BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780134|ref|YP_003064547.1| phage-related
integrase/recombinase [Candidatus Liberibacter asiaticus str. psy62]
(348 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780134|ref|YP_003064547.1| phage-related integrase/recombinase [Candidatus Liberibacter
asiaticus str. psy62]
Length = 348
Score = 724 bits (1870), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/348 (100%), Positives = 348/348 (100%)
Query: 1 MTPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY 60
MTPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY
Sbjct: 1 MTPSLRLPPFVTKERTRHGKIIYYFRKGHGRRIRLPYPHESTFIPAYMSALTGSTPKREY 60
Query: 61 INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120
INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR
Sbjct: 61 INSPRKKPTTLKWLISEYRKSAHWGSLAVNSRISFESYFDQIIRKSGDFDYRKITTKHIR 120
Query: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ
Sbjct: 121 SGVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVERPKRKTEGIRPWTKEDMQ 180
Query: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240
QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG
Sbjct: 181 QFKSFWSEGSQPRLAFEFLLYSGLRCSDSCRAGVQHLQNNIFSIKTQKTGTIITVELPDG 240
Query: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADA 300
FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADA
Sbjct: 241 FMKLLAMTPIGKETFFINNDKQKMNATQFSIWFKAKATKAGVNKSAHGVRKFSATISADA 300
Query: 301 GATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348
GATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP
Sbjct: 301 GATAHELMATYGWKTVDQAETYTKGADRIRLGIKNSRRISSVVDSDDP 348
>537021.9.peg.911_1
Length = 47
Score = 29.3 bits (64), Expect = 0.11, Method: Composition-based stats.
Identities = 13/23 (56%), Positives = 16/23 (69%)
Query: 314 KTVDQAETYTKGADRIRLGIKNS 336
+ V Q E Y KGA+RIRL +K S
Sbjct: 2 EIVSQVERYAKGANRIRLKVKYS 24
>gi|254780431|ref|YP_003064844.1| hypothetical protein CLIBASIA_01580 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 178
Score = 26.2 bits (56), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Query: 174 WTKEDMQQFKSFWSEG-SQPRLAFEF 198
WT E + + K FWSEG S ++A +
Sbjct: 3 WTVERIDKLKKFWSEGLSASQIAVQL 28
>537021.9.peg.912_1
Length = 47
Score = 25.4 bits (54), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 8/27 (29%), Positives = 18/27 (66%)
Query: 78 YRKSAHWGSLAVNSRISFESYFDQIIR 104
YR+ +HW L +R + + +F++I++
Sbjct: 21 YREKSHWTGLVSATRRNLDLHFNKIVQ 47
>gi|254780799|ref|YP_003065212.1| DNA translocase FtsK [Candidatus Liberibacter asiaticus str. psy62]
Length = 806
Score = 25.0 bits (53), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 4/29 (13%)
Query: 61 INSPRKKPTTLKWLISE----YRKSAHWG 85
+ +P+K T LKWL+ E Y+K + G
Sbjct: 513 VTNPQKAVTVLKWLVCEMEERYQKMSKIG 541
>gi|254780594|ref|YP_003065007.1| Glutathione S-transferase domain protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 230
Score = 25.0 bits (53), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 132 SAIQFLTSMRVLFKWAVRQEYVAINP 157
S +F T M F W R+E++ +NP
Sbjct: 21 SEYEFTTDMIEEFPWGKRREFLELNP 46
>gi|254780832|ref|YP_003065245.1| putative potassium uptake transport system protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 628
Score = 23.9 bits (50), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 11/41 (26%), Positives = 19/41 (46%)
Query: 122 GVESRKHTPSSAIQFLTSMRVLFKWAVRQEYVAINPCLSVE 162
G+ S I F + V +KW + + + + P LS+E
Sbjct: 375 GISVSGTMVISTIMFSVFVHVCWKWKISKVIIFLFPLLSIE 415
>gi|254780413|ref|YP_003064826.1| PAS/PAC sensor signal transduction histidine kinase [Candidatus
Liberibacter asiaticus str. psy62]
Length = 820
Score = 23.9 bits (50), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 11/38 (28%)
Query: 75 ISEYRKSAHWGSLAVNSRISFE-----------SYFDQ 101
+++Y K ++G+L NS+ SFE +YFD+
Sbjct: 280 LNQYTKKQYFGTLQNNSKESFEYLSHRNHPSLSAYFDE 317
>gi|254780664|ref|YP_003065077.1| bifunctional phosphoribosylaminoimidazolecarboxamide
formyltransferase/IMP cyclohydrolase [Candidatus
Liberibacter asiaticus str. psy62]
Length = 536
Score = 23.1 bits (48), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 8 PPFVTKERTRHGKIIYYFRKGHGRR 32
P F+ + +GKI Y FRK R+
Sbjct: 164 PLFLAEMDVNNGKIPYNFRKKMARQ 188
>gi|254780742|ref|YP_003065155.1| hypothetical protein CLIBASIA_03145 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 419
Score = 23.1 bits (48), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 14/30 (46%)
Query: 306 ELMATYGWKTVDQAETYTKGADRIRLGIKN 335
E+ TY TV Q + Y G D I KN
Sbjct: 220 EISRTYDLPTVGQHKVYLSGHDEIHSLFKN 249
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.320 0.132 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 212,488
Number of Sequences: 1233
Number of extensions: 8045
Number of successful extensions: 23
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 14
Number of HSP's gapped (non-prelim): 10
length of query: 348
length of database: 328,796
effective HSP length: 75
effective length of query: 273
effective length of database: 236,321
effective search space: 64515633
effective search space used: 64515633
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 39 (19.6 bits)