stats. Identities = 55/362 (15%), Positives = 105/362 (29%), Gaps = 56/362 (15%) Query: 10 FVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPR---K 66 +V + RTR G+ Y I L G + E R + Sbjct: 41 YVIQYRTR-GRSRRY-------TIGLHGVWTPETARREAKVQLGRVAQGENPAEERELDR 92 Query: 67 KPTTLKWLISEYRKSAHWG---------SLAVNSRISFESYFDQIIRKSGDFDYRKITTK 117 K T+K L +Y G A + II G+ R +T Sbjct: 93 KALTMKQLCEQYLADMQAGLILGKGGRPKKASTVEVDIGRIRRHIIPLVGNRRVRDVTKA 152 Query: 118 HIRSGVESR--------------------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINP 157 + + + + P +A + + + +F +AV+ + NP Sbjct: 153 DMNNLMRDIIAGKTRISVKTEKLRGRAIVRGGPGTATRAMGLLGGIFTYAVQLGIIEHNP 212 Query: 158 CLSVERPKRKTEGIRPWTKED---MQQFKSFWSEGSQPRL---AFEFLLYSGLRCSDSCR 211 +++PK K R ++ + + + + + + R+ + + +G R ++ Sbjct: 213 THGLKKPKYKVRDRR-LSEAEYRTLGEILARARKSDRYRIHAEILQLIAVTGCRKTEIVE 271 Query: 212 AGVQ--HLQNNIFSIKTQKTGTIITVELPDGFMKL----LAMTPIGKETFFINNDKQKMN 265 + + + K G + P G + F Sbjct: 272 LKWSEVDFEGSCLRLSDSKEGASVR---PIGLSAINFLEKRHAHRTGTYVFPGQSDDNAV 328 Query: 266 ATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 W K + + H +R A+I+ D G T + A G Y Sbjct: 329 GNFPQSWKKLFTESPLWDVTPHVLRHSFASIANDLGFTEITIAALIGHAKGSVTSKYVHT 388 Query: 326 AD 327 D Sbjct: 389 LD 390 >gi|310813968|gb|ADP30794.1| IntI1 [Providencia rettgeri] Length = 313 Score = 93.9 bits (232), Expect = 3e-17, Method: Composition-based stats. Identities = 42/305 (13%), Positives = 94/305 (30%), Gaps = 62/305 (20%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHT 129 ++ + R+ + ++ + ++ ++ IR G + + + + + RK + Sbjct: 16 VLDQLRERIRYLHYSLRTEQAYVNWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75 Query: 130 PSSAIQFLTSMRVLFK--WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 S+ Q L ++ + ++ + RP+ T +++ + F Sbjct: 76 VSTHRQALAALLFFYGKVLCTDLPWLQ-----EIGRPRPSRRLPVVLTPDEVVRILGFL- 129 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQKTGTIITVELPDGFMKLL 245 EG RL + L +G+R S+ + V+ + ++ K + LP+ L Sbjct: 130 EGEH-RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSL 188 Query: 246 AMTPIGKETFFINN---------------------------------------------D 260 +++ + Sbjct: 189 REQLSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVR 248 Query: 261 KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318 + M F FK +AG+ K + H +R AT +G + G V Sbjct: 249 RHHMYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVST 308 Query: 319 AETYT 323 YT Sbjct: 309 TMIYT 313 >gi|300863888|ref|ZP_07108808.1| Integrase family protein [Oscillatoria sp. PCC 6506] gi|300338109|emb|CBN53954.1| Integrase family protein [Oscillatoria sp. PCC 6506] Length = 288 Score = 93.9 bits (232), Expect = 3e-17, Method: Composition-based stats. Identities = 41/264 (15%), Positives = 86/264 (32%), Gaps = 29/264 (10%) Query: 85 GSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRV 142 + ++ + Y + + +G + + +E + S+ + +++ Sbjct: 22 HGKSKRTQSYYRLYAQRFLEFAGKPLLLVTLAEVQGFATSLEQNNLSASTQRTIMAAVKS 81 Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAFEF 198 L + + E + N V P + ++ + + + + +L + Sbjct: 82 LLSFGTKIEILPRN----VGAPLPLPKAPDTLSERLLSEIEVLTMIDLESNLRNKLIIKT 137 Query: 199 LLYSGLRCSDSCRAGVQH--LQNNIFSIKTQKTG-TIITVELPDGF---MKLLAMTPIGK 252 L Y G R S+ C +H ++NN I G TV +P ++ L Sbjct: 138 LYYGGFRVSELCALKWKHLSIRNNKGQITVTGKGIKTRTVLIPASLWVELQRLRGDSGEN 197 Query: 253 ETFFINNDKQKMNATQFSIWFKAK--------ATKAGVNK--SAHGVRKFSATISADAGA 302 E F QK + + A A + S H +R A+ + + GA Sbjct: 198 EPVF---RSQKHSHDGQGHLQREWVHKIVQAAAKPAKITGKVSPHTLRHAHASHALERGA 254 Query: 303 TAHELMATYGWKTVDQAETYTKGA 326 H + T G ++ Y Sbjct: 255 KIHLVSETLGHSSIAITSRYLHAQ 278 >gi|86137451|ref|ZP_01056028.1| site-specific recombinase, phage integrase family protein [Roseobacter sp. MED193] gi|85825786|gb|EAQ45984.1| site-specific recombinase, phage integrase family protein [Roseobacter sp. MED193] Length = 367 Score = 93.9 bits (232), Expect = 3e-17, Method: Composition-based stats. Identities = 66/347 (19%), Positives = 118/347 (34%), Gaps = 30/347 (8%) Query: 11 VTKERTRHGKIIYY---FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKK 67 V + + G ++ +R R +RL + A M+A+ K Sbjct: 31 VLRVGKKFGAKHWHTFVYRGSKRRMVRLGLFPHMSVRDARMAAIQAKANANAPWTPEHIK 90 Query: 68 PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKS-GDFDYRKITTKHIRSGVE-- 124 T+ L EYRK+ + + +S +D + G ++ H R Sbjct: 91 --TVADLFEEYRKA---REPKMRAWRDVQSAWDVWGEEFLGYLKLTDVSIHHGRELRNHV 145 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 S+K T + +R +F WAV + + NP ++ T R T E+ Q+ Sbjct: 146 SKKSTELRGSAVIRYIRPMFSWAVDESLIDENPWAGLKATAIATPRDRVLTNEEWQK--- 202 Query: 185 FWSEGSQPRLA--FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK-------TGTIITV 235 W + L F FL+ S R + +Q N+++I +K + V Sbjct: 203 VWGATFKDNLGAYFRFLMLSAQRKDNVASMKWDEIQGNLWTIPAEKFKATKKESAKAHEV 262 Query: 236 ELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAK-ATKAGV-NKSAHGVRKFS 293 L M++L P F + + K + A KAGV + H +R+ + Sbjct: 263 PLTPALMEILENQPKRGPFVF---GPTGLKQLRLGSREKDRLAKKAGVDDWRLHDLRRTA 319 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKG--ADRIRLGIKNSRR 338 AT + + G Y + + R + + Sbjct: 320 ATRMTENKIPRFIVERVLGHADRSVTAVYDRANYREEKRQALNELSK 366 >gi|254168847|ref|ZP_04875688.1| site-specific recombinase, phage integrase family protein [Aciduliprofundum boonei T469] gi|254169391|ref|ZP_04876219.1| site-specific recombinase, phage integrase family protein [Aciduliprofundum boonei T469] gi|197621670|gb|EDY34257.1| site-specific recombinase, phage integrase family protein [Aciduliprofundum boonei T469] gi|197622284|gb|EDY34858.1| site-specific recombinase, phage integrase family protein [Aciduliprofundum boonei T469] Length = 299 Score = 93.9 bits (232), Expect = 3e-17, Method: Composition-based stats. Identities = 33/229 (14%), Positives = 83/229 (36%), Gaps = 18/229 (7%) Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180 + + S+ ++ ++ ++ F + + L R + K P T ++++ Sbjct: 51 AELRSKGTKTTTLNYYVKALNRYFAF------RGADIKLKYYRHRTKDTIWIP-TDDEVK 103 Query: 181 QFKS----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIIT 234 + S + + + R +G+R + L N++ I+T+K+G Sbjct: 104 RILSVRWRRYDQDLRNRAMLHIAFSTGVRLGELIALNWADLDETNHLLEIRTEKSGGTRL 163 Query: 235 VELPDGFMKLL----AMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGV 289 V +P ++LL + + +++ FK +AGV K +H Sbjct: 164 VPIPPKVLELLIQYRKVRILSDPNAMFTTYGGRISNAYARKIFKEAGERAGVKKFHSHAA 223 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRR 338 R + A + G + + G ++ + Y + + + ++ Sbjct: 224 RHWRAVKWLEEGLSLETIRRLLGHSSLKSTQIYLRARSVNSIFEEVVKK 272 >gi|15609796|ref|NP_217175.1| phiRv2 prophage integrase [Mycobacterium tuberculosis H37Rv] gi|148662501|ref|YP_001284024.1| integrase [Mycobacterium tuberculosis H37Ra] gi|148823850|ref|YP_001288604.1| phiRv2 prophage integrase [Mycobacterium tuberculosis F11] gi|167967175|ref|ZP_02549452.1| integrase [Mycobacterium tuberculosis H37Ra] gi|215404625|ref|ZP_03416806.1| integrase [Mycobacterium tuberculosis 02_1987] gi|215412458|ref|ZP_03421200.1| integrase [Mycobacterium tuberculosis 94_M4241A] gi|215428087|ref|ZP_03426006.1| integrase [Mycobacterium tuberculosis T92] gi|215446918|ref|ZP_03433670.1| integrase [Mycobacterium tuberculosis T85] gi|218754399|ref|ZP_03533195.1| integrase [Mycobacterium tuberculosis GM 1503] gi|219558668|ref|ZP_03537744.1| integrase [Mycobacterium tuberculosis T17] gi|253798259|ref|YP_003031260.1| phiRv2 phage integrase [Mycobacterium tuberculosis KZN 1435] gi|254232768|ref|ZP_04926095.1| hypothetical protein TBCG_02599 [Mycobacterium tuberculosis C] gi|254365323|ref|ZP_04981368.1| hypothetical phiRv2 prophage integrase [Mycobacterium tuberculosis str. Haarlem] gi|254551713|ref|ZP_05142160.1| integrase [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260187679|ref|ZP_05765153.1| integrase [Mycobacterium tuberculosis CPHL_A] gi|289448314|ref|ZP_06438058.1| phiRv2 phage integrase [Mycobacterium tuberculosis CPHL_A] gi|289553554|ref|ZP_06442764.1| phiRv2 phage integrase [Mycobacterium tuberculosis KZN 605] gi|289570833|ref|ZP_06451060.1| phiRv2 phage integrase [Mycobacterium tuberculosis T17] gi|289746460|ref|ZP_06505838.1| integrase [Mycobacterium tuberculosis 02_1987] gi|289751310|ref|ZP_06510688.1| phiRv2 phage integrase [Mycobacterium tuberculosis T92] gi|289758787|ref|ZP_06518165.1| integrase [Mycobacterium tuberculosis T85] gi|289762830|ref|ZP_06522208.1| phiRv2 prophage integrase [Mycobacterium tuberculosis GM 1503] gi|294994246|ref|ZP_06799937.1| integrase [Mycobacterium tuberculosis 210] gi|297635270|ref|ZP_06953050.1| integrase [Mycobacterium tuberculosis KZN 4207] gi|297732266|ref|ZP_06961384.1| integrase [Mycobacterium tuberculosis KZN R506] gi|298526131|ref|ZP_07013540.1| phiRv2 prophage integrase [Mycobacterium tuberculosis 94_M4241A] gi|306776941|ref|ZP_07415278.1| phiRv2 phage integrase [Mycobacterium tuberculosis SUMu001] gi|306780842|ref|ZP_07419179.1| phiRv2 phage integrase [Mycobacterium tuberculosis SUMu002] gi|306785466|ref|ZP_07423788.1| phiRv2 phage integrase [Mycobacterium tuberculosis SUMu003] gi|306790064|ref|ZP_07428386.1| phiRv2 phage integrase [Mycobacterium tuberculosis SUMu004] gi|306798562|ref|ZP_07436864.1| phiRv2 phage integrase [Mycobacterium tuberculosis SUMu006] gi|306804424|ref|ZP_07441092.1| phiRv2 phage integrase [Mycobacterium tuberculosis SUMu008] gi|306807539|ref|ZP_07444207.1| phiRv2 phage integrase [Mycobacterium tuberculosis SUMu007] gi|306968713|ref|ZP_07481374.1| phiRv2 phage integrase [Mycobacterium tuberculosis SUMu009] gi|306973054|ref|ZP_07485715.1| phiRv2 phage integrase [Mycobacterium tuberculosis SUMu010] gi|307080762|ref|ZP_07489932.1| phiRv2 phage integrase [Mycobacterium tuberculosis SUMu011] gi|307085356|ref|ZP_07494469.1| phiRv2 phage integrase [Mycobacterium tuberculosis SUMu012] gi|313659599|ref|ZP_07816479.1| integrase [Mycobacterium tuberculosis KZN V2475] gi|81556700|sp|P71956|INT2_MYCTU RecName: Full=Putative prophage phiRv2 integrase gi|1550700|emb|CAB02359.1| PROBABLE phiRv2 PROPHAGE INTEGRASE [Mycobacterium tuberculosis H37Rv] gi|124601827|gb|EAY60837.1| hypothetical protein TBCG_02599 [Mycobacterium tuberculosis C] gi|134150836|gb|EBA42881.1| hypothetical phiRv2 prophage integrase [Mycobacterium tuberculosis str. Haarlem] gi|148506653|gb|ABQ74462.1| integrase [Mycobacterium tuberculosis H37Ra] gi|148722377|gb|ABR07002.1| hypothetical phiRv2 prophage integrase [Mycobacterium tuberculosis F11] gi|253319762|gb|ACT24365.1| phiRv2 phage integrase [Mycobacterium tuberculosis KZN 1435] gi|289421272|gb|EFD18473.1| phiRv2 phage integrase [Mycobacterium tuberculosis CPHL_A] gi|289438186|gb|EFD20679.1| phiRv2 phage integrase [Mycobacterium tuberculosis KZN 605] gi|289544587|gb|EFD48235.1| phiRv2 phage integrase [Mycobacterium tuberculosis T17] gi|289686988|gb|EFD54476.1| integrase [Mycobacterium tuberculosis 02_1987] gi|289691897|gb|EFD59326.1| phiRv2 phage integrase [Mycobacterium tuberculosis T92] gi|289710336|gb|EFD74352.1| phiRv2 prophage integrase [Mycobacterium tuberculosis GM 1503] gi|289714351|gb|EFD78363.1| integrase [Mycobacterium tuberculosis T85] gi|298495925|gb|EFI31219.1| phiRv2 prophage integrase [Mycobacterium tuberculosis 94_M4241A] gi|308214684|gb|EFO74083.1| phiRv2 phage integrase [Mycobacterium tuberculosis SUMu001] gi|308326345|gb|EFP15196.1| phiRv2 phage integrase [Mycobacterium tuberculosis SUMu002] gi|308329888|gb|EFP18739.1| phiRv2 phage integrase [Mycobacterium tuberculosis SUMu003] gi|308333504|gb|EFP22355.1| phiRv2 phage integrase [Mycobacterium tuberculosis SUMu004] gi|308341179|gb|EFP30030.1| phiRv2 phage integrase [Mycobacterium tuberculosis SUMu006] gi|308346032|gb|EFP34883.1| phiRv2 phage integrase [Mycobacterium tuberculosis SUMu007] gi|308348986|gb|EFP37837.1| phiRv2 phage integrase [Mycobacterium tuberculosis SUMu008] gi|308353711|gb|EFP42562.1| phiRv2 phage integrase [Mycobacterium tuberculosis SUMu009] gi|308357551|gb|EFP46402.1| phiRv2 phage integrase [Mycobacterium tuberculosis SUMu010] gi|308361496|gb|EFP50347.1| phiRv2 phage integrase [Mycobacterium tuberculosis SUMu011] gi|308365102|gb|EFP53953.1| phiRv2 phage integrase [Mycobacterium tuberculosis SUMu012] gi|323718743|gb|EGB27903.1| phiRv2 phage integrase [Mycobacterium tuberculosis CDC1551A] gi|328458031|gb|AEB03454.1| phiRv2 phage integrase [Mycobacterium tuberculosis KZN 4207] Length = 375 Score = 93.9 bits (232), Expect = 3e-17, Method: Composition-based stats. Identities = 51/286 (17%), Positives = 98/286 (34%), Gaps = 31/286 (10%) Query: 85 GSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRK-HTPSSAIQFLTSMRV 142 + +R + D I+ D D R IT +R + TP+ + +R Sbjct: 88 RGIKDRTRAHYRKLLDNHILATFADTDLRDITPAAVRRWYATTAVGTPTMRAHSYSLLRA 147 Query: 143 LFKWAVRQEYVAINPCL-SVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLY 201 + + A+ + + NPC S R+ IRP T ++++ + Q + + Sbjct: 148 IMQTALADDLIDSNPCRISGASTARRVHKIRPATLDELETITKAMPDPYQAFV--LMAAW 205 Query: 202 SGLRCSDSCRAGVQHLQ---------------NNIFSIKTQKTGTII-TVELPDGFMKLL 245 +R + + + F + T K+ + + +P + + Sbjct: 206 LAMRYGELTELRRKDIDLHGEVARVRRAVVRVGEGFKVTTPKSDAGVRDISIPPHLIPAI 265 Query: 246 ------AMTPIGKETFF--INNDKQKMNATQFSIWFKAKATKAG-VNKSAHGVRKFSATI 296 + P + F +N+ + + + F AG + H +R A + Sbjct: 266 EDHLHKHVNPGRESLLFPSVNDPNRHLAPSALYRMFYKARKAAGRPDLRVHDLRHSGAVL 325 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGAD-RIRLGIKNSRRISS 341 +A GAT ELM G T A Y A R R +++ Sbjct: 326 AASTGATLAELMQRLGHSTAGAALRYQHAAKGRDREIAALLSKLAE 371 >gi|256839225|ref|ZP_05544735.1| integrase [Parabacteroides sp. D13] gi|256740144|gb|EEU53468.1| integrase [Parabacteroides sp. D13] Length = 310 Score = 93.9 bits (232), Expect = 3e-17, Method: Composition-based stats. Identities = 47/299 (15%), Positives = 99/299 (33%), Gaps = 33/299 (11%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD--FDYRKITTK---HIRSGVESRKH 128 I+ R+ + +S S++ + +R G Y +I + + + R+ Sbjct: 13 YIARLREQGRY-----SSAKSYQDALNSFLRFCGQEVIPYTRIDREMLLRYQDYLRDREC 67 Query: 129 TPSSAIQFLTSMRVLFKWAVRQE------YVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 + ++ ++ +R ++ A+ Y+ + V+ ++K + M Sbjct: 68 SWNTVSTYMRRIRRVYGLAMENGEAPFSRYLFKGIFMGVKSKQKKALPMESLRL-LMTAP 126 Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFM 242 R L+ G+ D ++N + QKTGT + VE+ Sbjct: 127 LDDSGLRKTQRALCLMFLFCGMAFVDFAHLKKSDIRNGVLRYNRQKTGTPMLVEIQPVAK 186 Query: 243 KLLAM----TPIGKETFFINNDKQKMNATQFS----------IWFKAKATKAGVNK--SA 286 +LLA T F K F K A GV + ++ Sbjct: 187 ELLAALMTDTLRDSPYLFTFLSGTKTGEEAFREYTSALADFNSSLKELANACGVTEMVTS 246 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDS 345 + +R AT + G + G +++ + Y K ++ N S+ ++ Sbjct: 247 YSIRHSFATTLKEQGVPIEMISELLGHQSIKTTQIYLKSFSLDKMSAVNKACFESIYNN 305 >gi|168789851|ref|ZP_02814858.1| integrase [Escherichia coli O157:H7 str. EC869] gi|261227840|ref|ZP_05942121.1| phage integrase [Escherichia coli O157:H7 str. FRIK2000] gi|261258426|ref|ZP_05950959.1| putative integrase [Escherichia coli O157:H7 str. FRIK966] gi|189370614|gb|EDU89030.1| integrase [Escherichia coli O157:H7 str. EC869] gi|323163435|gb|EFZ49261.1| integrase [Escherichia coli E128010] Length = 312 Score = 93.9 bits (232), Expect = 3e-17, Method: Composition-based stats. Identities = 49/301 (16%), Positives = 98/301 (32%), Gaps = 12/301 (3%) Query: 28 GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRK-SAHWGS 86 G+RIR + +S + L NS ++P ++ LI + K Sbjct: 6 RKGKRIRKKFKTKSDAVLYERWVLAQQHNNEWKGNSIDRRPLSV--LIDLWWKYHGQLMK 63 Query: 87 LAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKW 146 N+R+ + + + T+ +R + PS+ + + ++ +F Sbjct: 64 SGHNTRLKLLRLSEAMDDPCVHKLNTTMLTE-LRVSRIEQGIQPSTINREIGALSAMFTA 122 Query: 147 AVRQEY-VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLR 205 + + + NP ++ K + +K + Q +E RLA E LL +G R Sbjct: 123 LISSGHFLNDNPVQGLKGMKVNEREMGYLSKSECVQLLDALAENPDERLAVEILLSTGAR 182 Query: 206 CSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMN 265 + + + + + K TV + + + + G + F D + Sbjct: 183 WGEVAALEQRRVLHCRITFSKTKNSKNRTVPISESLFE--KIKKRGGKLVFPTLD-YPLV 239 Query: 266 ATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 K A ++ H +R A+ G L G + Y Sbjct: 240 RD----VIKTVAPDVPDGQAVHALRHTFASHFMMNGGNILTLQKILGHAKIQTTMIYAHL 295 Query: 326 A 326 A Sbjct: 296 A 296 >gi|329955587|ref|ZP_08296495.1| site-specific recombinase, phage integrase family [Bacteroides clarus YIT 12056] gi|328525990|gb|EGF53014.1| site-specific recombinase, phage integrase family [Bacteroides clarus YIT 12056] Length = 330 Score = 93.9 bits (232), Expect = 3e-17, Method: Composition-based stats. Identities = 39/265 (14%), Positives = 87/265 (32%), Gaps = 20/265 (7%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHT 129 L+ Y + + + ++S D + +TT IR+ + E RK + Sbjct: 55 LLQAYLSAKKIEGCSEKTIGYYQSTIDTLFVAV-CKPVCDVTTNDIRNYLSGYQEQRKVS 113 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 + F W ++++ +P + R + ++ T E+M+ + E Sbjct: 114 RVTIDNMRRIFSSFFAWLEDEDFIVKSPVRRIHRVRTESLVKEVLTDENMEVLRDSCQE- 172 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT----QKTGTIITVELPDG----F 241 + + L +G+R + + + F + K V Sbjct: 173 IRDIAMIDLLASTGMRVGELVNLNREDID---FHERQCVVFGKGNKEREVYFNARTKIHL 229 Query: 242 MKLLAMTPIGKETFF--INNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISA 298 L+ F ++N +++ + + + K + K H R+ AT++ Sbjct: 230 QNYLSSRTDDNPALFVSLSNPHSRLSISGVEVRLRTLGRKVNIAKVHPHKFRRTLATMAI 289 Query: 299 DAGATAHELMATYGWKTVDQAETYT 323 D G ++ G +D Y Sbjct: 290 DKGMPIEQVQRLLGHVKIDTTLHYA 314 >gi|322689216|ref|YP_004208950.1| phage integrase [Bifidobacterium longum subsp. infantis 157F] gi|320460552|dbj|BAJ71172.1| putative phage integrase [Bifidobacterium longum subsp. infantis 157F] Length = 391 Score = 93.9 bits (232), Expect = 3e-17, Method: Composition-based stats. Identities = 59/347 (17%), Positives = 111/347 (31%), Gaps = 41/347 (11%) Query: 11 VTKERTRHGKIIYY--FRKGHGRRIRLPY---PHESTFIPAYMSALTGSTPKREYINSPR 65 +T+ RT G+ Y +RK G + ++ A + +T + Sbjct: 4 ITRYRTAKGENRYRVRYRKPDGTQTDKRGFRRKIDAETWAAEHVTIAKATGSYIDPEGGK 63 Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125 ++ TL K W + + ++ S ++ K + IT +++ V S Sbjct: 64 QRIGTLHDQWIA-EKKPFWKATSGSNMDS--AWKCHCEAKWAERQIGSITHAEVQAWVGS 120 Query: 126 --RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP--WTKEDMQQ 181 K S + M+ + AVR + ++ NPC +E P+ R T + Sbjct: 121 IIDKSGAPSVSRPYQIMQGICSMAVRDKLISSNPCDGIELPRLPKRKDRRIYLTITRLLA 180 Query: 182 FKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQH--LQNNIFSIKTQ-------- 227 + G + R L + GLR ++ + I ++ Sbjct: 181 LANEASNCRKLGEERRALILLLGFCGLRWGEAAGLQRRDLDFDAGILHVRRNLVYVNAKW 240 Query: 228 -----KTGTIITVELPDGFMKLLAMTPIGKET---FFINNDKQKMNATQFSI---WFKAK 276 K V +P M L +E F + + + W+ Sbjct: 241 AEGTPKNHERRDVPMPRIVMDALKPICEQREHEERVFRDVRGGPIRKQSLARETGWWTHT 300 Query: 277 ATKAGVNKS----AHGVRKFSATISADAGATAHELMATYGWKTVDQA 319 T+ G + H +R +A+++ AGA L G K Sbjct: 301 LTRLGWKRDDWPVPHDLRHTAASLAVHAGANVKALQRMLGHKNASMT 347 >gi|313900781|ref|ZP_07834273.1| site-specific recombinase, phage integrase family [Clostridium sp. HGF2] gi|312954451|gb|EFR36127.1| site-specific recombinase, phage integrase family [Clostridium sp. HGF2] Length = 397 Score = 93.9 bits (232), Expect = 3e-17, Method: Composition-based stats. Identities = 60/377 (15%), Positives = 110/377 (29%), Gaps = 59/377 (15%) Query: 9 PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68 ++ K G Y + P P P+ E K Sbjct: 24 KYLYKYVDAFGNTKYVYAWRLTP--TDPTPKGKREKPSLRELEQQIRRDIEDGIDSTGKK 81 Query: 69 TTLKWLISEY-RKSAHWGSLAVNSRISFESYFDQI-IRKSGDFDYRKITTKHIRSGVESR 126 T L Y +++A ++ +++ E + K G I + Sbjct: 82 MT---LCQLYAKQNAQRANVKKSTQKQREQLMRLLKEDKLGARSIDTIKPSDAKEWALRM 138 Query: 127 KHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPC--LSVERPKRKTEGIRPWTKEDMQQ 181 K ++ S++ F A++ + V NP E + T+ T+E Q Sbjct: 139 KDKGFSYNTINNHKRSLKASFYIAIQDDCVRKNPFDFKLSEVLENDTKEKVALTEEQEQA 198 Query: 182 FKSFWSEGSQPRLAFE---FLLYSGLRCSDSCRAGVQHLQ----------------NNIF 222 SF + ++ LL +GLR S+ C + + + Sbjct: 199 LLSFIKTDNVYHKYYDDVLILLKTGLRISELCGLTMADIDFANEVVVIDHQLLKSKEQGY 258 Query: 223 SIKTQKTGTIIT-VELPDGFMKLLAMTPIG------------KETFFINNDKQKMNATQF 269 I+T KT + + V L ++ K+ FIN+ + A + Sbjct: 259 YIETPKTKSGVRNVPLSKETIQAFHRVIKKRSKIRSMEIDGHKDFLFINSKGKPKVAIDY 318 Query: 270 SIWF--------KAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVD---- 317 + F K + + + H +R T A +L G + Sbjct: 319 TTLFVRMVKKYNKHHKDRLLPHITPHTLRHTFCTRLASKNMNPKDLQYIMGHSNISITMN 378 Query: 318 ---QAETYTKGADRIRL 331 A T ++ RL Sbjct: 379 WYAHASIDTAKSEVQRL 395 >gi|298244935|ref|ZP_06968741.1| integrase family protein [Ktedonobacter racemifer DSM 44963] gi|297552416|gb|EFH86281.1| integrase family protein [Ktedonobacter racemifer DSM 44963] Length = 389 Score = 93.9 bits (232), Expect = 3e-17, Method: Composition-based stats. Identities = 56/367 (15%), Positives = 118/367 (32%), Gaps = 46/367 (12%) Query: 15 RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74 +H + R G+ R +++ A +R+ ++ T K Sbjct: 22 VVQHADGRWVARVPLGKGKRKEEYYKTKQEAE--RAKRRMLNERDAGKLVTEQEQTFKDY 79 Query: 75 ISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITT---KHIRSGVESRKHTP 130 + Y +AH ++ + I + Y + +II RK+T + + E K +P Sbjct: 80 L-AYWLNAHRTTVRKTTYIMYSKYLETRIIPVLVHVGLRKLTLEMFQSLYQKWEQEKLSP 138 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 ++ + AV+ + +A NP +V+ PK + I + E++++ E Sbjct: 139 NTIRLIHGIISEALNDAVKWKKLAYNPAQNVKLPKPRKTKIYVLSDEEIERLLQCAQE-M 197 Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTII----------------- 233 F L G+R + + ++ Q+T + + Sbjct: 198 HLHALFRMALLLGMRAGELLALRWSDINFKKRALTIQRTVSYVNDPAIGHYDFHVGPPKT 257 Query: 234 -----TVELP----DGFMKLLAMTP---------IGKETFFINNDKQKMNATQFSIWFKA 275 T+ LP D ++ ++ F + ++F Sbjct: 258 EAGERTIHLPLDIVDVLLEHREKQTQMRVSSPHWKDQDLVFCTRFGNYLTPASVRVFFDR 317 Query: 276 KATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKG-ADRIRLG 332 AG+ H +R ++ I M G ++D + TY D + Sbjct: 318 LLKAAGLEHMKFHALRHNASRILRQLKIDPVVRMEMLGHTSLDMTDGTYGHATRDMHKEA 377 Query: 333 IKNSRRI 339 + R+ Sbjct: 378 AEEINRL 384 >gi|254003129|ref|YP_003052595.1| integrase family protein [Methylovorus sp. SIP3-4] gi|253987212|gb|ACT52068.1| integrase family protein [Methylovorus sp. SIP3-4] Length = 380 Score = 93.9 bits (232), Expect = 3e-17, Method: Composition-based stats. Identities = 45/254 (17%), Positives = 82/254 (32%), Gaps = 26/254 (10%) Query: 92 RISFES---YFDQIIR-KSGDFDYRKITTKHIRSGVESR-------KHTPSSAIQF---L 137 + +E +QI R G R T+ I S + R P +A L Sbjct: 21 KKGYEQEKFRIEQICRSPLGSLVVRNATSVDIASFRDDRLSQVNQKTKKPIAASTVRLEL 80 Query: 138 TSMRVLFKWA-VRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP--RL 194 + + F + NP +V +PK R T + +Q + S Sbjct: 81 SLLSSFFDICRIEWGLCESNPVTNVRKPKAPPGRDRRLTPREDRQILRYAHSHSNQEFYS 140 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNN--IFSIKTQKTGTIITVELPDGFMKLLAMTPIGK 252 L + +R S+ + +HL I + K G+ V L L + Sbjct: 141 IVILALETAMRQSEIIKLCWEHLDLKSRIAHLPDTKNGSKRDVPLSAKARDALIRLGVKS 200 Query: 253 ETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAG-ATAHELMAT 310 + ++ ++ K G+ + H +R + + + G E+ A Sbjct: 201 KGNVFT-----YTSSGIKSTWRFMLGKLGIEDLHFHDMRHEAISRFFELGSLDMMEIAAI 255 Query: 311 YGWKTVDQAETYTK 324 G K++ + YT Sbjct: 256 SGHKSLSMLKRYTH 269 >gi|110640480|ref|YP_668208.1| phage integrase [Escherichia coli 536] gi|14594860|emb|CAC43408.1| integrase of Shigella flexneri bacteriophage X [Escherichia coli] gi|110342072|gb|ABG68309.1| phage integrase [Escherichia coli 536] Length = 386 Score = 93.9 bits (232), Expect = 3e-17, Method: Composition-based stats. Identities = 46/275 (16%), Positives = 94/275 (34%), Gaps = 26/275 (9%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131 K +IS + L+ + D + + ++ + +R G ++ P Sbjct: 80 KSIISFWMLHFRETILSDITTEKIMEAVDGMENRRHRLNWEMSRDRCLRLGKPVPEYKPK 139 Query: 132 SAI-----QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 A + L +R + AV ++ P + P+ K IR T+E+ ++ + Sbjct: 140 LASKGTKTRHLAILRAILNMAVEWGWLDRTP--KISTPRVKNGRIRWLTEEESKRLFAEI 197 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQKTGTIITVELPDGFM 242 + P + F +GLR S+ + + K G I V L + Sbjct: 198 APHFFPVVMFAIT--TGLRRSNVTDLEWSQVDLDKKMAWMHPDETKAGNAIGVPLNETAC 255 Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFS------------IWFKAKATKAGV-NKSAHGV 289 ++L + + + K + +K +AG+ N H + Sbjct: 256 QILRKQQGLHKRWVFVHTKPAYRSDGTKTAAVRKMRTDSNKAWKGALKRAGISNFRFHDL 315 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 R A+ +G + L GW+T++ + Y Sbjct: 316 RHTWASWLVQSGVSLLALKEMGGWETLEMVQRYAH 350 >gi|239621464|ref|ZP_04664495.1| conserved hypothetical protein [Bifidobacterium longum subsp. infantis CCUG 52486] gi|239515925|gb|EEQ55792.1| conserved hypothetical protein [Bifidobacterium longum subsp. infantis CCUG 52486] Length = 391 Score = 93.9 bits (232), Expect = 3e-17, Method: Composition-based stats. Identities = 59/347 (17%), Positives = 112/347 (32%), Gaps = 41/347 (11%) Query: 11 VTKERTRHGKIIYY--FRKGHGRRIRLPY---PHESTFIPAYMSALTGSTPKREYINSPR 65 +T+ RT G+ Y +RK G + ++ A + +T + Sbjct: 4 ITRYRTAKGENRYRVRYRKPDGTQTDKRGFRRKIDAETWAAEHVTIAKATGSYIDPEGGK 63 Query: 66 KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125 ++ TL + K W + + ++ S ++ K + IT +++ V S Sbjct: 64 QRIGTLHDQWTA-EKKPFWKATSGSNMDS--AWKCHCEAKWAERQIGSITHAEVQAWVGS 120 Query: 126 --RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRP--WTKEDMQQ 181 K S + M+ + AVR + ++ NPC +E P+ R T + Sbjct: 121 IIDKSGAPSVSRPYQIMQGICSMAVRDKLISSNPCDGIELPRLPKRKDRRIYLTITRLLA 180 Query: 182 FKSFW----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQH--LQNNIFSIKTQ-------- 227 + G + R L + GLR ++ + I ++ Sbjct: 181 LANEASNCRKLGEERRALILLLGFCGLRWGEAAGLQRRDLDFDAGILHVRRNLVYVNAKW 240 Query: 228 -----KTGTIITVELPDGFMKLLAMTPIGKET---FFINNDKQKMNATQFSI---WFKAK 276 K V +P M L +E F + + + W+ Sbjct: 241 AEGTPKNHERRDVPMPRIVMDALKPICEQREHEERVFRDVRGGPIRKQSLARETGWWTHT 300 Query: 277 ATKAGVNKS----AHGVRKFSATISADAGATAHELMATYGWKTVDQA 319 T+ G + H +R +A+++ AGA L G K Sbjct: 301 LTRLGWKRDDWPVPHDLRHTAASLAVHAGANVKALQRMLGHKNASMT 347 >gi|323139026|ref|ZP_08074085.1| integrase family protein [Methylocystis sp. ATCC 49242] gi|322395686|gb|EFX98228.1| integrase family protein [Methylocystis sp. ATCC 49242] Length = 426 Score = 93.9 bits (232), Expect = 3e-17, Method: Composition-based stats. Identities = 56/362 (15%), Positives = 114/362 (31%), Gaps = 43/362 (11%) Query: 21 IIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRK 80 I+ R+ ++ P E+ + A + T+ L +Y + Sbjct: 49 PIWRTRRLAFAKVGTITPEEARARARRLLADAAEGGDPSAERHEARSALTVAELCDQYLE 108 Query: 81 SAHWGSLAVNSRISFE---------SYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT-- 129 +A G + R I G KIT ++ ++ Sbjct: 109 AARAGLVLTRFRKPKRASTIAIDEGRVARHIAPLIGKKVASKITRADLQRMADAIAAGKT 168 Query: 130 -----------------PSSAIQFLTSMRVLFKWAVRQEYVA-INPCLSVERPKRKTEGI 171 +A + + + ++ WA ++ V NP VE + + Sbjct: 169 AATIRTKMRGVARVEGGAGTAARVVELIGGIWSWAEKRGLVEGANPARGVETHRGDAK-D 227 Query: 172 RPWTKEDMQQF----KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIK 225 R T E++ + + + P A + +G R + C + N+ ++ Sbjct: 228 RILTAEELARLGVVLREQEAVRPAPVAALRIIALTGARREEICSLRWNEIDAANSCLRLQ 287 Query: 226 TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS 285 KTG + + + LLA P + F N AG+ + Sbjct: 288 ETKTGRSMR-PIGRAVLDLLATLPRAGDFVFPNRTGD--GHADMKKALADLFDAAGLKDT 344 Query: 286 -AHGVRKFSATISADAGATAHELMATYGWKTVD-QAETYTKGADRIRLGIKNSRRISSVV 343 +H +R+ A+++AD G + G A Y + D + + R+S+ + Sbjct: 345 RSHDLRRTFASVAADEGYGDATIGELLGHARRGVTARHYIRRPDAALVA--AADRVSACI 402 Query: 344 DS 345 + Sbjct: 403 SA 404 >gi|260590882|ref|ZP_05856340.1| putative integrase [Prevotella veroralis F0319] gi|260537173|gb|EEX19790.1| putative integrase [Prevotella veroralis F0319] Length = 421 Score = 93.9 bits (232), Expect = 3e-17, Method: Composition-based stats. Identities = 48/287 (16%), Positives = 103/287 (35%), Gaps = 33/287 (11%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTK---HIRS-GVESRK 127 K + +R S +L + +R +GD ++ H R + Sbjct: 130 KATVRAFRDSRKNFALFLKTRG------------NGDCLPKEADKDLIEHYRLFMLRDLG 177 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 + S+ L + + + A++Q Y+ +P ++ + T T +D+ + S+ Sbjct: 178 NKESTVSNRLRHLHQVIRKALQQRYIREDPFELID-IETPTYERNALTSDDLHKLLSYRP 236 Query: 188 EGS---QPRLAFEFLLYSGLRCSDSCRAGVQHL---QNNI--FSIKTQKTGTIITVELPD 239 S RL F ++GL SD + + + + S+ KT V L Sbjct: 237 HRSVDNHCRLIFLLGCFTGLAFSDLKKLRMDDVYTLDDGRRYISLCRTKTQNRSIVPLLP 296 Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN----KSAHGVRKFSAT 295 ++L + G++ + ++ + F+ + KAG+ ++H R AT Sbjct: 297 IAEEILTIVSDGQKEGLL--FREFPTNSHFNRKIRDIIIKAGLPSHTEATSHTARHTFAT 354 Query: 296 IS-ADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341 + G + G + + E Y K + ++ + + S Sbjct: 355 TICLENGLPIETVSKMLGHRFISTTELYAK-VSKSKIAREMQPLMGS 400 >gi|153954207|ref|YP_001394972.1| site-specific tyrosine recombinase XerC [Clostridium kluyveri DSM 555] gi|146347088|gb|EDK33624.1| Predicted recombinase [Clostridium kluyveri DSM 555] Length = 328 Score = 93.9 bits (232), Expect = 3e-17, Method: Composition-based stats. Identities = 47/236 (19%), Positives = 93/236 (39%), Gaps = 20/236 (8%) Query: 119 IRSGVESRKHTPSSAI-QFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTEGIRPWTK 176 S +E+ +H S A + + S++ FK+ + + ++ NP L +E P+ + Sbjct: 86 FISFIENYRHNKSYARARKVASLKSFFKYLCSKAKLISENPALELESPQISKRNPIYLSL 145 Query: 177 EDMQQFKSFWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT 234 ++ + + R F L G+R S+ C + +++ + ++ K T Sbjct: 146 KESKLLLESIDGKFKERDYCIITFFLNCGMRLSELCSINISNIKEDTLTVI-GKGNKERT 204 Query: 235 VELPDGFMKLLAM----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN- 283 + L ++ L K+ FI+ + ++N I K KA ++ Sbjct: 205 IYLNKSCLEALKNYLTSRDEYLNKIKDKDALFISKNYARINKRSVEIMLKKYLKKANLDS 264 Query: 284 --KSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGAD-RIRLGIKN 335 + H +R +AT+ G L G + V + YT D R+R IK+ Sbjct: 265 EKYTPHKLRHTAATLMYKYGHVDIRSLQKILGHENVSTTQIYTHVDDERLREAIKS 320 >gi|154244121|ref|YP_001415079.1| integrase family protein [Xanthobacter autotrophicus Py2] gi|154158206|gb|ABS65422.1| integrase family protein [Xanthobacter autotrophicus Py2] Length = 342 Score = 93.9 bits (232), Expect = 3e-17, Method: Composition-based stats. Identities = 41/273 (15%), Positives = 88/273 (32%), Gaps = 30/273 (10%) Query: 82 AHWGSLAVNSRISFESYF--------DQIIRKSGDFDYRKITTKHIRSGVESRKH---TP 130 AH L+ + ++ D + G D +TT +R+ + +R+ P Sbjct: 36 AHERRLSPKTLEAYARDLAVVLLRLTDHLGACPGLGDLAGLTTADVRAVLAARRADGVAP 95 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 + ++ L + R + R+ + +V PK +P + + + Sbjct: 96 RTLVRLLAAARSFGRHLEREGLGKVGALTAVRAPKVPRSLPKPVSIAAARALSDPTTRAG 155 Query: 191 QPR---------LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV-----E 236 + R L +GLR S++ + + + SI G + Sbjct: 156 EDREDWVLARDAAVIALLYGAGLRISEALSLTPRDVPADAESITVTGKGRKTRMVPLIAP 215 Query: 237 LPDGFMKLLAMTPIG---KETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRK 291 + + A+ P + F ++ + + G+ +SA H +R Sbjct: 216 VRRSIAEYRAICPHALGPEGPLFRGTRGGPLSPRIVQLAVERMRGALGLPQSATPHALRH 275 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTK 324 AT G + G ++ + YT+ Sbjct: 276 AFATHLLSRGGEIRAIQELLGHASLSTTQIYTE 308 >gi|186681294|ref|YP_001864490.1| phage integrase family protein [Nostoc punctiforme PCC 73102] gi|186463746|gb|ACC79547.1| phage integrase family protein [Nostoc punctiforme PCC 73102] Length = 370 Score = 93.9 bits (232), Expect = 3e-17, Method: Composition-based stats. Identities = 53/291 (18%), Positives = 107/291 (36%), Gaps = 37/291 (12%) Query: 68 PTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRK 127 P TL L + S SL+V +R + ++ I ++ + + T + Sbjct: 84 PQTLLELWDYWVDS---LSLSVATR---QHHYKAIRQQILKANPDLMDT----LWLTKSN 133 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 S+ Q L ++ ++WA+ + NP ++ + T+ I+P+T +++ + Sbjct: 134 LGASTFNQRLGYLKRCYRWAISKNLGNSNPYDELKTRRVCTKSIKPFTSREIKVIIQGFE 193 Query: 188 EGSQPRLAF-EFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ------------------- 227 E + F +FLL +G+R S++ H+ + + Q Sbjct: 194 ESAMHYAPFIKFLLATGVRTSEAIGLRWCHVDFDQGFVTIQESLSRDWAGNGYQRVRKET 253 Query: 228 KTGTIITVELPDGFMKLLAMTPIGK----ETFFINNDKQKMNATQF--SIWFKAKATKAG 281 KTG+ +E+ + LL K F + ++ F W K Sbjct: 254 KTGSNRQLEMTEELRGLLWSLKPSKTDPDSLVFTTVKGKPIDDGNFRERYWVKVLTKVGV 313 Query: 282 VNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRL 331 + + R +A+ + D G + + G K +TY +R +L Sbjct: 314 DYRRPYTTRHTTASHAIDQGTSVTGVAYLLGHKDTRMVMQTYAHLVNRPKL 364 >gi|319937020|ref|ZP_08011430.1| transposon integrase [Coprobacillus sp. 29_1] gi|319807956|gb|EFW04535.1| transposon integrase [Coprobacillus sp. 29_1] Length = 410 Score = 93.9 bits (232), Expect = 3e-17, Method: Composition-based stats. Identities = 64/391 (16%), Positives = 115/391 (29%), Gaps = 82/391 (20%) Query: 13 KERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPA-------YMSALTGSTPKREYINSPR 65 R K RKG +R ++ + Y L K + I+ + Sbjct: 2 ANTKRKDKSRKVLRKGESQRPD--GTYQFRWTDENRKRHCIYARNLDDLRYKEDEIDKDK 59 Query: 66 KKPTTLKWLISEYRKSAH-WGSLAV----NSRISFESYFDQIIR-KSGDFDYRKITTKHI 119 K + + W L N+ +++ ++ +R + G I I Sbjct: 60 KDGIKAEARYTSLNDMYELWRDLKRGIKNNTFENYKYMYETFVRNQIGSQFIMSIKKTDI 119 Query: 120 RSG----VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER-PKR----KTEG 170 + V+ R P++ T + +F+ AV +Y+ NP +V R K+ KTE Sbjct: 120 KRYYNSLVDDRHLKPATIDSIHTVLHQVFEMAVDDDYIRSNPTDNVLRELKKSHCFKTEK 179 Query: 171 IRPWTKEDMQQFKSFW---SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNI------ 221 R TK + + F + E F ++ +GLR + + Sbjct: 180 RRALTKPEQELFLEYLKNTPEAQYWYPIFAVMVGTGLRVGELTGLRWCDIDLEEGIIDVN 239 Query: 222 ------------------FSIKTQKTGTIIT-VELPD-------------GFMKLLAMTP 249 F++ T KT + V + + + L Sbjct: 240 HTLVYYDHRTEGSKKGCYFNVNTTKTPAGMRQVPMLEFVKEAFLMEKERQELLGLHCEAT 299 Query: 250 IGKET--FFINNDKQKMNATQFSIWFKAKATKAG--------------VNKSAHGVRKFS 293 + T F+N Q + + + + S H +R Sbjct: 300 VDGYTDFVFVNRFGQPQHQATLNKAIRRIIRNCNDKQFLESENPEVLLPHFSCHSLRHTF 359 Query: 294 ATISADAGATAHELMATYGWKTVDQA-ETYT 323 T +AG + G K V YT Sbjct: 360 TTRMCEAGVNVKVIQDALGHKDVSTTLNIYT 390 >gi|186681250|ref|YP_001864446.1| phage integrase family protein [Nostoc punctiforme PCC 73102] gi|186463702|gb|ACC79503.1| phage integrase family protein [Nostoc punctiforme PCC 73102] Length = 400 Score = 93.9 bits (232), Expect = 3e-17, Method: Composition-based stats. Identities = 54/320 (16%), Positives = 100/320 (31%), Gaps = 44/320 (13%) Query: 44 IPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISF-ESYFDQI 102 + Y L + SPR T L L +Y A R + Y + I Sbjct: 74 LERYKEKLESYKKPLLTLVSPRTPQTDLMELWEQYCAYMKPQLAATTYRRDYARKYTNHI 133 Query: 103 IRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINP----C 158 + +T + +P++A + LT + KWA+ NP Sbjct: 134 KG----LPTKDLTQAIAIRDHLLTQLSPNAAKRVLTYLAACCKWAMGSGLAKDNPFAGMS 189 Query: 159 LSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF-EFLLYSGLRCSDSCRAGVQHL 217 ++ PK ++ I P++K++M + F +FL ++G R ++ +H+ Sbjct: 190 EDIKLPKHDSDAIDPFSKQEMNNIIQAFETTRAHYAPFVKFLFWTGCRTGEAIALQWKHI 249 Query: 218 Q------------NNIFSIKTQ-KTGTIITVELPDGFMKLLAMTPIGK----ETFFINND 260 ++ +I+ KTG +LL F + Sbjct: 250 NPECTQINFCESYDSQLNIRKGTKTGKARKFPCNTQVRELLLSIRPQDINLESQVFTSPT 309 Query: 261 KQKMNATQFSI--WFKAKATKAGVNKSAHGV---------------RKFSATISADAGAT 303 ++ T+FS W + + N G+ R T+ + G T Sbjct: 310 GGIISNTRFSTQVWKGGRTSNKNYNGVMQGLLDAGEIERYRCPYNTRHTFITLMLEQGLT 369 Query: 304 AHELMATYGWKTVDQAETYT 323 + G + Y Sbjct: 370 VSTVAKLVGNSPEIILKHYA 389 >gi|313634565|gb|EFS01051.1| toxin-antitoxin system, toxin component, PIN family [Listeria seeligeri FSL N1-067] Length = 381 Score = 93.9 bits (232), Expect = 3e-17, Method: Composition-based stats. Identities = 47/296 (15%), Positives = 96/296 (32%), Gaps = 51/296 (17%) Query: 82 AHWGSLAVNSRISFESYFDQ--------IIRKSGDFDYRKITTKHIRSGVESR-KHTPSS 132 + W L ++ ES ++ I+ D KI + + + K P+S Sbjct: 77 STWLELY--TQTVKESTLERTKIFFNHHILPVFSDKFIDKIDIHFCQQVINAWSKSNPTS 134 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSV-----ERPKRKTEGIRPWTKEDMQQFKSFWS 187 + +FK+A+ + +P V E +++ + I + K +++ F Sbjct: 135 YKRLKNLTSRVFKYAISLHLIESDPFAFVVVPRGEMIEKEEKDITFYDKYELRSFLDTVK 194 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----------------IFSIKTQKTGT 231 + + F L ++GLR S++ Q + N + T KT Sbjct: 195 DDTFKYTFFYLLAFTGLRKSEALALTWQDVDLNNKRLYINKTLSRGEHARILVNTTKTKA 254 Query: 232 -IITVELP----DGFMKLL-------AMTPIGKETFFINNDK----QKMNATQFSIWFKA 275 + + D K + + K +N + FK Sbjct: 255 GKRDISIDASTVDVLKKWKSYQRGNHHILRLDKVQIIFDNKGNYYNPSSTYSWLDNIFKH 314 Query: 276 KATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAE-TYTKGADRIR 330 + ++HG R A++ +AGA+ ++ G + YT + Sbjct: 315 HTELKKI--TSHGFRHTHASLLFEAGASLKDVQERLGHADIQTTSNIYTHVTQEKK 368 >gi|218262162|ref|ZP_03476721.1| hypothetical protein PRABACTJOHN_02394 [Parabacteroides johnsonii DSM 18315] gi|218223568|gb|EEC96218.1| hypothetical protein PRABACTJOHN_02394 [Parabacteroides johnsonii DSM 18315] Length = 406 Score = 93.9 bits (232), Expect = 3e-17, Method: Composition-based stats. Identities = 54/323 (16%), Positives = 113/323 (34%), Gaps = 40/323 (12%) Query: 43 FIPAYMS-ALTGST-PKREYINSPRKKPTTLKWLISEYRKSAHW------GSLAVNSRIS 94 F Y L G R +N + K T K L + +++ A + Sbjct: 77 FYQIYQDLELEGKIISARAIVNRYQGKDETFKTLYNVFKEHNDNCRKLIGTDYADITVRR 136 Query: 95 FESYFDQIIR------KSGDFDYRKITTKHIRSGVESRKH----TPSSAIQFLTSMRVLF 144 +++ ++ K D R++ + +R K ++ I+++ + + Sbjct: 137 YDNCLKYLMELVRRDYKVDDMLLREVNGELVRKFDLYLKTEKHCAQNTVIRYMKCFKKVI 196 Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF---KSFWSEGSQPRLAFEFLLY 201 A+ E++ NP ++ + + + ++ ++ + + R F F +Y Sbjct: 197 NLAIANEWLTKNPFAGIKFHEVEVNK-QFLSQAEINRIWQKEFRIERLELVRDVFIFCVY 255 Query: 202 SGLRCSDSCRAGVQHLQNN-----IFSIKTQKTGTIITVEL---PDGFMKLLAMTP--IG 251 +GL D +H+ + +KT + + L P ++ P + Sbjct: 256 TGLAFIDVYNLRPEHISEDSNGNLWIVKPREKTNNLCNIPLLSIPKQILEKYKDNPYCMD 315 Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAG-ATAHELM 308 K T QKMN+ + K A G+ K + H R A++ A A + + Sbjct: 316 KGTLLPVPCNQKMNS-----YLKEIADLCGIKKNLTTHTARHSFASVIALANNVSLPNVA 370 Query: 309 ATYGWKTVDQAETYTKGADRIRL 331 G + + Y K D+ L Sbjct: 371 KMLGHSSTRMTQHYAKVLDQTIL 393 >gi|171464293|ref|YP_001798406.1| integrase family protein [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171193831|gb|ACB44792.1| integrase family protein [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 333 Score = 93.9 bits (232), Expect = 3e-17, Method: Composition-based stats. Identities = 47/309 (15%), Positives = 92/309 (29%), Gaps = 50/309 (16%) Query: 65 RKKPTTLKWLISEYRKSAH-WGSLAVNSRISFESYFD-----QIIRKSGDFDYRKITTKH 118 + K T L L+ EY H L+ ++ ++ + + Sbjct: 2 KLKATELHPLMQEYLHELHVLRQLSPHTLKAYGMDLSDLQNFALEDTVELLKVSNGHVRR 61 Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEY------------VAINPCLSVERPKR 166 + S+ +P S + L++ R + W ++ + NP V+ PKR Sbjct: 62 WAGRLHSKGKSPRSIARTLSAWRGWYDWLSEKDARRDVHAGKVTSALVANPVDDVKAPKR 121 Query: 167 KTEGIRPWTKEDM---------QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAG---- 213 + + E + + E + L SGLR S+ Sbjct: 122 PKSLPKALSVEQALALVNQAVKEAEEKKDLESIRDAAIIGLLYSSGLRLSELLGIDVIQS 181 Query: 214 --VQHLQNNIFSIKT------QKTGTIITVELPDGFMKLLAMT---------PIGKETFF 256 QH K G +V + MK LA F Sbjct: 182 KDRQHESAGWLDWDAAEVTVLGKGGKRRSVPVGVPAMKSLAAWRELRDDGSYAEESIALF 241 Query: 257 INNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWK 314 ++ ++++ + A +AG+ + H +R A+ + + G Sbjct: 242 LSATGKRLSPRTVQARLRTLAMRAGLPTHVHPHMMRHSFASHVLQSSQDLRAVQEMLGHA 301 Query: 315 TVDQAETYT 323 ++ + YT Sbjct: 302 SIASTQIYT 310 >gi|149916562|ref|ZP_01905077.1| site-specific recombinase, phage integrase family protein [Roseobacter sp. AzwK-3b] gi|149809536|gb|EDM69395.1| site-specific recombinase, phage integrase family protein [Roseobacter sp. AzwK-3b] Length = 363 Score = 93.9 bits (232), Expect = 3e-17, Method: Composition-based stats. Identities = 48/283 (16%), Positives = 94/283 (33%), Gaps = 33/283 (11%) Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIR----KSGDFDYRKITTKHIRSGVESRKH-- 128 + ++ + H+ R + + + G I +R + + Sbjct: 71 LDQFYRD-HFLPWYQTYRRNSTNIVQLYRSTYHIRYGHRHLHTICQDDLRKLTKEMQDLG 129 Query: 129 -TPSSAIQFLTSMRVLFKWAVRQEY------VAINPCLSVERPKRKTEGIRPWTKEDMQQ 181 P S + + +R + + A Y + P L + P+ + R ++E+ + Sbjct: 130 YAPGSVNRTVVILRGMLRRADDWGYCKIHSSLQKPPNLLPDHPRHE----RFLSREEAHR 185 Query: 182 FKSFWSE--GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVEL 237 ++ + LA FLLY+G R S+ A H+ + I K G TV L Sbjct: 186 LQAVLQRRGATPVNLAILFLLYTGARRSEVLNADWAHVDFARQEWRIPISKNGRPRTVIL 245 Query: 238 PDGFMKLLAMT-----------PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA 286 D + +L T F N + + W + +A + Sbjct: 246 SDRAVDILEQARAYQQRHFGKQARSVSTVFANPQTLQPYHNIWETWKRVRAEADLTDVRL 305 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 H +R A+ +AG + +E+ G + + Y A Sbjct: 306 HDLRHSYASTLINAGVSIYEVQKLLGHTNITTTQRYAHLASER 348 >gi|134093808|ref|YP_001098883.1| putative phage integrase [Herminiimonas arsenicoxydans] gi|133737711|emb|CAL60756.1| putative phage integrase [Herminiimonas arsenicoxydans] Length = 418 Score = 93.9 bits (232), Expect = 3e-17, Method: Composition-based stats. Identities = 56/332 (16%), Positives = 112/332 (33%), Gaps = 29/332 (8%) Query: 15 RTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWL 74 R RHG G + L ++ + + G+ P E + + T++ L Sbjct: 47 RFRHGNRRQEVTLGRYPDLSLAAARQAAARKR-IGIIDGTNPADEVRKAKANRDWTMREL 105 Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134 I++YRK + LA N+++++ +I + + + I + +E K S Sbjct: 106 IADYRK-LVFSDLAKNTQLTYGRNLKRIENGMAAMSVQTVGPEDIIAQLERVKAGWSELF 164 Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSV-------ERPKRKTEGIRPWTKEDMQQFKSFWS 187 +R LFK A ++ + NPC + +RP + + +++++ + Sbjct: 165 TLWMVLRGLFKHAAGKKIIFANPCAGIQLEAVIGKRPAIRRRLM--LSEDELTTVMN-AD 221 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDGFMKL- 244 S LA LL +G+R S+ A +++ + I KTG I + LP + Sbjct: 222 MNSANLLAIHILLGTGVRSSELFTALKENVFLDEGRWHIPASKTGPAIDIPLPPVVVGWF 281 Query: 245 --LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN------------KSAHGVR 290 L ++M+ + ++ + H +R Sbjct: 282 HELLEIAGNSIYVLPARVYRRMDRYGGDAHISKDTIREAIDFWVEKQQPDIRRFTPHDLR 341 Query: 291 KFSATISADAGATAHELMATYGWKTVDQAETY 322 + G K Y Sbjct: 342 STMKSHMRKLGVPRDISEMCLNHKVSGVEGIY 373 >gi|92116157|ref|YP_575886.1| site-specific tyrosine recombinase XerC [Nitrobacter hamburgensis X14] gi|91799051|gb|ABE61426.1| tyrosine recombinase XerC subunit [Nitrobacter hamburgensis X14] Length = 300 Score = 93.9 bits (232), Expect = 3e-17, Method: Composition-based stats. Identities = 38/280 (13%), Positives = 84/280 (30%), Gaps = 35/280 (12%) Query: 85 GSLAVNSRISFESY----FDQIIRKSGD----FDYRKITTKHIRSGVESRKH---TPSSA 133 L+ + ++ + + G+ + + +R+ + +R+ S Sbjct: 12 RRLSPKTCEAYARDARQCLMFLSQHWGELVTLKRFAALEASDVRAFMAARRADDIGGRSL 71 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193 ++ L +R ++ R+ + ++ PK +P ++F + R Sbjct: 72 MRALAGLRSFARFLEREGLGKVGALSAIRAPKVGKSLPKPIQMSAAKRFADASERAGEDR 131 Query: 194 ---------LAFEFLLYSGLRCSDSCRAGVQHL---QNNIFSIKTQKTGTIITVELPDGF 241 L SGLR S++ + + + T K V + Sbjct: 132 EPWIWARDAAVMALLYGSGLRISEALGLKRRDVPQPGAGDVLVVTGKGNKTRMVPVLQNV 191 Query: 242 MKLLA--------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRK 291 + L+ P F+ ++ + G+ + H +R Sbjct: 192 LALVHEYVAVCPHSLPPEGP-IFVGARGGPLSPRIIQLTMARMRGALGLPDSATPHALRH 250 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 AT G + G ++ + YT G D RL Sbjct: 251 SFATHLLSRGGDLRAIQELLGHASLSTTQIYT-GIDSERL 289 >gi|219854815|ref|YP_002471937.1| hypothetical protein CKR_1472 [Clostridium kluyveri NBRC 12016] gi|219568539|dbj|BAH06523.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 355 Score = 93.9 bits (232), Expect = 3e-17, Method: Composition-based stats. Identities = 47/236 (19%), Positives = 93/236 (39%), Gaps = 20/236 (8%) Query: 119 IRSGVESRKHTPSSAI-QFLTSMRVLFKW-AVRQEYVAINPCLSVERPKRKTEGIRPWTK 176 S +E+ +H S A + + S++ FK+ + + ++ NP L +E P+ + Sbjct: 113 FISFIENYRHNKSYARARKVASLKSFFKYLCSKAKLISENPALELESPQISKRNPIYLSL 172 Query: 177 EDMQQFKSFWSEGSQPR--LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIIT 234 ++ + + R F L G+R S+ C + +++ + ++ K T Sbjct: 173 KESKLLLESIDGKFKERDYCIITFFLNCGMRLSELCSINISNIKEDTLTVI-GKGNKERT 231 Query: 235 VELPDGFMKLLAM----------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN- 283 + L ++ L K+ FI+ + ++N I K KA ++ Sbjct: 232 IYLNKSCLEALKNYLTSRDEYLNKIKDKDALFISKNYARINKRSVEIMLKKYLKKANLDS 291 Query: 284 --KSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGAD-RIRLGIKN 335 + H +R +AT+ G L G + V + YT D R+R IK+ Sbjct: 292 EKYTPHKLRHTAATLMYKYGHVDIRSLQKILGHENVSTTQIYTHVDDERLREAIKS 347 >gi|94984539|ref|YP_603903.1| phage integrase [Deinococcus geothermalis DSM 11300] gi|94554820|gb|ABF44734.1| phage integrase [Deinococcus geothermalis DSM 11300] Length = 291 Score = 93.9 bits (232), Expect = 3e-17, Method: Composition-based stats. Identities = 34/268 (12%), Positives = 84/268 (31%), Gaps = 15/268 (5%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE---SRK 127 + I E+++ + + +++ + +T + + R Sbjct: 3 VADAIEEFQREHKARGSTPRTVKWYGETLRRLLTDHLSENVEALTPFTLSRALNIAGERG 62 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 P++ + ++R W E + +P + +RP + + + T E+++ Sbjct: 63 IRPATLANYDRALRGFTAWLHGVELLPRDPMKAKKRPVVRWQMKQVATPEEIRTLFELAR 122 Query: 188 E----GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMK 243 + L GLR + + + + ++K V + + Sbjct: 123 RDKRYADRNCAILALLAGCGLRAGEVASLKLTDVDWHGSAVKVSGKTGERIVPMDRTTQR 182 Query: 244 LLAMTPI-----GKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATI 296 LL F+ + + + A + + +AG + + H +R +AT Sbjct: 183 LLRRYVTHGRRGNHPNVFLFS-GRPIKAMTLTHLLSRMSDRAGFTRRVTPHLLRHTAATT 241 Query: 297 SADAGATAHELMATYGWKTVDQAETYTK 324 G L G T++ Y Sbjct: 242 YLRNGGDVASLRRILGHATINTTALYLH 269 >gi|323187008|gb|EFZ72325.1| integrase [Escherichia coli RN587/1] Length = 312 Score = 93.9 bits (232), Expect = 3e-17, Method: Composition-based stats. Identities = 49/301 (16%), Positives = 98/301 (32%), Gaps = 12/301 (3%) Query: 28 GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRK-SAHWGS 86 G+RIR + +S + L NS ++P ++ LI + K Sbjct: 6 RKGKRIRKKFKTKSDAVLYERWVLAQQHNNEWKGNSIDRRPLSV--LIDLWWKYHGQLMK 63 Query: 87 LAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKW 146 N+R+ + + + T+ +R + PS+ + + ++ +F Sbjct: 64 SGHNTRLKLLRLSEAMDDPCVHKLNTTMLTE-LRVSRIEQGIQPSTINREIGALSAMFTA 122 Query: 147 AVRQEY-VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLR 205 + + + NP ++ K + +K + Q +E RLA E LL +G R Sbjct: 123 LISSGHFLNDNPVQGLKGMKVNEREMGYLSKSECVQLLDALAENPDERLAVEILLSTGAR 182 Query: 206 CSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMN 265 + + + + + K TV + + + + G + F D + Sbjct: 183 WGEVAALEQRRVLHCRITFSKTKNSKNRTVPISENLFE--KIKKRGGKLVFPTLD-YPLV 239 Query: 266 ATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 K A ++ H +R A+ G L G + Y Sbjct: 240 RD----VIKTVAPDVPDGQAVHALRHTFASHFMMNGGNILTLQKILGHAKIQTTMIYAHL 295 Query: 326 A 326 A Sbjct: 296 A 296 >gi|315029442|gb|EFT41374.1| site-specific recombinase, phage integrase family [Enterococcus faecalis TX4000] Length = 392 Score = 93.9 bits (232), Expect = 3e-17, Method: Composition-based stats. Identities = 62/392 (15%), Positives = 123/392 (31%), Gaps = 72/392 (18%) Query: 1 MTPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY 60 M R +T GKI +YF+ R E+ AY+ K++ Sbjct: 1 MENMSRFKKHITAT----GKITWYFQAFRTTRRGFNSKREAQL--AYLEMEKQHRNKQKR 54 Query: 61 INS-PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHI 119 + S + + KW EY +S + V + E + R G ++++ + Sbjct: 55 LASNDKFSVVSQKWF--EYYRSLN--EQKVATYDKREEQVKILNRWIGGKKLSSLSSEEL 110 Query: 120 RSGVESRKHT----------PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK-- 167 + + K +S + + ++F + ++ + NP V+ PK + Sbjct: 111 QKFLFILKEKGIDGVNVGYAKNSLQSLVQVLNMVFNYCKKKNLINENPMKFVKMPKYQLS 170 Query: 168 ---------TEGIRPWTKEDMQQFKSF--WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQH 216 + + T ++++ F ++ E + F L Y+G S++ Q Sbjct: 171 LKDLKESVNSLEDKFLTVDELRAFLNYGIVYEELPMCVLFHVLFYTGCCVSEALALQPQD 230 Query: 217 LQNNI-----------------FSIKTQKT-GTIITVELPD-------GFMKLLAMTPIG 251 + F I+T KT + V + + +L T Sbjct: 231 IDFERNEILFYKQTAVKGKSKDFRIETTKTVSSARRVPVTPLVMEKLQELIDVLNKTKRN 290 Query: 252 -----KETFFI-----NNDKQKMNATQFSIWFKAKATKAGVNKSAHG--VRKFSATISAD 299 ET+ + K + G+NK H R A++ A+ Sbjct: 291 SNFVVDETYLFVYLDPGKRGVPYRREYVNDHVKRCVERCGINKDFHTHLARHTMASLVAE 350 Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRL 331 + L G ++ Y +L Sbjct: 351 Y-CSWDVLKDRLGHTDSTTSKIYRHLTSTEKL 381 >gi|262381977|ref|ZP_06075115.1| integrase/site-specific recombinase [Bacteroides sp. 2_1_33B] gi|301310515|ref|ZP_07216454.1| site-specific recombinase, phage integrase family [Bacteroides sp. 20_3] gi|262297154|gb|EEY85084.1| integrase/site-specific recombinase [Bacteroides sp. 2_1_33B] gi|300832089|gb|EFK62720.1| site-specific recombinase, phage integrase family [Bacteroides sp. 20_3] Length = 310 Score = 93.9 bits (232), Expect = 3e-17, Method: Composition-based stats. Identities = 48/304 (15%), Positives = 104/304 (34%), Gaps = 41/304 (13%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGD-----FDYRKITTKHIRSGVESRKH 128 I++ + + +S S++ + IR SG K + + + Sbjct: 13 YIAQLNREKRY-----SSAKSYQDALNSFIRYSGTDCIAYSAINKDNLRRYEAYLLENGC 67 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCL------SVERPKRKTEGIRPWTKEDMQQF 182 ++ ++ +R ++ AV P L VE ++K+ ED+ + Sbjct: 68 MRNTISTYMRRLRCIYNKAVENGKAEFIPTLFKGIFTGVESKRKKS-----LPIEDLHRL 122 Query: 183 KSFWSEGSQPR---LAFEFL-LYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP 238 + E + R LA + L+ G+ D +++N I QKTGT + +E+ Sbjct: 123 MTVPVEDGKQRKTQLALCLMFLFGGMSFVDFAHLKTGNIKNGILDYNRQKTGTPMRLEIL 182 Query: 239 D----GFMKLLAMTPIGKETFFINNDKQKMNAT----------QFSIWFKAKATKAGV-- 282 + + +L F + +F+ KA AG+ Sbjct: 183 ETAETMYKELSGEKVRDSGYLFPFLSGTREGREEYLEYNAALFRFNRNLKALKEFAGITS 242 Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342 + +++ +R A + + G K++ + Y + ++ NS V Sbjct: 243 DVTSYTIRHSFAMTLKEQNVPIEMISELLGHKSIKTTQIYLRSFSLGKMTEVNSACFGGV 302 Query: 343 VDSD 346 + + Sbjct: 303 YNYE 306 >gi|253563520|ref|ZP_04840977.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] gi|251947296|gb|EES87578.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] gi|301162178|emb|CBW21723.1| putative phage integrase protein [Bacteroides fragilis 638R] Length = 330 Score = 93.9 bits (232), Expect = 3e-17, Method: Composition-based stats. Identities = 34/282 (12%), Positives = 93/282 (32%), Gaps = 21/282 (7%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHT 129 L++ + + + + + + ++++ ITT IR+ + E + + Sbjct: 55 LLNSFISAKKIEGCSEKTLTYYRNTIERLLVSL-SLAICHITTTDIRTYLSNYQEEHQSS 113 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 + F W ++Y+A +P + + K + + E ++Q + + Sbjct: 114 KVTIDNMRRIFSSFFAWLEDEDYIAKSPVRRIHKVKTDSLVKEVLSDEQLEQLRDSCTT- 172 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT----QKTGTIITVELPDG----F 241 + +FL +G+R + + + + F + K V Sbjct: 173 KRDLAIIDFLSSTGIRVGELVKLNREDID---FHERQCVVFGKGNKERVVYFNARTKLHL 229 Query: 242 MKLLAMTPIGKETFFINNDKQK--MNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISA 298 + L F++ + + + + + K H R+ AT++ Sbjct: 230 QQYLNGRTDDNPALFVSLHSPHTRLTISGVEVRIRKLGHTLSMPKVHPHKFRRTLATMAI 289 Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340 D G ++ G +D Y ++ + + + + + Sbjct: 290 DKGMPIEQVQRLLGHVRIDTTLHYA-IVNQNNVKLAHKKYLG 330 >gi|254437403|ref|ZP_05050897.1| site-specific recombinase, phage integrase family protein [Octadecabacter antarcticus 307] gi|198252849|gb|EDY77163.1| site-specific recombinase, phage integrase family protein [Octadecabacter antarcticus 307] Length = 372 Score = 93.9 bits (232), Expect = 3e-17, Method: Composition-based stats. Identities = 49/322 (15%), Positives = 113/322 (35%), Gaps = 20/322 (6%) Query: 9 PFVTKERTRHGKIIYYFRK---GHGRRIRL-PYPHESTFIPAYMSALTGSTPKREYINSP 64 + + K +YF+K G +RI + +P S + R + Sbjct: 38 KGLVLFVGKRSKT-WYFQKDVGGQTKRILIGRFPIISAQAARQTALGFALEMGRGAGKAA 96 Query: 65 RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124 + TL+ + Y + ++I + ++ +I+ + + Sbjct: 97 QIGAPTLEAAMEGYLARPKLR--SETNKIGMRAQLSLHLKDWMRLPLDEISKGMMVRRHQ 154 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 + +PS+A L S R ++ A R +A P +++E + K +G ++ Sbjct: 155 AMSGSPSAANHVLRSFRAIYNHARRTCDLAECPTMAIEWFEDKPDGRIIENLRHWRKTID 214 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244 R+ +E LL++GLR ++ + + + K G + + ++ Sbjct: 215 DLPNPIH-RVFYELLLFTGLRKTEVFTLKWDQIHEDRIHLPMTKNGRSFDLPILQLHHEI 273 Query: 245 LAMT-PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGAT 303 LA P+ ++ F ++ + + + + H R+ AT++ +AG Sbjct: 274 LAPLRPLSRDWVF------PSPKSETGHITRPER----LKYNPHMHRRTFATVAMEAGVL 323 Query: 304 AHELMATYGWKTVDQA-ETYTK 324 + + + Y K Sbjct: 324 EEIVGRLLNHTPLSITGQRYVK 345 >gi|15964806|ref|NP_385159.1| putative integrase protein [Sinorhizobium meliloti 1021] gi|15073984|emb|CAC45625.1| Putative integrase [Sinorhizobium meliloti 1021] Length = 310 Score = 93.9 bits (232), Expect = 3e-17, Method: Composition-based stats. Identities = 44/267 (16%), Positives = 88/267 (32%), Gaps = 14/267 (5%) Query: 67 KPTTLKWLISEYRKSAHWGSLAVNSR-ISFESYFDQIIRKSGDFDYRKITTKHIRSGVES 125 K TTL L+ Y W +F D+I+ + + + + + Sbjct: 37 KETTLAELLQRY-ADILWDEGRHKYNVKAFIGELDEILLGARFSAFSQELLDGLIGALRK 95 Query: 126 RKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 R ++ ++ + + ++ L + A + + P +R K K +R ++ + Sbjct: 96 RGNSNATINRKMAALGKLLRKAYKMGDIHNLP--EFKRQKEKAGRLRFLEADEEEVLFRE 153 Query: 186 WSEGSQPRLAFEFLLY-SGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244 + S+ L L +G R ++ + + K+G TV L Sbjct: 154 IASRSELYLYLSIFLVDTGARLGEAIALKWNDIHEGRATFWVTKSGRSRTVPLTVRAKDA 213 Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV----NKSAHGVRKFSATISADA 300 L F D+QK + + A AG+ + H +R A+ Sbjct: 214 LKRVADRSPGPFSRIDQQK-----YRAVWNAAKVDAGLGNEDDLVPHILRHTCASRLVRG 268 Query: 301 GATAHELMATYGWKTVDQAETYTKGAD 327 G + G +T++ Y A Sbjct: 269 GIDLRRVQMWLGHQTLEMTMRYAHLAS 295 >gi|172034883|ref|YP_001798679.1| integrase/recombinase [Cyanothece sp. ATCC 51142] gi|171701647|gb|ACB54625.1| integrase/recombinase [Cyanothece sp. ATCC 51142] Length = 362 Score = 93.9 bits (232), Expect = 3e-17, Method: Composition-based stats. Identities = 44/298 (14%), Positives = 83/298 (27%), Gaps = 68/298 (22%) Query: 101 QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLS 160 + R R + R VE + + ++ LT +R + AV + + NP L Sbjct: 52 HVQRLHPLDATRDDIKLYRRWLVEIQDYKCATIALKLTVVRRFYAGAVERGLILANPALG 111 Query: 161 VERPKRKTEGIRP---WTKEDMQQFKSFWSE-----GSQPRLAFEFLLYSGLRCSDSCRA 212 ++ P+ + + ++ + G + R ++ G R + RA Sbjct: 112 IKPPRENIDPAERINYLEEAEVTGLLASLPTENTIGGLRDRFLVAVMVLEGCRTVEMHRA 171 Query: 213 GVQHL--QNNIFSIKTQKTGTIITVELPDGFMKLLAM----------TPIGKETFFI--- 257 + + + + I+ + V L KLL G FI Sbjct: 172 SIGDIVKRGSDIGIRVSGKRSRRIVPLTPDLAKLLNKYLQARKRSGEALNGDTPLFIALD 231 Query: 258 -NNDKQKMNATQFSIWFKAKATKAGVN--------------------------------- 283 +++ AG+ Sbjct: 232 KRTYGGRLSRRSIQRVIDKYLRAAGLKEQPTKHKSKKRASNKSHQPSNGEKQNSSQSASA 291 Query: 284 -----------KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 SAH +R + T++ AG+ ++ G Y ADR R Sbjct: 292 KSHKFQQPQRQLSAHSLRHTAGTLAIRAGSDLRQVQDLLGHADPRTTALYAHVADRWR 349 >gi|325661848|ref|ZP_08150469.1| hypothetical protein HMPREF0490_01205 [Lachnospiraceae bacterium 4_1_37FAA] gi|325471826|gb|EGC75043.1| hypothetical protein HMPREF0490_01205 [Lachnospiraceae bacterium 4_1_37FAA] Length = 322 Score = 93.9 bits (232), Expect = 3e-17, Method: Composition-based stats. Identities = 36/265 (13%), Positives = 88/265 (33%), Gaps = 15/265 (5%) Query: 88 AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH----TPSSAIQFLTSMRVL 143 + + + D++++K RKI+T+ IR + + + + ++ Sbjct: 61 SERTIQYYSVTVDKMLQKI-QTPVRKISTEEIRKYLVDYQKINDCSKVTVDNVRRNISSF 119 Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSG 203 F W ++Y+ +P + + K K + E ++ + + + L +G Sbjct: 120 FSWLEEEDYILKSPMRRIHKIKTKQPVKEIISDEAIEMLRDHCQCP-RDLAMIDLLYSTG 178 Query: 204 LRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDG----FMKLLAMTPIGKETFFIN 258 +R + + + + K V + L+ F+ Sbjct: 179 IRVGELVNLNISDVDFEARECVVFGKGDKERRVYFDAKAKLHLLNYLSERKDNNPALFVT 238 Query: 259 ND--KQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKT 315 D ++ + I + K + K H R+ AT + D G ++ G Sbjct: 239 LDVPYDRLKISGVEIRIRTLGRKLNMEKIHPHKFRRTMATRAIDKGMPIEQVQKLLGHSQ 298 Query: 316 VDQAETYTKGADRIRLGIKNSRRIS 340 +D Y ++ + + + I+ Sbjct: 299 IDTTMQYA-IVNQTNVKTSHQKFIA 322 >gi|291548984|emb|CBL25246.1| Site-specific recombinase XerD [Ruminococcus torques L2-14] Length = 397 Score = 93.9 bits (232), Expect = 3e-17, Method: Composition-based stats. Identities = 62/377 (16%), Positives = 111/377 (29%), Gaps = 59/377 (15%) Query: 9 PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68 ++ K G Y + P P P+ E K Sbjct: 24 KYLYKYVDAFGNTKYVYAWRLTP--TDPTPKGKREKPSLRELEQQIRRDIEDGIDSTGKK 81 Query: 69 TTLKWLISEY-RKSAHWGSLAVNSRISFESYFDQI-IRKSGDFDYRKITTKHIRSGVESR 126 T L Y +++A ++ +++ E + K G I + Sbjct: 82 MT---LCQLYAKQNAQRANVKKSTQKQREQLMRLLKEDKLGARSIDTIKPSDAKEWALRM 138 Query: 127 KHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPC--LSVERPKRKTEGIRPWTKEDMQQ 181 K ++ S++ F A++ + V NP E + T+ T+E Q Sbjct: 139 KDKGFSYNTINNHKRSLKASFYIAIQDDCVRKNPFDFKLSEVLENDTKEKVALTEEQEQA 198 Query: 182 FKSFWSEGSQPRLAFE---FLLYSGLRCSDSCRAGVQHLQ----------------NNIF 222 SF + ++ LL +GLR S+ C V + + Sbjct: 199 LLSFIKTDNVYHNHYDDVLILLKTGLRISELCGLTVADIDFKNEVVIIDHQLLKSKEQGY 258 Query: 223 SIKTQKTGTIIT-VELPDG----FMKLLAMTPIGKET--------FFINNDKQKMNATQF 269 I+T KT + I V L F +++ P + F+N+ + A + Sbjct: 259 YIETPKTKSGIRQVPLSRETIQAFQQVMKKRPKAEPFVIDGQSNFLFVNHKGKPKVAIDY 318 Query: 270 SIWFKAKATKAGVNK--------SAHGVRKFSATISADAGATAHELMATYGWKTVD---- 317 + F K + + H +R T A +L G + Sbjct: 319 NALFVRMVKKYNKHHKDNPLPHITPHTLRHTFCTRLASKNMNPKDLQYIMGHSNISITMN 378 Query: 318 ---QAETYTKGADRIRL 331 A T ++ RL Sbjct: 379 WYAHASIDTAKSEVQRL 395 >gi|227890200|ref|ZP_04008005.1| possible bacteriophage integrase [Lactobacillus johnsonii ATCC 33200] gi|227849295|gb|EEJ59381.1| possible bacteriophage integrase [Lactobacillus johnsonii ATCC 33200] Length = 391 Score = 93.9 bits (232), Expect = 3e-17, Method: Composition-based stats. Identities = 52/309 (16%), Positives = 106/309 (34%), Gaps = 50/309 (16%) Query: 65 RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGV 123 ++K + L + ++ + ++ + FD +I G+ KIT ++ Sbjct: 66 KQKQIKVAELRELWFENYK-TQVKESTANKNKQVFDNHVIPAFGNQYIDKITVAELQKWA 124 Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR-----PWTKED 178 + + + LF++ +R YV+ NP + PK+ + R +T+++ Sbjct: 125 DRKAKQIVKYRDAINEFNALFEYGIRLNYVSENPLKRIIIPKKTSRPRRDTEHNVYTRDE 184 Query: 179 MQQFKSFWSE-GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT-------- 229 + QF + G P F+ L +GLR S++ + ++ KT Sbjct: 185 LNQFLEVAKDYGLVPYTYFKLLSATGLRKSEALALTWSDINLTAGTLSVNKTLAYGLNGK 244 Query: 230 ---------GTIITVELPDGFMKLL----AMTPIGKETFFINNDKQKMNATQFSIWFK-- 274 + + + DG ++L I + F N + ++ W K Sbjct: 245 TIIQPPKSPKSKRILPISDGLKEVLIDYKRKQKIISKELFHTNKGTYLRISKPDQWLKSI 304 Query: 275 ------AKATKAG-----------VNKSAHGVRKFSATIS-ADAGATAHELMATYGWKTV 316 KA A + + HG R AT+ A+ + G + + Sbjct: 305 YAKDHEEKAEYAKKYNLKEPQPDLRHITVHGFRHTFATLLIAETNVKPKTVQMLLGHENI 364 Query: 317 DQA-ETYTK 324 + YT Sbjct: 365 QMTLDIYTH 373 >gi|15921682|ref|NP_377351.1| integrase/recombinase [Sulfolobus tokodaii str. 7] gi|15622469|dbj|BAB66460.1| 284aa long hypothetical integrase/recombinase [Sulfolobus tokodaii str. 7] Length = 284 Score = 93.9 bits (232), Expect = 3e-17, Method: Composition-based stats. Identities = 41/245 (16%), Positives = 83/245 (33%), Gaps = 24/245 (9%) Query: 84 WGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVL 143 + + +++ + IR + T + +E R+ +A ++ ++ Sbjct: 45 YIRKDPRTVTTYD--LNNWIRNI----LSRETKSKNENEIEKRRKKSVTARHYIIAVLRF 98 Query: 144 FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSG 203 KW V + P + P+ + + IR ++E++ + K + + RL + LL +G Sbjct: 99 LKWLG----VDVKPTI----PRIRRKEIRALSEEEIVKIKENVKK-LKDRLLIQLLLDTG 149 Query: 204 LRCSDSCRAGVQHLQNNI--FSIKTQKTGTIITVELPDGFMKLLAMTPI--GKETFFINN 259 LR + + ++ K G V + +LL N Sbjct: 150 LRSKELLSIKKSDINIERRYIIVRNTKNGEERIVFFTEETARLLKSYLRNIEDNGILFN- 208 Query: 260 DKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319 M K K G++ H +R AT + G + G K + Sbjct: 209 ----MTYHALYRKLKRLGKKLGIDLRPHILRHTFATQAIRKGMPLPVVQKLLGHKDIRTT 264 Query: 320 ETYTK 324 + YT Sbjct: 265 QIYTH 269 >gi|331700415|ref|YP_004397374.1| integrase family protein [Lactobacillus buchneri NRRL B-30929] gi|329127758|gb|AEB72311.1| integrase family protein [Lactobacillus buchneri NRRL B-30929] Length = 383 Score = 93.9 bits (232), Expect = 3e-17, Method: Composition-based stats. Identities = 54/287 (18%), Positives = 101/287 (35%), Gaps = 44/287 (15%) Query: 100 DQIIRKSGDFDYRKITTKHIRSGVESR-KHTPSSAIQFLTSMRVLFKWAVRQEYVA-INP 157 + I+ + G+ R IT ++ V K + ++ +F +A++ Y+ NP Sbjct: 98 NHILPELGNKRIRTITIAQVQRAVNKWFKQATYNYKRWYEYTMAIFDYALKHGYMHGDNP 157 Query: 158 CLSVERPKRK-TEGIRP---WTKEDMQQFKSFWS--EGSQPRLAFEFLLYSGLRCSDSCR 211 + PKRK T G +P W K+ + QF S+ E + F L ++G+R + Sbjct: 158 AKMITIPKRKETWGEKPENFWDKQQLAQFFSYIDPKEELEKYTLFRVLAFAGVRRGECLA 217 Query: 212 AGVQHL----------------QNNIFSIKTQKTGTIITVELPD---------------- 239 + I+ KT V D Sbjct: 218 LTWNDVNFSKSTLSINKTLTQGMRGKQIIQPPKTKKGQRVIALDKITLNYLKQWRARQRR 277 Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISA 298 ++ L T + F N++ + + W + K + HG R SA++ Sbjct: 278 EYLMLGFNTIQRGQLIFANSNNGFKSLNTPAKWLNKIIKAHNLKKITVHGFRHTSASMLF 337 Query: 299 DAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRISSVVD 344 AGAT E+ G + YT + + + ++++ +D Sbjct: 338 AAGATIKEVQTRLGHEDAQTTLNIYTHVT--KKQDNQAAEKLANYLD 382 >gi|262382300|ref|ZP_06075437.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] gi|262295178|gb|EEY83109.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] Length = 408 Score = 93.9 bits (232), Expect = 3e-17, Method: Composition-based stats. Identities = 55/323 (17%), Positives = 113/323 (34%), Gaps = 40/323 (12%) Query: 43 FIPAYMS-ALTGST-PKREYINSPRKKPTTLKWLISEYRKSAHW------GSLAVNSRIS 94 F Y L G R +N + K T K L + +++ A + Sbjct: 80 FYQIYQDLELEGKIISARAIVNRYQGKDETFKTLYNVFKEHNDNCRKLIGTDYADITVRR 139 Query: 95 FESYFDQIIR------KSGDFDYRKITTKHIRSGVESRKH----TPSSAIQFLTSMRVLF 144 +++ ++ K D R++ + +R K ++ I+++ + + Sbjct: 140 YDNCLKYLMELVKRDYKVDDMLLREVNGELVRKFDLYLKTEKHCAQNTVIRYMKCFKKVI 199 Query: 145 KWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF---KSFWSEGSQPRLAFEFLLY 201 A+ E++ NP ++ + + + ++ ++ + + R F F +Y Sbjct: 200 NLAIANEWLTKNPFAGIKFHEVEVNK-QFLSQAEINRIWQKEFRIERLELVRDVFIFCVY 258 Query: 202 SGLRCSDSCRAGVQHLQNN-----IFSIKTQKTGTIITVEL---PDGFMKLLAMTP--IG 251 +GL D +H+ + +KT I + L P ++ P + Sbjct: 259 TGLAFIDVYNLRPEHVSEDSNGNLWIVKPREKTNNICNIPLLSIPKQILEKYKDNPYCMD 318 Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAG-ATAHELM 308 K T QKMN+ + K A G+ K + H R A++ A A + + Sbjct: 319 KGTLLPVPCNQKMNS-----YLKEIADLCGIKKNLTTHTARHSFASVIALANNVSLPNVA 373 Query: 309 ATYGWKTVDQAETYTKGADRIRL 331 G + + Y K D+ L Sbjct: 374 KMLGHSSTRMTQHYAKVLDQTIL 396 >gi|229060140|ref|ZP_04197510.1| DNA integration/recombination/invertion protein [Bacillus cereus AH603] gi|228719180|gb|EEL70790.1| DNA integration/recombination/invertion protein [Bacillus cereus AH603] Length = 249 Score = 93.9 bits (232), Expect = 3e-17, Method: Composition-based stats. Identities = 34/233 (14%), Positives = 71/233 (30%), Gaps = 32/233 (13%) Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 + + + + +R + A+ E ++ N + PK E + W ++++Q F Sbjct: 1 MRDEGLKRGTIEKIIKVIRNSLEHAIDIELISKNVAAKTKLPKADKEELTVWNEKEVQLF 60 Query: 183 KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT----------GTI 232 + S+ + F L +G+R + + + + ++T G Sbjct: 61 LKAAQD-SRYSIVFHLALVTGMRQGELLGLRWKDVDLEKGHLTIRQTLSHDGKTFLLGGK 119 Query: 233 ITVELPDGFMKLLAMTPIGK-------------------ETFFINNDKQKMNATQFSIWF 273 I L + + + K + +N Sbjct: 120 IKSSLRKILLPASTIAKLRKHRAVVLKEMLSQGGEYQENDLVMCTPSGTPINPANVRRSL 179 Query: 274 KAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324 A KA V K H +R AT+ G + G + +TY+ Sbjct: 180 NALIQKAAVPKVRFHDLRHTHATLLLAKGVNVKVISERLGHSNIKITLDTYSH 232 >gi|254438179|ref|ZP_05051673.1| site-specific recombinase, phage integrase family protein [Octadecabacter antarcticus 307] gi|198253625|gb|EDY77939.1| site-specific recombinase, phage integrase family protein [Octadecabacter antarcticus 307] Length = 376 Score = 93.9 bits (232), Expect = 3e-17, Method: Composition-based stats. Identities = 49/250 (19%), Positives = 87/250 (34%), Gaps = 17/250 (6%) Query: 88 AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWA 147 N+ + D R G +IT I++ + K + S +R L WA Sbjct: 107 KKNTVDYYRKRLDAHFR-FGRKRLDEITRTDIQTRIRKIKTSSSEQNHAFVVIRTLMNWA 165 Query: 148 VRQEYVAINPCLSVERPKRKTEGIRPWTKED-MQQFKSFWSEGSQPRLAFEFLLYSGLRC 206 VR++YV +P S++ P + T ++ +Q +K L+ +G+R Sbjct: 166 VREQYVDQSPIASMKPPTKPQARDHVLTDQELIQAYKVSLEHPYPFGPIISLLVLTGMRR 225 Query: 207 SDSCRAGVQHLQNNIFSIK----TQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQ 262 S+ + + +I K + T+ D +L P F + + Sbjct: 226 SEVASMRWDWISHGERTITIPADVTKNKRVQTLPYADLVEAVLETIPEIGPHLFPS---R 282 Query: 263 KMNATQFSIWFKAKAT-KAGV----NKSAHGVRKFSATISADAGATAHELMATYGWKTVD 317 T F+ W K+K A + + H +R+ AT A G H + Sbjct: 283 SETGTVFNGWGKSKERFDASLENIEPYTLHDLRRTFATTHAKIGTPIHVTEKLLNHISGT 342 Query: 318 Q---AETYTK 324 A Y + Sbjct: 343 ISGVAAVYNR 352 >gi|330429397|gb|AEC20731.1| site-specific recombinase, phage integrase family [Pusillimonas sp. T7-7] Length = 362 Score = 93.9 bits (232), Expect = 3e-17, Method: Composition-based stats. Identities = 46/306 (15%), Positives = 102/306 (33%), Gaps = 35/306 (11%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---- 126 ++ + Y + + +++I +I+ G + ++ + ++R Sbjct: 61 VEAALKRYLREVT-PTKRESTQIGEHKKAQALIKHLGKYSLAALSADIVAQYRDARLAGD 119 Query: 127 -----KHTPSSAIQF---LTSMRVLFKWAVRQEY---VAINPCLSVERPKRKTEGIRPWT 175 K P S L + LF A++ E+ + NP ++ RP R T Sbjct: 120 EDENGKRVPRSNNTVRLELALLGHLFTVAIK-EWGIGLPFNPVSNIRRPAPGAGRNRRLT 178 Query: 176 KEDMQQFKSFWSEGSQPRLAFEF--LLYSGLRCSDSCRAGVQHLQNNIFSIKTQ--KTGT 231 + ++ + S P ++ L +G+R S+ + + ++ + K + Sbjct: 179 PTENKRLLTAVDAYSNPMFSWIVRVALETGMRLSEIAGLRLGQVDMQKRVVRLEHTKNSS 238 Query: 232 IITVELPDGFMKLLAMT------PIGKETFFINNDKQ--KMNATQFSIWFKAKATKAGV- 282 TV L + P + F + F + AG+ Sbjct: 239 PRTVPLTKAATSVFQAALDNPLRPPETDLVFFGEPGKDGMRRPYLFDKAWSDAKKAAGLV 298 Query: 283 NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342 + H +R + + +AG + E+ A G K++ + YT R+ + Sbjct: 299 DFRFHDLRHEAVSRLVEAGLSDQEVAAISGHKSMQMLKRYTHLR-----AEDLVGRLDEL 353 Query: 343 VDSDDP 348 + P Sbjct: 354 ERRERP 359 >gi|256545162|ref|ZP_05472528.1| tyrosine recombinase XerC [Anaerococcus vaginalis ATCC 51170] gi|256399203|gb|EEU12814.1| tyrosine recombinase XerC [Anaerococcus vaginalis ATCC 51170] Length = 331 Score = 93.9 bits (232), Expect = 3e-17, Method: Composition-based stats. Identities = 39/224 (17%), Positives = 83/224 (37%), Gaps = 21/224 (9%) Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKRKTEGIRPWTKEDMQQF 182 S+ + ++++R +K+ ++ E + N + PK + T + + Sbjct: 92 NELNDNTSTRSRKISALRSFYKYLHQEIEIIDNNITEKLRNPKIQKRQPVYLTLSETEHL 151 Query: 183 KSFWSEG------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236 S+ ++ L +G+R S+ ++ ++++ FSI K T+ Sbjct: 152 LEIVSQEKNEFLKNRDMAIVFTFLTTGMRLSELVSVDLKDIKDDHFSII-GKGNKERTIY 210 Query: 237 LPDGFMKLLAMTPIGK---------ETFFINNDKQKMNATQFSIWFKAKATKAGVN---K 284 L + L+ + + FI+ KQ+++ + KAG + Sbjct: 211 LTKNCIDLIKNYIKIRKKYLKDKKIDALFISTRKQRISNRAVQSTVEKYLEKAGFDTKIY 270 Query: 285 SAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTKGAD 327 S H +R +AT+ G L G ++V + YT D Sbjct: 271 STHKLRHTAATLMYKYGNVDIRALKDVLGHESVSTTQIYTHLDD 314 >gi|139439759|ref|ZP_01773150.1| Hypothetical protein COLAER_02181 [Collinsella aerofaciens ATCC 25986] gi|133774909|gb|EBA38729.1| Hypothetical protein COLAER_02181 [Collinsella aerofaciens ATCC 25986] Length = 220 Score = 93.9 bits (232), Expect = 3e-17, Method: Composition-based stats. Identities = 36/212 (16%), Positives = 68/212 (32%), Gaps = 25/212 (11%) Query: 150 QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF----WSEGSQPRLAFEFLLYSGLR 205 + V + ++ PK + T + ++ G + E L SG R Sbjct: 4 EGIVEGDAVSAIASPKLPRDLPGVLTTQQVEALLKTPDTSTPAGLRDAAMLELLYASGAR 63 Query: 206 CSDSCRAGVQHLQNNIFSIK-TQKTGTIITVEL----------------PDGFMKLLAMT 248 S+ V+ + + +++ K V L P+ + Sbjct: 64 ISELAALNVESIGWSERTLRLWGKGSKERIVPLYRRALEATRLYIEEGRPELLAQAKRRD 123 Query: 249 PIGKET-FFINNDKQKMNATQFSIWFKAKATKAGVNKS--AHGVRKFSATISADAGATAH 305 P I+ +M+A F AT AG+ H +R AT + GA Sbjct: 124 PATGPHPLLISARGNRMSAAMLRRRFHTLATLAGIPADIAPHAMRHTFATDLLEGGADLR 183 Query: 306 ELMATYGWKTVDQAETYTK-GADRIRLGIKNS 336 + G ++ + YT DR++ + + Sbjct: 184 SVQELLGHASLSTTQIYTHLTPDRLKRAVAQA 215 >gi|78184009|ref|YP_376444.1| site-specific recombinase XerD-like [Synechococcus sp. CC9902] gi|78168303|gb|ABB25400.1| Site-specific recombinase XerD-like [Synechococcus sp. CC9902] Length = 291 Score = 93.9 bits (232), Expect = 3e-17, Method: Composition-based stats. Identities = 35/267 (13%), Positives = 83/267 (31%), Gaps = 30/267 (11%) Query: 88 AVNSRISFESYFDQIIR----KSGDFDYRKITTKHIRSGVESRKH-------TPSSAIQF 136 + +R + + R D R++ +++ ++ + P + + Sbjct: 15 SQETRDGYMRDLRHLTRWRDRHYPDLLIRELDPPMVQNWIDDLRGQVDAGEIKPRTFNRR 74 Query: 137 LTSMRVLFKWAVRQEY-----VAINPCLSVERPKRKTEGIRPWTKEDMQQF-------KS 184 L+ + LF+WA + NP + + + +++D+ + + Sbjct: 75 LSVVSALFRWASEPSRSGVTGIGRNPVPG-KSHLVGGKEGKAMSEDDLSKLLGVVASSRD 133 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVELPDG 240 + ++ + G R S+ R + + + + D Sbjct: 134 RSARNNRDFVLIRGSYLLGARVSEVARLQWCDVEPLADGGQIHLLGKGSKARTVRVSADT 193 Query: 241 FMKLLAMTPIGKETFFI--NNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISA 298 ++ G+ + + K + + + KAGV+ H +R AT + Sbjct: 194 LQLFESLGRAGESDYLFPSSRTKSHLTRQAINYTMRKWGEKAGVDVHPHKLRHSHATHAI 253 Query: 299 DAGATAHELMATYGWKTVDQAETYTKG 325 G L T G + D Y K Sbjct: 254 RRGTNVFCLQHTLGHSSTDTTSGYVKQ 280 >gi|194335806|ref|YP_002017600.1| integrase family protein [Pelodictyon phaeoclathratiforme BU-1] gi|254799350|sp|B4SDZ2|XERC_PELPB RecName: Full=Tyrosine recombinase xerC gi|194308283|gb|ACF42983.1| integrase family protein [Pelodictyon phaeoclathratiforme BU-1] Length = 336 Score = 93.9 bits (232), Expect = 3e-17, Method: Composition-based stats. Identities = 44/289 (15%), Positives = 89/289 (30%), Gaps = 49/289 (16%) Query: 85 GSLAVNSRISFE----SYFDQIIRKSGDFDYRKITT--------KHIRSGVESRKHTPSS 132 +L+ N+ I++ +F + + G D + + + R S Sbjct: 31 KNLSPNTVIAYRTDLFQFFSFLAQHLGLADLSLFDPEQVTTVEVRLFMAALIERGVRQRS 90 Query: 133 AIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS-- 190 + L S++ +++ ++ + ++ P+ T++ ++F + S Sbjct: 91 IARKLASVKSFYRYLQESGHIRNSLFSALATPQYPKRVPGFLTEQQTEKFFNELLPQSAQ 150 Query: 191 -----------------QPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK-TQKTGTI 232 + R E L SGLR S+ V L +K T K Sbjct: 151 GFRKPEKNELDESFICERDRSILELLYSSGLRISELIGLKVGELDLERGYVKLTGKGRKQ 210 Query: 233 ITVELPDGFMKLL-----------AMTPIGK----ETFFINNDKQKMNATQFSIWFKAK- 276 V + + L M G F+ +K+ + Sbjct: 211 RIVPVGQQAVDALKKYFEVRRNFFRMKRTGDAGELLHVFVTKSGKKLYPMLVQRLTRKYL 270 Query: 277 -ATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 + K+ H +R AT ++GA + + G + E YT Sbjct: 271 TSVTDQKKKNPHLLRHTFATHLLNSGADLNSVSDMLGHSNLSTTEIYTH 319 >gi|241992601|gb|ACS73655.1| IntI1 [uncultured bacterium] Length = 315 Score = 93.9 bits (232), Expect = 3e-17, Method: Composition-based stats. Identities = 42/306 (13%), Positives = 92/306 (30%), Gaps = 62/306 (20%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHT 129 ++ + R+ + ++ + ++ + IR G + + + + + RK + Sbjct: 16 VLDQLRERIRYLHYSLRTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75 Query: 130 PSSAIQFLTSMRVLFK--WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 S+ Q L ++ + ++ + RP+ T +++ + F Sbjct: 76 VSTHRQALAALLFFYGKVLCTDLPWLQ-----EIGRPRPSRRLPVVLTPDEVVRILGFL- 129 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQKTGTIITVELPDGFMKLL 245 EG RL + L +G+R S+ + V+ ++ K + LP+ L Sbjct: 130 EGEH-RLFAQLLYGTGMRISEGLQLRVKDLDFDRGTIIVREGKGSKDRALMLPESLAPSL 188 Query: 246 AMTPIGKETFFINN---------------------------------------------D 260 +++ + Sbjct: 189 REQLSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVR 248 Query: 261 KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318 + M F FK +AG+ K + H +R AT +G + G V Sbjct: 249 RHHMYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVPT 308 Query: 319 AETYTK 324 YT Sbjct: 309 TMIYTH 314 >gi|86139170|ref|ZP_01057740.1| tyrosine recombinase [Roseobacter sp. MED193] gi|85824014|gb|EAQ44219.1| tyrosine recombinase [Roseobacter sp. MED193] Length = 312 Score = 93.9 bits (232), Expect = 3e-17, Method: Composition-based stats. Identities = 39/236 (16%), Positives = 76/236 (32%), Gaps = 19/236 (8%) Query: 107 GDFDYRKITTKHIRSGVESRKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVER 163 G +ITT +RS + ++ S + L++++ ++W +E + L+ Sbjct: 59 GLGALARITTSDMRSWMAQERNAGTGARSLARRLSAVKSFYRWLAEREGFELTAVLAARA 118 Query: 164 PKRKTEGIRPWTKEDMQQFKSFWS-------EGSQPRLAFEFLLYSGLRCSDSCRAGVQH 216 PK + + RP ++ + ++ L GLR S++ + Sbjct: 119 PKFQKKLPRPLDEDAARAVIETVELQSNTDWIAARDVAVVTLLYGCGLRISEALALTGKT 178 Query: 217 LQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPI-------GKETFFINNDKQKMNATQF 269 K G V + + +A F +N Q Sbjct: 179 APLPSSLRILGKGGKERLVPVIAAAREAVARYIALSPYPNEADGPLFRGARGGALNPRQI 238 Query: 270 SIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 + G+ SA H +R AT +AG + G ++ + YT Sbjct: 239 QGAMAQARAQLGLPASATPHALRHSFATHLLEAGGDLRAIQELLGHASLSTTQAYT 294 >gi|323169298|gb|EFZ54974.1| integrase [Shigella sonnei 53G] Length = 312 Score = 93.9 bits (232), Expect = 3e-17, Method: Composition-based stats. Identities = 49/301 (16%), Positives = 98/301 (32%), Gaps = 12/301 (3%) Query: 28 GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRK-SAHWGS 86 G+RIR + +S + L NS ++P ++ LI + K Sbjct: 6 RKGKRIRKKFKTKSDAVLYERWVLAQQHNNEWKGNSIDRRPLSV--LIDLWWKYHGQLMK 63 Query: 87 LAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKW 146 N+R+ + + + T+ +R + PS+ + + ++ +F Sbjct: 64 SGHNTRLKLLRLSEAMDDPCVHKLNTTMLTE-LRVSRIEQGIQPSTINREIGALSAMFTA 122 Query: 147 AVRQEY-VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLR 205 + + + NP ++ K + +K + Q +E RLA E LL +G R Sbjct: 123 LISSGHFLNDNPVQGLKGMKVNEREMGYLSKSECVQLLDALAENPDERLAVEILLSTGAR 182 Query: 206 CSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMN 265 + + + + + K TV + + + + G + F D Sbjct: 183 WGEVAALEQRRVLHCRITFSKTKNSKNRTVPISESLFE--KIKKRGGKLVFPTLD----- 235 Query: 266 ATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 + K A ++ H +R A+ G L G + Y Sbjct: 236 YSLVRDVIKTVAPDVPDGQAVHALRHTFASHFMMNGGNILTLQKILGHAKIQTTMIYAHL 295 Query: 326 A 326 A Sbjct: 296 A 296 >gi|305667872|ref|YP_003864346.1| shufflon-specific DNA recombinase [Escherichia coli] gi|304655621|emb|CBM42286.1| shufflon-specific DNA recombinase [Escherichia coli] Length = 374 Score = 93.9 bits (232), Expect = 3e-17, Method: Composition-based stats. Identities = 46/274 (16%), Positives = 95/274 (34%), Gaps = 19/274 (6%) Query: 65 RKKPTTLKWLISEYRKSAHWGS---LAVNSRIS---FESYFDQIIRKSGDFDYRKITTKH 118 + + TL + +Y K+ L R++ ++ + + D + Sbjct: 6 KIRKMTLNRALDKYLKTVSIHKKGHLQEFYRVNVIKRHPMAERYMDEITTVDIATYRDQR 65 Query: 119 IRSG--VESRKHTPSSAIQFLTSMRVLFKWA-VRQEYVAINPCLSVERPKRKTEGIRPWT 175 + R+ T ++ L + LF A V +NP V +PK + R T Sbjct: 66 LAQINPRTGRQITGNTVRLELALLSSLFNIASVEWGTCRMNPVELVRKPKISSGRDRRLT 125 Query: 176 KEDMQQF-KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQKTGTI 232 + ++ + F + Q + F L + +R + +HL + + K G Sbjct: 126 SGEERRLSRYFRDKNQQLYVIFHLALETAMRQGEILTLRWEHLDLQHGVAHLPETKNGLP 185 Query: 233 ITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRK 291 V L L + P IN + ++ F ++ + N H +R Sbjct: 186 RDVPLSRKARNYLQILPQQ-----INGNVFSYTSSGFKSAWRTALLDLKIENLHFHDLRH 240 Query: 292 FSATISADAG-ATAHELMATYGWKTVDQAETYTK 324 + + + G E+ A G ++++ + YT Sbjct: 241 EAISRFFELGTLNVIEVAAISGHRSLNMLKRYTH 274 >gi|284040174|ref|YP_003390104.1| integrase family protein [Spirosoma linguale DSM 74] gi|283819467|gb|ADB41305.1| integrase family protein [Spirosoma linguale DSM 74] Length = 378 Score = 93.9 bits (232), Expect = 3e-17, Method: Composition-based stats. Identities = 43/216 (19%), Positives = 73/216 (33%), Gaps = 12/216 (5%) Query: 131 SSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS 190 +SA + AV + INP +V+ RK T ++Q + Sbjct: 164 NSAKGYFVIFGTALNRAVDDKLFTINPNDTVKGLTRKETQREFLTLAELQSLAKTECDLP 223 Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQ----HLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246 + A F +GLR SD + + + QKT + T+ L + LLA Sbjct: 224 YLKRAALFSALTGLRYSDVAKLTWSEVYEDVNGSYIRFMQQKTEGVETLPLNETARILLA 283 Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATA 304 + F + S W A ++G+ + + H R AT+ G Sbjct: 284 E--RSEGVVFPELLYSSWQNQKLSEW----AHRSGIKRRITFHAFRHTFATLQLMEGTDL 337 Query: 305 HELMATYGWKTVDQAETYTKGADRIRLGIKNSRRIS 340 + + G + + + Y K D + N I Sbjct: 338 YTISKLLGHRNITTTQIYAKIVDTQKRAAVNRLSIE 373 >gi|169334405|ref|ZP_02861598.1| hypothetical protein ANASTE_00805 [Anaerofustis stercorihominis DSM 17244] gi|169259122|gb|EDS73088.1| hypothetical protein ANASTE_00805 [Anaerofustis stercorihominis DSM 17244] Length = 353 Score = 93.9 bits (232), Expect = 4e-17, Method: Composition-based stats. Identities = 50/331 (15%), Positives = 105/331 (31%), Gaps = 36/331 (10%) Query: 41 STFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD 100 +F A+ +T +T + I ++LI + L + S D Sbjct: 24 PSFANAFFRGITNNTSIKTRIAYAMDLKIFFEYLIE---NHPLFTHLKDI-KDISLSDLD 79 Query: 101 QIIR-KSGDFD--YRKITTKHI--RSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAI 155 + DF T +H + ++ ++ L+++R +K+ ++E + Sbjct: 80 NVKAVDLEDFTEYLSYYTKEHYKNENSKVQLSNSNRGKMRKLSTLRSFYKYYFKKEMIKT 139 Query: 156 NPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG---------------SQPRLAFEFLL 200 NP + V+ PK + I ++ G + L+ Sbjct: 140 NPTVLVDLPKNYEKPIIRLEPNEVANLLDEIESGKSLTPAQLKYHNKTKVRDLAIVTLLV 199 Query: 201 YSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDGFMKLLAM--------TPIG 251 +G+R S+ V + NN + T+K G + +P+ + L Sbjct: 200 GTGIRISECVGLNVNDVDFNNDSFVVTRKGGNKTILYMPEEVREALLRYLRETRENIDTE 259 Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMA 309 + F++ ++M + K N S H +R T + + Sbjct: 260 ESALFLSLQNKRMTQSSIQKMLKKYTKIVVPLKNISPHKLRSTYGTNLYKETGDIYLVAD 319 Query: 310 TYGWKTVDQA-ETYTKGADRIRLGIKNSRRI 339 G K V+ + Y + R ++ Sbjct: 320 VLGHKDVNTTKKHYAAIEEERRKIAARVTKL 350 >gi|41057040|ref|NP_957522.1| putative integrase [Streptococcus thermophilus] gi|34980337|gb|AAQ84064.1| putative integrase [Streptococcus thermophilus] Length = 308 Score = 93.9 bits (232), Expect = 4e-17, Method: Composition-based stats. Identities = 46/277 (16%), Positives = 94/277 (33%), Gaps = 27/277 (9%) Query: 83 HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH---TPSSAIQFLTS 139 ++ + + +++ Q G R+ + + + + K P++ ++T+ Sbjct: 30 NYLDASPKTVETYKKALRQFFNYLGLHGIRQPQREDVLAFRDDLKASGLKPTTVQNYITA 89 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKR-KTEGIRPWT----KEDMQQFKSFWSEGSQPRL 194 R+ FKW ++ N V+ K K T KE + K+ EG + Sbjct: 90 TRIFFKWTEQEGLYP-NIAEHVKGAKLDKNHKKDYLTSRQAKEVLANIKTDTEEGLRNYA 148 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQ---NNIFSIKTQKTGTI------ITVELPDGFMKLL 245 ++ GLR + RA V L+ N K I+ + L Sbjct: 149 ILSLMVTGGLRTIEVSRADVGDLRTVGENTVLFVQGKGREEKTEYIKISAPVEKAIRTYL 208 Query: 246 AM--TPIGKETFFI----NNDKQKMNATQFSIWFKAKATKAGVN---KSAHGVRKFSATI 296 ++ F N+ +++ S K AG + +AH +R + T+ Sbjct: 209 KARDLTTEEQPLFTSTSNNSRGKRITTRTVSAVVKNALKNAGYDSARLTAHSLRHTAITL 268 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI 333 + AG E+ ++ Y D+ + + Sbjct: 269 ALLAGREITEVQQFARHANLNTTMIYNHALDQAKTAV 305 >gi|103487881|ref|YP_617442.1| phage integrase [Sphingopyxis alaskensis RB2256] gi|98977958|gb|ABF54109.1| phage integrase [Sphingopyxis alaskensis RB2256] Length = 242 Score = 93.9 bits (232), Expect = 4e-17, Method: Composition-based stats. Identities = 36/230 (15%), Positives = 81/230 (35%), Gaps = 17/230 (7%) Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS- 187 P A + L +++ + A + + ++P L ++ K + R + +++ + Sbjct: 5 GPGVAGRCLGTLQAIIGHAKHKGLLEVHPTLGAKKLASKKKTRR-LSVAEIEMMGKAIAH 63 Query: 188 -----EGSQPRLAFEFLLYSGLRCSD--SCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240 E LL +G R + + R H + K G I + Sbjct: 64 AEASGENPVALGVLRTLLLTGYRREEGQAMRRSWLHPDAGYVAFPDTKGGAQIR-AIGPA 122 Query: 241 FMKLLA--MTPIGKETFFINNDK-QKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATI 296 +++L G F + A S + AG+ + H +R ++ Sbjct: 123 AVRVLQDQAEIAGNPHLFPSTIGDGPFTA--VSECLRRVCVLAGIEGVTPHTLRHTFGSV 180 Query: 297 SADAGATAHELMATYGWKTVDQAETYTKGADRIRLGI-KNSRRISSVVDS 345 + D G + + A G + + + Y + ++L + + S I ++ S Sbjct: 181 AGDLGFSELTIRAMLGHASQNVTQDYVHIDEALKLAVRRTSDEIERLLAS 230 >gi|317131475|ref|YP_004090789.1| integrase family protein [Ethanoligenens harbinense YUAN-3] gi|315469454|gb|ADU26058.1| integrase family protein [Ethanoligenens harbinense YUAN-3] Length = 330 Score = 93.9 bits (232), Expect = 4e-17, Method: Composition-based stats. Identities = 34/262 (12%), Positives = 83/262 (31%), Gaps = 14/262 (5%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVES----RKHT 129 L+ + + + S +++ +I R+I T +R + + R + Sbjct: 55 LLEIFISAKRVEGCSEKSLKYYDATIRHMIVDIA-KPVREIDTGDLRIYLANYQKLRNSS 113 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 + F W ++Y+ +P + + K + ++ E +++ + E Sbjct: 114 KVTIDNMRRIFSSFFGWLEDEDYILKSPVRRIHKIKTEKTIKDTFSDEGLEKLRDACDE- 172 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDG----FMKL 244 + + L +G+R + + + + + + K G V Sbjct: 173 LRDLAMVDLLASTGMRVGELVQLNREDMNFHERECLVLGKGGKERMVYFDARTKIHLRNY 232 Query: 245 LAMTPIGKETFF--INNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAG 301 L F + + +++ + A + K H R+ AT + D G Sbjct: 233 LDSRSDDNPALFVSLTSPHERLLIGGVETRIREIGKNAALQKVHPHKFRRTLATRAIDKG 292 Query: 302 ATAHELMATYGWKTVDQAETYT 323 ++ G +D Y Sbjct: 293 MPIEQVQRLLGHVKIDTTMHYA 314 >gi|261343362|ref|ZP_05971007.1| site-specific recombinase, phage integrase family [Providencia rustigianii DSM 4541] gi|282568500|gb|EFB74035.1| site-specific recombinase, phage integrase family [Providencia rustigianii DSM 4541] Length = 377 Score = 93.9 bits (232), Expect = 4e-17, Method: Composition-based stats. Identities = 54/356 (15%), Positives = 114/356 (32%), Gaps = 46/356 (12%) Query: 9 PFVTKERT-RHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSA--LTGSTPKREYIN--- 62 P + ++ R+GK+ + ++ R A + ++ ++ Sbjct: 13 PNLYRKLDKRNGKVYWQYKHPLTGRFHSLGTDAEEAEQVAAQANVVIAEQQTKQILSIND 72 Query: 63 -----SPRKKPTTLKWLISEYRKS----AHWGSLAVNSRISFESYFDQIIRKSGDFDYRK 113 +K ++ I +Y + G L +NS + + G + Sbjct: 73 RLSNIKNKKIGISVSNWIDKYLEIQQERMDQGELKLNSYKQKIKPLNLFKQHCGMMSLKD 132 Query: 114 ITTKHIRSGVESRKHTPSS--AIQFLTSMRVLFKWAVRQEYVAI--NPCLSVERPKRKTE 169 IT + + K + A + + +FK A +V NP L+ ++P+ K + Sbjct: 133 ITALEVVKITDEVKALGHNRMAQVVRSVIVDVFKEAQHVGHVPPGYNPALATKKPRSKVK 192 Query: 170 GIRPWTKEDMQQFKSFWSEGSQPRLA-FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK 228 R + ++ + + L +G R D + + + + I+ +K Sbjct: 193 RER-LSLDEWKAIYQQAAMHPHYLQHGMLLALITGQRLGDITKMKFSDVWDGMLHIEQEK 251 Query: 229 TGTIITVELP-------------DGFMKLLAMTP---IGKETFFINNDKQKMNATQFSIW 272 TGT I + L + L ++P + + ++ T + Sbjct: 252 TGTKIAIPLTLKCDAIEMTLGDVISMCRDLVVSPYLLHHRHSIARGKKGGAISNTSLTAA 311 Query: 273 FKAKATKAGVNKS------AHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 FK K G+ S H R S I + G G ++ + Y Sbjct: 312 FKNARNKCGITWSKGAEPTFHEQRSLSERIYREQGLDT---QRLLGHRSKVMTDNY 364 >gi|331269495|ref|YP_004395987.1| integrase/recombinase [Clostridium botulinum BKT015925] gi|329126045|gb|AEB75990.1| integrase/recombinase, putative [Clostridium botulinum BKT015925] Length = 274 Score = 93.6 bits (231), Expect = 4e-17, Method: Composition-based stats. Identities = 45/262 (17%), Positives = 87/262 (33%), Gaps = 25/262 (9%) Query: 88 AVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSG----VESRKHTPSSAIQFLTSMR 141 + + S+ Q K+ KI I + ++ + + L S+ Sbjct: 18 SEKTIDSYIRDISQFNDYLKTNKKKLVKIKLSDIDEFKNFLIYDKELKIKTINRKLVSIN 77 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGI--RPWTKEDMQQFKS--FWSEGSQPRLAFE 197 K+ N + +++ K + + + +D++ + + + R Sbjct: 78 QYLKF--------NNISVDIKQEKVQMQNFLDDMLSNQDIEDIIKATYAKDDVRARTIIY 129 Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL---LAMTPIGKET 254 L Y+G+R S+ + + + + SI K V +P+ + I K T Sbjct: 130 TLYYTGMRVSEMLQLTIYDTKKSSISII-GKGSKHREVFVPNKLKTIWDNYMQVRIKKST 188 Query: 255 FFINNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISADAGATAHELMATY 311 + +N K A AGV+KS AH R AD G + Sbjct: 189 ALFTGKRGPINRKTVDSIIKTYAETAGVDKSKAHAHNFRHLYCKNLADRGIDISTIADIA 248 Query: 312 GWKTVDQAETYTKGADRIRLGI 333 G + ++ YT+ L I Sbjct: 249 GHQNINTTRIYTRKTKEELLNI 270 >gi|269977407|ref|ZP_06184379.1| tyrosine recombinase XerC [Mobiluncus mulieris 28-1] gi|269934323|gb|EEZ90885.1| tyrosine recombinase XerC [Mobiluncus mulieris 28-1] Length = 225 Score = 93.6 bits (231), Expect = 4e-17, Method: Composition-based stats. Identities = 44/223 (19%), Positives = 71/223 (31%), Gaps = 14/223 (6%) Query: 118 HIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177 + + T SA +S R F WA R + +P + KR RP ++ Sbjct: 8 DFSACHDWMPETRHSA---FSSFRQFFAWAYRTGRLETDPAAGLPAIKRFVPPPRPISEL 64 Query: 178 DMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT---QKTGTIIT 234 D + E + RL GLR S+ C + +Q ++ K G Sbjct: 65 DFEAALDQADERT--RLILLLAGKMGLRRSEICLVHARDIQQDLLGYSLVVHGKGGKTRV 122 Query: 235 VELPDGFMKLLAMTPIGKETFF--INNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKF 292 V +PD + L F + + + + + K H +R Sbjct: 123 VPIPDSLVFPLRRAGEIGGWVFPSLTAREGHLTSGTVAKLAKRVLPT---GVCLHQLRHR 179 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGAD-RIRLGIK 334 ATI + G V + Y D R+RL + Sbjct: 180 FATIVYLRTKDLRAVQMLLGHDKVSTTQRYVAMDDQRLRLAVN 222 >gi|229825965|ref|ZP_04452034.1| hypothetical protein GCWU000182_01329 [Abiotrophia defectiva ATCC 49176] gi|229789707|gb|EEP25821.1| hypothetical protein GCWU000182_01329 [Abiotrophia defectiva ATCC 49176] Length = 366 Score = 93.6 bits (231), Expect = 4e-17, Method: Composition-based stats. Identities = 53/306 (17%), Positives = 98/306 (32%), Gaps = 45/306 (14%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHT 129 + Y K L + + D +I G+ +I I + ++ K Sbjct: 61 FASFVEIYLKDKE-VELKQRTLRNKRYMIDTHVIPYFGEKKMNEIMPADIIAWQKTIKEN 119 Query: 130 PSSAIQFLTSMR----VLFKWAVRQEYVAINPCLSVER-PKRKTEGIRPWTKEDMQQFKS 184 + +L ++ +F AV+ + +NPC SV++ + I WT ++ Q F Sbjct: 120 NEFSEAYLRMLQNQVTAIFIHAVKIYSLRVNPCKSVKKMGRSDDRSITFWTFDEYQHFIR 179 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKT--------------- 229 + S L FE L ++G+R + + + SI KT Sbjct: 180 TYDTTSMHYLMFEILFWTGMREGELLALTMNDIDFTQMSIHISKTYYRMNRQDIITEPKT 239 Query: 230 -GTIITVELPDGFMKLLAM-------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281 ++ TV +P M + P F + A K KA Sbjct: 240 DNSVRTVAVPKFLMDDIKCYYERLYKYPRDARLF-------PIVAEALQHSMKRHTAKAD 292 Query: 282 VN-KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIRLGIKNSRRI 339 V H +R G + G K + TY L +++ Sbjct: 293 VKPIRVHDLRHSHCAYLIHQGIQPLLIKERLGHKDIRITLNTYGH------LYPSEQKKV 346 Query: 340 SSVVDS 345 + ++++ Sbjct: 347 ADMLNN 352 >gi|254453490|ref|ZP_05066927.1| site-specific recombinase, phage integrase family protein [Octadecabacter antarcticus 238] gi|198267896|gb|EDY92166.1| site-specific recombinase, phage integrase family protein [Octadecabacter antarcticus 238] Length = 368 Score = 93.6 bits (231), Expect = 4e-17, Method: Composition-based stats. Identities = 44/321 (13%), Positives = 106/321 (33%), Gaps = 18/321 (5%) Query: 9 PFVTKERTRHGKIIYYFRK---GHGRRIRL-PYPHESTFIPAYMSALTGSTPKREYINSP 64 + + K +YF+K G +RI + +P S + R + Sbjct: 38 KGLVLFVGKRSKT-WYFQKDVGGQTKRILIGRFPIISAQAARQTALGFALEMGRGAGKAA 96 Query: 65 RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124 + L+ + Y + +++ + ++ +I+ Sbjct: 97 QIGAPILEAAMEVYLARPKLR--SETNKVGMRAQLTLHLKDWMRLPLDEISKAMSVRRHH 154 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 +PS+A L S R ++ A R + P +++E + K +G + ++ Sbjct: 155 DMAGSPSAANHVLRSFRAIYNHARRTGDLPECPTMAIEWFEDKPDGRIIENLKHWRKTID 214 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244 R+ +E LL++GLR ++ + + + + K G + + ++ Sbjct: 215 DLPNPIH-RVFYELLLFTGLRKTEVFTLKWEQVLEDRIHLPMTKNGRSFDLPISQLHHEI 273 Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATA 304 LA + I ++ + + + H R+ AT++ +AG Sbjct: 274 LAPLRPLSSDWVI-----PSPKSETGHITRPVR----LKYNPHMHRRTFATVAMEAGVLE 324 Query: 305 HELMATYGWKTVDQA-ETYTK 324 + + + Y + Sbjct: 325 EIVGRLLNHTPLSITGQRYVR 345 >gi|126661524|ref|ZP_01732572.1| Phage integrase [Cyanothece sp. CCY0110] gi|126617190|gb|EAZ88011.1| Phage integrase [Cyanothece sp. CCY0110] Length = 320 Score = 93.6 bits (231), Expect = 4e-17, Method: Composition-based stats. Identities = 48/289 (16%), Positives = 100/289 (34%), Gaps = 31/289 (10%) Query: 80 KSAHWGSLAVNSRISFESYFDQIIR--KSGD-----FDYRKITTKHIRSGVES--RKHTP 130 S + L+ SR + + I +GD D+ K+ H + + +K P Sbjct: 28 ASVYLSGLSEGSRRTIRYSLNTIASLLTNGDCDADTLDWSKLRYHHTAAVRVALLQKLAP 87 Query: 131 SSAIQFLTSMRVLFKWAVRQEYVA-INPCLSVERPKRKTEGI---RPWTKEDMQQFKSFW 186 +A + L+++R + A R +A + +V+ P + R +++ Sbjct: 88 VTANKMLSALRRVLLEAYRLGLMAADDYQKAVDFPNIQGSPELRGRSLDSTEIRALLGTC 147 Query: 187 SEGS----QPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDG 240 E S + L +G+R S+ + ++ + ++ K G V LP+ Sbjct: 148 GEDSVMDVRDAAIMVMLRGTGIRRSELVKLELRDFESSTGEVLVRKGKRGKSRRVYLPEE 207 Query: 241 F----MKLLAMTPIGKETFFINNDKQK------MNATQFSIWFKAKATKAGVNK-SAHGV 289 + L + F + M++ + +A AG+ S H Sbjct: 208 AISYIQRWLGVRGEESGCLFCRIHRGGHLKLGQMHSDTVWRIIQKRAKMAGIESFSPHDF 267 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQAETY-TKGADRIRLGIKNSR 337 R+ + DAG + G + Y +G + R ++ + Sbjct: 268 RRTFCSDLLDAGVDIVTVQKLAGHSSPVTTAKYDRRGEETKRRAVQCLK 316 >gi|110805783|ref|YP_689303.1| putative phage integrase protein [Shigella flexneri 5 str. 8401] gi|110615331|gb|ABF03998.1| putative phage integrase protein [Shigella flexneri 5 str. 8401] Length = 358 Score = 93.6 bits (231), Expect = 4e-17, Method: Composition-based stats. Identities = 43/276 (15%), Positives = 88/276 (31%), Gaps = 26/276 (9%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--K 127 T+ I Y+ + N+ + + + I K G +ITT+HI ++ Sbjct: 75 TMAGWIERYKTILIRRKASRNTYKTRVNQLETIKEKLGGVLLTEITTRHIAEFLDLWIEG 134 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK--RKTEGIRPWTKEDMQQFKSF 185 + A + + +F+ A+ + ++ NP PK E ++ T +++ Sbjct: 135 GKNTMAGSMRSVLSDMFREAIVEGRISQNPVTPTRAPKIVVTRERLKLKTYNCIREAADQ 194 Query: 186 WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLL 245 LA + L +G R D + ++ I+ KTG +I + L Sbjct: 195 LPAWFP--LAMDLALVTGQRREDITNMRFSDIYDDRLHIRQIKTGMMIAIPLSLSLPVAG 252 Query: 246 AMTP--------IGKETFFINNDKQKMN------ATQFSIWFKAKATKAGV-----NKSA 286 + + + I+ +K + + F A G+ + Sbjct: 253 LRLGAVVEQCRMVSRGDYLISAGIRKNSPDGSIHPDGLTKKFVAARKLTGILFSENPPTF 312 Query: 287 HGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 H +R A G + + Y Sbjct: 313 HEIR-SLAGRLYKEICGEEFAQRLLGHTSEKTTKMY 347 >gi|30019100|ref|NP_830731.1| DNA integration/recombination/invertion protein [Bacillus cereus ATCC 14579] gi|29894643|gb|AAP07932.1| DNA integration/recombination/invertion protein [Bacillus cereus ATCC 14579] Length = 282 Score = 93.6 bits (231), Expect = 4e-17, Method: Composition-based stats. Identities = 38/258 (14%), Positives = 81/258 (31%), Gaps = 35/258 (13%) Query: 101 QIIRKSGDFDYRKITTKHIRSGVESRKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINP 157 +II G+ K+T+ H+++ V S + + + + +R + A+ E + N Sbjct: 9 RIIPSLGNIKLAKLTSLHMQNYVNSLRDEGLKRGTIEKIIKLIRNSLENAIDLELITKNV 68 Query: 158 CLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHL 217 ++ K E + W ++++Q F + S+ + F L +G+R + + + Sbjct: 69 AAKIKLSKADKEELTVWNEQEVQLFLKAAQD-SRYYIVFHMALVTGMRQGELLGLRWKDV 127 Query: 218 QNNIFSIK--------------TQKTGTIITVELPDG-------------FMKLLAMTP- 249 + KT + + L + L+ Sbjct: 128 DLEKGHLTISQTLSHDGKTFLVGGKTKSSLRKILLPASTVAKLKKHGVVVLKEKLSQGEE 187 Query: 250 -IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHEL 307 + +N A A V K H + AT+ G + Sbjct: 188 YHDNDLVMCTPSGTSINPANVRRSLNALIQNAAVPKIRFHDLHHTHATLLMAKGVDVKVI 247 Query: 308 MATYGWKTVDQA-ETYTK 324 G + +TY+ Sbjct: 248 SERLGHSNIKITLDTYSH 265 >gi|163846861|ref|YP_001634905.1| integrase domain-containing protein [Chloroflexus aurantiacus J-10-fl] gi|222524682|ref|YP_002569153.1| integrase domain-containing protein SAM domain-containing protein [Chloroflexus sp. Y-400-fl] gi|163668150|gb|ABY34516.1| integrase domain protein SAM domain protein [Chloroflexus aurantiacus J-10-fl] gi|222448561|gb|ACM52827.1| integrase domain protein SAM domain protein [Chloroflexus sp. Y-400-fl] Length = 317 Score = 93.6 bits (231), Expect = 4e-17, Method: Composition-based stats. Identities = 48/288 (16%), Positives = 96/288 (33%), Gaps = 30/288 (10%) Query: 86 SLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFK 145 L+ N+ S+ + ITT I+ + R+ P + + + S+ F+ Sbjct: 31 GLSDNTITSYRCDLRTAGLAL-SQELSAITTADIQQFLARRQEQPGTTNRRIASLGRFFR 89 Query: 146 WAVRQEYVAINPCLSVE-RPKRKTEGIRPWTKEDMQQFKSFWSEGSQP-RLAFEFLLYSG 203 WA+ + YV NP ++ R + + +++ + QP RL F L G Sbjct: 90 WALERGYVTHNPVEQIDGRLPTEHRPQPITNEAELRALDQAIAAAPQPYRLIFTMLREIG 149 Query: 204 LRCSDSCRAGVQHL----QNNIFSIKTQKTGTIITVEL-PDGFMKLLAMT---------P 249 +R + V + + ++ K+G+ + L PD + L Sbjct: 150 IRTDEVLNLNVGDVILEPGREMLLVQDSKSGSKRMIVLTPDAMPRSLRGLRVWVRDMEDA 209 Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGV----------NKSAHGVRKFSATISAD 299 + F ++ +++ + A A + + H +R +A Sbjct: 210 APETPLFRSSRGTRVSYDTLHRRWVAVCKAARLIDIVDGREQPRYTLHHLRHTAAAEL-I 268 Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDD 347 A + G + Y++ R R R +S V S Sbjct: 269 AFYPEQVVRRILGHRDPRSTRRYSELV-RSR-AHTAERPVSLQVPSRR 314 >gi|121583523|ref|YP_973949.1| phage integrase family protein [Polaromonas naphthalenivorans CJ2] gi|120596773|gb|ABM40207.1| phage integrase family protein [Polaromonas naphthalenivorans CJ2] Length = 331 Score = 93.6 bits (231), Expect = 4e-17, Method: Composition-based stats. Identities = 46/280 (16%), Positives = 97/280 (34%), Gaps = 35/280 (12%) Query: 84 WGSL-AVNSRISFESYFDQIIRKSG---DFDYRKITTKHI---RSGVESRKHTPSSAIQF 136 + +L + +R +++ + +G ++R +T HI R+ +E + +S + Sbjct: 41 FANLDSAQTRRAYQGDLRAFMAFTGIVQPEEFRAVTRAHILAWRAELEKQNLAGASIRRK 100 Query: 137 LTSMRVLFKWAVRQEYVAINPCLSVERPKRKT--EGIRPWTKEDMQQFKSFWS----EGS 190 L ++ L+ + V NP V+RPK +T + +G Sbjct: 101 LAALASLYDYLCESNAVTHNPVRGVKRPKAETSEGKTPALGDAQARALLGAPPSDTLKGK 160 Query: 191 QPRLAFEFLLYSGLRCSDSCRAGVQHL---QNNIFSIK-TQKTGTIITVELPD----GFM 242 + R LLY LR + + V+ + + ++ K G + + Sbjct: 161 RDRAILSVLLYHALRREELTKLLVKDFAQERRGVPHLRVQGKGGKLRYLPAHPHSLRLVA 220 Query: 243 KLLAMTPIGKET--------------FFINNDKQKMNATQFSIWFKAKATKAGVNKSAHG 288 + LA + G+E + + + A+ AG N H Sbjct: 221 EYLAASGHGQEADSPLFRRTRAPRAGALASALTPGSVYADVVVRYMAQVGIAGENMGPHA 280 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 +R +AT + + A ++ G ++ Y + R Sbjct: 281 LRATAATNALEHQADIAKVQEWLGHASISTTRVYDRRGSR 320 >gi|320652975|gb|EFX21175.1| putative integrase [Escherichia coli O55:H7 str. 3256-97 TW 07815] Length = 309 Score = 93.6 bits (231), Expect = 4e-17, Method: Composition-based stats. Identities = 49/301 (16%), Positives = 98/301 (32%), Gaps = 12/301 (3%) Query: 28 GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRK-SAHWGS 86 G+RIR + +S + L NS ++P ++ LI + K Sbjct: 6 RKGKRIRKKFKTKSDAVLYERWVLAQQHNNEWKGNSIDRRPLSV--LIDLWWKYHGQLMK 63 Query: 87 LAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKW 146 N+R+ + + + T+ +R + PS+ + + ++ +F Sbjct: 64 SGHNTRLKLLRLSEAMDDPCVHKLNTTMLTE-LRVSRIEQGIQPSTINREIGALSAMFTA 122 Query: 147 AVRQEY-VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLR 205 + + + NP ++ K + +K + Q +E RLA E LL +G R Sbjct: 123 LISSGHFLNDNPVQGLKGMKVNEREMGYLSKSECVQLLDALAENPDERLAVEILLSTGAR 182 Query: 206 CSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMN 265 + + + + + K TV + + + + G + F D + Sbjct: 183 WGEVAVLEQRRVLHCRITFSKTKNSKNRTVPISESLFE--KIKKRGGKLVFPTLD-YPLV 239 Query: 266 ATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 K A ++ H +R A+ G L G + Y Sbjct: 240 RD----VIKTVAPDVPDGQAVHALRHTFASHFMMNGGNILTLQKILGHAKIQTTMIYAHL 295 Query: 326 A 326 A Sbjct: 296 A 296 >gi|268610896|ref|ZP_06144623.1| integrase family protein [Ruminococcus flavefaciens FD-1] Length = 399 Score = 93.6 bits (231), Expect = 4e-17, Method: Composition-based stats. Identities = 53/321 (16%), Positives = 107/321 (33%), Gaps = 56/321 (17%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQI-IRKSGDFDYRKITTKHIRSGVESRKHT 129 + ++ + ++ ++R+++ Y I K D + +T ++ + K+ Sbjct: 70 FGEYLDQWLEKFGSVAIRNSTRMNYLGYLRHIQRHKIKDIKLKNLTVDDLQEFILFLKNA 129 Query: 130 -------PSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179 P SA + + AV ++ + N V+ PK T +R T+ ++ Sbjct: 130 GQLDTGLPLSAKTLHNIMNMIHKALDHAVGRQLIYHNAADYVQLPKVMTPEMRVLTETEI 189 Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQK--------- 228 F + EG + ++A +L+ GLR + C ++ + I+ + K Sbjct: 190 SGFVAAM-EGDRLQIALVLMLFCGLRLGECCALTHDDVRCKDGIYYLNISKSLNRVSNFE 248 Query: 229 ------------------TGTIITVELPDGFMKLLAMTPIGKET-------------FFI 257 G LP+ K+LA KE Sbjct: 249 AKAGEPKTILRLQETKTSKGKRQVPLLPEVADKVLAHIQWQKEQAEKSYGMYEENPWLIA 308 Query: 258 NNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTV 316 N ++ KA A G+ + H +R A+ + AG L G ++ Sbjct: 309 NELGHYLDPGTVRKKLKAVAESIGITDFHPHCLRHTYASQAVKAGVPLPYLSDILGHEST 368 Query: 317 D-QAETYTKGADRIRLGIKNS 336 A+ Y + R + + Sbjct: 369 AFTAKVYVSLDLQGRANAQAA 389 >gi|54026110|ref|YP_120352.1| site-specific tyrosine recombinase XerC [Nocardia farcinica IFM 10152] gi|54017618|dbj|BAD58988.1| putative recombinase [Nocardia farcinica IFM 10152] Length = 307 Score = 93.6 bits (231), Expect = 4e-17, Method: Composition-based stats. Identities = 37/286 (12%), Positives = 86/286 (30%), Gaps = 29/286 (10%) Query: 68 PTTLKWLISEYRKSAHW-GSLAVNSRISF----ESYFDQIIRKSGDFDYRKITTKHIRSG 122 P L L++EY + + + ++ ++ + + +S D ++ +RS Sbjct: 5 PEDLTALLAEYGRHLRLGQNRSAHTVRAYVGDARALLTHLYTRSPDAAIGELDLPLLRSW 64 Query: 123 VESRKHT---PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPW----- 174 + ++ + +++R W + +P L + PK Sbjct: 65 LADLAAAGAARTTLARRASAVRTFTAWLTGTGRLPADPGLRLAAPKAHRTLPAVLARQQA 124 Query: 175 ---TKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231 + + RL E L +G+R S+ C + + ++ G Sbjct: 125 VAAMDAAESGARQEDPMALRDRLIVEMLYATGIRVSELCGLDIDDVDRERRLVRVLGKGN 184 Query: 232 ---------IITVELPDGFMKLLAMTPI--GKETFFINNDKQKMNATQFSIWFKAK--AT 278 + + + I ++++ Q A Sbjct: 185 KERSVPFGGPADLAVEQWLRRGRPAFATVESGRALLIGRRGRRLDQRQARTVVHEVVSAI 244 Query: 279 KAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 + HG+R +AT + GA + G ++ + YT Sbjct: 245 PGAPDLGPHGLRHSAATHLLEGGADLRVVQELLGHSSLATTQLYTH 290 >gi|254881857|ref|ZP_05254567.1| integrase [Bacteroides sp. 4_3_47FAA] gi|254834650|gb|EET14959.1| integrase [Bacteroides sp. 4_3_47FAA] Length = 372 Score = 93.6 bits (231), Expect = 4e-17, Method: Composition-based stats. Identities = 52/265 (19%), Positives = 96/265 (36%), Gaps = 26/265 (9%) Query: 84 WGSLAVNSRISFESYFDQIIR-KSGDFDYRKITTKHIRSGVE-----------SRKHTPS 131 + LA I ++ + R +G + ++ R +E ++K + Sbjct: 100 FKELADRKNIKWQHVYKHFERFVNGKCTFEEVDVDLCRKFMEYLLNAPQSIHTNQKLHIN 159 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191 SA + ++ R + A R + + NP ++R + ++E++ + E Sbjct: 160 SAAGYWSAFRAVLHTAYRDKKIKENPNGFLDRIECIPTMREHLSQEELIRLAETPCEEDV 219 Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQ---NNIFSIKT--QKTGTIITVELPDGFMKLLA 246 + AF F +GLR SD + Q +Q N + T QKT I+ + D LL Sbjct: 220 LKRAFLFACLTGLRKSDIRQLTWQQIQPYTNGKMFVTTRMQKTKQIVHNPISDEAYGLLG 279 Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATA 304 G F + K AG+ K + H R ++ + G Sbjct: 280 ERHEG--LIF-----EGFKDKMLQGPLKRWLLAAGITKKITFHCTRHSFGSLHVEMGTDM 332 Query: 305 HELMATYGWKTVDQAETYTKGADRI 329 + A G K + + Y+K A + Sbjct: 333 AVIQAYMGHKNITTTQIYSKMAAQQ 357 >gi|84516978|ref|ZP_01004335.1| possible phage-related integrase [Loktanella vestfoldensis SKA53] gi|84509096|gb|EAQ05556.1| possible phage-related integrase [Loktanella vestfoldensis SKA53] Length = 386 Score = 93.6 bits (231), Expect = 4e-17, Method: Composition-based stats. Identities = 52/340 (15%), Positives = 114/340 (33%), Gaps = 23/340 (6%) Query: 27 KGHGRRIRLPYPHEST--FIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHW 84 + +GRR R+ A +A + +E + P T + + E+ A Sbjct: 51 RENGRRKRITLGGYPAISLSKAREAARLALSEIQEGTFGRKNAPATFETAVEEWY--ARE 108 Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP--SSAIQFLTSMRV 142 + R ++ ++ G +I + ++ + A + + Sbjct: 109 QRAKKSFRQVEQAMRLHVLPFLGRHQLDQIKKADLMRVIDRVAERGKLTQANRVRAFITR 168 Query: 143 LFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQF-KSFWSEGSQPRLAFEFLLY 201 F +A+ ++ + +P ++ RP + R +++++ ++ G + L+ Sbjct: 169 FFNFAIERDLLMSSPAAALPRPAVEISRDRVLSRDELCAVWETAEQMGFPFGRITQLLIL 228 Query: 202 SGLRCSDSCRAGVQHLQNN----IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFI 257 + R + L + I S + K G V L + LL+ P I Sbjct: 229 TAQRRDEVAGMRWSELDLDRARWIISKERAKNGKAHIVHLSPQALALLSTIPRQNGVDLI 288 Query: 258 NNDKQKMNATQFSIWFKAKATKA---GVNKSAHGVRKFSATISADA-GATAHELMATYGW 313 + + FS A A + H +R+ +AT A+ T + Sbjct: 289 FTTTGRSAVSGFSKA--KAALDARSHVSDWRFHDLRRSAATFMAEELRITPVVVDRILNH 346 Query: 314 KTVD---QAETYTKG---ADRIRLGIKNSRRISSVVDSDD 347 + Y +G ADR + + ++V+S+ Sbjct: 347 VSGTVRGVTAVYLRGEHLADREAALAAWGQLVENLVNSNK 386 >gi|301059574|ref|ZP_07200486.1| site-specific recombinase, phage integrase family [delta proteobacterium NaphS2] gi|300446339|gb|EFK10192.1| site-specific recombinase, phage integrase family [delta proteobacterium NaphS2] Length = 441 Score = 93.6 bits (231), Expect = 4e-17, Method: Composition-based stats. Identities = 52/313 (16%), Positives = 98/313 (31%), Gaps = 41/313 (13%) Query: 49 SALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWG-SLAVNSRISFESYF----DQII 103 A+ K+E K ++ EY K ++ + + S+E + + Sbjct: 100 RAIAEILKKKEEQAKAAKANESIS--FGEYFKETYYPIAQTSKKKRSYEQELSHFNNWLN 157 Query: 104 RKSGDFDYRKITTKHIRSG--------------------VESRKHTPSSAIQFLTSMRVL 143 G+ + I H+ V+ + +P + R Sbjct: 158 PVIGNMRLKDIRPMHLERVKQNLLSAQAMSRNREPKKGPVKKQARSPRMIQYVFATGRQC 217 Query: 144 FKWAVRQEYVAIN-PCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQP-RLAFEFLLY 201 + +A R V+ P V+ PK + + +R T E+ Q + E SQ L Sbjct: 218 WNYARRDGLVSNEWPGKDVKLPKVENQRMRFLTDEEGDQLLAGLKERSQQLHDICLLSLD 277 Query: 202 SGLRCSDSCRAGVQHLQNNIFSIKT-QKTGTIITVELPDGFMKLLAMTPIGKETFFINND 260 SGLR + + + +K G V L D + +L P F + Sbjct: 278 SGLRAYEIFSLSWNRVDLDQKLVKVFDSKGKDRVVYLTDRTVNMLRGLPRDNGLVFKSRT 337 Query: 261 KQKMNATQFSIWFKAKATKAGVN---------KSAHGVRKFSATISADAGATAHELMATY 311 +++ + S F + G N H +R A+ G + + Sbjct: 338 GEQI--KEISNSFHREVDSLGWNDGVKSHKDRLVFHSLRHSYASRLVARGVDLYVVGQLM 395 Query: 312 GWKTVDQAETYTK 324 G + + Y+ Sbjct: 396 GHSDLTMTKRYSH 408 >gi|282877198|ref|ZP_06286036.1| site-specific recombinase, phage integrase family [Prevotella buccalis ATCC 35310] gi|281300690|gb|EFA93021.1| site-specific recombinase, phage integrase family [Prevotella buccalis ATCC 35310] Length = 410 Score = 93.6 bits (231), Expect = 4e-17, Method: Composition-based stats. Identities = 40/268 (14%), Positives = 94/268 (35%), Gaps = 30/268 (11%) Query: 85 GSLAVNSRISFE---SYFDQIIR---KSGDFDYRKITTKHIRSGVESRKH----TPSSAI 134 A+ + +E Y ++I+ D +I + +R+ K ++ I Sbjct: 130 KDYALITVRRYESCKRYLAELIKLKYDKEDLPLSEINGELVRAFEFYLKTEKECQQNTVI 189 Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF---WSEGSQ 191 +++ ++ + A+ E++ +P + ++ +++ T +++ + + Sbjct: 190 RYMKCLKKITNLALANEWITKDPFIGIKFHEKEVI-REFLTMDELLTIYNKEFSLDRITV 248 Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHL-----QNNIFSIKTQKTGTIITVELPDG----FM 242 R F F ++GL D + +H+ N QKT + + L D Sbjct: 249 VRDVFTFAAFTGLAFIDVQQLSAEHIVQDNNGNYWIRKPRQKTKNMCNIPLLDIPMQILE 308 Query: 243 KLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS-AD 299 K + K+ + + + + K A G++K + H R AT Sbjct: 309 KYKSHPTCQKKNVLL----PVPCNQKMNSYLKEIADLCGISKCLTTHTARHSYATSVCLA 364 Query: 300 AGATAHELMATYGWKTVDQAETYTKGAD 327 G + + G + + Y + D Sbjct: 365 NGVSIENVAKMLGHSNIKMTQHYARVLD 392 >gi|153814903|ref|ZP_01967571.1| hypothetical protein RUMTOR_01118 [Ruminococcus torques ATCC 27756] gi|317500415|ref|ZP_07958639.1| phage integrase family Integrase/recombinase [Lachnospiraceae bacterium 8_1_57FAA] gi|331089578|ref|ZP_08338477.1| hypothetical protein HMPREF1025_02060 [Lachnospiraceae bacterium 3_1_46FAA] gi|145847934|gb|EDK24852.1| hypothetical protein RUMTOR_01118 [Ruminococcus torques ATCC 27756] gi|316898170|gb|EFV20217.1| phage integrase family Integrase/recombinase [Lachnospiraceae bacterium 8_1_57FAA] gi|330404946|gb|EGG84484.1| hypothetical protein HMPREF1025_02060 [Lachnospiraceae bacterium 3_1_46FAA] Length = 366 Score = 93.6 bits (231), Expect = 4e-17, Method: Composition-based stats. Identities = 44/281 (15%), Positives = 92/281 (32%), Gaps = 44/281 (15%) Query: 100 DQIIRKSGDFDYRKITTKHIRSGVESRK----------HTPSSAIQFLTSMRVLFKWAVR 149 + I + D + I E K +T + ++++R + + + Sbjct: 83 NYTIDQFTLADIENLEPVDIEEYQEYLKVYKNDEKQVTNTEKGLARKMSALRSFYGYYFK 142 Query: 150 QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG--------------SQPR-- 193 ++ ++ NP L V+ PK + I +++ + + G ++ R Sbjct: 143 RQAISKNPTLLVDMPKLHEKAIIRLDADEVVRLLDYVDHGGDHLTGQKKAYFEKTRNRDL 202 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLA----- 246 LL +G+R S+ + + NN + +K G + V + L Sbjct: 203 AILTLLLGTGIRVSECVGLDINDVDFENNGIKVM-RKGGNEMIVYFGEEVENALKTYMYT 261 Query: 247 ------MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISA 298 P + F++ +++M K A + NK + H +R T Sbjct: 262 TRRTTLPLPGHENALFLSTQRKRMGVQAIENMVKKYAREVTPNKKITPHKLRSTYGTSLY 321 Query: 299 DAGATAHELMATYGWKTVDQA-ETYTK-GADRIRLGIKNSR 337 + + G K V+ + Y DR R + Sbjct: 322 KETGDIYLVADVLGHKDVNTTKKHYAAIDEDRRRQAANIVK 362 >gi|325662711|ref|ZP_08151308.1| hypothetical protein HMPREF0490_02048 [Lachnospiraceae bacterium 4_1_37FAA] gi|325471050|gb|EGC74277.1| hypothetical protein HMPREF0490_02048 [Lachnospiraceae bacterium 4_1_37FAA] Length = 351 Score = 93.6 bits (231), Expect = 4e-17, Method: Composition-based stats. Identities = 53/340 (15%), Positives = 112/340 (32%), Gaps = 54/340 (15%) Query: 16 TRHGKII----YY-----FRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66 TR GK+ YY R+ +R + ++ + Sbjct: 4 TRDGKLWRSQFYYKDWQGIRRKKNKRGFKTKGEADEWERNFLQ------------QQQKN 51 Query: 67 KPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVE- 124 + + + Y L ++ I+ FD ++ +I T IR+ Sbjct: 52 LDISFENFVEIYFADME-NRLRESTIINKRYVFDLKVTPYFKHKKMCEIQTSDIRAWQNE 110 Query: 125 --SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP-KRKTEGIRPWTKEDMQQ 181 + + P+ + LF +AVR + NPC K K + + WTK++ ++ Sbjct: 111 LIKKGYAPTYLKSINNQLAALFNYAVRYYDLRDNPCRKAGSIGKSKADEMDFWTKQEFKE 170 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ---------------NNIFSIKT 226 F + R+AF L ++G+R + + + N I Sbjct: 171 FLPSMDSKPEARMAFLLLYWTGMRIGELLALTYEDIDLEKRCITINKSYQRLNGKDMITP 230 Query: 227 QKT-GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS 285 KT + + +P ++ L + I +++ +F+ F G+ ++ Sbjct: 231 PKTPKSNRKISIPPFLVEELKE--YCSMLYGITENERMF---RFTKSFMEHEMVRGIKET 285 Query: 286 ------AHGVRKFSATISADAGATAHELMATYGWKTVDQA 319 H +R A++ + G + G + ++ Sbjct: 286 GVRRIRLHDLRHSHASLLVEMGFQPLAIAERLGHEKIETT 325 >gi|319760989|ref|YP_004124926.1| integrase family protein [Alicycliphilus denitrificans BC] gi|317115550|gb|ADU98038.1| integrase family protein [Alicycliphilus denitrificans BC] Length = 454 Score = 93.6 bits (231), Expect = 4e-17, Method: Composition-based stats. Identities = 67/345 (19%), Positives = 123/345 (35%), Gaps = 28/345 (8%) Query: 9 PFVTKERTRHGKII----YYFRKGHGRRIRLPYPHESTFIPAYMSA--LTGSTPKREYIN 62 P + T HG+ + Y G R+ ++ E T A A K + + Sbjct: 29 PGFLCKVTAHGRKVFMLQYRTNWGERRKPKIGQFGELTVEQARSIAQDWLADVRKGDDPS 88 Query: 63 SPRKKPT---TLKWLISEYRKSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKH 118 + + T+K L ++ + + S++ Y D+ I+ G +T H Sbjct: 89 AAKLAARMAPTVKELCEQFIEEYSRPRNKPRTVDSYQGYIDRHILPALGKLKVPDVTRAH 148 Query: 119 IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAI--NPCLSVERPKRKTEGIRPWTK 176 I + ++ + +A + L +R +F A Y NPC V + + E R Sbjct: 149 ITTLMKDKARIGVTANRVLACLRKMFNMAEVWGYRPDGSNPCRHVPKYREDGE-TRYINN 207 Query: 177 EDMQQFKSFWS-------EGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQ 227 E++ + ++ E LA R ++ + N Sbjct: 208 EELARLYAYLDRADAQGLEHPTVTLAVRLQFEFSARMTEIRTLEWAWVDFENRRVVWPDS 267 Query: 228 KTGTIITVELPDGFMKLLAMTPIGKETFF----INNDKQKMNATQFSIWFKAKATKAGVN 283 KTG + + + +LL P ++ + I + K+ + + + +K +A V Sbjct: 268 KTGDMSK-PMSEAAYQLLRNAPRIDDSPYVCPAIFDAKKPLPDSTYYNGWKRILGRAEVA 326 Query: 284 K-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 HG+R +AT A++G MA KTV Q Y D Sbjct: 327 HVGTHGIRHRAATDIANSGIPIKVGMALTAHKTVTQFMAYVHAED 371 >gi|254504224|ref|ZP_05116375.1| site-specific recombinase, phage integrase family protein [Labrenzia alexandrii DFL-11] gi|222440295|gb|EEE46974.1| site-specific recombinase, phage integrase family protein [Labrenzia alexandrii DFL-11] Length = 317 Score = 93.6 bits (231), Expect = 4e-17, Method: Composition-based stats. Identities = 39/269 (14%), Positives = 81/269 (30%), Gaps = 29/269 (10%) Query: 85 GSLAVNSRISFESYFDQIIRKS--------GDFDYRKITTKHIRSGVESRKHTP---SSA 133 L+ + I++E Q +R G D + R + R+ S Sbjct: 32 RRLSDKTLIAYERDLRQFLRFLTDHLGGAPGIKDIADLRPADFRGFLAQRRRNKVQSRSL 91 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM-------QQFKSFW 186 + L +R K+ R+ + +V P++ +P + +D ++ Sbjct: 92 ARGLAGIRSFLKFLERRGEINAAASDAVRPPRQLRSLPKPVSAKDAIDITSGDLAMETEA 151 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRA-GVQHLQNNIFSIKTQKTG-TIITVELPDGFMKL 244 ++ L GLR S++ G Q +++ G V + + Sbjct: 152 WVEARNAAVLTLLYGCGLRISEALSLTGKMAPQPGTKTMRIIGKGRKERIVPILPAVCEA 211 Query: 245 LAM-------TPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN--KSAHGVRKFSAT 295 +A F+ +N + G+ + H +R AT Sbjct: 212 VAHYVKLCPYAISPDGPLFLGARGGPLNPRMIQLSMAKLRGALGLPETATPHALRHSFAT 271 Query: 296 ISADAGATAHELMATYGWKTVDQAETYTK 324 G + G ++ + YT+ Sbjct: 272 HLLAGGGDLRTIQELLGHASLASTQIYTE 300 >gi|313885490|ref|ZP_07819240.1| site-specific recombinase, phage integrase family [Eremococcus coleocola ACS-139-V-Col8] gi|312619220|gb|EFR30659.1| site-specific recombinase, phage integrase family [Eremococcus coleocola ACS-139-V-Col8] Length = 385 Score = 93.6 bits (231), Expect = 4e-17, Method: Composition-based stats. Identities = 51/328 (15%), Positives = 114/328 (34%), Gaps = 51/328 (15%) Query: 49 SALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNS-RISFESYFDQIIRKSG 107 + L + +I SP++ T + + + + ++ ++ ++ + I+ K G Sbjct: 48 AQLLAEIKENGFIESPKQ--MTFEQVFNLWIPIYE-TTVKESTFQMQKDVIRLHILPKFG 104 Query: 108 DFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQ-EYVAINPCLSVERPKR 166 KITT++ ++ V S + + + ++AV + NP V RPK+ Sbjct: 105 QARVDKITTQYCQTIVNEWFGYYSKYSNLIGLTQRILEFAVNNLNLIKDNPMKKVIRPKK 164 Query: 167 KTEGIR------PWTKEDMQQFKSFWSE--GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ 218 K E ++ + + F E Q + F + Y+G+R + C Sbjct: 165 KNELREDKYKAPTYSAKQLNDFLEKVKELDPGQMYVVFRIIAYTGMREGEVCGLKWTDFD 224 Query: 219 NNIFSIKTQKTGTI-----------------ITVELPDGFMKLLAMTP------------ 249 ++ ++T T+ L +++L Sbjct: 225 EVNGTLAVRRTVARGKDYKKILQNTKSVAGQRTIPLDQETIEVLKNWKKTQRIEMFKLGF 284 Query: 250 --IGKETFFINNDKQKMNATQFS----IWFKAKATKAGVNKSAHGVRKFSATISADAGAT 303 K+ F I N+ + +Q+ + K + + HG+R T+ ++GA+ Sbjct: 285 NTNHKDQFIITNEFNEFQYSQYPYALLKKIRKKCEIDPI--TVHGLRHTHCTLLIESGAS 342 Query: 304 AHELMATYGWKTVDQA-ETYTKGADRIR 330 E+ G + + Y + + Sbjct: 343 LKEVQDRMGHEDESMVLKVYLHINEEKK 370 >gi|255012270|ref|ZP_05284396.1| putative bacteriophage integrase [Bacteroides sp. 2_1_7] Length = 411 Score = 93.6 bits (231), Expect = 4e-17, Method: Composition-based stats. Identities = 42/269 (15%), Positives = 96/269 (35%), Gaps = 28/269 (10%) Query: 93 ISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH----TPSSAIQFLTSMRVLFKWAV 148 + + +I D + I + IR+ K + ++ I+++ ++ + ++ Sbjct: 144 KRYLAELIKIKYDKEDLPLKDINGEFIRAFDFYLKTEKECSQNTVIRYMKCLKKITNLSL 203 Query: 149 RQEYVAINPCLSVERP-KRKTEGIRPWTKEDMQQFKSF---WSEGSQPRLAFEFLLYSGL 204 E++ +P ++ K W +++Q + R F F Y+GL Sbjct: 204 ANEWINKDPFTGIKFHEKEVNREFLTW--DELQIITNKKFDLPRIDLVRDIFIFGCYTGL 261 Query: 205 RCSDSCRAGVQHL---QNNIFSIK--TQKTGTIITVELPDG----FMKLLAMTPIGKETF 255 D + +H+ + F I+ QKT + + L D K K+ Sbjct: 262 SFIDIKQLTAEHIVKDREGNFWIRKARQKTKNMCNIPLLDIPLAIIEKYKDNPKCQKQNV 321 Query: 256 FINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATIS-ADAGATAHELMATYG 312 + + + + K + G++K S H R AT G + + G Sbjct: 322 LL----PVPCNQKMNSYLKEISDLCGIHKEISTHTARHSYATSVCLANGVSIENVAKMLG 377 Query: 313 WKTVDQAETYTKGADRIRLGIKNSRRISS 341 ++ + Y + D+ L + +++ + Sbjct: 378 HSNINMTKRYARVLDQSIL--NDMQKVGN 404 >gi|156978022|ref|YP_001448928.1| integrase [Vibrio harveyi ATCC BAA-1116] gi|156529616|gb|ABU74701.1| hypothetical protein VIBHAR_06819 [Vibrio harveyi ATCC BAA-1116] Length = 341 Score = 93.6 bits (231), Expect = 4e-17, Method: Composition-based stats. Identities = 55/315 (17%), Positives = 107/315 (33%), Gaps = 46/315 (14%) Query: 51 LTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFD 110 +T K T+ I ++ S + ++ ++ IS + +++ R G Sbjct: 3 ITTRAAKAAKEIDMSNSQITVTQYIKKFLHSRKF-AVKPSTFISEKCKANKLTRYFGSTP 61 Query: 111 YRKITTKHIRSGVESR--KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168 + I ++ +++ S +FLT +R +F A R V NP ++ K Sbjct: 62 IDAVRHSDIIEMLDELHERYSNKSINEFLTILRAVFLRAERDGVVDRNPMNGIKNLKAIK 121 Query: 169 EGIRPWTKEDMQQFKSFWSEGSQP-RLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIK 225 P+TK+++ Q + G + + A E +Y+GLR S+ + + N + ++ Sbjct: 122 PIPNPFTKKELSQL--HQTLGCEQGKNAVELDVYTGLRISELLALSWEDIDWENRVLLVR 179 Query: 226 TQK----------TGTIITVELPDGFMKLLAMT------------------------PIG 251 K + VEL + ++ L Sbjct: 180 RAKVLQSYKTTKTKESTRKVELNELAIQALKRQWALTGQLEAVKISVLQDDNKSYIEERV 239 Query: 252 KETFFINNDKQKMNATQFSI--WFKAKATKAGVNKSAHG-VRKFSATISADAGATAHELM 308 F+ + Q +F+A KAGV G +R A+ + AG + Sbjct: 240 HIVFYNSQTNQPFLHAAQFNNTFFRAFLEKAGVAHRGVGQLRHTFASQNLTAGIAKDWIA 299 Query: 309 ATYGWKTVDQA-ETY 322 G + Y Sbjct: 300 MQMGHADTSMIDDHY 314 >gi|29350147|ref|NP_813650.1| transposase [Bacteroides thetaiotaomicron VPI-5482] gi|29342059|gb|AAO79844.1| transposase [Bacteroides thetaiotaomicron VPI-5482] Length = 407 Score = 93.6 bits (231), Expect = 4e-17, Method: Composition-based stats. Identities = 43/267 (16%), Positives = 90/267 (33%), Gaps = 27/267 (10%) Query: 85 GSLAVNSRISFESYFDQIIR------KSGDFDYRKITTKHIRSGVESRKHTP----SSAI 134 +A + +E+ D +++ + I K ++A Sbjct: 128 TDMAPATVQRYETSLKHTRDFVWETYHKKDVLLDEVSRQFIEDYEFWLKTEKKCCHNTAT 187 Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQ 191 ++L + + + + A+ + ++ +P L + R ++Q+ S SQ Sbjct: 188 KYLKNFKKIIRIALAKGWMKNDPFLEI-RFSLDKVEPDFLEDSEIQKLISKEIDIPRLSQ 246 Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNN-----IFSIKTQKTGTIITVELPDGFMKLLA 246 R F F ++GL SD +H+ + QKT + + L + +K+L Sbjct: 247 VRDIFVFCCFTGLAFSDIHGLRKEHIVEDSNGVRWIRKGRQKTKIMCNIPLMEIPLKILE 306 Query: 247 MTPIGKETFFINNDK---QKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADAG 301 + + + + + + K A G+ K+ H R AT + G Sbjct: 307 KYSTNE---YCKKHGVLFPVLCNQKMNAYLKELADICGIKKTLTTHVGRHTFATFALANG 363 Query: 302 ATAHELMATYGWKTVDQAETYTKGADR 328 + + G V Y + DR Sbjct: 364 VSIESVAKMLGHTNVQMTRHYARVLDR 390 >gi|121602434|ref|YP_988421.1| site-specific tyrosine recombinase XerC [Bartonella bacilliformis KC583] gi|120614611|gb|ABM45212.1| tyrosine recombinase xerC [Bartonella bacilliformis KC583] Length = 322 Score = 93.6 bits (231), Expect = 4e-17, Method: Composition-based stats. Identities = 41/268 (15%), Positives = 75/268 (27%), Gaps = 26/268 (9%) Query: 89 VNSRISFESYFDQIIRKSGDFD----YRKITTKHIRSGVESRKHTP---SSAIQFLTSMR 141 + + + G + +RS + R+ S + + SMR Sbjct: 45 EAYERDTRQFLFFLCQHLGRKPTYHDLADLQVADLRSYMAYRRKQMVSTRSLSRNMASMR 104 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM-------QQFKSFWSEGSQPRL 194 F + R+ V + V PK + T + Q + ++ Sbjct: 105 SFFNYLSRENLVDVPAAKLVRTPKYAKSLPKTLTMKAALTIVKQGNQQEDEPWIAARNAA 164 Query: 195 AFEFLLYSGLRCSDSCRAGVQHLQNNIFSI--KTQKTGTIITVELP----DGFMKLLAMT 248 L G+R S++ + + + K G V L + L Sbjct: 165 VLTLLYGCGMRISEALALTPKQFSDPNVTSLSIVGKGGKTRLVPLIKTVYESVETYLKCC 224 Query: 249 P---IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADAGAT 303 P + F + + G+ K+A H +R AT G Sbjct: 225 PYPLGDNQPMFRGARGGPLQPAIIQRAVQNLRASLGLPKTATPHALRHSFATHLLSRGGN 284 Query: 304 AHELMATYGWKTVDQAETYTKGADRIRL 331 + G ++ + YT D RL Sbjct: 285 LRIIQELLGHASLSTTQVYT-EIDSDRL 311 >gi|310826662|ref|YP_003959019.1| integrase [Eubacterium limosum KIST612] gi|308738396|gb|ADO36056.1| integrase [Eubacterium limosum KIST612] Length = 412 Score = 93.6 bits (231), Expect = 4e-17, Method: Composition-based stats. Identities = 46/304 (15%), Positives = 111/304 (36%), Gaps = 43/304 (14%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESY-FDQIIRKSGDFDYRKITTKHIRSGV------ 123 L+ ++++ +++ + +S + S ++ +I GD+ +++T+ I++ V Sbjct: 97 LREWLTDWLENSKKTEIKKSSYTQYSSVVYNHLIPTIGDYRLQEVTSDVIQNYVKAKLSH 156 Query: 124 ESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFK 183 + + ++ + ++ + K AV+ + +NPC+ V P K + ++KE+ Q+ + Sbjct: 157 HQKALSSTTVRRHISILSSALKQAVKLGIITVNPCIDVCIPAAKKRKMDVFSKEEYQKLE 216 Query: 184 S--FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKT------------Q 227 + + A L +G+R + + ++ Sbjct: 217 KTLYCDQDKVKATAVLLALKTGVRLGELAALRWCDIDFEEKTMMVRDAVHRVNTSEEAGG 276 Query: 228 KTGTIIT-----------VELPDG----FMKLLAMTPIGKETFFINNDKQKMNATQFSIW 272 K T+I + + A+ + E F++ ++ + + Sbjct: 277 KKTTMIFEGTKSYYSERNIPMNHEIYTLLKGYEAILSVKGEFVFLSKKGSFIDPRVYQTY 336 Query: 273 FKAKATKAGVNKS-AHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK---GAD 327 F AG+ K H +R AT +A L G + ++Y D Sbjct: 337 FADVLKNAGIKKRNFHILRHTFATRAASKNMQLAVLSRLLGHSNITVTLKSYIHPLTEQD 396 Query: 328 RIRL 331 RI + Sbjct: 397 RIEM 400 >gi|260855535|ref|YP_003229426.1| putative integrase [Escherichia coli O26:H11 str. 11368] gi|312966869|ref|ZP_07781087.1| integrase [Escherichia coli 2362-75] gi|257754184|dbj|BAI25686.1| putative integrase [Escherichia coli O26:H11 str. 11368] gi|312288333|gb|EFR16235.1| integrase [Escherichia coli 2362-75] Length = 311 Score = 93.6 bits (231), Expect = 4e-17, Method: Composition-based stats. Identities = 49/301 (16%), Positives = 98/301 (32%), Gaps = 12/301 (3%) Query: 28 GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRK-SAHWGS 86 G+RIR + +S + L NS ++P ++ LI + K Sbjct: 6 RKGKRIRKKFKTKSDAVLYERWVLAQQHNNEWKGNSIDRRPLSV--LIDLWWKYHGQLMK 63 Query: 87 LAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKW 146 N+R+ + + + T+ +R + PS+ + + ++ +F Sbjct: 64 SGHNTRLKLLRLSEAMDDPCVHKLNTTMLTE-LRVSRIEQGIQPSTINREIGALSAMFTA 122 Query: 147 AVRQEY-VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLR 205 + + + NP ++ K + +K + Q +E RLA E LL +G R Sbjct: 123 LISSGHFLNDNPVQGLKGMKVNEREMGYLSKSECVQLLDALAENPDERLAVEILLSTGAR 182 Query: 206 CSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMN 265 + + + + + K TV + + + + G + F D + Sbjct: 183 WGEVAALEQRRVLHCRITFSKTKNSKNRTVPISESLFE--KIKKRGGKLVFPTLD-YPLV 239 Query: 266 ATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 K A ++ H +R A+ G L G + Y Sbjct: 240 RD----VIKTVAPDVPDGQAVHALRHTFASHFMMNGGNILTLQKILGHAKIQTTMIYAHL 295 Query: 326 A 326 A Sbjct: 296 A 296 >gi|238920129|ref|YP_002933644.1| integrase family protein [Edwardsiella ictaluri 93-146] gi|238869698|gb|ACR69409.1| integrase family protein [Edwardsiella ictaluri 93-146] Length = 295 Score = 93.6 bits (231), Expect = 4e-17, Method: Composition-based stats. Identities = 40/274 (14%), Positives = 77/274 (28%), Gaps = 34/274 (12%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR---- 126 L LI + ++S + D I R+ GD E R Sbjct: 8 LSDLILRWY---ELHGRMLSSGAGRKGKLDAICRRLGDPLAGDFDKGMFARYRERRLNGE 64 Query: 127 -------KHTPSSAIQFLTSMRVLFKWAVRQE-YVAINPCLSVERPKRKTEGIRPWTKED 178 + ++ + + +F R + NP + + + + + ++ Sbjct: 65 WNPKGKKRLQEATVNREQAYLHAVFAELRRLGEWEGGNPLDGIRQFREGDQELAFLYADE 124 Query: 179 MQQFKSFWSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE 236 + + + S+ L L +G R S+ + + K+ TV Sbjct: 125 ITRLLAACDASSKADLGGIVRVCLATGARWSEVQSLRQSQVLPGRLTFTHTKSKKNRTVP 184 Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK----SAHGVRKF 292 + + LL + FKA +AG++ H +R Sbjct: 185 ISERLQALLP-----------TKQGRLFTP--CYEAFKAALARAGLHLPKGQRTHVLRHT 231 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGA 326 A+ G L G T+ Y A Sbjct: 232 FASHFMMQGGNILVLQQILGHSTITMTMRYAHFA 265 >gi|226305786|ref|YP_002765746.1| integrase [Rhodococcus erythropolis PR4] gi|226184903|dbj|BAH33007.1| putative integrase [Rhodococcus erythropolis PR4] Length = 413 Score = 93.6 bits (231), Expect = 4e-17, Method: Composition-based stats. Identities = 58/362 (16%), Positives = 114/362 (31%), Gaps = 57/362 (15%) Query: 14 ERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKW 73 +R R GK+ + R + E +A +R P + TT+ Sbjct: 5 KRIRGGKVRWVARYVGSDGLERSKTFEFEKQAKAWTAERERELRRGEWIDPADQDTTVGQ 64 Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHT---- 129 L + SA +R E + R K+ IR+ V S ++ Sbjct: 65 LWQAWEMSAT----TDGTRKVRELVGRNLGR-LERTPIGKVRPSDIRTWVHSLRNGRPWV 119 Query: 130 -------PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI---RPWTKEDM 179 P++ F + F AV + +P + + ++ I +++ Sbjct: 120 KGCTGLAPNTVGNFQGQLAGCFSMAVADGLLLKSPTEGIAKRRKVDRAISRSELLNADEI 179 Query: 180 QQFKSFWSEG------------SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIK 225 Q S G + R+ +GLR + ++ + ++ Sbjct: 180 WQLVETASAGVQTGRNWIASQKTLARMII-VGAATGLRAGEIAGLRIRSVDFLRRELAVT 238 Query: 226 -TQKTGTI-------------ITVELPDG----FMKLLAMTPIGKET--FFINNDKQKMN 265 K+GT + LPD L P + F+ ++ + Sbjct: 239 EQSKSGTSEFLWAPLKTAAASRVIPLPDAAIGALSDELRENPNSDRSMPVFLTARQRMWS 298 Query: 266 ATQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETY 322 ++ F+A + G++ + H +R F A+ AGA+ + G + + E Y Sbjct: 299 SSTVGKSFQALRDRCGLDDEVTWHSLRHFYASALIHAGASVKTVQVRLGHEKAETTLEVY 358 Query: 323 TK 324 Sbjct: 359 AH 360 >gi|317126072|ref|YP_004100184.1| integrase [Intrasporangium calvum DSM 43043] gi|315590160|gb|ADU49457.1| integrase family protein [Intrasporangium calvum DSM 43043] Length = 374 Score = 93.6 bits (231), Expect = 4e-17, Method: Composition-based stats. Identities = 39/260 (15%), Positives = 79/260 (30%), Gaps = 33/260 (12%) Query: 87 LAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVL-- 143 L V++ + I+ + G + + +R V + SA + RVL Sbjct: 75 LKVSTATRYRGLMCGHILPRFGAWAVADLRHSDVRDWVNDLSASGLSAGTVRQAHRVLSL 134 Query: 144 -FKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYS 202 +V+ +A N V+ P+ R +++ + + L+ L + Sbjct: 135 ILSESVKDGRIARNVAAGVQLPRAVRADPRFLDADEVARLIA---GAGTNGLSIAVLAFC 191 Query: 203 GLRCSDSCRAGVQHLQ---------------NNIFSIKTQKTGTIITVELPDGFM---KL 244 GLR + V+ KT TV P + Sbjct: 192 GLRFGELAALRVRRANVLRRRLVVAESVTEVGGRLVWSLPKTNRTRTVPFPPSLTPQIEA 251 Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKA----KATKAGV-NKSAHGVRKFSATISAD 299 L + F + + + W + AG+ + H +R +A+++ Sbjct: 252 LCRGKGPDDLLFTAPEGGAL---RLGNWRRRVFDPACRAAGLVGVTPHDLRHTAASLAIA 308 Query: 300 AGATAHELMATYGWKTVDQA 319 +GA + G + Sbjct: 309 SGANVKAVQQMLGHASAAMT 328 >gi|260909620|ref|ZP_05916319.1| integrase [Prevotella sp. oral taxon 472 str. F0295] gi|260636263|gb|EEX54254.1| integrase [Prevotella sp. oral taxon 472 str. F0295] Length = 409 Score = 93.6 bits (231), Expect = 4e-17, Method: Composition-based stats. Identities = 41/210 (19%), Positives = 71/210 (33%), Gaps = 20/210 (9%) Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW- 186 T +A L ++ + A R+ + + K + + KE + + K+ + Sbjct: 183 STFYNAATHLKTV---CRLAYREGLADVPLFDKAKISKGDKKLPKALDKEALDKLKALYF 239 Query: 187 ----SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-----IFSIKTQKTGTIITVEL 237 E R F F Y+G D G +HL + QKT V+L Sbjct: 240 EDLEEEMETARDIFLFACYTGAAYCDLMELGKKHLVRDDEGSLWLKFNRQKTSVPCRVKL 299 Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSAT 295 ++L+ + + M + + KA +AG++ S H R AT Sbjct: 300 LPEAIRLMEKLHSDERETLL----PFMGYVTYQSYLKALRLRAGISFSFTTHTARHTFAT 355 Query: 296 IS-ADAGATAHELMATYGWKTVDQAETYTK 324 + + G + G V E Y K Sbjct: 356 LITLEQGVPIETVSKMLGHSNVSMTERYAK 385 >gi|254508879|ref|ZP_05120988.1| super-integron integrase IntIA [Vibrio parahaemolyticus 16] gi|219548193|gb|EED25209.1| super-integron integrase IntIA [Vibrio parahaemolyticus 16] Length = 320 Score = 93.6 bits (231), Expect = 4e-17, Method: Composition-based stats. Identities = 50/295 (16%), Positives = 93/295 (31%), Gaps = 59/295 (20%) Query: 88 AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWA 147 A + ++ + + I + K+ H+ + + A + + Sbjct: 19 APKTIQAYLLWITKFILFNDKAHPSKLNESHVEAFLTHLAVDCKVAAKTQALALNSISFL 78 Query: 148 VRQEYVAINPCLSVERPKRKT----EGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSG 203 R+ + LSVE +K+ + TK++M++F + +L L SG Sbjct: 79 YREYFRTP---LSVEMKFQKSQLDRKLPVVLTKDEMRRFLMHIDP--RYKLHIMLLYGSG 133 Query: 204 LRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLLAMTPIGKETFF---IN 258 LR + R VQ + + +++ K G V L + LL ++ IN Sbjct: 134 LRVMECVRLRVQDIDYDYKALRVWQGKGGKNRVVTLASEAISLLKEQQGIALRYYKKDIN 193 Query: 259 NDK-------------------------------------------QKMNATQFSIWFKA 275 + +N T K Sbjct: 194 SPGYAGVHIRPSLQRKYPEAELDFNWHFLFPSHQLSVDPNTGELKRHHINETSLQRAVKR 253 Query: 276 KATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 A +AG+ K + H +R AT ++GA + G V + YT +R Sbjct: 254 SAKEAGITKAVTCHTLRHSFATHLLESGADIRTVQEQLGHSDVKTTQIYTHVIER 308 >gi|254439723|ref|ZP_05053217.1| site-specific recombinase, phage integrase family protein [Octadecabacter antarcticus 307] gi|198255169|gb|EDY79483.1| site-specific recombinase, phage integrase family protein [Octadecabacter antarcticus 307] Length = 360 Score = 93.6 bits (231), Expect = 4e-17, Method: Composition-based stats. Identities = 49/322 (15%), Positives = 113/322 (35%), Gaps = 20/322 (6%) Query: 9 PFVTKERTRHGKIIYYFRK---GHGRRIRL-PYPHESTFIPAYMSALTGSTPKREYINSP 64 + + K +YF+K G +RI + +P S + R + Sbjct: 28 KGLVLFVGKRSKT-WYFQKDVGGQTKRILIGRFPIISAQAARQTALGFALEMGRGAGKAA 86 Query: 65 RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124 + TL+ + Y + ++I + ++ +I+ Sbjct: 87 QLGAPTLEAAMEGYLARPKLR--SETNKIGMRAQLTLHLKDWMRLPLDEISKAMAVRRHH 144 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 +PS+A L S R ++ A R + P +++E + K +G + ++ Sbjct: 145 DMAGSPSAANHVLRSFRAIYNHARRTCDLPECPTMAIEWFEDKPDGRIIENLKHWRKTID 204 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244 R+ +E LL++GLR ++ + +Q + + K G + + ++ Sbjct: 205 DLPNPIH-RVFYELLLFTGLRKTEVFTLKWEQIQEDRIHLPMTKNGRSFDLPISQLHHEI 263 Query: 245 LAMT-PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGAT 303 LA P+ ++ F ++ + + + + H R+ AT++ +AG Sbjct: 264 LAPLRPLSRDWVF------PSPKSESGHITRPER----LKYNPHMHRRTFATVAMEAGVL 313 Query: 304 AHELMATYGWKTVDQA-ETYTK 324 + + + YT+ Sbjct: 314 EEIVGRLLNHTPLSITGQRYTR 335 >gi|155024|gb|AAA72104.1| integrase [Shigella sonnei] Length = 337 Score = 93.6 bits (231), Expect = 4e-17, Method: Composition-based stats. Identities = 42/306 (13%), Positives = 93/306 (30%), Gaps = 62/306 (20%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHT 129 ++ + R+ + ++ + ++ + IR G + + + + + RK + Sbjct: 16 VLDQLRERIRYFHYSLRTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75 Query: 130 PSSAIQFLTSMRVLFK--WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 S+ Q L ++ + ++ + RP+ T +++ + F Sbjct: 76 VSTHRQALAALLFFYGKVLCTDLPWLQ-----EIGRPRPSRRLPVVLTPDEVVRILGFL- 129 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQH--LQNNIFSIKTQKTGTIITVELPDGFMKLL 245 EG RL + L +G+R S+ + V+ + ++ K + LP+ L Sbjct: 130 EGEH-RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSL 188 Query: 246 AMTPIGKETFFINN---------------------------------------------D 260 +++ + Sbjct: 189 REQLSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVR 248 Query: 261 KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318 + M F FK +AG+ K + H +R AT +G + G V Sbjct: 249 RHHMYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVST 308 Query: 319 AETYTK 324 YT Sbjct: 309 TMIYTH 314 >gi|323694873|ref|ZP_08109025.1| phage integrase family Site-specific recombinase [Clostridium symbiosum WAL-14673] gi|323501067|gb|EGB16977.1| phage integrase family Site-specific recombinase [Clostridium symbiosum WAL-14673] Length = 280 Score = 93.6 bits (231), Expect = 4e-17, Method: Composition-based stats. Identities = 38/281 (13%), Positives = 94/281 (33%), Gaps = 29/281 (10%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133 L EY + + N+ + + + + K + + + +S Sbjct: 13 LFGEYLEQDE---KSKNTIEKYRRDLRKFVEYIDGEEVTKELVIGFKEYLVEH-YAVNSV 68 Query: 134 IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193 + S+ ++A + V++ K++ + P ++++ + + F + R Sbjct: 69 NSIIASLNRFMQFA---GWQEF----RVKQLKKQRQVYCP-EEKELTKQEYFELIRTAKR 120 Query: 194 -------LAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE--LPDGFMKL 244 L + + +G+R S+ VQ ++N + + + + + L M Sbjct: 121 EGKEKIGLIIQTIGSTGIRISELPSITVQAVKNGVAEVDCKGKNRQVLLPRKLLVKLMYY 180 Query: 245 LAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISADAG 301 + I FI ++ + K AGVN+ H +R A Sbjct: 181 IRKEHIQCGPIFITKQGNPLDRSNIWKEMKKICRLAGVNEKKVFPHNLRHLFAYSFYQME 240 Query: 302 ATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSV 342 +L G ++ Y + G+++ ++I + Sbjct: 241 KDIAKLADLLGHSNINTTRIYIVSS-----GVEHRKQIEKM 276 >gi|323186140|gb|EFZ71495.1| integrase [Escherichia coli 1357] Length = 374 Score = 93.6 bits (231), Expect = 4e-17, Method: Composition-based stats. Identities = 50/301 (16%), Positives = 99/301 (32%), Gaps = 12/301 (3%) Query: 28 GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRK-SAHWGS 86 G+RIR + +S + L NS ++P ++ LI + K Sbjct: 69 RKGKRIRKKFKTKSDAVLYERWVLAQQHNNEWKGNSIDRRPLSV--LIDLWWKYHGQLMK 126 Query: 87 LAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKW 146 N+R+ + + + T+ +R + PS+ + + ++R +F Sbjct: 127 SGHNTRLKLLRLSEAMDDPCVHKLNTTMLTE-LRVSRIEQGIQPSTINREIGALRAMFTA 185 Query: 147 AVRQEY-VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLR 205 + + + NP ++ K + +K + Q +E RLA E LL +G R Sbjct: 186 LISSGHFLNDNPVQGLKGMKVNEREMGYLSKSECVQLLDALAENPDERLAVEILLSTGAR 245 Query: 206 CSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMN 265 + + + + + K TV + + + + G + F D + Sbjct: 246 WGEVAALEQRRVLHCRITFSKTKNSKNRTVPISESLFE--KIKKRGGKLVFPTLD-YPLV 302 Query: 266 ATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 K A ++ H +R A+ G L G + Y Sbjct: 303 RD----VIKTVAPDVPDGQAVHALRHTFASHFMMNGGNILTLQKILGHAKIQTTMIYAHL 358 Query: 326 A 326 A Sbjct: 359 A 359 >gi|307822732|ref|ZP_07652963.1| integrase family protein [Methylobacter tundripaludum SV96] gi|307736336|gb|EFO07182.1| integrase family protein [Methylobacter tundripaludum SV96] Length = 340 Score = 93.6 bits (231), Expect = 4e-17, Method: Composition-based stats. Identities = 47/316 (14%), Positives = 97/316 (30%), Gaps = 15/316 (4%) Query: 16 TRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTL-KWL 74 R F GRRI+ + + KP K Sbjct: 5 KRKDTWWIQFTAPDGRRIQ--QTAGTQLKDEAQELHDRLKADAWRVKYLGAKPRYFWKDA 62 Query: 75 ISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAI 134 + + ++ + + D+ + + K+ I++ + + S+ Sbjct: 63 VIRWLTEQG-HKKSIETDKVHLRWLDKHLSDVYLDEINKLKIDLIKNARLADGVSNSTVN 121 Query: 135 QFLTSMRVLFKWAVR-QEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR 193 + L+ +R + A E++ P +R T+++ + E + Sbjct: 122 RLLSILRAILNRAKDDWEWIDSVP--GFRFLPEPAGRVRWITRDESVRLIEELPEHLKFM 179 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQKTGTIITVELPDGFMKLLAMTP 249 + F +GLR S+ + K G I V L D + ++ + Sbjct: 180 VRFALA--TGLRESNVTHLQWSQIDIQRRCAWVLADQAKAGKAIAVPLNDDALDVI-ASQ 236 Query: 250 IGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELM 308 +GK + K + + F+ +AG++ H +R A+ +G H L Sbjct: 237 VGKHDVRVFTYKGNVVNDGNTKSFRKALKRAGIDDFRWHDLRHTWASWHVQSGTPLHVLK 296 Query: 309 ATYGWKTVDQAETYTK 324 GW + Y Sbjct: 297 ELGGWADISMVLRYAH 312 >gi|297592290|gb|ADI47028.1| Rci [Escherichia coli] Length = 365 Score = 93.6 bits (231), Expect = 4e-17, Method: Composition-based stats. Identities = 44/235 (18%), Positives = 83/235 (35%), Gaps = 13/235 (5%) Query: 96 ESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWA-VRQEYVA 154 E Y D+I D + + R+ T ++ L + LF A V Sbjct: 38 ERYMDEITTV--DIATYRDQRLAQINPRTGRQITGNTVRLELALLSSLFNIASVEWGTCR 95 Query: 155 INPCLSVERPKRKTEGIRPWTKEDMQQF-KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAG 213 +NP V +PK + R T + ++ + F + Q + F L + +R + Sbjct: 96 MNPVELVRKPKISSGRDRRLTSGEERRLSRYFRDKNQQLYVIFHLALETAMRQGEILTLR 155 Query: 214 VQHLQN--NIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSI 271 +HL + + K G V L L + P IN + ++ F Sbjct: 156 WEHLDLQHGVAHLPETKNGLPRDVPLSRKARNYLQILPQQ-----INGNVFSYTSSGFKS 210 Query: 272 WFKAKATKAGV-NKSAHGVRKFSATISADAG-ATAHELMATYGWKTVDQAETYTK 324 ++ + N H +R + + + G E+ A G ++++ + YT Sbjct: 211 AWRTALLDLKIENLHFHDLRHEAISRFFELGTLNVIEVAAISGHRSLNMLKRYTH 265 >gi|126725541|ref|ZP_01741383.1| site-specific tyrosine recombinase XerC [Rhodobacterales bacterium HTCC2150] gi|126704745|gb|EBA03836.1| site-specific tyrosine recombinase XerC [Rhodobacterales bacterium HTCC2150] Length = 306 Score = 93.6 bits (231), Expect = 4e-17, Method: Composition-based stats. Identities = 46/283 (16%), Positives = 86/283 (30%), Gaps = 26/283 (9%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDF----DYRKITTKHIRSGVESRKH 128 WL + S+ + + G+ + + + IRS + + Sbjct: 15 WLSHIKSLDDAAQNTLDAYTRDLTSFLSFLTQHFGETSGISALKAVGQRDIRSWMAFERG 74 Query: 129 TPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 + SA + L++++ ++W E LS PK + + RP + + Sbjct: 75 SGVSARSLARKLSAVKSFYRWFGEHEGFEPTAVLSARTPKFQKKLPRPIAPDAARAMIDT 134 Query: 186 WS-------EGSQPRLAFEFLLYSGLRCSDSCRA-GVQHLQNNIFSIKTQKTGTIITVEL 237 G + L GLR S++ G ++ I K G V + Sbjct: 135 VPLQSEKNWVGLRDTAVVTVLYGCGLRISEALGLLGSDAPLPDVLRI-LGKGGKERIVPV 193 Query: 238 PDGFM----KLLAMTPI---GKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HG 288 + + P F +N + G+ +A H Sbjct: 194 IPAAKRAVDEYIRACPHPIEADSPLFRGIRGGALNPRIIQGVVAKARMQLGLPATATPHA 253 Query: 289 VRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 +R AT +AG + G ++ + YT D RL Sbjct: 254 LRHSFATHLLEAGGDLRSIQELLGHASLSTTQAYT-AVDTARL 295 >gi|319937805|ref|ZP_08012208.1| integrase [Coprobacillus sp. 29_1] gi|319807240|gb|EFW03854.1| integrase [Coprobacillus sp. 29_1] Length = 390 Score = 93.6 bits (231), Expect = 4e-17, Method: Composition-based stats. Identities = 61/377 (16%), Positives = 111/377 (29%), Gaps = 59/377 (15%) Query: 9 PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKP 68 ++ K G Y + P P P+ E K Sbjct: 17 KYLYKYVDAFGNTKYVYAWRLTP--TDPTPKGKREKPSLRELEQQIRRDIEDGIDSTGKK 74 Query: 69 TTLKWLISEY-RKSAHWGSLAVNSRISFESYFDQI-IRKSGDFDYRKITTKHIRSGVESR 126 T L Y +++A ++ +++ + + K G I + Sbjct: 75 MT---LCQLYAKQNAQRANVKKSTQKQRKQLMRLLKEDKLGARSIDTIKPSDAKEWALRM 131 Query: 127 KHTP---SSAIQFLTSMRVLFKWAVRQEYVAINPC--LSVERPKRKTEGIRPWTKEDMQQ 181 K ++ S++ F A++ + V NP E + T+ T+E Q Sbjct: 132 KDKGFSYNTINNHKRSLKASFYIAIQDDCVRKNPFDFKLSEVLENDTKEKVALTEEQEQA 191 Query: 182 FKSFWSEGSQPRLAFE---FLLYSGLRCSDSCRAGVQHLQ----------------NNIF 222 SF + ++ LL +GLR S+ C V + + Sbjct: 192 LLSFIKTDNVYHKHYDDVLILLKTGLRISELCGLTVADIDFKNEVVIIDHQLLKSKEQGY 251 Query: 223 SIKTQKTGTIIT-VELPDG----FMKLLAMTPIGKET--------FFINNDKQKMNATQF 269 I+T KT + I V L F +++ P + F+N+ + A + Sbjct: 252 YIETPKTKSGIRQVPLSRETIQAFQRVMKKRPKAEPFVIDGQSNFLFVNHKGKPKVAIDY 311 Query: 270 SIWFKAKATKAGVNK--------SAHGVRKFSATISADAGATAHELMATYGWKTVD---- 317 + F K + + H +R T A +L G + Sbjct: 312 NALFVRMVKKYNKHHKDNPLPHITPHTLRHTFCTRLASKNMNPKDLQYIMGHSNISITMN 371 Query: 318 ---QAETYTKGADRIRL 331 A T ++ RL Sbjct: 372 WYAHASIDTAKSEVQRL 388 >gi|194398664|ref|YP_002038654.1| phage integrase family site-specific recombinase [Streptococcus pneumoniae G54] gi|194358331|gb|ACF56779.1| site-specific recombinase, phage integrase family [Streptococcus pneumoniae G54] Length = 377 Score = 93.6 bits (231), Expect = 4e-17, Method: Composition-based stats. Identities = 40/276 (14%), Positives = 94/276 (34%), Gaps = 41/276 (14%) Query: 90 NSR-ISFESYFDQ---IIRKSGDFDYRKI--TTKHIRSGVESRKHTP---SSAIQFLTSM 140 N++ ++ + ++ G Y I +H+R V P ++ + + + Sbjct: 85 NTQDNNYNKHIKDYFSMVDNVGKLTYEDIYQFREHLRQKVAKNSDKPLSTNTINKIMILL 144 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-SEGSQPRLAFEFL 199 + +F +R+ Y + NP +++ + ++ WT ++ Q+F + + E +L F L Sbjct: 145 KKIFDVGLRKGYYSSNPAKLIKKLPIEKTKMQFWTVKEFQKFLTLFEPEEYNIKLLFTVL 204 Query: 200 LYSGLRCSDSCRAGVQHLQ---------------NNIFSIKTQKTGTII-TVELPDGFMK 243 ++GLR ++ Q + + I T KT + + + Sbjct: 205 FFTGLRLGEALALTWQDIDFSSNTIHITKSVYVNKGVTHISTTKTKAGTRRIVINKKLSQ 264 Query: 244 LLAMTPIGKETFFINNDKQKMNATQFSI------------WFKAKATKAG-VNK-SAHGV 289 L ++ + F +K + + K H Sbjct: 265 ELQDWEKRQKHLLEQFTNNSLTLQVFQNSPITITKNAIEKQYKKIIERDSTLKKIRIHDF 324 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324 R A++ + G + G ++ +TY+ Sbjct: 325 RHSHASLLINQGEDYLVVKERLGHASITTTIDTYSH 360 >gi|168214027|ref|ZP_02639652.1| prophage LambdaBa04, site-specific recombinase, phage integrase family [Clostridium perfringens CPE str. F4969] gi|170714519|gb|EDT26701.1| prophage LambdaBa04, site-specific recombinase, phage integrase family [Clostridium perfringens CPE str. F4969] Length = 368 Score = 93.6 bits (231), Expect = 4e-17, Method: Composition-based stats. Identities = 54/336 (16%), Positives = 114/336 (33%), Gaps = 46/336 (13%) Query: 41 STFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD 100 F+ Y S+ P+ K LK I ++ + S+ +N+R ++ S + Sbjct: 42 EKFVNEY------SSKVDNGFLLPKSKDIYLKDFILDWFHNHKVLSIGINTRNNYLSRIE 95 Query: 101 -QIIRKSGDFDYRKITTKHIRSGVE-----SRKHTPSSAIQFLTSMRVLFKWAVRQEYVA 154 II G++ ++ T I++ PSSA + + ++ K+A + + + Sbjct: 96 TYIIPLLGNYKLTELDTLTIQNFYNHLLTKDNPLKPSSAKKVIEALSNCLKYAKKLKLIT 155 Query: 155 INPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGV 214 P +E+ + I W+K+ + F + + + +G+R + C Sbjct: 156 YLPT-DIEKVNIEKPKIEFWSKQQLDFFLNEIKD-TYLYFPVLICALTGVRVGELCGLKW 213 Query: 215 QHLQ--NNIFSIKTQ-----------------KTGTIITVELPDGFMKLLAMTPIGKETF 255 + +I Q T + T+ +P +K F Sbjct: 214 CDVDFRRGYLNITRQVISDKSTNTLVCTENLKTTKSDRTISIPKILLKEFEKNLKDPNDF 273 Query: 256 FINNDKQKMN-----ATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMAT 310 + + + KM + F+ + S HG+R AT+ G + Sbjct: 274 IVLSRENKMCNPRNISMDFTKKVNKYKDRL-PQISIHGLRHTHATLLILNGENIKIVSDR 332 Query: 311 YGWKTVDQA-ETYTKGADRIRLGIKNSRRISSVVDS 345 G + TYT + + + ++D+ Sbjct: 333 LGHNDITTTLNTYTH------IMEEMKDNTAELLDN 362 >gi|13488149|ref|NP_085856.1| integrase/recombinase [Mesorhizobium loti MAFF303099] gi|14028105|dbj|BAB54697.1| integrase/recombinase [Mesorhizobium loti MAFF303099] Length = 299 Score = 93.6 bits (231), Expect = 4e-17, Method: Composition-based stats. Identities = 34/254 (13%), Positives = 83/254 (32%), Gaps = 17/254 (6%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHTPSSAIQFLTSM 140 +L+ +++ S+ Q R + + +R+ +K P S ++++ Sbjct: 21 RNLSPHTQDSYLLQVSQFARHFAKSP-ALLCQEDVRTYQVYLTNEKKLAPKSIHVAVSAL 79 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLL 200 R L++ + E+ + + P+ + E++ F E + + Sbjct: 80 RFLYRVTLGFEW-DFD--RIIPCPRVPKTLAVILSPEEVLHFLG-CVESLKHQTILTTCY 135 Query: 201 YSGLRCSDSCRAGVQHLQNNIFSIK--TQKTGTIITVELPDGFMKLL----AMTPIGKET 254 +GLR S++ + + ++ K V L ++ L Sbjct: 136 AAGLRISEAVHLRPEAIDRQRMVLRVDQGKGQKDRYVMLSARLLETLTDYWRAVRPKTWM 195 Query: 255 FFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYG 312 F + ++ +G+ K + H +R A +AG + G Sbjct: 196 FPGTIPNEPISTNAVQNACGKAHRLSGLGKPVTPHSLRHAFACHLLEAGTDIRTIQLLLG 255 Query: 313 WKTVDQAETYTKGA 326 +++ Y + A Sbjct: 256 HRSLSTTSQYLRIA 269 >gi|193065311|ref|ZP_03046383.1| integrase [Escherichia coli E22] gi|213615968|ref|ZP_03371794.1| phage integrase [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|192927105|gb|EDV81727.1| integrase [Escherichia coli E22] Length = 312 Score = 93.6 bits (231), Expect = 4e-17, Method: Composition-based stats. Identities = 49/301 (16%), Positives = 98/301 (32%), Gaps = 12/301 (3%) Query: 28 GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRK-SAHWGS 86 G+RIR + +S + L NS ++P ++ LI + K Sbjct: 6 RKGKRIRKKFKTKSDAVLYERWVLAQQHNNEWKGNSIDRRPLSV--LIDLWWKYHGQLMK 63 Query: 87 LAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKW 146 N+R+ + + + T+ +R + PS+ + + ++ +F Sbjct: 64 SGHNTRLKLLRLSEAMDDPCVHKLNTTMLTE-LRVSRIEQGIQPSTINREIGALSAMFTA 122 Query: 147 AVRQEY-VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLR 205 + + + NP ++ K + +K + Q +E RLA E LL +G R Sbjct: 123 LISSGHFLNDNPVQGLKGMKVNEREMGYLSKSECVQLLDALAENPDERLAVEILLSTGAR 182 Query: 206 CSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMN 265 + + + + + K TV + + + + G + F D Sbjct: 183 WGEVAALEQRRVLHCRITFSKTKNSKNRTVPISESLFE--KIKKRGGKLVFPTLD----- 235 Query: 266 ATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 + K A ++ H +R A+ G L G + Y Sbjct: 236 YSLVRDVIKTVAPDVPDGQAVHALRHTFASHFMMNGGNILTLQKILGHAKIQTTMIYAHL 295 Query: 326 A 326 A Sbjct: 296 A 296 >gi|307564601|ref|ZP_07627138.1| site-specific recombinase, phage integrase family [Prevotella amnii CRIS 21A-A] gi|307346686|gb|EFN91986.1| site-specific recombinase, phage integrase family [Prevotella amnii CRIS 21A-A] Length = 439 Score = 93.6 bits (231), Expect = 4e-17, Method: Composition-based stats. Identities = 43/283 (15%), Positives = 99/283 (34%), Gaps = 25/283 (8%) Query: 72 KWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS 131 K + +R S +L + +R + + + + + + S Sbjct: 130 KATVRAFRDSRKNFALFLKTREN--------EDCLPKEADKDLIESYRLFMLRDLGNKES 181 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGS- 190 + L + + + A+++ Y+ +P ++ + T T +D+ + S+ S Sbjct: 182 TVSNRLRHLHQVIRKALQERYIHADPFELID-IETPTYERNALTSDDLHKLLSYRPHRSV 240 Query: 191 --QPRLAFEFLLYSGLRCSDSCRAGVQHL-----QNNIFSIKTQKTGTIITVELPDGFMK 243 RL F ++GL SD + + + S+ KT V L + Sbjct: 241 DNHCRLIFLLGCFTGLAFSDLKKLRMGDVYTFGDGRRYISLCRTKTQNRSIVPLLPIAEE 300 Query: 244 LLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVN----KSAHGVRKFSATIS-A 298 +L + G++ + ++ + F+ + KAG+ ++H R AT Sbjct: 301 ILTIVSDGRKEGLL--FREFPTNSHFNRKIRDIIIKAGLPSHTEATSHTARHTFATTICL 358 Query: 299 DAGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISS 341 + G + G + + E Y K + ++ + + S Sbjct: 359 ENGLPIETVSKMLGHRFISTTELYAK-VSKSKIAREMQPLMGS 400 >gi|254820912|ref|ZP_05225913.1| phage-related integrase [Mycobacterium intracellulare ATCC 13950] Length = 403 Score = 93.6 bits (231), Expect = 4e-17, Method: Composition-based stats. Identities = 40/283 (14%), Positives = 91/283 (32%), Gaps = 27/283 (9%) Query: 63 SPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSG 122 +PR T++ + + + + ++ QI+ + GD ++ +++ Sbjct: 81 APRDAKLTVQQWCDTWIE--GYKVHREGTVREARTHIRQIVTEFGDAPLTQVRPSQVKAW 138 Query: 123 VESRKHTPSSAIQFL---TSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDM 179 + A + + + AV + NPC P + T E + Sbjct: 139 TARLRADGMKASYIYALHSRLSQILSDAVHDGVLGRNPCSRRTAPPMGKAKVYVATTEQV 198 Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQ------KT-G 230 + + +A ++GLR ++ V + + K Q KT G Sbjct: 199 WALHDAVPDPLK--VAVLLGAFAGLRVAEVSGLRVSDVDFIRGVVHPKQQWPDKPLKTEG 256 Query: 231 TIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKA---TKAGVNK--- 284 + + +P LL+ + + + + W +A + G+ Sbjct: 257 SSAPIPIPQDLALLLSASVQKYPAEMMVTNGPG--TDRCGPWIIERAIRDVRGGIEGLPE 314 Query: 285 --SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324 S H +R + A++ G + A + +TY+ Sbjct: 315 GFSFHDLRHYLASLLIARGCDVKTVQARLRHSSAKTTLDTYSH 357 >gi|158425506|ref|YP_001526798.1| putative integrase protein [Azorhizobium caulinodans ORS 571] gi|158332395|dbj|BAF89880.1| putative integrase protein [Azorhizobium caulinodans ORS 571] Length = 445 Score = 93.6 bits (231), Expect = 4e-17, Method: Composition-based stats. Identities = 58/363 (15%), Positives = 104/363 (28%), Gaps = 42/363 (11%) Query: 7 LPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRK 66 L F+ + RT G+ R+ R L E A + + + R Sbjct: 43 LKSFIVQYRTPEGR----HRRRVIGRYGL-MTVEQARDAARDILMAVAKGCDPEEAATRT 97 Query: 67 KPTTLKWLISEYRKSAHWGSLAVNSRI---------SFESYFDQIIRKSGDFDYRKITTK 117 T+ + Y A G + R I G + Sbjct: 98 DDLTIGAVCDWYLDEAEAGRILGKRRRPIKASTLAMDRSRIDAHIKPLLGKRIINTLKLG 157 Query: 118 HIRSGVESRKHTPSS-----------------AIQFLTSMRVLFKWAVRQEYVAINPCLS 160 I +S A + ++++ + + AVR + NP Sbjct: 158 DIEGAQADIAAGKTSKARVGSRGGATTGGEGVAARTMSTLHSILEHAVRLGKITSNPAKG 217 Query: 161 VERPKRKTEGIRPWTKEDMQQF------KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAG- 213 V R T R ++ ++++ E A F L +GLR + Sbjct: 218 VRRL-ASTPRDRRLSRAEIEKLGKAMRIAEQDGEHPTGLAAIRFFLMTGLRRMEGLALER 276 Query: 214 -VQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIW 272 H + K+G V + + LL P FF D + + Sbjct: 277 AWLHDEEGSIRFPDTKSGAQTRV-IGRAAVDLLLAQPQAGSRFFFPADWGEGHFVGIVRV 335 Query: 273 FKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADRIRL 331 A + + + H +R A+++ D G + + A G + Y + +RL Sbjct: 336 LDRLCAMARLEDVTPHTLRHTFASVAGDLGFSELTIAALLGHAARGVTQRYIHIDEALRL 395 Query: 332 GIK 334 Sbjct: 396 AAD 398 >gi|153005509|ref|YP_001379834.1| phage integrase family protein [Anaeromyxobacter sp. Fw109-5] gi|152029082|gb|ABS26850.1| phage integrase family protein [Anaeromyxobacter sp. Fw109-5] Length = 381 Score = 93.6 bits (231), Expect = 4e-17, Method: Composition-based stats. Identities = 38/281 (13%), Positives = 83/281 (29%), Gaps = 19/281 (6%) Query: 62 NSPRKKPTTLKWLISEY-RKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120 +K+ TL ++ A ++ + E + + + GD ++ ++ Sbjct: 68 APVKKEVLTLAEFWPKFIEGHAQANQQKPSTIATHERIWKKHLSSLGDRRLDEVDDAQVQ 127 Query: 121 ---SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKE 177 + ++K P S +T + + K V + PC + K + + E Sbjct: 128 LLKGRLSAQKLKPKSVNNVVTVLSKMLKVGVEWRVIEAMPCR-IRLLKSAKPVVEFYEDE 186 Query: 178 DMQQFKSFW-SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ--------- 227 ++++ S + +A +GLR + L +K Q Sbjct: 187 ELERLVSAAGKVDPRTHVAVLLGGDAGLRLGEILALEWSDLDFTRGLMKVQRSECDGAVT 246 Query: 228 --KTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV--N 283 K G V + L K + + + +AG+ Sbjct: 247 LPKGGKPRVVPMTARLKAALHAHRHLKGPRILYEGIEPITKWPLKWLIDVAERRAGLRQG 306 Query: 284 KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 H +R + A + G ++V+ Y Sbjct: 307 GRVHILRHTFCSRLAARNVPMLTIKGLAGHQSVETTMRYLH 347 >gi|7339576|emb|CAB82887.1| integrase [Salmonella enterica subsp. enterica serovar Typhimurium] Length = 334 Score = 93.6 bits (231), Expect = 4e-17, Method: Composition-based stats. Identities = 42/306 (13%), Positives = 94/306 (30%), Gaps = 62/306 (20%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHT 129 ++ + R+ + ++ + ++ ++ IR G + + + + + RK + Sbjct: 16 VLDQLRERIRYLHYSLRTEQAYVNWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75 Query: 130 PSSAIQFLTSMRVLFK--WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 S+ Q L ++ + ++ + RP+ T +++ + F Sbjct: 76 VSTHRQALAALLFFYGKVLCTDLPWLQ-----EIGRPRPSRRLPVVLTPDEVVRILGFL- 129 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQH--LQNNIFSIKTQKTGTIITVELPDGFMKLL 245 EG RL + L +G+R S+ + V+ + ++ K + LP+ L Sbjct: 130 EGEH-RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPEAVAPSL 188 Query: 246 AMTPIGKETFFINN---------------------------------------------D 260 +++ + Sbjct: 189 REQLSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVR 248 Query: 261 KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318 + M F FK +AG+ K + H +R AT +G + G V Sbjct: 249 RHHMYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVST 308 Query: 319 AETYTK 324 YT Sbjct: 309 TMIYTH 314 >gi|254452471|ref|ZP_05065908.1| phage integrase family protein, putative [Octadecabacter antarcticus 238] gi|198266877|gb|EDY91147.1| phage integrase family protein, putative [Octadecabacter antarcticus 238] Length = 368 Score = 93.6 bits (231), Expect = 4e-17, Method: Composition-based stats. Identities = 47/322 (14%), Positives = 108/322 (33%), Gaps = 20/322 (6%) Query: 9 PFVTKERTRHGKIIYYFRK---GHGRRIRL-PYPHESTFIPAYMSALTGSTPKREYINSP 64 + + K +YF+K G +RI + +P S + R + Sbjct: 38 KGLVLFVGKRSKT-WYFQKDVGGQTKRILIGRFPIISAQAARQTALGFALEMGRGAGKAA 96 Query: 65 RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124 + TL+ + Y + ++I + ++ +I+ Sbjct: 97 QIGAPTLEAAMEVYLARPKLR--SETNKIGMRAQLTLHLKDWMRLPLDEISKAMTVRRHH 154 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 +PS+A L S R ++ A R + P +++E + K +G + ++ Sbjct: 155 DMAGSPSAANHVLRSFRAIYNHARRTCDLPECPTMAIEWFEDKPDGRIIENLKHWRKTID 214 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244 R+ +E LL++GLR ++ + + + K G + + ++ Sbjct: 215 DLPNPIH-RVFYELLLFTGLRKTEVFTLKWDQILEDRIHLPMTKNGRSFDLPISQLHHEI 273 Query: 245 LAMT-PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGAT 303 LA P+ + F ++ + + + H R+ AT++ +AG Sbjct: 274 LAPLRPLSSDWVF------PSPKSETGHITRPVR----LKYNPHMHRRTFATVAMEAGVL 323 Query: 304 AHELMATYGWKTVDQA-ETYTK 324 + + + Y + Sbjct: 324 EEIVGRLLNHTQLSITGQRYVR 345 >gi|254438003|ref|ZP_05051497.1| site-specific recombinase, phage integrase family protein [Octadecabacter antarcticus 307] gi|198253449|gb|EDY77763.1| site-specific recombinase, phage integrase family protein [Octadecabacter antarcticus 307] Length = 368 Score = 93.6 bits (231), Expect = 4e-17, Method: Composition-based stats. Identities = 46/322 (14%), Positives = 109/322 (33%), Gaps = 20/322 (6%) Query: 9 PFVTKERTRHGKIIYYFRK---GHGRRIRL-PYPHESTFIPAYMSALTGSTPKREYINSP 64 + + K +YF+K G +RI + +P S + R + Sbjct: 38 KGLVLFVGKRSKT-WYFQKDVGGQTKRILIGRFPIISAQAARQTALGFALEMGRGAGKAA 96 Query: 65 RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124 + TL+ + Y + +++ + ++ +I+ Sbjct: 97 QIGAPTLEAAMEVYLARPKLR--SETNKVGMRAQLTLHLKDWMRLPLDEISKSMAVRRHH 154 Query: 125 SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKS 184 +PS+A L S R ++ A R + P +++E + K +G + ++ Sbjct: 155 DMAGSPSAANHVLRSFRAIYNHARRTCDLPECPTMAIEWFEDKPDGRIIENLKHWRKTID 214 Query: 185 FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL 244 R+ +E LL++GLR ++ + + + + K G + + ++ Sbjct: 215 DLPNPIH-RVFYELLLFTGLRKTEVFTLKWEQILEDRIHLPMTKNGRSFDLPISQLHHEI 273 Query: 245 LAMT-PIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGAT 303 LA P+ + F ++ + + + H R+ AT++ +AG Sbjct: 274 LAPLRPLSSDWVF------PSPKSETGHITRPVR----LKYNPHMHRRTFATVAMEAGVL 323 Query: 304 AHELMATYGWKTVDQA-ETYTK 324 + + + Y + Sbjct: 324 EEIVGRLLNHTPLSITGQRYVR 345 >gi|159902922|ref|YP_001550266.1| site-specific recombinase XerD [Prochlorococcus marinus str. MIT 9211] gi|159888098|gb|ABX08312.1| Site-specific recombinase XerD [Prochlorococcus marinus str. MIT 9211] Length = 327 Score = 93.6 bits (231), Expect = 4e-17, Method: Composition-based stats. Identities = 50/317 (15%), Positives = 105/317 (33%), Gaps = 27/317 (8%) Query: 26 RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWG 85 RK + + + + +A+ GS + ++ P P LK I Y Sbjct: 16 RKKQYQGPKAKTFSSKSQAQLWANAVEGSLKRPTQLDQP--PPQILKEAIDLYIDGPLQK 73 Query: 86 SLA-VNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR--KHTPSSAIQFLTSMRV 142 + N + + + G +++ +H + R K P++ ++ L +RV Sbjct: 74 HRSGHNEQYPLRAMANSW---MGGVLLSEMSIRHFALWRDERLLKVKPNTVMRELRILRV 130 Query: 143 LFKWAVRQE--YVAINPCLSVE-RPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFE-F 198 L WA ++ + NP ++ R +++ + + L Sbjct: 131 LLDWAKDEQGCLLKSNPARELKVRGTHDARIPHLTKQQEQDLLQQLAQAKNPNHLRLTQL 190 Query: 199 LLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTG--------TIITVELPDGFMKLLAMTPI 250 L +G+R S+ L ++ + + + V L ++LLA P Sbjct: 191 ALATGMRRSELLSMKWDDLDLDLRLVCLTRKDCAAQGMQRSERLVPLSPQAVELLAQYPK 250 Query: 251 GKETFFINNDKQKMNATQFSIWFKAKATKAGVN-KSAHGVRKFSATISADAGATAHELMA 309 ++ + + F AG+N H +R + + G A ++ A Sbjct: 251 EQQHIIGLSSGSARHG------FDRARKAAGLNQLRFHDLRHIAISKMWAEGMNALQISA 304 Query: 310 TYGWKTVDQAETYTKGA 326 G K + Y+ Sbjct: 305 ISGHKDLRMLMRYSHYQ 321 >gi|300776492|ref|ZP_07086350.1| mobilizable transposon [Chryseobacterium gleum ATCC 35910] gi|300502002|gb|EFK33142.1| mobilizable transposon [Chryseobacterium gleum ATCC 35910] Length = 429 Score = 93.6 bits (231), Expect = 4e-17, Method: Composition-based stats. Identities = 43/274 (15%), Positives = 89/274 (32%), Gaps = 22/274 (8%) Query: 88 AVNSRISFESYFDQIIRKSGD-FDYRKITTKHIRSGVESRKHTP-----------SSAIQ 135 + + R ++ + II SGD + KI P +SA Sbjct: 149 SDSIRTNWRCLIEFIIEFSGDDLRFSKIDLSFADDFKLYLLSAPYRGKKKGILSNNSAAT 208 Query: 136 FLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLA 195 + + + + A Y I+ ++ + + E++ + E + + A Sbjct: 209 YFSIFKAIVSQAFIDGYFIIDLSAKIKGIGEQESFREHLSLEELNLLVNTPCENDELKRA 268 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQKTGTIITVELPDGFMKLLAMTPIG 251 F +GLR D R + + + +KT + + + + L + Sbjct: 269 SLFSALTGLRHCDIKRLKWKEIDVQSNRIKIQFRQKKTKGVEYTPISEQAIHLCGTPRLP 328 Query: 252 KETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMA 309 ++ F N + W K AG+ K + H R AT+ G + + Sbjct: 329 EQLVFENLQDSSWISRPLEKWVK----SAGITKHITFHCFRHTFATLQLSLGTDIYTVSK 384 Query: 310 TYGWKTVDQAETYTKGADRIRLGIKNSRRISSVV 343 G V + Y K D ++ + ++ + Sbjct: 385 MLGHSKVTTTQVYAKVVDELKNRAAGAIKLDENI 418 >gi|32474798|ref|NP_867792.1| integrase/recombinase Y4QK [Rhodopirellula baltica SH 1] gi|32445338|emb|CAD75339.1| putative integrase/recombinase Y4QK [Rhodopirellula baltica SH 1] Length = 461 Score = 93.6 bits (231), Expect = 4e-17, Method: Composition-based stats. Identities = 40/259 (15%), Positives = 90/259 (34%), Gaps = 16/259 (6%) Query: 88 AVNSRISFES-YFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKW 146 AV++ ++ S + + G +I + IR +E +SA + ++ L Sbjct: 81 AVSTIKNYRSAWVCFLRWYRG--PLDQIDQEDIREYLELLVAGGASASEVSVTLSALRTG 138 Query: 147 AVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRC 206 + + + + P++ + +K+++Q+ + + +L L +GLR Sbjct: 139 LDKFCLLRC--TVGLVSPRKSKQLPVVMSKKEVQRMME-AARTLRDKLLLTVLYATGLRV 195 Query: 207 SDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLLAMT---PIGKETFFINNDK 261 ++ R ++ K V L D + L+ G F + + Sbjct: 196 AEVARLQWSDFDFDRQQIRVQLGKGKKDRYVMLADDLLPLMRQLWRHTKGVGYLFPSEGR 255 Query: 262 Q---KMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTV 316 + ++ K +G+ K + H R AT ++G + G + Sbjct: 256 RVDRHLSPRTIQRAVKQARILSGIGKAVTPHSFRHSFATHLIESGTDIRFIQKLLGHTNL 315 Query: 317 DQAETYTKGADRIRLGIKN 335 + YTK A + + Sbjct: 316 ETTSLYTKVARMKATAVAS 334 >gi|307293564|ref|ZP_07573408.1| integrase family protein [Sphingobium chlorophenolicum L-1] gi|306879715|gb|EFN10932.1| integrase family protein [Sphingobium chlorophenolicum L-1] Length = 378 Score = 93.6 bits (231), Expect = 4e-17, Method: Composition-based stats. Identities = 63/347 (18%), Positives = 105/347 (30%), Gaps = 26/347 (7%) Query: 1 MTPSLRLPPF-VTKERTRHGKIIYYFRKG-HGRRIRLPYPHESTFIPAYMSA------LT 52 + P +L +T ER+++G +Y G RI ES + + T Sbjct: 16 LAPGKKLAEHGITVERSQNGDAVYRINIMVDGERIHRVVGRESDGVTRQHAEDMIATLRT 75 Query: 53 GSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDY 111 + +R + RK K Y K + E + + G Sbjct: 76 RAREERLDLPKGRKIAIPFKEAAESYIK--RLKEEGGKTIERKERTLELYLTPALGTKPL 133 Query: 112 RKITTKH---IRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKT 168 KIT+ R+ ++ + + + L+ AV +VA P + R K Sbjct: 134 SKITSSDLAVYRAQRLKAGAKDATINREMAVVSHLYSKAVDWGWVAAKP--KIIRAKEGD 191 Query: 169 EGIRPWTKEDMQQF--KSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN--IFSI 224 I T + + + L + +R S+ +HL + I Sbjct: 192 GRIAYLTPDQCARIIAAARNDLSPHIHPFCVIALSTSMRMSEVLSIKPEHLDFDKRRIFI 251 Query: 225 KTQKTGT---IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAG 281 + K G +T L D L P E F N+ + + AG Sbjct: 252 PSAKAGQREQPMTKGLSDFLKAQLESLPDDAEWLFPNSASKSGRVMTIRKAHRRVVKAAG 311 Query: 282 VNKSA---HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 +N H R + T AG + G KT+ Y Sbjct: 312 LNPDEVLRHTFRHTAITHLVQAGVDLPTVQKVSGHKTLAMVARYAHA 358 >gi|257898705|ref|ZP_05678358.1| integrase-recombinase [Enterococcus faecium Com15] gi|257836617|gb|EEV61691.1| integrase-recombinase [Enterococcus faecium Com15] Length = 313 Score = 93.6 bits (231), Expect = 4e-17, Method: Composition-based stats. Identities = 37/289 (12%), Positives = 87/289 (30%), Gaps = 46/289 (15%) Query: 85 GSLAVNSRISFESYFDQIIR--KSGDFDYRKITTKHIRSGVESRKHTPSSA----IQFLT 138 ++ + + + K + + T K A L Sbjct: 8 RGISQKTIKKHQKFLKLFFEFLKKEQIYFIEDVTPKSIRQFMLMKLEEGCAETYVNSHLR 67 Query: 139 SMRVLFKWAVRQEYV--AINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE-------- 188 S+R FK+ V ++Y+ NPC+ V+ K + I+ + ++++ + + Sbjct: 68 SIRAYFKYCVDEDYIRYDRNPCMRVKWVKERKVIIQTFNDMEIKEMLNVAKKLTFFKPQK 127 Query: 189 -------------GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235 + L L+ +GLR ++ H+ N ++ K V Sbjct: 128 MDKQHTGYQTKFTNQRDYLLLLILVDTGLRINEVMNLKDFHITNKELFVENGKGKKDRIV 187 Query: 236 ELPDG-FMKLLAMTPIG------------KETFFINNDKQKMNA---TQFSIWFKAKAT- 278 + + + + F+ + ++ N + I + Sbjct: 188 HCSPLIYKEYIKYKRVANSFFEYNEIENIDNYVFLTREGKQYNYILAERAIIKIGNQCKI 247 Query: 279 KAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 + + S H R + A G + + G ++ E Y + + Sbjct: 248 RKSIRVSPHSFRHYFAQKLVRNGTDIYRIQKLLGHASIKTTEVYLRSLN 296 >gi|253771281|ref|YP_003034141.1| putative integrase/recombinase [Clostridium botulinum D str. 1873] gi|253721433|gb|ACT33725.1| putative integrase/recombinase [Clostridium botulinum D str. 1873] Length = 272 Score = 93.6 bits (231), Expect = 4e-17, Method: Composition-based stats. Identities = 35/265 (13%), Positives = 85/265 (32%), Gaps = 21/265 (7%) Query: 85 GSLAVNSRISFESYFDQIIRKSGD--FDYRKITTKHIRSGV-ESRKHTPSSAIQFLTSMR 141 + + ++++ + I + I + + + E+ +P + + + ++R Sbjct: 15 KDKSKKTIYTYKNDIKRFIEYFEKNKLEINTINMRKFKDYLLEALLLSPKTVNRNIIAIR 74 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKTEGI--RPWTKEDMQQFKSFWS--EGSQPRLAFE 197 EY+ IN + ++ K + +G T +++ + + + Sbjct: 75 QFL------EYIHIN-NIDIKMIKIQEQGFLEDTLTNDEVIRMIKETEKMHDLRAKAFIC 127 Query: 198 FLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKL---LAMTPIGKET 254 L Y+G+R S++ + + + I K G + +P + + Sbjct: 128 TLYYTGMRVSEAISLLSEDINKDSIRI-LGKGGKYRDILIPKKLKNIWKDYMIVRENNSD 186 Query: 255 FFINNDKQKMNATQFSIWFKAKATKAGVNKSA---HGVRKFSATISADAGATAHELMATY 311 + ++ K A + K H R D G + Sbjct: 187 KLFTGREGGISRFTALNIVKKYGHMAKIKKDKVYNHAFRHLYCLNLVDRGIPLDAIKDLA 246 Query: 312 GWKTVDQAETYTKGADRIRLGIKNS 336 G K + YT+ + + L I N Sbjct: 247 GHKNISTTIIYTRKSKKQLLDIINQ 271 >gi|218442682|ref|YP_002381002.1| integrase [Cyanothece sp. PCC 7424] gi|218175040|gb|ACK73772.1| integrase domain protein SAM domain protein [Cyanothece sp. PCC 7424] Length = 319 Score = 93.6 bits (231), Expect = 4e-17, Method: Composition-based stats. Identities = 44/289 (15%), Positives = 91/289 (31%), Gaps = 29/289 (10%) Query: 83 HWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKH---IRSGVESRKHTPSSAIQFLTS 139 SL+ NS+ ++ + I + +IT + + ++ SS + L + Sbjct: 37 RARSLSSNSQKAYRRELKRFI-NWSNKPLNQITPRQIVQYKEYLQGESLAASSINRALCA 95 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR----LA 195 ++ F W + + Y NP +SV K + + ++++ + + + A Sbjct: 96 VKSFFAW-LEETYQTQNPTVSVALNKLPSLPAFDLSDKEIEALQLVLPQRPEVMRKRDAA 154 Query: 196 FEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM-------- 247 +L GLR + + ++ K + TV L + Sbjct: 155 IIAVLRHGLRACEVVALNLGDYDGVRVHVRVGKDDSGGTVPLDATARAAINAYLQQRREK 214 Query: 248 --TPIGKETFFINND---KQK--MNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISAD 299 F ++ + + K + AG+ N + H +R AT Sbjct: 215 GEKFSATAPMFASHSPVPGKPTRLGYQGLYYLIKELGSNAGIENLTPHRLRHTFATNLLL 274 Query: 300 AGATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348 G + K+ + Y K A L R + + P Sbjct: 275 KGMDSLHARTLTRHKSEVSFKRYAKRA----LSAAAERAFYEAIGEEPP 319 >gi|254192266|ref|ZP_04898755.1| phage integrase [Burkholderia pseudomallei Pasteur 52237] gi|157987461|gb|EDO95237.1| phage integrase [Burkholderia pseudomallei Pasteur 52237] Length = 411 Score = 93.6 bits (231), Expect = 4e-17, Method: Composition-based stats. Identities = 59/385 (15%), Positives = 120/385 (31%), Gaps = 66/385 (17%) Query: 1 MTPSLRLPPFVTKERTRHG---KIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGST-- 55 M RLP + G ++ +Y+R R P Y L G Sbjct: 1 MERKPRLPTGIEVRTGARGASLRVRFYYRGEECRETLKMEPTPKN--IQYADRLRGEILR 58 Query: 56 -------------PKREYINSPRKKPTT-------LKWLISEYRKSAHWGSLAVNSRISF 95 P+ + +PR + L +++ RK+ ++ ++ + Sbjct: 59 KIEMGTFNYGEYFPESKRAATPRAASPSEVTVGERLDDFMTQARKAVAKTRMSPSTLEGY 118 Query: 96 ESYFD-QIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVA 154 D ++ + G + +R + T +A L + + A+ E + Sbjct: 119 RKVVDGRLRPRWGAVRLVDVRPADLRKWISDLDVTLKTARNILGPLGSVLADALNDELID 178 Query: 155 INPCLSVERPKRKTEGIRP-------WTKEDMQQFKSFWSE---GSQPRLAFEFLLYSGL 204 NP ++ K ++ RP ++ ++++ + E G R F+F +SG+ Sbjct: 179 ENPLTKIDVRKLLSKTTRPSDYEVDPFSIDEIRAILAAADELYPGGAARNLFQFAFWSGM 238 Query: 205 RCSDSCRAGVQHLQNNIFSIKTQ-------------KTGTIITVELPDGFMKLLAMTPIG 251 R S+ H+ N ++ + K G + LP L A + Sbjct: 239 RTSELIALDWLHVDLNAGVVRVRNAQVVGTMKTTKTKAGLRDVLLLPSARAALEAQREVT 298 Query: 252 KET-----FFINNDKQKMNATQFSIWFKAKA-----TKAGVNKS-AHGVRKFSATISADA 300 + F + + + + KA V + R A++ Sbjct: 299 RGMEHNRVFVVPWHGRPWSGD---KQIRVNCWTYVLKKAEVRYRNPYQTRHTFASMLLSR 355 Query: 301 GATAHELMATYGWKTVDQ-AETYTK 324 G + G + +TY K Sbjct: 356 GENPLWVAQQMGHVDTEMITKTYGK 380 >gi|182437392|ref|YP_001825111.1| putative phage integrase [Streptomyces griseus subsp. griseus NBRC 13350] gi|178465908|dbj|BAG20428.1| putative phage integrase [Streptomyces griseus subsp. griseus NBRC 13350] Length = 423 Score = 93.6 bits (231), Expect = 4e-17, Method: Composition-based stats. Identities = 55/394 (13%), Positives = 110/394 (27%), Gaps = 73/394 (18%) Query: 24 YFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAH 83 Y + G R R + + T S LT ++ + + Sbjct: 25 YVFRPDGTRTR-KFAYGKT-REEVASQLTEMQEMTRQGIPAASSTMAFGDYLTYWLATIA 82 Query: 84 WGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSGVE------------------ 124 L + S+E I G +++ +R + Sbjct: 83 PERLKPATLNSYEGLSRLYIRPALGKKRLNRLSPADVRRFLAEFKAACLCCLRGADEERP 142 Query: 125 -------------SRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGI 171 R+ + + +R + A+R+E +A N VE P + + + Sbjct: 143 EDKRTCCAVGRCCKRRPSARTVQYIHAVLRSALQQAIREELIARNVARIVETPTVEPKEV 202 Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231 RP +++ L L+ +GLR ++ + +++ ++ Sbjct: 203 RPLDAAEVRLLLKTARPHRLYALWL-LLVSTGLRRGEALGLTWADVDLTAGTLRVRRNVQ 261 Query: 232 II----------------TVELPDGFMKLLAMTPIGKE-------------------TFF 256 I T+ LP ++ L +E F Sbjct: 262 RIRRELIFGTPKTMRSVRTISLPKSCVQALTAHRTQQEREQKVAGAKWQQTPGQPAGLVF 321 Query: 257 INNDKQKMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKT 315 + + + A V + H +R A++ G A +M T G T Sbjct: 322 TTLTGRVTDPRSLNRMLTILCRDAKVRRVRVHDLRHTCASLLLAQGVDARTIMETLGHST 381 Query: 316 VDQA-ETYTKGA-DRIRLGIKNSRRISSVVDSDD 347 + +TY +R + + D DD Sbjct: 382 ITMTLDTYAHVMGSTLRAAAEQMDDALGLEDVDD 415 >gi|289167066|ref|YP_003445333.1| site-specific recombinase, phage integrase family [Streptococcus mitis B6] gi|288906631|emb|CBJ21465.1| site-specific recombinase, phage integrase family [Streptococcus mitis B6] Length = 377 Score = 93.6 bits (231), Expect = 4e-17, Method: Composition-based stats. Identities = 40/276 (14%), Positives = 94/276 (34%), Gaps = 41/276 (14%) Query: 90 NSR-ISFESYFDQ---IIRKSGDFDYRKI--TTKHIRSGVESRKHTP---SSAIQFLTSM 140 N++ ++ + ++ G Y I +H+R V P ++ + + + Sbjct: 85 NTQDNNYNKHIKDYFSMVDNVGKLTYEDIYQFREHLRQKVAKNSDKPLSTNTINKIMILL 144 Query: 141 RVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW-SEGSQPRLAFEFL 199 + +F +R+ Y + NP +++ + ++ WT ++ Q+F + + E +L F L Sbjct: 145 KKIFDVGLRKGYYSSNPAKLIKKLPIEKTKMQFWTVKEFQKFLTLFEPEEYNIKLLFTVL 204 Query: 200 LYSGLRCSDSCRAGVQHLQ---------------NNIFSIKTQKTGTII-TVELPDGFMK 243 ++GLR ++ Q + + I T KT + + + Sbjct: 205 FFTGLRLGEALALTWQDIDFSSNTIHITKSVYVNKGVTHISTTKTKAGTRRIVINKKLSQ 264 Query: 244 LLAMTPIGKETFFINNDKQKMNATQFSI------------WFKAKATKAG-VNK-SAHGV 289 L ++ + F +K + + K H Sbjct: 265 ELQDWEKQQKHLLEQFTNNSLTLQVFQNSPITITKNAVEKQYKKILERDSTLKKIRIHDF 324 Query: 290 RKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324 R A++ + G + G ++ +TY+ Sbjct: 325 RHSHASLLINQGEDYLVVKERLGHASITTTIDTYSH 360 >gi|2668483|dbj|BAA23767.1| integrase [Pseudomonas aeruginosa] Length = 337 Score = 93.6 bits (231), Expect = 4e-17, Method: Composition-based stats. Identities = 42/306 (13%), Positives = 92/306 (30%), Gaps = 62/306 (20%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHT 129 ++ + R+ + ++ + ++ IR G + + + + + RK + Sbjct: 16 VLDQLRERIRYLHYSLRTEQAYVHCVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75 Query: 130 PSSAIQFLTSMRVLFK--WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 S+ Q L ++ + ++ + RP+ T +++ + F Sbjct: 76 VSTHRQALAALLFFYGKVLCTDLPWLQ-----EIGRPRPSRRLPVVLTPDEVVRILGFL- 129 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQH--LQNNIFSIKTQKTGTIITVELPDGFMKLL 245 EG RL + L +G+R S+ + V+ + ++ K + LP+ L Sbjct: 130 EGEH-RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSL 188 Query: 246 AMTPIGKETFFINN---------------------------------------------D 260 +++ + Sbjct: 189 REQLSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVR 248 Query: 261 KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318 + M F FK +AG+ K + H +R AT +G + G V Sbjct: 249 RHHMYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVST 308 Query: 319 AETYTK 324 YT Sbjct: 309 TMIYTH 314 >gi|314950814|ref|ZP_07853885.1| site-specific recombinase, phage integrase family [Enterococcus faecium TX0133A] gi|313596990|gb|EFR75835.1| site-specific recombinase, phage integrase family [Enterococcus faecium TX0133A] Length = 371 Score = 93.6 bits (231), Expect = 4e-17, Method: Composition-based stats. Identities = 43/303 (14%), Positives = 99/303 (32%), Gaps = 49/303 (16%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESR--- 126 L + + EY K +L N+ ++ + I G ++ +++ + + Sbjct: 61 LDFWMEEYVK----LNLKYNTYENYRFTIKNHINGYLGKKKLTDLSPALLQNFINAEFKK 116 Query: 127 ---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK-----TEGIRPWTKED 178 K T + L + + + + NP L V+ PK + + ++ + ED Sbjct: 117 GYSKKTMTITHSVLKNALNMAVY--PWGLIKQNPMLYVKIPKYEARPTTKKDLKIISLED 174 Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK---------- 228 EG + Y+G+R + C + + +I +K Sbjct: 175 FDHMLEITPEGHPFYIPLNIGFYTGMRVGEVCGLTWDDVDFSNGTITVEKQMVKNDGAWV 234 Query: 229 ------TGTIITVELPDGFMKLLAMTP--------------IGKETFFINNDKQKMNATQ 268 + + T+ + + +L I D + + + Sbjct: 235 YGTPKTSSSNRTIFIGQTLLAILKKHKKQQLENRMKYGKLYIDSNAVCTKEDGELVTPSV 294 Query: 269 FSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGAD 327 + + ++ + H +R AT+ + GA E+ G + +TY+ D Sbjct: 295 VKWNTRRISNALSLSFNFHSLRHTHATLLLENGAKMKEISERLGHSRISITMDTYSHVTD 354 Query: 328 RIR 330 ++R Sbjct: 355 KMR 357 >gi|314939813|ref|ZP_07847031.1| site-specific recombinase, phage integrase family [Enterococcus faecium TX0133a04] gi|314941456|ref|ZP_07848346.1| site-specific recombinase, phage integrase family [Enterococcus faecium TX0133C] gi|314949549|ref|ZP_07852882.1| site-specific recombinase, phage integrase family [Enterococcus faecium TX0082] gi|314992246|ref|ZP_07857685.1| site-specific recombinase, phage integrase family [Enterococcus faecium TX0133B] gi|314995374|ref|ZP_07860479.1| site-specific recombinase, phage integrase family [Enterococcus faecium TX0133a01] gi|313590420|gb|EFR69265.1| site-specific recombinase, phage integrase family [Enterococcus faecium TX0133a01] gi|313593214|gb|EFR72059.1| site-specific recombinase, phage integrase family [Enterococcus faecium TX0133B] gi|313599741|gb|EFR78584.1| site-specific recombinase, phage integrase family [Enterococcus faecium TX0133C] gi|313640909|gb|EFS05489.1| site-specific recombinase, phage integrase family [Enterococcus faecium TX0133a04] gi|313644077|gb|EFS08657.1| site-specific recombinase, phage integrase family [Enterococcus faecium TX0082] Length = 372 Score = 93.6 bits (231), Expect = 4e-17, Method: Composition-based stats. Identities = 43/303 (14%), Positives = 99/303 (32%), Gaps = 49/303 (16%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESR--- 126 L + + EY K +L N+ ++ + I G ++ +++ + + Sbjct: 62 LDFWMEEYVK----LNLKYNTYENYRFTIKNHINGYLGKKKLTDLSPALLQNFINAEFKK 117 Query: 127 ---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK-----TEGIRPWTKED 178 K T + L + + + + NP L V+ PK + + ++ + ED Sbjct: 118 GYSKKTMTITHSVLKNALNMAVY--PWGLIKQNPMLYVKIPKYEARPTTKKDLKIISLED 175 Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK---------- 228 EG + Y+G+R + C + + +I +K Sbjct: 176 FDHMLEITPEGHPFYIPLNIGFYTGMRVGEVCGLTWDDVDFSNGTITVEKQMVKNDGAWV 235 Query: 229 ------TGTIITVELPDGFMKLLAMTP--------------IGKETFFINNDKQKMNATQ 268 + + T+ + + +L I D + + + Sbjct: 236 YGTPKTSSSNRTIFIGQTLLAILKKHKKQQLENRMKYGKLYIDSNAVCTKEDGELVTPSV 295 Query: 269 FSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGAD 327 + + ++ + H +R AT+ + GA E+ G + +TY+ D Sbjct: 296 VKWNTRRISNALSLSFNFHSLRHTHATLLLENGAKMKEISERLGHSRISITMDTYSHVTD 355 Query: 328 RIR 330 ++R Sbjct: 356 KMR 358 >gi|258616081|ref|ZP_05713851.1| phage integrase family site specific recombinase [Enterococcus faecium DO] gi|293563861|ref|ZP_06678293.1| phage integrase family protein [Enterococcus faecium E1162] gi|294623266|ref|ZP_06702131.1| phage integrase family protein [Enterococcus faecium U0317] gi|291597294|gb|EFF28480.1| phage integrase family protein [Enterococcus faecium U0317] gi|291604190|gb|EFF33692.1| phage integrase family protein [Enterococcus faecium E1162] Length = 361 Score = 93.6 bits (231), Expect = 4e-17, Method: Composition-based stats. Identities = 43/303 (14%), Positives = 99/303 (32%), Gaps = 49/303 (16%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESR--- 126 L + + EY K +L N+ ++ + I G ++ +++ + + Sbjct: 51 LDFWMEEYVK----LNLKYNTYENYRFTIKNHINGYLGKKKLTDLSPALLQNFINAEFKK 106 Query: 127 ---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK-----TEGIRPWTKED 178 K T + L + + + + NP L V+ PK + + ++ + ED Sbjct: 107 GYSKKTMTITHSVLKNALNMAVY--PWGLIKQNPMLYVKIPKYEARPTTKKDLKIISLED 164 Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK---------- 228 EG + Y+G+R + C + + +I +K Sbjct: 165 FDHMLEITPEGHPFYIPLNIGFYTGMRVGEVCGLTWDDVDFSNGTITVEKQMVKNDGAWV 224 Query: 229 ------TGTIITVELPDGFMKLLAMTP--------------IGKETFFINNDKQKMNATQ 268 + + T+ + + +L I D + + + Sbjct: 225 YGTPKTSSSNRTIFIGQTLLAILKKHKKQQLENRMKYGKLYIDSNAVCTKEDGELVTPSV 284 Query: 269 FSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGAD 327 + + ++ + H +R AT+ + GA E+ G + +TY+ D Sbjct: 285 VKWNTRRISNALSLSFNFHSLRHTHATLLLENGAKMKEISERLGHSRISITMDTYSHVTD 344 Query: 328 RIR 330 ++R Sbjct: 345 KMR 347 >gi|257878400|ref|ZP_05658053.1| phage integrase [Enterococcus faecium 1,230,933] gi|257882818|ref|ZP_05662471.1| phage integrase [Enterococcus faecium 1,231,502] gi|257889401|ref|ZP_05669054.1| phage integrase [Enterococcus faecium 1,231,410] gi|257894414|ref|ZP_05674067.1| phage integrase [Enterococcus faecium 1,231,408] gi|257812628|gb|EEV41386.1| phage integrase [Enterococcus faecium 1,230,933] gi|257818476|gb|EEV45804.1| phage integrase [Enterococcus faecium 1,231,502] gi|257825761|gb|EEV52387.1| phage integrase [Enterococcus faecium 1,231,410] gi|257830793|gb|EEV57400.1| phage integrase [Enterococcus faecium 1,231,408] Length = 351 Score = 93.6 bits (231), Expect = 4e-17, Method: Composition-based stats. Identities = 43/303 (14%), Positives = 99/303 (32%), Gaps = 49/303 (16%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESR--- 126 L + + EY K +L N+ ++ + I G ++ +++ + + Sbjct: 41 LDFWMEEYVK----LNLKYNTYENYRFTIKNHINGYLGKKKLTDLSPALLQNFINAEFKK 96 Query: 127 ---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK-----TEGIRPWTKED 178 K T + L + + + + NP L V+ PK + + ++ + ED Sbjct: 97 GYSKKTMTITHSVLKNALNMAVY--PWGLIKQNPMLYVKIPKYEARPTTKKDLKIISLED 154 Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK---------- 228 EG + Y+G+R + C + + +I +K Sbjct: 155 FDHMLEITPEGHPFYIPLNIGFYTGMRVGEVCGLTWDDVDFSNGTITVEKQMVKNDGAWV 214 Query: 229 ------TGTIITVELPDGFMKLLAMTP--------------IGKETFFINNDKQKMNATQ 268 + + T+ + + +L I D + + + Sbjct: 215 YGTPKTSSSNRTIFIGQTLLAILKKHKKQQLENRMKYGKLYIDSNAVCTKEDGELVTPSV 274 Query: 269 FSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGAD 327 + + ++ + H +R AT+ + GA E+ G + +TY+ D Sbjct: 275 VKWNTRRISNALSLSFNFHSLRHTHATLLLENGAKMKEISERLGHSRISITMDTYSHVTD 334 Query: 328 RIR 330 ++R Sbjct: 335 KMR 337 >gi|254469282|ref|ZP_05082687.1| phage integrase [Pseudovibrio sp. JE062] gi|211961117|gb|EEA96312.1| phage integrase [Pseudovibrio sp. JE062] Length = 416 Score = 93.6 bits (231), Expect = 4e-17, Method: Composition-based stats. Identities = 58/356 (16%), Positives = 112/356 (31%), Gaps = 48/356 (13%) Query: 10 FVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPT 69 F+ + RT G+ R GR L ++ + + R P Sbjct: 41 FIVQYRTHEGRSR---RMSLGRYGELTPDQARDLATNVLATVRNGDDPLLKRENKRAAP- 96 Query: 70 TLKWLISEYR-KSAHWGSLAVNSRISFESYFDQ-IIRKSGDFDYRKITTKHIRSGVESRK 127 T+ L+ Y K + + E + + + G + + I S + Sbjct: 97 TVNVLLDIYMSKHVQVHN-KPKTMKDIERLLKRCVRSRLGLMKLNSVRRQDIAKLHHSLR 155 Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVA--INPCLSVERPKRKTEGIRPWTKEDMQQFKSF 185 TP A Q L + F A NP V+R K + E R ++E++Q+ Sbjct: 156 ATPRQANQVLAVLSKAFNLAEVWGLRPEHSNPVRLVKRYK-ENERDRFLSEEELQRLGRT 214 Query: 186 WSEGSQPRLAFEF-------------------------------LLYSGLRCSDSCRAGV 214 Q L + LLY+G R S+ Sbjct: 215 LELADQEGLPWIIKAGKRSAKHLPKDVAKRKTPVNPRALCCLRLLLYTGARLSEIATLKW 274 Query: 215 QHLQNNI--FSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFF----INNDKQKMNATQ 268 +H+ + F++ ++K + +++L+ P + + + Q ++ Sbjct: 275 KHIDFELATFALPSRKGDERKPHPVSSSAIEILSEFPRVDGSPYVLPGCKDPTQPISIEV 334 Query: 269 FSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 ++ A + + H +R T +A AG+ A + + V Y Sbjct: 335 IENAWQRIRIHANIPDVRIHDLRHTVGTFAAQAGSNAFLISHLLRHRNVTITNRYV 390 >gi|163742251|ref|ZP_02149639.1| site-specific tyrosine recombinase XerC [Phaeobacter gallaeciensis 2.10] gi|161384581|gb|EDQ08962.1| site-specific tyrosine recombinase XerC [Phaeobacter gallaeciensis 2.10] Length = 311 Score = 93.6 bits (231), Expect = 4e-17, Method: Composition-based stats. Identities = 40/236 (16%), Positives = 78/236 (33%), Gaps = 19/236 (8%) Query: 107 GDFDYRKITTKHIRSGVESRKHTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVER 163 G +I+T +R+ + + + T + A + L++++ + W ++ LS Sbjct: 58 GLGALAEISTGDMRAWMAATRATGTGARSLARKLSAVKSFYTWLAERQGFEPTAVLSARS 117 Query: 164 PKRKTEGIRPWTKEDMQQFKSFWS-------EGSQPRLAFEFLLYSGLRCSDSCRAGVQH 216 PK + + RP ++ + ++ L GLR S++ Sbjct: 118 PKFQKKLPRPLAEDAARAVIETVEFQSTTDWVAARDVAVVTLLYGCGLRISEALGLTGAD 177 Query: 217 LQNNIFSIKTQKTGTIITVELP-------DGFMKLLAMTPIGKETFFINNDKQKMNATQF 269 T K G V + D +++L F +NA Sbjct: 178 APLPAVLRITGKGGKERIVPVLSAARAAVDRYLRLCPHPQERAAPLFRGVRGGALNARLI 237 Query: 270 SIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYT 323 + G+ SA H +R AT +AG + G ++ + YT Sbjct: 238 RSAMAQARAQLGLPASATPHALRHSFATHLLEAGGDLRAIQELLGHASLSTTQAYT 293 >gi|153838484|ref|ZP_01991151.1| integrase [Vibrio parahaemolyticus AQ3810] gi|149748107|gb|EDM58966.1| integrase [Vibrio parahaemolyticus AQ3810] Length = 392 Score = 93.6 bits (231), Expect = 4e-17, Method: Composition-based stats. Identities = 36/207 (17%), Positives = 65/207 (31%), Gaps = 17/207 (8%) Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFL 199 +R A R+ + NP V K KT T +++ + AF F Sbjct: 175 VRAAINEAHREGIIRDNPLSQVTSIKAKTTKRVYLTLDEVNALAHTECRYPVLKRAFLFS 234 Query: 200 LYSGLRCSDSCRAGVQHLQN----NIFSIKTQK-----TGTIITVELPDGFMKLLAMTPI 250 +G+R D R ++ K ++ +++P LL Sbjct: 235 CATGMRWCDIHRLTWSEVETFNNHKRIIFDQAKLSQGDAKSLQYLDIPKSAESLLGSPKA 294 Query: 251 GKETFFINNDKQKMNATQFSIW-FKAKATKAGVNK--SAHGVRKFSATISADAGATAHEL 307 E F + + + + A AG++K + H R A I G + + Sbjct: 295 SHERVF-----KGLKYSSYINVELLRWALAAGISKHVTFHAGRHTFAVIQLSRGIDIYAV 349 Query: 308 MATYGWKTVDQAETYTKGADRIRLGIK 334 G + E Y ++ R+ Sbjct: 350 SKLLGHSELKTTEIYADIIEQRRMEAM 376 >gi|69246683|ref|ZP_00604073.1| Phage integrase [Enterococcus faecium DO] gi|68195157|gb|EAN09615.1| Phage integrase [Enterococcus faecium DO] Length = 375 Score = 93.6 bits (231), Expect = 4e-17, Method: Composition-based stats. Identities = 43/303 (14%), Positives = 99/303 (32%), Gaps = 49/303 (16%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYF-DQIIRKSGDFDYRKITTKHIRSGVESR--- 126 L + + EY K +L N+ ++ + I G ++ +++ + + Sbjct: 65 LDFWMEEYVK----LNLKYNTYENYRFTIKNHINGYLGKKKLTDLSPALLQNFINAEFKK 120 Query: 127 ---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRK-----TEGIRPWTKED 178 K T + L + + + + NP L V+ PK + + ++ + ED Sbjct: 121 GYSKKTMTITHSVLKNALNMAVY--PWGLIKQNPMLYVKIPKYEARPTTKKDLKIISLED 178 Query: 179 MQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQK---------- 228 EG + Y+G+R + C + + +I +K Sbjct: 179 FDHMLEITPEGHPFYIPLNIGFYTGMRVGEVCGLTWDDVDFSNGTITVEKQMVKNDGAWV 238 Query: 229 ------TGTIITVELPDGFMKLLAMTP--------------IGKETFFINNDKQKMNATQ 268 + + T+ + + +L I D + + + Sbjct: 239 YGTPKTSSSNRTIFIGQTLLAILKKHKKQQLENRMKYGKLYIDSNAVCTKEDGELVTPSV 298 Query: 269 FSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGAD 327 + + ++ + H +R AT+ + GA E+ G + +TY+ D Sbjct: 299 VKWNTRRISNALSLSFNFHSLRHTHATLLLENGAKMKEISERLGHSRISITMDTYSHVTD 358 Query: 328 RIR 330 ++R Sbjct: 359 KMR 361 >gi|318603813|emb|CBY25311.1| integrase [Yersinia enterocolitica subsp. palearctica Y11] Length = 284 Score = 93.6 bits (231), Expect = 4e-17, Method: Composition-based stats. Identities = 41/273 (15%), Positives = 88/273 (32%), Gaps = 17/273 (6%) Query: 56 PKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT 115 ++ + R L L+ + H +L + + + + + GD ++T Sbjct: 4 ANKKEWSDKRLDRRLLSDLVETWWL-YHGQNLKNGTIE--KRHLMKTLTALGDKAVSQLT 60 Query: 116 TKHI---RSGVESRKHTPSSAIQFLTSMRVLFKWAVR-QEYVAINPCLSVERPKRKTEGI 171 + + RS + + ++ + L + +F ++ +E+ NP + K G+ Sbjct: 61 KRELMEHRSQRLADGISAATINRDLYRLSGMFSALIKIEEFSGQNPLHGLPPLAEKNPGM 120 Query: 172 RPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGT 231 E++ + + S RL L +G R + + NN + K G Sbjct: 121 TFLDAEEINRLLAVLS--GDERLIALLCLSTGGRWGEVSTLTAAQVVNNRVTFLETKNGK 178 Query: 232 IITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRK 291 T+ + K + K F + + F + ++ H +R Sbjct: 179 KRTIPISAELEKEVKTNASRK--LFKVDYGK------FCETLRMVKPDLPRGQATHVLRH 230 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTK 324 A+ G L G + Q Y Sbjct: 231 TFASHFMMNGGNIIALQQILGHANIQQTMAYAH 263 >gi|51596109|ref|YP_070300.1| integrase [Yersinia pseudotuberculosis IP 32953] gi|51589391|emb|CAH21013.1| putative integrase [Yersinia pseudotuberculosis IP 32953] Length = 351 Score = 93.6 bits (231), Expect = 4e-17, Method: Composition-based stats. Identities = 46/329 (13%), Positives = 91/329 (27%), Gaps = 32/329 (9%) Query: 18 HGKII--YYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLI 75 +GK + +Y +R+R + + L LK L+ Sbjct: 8 NGKWVCDFYSDGRDSKRVRKTFVTRGEAMRFEREQLAQRGDLDIDYTPAETAAQRLKTLV 67 Query: 76 SEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESR-----KHTP 130 ++ +++ + + + GD + + R P Sbjct: 68 GQWY---ELHGRSLSDGKARLDKLNILCDNLGDPAVADFDREVFAKYRKQRLAGEFSRKP 124 Query: 131 ----------SSAIQFLTSMRVLFKWAVRQE-YVAINPCLSVERPKRKTEGIRPWTKEDM 179 ++ + +R +F R + NP V + + ++D+ Sbjct: 125 KHGIVKPPKEATVNREHAYLRAVFNELKRLGHWNHANPLDGVRLFRESENELTFLYEDDI 184 Query: 180 QQFKSFWSEGSQPRL--AFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVEL 237 ++ S L L +G R S++ + + N + K+ TV + Sbjct: 185 KRLLHECDSSSNKDLGIIVRICLATGARWSEAEQLRQAQVMPNKITYINTKSKKNRTVPI 244 Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATIS 297 KL+ P K F N F + H +R A+ Sbjct: 245 SAELHKLI---PKMKGRLFANAY------DAFGQAIDRAKLVLPTGQLTHVLRHTFASHF 295 Query: 298 ADAGATAHELMATYGWKTVDQAETYTKGA 326 G L G T+ Y+ A Sbjct: 296 MMNGGNILVLQQILGHSTIQMTMRYSHFA 324 >gi|327402450|ref|YP_004343288.1| integrase family protein [Fluviicola taffensis DSM 16823] gi|327317958|gb|AEA42450.1| integrase family protein [Fluviicola taffensis DSM 16823] Length = 404 Score = 93.6 bits (231), Expect = 4e-17, Method: Composition-based stats. Identities = 46/291 (15%), Positives = 106/291 (36%), Gaps = 43/291 (14%) Query: 79 RKSAHWGSLAVNSRISF------------ESYFDQIIRKSGDFDYRKITTKHIRSG---- 122 +KS + A + S+ + +++ + + IT K + + Sbjct: 103 KKSMDFFEFANSVTESYLTDSKIGTYSKTKGIIEKLKKYDSSLSFIDITPKFLTAYEAYL 162 Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVA--INPCLSVERPKRKTEGIRPWTKEDMQ 180 ++ ++ L +R +F A +Q+ + +P L + K + T+++++ Sbjct: 163 RTKLNNSTNTIHTNLKFIRTVFNKAFQQDIIELSSSPFLKFKM-KTEKVQRDYLTEDELK 221 Query: 181 QFKSFWSEG-----SQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITV 235 F ++G + GLR SD + H ++ + +KTG+ I++ Sbjct: 222 IFAEVDTQGNLKLELHQDMFVFAAYSGGLRISDILQLQWIHFDDSHINFTIKKTGSQISI 281 Query: 236 ELPDGFMKLLAM---TPIGK----------ETFFINNDKQKMNATQFSIWF----KAKAT 278 ++P+ + ++ T K +T+ + Q + + K A Sbjct: 282 KIPNIALNIIEKYNLTQSEKTSYIFPMLPEDTYLRDAIGQDKAISSATAVINKNLKTLAK 341 Query: 279 KAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 A + K S H R AT + G + ++ G + + + Y K + Sbjct: 342 LAKIEKNISFHISRHTWATRALRKGMSIDKVSKLMGHSAIKETQIYAKIVN 392 >gi|301059533|ref|ZP_07200445.1| site-specific recombinase, phage integrase family [delta proteobacterium NaphS2] gi|300446298|gb|EFK10151.1| site-specific recombinase, phage integrase family [delta proteobacterium NaphS2] Length = 340 Score = 93.6 bits (231), Expect = 4e-17, Method: Composition-based stats. Identities = 53/297 (17%), Positives = 97/297 (32%), Gaps = 31/297 (10%) Query: 50 ALTGSTPKREYINSPR------KKPTT--LKWLISEYRKSAHWGSLAVNSRISFESYFDQ 101 AL +R +N+P ++P + L+ I +Y + N+ Sbjct: 34 ALLAEAERRTQVNAPSLGLKELEEPPSDYLEETILKYLNYCKKRKMRTNTIRQKYFVLSN 93 Query: 102 IIRKSGDFDYRKITTKHIRSGVESRKHTPSSA-IQFLTSMRVLFKWAVRQEYVAINPCLS 160 ++ GD I I + +E R + S + L +R +F W +E + NP Sbjct: 94 FVKSIGDKPVELIRKSDIEAYLELRIDSGKSTFNRDLRDIRAMFNWYYGREGIFHNPAND 153 Query: 161 VERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAF-EFLLYSGLRCSDSCRAGVQ-HLQ 218 +E+ E D++ K ++ + F E + Y+GLR ++ R + Sbjct: 154 IEKIGEDVELRYVPPFSDIKAVK---LVATRDEVDFLETIFYAGLRRIEAIRLLWSRDVD 210 Query: 219 NN----IFSIKTQKTGTIITVE------LPDGFMKLLAMTPIGKETFFINNDKQKMNATQ 268 I + +K GT+ L + F + + Sbjct: 211 FGSRTLISWTRKRKNGTLTPKPKAMTKILYMALKNRYERRNRLDDRVF------QFSVEY 264 Query: 269 FSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 + K KAGV H +R A+I + G + + TY Sbjct: 265 LNDMMKCLCEKAGVQHFGLHALRHLGASILLSENVPLPAVQEYLGHERITTTNTYAH 321 >gi|157159384|ref|YP_001462867.1| phage integrase family site specific recombinase [Escherichia coli E24377A] gi|157081414|gb|ABV21122.1| site-specific recombinase, phage integrase family [Escherichia coli E24377A] Length = 426 Score = 93.6 bits (231), Expect = 4e-17, Method: Composition-based stats. Identities = 45/317 (14%), Positives = 97/317 (30%), Gaps = 64/317 (20%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRK-ITTKHIRSGVESR-- 126 T+K L ++ +A S ++ + I+ G+ + I + + + Sbjct: 80 TIKELAEKFLALKE-TEVAKTSLNTYRAVIKNILSIIGEKNLASSINKEKLLEVRKELLT 138 Query: 127 --------------KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR 172 + + ++T++ +F++ V Y+A NP + K Sbjct: 139 GYQIPKSNYIVTQPGRSAVTVNNYMTNLNAVFQFGVDNGYLADNPFKGISPLKESRTIPD 198 Query: 173 PWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIK----- 225 P ++E+ + Q + + +Y+G+R + C G + + N I+ Sbjct: 199 PLSREEFIRLIDAC-RNQQAKNLWCVSVYTGVRPGELCALGWEDIDLKNGTMMIRRNLAK 257 Query: 226 --------TQKTGTIITV--ELPDGFMKLLAMTPIGKETFF------------------- 256 T +I + D + +T + KE Sbjct: 258 DRFTVPKTQAGTNRVIHLIKPAIDALRSQMTLTRLSKEHIIDVHLREYGRTEKQKCTFVF 317 Query: 257 -------INNDKQKMNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELM 308 + N + A +AG+ ++ ++ R A S AGA + Sbjct: 318 QPEVSARVKNYGDHFTVDSIRQMWDAAIKRAGLRHRKSYQSRHTYACWSLTAGANPAFIA 377 Query: 309 ATYGWKTVDQA-ETYTK 324 G + Y K Sbjct: 378 NQMGHADAQMVFKVYGK 394 >gi|160935791|ref|ZP_02083166.1| hypothetical protein CLOBOL_00681 [Clostridium bolteae ATCC BAA-613] gi|158441535|gb|EDP19245.1| hypothetical protein CLOBOL_00681 [Clostridium bolteae ATCC BAA-613] Length = 392 Score = 93.6 bits (231), Expect = 4e-17, Method: Composition-based stats. Identities = 53/357 (14%), Positives = 104/357 (29%), Gaps = 61/357 (17%) Query: 24 YFRKGHGRRIRLPYPHESTFIPAYMSALTGST----PKREYINSPRKKPTT------LKW 73 R +RL +S Y S ++ K + I + +KK T + Sbjct: 14 RQRSDGRYEVRLYTGTDSNGKKTYKSIYGRTSKELKEKLKEIATEQKKNRTPAANINFRD 73 Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPS-- 131 + + + L S E ++++ G I+T I+ + T + Sbjct: 74 YALHWMRLYKYPVLKPVSYDRLEQTYNKVCEYLGWIQMGNISTDDIQEMINDLARTKAYS 133 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK-----RKTEGIRPWTKEDMQQFKSFW 186 + + ++ +F A + + NPC +V P KT+ +E+ + +F Sbjct: 134 TVKKHHEFVKNVFSHAYKTGELDFNPCEAVALPIERNMTVKTKPAEILLEEETEAMYAFN 193 Query: 187 SEGSQPR-------LAFEFLLYSGLRCSDSCRAGVQHLQ-------------------NN 220 + + R A +L +G R + + + Sbjct: 194 EKIKKSRNQFFKQMPALLLMLNTGWRVGELLALEWTDIDFKKRTARINKTLAKAKTRNDA 253 Query: 221 IFSIKTQKT----------GTIIT------VELPDGFMKLLAMTPIGKETFFINNDKQKM 264 SI KT G +T V L + I D + Sbjct: 254 GESISRHKTTFPEPTKTKAGERLTPLNDMAVSLLKQIKEYNQRMGIQSNYVVCTKDGGYV 313 Query: 265 NATQFSIWFKAK--ATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319 + FK+ A + + H +R A+ G + G ++ Sbjct: 314 SERNLLRTFKSVMGIIGAEKDYTIHSLRHTYASRLLKRGVDVSVVSKLLGHSDINTT 370 >gi|85713711|ref|ZP_01044701.1| phage integrase [Nitrobacter sp. Nb-311A] gi|85699615|gb|EAQ37482.1| phage integrase [Nitrobacter sp. Nb-311A] Length = 322 Score = 93.6 bits (231), Expect = 4e-17, Method: Composition-based stats. Identities = 44/307 (14%), Positives = 95/307 (30%), Gaps = 34/307 (11%) Query: 58 REYINSPRKKPTTLKWLISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD-------- 108 E + P + + I+ + L+ + ++ Q + G Sbjct: 6 AEPLPDPACAASDVGQQIARWLTHLRAERRLSAKTLEAYARDVRQCLMFLGQHWGELVTL 65 Query: 109 FDYRKITTKHIRSGVESRKH---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPK 165 + + IR+ + +R+ S ++ L +R ++ R+ + ++ PK Sbjct: 66 ERFAALEPGDIRAFMAARRAEDIGGRSLMRSLAGLRSFARFLEREGLGKVGALGAIRAPK 125 Query: 166 RKTEGIRPWTKEDMQQFKSFWSEGSQPR---------LAFEFLLYSGLRCSDSCRAGVQH 216 +P ++F + R L SGLR S++ + Sbjct: 126 VGKSLPKPIQMSAAKRFADASERAGEDREPWIWARDAAVMALLYGSGLRISEALGLKRRD 185 Query: 217 L----QNNIFSIKTQKTGTIITVELPDGFM---KLLAMTP---IGKETFFINNDKQKMNA 266 + ++ + + T + L + + +AM P F+ + A Sbjct: 186 VPLPGAGDVLVVTGKGNKTRMVPVLHNVLALIHEYVAMCPHSLSPDGPIFVGARGGPLRA 245 Query: 267 TQFSIWFKAKATKAGVN--KSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 + G+ + H +R AT G + G ++ + YT Sbjct: 246 RIIQLVMARMRGALGLPDSATPHALRHSFATHLLSRGGDLRAIQELLGHASLSTTQIYT- 304 Query: 325 GADRIRL 331 G D RL Sbjct: 305 GIDSERL 311 >gi|331697265|ref|YP_004333504.1| integrase family protein [Pseudonocardia dioxanivorans CB1190] gi|326951954|gb|AEA25651.1| integrase family protein [Pseudonocardia dioxanivorans CB1190] Length = 573 Score = 93.6 bits (231), Expect = 4e-17, Method: Composition-based stats. Identities = 47/302 (15%), Positives = 95/302 (31%), Gaps = 26/302 (8%) Query: 52 TGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDY 111 + E+ P TT++ + + + G++ E Sbjct: 163 RADVRELEWARVPTAIATTMRDYLQQITTTLRPGTVKNAELTLREFALLVTAEDPETRCV 222 Query: 112 RKITTKHIRSGVESRKHTPSS---------AIQFLTSMRVLFKWAVRQEYVAINPCLSVE 162 + KHI P++ L+ +R F+ + P + Sbjct: 223 ANLRRKHIERYKTWLLERPAARGGPLHRHTVRDRLSKLRGFFRRLDEWDTEDR-PARQLV 281 Query: 163 RPKRKTEGIRPWTKEDMQQFKSFWSEGSQ------PRLAFEFLLYSGLRCSDSCRAGVQH 216 P + + ++ RLA E L +G+R S+ + Sbjct: 282 FDSDFPIADEPLPRFLDDAAAAKLLAAARNDPDPFARLAIEILARTGMRRSEMLGLTIDA 341 Query: 217 L----QNNIFSIKTQKTGTIITVELPDGFMKL----LAMTPIG-KETFFINNDKQKMNAT 267 + + K T V L L LA P G + + + +NA+ Sbjct: 342 VVQIGSAYWLRVPVGKMHTDRYVPLHPQLKALIDDWLARRPEGLRSDLLFTDHGRPVNAS 401 Query: 268 QFSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGA 326 + + A +AG+ + + H +R AT + + G + + A G +++ Y + A Sbjct: 402 RIEAAVRNAADRAGLGRVTPHQLRHTLATQAINRGMSLEAIAALLGHRSLSMTRVYARIA 461 Query: 327 DR 328 +R Sbjct: 462 NR 463 >gi|260361955|ref|ZP_05774960.1| phage integrase family protein [Vibrio parahaemolyticus K5030] gi|308114176|gb|EFO51716.1| phage integrase family protein [Vibrio parahaemolyticus K5030] Length = 394 Score = 93.6 bits (231), Expect = 4e-17, Method: Composition-based stats. Identities = 36/220 (16%), Positives = 69/220 (31%), Gaps = 17/220 (7%) Query: 127 KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW 186 + ++ + +R A R+ + NP V K KT T +++ Sbjct: 164 ALSRNTQSSYFNKVRAAINEAHREGIIRDNPLAQVTSIKAKTTKRVYLTLDEVNALAHTE 223 Query: 187 SEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN----NIFSIKTQK-----TGTIITVEL 237 + AF F +G+R D R ++ K ++ +++ Sbjct: 224 CRYPVLKSAFLFSCATGMRWCDIHRLTWSEIETFNNHKRIIFDQVKLSHGDAKSLQYLDI 283 Query: 238 PDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIW-FKAKATKAGVNK--SAHGVRKFSA 294 P LL E F + + + + A AG++K + H R A Sbjct: 284 PKSAESLLGSPKASHERVF-----KGLKYSSYINVELLRWALAAGISKHVTFHAGRHTFA 338 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIRLGIK 334 I G + + G + E Y ++ R+ Sbjct: 339 VIQLSRGIDIYAVSKLLGHSELKTTEIYADIIEQRRMEAM 378 >gi|237710496|ref|ZP_04540977.1| integrase [Bacteroides sp. 9_1_42FAA] gi|229455218|gb|EEO60939.1| integrase [Bacteroides sp. 9_1_42FAA] Length = 406 Score = 93.6 bits (231), Expect = 4e-17, Method: Composition-based stats. Identities = 44/267 (16%), Positives = 93/267 (34%), Gaps = 28/267 (10%) Query: 78 YRKSA-HWGSLAVNSRISFESYFDQIIRKSGDFDYRKIT---TKHIRSGVESRKHTPSSA 133 + KSA +++ + + + D++ +T + + + + ++ Sbjct: 111 FAKSAIDNSDKKQSTKDNLHTTLAVLHDFRSGLDFKDLTYTFLRDFEQYLREKGNAVNTI 170 Query: 134 IQFLTSMRVLFKWAVRQEYVAIN--PCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191 + + +R L A+ Q Y+ + P + K++ +++++ ++ E Sbjct: 171 AKHMRQLRTLVNEAINQGYMHADAYPFRKYK-IKQEKGRHEFLIPDELKKLETVEVEEES 229 Query: 192 PR---LAFEFLLYSGLRCSDSCRAGVQHLQN----NIFSIKTQKTGTIITVELP-----D 239 R AF F Y+GLR SD C+ ++ K+ KTG I + L Sbjct: 230 MRHVLDAFLFCCYTGLRYSDFCQLTPENFIRINGKRWLYFKSVKTGVEIRLPLHLLFESR 289 Query: 240 GFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATIS 297 L IG ++ + + A G+ K H R AT+ Sbjct: 290 ALGSLDRYPDIGSLAALP-------CNSEVNRQLRKLAGLCGIKKRITYHVSRHTCATLL 342 Query: 298 ADAGATAHELMATYGWKTVDQAETYTK 324 G + G +V + Y++ Sbjct: 343 IHQGVAITTVQKLLGHTSVKTTQIYSE 369 >gi|227461186|gb|ACP39540.1| putative integron integrase [uncultured microorganism] Length = 318 Score = 93.6 bits (231), Expect = 4e-17, Method: Composition-based stats. Identities = 43/304 (14%), Positives = 94/304 (30%), Gaps = 58/304 (19%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSA 133 L+ + R+ +V + ++ + + I +G R + + + + + + A Sbjct: 19 LLEQVRQRLRVKHYSVRTEQAYVGWIRRFILANGKRHPRDMGEREVEAFLTVLATKGNVA 78 Query: 134 ----IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 Q L+++ L++ + E +V R KR ++E++ + + Sbjct: 79 AGTQNQALSALLFLYREVPKLELP---WMENVVRAKRPRRIPAVLSREEVTRLLAALE-- 133 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHL--QNNIFSIKTQKTGTIITVELPDGFMKLLAM 247 L L +G+R + R ++ + ++ K G V LP + L Sbjct: 134 GPAWLMAALLYGTGMRLMECIRLRIKDVDFDRGEIVVRNGKGGKDRRVPLPLRLRESLRA 193 Query: 248 TP----------------------------------IGKETFFIN-----------NDKQ 262 G + F + + Sbjct: 194 AIEHACLLHASDLADGLGEAWLPHALARKYPNAARETGWQYVFPSPQRSVDPRSGKTRRH 253 Query: 263 KMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAE 320 ++ + ++ A ++K A H +R AT +AG + G K V Sbjct: 254 HVDDSVLQRAVRSARKLAMIDKPATCHTLRHSFATHLLEAGHDIRTVQELLGHKDVATTM 313 Query: 321 TYTK 324 YT Sbjct: 314 IYTH 317 >gi|169830694|ref|YP_001716676.1| phage integrase family protein [Candidatus Desulforudis audaxviator MP104C] gi|169637538|gb|ACA59044.1| phage integrase family protein [Candidatus Desulforudis audaxviator MP104C] Length = 390 Score = 93.6 bits (231), Expect = 4e-17, Method: Composition-based stats. Identities = 47/295 (15%), Positives = 97/295 (32%), Gaps = 29/295 (9%) Query: 70 TLKWLISEYRKSAH-WGSLAVNSRISFE---SYFDQIIRKSGDFDYRKITTK---HIRSG 122 T + I Y + +A + ++ F + + G + R+ITT G Sbjct: 2 TFEEAIEAYFEVGVVLRGMAAGTVEAYRCDFRDFSRFLESQGVGEVREITTAVVNTYLVG 61 Query: 123 VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP-KRKTEGIRPWTKEDMQQ 181 + R + S+ + ++ L + V+Q +V NP V K +T + ++ Sbjct: 62 LRKRGLSLSTVHRRKNALSSLLGFCVQQGWVDNNPLRKVILQTKPRTVRNVVLSDMAVRT 121 Query: 182 FKS-----FWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKT-------QKT 229 F +G L+++GLRCS+ A H+ N + +K Sbjct: 122 FLQSDVTYRSVDGLTVTAIKMLLVFTGLRCSEIVSADWAHVNLNSGLLTVFNSKNTARKG 181 Query: 230 ---GTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV---- 282 G + L ++ L P + ++ + + + Sbjct: 182 LPEGKDRDIPLCQTVIQALNALPYRQGPLLQTRGGLRLGVDALREIVARLSQASRLEYDH 241 Query: 283 -NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG-ADRIRLGIKN 335 + H R A+ G + ++ G K + Y +R+R ++ Sbjct: 242 RPLTPHCFRHNLASQLVSRGYSEADVATLLGHKPGTVTQAYIHSTIERLREAVQG 296 >gi|322378156|ref|ZP_08052641.1| prophage L54a, integrase [Streptococcus sp. M334] gi|321280886|gb|EFX57901.1| prophage L54a, integrase [Streptococcus sp. M334] Length = 379 Score = 93.6 bits (231), Expect = 4e-17, Method: Composition-based stats. Identities = 59/359 (16%), Positives = 125/359 (34%), Gaps = 47/359 (13%) Query: 18 HGKIIYY-----FRKGHGRRIRLPYPHES--TFIPAYMSALTGSTPKREYINSPRK--KP 68 +GK YY + +++ + ++ A M K+E I + K Sbjct: 8 NGKYRYYEKYFDLEESKWKQVSITLTSKTRQAQKQARMLLEEKIENKKENIEKEKTEVKK 67 Query: 69 TTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH 128 T+K + EY K L ++ S + IRK D+ +T++ +++ + Sbjct: 68 ITVKEVYEEYLKIRE-SELKRSTFKSQKYTIIGEIRKLEDYLLVNVTSRIVQNILLELPC 126 Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG-------IRPWTKEDMQQ 181 + + + FK+ + Y++ NP +V PKRK + T+ ++ Q Sbjct: 127 SAEHRKNKKVLLNLFFKYCLNVGYISENPIDNVVLPKRKKNLKKVRKKQNKYLTRVEVVQ 186 Query: 182 FKSFWSE---GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIK----TQKTGTI 232 + +F + + RL EF+ +GLR + ++ + N +K T + Sbjct: 187 YLNFLEKEEKNQRVRLIVEFMYLTGLRFGEVLALTLEDIDFENKTLEVKHTLHTSGSKAE 246 Query: 233 ITVELPDGFMKLLAMTPIGK--------------ETFFINNDKQKMNATQFSIWFKAKAT 278 I ++ P + + F + F+ + K Sbjct: 247 IFLDSPKSLASYRVIGISDRVLEIIEEYLLMEKEGRFIFTKNGNPFMIFSFNDFLKRSFK 306 Query: 279 KAGVNK------SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGADRIR 330 ++G+ K + H R ++ A+ +M G YT ++++ Sbjct: 307 RSGIQKEEDFVLTTHVFRHSHISLLAELEVPIKAIMERVGHTNEKMTLGVYTHVTEKMK 365 >gi|257466156|ref|ZP_05630467.1| putative integrase [Fusobacterium gonidiaformans ATCC 25563] gi|315917313|ref|ZP_07913553.1| conserved hypothetical protein [Fusobacterium gonidiaformans ATCC 25563] gi|313691188|gb|EFS28023.1| conserved hypothetical protein [Fusobacterium gonidiaformans ATCC 25563] Length = 329 Score = 93.6 bits (231), Expect = 4e-17, Method: Composition-based stats. Identities = 37/262 (14%), Positives = 90/262 (34%), Gaps = 14/262 (5%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHT 129 L++ + + + S ++ ++++ G + + I T +RS + ++ + Sbjct: 54 LLNTFLSAKRVEGCSEKSLSYYQKTIERMLNSIG-KEIKYIVTDDLRSYLTEYQSEKQSS 112 Query: 130 PSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEG 189 + + F W ++Y+ +P + + K + ++ E++++ + E Sbjct: 113 RVTIDNIRRILSSFFSWLEDEDYILKSPVRRIHKVKTISSIKDTYSDEELERMRDSCHE- 171 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ-NNIFSIKTQKTGTIITVELPDG----FMKL 244 + + L +G+R + Q ++ I K V Sbjct: 172 IRDLALIDILASTGMRVGELVLLNRQDIKFGERECIVFGKGDKERVVYFDARTKIHLQNY 231 Query: 245 LAMTPIGKETFFINNDKQ--KMNATQFSIWFKAKATKAGVNK-SAHGVRKFSATISADAG 301 L F+ K ++ + + + +NK H R+ ATI+ D G Sbjct: 232 LNTRVDSNPALFVALRKPYNRLTIGGIEVRLRKIGKELEINKVHPHKFRRTLATIAIDKG 291 Query: 302 ATAHELMATYGWKTVDQAETYT 323 +L G + +D Y Sbjct: 292 MPIEQLQKLLGHRRIDTTLQYA 313 >gi|237708556|ref|ZP_04539037.1| transposase [Bacteroides sp. 9_1_42FAA] gi|229457485|gb|EEO63206.1| transposase [Bacteroides sp. 9_1_42FAA] Length = 320 Score = 93.6 bits (231), Expect = 4e-17, Method: Composition-based stats. Identities = 43/267 (16%), Positives = 90/267 (33%), Gaps = 27/267 (10%) Query: 85 GSLAVNSRISFESYFDQIIR------KSGDFDYRKITTKHIRSGVESRKHTP----SSAI 134 +A + +E+ D +++ + I K ++A Sbjct: 41 TDMAPATVQRYETSLKHTRDFVWETYHKKDVLLDEVSRQFIEDYEFWLKTEKKCCHNTAT 100 Query: 135 QFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFW---SEGSQ 191 ++L + + + + A+ + ++ +P L + R ++Q+ S SQ Sbjct: 101 KYLKNFKKITRIALAKGWMKNDPFLEI-RFSLDKVEPDFLEDSEIQKLISKEIDIPRLSQ 159 Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQNN-----IFSIKTQKTGTIITVELPDGFMKLLA 246 R F F ++GL SD +H+ + QKT + + L + +K+L Sbjct: 160 VRDIFVFCCFTGLAFSDIHGLRKEHIVEDSNGVRWIRKGRQKTKIMCNIPLIEIPLKILE 219 Query: 247 MTPIGKETFFINNDK---QKMNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISADAG 301 + + + + + + K A G+ K+ H R AT + G Sbjct: 220 KYSTNE---YCKKHGVLFPVLCNQKMNAYLKELADICGIKKTLTTHVGRHTFATFALANG 276 Query: 302 ATAHELMATYGWKTVDQAETYTKGADR 328 + + G V Y + DR Sbjct: 277 VSIESVAKMLGHTNVQMTRHYARVLDR 303 >gi|255305195|ref|ZP_05349367.1| phage integrase family protein [Clostridium difficile ATCC 43255] Length = 351 Score = 93.6 bits (231), Expect = 4e-17, Method: Composition-based stats. Identities = 53/308 (17%), Positives = 111/308 (36%), Gaps = 40/308 (12%) Query: 57 KREYINSPR-KKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKI 114 +RE++N + + L+ EY + L + + + + +I+ +I Sbjct: 46 EREFLNKSKMSTDMNFESLVDEYMQDMS-TRLKLTTIDIKKYLINLKILPFFRKLKINEI 104 Query: 115 TTKHIRSGVESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERP-KRKTEG 170 T KHIR ++ + + + +AV+ + NP K+ + Sbjct: 105 TAKHIRKWQNELLQSDYSQTYIKTINNQLVAILNYAVKYYNLPSNPAHLAGSIGKKNADE 164 Query: 171 IRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSI------ 224 ++ WT ++ ++F F ++ +PRLAFE L ++GLR + + + N +I Sbjct: 165 MQFWTLDEFKKFMEFENKP-EPRLAFEILFWAGLRLGELMALTPKDIFENKINIDKSYMK 223 Query: 225 ----------KTQKTGTIITVE------LPDGFMKLLAMTPIGKETFFINNDKQKMNATQ 268 KT K+ I+ + + D KL + E F K + Sbjct: 224 LNGEDIVSSPKTPKSKRIVPIPSFLYNNIKDYLSKLYDLK--EDERIF------KFAKSY 275 Query: 269 FSIWFKAKATKAGVNK-SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTKGA 326 +G+ + H +R A++ + + G + + TY+ Sbjct: 276 LHKELDRCCKLSGIKRIRVHDLRHSHASLLVNMDVNILTIAERLGHEKAETTWNTYSHLY 335 Query: 327 DRIRLGIK 334 +L + Sbjct: 336 PNKQLEVA 343 >gi|198274804|ref|ZP_03207336.1| hypothetical protein BACPLE_00963 [Bacteroides plebeius DSM 17135] gi|198276070|ref|ZP_03208601.1| hypothetical protein BACPLE_02255 [Bacteroides plebeius DSM 17135] gi|198270882|gb|EDY95152.1| hypothetical protein BACPLE_02255 [Bacteroides plebeius DSM 17135] gi|198272251|gb|EDY96520.1| hypothetical protein BACPLE_00963 [Bacteroides plebeius DSM 17135] Length = 372 Score = 93.6 bits (231), Expect = 4e-17, Method: Composition-based stats. Identities = 55/265 (20%), Positives = 97/265 (36%), Gaps = 26/265 (9%) Query: 84 WGSLAVNSRISFESYFDQIIR-KSGDFDYRKITTKHIRSGVE-----------SRKHTPS 131 + LA I ++ + R +G + ++ R +E S+K + Sbjct: 100 FKGLADRKNIKWQHVYKHFERFVNGKCTFEEVDVDLCRKFMEYLLNAPQSIHTSQKLHIN 159 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191 SA + ++ R + A R + NP ++R + ++E++ + E Sbjct: 160 SAAGYWSAFRAVLHTAYRDRKIKENPNGFLDRIECIPTMREHLSQEELIRLAETPCEEEV 219 Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQ---NNIFSIKT--QKTGTIITVELPDGFMKLLA 246 + AF F +GLR SD + Q +Q N + T QKT I+ + D LL Sbjct: 220 LKRAFLFGCLTGLRKSDIRQLTWQQIQPYTNGKMFVTTRMQKTKQIVHNPISDEAYGLLG 279 Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATA 304 E + K KM K AG+ K + H R ++ + G Sbjct: 280 E---RHEGLIFDGFKDKM----LQGPLKRWLLAAGITKKITFHCTRHSFGSLHVEMGTDM 332 Query: 305 HELMATYGWKTVDQAETYTKGADRI 329 + A G K + + Y+K A + Sbjct: 333 AVIQAYLGHKNITTTQIYSKMAAQQ 357 >gi|189461279|ref|ZP_03010064.1| hypothetical protein BACCOP_01929 [Bacteroides coprocola DSM 17136] gi|189461291|ref|ZP_03010076.1| hypothetical protein BACCOP_01941 [Bacteroides coprocola DSM 17136] gi|189431991|gb|EDV00976.1| hypothetical protein BACCOP_01941 [Bacteroides coprocola DSM 17136] gi|189432021|gb|EDV01006.1| hypothetical protein BACCOP_01929 [Bacteroides coprocola DSM 17136] Length = 337 Score = 93.6 bits (231), Expect = 4e-17, Method: Composition-based stats. Identities = 55/265 (20%), Positives = 97/265 (36%), Gaps = 26/265 (9%) Query: 84 WGSLAVNSRISFESYFDQIIR-KSGDFDYRKITTKHIRSGVE-----------SRKHTPS 131 + LA I ++ + R +G + ++ R +E S+K + Sbjct: 65 FKGLADRKNIKWQHVYKHFERFVNGKCTFEEVDVDLCRKFMEYLLNAPQSIHTSQKLHIN 124 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQ 191 SA + ++ R + A R + NP ++R + ++E++ + E Sbjct: 125 SAAGYWSAFRAVLHTAYRDRKIKENPNGFLDRIECIPTMREHLSQEELIRLAETPCEEEV 184 Query: 192 PRLAFEFLLYSGLRCSDSCRAGVQHLQ---NNIFSIKT--QKTGTIITVELPDGFMKLLA 246 + AF F +GLR SD + Q +Q N + T QKT I+ + D LL Sbjct: 185 LKRAFLFGCLTGLRKSDIRQLTWQQIQPYTNGKMFVTTRMQKTKQIVHNPISDEAYGLLG 244 Query: 247 MTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATA 304 E + K KM K AG+ K + H R ++ + G Sbjct: 245 E---RHEGLIFDGFKDKM----LQGPLKRWLLAAGITKKITFHCTRHSFGSLHVEMGTDM 297 Query: 305 HELMATYGWKTVDQAETYTKGADRI 329 + A G K + + Y+K A + Sbjct: 298 AVIQAYLGHKNITTTQIYSKMAAQQ 322 >gi|116048748|ref|YP_792452.1| putative integrase [Pseudomonas aeruginosa UCBPP-PA14] gi|115583969|gb|ABJ09984.1| putative integrase [Pseudomonas aeruginosa UCBPP-PA14] Length = 258 Score = 93.6 bits (231), Expect = 4e-17, Method: Composition-based stats. Identities = 39/234 (16%), Positives = 72/234 (30%), Gaps = 20/234 (8%) Query: 101 QIIRKSGDFDYRKITTKHIRSGVESR---KHTPSSAIQFLTSMRVLFKWAVRQEYVAI-N 156 Q+ + GD + S R + + L +R +F + N Sbjct: 3 QLAARLGDPLATALDASSYASLRRKRLEEGISGKTLNNELGYLRAVFNELKDLGQIDYGN 62 Query: 157 PCLSVERPKRKTEGIRPWTKEDM----QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRA 212 P V+ K + + T E + +S L L +G R S++ + Sbjct: 63 PLAGVKLLKLQERELSWLTTEQIGELLDSIRSRCD-NPHTELVTLLCLATGARWSEAEKL 121 Query: 213 GVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAM--TPIGKETFFINNDKQKMNATQFS 270 LQ N+ + K+G + V +P + G T I + ++ ++ T Sbjct: 122 PAHRLQGNVVTYAGTKSGKVRHVPIPPELANRASAHWRMHGPFTSCITSFRRALDRTTIQ 181 Query: 271 IWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTK 324 + +H +R A+ G L G T+ Y Sbjct: 182 LPQGQA---------SHALRHSFASHFMMNGGNILTLQKILGHSTLTMTMRYAH 226 >gi|52081940|ref|YP_080731.1| lambda integrase-like, N-terminal,DNA breaking-rejoining enzyme, catalytic core [Bacillus licheniformis ATCC 14580] gi|52787324|ref|YP_093153.1| YdcL [Bacillus licheniformis ATCC 14580] gi|52005151|gb|AAU25093.1| Lambda integrase-like, N-terminal,DNA breaking-rejoining enzyme, catalytic core [Bacillus licheniformis ATCC 14580] gi|52349826|gb|AAU42460.1| YdcL [Bacillus licheniformis ATCC 14580] Length = 364 Score = 93.6 bits (231), Expect = 4e-17, Method: Composition-based stats. Identities = 59/341 (17%), Positives = 106/341 (31%), Gaps = 34/341 (9%) Query: 11 VTKERTRHGKIIYYF------RKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSP 64 V K++ R YYF R G ++I+ S A + + E + Sbjct: 3 VYKDKERG---TYYFIISYTNRNGEYKQIKRRGFKSSG---EAKRAEAETLLRLETDDGE 56 Query: 65 RKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVE 124 + T +++ EY K A + + +I + G I ++ I Sbjct: 57 NEDNPTFEFVAKEYLKWYKKRRKASSYLKTSSIINTHLIPRFGSKKINNIRSRDIMRFQN 116 Query: 125 SRKHTPSSA--IQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIR-PWTKEDMQQ 181 + A + + +F +A++QEY NP + + WT ++ + Sbjct: 117 DLLDRYAVAHVKKIHQVLSAVFNFAIKQEYTKDNPARLAGNVDIEEDKHINYWTLDEFKA 176 Query: 182 FKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ------------NNIFSIKTQKT 229 F + F L YSG+R + + N K + T Sbjct: 177 FIQHVDDQLY-YALFMTLYYSGMRKGELLALTWGDIDFDSNTINIDKTVYNRIVTKPKTT 235 Query: 230 GTIITVELPDGFMKLLAMTPIGKET----FFINNDKQKMNATQFSIWFKAKATKAGVNK- 284 +I + +P M+LLA +T ++ T + A V K Sbjct: 236 SSIRKIMMPKHVMRLLAQLKAKTKTKMTYVVFGEFHDHISTTTLDRKYAEYVKAAKVKKI 295 Query: 285 SAHGVRKFSATISADAGATAHELMATYGWKTVDQA-ETYTK 324 H R A+ + + G K V Y+ Sbjct: 296 RLHDFRHSHASYLINRNTIPSVVAKRLGHKDVGTTLNIYSH 336 >gi|194429499|ref|ZP_03062021.1| integrase [Escherichia coli B171] gi|194412463|gb|EDX28763.1| integrase [Escherichia coli B171] gi|195182858|dbj|BAG66428.1| predicted integrase [Escherichia coli O111:H-] Length = 312 Score = 93.6 bits (231), Expect = 4e-17, Method: Composition-based stats. Identities = 49/301 (16%), Positives = 98/301 (32%), Gaps = 12/301 (3%) Query: 28 GHGRRIRLPYPHESTFIPAYMSALTGSTPKREYINSPRKKPTTLKWLISEYRK-SAHWGS 86 G+RIR + +S + L NS ++P ++ LI + K Sbjct: 6 RKGKRIRKKFKTKSDAVLYERWVLAQQHNNEWKGNSIDRRPLSV--LIDLWWKYHGQLMK 63 Query: 87 LAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKW 146 N+R+ + + + T+ +R + PS+ + + ++ +F Sbjct: 64 SGHNTRLKLLRLSEAMDDPCVHKLNTTMLTE-LRVSRIEQGIQPSTINREIGALSAMFTA 122 Query: 147 AVRQEY-VAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRLAFEFLLYSGLR 205 + + + NP ++ K + +K + Q +E RLA E LL +G R Sbjct: 123 LISSGHFLNDNPVQGLKGMKVNEREMGYLSKSECVQLLDALAENPDERLAVEILLSTGAR 182 Query: 206 CSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQKMN 265 + + + + + K TV + + + + G + F D Sbjct: 183 WGEVAALEQRRVLHCRITFSKTKNSKNRTVPISESLFE--KIKKRGGKLVFPTLD----- 235 Query: 266 ATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKG 325 + K A ++ H +R A+ G L G + Y Sbjct: 236 YSLVRDVIKTVAPDVPDGQAVHALRHTFASHFMMNGGNILTLQKILGHAKIQTTMIYAHL 295 Query: 326 A 326 A Sbjct: 296 A 296 >gi|326330366|ref|ZP_08196676.1| putative phage integrase [Nocardioidaceae bacterium Broad-1] gi|325951903|gb|EGD43933.1| putative phage integrase [Nocardioidaceae bacterium Broad-1] Length = 382 Score = 93.6 bits (231), Expect = 5e-17, Method: Composition-based stats. Identities = 55/339 (16%), Positives = 117/339 (34%), Gaps = 34/339 (10%) Query: 9 PFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIP-----AYMSALTGSTPKREYINS 63 + T+ G++ R R H F ++ T + +++N Sbjct: 6 KHTARWTTKEGEVRTKVRWRAVYVDRAGEEHVKHFDRKTEGQDWIDEQTAGLVRGDWVN- 64 Query: 64 PRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFD-QIIRKSGDFDYRKITTKHIRSG 122 P T K +R A ++R +FE + I K GD+ I ++ Sbjct: 65 PELGKQTFKAYAEAWR---ARQVHAESTRTTFEIALNAHIYPKIGDWRIDSIRQADVQEL 121 Query: 123 VESRKHTPSSAIQFLT--SMRVLFKWAVRQEYVAINPCLSVERPKRKTE-GIRPWTKEDM 179 V T + L + ++ K A ++ +A +PC P+ + + P T + + Sbjct: 122 VAKWSATAAPTTVHLRYGVLAIVMKAAAKERVLAGSPCEGTRLPRLDPKSALVPITTDVV 181 Query: 180 QQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQ------------ 227 ++ + + L +G+R + V + + +I+ Sbjct: 182 KELSEM--IYPRYKNLITVLAGTGMRRGEILGLTVDRVSTDFNTIRVDRQLRTTEPTWKP 239 Query: 228 -KTGTII-TVELPDGFMKLLAMTPI-----GKETFFINNDKQKMNATQFSIWFKAKATKA 280 KT + + T+ +PD ++ + F N+ + + + + A K Sbjct: 240 PKTPSSVRTMAVPDIVLEAIEDQKKTFGIHESGLIFTNSSGNPIGKSTLWMAWNTAAKKV 299 Query: 281 GVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQA 319 + + H +R + A++ AG + L A G K + Sbjct: 300 KTDATPHDLRHYFASMHIRAGTSIKALQALLGHKNAAET 338 >gi|152985119|ref|YP_001350673.1| integrase/recombinase [Pseudomonas aeruginosa PA7] gi|150960277|gb|ABR82302.1| integrase/recombinase (E2 protein) [Pseudomonas aeruginosa PA7] Length = 337 Score = 93.6 bits (231), Expect = 5e-17, Method: Composition-based stats. Identities = 42/306 (13%), Positives = 93/306 (30%), Gaps = 62/306 (20%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHT 129 ++ + R+ + ++ + ++ + IR G + + + + + RK + Sbjct: 16 VLDQLRERIRYLHYSLRTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75 Query: 130 PSSAIQFLTSMRVLFK--WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 S+ Q L ++ + ++ + RP+ T +++ + F Sbjct: 76 ASTHRQALAALLFFYGKVLCADLPWLQ-----EIGRPRPSRRLPVVLTPDEVVRILGFL- 129 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQ--HLQNNIFSIKTQKTGTIITVELPDGFMKLL 245 EG RL + L +G+R S+ + V+ + ++ K + LP+ L Sbjct: 130 EGEH-RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLALGL 188 Query: 246 AMTPIGKETFFINN---------------------------------------------D 260 +++ + Sbjct: 189 REQLARARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVR 248 Query: 261 KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318 + M F FK +AG+ K + H +R AT +G + G V Sbjct: 249 RHHMYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVST 308 Query: 319 AETYTK 324 YT Sbjct: 309 TMIYTH 314 >gi|61398373|gb|AAX46051.1| integrase [Pseudomonas aeruginosa] Length = 337 Score = 93.6 bits (231), Expect = 5e-17, Method: Composition-based stats. Identities = 42/306 (13%), Positives = 93/306 (30%), Gaps = 62/306 (20%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHT 129 ++ + R+ + ++ + ++ + IR G + + + + + RK + Sbjct: 16 VLDQLRERIRYLHYSLPTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSCLANERKVS 75 Query: 130 PSSAIQFLTSMRVLFK--WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 S+ Q L ++ + ++ + RP+ T +++ + F Sbjct: 76 VSTHRQALAALLFFYGKVLCTDLPWLQ-----EIGRPRPSRRLPVVLTPDEVVRILGFL- 129 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQH--LQNNIFSIKTQKTGTIITVELPDGFMKLL 245 EG RL + L +G+R S+ + V+ + ++ K + LP+ L Sbjct: 130 EGEH-RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSL 188 Query: 246 AMTPIGKETFFINN---------------------------------------------D 260 +++ + Sbjct: 189 REQLSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVR 248 Query: 261 KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318 + M F FK +AG+ K + H +R AT +G + G V Sbjct: 249 RHHMYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVST 308 Query: 319 AETYTK 324 YT Sbjct: 309 TMIYTH 314 >gi|32472354|ref|NP_865348.1| integrase/recombinase Y4QK [Rhodopirellula baltica SH 1] gi|32443590|emb|CAD73032.1| probable integrase/recombinase Y4QK [Rhodopirellula baltica SH 1] Length = 450 Score = 93.6 bits (231), Expect = 5e-17, Method: Composition-based stats. Identities = 45/313 (14%), Positives = 90/313 (28%), Gaps = 66/313 (21%) Query: 73 WLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH---- 128 I E+R+S LA+ + + + G H Sbjct: 119 DAIQEFRRSMRRAGLAIATERCYVRKLKAFMADRGLNCLADFDRIHACDVEAHLTDLAVD 178 Query: 129 ---TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTE--GIRPWTKEDMQQFK 183 +PS+ Q S+ F+ +++E +E + + + E++ Q Sbjct: 179 GNVSPSTQNQAFHSLLKFFELVLKREMGK------IEAIRANKDSMAPTVMSPEEVGQVF 232 Query: 184 SFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGF 241 + + L G+R S++ R V+ + N I+ K V +PD Sbjct: 233 EGLE--GVYLVIAKLLYGCGMRISETHRLRVKDIDFANKQIEIRQSKGNKSRLVPMPDDL 290 Query: 242 MKLLAMTPIGKETFFINN------------------------------------------ 259 ++ L ++ ++ Sbjct: 291 IEPLRRFVKTRDALHEHDLANGTASVYLPYALDRKYPSAHRELKWQYLFASHRLSRDPRT 350 Query: 260 ---DKQKMNATQFSIWFKAKATKAGV--NKSAHGVRKFSATISADAGATAHELMATYGWK 314 + + AT F + +AG+ + ++H R AT G ++ G Sbjct: 351 GRIHRHHLRATTFPTHLRRAVEQAGILKHVTSHTFRHCFATHLLWQGTDIRQIQQLLGHS 410 Query: 315 TVDQAETYTKGAD 327 V E YT + Sbjct: 411 DVKTTEIYTHVRN 423 >gi|85708225|ref|ZP_01039291.1| site-specific recombinase, phage integrase family protein [Erythrobacter sp. NAP1] gi|85689759|gb|EAQ29762.1| site-specific recombinase, phage integrase family protein [Erythrobacter sp. NAP1] Length = 392 Score = 93.6 bits (231), Expect = 5e-17, Method: Composition-based stats. Identities = 38/245 (15%), Positives = 81/245 (33%), Gaps = 21/245 (8%) Query: 95 FESYFDQ-----IIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWAVR 149 ++ + I + G D + RS P +A + + ++ +F A Sbjct: 131 RRTHLEHAFAGKFIDEIGHADAVRWHASLTRSA------GPGAANRAMEILKAMFGKAEA 184 Query: 150 QEYVA--INPCLSVERPKRKTEGIRPWTKEDMQQF---KSFWSEGSQPRLA-FEFLLYSG 203 Y+ NP V+R R + R ++ +M + + +A L +G Sbjct: 185 WGYLPEHSNPFRGVKR-NRGRKIERFLSENEMARLGYALARHRAAKPNEVAVISLLALTG 243 Query: 204 LRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDGFMKLLAMTPIGKETFFINNDKQK 263 R + +Q + KTG + V L ++ P + + Sbjct: 244 CRRGEILNLTWGEVQGRKLKLTDSKTGPRV-VWLGKEARAVIDRLPRKRPHECVFQF-DV 301 Query: 264 MNATQFSIWFKAKATKAGV-NKSAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322 + + +++ +AG+ + H +R A+++A + T + G Y Sbjct: 302 LPVSAIEWFWRMLRVEAGIEDVRLHDLRHNFASLAARSSETLPMIGRLLGHNNSSTTARY 361 Query: 323 TKGAD 327 D Sbjct: 362 AHLDD 366 >gi|323484865|ref|ZP_08090221.1| phage integrase family Integrase/recombinase [Clostridium symbiosum WAL-14163] gi|323401861|gb|EGA94203.1| phage integrase family Integrase/recombinase [Clostridium symbiosum WAL-14163] Length = 279 Score = 93.6 bits (231), Expect = 5e-17, Method: Composition-based stats. Identities = 31/247 (12%), Positives = 77/247 (31%), Gaps = 21/247 (8%) Query: 88 AVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTPSSAIQFLTSMRVLFKWA 147 + ++ + + I + K + + + +S L S+ +A Sbjct: 23 SRHTIEKYRRDLRKFIDFINGGEVTKERVINFKEYLVENYAL-NSVNSILASINHFMVFA 81 Query: 148 VRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSEGSQPR-------LAFEFLL 200 + V++ K++ + P + ++ + + F + R L + + Sbjct: 82 ---GWQEF----RVKQLKKQRQVYCP-EERELSRQEYFELIRTAKREGKERICLIIQTIG 133 Query: 201 YSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVE--LPDGFMKLLAMTPIGKETFFIN 258 +G+R S+ VQ +++ + + + + L M + I F Sbjct: 134 STGIRISELPSITVQAVKDGGVQVDCKGKSRQVLMPKKLTMKLMHYIKKEKIRSGPVFRT 193 Query: 259 NDKQKMNATQFSIWFKAKATKAGVNKS---AHGVRKFSATISADAGATAHELMATYGWKT 315 ++ + K KAG+ + H +R A +L G Sbjct: 194 KQGNPIDRSNIWKEMKKICRKAGIKEKKVFPHNLRHLFACSFYQMEKDIAKLADLLGHSN 253 Query: 316 VDQAETY 322 ++ Y Sbjct: 254 INTTRIY 260 >gi|300903759|ref|ZP_07121671.1| site-specific recombinase, phage integrase family [Escherichia coli MS 84-1] gi|301306619|ref|ZP_07212679.1| site-specific recombinase, phage integrase family [Escherichia coli MS 124-1] gi|300404237|gb|EFJ87775.1| site-specific recombinase, phage integrase family [Escherichia coli MS 84-1] gi|300838125|gb|EFK65885.1| site-specific recombinase, phage integrase family [Escherichia coli MS 124-1] gi|315252958|gb|EFU32926.1| site-specific recombinase, phage integrase family [Escherichia coli MS 85-1] gi|315295607|gb|EFU54930.1| site-specific recombinase, phage integrase family [Escherichia coli MS 16-3] Length = 376 Score = 93.6 bits (231), Expect = 5e-17, Method: Composition-based stats. Identities = 37/215 (17%), Positives = 73/215 (33%), Gaps = 18/215 (8%) Query: 121 SGVESRKHTPSSAIQF---LTSMRVLFKWA-VRQEYVAINPCLSVERPKRKTEGIRPWTK 176 + + R P + L + LF A V NP V +PK + R T Sbjct: 58 AEINPRTGKPITGNTVRLELALLSSLFNIARVEWGTCRTNPVELVRKPKVSSGRDRRLTS 117 Query: 177 EDMQQFKSFWSE-GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQKTGTII 233 + ++ ++ E + F L + +R + +H+ + + K G Sbjct: 118 SEERRLSRYFREKNLMLYVIFHLALETAMRQGEILALRWEHIDLRHGVAHLPETKNGHSR 177 Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQKM--NATQFSIWFKAKATKAGV-NKSAHGVR 290 V L L M P +N A+ F ++ + + + H +R Sbjct: 178 DVPLSRRARNFLQMMP-------VNLHGNVFDYTASGFKNAWRIATQRLRIEDLHFHDLR 230 Query: 291 KFSATISADAG-ATAHELMATYGWKTVDQAETYTK 324 + + + G E+ A G ++++ + YT Sbjct: 231 HEAISRFFELGSLNVMEIAAISGHRSMNMLKRYTH 265 >gi|256843101|ref|ZP_05548589.1| integrase [Lactobacillus crispatus 125-2-CHN] gi|256614521|gb|EEU19722.1| integrase [Lactobacillus crispatus 125-2-CHN] Length = 407 Score = 93.6 bits (231), Expect = 5e-17, Method: Composition-based stats. Identities = 50/349 (14%), Positives = 113/349 (32%), Gaps = 53/349 (15%) Query: 48 MSALTGSTPKREYINSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSG 107 L KR T + L +Y S LA + ++ +I R+ G Sbjct: 44 QLLLDEKIRKRLIDLQTGNTDITFEQLTDKYI-SVAKQQLAHTTWYRKKTTLQKINREWG 102 Query: 108 DFDY-RKITTKHIRSGVESRK-HTPS-----SAIQFLTSMRVLFKWAVRQEYVAINPCLS 160 + IT++ I ++S P + + + + +F +R Y++ NP Sbjct: 103 TKIIAKNITSQFINKYLDSLLYDNPRHYSNGTVNSYKSCISGVFDLGIRYGYISKNPVNQ 162 Query: 161 VE-------RPKRKTEGIRPWTKEDMQQFKSFWSEGSQPRL--AFEFLLYSGLRCSDSCR 211 V+ + + + + ++ + ++ + ++ L F +L +G+RC ++ Sbjct: 163 VKITWKSQSKKRHEEIENKYLEDDEYAKILAYCDKHNRQDLKDLFIWLYNTGMRCGEAIA 222 Query: 212 AGVQHL------------QNNIFSIKTQKT--------------GTIITVELPDGFMKLL 245 +++ + + IK +K V LP K+ Sbjct: 223 LQKKNILQDKDGNYFARVEGTLIFIKGEKKLSERYRKTKNAKTFSGDRDVYLPPEAKKIA 282 Query: 246 ---AMTPIGKETFFINNDKQK--MNATQFSIWFKAKATKAGVNKSA--HGVRKFSATISA 298 + F + + + K A K ++K+ H R + A Sbjct: 283 LDHCKGKKANDYIFTSKWYHNNYFSISSIDRMLKTIAKKEEIHKNLVTHIFRHTHVSKLA 342 Query: 299 DAGATAHELMATYGWKTVDQAE-TYTKGADRIRLGIKNSRRISSVVDSD 346 + G + + G + Y ++++ R+ + DS Sbjct: 343 EQGWPLNVIQHRVGHSNSTITQKIYLHITNKVK--NTAIERLKNFPDSQ 389 >gi|134045984|ref|YP_001097470.1| phage integrase family protein [Methanococcus maripaludis C5] gi|132663609|gb|ABO35255.1| phage integrase family protein [Methanococcus maripaludis C5] Length = 275 Score = 93.6 bits (231), Expect = 5e-17, Method: Composition-based stats. Identities = 39/265 (14%), Positives = 87/265 (32%), Gaps = 22/265 (8%) Query: 74 LISEYRKSAHW-GSLAVNSRISFESYFDQIIRKSGD-FDYRKITTKHIRSGVESRKHTPS 131 L+ Y K + L+ + ++++S + D + +T + I E + + + Sbjct: 8 LVERYLK---FCSGLSETTLVNYKSTMKIFLNYYDDSLSFENLTIEDIIEFFEVYEASRN 64 Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINPCLS-VERPKRKTEGIRPWTKEDMQ-QFKSFWSEG 189 + I + S+ ++WA + +Y+ NP S + K + T++ +S Sbjct: 65 TKIYRIRSLNRFYEWANKHKYITGNPVRSFLNTLKPDKKERDYLTQKQSDDLLRSIIDVN 124 Query: 190 SQPRLAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVE----LPDGFMK 243 F + +G+R S+ + + I+ K V + + Sbjct: 125 FYIFTMF--FIKTGVRVSEFQNILLDDVDFNEQTIFIRGGKGRKDRFVFFDLDMGINLKR 182 Query: 244 LLA---MTPIGKETFFINNDKQKMNATQFSIWF----KAKATKAGVNKSAHGVRKFSATI 296 L + F+N + + + + + K + H +R AT Sbjct: 183 WLRERDILKPKAPNLFLNRRGKAIGKSSITHYINYLNDVYGKKVNKRITPHILRHTFATT 242 Query: 297 SADAGATAHELMATYGWKTVDQAET 321 D G L G + + Sbjct: 243 CVDKGMDLRTLQDILGHEDIKTTSI 267 >gi|110679359|ref|YP_682366.1| site-specific tyrosine recombinase XerC [Roseobacter denitrificans OCh 114] gi|109455475|gb|ABG31680.1| tyrosine recombinase XerC [Roseobacter denitrificans OCh 114] Length = 306 Score = 93.6 bits (231), Expect = 5e-17, Method: Composition-based stats. Identities = 39/244 (15%), Positives = 74/244 (30%), Gaps = 20/244 (8%) Query: 107 GDFDYRKITTKHIRSGVESRKHTPSSAI---QFLTSMRVLFKWAVRQEYVAINPCLSVER 163 G ++ +R+ + + T +A + L++++ +KW +E LS Sbjct: 53 GLGALADVSVTDMRAWMAQTRETGVAARSLARKLSAVKAFYKWLALREGFEPTAVLSTRA 112 Query: 164 PKRKTEGIRPWTKEDMQQFKSFWSEGS-------QPRLAFEFLLYSGLRCSDSCRAGVQH 216 PK + + RP + + S + L GLR S++ Sbjct: 113 PKFQKKLPRPLAPDAARNLIDAIEIQSQHPWVCARDVAVVTLLWGCGLRISEALSLTAAD 172 Query: 217 LQNNIFSIKTQKTGTIITVELPDGFMKLLAM-------TPIGKETFFINNDKQKMNATQF 269 + K G V + + F + Sbjct: 173 APLPATLRISGKGGKERIVPVLPAARDAVDAYVRMCPHPQTADAPLFRAVRGGPLRPGAI 232 Query: 270 SIWFKAKATKAGVNKSA--HGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 A + G+ +A H +R AT +AG + G ++ + YT D Sbjct: 233 QKVMAAARMQLGLPATATPHAMRHSFATHLLNAGGDLRAIQELLGHASLSTTQAYT-AVD 291 Query: 328 RIRL 331 +RL Sbjct: 292 TVRL 295 >gi|82703133|ref|YP_412699.1| Phage integrase [Nitrosospira multiformis ATCC 25196] gi|82411198|gb|ABB75307.1| Phage integrase [Nitrosospira multiformis ATCC 25196] Length = 329 Score = 93.6 bits (231), Expect = 5e-17, Method: Composition-based stats. Identities = 47/275 (17%), Positives = 98/275 (35%), Gaps = 34/275 (12%) Query: 88 AVNSRISFESYFDQIIRKSG---DFDYRKITTKHI---RSGVESRKHTPSSAIQFLTSMR 141 ++ +R ++++ + +G D+R IT H+ R +E + ++ + L ++ Sbjct: 44 SLQTRRAYQNDLRGFMAFAGIVSPEDFRLITRSHVLAWRKRLEEEQLGGATIRRKLAALS 103 Query: 142 VLFKWAVRQEYVAINPCLSVERPKRKT-EGIRPW-----TKEDMQQFKSFWSEGSQPRLA 195 LF++ V NP V+RP ++ +G P + ++ + +G + R Sbjct: 104 SLFEYLCEANAVTHNPVKGVKRPPVESWQGKTPALGDVQARALLEAPNAKTLKGKRDRAI 163 Query: 196 FEFLLYSGLRCSDSCRAGVQHL---QNNIFSIK-TQKTGTIITVELPD-------GFMKL 244 LLY G+R + R V+ + + ++ K G + + +++ Sbjct: 164 LSALLYHGIRREELARLKVKDYNQSRRGVPHLRIKGKGGKMRFIPTHPGTLTLIEEYLEA 223 Query: 245 LAMTPIGKETFF----INNDKQKMNATQ----FSIWFKAKATKAGV---NKSAHGVRKFS 293 F N + A + K G+ N H +R + Sbjct: 224 AGHGHDPDAPLFRPVKNNVHGHTLTALTPDSIYFEVVLKYLRKLGIFGENMGPHVMRATA 283 Query: 294 ATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 AT + D GA ++ G + Y R Sbjct: 284 ATNALDNGADIAKVQEWLGHANIATTRIYDHRKTR 318 >gi|320653467|gb|EFX21572.1| putative integrase [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320659167|gb|EFX26756.1| putative integrase [Escherichia coli O55:H7 str. USDA 5905] Length = 230 Score = 93.2 bits (230), Expect = 5e-17, Method: Composition-based stats. Identities = 37/216 (17%), Positives = 69/216 (31%), Gaps = 19/216 (8%) Query: 129 TPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWSE 188 SA +++ +F+ A+ + +VA NP + K + R E + + + Sbjct: 10 KAVSARVIRSTLVDVFRGAIAEGHVATNPVTTTRAAKSEVRRSRLTANEYVAIYHAAEHL 69 Query: 189 GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELP---------- 238 RL+ + + +G R D CR + + I KTG I + L Sbjct: 70 PIWLRLSMDLAVVTGQRVGDLCRMKWSDINDGHLHIGQSKTGAKIAIPLALTIDALDISL 129 Query: 239 -DGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGV-----NKSAHGVRKF 292 D K ET + + ++ S + +G+ + H +R Sbjct: 130 VDTLQK--CREASSSETIIASTYHEPLSPATVSRYLTKARNASGISFDGDPPTFHELR-S 186 Query: 293 SATISADAGATAHELMATYGWKTVDQAETYTKGADR 328 + G K+ A Y +R Sbjct: 187 LSARLYRNQIGYKFAQRLLGHKSDSMAAHYRDSRER 222 >gi|317480558|ref|ZP_07939648.1| phage integrase [Bacteroides sp. 4_1_36] gi|316903287|gb|EFV25151.1| phage integrase [Bacteroides sp. 4_1_36] Length = 377 Score = 93.2 bits (230), Expect = 5e-17, Method: Composition-based stats. Identities = 51/276 (18%), Positives = 97/276 (35%), Gaps = 24/276 (8%) Query: 71 LKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKHTP 130 + L+ EY++ L + + + F++ + D K ++S TP Sbjct: 99 IGLLMEEYKQREQPAHLHLRASRTK---FEKFRPGTRLCDINKRFCTDYAEWLQSEPLTP 155 Query: 131 -------SSAIQFLTSMRVLFKWAVRQEYVAINPCLSV---ERPKRKTEGIRPWTKEDMQ 180 ++A + ++ A ++ Y+ NP + E+ R T ++++ Sbjct: 156 QGKPLAQATACSCFWILGIILSAAWQKGYIKNNPWKLLSAKEKIARPESKREFLTLDEVR 215 Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN----IFSIKTQKTGTIITVE 236 + + R AF F Y GLR D + N S+ QK I++ Sbjct: 216 KLEDTPYIKENIRRAFLFTCYCGLRVGDVTDLCWSDISVNGGQHFVSVVMQKNSKPISLP 275 Query: 237 LPDGFMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAH-GV-RKFSA 294 LP + L + + F + T + + A AG+++ H + R Sbjct: 276 LPAKALSWLPERGEPEASVFSL-----PSHTVLNKHLRKWAELAGLDRHLHFHLSRHTYG 330 Query: 295 TISADAGATAHELMATYGWKTVDQAETYTKGADRIR 330 T+ AG + G V + Y K DR + Sbjct: 331 TMLITAGVDLYTASKMMGHADVRPTQVYAKIVDRKK 366 >gi|257869303|ref|ZP_05648956.1| phage integrase [Enterococcus gallinarum EG2] gi|257803467|gb|EEV32289.1| phage integrase [Enterococcus gallinarum EG2] Length = 324 Score = 93.2 bits (230), Expect = 5e-17, Method: Composition-based stats. Identities = 45/293 (15%), Positives = 95/293 (32%), Gaps = 44/293 (15%) Query: 70 TLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIR-KSGDFDYRKITTKHIRSGVESRK- 127 ++ + ++ L N++ ++ + ++ I+ + G + I ++ + Sbjct: 2 SVANYFDYWFENYVEKKLKYNTQKNYLNIINKYIKPEIGKYYLSSIGPSRLQDLMNKLPN 61 Query: 128 --HTP---SSAIQFLTSMRVLFKWAV-RQEYVAINPCLSVE------RPKRKTEGIRPWT 175 P S LT ++ FK AV + + NP + VE +PK+ + ++ T Sbjct: 62 GFDRPLAKHSVEIVLTVLKGAFKRAVYPWQAINSNPMVYVEMPAFENKPKQTRDDMKIIT 121 Query: 176 KEDMQQFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIK------TQKT 229 + Q+ F S RL ++GLR + C + + +I K Sbjct: 122 MDQYQKILEFNPPSSPFRLPLMIGFHTGLRRGEVCGLQWSDISLDERTITVDRIMLQDKH 181 Query: 230 GTII----------TVELPDGFMKLLAMTPIG-------------KETFFINND-KQKMN 265 G + T+ + D L TF D + + Sbjct: 182 GIQLGTPKTQASFRTIAIDDVLAAELRRARKSQSENKLRYGKFYYDSTFVCTKDNGEPVT 241 Query: 266 ATQFSIWFKAKATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318 + G++ + H +R AT+ + G + G + Sbjct: 242 PNSIKWHSSRIKKELGIDFNFHSLRHTHATMLLEDGVKPKIVQERLGHSRIAT 294 >gi|237711030|ref|ZP_04541511.1| site-specific recombinase [Bacteroides sp. 9_1_42FAA] gi|229454874|gb|EEO60595.1| site-specific recombinase [Bacteroides sp. 9_1_42FAA] Length = 352 Score = 93.2 bits (230), Expect = 5e-17, Method: Composition-based stats. Identities = 45/287 (15%), Positives = 97/287 (33%), Gaps = 37/287 (12%) Query: 72 KWLISEYRKSAH-WGSL-----AVNSRISFESYFDQIIR------KSGDFDYRKITTKHI 119 K L+ +R+ + +L + + +E + KS D +R I + + Sbjct: 56 KMLLERFREHNEKYRALIGKDVVEATVLRYERTVRYLEEFLKKEYKSSDIPFRNIDRQFV 115 Query: 120 RSG----VESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWT 175 + ++ +++L ++ + A+ +++ NP ++ + +T T Sbjct: 116 EKFEYFIKTEKNCAQNATVKYLKILKKIVTLALTNKWMTENPFTGIKFKQTQTN-RDFLT 174 Query: 176 KEDMQQFKSF---WSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNN-----IFSIKTQ 227 +E++ R F F SGL +D +H+ + + Sbjct: 175 EEELHAIMEKKFDIPRLEAVRDIFVFCCLSGLAFTDVQHLKPEHITKDINGEWWIRKARE 234 Query: 228 KTGTIITVELPDGFMKLL---AMTPI--GKETFFINNDKQKMNATQFSIWFKAKATKAGV 282 KT + + L D ++ P+ K Q+MN+ + K A G+ Sbjct: 235 KTNNVCHIPLLDIPAMIIEKYRKNPVCLQKNMVLPVPSNQRMNS-----YLKEIADVCGI 289 Query: 283 NK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGAD 327 K + H R A + + + G + + Y K D Sbjct: 290 TKKLTTHIARHSFACFALANKVSMETIAKMLGHSDIRTTKIYAKVLD 336 >gi|17386060|gb|AAL38574.1|AF445082_1 class I integrase [Acinetobacter baumannii] gi|47155069|emb|CAG26808.1| DNA integrase [Acinetobacter baumannii] gi|110350561|emb|CAK55555.1| integrase [Pseudomonas putida] gi|110350568|emb|CAK55561.1| integrase [Acinetobacter baumannii] gi|195977009|gb|ACG63564.1| DNA integrase [Citrobacter youngae] Length = 337 Score = 93.2 bits (230), Expect = 5e-17, Method: Composition-based stats. Identities = 42/306 (13%), Positives = 94/306 (30%), Gaps = 62/306 (20%) Query: 74 LISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIRSGV----ESRKHT 129 ++ + R+ + ++ + ++ ++ IR G + + + + + RK + Sbjct: 16 VLDQLRERIRYLHYSLPTEQAYVNWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVS 75 Query: 130 PSSAIQFLTSMRVLFK--WAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS 187 S+ Q L ++ + ++ + RP+ T +++ + F Sbjct: 76 VSTHRQALAALLFFYGKVLCTDLPWLQ-----EIGRPRPSRRLPVVLTPDEVVRILGFL- 129 Query: 188 EGSQPRLAFEFLLYSGLRCSDSCRAGVQH--LQNNIFSIKTQKTGTIITVELPDGFMKLL 245 EG RL + L +G+R S+ + V+ + ++ K + LP+ L Sbjct: 130 EGEH-RLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSL 188 Query: 246 AMTPIGKETFFINN---------------------------------------------D 260 +++ + Sbjct: 189 REQLSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVR 248 Query: 261 KQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQ 318 + M F FK +AG+ K + H +R AT +G + G V Sbjct: 249 RHHMYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVST 308 Query: 319 AETYTK 324 YT Sbjct: 309 TMIYTH 314 >gi|260900247|ref|ZP_05908642.1| site-specific recombinase, phage integrase family [Vibrio parahaemolyticus AQ4037] gi|308107582|gb|EFO45122.1| site-specific recombinase, phage integrase family [Vibrio parahaemolyticus AQ4037] Length = 385 Score = 93.2 bits (230), Expect = 5e-17, Method: Composition-based stats. Identities = 40/268 (14%), Positives = 93/268 (34%), Gaps = 18/268 (6%) Query: 93 ISFESYFDQIIRKSGDFDYRKITTKHIRSGVESRKH-TPSSAIQFLTSMRVLFKWAVRQE 151 +F S +++ G +T + + + S + +S ++ + LF AV E Sbjct: 117 KTFLSRSKRVMAAFGKERVTDVTRRDVERFLNSLTDLSHASINRYHAFLSKLFSMAVEHE 176 Query: 152 YVAINPCLSVERPKRKTEGIRPWTKEDMQQF--KSFWSEGSQPRLAFEFLLYSGLRCSDS 209 + +P V++ R + ++M+ F + A L +G+R + Sbjct: 177 IIDKSPVKGVKKRVENNAKDRVLSSKEMESFCRNACAEPNFLHASALMLSLLTGMRIGNV 236 Query: 210 CRAGVQHLQNNIFS--IKTQKTGTIITVELPDGFMKLLAM--TPIGKETFF--INNDKQK 263 L +++ S + K+G + + +L+ + F +NN + Sbjct: 237 ISLTRSMLADDLSSALLPMTKSGKSQRIYFSEPAKRLIRKCLKVSFNDWVFPSLNNRGEH 296 Query: 264 MNA-----TQFSIWFKAK-ATKAGVNKSAHGVRKFSATISADAGATAHELMATYGWKTVD 317 + + K + A + H +R+ AT A + G V+ Sbjct: 297 IAYPRACMERIQQAMKQEGCLDA--PFTIHDLRRTYATQMLIATNDIRLAQQSLGHSNVN 354 Query: 318 QAETYTKGADRIRLGIKNSRRISSVVDS 345 E Y + L + + + +++ + Sbjct: 355 VTERYAYYQN-THLAQASQQTVDAMLPN 381 >gi|167758156|ref|ZP_02430283.1| hypothetical protein CLOSCI_00494 [Clostridium scindens ATCC 35704] gi|167664053|gb|EDS08183.1| hypothetical protein CLOSCI_00494 [Clostridium scindens ATCC 35704] Length = 352 Score = 93.2 bits (230), Expect = 5e-17, Method: Composition-based stats. Identities = 46/281 (16%), Positives = 94/281 (33%), Gaps = 44/281 (15%) Query: 100 DQIIRKSGDFDYRKITTKHIRSGVESRK----------HTPSSAIQFLTSMRVLFKWAVR 149 + I + D ++ I +E K + + ++++R + + + Sbjct: 69 NYSIDQFTLGDLERLEPVDIEEYMEYLKVYIRDDELVTNGEKGLSRKMSALRSFYNYYFK 128 Query: 150 QEYVAINPCLSVERPKRKTEGIRPWTKEDM----------------QQFKSFWSEGSQPR 193 ++ ++ NP L V+ PK + I +++ Q + + Sbjct: 129 RQAISRNPTLLVDMPKLHDKAIIRLDADEVALLLDFVENCGNELSGQALNYYKKTKDRDL 188 Query: 194 LAFEFLLYSGLRCSDSCRAGVQHLQ--NNIFSIKTQKTGTIITVELPDGFMKLL------ 245 LL +G+R S+ + + NN ++ T+K G + V + K L Sbjct: 189 AILTLLLGTGIRVSECVGLDLTDVDFKNNGITV-TRKGGNQMVVYFGEEVEKALKHYIEG 247 Query: 246 ---AMTPIGKE--TFFINNDKQKMNATQFSIWFKAKATKAGVNK--SAHGVRKFSATISA 298 A TP+ F++ K++M K A + K + H +R T Sbjct: 248 DRKAATPLSGHENALFLSTQKRRMGIQAVENMVKKYARQVTPTKKITPHKLRSTYGTSLY 307 Query: 299 DAGATAHELMATYGWKTVDQA-ETYTK-GADRIRLGIKNSR 337 + + G K V+ + Y DR R + Sbjct: 308 KETGDIYLVADVLGHKDVNTTKKHYAAIDEDRRRKAASAVK 348 >gi|88607245|ref|YP_504674.1| tyrosine recombinase XerD [Anaplasma phagocytophilum HZ] gi|88598308|gb|ABD43778.1| tyrosine recombinase XerD [Anaplasma phagocytophilum HZ] Length = 311 Score = 93.2 bits (230), Expect = 5e-17, Method: Composition-based stats. Identities = 39/278 (14%), Positives = 90/278 (32%), Gaps = 33/278 (11%) Query: 85 GSLAVNSRISFESYFDQIIRKSGDFDYRKITTK-----HIRSGVESRKHTPSSAIQFLTS 139 ++ N+ S++ + + + + + + R ++ ++ + +++ Sbjct: 18 KGVSENTVCSYKCDLEDLSQFLRRNGLKIVDASYGDLCEYIRNLNGRAYSAATVARRVSA 77 Query: 140 MRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQQFKSFWS-----EGSQPRL 194 ++ L + + V + LS+E + R ++ D+ EG + Sbjct: 78 IKGLCSFLYKDRIVHSDLSLSLESCRLGRTLPRVISESDIGMLLDIAKADLSAEGKRLYA 137 Query: 195 AFEFLLYSGLRCSDSCRAGV--------QHLQNNIFSIKTQKTGTIITVELPDGFMKLLA 246 L SG+R S+ G +H+ + + I K V L + M + Sbjct: 138 IVNILYSSGVRISELIHLGFFEIDAMLHEHVGDIGYIIIKGKGNRERLVLLNEVAMDSIR 197 Query: 247 MTPIGKETFFINNDKQKM------------NATQFSIWFKAKATKAGVN---KSAHGVRK 291 ++ F + + + + K A AG++ S H R Sbjct: 198 AYLEVRKCFIAGENTESRWLFPGAKYDQCISRQRVGQLLKELAISAGIDPEKVSPHKFRH 257 Query: 292 FSATISADAGATAHELMATYGWKTVDQAETYTKGADRI 329 AT + G+ + G + + YT A Sbjct: 258 SFATHLLNNGSNIVFIQKMLGHVNLSTTQVYTHVASEQ 295 >gi|330907916|gb|EGH36439.1| shufflon-specific DNA recombinase [Escherichia coli AA86] Length = 336 Score = 93.2 bits (230), Expect = 5e-17, Method: Composition-based stats. Identities = 37/215 (17%), Positives = 73/215 (33%), Gaps = 18/215 (8%) Query: 121 SGVESRKHTPSSAIQF---LTSMRVLFKWA-VRQEYVAINPCLSVERPKRKTEGIRPWTK 176 + + R P + L + LF A V NP V +PK + R T Sbjct: 18 AEINPRTGKPITGNTVRLELALLSSLFNIARVEWGTCRTNPVELVRKPKVSSGRDRRLTS 77 Query: 177 EDMQQFKSFWSE-GSQPRLAFEFLLYSGLRCSDSCRAGVQHLQN--NIFSIKTQKTGTII 233 + ++ ++ E + F L + +R + +H+ + + K G Sbjct: 78 SEERRLSRYFREKNLMLYVIFHLALETAMRQGEILALRWEHIDLRHGVAHLPETKNGHSR 137 Query: 234 TVELPDGFMKLLAMTPIGKETFFINNDKQKM--NATQFSIWFKAKATKAGV-NKSAHGVR 290 V L L M P +N A+ F ++ + + + H +R Sbjct: 138 DVPLSRRARNFLQMMP-------VNLHGNVFDYTASGFKNAWRIATQRLRIEDLHFHDLR 190 Query: 291 KFSATISADAG-ATAHELMATYGWKTVDQAETYTK 324 + + + G E+ A G ++++ + YT Sbjct: 191 HEAISRFFELGSLNVMEIAAISGHRSMNMLKRYTH 225 >gi|197106796|ref|YP_002132173.1| integrase/recombinase XerC [Phenylobacterium zucineum HLK1] gi|196480216|gb|ACG79744.1| integrase/recombinase XerC [Phenylobacterium zucineum HLK1] Length = 308 Score = 93.2 bits (230), Expect = 5e-17, Method: Composition-based stats. Identities = 41/270 (15%), Positives = 85/270 (31%),