RPSBLAST alignment for GI: 254780134 and conserved domain: cd01185
>gnl|CDD|29506 cd01185, INT_Tn4399, Tn4399 and related integrases, DNA breaking-rejoining enzymes, integrase/recombinases, N- and C-terminal domains. This CD includes various bacterial integrases, including cLV25, a Bacteroides fragilis chromosomal transfer factor integrase similar to the Bacteroides mobilizable transposon, Tn4399, integrase.. Length = 299
Score = 46.0 bits (109), Expect = 1e-05
Identities = 53/246 (21%), Positives = 96/246 (39%), Gaps = 22/246 (8%)
Query: 99 FDQIIRKSGDFDYRKITTKHIRS----GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVA 154
F + K D ++T + I + +K + ++A+ +L+ ++ L K A R + +
Sbjct: 51 FIECTYKEIDIALLELTREFILEFKLFLRKEKKLSRNTAVHYLSWLKKLLKIAYRDKGLR 110
Query: 155 INPCLSVERPKRKTEGIRPW-TKEDMQQFKS---FWSEGSQPRLAFEFLLYSGLRCSDSC 210
NP + K + E R + T +++Q+ R AF F ++GLR SD
Sbjct: 111 DNPFAKFKCKK-EEETDREYLTPDELQKLAETPCKDPRLELVRRAFLFSCFTGLRYSDIK 169
Query: 211 RAGVQHLQNN-----IFSIKTQKTGTIITVELPDGFMKLLAMTPIGKE-TFFINNDKQKM 264
+ + + + + QKT + + L D +++L P KE F M
Sbjct: 170 KLTWEEIVEDSDGEKWIRKRRQKTKVEVYIPLLDEALQILGKYPDEKEGLVFPLLKNSNM 229
Query: 265 NATQFSIWFKAKATKAGVNK--SAHGVRKFSATISADAGATAHELMATYGWKTVDQAETY 322
N K A AG+ K + H R AT+ +G + G + + Y
Sbjct: 230 NKP-----LKEWAKLAGIKKHITFHCARHTFATLQLLSGGPIETVSKMLGHTNIKTTQVY 284
Query: 323 TKGADR 328
+ D
Sbjct: 285 ARVTDE 290