Query gi|254780135|ref|YP_003064548.1| hypothetical protein CLIBASIA_00070 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 408 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 33803 Date Sun May 22 06:23:34 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780135.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >2ww8_A RRGA, cell WALL surfac 95.8 0.018 5.4E-07 37.0 5.0 59 326-393 202-267 (269) 2 >1x9d_A Endoplasmic reticulum 58.2 2.6 7.7E-05 21.8 0.2 63 295-366 155-227 (305) 3 >2ri9_A Mannosyl-oligosacchari 40.0 10 0.0003 17.6 0.8 78 285-375 19-98 (100) 4 >2c5u_A RNA ligase, T4 RNA lig 37.1 11 0.00034 17.2 0.7 36 166-201 2-38 (98) 5 >1nxc_A Mannosyl-oligosacchari 32.9 24 0.00072 14.9 1.8 64 285-359 17-85 (90) 6 >3kp1_E D-ornithine aminomutas 26.2 8.8 0.00026 18.0 -1.4 38 34-78 20-57 (76) 7 >3imo_A Integron cassette prot 25.2 38 0.0011 13.5 2.1 35 360-395 28-62 (133) 8 >1sr4_B CDT B, cytolethal dist 18.8 7.1 0.00021 18.7 -3.1 13 261-273 124-136 (138) 9 >1shu_X Anthrax toxin receptor 18.5 52 0.0015 12.6 7.5 138 241-392 36-180 (182) 10 >2waq_B DNA-directed RNA polym 17.4 43 0.0013 13.2 0.7 20 358-377 91-110 (110) No 1 >>2ww8_A RRGA, cell WALL surface anchor family protein; IGG, pilus, CNA_B, adhesin, integrin, cell adhesion; HET: EPE; 1.90A {Streptococcus pneumoniae} (A:221-279,A:318-447,A:506-585) Probab=95.76 E-value=0.018 Score=37.03 Aligned_cols=59 Identities=17% Similarity=0.253 Sum_probs=41.4 Q ss_pred HHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCC-------HHHHHHHHCCCCHHEEEECCCCCHHHHHHHHHHHH Q ss_conf 999998898876313577418999841488743-------02678762059032044258765344789877777 Q gi|254780135|r 326 DRILQDCYYMHKHHRTGRGAITIFSVGFSPDQD-------TRYTLRQCASDPSKYYEINSDENVMPIAKSLARNV 393 (408) Q Consensus 326 drilqdcyymhkhhrtgrgaitifsvgfspdqd-------trytlrqcasdpskyyeinsdenvmpiakslarnv 393 (408) .+.+..|-.+. ...|+||+|||..+-+ .++-|+.|||+|+.||+... .-.+-+++|+.. T Consensus 202 ~~~~~~c~~~k------~~~i~i~ti~~~~~~~~~~~~~~~~~~l~~cas~~~~y~~~~~---~~~~f~~ia~~~ 267 (269) T 2ww8_A 202 PTRWYYNGNIA------PDGYDVFTVGIGINGDPGTDEATATSFMQSISSKPENYTNVTD---TTKILEQLNRYF 267 (269) T ss_dssp HHHHHHHHHTG------GGCCEEEEEEESCCCTTTSCHHHHHHHHHHTSSSGGGEEEESS---GGGHHHHHHHHH T ss_pred CEEEEEEEECC------CCCCEEEEEEEECCCCCCCCCCCCCEEEEEEECCCCCEEEECC---CCCEECCCCCCC T ss_conf 30578875204------6763035776771564210023430577566116653264056---651111335541 No 2 >>1x9d_A Endoplasmic reticulum mannosyl-oligosaccharide 1, 2-alpha-mannosidase; substrate analogue, glycosyl hydrolase; HET: SMD; 1.41A {Homo sapiens} (A:1-125,A:337-516) Probab=58.20 E-value=2.6 Score=21.77 Aligned_cols=63 Identities=25% Similarity=0.452 Sum_probs=38.3 Q ss_pred CCCCCCCCCEEEEEEEECCCCCHHHCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCC----------CCCHHHHHH Q ss_conf 3546766530688676344100111157889999998898876313577418999841488----------743026787 Q gi|254780135|r 295 CFPHGASHSKYMLMFAIGNQLSRSSVGKETIDRILQDCYYMHKHHRTGRGAITIFSVGFSP----------DQDTRYTLR 364 (408) Q Consensus 295 cfphgashskymlmfaignqlsrssvgketidrilqdcyymhkhhrtgrgaitifsvgfsp----------dqdtrytlr 364 (408) ||--| |||+|.++....---+.-.++...|+.+-+...||-+.- +|+....+ ..|.+|.|| T Consensus 155 cF~gG--------~~aLg~~~~~~~~~l~~a~~l~~~c~~~y~~~~tGl~PE-~~~~~~~~~~~~~~~~~~~~~~~y~LR 225 (305) T 1x9d_A 155 CFLPG--------TLALGVYHGLPASHMELAQELMETCYQMNRQMETGLSPE-IVHFNLYPQPGRRDVEVKPADRHNLLR 225 (305) T ss_dssp GHHHH--------HHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTSTTSCCCS-EEECCSSCCTTCCSCBCCGGGCCBCCC T ss_pred HHHHH--------HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCE-EEEECCCCCCCCCCCCCCCCCCCCCCC T ss_conf 87677--------887601247876799999999999999886241679865-665346687555666557345577889 Q ss_pred HH Q ss_conf 62 Q gi|254780135|r 365 QC 366 (408) Q Consensus 365 qc 366 (408) -- T Consensus 226 PE 227 (305) T 1x9d_A 226 PE 227 (305) T ss_dssp CH T ss_pred CH T ss_conf 22 No 3 >>2ri9_A Mannosyl-oligosaccharide alpha-1,2-mannosidase; alternative conformations, modulation of activity, glycoprotein, glycosidase, hydrolase; HET: NAG NDG MAN MMA; 1.95A {Penicillium citrinum} (A:267-366) Probab=40.04 E-value=10 Score=17.59 Aligned_cols=78 Identities=15% Similarity=0.233 Sum_probs=49.7 Q ss_pred CCEEEECCCC--CCCCCCCCCEEEEEEEECCCCCHHHCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCHHHH Q ss_conf 8426513674--35467665306886763441001111578899999988988763135774189998414887430267 Q gi|254780135|r 285 DGQVLTNTNH--CFPHGASHSKYMLMFAIGNQLSRSSVGKETIDRILQDCYYMHKHHRTGRGAITIFSVGFSPDQDTRYT 362 (408) Q Consensus 285 dgqvltntnh--cfphgashskymlmfaignqlsrssvgketidrilqdcyymhkhhrtgrgaitifsvgfspdqdtryt 362 (408) +|..-....| ||--| |||+|-.+....---+.-.++...|+.|...-.||-|.-.. .|.|+++.. T Consensus 19 ~~~~~p~~~HL~CF~gG--------m~aLGa~~~~~~~~l~~a~~Lt~tC~~~Y~~t~TGl~PE~~---~f~~~~~~~-- 85 (100) T 2ri9_A 19 NRNYDLSSQHLTCFDGG--------SFLLGGTVLDRQDFIDFGLELVDGCEATYNSTLTKIGPDSW---GWDPKKVPS-- 85 (100) T ss_dssp TTEEECEEETGGGGHHH--------HHHHHHHHHTCHHHHHHHHHHHHHHHHHHHTSSSSCCCSEE---ECCTTCCCG-- T ss_pred CCCCCCCCCHHHHHHCH--------HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEE---CCCCCCCCC-- T ss_conf 88777640058675042--------66626623350778998999999999999974762478421---466545677-- Q ss_pred HHHHCCCCHHEEE Q ss_conf 8762059032044 Q gi|254780135|r 363 LRQCASDPSKYYE 375 (408) Q Consensus 363 lrqcasdpskyye 375 (408) ...|.-++.+||- T Consensus 86 ~~~~~~~~~~~yi 98 (100) T 2ri9_A 86 DQKEFYEKAGFYI 98 (100) T ss_dssp GGHHHHHHHSCEE T ss_pred CCCHHCCCCCCEE T ss_conf 5200034677154 No 4 >>2c5u_A RNA ligase, T4 RNA ligase 1; nucleotidyl transferase, ATP-binding; HET: APC; 2.21A {Bacteriophage T4} (A:102-199) Probab=37.11 E-value=11 Score=17.22 Aligned_cols=36 Identities=14% Similarity=0.163 Sum_probs=25.0 Q ss_pred CEEEEEECCCCEEE-ECCCCCCCCCCCCCCCCCHHHH Q ss_conf 64886300042253-1255222112357420017789 Q gi|254780135|r 166 GLMIMPFAWDGYWL-ASRGKVADSQVHRPKYLEYSHY 201 (408) Q Consensus 166 glmimpfawdgywl-asrgkvadsqvhrpkyleyshy 201 (408) |-||.||-++|.|. +|||-....|......+-++.- T Consensus 2 GSLi~~~~~~g~~~~~Tkgs~~s~qa~~a~~~~~~~~ 38 (98) T 2c5u_A 2 GSLVSTYLDGDEILFKSKGSIKSEQALXANGILXNIN 38 (98) T ss_dssp SEEEEEEEETTEEEEEETTBSSSHHHHHHHHHHHSGG T ss_pred CEEEEEEEECCEEEEEECCCCCCCHHHHHHHHHHHHH T ss_conf 4899999999999998478788826799999999987 No 5 >>1nxc_A Mannosyl-oligosaccharide 1,2-alpha-mannosidase IA; glycosidase, structural genomics, PSI, protein structure initiative; HET: NAG BMA MAN; 1.51A {Mus musculus} (A:273-362) Probab=32.91 E-value=24 Score=14.92 Aligned_cols=64 Identities=22% Similarity=0.361 Sum_probs=39.2 Q ss_pred CCEEEECCCC--CCCCCCCCCEEEEEEEECCCCCHHHCCH---HHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCH Q ss_conf 8426513674--3546766530688676344100111157---8899999988988763135774189998414887430 Q gi|254780135|r 285 DGQVLTNTNH--CFPHGASHSKYMLMFAIGNQLSRSSVGK---ETIDRILQDCYYMHKHHRTGRGAITIFSVGFSPDQDT 359 (408) Q Consensus 285 dgqvltntnh--cfphgashskymlmfaignqlsrssvgk---etidrilqdcyymhkhhrtgrgaitifsvgfspdqdt 359 (408) +|..-..-.| ||--| |||+|-......-.+ +.-..+..-||.+...-.||-|.-.. .|.++.++ T Consensus 17 ~g~~~~~~~HL~CF~gG--------m~aLGa~~~~~~~~~~~~~~a~~Lt~tC~~~Y~~tpTGl~PE~~---~f~~~~~~ 85 (90) T 1nxc_A 17 GGLLEHKMGHLTCFAGG--------MFALGADGAPEARAQHYLELGAEIARTCHESYNRTYVKLGPEAF---RFDGGVEA 85 (90) T ss_dssp TTEEECEEETGGGGHHH--------HHHHTSTTSCTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCCSEE---ESSTTCSS T ss_pred CCCCCCCCCHHHHHHHH--------HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEE---ECCCCCCC T ss_conf 98566541117887865--------99870644514456789999999999999999844102587514---30587676 No 6 >>3kp1_E D-ornithine aminomutase S component; 5 aminomutase (OAM); HET: PLP B12 5AD; 2.01A {Clostridium sticklandii} PDB: 3kow_E* 3koy_E* 3koz_E* 3kp0_E* 3kox_E* (E:46-121) Probab=26.20 E-value=8.8 Score=18.03 Aligned_cols=38 Identities=34% Similarity=0.544 Sum_probs=28.1 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCHH Q ss_conf 999999876777777888899998776410684323667741223 Q gi|254780135|r 34 VAIVDVVVDQVTVMQKTALLQEVLDHVIYRTSPKNLYDLREAGRD 78 (408) Q Consensus 34 vaivdvvvdqvtvmqktallqevldhviyrtspknlydlreagrd 78 (408) -+||+-|++. -.|-|- -.|+.||-+.+.--|.||||+. T Consensus 20 k~iVe~v~~~-gLlgKG------AGhvV~kiak~~~i~i~eAG~~ 57 (76) T 3kp1_E 20 KAIVDKTMDR-GLMGKG------AGHIVYKIAKEKNISVREAGLA 57 (76) T ss_dssp HHHHHHHHHT-TCGGGC------HHHHHHHHHHHTTCCHHHHHHH T ss_pred HHHHHHHHHH-CCCCCC------CCHHHHHHHHHCCCCHHHHHHH T ss_conf 9999999980-544577------5532235797629988999999 No 7 >>3imo_A Integron cassette protein; novel, integron protein, argentinean O139 strain, unknown function; 1.80A {Vibrio cholerae O139} (A:) Probab=25.18 E-value=38 Score=13.51 Aligned_cols=35 Identities=26% Similarity=0.155 Sum_probs=20.4 Q ss_pred HHHHHHHCCCCHHEEEECCCCCHHHHHHHHHHHHHH Q ss_conf 267876205903204425876534478987777787 Q gi|254780135|r 360 RYTLRQCASDPSKYYEINSDENVMPIAKSLARNVIT 395 (408) Q Consensus 360 rytlrqcasdpskyyeinsdenvmpiakslarnvit 395 (408) --||+|.++.--.--| ..-+||||||+.|+-.|+- T Consensus 28 ~~tL~~y~~~Vm~rA~-hh~g~V~~IalAL~gAIlw 62 (133) T 3imo_A 28 VNILSQYISGVMARAD-HHAGNVEEIALALAGAILW 62 (133) T ss_dssp HHHHHHHHHHHHHHHH-HHCGGGHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHH-HCCCCCHHHHHHHHHHEEE T ss_conf 7999999999987755-3615421789986112157 No 8 >>1sr4_B CDT B, cytolethal distending toxin protein B; bacterial, virulence, DNA damage, genotoxin, cytotoxins, cell cycle, apoptosis, lectin; 2.00A {Haemophilus ducreyi} (B:1-105,B:229-261) Probab=18.80 E-value=7.1 Score=18.69 Aligned_cols=13 Identities=62% Similarity=1.124 Sum_probs=10.6 Q ss_pred EEEECCCCHHHHH Q ss_conf 7550007089998 Q gi|254780135|r 261 RITWDHFPYSFIK 273 (408) Q Consensus 261 ritwdhfpysfik 273 (408) .||-||||-||.| T Consensus 124 ~~~~~~~~~~~~~ 136 (138) T 1sr4_B 124 QITSDHFPVSFVR 136 (138) T ss_dssp CCSSSBCCEEEEE T ss_pred CCCCCCCCEEEEE T ss_conf 8518650728986 No 9 >>1shu_X Anthrax toxin receptor 2; alpha/beta rossmann fold, membrane protein; 1.50A {Homo sapiens} (X:) Probab=18.52 E-value=52 Score=12.60 Aligned_cols=138 Identities=10% Similarity=0.042 Sum_probs=74.7 Q ss_pred CCEEECCCCEEEEEECCCEEEEEECCCCHHHHHHHHHHHCCCCCCCEEEEC-----CCCCCC-CCCCCCEEEEEEEECCC Q ss_conf 511303585899995173687550007089998887410234678426513-----674354-67665306886763441 Q gi|254780135|r 241 NFQYHQDNNMLIFYSHRDFYRITWDHFPYSFIKNVFDMTSNQFGDGQVLTN-----TNHCFP-HGASHSKYMLMFAIGNQ 314 (408) Q Consensus 241 nfqyhqdnnmlifyshrdfyritwdhfpysfiknvfdmtsnqfgdgqvltn-----tnhcfp-hgashskymlmfaignq 314 (408) .+.-..+.-.++.|+.....-..|..++.+--.........++|.|.-+.. ..+-+. ......+.++.+.-|.. T Consensus 36 ~~~~~~~~~~iv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~al~~a~~~~~~~~~~~~~~~~ilitdg~~ 115 (182) T 1shu_X 36 RFVSPEMRLSFIVFSSQATIILPLTGDRGKISKGLEDLKRVSPVGETYIHEGLKLANEQIQKAGGLKTSSIIIALTDGKL 115 (182) T ss_dssp HCCCTTEEEEEEEESSSEEEEEEEECCHHHHHHHHHHHHTCCCCSCCCHHHHHHHHHHHHHHHTGGGSCEEEEEEECCCC T ss_pred HHCCCCCEEEEEEECCCEEECCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCC T ss_conf 73589977999995154026278778799999998776530467862578999999987642113688617999147877 Q ss_pred CCHHHCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCHHHHHHHHCCCCH-HEEEECCCCCHHHHHHHHHHH Q ss_conf 001111578899999988988763135774189998414887430267876205903-204425876534478987777 Q gi|254780135|r 315 LSRSSVGKETIDRILQDCYYMHKHHRTGRGAITIFSVGFSPDQDTRYTLRQCASDPS-KYYEINSDENVMPIAKSLARN 392 (408) Q Consensus 315 lsrssvgketidrilqdcyymhkhhrtgrgaitifsvgfspdqdtrytlrqcasdps-kyyeinsdenvmpiakslarn 392 (408) -... .+.+....+.+ ..-.+.+|.+|+.+..+ ..|++.|+.+. +|+.+.+......+-..+.+. T Consensus 116 ~~~~---~~~~~~~~~~~---------~~~~i~i~~ig~g~~~~--~~l~~ia~~~~g~~~~~~~~~~l~~~~~~i~~~ 180 (182) T 1shu_X 116 DGLV---PSYAEKEAKIS---------RSLGASVYCVGVLDFEQ--AQLERIADSKEQVFPVKGGFQALKGIINSILAQ 180 (182) T ss_dssp CTTH---HHHHHHHHHHH---------HHTTCEEEEEECSSCCH--HHHHHHSSSGGGEEESSSTTHHHHHHHHHHHHT T ss_pred CCCC---CHHHHHHHHHH---------HHCCCEEEEEEECCCCH--HHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHH T ss_conf 8886---38999999999---------97798899999785599--999998689997499349999999999999863 No 10 >>2waq_B DNA-directed RNA polymerase RPO2 subunit; multi-subunit, transcription; 3.35A {Sulfolobus shibatae} PDB: 2wb1_B 2pmz_B 3hkz_B (B:49-158) Probab=17.45 E-value=43 Score=13.19 Aligned_cols=20 Identities=25% Similarity=0.521 Sum_probs=15.1 Q ss_pred CHHHHHHHHCCCCHHEEEEC Q ss_conf 30267876205903204425 Q gi|254780135|r 358 DTRYTLRQCASDPSKYYEIN 377 (408) Q Consensus 358 dtrytlrqcasdpskyyein 377 (408) ..+..+.||..||.-|+-|| T Consensus 91 ~e~v~~~E~~~d~GGYFIiN 110 (110) T 2waq_B 91 DKLIEIGEDPKDPGGYFIVN 110 (110) T ss_dssp HHHHHHTSCTTCCCCCEEET T ss_pred HHHHHCCCCCCCCCCEEEEC T ss_conf 89986288878998289968 Done!