RPSBLAST alignment for GI: 254780134 and conserved domain: cd00799
>gnl|CDD|29500 cd00799, INT_Cre, Cre recombinase, C-terminal catalytic domain. Cre-like recombinases belong to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The bacteriophage P1 Cre recombinase maintains the circular phage replicon in a monomeric state by catalyzing a site-specific recombination between two loxP sites. The catalytic core domain of Cre recombinase is linked to a more divergent helical N-terminal domain, which interacts primarily with the DNA major groove proximal to the crossover region.. Length = 287
Score = 41.5 bits (97), Expect = 3e-04
Identities = 49/235 (20%), Positives = 79/235 (33%), Gaps = 34/235 (14%)
Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG-----IRPWTKEDMQQF 182
PS+ + L+++ L + + V R R+ E ED+ +
Sbjct: 44 LAPSTISRRLSALSQLHRRSGLPSPADSPLVRLVLRGIRREEARPKRQALAILPEDLDKL 103
Query: 183 KSFWSEGSQPR---------LAFEFLL----YSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229
+S E R L F LL LR D L + KT ++
Sbjct: 104 RSLLDESDTLRDLRDLALLLLGFAGLLRRSELVRLRWEDLTFTDGGGLLVTLRRSKTDQS 163
Query: 230 GTIITVELPDGFM-------KLLAMTPIGKETFFINNDKQK------MNATQFSIWFKAK 276
G + +P + L I K F D+ ++ + K
Sbjct: 164 GLGVLKLIPPLTTCPVRALERWLEAARIPKGPLFRRIDRWGVLGPGALSDNSLNRILKRL 223
Query: 277 ATKAGVNK---SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
A AG+ S H +R+ AT +A AG + E+M W++ Y + ADR
Sbjct: 224 AEAAGLRSGSWSGHSLRRGFATEAARAGYSLLEIMRQGRWRSPKMVSRYIRDADR 278