RPSBLAST alignment for GI: 254780134 and conserved domain: cd00799

>gnl|CDD|29500 cd00799, INT_Cre, Cre recombinase, C-terminal catalytic domain. Cre-like recombinases belong to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The bacteriophage P1 Cre recombinase maintains the circular phage replicon in a monomeric state by catalyzing a site-specific recombination between two loxP sites. The catalytic core domain of Cre recombinase is linked to a more divergent helical N-terminal domain, which interacts primarily with the DNA major groove proximal to the crossover region.. Length = 287
 Score = 41.5 bits (97), Expect = 3e-04
 Identities = 49/235 (20%), Positives = 79/235 (33%), Gaps = 34/235 (14%)

Query: 128 HTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEG-----IRPWTKEDMQQF 182
             PS+  + L+++  L + +             V R  R+ E            ED+ + 
Sbjct: 44  LAPSTISRRLSALSQLHRRSGLPSPADSPLVRLVLRGIRREEARPKRQALAILPEDLDKL 103

Query: 183 KSFWSEGSQPR---------LAFEFLL----YSGLRCSDSCRAGVQHLQNNIFSIKTQKT 229
           +S   E    R         L F  LL       LR  D        L   +   KT ++
Sbjct: 104 RSLLDESDTLRDLRDLALLLLGFAGLLRRSELVRLRWEDLTFTDGGGLLVTLRRSKTDQS 163

Query: 230 GTIITVELPDGFM-------KLLAMTPIGKETFFINNDKQK------MNATQFSIWFKAK 276
           G  +   +P           + L    I K   F   D+        ++    +   K  
Sbjct: 164 GLGVLKLIPPLTTCPVRALERWLEAARIPKGPLFRRIDRWGVLGPGALSDNSLNRILKRL 223

Query: 277 ATKAGVNK---SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETYTKGADR 328
           A  AG+     S H +R+  AT +A AG +  E+M    W++      Y + ADR
Sbjct: 224 AEAAGLRSGSWSGHSLRRGFATEAARAGYSLLEIMRQGRWRSPKMVSRYIRDADR 278